Query 002657
Match_columns 896
No_of_seqs 637 out of 4125
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 04:27:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002657.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002657hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 6E-101 1E-105 897.6 50.4 841 14-881 8-883 (889)
2 PLN03210 Resistant to P. syrin 100.0 3.4E-64 7.4E-69 623.6 51.8 623 156-849 186-912 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 9.9E-45 2.1E-49 386.8 16.7 281 159-442 1-285 (287)
4 KOG0444 Cytoskeletal regulator 99.9 9.5E-25 2.1E-29 230.6 -5.7 345 495-872 35-403 (1255)
5 PLN00113 leucine-rich repeat r 99.9 7E-22 1.5E-26 246.8 17.9 296 512-840 116-414 (968)
6 PLN00113 leucine-rich repeat r 99.9 1.5E-21 3.2E-26 244.0 18.5 321 512-850 138-472 (968)
7 KOG4194 Membrane glycoprotein 99.9 9.9E-23 2.1E-27 214.4 4.7 298 512-839 100-425 (873)
8 KOG4194 Membrane glycoprotein 99.8 1.6E-21 3.4E-26 205.5 2.7 291 513-838 148-447 (873)
9 PLN03210 Resistant to P. syrin 99.8 1.9E-19 4E-24 224.7 21.2 322 495-845 592-945 (1153)
10 KOG0444 Cytoskeletal regulator 99.8 8.2E-23 1.8E-27 216.0 -7.7 320 510-862 28-369 (1255)
11 KOG0472 Leucine-rich repeat pr 99.7 5.3E-20 1.2E-24 185.9 -4.9 312 509-841 201-539 (565)
12 PRK15387 E3 ubiquitin-protein 99.6 2.7E-15 5.8E-20 173.5 14.9 255 493-817 202-456 (788)
13 KOG0618 Serine/threonine phosp 99.6 1.2E-17 2.6E-22 186.1 -6.3 85 515-601 46-131 (1081)
14 KOG0472 Leucine-rich repeat pr 99.6 2.5E-18 5.3E-23 174.0 -10.8 256 518-840 49-307 (565)
15 KOG0617 Ras suppressor protein 99.6 4.2E-17 9.1E-22 146.0 -5.4 164 505-688 24-190 (264)
16 PRK15387 E3 ubiquitin-protein 99.5 3.3E-14 7.1E-19 164.6 13.8 255 515-841 202-456 (788)
17 PRK15370 E3 ubiquitin-protein 99.5 1.8E-14 3.8E-19 168.1 10.1 119 514-645 199-317 (754)
18 KOG0618 Serine/threonine phosp 99.5 8.2E-16 1.8E-20 171.7 -1.4 283 514-837 219-504 (1081)
19 PRK15370 E3 ubiquitin-protein 99.5 2.8E-14 6E-19 166.4 9.2 248 515-817 179-426 (754)
20 KOG4658 Apoptotic ATPase [Sign 99.5 1.5E-14 3.2E-19 171.3 6.7 322 496-849 527-866 (889)
21 KOG0617 Ras suppressor protein 99.5 7.8E-16 1.7E-20 138.0 -5.4 167 526-740 23-190 (264)
22 KOG4237 Extracellular matrix p 99.5 1.6E-15 3.4E-20 153.9 -4.7 296 495-816 49-356 (498)
23 PRK04841 transcriptional regul 99.4 1.4E-11 3E-16 153.7 21.9 288 156-486 16-332 (903)
24 KOG4237 Extracellular matrix p 99.4 1.4E-14 2.9E-19 147.1 -4.6 281 524-839 56-355 (498)
25 PRK00411 cdc6 cell division co 99.2 6.9E-10 1.5E-14 124.0 22.3 289 155-466 31-357 (394)
26 TIGR03015 pepcterm_ATPase puta 99.2 2.3E-09 5.1E-14 113.0 23.4 182 173-362 41-242 (269)
27 PF01637 Arch_ATPase: Archaeal 99.2 1.5E-10 3.3E-15 119.4 11.9 197 156-357 1-233 (234)
28 COG2909 MalT ATP-dependent tra 99.1 1.2E-09 2.5E-14 123.1 17.8 298 147-486 13-338 (894)
29 cd00116 LRR_RI Leucine-rich re 99.1 1E-11 2.2E-16 134.8 1.4 136 533-682 20-176 (319)
30 PF14580 LRR_9: Leucine-rich r 99.1 5.4E-11 1.2E-15 113.1 6.1 127 512-642 17-150 (175)
31 TIGR02928 orc1/cdc6 family rep 99.1 2.2E-08 4.8E-13 110.7 27.0 293 156-467 17-350 (365)
32 PF14580 LRR_9: Leucine-rich r 99.1 5.2E-11 1.1E-15 113.2 5.1 142 521-679 4-148 (175)
33 cd00116 LRR_RI Leucine-rich re 99.1 5.2E-11 1.1E-15 129.3 5.0 233 514-785 23-288 (319)
34 TIGR00635 ruvB Holliday juncti 99.0 1.6E-08 3.4E-13 108.7 20.7 263 156-467 6-289 (305)
35 PF05729 NACHT: NACHT domain 99.0 3.7E-09 8E-14 102.5 10.9 142 176-326 1-163 (166)
36 PRK00080 ruvB Holliday junctio 98.9 1.5E-07 3.3E-12 101.6 23.9 271 156-467 27-310 (328)
37 COG3899 Predicted ATPase [Gene 98.9 1.5E-08 3.2E-13 121.4 17.5 307 156-485 2-385 (849)
38 KOG0532 Leucine-rich repeat (L 98.9 4.2E-11 9E-16 127.7 -4.3 168 515-707 76-244 (722)
39 PRK06893 DNA replication initi 98.8 2E-08 4.3E-13 102.1 11.1 152 174-358 38-203 (229)
40 KOG1259 Nischarin, modulator o 98.8 8.1E-10 1.7E-14 108.6 0.2 133 533-685 281-413 (490)
41 KOG4341 F-box protein containi 98.8 2.7E-10 5.8E-15 117.4 -4.0 292 536-848 138-444 (483)
42 KOG3207 Beta-tubulin folding c 98.8 1.6E-09 3.4E-14 112.5 1.0 208 532-784 117-335 (505)
43 KOG3207 Beta-tubulin folding c 98.8 1.3E-09 2.8E-14 113.1 0.2 210 579-837 116-333 (505)
44 PTZ00112 origin recognition co 98.8 3.7E-07 7.9E-12 104.1 19.4 205 156-362 757-986 (1164)
45 PRK13342 recombination factor 98.7 6.1E-07 1.3E-11 99.9 19.4 173 156-359 14-197 (413)
46 KOG1259 Nischarin, modulator o 98.7 1.5E-09 3.2E-14 106.8 -1.2 131 510-645 280-412 (490)
47 KOG0532 Leucine-rich repeat (L 98.7 1.4E-09 3E-14 116.3 -1.5 152 515-688 99-251 (722)
48 COG2256 MGS1 ATPase related to 98.7 3.7E-06 8E-11 87.6 22.5 220 156-406 26-266 (436)
49 TIGR03420 DnaA_homol_Hda DnaA 98.7 1.7E-07 3.7E-12 95.9 12.6 168 159-359 22-202 (226)
50 COG4886 Leucine-rich repeat (L 98.7 2.2E-08 4.7E-13 112.0 5.7 120 519-642 98-219 (394)
51 PF13855 LRR_8: Leucine rich r 98.6 2.6E-08 5.7E-13 77.7 4.2 60 536-596 1-61 (61)
52 COG4886 Leucine-rich repeat (L 98.6 4.6E-08 1E-12 109.4 5.7 151 512-682 114-266 (394)
53 KOG4341 F-box protein containi 98.6 3.1E-09 6.7E-14 109.7 -3.4 297 515-837 139-459 (483)
54 TIGR02903 spore_lon_C ATP-depe 98.6 1.8E-05 3.8E-10 92.1 25.8 200 156-361 156-398 (615)
55 PRK04195 replication factor C 98.5 7.6E-06 1.6E-10 93.1 21.5 240 156-441 16-271 (482)
56 PRK07003 DNA polymerase III su 98.5 3.9E-06 8.5E-11 95.6 17.1 191 156-360 18-223 (830)
57 PF13173 AAA_14: AAA domain 98.5 3.3E-07 7.1E-12 84.0 7.1 120 175-318 2-127 (128)
58 PRK08727 hypothetical protein; 98.5 2E-06 4.3E-11 87.7 13.5 167 156-355 21-201 (233)
59 PRK05564 DNA polymerase III su 98.5 4.1E-06 8.9E-11 89.9 16.5 175 156-357 6-189 (313)
60 cd01128 rho_factor Transcripti 98.5 3.2E-07 7E-12 93.3 7.5 92 173-267 14-113 (249)
61 COG1474 CDC6 Cdc6-related prot 98.5 7.9E-06 1.7E-10 88.2 18.3 199 156-358 19-238 (366)
62 cd00009 AAA The AAA+ (ATPases 98.4 1.5E-06 3.2E-11 82.2 10.6 124 157-297 1-131 (151)
63 KOG2120 SCF ubiquitin ligase, 98.4 1.3E-08 2.8E-13 100.4 -3.8 184 585-816 186-373 (419)
64 PRK14949 DNA polymerase III su 98.4 3.3E-06 7.2E-11 98.2 14.6 178 156-358 18-220 (944)
65 KOG2120 SCF ubiquitin ligase, 98.4 1.9E-08 4.2E-13 99.2 -3.1 183 560-787 185-375 (419)
66 PRK12402 replication factor C 98.4 4.8E-06 1E-10 91.0 14.7 191 156-356 17-224 (337)
67 PLN03150 hypothetical protein; 98.4 9E-07 1.9E-11 103.7 9.3 106 537-644 419-527 (623)
68 PRK14960 DNA polymerase III su 98.4 5.1E-06 1.1E-10 93.7 14.7 188 156-356 17-217 (702)
69 PRK14961 DNA polymerase III su 98.4 9.5E-06 2.1E-10 88.7 16.6 187 156-355 18-217 (363)
70 PRK08084 DNA replication initi 98.4 3.3E-06 7.1E-11 86.2 12.0 170 156-358 25-209 (235)
71 KOG1909 Ran GTPase-activating 98.3 5.9E-08 1.3E-12 98.3 -1.3 216 532-785 26-280 (382)
72 KOG1909 Ran GTPase-activating 98.3 1.8E-07 4E-12 94.9 1.9 237 512-786 28-309 (382)
73 PRK14963 DNA polymerase III su 98.3 1.2E-05 2.6E-10 90.7 16.4 194 156-360 16-220 (504)
74 PRK12323 DNA polymerase III su 98.3 1E-05 2.2E-10 91.2 15.3 192 156-358 18-225 (700)
75 PF13191 AAA_16: AAA ATPase do 98.3 1.3E-06 2.8E-11 86.3 7.6 44 156-199 2-48 (185)
76 KOG2982 Uncharacterized conser 98.3 2.6E-07 5.7E-12 91.3 2.4 84 533-617 68-156 (418)
77 PRK06645 DNA polymerase III su 98.3 1.8E-05 3.8E-10 88.9 16.7 191 156-355 23-226 (507)
78 PRK00440 rfc replication facto 98.3 2E-05 4.3E-10 85.4 16.9 176 156-355 19-200 (319)
79 PRK09087 hypothetical protein; 98.3 1E-05 2.2E-10 81.7 13.4 142 174-357 43-194 (226)
80 PF13401 AAA_22: AAA domain; P 98.3 1.1E-06 2.4E-11 81.1 6.0 117 174-295 3-125 (131)
81 PF13855 LRR_8: Leucine rich r 98.3 7.8E-07 1.7E-11 69.3 4.0 57 514-570 1-59 (61)
82 PLN03025 replication factor C 98.3 1.1E-05 2.3E-10 86.8 14.2 178 156-355 15-197 (319)
83 PRK07471 DNA polymerase III su 98.3 2.4E-05 5.3E-10 84.6 16.7 194 156-359 21-239 (365)
84 PRK14962 DNA polymerase III su 98.3 1.9E-05 4.1E-10 88.4 16.1 184 156-362 16-223 (472)
85 PRK14956 DNA polymerase III su 98.3 1.6E-05 3.4E-10 87.4 15.0 192 156-355 20-219 (484)
86 PRK05642 DNA replication initi 98.3 8.7E-06 1.9E-10 83.0 12.1 152 175-359 45-209 (234)
87 PF05496 RuvB_N: Holliday junc 98.2 9.6E-06 2.1E-10 79.0 11.6 173 156-362 26-225 (233)
88 KOG0531 Protein phosphatase 1, 98.2 1.1E-07 2.4E-12 106.4 -2.0 125 514-644 72-198 (414)
89 KOG1859 Leucine-rich repeat pr 98.2 7.5E-08 1.6E-12 105.9 -3.3 126 536-682 164-290 (1096)
90 PLN03150 hypothetical protein; 98.2 2.1E-06 4.6E-11 100.6 8.3 109 515-624 419-532 (623)
91 PRK14957 DNA polymerase III su 98.2 2.1E-05 4.4E-10 89.0 15.6 181 156-360 18-223 (546)
92 PTZ00202 tuzin; Provisional 98.2 1.7E-05 3.7E-10 84.3 13.7 161 155-326 263-434 (550)
93 PF00308 Bac_DnaA: Bacterial d 98.2 1.1E-05 2.3E-10 81.3 12.0 161 175-357 34-207 (219)
94 KOG2028 ATPase related to the 98.2 2.2E-05 4.8E-10 80.1 13.7 172 156-353 140-331 (554)
95 TIGR02397 dnaX_nterm DNA polym 98.2 3.7E-05 8.1E-10 84.6 17.1 179 156-358 16-218 (355)
96 PRK09376 rho transcription ter 98.2 4.1E-06 8.8E-11 88.7 8.1 99 165-267 158-266 (416)
97 TIGR00678 holB DNA polymerase 98.2 4.8E-05 1E-09 75.1 15.4 160 165-354 3-187 (188)
98 PRK14964 DNA polymerase III su 98.2 4.2E-05 9.2E-10 85.1 16.1 177 156-355 15-214 (491)
99 COG3903 Predicted ATPase [Gene 98.2 4.2E-06 9E-11 87.9 7.5 293 174-488 13-316 (414)
100 PRK09112 DNA polymerase III su 98.2 2.6E-05 5.6E-10 84.0 13.8 195 156-359 25-241 (351)
101 PRK14958 DNA polymerase III su 98.1 2.9E-05 6.3E-10 87.9 14.6 178 156-356 18-218 (509)
102 PRK07940 DNA polymerase III su 98.1 5.2E-05 1.1E-09 82.8 15.9 170 156-358 7-213 (394)
103 PRK05896 DNA polymerase III su 98.1 4.3E-05 9.4E-10 86.4 15.3 193 156-360 18-223 (605)
104 KOG0531 Protein phosphatase 1, 98.1 4.2E-07 9.1E-12 101.8 -0.6 128 510-644 91-220 (414)
105 PRK14951 DNA polymerase III su 98.1 3.7E-05 8E-10 88.1 14.9 192 156-356 18-223 (618)
106 PRK07994 DNA polymerase III su 98.1 2.7E-05 5.9E-10 89.3 13.8 191 156-358 18-220 (647)
107 PRK13341 recombination factor 98.1 0.00019 4.1E-09 84.4 21.1 169 156-355 30-214 (725)
108 PRK14955 DNA polymerase III su 98.1 2.8E-05 6.1E-10 86.1 13.2 194 156-355 18-225 (397)
109 PRK08691 DNA polymerase III su 98.1 4.3E-05 9.3E-10 87.3 14.7 191 156-356 18-218 (709)
110 PRK08903 DnaA regulatory inact 98.1 2.1E-05 4.6E-10 80.3 11.2 168 158-362 23-203 (227)
111 PRK14970 DNA polymerase III su 98.1 5.6E-05 1.2E-09 83.4 15.3 177 156-355 19-206 (367)
112 TIGR00767 rho transcription te 98.1 1E-05 2.3E-10 86.1 8.7 93 173-267 166-265 (415)
113 PRK14087 dnaA chromosomal repl 98.1 2.2E-05 4.9E-10 87.7 11.8 167 175-359 141-320 (450)
114 TIGR01242 26Sp45 26S proteasom 98.1 2.3E-05 5E-10 86.1 11.4 169 156-352 124-328 (364)
115 PF12799 LRR_4: Leucine Rich r 98.1 4.4E-06 9.6E-11 59.5 3.7 38 561-599 2-39 (44)
116 KOG4579 Leucine-rich repeat (L 98.0 8.7E-07 1.9E-11 77.6 -0.5 109 516-626 29-141 (177)
117 PF12799 LRR_4: Leucine Rich r 98.0 5.6E-06 1.2E-10 58.9 3.7 41 584-625 1-41 (44)
118 PRK09111 DNA polymerase III su 98.0 8.9E-05 1.9E-09 85.3 15.1 192 156-357 26-232 (598)
119 PRK14969 DNA polymerase III su 98.0 9.8E-05 2.1E-09 84.3 15.3 180 156-358 18-221 (527)
120 COG2255 RuvB Holliday junction 98.0 0.00066 1.4E-08 67.8 18.4 171 156-360 28-225 (332)
121 PRK07764 DNA polymerase III su 98.0 0.00012 2.5E-09 87.2 16.0 191 156-361 17-225 (824)
122 PRK14959 DNA polymerase III su 98.0 0.00012 2.7E-09 83.3 15.3 194 156-362 18-225 (624)
123 PRK14952 DNA polymerase III su 98.0 0.00019 4E-09 82.2 16.5 195 156-362 15-224 (584)
124 KOG1859 Leucine-rich repeat pr 98.0 5E-07 1.1E-11 99.7 -4.0 125 512-644 162-291 (1096)
125 TIGR03345 VI_ClpV1 type VI sec 97.9 0.00011 2.3E-09 88.8 14.5 177 156-351 189-389 (852)
126 PRK07133 DNA polymerase III su 97.9 0.0002 4.3E-09 82.9 16.0 186 156-359 20-221 (725)
127 TIGR02881 spore_V_K stage V sp 97.9 0.00011 2.4E-09 76.5 13.0 154 156-329 8-194 (261)
128 TIGR02880 cbbX_cfxQ probable R 97.9 0.00015 3.3E-09 76.1 13.5 132 177-328 60-210 (284)
129 PRK14953 DNA polymerase III su 97.9 0.00036 7.9E-09 78.6 17.2 175 156-358 18-220 (486)
130 PRK14088 dnaA chromosomal repl 97.9 8.4E-05 1.8E-09 83.1 12.1 182 175-378 130-332 (440)
131 KOG2227 Pre-initiation complex 97.9 0.00041 8.8E-09 74.0 16.2 201 156-361 152-375 (529)
132 PRK14954 DNA polymerase III su 97.9 0.00025 5.4E-09 81.8 16.1 198 156-358 18-229 (620)
133 KOG1644 U2-associated snRNP A' 97.9 2E-05 4.3E-10 74.3 5.3 102 515-617 43-150 (233)
134 PRK06305 DNA polymerase III su 97.9 0.00032 6.8E-09 78.6 15.8 179 156-359 19-224 (451)
135 PRK03992 proteasome-activating 97.8 0.00012 2.6E-09 80.7 12.1 169 156-352 133-337 (389)
136 PRK14971 DNA polymerase III su 97.8 0.00026 5.7E-09 82.1 15.5 176 156-355 19-219 (614)
137 PRK14950 DNA polymerase III su 97.8 0.00046 9.9E-09 80.3 17.5 190 156-357 18-220 (585)
138 PF05621 TniB: Bacterial TniB 97.8 0.00051 1.1E-08 70.5 15.5 190 163-356 46-259 (302)
139 PRK06620 hypothetical protein; 97.8 6.8E-05 1.5E-09 75.1 9.2 135 176-355 45-186 (214)
140 CHL00181 cbbX CbbX; Provisiona 97.8 0.00037 8.1E-09 73.1 15.1 133 177-329 61-212 (287)
141 TIGR00362 DnaA chromosomal rep 97.8 0.00012 2.5E-09 81.8 12.1 160 175-356 136-308 (405)
142 PRK11331 5-methylcytosine-spec 97.8 0.00012 2.5E-09 79.7 11.3 104 156-267 177-282 (459)
143 KOG2982 Uncharacterized conser 97.8 4.6E-06 9.9E-11 82.8 0.4 108 537-645 46-159 (418)
144 PRK00149 dnaA chromosomal repl 97.8 0.00012 2.5E-09 82.9 11.6 159 175-355 148-319 (450)
145 PRK08451 DNA polymerase III su 97.8 0.00057 1.2E-08 77.0 16.6 176 156-358 16-218 (535)
146 PF14516 AAA_35: AAA-like doma 97.8 0.0013 2.8E-08 70.9 18.7 201 154-365 11-246 (331)
147 PRK12422 chromosomal replicati 97.8 0.00019 4.1E-09 80.0 12.6 154 175-352 141-307 (445)
148 KOG2543 Origin recognition com 97.8 0.00018 4E-09 74.5 11.0 167 154-326 6-193 (438)
149 PRK14948 DNA polymerase III su 97.8 0.00068 1.5E-08 78.7 17.1 192 156-358 18-222 (620)
150 PRK15386 type III secretion pr 97.7 6.5E-05 1.4E-09 80.6 7.6 80 514-604 52-135 (426)
151 CHL00095 clpC Clp protease ATP 97.7 0.00024 5.2E-09 86.2 13.1 154 156-326 181-354 (821)
152 PTZ00361 26 proteosome regulat 97.7 0.00018 3.9E-09 79.4 10.8 169 156-351 185-388 (438)
153 PHA02544 44 clamp loader, smal 97.7 0.00034 7.4E-09 75.5 12.8 143 156-324 23-171 (316)
154 PRK06647 DNA polymerase III su 97.7 0.00082 1.8E-08 77.1 16.3 189 156-356 18-218 (563)
155 KOG0989 Replication factor C, 97.7 0.00026 5.6E-09 71.4 10.6 185 156-358 38-231 (346)
156 PRK14086 dnaA chromosomal repl 97.7 0.00097 2.1E-08 75.7 16.5 159 175-355 314-485 (617)
157 PRK15386 type III secretion pr 97.7 0.00011 2.4E-09 78.9 8.3 141 665-840 46-187 (426)
158 TIGR02639 ClpA ATP-dependent C 97.7 0.00017 3.7E-09 86.4 10.5 155 156-327 184-359 (731)
159 KOG3665 ZYG-1-like serine/thre 97.6 3.6E-05 7.8E-10 89.9 4.3 129 515-645 123-263 (699)
160 KOG4579 Leucine-rich repeat (L 97.6 1.1E-05 2.4E-10 70.9 -0.1 87 515-603 54-142 (177)
161 KOG3665 ZYG-1-like serine/thre 97.6 1.6E-05 3.5E-10 92.8 1.2 136 535-682 121-261 (699)
162 PRK11034 clpA ATP-dependent Cl 97.6 0.00065 1.4E-08 80.4 14.3 154 156-326 188-362 (758)
163 PRK14965 DNA polymerase III su 97.6 0.00085 1.8E-08 77.7 14.9 192 156-360 18-223 (576)
164 PF05673 DUF815: Protein of un 97.6 0.0017 3.7E-08 64.5 14.5 44 156-199 29-76 (249)
165 PRK10865 protein disaggregatio 97.6 0.00056 1.2E-08 83.0 12.9 152 156-326 180-354 (857)
166 PTZ00454 26S protease regulato 97.6 0.0011 2.4E-08 72.7 14.0 170 156-352 147-351 (398)
167 TIGR03346 chaperone_ClpB ATP-d 97.5 0.00068 1.5E-08 82.6 13.5 153 156-326 175-349 (852)
168 PRK05707 DNA polymerase III su 97.5 0.0013 2.8E-08 70.3 13.9 94 257-358 106-203 (328)
169 COG3267 ExeA Type II secretory 97.5 0.0048 1E-07 61.1 16.4 183 173-360 49-247 (269)
170 PRK05563 DNA polymerase III su 97.5 0.0029 6.2E-08 73.0 17.5 187 156-355 18-217 (559)
171 COG1222 RPT1 ATP-dependent 26S 97.5 0.0023 5E-08 66.2 14.5 204 147-378 142-392 (406)
172 PRK07399 DNA polymerase III su 97.5 0.0029 6.2E-08 67.3 16.1 194 156-357 6-220 (314)
173 COG0593 DnaA ATPase involved i 97.5 0.0014 3E-08 70.7 13.3 153 174-349 112-277 (408)
174 TIGR03689 pup_AAA proteasome A 97.5 0.00089 1.9E-08 75.1 12.1 160 156-328 184-380 (512)
175 TIGR00763 lon ATP-dependent pr 97.5 0.006 1.3E-07 73.8 20.1 44 156-199 322-371 (775)
176 COG0466 Lon ATP-dependent Lon 97.4 0.017 3.6E-07 65.5 21.1 156 156-326 325-508 (782)
177 KOG1947 Leucine rich repeat pr 97.4 2.9E-05 6.3E-10 89.6 -0.3 109 535-643 187-306 (482)
178 KOG1644 U2-associated snRNP A' 97.4 0.00013 2.8E-09 68.9 3.8 104 535-642 41-150 (233)
179 KOG0733 Nuclear AAA ATPase (VC 97.4 0.0018 4E-08 71.2 12.9 167 156-351 192-395 (802)
180 TIGR01241 FtsH_fam ATP-depende 97.4 0.0023 5E-08 73.3 14.8 170 156-352 57-260 (495)
181 KOG2004 Mitochondrial ATP-depe 97.4 0.0081 1.8E-07 67.6 17.9 153 156-326 413-596 (906)
182 KOG2123 Uncharacterized conser 97.4 1.6E-05 3.5E-10 78.3 -2.5 103 534-640 17-125 (388)
183 PRK08116 hypothetical protein; 97.3 0.00026 5.6E-09 73.5 5.5 103 176-296 115-221 (268)
184 PRK10536 hypothetical protein; 97.3 0.0016 3.5E-08 65.6 10.6 54 156-212 57-110 (262)
185 PRK08118 topology modulation p 97.3 0.00015 3.3E-09 69.5 3.3 36 176-211 2-37 (167)
186 COG1373 Predicted ATPase (AAA+ 97.3 0.0034 7.4E-08 69.2 14.1 163 159-357 22-191 (398)
187 PRK08058 DNA polymerase III su 97.2 0.0073 1.6E-07 65.1 15.3 145 156-325 7-181 (329)
188 TIGR00602 rad24 checkpoint pro 97.2 0.00094 2E-08 77.0 8.8 190 156-353 86-318 (637)
189 PF04665 Pox_A32: Poxvirus A32 97.2 0.00062 1.3E-08 68.2 6.4 36 177-215 15-50 (241)
190 PF10443 RNA12: RNA12 protein; 97.2 0.02 4.4E-07 61.7 17.9 203 159-370 1-290 (431)
191 PRK10787 DNA-binding ATP-depen 97.2 0.011 2.5E-07 70.7 18.0 44 156-199 324-373 (784)
192 PRK08769 DNA polymerase III su 97.2 0.011 2.3E-07 62.7 15.8 172 161-359 11-209 (319)
193 PRK07261 topology modulation p 97.2 0.00093 2E-08 64.5 6.9 66 177-267 2-67 (171)
194 CHL00176 ftsH cell division pr 97.2 0.0059 1.3E-07 71.1 14.4 169 156-351 185-387 (638)
195 PRK12608 transcription termina 97.1 0.0028 6.1E-08 67.5 10.8 103 163-267 120-230 (380)
196 smart00382 AAA ATPases associa 97.1 0.0012 2.7E-08 61.4 7.5 89 175-270 2-91 (148)
197 KOG0741 AAA+-type ATPase [Post 97.1 0.015 3.3E-07 63.1 15.7 145 174-348 537-704 (744)
198 PF00004 AAA: ATPase family as 97.1 0.00088 1.9E-08 61.7 5.9 22 178-199 1-22 (132)
199 KOG2739 Leucine-rich acidic nu 97.1 0.00031 6.7E-09 69.5 2.6 86 557-643 62-154 (260)
200 PRK12377 putative replication 97.1 0.0013 2.8E-08 67.1 7.2 74 174-267 100-173 (248)
201 COG5238 RNA1 Ran GTPase-activa 97.0 0.00016 3.5E-09 71.1 0.1 82 535-617 29-130 (388)
202 PRK06871 DNA polymerase III su 97.0 0.023 4.9E-07 60.4 16.0 176 162-355 10-200 (325)
203 KOG2228 Origin recognition com 97.0 0.0097 2.1E-07 61.1 12.3 169 156-327 26-220 (408)
204 PRK06835 DNA replication prote 97.0 0.015 3.3E-07 62.0 14.6 37 175-214 183-219 (329)
205 PF13177 DNA_pol3_delta2: DNA 97.0 0.0053 1.1E-07 58.6 10.0 137 158-314 1-162 (162)
206 KOG2739 Leucine-rich acidic nu 96.9 0.00045 9.7E-09 68.4 2.3 103 513-617 42-153 (260)
207 PRK06090 DNA polymerase III su 96.9 0.032 6.9E-07 59.1 15.9 164 161-358 10-201 (319)
208 PRK08181 transposase; Validate 96.9 0.0022 4.7E-08 66.3 6.7 105 168-296 101-209 (269)
209 TIGR02640 gas_vesic_GvpN gas v 96.8 0.018 3.9E-07 60.0 13.4 56 161-224 9-64 (262)
210 KOG1514 Origin recognition com 96.8 0.028 6E-07 63.5 15.2 196 156-358 398-621 (767)
211 TIGR01243 CDC48 AAA family ATP 96.8 0.0095 2.1E-07 71.9 12.6 172 156-354 180-383 (733)
212 KOG1947 Leucine rich repeat pr 96.8 0.00059 1.3E-08 78.7 2.0 40 777-822 403-443 (482)
213 PF00448 SRP54: SRP54-type pro 96.8 0.0034 7.4E-08 61.8 7.0 89 175-266 1-92 (196)
214 TIGR02639 ClpA ATP-dependent C 96.8 0.0083 1.8E-07 72.1 11.7 44 156-199 456-508 (731)
215 PRK10865 protein disaggregatio 96.7 0.15 3.3E-06 62.2 22.4 44 156-199 570-622 (857)
216 COG0542 clpA ATP-binding subun 96.7 0.033 7.2E-07 65.0 15.3 102 156-268 493-604 (786)
217 PRK12727 flagellar biosynthesi 96.7 0.062 1.3E-06 60.1 16.7 89 174-267 349-438 (559)
218 PRK07993 DNA polymerase III su 96.7 0.049 1.1E-06 58.5 15.6 165 162-357 10-203 (334)
219 PRK06964 DNA polymerase III su 96.7 0.067 1.4E-06 57.3 16.3 91 256-358 131-225 (342)
220 PF13207 AAA_17: AAA domain; P 96.6 0.0014 3.1E-08 59.2 3.3 23 177-199 1-23 (121)
221 PRK06921 hypothetical protein; 96.6 0.0017 3.6E-08 67.4 4.0 39 174-214 116-154 (266)
222 PRK09183 transposase/IS protei 96.6 0.0041 8.9E-08 64.4 6.7 25 175-199 102-126 (259)
223 PRK04296 thymidine kinase; Pro 96.6 0.0023 5E-08 63.0 4.7 113 176-297 3-117 (190)
224 CHL00195 ycf46 Ycf46; Provisio 96.6 0.016 3.5E-07 65.3 11.8 171 156-352 230-429 (489)
225 smart00763 AAA_PrkA PrkA AAA d 96.6 0.0026 5.6E-08 67.5 5.1 44 156-199 53-102 (361)
226 KOG2123 Uncharacterized conser 96.6 0.00016 3.4E-09 71.5 -3.7 97 514-613 19-123 (388)
227 PF03215 Rad17: Rad17 cell cyc 96.6 0.014 3.1E-07 66.1 11.2 55 156-215 21-80 (519)
228 TIGR02237 recomb_radB DNA repa 96.6 0.007 1.5E-07 60.8 7.9 88 174-266 11-106 (209)
229 cd01393 recA_like RecA is a b 96.5 0.022 4.8E-07 58.0 11.5 90 174-267 18-124 (226)
230 cd00983 recA RecA is a bacter 96.5 0.027 5.8E-07 59.5 12.1 86 174-267 54-143 (325)
231 PRK09361 radB DNA repair and r 96.5 0.01 2.3E-07 60.3 8.9 88 174-266 22-116 (225)
232 KOG0991 Replication factor C, 96.5 0.0072 1.6E-07 58.5 6.9 44 156-199 29-72 (333)
233 PF13306 LRR_5: Leucine rich r 96.5 0.0072 1.6E-07 55.3 6.9 113 514-634 12-128 (129)
234 COG0542 clpA ATP-binding subun 96.5 0.012 2.7E-07 68.4 10.0 152 156-326 172-346 (786)
235 TIGR01243 CDC48 AAA family ATP 96.5 0.027 5.8E-07 68.0 13.5 170 156-352 455-657 (733)
236 PRK06526 transposase; Provisio 96.5 0.0026 5.7E-08 65.3 4.1 26 174-199 97-122 (254)
237 COG1484 DnaC DNA replication p 96.4 0.012 2.7E-07 60.5 8.9 74 174-267 104-177 (254)
238 cd01123 Rad51_DMC1_radA Rad51_ 96.4 0.013 2.9E-07 60.1 9.2 92 174-267 18-125 (235)
239 KOG0730 AAA+-type ATPase [Post 96.4 0.039 8.4E-07 62.0 13.0 161 158-341 438-630 (693)
240 PF07693 KAP_NTPase: KAP famil 96.4 0.07 1.5E-06 57.8 15.0 40 160-199 2-44 (325)
241 cd03238 ABC_UvrA The excision 96.4 0.0095 2.1E-07 57.5 7.2 125 174-310 20-161 (176)
242 KOG0652 26S proteasome regulat 96.4 0.045 9.8E-07 53.9 11.6 55 145-199 160-229 (424)
243 TIGR02012 tigrfam_recA protein 96.4 0.0084 1.8E-07 63.3 7.3 86 174-267 54-143 (321)
244 cd01394 radB RadB. The archaea 96.4 0.024 5.2E-07 57.4 10.5 43 174-219 18-60 (218)
245 KOG0733 Nuclear AAA ATPase (VC 96.4 0.035 7.6E-07 61.5 12.0 154 174-352 544-718 (802)
246 PRK04132 replication factor C 96.4 0.048 1E-06 65.1 14.2 152 183-357 574-730 (846)
247 COG2812 DnaX DNA polymerase II 96.4 0.019 4.1E-07 64.1 10.3 184 156-352 18-214 (515)
248 PRK10867 signal recognition pa 96.3 0.11 2.4E-06 57.6 16.0 26 174-199 99-124 (433)
249 PF08423 Rad51: Rad51; InterP 96.3 0.016 3.6E-07 59.7 9.1 92 174-266 37-142 (256)
250 PRK06762 hypothetical protein; 96.3 0.059 1.3E-06 51.8 12.3 24 176-199 3-26 (166)
251 TIGR02238 recomb_DMC1 meiotic 96.3 0.025 5.5E-07 60.0 10.3 91 174-266 95-200 (313)
252 PRK09354 recA recombinase A; P 96.2 0.012 2.6E-07 62.7 7.6 86 174-267 59-148 (349)
253 PRK06696 uridine kinase; Valid 96.2 0.0062 1.3E-07 61.8 5.3 42 158-199 2-46 (223)
254 PRK08699 DNA polymerase III su 96.2 0.05 1.1E-06 58.2 12.3 68 257-325 113-184 (325)
255 PRK07952 DNA replication prote 96.2 0.029 6.3E-07 57.1 9.8 87 163-268 85-173 (244)
256 TIGR03346 chaperone_ClpB ATP-d 96.2 0.017 3.7E-07 70.6 9.6 44 156-199 567-619 (852)
257 PF07728 AAA_5: AAA domain (dy 96.2 0.0048 1E-07 57.4 3.8 42 178-225 2-43 (139)
258 TIGR03345 VI_ClpV1 type VI sec 96.2 0.01 2.2E-07 72.0 7.4 44 156-199 568-620 (852)
259 PRK00771 signal recognition pa 96.1 0.037 8E-07 61.3 10.8 89 174-266 94-184 (437)
260 PF14532 Sigma54_activ_2: Sigm 96.1 0.0028 6.1E-08 58.8 1.8 43 157-199 1-45 (138)
261 cd01131 PilT Pilus retraction 96.1 0.007 1.5E-07 60.0 4.7 110 176-299 2-112 (198)
262 PRK05541 adenylylsulfate kinas 96.1 0.015 3.2E-07 56.6 6.8 36 174-212 6-41 (176)
263 cd01120 RecA-like_NTPases RecA 96.0 0.035 7.5E-07 53.1 9.3 39 177-218 1-39 (165)
264 CHL00095 clpC Clp protease ATP 96.0 0.017 3.7E-07 70.4 8.5 44 156-199 511-563 (821)
265 COG1223 Predicted ATPase (AAA+ 96.0 0.16 3.4E-06 50.5 13.2 168 156-351 123-318 (368)
266 PLN03187 meiotic recombination 96.0 0.039 8.4E-07 59.1 10.1 92 174-266 125-230 (344)
267 KOG0734 AAA+-type ATPase conta 96.0 0.022 4.8E-07 61.9 8.0 43 157-199 307-361 (752)
268 cd03216 ABC_Carb_Monos_I This 96.0 0.01 2.2E-07 56.8 5.2 116 174-299 25-145 (163)
269 COG2884 FtsE Predicted ATPase 96.0 0.038 8.3E-07 52.2 8.6 124 174-302 27-203 (223)
270 PRK15455 PrkA family serine pr 96.0 0.0081 1.8E-07 67.1 4.9 44 156-199 78-127 (644)
271 COG1136 SalX ABC-type antimicr 96.0 0.025 5.4E-07 56.1 7.9 125 174-302 30-209 (226)
272 PRK04301 radA DNA repair and r 96.0 0.049 1.1E-06 58.5 10.9 58 174-233 101-162 (317)
273 PF00560 LRR_1: Leucine Rich R 95.9 0.0033 7.1E-08 37.1 1.0 18 586-603 2-19 (22)
274 COG0572 Udk Uridine kinase [Nu 95.9 0.022 4.7E-07 55.9 7.2 79 174-258 7-85 (218)
275 KOG0731 AAA+-type ATPase conta 95.9 0.089 1.9E-06 61.1 13.1 173 156-355 313-521 (774)
276 PLN00020 ribulose bisphosphate 95.9 0.026 5.7E-07 59.7 8.1 27 173-199 146-172 (413)
277 COG4608 AppF ABC-type oligopep 95.9 0.033 7.1E-07 56.3 8.5 127 174-304 38-178 (268)
278 TIGR01425 SRP54_euk signal rec 95.9 0.27 5.9E-06 54.1 16.2 26 174-199 99-124 (429)
279 COG1618 Predicted nucleotide k 95.9 0.0094 2E-07 54.6 4.1 24 176-199 6-29 (179)
280 cd00561 CobA_CobO_BtuR ATP:cor 95.9 0.035 7.5E-07 52.1 8.0 117 176-297 3-139 (159)
281 PF00154 RecA: recA bacterial 95.9 0.11 2.5E-06 54.7 12.7 88 174-269 52-143 (322)
282 TIGR02239 recomb_RAD51 DNA rep 95.9 0.047 1E-06 58.2 10.1 59 174-233 95-156 (316)
283 cd03115 SRP The signal recogni 95.9 0.028 6.2E-07 54.4 7.8 23 177-199 2-24 (173)
284 cd01133 F1-ATPase_beta F1 ATP 95.8 0.04 8.8E-07 56.6 9.0 92 173-267 67-173 (274)
285 TIGR03877 thermo_KaiC_1 KaiC d 95.8 0.044 9.6E-07 56.1 9.5 49 174-227 20-68 (237)
286 PRK14722 flhF flagellar biosyn 95.8 0.034 7.3E-07 60.1 8.8 89 174-267 136-225 (374)
287 COG2607 Predicted ATPase (AAA+ 95.8 0.033 7.1E-07 54.6 7.8 44 156-199 62-109 (287)
288 KOG0728 26S proteasome regulat 95.8 0.17 3.8E-06 49.6 12.6 181 156-360 148-365 (404)
289 cd01121 Sms Sms (bacterial rad 95.8 0.041 8.8E-07 59.9 9.4 84 174-266 81-167 (372)
290 cd03222 ABC_RNaseL_inhibitor T 95.8 0.014 3E-07 56.4 5.3 27 173-199 23-49 (177)
291 KOG0735 AAA+-type ATPase [Post 95.8 0.018 3.9E-07 64.8 6.6 72 175-267 431-504 (952)
292 PRK08939 primosomal protein Dn 95.8 0.048 1E-06 57.8 9.6 117 158-295 135-260 (306)
293 COG1875 NYN ribonuclease and A 95.8 0.018 4E-07 59.8 6.2 40 157-196 227-266 (436)
294 cd03214 ABC_Iron-Siderophores_ 95.8 0.025 5.5E-07 55.2 7.1 121 174-299 24-161 (180)
295 KOG1969 DNA replication checkp 95.8 0.022 4.8E-07 64.4 7.2 72 174-268 325-398 (877)
296 TIGR00959 ffh signal recogniti 95.8 0.037 8.1E-07 61.1 9.0 91 174-266 98-191 (428)
297 TIGR03499 FlhF flagellar biosy 95.8 0.041 8.8E-07 57.8 9.0 88 174-266 193-281 (282)
298 PF00485 PRK: Phosphoribulokin 95.7 0.078 1.7E-06 52.4 10.6 83 177-261 1-87 (194)
299 PRK06547 hypothetical protein; 95.7 0.014 3.1E-07 56.1 5.0 35 165-199 5-39 (172)
300 COG0470 HolB ATPase involved i 95.7 0.05 1.1E-06 59.0 10.0 138 156-312 3-167 (325)
301 cd03246 ABCC_Protease_Secretio 95.7 0.02 4.3E-07 55.5 6.1 26 174-199 27-52 (173)
302 COG1102 Cmk Cytidylate kinase 95.7 0.017 3.6E-07 53.0 5.0 45 177-235 2-46 (179)
303 cd03247 ABCC_cytochrome_bd The 95.7 0.033 7.1E-07 54.3 7.6 127 174-310 27-169 (178)
304 KOG0744 AAA+-type ATPase [Post 95.7 0.023 4.9E-07 58.0 6.2 80 175-267 177-260 (423)
305 PRK10733 hflB ATP-dependent me 95.7 0.12 2.6E-06 61.1 13.3 149 176-351 186-356 (644)
306 TIGR01069 mutS2 MutS2 family p 95.6 0.026 5.7E-07 67.5 7.9 114 256-380 401-522 (771)
307 PRK06067 flagellar accessory p 95.6 0.065 1.4E-06 54.9 9.8 88 174-267 24-130 (234)
308 COG1126 GlnQ ABC-type polar am 95.6 0.045 9.8E-07 53.0 7.8 125 174-302 27-202 (240)
309 PRK13531 regulatory ATPase Rav 95.6 0.033 7.2E-07 61.6 7.8 42 156-199 22-63 (498)
310 PRK10463 hydrogenase nickel in 95.6 0.056 1.2E-06 56.0 8.9 35 165-199 94-128 (290)
311 TIGR02858 spore_III_AA stage I 95.5 0.066 1.4E-06 55.5 9.4 125 163-299 98-232 (270)
312 PHA00729 NTP-binding motif con 95.5 0.018 3.8E-07 57.3 4.9 36 164-199 6-41 (226)
313 PF13306 LRR_5: Leucine rich r 95.5 0.024 5.2E-07 51.8 5.4 103 532-641 8-112 (129)
314 cd03223 ABCD_peroxisomal_ALDP 95.5 0.05 1.1E-06 52.3 7.7 116 174-299 26-151 (166)
315 PF13238 AAA_18: AAA domain; P 95.4 0.011 2.4E-07 54.0 3.0 22 178-199 1-22 (129)
316 PF00560 LRR_1: Leucine Rich R 95.4 0.008 1.7E-07 35.4 1.3 21 561-582 1-21 (22)
317 PLN03186 DNA repair protein RA 95.4 0.11 2.4E-06 55.7 10.9 59 174-234 122-184 (342)
318 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.4 0.044 9.5E-07 51.2 7.0 103 174-299 25-130 (144)
319 KOG0736 Peroxisome assembly fa 95.4 0.15 3.3E-06 58.3 12.1 90 156-268 674-775 (953)
320 PRK11034 clpA ATP-dependent Cl 95.4 0.047 1E-06 65.0 8.7 44 156-199 460-512 (758)
321 PRK07667 uridine kinase; Provi 95.4 0.021 4.5E-07 56.4 5.0 37 163-199 3-41 (193)
322 TIGR03881 KaiC_arch_4 KaiC dom 95.4 0.1 2.2E-06 53.2 10.2 53 174-232 19-71 (229)
323 TIGR02236 recomb_radA DNA repa 95.4 0.11 2.4E-06 55.7 10.9 58 174-233 94-155 (310)
324 PRK11889 flhF flagellar biosyn 95.4 0.077 1.7E-06 57.0 9.3 89 174-267 240-330 (436)
325 TIGR00064 ftsY signal recognit 95.4 0.079 1.7E-06 55.2 9.4 90 174-267 71-164 (272)
326 cd03230 ABC_DR_subfamily_A Thi 95.3 0.02 4.3E-07 55.5 4.6 120 174-300 25-159 (173)
327 PRK14974 cell division protein 95.3 0.12 2.5E-06 55.4 10.6 90 174-267 139-232 (336)
328 cd03228 ABCC_MRP_Like The MRP 95.3 0.05 1.1E-06 52.6 7.3 126 174-310 27-167 (171)
329 cd02019 NK Nucleoside/nucleoti 95.3 0.014 2.9E-07 46.6 2.7 23 177-199 1-23 (69)
330 PF01695 IstB_IS21: IstB-like 95.3 0.027 5.8E-07 54.6 5.2 74 174-268 46-119 (178)
331 PRK08233 hypothetical protein; 95.3 0.015 3.3E-07 56.9 3.5 25 175-199 3-27 (182)
332 COG0468 RecA RecA/RadA recombi 95.3 0.08 1.7E-06 54.6 8.8 89 174-266 59-150 (279)
333 cd01129 PulE-GspE PulE/GspE Th 95.3 0.035 7.6E-07 57.6 6.3 124 157-297 62-185 (264)
334 COG0541 Ffh Signal recognition 95.2 1.2 2.6E-05 48.3 17.4 57 174-234 99-157 (451)
335 PRK04328 hypothetical protein; 95.2 0.078 1.7E-06 54.7 8.7 40 174-216 22-61 (249)
336 KOG0743 AAA+-type ATPase [Post 95.2 0.77 1.7E-05 49.8 16.1 152 175-365 235-417 (457)
337 PF00006 ATP-synt_ab: ATP synt 95.2 0.099 2.1E-06 52.1 9.0 93 166-266 5-114 (215)
338 COG1066 Sms Predicted ATP-depe 95.2 0.12 2.5E-06 55.2 9.8 94 164-267 80-178 (456)
339 PRK12678 transcription termina 95.2 0.034 7.4E-07 62.0 6.2 99 165-267 405-513 (672)
340 COG0464 SpoVK ATPases of the A 95.2 0.24 5.3E-06 57.0 13.6 133 174-329 275-426 (494)
341 PTZ00035 Rad51 protein; Provis 95.2 0.19 4.1E-06 54.2 11.7 92 174-267 117-223 (337)
342 PRK09270 nucleoside triphospha 95.2 0.026 5.5E-07 57.6 5.0 27 173-199 31-57 (229)
343 PF13671 AAA_33: AAA domain; P 95.2 0.016 3.5E-07 54.1 3.3 23 177-199 1-23 (143)
344 PRK13539 cytochrome c biogenes 95.1 0.047 1E-06 54.7 6.7 26 174-199 27-52 (207)
345 PRK00409 recombination and DNA 95.1 0.41 8.9E-06 57.7 15.5 182 174-380 326-527 (782)
346 cd00267 ABC_ATPase ABC (ATP-bi 95.1 0.026 5.6E-07 53.7 4.5 117 174-301 24-145 (157)
347 PF07726 AAA_3: ATPase family 95.1 0.015 3.3E-07 51.6 2.6 28 178-208 2-29 (131)
348 COG1419 FlhF Flagellar GTP-bin 95.1 0.17 3.6E-06 54.4 10.8 99 163-266 187-290 (407)
349 PRK12724 flagellar biosynthesi 95.1 0.074 1.6E-06 57.9 8.3 25 175-199 223-247 (432)
350 cd03229 ABC_Class3 This class 95.1 0.027 5.9E-07 54.8 4.7 26 174-199 25-50 (178)
351 PRK12723 flagellar biosynthesi 95.1 0.11 2.4E-06 56.7 9.7 90 174-267 173-264 (388)
352 TIGR00150 HI0065_YjeE ATPase, 95.0 0.04 8.6E-07 50.0 5.2 38 162-199 7-46 (133)
353 COG0563 Adk Adenylate kinase a 95.0 0.033 7.2E-07 53.8 5.0 23 177-199 2-24 (178)
354 PTZ00301 uridine kinase; Provi 95.0 0.02 4.4E-07 56.9 3.6 25 175-199 3-27 (210)
355 PRK05480 uridine/cytidine kina 95.0 0.02 4.3E-07 57.5 3.6 27 173-199 4-30 (209)
356 PF12775 AAA_7: P-loop contain 95.0 0.041 9E-07 57.3 6.0 88 164-267 23-110 (272)
357 TIGR00554 panK_bact pantothena 95.0 0.16 3.4E-06 53.1 10.2 27 173-199 60-86 (290)
358 PRK12726 flagellar biosynthesi 95.0 0.14 3E-06 54.9 9.7 89 174-267 205-295 (407)
359 TIGR03575 selen_PSTK_euk L-ser 94.9 0.13 2.7E-06 55.0 9.4 22 178-199 2-23 (340)
360 PRK03839 putative kinase; Prov 94.9 0.02 4.4E-07 55.9 3.3 23 177-199 2-24 (180)
361 COG5238 RNA1 Ran GTPase-activa 94.9 0.033 7.1E-07 55.4 4.6 44 530-574 86-133 (388)
362 TIGR00708 cobA cob(I)alamin ad 94.9 0.13 2.8E-06 49.0 8.4 119 175-296 5-140 (173)
363 TIGR00235 udk uridine kinase. 94.9 0.022 4.8E-07 57.0 3.6 26 174-199 5-30 (207)
364 PRK11823 DNA repair protein Ra 94.9 0.083 1.8E-06 59.3 8.4 84 174-266 79-165 (446)
365 cd02025 PanK Pantothenate kina 94.9 0.11 2.5E-06 52.2 8.6 23 177-199 1-23 (220)
366 PRK08533 flagellar accessory p 94.9 0.14 3.1E-06 51.9 9.4 49 174-227 23-71 (230)
367 PF13481 AAA_25: AAA domain; P 94.9 0.11 2.4E-06 51.4 8.4 42 175-217 32-81 (193)
368 PTZ00088 adenylate kinase 1; P 94.9 0.026 5.7E-07 57.0 3.9 22 178-199 9-30 (229)
369 KOG3864 Uncharacterized conser 94.8 0.0033 7.1E-08 59.8 -2.4 64 751-820 124-190 (221)
370 COG4618 ArpD ABC-type protease 94.8 0.037 8.1E-07 60.2 5.0 26 174-199 361-386 (580)
371 TIGR01360 aden_kin_iso1 adenyl 94.8 0.024 5.2E-07 55.8 3.5 26 174-199 2-27 (188)
372 PF12061 DUF3542: Protein of u 94.8 0.036 7.9E-07 56.0 4.6 75 11-92 298-372 (402)
373 KOG3347 Predicted nucleotide k 94.8 0.045 9.8E-07 49.4 4.7 70 175-257 7-76 (176)
374 cd01124 KaiC KaiC is a circadi 94.8 0.09 2E-06 51.6 7.6 45 177-226 1-45 (187)
375 PF00910 RNA_helicase: RNA hel 94.8 0.02 4.3E-07 50.4 2.5 22 178-199 1-22 (107)
376 PRK08972 fliI flagellum-specif 94.8 0.076 1.7E-06 58.2 7.4 89 174-267 161-262 (444)
377 COG4088 Predicted nucleotide k 94.7 0.024 5.2E-07 54.1 3.0 24 176-199 2-25 (261)
378 KOG0727 26S proteasome regulat 94.7 0.42 9.2E-06 47.1 11.4 43 157-199 158-213 (408)
379 KOG2035 Replication factor C, 94.7 1.5 3.4E-05 44.2 15.4 208 156-381 15-261 (351)
380 PRK06002 fliI flagellum-specif 94.7 0.079 1.7E-06 58.4 7.4 89 174-267 164-264 (450)
381 PRK00625 shikimate kinase; Pro 94.7 0.024 5.3E-07 54.5 3.0 23 177-199 2-24 (173)
382 cd03217 ABC_FeS_Assembly ABC-t 94.7 0.063 1.4E-06 53.4 6.1 25 174-198 25-49 (200)
383 PRK05703 flhF flagellar biosyn 94.7 0.1 2.2E-06 58.1 8.3 87 175-266 221-308 (424)
384 PRK09519 recA DNA recombinatio 94.7 0.086 1.9E-06 62.1 7.9 86 174-267 59-148 (790)
385 PRK04040 adenylate kinase; Pro 94.6 0.028 6E-07 55.1 3.3 24 176-199 3-26 (188)
386 PRK13543 cytochrome c biogenes 94.6 0.12 2.6E-06 52.0 8.1 26 174-199 36-61 (214)
387 cd03215 ABC_Carb_Monos_II This 94.6 0.11 2.4E-06 50.7 7.5 26 174-199 25-50 (182)
388 COG0488 Uup ATPase components 94.6 0.24 5.1E-06 56.5 11.0 134 174-311 347-510 (530)
389 TIGR00390 hslU ATP-dependent p 94.5 0.079 1.7E-06 57.4 6.7 44 156-199 14-71 (441)
390 cd03231 ABC_CcmA_heme_exporter 94.5 0.089 1.9E-06 52.4 6.9 26 174-199 25-50 (201)
391 cd03283 ABC_MutS-like MutS-lik 94.5 0.068 1.5E-06 52.9 5.9 23 176-198 26-48 (199)
392 PF13245 AAA_19: Part of AAA d 94.5 0.099 2.1E-06 42.4 5.8 26 174-199 9-34 (76)
393 TIGR00416 sms DNA repair prote 94.5 0.15 3.3E-06 57.3 9.2 94 164-266 81-179 (454)
394 PF03308 ArgK: ArgK protein; 94.5 0.07 1.5E-06 53.6 5.8 63 162-225 14-78 (266)
395 KOG0729 26S proteasome regulat 94.5 0.075 1.6E-06 52.6 5.8 87 157-267 180-280 (435)
396 cd02028 UMPK_like Uridine mono 94.5 0.076 1.6E-06 51.6 6.0 23 177-199 1-23 (179)
397 PF03205 MobB: Molybdopterin g 94.5 0.051 1.1E-06 50.3 4.5 39 176-216 1-39 (140)
398 TIGR03878 thermo_KaiC_2 KaiC d 94.4 0.08 1.7E-06 54.9 6.5 40 174-216 35-74 (259)
399 cd03281 ABC_MSH5_euk MutS5 hom 94.4 0.038 8.2E-07 55.4 3.9 23 175-197 29-51 (213)
400 PF01583 APS_kinase: Adenylyls 94.4 0.044 9.5E-07 51.2 4.0 36 175-213 2-37 (156)
401 TIGR01359 UMP_CMP_kin_fam UMP- 94.4 0.026 5.7E-07 55.3 2.7 23 177-199 1-23 (183)
402 PRK14721 flhF flagellar biosyn 94.4 0.22 4.8E-06 54.8 10.0 61 174-235 190-251 (420)
403 PRK10416 signal recognition pa 94.4 0.36 7.9E-06 51.5 11.4 26 174-199 113-138 (318)
404 KOG1532 GTPase XAB1, interacts 94.4 0.044 9.6E-07 54.5 4.0 26 174-199 18-43 (366)
405 COG0465 HflB ATP-dependent Zn 94.4 0.27 5.9E-06 56.0 10.8 172 156-354 152-357 (596)
406 cd02027 APSK Adenosine 5'-phos 94.4 0.15 3.2E-06 47.9 7.5 23 177-199 1-23 (149)
407 PF10236 DAP3: Mitochondrial r 94.4 0.73 1.6E-05 49.1 13.6 49 307-355 258-306 (309)
408 PRK05973 replicative DNA helic 94.3 0.23 5.1E-06 50.1 9.3 49 174-227 63-111 (237)
409 KOG3864 Uncharacterized conser 94.3 0.0064 1.4E-07 57.9 -1.9 71 716-790 119-191 (221)
410 PF08433 KTI12: Chromatin asso 94.3 0.059 1.3E-06 55.9 5.0 24 176-199 2-25 (270)
411 PF02562 PhoH: PhoH-like prote 94.3 0.06 1.3E-06 52.9 4.7 53 158-213 4-56 (205)
412 PRK05986 cob(I)alamin adenolsy 94.2 0.19 4E-06 48.6 7.9 119 174-296 21-158 (191)
413 COG1428 Deoxynucleoside kinase 94.2 0.038 8.2E-07 53.5 3.2 49 175-229 4-52 (216)
414 PRK13765 ATP-dependent proteas 94.2 0.09 2E-06 61.2 6.9 73 156-233 33-105 (637)
415 PRK00131 aroK shikimate kinase 94.2 0.041 8.8E-07 53.4 3.6 26 174-199 3-28 (175)
416 PRK06995 flhF flagellar biosyn 94.2 0.18 3.8E-06 56.5 8.8 59 175-234 256-315 (484)
417 TIGR02902 spore_lonB ATP-depen 94.2 0.073 1.6E-06 61.3 6.0 44 156-199 67-110 (531)
418 PF06309 Torsin: Torsin; Inte 94.2 0.088 1.9E-06 46.8 5.1 44 156-199 27-77 (127)
419 cd03213 ABCG_EPDR ABCG transpo 94.2 0.11 2.3E-06 51.5 6.4 26 174-199 34-59 (194)
420 PF05970 PIF1: PIF1-like helic 94.2 0.12 2.5E-06 56.8 7.3 37 163-199 10-46 (364)
421 cd02023 UMPK Uridine monophosp 94.1 0.033 7.1E-07 55.4 2.7 23 177-199 1-23 (198)
422 PRK06217 hypothetical protein; 94.1 0.037 8E-07 54.2 3.0 23 177-199 3-25 (183)
423 COG0396 sufC Cysteine desulfur 94.1 0.16 3.5E-06 49.8 7.2 63 248-310 153-218 (251)
424 COG1121 ZnuC ABC-type Mn/Zn tr 94.1 0.18 4E-06 50.9 7.9 123 174-299 29-202 (254)
425 PF00625 Guanylate_kin: Guanyl 94.1 0.069 1.5E-06 52.3 4.9 37 175-214 2-38 (183)
426 cd03369 ABCC_NFT1 Domain 2 of 94.1 0.22 4.7E-06 49.9 8.6 26 174-199 33-58 (207)
427 PRK12597 F0F1 ATP synthase sub 94.1 0.17 3.8E-06 56.2 8.4 93 173-267 141-247 (461)
428 PRK05439 pantothenate kinase; 94.1 0.38 8.2E-06 50.7 10.5 27 173-199 84-110 (311)
429 cd02024 NRK1 Nicotinamide ribo 94.1 0.035 7.6E-07 54.0 2.7 23 177-199 1-23 (187)
430 KOG0739 AAA+-type ATPase [Post 94.1 0.93 2E-05 46.1 12.5 168 156-351 135-334 (439)
431 PRK08927 fliI flagellum-specif 94.1 0.23 4.9E-06 54.8 9.1 89 174-267 157-258 (442)
432 COG0467 RAD55 RecA-superfamily 94.1 0.11 2.5E-06 54.0 6.7 54 173-232 21-74 (260)
433 TIGR02322 phosphon_PhnN phosph 94.0 0.042 9.2E-07 53.6 3.3 24 176-199 2-25 (179)
434 PF13086 AAA_11: AAA domain; P 94.0 0.12 2.6E-06 52.8 6.8 53 177-229 19-75 (236)
435 COG1703 ArgK Putative periplas 94.0 0.088 1.9E-06 53.7 5.4 63 164-227 38-102 (323)
436 KOG0737 AAA+-type ATPase [Post 94.0 0.64 1.4E-05 49.0 11.7 30 174-206 126-155 (386)
437 PF06745 KaiC: KaiC; InterPro 94.0 0.059 1.3E-06 54.9 4.3 88 174-266 18-124 (226)
438 PRK05922 type III secretion sy 94.0 0.15 3.2E-06 56.2 7.6 90 173-267 155-257 (434)
439 PRK00889 adenylylsulfate kinas 94.0 0.054 1.2E-06 52.6 3.8 26 174-199 3-28 (175)
440 PRK08149 ATP synthase SpaL; Va 94.0 0.22 4.7E-06 54.9 8.8 90 173-267 149-251 (428)
441 cd01136 ATPase_flagellum-secre 94.0 0.26 5.5E-06 52.4 9.0 90 173-267 67-169 (326)
442 cd02020 CMPK Cytidine monophos 94.0 0.039 8.5E-07 51.7 2.7 23 177-199 1-23 (147)
443 TIGR02655 circ_KaiC circadian 93.9 0.27 5.9E-06 56.1 10.0 97 164-266 250-362 (484)
444 PF13504 LRR_7: Leucine rich r 93.9 0.036 7.8E-07 30.3 1.4 14 586-599 3-16 (17)
445 PRK10751 molybdopterin-guanine 93.9 0.056 1.2E-06 51.6 3.7 26 174-199 5-30 (173)
446 PRK07132 DNA polymerase III su 93.9 1.4 3.1E-05 46.4 14.5 167 163-357 5-184 (299)
447 cd00227 CPT Chloramphenicol (C 93.9 0.05 1.1E-06 52.8 3.5 25 175-199 2-26 (175)
448 TIGR03498 FliI_clade3 flagella 93.9 0.13 2.9E-06 56.5 7.0 90 174-267 139-240 (418)
449 cd01135 V_A-ATPase_B V/A-type 93.9 0.26 5.7E-06 50.6 8.6 94 173-267 67-176 (276)
450 PF00158 Sigma54_activat: Sigm 93.9 0.078 1.7E-06 50.8 4.7 44 156-199 1-46 (168)
451 COG1124 DppF ABC-type dipeptid 93.9 0.068 1.5E-06 52.9 4.2 26 174-199 32-57 (252)
452 TIGR02030 BchI-ChlI magnesium 93.9 0.094 2E-06 56.2 5.7 44 156-199 6-49 (337)
453 cd00544 CobU Adenosylcobinamid 93.8 0.28 6.1E-06 47.0 8.3 79 178-266 2-82 (169)
454 PRK13949 shikimate kinase; Pro 93.8 0.051 1.1E-06 52.2 3.2 23 177-199 3-25 (169)
455 TIGR01420 pilT_fam pilus retra 93.8 0.074 1.6E-06 57.7 4.8 112 174-298 121-232 (343)
456 COG3598 RepA RecA-family ATPas 93.8 0.19 4.2E-06 51.5 7.2 60 177-236 91-158 (402)
457 COG1131 CcmA ABC-type multidru 93.8 0.2 4.3E-06 53.0 7.9 26 174-199 30-55 (293)
458 KOG0473 Leucine-rich repeat pr 93.8 0.002 4.3E-08 62.3 -6.4 85 532-618 38-122 (326)
459 PRK13947 shikimate kinase; Pro 93.7 0.052 1.1E-06 52.5 3.2 23 177-199 3-25 (171)
460 cd02021 GntK Gluconate kinase 93.7 0.045 9.7E-07 51.6 2.7 23 177-199 1-23 (150)
461 PRK00279 adk adenylate kinase; 93.7 0.2 4.3E-06 50.5 7.5 23 177-199 2-24 (215)
462 cd01130 VirB11-like_ATPase Typ 93.7 0.061 1.3E-06 52.8 3.6 105 163-275 14-118 (186)
463 KOG0473 Leucine-rich repeat pr 93.7 0.0025 5.5E-08 61.6 -5.8 94 548-644 30-123 (326)
464 TIGR00764 lon_rel lon-related 93.7 0.2 4.4E-06 58.5 8.4 72 156-232 20-91 (608)
465 COG4133 CcmA ABC-type transpor 93.7 0.26 5.6E-06 46.8 7.4 52 245-296 136-190 (209)
466 PRK05201 hslU ATP-dependent pr 93.6 0.18 3.9E-06 54.8 7.3 44 156-199 17-74 (443)
467 PRK14530 adenylate kinase; Pro 93.6 0.054 1.2E-06 54.6 3.3 24 176-199 4-27 (215)
468 KOG0726 26S proteasome regulat 93.6 0.24 5.2E-06 49.9 7.4 44 156-199 187-243 (440)
469 PRK06851 hypothetical protein; 93.5 0.78 1.7E-05 49.5 11.9 55 157-217 200-254 (367)
470 PRK10875 recD exonuclease V su 93.5 0.18 3.9E-06 58.7 7.6 55 175-229 167-221 (615)
471 PRK09280 F0F1 ATP synthase sub 93.5 0.27 5.9E-06 54.5 8.6 93 173-267 142-248 (463)
472 PRK14723 flhF flagellar biosyn 93.5 0.27 5.9E-06 57.9 9.0 87 175-267 185-273 (767)
473 PF08477 Miro: Miro-like prote 93.5 0.059 1.3E-06 48.3 3.0 22 178-199 2-23 (119)
474 TIGR00073 hypB hydrogenase acc 93.5 0.075 1.6E-06 53.2 4.0 31 169-199 16-46 (207)
475 COG1936 Predicted nucleotide k 93.5 0.055 1.2E-06 50.5 2.7 20 177-196 2-21 (180)
476 KOG0735 AAA+-type ATPase [Post 93.5 1.4 3.1E-05 50.3 13.9 152 176-354 702-872 (952)
477 TIGR03263 guanyl_kin guanylate 93.5 0.056 1.2E-06 52.8 3.0 24 176-199 2-25 (180)
478 PF03193 DUF258: Protein of un 93.5 0.1 2.3E-06 49.0 4.5 35 162-199 25-59 (161)
479 PF03266 NTPase_1: NTPase; In 93.5 0.059 1.3E-06 51.6 3.0 22 178-199 2-23 (168)
480 CHL00081 chlI Mg-protoporyphyr 93.4 0.1 2.3E-06 55.9 5.1 44 156-199 19-62 (350)
481 PF13604 AAA_30: AAA domain; P 93.4 0.12 2.5E-06 51.2 5.1 38 162-199 5-42 (196)
482 PRK15453 phosphoribulokinase; 93.4 0.42 9E-06 49.2 9.0 80 174-256 4-89 (290)
483 PRK00300 gmk guanylate kinase; 93.3 0.069 1.5E-06 53.4 3.4 26 174-199 4-29 (205)
484 PRK06936 type III secretion sy 93.3 0.23 4.9E-06 54.8 7.5 90 173-267 160-262 (439)
485 cd00464 SK Shikimate kinase (S 93.3 0.065 1.4E-06 50.7 3.0 22 178-199 2-23 (154)
486 PRK05057 aroK shikimate kinase 93.3 0.074 1.6E-06 51.3 3.4 25 175-199 4-28 (172)
487 PRK05800 cobU adenosylcobinami 93.3 0.26 5.7E-06 47.3 7.1 83 176-266 2-85 (170)
488 PRK09099 type III secretion sy 93.3 0.29 6.2E-06 54.2 8.3 91 173-267 161-263 (441)
489 COG2019 AdkA Archaeal adenylat 93.3 0.077 1.7E-06 49.0 3.2 47 175-234 4-50 (189)
490 COG3640 CooC CO dehydrogenase 93.2 0.14 3.1E-06 50.2 5.1 42 177-220 2-43 (255)
491 PRK10078 ribose 1,5-bisphospho 93.2 0.067 1.5E-06 52.5 3.0 24 176-199 3-26 (186)
492 cd01132 F1_ATPase_alpha F1 ATP 93.2 0.29 6.2E-06 50.3 7.6 89 174-267 68-171 (274)
493 cd00071 GMPK Guanosine monopho 93.2 0.063 1.4E-06 49.6 2.6 23 177-199 1-23 (137)
494 KOG2170 ATPase of the AAA+ sup 93.1 0.23 4.9E-06 50.7 6.5 99 156-269 84-190 (344)
495 smart00534 MUTSac ATPase domai 93.1 0.045 9.7E-07 53.7 1.6 21 177-197 1-21 (185)
496 cd00820 PEPCK_HprK Phosphoenol 93.1 0.078 1.7E-06 45.9 2.9 23 174-196 14-36 (107)
497 PRK13407 bchI magnesium chelat 93.1 0.11 2.5E-06 55.5 4.8 44 156-199 10-53 (334)
498 PTZ00185 ATPase alpha subunit; 93.1 0.47 1E-05 52.7 9.4 92 174-267 188-299 (574)
499 TIGR01313 therm_gnt_kin carboh 93.1 0.061 1.3E-06 51.5 2.5 22 178-199 1-22 (163)
500 PRK13975 thymidylate kinase; P 93.1 0.078 1.7E-06 52.6 3.4 24 176-199 3-26 (196)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=5.9e-101 Score=897.61 Aligned_cols=841 Identities=41% Similarity=0.688 Sum_probs=711.3
Q ss_pred HHHHHHHhhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002657 14 ILSHCLNCTLSKAACISQLEDNLVDLQAKLEKLIEAKNDVMMRVVIAERQQMRCLNQVQGWFSRVQSVETEAGQLIRDGS 93 (896)
Q Consensus 14 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~a~~~~~~~~~~~~~Wl~~v~~~~~d~ed~ld~~~ 93 (896)
.+++++..+.+++..+.+.++.+..++++|..|++++.|+ ++++. ....+..|.+.+++++|+++|+++.|.
T Consensus 8 ~~~~~~~~l~~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~-------~a~~~-~~~~~~~~~e~~~~~~~~~e~~~~~~~ 79 (889)
T KOG4658|consen 8 GVEKLDQLLNRESECLDGKDNYILELKENLKALQSALEDL-------DAKRD-DLERRVNWEEDVGDLVYLAEDIIWLFL 79 (889)
T ss_pred ehhhHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHH-------Hhhcc-hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888999999999999999999999999999994 44443 236688999999999999999999986
Q ss_pred HHhh----------------hhhcCCCCCCCcccccchHHHHHHHHHHHHHHHcCCCcceecc-ccCCcccccCCCCCcc
Q 002657 94 QEIE----------------KLCLGGYCSKNCKSSYNFGKEVAQKVQLVETLMGEKDFAVVAQ-RSQESVADERPTEPIV 156 (896)
Q Consensus 94 ~~~~----------------~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 156 (896)
.+.. +.|..++|.+.....|.+++++.+++++++.+..++.|..+.. ..|......+|..+..
T Consensus 80 v~~~~~~~~~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 159 (889)
T KOG4658|consen 80 VEEIERKANDLLSTRSVERQRLCLCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPREKVETRPIQSES 159 (889)
T ss_pred HHHHHHHHhHHhhhhHHHHHHHhhhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccchhhcccCCCCccc
Confidence 5432 1244466666777778889999999999999988776766554 2333445555555533
Q ss_pred -cchHHHHHHHHHHhccCCCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHhcCCCC
Q 002657 157 -VGLQSQLEQVWRCLVEEPAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDLRLENIQEIIGGKIGLMN 235 (896)
Q Consensus 157 -vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~ 235 (896)
||.+..++++++.|.+++..+++|+||||+||||||++++|+...++.+|+.++||+||++++...++.+|++.++...
T Consensus 160 ~VG~e~~~~kl~~~L~~d~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~ 239 (889)
T KOG4658|consen 160 DVGLETMLEKLWNRLMEDDVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLD 239 (889)
T ss_pred cccHHHHHHHHHHHhccCCCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCC
Confidence 9999999999999999888999999999999999999999999338999999999999999999999999999999877
Q ss_pred ccccccCHHHHHHHHHHHhCCceEEEEEecCCCccccccccccCCCCCCCCcEEEEecCCHHHHhh-hccCcceeccCCC
Q 002657 236 ESWKSKSLQEKSLDIFKILGEKKFVLLLDDLWQRVDLTKVGVPLPSPQSSASKVVFTTRSEEICGL-MEAQKKFKVACLS 314 (896)
Q Consensus 236 ~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~~~s~iivTtR~~~v~~~-~~~~~~~~l~~L~ 314 (896)
..+.....++++..+.+.|++|||+|||||||+..+|+.++.++| ...+||||++|||++.||.. +++...+++..|+
T Consensus 240 ~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p-~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~ 318 (889)
T KOG4658|consen 240 EEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFP-SRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLT 318 (889)
T ss_pred cccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCC-CccCCeEEEEEeccHhhhhccccCCccccccccC
Confidence 666666668999999999999999999999999999999999999 77899999999999999998 8888999999999
Q ss_pred hHhHHHHHHHHhcCcccCCCCChHHHHHHHHHHhCCCchHHHHHHHhhcCCCCHHHHHHHHHHHhcc-cCCCCCCccchh
Q 002657 315 DKDAWELFCHKVGEETLNNHPDIPELAQTVAKECGGMPLALITIGRAMSCKRTPQEWRHAIQVLRTT-ASEFPGLGNEVY 393 (896)
Q Consensus 315 ~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~~~~l~~~~~~~~w~~~l~~l~~~-~~~~~~~~~~~~ 393 (896)
++|||.||++.++.......+.++++|++|+++|+|+|||++++|+.|+.+.+.++|+++.+.+.+. ..+.+++.+.++
T Consensus 319 ~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~ 398 (889)
T KOG4658|consen 319 PEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESIL 398 (889)
T ss_pred ccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhH
Confidence 9999999999999887666677999999999999999999999999999999999999999999887 666667778999
Q ss_pred hhHHhhhcCCCcchhhHHhhhhccCCCCccccHHHHHHHHHhcCCCCc-hhhhhHHHHHHHHHHHHHHhccccccC----
Q 002657 394 PLLKFSYESLPNDIVRSCLLYCSLYPEDYRISKENLIDCWIGESFLNE-RVKFEVQNQGYYILGILVHACLLEEVG---- 468 (896)
Q Consensus 394 ~~l~~sy~~L~~~~~k~cfl~~~~fp~~~~i~~~~li~~w~a~g~i~~-~~~~~~~~~~~~~l~~L~~~~ll~~~~---- 468 (896)
++|++||+.||+ ++|.||+|||+||+||.|+++.|+.+|+||||+.+ ..+..+++.|+.|+++|++++|++..+
T Consensus 399 ~iLklSyd~L~~-~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~ 477 (889)
T KOG4658|consen 399 PILKLSYDNLPE-ELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGR 477 (889)
T ss_pred HhhhccHhhhhH-HHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccc
Confidence 999999999996 99999999999999999999999999999999998 667889999999999999999999863
Q ss_pred CccchhhHHHHhHHHhhhcccccCCCeEEEEcCCCCccCCCCCCcccceEEEeecccccccccCCCCCCccEEeccccc-
Q 002657 469 EDEVKMHDVIRDMALWIACDSEKKGKKFLVCAGAGLTEDPGVRGWENVSRLSLMQNRIKNLSEIPKCPHLLTLFLNSNE- 547 (896)
Q Consensus 469 ~~~~~mHdlv~d~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~n~- 547 (896)
..+|+|||+|||+|.++|++.+.+.+++++..+.+....|....+..+|++++.+|.+..++.-..+++|++|.+.+|.
T Consensus 478 ~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~ 557 (889)
T KOG4658|consen 478 KETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSD 557 (889)
T ss_pred eeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchhhccCCCCCCccceEEEeecch
Confidence 3799999999999999999999888998888777777788888899999999999999999888899999999999995
Q ss_pred -ccccchhhhccCCCCcEEEccCCcccccccccccCCCCCCEEeccCCCccccchhhhcCCCCCEeeccccccccCCcHH
Q 002657 548 -LKIITNDFFQFMPSLKVLSLSRNRRLTNLQLGISKLVSLQHLDLSLTNIEKLSGELKALVNLKCLNLEYTWSLVTIPQQ 626 (896)
Q Consensus 548 -l~~i~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~Ls~~~i~~lp~~l~~L~~L~~L~L~~~~~l~~lp~~ 626 (896)
+..++..+|..|+.|++|||++|..+.++|++|++|.+||||+|+++.++.+|.++++|.+|.+|++..+..+..+| +
T Consensus 558 ~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~-~ 636 (889)
T KOG4658|consen 558 WLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIP-G 636 (889)
T ss_pred hhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheecccccccccccc-c
Confidence 88999999999999999999999999999999999999999999999999999999999999999999997777775 4
Q ss_pred HHhccccccEEEeeccCCCcccccccccccccCccccHHHhcCCCCCcEEEEEecCchhhhhhhccccccccceeeeeee
Q 002657 627 LIASFLRLHVLRMFGVGDDAFEVASEDSVLFDGGEFLVEELLGLNHLEVLSLTLRSPYALQSFLTSHKLQCCTQALFLQY 706 (896)
Q Consensus 627 ~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~ 706 (896)
+...|++||+|.+...... .+.....++.++.+|+.+.++..+...+..+.....+.+..+.+.+..
T Consensus 637 i~~~L~~Lr~L~l~~s~~~-------------~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~ 703 (889)
T KOG4658|consen 637 ILLELQSLRVLRLPRSALS-------------NDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEG 703 (889)
T ss_pred hhhhcccccEEEeeccccc-------------cchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhcc
Confidence 4777999999999865411 136677888899999988887655533444444444444555555533
Q ss_pred cCCCCeeeeccccccCCcCeEeeccCCCCceEEecCCCcccccc-CCCccEEEeccCCCCCCCccccCCCCCCEEeEecC
Q 002657 707 FKDSTSLVVSSLANLKRLNVLRIADCEKLEELKIDYTGEIQHFG-FRSLCKVEIARCQKLKDLTFLVFAPNLESIEVKSC 785 (896)
Q Consensus 707 ~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~-~~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~c 785 (896)
+ .....+.++..+.+|+.|.|.+|...+. ...+........ |+++..+.+.+|....++.|....|+|+.|.+..|
T Consensus 704 ~--~~~~~~~~~~~l~~L~~L~i~~~~~~e~-~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~ 780 (889)
T KOG4658|consen 704 C--SKRTLISSLGSLGNLEELSILDCGISEI-VIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSC 780 (889)
T ss_pred c--ccceeecccccccCcceEEEEcCCCchh-hcccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecc
Confidence 2 2233346788899999999999977642 223332222223 77899999999999999999888999999999999
Q ss_pred cccchhcccCcccC---CCCCcCccccEe-eccCCCcccccCCCCCCCCCccEEeEcCCcCCCCCCCCCCCccc---cce
Q 002657 786 LALEEIVSDVPEAM---GNLNLFAKLQYL-ELLGLPNLKSIYWKPLSFPRLKEMTIITCNKLKKLPVDSNSAKE---CKI 858 (896)
Q Consensus 786 ~~l~~i~~~~~~~~---~~~~~~~~L~~L-~l~~~~~l~~i~~~~~~~~~L~~L~i~~C~~L~~lp~~~~~~~~---~l~ 858 (896)
..++++.+...... .....|+++..+ .+.+.+.+..+....-.+++|+.+.+..||++..+|........ ...
T Consensus 781 ~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~~~l~~~~ve~~p~l~~~P~~~~~~i~~~~~~~ 860 (889)
T KOG4658|consen 781 RLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPLSFLKLEELIVEECPKLGKLPLLSTLTIVGCEEKL 860 (889)
T ss_pred cccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEecccCccchhheehhcCcccccCccccccceeccccce
Confidence 99999876432111 124557777777 58888888888887778889999999999999999987654322 223
Q ss_pred EEEchHhhhhhcccCcccccccc
Q 002657 859 VIRGDREWWRQLQWEDEATQNVF 881 (896)
Q Consensus 859 ~~~~~~~~~~~l~~~~~~~~~~~ 881 (896)
....+.+|.+.++|.++..+..+
T Consensus 861 ~~~~~~~~~~~v~~~~~~~~~~~ 883 (889)
T KOG4658|consen 861 KEYPDGEWLEGVYWEDELTKLRF 883 (889)
T ss_pred eecCCccceeeEEehhhhhhhhc
Confidence 33445678899999998877765
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=3.4e-64 Score=623.61 Aligned_cols=623 Identities=21% Similarity=0.305 Sum_probs=422.4
Q ss_pred ccchHHHHHHHHHHhcc--CCCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEe---CCc-----------cC
Q 002657 156 VVGLQSQLEQVWRCLVE--EPAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVV---SKD-----------LR 219 (896)
Q Consensus 156 ~vGr~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~---~~~-----------~~ 219 (896)
+|||+..++++..+|.- +++++|+||||||+||||||+++|+.. ...|+..+|+.. +.. +.
T Consensus 186 ~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l---~~~F~g~vfv~~~~v~~~~~~~~~~~~~~~~ 262 (1153)
T PLN03210 186 FVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRL---SRQFQSSVFIDRAFISKSMEIYSSANPDDYN 262 (1153)
T ss_pred ccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHH---hhcCCeEEEeeccccccchhhcccccccccc
Confidence 89999999999998853 578999999999999999999999976 578998887742 111 01
Q ss_pred -HHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHhCCceEEEEEecCCCccccccccccCCCCCCCCcEEEEecCCHHH
Q 002657 220 -LENIQEIIGGKIGLMNESWKSKSLQEKSLDIFKILGEKKFVLLLDDLWQRVDLTKVGVPLPSPQSSASKVVFTTRSEEI 298 (896)
Q Consensus 220 -~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~~~s~iivTtR~~~v 298 (896)
...++++++..+....+ ..... ...+++.++++|+||||||||+...|+.+..... +.+.|++||||||++.+
T Consensus 263 ~~~~l~~~~l~~il~~~~-~~~~~----~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~-~~~~GsrIIiTTrd~~v 336 (1153)
T PLN03210 263 MKLHLQRAFLSEILDKKD-IKIYH----LGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQ-WFGSGSRIIVITKDKHF 336 (1153)
T ss_pred hhHHHHHHHHHHHhCCCC-cccCC----HHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCc-cCCCCcEEEEEeCcHHH
Confidence 12334444444321110 01111 2457788999999999999999988988876555 66789999999999999
Q ss_pred HhhhccCcceeccCCChHhHHHHHHHHhcCcccCCCCChHHHHHHHHHHhCCCchHHHHHHHhhcCCCCHHHHHHHHHHH
Q 002657 299 CGLMEAQKKFKVACLSDKDAWELFCHKVGEETLNNHPDIPELAQTVAKECGGMPLALITIGRAMSCKRTPQEWRHAIQVL 378 (896)
Q Consensus 299 ~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~~~~l~~~~~~~~w~~~l~~l 378 (896)
+..++..++|+++.+++++||+||++.||... ..++++++++++|+++|+|+|||++++|++|++ ++..+|+.+++++
T Consensus 337 l~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~-~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~-k~~~~W~~~l~~L 414 (1153)
T PLN03210 337 LRAHGIDHIYEVCLPSNELALEMFCRSAFKKN-SPPDGFMELASEVALRAGNLPLGLNVLGSYLRG-RDKEDWMDMLPRL 414 (1153)
T ss_pred HHhcCCCeEEEecCCCHHHHHHHHHHHhcCCC-CCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcC-CCHHHHHHHHHHH
Confidence 98777788999999999999999999999765 344568999999999999999999999999997 5789999999998
Q ss_pred hcccCCCCCCccchhhhHHhhhcCCCcchhhHHhhhhccCCCCccccHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHH
Q 002657 379 RTTASEFPGLGNEVYPLLKFSYESLPNDIVRSCLLYCSLYPEDYRISKENLIDCWIGESFLNERVKFEVQNQGYYILGIL 458 (896)
Q Consensus 379 ~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cfl~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~l~~L 458 (896)
+... +.++..+|++||+.|+++..|.||+++|+|+.++.++ .+..|++.+.+.. +..++.|
T Consensus 415 ~~~~------~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~~----------~~~l~~L 475 (1153)
T PLN03210 415 RNGL------DGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVN---DIKLLLANSDLDV----------NIGLKNL 475 (1153)
T ss_pred HhCc------cHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHH---HHHHHHHhcCCCc----------hhChHHH
Confidence 7643 2479999999999998745899999999999987664 4778888765532 2238899
Q ss_pred HHhccccccCCccchhhHHHHhHHHhhhcccc--cCCCeEEEEcC---------CC-------------CccC----CCC
Q 002657 459 VHACLLEEVGEDEVKMHDVIRDMALWIACDSE--KKGKKFLVCAG---------AG-------------LTED----PGV 510 (896)
Q Consensus 459 ~~~~ll~~~~~~~~~mHdlv~d~a~~~~~~~~--~~~~~~~~~~~---------~~-------------~~~~----~~~ 510 (896)
+++||++.. ...+.|||++|++|+++++++. +.++.+++... .+ ..+. ..+
T Consensus 476 ~~ksLi~~~-~~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF 554 (1153)
T PLN03210 476 VDKSLIHVR-EDIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAF 554 (1153)
T ss_pred HhcCCEEEc-CCeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHH
Confidence 999999876 4679999999999999987643 22233443210 00 0000 012
Q ss_pred CCcccceEE-------------------------------EeecccccccccCCCCCCccEEecccccccccchhhhccC
Q 002657 511 RGWENVSRL-------------------------------SLMQNRIKNLSEIPKCPHLLTLFLNSNELKIITNDFFQFM 559 (896)
Q Consensus 511 ~~~~~lr~L-------------------------------~l~~~~~~~l~~~~~~~~L~~L~l~~n~l~~i~~~~~~~l 559 (896)
.++++++.| .+.++.+..+|....+.+|+.|++.+|.+..++.+ +..+
T Consensus 555 ~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~-~~~l 633 (1153)
T PLN03210 555 KGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDG-VHSL 633 (1153)
T ss_pred hcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCccccccccc-cccC
Confidence 233344444 44444444444433455666666666666655554 4556
Q ss_pred CCCcEEEccCCcccccccccccCCCCCCEEeccCC-CccccchhhhcCCCCCEeeccccccccCCcHHHHhccccccEEE
Q 002657 560 PSLKVLSLSRNRRLTNLQLGISKLVSLQHLDLSLT-NIEKLSGELKALVNLKCLNLEYTWSLVTIPQQLIASFLRLHVLR 638 (896)
Q Consensus 560 ~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~Ls~~-~i~~lp~~l~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~ 638 (896)
++|++|+|++|..+..+| .++.+++|++|+|++| .+..+|..++++++|+.|++++|..++.+|.. .++++|+.|+
T Consensus 634 ~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~--i~l~sL~~L~ 710 (1153)
T PLN03210 634 TGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG--INLKSLYRLN 710 (1153)
T ss_pred CCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc--CCCCCCCEEe
Confidence 666666666665556665 4666666777776665 45566666666677777777766666666653 2566666666
Q ss_pred eeccCCCcccccccccccccCccccHHHhcCCCCCcEEEEEecCchhhhhhhcc--------------------------
Q 002657 639 MFGVGDDAFEVASEDSVLFDGGEFLVEELLGLNHLEVLSLTLRSPYALQSFLTS-------------------------- 692 (896)
Q Consensus 639 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-------------------------- 692 (896)
+.+|.... ..+ ....+|+.|+++.+....++.....
T Consensus 711 Lsgc~~L~---------------~~p---~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~ 772 (1153)
T PLN03210 711 LSGCSRLK---------------SFP---DISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPL 772 (1153)
T ss_pred CCCCCCcc---------------ccc---cccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchh
Confidence 66654321 000 0123444555544443333221100
Q ss_pred -ccccccceeeeeeecCCCCeeeeccccccCCcCeEeeccCCCCceEEecCCCccccccCCCccEEEeccCCCCCCCccc
Q 002657 693 -HKLQCCTQALFLQYFKDSTSLVVSSLANLKRLNVLRIADCEKLEELKIDYTGEIQHFGFRSLCKVEIARCQKLKDLTFL 771 (896)
Q Consensus 693 -~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~~l 771 (896)
.....+|+.|.++++.....++ .++.++++|+.|+|++|..++.+|... .+++|+.|+|++|..+..+|..
T Consensus 773 ~~~~~~sL~~L~Ls~n~~l~~lP-~si~~L~~L~~L~Ls~C~~L~~LP~~~-------~L~sL~~L~Ls~c~~L~~~p~~ 844 (1153)
T PLN03210 773 MTMLSPSLTRLFLSDIPSLVELP-SSIQNLHKLEHLEIENCINLETLPTGI-------NLESLESLDLSGCSRLRTFPDI 844 (1153)
T ss_pred hhhccccchheeCCCCCCccccC-hhhhCCCCCCEEECCCCCCcCeeCCCC-------CccccCEEECCCCCcccccccc
Confidence 0012345555555444333322 345556666666666665555543221 2556666666666555555432
Q ss_pred cCCCCCCEEeEecCcccchhcccCcccCCCCCcCccccEeeccCCCcccccCCCCCCCCCccEEeEcCCcCCCCCCCC
Q 002657 772 VFAPNLESIEVKSCLALEEIVSDVPEAMGNLNLFAKLQYLELLGLPNLKSIYWKPLSFPRLKEMTIITCNKLKKLPVD 849 (896)
Q Consensus 772 ~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~i~~C~~L~~lp~~ 849 (896)
.++|+.|+|++ +.++.++ ..+..+++|+.|++.+|++++.++.....+++|+.+++++|++|+.++..
T Consensus 845 --~~nL~~L~Ls~-n~i~~iP-------~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~l~ 912 (1153)
T PLN03210 845 --STNISDLNLSR-TGIEEVP-------WWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEASWN 912 (1153)
T ss_pred --ccccCEeECCC-CCCccCh-------HHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccccCC
Confidence 34566666655 3444443 34567899999999999999999888888999999999999999887754
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=9.9e-45 Score=386.78 Aligned_cols=281 Identities=34% Similarity=0.650 Sum_probs=232.8
Q ss_pred hHHHHHHHHHHhcc--CCCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHhcCCCCc
Q 002657 159 LQSQLEQVWRCLVE--EPAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDLRLENIQEIIGGKIGLMNE 236 (896)
Q Consensus 159 r~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~ 236 (896)
||.++++|.+.|.+ ++.++|+|+||||+||||||++++++. .++.+|+.++|+.++...+...++..|+.+++....
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~-~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~ 79 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDL-RIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDS 79 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHH-HHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-S
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeeccccc-cccccccccccccccccccccccccccccccccccc
Confidence 78999999999988 789999999999999999999999986 468999999999999999999999999999987754
Q ss_pred cc-cccCHHHHHHHHHHHhCCceEEEEEecCCCccccccccccCCCCCCCCcEEEEecCCHHHHhhhcc-CcceeccCCC
Q 002657 237 SW-KSKSLQEKSLDIFKILGEKKFVLLLDDLWQRVDLTKVGVPLPSPQSSASKVVFTTRSEEICGLMEA-QKKFKVACLS 314 (896)
Q Consensus 237 ~~-~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~~~s~iivTtR~~~v~~~~~~-~~~~~l~~L~ 314 (896)
.. ...+..+....+.+.++++++||||||||+...|+.+...++ ....|++||||||+..++..++. ...+++++|+
T Consensus 80 ~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~-~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~ 158 (287)
T PF00931_consen 80 SISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLP-SFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLS 158 (287)
T ss_dssp TSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------H-CHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--
T ss_pred ccccccccccccccchhhhccccceeeeeeecccccccccccccc-cccccccccccccccccccccccccccccccccc
Confidence 33 456778899999999999999999999999999999888777 66779999999999998877665 6789999999
Q ss_pred hHhHHHHHHHHhcCcccCCCCChHHHHHHHHHHhCCCchHHHHHHHhhcCCCCHHHHHHHHHHHhcccCCCCCCccchhh
Q 002657 315 DKDAWELFCHKVGEETLNNHPDIPELAQTVAKECGGMPLALITIGRAMSCKRTPQEWRHAIQVLRTTASEFPGLGNEVYP 394 (896)
Q Consensus 315 ~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~~~~l~~~~~~~~w~~~l~~l~~~~~~~~~~~~~~~~ 394 (896)
.+||++||.+.++.......+..++.+++|+++|+|+||||.++|++|+.+.+..+|+.+++.+.....+..+....+..
T Consensus 159 ~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~ 238 (287)
T PF00931_consen 159 EEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVFS 238 (287)
T ss_dssp HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999987653344566788999999999999999999999976667889999999888776544444568999
Q ss_pred hHHhhhcCCCcchhhHHhhhhccCCCCccccHHHHHHHHHhcCCCCch
Q 002657 395 LLKFSYESLPNDIVRSCLLYCSLYPEDYRISKENLIDCWIGESFLNER 442 (896)
Q Consensus 395 ~l~~sy~~L~~~~~k~cfl~~~~fp~~~~i~~~~li~~w~a~g~i~~~ 442 (896)
++.+||+.||+ ++|.||+|||+||+++.|+++.++++|++||||...
T Consensus 239 ~l~~s~~~L~~-~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 239 ALELSYDSLPD-ELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp HHHHHHHSSHT-CCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred cceechhcCCc-cHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence 99999999999 899999999999999999999999999999999863
No 4
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.87 E-value=9.5e-25 Score=230.55 Aligned_cols=345 Identities=23% Similarity=0.271 Sum_probs=234.5
Q ss_pred eEEEEcCCCCccCCC-CCCcccceEEEeecccccccc-cCCCCCCccEEecccccc--cccchhhhccCCCCcEEEccCC
Q 002657 495 KFLVCAGAGLTEDPG-VRGWENVSRLSLMQNRIKNLS-EIPKCPHLLTLFLNSNEL--KIITNDFFQFMPSLKVLSLSRN 570 (896)
Q Consensus 495 ~~~~~~~~~~~~~~~-~~~~~~lr~L~l~~~~~~~l~-~~~~~~~L~~L~l~~n~l--~~i~~~~~~~l~~L~~L~Ls~~ 570 (896)
.++.....++..+|. ...+.++.||++.+|++..+. .++.++.||++.+..|++ +.||+++| +|..|.+||||+|
T Consensus 35 ~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF-~l~dLt~lDLShN 113 (1255)
T KOG0444|consen 35 TWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIF-RLKDLTILDLSHN 113 (1255)
T ss_pred eEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhc-ccccceeeecchh
Confidence 577777777777773 456779999999999988874 489999999999999966 47899866 5999999999999
Q ss_pred cccccccccccCCCCCCEEeccCCCccccchhh-hcCCCCCEeeccccccccCCcHHHHhccccccEEEeeccCCCcccc
Q 002657 571 RRLTNLQLGISKLVSLQHLDLSLTNIEKLSGEL-KALVNLKCLNLEYTWSLVTIPQQLIASFLRLHVLRMFGVGDDAFEV 649 (896)
Q Consensus 571 ~~i~~lp~~i~~L~~L~~L~Ls~~~i~~lp~~l-~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~ 649 (896)
.+.+.|..+..-+++-+|+||+|+|..+|..+ -+|+.|-+|||++| .+..+|+. +..|.+|++|.+++|...
T Consensus 114 -qL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N-rLe~LPPQ-~RRL~~LqtL~Ls~NPL~---- 186 (1255)
T KOG0444|consen 114 -QLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN-RLEMLPPQ-IRRLSMLQTLKLSNNPLN---- 186 (1255)
T ss_pred -hhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccc-hhhhcCHH-HHHHhhhhhhhcCCChhh----
Confidence 99999999999999999999999999999874 69999999999999 89999997 899999999999988765
Q ss_pred cccccccccCccccHHHhcCCCCCcEEEEEecCchhhhhhhccccccccceeeeeeecCCCCeeeeccccccCCcCeEee
Q 002657 650 ASEDSVLFDGGEFLVEELLGLNHLEVLSLTLRSPYALQSFLTSHKLQCCTQALFLQYFKDSTSLVVSSLANLKRLNVLRI 729 (896)
Q Consensus 650 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~L 729 (896)
...+..|..+++|+.|.+++... .+.++..+..-+.+|+.++++.++ +. ..+..+-++++|+.|+|
T Consensus 187 -----------hfQLrQLPsmtsL~vLhms~TqR-Tl~N~Ptsld~l~NL~dvDlS~N~-Lp-~vPecly~l~~LrrLNL 252 (1255)
T KOG0444|consen 187 -----------HFQLRQLPSMTSLSVLHMSNTQR-TLDNIPTSLDDLHNLRDVDLSENN-LP-IVPECLYKLRNLRRLNL 252 (1255)
T ss_pred -----------HHHHhcCccchhhhhhhcccccc-hhhcCCCchhhhhhhhhccccccC-CC-cchHHHhhhhhhheecc
Confidence 44555666777777888775542 222333333334567777776532 22 23356777889999999
Q ss_pred ccCCCCceEEecCCCccccccCCCccEEEeccCCCCCCCc-cccCCCCCCEEeEecCcccc--hhcccCcc---------
Q 002657 730 ADCEKLEELKIDYTGEIQHFGFRSLCKVEIARCQKLKDLT-FLVFAPNLESIEVKSCLALE--EIVSDVPE--------- 797 (896)
Q Consensus 730 ~~~~~l~~l~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~c~~l~--~i~~~~~~--------- 797 (896)
++|. ++.+.... ....+|++|+++.+ .++.+| .+..++.|+.|.+.++ .++ .|+..+..
T Consensus 253 S~N~-iteL~~~~------~~W~~lEtLNlSrN-QLt~LP~avcKL~kL~kLy~n~N-kL~FeGiPSGIGKL~~Levf~a 323 (1255)
T KOG0444|consen 253 SGNK-ITELNMTE------GEWENLETLNLSRN-QLTVLPDAVCKLTKLTKLYANNN-KLTFEGIPSGIGKLIQLEVFHA 323 (1255)
T ss_pred CcCc-eeeeeccH------HHHhhhhhhccccc-hhccchHHHhhhHHHHHHHhccC-cccccCCccchhhhhhhHHHHh
Confidence 8864 44443221 22567888888877 677776 3667777777777653 222 22110000
Q ss_pred -------cCCCCCcCccccEeeccCCCcccccCCCCCCCCCccEEeEcCCcCCCCCCCCCCCccccceEEEchHhhhhhc
Q 002657 798 -------AMGNLNLFAKLQYLELLGLPNLKSIYWKPLSFPRLKEMTIITCNKLKKLPVDSNSAKECKIVIRGDREWWRQL 870 (896)
Q Consensus 798 -------~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~i~~C~~L~~lp~~~~~~~~~l~~~~~~~~~~~~l 870 (896)
....+..+++|+.|.|+. +.|-.+|....-+|.|+.|++.+.|+|..-| -++.....+..+..+-..-.++
T Consensus 324 anN~LElVPEglcRC~kL~kL~L~~-NrLiTLPeaIHlL~~l~vLDlreNpnLVMPP-KP~da~~~lefYNIDFSLq~Ql 401 (1255)
T KOG0444|consen 324 ANNKLELVPEGLCRCVKLQKLKLDH-NRLITLPEAIHLLPDLKVLDLRENPNLVMPP-KPNDARKKLEFYNIDFSLQHQL 401 (1255)
T ss_pred hccccccCchhhhhhHHHHHhcccc-cceeechhhhhhcCCcceeeccCCcCccCCC-CcchhhhcceeeecceehhhHH
Confidence 002233445555555543 3444555555555566666666555555322 2322234444444444333344
Q ss_pred cc
Q 002657 871 QW 872 (896)
Q Consensus 871 ~~ 872 (896)
..
T Consensus 402 rl 403 (1255)
T KOG0444|consen 402 RL 403 (1255)
T ss_pred hh
Confidence 33
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.87 E-value=7e-22 Score=246.83 Aligned_cols=296 Identities=19% Similarity=0.123 Sum_probs=173.7
Q ss_pred CcccceEEEeecccccccccCCCCCCccEEecccccccccchhhhccCCCCcEEEccCCcccccccccccCCCCCCEEec
Q 002657 512 GWENVSRLSLMQNRIKNLSEIPKCPHLLTLFLNSNELKIITNDFFQFMPSLKVLSLSRNRRLTNLQLGISKLVSLQHLDL 591 (896)
Q Consensus 512 ~~~~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~L 591 (896)
.++++++|++++|.+........+++|++|++++|.+....+..++++++|++|+|++|.....+|..++++++|++|+|
T Consensus 116 ~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 195 (968)
T PLN00113 116 TSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTL 195 (968)
T ss_pred cCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeec
Confidence 45577777777776654333455677777777777666444444677777777777777333466777777777777777
Q ss_pred cCCCcc-ccchhhhcCCCCCEeeccccccccCCcHHHHhccccccEEEeeccCCCcccccccccccccCccccHHHhcCC
Q 002657 592 SLTNIE-KLSGELKALVNLKCLNLEYTWSLVTIPQQLIASFLRLHVLRMFGVGDDAFEVASEDSVLFDGGEFLVEELLGL 670 (896)
Q Consensus 592 s~~~i~-~lp~~l~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 670 (896)
++|.+. .+|..++++++|++|++++|.....+|.. ++++++|++|++.+|... +..+..+..+
T Consensus 196 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~---------------~~~p~~l~~l 259 (968)
T PLN00113 196 ASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYE-IGGLTSLNHLDLVYNNLT---------------GPIPSSLGNL 259 (968)
T ss_pred cCCCCcCcCChHHcCcCCccEEECcCCccCCcCChh-HhcCCCCCEEECcCceec---------------cccChhHhCC
Confidence 777665 56777777777777777777444456654 677777777777766544 3445567777
Q ss_pred CCCcEEEEEecCchh-hhhhhccccccccceeeeeeecCCCCeeeeccccccCCcCeEeeccCCCCceEEecCCCccccc
Q 002657 671 NHLEVLSLTLRSPYA-LQSFLTSHKLQCCTQALFLQYFKDSTSLVVSSLANLKRLNVLRIADCEKLEELKIDYTGEIQHF 749 (896)
Q Consensus 671 ~~L~~L~l~~~~~~~-~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~ 749 (896)
++|+.|+++.+.... ++..+ ....+|+.|+++++..... .+..+.++++|+.|++++|.....++..+ .
T Consensus 260 ~~L~~L~L~~n~l~~~~p~~l---~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~l~~n~~~~~~~~~~------~ 329 (968)
T PLN00113 260 KNLQYLFLYQNKLSGPIPPSI---FSLQKLISLDLSDNSLSGE-IPELVIQLQNLEILHLFSNNFTGKIPVAL------T 329 (968)
T ss_pred CCCCEEECcCCeeeccCchhH---hhccCcCEEECcCCeeccC-CChhHcCCCCCcEEECCCCccCCcCChhH------h
Confidence 777777777665421 11111 1134666777765543222 22445667777777777765443332222 2
Q ss_pred cCCCccEEEeccCCCCCCCc-cccCCCCCCEEeEecCcccchhcccCcccCCCCCcCccccEeeccCCCcccccCCCCCC
Q 002657 750 GFRSLCKVEIARCQKLKDLT-FLVFAPNLESIEVKSCLALEEIVSDVPEAMGNLNLFAKLQYLELLGLPNLKSIYWKPLS 828 (896)
Q Consensus 750 ~~~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~ 828 (896)
.+++|+.|++++|.....+| .++.+++|+.|++++|.....++ ..+..+++|+.|++.+++-...++.....
T Consensus 330 ~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p-------~~~~~~~~L~~L~l~~n~l~~~~p~~~~~ 402 (968)
T PLN00113 330 SLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIP-------EGLCSSGNLFKLILFSNSLEGEIPKSLGA 402 (968)
T ss_pred cCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCC-------hhHhCcCCCCEEECcCCEecccCCHHHhC
Confidence 46777777777774433444 36667777777777754332222 12223344444444443322233333334
Q ss_pred CCCccEEeEcCC
Q 002657 829 FPRLKEMTIITC 840 (896)
Q Consensus 829 ~~~L~~L~i~~C 840 (896)
+++|+.|++.+|
T Consensus 403 ~~~L~~L~L~~n 414 (968)
T PLN00113 403 CRSLRRVRLQDN 414 (968)
T ss_pred CCCCCEEECcCC
Confidence 444444444444
No 6
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.87 E-value=1.5e-21 Score=243.99 Aligned_cols=321 Identities=18% Similarity=0.167 Sum_probs=183.6
Q ss_pred CcccceEEEeecccccc-ccc-CCCCCCccEEecccccccccchhhhccCCCCcEEEccCCcccccccccccCCCCCCEE
Q 002657 512 GWENVSRLSLMQNRIKN-LSE-IPKCPHLLTLFLNSNELKIITNDFFQFMPSLKVLSLSRNRRLTNLQLGISKLVSLQHL 589 (896)
Q Consensus 512 ~~~~lr~L~l~~~~~~~-l~~-~~~~~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L 589 (896)
.++++++|++++|.+.. +|. +..+++|++|++++|.+....+..++++++|++|+|++|.....+|..++++++|++|
T Consensus 138 ~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 217 (968)
T PLN00113 138 SIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWI 217 (968)
T ss_pred ccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEE
Confidence 45677777777777653 332 6677777777777776654444446777777777777773334567777777777777
Q ss_pred eccCCCcc-ccchhhhcCCCCCEeeccccccccCCcHHHHhccccccEEEeeccCCCcccccc-cc-------ccc-ccC
Q 002657 590 DLSLTNIE-KLSGELKALVNLKCLNLEYTWSLVTIPQQLIASFLRLHVLRMFGVGDDAFEVAS-ED-------SVL-FDG 659 (896)
Q Consensus 590 ~Ls~~~i~-~lp~~l~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~-~~-------~~~-~~~ 659 (896)
+|++|.+. .+|..++++++|++|++++|.....+|.. ++++++|++|++.+|......... .. ... ..-
T Consensus 218 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l 296 (968)
T PLN00113 218 YLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSS-LGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSL 296 (968)
T ss_pred ECcCCccCCcCChhHhcCCCCCEEECcCceeccccChh-HhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCee
Confidence 77777766 56777777777777777777433455654 677777777777766543100000 00 000 000
Q ss_pred ccccHHHhcCCCCCcEEEEEecCchh-hhhhhccccccccceeeeeeecCCCCeeeeccccccCCcCeEeeccCCCCceE
Q 002657 660 GEFLVEELLGLNHLEVLSLTLRSPYA-LQSFLTSHKLQCCTQALFLQYFKDSTSLVVSSLANLKRLNVLRIADCEKLEEL 738 (896)
Q Consensus 660 ~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~l 738 (896)
....+..+..+++|+.|+++.+.... .+..+ ...++|+.|.+..+...... +..+..+++|+.|++++|.....+
T Consensus 297 ~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~---~~l~~L~~L~L~~n~l~~~~-p~~l~~~~~L~~L~Ls~n~l~~~~ 372 (968)
T PLN00113 297 SGEIPELVIQLQNLEILHLFSNNFTGKIPVAL---TSLPRLQVLQLWSNKFSGEI-PKNLGKHNNLTVLDLSTNNLTGEI 372 (968)
T ss_pred ccCCChhHcCCCCCcEEECCCCccCCcCChhH---hcCCCCCEEECcCCCCcCcC-ChHHhCCCCCcEEECCCCeeEeeC
Confidence 01223334444444444444433221 11111 11234455555444322111 233445556666666555332222
Q ss_pred EecCCCccccccCCCccEEEeccCCCCCCCc-cccCCCCCCEEeEecCcccchhcccCcccCCCCCcCccccEeeccCCC
Q 002657 739 KIDYTGEIQHFGFRSLCKVEIARCQKLKDLT-FLVFAPNLESIEVKSCLALEEIVSDVPEAMGNLNLFAKLQYLELLGLP 817 (896)
Q Consensus 739 ~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~ 817 (896)
+.+. ..+++|+.|++++|.....+| .++.+++|+.|++++|.....++ ..+..+++|+.|+++++.
T Consensus 373 -p~~~-----~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p-------~~~~~l~~L~~L~Ls~N~ 439 (968)
T PLN00113 373 -PEGL-----CSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELP-------SEFTKLPLVYFLDISNNN 439 (968)
T ss_pred -ChhH-----hCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECC-------hhHhcCCCCCEEECcCCc
Confidence 1111 135667777777664333344 36677888888888764433332 345667889999998876
Q ss_pred cccccCCCCCCCCCccEEeEcCCcCCCCCCCCC
Q 002657 818 NLKSIYWKPLSFPRLKEMTIITCNKLKKLPVDS 850 (896)
Q Consensus 818 ~l~~i~~~~~~~~~L~~L~i~~C~~L~~lp~~~ 850 (896)
-...++.....+++|+.|++++|.-...+|...
T Consensus 440 l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~ 472 (968)
T PLN00113 440 LQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF 472 (968)
T ss_pred ccCccChhhccCCCCcEEECcCceeeeecCccc
Confidence 544555555678999999999987776777543
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.86 E-value=9.9e-23 Score=214.41 Aligned_cols=298 Identities=19% Similarity=0.245 Sum_probs=160.5
Q ss_pred CcccceEEEeecccccccccCCCCC-CccEEecccccccccchhhhccCCCCcEEEccCCcccccccc-cccCCCCCCEE
Q 002657 512 GWENVSRLSLMQNRIKNLSEIPKCP-HLLTLFLNSNELKIITNDFFQFMPSLKVLSLSRNRRLTNLQL-GISKLVSLQHL 589 (896)
Q Consensus 512 ~~~~lr~L~l~~~~~~~l~~~~~~~-~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~Ls~~~~i~~lp~-~i~~L~~L~~L 589 (896)
.+++++.+++..|.+..+|.++... +|+.|+|.+|.|+.+....++.++.||+||||.| .|.++|. +|..=.++++|
T Consensus 100 nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN-~is~i~~~sfp~~~ni~~L 178 (873)
T KOG4194|consen 100 NLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRN-LISEIPKPSFPAKVNIKKL 178 (873)
T ss_pred cCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhc-hhhcccCCCCCCCCCceEE
Confidence 3456666666666666666655443 3777777777666666666666777777777777 6666653 34555667777
Q ss_pred eccCCCccccch-hhhcCCCCCEeeccccccccCCcHHHHhccccccEEEeeccCCCcccccccccccccCccccHHHhc
Q 002657 590 DLSLTNIEKLSG-ELKALVNLKCLNLEYTWSLVTIPQQLIASFLRLHVLRMFGVGDDAFEVASEDSVLFDGGEFLVEELL 668 (896)
Q Consensus 590 ~Ls~~~i~~lp~-~l~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 668 (896)
+|++|.|+.+-. .|.+|.+|-+|.|+.| +++.+|..++++|++|+.|++..|.+.- .....+.
T Consensus 179 ~La~N~It~l~~~~F~~lnsL~tlkLsrN-rittLp~r~Fk~L~~L~~LdLnrN~iri---------------ve~ltFq 242 (873)
T KOG4194|consen 179 NLASNRITTLETGHFDSLNSLLTLKLSRN-RITTLPQRSFKRLPKLESLDLNRNRIRI---------------VEGLTFQ 242 (873)
T ss_pred eeccccccccccccccccchheeeecccC-cccccCHHHhhhcchhhhhhccccceee---------------ehhhhhc
Confidence 777777776632 3666667777777777 6677776666777777777776654431 1122244
Q ss_pred CCCCCcEEEEEecCchhhhhhhccccccccceeeeeeecCCCCeeeeccccccCCcCeEeeccCCCCceEEe-cCCCccc
Q 002657 669 GLNHLEVLSLTLRSPYALQSFLTSHKLQCCTQALFLQYFKDSTSLVVSSLANLKRLNVLRIADCEKLEELKI-DYTGEIQ 747 (896)
Q Consensus 669 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~l~~-~~~~~~~ 747 (896)
.|++|+.|.+..|++..+...... .+..+++|+|..+. ...+.-.++-+++.|+.|++++|. +..+.+ .|.
T Consensus 243 gL~Sl~nlklqrN~I~kL~DG~Fy--~l~kme~l~L~~N~-l~~vn~g~lfgLt~L~~L~lS~Na-I~rih~d~Ws---- 314 (873)
T KOG4194|consen 243 GLPSLQNLKLQRNDISKLDDGAFY--GLEKMEHLNLETNR-LQAVNEGWLFGLTSLEQLDLSYNA-IQRIHIDSWS---- 314 (873)
T ss_pred CchhhhhhhhhhcCcccccCccee--eecccceeecccch-hhhhhcccccccchhhhhccchhh-hheeecchhh----
Confidence 555555555555554444332111 12345555554432 222222445555566666665542 333322 231
Q ss_pred cccCCCccEEEeccCCCCCCCcc--ccCCCCCCEEeEecCcccchhcc---------------------cCcccCCCCCc
Q 002657 748 HFGFRSLCKVEIARCQKLKDLTF--LVFAPNLESIEVKSCLALEEIVS---------------------DVPEAMGNLNL 804 (896)
Q Consensus 748 ~~~~~~L~~L~L~~c~~l~~l~~--l~~l~~L~~L~L~~c~~l~~i~~---------------------~~~~~~~~~~~ 804 (896)
.+++|+.|+|+.+ .++.++. +..+..|++|+|+. +.++.+.. .+++....+.+
T Consensus 315 --ftqkL~~LdLs~N-~i~~l~~~sf~~L~~Le~LnLs~-Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~g 390 (873)
T KOG4194|consen 315 --FTQKLKELDLSSN-RITRLDEGSFRVLSQLEELNLSH-NSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNG 390 (873)
T ss_pred --hcccceeEecccc-ccccCChhHHHHHHHhhhhcccc-cchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhcc
Confidence 3555556665554 4444432 33444444444444 33333321 00111133444
Q ss_pred CccccEeeccCCCcccccCCC-CCCCCCccEEeEcC
Q 002657 805 FAKLQYLELLGLPNLKSIYWK-PLSFPRLKEMTIIT 839 (896)
Q Consensus 805 ~~~L~~L~l~~~~~l~~i~~~-~~~~~~L~~L~i~~ 839 (896)
+|+|+.|.+.+ ++++.++.. ...++.|+.|++.+
T Consensus 391 l~~LrkL~l~g-Nqlk~I~krAfsgl~~LE~LdL~~ 425 (873)
T KOG4194|consen 391 LPSLRKLRLTG-NQLKSIPKRAFSGLEALEHLDLGD 425 (873)
T ss_pred chhhhheeecC-ceeeecchhhhccCcccceecCCC
Confidence 56666666665 455555542 33456666666654
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.82 E-value=1.6e-21 Score=205.47 Aligned_cols=291 Identities=23% Similarity=0.277 Sum_probs=196.0
Q ss_pred cccceEEEeecccccccc--cCCCCCCccEEecccccccccchhhhccCCCCcEEEccCCcccccccc-cccCCCCCCEE
Q 002657 513 WENVSRLSLMQNRIKNLS--EIPKCPHLLTLFLNSNELKIITNDFFQFMPSLKVLSLSRNRRLTNLQL-GISKLVSLQHL 589 (896)
Q Consensus 513 ~~~lr~L~l~~~~~~~l~--~~~~~~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~Ls~~~~i~~lp~-~i~~L~~L~~L 589 (896)
++.+|.|+++.|.+..++ .++.-.+++.|+|++|.|+.+..+.|.++.+|.+|.|++| .++.+|. .|++|++|+.|
T Consensus 148 l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrN-rittLp~r~Fk~L~~L~~L 226 (873)
T KOG4194|consen 148 LPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRN-RITTLPQRSFKRLPKLESL 226 (873)
T ss_pred HhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccC-cccccCHHHhhhcchhhhh
Confidence 445666666666666553 3555566777777777777666666777777777777777 6666654 45557777777
Q ss_pred eccCCCcccc-chhhhcCCCCCEeeccccccccCCcHHHHhccccccEEEeeccCCCcccccccccccccCccccHHHhc
Q 002657 590 DLSLTNIEKL-SGELKALVNLKCLNLEYTWSLVTIPQQLIASFLRLHVLRMFGVGDDAFEVASEDSVLFDGGEFLVEELL 668 (896)
Q Consensus 590 ~Ls~~~i~~l-p~~l~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 668 (896)
+|..|.|+.. ...|.+|++|+.|.|..| .+..+.++++..|.++++|++..|.... ..-..+-
T Consensus 227 dLnrN~irive~ltFqgL~Sl~nlklqrN-~I~kL~DG~Fy~l~kme~l~L~~N~l~~---------------vn~g~lf 290 (873)
T KOG4194|consen 227 DLNRNRIRIVEGLTFQGLPSLQNLKLQRN-DISKLDDGAFYGLEKMEHLNLETNRLQA---------------VNEGWLF 290 (873)
T ss_pred hccccceeeehhhhhcCchhhhhhhhhhc-CcccccCcceeeecccceeecccchhhh---------------hhccccc
Confidence 7777766654 345667777777777777 5667777777777777777777665542 2223366
Q ss_pred CCCCCcEEEEEecCchhhhhhhccccccccceeeeeeecCCCCeeeeccccccCCcCeEeeccCCCCceEEecCCCcccc
Q 002657 669 GLNHLEVLSLTLRSPYALQSFLTSHKLQCCTQALFLQYFKDSTSLVVSSLANLKRLNVLRIADCEKLEELKIDYTGEIQH 748 (896)
Q Consensus 669 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~ 748 (896)
+|+.|+.|+++.|.+..+. .+...+...|+.|+|+++. .+.++..++..+..|+.|+|+.| .+..+.. ..+
T Consensus 291 gLt~L~~L~lS~NaI~rih--~d~WsftqkL~~LdLs~N~-i~~l~~~sf~~L~~Le~LnLs~N-si~~l~e-----~af 361 (873)
T KOG4194|consen 291 GLTSLEQLDLSYNAIQRIH--IDSWSFTQKLKELDLSSNR-ITRLDEGSFRVLSQLEELNLSHN-SIDHLAE-----GAF 361 (873)
T ss_pred ccchhhhhccchhhhheee--cchhhhcccceeEeccccc-cccCChhHHHHHHHhhhhccccc-chHHHHh-----hHH
Confidence 7888888999888765543 2334456688888888754 45566677888889999999886 3443322 223
Q ss_pred ccCCCccEEEeccCCC---CCCC-ccccCCCCCCEEeEecCcccchhcccCcccCCCCCcCccccEeeccCCCcccccCC
Q 002657 749 FGFRSLCKVEIARCQK---LKDL-TFLVFAPNLESIEVKSCLALEEIVSDVPEAMGNLNLFAKLQYLELLGLPNLKSIYW 824 (896)
Q Consensus 749 ~~~~~L~~L~L~~c~~---l~~l-~~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~ 824 (896)
.++++|++|+|+.+.. +++- ..+..+++|+.|.+.| ++++.|+. ..+.+|++|+.|+|.+++ +.++-.
T Consensus 362 ~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~g-Nqlk~I~k------rAfsgl~~LE~LdL~~Na-iaSIq~ 433 (873)
T KOG4194|consen 362 VGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTG-NQLKSIPK------RAFSGLEALEHLDLGDNA-IASIQP 433 (873)
T ss_pred HHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecC-ceeeecch------hhhccCcccceecCCCCc-ceeecc
Confidence 4688999999987631 2221 1356799999999999 78999876 678899999999999854 555543
Q ss_pred CC-CCCCCccEEeEc
Q 002657 825 KP-LSFPRLKEMTII 838 (896)
Q Consensus 825 ~~-~~~~~L~~L~i~ 838 (896)
.. ..+ .|++|.+.
T Consensus 434 nAFe~m-~Lk~Lv~n 447 (873)
T KOG4194|consen 434 NAFEPM-ELKELVMN 447 (873)
T ss_pred cccccc-hhhhhhhc
Confidence 32 223 56666543
No 9
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.82 E-value=1.9e-19 Score=224.74 Aligned_cols=322 Identities=20% Similarity=0.244 Sum_probs=236.7
Q ss_pred eEEEEcCCCCccCCCCCCcccceEEEeeccccccccc-CCCCCCccEEecccc-cccccchhhhccCCCCcEEEccCCcc
Q 002657 495 KFLVCAGAGLTEDPGVRGWENVSRLSLMQNRIKNLSE-IPKCPHLLTLFLNSN-ELKIITNDFFQFMPSLKVLSLSRNRR 572 (896)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~-~~~~~~L~~L~l~~n-~l~~i~~~~~~~l~~L~~L~Ls~~~~ 572 (896)
.++...+..+..+|....+.+++.|++.++.+..++. +..+++|+.|+|++| .+..+|. ++.+++|+.|+|++|..
T Consensus 592 r~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~ 669 (1153)
T PLN03210 592 RLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSS 669 (1153)
T ss_pred EEEEecCCCCCCCCCcCCccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCC
Confidence 3444455556666665567899999999999988754 678999999999987 5677775 78899999999999988
Q ss_pred cccccccccCCCCCCEEeccCC-CccccchhhhcCCCCCEeeccccccccCCcHHHHhccccccEEEeeccCCCcccccc
Q 002657 573 LTNLQLGISKLVSLQHLDLSLT-NIEKLSGELKALVNLKCLNLEYTWSLVTIPQQLIASFLRLHVLRMFGVGDDAFEVAS 651 (896)
Q Consensus 573 i~~lp~~i~~L~~L~~L~Ls~~-~i~~lp~~l~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~ 651 (896)
+..+|.+++++++|++|++++| .++.+|..+ ++++|++|++++|..+..+|. ..++|+.|++.++....+....
T Consensus 670 L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~----~~~nL~~L~L~~n~i~~lP~~~ 744 (1153)
T PLN03210 670 LVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPD----ISTNISWLDLDETAIEEFPSNL 744 (1153)
T ss_pred ccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCcccccc----ccCCcCeeecCCCccccccccc
Confidence 9999999999999999999997 788999776 899999999999987877775 2467888888877654321100
Q ss_pred ccc------ccc-------cC-ccccHHHhcCCCCCcEEEEEecCc-hhhhhhhccccccccceeeeeeecCCCCeeeec
Q 002657 652 EDS------VLF-------DG-GEFLVEELLGLNHLEVLSLTLRSP-YALQSFLTSHKLQCCTQALFLQYFKDSTSLVVS 716 (896)
Q Consensus 652 ~~~------~~~-------~~-~~~~~~~l~~l~~L~~L~l~~~~~-~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~ 716 (896)
... ... +. ...........++|+.|+++.+.. ..++.. ...+++|+.|.+.+|.....++.
T Consensus 745 ~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~s---i~~L~~L~~L~Ls~C~~L~~LP~- 820 (1153)
T PLN03210 745 RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSS---IQNLHKLEHLEIENCINLETLPT- 820 (1153)
T ss_pred cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChh---hhCCCCCCEEECCCCCCcCeeCC-
Confidence 000 000 00 000001112235788888876642 223322 22356899999999887776542
Q ss_pred cccccCCcCeEeeccCCCCceEEecCCCccccccCCCccEEEeccCCCCCCCc-cccCCCCCCEEeEecCcccchhcccC
Q 002657 717 SLANLKRLNVLRIADCEKLEELKIDYTGEIQHFGFRSLCKVEIARCQKLKDLT-FLVFAPNLESIEVKSCLALEEIVSDV 795 (896)
Q Consensus 717 ~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~c~~l~~i~~~~ 795 (896)
. .++++|+.|++++|..+..++ . ...+|+.|+|+++ .++.+| ++..+++|+.|+|++|+.++.++
T Consensus 821 ~-~~L~sL~~L~Ls~c~~L~~~p-~--------~~~nL~~L~Ls~n-~i~~iP~si~~l~~L~~L~L~~C~~L~~l~--- 886 (1153)
T PLN03210 821 G-INLESLESLDLSGCSRLRTFP-D--------ISTNISDLNLSRT-GIEEVPWWIEKFSNLSFLDMNGCNNLQRVS--- 886 (1153)
T ss_pred C-CCccccCEEECCCCCcccccc-c--------cccccCEeECCCC-CCccChHHHhcCCCCCEEECCCCCCcCccC---
Confidence 2 268999999999998887542 1 2568999999998 778877 58899999999999999999985
Q ss_pred cccCCCCCcCccccEeeccCCCcccccCCCC-------------CCCCCccEEeEcCCcCCCC
Q 002657 796 PEAMGNLNLFAKLQYLELLGLPNLKSIYWKP-------------LSFPRLKEMTIITCNKLKK 845 (896)
Q Consensus 796 ~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~-------------~~~~~L~~L~i~~C~~L~~ 845 (896)
.....+++|+.|++++|++|..++... ..+|+...+.+.+|.+|..
T Consensus 887 ----~~~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~nC~~L~~ 945 (1153)
T PLN03210 887 ----LNISKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKLPSTVCINFINCFNLDQ 945 (1153)
T ss_pred ----cccccccCCCeeecCCCcccccccCCCCchhhhhhcccccccCCchhccccccccCCCc
Confidence 345678999999999999998765421 2355556677888888764
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.82 E-value=8.2e-23 Score=216.03 Aligned_cols=320 Identities=19% Similarity=0.245 Sum_probs=248.1
Q ss_pred CCCcccceEEEeeccccccccc-CCCCCCccEEecccccccccchhhhccCCCCcEEEccCCccccc--ccccccCCCCC
Q 002657 510 VRGWENVSRLSLMQNRIKNLSE-IPKCPHLLTLFLNSNELKIITNDFFQFMPSLKVLSLSRNRRLTN--LQLGISKLVSL 586 (896)
Q Consensus 510 ~~~~~~lr~L~l~~~~~~~l~~-~~~~~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~Ls~~~~i~~--lp~~i~~L~~L 586 (896)
...++.++.|.+....+..+|. ++.|.+|+.|.+++|++..+... ++.++.||.+++..| ++.. +|..|..|..|
T Consensus 28 v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGE-Ls~Lp~LRsv~~R~N-~LKnsGiP~diF~l~dL 105 (1255)
T KOG0444|consen 28 VEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGE-LSDLPRLRSVIVRDN-NLKNSGIPTDIFRLKDL 105 (1255)
T ss_pred HHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhh-hccchhhHHHhhhcc-ccccCCCCchhcccccc
Confidence 3456788899998888888876 88999999999999999888776 889999999999999 7764 79999999999
Q ss_pred CEEeccCCCccccchhhhcCCCCCEeeccccccccCCcHHHHhccccccEEEeeccCCCcccccccccccccCccccHHH
Q 002657 587 QHLDLSLTNIEKLSGELKALVNLKCLNLEYTWSLVTIPQQLIASFLRLHVLRMFGVGDDAFEVASEDSVLFDGGEFLVEE 666 (896)
Q Consensus 587 ~~L~Ls~~~i~~lp~~l~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 666 (896)
..||||+|++++.|..+.+-+++-.|+|++| .+..||..++.+|+.|-.|++++|.. ...+..
T Consensus 106 t~lDLShNqL~EvP~~LE~AKn~iVLNLS~N-~IetIPn~lfinLtDLLfLDLS~NrL----------------e~LPPQ 168 (1255)
T KOG0444|consen 106 TILDLSHNQLREVPTNLEYAKNSIVLNLSYN-NIETIPNSLFINLTDLLFLDLSNNRL----------------EMLPPQ 168 (1255)
T ss_pred eeeecchhhhhhcchhhhhhcCcEEEEcccC-ccccCCchHHHhhHhHhhhccccchh----------------hhcCHH
Confidence 9999999999999999999999999999999 89999999999999999999998765 356777
Q ss_pred hcCCCCCcEEEEEecCchhhhhhhccccccccceeeeeeecCCCCeeeeccccccCCcCeEeeccCCCCceEEecCCCcc
Q 002657 667 LLGLNHLEVLSLTLRSPYALQSFLTSHKLQCCTQALFLQYFKDSTSLVVSSLANLKRLNVLRIADCEKLEELKIDYTGEI 746 (896)
Q Consensus 667 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~ 746 (896)
+..|.+|++|.+++|....++ +.....+++|..|.+++.+......+.++..+.+|..++++.| .+..+|....
T Consensus 169 ~RRL~~LqtL~Ls~NPL~hfQ--LrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N-~Lp~vPecly--- 242 (1255)
T KOG0444|consen 169 IRRLSMLQTLKLSNNPLNHFQ--LRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSEN-NLPIVPECLY--- 242 (1255)
T ss_pred HHHHhhhhhhhcCCChhhHHH--HhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhcccccc-CCCcchHHHh---
Confidence 889999999999988765433 1222235567777777665544444567888999999999965 5655544443
Q ss_pred ccccCCCccEEEeccCCCCCCCc-cccCCCCCCEEeEecCcccchhccc------------------CcccCCCCCcCcc
Q 002657 747 QHFGFRSLCKVEIARCQKLKDLT-FLVFAPNLESIEVKSCLALEEIVSD------------------VPEAMGNLNLFAK 807 (896)
Q Consensus 747 ~~~~~~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~c~~l~~i~~~------------------~~~~~~~~~~~~~ 807 (896)
.+++|+.|+|+++ .++.+. ..+.-.+|++|+++. +.++.++.. +.+....++.+.+
T Consensus 243 ---~l~~LrrLNLS~N-~iteL~~~~~~W~~lEtLNlSr-NQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~ 317 (1255)
T KOG0444|consen 243 ---KLRNLRRLNLSGN-KITELNMTEGEWENLETLNLSR-NQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQ 317 (1255)
T ss_pred ---hhhhhheeccCcC-ceeeeeccHHHHhhhhhhcccc-chhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhh
Confidence 4899999999998 788776 355668999999999 677777541 1111233444555
Q ss_pred ccEeeccCCCcccccCCCCCCCCCccEEeEcCCcCCCCCCCCCCCccccceEEEc
Q 002657 808 LQYLELLGLPNLKSIYWKPLSFPRLKEMTIITCNKLKKLPVDSNSAKECKIVIRG 862 (896)
Q Consensus 808 L~~L~l~~~~~l~~i~~~~~~~~~L~~L~i~~C~~L~~lp~~~~~~~~~l~~~~~ 862 (896)
|+.+...+ ++|+-+|.+...|+.|+.|.+ +|+.|..||.++.- ++.+++.+.
T Consensus 318 Levf~aan-N~LElVPEglcRC~kL~kL~L-~~NrLiTLPeaIHl-L~~l~vLDl 369 (1255)
T KOG0444|consen 318 LEVFHAAN-NKLELVPEGLCRCVKLQKLKL-DHNRLITLPEAIHL-LPDLKVLDL 369 (1255)
T ss_pred hHHHHhhc-cccccCchhhhhhHHHHHhcc-cccceeechhhhhh-cCCcceeec
Confidence 55555555 456666666677888888887 66788888877643 556666553
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.74 E-value=5.3e-20 Score=185.91 Aligned_cols=312 Identities=21% Similarity=0.269 Sum_probs=194.8
Q ss_pred CCCCcccceEEEeecccccccccCCCCCCccEEecccccccccchhhhccCCCCcEEEccCCcccccccccccCCCCCCE
Q 002657 509 GVRGWENVSRLSLMQNRIKNLSEIPKCPHLLTLFLNSNELKIITNDFFQFMPSLKVLSLSRNRRLTNLQLGISKLVSLQH 588 (896)
Q Consensus 509 ~~~~~~~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~ 588 (896)
...++.++..|.+..|.+..+|.|+.|..|..|++..|.++-+|....+++.+|.+|||+.| .++++|..++.|++|++
T Consensus 201 ~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdN-klke~Pde~clLrsL~r 279 (565)
T KOG0472|consen 201 ELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDN-KLKEVPDEICLLRSLER 279 (565)
T ss_pred hhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeecccc-ccccCchHHHHhhhhhh
Confidence 45677888999999999999999999999999999999999999988889999999999999 99999999999999999
Q ss_pred EeccCCCccccchhhhcCCCCCEeeccccccccCCcHHHHhccc--cccEEEe--eccCCCcccccccccccccCccccH
Q 002657 589 LDLSLTNIEKLSGELKALVNLKCLNLEYTWSLVTIPQQLIASFL--RLHVLRM--FGVGDDAFEVASEDSVLFDGGEFLV 664 (896)
Q Consensus 589 L~Ls~~~i~~lp~~l~~L~~L~~L~L~~~~~l~~lp~~~i~~l~--~L~~L~l--~~~~~~~~~~~~~~~~~~~~~~~~~ 664 (896)
||+|+|.|+.+|.++++| .|+.|-+.|| -+..+-.+++.+-+ -|++|.- ..-+....+-..... ........
T Consensus 280 LDlSNN~is~Lp~sLgnl-hL~~L~leGN-PlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~--~t~~~~~~ 355 (565)
T KOG0472|consen 280 LDLSNNDISSLPYSLGNL-HLKFLALEGN-PLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETA--MTLPSESF 355 (565)
T ss_pred hcccCCccccCCcccccc-eeeehhhcCC-chHHHHHHHHcccHHHHHHHHHHhhccCCCCCCccccccc--CCCCCCcc
Confidence 999999999999999999 9999999999 45555444332211 1222211 100111100000000 00001112
Q ss_pred HHhcCCCCCcEEEEEecCchhhhhhhccccccccceeeeeeec----------------------CCCCeeeeccccccC
Q 002657 665 EELLGLNHLEVLSLTLRSPYALQSFLTSHKLQCCTQALFLQYF----------------------KDSTSLVVSSLANLK 722 (896)
Q Consensus 665 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~----------------------~~~~~~~~~~l~~l~ 722 (896)
.....+.+.+.|+++....+.++.-........-.....++.+ .+..++++..++.++
T Consensus 356 ~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~ 435 (565)
T KOG0472|consen 356 PDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQ 435 (565)
T ss_pred cchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhh
Confidence 2222334445555554443333221111100011111222111 111222223455566
Q ss_pred CcCeEeeccCCCCceEEecCCCccccccCCCccEEEeccCCCCCCCccccC-CCCCCEEeEecCcccchhcccCcccCCC
Q 002657 723 RLNVLRIADCEKLEELKIDYTGEIQHFGFRSLCKVEIARCQKLKDLTFLVF-APNLESIEVKSCLALEEIVSDVPEAMGN 801 (896)
Q Consensus 723 ~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~~l~~-l~~L~~L~L~~c~~l~~i~~~~~~~~~~ 801 (896)
+|..|++++| .+.++|.++. .+..|+.|+|+.+ ....+|.... +..|+.+-.++ +.+..+.+ ..
T Consensus 436 kLt~L~L~NN-~Ln~LP~e~~------~lv~Lq~LnlS~N-rFr~lP~~~y~lq~lEtllas~-nqi~~vd~------~~ 500 (565)
T KOG0472|consen 436 KLTFLDLSNN-LLNDLPEEMG------SLVRLQTLNLSFN-RFRMLPECLYELQTLETLLASN-NQIGSVDP------SG 500 (565)
T ss_pred cceeeecccc-hhhhcchhhh------hhhhhheeccccc-ccccchHHHhhHHHHHHHHhcc-ccccccCh------HH
Confidence 6666666654 4444554443 2555666666665 4444443322 22333333333 45555533 34
Q ss_pred CCcCccccEeeccCCCcccccCCCCCCCCCccEEeEcCCc
Q 002657 802 LNLFAKLQYLELLGLPNLKSIYWKPLSFPRLKEMTIITCN 841 (896)
Q Consensus 802 ~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~i~~C~ 841 (896)
+..+.+|.+|++.+ +.++.+|...+.|.+|++|.+.+.|
T Consensus 501 l~nm~nL~tLDL~n-Ndlq~IPp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 501 LKNMRNLTTLDLQN-NDLQQIPPILGNMTNLRHLELDGNP 539 (565)
T ss_pred hhhhhhcceeccCC-CchhhCChhhccccceeEEEecCCc
Confidence 67788999999988 6789999999999999999999864
No 12
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.62 E-value=2.7e-15 Score=173.52 Aligned_cols=255 Identities=22% Similarity=0.205 Sum_probs=178.1
Q ss_pred CCeEEEEcCCCCccCCCCCCcccceEEEeecccccccccCCCCCCccEEecccccccccchhhhccCCCCcEEEccCCcc
Q 002657 493 GKKFLVCAGAGLTEDPGVRGWENVSRLSLMQNRIKNLSEIPKCPHLLTLFLNSNELKIITNDFFQFMPSLKVLSLSRNRR 572 (896)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~Ls~~~~ 572 (896)
....+.+.+.++..+|... .++++.|++.+|.+..+|.. +++|++|++++|.++.+|.. .++|+.|++++| .
T Consensus 202 ~~~~LdLs~~~LtsLP~~l-~~~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs~N~LtsLP~l----p~sL~~L~Ls~N-~ 273 (788)
T PRK15387 202 GNAVLNVGESGLTTLPDCL-PAHITTLVIPDNNLTSLPAL--PPELRTLEVSGNQLTSLPVL----PPGLLELSIFSN-P 273 (788)
T ss_pred CCcEEEcCCCCCCcCCcch-hcCCCEEEccCCcCCCCCCC--CCCCcEEEecCCccCcccCc----ccccceeeccCC-c
Confidence 3456666666777776522 34789999999999988764 58999999999999988753 468999999999 7
Q ss_pred cccccccccCCCCCCEEeccCCCccccchhhhcCCCCCEeeccccccccCCcHHHHhccccccEEEeeccCCCccccccc
Q 002657 573 LTNLQLGISKLVSLQHLDLSLTNIEKLSGELKALVNLKCLNLEYTWSLVTIPQQLIASFLRLHVLRMFGVGDDAFEVASE 652 (896)
Q Consensus 573 i~~lp~~i~~L~~L~~L~Ls~~~i~~lp~~l~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~ 652 (896)
+..+|... .+|+.|++++|+++.+|.. +++|+.|++++| .+..+|.. ..+|+.|++.+|....+
T Consensus 274 L~~Lp~lp---~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N-~L~~Lp~l----p~~L~~L~Ls~N~L~~L----- 337 (788)
T PRK15387 274 LTHLPALP---SGLCKLWIFGNQLTSLPVL---PPGLQELSVSDN-QLASLPAL----PSELCKLWAYNNQLTSL----- 337 (788)
T ss_pred hhhhhhch---hhcCEEECcCCcccccccc---ccccceeECCCC-ccccCCCC----cccccccccccCccccc-----
Confidence 88888633 5688999999999999863 478999999998 77777751 24577788877655421
Q ss_pred ccccccCccccHHHhcCCCCCcEEEEEecCchhhhhhhccccccccceeeeeeecCCCCeeeeccccccCCcCeEeeccC
Q 002657 653 DSVLFDGGEFLVEELLGLNHLEVLSLTLRSPYALQSFLTSHKLQCCTQALFLQYFKDSTSLVVSSLANLKRLNVLRIADC 732 (896)
Q Consensus 653 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~ 732 (896)
+. ...+|+.|++++|....++.. ..+++.|.+.++.- ..+ +.+ +++|+.|++++|
T Consensus 338 -----------P~---lp~~Lq~LdLS~N~Ls~LP~l------p~~L~~L~Ls~N~L-~~L--P~l--~~~L~~LdLs~N 392 (788)
T PRK15387 338 -----------PT---LPSGLQELSVSDNQLASLPTL------PSELYKLWAYNNRL-TSL--PAL--PSGLKELIVSGN 392 (788)
T ss_pred -----------cc---cccccceEecCCCccCCCCCC------Ccccceehhhcccc-ccC--ccc--ccccceEEecCC
Confidence 00 114788999988877665543 23566666655332 222 111 357888888876
Q ss_pred CCCceEEecCCCccccccCCCccEEEeccCCCCCCCccccCCCCCCEEeEecCcccchhcccCcccCCCCCcCccccEee
Q 002657 733 EKLEELKIDYTGEIQHFGFRSLCKVEIARCQKLKDLTFLVFAPNLESIEVKSCLALEEIVSDVPEAMGNLNLFAKLQYLE 812 (896)
Q Consensus 733 ~~l~~l~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~L~~L~ 812 (896)
. +..++. .+++|+.|++++| .++.+|.+ +.+|+.|++++ +.++.++ ..+..+++|+.|+
T Consensus 393 ~-Lt~LP~---------l~s~L~~LdLS~N-~LssIP~l--~~~L~~L~Ls~-NqLt~LP-------~sl~~L~~L~~Ld 451 (788)
T PRK15387 393 R-LTSLPV---------LPSELKELMVSGN-RLTSLPML--PSGLLSLSVYR-NQLTRLP-------ESLIHLSSETTVN 451 (788)
T ss_pred c-ccCCCC---------cccCCCEEEccCC-cCCCCCcc--hhhhhhhhhcc-CcccccC-------hHHhhccCCCeEE
Confidence 4 443321 2467888888887 57777643 35788888887 4566664 3455678888888
Q ss_pred ccCCC
Q 002657 813 LLGLP 817 (896)
Q Consensus 813 l~~~~ 817 (896)
|++++
T Consensus 452 Ls~N~ 456 (788)
T PRK15387 452 LEGNP 456 (788)
T ss_pred CCCCC
Confidence 88864
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.61 E-value=1.2e-17 Score=186.10 Aligned_cols=85 Identities=32% Similarity=0.420 Sum_probs=56.3
Q ss_pred cceEEEeeccccccccc-CCCCCCccEEecccccccccchhhhccCCCCcEEEccCCcccccccccccCCCCCCEEeccC
Q 002657 515 NVSRLSLMQNRIKNLSE-IPKCPHLLTLFLNSNELKIITNDFFQFMPSLKVLSLSRNRRLTNLQLGISKLVSLQHLDLSL 593 (896)
Q Consensus 515 ~lr~L~l~~~~~~~l~~-~~~~~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~Ls~ 593 (896)
++++|++++|.+..+|. +..+.+|+.|.++.|.+...|.. ..+|++|++|.|.+| .+..+|.++..+++|++||+|+
T Consensus 46 ~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s-~~~~~~l~~lnL~~n-~l~~lP~~~~~lknl~~LdlS~ 123 (1081)
T KOG0618|consen 46 KLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSS-CSNMRNLQYLNLKNN-RLQSLPASISELKNLQYLDLSF 123 (1081)
T ss_pred eeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchh-hhhhhcchhheeccc-hhhcCchhHHhhhcccccccch
Confidence 46667777776666544 55666677777777766666643 566677777777776 6666777777777777777776
Q ss_pred CCccccch
Q 002657 594 TNIEKLSG 601 (896)
Q Consensus 594 ~~i~~lp~ 601 (896)
|.+..+|.
T Consensus 124 N~f~~~Pl 131 (1081)
T KOG0618|consen 124 NHFGPIPL 131 (1081)
T ss_pred hccCCCch
Confidence 66655554
No 14
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.61 E-value=2.5e-18 Score=173.98 Aligned_cols=256 Identities=21% Similarity=0.330 Sum_probs=132.7
Q ss_pred EEEeeccccccc-ccCCCCCCccEEecccccccccchhhhccCCCCcEEEccCCcccccccccccCCCCCCEEeccCCCc
Q 002657 518 RLSLMQNRIKNL-SEIPKCPHLLTLFLNSNELKIITNDFFQFMPSLKVLSLSRNRRLTNLQLGISKLVSLQHLDLSLTNI 596 (896)
Q Consensus 518 ~L~l~~~~~~~l-~~~~~~~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~Ls~~~i 596 (896)
.+.+++|.+..+ +++.++..|.+|++.+|.+..+|+. ++.+..+..|+.++| ++..+|+.++.+.+|+.|+.++|.+
T Consensus 49 ~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l~~lp~a-ig~l~~l~~l~vs~n-~ls~lp~~i~s~~~l~~l~~s~n~~ 126 (565)
T KOG0472|consen 49 KLILSHNDLEVLREDLKNLACLTVLNVHDNKLSQLPAA-IGELEALKSLNVSHN-KLSELPEQIGSLISLVKLDCSSNEL 126 (565)
T ss_pred hhhhccCchhhccHhhhcccceeEEEeccchhhhCCHH-HHHHHHHHHhhcccc-hHhhccHHHhhhhhhhhhhccccce
Confidence 344444544443 2344455555555555555555544 344555555555555 5555555555555555555555555
Q ss_pred cccchhhhcCCCCCEeeccccccccCCcHHHHhccccccEEEeeccCCCcccccccccccccCccccHHHhcCCCCCcEE
Q 002657 597 EKLSGELKALVNLKCLNLEYTWSLVTIPQQLIASFLRLHVLRMFGVGDDAFEVASEDSVLFDGGEFLVEELLGLNHLEVL 676 (896)
Q Consensus 597 ~~lp~~l~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L 676 (896)
.++|.+++.+..|..|+..+| .+.++|.+ +..+.+|..|.+.++... ..+...-+++.|++|
T Consensus 127 ~el~~~i~~~~~l~dl~~~~N-~i~slp~~-~~~~~~l~~l~~~~n~l~----------------~l~~~~i~m~~L~~l 188 (565)
T KOG0472|consen 127 KELPDSIGRLLDLEDLDATNN-QISSLPED-MVNLSKLSKLDLEGNKLK----------------ALPENHIAMKRLKHL 188 (565)
T ss_pred eecCchHHHHhhhhhhhcccc-ccccCchH-HHHHHHHHHhhccccchh----------------hCCHHHHHHHHHHhc
Confidence 555555555555555555544 44455544 444444444444433322 111111113333322
Q ss_pred EEEecCchhhhhhhccccccccceeeeeeecCCCCeeeeccccccCCcCeEeeccCCCCceEEecCCCccccccCCCccE
Q 002657 677 SLTLRSPYALQSFLTSHKLQCCTQALFLQYFKDSTSLVVSSLANLKRLNVLRIADCEKLEELKIDYTGEIQHFGFRSLCK 756 (896)
Q Consensus 677 ~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~L~~ 756 (896)
+.. .+.-...++.++.+.+|+.|++..|+ +..+ |++. +|..|++
T Consensus 189 d~~----------------------------~N~L~tlP~~lg~l~~L~~LyL~~Nk-i~~l-Pef~------gcs~L~E 232 (565)
T KOG0472|consen 189 DCN----------------------------SNLLETLPPELGGLESLELLYLRRNK-IRFL-PEFP------GCSLLKE 232 (565)
T ss_pred ccc----------------------------hhhhhcCChhhcchhhhHHHHhhhcc-cccC-CCCC------ccHHHHH
Confidence 221 11112222456667777777777653 3323 3442 4777777
Q ss_pred EEeccCCCCCCCcc--ccCCCCCCEEeEecCcccchhcccCcccCCCCCcCccccEeeccCCCcccccCCCCCCCCCccE
Q 002657 757 VEIARCQKLKDLTF--LVFAPNLESIEVKSCLALEEIVSDVPEAMGNLNLFAKLQYLELLGLPNLKSIYWKPLSFPRLKE 834 (896)
Q Consensus 757 L~L~~c~~l~~l~~--l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~ 834 (896)
|+++.+ .++.+|. ..++++|..|++++ +.++++|. .+.-+.+|++|++++ +.+..+|.+.+++ .|+.
T Consensus 233 lh~g~N-~i~~lpae~~~~L~~l~vLDLRd-Nklke~Pd-------e~clLrsL~rLDlSN-N~is~Lp~sLgnl-hL~~ 301 (565)
T KOG0472|consen 233 LHVGEN-QIEMLPAEHLKHLNSLLVLDLRD-NKLKEVPD-------EICLLRSLERLDLSN-NDISSLPYSLGNL-HLKF 301 (565)
T ss_pred HHhccc-HHHhhHHHHhcccccceeeeccc-cccccCch-------HHHHhhhhhhhcccC-CccccCCcccccc-eeee
Confidence 777765 6666663 34677777777777 56666542 334456677777776 4566666666655 5665
Q ss_pred EeEcCC
Q 002657 835 MTIITC 840 (896)
Q Consensus 835 L~i~~C 840 (896)
|-+.+.
T Consensus 302 L~leGN 307 (565)
T KOG0472|consen 302 LALEGN 307 (565)
T ss_pred hhhcCC
Confidence 555553
No 15
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.57 E-value=4.2e-17 Score=146.05 Aligned_cols=164 Identities=24% Similarity=0.393 Sum_probs=143.2
Q ss_pred ccCCCCCCcccceEEEeecccccccc-cCCCCCCccEEecccccccccchhhhccCCCCcEEEccCCcccccccccccCC
Q 002657 505 TEDPGVRGWENVSRLSLMQNRIKNLS-EIPKCPHLLTLFLNSNELKIITNDFFQFMPSLKVLSLSRNRRLTNLQLGISKL 583 (896)
Q Consensus 505 ~~~~~~~~~~~lr~L~l~~~~~~~l~-~~~~~~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L 583 (896)
.+++....++++.+|.+++|.+..+| .+..+.+|++|++++|+++++|.+ +++++.|+.|++.-| .+..+|..||.+
T Consensus 24 ~~~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~-issl~klr~lnvgmn-rl~~lprgfgs~ 101 (264)
T KOG0617|consen 24 EELPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTS-ISSLPKLRILNVGMN-RLNILPRGFGSF 101 (264)
T ss_pred hhcccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChh-hhhchhhhheecchh-hhhcCccccCCC
Confidence 34566667788999999999998874 489999999999999999999987 889999999999999 899999999999
Q ss_pred CCCCEEeccCCCcc--ccchhhhcCCCCCEeeccccccccCCcHHHHhccccccEEEeeccCCCcccccccccccccCcc
Q 002657 584 VSLQHLDLSLTNIE--KLSGELKALVNLKCLNLEYTWSLVTIPQQLIASFLRLHVLRMFGVGDDAFEVASEDSVLFDGGE 661 (896)
Q Consensus 584 ~~L~~L~Ls~~~i~--~lp~~l~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 661 (896)
+-|+.|||++|++. .+|..|..++.|+-|++++| ..+-+|++ ++++++|+.|.+.++.. .
T Consensus 102 p~levldltynnl~e~~lpgnff~m~tlralyl~dn-dfe~lp~d-vg~lt~lqil~lrdndl----------------l 163 (264)
T KOG0617|consen 102 PALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDN-DFEILPPD-VGKLTNLQILSLRDNDL----------------L 163 (264)
T ss_pred chhhhhhccccccccccCCcchhHHHHHHHHHhcCC-CcccCChh-hhhhcceeEEeeccCch----------------h
Confidence 99999999999876 78999999999999999999 67888987 89999999999987654 3
Q ss_pred ccHHHhcCCCCCcEEEEEecCchhhhh
Q 002657 662 FLVEELLGLNHLEVLSLTLRSPYALQS 688 (896)
Q Consensus 662 ~~~~~l~~l~~L~~L~l~~~~~~~~~~ 688 (896)
..+.+++.++.|+.|.+.++....++.
T Consensus 164 ~lpkeig~lt~lrelhiqgnrl~vlpp 190 (264)
T KOG0617|consen 164 SLPKEIGDLTRLRELHIQGNRLTVLPP 190 (264)
T ss_pred hCcHHHHHHHHHHHHhcccceeeecCh
Confidence 577889999999999999887655543
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.54 E-value=3.3e-14 Score=164.60 Aligned_cols=255 Identities=18% Similarity=0.128 Sum_probs=190.7
Q ss_pred cceEEEeecccccccccCCCCCCccEEecccccccccchhhhccCCCCcEEEccCCcccccccccccCCCCCCEEeccCC
Q 002657 515 NVSRLSLMQNRIKNLSEIPKCPHLLTLFLNSNELKIITNDFFQFMPSLKVLSLSRNRRLTNLQLGISKLVSLQHLDLSLT 594 (896)
Q Consensus 515 ~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~Ls~~ 594 (896)
.-..|+++.+.+..+|... .++|+.|++.+|.++.+|.. +++|++|+|++| .++.+|.. .++|+.|++++|
T Consensus 202 ~~~~LdLs~~~LtsLP~~l-~~~L~~L~L~~N~Lt~LP~l----p~~Lk~LdLs~N-~LtsLP~l---p~sL~~L~Ls~N 272 (788)
T PRK15387 202 GNAVLNVGESGLTTLPDCL-PAHITTLVIPDNNLTSLPAL----PPELRTLEVSGN-QLTSLPVL---PPGLLELSIFSN 272 (788)
T ss_pred CCcEEEcCCCCCCcCCcch-hcCCCEEEccCCcCCCCCCC----CCCCcEEEecCC-ccCcccCc---ccccceeeccCC
Confidence 4557899999998887621 25899999999999998863 689999999999 89999854 468999999999
Q ss_pred CccccchhhhcCCCCCEeeccccccccCCcHHHHhccccccEEEeeccCCCcccccccccccccCccccHHHhcCCCCCc
Q 002657 595 NIEKLSGELKALVNLKCLNLEYTWSLVTIPQQLIASFLRLHVLRMFGVGDDAFEVASEDSVLFDGGEFLVEELLGLNHLE 674 (896)
Q Consensus 595 ~i~~lp~~l~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~ 674 (896)
.++.+|.. +.+|+.|++++| .+..+|. .+++|+.|++++|....+. . ...+|+
T Consensus 273 ~L~~Lp~l---p~~L~~L~Ls~N-~Lt~LP~----~p~~L~~LdLS~N~L~~Lp-------------~------lp~~L~ 325 (788)
T PRK15387 273 PLTHLPAL---PSGLCKLWIFGN-QLTSLPV----LPPGLQELSVSDNQLASLP-------------A------LPSELC 325 (788)
T ss_pred chhhhhhc---hhhcCEEECcCC-ccccccc----cccccceeECCCCccccCC-------------C------Cccccc
Confidence 99998863 367889999999 7888886 3578999999988665311 0 123577
Q ss_pred EEEEEecCchhhhhhhccccccccceeeeeeecCCCCeeeeccccccCCcCeEeeccCCCCceEEecCCCccccccCCCc
Q 002657 675 VLSLTLRSPYALQSFLTSHKLQCCTQALFLQYFKDSTSLVVSSLANLKRLNVLRIADCEKLEELKIDYTGEIQHFGFRSL 754 (896)
Q Consensus 675 ~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~L 754 (896)
.|.++.|....++.+ ...|+.|+++++.- ..++ .+ .++|+.|++++| .+..++. .+.+|
T Consensus 326 ~L~Ls~N~L~~LP~l------p~~Lq~LdLS~N~L-s~LP--~l--p~~L~~L~Ls~N-~L~~LP~---------l~~~L 384 (788)
T PRK15387 326 KLWAYNNQLTSLPTL------PSGLQELSVSDNQL-ASLP--TL--PSELYKLWAYNN-RLTSLPA---------LPSGL 384 (788)
T ss_pred ccccccCcccccccc------ccccceEecCCCcc-CCCC--CC--Ccccceehhhcc-ccccCcc---------ccccc
Confidence 788888777665542 24788888887542 2222 11 357888988876 4444431 24589
Q ss_pred cEEEeccCCCCCCCccccCCCCCCEEeEecCcccchhcccCcccCCCCCcCccccEeeccCCCcccccCCCCCCCCCccE
Q 002657 755 CKVEIARCQKLKDLTFLVFAPNLESIEVKSCLALEEIVSDVPEAMGNLNLFAKLQYLELLGLPNLKSIYWKPLSFPRLKE 834 (896)
Q Consensus 755 ~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~ 834 (896)
+.|++++| .++.+|.. .++|+.|++++| .+..++. .+.+|+.|++++ ++++.+|.....+++|+.
T Consensus 385 ~~LdLs~N-~Lt~LP~l--~s~L~~LdLS~N-~LssIP~----------l~~~L~~L~Ls~-NqLt~LP~sl~~L~~L~~ 449 (788)
T PRK15387 385 KELIVSGN-RLTSLPVL--PSELKELMVSGN-RLTSLPM----------LPSGLLSLSVYR-NQLTRLPESLIHLSSETT 449 (788)
T ss_pred ceEEecCC-cccCCCCc--ccCCCEEEccCC-cCCCCCc----------chhhhhhhhhcc-CcccccChHHhhccCCCe
Confidence 99999998 67777753 478999999995 5666532 135788999988 568888887788999999
Q ss_pred EeEcCCc
Q 002657 835 MTIITCN 841 (896)
Q Consensus 835 L~i~~C~ 841 (896)
|++++++
T Consensus 450 LdLs~N~ 456 (788)
T PRK15387 450 VNLEGNP 456 (788)
T ss_pred EECCCCC
Confidence 9998864
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.53 E-value=1.8e-14 Score=168.08 Aligned_cols=119 Identities=29% Similarity=0.343 Sum_probs=69.7
Q ss_pred ccceEEEeecccccccccCCCCCCccEEecccccccccchhhhccCCCCcEEEccCCcccccccccccCCCCCCEEeccC
Q 002657 514 ENVSRLSLMQNRIKNLSEIPKCPHLLTLFLNSNELKIITNDFFQFMPSLKVLSLSRNRRLTNLQLGISKLVSLQHLDLSL 593 (896)
Q Consensus 514 ~~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~Ls~ 593 (896)
++++.|++++|.+..+|.. .+++|++|++++|.++.+|..+. .+|+.|+|++| .+..+|..+. .+|++|++++
T Consensus 199 ~~L~~L~Ls~N~LtsLP~~-l~~nL~~L~Ls~N~LtsLP~~l~---~~L~~L~Ls~N-~L~~LP~~l~--s~L~~L~Ls~ 271 (754)
T PRK15370 199 EQITTLILDNNELKSLPEN-LQGNIKTLYANSNQLTSIPATLP---DTIQEMELSIN-RITELPERLP--SALQSLDLFH 271 (754)
T ss_pred cCCcEEEecCCCCCcCChh-hccCCCEEECCCCccccCChhhh---ccccEEECcCC-ccCcCChhHh--CCCCEEECcC
Confidence 3566666666666665542 12466666666666666665422 35666666666 5666665553 3566666666
Q ss_pred CCccccchhhhcCCCCCEeeccccccccCCcHHHHhccccccEEEeeccCCC
Q 002657 594 TNIEKLSGELKALVNLKCLNLEYTWSLVTIPQQLIASFLRLHVLRMFGVGDD 645 (896)
Q Consensus 594 ~~i~~lp~~l~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~ 645 (896)
|+++.+|..+. .+|++|++++| .+..+|.. + .++|++|++++|...
T Consensus 272 N~L~~LP~~l~--~sL~~L~Ls~N-~Lt~LP~~-l--p~sL~~L~Ls~N~Lt 317 (754)
T PRK15370 272 NKISCLPENLP--EELRYLSVYDN-SIRTLPAH-L--PSGITHLNVQSNSLT 317 (754)
T ss_pred CccCccccccC--CCCcEEECCCC-ccccCccc-c--hhhHHHHHhcCCccc
Confidence 66666665443 36666666666 55666543 1 135566666555443
No 18
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.52 E-value=8.2e-16 Score=171.71 Aligned_cols=283 Identities=22% Similarity=0.277 Sum_probs=179.8
Q ss_pred ccceEEEeecccccccccCCCCCCccEEecccccccccchhhhccCCCCcEEEccCCcccccccccccCCCCCCEEeccC
Q 002657 514 ENVSRLSLMQNRIKNLSEIPKCPHLLTLFLNSNELKIITNDFFQFMPSLKVLSLSRNRRLTNLQLGISKLVSLQHLDLSL 593 (896)
Q Consensus 514 ~~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~Ls~ 593 (896)
+++++|....|.+..+..-..-.+|++++++.|.++.+| +.++.+.+|+.|+..+| .+..+|..+....+|++|++.+
T Consensus 219 ~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp-~wi~~~~nle~l~~n~N-~l~~lp~ri~~~~~L~~l~~~~ 296 (1081)
T KOG0618|consen 219 PSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLP-EWIGACANLEALNANHN-RLVALPLRISRITSLVSLSAAY 296 (1081)
T ss_pred cchheeeeccCcceeeccccccccceeeecchhhhhcch-HHHHhcccceEecccch-hHHhhHHHHhhhhhHHHHHhhh
Confidence 366777777777665444455567888888888888888 66788888888888888 7788888888888888888888
Q ss_pred CCccccchhhhcCCCCCEeeccccccccCCcHHHHhcccc-ccEEEeeccCCCcccccccccccccCccccHHHhcCCCC
Q 002657 594 TNIEKLSGELKALVNLKCLNLEYTWSLVTIPQQLIASFLR-LHVLRMFGVGDDAFEVASEDSVLFDGGEFLVEELLGLNH 672 (896)
Q Consensus 594 ~~i~~lp~~l~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~-L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 672 (896)
|.++.+|...+.++.|++|+|..| .+..+|+..+..+.. |+.|+.+.+.......- +. ..+..
T Consensus 297 nel~yip~~le~~~sL~tLdL~~N-~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~---------~e------~~~~~ 360 (1081)
T KOG0618|consen 297 NELEYIPPFLEGLKSLRTLDLQSN-NLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSY---------EE------NNHAA 360 (1081)
T ss_pred hhhhhCCCcccccceeeeeeehhc-cccccchHHHhhhhHHHHHHhhhhccccccccc---------cc------hhhHH
Confidence 888888887888888888888888 677777754544443 55555554433221100 00 01122
Q ss_pred CcEEEEEecCch--hhhhhhccccccccceeeeeeecCCCCeeeeccccccCCcCeEeeccCCCCceEEecCCCcccccc
Q 002657 673 LEVLSLTLRSPY--ALQSFLTSHKLQCCTQALFLQYFKDSTSLVVSSLANLKRLNVLRIADCEKLEELKIDYTGEIQHFG 750 (896)
Q Consensus 673 L~~L~l~~~~~~--~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~ 750 (896)
|+.|.+.+|... .++.+ ..+.+|+.|+|+++. ...++...+.+++.|+.|+|+|| .++.++.... .
T Consensus 361 Lq~LylanN~Ltd~c~p~l----~~~~hLKVLhLsyNr-L~~fpas~~~kle~LeeL~LSGN-kL~~Lp~tva------~ 428 (1081)
T KOG0618|consen 361 LQELYLANNHLTDSCFPVL----VNFKHLKVLHLSYNR-LNSFPASKLRKLEELEELNLSGN-KLTTLPDTVA------N 428 (1081)
T ss_pred HHHHHHhcCcccccchhhh----ccccceeeeeecccc-cccCCHHHHhchHHhHHHhcccc-hhhhhhHHHH------h
Confidence 333333333321 11111 113355555555532 23333356778888999999986 5666654332 4
Q ss_pred CCCccEEEeccCCCCCCCccccCCCCCCEEeEecCcccchhcccCcccCCCCCcCccccEeeccCCCcccccCCCCCCCC
Q 002657 751 FRSLCKVEIARCQKLKDLTFLVFAPNLESIEVKSCLALEEIVSDVPEAMGNLNLFAKLQYLELLGLPNLKSIYWKPLSFP 830 (896)
Q Consensus 751 ~~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~ 830 (896)
++.|+.|...++ .+..+|.+..++.|+.+|++. +.++.+.-. ... .-|+|++|++++++.+. .....|+
T Consensus 429 ~~~L~tL~ahsN-~l~~fPe~~~l~qL~~lDlS~-N~L~~~~l~-----~~~-p~p~LkyLdlSGN~~l~---~d~~~l~ 497 (1081)
T KOG0618|consen 429 LGRLHTLRAHSN-QLLSFPELAQLPQLKVLDLSC-NNLSEVTLP-----EAL-PSPNLKYLDLSGNTRLV---FDHKTLK 497 (1081)
T ss_pred hhhhHHHhhcCC-ceeechhhhhcCcceEEeccc-chhhhhhhh-----hhC-CCcccceeeccCCcccc---cchhhhH
Confidence 788888888776 788888888999999999975 566654321 111 12789999999876532 2333445
Q ss_pred CccEEeE
Q 002657 831 RLKEMTI 837 (896)
Q Consensus 831 ~L~~L~i 837 (896)
.++.+..
T Consensus 498 ~l~~l~~ 504 (1081)
T KOG0618|consen 498 VLKSLSQ 504 (1081)
T ss_pred Hhhhhhh
Confidence 4444433
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.51 E-value=2.8e-14 Score=166.44 Aligned_cols=248 Identities=20% Similarity=0.223 Sum_probs=163.4
Q ss_pred cceEEEeecccccccccCCCCCCccEEecccccccccchhhhccCCCCcEEEccCCcccccccccccCCCCCCEEeccCC
Q 002657 515 NVSRLSLMQNRIKNLSEIPKCPHLLTLFLNSNELKIITNDFFQFMPSLKVLSLSRNRRLTNLQLGISKLVSLQHLDLSLT 594 (896)
Q Consensus 515 ~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~Ls~~ 594 (896)
+...|.+.++.+..+|.. -.++|+.|++++|.++.+|...+ .+|++|++++| .++.+|..+. .+|+.|+|++|
T Consensus 179 ~~~~L~L~~~~LtsLP~~-Ip~~L~~L~Ls~N~LtsLP~~l~---~nL~~L~Ls~N-~LtsLP~~l~--~~L~~L~Ls~N 251 (754)
T PRK15370 179 NKTELRLKILGLTTIPAC-IPEQITTLILDNNELKSLPENLQ---GNIKTLYANSN-QLTSIPATLP--DTIQEMELSIN 251 (754)
T ss_pred CceEEEeCCCCcCcCCcc-cccCCcEEEecCCCCCcCChhhc---cCCCEEECCCC-ccccCChhhh--ccccEEECcCC
Confidence 456788888888887752 13689999999999999998754 58999999999 8999997665 47999999999
Q ss_pred CccccchhhhcCCCCCEeeccccccccCCcHHHHhccccccEEEeeccCCCcccccccccccccCccccHHHhcCCCCCc
Q 002657 595 NIEKLSGELKALVNLKCLNLEYTWSLVTIPQQLIASFLRLHVLRMFGVGDDAFEVASEDSVLFDGGEFLVEELLGLNHLE 674 (896)
Q Consensus 595 ~i~~lp~~l~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~ 674 (896)
.+..+|..+. .+|+.|++++| .+..+|.. + .++|+.|++++|....+. ..+ .++|+
T Consensus 252 ~L~~LP~~l~--s~L~~L~Ls~N-~L~~LP~~-l--~~sL~~L~Ls~N~Lt~LP----------------~~l--p~sL~ 307 (754)
T PRK15370 252 RITELPERLP--SALQSLDLFHN-KISCLPEN-L--PEELRYLSVYDNSIRTLP----------------AHL--PSGIT 307 (754)
T ss_pred ccCcCChhHh--CCCCEEECcCC-ccCccccc-c--CCCCcEEECCCCccccCc----------------ccc--hhhHH
Confidence 9999998775 58999999988 78888875 3 358999999988665311 111 13566
Q ss_pred EEEEEecCchhhhhhhccccccccceeeeeeecCCCCeeeeccccccCCcCeEeeccCCCCceEEecCCCccccccCCCc
Q 002657 675 VLSLTLRSPYALQSFLTSHKLQCCTQALFLQYFKDSTSLVVSSLANLKRLNVLRIADCEKLEELKIDYTGEIQHFGFRSL 754 (896)
Q Consensus 675 ~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~L 754 (896)
.|+++.|....++.. ...+|+.|.+.++.. ..++ ..+ +++|+.|++++|. +..++.. ..++|
T Consensus 308 ~L~Ls~N~Lt~LP~~-----l~~sL~~L~Ls~N~L-t~LP-~~l--~~sL~~L~Ls~N~-L~~LP~~--------lp~~L 369 (754)
T PRK15370 308 HLNVQSNSLTALPET-----LPPGLKTLEAGENAL-TSLP-ASL--PPELQVLDVSKNQ-ITVLPET--------LPPTI 369 (754)
T ss_pred HHHhcCCccccCCcc-----ccccceeccccCCcc-ccCC-hhh--cCcccEEECCCCC-CCcCChh--------hcCCc
Confidence 677776665543321 124566666666532 2221 122 2577777777763 3333221 13567
Q ss_pred cEEEeccCCCCCCCccccCCCCCCEEeEecCcccchhcccCcccCCCCCcCccccEeeccCCC
Q 002657 755 CKVEIARCQKLKDLTFLVFAPNLESIEVKSCLALEEIVSDVPEAMGNLNLFAKLQYLELLGLP 817 (896)
Q Consensus 755 ~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~ 817 (896)
+.|+|++| .++.+|.- -.++|+.|++++ +.+..++...+ .....+|++..|.+.+++
T Consensus 370 ~~LdLs~N-~Lt~LP~~-l~~sL~~LdLs~-N~L~~LP~sl~---~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 370 TTLDVSRN-ALTNLPEN-LPAALQIMQASR-NNLVRLPESLP---HFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred CEEECCCC-cCCCCCHh-HHHHHHHHhhcc-CCcccCchhHH---HHhhcCCCccEEEeeCCC
Confidence 77777777 56665531 113577777777 34555543221 122334667777776644
No 20
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.50 E-value=1.5e-14 Score=171.33 Aligned_cols=322 Identities=22% Similarity=0.300 Sum_probs=204.6
Q ss_pred EEEEcCCCCccCCCCCCcccceEEEeeccc--cccccc--CCCCCCccEEecccc-cccccchhhhccCCCCcEEEccCC
Q 002657 496 FLVCAGAGLTEDPGVRGWENVSRLSLMQNR--IKNLSE--IPKCPHLLTLFLNSN-ELKIITNDFFQFMPSLKVLSLSRN 570 (896)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~~lr~L~l~~~~--~~~l~~--~~~~~~L~~L~l~~n-~l~~i~~~~~~~l~~L~~L~Ls~~ 570 (896)
.++..+.....++.....++++.|-+..|. +..++. |..++.|++|+|++| .+.++|.. ++.+-+||||+|+++
T Consensus 527 r~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~-I~~Li~LryL~L~~t 605 (889)
T KOG4658|consen 527 RMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSS-IGELVHLRYLDLSDT 605 (889)
T ss_pred EEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChH-HhhhhhhhcccccCC
Confidence 344444444445555555689999999886 666655 788999999999998 67788876 899999999999999
Q ss_pred cccccccccccCCCCCCEEeccCCC-ccccchhhhcCCCCCEeeccccccccCCcHHHHhccccccEEEeeccCCCcccc
Q 002657 571 RRLTNLQLGISKLVSLQHLDLSLTN-IEKLSGELKALVNLKCLNLEYTWSLVTIPQQLIASFLRLHVLRMFGVGDDAFEV 649 (896)
Q Consensus 571 ~~i~~lp~~i~~L~~L~~L~Ls~~~-i~~lp~~l~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~ 649 (896)
.+..+|.++++|+.|.+||+..+. +..+|..+..|.+|++|.+.... .......++.+.+|++|....+...+
T Consensus 606 -~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~--~~~~~~~l~el~~Le~L~~ls~~~~s--- 679 (889)
T KOG4658|consen 606 -GISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA--LSNDKLLLKELENLEHLENLSITISS--- 679 (889)
T ss_pred -CccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc--cccchhhHHhhhcccchhhheeecch---
Confidence 999999999999999999999985 44556666679999999997763 12222225556666666555443322
Q ss_pred cccccccccCccccHHHhcCCCCCcEEEEEec-CchhhhhhhccccccccceeeeeeecCCCCeee--ec--ccc-ccCC
Q 002657 650 ASEDSVLFDGGEFLVEELLGLNHLEVLSLTLR-SPYALQSFLTSHKLQCCTQALFLQYFKDSTSLV--VS--SLA-NLKR 723 (896)
Q Consensus 650 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~--~~--~l~-~l~~ 723 (896)
....+.+..+..|.++..... ................+++.|.+..|....... .. ... .+++
T Consensus 680 -----------~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~ 748 (889)
T KOG4658|consen 680 -----------VLLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPN 748 (889)
T ss_pred -----------hHhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHH
Confidence 122233334444432221111 001222223333445678888888876643211 01 111 2557
Q ss_pred cCeEeeccCCCCceEEecCCCccccccCCCccEEEeccCCCCCCCcc-ccCCCCCCEEeEecCcccchhcccCcccCCCC
Q 002657 724 LNVLRIADCEKLEELKIDYTGEIQHFGFRSLCKVEIARCQKLKDLTF-LVFAPNLESIEVKSCLALEEIVSDVPEAMGNL 802 (896)
Q Consensus 724 L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~~-l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~ 802 (896)
+..+.+.+|.....+ .|. ...++|+.|.+..|+.++++.+ ...+..++.+.+.. +.+.... .....
T Consensus 749 l~~~~~~~~~~~r~l--~~~-----~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f-~~~~~l~-----~~~~l 815 (889)
T KOG4658|consen 749 LSKVSILNCHMLRDL--TWL-----LFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPF-NKLEGLR-----MLCSL 815 (889)
T ss_pred HHHHHhhcccccccc--chh-----hccCcccEEEEecccccccCCCHHHHhhhcccEEecc-cccccce-----eeecC
Confidence 777777888777743 332 2488999999999988887543 44445555433332 2222220 00344
Q ss_pred CcCccccEeeccCCCcccccCCCC----CCCCCccEEeEcCC-cCCCCCCCC
Q 002657 803 NLFAKLQYLELLGLPNLKSIYWKP----LSFPRLKEMTIITC-NKLKKLPVD 849 (896)
Q Consensus 803 ~~~~~L~~L~l~~~~~l~~i~~~~----~~~~~L~~L~i~~C-~~L~~lp~~ 849 (896)
+.||++..+.+... .++.+..+. ..+|.+..+.+.+| +++..+|..
T Consensus 816 ~~l~~i~~~~l~~~-~l~~~~ve~~p~l~~~P~~~~~~i~~~~~~~~~~~~~ 866 (889)
T KOG4658|consen 816 GGLPQLYWLPLSFL-KLEELIVEECPKLGKLPLLSTLTIVGCEEKLKEYPDG 866 (889)
T ss_pred CCCceeEecccCcc-chhheehhcCcccccCccccccceeccccceeecCCc
Confidence 55566666666552 255555443 56889999999997 899999975
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.47 E-value=7.8e-16 Score=137.97 Aligned_cols=167 Identities=24% Similarity=0.343 Sum_probs=135.1
Q ss_pred ccccccCCCCCCccEEecccccccccchhhhccCCCCcEEEccCCcccccccccccCCCCCCEEeccCCCccccchhhhc
Q 002657 526 IKNLSEIPKCPHLLTLFLNSNELKIITNDFFQFMPSLKVLSLSRNRRLTNLQLGISKLVSLQHLDLSLTNIEKLSGELKA 605 (896)
Q Consensus 526 ~~~l~~~~~~~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~Ls~~~i~~lp~~l~~ 605 (896)
+.+++.+..+.++..|.+++|.++.+|+. +..+.+|++|++++| .++++|.+++.+++|+.|+++-|.+..+|.+|+.
T Consensus 23 f~~~~gLf~~s~ITrLtLSHNKl~~vppn-ia~l~nlevln~~nn-qie~lp~~issl~klr~lnvgmnrl~~lprgfgs 100 (264)
T KOG0617|consen 23 FEELPGLFNMSNITRLTLSHNKLTVVPPN-IAELKNLEVLNLSNN-QIEELPTSISSLPKLRILNVGMNRLNILPRGFGS 100 (264)
T ss_pred HhhcccccchhhhhhhhcccCceeecCCc-HHHhhhhhhhhcccc-hhhhcChhhhhchhhhheecchhhhhcCccccCC
Confidence 44566777888999999999999999998 788999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCEeecccccccc-CCcHHHHhccccccEEEeeccCCCcccccccccccccCccccHHHhcCCCCCcEEEEEecCch
Q 002657 606 LVNLKCLNLEYTWSLV-TIPQQLIASFLRLHVLRMFGVGDDAFEVASEDSVLFDGGEFLVEELLGLNHLEVLSLTLRSPY 684 (896)
Q Consensus 606 L~~L~~L~L~~~~~l~-~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 684 (896)
++.|+.||+++|+.-+ .+|.. +-.++.|+-|++.++.+ ...+.+++++++|+.|.+..+...
T Consensus 101 ~p~levldltynnl~e~~lpgn-ff~m~tlralyl~dndf----------------e~lp~dvg~lt~lqil~lrdndll 163 (264)
T KOG0617|consen 101 FPALEVLDLTYNNLNENSLPGN-FFYMTTLRALYLGDNDF----------------EILPPDVGKLTNLQILSLRDNDLL 163 (264)
T ss_pred CchhhhhhccccccccccCCcc-hhHHHHHHHHHhcCCCc----------------ccCChhhhhhcceeEEeeccCchh
Confidence 9999999999984322 46765 77888899998887654 356677888999988888766543
Q ss_pred hhhhhhccccccccceeeeeeecCCCCeeeeccccccCCcCeEeeccCCCCceEEe
Q 002657 685 ALQSFLTSHKLQCCTQALFLQYFKDSTSLVVSSLANLKRLNVLRIADCEKLEELKI 740 (896)
Q Consensus 685 ~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~l~~ 740 (896)
+++ ..++.++.|++|.|.++ .+..+||
T Consensus 164 ~lp----------------------------keig~lt~lrelhiqgn-rl~vlpp 190 (264)
T KOG0617|consen 164 SLP----------------------------KEIGDLTRLRELHIQGN-RLTVLPP 190 (264)
T ss_pred hCc----------------------------HHHHHHHHHHHHhcccc-eeeecCh
Confidence 332 23455677788888775 4554444
No 22
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.46 E-value=1.6e-15 Score=153.85 Aligned_cols=296 Identities=21% Similarity=0.240 Sum_probs=185.6
Q ss_pred eEEEEcCCCCccCCCCCCcccceEEEeeccccccccc--CCCCCCccEEecccccccccchhhhccCCCCcEEEccCCcc
Q 002657 495 KFLVCAGAGLTEDPGVRGWENVSRLSLMQNRIKNLSE--IPKCPHLLTLFLNSNELKIITNDFFQFMPSLKVLSLSRNRR 572 (896)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~--~~~~~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~Ls~~~~ 572 (896)
..+.+.+.++.++|..- .+....|.+..|.|+.+|. |..+++||.|+|++|.|+.|.++.|.+++.|..|-+.++..
T Consensus 49 ~~VdCr~~GL~eVP~~L-P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~Nk 127 (498)
T KOG4237|consen 49 GIVDCRGKGLTEVPANL-PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNK 127 (498)
T ss_pred ceEEccCCCcccCcccC-CCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCc
Confidence 34556677777776422 2466778888888888876 78888888888888888888888888888887777776448
Q ss_pred cccccc-cccCCCCCCEEeccCCCccccc-hhhhcCCCCCEeeccccccccCCcHHHHhccccccEEEeeccCCCc---c
Q 002657 573 LTNLQL-GISKLVSLQHLDLSLTNIEKLS-GELKALVNLKCLNLEYTWSLVTIPQQLIASFLRLHVLRMFGVGDDA---F 647 (896)
Q Consensus 573 i~~lp~-~i~~L~~L~~L~Ls~~~i~~lp-~~l~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~---~ 647 (896)
|+.+|. .|+.|..|+.|.+.-|++..++ ..+..|++|..|.+.+| .+..++.+.+..+.+++++.+..+.+.. .
T Consensus 128 I~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn-~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL 206 (498)
T KOG4237|consen 128 ITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDN-KIQSICKGTFQGLAAIKTLHLAQNPFICDCNL 206 (498)
T ss_pred hhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccch-hhhhhccccccchhccchHhhhcCcccccccc
Confidence 888886 4788888888888888887664 44788888888888888 6777877667778888888776554221 0
Q ss_pred cccccccccccCccccHHHhcCCCCCcEEEEEecCchhhhhhhccccccccceee---eeeecCCCCeeeeccccccCCc
Q 002657 648 EVASEDSVLFDGGEFLVEELLGLNHLEVLSLTLRSPYALQSFLTSHKLQCCTQAL---FLQYFKDSTSLVVSSLANLKRL 724 (896)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L---~l~~~~~~~~~~~~~l~~l~~L 724 (896)
.+..+. ....+.+++.........+........+ ..++..+++.+ ....|......+...+..+++|
T Consensus 207 ~wla~~------~a~~~ietsgarc~~p~rl~~~Ri~q~~----a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L 276 (498)
T KOG4237|consen 207 PWLADD------LAMNPIETSGARCVSPYRLYYKRINQED----ARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNL 276 (498)
T ss_pred chhhhH------HhhchhhcccceecchHHHHHHHhcccc----hhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccc
Confidence 000000 0001111111111111111111100000 00111111111 1111111112222357889999
Q ss_pred CeEeeccCCCCceEEecCCCccccccCCCccEEEeccCCCCCCCc--cccCCCCCCEEeEecCcccchhcccCcccCCCC
Q 002657 725 NVLRIADCEKLEELKIDYTGEIQHFGFRSLCKVEIARCQKLKDLT--FLVFAPNLESIEVKSCLALEEIVSDVPEAMGNL 802 (896)
Q Consensus 725 ~~L~L~~~~~l~~l~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~--~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~ 802 (896)
+.|++++| .++.+...|+. ....++.|.|..+ ++..+. .+.++..|+.|+|.+ +.++.+.+ ..+
T Consensus 277 ~~lnlsnN-~i~~i~~~aFe-----~~a~l~eL~L~~N-~l~~v~~~~f~~ls~L~tL~L~~-N~it~~~~------~aF 342 (498)
T KOG4237|consen 277 RKLNLSNN-KITRIEDGAFE-----GAAELQELYLTRN-KLEFVSSGMFQGLSGLKTLSLYD-NQITTVAP------GAF 342 (498)
T ss_pred eEeccCCC-ccchhhhhhhc-----chhhhhhhhcCcc-hHHHHHHHhhhccccceeeeecC-CeeEEEec------ccc
Confidence 99999986 56656565553 5788999999987 677765 366889999999999 67777644 455
Q ss_pred CcCccccEeeccCC
Q 002657 803 NLFAKLQYLELLGL 816 (896)
Q Consensus 803 ~~~~~L~~L~l~~~ 816 (896)
....+|.+|.+-.+
T Consensus 343 ~~~~~l~~l~l~~N 356 (498)
T KOG4237|consen 343 QTLFSLSTLNLLSN 356 (498)
T ss_pred cccceeeeeehccC
Confidence 56667777777643
No 23
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.39 E-value=1.4e-11 Score=153.66 Aligned_cols=288 Identities=16% Similarity=0.201 Sum_probs=178.7
Q ss_pred ccchHHHHHHHHHHhccCCCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeC-CccCHHHHHHHHHHhcCCC
Q 002657 156 VVGLQSQLEQVWRCLVEEPAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVS-KDLRLENIQEIIGGKIGLM 234 (896)
Q Consensus 156 ~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~-~~~~~~~~~~~i~~~l~~~ 234 (896)
+|-|+.-.+.+-+ ....+++.|.|++|.||||++.++.+.. . .++|+++. .+.++..+...++..++..
T Consensus 16 ~~~R~rl~~~l~~---~~~~~~~~v~apaG~GKTtl~~~~~~~~----~---~~~w~~l~~~d~~~~~f~~~l~~~l~~~ 85 (903)
T PRK04841 16 TVVRERLLAKLSG---ANNYRLVLVTSPAGYGKTTLISQWAAGK----N---NLGWYSLDESDNQPERFASYLIAALQQA 85 (903)
T ss_pred cCcchHHHHHHhc---ccCCCeEEEECCCCCCHHHHHHHHHHhC----C---CeEEEecCcccCCHHHHHHHHHHHHHHh
Confidence 7778655554432 1367899999999999999999988542 1 58999996 4456666767777766421
Q ss_pred Ccc-----------ccccCHHHHHHHHHHHhC--CceEEEEEecCCCcc--ccc-cccccCCCCCCCCcEEEEecCCHHH
Q 002657 235 NES-----------WKSKSLQEKSLDIFKILG--EKKFVLLLDDLWQRV--DLT-KVGVPLPSPQSSASKVVFTTRSEEI 298 (896)
Q Consensus 235 ~~~-----------~~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~--~~~-~l~~~~~~~~~~~s~iivTtR~~~v 298 (896)
... ....+.......+...+. +.+++|||||+.... ... .+...+. ....+.++|||||...-
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~-~~~~~~~lv~~sR~~~~ 164 (903)
T PRK04841 86 TNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLR-HQPENLTLVVLSRNLPP 164 (903)
T ss_pred cCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHH-hCCCCeEEEEEeCCCCC
Confidence 110 001122333444444443 689999999995432 222 2222222 34556789899997421
Q ss_pred ---HhhhccCcceecc----CCChHhHHHHHHHHhcCcccCCCCChHHHHHHHHHHhCCCchHHHHHHHhhcCCCCHHHH
Q 002657 299 ---CGLMEAQKKFKVA----CLSDKDAWELFCHKVGEETLNNHPDIPELAQTVAKECGGMPLALITIGRAMSCKRTPQEW 371 (896)
Q Consensus 299 ---~~~~~~~~~~~l~----~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~~~~l~~~~~~~~w 371 (896)
...........+. +|+.+|+.++|....+..- -.+....|.+.|+|.|+++..++..+.......
T Consensus 165 ~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~------~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~~-- 236 (903)
T PRK04841 165 LGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPI------EAAESSRLCDDVEGWATALQLIALSARQNNSSL-- 236 (903)
T ss_pred CchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCCC------CHHHHHHHHHHhCChHHHHHHHHHHHhhCCCch--
Confidence 1111122344555 9999999999987665321 245578999999999999998887765432110
Q ss_pred HHHHHHHhcccCCCCCC-ccchhhhHHh-hhcCCCcchhhHHhhhhccCCCCccccHHHHHHHHHhcCCCCchhhhhHHH
Q 002657 372 RHAIQVLRTTASEFPGL-GNEVYPLLKF-SYESLPNDIVRSCLLYCSLYPEDYRISKENLIDCWIGESFLNERVKFEVQN 449 (896)
Q Consensus 372 ~~~l~~l~~~~~~~~~~-~~~~~~~l~~-sy~~L~~~~~k~cfl~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~ 449 (896)
......+ .+. ...+...+.- .|+.||+ ..+..++..|+++ .|+.+ +.. .+.. .+
T Consensus 237 ~~~~~~~-------~~~~~~~~~~~l~~~v~~~l~~-~~~~~l~~~a~~~---~~~~~-l~~-----~l~~-------~~ 292 (903)
T PRK04841 237 HDSARRL-------AGINASHLSDYLVEEVLDNVDL-ETRHFLLRCSVLR---SMNDA-LIV-----RVTG-------EE 292 (903)
T ss_pred hhhhHhh-------cCCCchhHHHHHHHHHHhcCCH-HHHHHHHHhcccc---cCCHH-HHH-----HHcC-------CC
Confidence 0111111 110 1245554433 3789999 8999999999986 33322 222 1111 12
Q ss_pred HHHHHHHHHHHhccccc-c--CCccchhhHHHHhHHHhhh
Q 002657 450 QGYYILGILVHACLLEE-V--GEDEVKMHDVIRDMALWIA 486 (896)
Q Consensus 450 ~~~~~l~~L~~~~ll~~-~--~~~~~~mHdlv~d~a~~~~ 486 (896)
.+...+++|.+.+++.. . +...|++|++++++.+...
T Consensus 293 ~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 293 NGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRC 332 (903)
T ss_pred cHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHH
Confidence 34667999999999653 3 3347899999999998764
No 24
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.38 E-value=1.4e-14 Score=147.14 Aligned_cols=281 Identities=18% Similarity=0.196 Sum_probs=178.4
Q ss_pred ccccccccCCCCCCccEEecccccccccchhhhccCCCCcEEEccCCcccccc-cccccCCCCCCEEeccC-CCccccch
Q 002657 524 NRIKNLSEIPKCPHLLTLFLNSNELKIITNDFFQFMPSLKVLSLSRNRRLTNL-QLGISKLVSLQHLDLSL-TNIEKLSG 601 (896)
Q Consensus 524 ~~~~~l~~~~~~~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~Ls~~~~i~~l-p~~i~~L~~L~~L~Ls~-~~i~~lp~ 601 (896)
..+.++|.- --+.-..+.|..|.|+.||+++|+.+++||.||||+| .|+.+ |..|..|.+|-.|-+-+ |+|+.+|+
T Consensus 56 ~GL~eVP~~-LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N-~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k 133 (498)
T KOG4237|consen 56 KGLTEVPAN-LPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKN-NISFIAPDAFKGLASLLSLVLYGNNKITDLPK 133 (498)
T ss_pred CCcccCccc-CCCcceEEEeccCCcccCChhhccchhhhceeccccc-chhhcChHhhhhhHhhhHHHhhcCCchhhhhh
Confidence 344445431 1245678899999999999999999999999999999 88876 88999999987776666 89999997
Q ss_pred h-hhcCCCCCEeeccccccccCCcHHHHhccccccEEEeeccCCCcccccccccccccCccccHHHhcCCCCCcEEEEEe
Q 002657 602 E-LKALVNLKCLNLEYTWSLVTIPQQLIASFLRLHVLRMFGVGDDAFEVASEDSVLFDGGEFLVEELLGLNHLEVLSLTL 680 (896)
Q Consensus 602 ~-l~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 680 (896)
+ |++|..|+.|.+.-| ++..++.+++..|++|..|.+.++.+..+ .-..+..+..++.+.+..
T Consensus 134 ~~F~gL~slqrLllNan-~i~Cir~~al~dL~~l~lLslyDn~~q~i---------------~~~tf~~l~~i~tlhlA~ 197 (498)
T KOG4237|consen 134 GAFGGLSSLQRLLLNAN-HINCIRQDALRDLPSLSLLSLYDNKIQSI---------------CKGTFQGLAAIKTLHLAQ 197 (498)
T ss_pred hHhhhHHHHHHHhcChh-hhcchhHHHHHHhhhcchhcccchhhhhh---------------ccccccchhccchHhhhc
Confidence 6 789999999999988 78889999999999999999998765421 111344555666665554
Q ss_pred cCchh---hhh---hhccc----cccccceeeeeeecCCCCeeeeccccccCCcCeE--e-eccCCCCceEEecCCCccc
Q 002657 681 RSPYA---LQS---FLTSH----KLQCCTQALFLQYFKDSTSLVVSSLANLKRLNVL--R-IADCEKLEELKIDYTGEIQ 747 (896)
Q Consensus 681 ~~~~~---~~~---~~~~~----~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L--~-L~~~~~l~~l~~~~~~~~~ 747 (896)
+.... ++- ..... .-.++.....+.+... .......+ ...++++ . .+.|......|...
T Consensus 198 np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri-~q~~a~kf--~c~~esl~s~~~~~d~~d~~cP~~c----- 269 (498)
T KOG4237|consen 198 NPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRI-NQEDARKF--LCSLESLPSRLSSEDFPDSICPAKC----- 269 (498)
T ss_pred CccccccccchhhhHHhhchhhcccceecchHHHHHHHh-cccchhhh--hhhHHhHHHhhccccCcCCcChHHH-----
Confidence 43111 000 00000 0000111111110000 00000000 0112222 1 11221111111111
Q ss_pred cccCCCccEEEeccCCCCCCCc--cccCCCCCCEEeEecCcccchhcccCcccCCCCCcCccccEeeccCCCcccccCC-
Q 002657 748 HFGFRSLCKVEIARCQKLKDLT--FLVFAPNLESIEVKSCLALEEIVSDVPEAMGNLNLFAKLQYLELLGLPNLKSIYW- 824 (896)
Q Consensus 748 ~~~~~~L~~L~L~~c~~l~~l~--~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~- 824 (896)
+..+++|++|+|+++ .++.+. ++..+..+++|.|.. +.++.+.. ..+.++..|+.|+|.++ +++.+.+
T Consensus 270 f~~L~~L~~lnlsnN-~i~~i~~~aFe~~a~l~eL~L~~-N~l~~v~~------~~f~~ls~L~tL~L~~N-~it~~~~~ 340 (498)
T KOG4237|consen 270 FKKLPNLRKLNLSNN-KITRIEDGAFEGAAELQELYLTR-NKLEFVSS------GMFQGLSGLKTLSLYDN-QITTVAPG 340 (498)
T ss_pred HhhcccceEeccCCC-ccchhhhhhhcchhhhhhhhcCc-chHHHHHH------HhhhccccceeeeecCC-eeEEEecc
Confidence 235889999999998 777765 578889999999988 67777643 56777899999999994 5555433
Q ss_pred CCCCCCCccEEeEcC
Q 002657 825 KPLSFPRLKEMTIIT 839 (896)
Q Consensus 825 ~~~~~~~L~~L~i~~ 839 (896)
......+|.+|.+-.
T Consensus 341 aF~~~~~l~~l~l~~ 355 (498)
T KOG4237|consen 341 AFQTLFSLSTLNLLS 355 (498)
T ss_pred cccccceeeeeehcc
Confidence 344556677776653
No 25
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.24 E-value=6.9e-10 Score=123.98 Aligned_cols=289 Identities=15% Similarity=0.089 Sum_probs=164.0
Q ss_pred cccchHHHHHHHHHHhcc----CCCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHh
Q 002657 155 IVVGLQSQLEQVWRCLVE----EPAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDLRLENIQEIIGGK 230 (896)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 230 (896)
.++||++++++|...+.. .....+.|+|++|+|||++++.++++. ......-..+++.+....+...++..++.+
T Consensus 31 ~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l-~~~~~~~~~v~in~~~~~~~~~~~~~i~~~ 109 (394)
T PRK00411 31 NLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEEL-EEIAVKVVYVYINCQIDRTRYAIFSEIARQ 109 (394)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHH-HHhcCCcEEEEEECCcCCCHHHHHHHHHHH
Confidence 389999999999998843 344668899999999999999999987 222222346677777777788899999999
Q ss_pred cCCCCccccccCHHHHHHHHHHHhC--CceEEEEEecCCCcc------ccccccccCCCCCCCCc--EEEEecCCHHHHh
Q 002657 231 IGLMNESWKSKSLQEKSLDIFKILG--EKKFVLLLDDLWQRV------DLTKVGVPLPSPQSSAS--KVVFTTRSEEICG 300 (896)
Q Consensus 231 l~~~~~~~~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~------~~~~l~~~~~~~~~~~s--~iivTtR~~~v~~ 300 (896)
+..........+..+....+.+.+. +++.+||||+++... .+..+...+. ...++ .+|.++....+..
T Consensus 110 l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~--~~~~~~v~vI~i~~~~~~~~ 187 (394)
T PRK00411 110 LFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHE--EYPGARIGVIGISSDLTFLY 187 (394)
T ss_pred hcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhh--ccCCCeEEEEEEECCcchhh
Confidence 8652211122345666777777775 457899999997532 1222222221 11232 3566665543322
Q ss_pred hhc-------cCcceeccCCChHhHHHHHHHHhcCcccCCCCChHHHHHHHHHH----hCCCchHHHHHHHhh--c--C-
Q 002657 301 LME-------AQKKFKVACLSDKDAWELFCHKVGEETLNNHPDIPELAQTVAKE----CGGMPLALITIGRAM--S--C- 364 (896)
Q Consensus 301 ~~~-------~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~----~~GlPlai~~~~~~l--~--~- 364 (896)
... ....+.+.+++.++..+++..++.... ....--.+....+++. .|..+.|+..+-.+. + .
T Consensus 188 ~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~-~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~ 266 (394)
T PRK00411 188 ILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGF-YPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREG 266 (394)
T ss_pred hcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhc-ccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcC
Confidence 211 124678999999999999998764221 0000112333444444 455777776654322 1 1
Q ss_pred C--CCHHHHHHHHHHHhcccCCCCCCccchhhhHHhhhcCCCcchhhHHhhhhcc-CCC-CccccHHHHHHH--HHhc--
Q 002657 365 K--RTPQEWRHAIQVLRTTASEFPGLGNEVYPLLKFSYESLPNDIVRSCLLYCSL-YPE-DYRISKENLIDC--WIGE-- 436 (896)
Q Consensus 365 ~--~~~~~w~~~l~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cfl~~~~-fp~-~~~i~~~~li~~--w~a~-- 436 (896)
. -+.+....+.+.... ....-.+..||. +.|..+..++. ... ...+....+... .+++
T Consensus 267 ~~~I~~~~v~~a~~~~~~-------------~~~~~~~~~L~~-~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~ 332 (394)
T PRK00411 267 SRKVTEEDVRKAYEKSEI-------------VHLSEVLRTLPL-HEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEEL 332 (394)
T ss_pred CCCcCHHHHHHHHHHHHH-------------HHHHHHHhcCCH-HHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHc
Confidence 1 245556555554321 223456789998 54444333322 111 123444443321 1221
Q ss_pred CCCCchhhhhHHHHHHHHHHHHHHhccccc
Q 002657 437 SFLNERVKFEVQNQGYYILGILVHACLLEE 466 (896)
Q Consensus 437 g~i~~~~~~~~~~~~~~~l~~L~~~~ll~~ 466 (896)
|.-+ . .......|+.+|...+++..
T Consensus 333 ~~~~-~----~~~~~~~~l~~L~~~glI~~ 357 (394)
T PRK00411 333 GYEP-R----THTRFYEYINKLDMLGIINT 357 (394)
T ss_pred CCCc-C----cHHHHHHHHHHHHhcCCeEE
Confidence 1110 0 11234557777777777764
No 26
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.21 E-value=2.3e-09 Score=112.97 Aligned_cols=182 Identities=13% Similarity=0.209 Sum_probs=115.4
Q ss_pred CCCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHhcCCCCccccccCHHHHHHHHHH
Q 002657 173 EPAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDLRLENIQEIIGGKIGLMNESWKSKSLQEKSLDIFK 252 (896)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 252 (896)
....++.|+|++|+||||+++.+++.. .. ... ..+|+ +....+..+++..|+..++.+.. ..+.......+..
T Consensus 41 ~~~~~~~l~G~~G~GKTtl~~~l~~~l-~~-~~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~---~~~~~~~~~~l~~ 113 (269)
T TIGR03015 41 QREGFILITGEVGAGKTTLIRNLLKRL-DQ-ERV-VAAKL-VNTRVDAEDLLRMVAADFGLETE---GRDKAALLRELED 113 (269)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHhc-CC-CCe-EEeee-eCCCCCHHHHHHHHHHHcCCCCC---CCCHHHHHHHHHH
Confidence 345689999999999999999999886 21 111 22333 33345778899999999887542 2222233333332
Q ss_pred H-----hCCceEEEEEecCCCcc--ccccccccC--CCCCCCCcEEEEecCCHHHHhhhc----------cCcceeccCC
Q 002657 253 I-----LGEKKFVLLLDDLWQRV--DLTKVGVPL--PSPQSSASKVVFTTRSEEICGLME----------AQKKFKVACL 313 (896)
Q Consensus 253 ~-----l~~kr~LlVlDdv~~~~--~~~~l~~~~--~~~~~~~s~iivTtR~~~v~~~~~----------~~~~~~l~~L 313 (896)
. ..+++.++|+||+|... .++.+.... .........|++|.... ....+. ....++++++
T Consensus 114 ~l~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l 192 (269)
T TIGR03015 114 FLIEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPL 192 (269)
T ss_pred HHHHHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCC
Confidence 2 26788999999998643 344433211 10122233456665533 221111 1345789999
Q ss_pred ChHhHHHHHHHHhcCcccCCC-CChHHHHHHHHHHhCCCchHHHHHHHhh
Q 002657 314 SDKDAWELFCHKVGEETLNNH-PDIPELAQTVAKECGGMPLALITIGRAM 362 (896)
Q Consensus 314 ~~~e~~~Lf~~~~~~~~~~~~-~~~~~~~~~i~~~~~GlPlai~~~~~~l 362 (896)
+.+|..+++...+........ .-..+..+.|++.++|.|..|..++..+
T Consensus 193 ~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 193 DREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred CHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 999999999887754321111 2235788999999999999999888765
No 27
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.17 E-value=1.5e-10 Score=119.42 Aligned_cols=197 Identities=20% Similarity=0.256 Sum_probs=103.0
Q ss_pred ccchHHHHHHHHHHhccCCCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHH---------
Q 002657 156 VVGLQSQLEQVWRCLVEEPAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDLRLENIQEI--------- 226 (896)
Q Consensus 156 ~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~--------- 226 (896)
|+||+.++++|.+++..+..+.+.|+|+.|+|||+|++++.+.. . ...+ .++|+...+......+...
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~-~-~~~~-~~~y~~~~~~~~~~~~~~~~~~~~~~~~ 77 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINEL-K-EKGY-KVVYIDFLEESNESSLRSFIEETSLADE 77 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHC-T---EE-CCCHHCCTTBSHHHHHHHHHHHHHHHCH
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHh-h-hcCC-cEEEEecccchhhhHHHHHHHHHHHHHH
Confidence 68999999999999988878999999999999999999999876 1 1122 3445544443322211111
Q ss_pred ----HHHhcCCCC-cc---ccccCHHHHHHHHHHHhC--CceEEEEEecCCCcc-cc-------ccccccCCC-CCCCCc
Q 002657 227 ----IGGKIGLMN-ES---WKSKSLQEKSLDIFKILG--EKKFVLLLDDLWQRV-DL-------TKVGVPLPS-PQSSAS 287 (896)
Q Consensus 227 ----i~~~l~~~~-~~---~~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~-~~-------~~l~~~~~~-~~~~~s 287 (896)
+...+.... .. ............+.+.+. +++++||+||+.... .. ..+...+.. ......
T Consensus 78 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 157 (234)
T PF01637_consen 78 LSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNV 157 (234)
T ss_dssp CHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTE
T ss_pred HHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCc
Confidence 111111100 00 011122233344444443 345999999996444 11 111111110 122333
Q ss_pred EEEEecCCHHHHhh--------hccCcceeccCCChHhHHHHHHHHhcCcccCCCCChHHHHHHHHHHhCCCchHHHH
Q 002657 288 KVVFTTRSEEICGL--------MEAQKKFKVACLSDKDAWELFCHKVGEETLNNHPDIPELAQTVAKECGGMPLALIT 357 (896)
Q Consensus 288 ~iivTtR~~~v~~~--------~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~ 357 (896)
.+|+++........ .+....+.+++|+.+++++++...+... ... +.-++..++|...+||+|..|..
T Consensus 158 ~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~~~-~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 158 SIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-IKL-PFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp EEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC--------HHHHHHHHHHHTT-HHHHHH
T ss_pred eEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-hcc-cCCHHHHHHHHHHhCCCHHHHhc
Confidence 44455544444322 1223459999999999999999976543 111 22355679999999999998864
No 28
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.14 E-value=1.2e-09 Score=123.10 Aligned_cols=298 Identities=16% Similarity=0.147 Sum_probs=188.5
Q ss_pred cccCCCCCcccchHHHHHHHHHHhccC-CCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCc-cCHHHHH
Q 002657 147 ADERPTEPIVVGLQSQLEQVWRCLVEE-PAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKD-LRLENIQ 224 (896)
Q Consensus 147 ~~~~~~~~~~vGr~~~~~~l~~~L~~~-~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~ 224 (896)
+.|.++.+ .|-|. ++++.|... +.+.+.|..++|.|||||+.+..... ..-..+.|.+++.. .++..+.
T Consensus 13 ~~P~~~~~-~v~R~----rL~~~L~~~~~~RL~li~APAGfGKttl~aq~~~~~----~~~~~v~Wlslde~dndp~rF~ 83 (894)
T COG2909 13 VRPVRPDN-YVVRP----RLLDRLRRANDYRLILISAPAGFGKTTLLAQWRELA----ADGAAVAWLSLDESDNDPARFL 83 (894)
T ss_pred CCCCCccc-ccccH----HHHHHHhcCCCceEEEEeCCCCCcHHHHHHHHHHhc----CcccceeEeecCCccCCHHHHH
Confidence 33333333 56664 555556554 78999999999999999999998732 34457899998764 5688888
Q ss_pred HHHHHhcCCCCcc-----------ccccCHHHHHHHHHHHhC--CceEEEEEecCCCc--cccccccccCCCCCCCCcEE
Q 002657 225 EIIGGKIGLMNES-----------WKSKSLQEKSLDIFKILG--EKKFVLLLDDLWQR--VDLTKVGVPLPSPQSSASKV 289 (896)
Q Consensus 225 ~~i~~~l~~~~~~-----------~~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~~s~i 289 (896)
.-++..++...+. ....+...+...+...+. .++..+||||..-. .....-...|......+-..
T Consensus 84 ~yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~l 163 (894)
T COG2909 84 SYLIAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTL 163 (894)
T ss_pred HHHHHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEE
Confidence 8888887632211 122333445555555554 46899999998532 11221111122145568899
Q ss_pred EEecCCHHHH---hhhccCcceecc----CCChHhHHHHHHHHhcCcccCCCCChHHHHHHHHHHhCCCchHHHHHHHhh
Q 002657 290 VFTTRSEEIC---GLMEAQKKFKVA----CLSDKDAWELFCHKVGEETLNNHPDIPELAQTVAKECGGMPLALITIGRAM 362 (896)
Q Consensus 290 ivTtR~~~v~---~~~~~~~~~~l~----~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~~~~l 362 (896)
|||||+..-. +..-.+..++++ .|+.+|+-++|....+..- -+.-.+.+.+..+|-+-|+..++=.+
T Consensus 164 vv~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~L------d~~~~~~L~~~teGW~~al~L~aLa~ 237 (894)
T COG2909 164 VVTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLPL------DAADLKALYDRTEGWAAALQLIALAL 237 (894)
T ss_pred EEEeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCCCC------ChHHHHHHHhhcccHHHHHHHHHHHc
Confidence 9999987432 111112233333 6889999999988764322 14457889999999999998888777
Q ss_pred cCCCCHHHHHHHHHHHhcccCCCCCCccchhhhH-HhhhcCCCcchhhHHhhhhccCCCCccccHHHHHHHHHhcCCCCc
Q 002657 363 SCKRTPQEWRHAIQVLRTTASEFPGLGNEVYPLL-KFSYESLPNDIVRSCLLYCSLYPEDYRISKENLIDCWIGESFLNE 441 (896)
Q Consensus 363 ~~~~~~~~w~~~l~~l~~~~~~~~~~~~~~~~~l-~~sy~~L~~~~~k~cfl~~~~fp~~~~i~~~~li~~w~a~g~i~~ 441 (896)
+.+.+.+.--..+. +..+.+.+-| .--++.||+ .+|..++-||+++.= -..|+..
T Consensus 238 ~~~~~~~q~~~~Ls----------G~~~~l~dYL~eeVld~Lp~-~l~~FLl~~svl~~f----~~eL~~~--------- 293 (894)
T COG2909 238 RNNTSAEQSLRGLS----------GAASHLSDYLVEEVLDRLPP-ELRDFLLQTSVLSRF----NDELCNA--------- 293 (894)
T ss_pred cCCCcHHHHhhhcc----------chHHHHHHHHHHHHHhcCCH-HHHHHHHHHHhHHHh----hHHHHHH---------
Confidence 74333332211111 1111122221 234678999 899999999998541 1122221
Q ss_pred hhhhhHHHHHHHHHHHHHHhcccccc---CCccchhhHHHHhHHHhhh
Q 002657 442 RVKFEVQNQGYYILGILVHACLLEEV---GEDEVKMHDVIRDMALWIA 486 (896)
Q Consensus 442 ~~~~~~~~~~~~~l~~L~~~~ll~~~---~~~~~~mHdlv~d~a~~~~ 486 (896)
-+-++.+...+++|.+++|+-.. ....|+.|.++.||-+.-.
T Consensus 294 ---Ltg~~ng~amLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~ 338 (894)
T COG2909 294 ---LTGEENGQAMLEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRL 338 (894)
T ss_pred ---HhcCCcHHHHHHHHHhCCCceeeecCCCceeehhHHHHHHHHhhh
Confidence 12245566789999999998644 6789999999999987544
No 29
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.14 E-value=1e-11 Score=134.83 Aligned_cols=136 Identities=29% Similarity=0.264 Sum_probs=71.7
Q ss_pred CCCCCccEEecccccccccc----hhhhccCCCCcEEEccCCccccc-------ccccccCCCCCCEEeccCCCcc-ccc
Q 002657 533 PKCPHLLTLFLNSNELKIIT----NDFFQFMPSLKVLSLSRNRRLTN-------LQLGISKLVSLQHLDLSLTNIE-KLS 600 (896)
Q Consensus 533 ~~~~~L~~L~l~~n~l~~i~----~~~~~~l~~L~~L~Ls~~~~i~~-------lp~~i~~L~~L~~L~Ls~~~i~-~lp 600 (896)
..+++|+.|++++|.++... ...+...+.|+.|+++++ .+.. ++..+.++++|++|++++|.+. ..+
T Consensus 20 ~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~-~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 98 (319)
T cd00116 20 PKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLN-ETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGC 98 (319)
T ss_pred HHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEecccc-ccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHH
Confidence 44555777777777553211 122445666777777766 3331 3344556667777777776665 334
Q ss_pred hhhhcCCC---CCEeeccccccccC-----CcHHHHhcc-ccccEEEeeccCCCcccccccccccccCccccHHHhcCCC
Q 002657 601 GELKALVN---LKCLNLEYTWSLVT-----IPQQLIASF-LRLHVLRMFGVGDDAFEVASEDSVLFDGGEFLVEELLGLN 671 (896)
Q Consensus 601 ~~l~~L~~---L~~L~L~~~~~l~~-----lp~~~i~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 671 (896)
..+..+.+ |++|++++| .+.. +.. .+..+ ++|+.|++.+|...... .......+..+.
T Consensus 99 ~~~~~l~~~~~L~~L~ls~~-~~~~~~~~~l~~-~l~~~~~~L~~L~L~~n~l~~~~-----------~~~~~~~~~~~~ 165 (319)
T cd00116 99 GVLESLLRSSSLQELKLNNN-GLGDRGLRLLAK-GLKDLPPALEKLVLGRNRLEGAS-----------CEALAKALRANR 165 (319)
T ss_pred HHHHHHhccCcccEEEeeCC-ccchHHHHHHHH-HHHhCCCCceEEEcCCCcCCchH-----------HHHHHHHHHhCC
Confidence 44444444 777777766 3331 111 13444 66677776666544100 012333455555
Q ss_pred CCcEEEEEecC
Q 002657 672 HLEVLSLTLRS 682 (896)
Q Consensus 672 ~L~~L~l~~~~ 682 (896)
+|++|+++.+.
T Consensus 166 ~L~~L~l~~n~ 176 (319)
T cd00116 166 DLKELNLANNG 176 (319)
T ss_pred CcCEEECcCCC
Confidence 66666665544
No 30
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.14 E-value=5.4e-11 Score=113.12 Aligned_cols=127 Identities=28% Similarity=0.346 Sum_probs=50.1
Q ss_pred CcccceEEEeecccccccccCC-CCCCccEEecccccccccchhhhccCCCCcEEEccCCcccccccccc-cCCCCCCEE
Q 002657 512 GWENVSRLSLMQNRIKNLSEIP-KCPHLLTLFLNSNELKIITNDFFQFMPSLKVLSLSRNRRLTNLQLGI-SKLVSLQHL 589 (896)
Q Consensus 512 ~~~~lr~L~l~~~~~~~l~~~~-~~~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i-~~L~~L~~L 589 (896)
+..+++.|++.+|.+..+..+. .+.+|+.|++++|.++.++. +..++.|++|++++| .++.++..+ ..+++|+.|
T Consensus 17 n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~--l~~L~~L~~L~L~~N-~I~~i~~~l~~~lp~L~~L 93 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEG--LPGLPRLKTLDLSNN-RISSISEGLDKNLPNLQEL 93 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS--S--TT------TT--EEE--SS----S-CHHHHHH-TT--EE
T ss_pred cccccccccccccccccccchhhhhcCCCEEECCCCCCccccC--ccChhhhhhcccCCC-CCCccccchHHhCCcCCEE
Confidence 3346788888888888877766 57888888888888887765 777888888888888 788776555 357888888
Q ss_pred eccCCCccccc--hhhhcCCCCCEeeccccccccCCc---HHHHhccccccEEEeecc
Q 002657 590 DLSLTNIEKLS--GELKALVNLKCLNLEYTWSLVTIP---QQLIASFLRLHVLRMFGV 642 (896)
Q Consensus 590 ~Ls~~~i~~lp--~~l~~L~~L~~L~L~~~~~l~~lp---~~~i~~l~~L~~L~l~~~ 642 (896)
++++|+|..+. ..+..+++|++|++.+|. +..-+ ..++..+++|+.|+....
T Consensus 94 ~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NP-v~~~~~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 94 YLSNNKISDLNELEPLSSLPKLRVLSLEGNP-VCEKKNYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp E-TTS---SCCCCGGGGG-TT--EEE-TT-G-GGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred ECcCCcCCChHHhHHHHcCCCcceeeccCCc-ccchhhHHHHHHHHcChhheeCCEEc
Confidence 88888877553 346678888888888884 33322 345778888888876543
No 31
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.12 E-value=2.2e-08 Score=110.67 Aligned_cols=293 Identities=14% Similarity=0.114 Sum_probs=165.0
Q ss_pred ccchHHHHHHHHHHhcc----CCCeEEEEEcCCCchHHHHHHHHHhhhccCCCCC---CeEEEEEeCCccCHHHHHHHHH
Q 002657 156 VVGLQSQLEQVWRCLVE----EPAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDF---DCVIWVVVSKDLRLENIQEIIG 228 (896)
Q Consensus 156 ~vGr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f---~~~~wv~~~~~~~~~~~~~~i~ 228 (896)
++||+.++++|..+|.. .....+.|+|++|+|||++++.+++...+..... -..+|+.+....+...++..|+
T Consensus 17 l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~i~ 96 (365)
T TIGR02928 17 IVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVELA 96 (365)
T ss_pred CCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHHHH
Confidence 89999999999999864 3456789999999999999999998762111111 2457778777777888999999
Q ss_pred HhcC---CCCccccccCHHHHHHHHHHHhC--CceEEEEEecCCCcc-c----ccccccc--CCCCCCCCcEEEEecCCH
Q 002657 229 GKIG---LMNESWKSKSLQEKSLDIFKILG--EKKFVLLLDDLWQRV-D----LTKVGVP--LPSPQSSASKVVFTTRSE 296 (896)
Q Consensus 229 ~~l~---~~~~~~~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~-~----~~~l~~~--~~~~~~~~s~iivTtR~~ 296 (896)
+++. .... ....+..+....+.+.+. +++++||||+++... . +..+... .....+....+|.+|...
T Consensus 97 ~~l~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n~~ 175 (365)
T TIGR02928 97 NQLRGSGEEVP-TTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGISNDL 175 (365)
T ss_pred HHHhhcCCCCC-CCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEECCc
Confidence 9883 2211 112234555566666663 568899999997541 1 1121111 010111233445555443
Q ss_pred HHHhhhc-------cCcceeccCCChHhHHHHHHHHhcCc--ccCCCCChHHHHHHHHHHhCCCchHH-HHHHHhh--c-
Q 002657 297 EICGLME-------AQKKFKVACLSDKDAWELFCHKVGEE--TLNNHPDIPELAQTVAKECGGMPLAL-ITIGRAM--S- 363 (896)
Q Consensus 297 ~v~~~~~-------~~~~~~l~~L~~~e~~~Lf~~~~~~~--~~~~~~~~~~~~~~i~~~~~GlPlai-~~~~~~l--~- 363 (896)
.....+. ....+.+.+++.++..+++..++... ....+++..+....++..+.|.|-.+ ..+-.+. +
T Consensus 176 ~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~~a~ 255 (365)
T TIGR02928 176 KFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGEIAE 255 (365)
T ss_pred chHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 3211111 12468899999999999999887421 11122333344555667777887544 3322211 1
Q ss_pred -C---CCCHHHHHHHHHHHhcccCCCCCCccchhhhHHhhhcCCCcchhhHHhhhhccC--CCCccccHHHHHHHHH--h
Q 002657 364 -C---KRTPQEWRHAIQVLRTTASEFPGLGNEVYPLLKFSYESLPNDIVRSCLLYCSLY--PEDYRISKENLIDCWI--G 435 (896)
Q Consensus 364 -~---~~~~~~w~~~l~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cfl~~~~f--p~~~~i~~~~li~~w~--a 435 (896)
. .-+.+..+.+.+.+. .....-++..||. +.|..+..++.. .++..+...++...+- +
T Consensus 256 ~~~~~~it~~~v~~a~~~~~-------------~~~~~~~i~~l~~-~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~~~ 321 (365)
T TIGR02928 256 REGAERVTEDHVEKAQEKIE-------------KDRLLELIRGLPT-HSKLVLLAIANLAANDEDPFRTGEVYEVYKEVC 321 (365)
T ss_pred HcCCCCCCHHHHHHHHHHHH-------------HHHHHHHHHcCCH-HHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHH
Confidence 1 124444444444332 1223446678888 556444433311 1334455555555321 1
Q ss_pred cCC-CCchhhhhHHHHHHHHHHHHHHhcccccc
Q 002657 436 ESF-LNERVKFEVQNQGYYILGILVHACLLEEV 467 (896)
Q Consensus 436 ~g~-i~~~~~~~~~~~~~~~l~~L~~~~ll~~~ 467 (896)
+.+ +.+ -.......++..|...+++...
T Consensus 322 ~~~~~~~----~~~~~~~~~l~~l~~~gli~~~ 350 (365)
T TIGR02928 322 EDIGVDP----LTQRRISDLLNELDMLGLVEAE 350 (365)
T ss_pred HhcCCCC----CcHHHHHHHHHHHHhcCCeEEE
Confidence 111 111 1234556677888888887753
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.12 E-value=5.2e-11 Score=113.25 Aligned_cols=142 Identities=30% Similarity=0.375 Sum_probs=54.8
Q ss_pred eecccccccccCCCCCCccEEecccccccccchhhhc-cCCCCcEEEccCCcccccccccccCCCCCCEEeccCCCcccc
Q 002657 521 LMQNRIKNLSEIPKCPHLLTLFLNSNELKIITNDFFQ-FMPSLKVLSLSRNRRLTNLQLGISKLVSLQHLDLSLTNIEKL 599 (896)
Q Consensus 521 l~~~~~~~l~~~~~~~~L~~L~l~~n~l~~i~~~~~~-~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~Ls~~~i~~l 599 (896)
+..+.+...+...++.+++.|+|.+|.++.|.. ++ .+.+|++|+|++| .++.++ .+..+++|++|++++|.|+.+
T Consensus 4 lt~~~i~~~~~~~n~~~~~~L~L~~n~I~~Ie~--L~~~l~~L~~L~Ls~N-~I~~l~-~l~~L~~L~~L~L~~N~I~~i 79 (175)
T PF14580_consen 4 LTANMIEQIAQYNNPVKLRELNLRGNQISTIEN--LGATLDKLEVLDLSNN-QITKLE-GLPGLPRLKTLDLSNNRISSI 79 (175)
T ss_dssp --------------------------------S----TT-TT--EEE-TTS---S--T-T----TT--EEE--SS---S-
T ss_pred ccccccccccccccccccccccccccccccccc--hhhhhcCCCEEECCCC-CCcccc-CccChhhhhhcccCCCCCCcc
Confidence 344566777778888899999999999888764 44 5889999999999 899887 788899999999999999999
Q ss_pred chhh-hcCCCCCEeeccccccccCCcH-HHHhccccccEEEeeccCCCcccccccccccccCccccHHHhcCCCCCcEEE
Q 002657 600 SGEL-KALVNLKCLNLEYTWSLVTIPQ-QLIASFLRLHVLRMFGVGDDAFEVASEDSVLFDGGEFLVEELLGLNHLEVLS 677 (896)
Q Consensus 600 p~~l-~~L~~L~~L~L~~~~~l~~lp~-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 677 (896)
+..+ ..+++|++|++++| .+..+.. ..++.+++|++|++.+|..... ...-..-+..+++|+.|+
T Consensus 80 ~~~l~~~lp~L~~L~L~~N-~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~------------~~YR~~vi~~lP~Lk~LD 146 (175)
T PF14580_consen 80 SEGLDKNLPNLQELYLSNN-KISDLNELEPLSSLPKLRVLSLEGNPVCEK------------KNYRLFVIYKLPSLKVLD 146 (175)
T ss_dssp CHHHHHH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGGGS------------TTHHHHHHHH-TT-SEET
T ss_pred ccchHHhCCcCCEEECcCC-cCCChHHhHHHHcCCCcceeeccCCcccch------------hhHHHHHHHHcChhheeC
Confidence 7666 47999999999999 5655432 1277899999999998865521 144555667778888876
Q ss_pred EE
Q 002657 678 LT 679 (896)
Q Consensus 678 l~ 679 (896)
-.
T Consensus 147 ~~ 148 (175)
T PF14580_consen 147 GQ 148 (175)
T ss_dssp TE
T ss_pred CE
Confidence 43
No 33
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.10 E-value=5.2e-11 Score=129.29 Aligned_cols=233 Identities=24% Similarity=0.197 Sum_probs=143.6
Q ss_pred ccceEEEeecccccc-----cc-cCCCCCCccEEecccccccccc------hhhhccCCCCcEEEccCCcccc-cccccc
Q 002657 514 ENVSRLSLMQNRIKN-----LS-EIPKCPHLLTLFLNSNELKIIT------NDFFQFMPSLKVLSLSRNRRLT-NLQLGI 580 (896)
Q Consensus 514 ~~lr~L~l~~~~~~~-----l~-~~~~~~~L~~L~l~~n~l~~i~------~~~~~~l~~L~~L~Ls~~~~i~-~lp~~i 580 (896)
.+++.|.+.++.+.. ++ .+...++|+.|+++++.+...+ ...+..+++|+.|++++| .+. ..+..+
T Consensus 23 ~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~~ 101 (319)
T cd00116 23 LCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDN-ALGPDGCGVL 101 (319)
T ss_pred hhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCC-CCChhHHHHH
Confidence 458888888887632 32 2567788999999988665211 234677899999999999 554 455555
Q ss_pred cCCCC---CCEEeccCCCcc-----ccchhhhcC-CCCCEeecccccccc-----CCcHHHHhccccccEEEeeccCCCc
Q 002657 581 SKLVS---LQHLDLSLTNIE-----KLSGELKAL-VNLKCLNLEYTWSLV-----TIPQQLIASFLRLHVLRMFGVGDDA 646 (896)
Q Consensus 581 ~~L~~---L~~L~Ls~~~i~-----~lp~~l~~L-~~L~~L~L~~~~~l~-----~lp~~~i~~l~~L~~L~l~~~~~~~ 646 (896)
..+.+ |++|++++|.+. .+...+..+ ++|+.|++++| .+. .++. .+..+++|++|++.+|....
T Consensus 102 ~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~~~~-~~~~~~~L~~L~l~~n~l~~ 179 (319)
T cd00116 102 ESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRN-RLEGASCEALAK-ALRANRDLKELNLANNGIGD 179 (319)
T ss_pred HHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCC-cCCchHHHHHHH-HHHhCCCcCEEECcCCCCch
Confidence 55555 999999999876 234456677 89999999999 444 2232 26677889999999876552
Q ss_pred ccccccccccccCccccHHHhcCCCCCcEEEEEecCchhhhhhhccccccccceeeeeeecCCCCeeeeccccccCCcCe
Q 002657 647 FEVASEDSVLFDGGEFLVEELLGLNHLEVLSLTLRSPYALQSFLTSHKLQCCTQALFLQYFKDSTSLVVSSLANLKRLNV 726 (896)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~ 726 (896)
.. .......+..+++|+.|+++.+.......- . ....+..+++|++
T Consensus 180 ~~-----------~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~----------------------~-l~~~~~~~~~L~~ 225 (319)
T cd00116 180 AG-----------IRALAEGLKANCNLEVLDLNNNGLTDEGAS----------------------A-LAETLASLKSLEV 225 (319)
T ss_pred HH-----------HHHHHHHHHhCCCCCEEeccCCccChHHHH----------------------H-HHHHhcccCCCCE
Confidence 00 022334556667888888886654321100 0 0022445678888
Q ss_pred EeeccCCCCceEEecCCCccccccCCCccEEEeccCCCCCC-----C-ccccCCCCCCEEeEecC
Q 002657 727 LRIADCEKLEELKIDYTGEIQHFGFRSLCKVEIARCQKLKD-----L-TFLVFAPNLESIEVKSC 785 (896)
Q Consensus 727 L~L~~~~~l~~l~~~~~~~~~~~~~~~L~~L~L~~c~~l~~-----l-~~l~~l~~L~~L~L~~c 785 (896)
|++++|. +.+..............++|++|++++| .+++ + ..+..+++|++|++++|
T Consensus 226 L~ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~l~~n-~i~~~~~~~l~~~~~~~~~L~~l~l~~N 288 (319)
T cd00116 226 LNLGDNN-LTDAGAAALASALLSPNISLLTLSLSCN-DITDDGAKDLAEVLAEKESLLELDLRGN 288 (319)
T ss_pred EecCCCc-CchHHHHHHHHHHhccCCCceEEEccCC-CCCcHHHHHHHHHHhcCCCccEEECCCC
Confidence 8888764 2211110000000002367888888877 4432 1 12344567777777774
No 34
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.04 E-value=1.6e-08 Score=108.68 Aligned_cols=263 Identities=16% Similarity=0.135 Sum_probs=149.3
Q ss_pred ccchHHHHHHHHHHhcc-----CCCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHh
Q 002657 156 VVGLQSQLEQVWRCLVE-----EPAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDLRLENIQEIIGGK 230 (896)
Q Consensus 156 ~vGr~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 230 (896)
|+|+++.+++|..++.. .....+.++|++|+|||+||+.+++.. . ..+ ..+..+.......+ ...+..
T Consensus 6 ~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~-~--~~~---~~~~~~~~~~~~~l-~~~l~~ 78 (305)
T TIGR00635 6 FIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEM-G--VNL---KITSGPALEKPGDL-AAILTN 78 (305)
T ss_pred HcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHh-C--CCE---EEeccchhcCchhH-HHHHHh
Confidence 89999999999888863 345678899999999999999999886 2 222 12222111122222 222233
Q ss_pred cCCCC----ccccccCHHHHHHHHHHHhCCceEEEEEecCCCccccccccccCCCCCCCCcEEEEecCCHHHHhhh--cc
Q 002657 231 IGLMN----ESWKSKSLQEKSLDIFKILGEKKFVLLLDDLWQRVDLTKVGVPLPSPQSSASKVVFTTRSEEICGLM--EA 304 (896)
Q Consensus 231 l~~~~----~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~~~s~iivTtR~~~v~~~~--~~ 304 (896)
++... +.....+ ......+...+.+.+..+|+++..+...+.. .++ +.+-|..||+...+.... ..
T Consensus 79 ~~~~~vl~iDEi~~l~-~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~---~~~----~~~li~~t~~~~~l~~~l~sR~ 150 (305)
T TIGR00635 79 LEEGDVLFIDEIHRLS-PAVEELLYPAMEDFRLDIVIGKGPSARSVRL---DLP----PFTLVGATTRAGMLTSPLRDRF 150 (305)
T ss_pred cccCCEEEEehHhhhC-HHHHHHhhHHHhhhheeeeeccCccccceee---cCC----CeEEEEecCCccccCHHHHhhc
Confidence 32211 0001111 1223446666666677777777655444432 122 245566677765432211 12
Q ss_pred CcceeccCCChHhHHHHHHHHhcCcccCCCCChHHHHHHHHHHhCCCchHHHHHHHhhc------CC--CCHHHHHHHHH
Q 002657 305 QKKFKVACLSDKDAWELFCHKVGEETLNNHPDIPELAQTVAKECGGMPLALITIGRAMS------CK--RTPQEWRHAIQ 376 (896)
Q Consensus 305 ~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~~~~l~------~~--~~~~~w~~~l~ 376 (896)
...+++++++.++..+++.+.+...... --.+....|++.|+|.|-.+..++..+. +. -+.+..+
T Consensus 151 ~~~~~l~~l~~~e~~~il~~~~~~~~~~---~~~~al~~ia~~~~G~pR~~~~ll~~~~~~a~~~~~~~it~~~v~---- 223 (305)
T TIGR00635 151 GIILRLEFYTVEELAEIVSRSAGLLNVE---IEPEAALEIARRSRGTPRIANRLLRRVRDFAQVRGQKIINRDIAL---- 223 (305)
T ss_pred ceEEEeCCCCHHHHHHHHHHHHHHhCCC---cCHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHcCCCCcCHHHHH----
Confidence 3467999999999999999988644321 2246678999999999977655554321 00 1111111
Q ss_pred HHhcccCCCCCCccchhhhHHhhhcCCCcchhhHHhh-hhccCCCCccccHHHHHHHHHhcCCCCchhhhhHHHHHHHHH
Q 002657 377 VLRTTASEFPGLGNEVYPLLKFSYESLPNDIVRSCLL-YCSLYPEDYRISKENLIDCWIGESFLNERVKFEVQNQGYYIL 455 (896)
Q Consensus 377 ~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cfl-~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~l 455 (896)
.....+...|..++. +.+..+. ..+.++.+ .+..+.+.... | .....++..+
T Consensus 224 --------------~~l~~l~~~~~~l~~-~~~~~L~al~~~~~~~-~~~~~~ia~~l---g--------~~~~~~~~~~ 276 (305)
T TIGR00635 224 --------------KALEMLMIDELGLDE-IDRKLLSVLIEQFQGG-PVGLKTLAAAL---G--------EDADTIEDVY 276 (305)
T ss_pred --------------HHHHHhCCCCCCCCH-HHHHHHHHHHHHhCCC-cccHHHHHHHh---C--------CCcchHHHhh
Confidence 122224556777887 5555554 44556543 34433333211 1 1123455567
Q ss_pred H-HHHHhcccccc
Q 002657 456 G-ILVHACLLEEV 467 (896)
Q Consensus 456 ~-~L~~~~ll~~~ 467 (896)
+ .|++++|+...
T Consensus 277 e~~Li~~~li~~~ 289 (305)
T TIGR00635 277 EPYLLQIGFLQRT 289 (305)
T ss_pred hHHHHHcCCcccC
Confidence 7 69999999765
No 35
>PF05729 NACHT: NACHT domain
Probab=98.96 E-value=3.7e-09 Score=102.49 Aligned_cols=142 Identities=15% Similarity=0.254 Sum_probs=90.2
Q ss_pred eEEEEEcCCCchHHHHHHHHHhhhccCCCC----CCeEEEEEeCCccCHH---HHHHHHHHhcCCCCccccccCHHHHHH
Q 002657 176 GIVGLYGMGGVGKTTLLTHINNKFLQVPND----FDCVIWVVVSKDLRLE---NIQEIIGGKIGLMNESWKSKSLQEKSL 248 (896)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~----f~~~~wv~~~~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~~~ 248 (896)
|++.|+|.+|+||||+++.++.... .... +..++|+......... .+...|..+..... .....
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-----~~~~~--- 71 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLA-EEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESI-----APIEE--- 71 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHH-hcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccch-----hhhHH---
Confidence 5899999999999999999998873 2222 4567777766544322 34444444433211 11111
Q ss_pred HHHHH-hCCceEEEEEecCCCccc---------cccc-cccCCCCCCCCcEEEEecCCHHH---HhhhccCcceeccCCC
Q 002657 249 DIFKI-LGEKKFVLLLDDLWQRVD---------LTKV-GVPLPSPQSSASKVVFTTRSEEI---CGLMEAQKKFKVACLS 314 (896)
Q Consensus 249 ~l~~~-l~~kr~LlVlDdv~~~~~---------~~~l-~~~~~~~~~~~s~iivTtR~~~v---~~~~~~~~~~~l~~L~ 314 (896)
.+... -+.+++++|+|++++... +..+ ...++.....+.+++||+|.... .........+.+.+|+
T Consensus 72 ~~~~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~ 151 (166)
T PF05729_consen 72 LLQELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFS 151 (166)
T ss_pred HHHHHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCC
Confidence 22222 257899999999965322 1122 22222123568999999998766 3333344679999999
Q ss_pred hHhHHHHHHHHh
Q 002657 315 DKDAWELFCHKV 326 (896)
Q Consensus 315 ~~e~~~Lf~~~~ 326 (896)
+++..+++.+.+
T Consensus 152 ~~~~~~~~~~~f 163 (166)
T PF05729_consen 152 EEDIKQYLRKYF 163 (166)
T ss_pred HHHHHHHHHHHh
Confidence 999999998765
No 36
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.95 E-value=1.5e-07 Score=101.60 Aligned_cols=271 Identities=13% Similarity=0.114 Sum_probs=146.9
Q ss_pred ccchHHHHHHHHHHhcc-----CCCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHh
Q 002657 156 VVGLQSQLEQVWRCLVE-----EPAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDLRLENIQEIIGGK 230 (896)
Q Consensus 156 ~vGr~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 230 (896)
|+|+++.++.+..++.. ...+.+.|+|++|+||||+|+.+++.. . ..+ .++.... ......+..++..
T Consensus 27 ~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l-~--~~~---~~~~~~~-~~~~~~l~~~l~~ 99 (328)
T PRK00080 27 FIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEM-G--VNI---RITSGPA-LEKPGDLAAILTN 99 (328)
T ss_pred hcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHh-C--CCe---EEEeccc-ccChHHHHHHHHh
Confidence 89999999998877752 345678899999999999999999987 2 222 1222111 1111222333333
Q ss_pred cCCCC----ccccccCHHHHHHHHHHHhCCceEEEEEecCCCccccccccccCCCCCCCCcEEEEecCCHHHHhhhc--c
Q 002657 231 IGLMN----ESWKSKSLQEKSLDIFKILGEKKFVLLLDDLWQRVDLTKVGVPLPSPQSSASKVVFTTRSEEICGLME--A 304 (896)
Q Consensus 231 l~~~~----~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~~~s~iivTtR~~~v~~~~~--~ 304 (896)
+.... +.....+ ......+...+.+.+..+|+|+..+...+. ..++ ..+-|..||+...+..... .
T Consensus 100 l~~~~vl~IDEi~~l~-~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~---~~l~----~~~li~at~~~~~l~~~L~sRf 171 (328)
T PRK00080 100 LEEGDVLFIDEIHRLS-PVVEEILYPAMEDFRLDIMIGKGPAARSIR---LDLP----PFTLIGATTRAGLLTSPLRDRF 171 (328)
T ss_pred cccCCEEEEecHhhcc-hHHHHHHHHHHHhcceeeeeccCcccccee---ecCC----CceEEeecCCcccCCHHHHHhc
Confidence 32111 0000000 112233445555566666666654332221 1111 2345666777543322111 2
Q ss_pred CcceeccCCChHhHHHHHHHHhcCcccCCCCChHHHHHHHHHHhCCCchHHHHHHHhhcCCCCHHHHHHHHHHHhcccCC
Q 002657 305 QKKFKVACLSDKDAWELFCHKVGEETLNNHPDIPELAQTVAKECGGMPLALITIGRAMSCKRTPQEWRHAIQVLRTTASE 384 (896)
Q Consensus 305 ~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~~~~l~~~~~~~~w~~~l~~l~~~~~~ 384 (896)
...+++++++.++..+++.+.+....... -.+....|++.|+|.|-.+..+...+. .|.... ....-.
T Consensus 172 ~~~~~l~~~~~~e~~~il~~~~~~~~~~~---~~~~~~~ia~~~~G~pR~a~~~l~~~~------~~a~~~---~~~~I~ 239 (328)
T PRK00080 172 GIVQRLEFYTVEELEKIVKRSARILGVEI---DEEGALEIARRSRGTPRIANRLLRRVR------DFAQVK---GDGVIT 239 (328)
T ss_pred CeeeecCCCCHHHHHHHHHHHHHHcCCCc---CHHHHHHHHHHcCCCchHHHHHHHHHH------HHHHHc---CCCCCC
Confidence 35689999999999999999887544222 246689999999999976655544321 111100 000000
Q ss_pred CCCCccchhhhHHhhhcCCCcchhhHHhh-hhccCCCCccccHHHHHHHHHhcCCCCchhhhhHHHHHHHHHH-HHHHhc
Q 002657 385 FPGLGNEVYPLLKFSYESLPNDIVRSCLL-YCSLYPEDYRISKENLIDCWIGESFLNERVKFEVQNQGYYILG-ILVHAC 462 (896)
Q Consensus 385 ~~~~~~~~~~~l~~sy~~L~~~~~k~cfl-~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~l~-~L~~~~ 462 (896)
...-......+...|..|++ ..+..+. ....|+.+ .+..+.+.... | ...+.++..++ .|++.+
T Consensus 240 -~~~v~~~l~~~~~~~~~l~~-~~~~~l~~~~~~~~~~-~~~~~~~a~~l---g--------~~~~~~~~~~e~~Li~~~ 305 (328)
T PRK00080 240 -KEIADKALDMLGVDELGLDE-MDRKYLRTIIEKFGGG-PVGLDTLAAAL---G--------EERDTIEDVYEPYLIQQG 305 (328)
T ss_pred -HHHHHHHHHHhCCCcCCCCH-HHHHHHHHHHHHcCCC-ceeHHHHHHHH---C--------CCcchHHHHhhHHHHHcC
Confidence 00001233445566777877 4555553 56667655 45554443321 1 11233444456 889999
Q ss_pred ccccc
Q 002657 463 LLEEV 467 (896)
Q Consensus 463 ll~~~ 467 (896)
|++..
T Consensus 306 li~~~ 310 (328)
T PRK00080 306 FIQRT 310 (328)
T ss_pred CcccC
Confidence 98765
No 37
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.95 E-value=1.5e-08 Score=121.37 Aligned_cols=307 Identities=18% Similarity=0.211 Sum_probs=177.0
Q ss_pred ccchHHHHHHHHHHhcc---CCCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCccC---HHHHHHHHHH
Q 002657 156 VVGLQSQLEQVWRCLVE---EPAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDLR---LENIQEIIGG 229 (896)
Q Consensus 156 ~vGr~~~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~---~~~~~~~i~~ 229 (896)
++||+.+++.|...+.. +...|+.|.|.+|||||+++++|.....+.++.|-...+-....+.. ..+.+++++.
T Consensus 2 l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~l~~ 81 (849)
T COG3899 2 LYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQFERNIPLSPLVQAFRDLMG 81 (849)
T ss_pred CCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcccccCCCchHHHHHHHHHHHH
Confidence 78999999999998865 56779999999999999999999988733222221111111111111 2223333333
Q ss_pred hc-------------------CCCCcc--------------------ccccCHHHHH-----HHHHHHh-CCceEEEEEe
Q 002657 230 KI-------------------GLMNES--------------------WKSKSLQEKS-----LDIFKIL-GEKKFVLLLD 264 (896)
Q Consensus 230 ~l-------------------~~~~~~--------------------~~~~~~~~~~-----~~l~~~l-~~kr~LlVlD 264 (896)
++ +..... ......+.+. ..+..+. +.++.++|+|
T Consensus 82 ~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi~le 161 (849)
T COG3899 82 QLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVIVLE 161 (849)
T ss_pred HHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEEEEe
Confidence 22 211100 0011111111 1222333 3569999999
Q ss_pred cC-CCccc-cccccccCCCCCC----CCcEEE--EecCCH--HHHhhhccCcceeccCCChHhHHHHHHHHhcCcccCCC
Q 002657 265 DL-WQRVD-LTKVGVPLPSPQS----SASKVV--FTTRSE--EICGLMEAQKKFKVACLSDKDAWELFCHKVGEETLNNH 334 (896)
Q Consensus 265 dv-~~~~~-~~~l~~~~~~~~~----~~s~ii--vTtR~~--~v~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~ 334 (896)
|+ |-+.. +.-+..... ... ....|. .|.+.. .+.........|.+.||+..+...+.....+...
T Consensus 162 DlhWaD~~SL~lL~~lm~-~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~---- 236 (849)
T COG3899 162 DLHWADSASLKLLQLLMD-RIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTK---- 236 (849)
T ss_pred cccccChhHHHHHHHHHH-hcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCcc----
Confidence 99 64322 221111111 000 011222 233322 2222223456899999999999999999887533
Q ss_pred CChHHHHHHHHHHhCCCchHHHHHHHhhcCC------CCHHHHHHHHHHHhcccCCCCCCccchhhhHHhhhcCCCcchh
Q 002657 335 PDIPELAQTVAKECGGMPLALITIGRAMSCK------RTPQEWRHAIQVLRTTASEFPGLGNEVYPLLKFSYESLPNDIV 408 (896)
Q Consensus 335 ~~~~~~~~~i~~~~~GlPlai~~~~~~l~~~------~~~~~w~~~l~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~ 408 (896)
....+....|+++..|+|+.+..+-..+... .+...|..-...+... +.. +.+...+..-.+.||. ..
T Consensus 237 ~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~~----~~~-~~vv~~l~~rl~kL~~-~t 310 (849)
T COG3899 237 LLPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGIL----ATT-DAVVEFLAARLQKLPG-TT 310 (849)
T ss_pred cccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCCc----hhh-HHHHHHHHHHHhcCCH-HH
Confidence 2335678999999999999999988887763 3445555433222221 111 2466678899999999 89
Q ss_pred hHHhhhhccCCCCccccHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHHHhcccccc-------CCc---cchhhHHH
Q 002657 409 RSCLLYCSLYPEDYRISKENLIDCWIGESFLNERVKFEVQNQGYYILGILVHACLLEEV-------GED---EVKMHDVI 478 (896)
Q Consensus 409 k~cfl~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~l~~L~~~~ll~~~-------~~~---~~~mHdlv 478 (896)
+..+-..|++... |+.+.|...|-. .....+....+.|....++-.. ... +-..||.|
T Consensus 311 ~~Vl~~AA~iG~~--F~l~~La~l~~~----------~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~v 378 (849)
T COG3899 311 REVLKAAACIGNR--FDLDTLAALAED----------SPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHDRV 378 (849)
T ss_pred HHHHHHHHHhCcc--CCHHHHHHHHhh----------chHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHHHH
Confidence 9999999998754 445555554421 2233444445555554444311 112 23689999
Q ss_pred HhHHHhh
Q 002657 479 RDMALWI 485 (896)
Q Consensus 479 ~d~a~~~ 485 (896)
++.|-..
T Consensus 379 qqaaY~~ 385 (849)
T COG3899 379 QQAAYNL 385 (849)
T ss_pred HHHHhcc
Confidence 8887543
No 38
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.93 E-value=4.2e-11 Score=127.65 Aligned_cols=168 Identities=25% Similarity=0.247 Sum_probs=115.2
Q ss_pred cceEEEeeccccccccc-CCCCCCccEEecccccccccchhhhccCCCCcEEEccCCcccccccccccCCCCCCEEeccC
Q 002657 515 NVSRLSLMQNRIKNLSE-IPKCPHLLTLFLNSNELKIITNDFFQFMPSLKVLSLSRNRRLTNLQLGISKLVSLQHLDLSL 593 (896)
Q Consensus 515 ~lr~L~l~~~~~~~l~~-~~~~~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~Ls~ 593 (896)
.....+++.|++..+|. ...|..|..|.+..|.+..||.. ++++..|.+|||+.| .+..+|..++.|+ |+.|-+++
T Consensus 76 dt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~-i~~L~~lt~l~ls~N-qlS~lp~~lC~lp-Lkvli~sN 152 (722)
T KOG0532|consen 76 DTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEA-ICNLEALTFLDLSSN-QLSHLPDGLCDLP-LKVLIVSN 152 (722)
T ss_pred chhhhhccccccccCchHHHHHHHHHHHHHHhccceecchh-hhhhhHHHHhhhccc-hhhcCChhhhcCc-ceeEEEec
Confidence 34456677777777654 56677777777777777777765 677778888888888 7777787777776 77788888
Q ss_pred CCccccchhhhcCCCCCEeeccccccccCCcHHHHhccccccEEEeeccCCCcccccccccccccCccccHHHhcCCCCC
Q 002657 594 TNIEKLSGELKALVNLKCLNLEYTWSLVTIPQQLIASFLRLHVLRMFGVGDDAFEVASEDSVLFDGGEFLVEELLGLNHL 673 (896)
Q Consensus 594 ~~i~~lp~~l~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L 673 (896)
|+++.+|..++.+..|.+||.+.| .+..+|.. ++.+.+|+.|.+..|... ..++++..|+ |
T Consensus 153 Nkl~~lp~~ig~~~tl~~ld~s~n-ei~slpsq-l~~l~slr~l~vrRn~l~----------------~lp~El~~Lp-L 213 (722)
T KOG0532|consen 153 NKLTSLPEEIGLLPTLAHLDVSKN-EIQSLPSQ-LGYLTSLRDLNVRRNHLE----------------DLPEELCSLP-L 213 (722)
T ss_pred CccccCCcccccchhHHHhhhhhh-hhhhchHH-hhhHHHHHHHHHhhhhhh----------------hCCHHHhCCc-e
Confidence 888888877877777888888777 56777766 777777777777765443 4556666554 6
Q ss_pred cEEEEEecCchhhhhhhccccccccceeeeeeec
Q 002657 674 EVLSLTLRSPYALQSFLTSHKLQCCTQALFLQYF 707 (896)
Q Consensus 674 ~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~ 707 (896)
..|++++|.+..++.-+. .++.|+.|.|.++
T Consensus 214 i~lDfScNkis~iPv~fr---~m~~Lq~l~LenN 244 (722)
T KOG0532|consen 214 IRLDFSCNKISYLPVDFR---KMRHLQVLQLENN 244 (722)
T ss_pred eeeecccCceeecchhhh---hhhhheeeeeccC
Confidence 677777666555443222 1345555555543
No 39
>PRK06893 DNA replication initiation factor; Validated
Probab=98.83 E-value=2e-08 Score=102.11 Aligned_cols=152 Identities=14% Similarity=0.194 Sum_probs=95.3
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHH
Q 002657 174 PAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDLRLENIQEIIGGKIGLMNESWKSKSLQEKSLDIFKI 253 (896)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 253 (896)
..+.+.++|++|+|||+|++.+++... .....+.|+.+... ..... .+.+.
T Consensus 38 ~~~~l~l~G~~G~GKThL~~ai~~~~~---~~~~~~~y~~~~~~---~~~~~-----------------------~~~~~ 88 (229)
T PRK06893 38 QQPFFYIWGGKSSGKSHLLKAVSNHYL---LNQRTAIYIPLSKS---QYFSP-----------------------AVLEN 88 (229)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCCeEEeeHHHh---hhhhH-----------------------HHHhh
Confidence 446789999999999999999999862 22334567665311 00000 11111
Q ss_pred hCCceEEEEEecCCCc---ccccc-ccccCCCCCCCCcEEE-EecCC---------HHHHhhhccCcceeccCCChHhHH
Q 002657 254 LGEKKFVLLLDDLWQR---VDLTK-VGVPLPSPQSSASKVV-FTTRS---------EEICGLMEAQKKFKVACLSDKDAW 319 (896)
Q Consensus 254 l~~kr~LlVlDdv~~~---~~~~~-l~~~~~~~~~~~s~ii-vTtR~---------~~v~~~~~~~~~~~l~~L~~~e~~ 319 (896)
++ +.-+|||||+|.. ..|+. +...+......|..+| +|++. +++.+.+.....++++++++++.+
T Consensus 89 ~~-~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~ 167 (229)
T PRK06893 89 LE-QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKI 167 (229)
T ss_pred cc-cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHH
Confidence 22 2348999999853 34442 2222221122355554 55554 456666667788999999999999
Q ss_pred HHHHHHhcCcccCCCCChHHHHHHHHHHhCCCchHHHHH
Q 002657 320 ELFCHKVGEETLNNHPDIPELAQTVAKECGGMPLALITI 358 (896)
Q Consensus 320 ~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~ 358 (896)
+++.+.+....... -+++..-|++.+.|..-++..+
T Consensus 168 ~iL~~~a~~~~l~l---~~~v~~~L~~~~~~d~r~l~~~ 203 (229)
T PRK06893 168 IVLQRNAYQRGIEL---SDEVANFLLKRLDRDMHTLFDA 203 (229)
T ss_pred HHHHHHHHHcCCCC---CHHHHHHHHHhccCCHHHHHHH
Confidence 99999886543222 2567888999988776655443
No 40
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.81 E-value=8.1e-10 Score=108.60 Aligned_cols=133 Identities=27% Similarity=0.270 Sum_probs=90.7
Q ss_pred CCCCCccEEecccccccccchhhhccCCCCcEEEccCCcccccccccccCCCCCCEEeccCCCccccchhhhcCCCCCEe
Q 002657 533 PKCPHLLTLFLNSNELKIITNDFFQFMPSLKVLSLSRNRRLTNLQLGISKLVSLQHLDLSLTNIEKLSGELKALVNLKCL 612 (896)
Q Consensus 533 ~~~~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~Ls~~~i~~lp~~l~~L~~L~~L 612 (896)
.....|..|+|++|.++.+..+ .+-.+.+|+|++|+| .+..+- ++..|++|+.||||+|.+.++-..-.+|-|.++|
T Consensus 281 dTWq~LtelDLS~N~I~~iDES-vKL~Pkir~L~lS~N-~i~~v~-nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL 357 (490)
T KOG1259|consen 281 DTWQELTELDLSGNLITQIDES-VKLAPKLRRLILSQN-RIRTVQ-NLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTL 357 (490)
T ss_pred chHhhhhhccccccchhhhhhh-hhhccceeEEecccc-ceeeeh-hhhhcccceEeecccchhHhhhhhHhhhcCEeee
Confidence 3345677777777777777665 566677778888777 666655 3677777778888877777776555677777777
Q ss_pred eccccccccCCcHHHHhccccccEEEeeccCCCcccccccccccccCccccHHHhcCCCCCcEEEEEecCchh
Q 002657 613 NLEYTWSLVTIPQQLIASFLRLHVLRMFGVGDDAFEVASEDSVLFDGGEFLVEELLGLNHLEVLSLTLRSPYA 685 (896)
Q Consensus 613 ~L~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 685 (896)
.|++| .++.+.. +++|-+|..|++.+|.+.. ......+++++.|+.+.+.+|....
T Consensus 358 ~La~N-~iE~LSG--L~KLYSLvnLDl~~N~Ie~--------------ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 358 KLAQN-KIETLSG--LRKLYSLVNLDLSSNQIEE--------------LDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred ehhhh-hHhhhhh--hHhhhhheeccccccchhh--------------HHHhcccccccHHHHHhhcCCCccc
Confidence 77777 5666654 6777777777777665542 2334456677777777776665443
No 41
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.79 E-value=2.7e-10 Score=117.43 Aligned_cols=292 Identities=17% Similarity=0.164 Sum_probs=160.4
Q ss_pred CCccEEeccccccc-ccc-hhhhccCCCCcEEEccCCcccccc--cccccCCCCCCEEeccCC-Ccccc--chhhhcCCC
Q 002657 536 PHLLTLFLNSNELK-IIT-NDFFQFMPSLKVLSLSRNRRLTNL--QLGISKLVSLQHLDLSLT-NIEKL--SGELKALVN 608 (896)
Q Consensus 536 ~~L~~L~l~~n~l~-~i~-~~~~~~l~~L~~L~Ls~~~~i~~l--p~~i~~L~~L~~L~Ls~~-~i~~l--p~~l~~L~~ 608 (896)
..|+.|.+.++.-. .-+ ..+-.++++++.|++.+|..+++- -+.-..+++|++|+|..| .++.. -.-...+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 46888889888321 111 234567899999999999655532 222345788999998885 55532 223457889
Q ss_pred CCEeeccccccccC--CcHHHHhccccccEEEeeccCCCcccccccccccccCccccHHHh-cCCCCCcEEEEEecCchh
Q 002657 609 LKCLNLEYTWSLVT--IPQQLIASFLRLHVLRMFGVGDDAFEVASEDSVLFDGGEFLVEEL-LGLNHLEVLSLTLRSPYA 685 (896)
Q Consensus 609 L~~L~L~~~~~l~~--lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~ 685 (896)
|++|++++|..+.. +-. ...++.+|+.+...+|.... ...+... ..+.-+.++++..+...+
T Consensus 218 L~~lNlSwc~qi~~~gv~~-~~rG~~~l~~~~~kGC~e~~--------------le~l~~~~~~~~~i~~lnl~~c~~lT 282 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQA-LQRGCKELEKLSLKGCLELE--------------LEALLKAAAYCLEILKLNLQHCNQLT 282 (483)
T ss_pred HHHhhhccCchhhcCcchH-Hhccchhhhhhhhccccccc--------------HHHHHHHhccChHhhccchhhhcccc
Confidence 99999999865543 111 24566666666555553321 1111111 111222233322222211
Q ss_pred hhhhhccccccccceeeeeeecCCCCeeeecccc-ccCCcCeEeeccCCCCceEEecCCCccccccCCCccEEEeccCCC
Q 002657 686 LQSFLTSHKLQCCTQALFLQYFKDSTSLVVSSLA-NLKRLNVLRIADCEKLEELKIDYTGEIQHFGFRSLCKVEIARCQK 764 (896)
Q Consensus 686 ~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~-~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~L~~L~L~~c~~ 764 (896)
-..+.........++.|...++...+..++..++ +.++|+.|.+.+|..+.+......+ .+++.|+.+++.+|..
T Consensus 283 D~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~----rn~~~Le~l~~e~~~~ 358 (483)
T KOG4341|consen 283 DEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLG----RNCPHLERLDLEECGL 358 (483)
T ss_pred chHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhh----cCChhhhhhcccccce
Confidence 1222222223345666666666665554443333 4577778877777765543222222 3577777777777754
Q ss_pred CCCC--cc-ccCCCCCCEEeEecCcccchhcccCcccCCCCCcCccccEeeccCCCcccccCCC-CCCCCCccEEeEcCC
Q 002657 765 LKDL--TF-LVFAPNLESIEVKSCLALEEIVSDVPEAMGNLNLFAKLQYLELLGLPNLKSIYWK-PLSFPRLKEMTIITC 840 (896)
Q Consensus 765 l~~l--~~-l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~-~~~~~~L~~L~i~~C 840 (896)
..+- .. -.++|.|+.|.++.|..+++..... ......+...|+.|.+++||.+..-..+ ...+++|+.+++.+|
T Consensus 359 ~~d~tL~sls~~C~~lr~lslshce~itD~gi~~--l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~ 436 (483)
T KOG4341|consen 359 ITDGTLASLSRNCPRLRVLSLSHCELITDEGIRH--LSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDC 436 (483)
T ss_pred ehhhhHhhhccCCchhccCChhhhhhhhhhhhhh--hhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeech
Confidence 4442 11 2356778888887777666641100 0012234566777777777765543322 234667777777777
Q ss_pred cCCCCCCC
Q 002657 841 NKLKKLPV 848 (896)
Q Consensus 841 ~~L~~lp~ 848 (896)
....+=|.
T Consensus 437 q~vtk~~i 444 (483)
T KOG4341|consen 437 QDVTKEAI 444 (483)
T ss_pred hhhhhhhh
Confidence 66665443
No 42
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=1.6e-09 Score=112.49 Aligned_cols=208 Identities=20% Similarity=0.187 Sum_probs=121.6
Q ss_pred CCCCCCccEEecccccccccch-hhhccCCCCcEEEccCCcccccc---cccccCCCCCCEEeccCCCccccchh--hhc
Q 002657 532 IPKCPHLLTLFLNSNELKIITN-DFFQFMPSLKVLSLSRNRRLTNL---QLGISKLVSLQHLDLSLTNIEKLSGE--LKA 605 (896)
Q Consensus 532 ~~~~~~L~~L~l~~n~l~~i~~-~~~~~l~~L~~L~Ls~~~~i~~l---p~~i~~L~~L~~L~Ls~~~i~~lp~~--l~~ 605 (896)
-+++++|+...|.++.+..++. .....|++++.||||+| -+... -.-...|++|+.|+|+.|++.....+ -..
T Consensus 117 Qsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~N-L~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~ 195 (505)
T KOG3207|consen 117 QSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRN-LFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLL 195 (505)
T ss_pred hhhHHhhhheeecCccccccchhhhhhhCCcceeecchhh-hHHhHHHHHHHHHhcccchhcccccccccCCccccchhh
Confidence 3678889999999987765553 34678999999999998 55542 33456788999999999877644322 235
Q ss_pred CCCCCEeeccccccccCCc-HHHHhccccccEEEeeccCCCcccccccccccccCccccHHHhcCCCCCcEEEEEecCch
Q 002657 606 LVNLKCLNLEYTWSLVTIP-QQLIASFLRLHVLRMFGVGDDAFEVASEDSVLFDGGEFLVEELLGLNHLEVLSLTLRSPY 684 (896)
Q Consensus 606 L~~L~~L~L~~~~~l~~lp-~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 684 (896)
+..|+.|.|+.| .+..-. ......+++|+.|++..|.... .....-.-+..|+.|+|+.+...
T Consensus 196 l~~lK~L~l~~C-Gls~k~V~~~~~~fPsl~~L~L~~N~~~~---------------~~~~~~~i~~~L~~LdLs~N~li 259 (505)
T KOG3207|consen 196 LSHLKQLVLNSC-GLSWKDVQWILLTFPSLEVLYLEANEIIL---------------IKATSTKILQTLQELDLSNNNLI 259 (505)
T ss_pred hhhhheEEeccC-CCCHHHHHHHHHhCCcHHHhhhhcccccc---------------eecchhhhhhHHhhccccCCccc
Confidence 677888888888 443211 1234567788888887664211 00111122334555555544432
Q ss_pred hhhhhhccccccccceeeeeeecCCCCeeeeccccccCCcCeEeeccCCCCceEE-ecCCCccccccCCCccEEEeccCC
Q 002657 685 ALQSFLTSHKLQCCTQALFLQYFKDSTSLVVSSLANLKRLNVLRIADCEKLEELK-IDYTGEIQHFGFRSLCKVEIARCQ 763 (896)
Q Consensus 685 ~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~l~-~~~~~~~~~~~~~~L~~L~L~~c~ 763 (896)
. .........++.|..|+++.| ++.++. ++.........|++|+.|++..+
T Consensus 260 ~--------------------------~~~~~~~~~l~~L~~Lnls~t-gi~si~~~d~~s~~kt~~f~kL~~L~i~~N- 311 (505)
T KOG3207|consen 260 D--------------------------FDQGYKVGTLPGLNQLNLSST-GIASIAEPDVESLDKTHTFPKLEYLNISEN- 311 (505)
T ss_pred c--------------------------cccccccccccchhhhhcccc-CcchhcCCCccchhhhcccccceeeecccC-
Confidence 2 222233555677777777765 333221 11100011235788888888877
Q ss_pred CCCCCcc---ccCCCCCCEEeEec
Q 002657 764 KLKDLTF---LVFAPNLESIEVKS 784 (896)
Q Consensus 764 ~l~~l~~---l~~l~~L~~L~L~~ 784 (896)
.+.+++. +..+++|+.|.+..
T Consensus 312 ~I~~w~sl~~l~~l~nlk~l~~~~ 335 (505)
T KOG3207|consen 312 NIRDWRSLNHLRTLENLKHLRITL 335 (505)
T ss_pred ccccccccchhhccchhhhhhccc
Confidence 4444443 34556677776554
No 43
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=1.3e-09 Score=113.08 Aligned_cols=210 Identities=20% Similarity=0.167 Sum_probs=122.5
Q ss_pred cccCCCCCCEEeccCCCccccch--hhhcCCCCCEeeccccccccCCc--HHHHhccccccEEEeeccCCCccccccccc
Q 002657 579 GISKLVSLQHLDLSLTNIEKLSG--ELKALVNLKCLNLEYTWSLVTIP--QQLIASFLRLHVLRMFGVGDDAFEVASEDS 654 (896)
Q Consensus 579 ~i~~L~~L~~L~Ls~~~i~~lp~--~l~~L~~L~~L~L~~~~~l~~lp--~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~ 654 (896)
-=+++.+|+...|.++.+...+. ....|++++.|||++| .+...- ..++..|++|+.|+++.|......
T Consensus 116 kQsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~N-L~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~------ 188 (505)
T KOG3207|consen 116 KQSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRN-LFHNWFPVLKIAEQLPSLENLNLSSNRLSNFI------ 188 (505)
T ss_pred HhhhHHhhhheeecCccccccchhhhhhhCCcceeecchhh-hHHhHHHHHHHHHhcccchhcccccccccCCc------
Confidence 34567788888888888776663 5678888888888888 444332 123567888888888877654311
Q ss_pred ccccCccccHHHhcCCCCCcEEEEEecCchhhhhhhccccccccceeeeeeecCCCCeeeeccccccCCcCeEeeccCCC
Q 002657 655 VLFDGGEFLVEELLGLNHLEVLSLTLRSPYALQSFLTSHKLQCCTQALFLQYFKDSTSLVVSSLANLKRLNVLRIADCEK 734 (896)
Q Consensus 655 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~ 734 (896)
..... ..+++|+.|.++.|+.+ .......+..+|+|+.|++.+|..
T Consensus 189 ------~s~~~--~~l~~lK~L~l~~CGls--------------------------~k~V~~~~~~fPsl~~L~L~~N~~ 234 (505)
T KOG3207|consen 189 ------SSNTT--LLLSHLKQLVLNSCGLS--------------------------WKDVQWILLTFPSLEVLYLEANEI 234 (505)
T ss_pred ------cccch--hhhhhhheEEeccCCCC--------------------------HHHHHHHHHhCCcHHHhhhhcccc
Confidence 01111 13455555555544432 111112344578888888887753
Q ss_pred CceEEecCCCccccccCCCccEEEeccCCCCCC--CccccCCCCCCEEeEecCcccchhcccCcccCCCCCcCccccEee
Q 002657 735 LEELKIDYTGEIQHFGFRSLCKVEIARCQKLKD--LTFLVFAPNLESIEVKSCLALEEIVSDVPEAMGNLNLFAKLQYLE 812 (896)
Q Consensus 735 l~~l~~~~~~~~~~~~~~~L~~L~L~~c~~l~~--l~~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~L~~L~ 812 (896)
+. ... .+...+..|+.|+|++++.+.. ++-.+.+|.|+.|+++.| .+.++.....+.......||+|++|+
T Consensus 235 ~~---~~~---~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~t-gi~si~~~d~~s~~kt~~f~kL~~L~ 307 (505)
T KOG3207|consen 235 IL---IKA---TSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSST-GIASIAEPDVESLDKTHTFPKLEYLN 307 (505)
T ss_pred cc---eec---chhhhhhHHhhccccCCcccccccccccccccchhhhhcccc-CcchhcCCCccchhhhcccccceeee
Confidence 22 111 1123477888888888744333 234678888888888874 45554321111123456788888888
Q ss_pred ccCCCcccccCC--CCCCCCCccEEeE
Q 002657 813 LLGLPNLKSIYW--KPLSFPRLKEMTI 837 (896)
Q Consensus 813 l~~~~~l~~i~~--~~~~~~~L~~L~i 837 (896)
+..+ +...|+. ....+++|+.|.+
T Consensus 308 i~~N-~I~~w~sl~~l~~l~nlk~l~~ 333 (505)
T KOG3207|consen 308 ISEN-NIRDWRSLNHLRTLENLKHLRI 333 (505)
T ss_pred cccC-ccccccccchhhccchhhhhhc
Confidence 8874 3444432 2234556666554
No 44
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.77 E-value=3.7e-07 Score=104.09 Aligned_cols=205 Identities=13% Similarity=0.104 Sum_probs=119.8
Q ss_pred ccchHHHHHHHHHHhcc-----CCCeEEEEEcCCCchHHHHHHHHHhhhccC--CCCCC--eEEEEEeCCccCHHHHHHH
Q 002657 156 VVGLQSQLEQVWRCLVE-----EPAGIVGLYGMGGVGKTTLLTHINNKFLQV--PNDFD--CVIWVVVSKDLRLENIQEI 226 (896)
Q Consensus 156 ~vGr~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~~f~--~~~wv~~~~~~~~~~~~~~ 226 (896)
+.||++|+++|...|.. ....++.|+|++|.|||+.++.|.+.+... ..... .+++|.+..-.+...++..
T Consensus 757 LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIYqv 836 (1164)
T PTZ00112 757 LPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAYQV 836 (1164)
T ss_pred CCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHHHH
Confidence 78999999999988864 234678899999999999999998876211 11222 3567777776788889999
Q ss_pred HHHhcCCCCccccccCHHHHHHHHHHHhC---CceEEEEEecCCCcc--ccccccccCCCCCCCCcEEEE--ecCCHH--
Q 002657 227 IGGKIGLMNESWKSKSLQEKSLDIFKILG---EKKFVLLLDDLWQRV--DLTKVGVPLPSPQSSASKVVF--TTRSEE-- 297 (896)
Q Consensus 227 i~~~l~~~~~~~~~~~~~~~~~~l~~~l~---~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~~s~iiv--TtR~~~-- 297 (896)
|.+++..... .......+....+...+. +...+||||+++... .-+.+...+......+++|+| +|...+
T Consensus 837 I~qqL~g~~P-~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNdlDLp 915 (1164)
T PTZ00112 837 LYKQLFNKKP-PNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNTMDLP 915 (1164)
T ss_pred HHHHHcCCCC-CccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCchhcc
Confidence 9988843221 122233345555555542 234589999996432 111121111111123445444 343222
Q ss_pred ------HHhhhccCcceeccCCChHhHHHHHHHHhcCcc-cCCCCChHHHHHHHHHHhCCCchHHHHHHHhh
Q 002657 298 ------ICGLMEAQKKFKVACLSDKDAWELFCHKVGEET-LNNHPDIPELAQTVAKECGGMPLALITIGRAM 362 (896)
Q Consensus 298 ------v~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~-~~~~~~~~~~~~~i~~~~~GlPlai~~~~~~l 362 (896)
+...++ ...+...|++.++-.+++..++.... .-.+..++-+|+.++...|..-.||.++-.+.
T Consensus 916 erLdPRLRSRLg-~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAg 986 (1164)
T PTZ00112 916 ERLIPRCRSRLA-FGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAF 986 (1164)
T ss_pred hhhhhhhhhccc-cccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHH
Confidence 112221 23467799999999999999886432 11122233334444444455566666654444
No 45
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.72 E-value=6.1e-07 Score=99.95 Aligned_cols=173 Identities=17% Similarity=0.152 Sum_probs=105.4
Q ss_pred ccchHHHHHH---HHHHhccCCCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHhcC
Q 002657 156 VVGLQSQLEQ---VWRCLVEEPAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDLRLENIQEIIGGKIG 232 (896)
Q Consensus 156 ~vGr~~~~~~---l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 232 (896)
+||++..+.. +..++..+....+.++|++|+||||+|+.+++.. ...| +.++.......-.+.+.
T Consensus 14 ~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~---~~~~-----~~l~a~~~~~~~ir~ii---- 81 (413)
T PRK13342 14 VVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGAT---DAPF-----EALSAVTSGVKDLREVI---- 81 (413)
T ss_pred hcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHh---CCCE-----EEEecccccHHHHHHHH----
Confidence 8999888666 8888877777788999999999999999999876 2222 22222111111111111
Q ss_pred CCCccccccCHHHHHHHHHHH-hCCceEEEEEecCCCc--cccccccccCCCCCCCCcEEEE--ecCCHHH---Hhhhcc
Q 002657 233 LMNESWKSKSLQEKSLDIFKI-LGEKKFVLLLDDLWQR--VDLTKVGVPLPSPQSSASKVVF--TTRSEEI---CGLMEA 304 (896)
Q Consensus 233 ~~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~~s~iiv--TtR~~~v---~~~~~~ 304 (896)
...... ..+++.+|++|+++.. ...+.+...+. .+..++| ||.+... ....+.
T Consensus 82 ---------------~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le----~~~iilI~att~n~~~~l~~aL~SR 142 (413)
T PRK13342 82 ---------------EEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVE----DGTITLIGATTENPSFEVNPALLSR 142 (413)
T ss_pred ---------------HHHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhh----cCcEEEEEeCCCChhhhccHHHhcc
Confidence 111111 2457889999999753 23333333332 2444444 3444321 122233
Q ss_pred CcceeccCCChHhHHHHHHHHhcCcccCCCCChHHHHHHHHHHhCCCchHHHHHH
Q 002657 305 QKKFKVACLSDKDAWELFCHKVGEETLNNHPDIPELAQTVAKECGGMPLALITIG 359 (896)
Q Consensus 305 ~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~~ 359 (896)
...+.+.+++.++.++++.+.+.........-..+....|++.|+|.|..+..+.
T Consensus 143 ~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~L 197 (413)
T PRK13342 143 AQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLL 197 (413)
T ss_pred ceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHH
Confidence 4678999999999999999876432100002235667889999999997764443
No 46
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.72 E-value=1.5e-09 Score=106.76 Aligned_cols=131 Identities=28% Similarity=0.413 Sum_probs=109.2
Q ss_pred CCCcccceEEEeeccccccccc-CCCCCCccEEecccccccccchhhhccCCCCcEEEccCCcccccccccccCCCCCCE
Q 002657 510 VRGWENVSRLSLMQNRIKNLSE-IPKCPHLLTLFLNSNELKIITNDFFQFMPSLKVLSLSRNRRLTNLQLGISKLVSLQH 588 (896)
Q Consensus 510 ~~~~~~lr~L~l~~~~~~~l~~-~~~~~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~ 588 (896)
...|..+..+++++|.|..+.. ..-.|++|.|++++|.+..+.. +..+++|..||||+| .+.++-..-.+|-|++.
T Consensus 280 ~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n--La~L~~L~~LDLS~N-~Ls~~~Gwh~KLGNIKt 356 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN--LAELPQLQLLDLSGN-LLAECVGWHLKLGNIKT 356 (490)
T ss_pred cchHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh--hhhcccceEeecccc-hhHhhhhhHhhhcCEee
Confidence 4467889999999999988754 4557999999999999888776 788999999999999 77777655567888999
Q ss_pred EeccCCCccccchhhhcCCCCCEeeccccccccCCcH-HHHhccccccEEEeeccCCC
Q 002657 589 LDLSLTNIEKLSGELKALVNLKCLNLEYTWSLVTIPQ-QLIASFLRLHVLRMFGVGDD 645 (896)
Q Consensus 589 L~Ls~~~i~~lp~~l~~L~~L~~L~L~~~~~l~~lp~-~~i~~l~~L~~L~l~~~~~~ 645 (896)
|.|++|.|+.+. ++++|.+|..||+++| +++.+.. ..|++|+-|++|.+.+|...
T Consensus 357 L~La~N~iE~LS-GL~KLYSLvnLDl~~N-~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 357 LKLAQNKIETLS-GLRKLYSLVNLDLSSN-QIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred eehhhhhHhhhh-hhHhhhhheecccccc-chhhHHHhcccccccHHHHHhhcCCCcc
Confidence 999999998886 7899999999999999 6666642 12889999999999988665
No 47
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.72 E-value=1.4e-09 Score=116.26 Aligned_cols=152 Identities=30% Similarity=0.376 Sum_probs=94.2
Q ss_pred cceEEEeeccccccccc-CCCCCCccEEecccccccccchhhhccCCCCcEEEccCCcccccccccccCCCCCCEEeccC
Q 002657 515 NVSRLSLMQNRIKNLSE-IPKCPHLLTLFLNSNELKIITNDFFQFMPSLKVLSLSRNRRLTNLQLGISKLVSLQHLDLSL 593 (896)
Q Consensus 515 ~lr~L~l~~~~~~~l~~-~~~~~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~Ls~ 593 (896)
.+..+.++.|.+..++. +.++..|.+|+|+.|.++.+|.. ++.| -|++|-+++| +++.+|..++.+.+|..||.+.
T Consensus 99 ~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~-lC~l-pLkvli~sNN-kl~~lp~~ig~~~tl~~ld~s~ 175 (722)
T KOG0532|consen 99 SLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDG-LCDL-PLKVLIVSNN-KLTSLPEEIGLLPTLAHLDVSK 175 (722)
T ss_pred HHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChh-hhcC-cceeEEEecC-ccccCCcccccchhHHHhhhhh
Confidence 34445555565555543 56666666677777766666665 3333 4667767766 6666777777666677777777
Q ss_pred CCccccchhhhcCCCCCEeeccccccccCCcHHHHhccccccEEEeeccCCCcccccccccccccCccccHHHhcCCCCC
Q 002657 594 TNIEKLSGELKALVNLKCLNLEYTWSLVTIPQQLIASFLRLHVLRMFGVGDDAFEVASEDSVLFDGGEFLVEELLGLNHL 673 (896)
Q Consensus 594 ~~i~~lp~~l~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L 673 (896)
|.+..+|..+++|.+|+.|+++.| ++..+|+. +. .-.|..|+++.|+.. ..+..+.+|++|
T Consensus 176 nei~slpsql~~l~slr~l~vrRn-~l~~lp~E-l~-~LpLi~lDfScNkis----------------~iPv~fr~m~~L 236 (722)
T KOG0532|consen 176 NEIQSLPSQLGYLTSLRDLNVRRN-HLEDLPEE-LC-SLPLIRLDFSCNKIS----------------YLPVDFRKMRHL 236 (722)
T ss_pred hhhhhchHHhhhHHHHHHHHHhhh-hhhhCCHH-Hh-CCceeeeecccCcee----------------ecchhhhhhhhh
Confidence 777777766777777777777666 56666665 33 334666666655443 345556666677
Q ss_pred cEEEEEecCchhhhh
Q 002657 674 EVLSLTLRSPYALQS 688 (896)
Q Consensus 674 ~~L~l~~~~~~~~~~ 688 (896)
++|-|.+|...+-+.
T Consensus 237 q~l~LenNPLqSPPA 251 (722)
T KOG0532|consen 237 QVLQLENNPLQSPPA 251 (722)
T ss_pred eeeeeccCCCCCChH
Confidence 777666666554443
No 48
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.69 E-value=3.7e-06 Score=87.61 Aligned_cols=220 Identities=17% Similarity=0.142 Sum_probs=124.8
Q ss_pred ccchHHHH---HHHHHHhccCCCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHhcC
Q 002657 156 VVGLQSQL---EQVWRCLVEEPAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDLRLENIQEIIGGKIG 232 (896)
Q Consensus 156 ~vGr~~~~---~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 232 (896)
+||.+.-+ .-|-.++..+.+...-.||++|+||||||+.++... ...|. .++-..+-.+-++++
T Consensus 26 ~vGQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~---~~~f~-----~~sAv~~gvkdlr~i----- 92 (436)
T COG2256 26 VVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTT---NAAFE-----ALSAVTSGVKDLREI----- 92 (436)
T ss_pred hcChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhh---CCceE-----EeccccccHHHHHHH-----
Confidence 56655433 234455566788888899999999999999999876 34443 222222211111222
Q ss_pred CCCccccccCHHHHHHHH-HHHhCCceEEEEEecCCC--ccccccccccCCCCCCCCcEEEE--ecCCHHH---Hhhhcc
Q 002657 233 LMNESWKSKSLQEKSLDI-FKILGEKKFVLLLDDLWQ--RVDLTKVGVPLPSPQSSASKVVF--TTRSEEI---CGLMEA 304 (896)
Q Consensus 233 ~~~~~~~~~~~~~~~~~l-~~~l~~kr~LlVlDdv~~--~~~~~~l~~~~~~~~~~~s~iiv--TtR~~~v---~~~~~~ 304 (896)
.+.- .....+++.+|++|.|.. ..+.+.+. | .-.+|.-|+| ||-++.. ....+.
T Consensus 93 --------------~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~lL---p-~vE~G~iilIGATTENPsF~ln~ALlSR 154 (436)
T COG2256 93 --------------IEEARKNRLLGRRTILFLDEIHRFNKAQQDALL---P-HVENGTIILIGATTENPSFELNPALLSR 154 (436)
T ss_pred --------------HHHHHHHHhcCCceEEEEehhhhcChhhhhhhh---h-hhcCCeEEEEeccCCCCCeeecHHHhhh
Confidence 2222 122348999999999953 33444333 3 4456766666 6666543 233455
Q ss_pred CcceeccCCChHhHHHHHHHHhcCcccC---CCCCh-HHHHHHHHHHhCCCchHH-HHH--HHhhcCCC---CHHHHHHH
Q 002657 305 QKKFKVACLSDKDAWELFCHKVGEETLN---NHPDI-PELAQTVAKECGGMPLAL-ITI--GRAMSCKR---TPQEWRHA 374 (896)
Q Consensus 305 ~~~~~l~~L~~~e~~~Lf~~~~~~~~~~---~~~~~-~~~~~~i~~~~~GlPlai-~~~--~~~l~~~~---~~~~w~~~ 374 (896)
..++.+++|+.++-.+++.+.+-..... ....+ ++....+++.++|---++ ..+ +..+.... ..+..++.
T Consensus 155 ~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aLN~LE~~~~~~~~~~~~~~~~l~~~ 234 (436)
T COG2256 155 ARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRALNLLELAALSAEPDEVLILELLEEI 234 (436)
T ss_pred hheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHHHHHHHHHHHhcCCCcccCHHHHHHH
Confidence 6789999999999999999944322211 11112 446777888888865443 222 22222211 23334443
Q ss_pred HHHHhcccCCCCCCccchhhhHHhhhcCCCcc
Q 002657 375 IQVLRTTASEFPGLGNEVYPLLKFSYESLPND 406 (896)
Q Consensus 375 l~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~ 406 (896)
++.-........+..-++.+++.-|...-.++
T Consensus 235 l~~~~~~~Dk~gD~hYdliSA~hKSvRGSD~d 266 (436)
T COG2256 235 LQRRSARFDKDGDAHYDLISALHKSVRGSDPD 266 (436)
T ss_pred HhhhhhccCCCcchHHHHHHHHHHhhccCCcC
Confidence 33222222222222236777788888877774
No 49
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.68 E-value=1.7e-07 Score=95.93 Aligned_cols=168 Identities=13% Similarity=0.117 Sum_probs=101.7
Q ss_pred hHHHHHHHHHHhccCCCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHhcCCCCccc
Q 002657 159 LQSQLEQVWRCLVEEPAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDLRLENIQEIIGGKIGLMNESW 238 (896)
Q Consensus 159 r~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~ 238 (896)
.+..++.+.+++.....+.+.|+|++|+|||++|+.+++... ......++++++.-.. ..
T Consensus 22 ~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~---~~~~~~~~i~~~~~~~------~~----------- 81 (226)
T TIGR03420 22 NAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAE---ERGKSAIYLPLAELAQ------AD----------- 81 (226)
T ss_pred cHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHH---hcCCcEEEEeHHHHHH------hH-----------
Confidence 445677777776566677899999999999999999998762 2233455665433211 00
Q ss_pred cccCHHHHHHHHHHHhCCceEEEEEecCCCcc---ccc-cccccCCCCCCCCcEEEEecCCHH---------HHhhhccC
Q 002657 239 KSKSLQEKSLDIFKILGEKKFVLLLDDLWQRV---DLT-KVGVPLPSPQSSASKVVFTTRSEE---------ICGLMEAQ 305 (896)
Q Consensus 239 ~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~---~~~-~l~~~~~~~~~~~s~iivTtR~~~---------v~~~~~~~ 305 (896)
..+.+.+++. -+||+||++... .|. .+...+......+..+|+||+... +...+...
T Consensus 82 ---------~~~~~~~~~~-~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~ 151 (226)
T TIGR03420 82 ---------PEVLEGLEQA-DLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWG 151 (226)
T ss_pred ---------HHHHhhcccC-CEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcC
Confidence 0111122222 389999996432 222 232222211123457888888532 22222334
Q ss_pred cceeccCCChHhHHHHHHHHhcCcccCCCCChHHHHHHHHHHhCCCchHHHHHH
Q 002657 306 KKFKVACLSDKDAWELFCHKVGEETLNNHPDIPELAQTVAKECGGMPLALITIG 359 (896)
Q Consensus 306 ~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~~ 359 (896)
..+++.+++.++...++.+.+...... --.+..+.+++.+.|+|..+..+.
T Consensus 152 ~~i~l~~l~~~e~~~~l~~~~~~~~~~---~~~~~l~~L~~~~~gn~r~L~~~l 202 (226)
T TIGR03420 152 LVFQLPPLSDEEKIAALQSRAARRGLQ---LPDEVADYLLRHGSRDMGSLMALL 202 (226)
T ss_pred eeEecCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHhccCCHHHHHHHH
Confidence 678999999999999988765332211 224567888888999888775554
No 50
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.66 E-value=2.2e-08 Score=112.00 Aligned_cols=120 Identities=30% Similarity=0.422 Sum_probs=74.6
Q ss_pred EEeecccc-cccccCCCCCCccEEecccccccccchhhhccCC-CCcEEEccCCcccccccccccCCCCCCEEeccCCCc
Q 002657 519 LSLMQNRI-KNLSEIPKCPHLLTLFLNSNELKIITNDFFQFMP-SLKVLSLSRNRRLTNLQLGISKLVSLQHLDLSLTNI 596 (896)
Q Consensus 519 L~l~~~~~-~~l~~~~~~~~L~~L~l~~n~l~~i~~~~~~~l~-~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~Ls~~~i 596 (896)
+....+.+ .........+.+..|++.+|.++.+++. ...+. +|+.|++++| .+..+|..++.+++|+.|++++|++
T Consensus 98 l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~-~~~~~~nL~~L~l~~N-~i~~l~~~~~~l~~L~~L~l~~N~l 175 (394)
T COG4886 98 LDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPL-IGLLKSNLKELDLSDN-KIESLPSPLRNLPNLKNLDLSFNDL 175 (394)
T ss_pred eeccccccccCchhhhcccceeEEecCCcccccCccc-cccchhhccccccccc-chhhhhhhhhccccccccccCCchh
Confidence 44444444 3333344456677777777766666654 33342 6777777777 6666666677777777777777777
Q ss_pred cccchhhhcCCCCCEeeccccccccCCcHHHHhccccccEEEeecc
Q 002657 597 EKLSGELKALVNLKCLNLEYTWSLVTIPQQLIASFLRLHVLRMFGV 642 (896)
Q Consensus 597 ~~lp~~l~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~~ 642 (896)
..+|...+.+++|+.|++++| .+..+|.. +..+..|++|.+.++
T Consensus 176 ~~l~~~~~~~~~L~~L~ls~N-~i~~l~~~-~~~~~~L~~l~~~~N 219 (394)
T COG4886 176 SDLPKLLSNLSNLNNLDLSGN-KISDLPPE-IELLSALEELDLSNN 219 (394)
T ss_pred hhhhhhhhhhhhhhheeccCC-ccccCchh-hhhhhhhhhhhhcCC
Confidence 777766556677777777777 56666653 344555666666544
No 51
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.65 E-value=2.6e-08 Score=77.73 Aligned_cols=60 Identities=42% Similarity=0.565 Sum_probs=42.5
Q ss_pred CCccEEecccccccccchhhhccCCCCcEEEccCCcccccccc-cccCCCCCCEEeccCCCc
Q 002657 536 PHLLTLFLNSNELKIITNDFFQFMPSLKVLSLSRNRRLTNLQL-GISKLVSLQHLDLSLTNI 596 (896)
Q Consensus 536 ~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~Ls~~~~i~~lp~-~i~~L~~L~~L~Ls~~~i 596 (896)
|+|++|++++|.++.++++.|.++++|++|++++| .++.+|. .|..+++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 46777777777777777777777777777777777 6666653 567777777777777654
No 52
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.59 E-value=4.6e-08 Score=109.37 Aligned_cols=151 Identities=27% Similarity=0.348 Sum_probs=120.6
Q ss_pred CcccceEEEeecccccccccCCCCC--CccEEecccccccccchhhhccCCCCcEEEccCCcccccccccccCCCCCCEE
Q 002657 512 GWENVSRLSLMQNRIKNLSEIPKCP--HLLTLFLNSNELKIITNDFFQFMPSLKVLSLSRNRRLTNLQLGISKLVSLQHL 589 (896)
Q Consensus 512 ~~~~lr~L~l~~~~~~~l~~~~~~~--~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L 589 (896)
..+.+..|++.+|.+..++...... +|+.|++++|.+..++.. +..+++|+.|++++| .+..+|...+.+++|+.|
T Consensus 114 ~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~-~~~l~~L~~L~l~~N-~l~~l~~~~~~~~~L~~L 191 (394)
T COG4886 114 ELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSP-LRNLPNLKNLDLSFN-DLSDLPKLLSNLSNLNNL 191 (394)
T ss_pred cccceeEEecCCcccccCccccccchhhcccccccccchhhhhhh-hhccccccccccCCc-hhhhhhhhhhhhhhhhhe
Confidence 3467899999999999998865554 899999999999988643 788999999999999 999999888899999999
Q ss_pred eccCCCccccchhhhcCCCCCEeeccccccccCCcHHHHhccccccEEEeeccCCCcccccccccccccCccccHHHhcC
Q 002657 590 DLSLTNIEKLSGELKALVNLKCLNLEYTWSLVTIPQQLIASFLRLHVLRMFGVGDDAFEVASEDSVLFDGGEFLVEELLG 669 (896)
Q Consensus 590 ~Ls~~~i~~lp~~l~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 669 (896)
++++|++..+|..+..+..|++|.+++|. +..++.. +.+++++..|.+.++... ..+..++.
T Consensus 192 ~ls~N~i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~-~~~~~~l~~l~l~~n~~~----------------~~~~~~~~ 253 (394)
T COG4886 192 DLSGNKISDLPPEIELLSALEELDLSNNS-IIELLSS-LSNLKNLSGLELSNNKLE----------------DLPESIGN 253 (394)
T ss_pred eccCCccccCchhhhhhhhhhhhhhcCCc-ceecchh-hhhcccccccccCCceee----------------eccchhcc
Confidence 99999999999888788889999999994 3444443 788888888876654332 12344556
Q ss_pred CCCCcEEEEEecC
Q 002657 670 LNHLEVLSLTLRS 682 (896)
Q Consensus 670 l~~L~~L~l~~~~ 682 (896)
+.+++.|+++.+.
T Consensus 254 l~~l~~L~~s~n~ 266 (394)
T COG4886 254 LSNLETLDLSNNQ 266 (394)
T ss_pred ccccceecccccc
Confidence 6666666666544
No 53
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.58 E-value=3.1e-09 Score=109.73 Aligned_cols=297 Identities=17% Similarity=0.180 Sum_probs=180.5
Q ss_pred cceEEEeeccccccccc----CCCCCCccEEecccc-cccccc-hhhhccCCCCcEEEccCCccccccc--ccccCCCCC
Q 002657 515 NVSRLSLMQNRIKNLSE----IPKCPHLLTLFLNSN-ELKIIT-NDFFQFMPSLKVLSLSRNRRLTNLQ--LGISKLVSL 586 (896)
Q Consensus 515 ~lr~L~l~~~~~~~l~~----~~~~~~L~~L~l~~n-~l~~i~-~~~~~~l~~L~~L~Ls~~~~i~~lp--~~i~~L~~L 586 (896)
.++.|++.+..-..... ...|++++.|.+.+| .+++.. .++-..++.|++|+|..|..++... .....+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 56778887765433322 367899999988888 343332 1223568899999999986776532 233458889
Q ss_pred CEEeccCC-Ccc--ccchhhhcCCCCCEeeccccccccCCcHHHHh----ccccccEEEeeccCCCcccccccccccccC
Q 002657 587 QHLDLSLT-NIE--KLSGELKALVNLKCLNLEYTWSLVTIPQQLIA----SFLRLHVLRMFGVGDDAFEVASEDSVLFDG 659 (896)
Q Consensus 587 ~~L~Ls~~-~i~--~lp~~l~~L~~L~~L~L~~~~~l~~lp~~~i~----~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 659 (896)
+||++++| .|+ .+..-..++.+|+.+.++||. +++...+. .+.-+-.+++..|...+
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~---e~~le~l~~~~~~~~~i~~lnl~~c~~lT------------- 282 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCL---ELELEALLKAAAYCLEILKLNLQHCNQLT------------- 282 (483)
T ss_pred HHhhhccCchhhcCcchHHhccchhhhhhhhcccc---cccHHHHHHHhccChHhhccchhhhcccc-------------
Confidence 99999987 343 233334566778888888883 33433332 23334555554553221
Q ss_pred ccccHHHhcCCCCCcEEEEEecCchhhhhhhccccccccceeeeeeecCCCCeeeecccc-ccCCcCeEeeccCCCCceE
Q 002657 660 GEFLVEELLGLNHLEVLSLTLRSPYALQSFLTSHKLQCCTQALFLQYFKDSTSLVVSSLA-NLKRLNVLRIADCEKLEEL 738 (896)
Q Consensus 660 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~-~l~~L~~L~L~~~~~l~~l 738 (896)
.......-..+..|+.|..+.+....-..+.....-..+|+.+.+..|......-+..++ +++.|+.+++..|....+.
T Consensus 283 D~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~ 362 (483)
T KOG4341|consen 283 DEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDG 362 (483)
T ss_pred chHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhh
Confidence 012222223456777777765543222222222223467888888888765554444443 5688999988887544322
Q ss_pred EecCCCccccccCCCccEEEeccCCCCCCC--cc----ccCCCCCCEEeEecCcccchhcccCcccCCCCCcCccccEee
Q 002657 739 KIDYTGEIQHFGFRSLCKVEIARCQKLKDL--TF----LVFAPNLESIEVKSCLALEEIVSDVPEAMGNLNLFAKLQYLE 812 (896)
Q Consensus 739 ~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l--~~----l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~L~~L~ 812 (896)
... ....+++.|+.|.|+.|..+++. -. -..+..|+.|.+++|+.+++-.- ..+..+++|+.++
T Consensus 363 --tL~--sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~L------e~l~~c~~Leri~ 432 (483)
T KOG4341|consen 363 --TLA--SLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATL------EHLSICRNLERIE 432 (483)
T ss_pred --hHh--hhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHH------HHHhhCcccceee
Confidence 111 12346889999999988777664 11 23567889999999988877532 4556678889888
Q ss_pred ccCCCcccccCC--CCCCCCCccEEeE
Q 002657 813 LLGLPNLKSIYW--KPLSFPRLKEMTI 837 (896)
Q Consensus 813 l~~~~~l~~i~~--~~~~~~~L~~L~i 837 (896)
+.+|.....-+. ...++|+++...+
T Consensus 433 l~~~q~vtk~~i~~~~~~lp~i~v~a~ 459 (483)
T KOG4341|consen 433 LIDCQDVTKEAISRFATHLPNIKVHAY 459 (483)
T ss_pred eechhhhhhhhhHHHHhhCccceehhh
Confidence 888877655433 2345666665443
No 54
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.55 E-value=1.8e-05 Score=92.07 Aligned_cols=200 Identities=14% Similarity=0.077 Sum_probs=117.2
Q ss_pred ccchHHHHHHHHHHhccCCCeEEEEEcCCCchHHHHHHHHHhhhccCCCCC---CeEEEEEeCCc---cCHHHHHHHH--
Q 002657 156 VVGLQSQLEQVWRCLVEEPAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDF---DCVIWVVVSKD---LRLENIQEII-- 227 (896)
Q Consensus 156 ~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f---~~~~wv~~~~~---~~~~~~~~~i-- 227 (896)
++|++..+..+.+.+.......+.|+|++|+||||+|+.+++.. .....+ ...-|+.+... .+...+...+
T Consensus 156 iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~-~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~~llg 234 (615)
T TIGR02903 156 IVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEA-KKLKHTPFAEDAPFVEVDGTTLRWDPREVTNPLLG 234 (615)
T ss_pred ceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhh-hhccCCcccCCCCeEEEechhccCCHHHHhHHhcC
Confidence 89999999998888876666789999999999999999998765 222222 12345544321 1222221111
Q ss_pred -------------HHhcCCCC----------------ccccccCHHHHHHHHHHHhCCceEEEEEecCCCc--ccccccc
Q 002657 228 -------------GGKIGLMN----------------ESWKSKSLQEKSLDIFKILGEKKFVLLLDDLWQR--VDLTKVG 276 (896)
Q Consensus 228 -------------~~~l~~~~----------------~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~--~~~~~l~ 276 (896)
+...+... +..... ....+..+.+.++++++.++-|+.|.. ..|..+.
T Consensus 235 ~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~L-d~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik 313 (615)
T TIGR02903 235 SVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGEL-DPLLQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIK 313 (615)
T ss_pred CccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccC-CHHHHHHHHHHHhhCeEEeecceeccCCcccchhhh
Confidence 11111110 001111 223567788888889998887776643 3477766
Q ss_pred ccCCCCCCCCcEEEE--ecCCHHH-H-hhhccCcceeccCCChHhHHHHHHHHhcCcccCCCCChHHHHHHHHHHhCCCc
Q 002657 277 VPLPSPQSSASKVVF--TTRSEEI-C-GLMEAQKKFKVACLSDKDAWELFCHKVGEETLNNHPDIPELAQTVAKECGGMP 352 (896)
Q Consensus 277 ~~~~~~~~~~s~iiv--TtR~~~v-~-~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~GlP 352 (896)
..+. ...+...|++ ||++... . ........+.+.+++.+|.+.++.+.+....... -.++.+.|++.+..-+
T Consensus 314 ~~~~-~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v~l---s~eal~~L~~ys~~gR 389 (615)
T TIGR02903 314 KLFE-EGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINVHL---AAGVEELIARYTIEGR 389 (615)
T ss_pred hhcc-cCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHCCCcHH
Confidence 5554 3444444554 5664432 1 1112234678899999999999999775432111 1344555555554445
Q ss_pred hHHHHHHHh
Q 002657 353 LALITIGRA 361 (896)
Q Consensus 353 lai~~~~~~ 361 (896)
-|+..++.+
T Consensus 390 raln~L~~~ 398 (615)
T TIGR02903 390 KAVNILADV 398 (615)
T ss_pred HHHHHHHHH
Confidence 566555443
No 55
>PRK04195 replication factor C large subunit; Provisional
Probab=98.52 E-value=7.6e-06 Score=93.14 Aligned_cols=240 Identities=18% Similarity=0.225 Sum_probs=135.0
Q ss_pred ccchHHHHHHHHHHhcc----CCCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHhc
Q 002657 156 VVGLQSQLEQVWRCLVE----EPAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDLRLENIQEIIGGKI 231 (896)
Q Consensus 156 ~vGr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 231 (896)
++|.++.++++.+|+.. ...+.+.|+|++|+||||+|+.++++. .|+. +-+..++..+.. ....++...
T Consensus 16 lvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el-----~~~~-ielnasd~r~~~-~i~~~i~~~ 88 (482)
T PRK04195 16 VVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDY-----GWEV-IELNASDQRTAD-VIERVAGEA 88 (482)
T ss_pred hcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHc-----CCCE-EEEcccccccHH-HHHHHHHHh
Confidence 89999999999999864 126789999999999999999999986 2332 333444332222 222222221
Q ss_pred CCCCccccccCHHHHHHHHHHHhCCceEEEEEecCCCccc------cccccccCCCCCCCCcEEEEecCCHH-HH--hhh
Q 002657 232 GLMNESWKSKSLQEKSLDIFKILGEKKFVLLLDDLWQRVD------LTKVGVPLPSPQSSASKVVFTTRSEE-IC--GLM 302 (896)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~------~~~l~~~~~~~~~~~s~iivTtR~~~-v~--~~~ 302 (896)
.... .....++-+||+|+++.... +..+...+. ..+..||+|+.+.. .. ...
T Consensus 89 ~~~~----------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~---~~~~~iIli~n~~~~~~~k~Lr 149 (482)
T PRK04195 89 ATSG----------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIK---KAKQPIILTANDPYDPSLRELR 149 (482)
T ss_pred hccC----------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHH---cCCCCEEEeccCccccchhhHh
Confidence 1100 00113677999999975422 333332222 22344666664321 11 122
Q ss_pred ccCcceeccCCChHhHHHHHHHHhcCcccCCCCChHHHHHHHHHHhCCCchHHHHHHHhhcCCC---CHHHHHHHHHHHh
Q 002657 303 EAQKKFKVACLSDKDAWELFCHKVGEETLNNHPDIPELAQTVAKECGGMPLALITIGRAMSCKR---TPQEWRHAIQVLR 379 (896)
Q Consensus 303 ~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~~~~l~~~~---~~~~w~~~l~~l~ 379 (896)
.....+++.+++.++....+.+.+.......+ .+....|++.++|..-.+......+.... +.+....+.
T Consensus 150 sr~~~I~f~~~~~~~i~~~L~~i~~~egi~i~---~eaL~~Ia~~s~GDlR~ain~Lq~~a~~~~~it~~~v~~~~---- 222 (482)
T PRK04195 150 NACLMIEFKRLSTRSIVPVLKRICRKEGIECD---DEALKEIAERSGGDLRSAINDLQAIAEGYGKLTLEDVKTLG---- 222 (482)
T ss_pred ccceEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCcHHHHHHhh----
Confidence 33467899999999999988887755442222 46689999999997765543333333321 222222211
Q ss_pred cccCCCCCCccchhhhHHhhhcCCCcchhhHHhhhhccCCCCccccHHHHHHHHHhcCCCCc
Q 002657 380 TTASEFPGLGNEVYPLLKFSYESLPNDIVRSCLLYCSLYPEDYRISKENLIDCWIGESFLNE 441 (896)
Q Consensus 380 ~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cfl~~~~fp~~~~i~~~~li~~w~a~g~i~~ 441 (896)
. .+.+.+++.++..-+..=....+...+..+ .++. ..+-.|+.+.+...
T Consensus 223 ~-----~d~~~~if~~l~~i~~~k~~~~a~~~~~~~-------~~~~-~~i~~~l~en~~~~ 271 (482)
T PRK04195 223 R-----RDREESIFDALDAVFKARNADQALEASYDV-------DEDP-DDLIEWIDENIPKE 271 (482)
T ss_pred c-----CCCCCCHHHHHHHHHCCCCHHHHHHHHHcc-------cCCH-HHHHHHHHhccccc
Confidence 0 112246667666555422221233322221 1222 34678999998765
No 56
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.47 E-value=3.9e-06 Score=95.62 Aligned_cols=191 Identities=14% Similarity=0.139 Sum_probs=110.2
Q ss_pred ccchHHHHHHHHHHhccCCC-eEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHh----
Q 002657 156 VVGLQSQLEQVWRCLVEEPA-GIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDLRLENIQEIIGGK---- 230 (896)
Q Consensus 156 ~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~---- 230 (896)
+||.+..++.|.+++..+++ ..+.++|..|+||||+|+.+.+.+. -...++. .........+.|...
T Consensus 18 VIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLn-Ce~~~~~-------~PCG~C~sCr~I~~G~h~D 89 (830)
T PRK07003 18 LVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALN-CETGVTS-------QPCGVCRACREIDEGRFVD 89 (830)
T ss_pred HcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhc-CccCCCC-------CCCcccHHHHHHhcCCCce
Confidence 89999999999999987654 4567999999999999999988762 1111100 000011111111110
Q ss_pred -cCCCCccccccCHHHHHHHHHHH----hCCceEEEEEecCCCcc--ccccccccCCCCCCCCcEEEEecCCHHH-H-hh
Q 002657 231 -IGLMNESWKSKSLQEKSLDIFKI----LGEKKFVLLLDDLWQRV--DLTKVGVPLPSPQSSASKVVFTTRSEEI-C-GL 301 (896)
Q Consensus 231 -l~~~~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~~s~iivTtR~~~v-~-~~ 301 (896)
+.+.. ......++....+... ..++.-++|||+++... .+..+...+. ....+.++|+||++..- . ..
T Consensus 90 viEIDA--as~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLE-EPP~~v~FILaTtd~~KIp~TI 166 (830)
T PRK07003 90 YVEMDA--ASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLE-EPPPHVKFILATTDPQKIPVTV 166 (830)
T ss_pred EEEecc--cccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHH-hcCCCeEEEEEECChhhccchh
Confidence 00000 0011111211111111 12445588999997543 3555544443 33446777777776542 1 22
Q ss_pred hccCcceeccCCChHhHHHHHHHHhcCcccCCCCChHHHHHHHHHHhCCCc-hHHHHHHH
Q 002657 302 MEAQKKFKVACLSDKDAWELFCHKVGEETLNNHPDIPELAQTVAKECGGMP-LALITIGR 360 (896)
Q Consensus 302 ~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~GlP-lai~~~~~ 360 (896)
.+....+++++++.++..+.+.+.+....... -.+....|++.++|.. -|+..+-.
T Consensus 167 rSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~i---d~eAL~lIA~~A~GsmRdALsLLdQ 223 (830)
T PRK07003 167 LSRCLQFNLKQMPAGHIVSHLERILGEERIAF---EPQALRLLARAAQGSMRDALSLTDQ 223 (830)
T ss_pred hhheEEEecCCcCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 33456899999999999999998876543222 2566788999998855 45555433
No 57
>PF13173 AAA_14: AAA domain
Probab=98.47 E-value=3.3e-07 Score=84.01 Aligned_cols=120 Identities=17% Similarity=0.164 Sum_probs=81.4
Q ss_pred CeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHh
Q 002657 175 AGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDLRLENIQEIIGGKIGLMNESWKSKSLQEKSLDIFKIL 254 (896)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 254 (896)
.+++.|.|+-|+||||++++++++. . ....+++++..+........ .+ ....+.+..
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~-~---~~~~~~yi~~~~~~~~~~~~------------------~~-~~~~~~~~~ 58 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDL-L---PPENILYINFDDPRDRRLAD------------------PD-LLEYFLELI 58 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh-c---ccccceeeccCCHHHHHHhh------------------hh-hHHHHHHhh
Confidence 4689999999999999999999886 1 44566777666543211100 00 223333334
Q ss_pred CCceEEEEEecCCCccccccccccCCCCCCCCcEEEEecCCHHHHhh------hccCcceeccCCChHhH
Q 002657 255 GEKKFVLLLDDLWQRVDLTKVGVPLPSPQSSASKVVFTTRSEEICGL------MEAQKKFKVACLSDKDA 318 (896)
Q Consensus 255 ~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~~~s~iivTtR~~~v~~~------~~~~~~~~l~~L~~~e~ 318 (896)
..++.+++||++....+|......+. +.....+|++|+.+...... .+....++|.||+-.|.
T Consensus 59 ~~~~~~i~iDEiq~~~~~~~~lk~l~-d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 59 KPGKKYIFIDEIQYLPDWEDALKFLV-DNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred ccCCcEEEEehhhhhccHHHHHHHHH-HhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 44778899999988888887776665 44456899999998766432 12234689999988763
No 58
>PRK08727 hypothetical protein; Validated
Probab=98.47 E-value=2e-06 Score=87.69 Aligned_cols=167 Identities=12% Similarity=0.092 Sum_probs=97.3
Q ss_pred ccc-hHHHHHHHHHHhccCCCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHhcCCC
Q 002657 156 VVG-LQSQLEQVWRCLVEEPAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDLRLENIQEIIGGKIGLM 234 (896)
Q Consensus 156 ~vG-r~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 234 (896)
|++ -...+..+...........+.|+|.+|+|||+|++.+++... .....+.|+++.+ ....+.
T Consensus 21 f~~~~~n~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~~---~~~~~~~y~~~~~------~~~~~~------ 85 (233)
T PRK08727 21 YIAAPDGLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAAE---QAGRSSAYLPLQA------AAGRLR------ 85 (233)
T ss_pred ccCCcHHHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCcEEEEeHHH------hhhhHH------
Confidence 443 333344333333333445799999999999999999998862 2223556665322 111111
Q ss_pred CccccccCHHHHHHHHHHHhCCceEEEEEecCCCcc---ccccccccC-CCCCCCCcEEEEecCCH---------HHHhh
Q 002657 235 NESWKSKSLQEKSLDIFKILGEKKFVLLLDDLWQRV---DLTKVGVPL-PSPQSSASKVVFTTRSE---------EICGL 301 (896)
Q Consensus 235 ~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~---~~~~l~~~~-~~~~~~~s~iivTtR~~---------~v~~~ 301 (896)
...+.+. +.-+||+||+.... .|......+ ......|..||+|++.. ++.+.
T Consensus 86 --------------~~~~~l~-~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SR 150 (233)
T PRK08727 86 --------------DALEALE-GRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSR 150 (233)
T ss_pred --------------HHHHHHh-cCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHH
Confidence 0111121 23489999996332 232221111 10112466799999853 22334
Q ss_pred hccCcceeccCCChHhHHHHHHHHhcCcccCCCCChHHHHHHHHHHhCCCchHH
Q 002657 302 MEAQKKFKVACLSDKDAWELFCHKVGEETLNNHPDIPELAQTVAKECGGMPLAL 355 (896)
Q Consensus 302 ~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai 355 (896)
+.....+++++++.++-.+++.+++....... -++....|++.++|-.-.+
T Consensus 151 l~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~l---~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 151 LAQCIRIGLPVLDDVARAAVLRERAQRRGLAL---DEAAIDWLLTHGERELAGL 201 (233)
T ss_pred HhcCceEEecCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHhCCCCHHHH
Confidence 44567899999999999999998775433222 2566788888888765544
No 59
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.46 E-value=4.1e-06 Score=89.87 Aligned_cols=175 Identities=14% Similarity=0.164 Sum_probs=113.9
Q ss_pred ccchHHHHHHHHHHhccCCC-eEEEEEcCCCchHHHHHHHHHhhhc---cCCCCCCeEEEEEe-CCccCHHHHHHHHHHh
Q 002657 156 VVGLQSQLEQVWRCLVEEPA-GIVGLYGMGGVGKTTLLTHINNKFL---QVPNDFDCVIWVVV-SKDLRLENIQEIIGGK 230 (896)
Q Consensus 156 ~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~---~~~~~f~~~~wv~~-~~~~~~~~~~~~i~~~ 230 (896)
++|.+..++.+.+++..+.. ..+.++|+.|+||||+|+.+++... ....|+|...|... +....+.++ +++.+.
T Consensus 6 i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~i-r~~~~~ 84 (313)
T PRK05564 6 IIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDI-RNIIEE 84 (313)
T ss_pred ccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHH-HHHHHH
Confidence 78999999999999987654 4668999999999999999998642 12346676666542 222333332 223333
Q ss_pred cCCCCccccccCHHHHHHHHHHHhCCceEEEEEecCC--CccccccccccCCCCCCCCcEEEEecCCHHHH--hhhccCc
Q 002657 231 IGLMNESWKSKSLQEKSLDIFKILGEKKFVLLLDDLW--QRVDLTKVGVPLPSPQSSASKVVFTTRSEEIC--GLMEAQK 306 (896)
Q Consensus 231 l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~--~~~~~~~l~~~~~~~~~~~s~iivTtR~~~v~--~~~~~~~ 306 (896)
+.... ..+++-++|+|+++ +...+..+...+. ....++.+|++|.+.+.. ...+...
T Consensus 85 ~~~~p------------------~~~~~kv~iI~~ad~m~~~a~naLLK~LE-epp~~t~~il~~~~~~~ll~TI~SRc~ 145 (313)
T PRK05564 85 VNKKP------------------YEGDKKVIIIYNSEKMTEQAQNAFLKTIE-EPPKGVFIILLCENLEQILDTIKSRCQ 145 (313)
T ss_pred HhcCc------------------ccCCceEEEEechhhcCHHHHHHHHHHhc-CCCCCeEEEEEeCChHhCcHHHHhhce
Confidence 22111 11344466677664 4456777766665 556688888888765432 1223456
Q ss_pred ceeccCCChHhHHHHHHHHhcCcccCCCCChHHHHHHHHHHhCCCchHHHH
Q 002657 307 KFKVACLSDKDAWELFCHKVGEETLNNHPDIPELAQTVAKECGGMPLALIT 357 (896)
Q Consensus 307 ~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~ 357 (896)
.+++.++++++....+.+.+... -.+.+..++..++|.|..+..
T Consensus 146 ~~~~~~~~~~~~~~~l~~~~~~~-------~~~~~~~l~~~~~g~~~~a~~ 189 (313)
T PRK05564 146 IYKLNRLSKEEIEKFISYKYNDI-------KEEEKKSAIAFSDGIPGKVEK 189 (313)
T ss_pred eeeCCCcCHHHHHHHHHHHhcCC-------CHHHHHHHHHHcCCCHHHHHH
Confidence 89999999999988887654311 134467889999999876543
No 60
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.46 E-value=3.2e-07 Score=93.27 Aligned_cols=92 Identities=18% Similarity=0.168 Sum_probs=63.4
Q ss_pred CCCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCc--cCHHHHHHHH-----HHhcCCCCccccccCHHH
Q 002657 173 EPAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKD--LRLENIQEII-----GGKIGLMNESWKSKSLQE 245 (896)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i-----~~~l~~~~~~~~~~~~~~ 245 (896)
.....++|+|++|+|||||++.+++.. . ..+|+.++|+.+.++ .++.++++.+ +.+++.+... .......
T Consensus 14 ~~Gqr~~I~G~~G~GKTTLlr~I~n~l-~-~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~-~~~~~~~ 90 (249)
T cd01128 14 GKGQRGLIVAPPKAGKTTLLQSIANAI-T-KNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPER-HVQVAEM 90 (249)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcc-c-cccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHH-HHHHHHH
Confidence 456789999999999999999999987 3 348999999998777 7899999999 3333321100 0000111
Q ss_pred HHHHHHHH-hCCceEEEEEecCC
Q 002657 246 KSLDIFKI-LGEKKFVLLLDDLW 267 (896)
Q Consensus 246 ~~~~l~~~-l~~kr~LlVlDdv~ 267 (896)
.......+ -.+++.++++|++.
T Consensus 91 ~~~~a~~~~~~G~~vll~iDei~ 113 (249)
T cd01128 91 VLEKAKRLVEHGKDVVILLDSIT 113 (249)
T ss_pred HHHHHHHHHHCCCCEEEEEECHH
Confidence 11222222 35899999999994
No 61
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=7.9e-06 Score=88.20 Aligned_cols=199 Identities=15% Similarity=0.200 Sum_probs=126.6
Q ss_pred ccchHHHHHHHHHHhcc----CCCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHhc
Q 002657 156 VVGLQSQLEQVWRCLVE----EPAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDLRLENIQEIIGGKI 231 (896)
Q Consensus 156 ~vGr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 231 (896)
+.+|+.+++++...|.. ....-+.|+|.+|+|||+.++.+.+.........+ +++|.+....+..+++..|+.++
T Consensus 19 l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~-~~yINc~~~~t~~~i~~~i~~~~ 97 (366)
T COG1474 19 LPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVE-VVYINCLELRTPYQVLSKILNKL 97 (366)
T ss_pred ccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCc-eEEEeeeeCCCHHHHHHHHHHHc
Confidence 78999999999988864 23334899999999999999999998832212222 78999999999999999999999
Q ss_pred CCCCccccccCHHHHHHHHHHHhC--CceEEEEEecCCCcccc--ccccccCCCCCCCCcEE--EEecCCHHHHh-----
Q 002657 232 GLMNESWKSKSLQEKSLDIFKILG--EKKFVLLLDDLWQRVDL--TKVGVPLPSPQSSASKV--VFTTRSEEICG----- 300 (896)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~~~--~~l~~~~~~~~~~~s~i--ivTtR~~~v~~----- 300 (896)
+.... ......+....+.+.+. ++.+++|||+++....- +.+...+.......++| |..+-+.....
T Consensus 98 ~~~p~--~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ld~r 175 (366)
T COG1474 98 GKVPL--TGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYLDPR 175 (366)
T ss_pred CCCCC--CCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHHhhhh
Confidence 63221 34556667777777775 58899999999653222 22222222111223443 33444433322
Q ss_pred ---hhccCcceeccCCChHhHHHHHHHHhcCcc--cCCCCChHHHHHHHHHHhC-CCchHHHHH
Q 002657 301 ---LMEAQKKFKVACLSDKDAWELFCHKVGEET--LNNHPDIPELAQTVAKECG-GMPLALITI 358 (896)
Q Consensus 301 ---~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~--~~~~~~~~~~~~~i~~~~~-GlPlai~~~ 358 (896)
.++. ..+...|.+.+|-..++..++...- ...+++.-++...++..-+ .--.||..+
T Consensus 176 v~s~l~~-~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidil 238 (366)
T COG1474 176 VKSSLGP-SEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDIL 238 (366)
T ss_pred hhhccCc-ceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHH
Confidence 2222 2378899999999999998874321 1223333344444444444 445555444
No 62
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.42 E-value=1.5e-06 Score=82.22 Aligned_cols=124 Identities=24% Similarity=0.202 Sum_probs=74.0
Q ss_pred cchHHHHHHHHHHhccCCCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHhcCCCCc
Q 002657 157 VGLQSQLEQVWRCLVEEPAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDLRLENIQEIIGGKIGLMNE 236 (896)
Q Consensus 157 vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~ 236 (896)
+|++..+..+...+.....+.+.|+|++|+|||++++.+++... ..-..++++..............+...
T Consensus 1 ~~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~------ 71 (151)
T cd00009 1 VGQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELF---RPGAPFLYLNASDLLEGLVVAELFGHF------ 71 (151)
T ss_pred CchHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhh---cCCCCeEEEehhhhhhhhHHHHHhhhh------
Confidence 47888999999998877778899999999999999999999872 222345666554433222211111000
Q ss_pred cccccCHHHHHHHHHHHhCCceEEEEEecCCCc-----cccccccccCCCC--CCCCcEEEEecCCHH
Q 002657 237 SWKSKSLQEKSLDIFKILGEKKFVLLLDDLWQR-----VDLTKVGVPLPSP--QSSASKVVFTTRSEE 297 (896)
Q Consensus 237 ~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~-----~~~~~l~~~~~~~--~~~~s~iivTtR~~~ 297 (896)
............++.++|+||++.. ..+......+... ...+..||+||....
T Consensus 72 --------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 --------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred --------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0011112223456789999999743 1122222222100 135778888888653
No 63
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=1.3e-08 Score=100.36 Aligned_cols=184 Identities=22% Similarity=0.205 Sum_probs=105.6
Q ss_pred CCCEEeccCCCcc--ccchhhhcCCCCCEeeccccccccCCcHHHHhccccccEEEeeccCCCcccccccccccccCccc
Q 002657 585 SLQHLDLSLTNIE--KLSGELKALVNLKCLNLEYTWSLVTIPQQLIASFLRLHVLRMFGVGDDAFEVASEDSVLFDGGEF 662 (896)
Q Consensus 585 ~L~~L~Ls~~~i~--~lp~~l~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 662 (896)
.||+||||++.|+ .+-.-+..+.+|+.|.|.|+..-..+-.. +++-.+|+.|+++.|+..+ ...
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~-iAkN~~L~~lnlsm~sG~t-------------~n~ 251 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNT-IAKNSNLVRLNLSMCSGFT-------------ENA 251 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHH-Hhccccceeeccccccccc-------------hhH
Confidence 5899999998876 45555678888888888888332233332 6777788888888765432 122
Q ss_pred cHHHhcCCCCCcEEEEEecCchhhhhhhccccccccceeeeeeecCCCCeeeeccccccCCcCeEeeccCCCCceEEecC
Q 002657 663 LVEELLGLNHLEVLSLTLRSPYALQSFLTSHKLQCCTQALFLQYFKDSTSLVVSSLANLKRLNVLRIADCEKLEELKIDY 742 (896)
Q Consensus 663 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~l~~~~ 742 (896)
.-.-+.+++.|..|+++++....-.. .+.+..+ -++|..|+|+||...- ..+.
T Consensus 252 ~~ll~~scs~L~~LNlsWc~l~~~~V-----------------------tv~V~hi--se~l~~LNlsG~rrnl--~~sh 304 (419)
T KOG2120|consen 252 LQLLLSSCSRLDELNLSWCFLFTEKV-----------------------TVAVAHI--SETLTQLNLSGYRRNL--QKSH 304 (419)
T ss_pred HHHHHHhhhhHhhcCchHhhccchhh-----------------------hHHHhhh--chhhhhhhhhhhHhhh--hhhH
Confidence 33345566666666666554221100 0000112 1467777777764321 1110
Q ss_pred CCccccccCCCccEEEeccCCCCCC--CccccCCCCCCEEeEecCcccchhcccCcccCCCCCcCccccEeeccCC
Q 002657 743 TGEIQHFGFRSLCKVEIARCQKLKD--LTFLVFAPNLESIEVKSCLALEEIVSDVPEAMGNLNLFAKLQYLELLGL 816 (896)
Q Consensus 743 ~~~~~~~~~~~L~~L~L~~c~~l~~--l~~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~ 816 (896)
.. .-...+|+|..|+|++|..++. +..+.+++.|++|.++.|+.+.--. .-.+...|+|.+|++.+|
T Consensus 305 ~~-tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~------~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 305 LS-TLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPET------LLELNSKPSLVYLDVFGC 373 (419)
T ss_pred HH-HHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHH------eeeeccCcceEEEEeccc
Confidence 00 1112477777778877766665 2235567777888877776543210 124455677777777665
No 64
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.40 E-value=3.3e-06 Score=98.17 Aligned_cols=178 Identities=17% Similarity=0.174 Sum_probs=107.7
Q ss_pred ccchHHHHHHHHHHhccCCCeE-EEEEcCCCchHHHHHHHHHhhhccCCCC-------------------CCeEEEEEeC
Q 002657 156 VVGLQSQLEQVWRCLVEEPAGI-VGLYGMGGVGKTTLLTHINNKFLQVPND-------------------FDCVIWVVVS 215 (896)
Q Consensus 156 ~vGr~~~~~~l~~~L~~~~~~v-i~I~G~gGiGKTtLa~~v~~~~~~~~~~-------------------f~~~~wv~~~ 215 (896)
+||.+..++.|.+++..++..- +.++|+.|+||||+|+.+++.... ... |.-++++..+
T Consensus 18 IIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnc-e~~~~~~pCg~C~sC~~i~~g~~~DviEidAa 96 (944)
T PRK14949 18 MVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNC-EQGVTATPCGVCSSCVEIAQGRFVDLIEVDAA 96 (944)
T ss_pred hcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccC-ccCCCCCCCCCchHHHHHhcCCCceEEEeccc
Confidence 8999999999999998876655 479999999999999999988621 111 1111111111
Q ss_pred CccCHHHHHHHHHHhcCCCCccccccCHHHHHHHHHH-HhCCceEEEEEecCCCc--cccccccccCCCCCCCCcEEEEe
Q 002657 216 KDLRLENIQEIIGGKIGLMNESWKSKSLQEKSLDIFK-ILGEKKFVLLLDDLWQR--VDLTKVGVPLPSPQSSASKVVFT 292 (896)
Q Consensus 216 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~~s~iivT 292 (896)
....+. ...++...+.. -..+++-++|||++... .....+...+- ......++|++
T Consensus 97 s~~kVD--------------------dIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLE-EPP~~vrFILa 155 (944)
T PRK14949 97 SRTKVD--------------------DTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLE-EPPEHVKFLLA 155 (944)
T ss_pred cccCHH--------------------HHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHh-ccCCCeEEEEE
Confidence 001111 11112211111 12366779999999643 34454444443 22334555555
Q ss_pred cCC-HHHH-hhhccCcceeccCCChHhHHHHHHHHhcCcccCCCCChHHHHHHHHHHhCCCchHHHHH
Q 002657 293 TRS-EEIC-GLMEAQKKFKVACLSDKDAWELFCHKVGEETLNNHPDIPELAQTVAKECGGMPLALITI 358 (896)
Q Consensus 293 tR~-~~v~-~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~ 358 (896)
|.+ ..+. ........|++++++.++..+.+.+.+...... --.+....|++.++|.|--+..+
T Consensus 156 TTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI~---~edeAL~lIA~~S~Gd~R~ALnL 220 (944)
T PRK14949 156 TTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQLP---FEAEALTLLAKAANGSMRDALSL 220 (944)
T ss_pred CCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHH
Confidence 544 4432 223345789999999999999998876543211 12456788999999988644433
No 65
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=1.9e-08 Score=99.16 Aligned_cols=183 Identities=22% Similarity=0.219 Sum_probs=124.5
Q ss_pred CCCcEEEccCCcccc--cccccccCCCCCCEEeccCCCcc-ccchhhhcCCCCCEeeccccccccCCcH-HHHhcccccc
Q 002657 560 PSLKVLSLSRNRRLT--NLQLGISKLVSLQHLDLSLTNIE-KLSGELKALVNLKCLNLEYTWSLVTIPQ-QLIASFLRLH 635 (896)
Q Consensus 560 ~~L~~L~Ls~~~~i~--~lp~~i~~L~~L~~L~Ls~~~i~-~lp~~l~~L~~L~~L~L~~~~~l~~lp~-~~i~~l~~L~ 635 (896)
..|++||||+. .|+ .+..-++.+.+|+.|.|.++.+. .+-..+.+=.+|+.|+|+.|..+++... -++.+|+.|.
T Consensus 185 sRlq~lDLS~s-~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~ 263 (419)
T KOG2120|consen 185 SRLQHLDLSNS-VITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLD 263 (419)
T ss_pred hhhHHhhcchh-heeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHh
Confidence 36999999998 776 34556778999999999999886 5566788889999999999988776542 2468999999
Q ss_pred EEEeeccCCCcccccccccccccCccccHHHhcCC-CCCcEEEEEecCchhhhhhhccccccccceeeeeeecCCCCeee
Q 002657 636 VLRMFGVGDDAFEVASEDSVLFDGGEFLVEELLGL-NHLEVLSLTLRSPYALQSFLTSHKLQCCTQALFLQYFKDSTSLV 714 (896)
Q Consensus 636 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~ 714 (896)
.|+++.|....- ..-...... ++|..|+++++...- . ...
T Consensus 264 ~LNlsWc~l~~~--------------~Vtv~V~hise~l~~LNlsG~rrnl-----------------~--------~sh 304 (419)
T KOG2120|consen 264 ELNLSWCFLFTE--------------KVTVAVAHISETLTQLNLSGYRRNL-----------------Q--------KSH 304 (419)
T ss_pred hcCchHhhccch--------------hhhHHHhhhchhhhhhhhhhhHhhh-----------------h--------hhH
Confidence 999998876531 111111111 455666666443110 0 001
Q ss_pred ecc-ccccCCcCeEeeccCCCCceEEecCCCccccccCCCccEEEeccCCCCCC--CccccCCCCCCEEeEecCcc
Q 002657 715 VSS-LANLKRLNVLRIADCEKLEELKIDYTGEIQHFGFRSLCKVEIARCQKLKD--LTFLVFAPNLESIEVKSCLA 787 (896)
Q Consensus 715 ~~~-l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~L~~L~L~~c~~l~~--l~~l~~l~~L~~L~L~~c~~ 787 (896)
+.. ...+|+|..|+|++|..++. +.+ .....|+.|++|.++.|..+.- +-.+...|+|.+|++.+|-.
T Consensus 305 ~~tL~~rcp~l~~LDLSD~v~l~~---~~~--~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~vs 375 (419)
T KOG2120|consen 305 LSTLVRRCPNLVHLDLSDSVMLKN---DCF--QEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCVS 375 (419)
T ss_pred HHHHHHhCCceeeeccccccccCc---hHH--HHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccccC
Confidence 111 24578999999999887763 211 1123588999999999965432 23467789999999998743
No 66
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.38 E-value=4.8e-06 Score=91.01 Aligned_cols=191 Identities=12% Similarity=0.098 Sum_probs=107.5
Q ss_pred ccchHHHHHHHHHHhccCCCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCC-eEEEEEeCCccCHHHHHHHHHH-----
Q 002657 156 VVGLQSQLEQVWRCLVEEPAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFD-CVIWVVVSKDLRLENIQEIIGG----- 229 (896)
Q Consensus 156 ~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i~~----- 229 (896)
++|++..++.+..++..+..+.+.++|++|+||||+|+.+++... ...+. ..+.+++++-.+ .....+..
T Consensus 17 ~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~--~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~ 92 (337)
T PRK12402 17 ILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELY--GDPWENNFTEFNVADFFD--QGKKYLVEDPRFA 92 (337)
T ss_pred hcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhc--CcccccceEEechhhhhh--cchhhhhcCcchh
Confidence 899999999999999887767788999999999999999998762 22222 234444332110 00000000
Q ss_pred -hcCCCCccccccCHHHHHHHHH-HH---h--CCceEEEEEecCCCcc--ccccccccCCCCCCCCcEEEEecCCHH-HH
Q 002657 230 -KIGLMNESWKSKSLQEKSLDIF-KI---L--GEKKFVLLLDDLWQRV--DLTKVGVPLPSPQSSASKVVFTTRSEE-IC 299 (896)
Q Consensus 230 -~l~~~~~~~~~~~~~~~~~~l~-~~---l--~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~~s~iivTtR~~~-v~ 299 (896)
.++... . ...........+. .. . .+.+-+||+||+.... ....+...+. .....+++|+||.... +.
T Consensus 93 ~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le-~~~~~~~~Il~~~~~~~~~ 169 (337)
T PRK12402 93 HFLGTDK-R-IRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIME-QYSRTCRFIIATRQPSKLI 169 (337)
T ss_pred hhhhhhh-h-hccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHH-hccCCCeEEEEeCChhhCc
Confidence 000000 0 0000111111111 11 1 1334589999996432 1223333332 2234567777775432 21
Q ss_pred h-hhccCcceeccCCChHhHHHHHHHHhcCcccCCCCChHHHHHHHHHHhCCCchHHH
Q 002657 300 G-LMEAQKKFKVACLSDKDAWELFCHKVGEETLNNHPDIPELAQTVAKECGGMPLALI 356 (896)
Q Consensus 300 ~-~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~ 356 (896)
. .......+.+.+++.++...++.+.+....... -.+....+++.++|.+-.+.
T Consensus 170 ~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~~---~~~al~~l~~~~~gdlr~l~ 224 (337)
T PRK12402 170 PPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVDY---DDDGLELIAYYAGGDLRKAI 224 (337)
T ss_pred hhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHH
Confidence 1 112345788999999999999988765443221 25668889999988765553
No 67
>PLN03150 hypothetical protein; Provisional
Probab=98.37 E-value=9e-07 Score=103.72 Aligned_cols=106 Identities=21% Similarity=0.277 Sum_probs=83.3
Q ss_pred CccEEecccccccccchhhhccCCCCcEEEccCCcccc-cccccccCCCCCCEEeccCCCcc-ccchhhhcCCCCCEeec
Q 002657 537 HLLTLFLNSNELKIITNDFFQFMPSLKVLSLSRNRRLT-NLQLGISKLVSLQHLDLSLTNIE-KLSGELKALVNLKCLNL 614 (896)
Q Consensus 537 ~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~Ls~~~~i~-~lp~~i~~L~~L~~L~Ls~~~i~-~lp~~l~~L~~L~~L~L 614 (896)
.++.|+|++|.+....+..++.+++|+.|+|++| .+. .+|..++.+++|++|+|++|++. .+|..+++|++|++|+|
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N-~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGN-SIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL 497 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCC-cccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence 4778888888887555555888999999999998 554 78888999999999999999887 68888999999999999
Q ss_pred cccccccCCcHHHHhc-cccccEEEeeccCC
Q 002657 615 EYTWSLVTIPQQLIAS-FLRLHVLRMFGVGD 644 (896)
Q Consensus 615 ~~~~~l~~lp~~~i~~-l~~L~~L~l~~~~~ 644 (896)
++|.....+|.. ++. +.++..+++.+|..
T Consensus 498 s~N~l~g~iP~~-l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 498 NGNSLSGRVPAA-LGGRLLHRASFNFTDNAG 527 (623)
T ss_pred cCCcccccCChH-HhhccccCceEEecCCcc
Confidence 998655678876 443 34666777776543
No 68
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.37 E-value=5.1e-06 Score=93.71 Aligned_cols=188 Identities=12% Similarity=0.094 Sum_probs=107.4
Q ss_pred ccchHHHHHHHHHHhccCCC-eEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHhcCCC
Q 002657 156 VVGLQSQLEQVWRCLVEEPA-GIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDLRLENIQEIIGGKIGLM 234 (896)
Q Consensus 156 ~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 234 (896)
++|.+...+.|.+++..+.. ..+.++|+.|+||||+|+.+++... -.. ++.. ........-+.+...-...
T Consensus 17 VIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~Ln-C~~------~~~~-~pCg~C~sC~~I~~g~hpD 88 (702)
T PRK14960 17 LVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLN-CET------GVTS-TPCEVCATCKAVNEGRFID 88 (702)
T ss_pred hcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhC-CCc------CCCC-CCCccCHHHHHHhcCCCCc
Confidence 89999999999999987754 5678999999999999999988762 111 1000 0000001111111100000
Q ss_pred C---ccccccCHHHHHHHHHHH-----hCCceEEEEEecCCCc--cccccccccCCCCCCCCcEEEEecCCHH-HH-hhh
Q 002657 235 N---ESWKSKSLQEKSLDIFKI-----LGEKKFVLLLDDLWQR--VDLTKVGVPLPSPQSSASKVVFTTRSEE-IC-GLM 302 (896)
Q Consensus 235 ~---~~~~~~~~~~~~~~l~~~-----l~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~~s~iivTtR~~~-v~-~~~ 302 (896)
. +.......++... +... ..+++-++|+|++... .....+...+. ....+.++|++|.+.. +. ...
T Consensus 89 viEIDAAs~~~VddIRe-li~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLE-EPP~~v~FILaTtd~~kIp~TIl 166 (702)
T PRK14960 89 LIEIDAASRTKVEDTRE-LLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLE-EPPEHVKFLFATTDPQKLPITVI 166 (702)
T ss_pred eEEecccccCCHHHHHH-HHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHh-cCCCCcEEEEEECChHhhhHHHH
Confidence 0 0000011111111 1111 1356668999999743 33444444443 3334566777666543 21 223
Q ss_pred ccCcceeccCCChHhHHHHHHHHhcCcccCCCCChHHHHHHHHHHhCCCchHHH
Q 002657 303 EAQKKFKVACLSDKDAWELFCHKVGEETLNNHPDIPELAQTVAKECGGMPLALI 356 (896)
Q Consensus 303 ~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~ 356 (896)
+....+++++++.++..+.+.+.+....... -.+....|++.++|.+-.+.
T Consensus 167 SRCq~feFkpLs~eEI~k~L~~Il~kEgI~i---d~eAL~~IA~~S~GdLRdAL 217 (702)
T PRK14960 167 SRCLQFTLRPLAVDEITKHLGAILEKEQIAA---DQDAIWQIAESAQGSLRDAL 217 (702)
T ss_pred HhhheeeccCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHH
Confidence 4457899999999999999988775543221 24557889999999775443
No 69
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.37 E-value=9.5e-06 Score=88.70 Aligned_cols=187 Identities=16% Similarity=0.161 Sum_probs=105.0
Q ss_pred ccchHHHHHHHHHHhccCCC-eEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHhcCCC
Q 002657 156 VVGLQSQLEQVWRCLVEEPA-GIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDLRLENIQEIIGGKIGLM 234 (896)
Q Consensus 156 ~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 234 (896)
++|.+..++.+.+.+..++. ..+.++|+.|+||||+|+.+++... -...... .+......-.++.......
T Consensus 18 iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~-c~~~~~~-------~pc~~c~~c~~~~~~~~~d 89 (363)
T PRK14961 18 IIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLN-CQNGITS-------NPCRKCIICKEIEKGLCLD 89 (363)
T ss_pred ccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhc-CCCCCCC-------CCCCCCHHHHHHhcCCCCc
Confidence 89999999999999887654 4578999999999999999998762 1110000 0000000001111100000
Q ss_pred C---ccccccCHHHHHHHHHHHh-----CCceEEEEEecCCCcc--ccccccccCCCCCCCCcEEEEecCCH-HHHh-hh
Q 002657 235 N---ESWKSKSLQEKSLDIFKIL-----GEKKFVLLLDDLWQRV--DLTKVGVPLPSPQSSASKVVFTTRSE-EICG-LM 302 (896)
Q Consensus 235 ~---~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~~s~iivTtR~~-~v~~-~~ 302 (896)
. +.......++ ...+.+.+ .+++-++|+|++.... .+..+...+. ......++|++|.+. .+.. ..
T Consensus 90 ~~~~~~~~~~~v~~-ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lE-e~~~~~~fIl~t~~~~~l~~tI~ 167 (363)
T PRK14961 90 LIEIDAASRTKVEE-MREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLE-EPPQHIKFILATTDVEKIPKTIL 167 (363)
T ss_pred eEEecccccCCHHH-HHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHh-cCCCCeEEEEEcCChHhhhHHHH
Confidence 0 0000011111 11222221 2345689999997543 3444544443 334456667666543 2322 22
Q ss_pred ccCcceeccCCChHhHHHHHHHHhcCcccCCCCChHHHHHHHHHHhCCCchHH
Q 002657 303 EAQKKFKVACLSDKDAWELFCHKVGEETLNNHPDIPELAQTVAKECGGMPLAL 355 (896)
Q Consensus 303 ~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai 355 (896)
+....+++.+++.++..+.+.+.+...... --++.+..|++.++|.|-.+
T Consensus 168 SRc~~~~~~~l~~~el~~~L~~~~~~~g~~---i~~~al~~ia~~s~G~~R~a 217 (363)
T PRK14961 168 SRCLQFKLKIISEEKIFNFLKYILIKESID---TDEYALKLIAYHAHGSMRDA 217 (363)
T ss_pred hhceEEeCCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHH
Confidence 334689999999999999888866543211 12456788999999988644
No 70
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.36 E-value=3.3e-06 Score=86.22 Aligned_cols=170 Identities=14% Similarity=0.129 Sum_probs=100.7
Q ss_pred ccchHH-HHHHHHHHhccCCCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHhcCCC
Q 002657 156 VVGLQS-QLEQVWRCLVEEPAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDLRLENIQEIIGGKIGLM 234 (896)
Q Consensus 156 ~vGr~~-~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 234 (896)
++|... .+..+.++......+.+.|+|+.|+|||+|++.+++... ..-..+.|+.+.....
T Consensus 25 ~~~~n~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~---~~~~~v~y~~~~~~~~--------------- 86 (235)
T PRK08084 25 YPGDNDSLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELS---QRGRAVGYVPLDKRAW--------------- 86 (235)
T ss_pred ccCccHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHH---hCCCeEEEEEHHHHhh---------------
Confidence 346333 334444444444557899999999999999999998762 2223456665532100
Q ss_pred CccccccCHHHHHHHHHHHhCCceEEEEEecCCCc---ccccccc-ccCCCCCCCC-cEEEEecCCH---------HHHh
Q 002657 235 NESWKSKSLQEKSLDIFKILGEKKFVLLLDDLWQR---VDLTKVG-VPLPSPQSSA-SKVVFTTRSE---------EICG 300 (896)
Q Consensus 235 ~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~---~~~~~l~-~~~~~~~~~~-s~iivTtR~~---------~v~~ 300 (896)
...+ +.+.+.. --+|++||+... ..|+... ..+......| .++|+||+.. +..+
T Consensus 87 -------~~~~----~~~~~~~-~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~S 154 (235)
T PRK08084 87 -------FVPE----VLEGMEQ-LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLAS 154 (235)
T ss_pred -------hhHH----HHHHhhh-CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHH
Confidence 0001 1111111 137899999542 2343221 1111011123 4799999854 3345
Q ss_pred hhccCcceeccCCChHhHHHHHHHHhcCcccCCCCChHHHHHHHHHHhCCCchHHHHH
Q 002657 301 LMEAQKKFKVACLSDKDAWELFCHKVGEETLNNHPDIPELAQTVAKECGGMPLALITI 358 (896)
Q Consensus 301 ~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~ 358 (896)
.+....+++++++++++-.+++.+++...... --+++..-|++.+.|..-++..+
T Consensus 155 Rl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~---l~~~v~~~L~~~~~~d~r~l~~~ 209 (235)
T PRK08084 155 RLDWGQIYKLQPLSDEEKLQALQLRARLRGFE---LPEDVGRFLLKRLDREMRTLFMT 209 (235)
T ss_pred HHhCCceeeecCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHhhcCCHHHHHHH
Confidence 55667899999999999999998866543222 22677888888888766555433
No 71
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.34 E-value=5.9e-08 Score=98.35 Aligned_cols=216 Identities=19% Similarity=0.116 Sum_probs=104.8
Q ss_pred CCCCCCccEEecccccccc----cchhhhccCCCCcEEEccCCc---ccccccc-------cccCCCCCCEEeccCCCcc
Q 002657 532 IPKCPHLLTLFLNSNELKI----ITNDFFQFMPSLKVLSLSRNR---RLTNLQL-------GISKLVSLQHLDLSLTNIE 597 (896)
Q Consensus 532 ~~~~~~L~~L~l~~n~l~~----i~~~~~~~l~~L~~L~Ls~~~---~i~~lp~-------~i~~L~~L~~L~Ls~~~i~ 597 (896)
...+..+..|+|++|.+.. .....+.+-++|+..++|+-. ...++|+ .+-.+++|++||||.|-+.
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G 105 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG 105 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence 3445556666666664321 112224555666666666540 1112332 2334556777777766443
Q ss_pred -----ccchhhhcCCCCCEeeccccccccCCcHHH-------------HhccccccEEEeeccCCCcccccccccccccC
Q 002657 598 -----KLSGELKALVNLKCLNLEYTWSLVTIPQQL-------------IASFLRLHVLRMFGVGDDAFEVASEDSVLFDG 659 (896)
Q Consensus 598 -----~lp~~l~~L~~L~~L~L~~~~~l~~lp~~~-------------i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 659 (896)
.+-.-+.+++.|++|.|.+| .+.....+. ++.-++||.+....|...+..
T Consensus 106 ~~g~~~l~~ll~s~~~L~eL~L~N~-Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~g----------- 173 (382)
T KOG1909|consen 106 PKGIRGLEELLSSCTDLEELYLNNC-GLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGG----------- 173 (382)
T ss_pred ccchHHHHHHHHhccCHHHHhhhcC-CCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccccccc-----------
Confidence 22223456677777777777 443222111 223345666655555443210
Q ss_pred ccccHHHhcCCCCCcEEEEEecCchhhhhhhccccccccceeeeeeecCCCCeeeeccccccCCcCeEeeccCCCCceEE
Q 002657 660 GEFLVEELLGLNHLEVLSLTLRSPYALQSFLTSHKLQCCTQALFLQYFKDSTSLVVSSLANLKRLNVLRIADCEKLEELK 739 (896)
Q Consensus 660 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~l~ 739 (896)
-......+..++.|+.+.++.+.+..- .. ......+..+++|+.|+|.+|.....-
T Consensus 174 a~~~A~~~~~~~~leevr~~qN~I~~e----------------------G~-~al~eal~~~~~LevLdl~DNtft~eg- 229 (382)
T KOG1909|consen 174 ATALAEAFQSHPTLEEVRLSQNGIRPE----------------------GV-TALAEALEHCPHLEVLDLRDNTFTLEG- 229 (382)
T ss_pred HHHHHHHHHhccccceEEEecccccCc----------------------hh-HHHHHHHHhCCcceeeecccchhhhHH-
Confidence 122334455556666666654443210 00 011134666788888888876532211
Q ss_pred ecCCCccccccCCCccEEEeccCCCCCCCc------c-ccCCCCCCEEeEecC
Q 002657 740 IDYTGEIQHFGFRSLCKVEIARCQKLKDLT------F-LVFAPNLESIEVKSC 785 (896)
Q Consensus 740 ~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~------~-l~~l~~L~~L~L~~c 785 (896)
....+ ...+.+++|+.|++++| .+++=- . -...|+|+.|.+.+|
T Consensus 230 s~~La-kaL~s~~~L~El~l~dc-ll~~~Ga~a~~~al~~~~p~L~vl~l~gN 280 (382)
T KOG1909|consen 230 SVALA-KALSSWPHLRELNLGDC-LLENEGAIAFVDALKESAPSLEVLELAGN 280 (382)
T ss_pred HHHHH-HHhcccchheeeccccc-ccccccHHHHHHHHhccCCCCceeccCcc
Confidence 00000 11234667778888877 444311 1 123567777777664
No 72
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.33 E-value=1.8e-07 Score=94.88 Aligned_cols=237 Identities=20% Similarity=0.162 Sum_probs=144.9
Q ss_pred CcccceEEEeecccccc-----c-ccCCCCCCccEEecccc----cccccchh------hhccCCCCcEEEccCCcccc-
Q 002657 512 GWENVSRLSLMQNRIKN-----L-SEIPKCPHLLTLFLNSN----ELKIITND------FFQFMPSLKVLSLSRNRRLT- 574 (896)
Q Consensus 512 ~~~~lr~L~l~~~~~~~-----l-~~~~~~~~L~~L~l~~n----~l~~i~~~------~~~~l~~L~~L~Ls~~~~i~- 574 (896)
....+..|.+++|.+.. + +.+.+-+.|+..++++- ....+|+. .+-.++.|++||||.| .+.
T Consensus 28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDN-A~G~ 106 (382)
T KOG1909|consen 28 PMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDN-AFGP 106 (382)
T ss_pred ccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccc-ccCc
Confidence 34688999999998753 1 23566678888888865 12233332 2456779999999999 443
Q ss_pred cc----cccccCCCCCCEEeccCCCccccch--------------hhhcCCCCCEeeccccccccCCcHH----HHhccc
Q 002657 575 NL----QLGISKLVSLQHLDLSLTNIEKLSG--------------ELKALVNLKCLNLEYTWSLVTIPQQ----LIASFL 632 (896)
Q Consensus 575 ~l----p~~i~~L~~L~~L~Ls~~~i~~lp~--------------~l~~L~~L~~L~L~~~~~l~~lp~~----~i~~l~ 632 (896)
.- -.-+.++..|++|.|.+|.+...-. .+++-++|+++....| .+..-+.. ++...+
T Consensus 107 ~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN-rlen~ga~~~A~~~~~~~ 185 (382)
T KOG1909|consen 107 KGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN-RLENGGATALAEAFQSHP 185 (382)
T ss_pred cchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc-ccccccHHHHHHHHHhcc
Confidence 22 2346678899999999998753321 2345678999999988 67665532 356778
Q ss_pred cccEEEeeccCCCcccccccccccccCccccHHHhcCCCCCcEEEEEecCchhhhhhhccccccccceeeeeeecCCCCe
Q 002657 633 RLHVLRMFGVGDDAFEVASEDSVLFDGGEFLVEELLGLNHLEVLSLTLRSPYALQSFLTSHKLQCCTQALFLQYFKDSTS 712 (896)
Q Consensus 633 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~ 712 (896)
.|+.+.+..|.+.. .+.......+..+++|+.|++..|-...-.+..-
T Consensus 186 ~leevr~~qN~I~~-----------eG~~al~eal~~~~~LevLdl~DNtft~egs~~L--------------------- 233 (382)
T KOG1909|consen 186 TLEEVRLSQNGIRP-----------EGVTALAEALEHCPHLEVLDLRDNTFTLEGSVAL--------------------- 233 (382)
T ss_pred ccceEEEecccccC-----------chhHHHHHHHHhCCcceeeecccchhhhHHHHHH---------------------
Confidence 99999998876652 1123566788999999999998775433111100
Q ss_pred eeeccccccCCcCeEeeccCCCCceEEecCCCccccccCCCccEEEeccCCCCCC------CccccCCCCCCEEeEecCc
Q 002657 713 LVVSSLANLKRLNVLRIADCEKLEELKIDYTGEIQHFGFRSLCKVEIARCQKLKD------LTFLVFAPNLESIEVKSCL 786 (896)
Q Consensus 713 ~~~~~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~L~~L~L~~c~~l~~------l~~l~~l~~L~~L~L~~c~ 786 (896)
-..++.+++|+.|++++|.--.. ....+........|+|+.|.+.+| .++. ...+...|.|+.|+|++|.
T Consensus 234 --akaL~s~~~L~El~l~dcll~~~-Ga~a~~~al~~~~p~L~vl~l~gN-eIt~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 234 --AKALSSWPHLRELNLGDCLLENE-GAIAFVDALKESAPSLEVLELAGN-EITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred --HHHhcccchheeecccccccccc-cHHHHHHHHhccCCCCceeccCcc-hhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 02244455677777766632110 000000011123667777777766 2322 0123345667777777653
No 73
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.32 E-value=1.2e-05 Score=90.69 Aligned_cols=194 Identities=18% Similarity=0.118 Sum_probs=110.9
Q ss_pred ccchHHHHHHHHHHhccCCCe-EEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHhcCCC
Q 002657 156 VVGLQSQLEQVWRCLVEEPAG-IVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDLRLENIQEIIGGKIGLM 234 (896)
Q Consensus 156 ~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 234 (896)
++|.+..++.|..++..+... .+.++|++|+||||+|+.+++... -.+.+...+|.|.+... +..-.+.-...++..
T Consensus 16 vvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~-c~~~~~~~cg~C~sc~~-i~~~~h~dv~el~~~ 93 (504)
T PRK14963 16 VVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVN-CSGEDPKPCGECESCLA-VRRGAHPDVLEIDAA 93 (504)
T ss_pred hcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHh-ccCCCCCCCCcChhhHH-HhcCCCCceEEeccc
Confidence 799999999999998887654 558999999999999999998872 11222223343322100 000000000000100
Q ss_pred CccccccCHHHHHHHHHHHh-----CCceEEEEEecCCCc--cccccccccCCCCCCCCcEEEEecC-CHHHHh-hhccC
Q 002657 235 NESWKSKSLQEKSLDIFKIL-----GEKKFVLLLDDLWQR--VDLTKVGVPLPSPQSSASKVVFTTR-SEEICG-LMEAQ 305 (896)
Q Consensus 235 ~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~~s~iivTtR-~~~v~~-~~~~~ 305 (896)
.....+. +..+.+.+ .+++-++|+|+++.. ..+..+...+. .......+|++|. ...+.. .....
T Consensus 94 ----~~~~vd~-iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LE-ep~~~t~~Il~t~~~~kl~~~I~SRc 167 (504)
T PRK14963 94 ----SNNSVED-VRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLE-EPPEHVIFILATTEPEKMPPTILSRT 167 (504)
T ss_pred ----ccCCHHH-HHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHH-hCCCCEEEEEEcCChhhCChHHhcce
Confidence 0111111 11122222 245668999999743 33555554544 2233445555554 333322 22335
Q ss_pred cceeccCCChHhHHHHHHHHhcCcccCCCCChHHHHHHHHHHhCCCchHH-HHHHH
Q 002657 306 KKFKVACLSDKDAWELFCHKVGEETLNNHPDIPELAQTVAKECGGMPLAL-ITIGR 360 (896)
Q Consensus 306 ~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai-~~~~~ 360 (896)
..+++.+++.++..+.+.+.+....... -.+....|++.++|.+--+ ..+-.
T Consensus 168 ~~~~f~~ls~~el~~~L~~i~~~egi~i---~~~Al~~ia~~s~GdlR~aln~Lek 220 (504)
T PRK14963 168 QHFRFRRLTEEEIAGKLRRLLEAEGREA---EPEALQLVARLADGAMRDAESLLER 220 (504)
T ss_pred EEEEecCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 6799999999999999998875543221 2456788999999988544 43333
No 74
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.32 E-value=1e-05 Score=91.19 Aligned_cols=192 Identities=15% Similarity=0.136 Sum_probs=107.8
Q ss_pred ccchHHHHHHHHHHhccCCCe-EEEEEcCCCchHHHHHHHHHhhhccCCC--CCCeEEEEEeCCccCHHHHHHHHHHh--
Q 002657 156 VVGLQSQLEQVWRCLVEEPAG-IVGLYGMGGVGKTTLLTHINNKFLQVPN--DFDCVIWVVVSKDLRLENIQEIIGGK-- 230 (896)
Q Consensus 156 ~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~--~f~~~~wv~~~~~~~~~~~~~~i~~~-- 230 (896)
+||.+..++.|.+++..++.. .+.++|..|+||||+|+.+.+....... ... .. +........-+.|...
T Consensus 18 VIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g-~~----~~PCG~C~sC~~I~aG~h 92 (700)
T PRK12323 18 LVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGG-IT----AQPCGQCRACTEIDAGRF 92 (700)
T ss_pred HcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcccccc-CC----CCCCcccHHHHHHHcCCC
Confidence 899999999999999887654 5688999999999999999987621000 000 00 0000000111111100
Q ss_pred ---cCCCCccccccCHHHHHHHHHHH----hCCceEEEEEecCCCc--cccccccccCCCCCCCCcEEE-EecCCHHHH-
Q 002657 231 ---IGLMNESWKSKSLQEKSLDIFKI----LGEKKFVLLLDDLWQR--VDLTKVGVPLPSPQSSASKVV-FTTRSEEIC- 299 (896)
Q Consensus 231 ---l~~~~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~~s~ii-vTtR~~~v~- 299 (896)
+.+... .....++....+... ..++.-++|||+++.. ..+..+...+. .-..+.++| +||....+.
T Consensus 93 pDviEIdAa--s~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLE-EPP~~v~FILaTtep~kLlp 169 (700)
T PRK12323 93 VDYIEMDAA--SNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLE-EPPEHVKFILATTDPQKIPV 169 (700)
T ss_pred CcceEeccc--ccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhc-cCCCCceEEEEeCChHhhhh
Confidence 000000 011122222211111 1355668999999743 34455544443 223344544 555544443
Q ss_pred hhhccCcceeccCCChHhHHHHHHHHhcCcccCCCCChHHHHHHHHHHhCCCchHHHHH
Q 002657 300 GLMEAQKKFKVACLSDKDAWELFCHKVGEETLNNHPDIPELAQTVAKECGGMPLALITI 358 (896)
Q Consensus 300 ~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~ 358 (896)
...+....+.++.++.++..+.+.+.+....... -.+....|++.++|.|.-...+
T Consensus 170 TIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~---d~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 170 TVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAH---EVNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred HHHHHHHhcccCCCChHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHH
Confidence 2334457899999999999999888765433111 1345688999999988655433
No 75
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.31 E-value=1.3e-06 Score=86.26 Aligned_cols=44 Identities=27% Similarity=0.401 Sum_probs=32.6
Q ss_pred ccchHHHHHHHHHHhc---cCCCeEEEEEcCCCchHHHHHHHHHhhh
Q 002657 156 VVGLQSQLEQVWRCLV---EEPAGIVGLYGMGGVGKTTLLTHINNKF 199 (896)
Q Consensus 156 ~vGr~~~~~~l~~~L~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (896)
||||+.+++++...+. ....+.+.|+|.+|+|||+|+++++...
T Consensus 2 fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~ 48 (185)
T PF13191_consen 2 FVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRL 48 (185)
T ss_dssp -TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 8999999999999993 2467899999999999999999999887
No 76
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.31 E-value=2.6e-07 Score=91.35 Aligned_cols=84 Identities=21% Similarity=0.247 Sum_probs=42.3
Q ss_pred CCCCCccEEecccccccccc--hhhhccCCCCcEEEccCCcccccccccc-cCCCCCCEEeccCCCcc--ccchhhhcCC
Q 002657 533 PKCPHLLTLFLNSNELKIIT--NDFFQFMPSLKVLSLSRNRRLTNLQLGI-SKLVSLQHLDLSLTNIE--KLSGELKALV 607 (896)
Q Consensus 533 ~~~~~L~~L~l~~n~l~~i~--~~~~~~l~~L~~L~Ls~~~~i~~lp~~i-~~L~~L~~L~Ls~~~i~--~lp~~l~~L~ 607 (896)
..++.++.|+|.+|.+++.. ..++.+|+.|++|+|+.| .+...-.++ ..+.+|++|-|.++.+. .....+..++
T Consensus 68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N-~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP 146 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCN-SLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLP 146 (418)
T ss_pred HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCC-cCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcch
Confidence 34566666666666554433 233456666666666666 332211111 23445666666655432 3333445555
Q ss_pred CCCEeecccc
Q 002657 608 NLKCLNLEYT 617 (896)
Q Consensus 608 ~L~~L~L~~~ 617 (896)
.++.|+++.|
T Consensus 147 ~vtelHmS~N 156 (418)
T KOG2982|consen 147 KVTELHMSDN 156 (418)
T ss_pred hhhhhhhccc
Confidence 5555555554
No 77
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.29 E-value=1.8e-05 Score=88.93 Aligned_cols=191 Identities=16% Similarity=0.115 Sum_probs=107.4
Q ss_pred ccchHHHHHHHHHHhccCCC-eEEEEEcCCCchHHHHHHHHHhhhccCCCCCCe-EEEEEeCCccCHHHHHHH---HHHh
Q 002657 156 VVGLQSQLEQVWRCLVEEPA-GIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDC-VIWVVVSKDLRLENIQEI---IGGK 230 (896)
Q Consensus 156 ~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~-~~wv~~~~~~~~~~~~~~---i~~~ 230 (896)
++|.+..+..|...+..+.. ..+.++|+.|+||||+|+.+++.... ...... ..+..+....+-..+... -...
T Consensus 23 liGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc-~~~~~~~~~~~~C~~C~~C~~i~~~~h~Dv~e 101 (507)
T PRK06645 23 LQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNC-SALITENTTIKTCEQCTNCISFNNHNHPDIIE 101 (507)
T ss_pred hcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcC-ccccccCcCcCCCCCChHHHHHhcCCCCcEEE
Confidence 79999999998888777654 57889999999999999999987621 111000 000000100000000000 0000
Q ss_pred cCCCCccccccCHHHHHHHHHHH----hCCceEEEEEecCCCc--cccccccccCCCCCCCCcEEEE-ecCCHHHHhh-h
Q 002657 231 IGLMNESWKSKSLQEKSLDIFKI----LGEKKFVLLLDDLWQR--VDLTKVGVPLPSPQSSASKVVF-TTRSEEICGL-M 302 (896)
Q Consensus 231 l~~~~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~~s~iiv-TtR~~~v~~~-~ 302 (896)
++.. .....++....+... ..+++-++|+|+++.. ..+..+...+. .....+.+|+ ||+...+... .
T Consensus 102 idaa----s~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LE-epp~~~vfI~aTte~~kI~~tI~ 176 (507)
T PRK06645 102 IDAA----SKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLE-EPPPHIIFIFATTEVQKIPATII 176 (507)
T ss_pred eecc----CCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHh-hcCCCEEEEEEeCChHHhhHHHH
Confidence 0000 111122222211111 2356678999999753 34666655554 3334555554 5555444332 2
Q ss_pred ccCcceeccCCChHhHHHHHHHHhcCcccCCCCChHHHHHHHHHHhCCCchHH
Q 002657 303 EAQKKFKVACLSDKDAWELFCHKVGEETLNNHPDIPELAQTVAKECGGMPLAL 355 (896)
Q Consensus 303 ~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai 355 (896)
.....+++.+++.++..+.+.+.+....... -.+....|++.++|.+--+
T Consensus 177 SRc~~~ef~~ls~~el~~~L~~i~~~egi~i---e~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 177 SRCQRYDLRRLSFEEIFKLLEYITKQENLKT---DIEALRIIAYKSEGSARDA 226 (507)
T ss_pred hcceEEEccCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHH
Confidence 3446799999999999999998886543211 1455678999999877544
No 78
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.29 E-value=2e-05 Score=85.43 Aligned_cols=176 Identities=14% Similarity=0.129 Sum_probs=104.3
Q ss_pred ccchHHHHHHHHHHhccCCCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEe--CCccCHHHHHHHHHHhcCC
Q 002657 156 VVGLQSQLEQVWRCLVEEPAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVV--SKDLRLENIQEIIGGKIGL 233 (896)
Q Consensus 156 ~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~--~~~~~~~~~~~~i~~~l~~ 233 (896)
++|++..++.+..++..+..+.+.++|++|+||||+|+.+++... ...+.. .++.+ +.......+...+......
T Consensus 19 ~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~--~~~~~~-~~i~~~~~~~~~~~~~~~~i~~~~~~ 95 (319)
T PRK00440 19 IVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELY--GEDWRE-NFLELNASDERGIDVIRNKIKEFART 95 (319)
T ss_pred hcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHc--CCcccc-ceEEeccccccchHHHHHHHHHHHhc
Confidence 789999999999999887777789999999999999999998862 222221 22222 2221111111111111000
Q ss_pred CCccccccCHHHHHHHHHHHhCCceEEEEEecCCCcc--ccccccccCCCCCCCCcEEEEecCCH-HH-HhhhccCccee
Q 002657 234 MNESWKSKSLQEKSLDIFKILGEKKFVLLLDDLWQRV--DLTKVGVPLPSPQSSASKVVFTTRSE-EI-CGLMEAQKKFK 309 (896)
Q Consensus 234 ~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~~s~iivTtR~~-~v-~~~~~~~~~~~ 309 (896)
.. .-...+-++++|+++... ....+...+. .....+.+|+++... .+ .........++
T Consensus 96 ~~-----------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le-~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~ 157 (319)
T PRK00440 96 AP-----------------VGGAPFKIIFLDEADNLTSDAQQALRRTME-MYSQNTRFILSCNYSSKIIDPIQSRCAVFR 157 (319)
T ss_pred CC-----------------CCCCCceEEEEeCcccCCHHHHHHHHHHHh-cCCCCCeEEEEeCCccccchhHHHHhheee
Confidence 00 001235589999986432 2333333333 223446677766432 11 11112334689
Q ss_pred ccCCChHhHHHHHHHHhcCcccCCCCChHHHHHHHHHHhCCCchHH
Q 002657 310 VACLSDKDAWELFCHKVGEETLNNHPDIPELAQTVAKECGGMPLAL 355 (896)
Q Consensus 310 l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai 355 (896)
+.+++.++....+.+.+......- -.+....+++.++|.+--+
T Consensus 158 ~~~l~~~ei~~~l~~~~~~~~~~i---~~~al~~l~~~~~gd~r~~ 200 (319)
T PRK00440 158 FSPLKKEAVAERLRYIAENEGIEI---TDDALEAIYYVSEGDMRKA 200 (319)
T ss_pred eCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHH
Confidence 999999999999888776443211 2556888999999987654
No 79
>PRK09087 hypothetical protein; Validated
Probab=98.29 E-value=1e-05 Score=81.71 Aligned_cols=142 Identities=18% Similarity=0.153 Sum_probs=88.9
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHH
Q 002657 174 PAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDLRLENIQEIIGGKIGLMNESWKSKSLQEKSLDIFKI 253 (896)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 253 (896)
..+.+.|+|++|+|||+|++.+++.. . ..|++.. .+..++.. .
T Consensus 43 ~~~~l~l~G~~GsGKThLl~~~~~~~-~-------~~~i~~~------~~~~~~~~-----------------------~ 85 (226)
T PRK09087 43 PSPVVVLAGPVGSGKTHLASIWREKS-D-------ALLIHPN------EIGSDAAN-----------------------A 85 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhc-C-------CEEecHH------HcchHHHH-----------------------h
Confidence 45679999999999999999888764 1 1233221 11111111 1
Q ss_pred hCCceEEEEEecCCCcc-ccccccccCCCCCCCCcEEEEecCC---------HHHHhhhccCcceeccCCChHhHHHHHH
Q 002657 254 LGEKKFVLLLDDLWQRV-DLTKVGVPLPSPQSSASKVVFTTRS---------EEICGLMEAQKKFKVACLSDKDAWELFC 323 (896)
Q Consensus 254 l~~kr~LlVlDdv~~~~-~~~~l~~~~~~~~~~~s~iivTtR~---------~~v~~~~~~~~~~~l~~L~~~e~~~Lf~ 323 (896)
+.+ -+|++||+.... +-+.+...+......|..||+|++. ++..+.+.....+++++++.++-.+++.
T Consensus 86 ~~~--~~l~iDDi~~~~~~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~ 163 (226)
T PRK09087 86 AAE--GPVLIEDIDAGGFDETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIF 163 (226)
T ss_pred hhc--CeEEEECCCCCCCCHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHH
Confidence 111 278889995321 1111222121112346779998873 3344555667899999999999999999
Q ss_pred HHhcCcccCCCCChHHHHHHHHHHhCCCchHHHH
Q 002657 324 HKVGEETLNNHPDIPELAQTVAKECGGMPLALIT 357 (896)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~ 357 (896)
+.+......- -+++..-|++.+.|..-++..
T Consensus 164 ~~~~~~~~~l---~~ev~~~La~~~~r~~~~l~~ 194 (226)
T PRK09087 164 KLFADRQLYV---DPHVVYYLVSRMERSLFAAQT 194 (226)
T ss_pred HHHHHcCCCC---CHHHHHHHHHHhhhhHHHHHH
Confidence 9886543222 267788899998887776654
No 80
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.28 E-value=1.1e-06 Score=81.13 Aligned_cols=117 Identities=21% Similarity=0.221 Sum_probs=77.4
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHhhhccC--CCCCCeEEEEEeCCccCHHHHHHHHHHhcCCCCccccccCHHHHHHHHH
Q 002657 174 PAGIVGLYGMGGVGKTTLLTHINNKFLQV--PNDFDCVIWVVVSKDLRLENIQEIIGGKIGLMNESWKSKSLQEKSLDIF 251 (896)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 251 (896)
+.+++.|+|.+|+|||++++.+.+..... ...-..++|+.+....+...+...|+.+++..... ..+..++...+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~l~~~~~ 80 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS--RQTSDELRSLLI 80 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS--TS-HHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc--cCCHHHHHHHHH
Confidence 34689999999999999999999876210 00134567999988889999999999999876532 345667777788
Q ss_pred HHhCCc-eEEEEEecCCCc-c--ccccccccCCCCCCCCcEEEEecCC
Q 002657 252 KILGEK-KFVLLLDDLWQR-V--DLTKVGVPLPSPQSSASKVVFTTRS 295 (896)
Q Consensus 252 ~~l~~k-r~LlVlDdv~~~-~--~~~~l~~~~~~~~~~~s~iivTtR~ 295 (896)
+.+... ..+||+||++.. . .++.+.. +. ...+.+||+..+.
T Consensus 81 ~~l~~~~~~~lviDe~~~l~~~~~l~~l~~-l~--~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 81 DALDRRRVVLLVIDEADHLFSDEFLEFLRS-LL--NESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHCTEEEEEEETTHHHHTHHHHHHHHH-HT--CSCBEEEEEEESS
T ss_pred HHHHhcCCeEEEEeChHhcCCHHHHHHHHH-HH--hCCCCeEEEEECh
Confidence 877654 459999999653 1 2233322 21 2556677776654
No 81
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.28 E-value=7.8e-07 Score=69.34 Aligned_cols=57 Identities=35% Similarity=0.543 Sum_probs=53.3
Q ss_pred ccceEEEeeccccccccc--CCCCCCccEEecccccccccchhhhccCCCCcEEEccCC
Q 002657 514 ENVSRLSLMQNRIKNLSE--IPKCPHLLTLFLNSNELKIITNDFFQFMPSLKVLSLSRN 570 (896)
Q Consensus 514 ~~lr~L~l~~~~~~~l~~--~~~~~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~Ls~~ 570 (896)
++++.|.+++|.+..++. +..+++|++|++++|.++.++++.|.++++|++|++++|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 378999999999999874 789999999999999999999999999999999999999
No 82
>PLN03025 replication factor C subunit; Provisional
Probab=98.28 E-value=1.1e-05 Score=86.83 Aligned_cols=178 Identities=14% Similarity=0.139 Sum_probs=104.5
Q ss_pred ccchHHHHHHHHHHhccCCCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCC-eEEEEEeCCccCHHHHHHHHHHhcCCC
Q 002657 156 VVGLQSQLEQVWRCLVEEPAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFD-CVIWVVVSKDLRLENIQEIIGGKIGLM 234 (896)
Q Consensus 156 ~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i~~~l~~~ 234 (896)
++|.++.++.|..++..+..+.+.++|++|+||||+|+.+++... ...|. .++-+..++...... .+++++.+...
T Consensus 15 ~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~--~~~~~~~~~eln~sd~~~~~~-vr~~i~~~~~~ 91 (319)
T PLN03025 15 IVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELL--GPNYKEAVLELNASDDRGIDV-VRNKIKMFAQK 91 (319)
T ss_pred hcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHh--cccCccceeeecccccccHHH-HHHHHHHHHhc
Confidence 789998888888888777777788999999999999999998862 22232 122222222222221 12221111100
Q ss_pred CccccccCHHHHHHHHHHHhCCceEEEEEecCCCcc--ccccccccCCCCCCCCcEEEEecCCH-HHH-hhhccCcceec
Q 002657 235 NESWKSKSLQEKSLDIFKILGEKKFVLLLDDLWQRV--DLTKVGVPLPSPQSSASKVVFTTRSE-EIC-GLMEAQKKFKV 310 (896)
Q Consensus 235 ~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~~s~iivTtR~~-~v~-~~~~~~~~~~l 310 (896)
.. ..-.++.-++++|+++... ....+...+. .....+++|+++... .+. ...+....+++
T Consensus 92 ~~---------------~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE-~~~~~t~~il~~n~~~~i~~~L~SRc~~i~f 155 (319)
T PLN03025 92 KV---------------TLPPGRHKIVILDEADSMTSGAQQALRRTME-IYSNTTRFALACNTSSKIIEPIQSRCAIVRF 155 (319)
T ss_pred cc---------------cCCCCCeEEEEEechhhcCHHHHHHHHHHHh-cccCCceEEEEeCCccccchhHHHhhhcccC
Confidence 00 0002356689999997532 2222222222 223456677766543 221 11223467899
Q ss_pred cCCChHhHHHHHHHHhcCcccCCCCChHHHHHHHHHHhCCCchHH
Q 002657 311 ACLSDKDAWELFCHKVGEETLNNHPDIPELAQTVAKECGGMPLAL 355 (896)
Q Consensus 311 ~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai 355 (896)
+++++++..+.+...+......-+ .+....|++.++|..-.+
T Consensus 156 ~~l~~~~l~~~L~~i~~~egi~i~---~~~l~~i~~~~~gDlR~a 197 (319)
T PLN03025 156 SRLSDQEILGRLMKVVEAEKVPYV---PEGLEAIIFTADGDMRQA 197 (319)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHH
Confidence 999999999999888765432222 456788999998866433
No 83
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.27 E-value=2.4e-05 Score=84.64 Aligned_cols=194 Identities=12% Similarity=0.073 Sum_probs=107.9
Q ss_pred ccchHHHHHHHHHHhccCCCe-EEEEEcCCCchHHHHHHHHHhhhccCC-CCCCe-EE-EEEeCCccCHHHHHHHHHHhc
Q 002657 156 VVGLQSQLEQVWRCLVEEPAG-IVGLYGMGGVGKTTLLTHINNKFLQVP-NDFDC-VI-WVVVSKDLRLENIQEIIGGKI 231 (896)
Q Consensus 156 ~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~-~~f~~-~~-wv~~~~~~~~~~~~~~i~~~l 231 (896)
++|.++.++.+.+.+..+... .+.++|+.|+||+|+|..+++...... ..... .. -.+... ......-+.+...-
T Consensus 21 iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~-~~~c~~c~~i~~~~ 99 (365)
T PRK07471 21 LFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAI-DPDHPVARRIAAGA 99 (365)
T ss_pred ccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccC-CCCChHHHHHHccC
Confidence 899999999999999887655 588999999999999999988762111 00000 00 000000 00001111111110
Q ss_pred C-------CCCccc-----cccCHHHHHHHHHHHhC-----CceEEEEEecCCCc--cccccccccCCCCCCCCcEEEEe
Q 002657 232 G-------LMNESW-----KSKSLQEKSLDIFKILG-----EKKFVLLLDDLWQR--VDLTKVGVPLPSPQSSASKVVFT 292 (896)
Q Consensus 232 ~-------~~~~~~-----~~~~~~~~~~~l~~~l~-----~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~~s~iivT 292 (896)
- ...+.- ..-..++ +..+.+.+. +++-++|+||++.. .....+...+. ....++.+|++
T Consensus 100 HPDl~~i~~~~~~~~~~~~~~I~Vdq-iR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LE-epp~~~~~IL~ 177 (365)
T PRK07471 100 HGGLLTLERSWNEKGKRLRTVITVDE-VRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLE-EPPARSLFLLV 177 (365)
T ss_pred CCCeEEEecccccccccccccccHHH-HHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHh-cCCCCeEEEEE
Confidence 0 000000 0011222 333444442 46679999999643 33444444443 33345566666
Q ss_pred cCCHH-HH-hhhccCcceeccCCChHhHHHHHHHHhcCcccCCCCChHHHHHHHHHHhCCCchHHHHHH
Q 002657 293 TRSEE-IC-GLMEAQKKFKVACLSDKDAWELFCHKVGEETLNNHPDIPELAQTVAKECGGMPLALITIG 359 (896)
Q Consensus 293 tR~~~-v~-~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~~ 359 (896)
|.+.. +. ...+....+.+.+++.++..+++.+...... .+....+++.++|.|..+..+.
T Consensus 178 t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~~~-------~~~~~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 178 SHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPDLP-------DDPRAALAALAEGSVGRALRLA 239 (365)
T ss_pred ECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcccCC-------HHHHHHHHHHcCCCHHHHHHHh
Confidence 66553 32 2223456899999999999999987643211 1223678999999998665543
No 84
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.26 E-value=1.9e-05 Score=88.36 Aligned_cols=184 Identities=18% Similarity=0.180 Sum_probs=105.3
Q ss_pred ccchHHHHHHHHHHhccCCC-eEEEEEcCCCchHHHHHHHHHhhhccCCCC------------------CCeEEEEEeCC
Q 002657 156 VVGLQSQLEQVWRCLVEEPA-GIVGLYGMGGVGKTTLLTHINNKFLQVPND------------------FDCVIWVVVSK 216 (896)
Q Consensus 156 ~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~------------------f~~~~wv~~~~ 216 (896)
++|.+.....|...+..+.. ..+.++|++|+||||+|+.+++........ +..+..+..+.
T Consensus 16 ivGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el~aa~ 95 (472)
T PRK14962 16 VVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIELDAAS 95 (472)
T ss_pred ccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEEEeCcc
Confidence 89999888888888887766 457899999999999999998876210000 00111222211
Q ss_pred ccCHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHhCCceEEEEEecCCCc--cccccccccCCCCCCCCcEEEEecC
Q 002657 217 DLRLENIQEIIGGKIGLMNESWKSKSLQEKSLDIFKILGEKKFVLLLDDLWQR--VDLTKVGVPLPSPQSSASKVVFTTR 294 (896)
Q Consensus 217 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~~s~iivTtR 294 (896)
......+ +++.+.... .-..+++-++|+|+++.. .....+...+. .......+|++|.
T Consensus 96 ~~gid~i-R~i~~~~~~------------------~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE-~p~~~vv~Ilatt 155 (472)
T PRK14962 96 NRGIDEI-RKIRDAVGY------------------RPMEGKYKVYIIDEVHMLTKEAFNALLKTLE-EPPSHVVFVLATT 155 (472)
T ss_pred cCCHHHH-HHHHHHHhh------------------ChhcCCeEEEEEEChHHhHHHHHHHHHHHHH-hCCCcEEEEEEeC
Confidence 1111111 111111100 001245669999999643 23344444443 2223344444444
Q ss_pred C-HHHHh-hhccCcceeccCCChHhHHHHHHHHhcCcccCCCCChHHHHHHHHHHhCC-CchHHHHHHHhh
Q 002657 295 S-EEICG-LMEAQKKFKVACLSDKDAWELFCHKVGEETLNNHPDIPELAQTVAKECGG-MPLALITIGRAM 362 (896)
Q Consensus 295 ~-~~v~~-~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G-lPlai~~~~~~l 362 (896)
+ ..+.. .......+++.+++.++....+.+.+......- -.+....|++.++| .+.|+..+-.+.
T Consensus 156 n~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~i---~~eal~~Ia~~s~GdlR~aln~Le~l~ 223 (472)
T PRK14962 156 NLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIEI---DREALSFIAKRASGGLRDALTMLEQVW 223 (472)
T ss_pred ChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 3 33322 223456789999999999999888775433111 24567888888865 566776665543
No 85
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.26 E-value=1.6e-05 Score=87.44 Aligned_cols=192 Identities=14% Similarity=0.079 Sum_probs=107.8
Q ss_pred ccchHHHHHHHHHHhccCCCe-EEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHhcC-C
Q 002657 156 VVGLQSQLEQVWRCLVEEPAG-IVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDLRLENIQEIIGGKIG-L 233 (896)
Q Consensus 156 ~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~-~ 233 (896)
++|.+..+..|..++..+... .+.++|+.|+||||+|+.+++... ...... ...+....+...+...+...+. .
T Consensus 20 vVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Ln--ce~~~~--~~pCg~C~sC~~i~~g~~~dviEI 95 (484)
T PRK14956 20 VIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLN--CENPIG--NEPCNECTSCLEITKGISSDVLEI 95 (484)
T ss_pred HhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcC--cccccC--ccccCCCcHHHHHHccCCccceee
Confidence 899999999999999887754 578999999999999999998762 111100 0011111111111111100000 0
Q ss_pred CC-ccccccCHHHHHHHHHHH-hCCceEEEEEecCCCc--cccccccccCCCCCCCCcEEEE-ecCCHHHH-hhhccCcc
Q 002657 234 MN-ESWKSKSLQEKSLDIFKI-LGEKKFVLLLDDLWQR--VDLTKVGVPLPSPQSSASKVVF-TTRSEEIC-GLMEAQKK 307 (896)
Q Consensus 234 ~~-~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~~s~iiv-TtR~~~v~-~~~~~~~~ 307 (896)
.. ......+..++...+... ..++.-++|+|+++.. ..+..+...+. .......+|+ ||....+. ........
T Consensus 96 daas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLE-EPp~~viFILaTte~~kI~~TI~SRCq~ 174 (484)
T PRK14956 96 DAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLE-EPPAHIVFILATTEFHKIPETILSRCQD 174 (484)
T ss_pred chhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhh-cCCCceEEEeecCChhhccHHHHhhhhe
Confidence 00 000001111222222211 2356669999999643 34555544443 2223444444 44444442 23344567
Q ss_pred eeccCCChHhHHHHHHHHhcCcccCCCCChHHHHHHHHHHhCCCchHH
Q 002657 308 FKVACLSDKDAWELFCHKVGEETLNNHPDIPELAQTVAKECGGMPLAL 355 (896)
Q Consensus 308 ~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai 355 (896)
|.+.+++.++..+.+.+.+......- -.+....|++.++|.+--+
T Consensus 175 ~~f~~ls~~~i~~~L~~i~~~Egi~~---e~eAL~~Ia~~S~Gd~RdA 219 (484)
T PRK14956 175 FIFKKVPLSVLQDYSEKLCKIENVQY---DQEGLFWIAKKGDGSVRDM 219 (484)
T ss_pred eeecCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCChHHHH
Confidence 99999999999998888765443211 2456788999999987533
No 86
>PRK05642 DNA replication initiation factor; Validated
Probab=98.25 E-value=8.7e-06 Score=82.99 Aligned_cols=152 Identities=16% Similarity=0.227 Sum_probs=92.1
Q ss_pred CeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHh
Q 002657 175 AGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDLRLENIQEIIGGKIGLMNESWKSKSLQEKSLDIFKIL 254 (896)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 254 (896)
...+.|+|..|+|||.|++.+++... ..-..++|++..+ +... ...+.+.+
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~---~~~~~v~y~~~~~------~~~~--------------------~~~~~~~~ 95 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFE---QRGEPAVYLPLAE------LLDR--------------------GPELLDNL 95 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH---hCCCcEEEeeHHH------HHhh--------------------hHHHHHhh
Confidence 36789999999999999999988762 1223466775432 2110 01222333
Q ss_pred CCceEEEEEecCCCc---ccccc-ccccCCCCCCCCcEEEEecCCHH---------HHhhhccCcceeccCCChHhHHHH
Q 002657 255 GEKKFVLLLDDLWQR---VDLTK-VGVPLPSPQSSASKVVFTTRSEE---------ICGLMEAQKKFKVACLSDKDAWEL 321 (896)
Q Consensus 255 ~~kr~LlVlDdv~~~---~~~~~-l~~~~~~~~~~~s~iivTtR~~~---------v~~~~~~~~~~~l~~L~~~e~~~L 321 (896)
++-. +||+||+... ..|+. +...+......|..||+|++... ..+.+....++++++++.++-.++
T Consensus 96 ~~~d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~i 174 (234)
T PRK05642 96 EQYE-LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRA 174 (234)
T ss_pred hhCC-EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHH
Confidence 3222 6789999532 34433 22222211234677889887532 233344557899999999999999
Q ss_pred HHHHhcCcccCCCCChHHHHHHHHHHhCCCchHHHHHH
Q 002657 322 FCHKVGEETLNNHPDIPELAQTVAKECGGMPLALITIG 359 (896)
Q Consensus 322 f~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~~ 359 (896)
+.+++......- -+++..-|++.+.|..-.+..+-
T Consensus 175 l~~ka~~~~~~l---~~ev~~~L~~~~~~d~r~l~~~l 209 (234)
T PRK05642 175 LQLRASRRGLHL---TDEVGHFILTRGTRSMSALFDLL 209 (234)
T ss_pred HHHHHHHcCCCC---CHHHHHHHHHhcCCCHHHHHHHH
Confidence 986664432111 25778888888887765554433
No 87
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.25 E-value=9.6e-06 Score=79.01 Aligned_cols=173 Identities=15% Similarity=0.177 Sum_probs=88.4
Q ss_pred ccchHHHHHHHHHHhc-----cCCCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHh
Q 002657 156 VVGLQSQLEQVWRCLV-----EEPAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDLRLENIQEIIGGK 230 (896)
Q Consensus 156 ~vGr~~~~~~l~~~L~-----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 230 (896)
|||.++-++.+.-++. .+...-+.+||++|+||||||.-+++.. ...|. +.+...-....++ ..++..
T Consensus 26 fiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~---~~~~~---~~sg~~i~k~~dl-~~il~~ 98 (233)
T PF05496_consen 26 FIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANEL---GVNFK---ITSGPAIEKAGDL-AAILTN 98 (233)
T ss_dssp S-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHC---T--EE---EEECCC--SCHHH-HHHHHT
T ss_pred ccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhcc---CCCeE---eccchhhhhHHHH-HHHHHh
Confidence 9999988887655543 2356788999999999999999999987 34442 2222110011111 111111
Q ss_pred cCCCCccccccCHHHHHHHHHHHhCCceEEEEEecCCCc--cc-------cccccccCCCCCC-----------CCcEEE
Q 002657 231 IGLMNESWKSKSLQEKSLDIFKILGEKKFVLLLDDLWQR--VD-------LTKVGVPLPSPQS-----------SASKVV 290 (896)
Q Consensus 231 l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~--~~-------~~~l~~~~~~~~~-----------~~s~ii 290 (896)
+ +++-+|.+|++..- .. .++....+.-..+ +=+-|=
T Consensus 99 -----------------------l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTlig 154 (233)
T PF05496_consen 99 -----------------------L-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIG 154 (233)
T ss_dssp --------------------------TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEE
T ss_pred -----------------------c-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEee
Confidence 1 23446677877531 10 1111100000011 112344
Q ss_pred EecCCHHHHhhhcc--CcceeccCCChHhHHHHHHHHhcCcccCCCCChHHHHHHHHHHhCCCchHHHHHHHhh
Q 002657 291 FTTRSEEICGLMEA--QKKFKVACLSDKDAWELFCHKVGEETLNNHPDIPELAQTVAKECGGMPLALITIGRAM 362 (896)
Q Consensus 291 vTtR~~~v~~~~~~--~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~~~~l 362 (896)
-|||..-+..-+.. .-..+++..+.+|-.++..+.+..-... --++.+.+|++++.|-|--+.-+-+-+
T Consensus 155 ATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~---i~~~~~~~Ia~rsrGtPRiAnrll~rv 225 (233)
T PF05496_consen 155 ATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNIE---IDEDAAEEIARRSRGTPRIANRLLRRV 225 (233)
T ss_dssp EESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-E---E-HHHHHHHHHCTTTSHHHHHHHHHHH
T ss_pred eeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCCC---cCHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 57776443222222 1245899999999999998877544321 226779999999999997665544433
No 88
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.25 E-value=1.1e-07 Score=106.42 Aligned_cols=125 Identities=34% Similarity=0.461 Sum_probs=80.5
Q ss_pred ccceEEEeecccccc-cccCCCCCCccEEecccccccccchhhhccCCCCcEEEccCCcccccccccccCCCCCCEEecc
Q 002657 514 ENVSRLSLMQNRIKN-LSEIPKCPHLLTLFLNSNELKIITNDFFQFMPSLKVLSLSRNRRLTNLQLGISKLVSLQHLDLS 592 (896)
Q Consensus 514 ~~lr~L~l~~~~~~~-l~~~~~~~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~Ls 592 (896)
..+..+++..|.+.. ...+..+++|..|++.+|.+..+... +..|++|++|+|++| .|+.+. .+..+..|+.|+++
T Consensus 72 ~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~-l~~~~~L~~L~ls~N-~I~~i~-~l~~l~~L~~L~l~ 148 (414)
T KOG0531|consen 72 TSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENL-LSSLVNLQVLDLSFN-KITKLE-GLSTLTLLKELNLS 148 (414)
T ss_pred HhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccc-hhhhhcchheecccc-cccccc-chhhccchhhheec
Confidence 445555566666665 33366677777777777776666553 456777777777777 676665 56666667777777
Q ss_pred CCCccccchhhhcCCCCCEeeccccccccCCcH-HHHhccccccEEEeeccCC
Q 002657 593 LTNIEKLSGELKALVNLKCLNLEYTWSLVTIPQ-QLIASFLRLHVLRMFGVGD 644 (896)
Q Consensus 593 ~~~i~~lp~~l~~L~~L~~L~L~~~~~l~~lp~-~~i~~l~~L~~L~l~~~~~ 644 (896)
+|.|..++ .+..+++|+.+++++| .+..+.. . ...+.+|+.+.+.++..
T Consensus 149 ~N~i~~~~-~~~~l~~L~~l~l~~n-~i~~ie~~~-~~~~~~l~~l~l~~n~i 198 (414)
T KOG0531|consen 149 GNLISDIS-GLESLKSLKLLDLSYN-RIVDIENDE-LSELISLEELDLGGNSI 198 (414)
T ss_pred cCcchhcc-CCccchhhhcccCCcc-hhhhhhhhh-hhhccchHHHhccCCch
Confidence 77776665 4555777777777777 4555544 1 25666666666665543
No 89
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.24 E-value=7.5e-08 Score=105.95 Aligned_cols=126 Identities=28% Similarity=0.339 Sum_probs=85.1
Q ss_pred CCccEEecccccccccchhhhccCCCCcEEEccCCcccccccccccCCCCCCEEeccCCCccccchh-hhcCCCCCEeec
Q 002657 536 PHLLTLFLNSNELKIITNDFFQFMPSLKVLSLSRNRRLTNLQLGISKLVSLQHLDLSLTNIEKLSGE-LKALVNLKCLNL 614 (896)
Q Consensus 536 ~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~Ls~~~i~~lp~~-l~~L~~L~~L~L 614 (896)
-.|.+.++++|.+..+..+ +.-++.|+.|||++| .++..- .+..|++|++|||++|.+..+|.- ...+. |+.|++
T Consensus 164 n~L~~a~fsyN~L~~mD~S-Lqll~ale~LnLshN-k~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~l 239 (1096)
T KOG1859|consen 164 NKLATASFSYNRLVLMDES-LQLLPALESLNLSHN-KFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNL 239 (1096)
T ss_pred hhHhhhhcchhhHHhHHHH-HHHHHHhhhhccchh-hhhhhH-HHHhcccccccccccchhccccccchhhhh-heeeee
Confidence 3566666667766555544 566778888888888 777665 777788888888888888777742 22333 888888
Q ss_pred cccccccCCcHHHHhccccccEEEeeccCCCcccccccccccccCccccHHHhcCCCCCcEEEEEecC
Q 002657 615 EYTWSLVTIPQQLIASFLRLHVLRMFGVGDDAFEVASEDSVLFDGGEFLVEELLGLNHLEVLSLTLRS 682 (896)
Q Consensus 615 ~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 682 (896)
++| -++++-. +.+|.+|+.|++++|-... ...+.-|..|..|+.|++.+|.
T Consensus 240 rnN-~l~tL~g--ie~LksL~~LDlsyNll~~--------------hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 240 RNN-ALTTLRG--IENLKSLYGLDLSYNLLSE--------------HSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred ccc-HHHhhhh--HHhhhhhhccchhHhhhhc--------------chhhhHHHHHHHHHHHhhcCCc
Confidence 887 5666654 7788888888887765542 3344445555666677776665
No 90
>PLN03150 hypothetical protein; Provisional
Probab=98.24 E-value=2.1e-06 Score=100.58 Aligned_cols=109 Identities=23% Similarity=0.341 Sum_probs=90.5
Q ss_pred cceEEEeecccccc-cc-cCCCCCCccEEecccccccccchhhhccCCCCcEEEccCCcccc-cccccccCCCCCCEEec
Q 002657 515 NVSRLSLMQNRIKN-LS-EIPKCPHLLTLFLNSNELKIITNDFFQFMPSLKVLSLSRNRRLT-NLQLGISKLVSLQHLDL 591 (896)
Q Consensus 515 ~lr~L~l~~~~~~~-l~-~~~~~~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~Ls~~~~i~-~lp~~i~~L~~L~~L~L 591 (896)
.++.|++++|.+.. +| .+..+++|+.|+|++|.+....+..++.+++|++|+|++| .+. .+|..++++++|++|+|
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N-~lsg~iP~~l~~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYN-SFNGSIPESLGQLTSLRILNL 497 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCC-CCCCCCchHHhcCCCCCEEEC
Confidence 47889999988864 33 3788999999999999988555555899999999999999 555 78999999999999999
Q ss_pred cCCCcc-ccchhhhcC-CCCCEeeccccccccCCc
Q 002657 592 SLTNIE-KLSGELKAL-VNLKCLNLEYTWSLVTIP 624 (896)
Q Consensus 592 s~~~i~-~lp~~l~~L-~~L~~L~L~~~~~l~~lp 624 (896)
++|.+. .+|..++.+ .++..+++.+|..+...|
T Consensus 498 s~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 498 NGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred cCCcccccCChHHhhccccCceEEecCCccccCCC
Confidence 999988 889888764 578889999886554444
No 91
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.23 E-value=2.1e-05 Score=88.95 Aligned_cols=181 Identities=19% Similarity=0.153 Sum_probs=107.4
Q ss_pred ccchHHHHHHHHHHhccCCC-eEEEEEcCCCchHHHHHHHHHhhhccCC------------------CCCCeEEEEEeCC
Q 002657 156 VVGLQSQLEQVWRCLVEEPA-GIVGLYGMGGVGKTTLLTHINNKFLQVP------------------NDFDCVIWVVVSK 216 (896)
Q Consensus 156 ~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~------------------~~f~~~~wv~~~~ 216 (896)
++|.+..++.|...+..+.. ..+.++|+.|+||||+|+.+++...... ..|...+++....
T Consensus 18 iiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlieidaas 97 (546)
T PRK14957 18 VAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEIDAAS 97 (546)
T ss_pred hcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEeeccc
Confidence 79999999999999987655 4577899999999999999998652100 0111222222211
Q ss_pred ccCHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHH-hCCceEEEEEecCCCc--cccccccccCCCCCCCCcEEE-Ee
Q 002657 217 DLRLENIQEIIGGKIGLMNESWKSKSLQEKSLDIFKI-LGEKKFVLLLDDLWQR--VDLTKVGVPLPSPQSSASKVV-FT 292 (896)
Q Consensus 217 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~~s~ii-vT 292 (896)
...+.+ ..++...+... ..+++-++|+|++... ..+..+...+. .....+.+| +|
T Consensus 98 ~~gvd~--------------------ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LE-epp~~v~fIL~T 156 (546)
T PRK14957 98 RTGVEE--------------------TKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLE-EPPEYVKFILAT 156 (546)
T ss_pred ccCHHH--------------------HHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHh-cCCCCceEEEEE
Confidence 111111 11122222111 2356669999999643 33445544443 333455555 45
Q ss_pred cCCHHHH-hhhccCcceeccCCChHhHHHHHHHHhcCcccCCCCChHHHHHHHHHHhCCCch-HHHHHHH
Q 002657 293 TRSEEIC-GLMEAQKKFKVACLSDKDAWELFCHKVGEETLNNHPDIPELAQTVAKECGGMPL-ALITIGR 360 (896)
Q Consensus 293 tR~~~v~-~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPl-ai~~~~~ 360 (896)
|....+. ...+....+++.+++.++..+.+.+.+..... .--++....|++.++|.+- |+..+-.
T Consensus 157 td~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi---~~e~~Al~~Ia~~s~GdlR~alnlLek 223 (546)
T PRK14957 157 TDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENI---NSDEQSLEYIAYHAKGSLRDALSLLDQ 223 (546)
T ss_pred CChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 5444343 22344678999999999998888876644321 1124556789999999664 4454443
No 92
>PTZ00202 tuzin; Provisional
Probab=98.23 E-value=1.7e-05 Score=84.28 Aligned_cols=161 Identities=19% Similarity=0.118 Sum_probs=98.2
Q ss_pred cccchHHHHHHHHHHhcc---CCCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHhc
Q 002657 155 IVVGLQSQLEQVWRCLVE---EPAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDLRLENIQEIIGGKI 231 (896)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 231 (896)
.|+||+.+...+...|.+ +..+++.|.|++|+|||||++.+.... . ...++.-.. +..++++.++.+|
T Consensus 263 ~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l-~------~~qL~vNpr--g~eElLr~LL~AL 333 (550)
T PTZ00202 263 QFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKE-G------MPAVFVDVR--GTEDTLRSVVKAL 333 (550)
T ss_pred CCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcC-C------ceEEEECCC--CHHHHHHHHHHHc
Confidence 399999999999998864 245689999999999999999999765 1 123333333 6799999999999
Q ss_pred CCCCccccccCHHHHHHHHHHHh-C-CceEEEEEecCCCcccccccc---ccCCCCCCCCcEEEEecCCHHHHhh---hc
Q 002657 232 GLMNESWKSKSLQEKSLDIFKIL-G-EKKFVLLLDDLWQRVDLTKVG---VPLPSPQSSASKVVFTTRSEEICGL---ME 303 (896)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~l~~~l-~-~kr~LlVlDdv~~~~~~~~l~---~~~~~~~~~~s~iivTtR~~~v~~~---~~ 303 (896)
|.+.......-...+.+.+.+.- . +++.+||+-= .+..++..+. ..+. ....-|.|++----+...-. ..
T Consensus 334 GV~p~~~k~dLLrqIqeaLl~~~~e~GrtPVLII~l-reg~~l~rvyne~v~la-~drr~ch~v~evpleslt~~~~~lp 411 (550)
T PTZ00202 334 GVPNVEACGDLLDFISEACRRAKKMNGETPLLVLKL-REGSSLQRVYNEVVALA-CDRRLCHVVIEVPLESLTIANTLLP 411 (550)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHHhCCCCEEEEEEe-cCCCcHHHHHHHHHHHH-ccchhheeeeeehHhhcchhcccCc
Confidence 97432111111223333333322 2 5666666532 2222222211 1122 33445677765544433111 11
Q ss_pred cCcceeccCCChHhHHHHHHHHh
Q 002657 304 AQKKFKVACLSDKDAWELFCHKV 326 (896)
Q Consensus 304 ~~~~~~l~~L~~~e~~~Lf~~~~ 326 (896)
.-..|-+.+++.++|.+...+..
T Consensus 412 rldf~~vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 412 RLDFYLVPNFSRSQAFAYTQHAI 434 (550)
T ss_pred cceeEecCCCCHHHHHHHHhhcc
Confidence 23468889999999998877754
No 93
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.23 E-value=1.1e-05 Score=81.29 Aligned_cols=161 Identities=16% Similarity=0.129 Sum_probs=95.6
Q ss_pred CeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHh
Q 002657 175 AGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDLRLENIQEIIGGKIGLMNESWKSKSLQEKSLDIFKIL 254 (896)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 254 (896)
...+.|+|..|+|||.|.+++++...+ ...-..++|+ +..++...+...+... . ...+.+.+
T Consensus 34 ~~~l~l~G~~G~GKTHLL~Ai~~~~~~-~~~~~~v~y~------~~~~f~~~~~~~~~~~-------~----~~~~~~~~ 95 (219)
T PF00308_consen 34 YNPLFLYGPSGLGKTHLLQAIANEAQK-QHPGKRVVYL------SAEEFIREFADALRDG-------E----IEEFKDRL 95 (219)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHH-HCTTS-EEEE------EHHHHHHHHHHHHHTT-------S----HHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHh-ccccccceee------cHHHHHHHHHHHHHcc-------c----chhhhhhh
Confidence 457899999999999999999998732 1122245666 3445555555554321 1 13344455
Q ss_pred CCceEEEEEecCCCcc---ccccc-cccCCCCCCCCcEEEEecCCH---------HHHhhhccCcceeccCCChHhHHHH
Q 002657 255 GEKKFVLLLDDLWQRV---DLTKV-GVPLPSPQSSASKVVFTTRSE---------EICGLMEAQKKFKVACLSDKDAWEL 321 (896)
Q Consensus 255 ~~kr~LlVlDdv~~~~---~~~~l-~~~~~~~~~~~s~iivTtR~~---------~v~~~~~~~~~~~l~~L~~~e~~~L 321 (896)
++- =+|++||++... .|... ...+......|.+||+|++.. +..+.+....++++++++.++-.++
T Consensus 96 ~~~-DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~i 174 (219)
T PF00308_consen 96 RSA-DLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRI 174 (219)
T ss_dssp CTS-SEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHH
T ss_pred hcC-CEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHH
Confidence 533 378899996432 22222 111111123467899999643 3345556777899999999999999
Q ss_pred HHHHhcCcccCCCCChHHHHHHHHHHhCCCchHHHH
Q 002657 322 FCHKVGEETLNNHPDIPELAQTVAKECGGMPLALIT 357 (896)
Q Consensus 322 f~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~ 357 (896)
+.+.+...... --++++.-|++.+.+..-.+..
T Consensus 175 l~~~a~~~~~~---l~~~v~~~l~~~~~~~~r~L~~ 207 (219)
T PF00308_consen 175 LQKKAKERGIE---LPEEVIEYLARRFRRDVRELEG 207 (219)
T ss_dssp HHHHHHHTT-----S-HHHHHHHHHHTTSSHHHHHH
T ss_pred HHHHHHHhCCC---CcHHHHHHHHHhhcCCHHHHHH
Confidence 99988655422 2256777788877765554443
No 94
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.22 E-value=2.2e-05 Score=80.12 Aligned_cols=172 Identities=17% Similarity=0.195 Sum_probs=106.7
Q ss_pred ccchHHHHH---HHHHHhccCCCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHhcC
Q 002657 156 VVGLQSQLE---QVWRCLVEEPAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDLRLENIQEIIGGKIG 232 (896)
Q Consensus 156 ~vGr~~~~~---~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 232 (896)
.||.+..+. -|-+++..+....+.+||++|+||||||+.+...- + .+ ...||..|-...-..-.+.|.++-.
T Consensus 140 yvGQ~hlv~q~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~ts-k--~~--SyrfvelSAt~a~t~dvR~ife~aq 214 (554)
T KOG2028|consen 140 YVGQSHLVGQDGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTS-K--KH--SYRFVELSATNAKTNDVRDIFEQAQ 214 (554)
T ss_pred hcchhhhcCcchHHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhc-C--CC--ceEEEEEeccccchHHHHHHHHHHH
Confidence 456554332 34455566788899999999999999999999875 2 22 1566776655443333344444321
Q ss_pred CCCccccccCHHHHHHHHHHHhCCceEEEEEecCC--CccccccccccCCCCCCCCcEEEE--ecCCHHH---HhhhccC
Q 002657 233 LMNESWKSKSLQEKSLDIFKILGEKKFVLLLDDLW--QRVDLTKVGVPLPSPQSSASKVVF--TTRSEEI---CGLMEAQ 305 (896)
Q Consensus 233 ~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~--~~~~~~~l~~~~~~~~~~~s~iiv--TtR~~~v---~~~~~~~ 305 (896)
=...+.++|.+|++|.|. +..+.+.+ +| ...+|.-++| ||.++.. +......
T Consensus 215 -----------------~~~~l~krkTilFiDEiHRFNksQQD~f---LP-~VE~G~I~lIGATTENPSFqln~aLlSRC 273 (554)
T KOG2028|consen 215 -----------------NEKSLTKRKTILFIDEIHRFNKSQQDTF---LP-HVENGDITLIGATTENPSFQLNAALLSRC 273 (554)
T ss_pred -----------------HHHhhhcceeEEEeHHhhhhhhhhhhcc---cc-eeccCceEEEecccCCCccchhHHHHhcc
Confidence 112345789999999995 33334433 33 4456665555 7776643 3445667
Q ss_pred cceeccCCChHhHHHHHHHHhc---Cccc--CCCCC-----hHHHHHHHHHHhCCCch
Q 002657 306 KKFKVACLSDKDAWELFCHKVG---EETL--NNHPD-----IPELAQTVAKECGGMPL 353 (896)
Q Consensus 306 ~~~~l~~L~~~e~~~Lf~~~~~---~~~~--~~~~~-----~~~~~~~i~~~~~GlPl 353 (896)
.++.|++|..++...++.+... .... ..-++ -..+..-++..|+|-.-
T Consensus 274 ~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR 331 (554)
T KOG2028|consen 274 RVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDAR 331 (554)
T ss_pred ceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHH
Confidence 8899999999999999988442 1110 01111 13455667777888654
No 95
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.21 E-value=3.7e-05 Score=84.63 Aligned_cols=179 Identities=13% Similarity=0.149 Sum_probs=106.3
Q ss_pred ccchHHHHHHHHHHhccCCC-eEEEEEcCCCchHHHHHHHHHhhhccC-C------------------CCCCeEEEEEeC
Q 002657 156 VVGLQSQLEQVWRCLVEEPA-GIVGLYGMGGVGKTTLLTHINNKFLQV-P------------------NDFDCVIWVVVS 215 (896)
Q Consensus 156 ~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~-~------------------~~f~~~~wv~~~ 215 (896)
++|.+..++.+.+++..+.. ..+.++|++|+||||+|+.+++..... . .+++. .++...
T Consensus 16 iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~-~~~~~~ 94 (355)
T TIGR02397 16 VIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV-IEIDAA 94 (355)
T ss_pred ccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE-EEeecc
Confidence 79999999999999987654 467889999999999999998875210 0 02222 222221
Q ss_pred CccCHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHhCCceEEEEEecCCCc--cccccccccCCCCCCCCcEEEEec
Q 002657 216 KDLRLENIQEIIGGKIGLMNESWKSKSLQEKSLDIFKILGEKKFVLLLDDLWQR--VDLTKVGVPLPSPQSSASKVVFTT 293 (896)
Q Consensus 216 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~~s~iivTt 293 (896)
....... .+++.+.+... -..+++-++|+|++... .....+...+. .....+.+|++|
T Consensus 95 ~~~~~~~-~~~l~~~~~~~------------------p~~~~~~vviidea~~l~~~~~~~Ll~~le-~~~~~~~lIl~~ 154 (355)
T TIGR02397 95 SNNGVDD-IREILDNVKYA------------------PSSGKYKVYIIDEVHMLSKSAFNALLKTLE-EPPEHVVFILAT 154 (355)
T ss_pred ccCCHHH-HHHHHHHHhcC------------------cccCCceEEEEeChhhcCHHHHHHHHHHHh-CCccceeEEEEe
Confidence 1111111 11121111100 01234558899998543 23444444443 333456666666
Q ss_pred CCHH-HH-hhhccCcceeccCCChHhHHHHHHHHhcCcccCCCCChHHHHHHHHHHhCCCchHHHHH
Q 002657 294 RSEE-IC-GLMEAQKKFKVACLSDKDAWELFCHKVGEETLNNHPDIPELAQTVAKECGGMPLALITI 358 (896)
Q Consensus 294 R~~~-v~-~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~ 358 (896)
.+.. +. ........+++.+++.++..+.+...+....... -.+.+..+++.++|.|..+...
T Consensus 155 ~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i---~~~a~~~l~~~~~g~~~~a~~~ 218 (355)
T TIGR02397 155 TEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKI---EDEALELIARAADGSLRDALSL 218 (355)
T ss_pred CCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCChHHHHHH
Confidence 5543 22 2223345788999999999998888775433111 1466788999999988665443
No 96
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.18 E-value=4.1e-06 Score=88.66 Aligned_cols=99 Identities=17% Similarity=0.215 Sum_probs=66.1
Q ss_pred HHHHHhcc-CCCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCcc--CHHHHHHHHHHhcCCCCcccccc
Q 002657 165 QVWRCLVE-EPAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDL--RLENIQEIIGGKIGLMNESWKSK 241 (896)
Q Consensus 165 ~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~~~~~~ 241 (896)
++++++.. +.-....|+|++|+||||||+++|+.. . ..+|+.++||.+.+.. .+.++++.+...+-... ++..
T Consensus 158 rvID~l~PIGkGQR~lIvgppGvGKTTLaK~Ian~I-~-~nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st--~d~~ 233 (416)
T PRK09376 158 RIIDLIAPIGKGQRGLIVAPPKAGKTVLLQNIANSI-T-TNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVAST--FDEP 233 (416)
T ss_pred eeeeeecccccCceEEEeCCCCCChhHHHHHHHHHH-H-hhcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEEC--CCCC
Confidence 44554443 455678899999999999999999997 3 3489999999999887 77888888863221111 1111
Q ss_pred CHHHH-----HHHHHHH--hCCceEEEEEecCC
Q 002657 242 SLQEK-----SLDIFKI--LGEKKFVLLLDDLW 267 (896)
Q Consensus 242 ~~~~~-----~~~l~~~--l~~kr~LlVlDdv~ 267 (896)
...+. +-...++ -.++.++|++|++.
T Consensus 234 ~~~~~~~a~~~ie~Ae~~~e~G~dVlL~iDsIt 266 (416)
T PRK09376 234 AERHVQVAEMVIEKAKRLVEHGKDVVILLDSIT 266 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEEEChH
Confidence 11111 1111122 36799999999994
No 97
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.18 E-value=4.8e-05 Score=75.10 Aligned_cols=160 Identities=16% Similarity=0.159 Sum_probs=92.1
Q ss_pred HHHHHhccCCC-eEEEEEcCCCchHHHHHHHHHhhhccCC-------------------CCCCeEEEEEeC-CccCHHHH
Q 002657 165 QVWRCLVEEPA-GIVGLYGMGGVGKTTLLTHINNKFLQVP-------------------NDFDCVIWVVVS-KDLRLENI 223 (896)
Q Consensus 165 ~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~~f~~~~wv~~~-~~~~~~~~ 223 (896)
.+.+.+..++. ..+.++|+.|+||||+|+.+.+...... .+.+. .++... .......
T Consensus 3 ~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~-~~~~~~~~~~~~~~- 80 (188)
T TIGR00678 3 QLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDL-HRLEPEGQSIKVDQ- 80 (188)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcE-EEeccccCcCCHHH-
Confidence 45566666655 5788999999999999999988762110 11122 122111 1111111
Q ss_pred HHHHHHhcCCCCccccccCHHHHHHHHHHHhCCceEEEEEecCCCc--cccccccccCCCCCCCCcEEEEecCCH-HHHh
Q 002657 224 QEIIGGKIGLMNESWKSKSLQEKSLDIFKILGEKKFVLLLDDLWQR--VDLTKVGVPLPSPQSSASKVVFTTRSE-EICG 300 (896)
Q Consensus 224 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~~s~iivTtR~~-~v~~ 300 (896)
.+++.+.+.... ..+.+-++|+||+... ...+.+...+. .....+.+|++|++. .+..
T Consensus 81 i~~i~~~~~~~~------------------~~~~~kviiide~~~l~~~~~~~Ll~~le-~~~~~~~~il~~~~~~~l~~ 141 (188)
T TIGR00678 81 VRELVEFLSRTP------------------QESGRRVVIIEDAERMNEAAANALLKTLE-EPPPNTLFILITPSPEKLLP 141 (188)
T ss_pred HHHHHHHHccCc------------------ccCCeEEEEEechhhhCHHHHHHHHHHhc-CCCCCeEEEEEECChHhChH
Confidence 111122111100 1245668999999643 33445554444 334456666666544 2221
Q ss_pred -hhccCcceeccCCChHhHHHHHHHHhcCcccCCCCChHHHHHHHHHHhCCCchH
Q 002657 301 -LMEAQKKFKVACLSDKDAWELFCHKVGEETLNNHPDIPELAQTVAKECGGMPLA 354 (896)
Q Consensus 301 -~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPla 354 (896)
.......+++.+++.++..+.+.+. + . -.+.+..|++.++|.|..
T Consensus 142 ~i~sr~~~~~~~~~~~~~~~~~l~~~-g--i------~~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 142 TIRSRCQVLPFPPLSEEALLQWLIRQ-G--I------SEEAAELLLALAGGSPGA 187 (188)
T ss_pred HHHhhcEEeeCCCCCHHHHHHHHHHc-C--C------CHHHHHHHHHHcCCCccc
Confidence 1223468999999999999988876 1 1 145688999999998853
No 98
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.17 E-value=4.2e-05 Score=85.13 Aligned_cols=177 Identities=16% Similarity=0.182 Sum_probs=106.5
Q ss_pred ccchHHHHHHHHHHhccCCCe-EEEEEcCCCchHHHHHHHHHhhhccCC------------------CCCCeEEEEEeCC
Q 002657 156 VVGLQSQLEQVWRCLVEEPAG-IVGLYGMGGVGKTTLLTHINNKFLQVP------------------NDFDCVIWVVVSK 216 (896)
Q Consensus 156 ~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~------------------~~f~~~~wv~~~~ 216 (896)
+||.+..++.|.+.+..+... .+.++|+.|+||||+|+.+++...... +.+.-++.+..+.
T Consensus 15 liGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~eidaas 94 (491)
T PRK14964 15 LVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEIDAAS 94 (491)
T ss_pred hcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEEeccc
Confidence 899999999998888877665 788999999999999999987541100 0111123333322
Q ss_pred ccCHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHhCCceEEEEEecCCCc--cccccccccCCCCCCCCcEEEEecC
Q 002657 217 DLRLENIQEIIGGKIGLMNESWKSKSLQEKSLDIFKILGEKKFVLLLDDLWQR--VDLTKVGVPLPSPQSSASKVVFTTR 294 (896)
Q Consensus 217 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~~s~iivTtR 294 (896)
...+.++ +++.+..... -..+++-++|+|++... .....+...+. ......++|++|.
T Consensus 95 ~~~vddI-R~Iie~~~~~------------------P~~~~~KVvIIDEah~Ls~~A~NaLLK~LE-ePp~~v~fIlatt 154 (491)
T PRK14964 95 NTSVDDI-KVILENSCYL------------------PISSKFKVYIIDEVHMLSNSAFNALLKTLE-EPAPHVKFILATT 154 (491)
T ss_pred CCCHHHH-HHHHHHHHhc------------------cccCCceEEEEeChHhCCHHHHHHHHHHHh-CCCCCeEEEEEeC
Confidence 2222221 1121111100 01245568999999643 23444444443 3334566665554
Q ss_pred -CHHHH-hhhccCcceeccCCChHhHHHHHHHHhcCcccCCCCChHHHHHHHHHHhCCCchHH
Q 002657 295 -SEEIC-GLMEAQKKFKVACLSDKDAWELFCHKVGEETLNNHPDIPELAQTVAKECGGMPLAL 355 (896)
Q Consensus 295 -~~~v~-~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai 355 (896)
...+. ........+++.+++.++..+.+.+.+......- -.+....|++.++|.+-.+
T Consensus 155 e~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i---~~eAL~lIa~~s~GslR~a 214 (491)
T PRK14964 155 EVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEH---DEESLKLIAENSSGSMRNA 214 (491)
T ss_pred ChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHH
Confidence 34442 2234457899999999999999998876543211 2455778999999877543
No 99
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.16 E-value=4.2e-06 Score=87.93 Aligned_cols=293 Identities=19% Similarity=0.214 Sum_probs=182.5
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHhhhccCCCCC-CeEEEEEeCCccCHHHHHHHHHHhcCCCCccccccCHHHHHHHHHH
Q 002657 174 PAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDF-DCVIWVVVSKDLRLENIQEIIGGKIGLMNESWKSKSLQEKSLDIFK 252 (896)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 252 (896)
..+-+.++|.|||||||++-++.. . ...| +.+.++....-.+...+.-.+...++.+.. +-+.....+..
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~-~---~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~-----~g~~~~~~~~~ 83 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH-A---ASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQ-----PGDSAVDTLVR 83 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh-H---hhhcccceeeeeccccCchhHhHHHHHhhcccccc-----cchHHHHHHHH
Confidence 467899999999999999999988 4 3445 456677776666777777777776776542 22334456677
Q ss_pred HhCCceEEEEEecCCCccc-cccccccCCCCCCCCcEEEEecCCHHHHhhhccCcceeccCCChH-hHHHHHHHHhcCcc
Q 002657 253 ILGEKKFVLLLDDLWQRVD-LTKVGVPLPSPQSSASKVVFTTRSEEICGLMEAQKKFKVACLSDK-DAWELFCHKVGEET 330 (896)
Q Consensus 253 ~l~~kr~LlVlDdv~~~~~-~~~l~~~~~~~~~~~s~iivTtR~~~v~~~~~~~~~~~l~~L~~~-e~~~Lf~~~~~~~~ 330 (896)
...++|.++|+||-.+..+ -..+...+- .+...-.|+.|+|... .........+.+|+.. ++.++|...+....
T Consensus 84 ~~~~rr~llvldncehl~~~~a~~i~all-~~~~~~~~~atsre~~---l~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~ 159 (414)
T COG3903 84 RIGDRRALLVLDNCEHLLDACAALIVALL-GACPRLAILATSREAI---LVAGEVHRRVPSLSLFDEAIELFVCRAVLVA 159 (414)
T ss_pred HHhhhhHHHHhcCcHHHHHHHHHHHHHHH-ccchhhhhHHHhHhhh---cccccccccCCccccCCchhHHHHHHHHHhc
Confidence 7888999999999754322 111111121 3344556888888652 2234556778888765 78899888764332
Q ss_pred --cCCCCChHHHHHHHHHHhCCCchHHHHHHHhhcCCCCHHH---HHHHHHHHhcccCCCCCCccchhhhHHhhhcCCCc
Q 002657 331 --LNNHPDIPELAQTVAKECGGMPLALITIGRAMSCKRTPQE---WRHAIQVLRTTASEFPGLGNEVYPLLKFSYESLPN 405 (896)
Q Consensus 331 --~~~~~~~~~~~~~i~~~~~GlPlai~~~~~~l~~~~~~~~---w~~~l~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~ 405 (896)
..-...-.....+|.++.+|.|++|...++..+.-..... ..+-...+........--+......+.+||.-|..
T Consensus 160 ~~f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtg 239 (414)
T COG3903 160 LSFWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTG 239 (414)
T ss_pred cceeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhh
Confidence 1112233567899999999999999999887776322211 11111122221111111123567889999999998
Q ss_pred chhhHHhhhhccCCCCccccHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHHHhcccccc---CCccchhhHHHHhHH
Q 002657 406 DIVRSCLLYCSLYPEDYRISKENLIDCWIGESFLNERVKFEVQNQGYYILGILVHACLLEEV---GEDEVKMHDVIRDMA 482 (896)
Q Consensus 406 ~~~k~cfl~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~l~~L~~~~ll~~~---~~~~~~mHdlv~d~a 482 (896)
..+.-|--++.|...|.-. ...|.+.|-... .........+..+++.+++..- +...|+.-+-+|.|+
T Consensus 240 -we~~~~~rLa~~~g~f~~~----l~~~~a~g~~~~----~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~Ya 310 (414)
T COG3903 240 -WERALFGRLAVFVGGFDLG----LALAVAAGADVD----VPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYA 310 (414)
T ss_pred -HHHHHhcchhhhhhhhccc----HHHHHhcCCccc----cchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHH
Confidence 7888888899988766543 334554442210 0122333446677888887653 445666666677776
Q ss_pred Hhhhcc
Q 002657 483 LWIACD 488 (896)
Q Consensus 483 ~~~~~~ 488 (896)
..+-.+
T Consensus 311 laeL~r 316 (414)
T COG3903 311 LAELHR 316 (414)
T ss_pred HHHHHh
Confidence 655443
No 100
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.16 E-value=2.6e-05 Score=83.96 Aligned_cols=195 Identities=13% Similarity=0.126 Sum_probs=109.9
Q ss_pred ccchHHHHHHHHHHhccCCCe-EEEEEcCCCchHHHHHHHHHhhhccCCC-CCCeEEEEEeCCccCHHHHHHHHHHh---
Q 002657 156 VVGLQSQLEQVWRCLVEEPAG-IVGLYGMGGVGKTTLLTHINNKFLQVPN-DFDCVIWVVVSKDLRLENIQEIIGGK--- 230 (896)
Q Consensus 156 ~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~-~f~~~~wv~~~~~~~~~~~~~~i~~~--- 230 (896)
++|.++..+.+...+..+... .+.|+|+.|+||||+|+.+++....... .+... ............+.+...
T Consensus 25 l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~---~~~~~~~~c~~c~~i~~~~hP 101 (351)
T PRK09112 25 LFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPE---TLADPDPASPVWRQIAQGAHP 101 (351)
T ss_pred ccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcc---ccCCCCCCCHHHHHHHcCCCC
Confidence 899999999999999887643 5889999999999999999988621100 01111 001111111223333222
Q ss_pred ----cCCCCcc----c-cccCHHHHHHHHHHHhC-----CceEEEEEecCCCc--cccccccccCCCCCCCCcEEEEecC
Q 002657 231 ----IGLMNES----W-KSKSLQEKSLDIFKILG-----EKKFVLLLDDLWQR--VDLTKVGVPLPSPQSSASKVVFTTR 294 (896)
Q Consensus 231 ----l~~~~~~----~-~~~~~~~~~~~l~~~l~-----~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~~s~iivTtR 294 (896)
+..+.+. . ..-..++ +..+.+++. +++-++|+|+++.. .....+...+........-|++|++
T Consensus 102 dl~~l~~~~~~~~~~~~~~I~vd~-iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fiLit~~ 180 (351)
T PRK09112 102 NLLHITRPFDEKTGKFKTAITVDE-IRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALFILISHS 180 (351)
T ss_pred CEEEeecccccccccccccCCHHH-HHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEEEEECC
Confidence 1000000 0 0111222 234444443 46679999999643 2333343333311223334555555
Q ss_pred CHHHH-hhhccCcceeccCCChHhHHHHHHHHhcCcccCCCCChHHHHHHHHHHhCCCchHHHHHH
Q 002657 295 SEEIC-GLMEAQKKFKVACLSDKDAWELFCHKVGEETLNNHPDIPELAQTVAKECGGMPLALITIG 359 (896)
Q Consensus 295 ~~~v~-~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~~ 359 (896)
...+. ...+....+++.+++.++..+++.+..... . --.+....+++.++|.|.....+.
T Consensus 181 ~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~----~-~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 181 SGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQ----G-SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred hhhccHHHHhhccEEEecCCCHHHHHHHHHHhhccc----C-CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 43332 122234689999999999999998743211 1 114557889999999998665443
No 101
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.15 E-value=2.9e-05 Score=87.91 Aligned_cols=178 Identities=16% Similarity=0.141 Sum_probs=104.9
Q ss_pred ccchHHHHHHHHHHhccCCCe-EEEEEcCCCchHHHHHHHHHhhhccCC------------------CCCCeEEEEEeCC
Q 002657 156 VVGLQSQLEQVWRCLVEEPAG-IVGLYGMGGVGKTTLLTHINNKFLQVP------------------NDFDCVIWVVVSK 216 (896)
Q Consensus 156 ~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~------------------~~f~~~~wv~~~~ 216 (896)
+||-+..++.|.+++..+... .+.++|+.|+||||+|+.+++...... +.|.-++.+..+.
T Consensus 18 ivGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~eidaas 97 (509)
T PRK14958 18 VIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEVDAAS 97 (509)
T ss_pred hcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEEEcccc
Confidence 899999999999999887655 468999999999999999988762100 0111122222222
Q ss_pred ccCHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHhCCceEEEEEecCCCc--cccccccccCCCCCCCCcEEEEecC
Q 002657 217 DLRLENIQEIIGGKIGLMNESWKSKSLQEKSLDIFKILGEKKFVLLLDDLWQR--VDLTKVGVPLPSPQSSASKVVFTTR 294 (896)
Q Consensus 217 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~~s~iivTtR 294 (896)
...+.++ +++++.+... -..++.-++|+|+++.. .....+...+. .....+++|++|.
T Consensus 98 ~~~v~~i-R~l~~~~~~~------------------p~~~~~kV~iIDE~~~ls~~a~naLLk~LE-epp~~~~fIlatt 157 (509)
T PRK14958 98 RTKVEDT-RELLDNIPYA------------------PTKGRFKVYLIDEVHMLSGHSFNALLKTLE-EPPSHVKFILATT 157 (509)
T ss_pred cCCHHHH-HHHHHHHhhc------------------cccCCcEEEEEEChHhcCHHHHHHHHHHHh-ccCCCeEEEEEEC
Confidence 2222221 1222211110 01245568999999743 33444444443 2334566665554
Q ss_pred CH-HHH-hhhccCcceeccCCChHhHHHHHHHHhcCcccCCCCChHHHHHHHHHHhCCCchHHH
Q 002657 295 SE-EIC-GLMEAQKKFKVACLSDKDAWELFCHKVGEETLNNHPDIPELAQTVAKECGGMPLALI 356 (896)
Q Consensus 295 ~~-~v~-~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~ 356 (896)
+. .+. ...+....+++++++.++....+.+.+....... -.+....|++.++|.+.-+.
T Consensus 158 d~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~---~~~al~~ia~~s~GslR~al 218 (509)
T PRK14958 158 DHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEF---ENAALDLLARAANGSVRDAL 218 (509)
T ss_pred ChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCcHHHHH
Confidence 43 332 2233456789999999998887777665433111 13456788899998775443
No 102
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.14 E-value=5.2e-05 Score=82.83 Aligned_cols=170 Identities=12% Similarity=0.096 Sum_probs=100.6
Q ss_pred ccchHHHHHHHHHHhccCC----------CeEEEEEcCCCchHHHHHHHHHhhhccCC------------------CCCC
Q 002657 156 VVGLQSQLEQVWRCLVEEP----------AGIVGLYGMGGVGKTTLLTHINNKFLQVP------------------NDFD 207 (896)
Q Consensus 156 ~vGr~~~~~~l~~~L~~~~----------~~vi~I~G~gGiGKTtLa~~v~~~~~~~~------------------~~f~ 207 (896)
++|.+..++.|.+++..+. ..-+.++|++|+|||++|+.+++...... .|.|
T Consensus 7 IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~hpD 86 (394)
T PRK07940 7 LVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTHPD 86 (394)
T ss_pred ccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC
Confidence 7899999999999997753 35588999999999999999987652100 0111
Q ss_pred eEEEEEeCCccCHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHh-----CCceEEEEEecCCCc--cccccccccCC
Q 002657 208 CVIWVVVSKDLRLENIQEIIGGKIGLMNESWKSKSLQEKSLDIFKIL-----GEKKFVLLLDDLWQR--VDLTKVGVPLP 280 (896)
Q Consensus 208 ~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~--~~~~~l~~~~~ 280 (896)
+.++.... .....++. ..+.+.. .+++-++|+|+++.. .....+...+.
T Consensus 87 -~~~i~~~~----------------------~~i~i~~i-R~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LE 142 (394)
T PRK07940 87 -VRVVAPEG----------------------LSIGVDEV-RELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVE 142 (394)
T ss_pred -EEEecccc----------------------ccCCHHHH-HHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhh
Confidence 11111110 00111111 1222222 244558888999643 22333333333
Q ss_pred CCCCCCcEEEEecCCH-HHH-hhhccCcceeccCCChHhHHHHHHHHhcCcccCCCCChHHHHHHHHHHhCCCchHHHHH
Q 002657 281 SPQSSASKVVFTTRSE-EIC-GLMEAQKKFKVACLSDKDAWELFCHKVGEETLNNHPDIPELAQTVAKECGGMPLALITI 358 (896)
Q Consensus 281 ~~~~~~s~iivTtR~~-~v~-~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~ 358 (896)
....+..+|++|.+. .+. ...+....+.+.+++.++..+.+.+..+. ..+.+..++..++|.|.....+
T Consensus 143 -ep~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~~--------~~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 143 -EPPPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDGV--------DPETARRAARASQGHIGRARRL 213 (394)
T ss_pred -cCCCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcCC--------CHHHHHHHHHHcCCCHHHHHHH
Confidence 223345555555543 333 22334568999999999999888754321 1355788999999999765443
No 103
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.13 E-value=4.3e-05 Score=86.39 Aligned_cols=193 Identities=13% Similarity=0.095 Sum_probs=104.9
Q ss_pred ccchHHHHHHHHHHhccCCC-eEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHhcCCC
Q 002657 156 VVGLQSQLEQVWRCLVEEPA-GIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDLRLENIQEIIGGKIGLM 234 (896)
Q Consensus 156 ~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 234 (896)
++|++..++.+.+++..+.. ..+.++|+.|+||||+|+.+++.... .. |.... ........+.+.......
T Consensus 18 IIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C-~~------~~~~~-~Cg~C~sCr~i~~~~h~D 89 (605)
T PRK05896 18 IIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINC-LN------PKDGD-CCNSCSVCESINTNQSVD 89 (605)
T ss_pred hcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcC-CC------CCCCC-CCcccHHHHHHHcCCCCc
Confidence 89999999999999977654 46889999999999999999987621 11 11100 001111111111110000
Q ss_pred Cccc---cccCHHH---HHHHHHHH-hCCceEEEEEecCCCc--cccccccccCCCCCCCCcEEEE-ecCCHHHH-hhhc
Q 002657 235 NESW---KSKSLQE---KSLDIFKI-LGEKKFVLLLDDLWQR--VDLTKVGVPLPSPQSSASKVVF-TTRSEEIC-GLME 303 (896)
Q Consensus 235 ~~~~---~~~~~~~---~~~~l~~~-l~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~~s~iiv-TtR~~~v~-~~~~ 303 (896)
.-.. .....++ +...+... ..+++-++|+|+++.. ..+..+...+. .......+|+ |+....+. ....
T Consensus 90 iieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLE-EPp~~tvfIL~Tt~~~KLl~TI~S 168 (605)
T PRK05896 90 IVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLE-EPPKHVVFIFATTEFQKIPLTIIS 168 (605)
T ss_pred eEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHH-hCCCcEEEEEECCChHhhhHHHHh
Confidence 0000 0011111 11111110 1123446999999643 33444444433 2233455554 44443342 2233
Q ss_pred cCcceeccCCChHhHHHHHHHHhcCcccCCCCChHHHHHHHHHHhCCCch-HHHHHHH
Q 002657 304 AQKKFKVACLSDKDAWELFCHKVGEETLNNHPDIPELAQTVAKECGGMPL-ALITIGR 360 (896)
Q Consensus 304 ~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPl-ai~~~~~ 360 (896)
....+++.+++.++....+.+.+......- -.+.+..+++.++|.+- |+..+-.
T Consensus 169 Rcq~ieF~~Ls~~eL~~~L~~il~kegi~I---s~eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 169 RCQRYNFKKLNNSELQELLKSIAKKEKIKI---EDNAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred hhhhcccCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 456899999999999998888765432111 14557889999999664 4444433
No 104
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.13 E-value=4.2e-07 Score=101.76 Aligned_cols=128 Identities=25% Similarity=0.383 Sum_probs=104.3
Q ss_pred CCCcccceEEEeeccccccccc-CCCCCCccEEecccccccccchhhhccCCCCcEEEccCCcccccccccccCCCCCCE
Q 002657 510 VRGWENVSRLSLMQNRIKNLSE-IPKCPHLLTLFLNSNELKIITNDFFQFMPSLKVLSLSRNRRLTNLQLGISKLVSLQH 588 (896)
Q Consensus 510 ~~~~~~lr~L~l~~~~~~~l~~-~~~~~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~ 588 (896)
...+.++..|++.+|.+..+.. +..+++|++|++++|.|+.+.. +..++.|+.|++++| .+..++ .+..+..|+.
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N-~i~~~~-~~~~l~~L~~ 166 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGN-LISDIS-GLESLKSLKL 166 (414)
T ss_pred cccccceeeeeccccchhhcccchhhhhcchheeccccccccccc--hhhccchhhheeccC-cchhcc-CCccchhhhc
Confidence 3445689999999999999988 8999999999999999998887 778899999999999 888876 6777999999
Q ss_pred EeccCCCccccchh-hhcCCCCCEeeccccccccCCcHHHHhccccccEEEeeccCC
Q 002657 589 LDLSLTNIEKLSGE-LKALVNLKCLNLEYTWSLVTIPQQLIASFLRLHVLRMFGVGD 644 (896)
Q Consensus 589 L~Ls~~~i~~lp~~-l~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~ 644 (896)
+++++|.+..++.. ...+.+|+.+++.+| .+..+.. +..+..+..+++..+..
T Consensus 167 l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n-~i~~i~~--~~~~~~l~~~~l~~n~i 220 (414)
T KOG0531|consen 167 LDLSYNRIVDIENDELSELISLEELDLGGN-SIREIEG--LDLLKKLVLLSLLDNKI 220 (414)
T ss_pred ccCCcchhhhhhhhhhhhccchHHHhccCC-chhcccc--hHHHHHHHHhhcccccc
Confidence 99999999988764 588999999999999 4554443 44444555555554433
No 105
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.12 E-value=3.7e-05 Score=88.13 Aligned_cols=192 Identities=13% Similarity=0.136 Sum_probs=105.7
Q ss_pred ccchHHHHHHHHHHhccCCC-eEEEEEcCCCchHHHHHHHHHhhhccCC-CCCCeEEEEEeCCccCHHHHHHHHHHhcCC
Q 002657 156 VVGLQSQLEQVWRCLVEEPA-GIVGLYGMGGVGKTTLLTHINNKFLQVP-NDFDCVIWVVVSKDLRLENIQEIIGGKIGL 233 (896)
Q Consensus 156 ~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 233 (896)
+||.+..++.|.+++..+.. ..+.++|+.|+||||+|+.+++...... ........-.+ .....-+.|...-..
T Consensus 18 viGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pC----g~C~~C~~i~~g~h~ 93 (618)
T PRK14951 18 MVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPC----GVCQACRDIDSGRFV 93 (618)
T ss_pred hcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCC----CccHHHHHHHcCCCC
Confidence 89999999999999988765 4568999999999999999987762100 00000000000 111111111100000
Q ss_pred C---CccccccCHHHHHHHHHHHh-----CCceEEEEEecCCCc--cccccccccCCCCCCCCcEEEEec-CCHHHH-hh
Q 002657 234 M---NESWKSKSLQEKSLDIFKIL-----GEKKFVLLLDDLWQR--VDLTKVGVPLPSPQSSASKVVFTT-RSEEIC-GL 301 (896)
Q Consensus 234 ~---~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~~s~iivTt-R~~~v~-~~ 301 (896)
. .+.......++... +.+.. .++.-++|||+++.. ..+..+...+. ......++|++| ....+. ..
T Consensus 94 D~~eldaas~~~Vd~iRe-li~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLE-EPP~~~~fIL~Ttd~~kil~TI 171 (618)
T PRK14951 94 DYTELDAASNRGVDEVQQ-LLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLE-EPPEYLKFVLATTDPQKVPVTV 171 (618)
T ss_pred ceeecCcccccCHHHHHH-HHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcc-cCCCCeEEEEEECCchhhhHHH
Confidence 0 00000111122111 11111 234458899999753 33444544443 223455555554 434332 23
Q ss_pred hccCcceeccCCChHhHHHHHHHHhcCcccCCCCChHHHHHHHHHHhCCCchHHH
Q 002657 302 MEAQKKFKVACLSDKDAWELFCHKVGEETLNNHPDIPELAQTVAKECGGMPLALI 356 (896)
Q Consensus 302 ~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~ 356 (896)
.+....+++++++.++..+.+.+.+....... -.+....|++.++|.+--+.
T Consensus 172 lSRc~~~~f~~Ls~eei~~~L~~i~~~egi~i---e~~AL~~La~~s~GslR~al 223 (618)
T PRK14951 172 LSRCLQFNLRPMAPETVLEHLTQVLAAENVPA---EPQALRLLARAARGSMRDAL 223 (618)
T ss_pred HHhceeeecCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHH
Confidence 34467899999999999999988775443221 24567888999998775443
No 106
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.12 E-value=2.7e-05 Score=89.34 Aligned_cols=191 Identities=16% Similarity=0.107 Sum_probs=106.5
Q ss_pred ccchHHHHHHHHHHhccCCCeE-EEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHhcC--
Q 002657 156 VVGLQSQLEQVWRCLVEEPAGI-VGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDLRLENIQEIIGGKIG-- 232 (896)
Q Consensus 156 ~vGr~~~~~~l~~~L~~~~~~v-i~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~-- 232 (896)
+||.+..++.|...+..+...- +.++|+.|+||||+|+.+++.... ...+. ..........+.|...-.
T Consensus 18 ivGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c-~~~~~-------~~pCg~C~~C~~i~~g~~~D 89 (647)
T PRK07994 18 VVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNC-ETGIT-------ATPCGECDNCREIEQGRFVD 89 (647)
T ss_pred hcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhh-ccCCC-------CCCCCCCHHHHHHHcCCCCC
Confidence 8999999999999998876544 678999999999999999887621 10000 000011111111211000
Q ss_pred ---CCCc-cccccCHHHHHHHHHH-HhCCceEEEEEecCCCc--cccccccccCCCCCCCCcEEEE-ecCCHHHH-hhhc
Q 002657 233 ---LMNE-SWKSKSLQEKSLDIFK-ILGEKKFVLLLDDLWQR--VDLTKVGVPLPSPQSSASKVVF-TTRSEEIC-GLME 303 (896)
Q Consensus 233 ---~~~~-~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~~s~iiv-TtR~~~v~-~~~~ 303 (896)
.... .....+..++...+.. -..+++-++|||+++.. .....+...+. ......++|+ ||....+. ...+
T Consensus 90 ~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLE-EPp~~v~FIL~Tt~~~kLl~TI~S 168 (647)
T PRK07994 90 LIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLE-EPPEHVKFLLATTDPQKLPVTILS 168 (647)
T ss_pred ceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHH-cCCCCeEEEEecCCccccchHHHh
Confidence 0000 0000111112222111 12356679999999643 33444443333 2233445555 44444442 2233
Q ss_pred cCcceeccCCChHhHHHHHHHHhcCcccCCCCChHHHHHHHHHHhCCCchHHHHH
Q 002657 304 AQKKFKVACLSDKDAWELFCHKVGEETLNNHPDIPELAQTVAKECGGMPLALITI 358 (896)
Q Consensus 304 ~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~ 358 (896)
....|++++++.++..+.+.+.+...... --.+....|++.++|.+--+..+
T Consensus 169 RC~~~~f~~Ls~~ei~~~L~~il~~e~i~---~e~~aL~~Ia~~s~Gs~R~Al~l 220 (647)
T PRK07994 169 RCLQFHLKALDVEQIRQQLEHILQAEQIP---FEPRALQLLARAADGSMRDALSL 220 (647)
T ss_pred hheEeeCCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHH
Confidence 45789999999999999998876433211 12455678999999987644433
No 107
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.12 E-value=0.00019 Score=84.37 Aligned_cols=169 Identities=21% Similarity=0.277 Sum_probs=98.5
Q ss_pred ccchHHHHH---HHHHHhccCCCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHhcC
Q 002657 156 VVGLQSQLE---QVWRCLVEEPAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDLRLENIQEIIGGKIG 232 (896)
Q Consensus 156 ~vGr~~~~~---~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 232 (896)
++|.+..+. .+.+.+..+....+.++|++|+||||+|+.+++.. ...|.. +..+. ....+
T Consensus 30 ~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~---~~~f~~---lna~~-~~i~d---------- 92 (725)
T PRK13341 30 FVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHT---RAHFSS---LNAVL-AGVKD---------- 92 (725)
T ss_pred hcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHh---cCccee---ehhhh-hhhHH----------
Confidence 789888774 46666777777788999999999999999999875 333411 11110 00000
Q ss_pred CCCccccccCHHHHHHHHHHHh--CCceEEEEEecCCCc--cccccccccCCCCCCCCcEEEE--ecCCHH--H-Hhhhc
Q 002657 233 LMNESWKSKSLQEKSLDIFKIL--GEKKFVLLLDDLWQR--VDLTKVGVPLPSPQSSASKVVF--TTRSEE--I-CGLME 303 (896)
Q Consensus 233 ~~~~~~~~~~~~~~~~~l~~~l--~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~~s~iiv--TtR~~~--v-~~~~~ 303 (896)
..+......+.+ .+++.++||||++.. ..++.+...+ ..|+.++| ||.+.. + ....+
T Consensus 93 ----------ir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~l----E~g~IiLI~aTTenp~~~l~~aL~S 158 (725)
T PRK13341 93 ----------LRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWV----ENGTITLIGATTENPYFEVNKALVS 158 (725)
T ss_pred ----------HHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHh----cCceEEEEEecCCChHhhhhhHhhc
Confidence 111111221222 246779999999643 3344443322 23455555 344432 1 11222
Q ss_pred cCcceeccCCChHhHHHHHHHHhcCcc----cCCCCChHHHHHHHHHHhCCCchHH
Q 002657 304 AQKKFKVACLSDKDAWELFCHKVGEET----LNNHPDIPELAQTVAKECGGMPLAL 355 (896)
Q Consensus 304 ~~~~~~l~~L~~~e~~~Lf~~~~~~~~----~~~~~~~~~~~~~i~~~~~GlPlai 355 (896)
....+.+++++.++...++.+.+.... .....--++....|++.+.|..-.+
T Consensus 159 R~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R~l 214 (725)
T PRK13341 159 RSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDARSL 214 (725)
T ss_pred cccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHHHH
Confidence 346799999999999999988764210 0011122566788889998875433
No 108
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.10 E-value=2.8e-05 Score=86.06 Aligned_cols=194 Identities=12% Similarity=0.087 Sum_probs=107.2
Q ss_pred ccchHHHHHHHHHHhccCCCe-EEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEE-eCCccCHHHHHHHHHHhcCC
Q 002657 156 VVGLQSQLEQVWRCLVEEPAG-IVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVV-VSKDLRLENIQEIIGGKIGL 233 (896)
Q Consensus 156 ~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~-~~~~~~~~~~~~~i~~~l~~ 233 (896)
++|.+..++.|..++..+... .+.++|+.|+||||+|+.+++... -........|.. +.........-+.+......
T Consensus 18 iiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~-c~~~~~~~~~~~~~~~~c~~c~~c~~~~~~~~~ 96 (397)
T PRK14955 18 ITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVN-CQRMIDDADYLQEVTEPCGECESCRDFDAGTSL 96 (397)
T ss_pred ccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhc-CCCCcCcccccccCCCCCCCCHHHHHHhcCCCC
Confidence 899999999999999887665 477899999999999999998762 111111111110 00000001111111111000
Q ss_pred CCccc---cccCHHHHHHHHHHHh-----CCceEEEEEecCCCc--cccccccccCCCCCCCCcEEEEec-CCHHHHhh-
Q 002657 234 MNESW---KSKSLQEKSLDIFKIL-----GEKKFVLLLDDLWQR--VDLTKVGVPLPSPQSSASKVVFTT-RSEEICGL- 301 (896)
Q Consensus 234 ~~~~~---~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~~s~iivTt-R~~~v~~~- 301 (896)
....+ .....++.. .+.+.+ .+++-++|+|++... ..+..+...+. .....+.+|++| +...+...
T Consensus 97 n~~~~~~~~~~~id~Ir-~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LE-ep~~~t~~Il~t~~~~kl~~tl 174 (397)
T PRK14955 97 NISEFDAASNNSVDDIR-LLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLE-EPPPHAIFIFATTELHKIPATI 174 (397)
T ss_pred CeEeecccccCCHHHHH-HHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHh-cCCCCeEEEEEeCChHHhHHHH
Confidence 00000 011122222 222222 244558899999643 34555555554 333455655554 44444322
Q ss_pred hccCcceeccCCChHhHHHHHHHHhcCcccCCCCChHHHHHHHHHHhCCCchHH
Q 002657 302 MEAQKKFKVACLSDKDAWELFCHKVGEETLNNHPDIPELAQTVAKECGGMPLAL 355 (896)
Q Consensus 302 ~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai 355 (896)
......+++.+++.++..+.+...+...... --.+.+..+++.++|.+--+
T Consensus 175 ~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~~---i~~~al~~l~~~s~g~lr~a 225 (397)
T PRK14955 175 ASRCQRFNFKRIPLEEIQQQLQGICEAEGIS---VDADALQLIGRKAQGSMRDA 225 (397)
T ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHH
Confidence 2234578999999999998888876433211 12566889999999977544
No 109
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.10 E-value=4.3e-05 Score=87.30 Aligned_cols=191 Identities=14% Similarity=0.125 Sum_probs=103.8
Q ss_pred ccchHHHHHHHHHHhccCCC-eEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHH-HHHhcCC
Q 002657 156 VVGLQSQLEQVWRCLVEEPA-GIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDLRLENIQEI-IGGKIGL 233 (896)
Q Consensus 156 ~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~-i~~~l~~ 233 (896)
++|.+..++.|..++..++. ..+.++|+.|+||||+|+.+++... -..... +..+........+... ...-+..
T Consensus 18 IIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~Ln-C~~~~~---~~pCg~C~sCr~i~~g~~~DvlEi 93 (709)
T PRK08691 18 LVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLN-CENAQH---GEPCGVCQSCTQIDAGRYVDLLEI 93 (709)
T ss_pred HcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhc-ccCCCC---CCCCcccHHHHHHhccCccceEEE
Confidence 89999999999999988764 4678999999999999999988752 111000 0000000000000000 0000000
Q ss_pred CCccccccCHHHHHHHHHH--H--hCCceEEEEEecCCCcc--ccccccccCCCCCCCCcEEEEecCCH-HHH-hhhccC
Q 002657 234 MNESWKSKSLQEKSLDIFK--I--LGEKKFVLLLDDLWQRV--DLTKVGVPLPSPQSSASKVVFTTRSE-EIC-GLMEAQ 305 (896)
Q Consensus 234 ~~~~~~~~~~~~~~~~l~~--~--l~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~~s~iivTtR~~-~v~-~~~~~~ 305 (896)
.. ......+.+...+.. + ..+++-++|+|++.... ....+...+. ......++|++|.+. .+. ...+..
T Consensus 94 da--As~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLE-EPp~~v~fILaTtd~~kL~~TIrSRC 170 (709)
T PRK08691 94 DA--ASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLE-EPPEHVKFILATTDPHKVPVTVLSRC 170 (709)
T ss_pred ec--cccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHH-hCCCCcEEEEEeCCccccchHHHHHH
Confidence 00 001111111111110 0 12456689999996432 2333333332 223355666666543 221 222334
Q ss_pred cceeccCCChHhHHHHHHHHhcCcccCCCCChHHHHHHHHHHhCCCchHHH
Q 002657 306 KKFKVACLSDKDAWELFCHKVGEETLNNHPDIPELAQTVAKECGGMPLALI 356 (896)
Q Consensus 306 ~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~ 356 (896)
..+++.+++.++..+.+.+.+....... -.+....|++.++|.+.-+.
T Consensus 171 ~~f~f~~Ls~eeI~~~L~~Il~kEgi~i---d~eAL~~Ia~~A~GslRdAl 218 (709)
T PRK08691 171 LQFVLRNMTAQQVADHLAHVLDSEKIAY---EPPALQLLGRAAAGSMRDAL 218 (709)
T ss_pred hhhhcCCCCHHHHHHHHHHHHHHcCCCc---CHHHHHHHHHHhCCCHHHHH
Confidence 5788999999999999988776543221 24567889999999875443
No 110
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.09 E-value=2.1e-05 Score=80.32 Aligned_cols=168 Identities=13% Similarity=0.098 Sum_probs=95.0
Q ss_pred chHHHH-HHHHHHhcc-CCCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHhcCCCC
Q 002657 158 GLQSQL-EQVWRCLVE-EPAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDLRLENIQEIIGGKIGLMN 235 (896)
Q Consensus 158 Gr~~~~-~~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~ 235 (896)
|..... ..+.++... ...+.+.|+|..|+|||+||+.+++... .... ...+++..... ..+
T Consensus 23 ~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~--~~~~-~~~~i~~~~~~------~~~-------- 85 (227)
T PRK08903 23 GENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADAS--YGGR-NARYLDAASPL------LAF-------- 85 (227)
T ss_pred CCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHH--hCCC-cEEEEehHHhH------HHH--------
Confidence 544433 334444332 3456789999999999999999998752 1222 33445433211 000
Q ss_pred ccccccCHHHHHHHHHHHhCCceEEEEEecCCCccc--cccccccCCCCCCCCc-EEEEecCCHHHH--------hhhcc
Q 002657 236 ESWKSKSLQEKSLDIFKILGEKKFVLLLDDLWQRVD--LTKVGVPLPSPQSSAS-KVVFTTRSEEIC--------GLMEA 304 (896)
Q Consensus 236 ~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~--~~~l~~~~~~~~~~~s-~iivTtR~~~v~--------~~~~~ 304 (896)
... ...-+||+||+..... ...+...+......+. .||+|++..... +.+..
T Consensus 86 ----------------~~~-~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~ 148 (227)
T PRK08903 86 ----------------DFD-PEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGW 148 (227)
T ss_pred ----------------hhc-ccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhc
Confidence 011 1233788999964322 1222222221112333 467777643321 12233
Q ss_pred CcceeccCCChHhHHHHHHHHhcCcccCCCCChHHHHHHHHHHhCCCchHHHHHHHhh
Q 002657 305 QKKFKVACLSDKDAWELFCHKVGEETLNNHPDIPELAQTVAKECGGMPLALITIGRAM 362 (896)
Q Consensus 305 ~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~~~~l 362 (896)
...+++.++++++-..++.+.+...... --++....+++.+.|.+..+..+...+
T Consensus 149 ~~~i~l~pl~~~~~~~~l~~~~~~~~v~---l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 149 GLVYELKPLSDADKIAALKAAAAERGLQ---LADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred CeEEEecCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 4688999999988777777654332211 225678888889999998876665544
No 111
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.09 E-value=5.6e-05 Score=83.36 Aligned_cols=177 Identities=15% Similarity=0.172 Sum_probs=101.5
Q ss_pred ccchHHHHHHHHHHhccCCC-eEEEEEcCCCchHHHHHHHHHhhhccC-----CCCCCeEE-EEEeCCccCHHHHHHHHH
Q 002657 156 VVGLQSQLEQVWRCLVEEPA-GIVGLYGMGGVGKTTLLTHINNKFLQV-----PNDFDCVI-WVVVSKDLRLENIQEIIG 228 (896)
Q Consensus 156 ~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~-----~~~f~~~~-wv~~~~~~~~~~~~~~i~ 228 (896)
++|.+..++.+.+.+..+.. +.+.++|++|+||||+|+.+.+..... ...|...+ -+.........+ ...+.
T Consensus 19 iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-i~~l~ 97 (367)
T PRK14970 19 VVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVDD-IRNLI 97 (367)
T ss_pred cCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHHH-HHHHH
Confidence 89999999999999987654 478899999999999999998876210 01121111 111111111111 11112
Q ss_pred HhcCCCCccccccCHHHHHHHHHHHhCCceEEEEEecCCCc--cccccccccCCCCCCCCcEEEEec-CCHHHH-hhhcc
Q 002657 229 GKIGLMNESWKSKSLQEKSLDIFKILGEKKFVLLLDDLWQR--VDLTKVGVPLPSPQSSASKVVFTT-RSEEIC-GLMEA 304 (896)
Q Consensus 229 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~~s~iivTt-R~~~v~-~~~~~ 304 (896)
+++... . ..+++-++++|++... ..+..+...+. .....+.+|++| ....+. .....
T Consensus 98 ~~~~~~-----------------p-~~~~~kiviIDE~~~l~~~~~~~ll~~le-~~~~~~~~Il~~~~~~kl~~~l~sr 158 (367)
T PRK14970 98 DQVRIP-----------------P-QTGKYKIYIIDEVHMLSSAAFNAFLKTLE-EPPAHAIFILATTEKHKIIPTILSR 158 (367)
T ss_pred HHHhhc-----------------c-ccCCcEEEEEeChhhcCHHHHHHHHHHHh-CCCCceEEEEEeCCcccCCHHHHhc
Confidence 211100 0 1234557999998643 22444433332 223344555544 333332 22233
Q ss_pred CcceeccCCChHhHHHHHHHHhcCcccCCCCChHHHHHHHHHHhCCCchHH
Q 002657 305 QKKFKVACLSDKDAWELFCHKVGEETLNNHPDIPELAQTVAKECGGMPLAL 355 (896)
Q Consensus 305 ~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai 355 (896)
...++..++++++....+.+.+......-+ .+.+..+++.++|.+-.+
T Consensus 159 ~~~v~~~~~~~~~l~~~l~~~~~~~g~~i~---~~al~~l~~~~~gdlr~~ 206 (367)
T PRK14970 159 CQIFDFKRITIKDIKEHLAGIAVKEGIKFE---DDALHIIAQKADGALRDA 206 (367)
T ss_pred ceeEecCCccHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhCCCCHHHH
Confidence 457899999999999988887754432122 466788888999866533
No 112
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.08 E-value=1e-05 Score=86.12 Aligned_cols=93 Identities=16% Similarity=0.144 Sum_probs=63.5
Q ss_pred CCCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCc--cCHHHHHHHHHHhcCCCCccccccCHHHH----
Q 002657 173 EPAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKD--LRLENIQEIIGGKIGLMNESWKSKSLQEK---- 246 (896)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~~~~~~---- 246 (896)
+.-..++|+|++|+|||||++.+++.. . ..+|+..+||.+.+. .++.++++.+...+-...-..........
T Consensus 166 g~Gq~~~IvG~~g~GKTtL~~~i~~~I-~-~nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v 243 (415)
T TIGR00767 166 GKGQRGLIVAPPKAGKTVLLQKIAQAI-T-RNHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMV 243 (415)
T ss_pred CCCCEEEEECCCCCChhHHHHHHHHhh-c-ccCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHH
Confidence 456789999999999999999999987 3 348999999999876 78999999995443221110011111111
Q ss_pred HHHHHHH-hCCceEEEEEecCC
Q 002657 247 SLDIFKI-LGEKKFVLLLDDLW 267 (896)
Q Consensus 247 ~~~l~~~-l~~kr~LlVlDdv~ 267 (896)
.+..... -++++++|++|++.
T Consensus 244 ~e~Ae~~~~~GkdVVLlIDEit 265 (415)
T TIGR00767 244 IEKAKRLVEHKKDVVILLDSIT 265 (415)
T ss_pred HHHHHHHHHcCCCeEEEEEChh
Confidence 1111222 35899999999994
No 113
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.08 E-value=2.2e-05 Score=87.68 Aligned_cols=167 Identities=11% Similarity=0.065 Sum_probs=103.9
Q ss_pred CeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHh
Q 002657 175 AGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDLRLENIQEIIGGKIGLMNESWKSKSLQEKSLDIFKIL 254 (896)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 254 (896)
..-+.|+|..|+|||+|++.+++.... ...-..+++++ ..++...+...++... .....+.+.+
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~-~~~~~~v~yv~------~~~f~~~~~~~l~~~~---------~~~~~~~~~~ 204 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIES-NFSDLKVSYMS------GDEFARKAVDILQKTH---------KEIEQFKNEI 204 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHH-hCCCCeEEEEE------HHHHHHHHHHHHHHhh---------hHHHHHHHHh
Confidence 356889999999999999999997521 12222344553 3456666666554210 1223344444
Q ss_pred CCceEEEEEecCCCcc---c-cccccccCCCCCCCCcEEEEecCCH---------HHHhhhccCcceeccCCChHhHHHH
Q 002657 255 GEKKFVLLLDDLWQRV---D-LTKVGVPLPSPQSSASKVVFTTRSE---------EICGLMEAQKKFKVACLSDKDAWEL 321 (896)
Q Consensus 255 ~~kr~LlVlDdv~~~~---~-~~~l~~~~~~~~~~~s~iivTtR~~---------~v~~~~~~~~~~~l~~L~~~e~~~L 321 (896)
+. .-+||+||+.... . .+.+...+......|..||+|+... .+.+.+..+-++.+++++.++-.++
T Consensus 205 ~~-~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~i 283 (450)
T PRK14087 205 CQ-NDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAI 283 (450)
T ss_pred cc-CCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHH
Confidence 43 3478899995432 1 2223222221123455788887643 2334445667889999999999999
Q ss_pred HHHHhcCcccCCCCChHHHHHHHHHHhCCCchHHHHHH
Q 002657 322 FCHKVGEETLNNHPDIPELAQTVAKECGGMPLALITIG 359 (896)
Q Consensus 322 f~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~~ 359 (896)
+.+++...... ..--+++..-|++.++|.|-.+..+.
T Consensus 284 L~~~~~~~gl~-~~l~~evl~~Ia~~~~gd~R~L~gaL 320 (450)
T PRK14087 284 IKKEIKNQNIK-QEVTEEAINFISNYYSDDVRKIKGSV 320 (450)
T ss_pred HHHHHHhcCCC-CCCCHHHHHHHHHccCCCHHHHHHHH
Confidence 99988643211 12336788999999999998775554
No 114
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.06 E-value=2.3e-05 Score=86.05 Aligned_cols=169 Identities=20% Similarity=0.256 Sum_probs=97.9
Q ss_pred ccchHHHHHHHHHHhcc-------------CCCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHH
Q 002657 156 VVGLQSQLEQVWRCLVE-------------EPAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDLRLEN 222 (896)
Q Consensus 156 ~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~ 222 (896)
+.|++..++++.+.+.. ...+-+.++|++|+|||++|+.+++.. ...| +.+.. ..
T Consensus 124 i~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l---~~~~-----~~v~~----~~ 191 (364)
T TIGR01242 124 IGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET---NATF-----IRVVG----SE 191 (364)
T ss_pred hCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhC---CCCE-----Eecch----HH
Confidence 78999999999887642 124568899999999999999999976 2333 22221 11
Q ss_pred HHHHHHHhcCCCCccccccCHHHHHHHHHHH-hCCceEEEEEecCCCcc----------------ccccccccCCC-CCC
Q 002657 223 IQEIIGGKIGLMNESWKSKSLQEKSLDIFKI-LGEKKFVLLLDDLWQRV----------------DLTKVGVPLPS-PQS 284 (896)
Q Consensus 223 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~----------------~~~~l~~~~~~-~~~ 284 (896)
+.... ++ ........+.+. -...+.+|++||++... .+..+...+.. ...
T Consensus 192 l~~~~---~g---------~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~ 259 (364)
T TIGR01242 192 LVRKY---IG---------EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPR 259 (364)
T ss_pred HHHHh---hh---------HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCC
Confidence 11110 11 011112222222 23467899999996421 01111111110 123
Q ss_pred CCcEEEEecCCHHH-----HhhhccCcceeccCCChHhHHHHHHHHhcCcccCCCCChHHHHHHHHHHhCCCc
Q 002657 285 SASKVVFTTRSEEI-----CGLMEAQKKFKVACLSDKDAWELFCHKVGEETLNNHPDIPELAQTVAKECGGMP 352 (896)
Q Consensus 285 ~~s~iivTtR~~~v-----~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~GlP 352 (896)
.+.+||.||...+. .+.......+.+...+.++..++|...+........-+ ...+++.+.|..
T Consensus 260 ~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~----~~~la~~t~g~s 328 (364)
T TIGR01242 260 GNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVD----LEAIAKMTEGAS 328 (364)
T ss_pred CCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCC----HHHHHHHcCCCC
Confidence 46778888875432 11112245789999999999999998876543222122 466777777754
No 115
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.06 E-value=4.4e-06 Score=59.45 Aligned_cols=38 Identities=37% Similarity=0.523 Sum_probs=17.0
Q ss_pred CCcEEEccCCcccccccccccCCCCCCEEeccCCCcccc
Q 002657 561 SLKVLSLSRNRRLTNLQLGISKLVSLQHLDLSLTNIEKL 599 (896)
Q Consensus 561 ~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~Ls~~~i~~l 599 (896)
+|++|++++| .++.+|..+++|++|++|++++|+++.+
T Consensus 2 ~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNN-QITDLPPELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp T-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred cceEEEccCC-CCcccCchHhCCCCCCEEEecCCCCCCC
Confidence 3444444444 4444444444444444444444444433
No 116
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.03 E-value=8.7e-07 Score=77.61 Aligned_cols=109 Identities=17% Similarity=0.282 Sum_probs=89.2
Q ss_pred ceEEEeecccccccc----cCCCCCCccEEecccccccccchhhhccCCCCcEEEccCCcccccccccccCCCCCCEEec
Q 002657 516 VSRLSLMQNRIKNLS----EIPKCPHLLTLFLNSNELKIITNDFFQFMPSLKVLSLSRNRRLTNLQLGISKLVSLQHLDL 591 (896)
Q Consensus 516 lr~L~l~~~~~~~l~----~~~~~~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~L 591 (896)
+..++++++.+-.++ .+.....|...+|++|.+.+.|+.+-..++.++.|+|++| .+..+|..+..++.|+.|++
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~n-eisdvPeE~Aam~aLr~lNl 107 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANN-EISDVPEELAAMPALRSLNL 107 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchh-hhhhchHHHhhhHHhhhccc
Confidence 344556666544332 2466778888999999999999987778889999999999 89999999999999999999
Q ss_pred cCCCccccchhhhcCCCCCEeeccccccccCCcHH
Q 002657 592 SLTNIEKLSGELKALVNLKCLNLEYTWSLVTIPQQ 626 (896)
Q Consensus 592 s~~~i~~lp~~l~~L~~L~~L~L~~~~~l~~lp~~ 626 (896)
+.|.+...|.-+..|.+|-.|+..+| ....+|.+
T Consensus 108 ~~N~l~~~p~vi~~L~~l~~Lds~~n-a~~eid~d 141 (177)
T KOG4579|consen 108 RFNPLNAEPRVIAPLIKLDMLDSPEN-ARAEIDVD 141 (177)
T ss_pred ccCccccchHHHHHHHhHHHhcCCCC-ccccCcHH
Confidence 99999999988888999999999888 56677765
No 117
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.03 E-value=5.6e-06 Score=58.92 Aligned_cols=41 Identities=39% Similarity=0.498 Sum_probs=35.2
Q ss_pred CCCCEEeccCCCccccchhhhcCCCCCEeeccccccccCCcH
Q 002657 584 VSLQHLDLSLTNIEKLSGELKALVNLKCLNLEYTWSLVTIPQ 625 (896)
Q Consensus 584 ~~L~~L~Ls~~~i~~lp~~l~~L~~L~~L~L~~~~~l~~lp~ 625 (896)
++|++|++++|+|+.+|..+++|++|++|++++| .+.++|.
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNN-PISDISP 41 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS-CCSBEGG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCC-CCCCCcC
Confidence 4799999999999999988999999999999999 6777764
No 118
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.00 E-value=8.9e-05 Score=85.27 Aligned_cols=192 Identities=11% Similarity=0.111 Sum_probs=106.9
Q ss_pred ccchHHHHHHHHHHhccCCCe-EEEEEcCCCchHHHHHHHHHhhhccCCCCCC--eEEEEEeCCccCHHHHHHHHHHhcC
Q 002657 156 VVGLQSQLEQVWRCLVEEPAG-IVGLYGMGGVGKTTLLTHINNKFLQVPNDFD--CVIWVVVSKDLRLENIQEIIGGKIG 232 (896)
Q Consensus 156 ~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~--~~~wv~~~~~~~~~~~~~~i~~~l~ 232 (896)
++|.+..++.|.+++..++.. -+.++|+.|+||||+|+.+++.... ..... ...+-.+... .--+.|...-.
T Consensus 26 liGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c-~~~~~~~~~~~~~cg~c----~~C~~i~~g~h 100 (598)
T PRK09111 26 LIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNY-EGPDGDGGPTIDLCGVG----EHCQAIMEGRH 100 (598)
T ss_pred hcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCc-CCccccCCCccccCccc----HHHHHHhcCCC
Confidence 899999999999999887654 6889999999999999999987621 11100 0000000100 11111211110
Q ss_pred CCCccc---cccCHHHHHHHHHHHh-----CCceEEEEEecCCCc--cccccccccCCCCCCCCcEEEEec-CCHHHH-h
Q 002657 233 LMNESW---KSKSLQEKSLDIFKIL-----GEKKFVLLLDDLWQR--VDLTKVGVPLPSPQSSASKVVFTT-RSEEIC-G 300 (896)
Q Consensus 233 ~~~~~~---~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~~s~iivTt-R~~~v~-~ 300 (896)
...-.+ .....++.. .+.+.+ .+++-++|+|++... .....+...+. .-..++.+|++| ....+. .
T Consensus 101 ~Dv~e~~a~s~~gvd~IR-eIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLE-ePp~~~~fIl~tte~~kll~t 178 (598)
T PRK09111 101 VDVLEMDAASHTGVDDIR-EIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLE-EPPPHVKFIFATTEIRKVPVT 178 (598)
T ss_pred CceEEecccccCCHHHHH-HHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHH-hCCCCeEEEEEeCChhhhhHH
Confidence 000000 011122211 122222 234557899999643 23444444443 233455565544 444332 2
Q ss_pred hhccCcceeccCCChHhHHHHHHHHhcCcccCCCCChHHHHHHHHHHhCCCchHHHH
Q 002657 301 LMEAQKKFKVACLSDKDAWELFCHKVGEETLNNHPDIPELAQTVAKECGGMPLALIT 357 (896)
Q Consensus 301 ~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~ 357 (896)
..+....+++.+++.++....+.+.+......- -.+....|++.++|.+.-+..
T Consensus 179 I~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i---~~eAl~lIa~~a~Gdlr~al~ 232 (598)
T PRK09111 179 VLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEV---EDEALALIARAAEGSVRDGLS 232 (598)
T ss_pred HHhheeEEEecCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHH
Confidence 223456899999999999999988775443111 145678899999998865543
No 119
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.00 E-value=9.8e-05 Score=84.29 Aligned_cols=180 Identities=16% Similarity=0.142 Sum_probs=104.1
Q ss_pred ccchHHHHHHHHHHhccCCCe-EEEEEcCCCchHHHHHHHHHhhhccCCC------------------CCCeEEEEEeCC
Q 002657 156 VVGLQSQLEQVWRCLVEEPAG-IVGLYGMGGVGKTTLLTHINNKFLQVPN------------------DFDCVIWVVVSK 216 (896)
Q Consensus 156 ~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~------------------~f~~~~wv~~~~ 216 (896)
++|.+..++.+..++..+... .+.++|+.|+||||+|+.+++....... .|.-.+++..+.
T Consensus 18 ivGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ei~~~~ 97 (527)
T PRK14969 18 LVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIEVDAAS 97 (527)
T ss_pred hcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeEeeccc
Confidence 899999999999999887654 4679999999999999999887621000 011112221111
Q ss_pred ccCHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHhCCceEEEEEecCCCcc--ccccccccCCCCCCCCcEEEEecC
Q 002657 217 DLRLENIQEIIGGKIGLMNESWKSKSLQEKSLDIFKILGEKKFVLLLDDLWQRV--DLTKVGVPLPSPQSSASKVVFTTR 294 (896)
Q Consensus 217 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~~s~iivTtR 294 (896)
...+.+ .+++.+..... -..+++-++|+|+++... ....+...+. .....+.+|++|.
T Consensus 98 ~~~vd~-ir~l~~~~~~~------------------p~~~~~kVvIIDEad~ls~~a~naLLK~LE-epp~~~~fIL~t~ 157 (527)
T PRK14969 98 NTQVDA-MRELLDNAQYA------------------PTRGRFKVYIIDEVHMLSKSAFNAMLKTLE-EPPEHVKFILATT 157 (527)
T ss_pred cCCHHH-HHHHHHHHhhC------------------cccCCceEEEEcCcccCCHHHHHHHHHHHh-CCCCCEEEEEEeC
Confidence 111111 11111111000 013456689999997442 2444444443 2234555555554
Q ss_pred C-HHHH-hhhccCcceeccCCChHhHHHHHHHHhcCcccCCCCChHHHHHHHHHHhCCCch-HHHHH
Q 002657 295 S-EEIC-GLMEAQKKFKVACLSDKDAWELFCHKVGEETLNNHPDIPELAQTVAKECGGMPL-ALITI 358 (896)
Q Consensus 295 ~-~~v~-~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPl-ai~~~ 358 (896)
+ +.+. ...+....+++++++.++..+.+.+.+...... --++....|++.++|.+- |+..+
T Consensus 158 d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~---~~~~al~~la~~s~Gslr~al~ll 221 (527)
T PRK14969 158 DPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIP---FDATALQLLARAAAGSMRDALSLL 221 (527)
T ss_pred ChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 3 3332 222335689999999999998888776443211 124556889999999775 44443
No 120
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.98 E-value=0.00066 Score=67.77 Aligned_cols=171 Identities=18% Similarity=0.175 Sum_probs=97.4
Q ss_pred ccchHHHHHHHHHHhcc-----CCCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHh
Q 002657 156 VVGLQSQLEQVWRCLVE-----EPAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDLRLENIQEIIGGK 230 (896)
Q Consensus 156 ~vGr~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 230 (896)
|+|.++.++++.=++.. +..--|.++|++|.||||||.-+++.. . ..+ -++.+....-..-+..|+..
T Consensus 28 fiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Em-g--vn~----k~tsGp~leK~gDlaaiLt~ 100 (332)
T COG2255 28 FIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANEL-G--VNL----KITSGPALEKPGDLAAILTN 100 (332)
T ss_pred hcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHh-c--CCe----EecccccccChhhHHHHHhc
Confidence 89999888887666643 467789999999999999999999987 2 222 11111111111112222222
Q ss_pred cCCCCccccccCHHHHHHHHHHHhCCceEEEEEecCCCcc---------ccccccccCCCCCCCC-----------cEEE
Q 002657 231 IGLMNESWKSKSLQEKSLDIFKILGEKKFVLLLDDLWQRV---------DLTKVGVPLPSPQSSA-----------SKVV 290 (896)
Q Consensus 231 l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~---------~~~~l~~~~~~~~~~~-----------s~ii 290 (896)
+. ..=++.+|.+.... ..+++.....-..+.+ +-|=
T Consensus 101 Le------------------------~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIG 156 (332)
T COG2255 101 LE------------------------EGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIG 156 (332)
T ss_pred CC------------------------cCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEee
Confidence 21 11244555553210 0111110000011112 2234
Q ss_pred EecCCHHHHhhhc--cCcceeccCCChHhHHHHHHHHhcCcccCCCCChHHHHHHHHHHhCCCchHHHHHHH
Q 002657 291 FTTRSEEICGLME--AQKKFKVACLSDKDAWELFCHKVGEETLNNHPDIPELAQTVAKECGGMPLALITIGR 360 (896)
Q Consensus 291 vTtR~~~v~~~~~--~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~~~ 360 (896)
-|||.--+..-+. -..+.+++..+.+|-.++..+.+..-..... ++-+.+|+++..|-|--..-+-+
T Consensus 157 ATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~---~~~a~eIA~rSRGTPRIAnRLLr 225 (332)
T COG2255 157 ATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIEID---EEAALEIARRSRGTPRIANRLLR 225 (332)
T ss_pred eccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCCCC---hHHHHHHHHhccCCcHHHHHHHH
Confidence 6888654322222 2346799999999999999998855442222 45689999999999975544443
No 121
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.98 E-value=0.00012 Score=87.22 Aligned_cols=191 Identities=10% Similarity=0.106 Sum_probs=106.6
Q ss_pred ccchHHHHHHHHHHhccCCCe-EEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHh----
Q 002657 156 VVGLQSQLEQVWRCLVEEPAG-IVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDLRLENIQEIIGGK---- 230 (896)
Q Consensus 156 ~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~---- 230 (896)
+||.+..++.|..++..+.+. .+.++|+.|+||||+|+.+++.+... ...... .+... ..-+.|...
T Consensus 17 iiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~-~~~~~~---pCg~C----~sC~~~~~g~~~~ 88 (824)
T PRK07764 17 VIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCV-EGPTST---PCGEC----DSCVALAPGGPGS 88 (824)
T ss_pred hcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcc-cCCCCC---CCccc----HHHHHHHcCCCCC
Confidence 799999999999999887654 47899999999999999998887211 110000 00000 000011000
Q ss_pred ---cCCCCccccccCHHHHHHHHHH-----HhCCceEEEEEecCCCc--cccccccccCCCCCCCCcEEEEec-CCHHHH
Q 002657 231 ---IGLMNESWKSKSLQEKSLDIFK-----ILGEKKFVLLLDDLWQR--VDLTKVGVPLPSPQSSASKVVFTT-RSEEIC 299 (896)
Q Consensus 231 ---l~~~~~~~~~~~~~~~~~~l~~-----~l~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~~s~iivTt-R~~~v~ 299 (896)
+..... .....++... +++ -..+++-++|||+++.. ..+..+...+. .-...+.+|++| ....+.
T Consensus 89 ~dv~eidaa--s~~~Vd~iR~-l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LE-EpP~~~~fIl~tt~~~kLl 164 (824)
T PRK07764 89 LDVTEIDAA--SHGGVDDARE-LRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVE-EPPEHLKFIFATTEPDKVI 164 (824)
T ss_pred CcEEEeccc--ccCCHHHHHH-HHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHh-CCCCCeEEEEEeCChhhhh
Confidence 000000 0011111111 111 12345557899999743 33445544444 333455555544 444443
Q ss_pred h-hhccCcceeccCCChHhHHHHHHHHhcCcccCCCCChHHHHHHHHHHhCCCchHH-HHHHHh
Q 002657 300 G-LMEAQKKFKVACLSDKDAWELFCHKVGEETLNNHPDIPELAQTVAKECGGMPLAL-ITIGRA 361 (896)
Q Consensus 300 ~-~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai-~~~~~~ 361 (896)
. ..+....|++..++.++..+.+.+.+....... -.+....|++.++|.+..+ ..+-.+
T Consensus 165 ~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~i---d~eal~lLa~~sgGdlR~Al~eLEKL 225 (824)
T PRK07764 165 GTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVPV---EPGVLPLVIRAGGGSVRDSLSVLDQL 225 (824)
T ss_pred HHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 2 334467899999999999988888764433111 2445678899999987433 344333
No 122
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.98 E-value=0.00012 Score=83.28 Aligned_cols=194 Identities=13% Similarity=0.150 Sum_probs=108.5
Q ss_pred ccchHHHHHHHHHHhccCC-CeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHhcCCC
Q 002657 156 VVGLQSQLEQVWRCLVEEP-AGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDLRLENIQEIIGGKIGLM 234 (896)
Q Consensus 156 ~vGr~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 234 (896)
++|.+..++.|.+.+..+. ...+.++|+.|+||||+|+.+++.... ....+. ........-+.|.......
T Consensus 18 IiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C-~~~~~~-------~pCg~C~sC~~i~~g~hpD 89 (624)
T PRK14959 18 VAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNC-ETAPTG-------EPCNTCEQCRKVTQGMHVD 89 (624)
T ss_pred hcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccc-cCCCCC-------CCCcccHHHHHHhcCCCCc
Confidence 7999988888888888765 467778999999999999999987621 110000 0001111111111110000
Q ss_pred Cccc---cccCHHHHHHHHHHH-----hCCceEEEEEecCCCc--cccccccccCCCCCCCCcEEEEecCC-HHHH-hhh
Q 002657 235 NESW---KSKSLQEKSLDIFKI-----LGEKKFVLLLDDLWQR--VDLTKVGVPLPSPQSSASKVVFTTRS-EEIC-GLM 302 (896)
Q Consensus 235 ~~~~---~~~~~~~~~~~l~~~-----l~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~~s~iivTtR~-~~v~-~~~ 302 (896)
...+ .....++. ..+.+. ..+++-++|+|++... .....+...+. .......+|++|.. ..+. ...
T Consensus 90 v~eId~a~~~~Id~i-R~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LE-EP~~~~ifILaTt~~~kll~TI~ 167 (624)
T PRK14959 90 VVEIDGASNRGIDDA-KRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLE-EPPARVTFVLATTEPHKFPVTIV 167 (624)
T ss_pred eEEEecccccCHHHH-HHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhh-ccCCCEEEEEecCChhhhhHHHH
Confidence 0000 00111111 112222 2345668999999643 33444544443 22234555555544 4443 222
Q ss_pred ccCcceeccCCChHhHHHHHHHHhcCcccCCCCChHHHHHHHHHHhCCCc-hHHHHHHHhh
Q 002657 303 EAQKKFKVACLSDKDAWELFCHKVGEETLNNHPDIPELAQTVAKECGGMP-LALITIGRAM 362 (896)
Q Consensus 303 ~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~GlP-lai~~~~~~l 362 (896)
.....+++++++.++....+.+.+....... -.+.+..|++.++|.+ .|+..+..++
T Consensus 168 SRcq~i~F~pLs~~eL~~~L~~il~~egi~i---d~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 168 SRCQHFTFTRLSEAGLEAHLTKVLGREGVDY---DPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred hhhhccccCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 3346789999999999998888765433111 2456788999999965 6777666544
No 123
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.96 E-value=0.00019 Score=82.16 Aligned_cols=195 Identities=12% Similarity=0.070 Sum_probs=107.3
Q ss_pred ccchHHHHHHHHHHhccCCCeE-EEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHhcCCC
Q 002657 156 VVGLQSQLEQVWRCLVEEPAGI-VGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDLRLENIQEIIGGKIGLM 234 (896)
Q Consensus 156 ~vGr~~~~~~l~~~L~~~~~~v-i~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 234 (896)
++|.+..++.|..++..+...- +.++|+.|+||||+|+.+++..... ...+ +-.+... ..-+.|...-+..
T Consensus 15 ivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~-~~~~---~~pCg~C----~~C~~i~~~~~~~ 86 (584)
T PRK14952 15 VVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCA-QGPT---ATPCGVC----ESCVALAPNGPGS 86 (584)
T ss_pred hcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccc-cCCC---CCccccc----HHHHHhhcccCCC
Confidence 8999999999999998876554 6799999999999999999876211 1000 0000000 0111111000000
Q ss_pred C-----ccccccCHHH---HHHHHHHH-hCCceEEEEEecCCCc--cccccccccCCCCCCCCcEEE-EecCCHHHH-hh
Q 002657 235 N-----ESWKSKSLQE---KSLDIFKI-LGEKKFVLLLDDLWQR--VDLTKVGVPLPSPQSSASKVV-FTTRSEEIC-GL 301 (896)
Q Consensus 235 ~-----~~~~~~~~~~---~~~~l~~~-l~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~~s~ii-vTtR~~~v~-~~ 301 (896)
. +.......++ +...+... ..+++-++|+|++... .....+...+. .......+| +||....+. ..
T Consensus 87 ~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LE-Epp~~~~fIL~tte~~kll~TI 165 (584)
T PRK14952 87 IDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVE-EPPEHLIFIFATTEPEKVLPTI 165 (584)
T ss_pred ceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHh-cCCCCeEEEEEeCChHhhHHHH
Confidence 0 0000011111 11111111 1245558899999643 33444444443 223345555 455444443 22
Q ss_pred hccCcceeccCCChHhHHHHHHHHhcCcccCCCCChHHHHHHHHHHhCCCch-HHHHHHHhh
Q 002657 302 MEAQKKFKVACLSDKDAWELFCHKVGEETLNNHPDIPELAQTVAKECGGMPL-ALITIGRAM 362 (896)
Q Consensus 302 ~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPl-ai~~~~~~l 362 (896)
.+....+++.+++.++..+.+.+.+......- -.+....|++.++|.+- |+..+-.++
T Consensus 166 ~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i---~~~al~~Ia~~s~GdlR~aln~Ldql~ 224 (584)
T PRK14952 166 RSRTHHYPFRLLPPRTMRALIARICEQEGVVV---DDAVYPLVIRAGGGSPRDTLSVLDQLL 224 (584)
T ss_pred HHhceEEEeeCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 33467899999999999988888765443111 14556888999999774 445554443
No 124
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.96 E-value=5e-07 Score=99.65 Aligned_cols=125 Identities=27% Similarity=0.334 Sum_probs=81.7
Q ss_pred CcccceEEEeeccccccccc-CCCCCCccEEecccccccccchhhhccCCCCcEEEccCCccccccccc-ccCCCCCCEE
Q 002657 512 GWENVSRLSLMQNRIKNLSE-IPKCPHLLTLFLNSNELKIITNDFFQFMPSLKVLSLSRNRRLTNLQLG-ISKLVSLQHL 589 (896)
Q Consensus 512 ~~~~lr~L~l~~~~~~~l~~-~~~~~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~Ls~~~~i~~lp~~-i~~L~~L~~L 589 (896)
.|..+...++++|.+..+.. +.-++.|+.|+|+.|.+++.. ++..|+.|+.|||++| .+..+|.- ...+. |+.|
T Consensus 162 ~Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc~-L~~L 237 (1096)
T KOG1859|consen 162 VWNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYN-CLRHVPQLSMVGCK-LQLL 237 (1096)
T ss_pred hhhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccc-hhccccccchhhhh-heee
Confidence 35567777777777655422 455677777777777776665 3677777777777777 67766631 12233 7777
Q ss_pred eccCCCccccchhhhcCCCCCEeeccccccccC---CcHHHHhccccccEEEeeccCC
Q 002657 590 DLSLTNIEKLSGELKALVNLKCLNLEYTWSLVT---IPQQLIASFLRLHVLRMFGVGD 644 (896)
Q Consensus 590 ~Ls~~~i~~lp~~l~~L~~L~~L~L~~~~~l~~---lp~~~i~~l~~L~~L~l~~~~~ 644 (896)
.|++|.++.|- ++.+|.+|+.||+++| .+.. +.+ ++.|..|+.|.+.+|..
T Consensus 238 ~lrnN~l~tL~-gie~LksL~~LDlsyN-ll~~hseL~p--LwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 238 NLRNNALTTLR-GIENLKSLYGLDLSYN-LLSEHSELEP--LWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred eecccHHHhhh-hHHhhhhhhccchhHh-hhhcchhhhH--HHHHHHHHHHhhcCCcc
Confidence 77777777665 5777777777777777 3332 222 56667777777776643
No 125
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.93 E-value=0.00011 Score=88.78 Aligned_cols=177 Identities=12% Similarity=0.116 Sum_probs=99.3
Q ss_pred ccchHHHHHHHHHHhccCCCeEEEEEcCCCchHHHHHHHHHhhhccCCC----CCCeEEE-EEeCCccCHHHHHHHHHHh
Q 002657 156 VVGLQSQLEQVWRCLVEEPAGIVGLYGMGGVGKTTLLTHINNKFLQVPN----DFDCVIW-VVVSKDLRLENIQEIIGGK 230 (896)
Q Consensus 156 ~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----~f~~~~w-v~~~~~~~~~~~~~~i~~~ 230 (896)
++||+.++.++++.|......-+.++|++|+||||+|+.+++.... .. -....+| +.++. + ..
T Consensus 189 ~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~-~~v~~~l~~~~i~~l~l~~------l----~a- 256 (852)
T TIGR03345 189 VLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAA-GDVPPALRNVRLLSLDLGL------L----QA- 256 (852)
T ss_pred ccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhh-CCCCccccCCeEEEeehhh------h----hc-
Confidence 8999999999999998876667779999999999999999987621 11 1122232 22211 0 00
Q ss_pred cCCCCccccccCHHHHHHHHHHHh--CCceEEEEEecCCCcc-------ccc--cccccCCCCCCCCcEEEEecCCHHHH
Q 002657 231 IGLMNESWKSKSLQEKSLDIFKIL--GEKKFVLLLDDLWQRV-------DLT--KVGVPLPSPQSSASKVVFTTRSEEIC 299 (896)
Q Consensus 231 l~~~~~~~~~~~~~~~~~~l~~~l--~~kr~LlVlDdv~~~~-------~~~--~l~~~~~~~~~~~s~iivTtR~~~v~ 299 (896)
+.. .....+.....+.+.+ .+++.+|++|++.... ..+ .+..+.. ....-++|-||...+..
T Consensus 257 ----g~~-~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l--~~G~l~~IgaTT~~e~~ 329 (852)
T TIGR03345 257 ----GAS-VKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPAL--ARGELRTIAATTWAEYK 329 (852)
T ss_pred ----ccc-cchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHh--hCCCeEEEEecCHHHHh
Confidence 000 1112222333333323 2478999999995421 111 1222221 22345677777754332
Q ss_pred h-------hhccCcceeccCCChHhHHHHHHHHhcCccc-CCCCChHHHHHHHHHHhCCC
Q 002657 300 G-------LMEAQKKFKVACLSDKDAWELFCHKVGEETL-NNHPDIPELAQTVAKECGGM 351 (896)
Q Consensus 300 ~-------~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~-~~~~~~~~~~~~i~~~~~Gl 351 (896)
. .......+.+++++.+++.+++......-.. ..-.-..+....+++.+.+.
T Consensus 330 ~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ry 389 (852)
T TIGR03345 330 KYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRY 389 (852)
T ss_pred hhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccc
Confidence 1 1223468999999999999997554422110 00011234455666666543
No 126
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.92 E-value=0.0002 Score=82.90 Aligned_cols=186 Identities=12% Similarity=0.105 Sum_probs=103.7
Q ss_pred ccchHHHHHHHHHHhccCCCe-EEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHhcCCC
Q 002657 156 VVGLQSQLEQVWRCLVEEPAG-IVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDLRLENIQEIIGGKIGLM 234 (896)
Q Consensus 156 ~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 234 (896)
++|.+..++.|..++..++.. .+.++|+.|+||||+|+.+++.......... +-.+.. .... .+..
T Consensus 20 IiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~---~~pC~~-------C~~~---~~~~ 86 (725)
T PRK07133 20 IVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDL---LEPCQE-------CIEN---VNNS 86 (725)
T ss_pred hcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCC---CCchhH-------HHHh---hcCC
Confidence 799999999999999886544 5678999999999999999887521000000 000000 0000 0000
Q ss_pred Cc-----cccccCHHHHHHHHHHHh-----CCceEEEEEecCCCc--cccccccccCCCCCCCCcE-EEEecCCHHHH-h
Q 002657 235 NE-----SWKSKSLQEKSLDIFKIL-----GEKKFVLLLDDLWQR--VDLTKVGVPLPSPQSSASK-VVFTTRSEEIC-G 300 (896)
Q Consensus 235 ~~-----~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~~s~-iivTtR~~~v~-~ 300 (896)
.+ .......++ +..+.+.+ .+++-++|+|++... ..+..+...+- ....... |++|++...+. .
T Consensus 87 ~Dvieidaasn~~vd~-IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLE-EPP~~tifILaTte~~KLl~T 164 (725)
T PRK07133 87 LDIIEMDAASNNGVDE-IRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLE-EPPKHVIFILATTEVHKIPLT 164 (725)
T ss_pred CcEEEEeccccCCHHH-HHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhh-cCCCceEEEEEcCChhhhhHH
Confidence 00 000011111 11222222 245668899999643 33444444443 2223444 44555544443 2
Q ss_pred hhccCcceeccCCChHhHHHHHHHHhcCcccCCCCChHHHHHHHHHHhCCCch-HHHHHH
Q 002657 301 LMEAQKKFKVACLSDKDAWELFCHKVGEETLNNHPDIPELAQTVAKECGGMPL-ALITIG 359 (896)
Q Consensus 301 ~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPl-ai~~~~ 359 (896)
.......+++.+++.++..+.+...+....... -.+.+..+++.++|.+- |+..+-
T Consensus 165 I~SRcq~ieF~~L~~eeI~~~L~~il~kegI~i---d~eAl~~LA~lS~GslR~AlslLe 221 (725)
T PRK07133 165 ILSRVQRFNFRRISEDEIVSRLEFILEKENISY---EKNALKLIAKLSSGSLRDALSIAE 221 (725)
T ss_pred HHhhceeEEccCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 234456899999999999988887664432111 14557889999998764 444333
No 127
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.92 E-value=0.00011 Score=76.53 Aligned_cols=154 Identities=16% Similarity=0.163 Sum_probs=79.0
Q ss_pred ccchHHHHHHHHHH---hcc------------CCCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCH
Q 002657 156 VVGLQSQLEQVWRC---LVE------------EPAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDLRL 220 (896)
Q Consensus 156 ~vGr~~~~~~l~~~---L~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~ 220 (896)
++|.+..+++|.+. ..- +....+.++|++|+||||+|+.+++..... ..-....++.++..
T Consensus 8 ~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~-~~~~~~~~v~~~~~--- 83 (261)
T TIGR02881 8 MVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEM-NVLSKGHLIEVERA--- 83 (261)
T ss_pred hcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhc-CcccCCceEEecHH---
Confidence 78887776665433 211 134567899999999999999998865211 11111123333221
Q ss_pred HHHHHHHHHhcCCCCccccccCHHHHHHHHHHHhCCceEEEEEecCCCcc----------ccccccccCCCCCCCCcEEE
Q 002657 221 ENIQEIIGGKIGLMNESWKSKSLQEKSLDIFKILGEKKFVLLLDDLWQRV----------DLTKVGVPLPSPQSSASKVV 290 (896)
Q Consensus 221 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~----------~~~~l~~~~~~~~~~~s~ii 290 (896)
++... ..+ ....... .+.+... .-+|++|++.... ..+.+...+. .......+|
T Consensus 84 -~l~~~---~~g--------~~~~~~~-~~~~~a~--~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e-~~~~~~~vi 147 (261)
T TIGR02881 84 -DLVGE---YIG--------HTAQKTR-EVIKKAL--GGVLFIDEAYSLARGGEKDFGKEAIDTLVKGME-DNRNEFVLI 147 (261)
T ss_pred -Hhhhh---hcc--------chHHHHH-HHHHhcc--CCEEEEechhhhccCCccchHHHHHHHHHHHHh-ccCCCEEEE
Confidence 11111 000 1111111 2222222 2488999996421 1222333332 223334555
Q ss_pred EecCCHHHHh-------hhcc-CcceeccCCChHhHHHHHHHHhcCc
Q 002657 291 FTTRSEEICG-------LMEA-QKKFKVACLSDKDAWELFCHKVGEE 329 (896)
Q Consensus 291 vTtR~~~v~~-------~~~~-~~~~~l~~L~~~e~~~Lf~~~~~~~ 329 (896)
+++...+... .... ...+++++++.++-.+++.+.+...
T Consensus 148 la~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~~ 194 (261)
T TIGR02881 148 LAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKER 194 (261)
T ss_pred ecCCcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHHc
Confidence 6654432211 1111 2457899999999999998877543
No 128
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.90 E-value=0.00015 Score=76.10 Aligned_cols=132 Identities=13% Similarity=0.113 Sum_probs=71.6
Q ss_pred EEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHhCC
Q 002657 177 IVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDLRLENIQEIIGGKIGLMNESWKSKSLQEKSLDIFKILGE 256 (896)
Q Consensus 177 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~ 256 (896)
-+.++|++|+||||+|+.+++.... .+......|+.++. .++ ...+.. .........+.+ .
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~-~g~~~~~~~v~v~~----~~l----~~~~~g-------~~~~~~~~~~~~-a-- 120 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHR-LGYVRKGHLVSVTR----DDL----VGQYIG-------HTAPKTKEILKR-A-- 120 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHH-cCCcccceEEEecH----HHH----hHhhcc-------cchHHHHHHHHH-c--
Confidence 5789999999999999888776521 12222123444442 122 111111 111111222222 2
Q ss_pred ceEEEEEecCCCc-----------cccccccccCCCCCCCCcEEEEecCCHHHHhhhc--------cCcceeccCCChHh
Q 002657 257 KKFVLLLDDLWQR-----------VDLTKVGVPLPSPQSSASKVVFTTRSEEICGLME--------AQKKFKVACLSDKD 317 (896)
Q Consensus 257 kr~LlVlDdv~~~-----------~~~~~l~~~~~~~~~~~s~iivTtR~~~v~~~~~--------~~~~~~l~~L~~~e 317 (896)
..-+|+||++... ..+..+...+. ....+.+||+++.......... ....+++++++.+|
T Consensus 121 ~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le-~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~ed 199 (284)
T TIGR02880 121 MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVME-NQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAE 199 (284)
T ss_pred cCcEEEEechhhhccCCCccchHHHHHHHHHHHHh-cCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHH
Confidence 2358899999522 11223333333 3344567777765443322111 13568999999999
Q ss_pred HHHHHHHHhcC
Q 002657 318 AWELFCHKVGE 328 (896)
Q Consensus 318 ~~~Lf~~~~~~ 328 (896)
-.+++...+..
T Consensus 200 l~~I~~~~l~~ 210 (284)
T TIGR02880 200 LLVIAGLMLKE 210 (284)
T ss_pred HHHHHHHHHHH
Confidence 99998887754
No 129
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.89 E-value=0.00036 Score=78.62 Aligned_cols=175 Identities=13% Similarity=0.145 Sum_probs=102.5
Q ss_pred ccchHHHHHHHHHHhccCCCe-EEEEEcCCCchHHHHHHHHHhhhccCCC------------------CCCeEEEEEeCC
Q 002657 156 VVGLQSQLEQVWRCLVEEPAG-IVGLYGMGGVGKTTLLTHINNKFLQVPN------------------DFDCVIWVVVSK 216 (896)
Q Consensus 156 ~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~------------------~f~~~~wv~~~~ 216 (896)
++|.+..++.+.+++..+... .+.++|+.|+||||+|+.++........ .|....++..+.
T Consensus 18 iiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~eidaas 97 (486)
T PRK14953 18 VIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIEIDAAS 97 (486)
T ss_pred ccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEEEeCcc
Confidence 789999999999999876554 4668999999999999999887521000 011111121111
Q ss_pred ccCHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHh-----CCceEEEEEecCCCc--cccccccccCCCCCCCCcEE
Q 002657 217 DLRLENIQEIIGGKIGLMNESWKSKSLQEKSLDIFKIL-----GEKKFVLLLDDLWQR--VDLTKVGVPLPSPQSSASKV 289 (896)
Q Consensus 217 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~~s~i 289 (896)
. ...++ ...+.+.. .+++-++|+|+++.. .....+...+. .......+
T Consensus 98 ~-----------------------~gvd~-ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LE-epp~~~v~ 152 (486)
T PRK14953 98 N-----------------------RGIDD-IRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLE-EPPPRTIF 152 (486)
T ss_pred C-----------------------CCHHH-HHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHh-cCCCCeEE
Confidence 1 11111 11122222 245669999999643 23344443443 22334444
Q ss_pred EE-ecCCHHHHh-hhccCcceeccCCChHhHHHHHHHHhcCcccCCCCChHHHHHHHHHHhCCCchHHHHH
Q 002657 290 VF-TTRSEEICG-LMEAQKKFKVACLSDKDAWELFCHKVGEETLNNHPDIPELAQTVAKECGGMPLALITI 358 (896)
Q Consensus 290 iv-TtR~~~v~~-~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~ 358 (896)
|+ ||+...+.. .......+++.+++.++....+.+.+....... -.+.+..+++.++|.+..+...
T Consensus 153 Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~i---d~~al~~La~~s~G~lr~al~~ 220 (486)
T PRK14953 153 ILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIEY---EEKALDLLAQASEGGMRDAASL 220 (486)
T ss_pred EEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHH
Confidence 44 444433322 223346789999999999988888765433211 2455778888999876554433
No 130
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.89 E-value=8.4e-05 Score=83.10 Aligned_cols=182 Identities=17% Similarity=0.110 Sum_probs=105.7
Q ss_pred CeEEEEEcCCCchHHHHHHHHHhhhccCCCCCC-eEEEEEeCCccCHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHH
Q 002657 175 AGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFD-CVIWVVVSKDLRLENIQEIIGGKIGLMNESWKSKSLQEKSLDIFKI 253 (896)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 253 (896)
..-+.|+|.+|+|||+|++.+++... +.+.. .+.|++. .++..++...+... .. ..+.+.
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~--~~~~~~~v~yi~~------~~f~~~~~~~~~~~-------~~----~~f~~~ 190 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVV--QNEPDLRVMYITS------EKFLNDLVDSMKEG-------KL----NEFREK 190 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHH--HhCCCCeEEEEEH------HHHHHHHHHHHhcc-------cH----HHHHHH
Confidence 45699999999999999999999862 22233 4566643 34555565554321 11 223333
Q ss_pred hCCceEEEEEecCCCcc---cc-ccccccCCCCCCCCcEEEEecC-CHHH--------HhhhccCcceeccCCChHhHHH
Q 002657 254 LGEKKFVLLLDDLWQRV---DL-TKVGVPLPSPQSSASKVVFTTR-SEEI--------CGLMEAQKKFKVACLSDKDAWE 320 (896)
Q Consensus 254 l~~kr~LlVlDdv~~~~---~~-~~l~~~~~~~~~~~s~iivTtR-~~~v--------~~~~~~~~~~~l~~L~~~e~~~ 320 (896)
++.+.-+|++||+.... .+ +.+...+......|..||+||. .+.- .+.+.....+++++.+.+.-.+
T Consensus 191 ~~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~ 270 (440)
T PRK14088 191 YRKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKK 270 (440)
T ss_pred HHhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHH
Confidence 33445689999996421 11 1222222111123457888875 3321 2223445678999999999999
Q ss_pred HHHHHhcCcccCCCCChHHHHHHHHHHhCCCchHHHHHHHh------hcC-CCCHHHHHHHHHHH
Q 002657 321 LFCHKVGEETLNNHPDIPELAQTVAKECGGMPLALITIGRA------MSC-KRTPQEWRHAIQVL 378 (896)
Q Consensus 321 Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~~~~------l~~-~~~~~~w~~~l~~l 378 (896)
++.+.+......- -+++...|++.+.|..-.+.-+-.. +.+ .-+....+.++..+
T Consensus 271 IL~~~~~~~~~~l---~~ev~~~Ia~~~~~~~R~L~g~l~~l~~~~~~~~~~it~~~a~~~L~~~ 332 (440)
T PRK14088 271 IARKMLEIEHGEL---PEEVLNFVAENVDDNLRRLRGAIIKLLVYKETTGEEVDLKEAILLLKDF 332 (440)
T ss_pred HHHHHHHhcCCCC---CHHHHHHHHhccccCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 9999876433222 2567888888888765544322211 111 23555666665544
No 131
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.89 E-value=0.00041 Score=73.98 Aligned_cols=201 Identities=16% Similarity=0.202 Sum_probs=119.2
Q ss_pred ccchHHHHHHHHHHhcc----CCCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHhc
Q 002657 156 VVGLQSQLEQVWRCLVE----EPAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDLRLENIQEIIGGKI 231 (896)
Q Consensus 156 ~vGr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 231 (896)
.+||+.++..+-+|+.. ...+.+.|.|.+|.|||.+...++.+...-... .+++++.+..-.....++..|...+
T Consensus 152 l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~-~~~v~inc~sl~~~~aiF~kI~~~~ 230 (529)
T KOG2227|consen 152 LKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKS-PVTVYINCTSLTEASAIFKKIFSSL 230 (529)
T ss_pred ccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhccc-ceeEEEeeccccchHHHHHHHHHHH
Confidence 79999999999999865 467889999999999999999999987211111 2456666655456677777777766
Q ss_pred --CCCCccccccCHHHHHHHHHHHhCCc--eEEEEEecCCCc--cccccccccCCCCCCCCcEEEEecCCHHH------H
Q 002657 232 --GLMNESWKSKSLQEKSLDIFKILGEK--KFVLLLDDLWQR--VDLTKVGVPLPSPQSSASKVVFTTRSEEI------C 299 (896)
Q Consensus 232 --~~~~~~~~~~~~~~~~~~l~~~l~~k--r~LlVlDdv~~~--~~~~~l~~~~~~~~~~~s~iivTtR~~~v------~ 299 (896)
.... .....+....+.++..+. .+|+|+|..+.. ..-..+...|....-.++++|+.--...+ .
T Consensus 231 ~q~~~s----~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR~L 306 (529)
T KOG2227|consen 231 LQDLVS----PGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDRFL 306 (529)
T ss_pred HHHhcC----CchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHHHh
Confidence 2111 122255666666666543 689999998642 12222222222123345666544332211 1
Q ss_pred hhhc-----cCcceeccCCChHhHHHHHHHHhcCcccCC--CCChHHHHHHHHHHhCCCchHHHHHHHh
Q 002657 300 GLME-----AQKKFKVACLSDKDAWELFCHKVGEETLNN--HPDIPELAQTVAKECGGMPLALITIGRA 361 (896)
Q Consensus 300 ~~~~-----~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~--~~~~~~~~~~i~~~~~GlPlai~~~~~~ 361 (896)
..+. ....+...|.+.++-.++|..+........ +..++-.|++++.-.|.+--|+-+.-++
T Consensus 307 prL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R~a 375 (529)
T KOG2227|consen 307 PRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCRRA 375 (529)
T ss_pred hhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 1111 234677899999999999999876543111 1122333344444444455555444433
No 132
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.89 E-value=0.00025 Score=81.75 Aligned_cols=198 Identities=13% Similarity=0.086 Sum_probs=106.1
Q ss_pred ccchHHHHHHHHHHhccCCCe-EEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEE-eCCccCHHHHHHHHHHhcCC
Q 002657 156 VVGLQSQLEQVWRCLVEEPAG-IVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVV-VSKDLRLENIQEIIGGKIGL 233 (896)
Q Consensus 156 ~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~-~~~~~~~~~~~~~i~~~l~~ 233 (896)
++|.+..++.|.+++..+... .+.++|+.|+||||+|+.+++... -....+...|.. +.........-+.+...-..
T Consensus 18 ivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~-c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~g~~~ 96 (620)
T PRK14954 18 ITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVN-CQRMIDDPVYLQEVTEPCGECESCRDFDAGTSL 96 (620)
T ss_pred hcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhC-CCCcCCccccccccCCCCccCHHHHHHhccCCC
Confidence 899999999999988877654 478999999999999999988762 111111001110 00000111111111110000
Q ss_pred CCccc---cccCHHHHHHHHHHH----hCCceEEEEEecCCCc--cccccccccCCCCCCCCcEEE-EecCCHHHH-hhh
Q 002657 234 MNESW---KSKSLQEKSLDIFKI----LGEKKFVLLLDDLWQR--VDLTKVGVPLPSPQSSASKVV-FTTRSEEIC-GLM 302 (896)
Q Consensus 234 ~~~~~---~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~~s~ii-vTtR~~~v~-~~~ 302 (896)
....+ .....++....+... ..+++-++|+|+++.. .....+...+. .-...+.+| +|++...+. ...
T Consensus 97 n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LE-ePp~~tv~IL~t~~~~kLl~TI~ 175 (620)
T PRK14954 97 NISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLE-EPPPHAIFIFATTELHKIPATIA 175 (620)
T ss_pred CeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHh-CCCCCeEEEEEeCChhhhhHHHH
Confidence 00000 011122222211111 1234557899999643 23444544443 222345544 454444443 233
Q ss_pred ccCcceeccCCChHhHHHHHHHHhcCcccCCCCChHHHHHHHHHHhCCCch-HHHHH
Q 002657 303 EAQKKFKVACLSDKDAWELFCHKVGEETLNNHPDIPELAQTVAKECGGMPL-ALITI 358 (896)
Q Consensus 303 ~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPl-ai~~~ 358 (896)
.....+++.+++.++....+.+.+......- -.+.+..+++.++|..- |+..+
T Consensus 176 SRc~~vef~~l~~~ei~~~L~~i~~~egi~I---~~eal~~La~~s~Gdlr~al~eL 229 (620)
T PRK14954 176 SRCQRFNFKRIPLDEIQSQLQMICRAEGIQI---DADALQLIARKAQGSMRDAQSIL 229 (620)
T ss_pred hhceEEecCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHhCCCHHHHHHHH
Confidence 4467899999999999888887664332111 25668889999999554 44443
No 133
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.87 E-value=2e-05 Score=74.27 Aligned_cols=102 Identities=28% Similarity=0.447 Sum_probs=71.2
Q ss_pred cceEEEeecccccccccCCCCCCccEEecccccccccchhhhccCCCCcEEEccCCccccccc--ccccCCCCCCEEecc
Q 002657 515 NVSRLSLMQNRIKNLSEIPKCPHLLTLFLNSNELKIITNDFFQFMPSLKVLSLSRNRRLTNLQ--LGISKLVSLQHLDLS 592 (896)
Q Consensus 515 ~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~Ls~~~~i~~lp--~~i~~L~~L~~L~Ls 592 (896)
....+++++|++..+..++.++.|.+|.+.+|.|+.|.+..-.-+++|.+|.|.+| ++.++- ..+..++.|++|.+-
T Consensus 43 ~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN-si~~l~dl~pLa~~p~L~~Ltll 121 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN-SIQELGDLDPLASCPKLEYLTLL 121 (233)
T ss_pred ccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCc-chhhhhhcchhccCCccceeeec
Confidence 45567788888777777888888888888888888887776666777888888888 666553 235566777777777
Q ss_pred CCCccccch----hhhcCCCCCEeecccc
Q 002657 593 LTNIEKLSG----ELKALVNLKCLNLEYT 617 (896)
Q Consensus 593 ~~~i~~lp~----~l~~L~~L~~L~L~~~ 617 (896)
+|.++..+. -+.++++|++||..+-
T Consensus 122 ~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 122 GNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred CCchhcccCceeEEEEecCcceEeehhhh
Confidence 776654432 2456666666666543
No 134
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.86 E-value=0.00032 Score=78.61 Aligned_cols=179 Identities=14% Similarity=0.165 Sum_probs=103.6
Q ss_pred ccchHHHHHHHHHHhccCCC-eEEEEEcCCCchHHHHHHHHHhhhccCC--------------------CCCCeEEEEEe
Q 002657 156 VVGLQSQLEQVWRCLVEEPA-GIVGLYGMGGVGKTTLLTHINNKFLQVP--------------------NDFDCVIWVVV 214 (896)
Q Consensus 156 ~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~--------------------~~f~~~~wv~~ 214 (896)
++|.+..++.+.+++..+.. ..+.++|+.|+||||+|+.+++...... .+++ .+++..
T Consensus 19 iiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d-~~~i~g 97 (451)
T PRK06305 19 ILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD-VLEIDG 97 (451)
T ss_pred hcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc-eEEeec
Confidence 89999999999999987765 5678899999999999999988762110 0111 111110
Q ss_pred CCccCHHHHHHHHHHhcCCCCccccccCHHHHHHHHHH-HhCCceEEEEEecCCCc--cccccccccCCCCCCCCcEEEE
Q 002657 215 SKDLRLENIQEIIGGKIGLMNESWKSKSLQEKSLDIFK-ILGEKKFVLLLDDLWQR--VDLTKVGVPLPSPQSSASKVVF 291 (896)
Q Consensus 215 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~~s~iiv 291 (896)
.......+ ..+....+.. -..+++-++|+|++... .....+...+. ....+..+|+
T Consensus 98 ~~~~gid~--------------------ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lE-ep~~~~~~Il 156 (451)
T PRK06305 98 ASHRGIED--------------------IRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLE-EPPQHVKFFL 156 (451)
T ss_pred cccCCHHH--------------------HHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhh-cCCCCceEEE
Confidence 00001111 1111111110 01245668899998533 23344444443 2233555666
Q ss_pred ecCC-HHHHh-hhccCcceeccCCChHhHHHHHHHHhcCcccCCCCChHHHHHHHHHHhCCCch-HHHHHH
Q 002657 292 TTRS-EEICG-LMEAQKKFKVACLSDKDAWELFCHKVGEETLNNHPDIPELAQTVAKECGGMPL-ALITIG 359 (896)
Q Consensus 292 TtR~-~~v~~-~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPl-ai~~~~ 359 (896)
+|.. ..+.. .......+++.++++++....+.+.+....... -.+.+..|++.++|.+- |+..+-
T Consensus 157 ~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~i---~~~al~~L~~~s~gdlr~a~~~Le 224 (451)
T PRK06305 157 ATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIET---SREALLPIARAAQGSLRDAESLYD 224 (451)
T ss_pred EeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 5543 33322 223456789999999999988887764432111 24567889999999664 444433
No 135
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.85 E-value=0.00012 Score=80.75 Aligned_cols=169 Identities=18% Similarity=0.284 Sum_probs=96.5
Q ss_pred ccchHHHHHHHHHHhcc-------------CCCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHH
Q 002657 156 VVGLQSQLEQVWRCLVE-------------EPAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDLRLEN 222 (896)
Q Consensus 156 ~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~ 222 (896)
+.|++..++++.+.+.. ...+-|.++|++|+|||++|+.+++.. ... |+.++. ..
T Consensus 133 i~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~---~~~-----~i~v~~----~~ 200 (389)
T PRK03992 133 IGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET---NAT-----FIRVVG----SE 200 (389)
T ss_pred hCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHh---CCC-----EEEeeh----HH
Confidence 68999999998887632 235668899999999999999999876 222 233221 11
Q ss_pred HHHHHHHhcCCCCccccccCHHHHHHHHHHHh-CCceEEEEEecCCCcc----------c---ccccccc---CCC-CCC
Q 002657 223 IQEIIGGKIGLMNESWKSKSLQEKSLDIFKIL-GEKKFVLLLDDLWQRV----------D---LTKVGVP---LPS-PQS 284 (896)
Q Consensus 223 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~~----------~---~~~l~~~---~~~-~~~ 284 (896)
+.... .+ .. ......+.+.. ...+.+|+|||++... + ...+... +.. ...
T Consensus 201 l~~~~---~g--------~~-~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~ 268 (389)
T PRK03992 201 LVQKF---IG--------EG-ARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPR 268 (389)
T ss_pred HhHhh---cc--------ch-HHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCC
Confidence 11110 01 11 11222222222 3567899999996421 0 0111111 110 122
Q ss_pred CCcEEEEecCCHHHHh--hh---ccCcceeccCCChHhHHHHHHHHhcCcccCCCCChHHHHHHHHHHhCCCc
Q 002657 285 SASKVVFTTRSEEICG--LM---EAQKKFKVACLSDKDAWELFCHKVGEETLNNHPDIPELAQTVAKECGGMP 352 (896)
Q Consensus 285 ~~s~iivTtR~~~v~~--~~---~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~GlP 352 (896)
.+..||.||...+... .. .-+..+.+.+.+.++-.++|+.++.........+ ...+++.+.|.-
T Consensus 269 ~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~----~~~la~~t~g~s 337 (389)
T PRK03992 269 GNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVD----LEELAELTEGAS 337 (389)
T ss_pred CCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCC----HHHHHHHcCCCC
Confidence 3567787877654311 11 1245789999999999999998876543222223 355666776643
No 136
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.85 E-value=0.00026 Score=82.08 Aligned_cols=176 Identities=14% Similarity=0.144 Sum_probs=105.7
Q ss_pred ccchHHHHHHHHHHhccCCCe-EEEEEcCCCchHHHHHHHHHhhhcc--------------------CCCCCCeEEEEEe
Q 002657 156 VVGLQSQLEQVWRCLVEEPAG-IVGLYGMGGVGKTTLLTHINNKFLQ--------------------VPNDFDCVIWVVV 214 (896)
Q Consensus 156 ~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~--------------------~~~~f~~~~wv~~ 214 (896)
++|.+..++.|..++..+... .+.++|+.|+||||+|+.+++.... ...+|+. ..+..
T Consensus 19 viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~-~~ld~ 97 (614)
T PRK14971 19 VVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNI-HELDA 97 (614)
T ss_pred hcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCce-EEecc
Confidence 899999999999999887665 4789999999999999998886520 0112332 12222
Q ss_pred CCccCHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHhCCceEEEEEecCCCc--cccccccccCCCCCCCCcEEEE-
Q 002657 215 SKDLRLENIQEIIGGKIGLMNESWKSKSLQEKSLDIFKILGEKKFVLLLDDLWQR--VDLTKVGVPLPSPQSSASKVVF- 291 (896)
Q Consensus 215 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~~s~iiv- 291 (896)
+......++. .+++++.... ..+++=++|+|++... ..+..+...+. .-..++.+|+
T Consensus 98 ~~~~~vd~Ir-~li~~~~~~P------------------~~~~~KVvIIdea~~Ls~~a~naLLK~LE-epp~~tifIL~ 157 (614)
T PRK14971 98 ASNNSVDDIR-NLIEQVRIPP------------------QIGKYKIYIIDEVHMLSQAAFNAFLKTLE-EPPSYAIFILA 157 (614)
T ss_pred cccCCHHHHH-HHHHHHhhCc------------------ccCCcEEEEEECcccCCHHHHHHHHHHHh-CCCCCeEEEEE
Confidence 2111121211 1112111100 1134457899998643 33555554443 2234455554
Q ss_pred ecCCHHHHh-hhccCcceeccCCChHhHHHHHHHHhcCcccCCCCChHHHHHHHHHHhCCCchHH
Q 002657 292 TTRSEEICG-LMEAQKKFKVACLSDKDAWELFCHKVGEETLNNHPDIPELAQTVAKECGGMPLAL 355 (896)
Q Consensus 292 TtR~~~v~~-~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai 355 (896)
||+...+.. .......+++.+++.++....+.+.+....... -.+.+..|++.++|..--+
T Consensus 158 tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~i---~~~al~~La~~s~gdlr~a 219 (614)
T PRK14971 158 TTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGITA---EPEALNVIAQKADGGMRDA 219 (614)
T ss_pred eCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHH
Confidence 545444432 234456899999999999999988775443221 1356788999999966543
No 137
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.84 E-value=0.00046 Score=80.35 Aligned_cols=190 Identities=13% Similarity=0.128 Sum_probs=107.4
Q ss_pred ccchHHHHHHHHHHhccCCC-eEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHhcCCC
Q 002657 156 VVGLQSQLEQVWRCLVEEPA-GIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDLRLENIQEIIGGKIGLM 234 (896)
Q Consensus 156 ~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 234 (896)
++|.+..++.|..++..+.. ..+.++|+.|+||||+|+.+++... ...... ...........+.|.......
T Consensus 18 iiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~-c~~~~~------~~~~c~~c~~c~~i~~~~~~d 90 (585)
T PRK14950 18 LVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVN-CTTNDP------KGRPCGTCEMCRAIAEGSAVD 90 (585)
T ss_pred hcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhc-CCCCCC------CCCCCccCHHHHHHhcCCCCe
Confidence 89999999999998887654 4567999999999999999998762 111000 000111122223332221110
Q ss_pred Cccc---cccCHHHHHHHHHHHh-----CCceEEEEEecCCCc--cccccccccCCCCCCCCcEEEEecCC-HHHHh-hh
Q 002657 235 NESW---KSKSLQEKSLDIFKIL-----GEKKFVLLLDDLWQR--VDLTKVGVPLPSPQSSASKVVFTTRS-EEICG-LM 302 (896)
Q Consensus 235 ~~~~---~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~~s~iivTtR~-~~v~~-~~ 302 (896)
.-.. .....++. ..+.+.+ .+++-++|+|++... ...+.+...+. .....+.+|++|.+ ..+.. ..
T Consensus 91 ~~~i~~~~~~~vd~i-r~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LE-epp~~tv~Il~t~~~~kll~tI~ 168 (585)
T PRK14950 91 VIEMDAASHTSVDDA-REIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLE-EPPPHAIFILATTEVHKVPATIL 168 (585)
T ss_pred EEEEeccccCCHHHH-HHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHh-cCCCCeEEEEEeCChhhhhHHHH
Confidence 0000 01111211 1222222 245668999999643 33444544443 22345556555543 33322 22
Q ss_pred ccCcceeccCCChHhHHHHHHHHhcCcccCCCCChHHHHHHHHHHhCCCchHHHH
Q 002657 303 EAQKKFKVACLSDKDAWELFCHKVGEETLNNHPDIPELAQTVAKECGGMPLALIT 357 (896)
Q Consensus 303 ~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~ 357 (896)
.....+.+.+++.++....+.+.+....... -.+.+..|++.++|.+..+..
T Consensus 169 SR~~~i~f~~l~~~el~~~L~~~a~~egl~i---~~eal~~La~~s~Gdlr~al~ 220 (585)
T PRK14950 169 SRCQRFDFHRHSVADMAAHLRKIAAAEGINL---EPGALEAIARAATGSMRDAEN 220 (585)
T ss_pred hccceeeCCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHH
Confidence 3346788999999999988888775443211 246688999999998865543
No 138
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.84 E-value=0.00051 Score=70.53 Aligned_cols=190 Identities=14% Similarity=0.106 Sum_probs=111.4
Q ss_pred HHHHHHHhccC---CCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCC----eEEEEEeCCccCHHHHHHHHHHhcCCCC
Q 002657 163 LEQVWRCLVEE---PAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFD----CVIWVVVSKDLRLENIQEIIGGKIGLMN 235 (896)
Q Consensus 163 ~~~l~~~L~~~---~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~----~~~wv~~~~~~~~~~~~~~i~~~l~~~~ 235 (896)
++++.+++..+ ..+-+.|+|.+|.|||++++++.+... ....-+ .++.|......+...++..|+.+++.+.
T Consensus 46 L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp-~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~ 124 (302)
T PF05621_consen 46 LDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHP-PQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPY 124 (302)
T ss_pred HHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCC-CCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCccc
Confidence 44444545442 446699999999999999999998763 211111 4777888888999999999999999876
Q ss_pred ccccccCHHHHHHHHHHHhCC-ceEEEEEecCCCc-----ccccccc---ccCCCCCCCCcEEEEecCCHHHHhhh----
Q 002657 236 ESWKSKSLQEKSLDIFKILGE-KKFVLLLDDLWQR-----VDLTKVG---VPLPSPQSSASKVVFTTRSEEICGLM---- 302 (896)
Q Consensus 236 ~~~~~~~~~~~~~~l~~~l~~-kr~LlVlDdv~~~-----~~~~~l~---~~~~~~~~~~s~iivTtR~~~v~~~~---- 302 (896)
.. ......+.......++. +.=+||+|++.+. ..-..+. ..+. ..-.-+-|.|-|+.-.-+-..
T Consensus 125 ~~--~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~-NeL~ipiV~vGt~~A~~al~~D~QL 201 (302)
T PF05621_consen 125 RP--RDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLG-NELQIPIVGVGTREAYRALRTDPQL 201 (302)
T ss_pred CC--CCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHh-hccCCCeEEeccHHHHHHhccCHHH
Confidence 42 23344444444455543 3448999999652 1111111 1111 222234556666543222111
Q ss_pred -ccCcceeccCCChHhH-HHHHHHHhcCcc--cCCCCChHHHHHHHHHHhCCCchHHH
Q 002657 303 -EAQKKFKVACLSDKDA-WELFCHKVGEET--LNNHPDIPELAQTVAKECGGMPLALI 356 (896)
Q Consensus 303 -~~~~~~~l~~L~~~e~-~~Lf~~~~~~~~--~~~~~~~~~~~~~i~~~~~GlPlai~ 356 (896)
+-..++.+.....++- ..|+......-. ..+.-...+++..|...++|+.=-+.
T Consensus 202 a~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~ 259 (302)
T PF05621_consen 202 ASRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELS 259 (302)
T ss_pred HhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHH
Confidence 1234667777766544 444433221111 12223447889999999999875443
No 139
>PRK06620 hypothetical protein; Validated
Probab=97.84 E-value=6.8e-05 Score=75.05 Aligned_cols=135 Identities=10% Similarity=0.017 Sum_probs=81.1
Q ss_pred eEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHhC
Q 002657 176 GIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDLRLENIQEIIGGKIGLMNESWKSKSLQEKSLDIFKILG 255 (896)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 255 (896)
+.+.|+|++|+|||+|++.+++.. .. .++. ..+. .. +..+
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~---~~-----~~~~--~~~~----------------------~~--------~~~~ 84 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLS---NA-----YIIK--DIFF----------------------NE--------EILE 84 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhcc---CC-----EEcc--hhhh----------------------ch--------hHHh
Confidence 668999999999999999987764 11 1211 0000 00 0111
Q ss_pred CceEEEEEecCCCccccccccccCCCCCCCCcEEEEecCCHH-------HHhhhccCcceeccCCChHhHHHHHHHHhcC
Q 002657 256 EKKFVLLLDDLWQRVDLTKVGVPLPSPQSSASKVVFTTRSEE-------ICGLMEAQKKFKVACLSDKDAWELFCHKVGE 328 (896)
Q Consensus 256 ~kr~LlVlDdv~~~~~~~~l~~~~~~~~~~~s~iivTtR~~~-------v~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~ 328 (896)
..-++++||+....+ ..+...+......|..||+|++... ..+.+....++++++++.++-..++.+.+..
T Consensus 85 -~~d~lliDdi~~~~~-~~lf~l~N~~~e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~ 162 (214)
T PRK06620 85 -KYNAFIIEDIENWQE-PALLHIFNIINEKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSI 162 (214)
T ss_pred -cCCEEEEeccccchH-HHHHHHHHHHHhcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHH
Confidence 224788999963221 1111111101245678999988432 3344455668999999999988888887753
Q ss_pred cccCCCCChHHHHHHHHHHhCCCchHH
Q 002657 329 ETLNNHPDIPELAQTVAKECGGMPLAL 355 (896)
Q Consensus 329 ~~~~~~~~~~~~~~~i~~~~~GlPlai 355 (896)
.... --+++..-|++.+.|.--.+
T Consensus 163 ~~l~---l~~ev~~~L~~~~~~d~r~l 186 (214)
T PRK06620 163 SSVT---ISRQIIDFLLVNLPREYSKI 186 (214)
T ss_pred cCCC---CCHHHHHHHHHHccCCHHHH
Confidence 3211 12567888888887755444
No 140
>CHL00181 cbbX CbbX; Provisional
Probab=97.84 E-value=0.00037 Score=73.11 Aligned_cols=133 Identities=14% Similarity=0.148 Sum_probs=72.1
Q ss_pred EEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHhCC
Q 002657 177 IVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDLRLENIQEIIGGKIGLMNESWKSKSLQEKSLDIFKILGE 256 (896)
Q Consensus 177 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~ 256 (896)
.+.++|++|+||||+|+.+++.... .+.-...-|+.++.. .+.... .+. ........+.+ ..+
T Consensus 61 ~ill~G~pGtGKT~lAr~la~~~~~-~g~~~~~~~~~v~~~----~l~~~~---~g~--------~~~~~~~~l~~-a~g 123 (287)
T CHL00181 61 HMSFTGSPGTGKTTVALKMADILYK-LGYIKKGHLLTVTRD----DLVGQY---IGH--------TAPKTKEVLKK-AMG 123 (287)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHH-cCCCCCCceEEecHH----HHHHHH---hcc--------chHHHHHHHHH-ccC
Confidence 4788999999999999999886521 111111224544421 222111 110 11111122222 222
Q ss_pred ceEEEEEecCCCc-----------cccccccccCCCCCCCCcEEEEecCCHHHHhhh--------ccCcceeccCCChHh
Q 002657 257 KKFVLLLDDLWQR-----------VDLTKVGVPLPSPQSSASKVVFTTRSEEICGLM--------EAQKKFKVACLSDKD 317 (896)
Q Consensus 257 kr~LlVlDdv~~~-----------~~~~~l~~~~~~~~~~~s~iivTtR~~~v~~~~--------~~~~~~~l~~L~~~e 317 (896)
-+|++|++... +....+...+. ....+.+||+++......... .....+.+++++.+|
T Consensus 124 --gVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me-~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~e 200 (287)
T CHL00181 124 --GVLFIDEAYYLYKPDNERDYGSEAIEILLQVME-NQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEE 200 (287)
T ss_pred --CEEEEEccchhccCCCccchHHHHHHHHHHHHh-cCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHH
Confidence 48999999642 11122223332 333456777777654432211 123468999999999
Q ss_pred HHHHHHHHhcCc
Q 002657 318 AWELFCHKVGEE 329 (896)
Q Consensus 318 ~~~Lf~~~~~~~ 329 (896)
..+++.+.+...
T Consensus 201 l~~I~~~~l~~~ 212 (287)
T CHL00181 201 LLQIAKIMLEEQ 212 (287)
T ss_pred HHHHHHHHHHHh
Confidence 999988887543
No 141
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.84 E-value=0.00012 Score=81.82 Aligned_cols=160 Identities=19% Similarity=0.157 Sum_probs=94.0
Q ss_pred CeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHh
Q 002657 175 AGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDLRLENIQEIIGGKIGLMNESWKSKSLQEKSLDIFKIL 254 (896)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 254 (896)
...+.|+|..|+|||+|++.+++... ....-..++|++. .++...+...+... .. ..+.+.+
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~-~~~~~~~v~yi~~------~~~~~~~~~~~~~~-------~~----~~~~~~~ 197 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEIL-ENNPNAKVVYVSS------EKFTNDFVNALRNN-------KM----EEFKEKY 197 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHH-HhCCCCcEEEEEH------HHHHHHHHHHHHcC-------CH----HHHHHHH
Confidence 35688999999999999999999872 1111124556643 33444454444311 11 2233333
Q ss_pred CCceEEEEEecCCCccc---c-ccccccCCCCCCCCcEEEEecCCH-H--------HHhhhccCcceeccCCChHhHHHH
Q 002657 255 GEKKFVLLLDDLWQRVD---L-TKVGVPLPSPQSSASKVVFTTRSE-E--------ICGLMEAQKKFKVACLSDKDAWEL 321 (896)
Q Consensus 255 ~~kr~LlVlDdv~~~~~---~-~~l~~~~~~~~~~~s~iivTtR~~-~--------v~~~~~~~~~~~l~~L~~~e~~~L 321 (896)
++ .-+|||||+..... + +.+...+......+..+|+|+... . +.+.+.....+.+++.+.++-..+
T Consensus 198 ~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~i 276 (405)
T TIGR00362 198 RS-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAI 276 (405)
T ss_pred Hh-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHH
Confidence 32 33889999964221 1 122221210112345678877642 1 222333345789999999999999
Q ss_pred HHHHhcCcccCCCCChHHHHHHHHHHhCCCchHHH
Q 002657 322 FCHKVGEETLNNHPDIPELAQTVAKECGGMPLALI 356 (896)
Q Consensus 322 f~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~ 356 (896)
+.+.+......- -+++...|++.+.|.+-.+.
T Consensus 277 l~~~~~~~~~~l---~~e~l~~ia~~~~~~~r~l~ 308 (405)
T TIGR00362 277 LQKKAEEEGLEL---PDEVLEFIAKNIRSNVRELE 308 (405)
T ss_pred HHHHHHHcCCCC---CHHHHHHHHHhcCCCHHHHH
Confidence 999886543222 25778888888888766443
No 142
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.83 E-value=0.00012 Score=79.69 Aligned_cols=104 Identities=17% Similarity=0.130 Sum_probs=70.2
Q ss_pred ccchHHHHHHHHHHhccCCCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHhcCCCC
Q 002657 156 VVGLQSQLEQVWRCLVEEPAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDLRLENIQEIIGGKIGLMN 235 (896)
Q Consensus 156 ~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~ 235 (896)
+++.+...+.+...|.. .+.|.++|++|+|||++|+.+++.. .....|+.+.||++++..+..++...+.- ..
T Consensus 177 ~~i~e~~le~l~~~L~~--~~~iil~GppGtGKT~lA~~la~~l-~~~~~~~~v~~VtFHpsySYeDFI~G~rP----~~ 249 (459)
T PRK11331 177 LFIPETTIETILKRLTI--KKNIILQGPPGVGKTFVARRLAYLL-TGEKAPQRVNMVQFHQSYSYEDFIQGYRP----NG 249 (459)
T ss_pred ccCCHHHHHHHHHHHhc--CCCEEEECCCCCCHHHHHHHHHHHh-cCCcccceeeEEeecccccHHHHhcccCC----CC
Confidence 67888899999998875 3567789999999999999999987 44557888999999998887776543311 10
Q ss_pred ccccccCHHHHHHHHHHHh--CCceEEEEEecCC
Q 002657 236 ESWKSKSLQEKSLDIFKIL--GEKKFVLLLDDLW 267 (896)
Q Consensus 236 ~~~~~~~~~~~~~~l~~~l--~~kr~LlVlDdv~ 267 (896)
......+ ......+...- .++++++|+|++.
T Consensus 250 vgy~~~~-G~f~~~~~~A~~~p~~~~vliIDEIN 282 (459)
T PRK11331 250 VGFRRKD-GIFYNFCQQAKEQPEKKYVFIIDEIN 282 (459)
T ss_pred CCeEecC-chHHHHHHHHHhcccCCcEEEEehhh
Confidence 0000000 01111122222 2478999999995
No 143
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.82 E-value=4.6e-06 Score=82.79 Aligned_cols=108 Identities=22% Similarity=0.164 Sum_probs=70.6
Q ss_pred CccEEecccccccccch--hhhccCCCCcEEEccCCcccccc---cccccCCCCCCEEeccCCCccccchhh-hcCCCCC
Q 002657 537 HLLTLFLNSNELKIITN--DFFQFMPSLKVLSLSRNRRLTNL---QLGISKLVSLQHLDLSLTNIEKLSGEL-KALVNLK 610 (896)
Q Consensus 537 ~L~~L~l~~n~l~~i~~--~~~~~l~~L~~L~Ls~~~~i~~l---p~~i~~L~~L~~L~Ls~~~i~~lp~~l-~~L~~L~ 610 (896)
-+..|.+.++.+..+.. .+-..++.++.|||.+| .|... -.-+.+|++|++|+|++|.+..--..+ -.+.+|+
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N-~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~ 124 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGN-LISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLR 124 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccc-hhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceE
Confidence 34456666665554432 22346789999999999 77643 334678999999999999765332222 3567899
Q ss_pred EeeccccccccCCcHHHHhccccccEEEeeccCCC
Q 002657 611 CLNLEYTWSLVTIPQQLIASFLRLHVLRMFGVGDD 645 (896)
Q Consensus 611 ~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~ 645 (896)
+|-|.|+..-..-....+..++.+++|.++.|...
T Consensus 125 ~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~r 159 (418)
T KOG2982|consen 125 VLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLR 159 (418)
T ss_pred EEEEcCCCCChhhhhhhhhcchhhhhhhhccchhh
Confidence 99998873211112233677788888888876443
No 144
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.81 E-value=0.00012 Score=82.89 Aligned_cols=159 Identities=19% Similarity=0.160 Sum_probs=94.5
Q ss_pred CeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHh
Q 002657 175 AGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDLRLENIQEIIGGKIGLMNESWKSKSLQEKSLDIFKIL 254 (896)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 254 (896)
..-+.|+|++|+|||+|++.+++... ....-..+.+++. .++...+...+... .. ..+.+.+
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~-~~~~~~~v~yi~~------~~~~~~~~~~~~~~-------~~----~~~~~~~ 209 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYIL-EKNPNAKVVYVTS------EKFTNDFVNALRNN-------TM----EEFKEKY 209 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH-HhCCCCeEEEEEH------HHHHHHHHHHHHcC-------cH----HHHHHHH
Confidence 45689999999999999999999872 1111223556643 23334444443211 11 2233334
Q ss_pred CCceEEEEEecCCCccc----cccccccCCCCCCCCcEEEEecCCHH---------HHhhhccCcceeccCCChHhHHHH
Q 002657 255 GEKKFVLLLDDLWQRVD----LTKVGVPLPSPQSSASKVVFTTRSEE---------ICGLMEAQKKFKVACLSDKDAWEL 321 (896)
Q Consensus 255 ~~kr~LlVlDdv~~~~~----~~~l~~~~~~~~~~~s~iivTtR~~~---------v~~~~~~~~~~~l~~L~~~e~~~L 321 (896)
+ +.-+|||||+..... .+.+...+......|..||+||.... +.+.+.....+++++.+.++-.++
T Consensus 210 ~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~i 288 (450)
T PRK00149 210 R-SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAI 288 (450)
T ss_pred h-cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHH
Confidence 3 244899999963211 12222211101123455788776431 223344456799999999999999
Q ss_pred HHHHhcCcccCCCCChHHHHHHHHHHhCCCchHH
Q 002657 322 FCHKVGEETLNNHPDIPELAQTVAKECGGMPLAL 355 (896)
Q Consensus 322 f~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai 355 (896)
+.+.+...... --+++...|++.++|..-.+
T Consensus 289 l~~~~~~~~~~---l~~e~l~~ia~~~~~~~R~l 319 (450)
T PRK00149 289 LKKKAEEEGID---LPDEVLEFIAKNITSNVREL 319 (450)
T ss_pred HHHHHHHcCCC---CCHHHHHHHHcCcCCCHHHH
Confidence 99988643212 22567888999998877644
No 145
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.80 E-value=0.00057 Score=77.02 Aligned_cols=176 Identities=13% Similarity=0.142 Sum_probs=105.3
Q ss_pred ccchHHHHHHHHHHhccCCCe-EEEEEcCCCchHHHHHHHHHhhhccCCC-C----------------CC-eEEEEEeCC
Q 002657 156 VVGLQSQLEQVWRCLVEEPAG-IVGLYGMGGVGKTTLLTHINNKFLQVPN-D----------------FD-CVIWVVVSK 216 (896)
Q Consensus 156 ~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~-~----------------f~-~~~wv~~~~ 216 (896)
++|-+...+.+...+..+... ++.++|+.|+||||+|+.+++....... . +. .++.+..+.
T Consensus 16 iiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~eldaas 95 (535)
T PRK08451 16 LIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDIIEMDAAS 95 (535)
T ss_pred ccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEEEecccc
Confidence 899999999999999887665 5689999999999999998887521000 0 00 011111111
Q ss_pred ccCHHHHHHHHHHhcCCCCccccccCHHHHHHHHHH--H--hCCceEEEEEecCCCc--cccccccccCCCCCCCCcEEE
Q 002657 217 DLRLENIQEIIGGKIGLMNESWKSKSLQEKSLDIFK--I--LGEKKFVLLLDDLWQR--VDLTKVGVPLPSPQSSASKVV 290 (896)
Q Consensus 217 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~--~--l~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~~s~ii 290 (896)
... .++....+.. + ..+++-++|+|++... .....+...+. .....+++|
T Consensus 96 ~~g-----------------------Id~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LE-Epp~~t~FI 151 (535)
T PRK08451 96 NRG-----------------------IDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLE-EPPSYVKFI 151 (535)
T ss_pred ccC-----------------------HHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHh-hcCCceEEE
Confidence 111 1222221111 0 1145568899999643 23444444443 223456666
Q ss_pred EecCCH-HHH-hhhccCcceeccCCChHhHHHHHHHHhcCcccCCCCChHHHHHHHHHHhCCCchHHHHH
Q 002657 291 FTTRSE-EIC-GLMEAQKKFKVACLSDKDAWELFCHKVGEETLNNHPDIPELAQTVAKECGGMPLALITI 358 (896)
Q Consensus 291 vTtR~~-~v~-~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~ 358 (896)
++|.+. .+. ...+....+++.+++.++....+.+.+......- -.+.+..|++.++|.+--+..+
T Consensus 152 L~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i---~~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 152 LATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVSY---EPEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred EEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCcHHHHHHH
Confidence 666553 221 1223356899999999999998887765443211 2566789999999988555433
No 146
>PF14516 AAA_35: AAA-like domain
Probab=97.79 E-value=0.0013 Score=70.86 Aligned_cols=201 Identities=15% Similarity=0.182 Sum_probs=117.7
Q ss_pred CcccchHHHHHHHHHHhccCCCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCc-----cCHHHHH----
Q 002657 154 PIVVGLQSQLEQVWRCLVEEPAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKD-----LRLENIQ---- 224 (896)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~-----~~~~~~~---- 224 (896)
+..|.|...-+++.+.|.+. ...+.|.|+-.+|||+|...+.+.. + +..+. ++++++..- .+...++
T Consensus 11 ~~Yi~R~~~e~~~~~~i~~~-G~~~~I~apRq~GKTSll~~l~~~l-~-~~~~~-~v~id~~~~~~~~~~~~~~f~~~~~ 86 (331)
T PF14516_consen 11 PFYIERPPAEQECYQEIVQP-GSYIRIKAPRQMGKTSLLLRLLERL-Q-QQGYR-CVYIDLQQLGSAIFSDLEQFLRWFC 86 (331)
T ss_pred CcccCchHHHHHHHHHHhcC-CCEEEEECcccCCHHHHHHHHHHHH-H-HCCCE-EEEEEeecCCCcccCCHHHHHHHHH
Confidence 33578986667777777663 4689999999999999999999887 2 23443 457776542 2345444
Q ss_pred HHHHHhcCCCCc---ccc--ccCHHHHHHHHHHHh---CCceEEEEEecCCCcccc----ccccccCCC-----C---CC
Q 002657 225 EIIGGKIGLMNE---SWK--SKSLQEKSLDIFKIL---GEKKFVLLLDDLWQRVDL----TKVGVPLPS-----P---QS 284 (896)
Q Consensus 225 ~~i~~~l~~~~~---~~~--~~~~~~~~~~l~~~l---~~kr~LlVlDdv~~~~~~----~~l~~~~~~-----~---~~ 284 (896)
..+.++++.... .|. ..........+.+++ .+++.+|++|+++..... .++...++. . .-
T Consensus 87 ~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~~~ 166 (331)
T PF14516_consen 87 EEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNPIW 166 (331)
T ss_pred HHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCccc
Confidence 444555554321 011 112222333344432 268999999999643211 111111110 0 00
Q ss_pred CCc-EEEEecCCHHHH-hh----hccCcceeccCCChHhHHHHHHHHhcCcccCCCCChHHHHHHHHHHhCCCchHHHHH
Q 002657 285 SAS-KVVFTTRSEEIC-GL----MEAQKKFKVACLSDKDAWELFCHKVGEETLNNHPDIPELAQTVAKECGGMPLALITI 358 (896)
Q Consensus 285 ~~s-~iivTtR~~~v~-~~----~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~ 358 (896)
..- -|++.+...... .. ......++|.+++.+|...|..+.-..-. ....++|...+||+|.-+..+
T Consensus 167 ~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~~~-------~~~~~~l~~~tgGhP~Lv~~~ 239 (331)
T PF14516_consen 167 QKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLEFS-------QEQLEQLMDWTGGHPYLVQKA 239 (331)
T ss_pred ceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhccCC-------HHHHHHHHHHHCCCHHHHHHH
Confidence 111 222222111111 11 12245789999999999999887642211 233899999999999999999
Q ss_pred HHhhcCC
Q 002657 359 GRAMSCK 365 (896)
Q Consensus 359 ~~~l~~~ 365 (896)
+..+...
T Consensus 240 ~~~l~~~ 246 (331)
T PF14516_consen 240 CYLLVEE 246 (331)
T ss_pred HHHHHHc
Confidence 9998763
No 147
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.79 E-value=0.00019 Score=79.99 Aligned_cols=154 Identities=12% Similarity=0.072 Sum_probs=90.4
Q ss_pred CeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHh
Q 002657 175 AGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDLRLENIQEIIGGKIGLMNESWKSKSLQEKSLDIFKIL 254 (896)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 254 (896)
..-+.|+|+.|+|||+|++.+++.... ....+++++ ...+...+...+... . ...+++.+
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~---~~~~v~yi~------~~~f~~~~~~~l~~~-------~----~~~f~~~~ 200 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRE---SGGKILYVR------SELFTEHLVSAIRSG-------E----MQRFRQFY 200 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHH---cCCCEEEee------HHHHHHHHHHHHhcc-------h----HHHHHHHc
Confidence 356889999999999999999998721 223345554 234444555444311 1 12344444
Q ss_pred CCceEEEEEecCCCccc----cccccccCCCCCCCCcEEEEecCCH---------HHHhhhccCcceeccCCChHhHHHH
Q 002657 255 GEKKFVLLLDDLWQRVD----LTKVGVPLPSPQSSASKVVFTTRSE---------EICGLMEAQKKFKVACLSDKDAWEL 321 (896)
Q Consensus 255 ~~kr~LlVlDdv~~~~~----~~~l~~~~~~~~~~~s~iivTtR~~---------~v~~~~~~~~~~~l~~L~~~e~~~L 321 (896)
+. .-+|++||+..... .+.+...+......|..||+||... .+.+.+..+..+++.+++.++-.++
T Consensus 201 ~~-~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~i 279 (445)
T PRK12422 201 RN-VDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSF 279 (445)
T ss_pred cc-CCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHH
Confidence 33 34888999954321 1122221110012355788888642 1233344457889999999999999
Q ss_pred HHHHhcCcccCCCCChHHHHHHHHHHhCCCc
Q 002657 322 FCHKVGEETLNNHPDIPELAQTVAKECGGMP 352 (896)
Q Consensus 322 f~~~~~~~~~~~~~~~~~~~~~i~~~~~GlP 352 (896)
+.+++......- -+++..-|+..+.|.-
T Consensus 280 L~~k~~~~~~~l---~~evl~~la~~~~~di 307 (445)
T PRK12422 280 LERKAEALSIRI---EETALDFLIEALSSNV 307 (445)
T ss_pred HHHHHHHcCCCC---CHHHHHHHHHhcCCCH
Confidence 998876543222 2556666777776543
No 148
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.77 E-value=0.00018 Score=74.55 Aligned_cols=167 Identities=18% Similarity=0.189 Sum_probs=103.6
Q ss_pred CcccchHHHHHHHHHHhccCCC---eEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHh
Q 002657 154 PIVVGLQSQLEQVWRCLVEEPA---GIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDLRLENIQEIIGGK 230 (896)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~---~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 230 (896)
+.+.+|+.+++.+..++.+... ..|.|+|.+|.|||.+++++.+.. . ...+|+++-..++.+.++..|+.+
T Consensus 6 ~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~-n-----~~~vw~n~~ecft~~~lle~IL~~ 79 (438)
T KOG2543|consen 6 PNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKL-N-----LENVWLNCVECFTYAILLEKILNK 79 (438)
T ss_pred cCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhc-C-----CcceeeehHHhccHHHHHHHHHHH
Confidence 4478999999999999977533 445889999999999999999876 2 135899999999999999999999
Q ss_pred cCCCC-ccccc-c---CHHHHHHHHHH--HhC--CceEEEEEecCCCcccccccccc----CCC-CCCCCcEEEEecCCH
Q 002657 231 IGLMN-ESWKS-K---SLQEKSLDIFK--ILG--EKKFVLLLDDLWQRVDLTKVGVP----LPS-PQSSASKVVFTTRSE 296 (896)
Q Consensus 231 l~~~~-~~~~~-~---~~~~~~~~l~~--~l~--~kr~LlVlDdv~~~~~~~~l~~~----~~~-~~~~~s~iivTtR~~ 296 (896)
.+... ++... . ........+.+ ..+ ++.++||||+++...+.+.+..+ +.. ...+...|+...-.-
T Consensus 80 ~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils~~~~ 159 (438)
T KOG2543|consen 80 SQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILSAPSC 159 (438)
T ss_pred hccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEecccc
Confidence 86222 11111 1 11122222333 122 45899999999765544432110 000 112233333322222
Q ss_pred H-H-HhhhccC--cceeccCCChHhHHHHHHHHh
Q 002657 297 E-I-CGLMEAQ--KKFKVACLSDKDAWELFCHKV 326 (896)
Q Consensus 297 ~-v-~~~~~~~--~~~~l~~L~~~e~~~Lf~~~~ 326 (896)
+ . ...++.. .++.....+.+|..+++.+.-
T Consensus 160 e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~ 193 (438)
T KOG2543|consen 160 EKQYLINTGTLEIVVLHFPQYSVEETQVILSRDN 193 (438)
T ss_pred HHHhhcccCCCCceEEecCCCCHHHHHHHHhcCC
Confidence 1 1 1112333 346778889999988886643
No 149
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.77 E-value=0.00068 Score=78.69 Aligned_cols=192 Identities=13% Similarity=0.112 Sum_probs=106.0
Q ss_pred ccchHHHHHHHHHHhccCCC-eEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHhcCCC
Q 002657 156 VVGLQSQLEQVWRCLVEEPA-GIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDLRLENIQEIIGGKIGLM 234 (896)
Q Consensus 156 ~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 234 (896)
++|.+..++.|..++..+.. ..+.++|+.|+||||+|+.+++... ....+... ..........+.+.......
T Consensus 18 liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~--c~~~~~~~----~~~Cg~C~~C~~i~~g~h~D 91 (620)
T PRK14948 18 LVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLN--CLNSDKPT----PEPCGKCELCRAIAAGNALD 91 (620)
T ss_pred ccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhc--CCCcCCCC----CCCCcccHHHHHHhcCCCcc
Confidence 78999999999999987653 5678999999999999999998862 11111000 00111122222222221110
Q ss_pred C---ccccccCHHHHHHHHHHHh-----CCceEEEEEecCCCc--cccccccccCCCCCCCCcEEEE-ecCCHHHHh-hh
Q 002657 235 N---ESWKSKSLQEKSLDIFKIL-----GEKKFVLLLDDLWQR--VDLTKVGVPLPSPQSSASKVVF-TTRSEEICG-LM 302 (896)
Q Consensus 235 ~---~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~~s~iiv-TtR~~~v~~-~~ 302 (896)
. ........++.. .+.+.. .+++-++|+|+++.. ..+..+...+. .......+|+ |+....+.. ..
T Consensus 92 ~~ei~~~~~~~vd~IR-eii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LE-ePp~~tvfIL~t~~~~~llpTIr 169 (620)
T PRK14948 92 VIEIDAASNTGVDNIR-ELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLE-EPPPRVVFVLATTDPQRVLPTII 169 (620)
T ss_pred EEEEeccccCCHHHHH-HHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHh-cCCcCeEEEEEeCChhhhhHHHH
Confidence 0 000011121221 111221 244568899999643 33455544443 2223444444 444333322 22
Q ss_pred ccCcceeccCCChHhHHHHHHHHhcCcccCCCCChHHHHHHHHHHhCCCchHHHHH
Q 002657 303 EAQKKFKVACLSDKDAWELFCHKVGEETLNNHPDIPELAQTVAKECGGMPLALITI 358 (896)
Q Consensus 303 ~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~ 358 (896)
.....+++.+++.++....+.+.+....... -.+.+..|++.++|.+..+..+
T Consensus 170 SRc~~~~f~~l~~~ei~~~L~~ia~kegi~i---s~~al~~La~~s~G~lr~A~~l 222 (620)
T PRK14948 170 SRCQRFDFRRIPLEAMVQHLSEIAEKESIEI---EPEALTLVAQRSQGGLRDAESL 222 (620)
T ss_pred hheeEEEecCCCHHHHHHHHHHHHHHhCCCC---CHHHHHHHHHHcCCCHHHHHHH
Confidence 3456788889999998888877665432111 1355788999999987655433
No 150
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.74 E-value=6.5e-05 Score=80.63 Aligned_cols=80 Identities=18% Similarity=0.319 Sum_probs=53.9
Q ss_pred ccceEEEeecccccccccCCCCCCccEEecccc-cccccchhhhccCCCCcEEEccCCcccccccccccCCCCCCEEecc
Q 002657 514 ENVSRLSLMQNRIKNLSEIPKCPHLLTLFLNSN-ELKIITNDFFQFMPSLKVLSLSRNRRLTNLQLGISKLVSLQHLDLS 592 (896)
Q Consensus 514 ~~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~n-~l~~i~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~Ls 592 (896)
.++++|++++|.+..+|.++ ++|++|.+++| .++.+|.. + ..+|++|++++|..+..+|. +|+.|+++
T Consensus 52 ~~l~~L~Is~c~L~sLP~LP--~sLtsL~Lsnc~nLtsLP~~-L--P~nLe~L~Ls~Cs~L~sLP~------sLe~L~L~ 120 (426)
T PRK15386 52 RASGRLYIKDCDIESLPVLP--NELTEITIENCNNLTTLPGS-I--PEGLEKLTVCHCPEISGLPE------SVRSLEIK 120 (426)
T ss_pred cCCCEEEeCCCCCcccCCCC--CCCcEEEccCCCCcccCCch-h--hhhhhheEccCccccccccc------ccceEEeC
Confidence 46778888888777776432 36888888876 56666643 3 35788888888867777774 36666666
Q ss_pred CCC---ccccchhhh
Q 002657 593 LTN---IEKLSGELK 604 (896)
Q Consensus 593 ~~~---i~~lp~~l~ 604 (896)
++. +..+|.++.
T Consensus 121 ~n~~~~L~~LPssLk 135 (426)
T PRK15386 121 GSATDSIKNVPNGLT 135 (426)
T ss_pred CCCCcccccCcchHh
Confidence 654 456665543
No 151
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.72 E-value=0.00024 Score=86.21 Aligned_cols=154 Identities=17% Similarity=0.209 Sum_probs=90.7
Q ss_pred ccchHHHHHHHHHHhccCCCeEEEEEcCCCchHHHHHHHHHhhhccCCCC---CCeEEEEEeCCccCHHHHHHHHHHhcC
Q 002657 156 VVGLQSQLEQVWRCLVEEPAGIVGLYGMGGVGKTTLLTHINNKFLQVPND---FDCVIWVVVSKDLRLENIQEIIGGKIG 232 (896)
Q Consensus 156 ~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~---f~~~~wv~~~~~~~~~~~~~~i~~~l~ 232 (896)
++||+++++++++.|......-+.++|++|+|||++|+.++......... -+..+|. + +...++. +
T Consensus 181 ~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-l----~~~~l~a------g 249 (821)
T CHL00095 181 VIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-L----DIGLLLA------G 249 (821)
T ss_pred CCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-e----eHHHHhc------c
Confidence 89999999999999987655566799999999999999998876211111 1234442 1 2222211 1
Q ss_pred CCCccccccCHHHHHHHHHHHh-CCceEEEEEecCCCcc---------ccccccccCCCCCCCCcEEEEecCCHHHHhh-
Q 002657 233 LMNESWKSKSLQEKSLDIFKIL-GEKKFVLLLDDLWQRV---------DLTKVGVPLPSPQSSASKVVFTTRSEEICGL- 301 (896)
Q Consensus 233 ~~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~~---------~~~~l~~~~~~~~~~~s~iivTtR~~~v~~~- 301 (896)
.. .....++....+.+.+ +.++.+|++|++.... +...+..+.. ....-++|.+|...+....
T Consensus 250 ~~----~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l--~rg~l~~IgaTt~~ey~~~i 323 (821)
T CHL00095 250 TK----YRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPAL--ARGELQCIGATTLDEYRKHI 323 (821)
T ss_pred CC----CccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHH--hCCCcEEEEeCCHHHHHHHH
Confidence 10 1122333444444333 3568999999995211 1112222221 1223566766666554221
Q ss_pred ------hccCcceeccCCChHhHHHHHHHHh
Q 002657 302 ------MEAQKKFKVACLSDKDAWELFCHKV 326 (896)
Q Consensus 302 ------~~~~~~~~l~~L~~~e~~~Lf~~~~ 326 (896)
......+.+...+.++..+++....
T Consensus 324 e~D~aL~rRf~~I~v~ep~~~e~~aILr~l~ 354 (821)
T CHL00095 324 EKDPALERRFQPVYVGEPSVEETIEILFGLR 354 (821)
T ss_pred hcCHHHHhcceEEecCCCCHHHHHHHHHHHH
Confidence 1233567888899999888887643
No 152
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.72 E-value=0.00018 Score=79.35 Aligned_cols=169 Identities=17% Similarity=0.197 Sum_probs=94.7
Q ss_pred ccchHHHHHHHHHHhcc-------------CCCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHH
Q 002657 156 VVGLQSQLEQVWRCLVE-------------EPAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDLRLEN 222 (896)
Q Consensus 156 ~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~ 222 (896)
+.|.+..++++.+.+.- ...+-+.++|++|+|||++|+.+++.. ...| +.+... .
T Consensus 185 IgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el---~~~f-----i~V~~s----e 252 (438)
T PTZ00361 185 IGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANET---SATF-----LRVVGS----E 252 (438)
T ss_pred hcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhh---CCCE-----EEEecc----h
Confidence 57899988888877631 134568899999999999999999976 2333 222111 1
Q ss_pred HHHHHHHhcCCCCccccccCHHHHHHHHHHHhCCceEEEEEecCCCccc----------------cccccccCCC-CCCC
Q 002657 223 IQEIIGGKIGLMNESWKSKSLQEKSLDIFKILGEKKFVLLLDDLWQRVD----------------LTKVGVPLPS-PQSS 285 (896)
Q Consensus 223 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~----------------~~~l~~~~~~-~~~~ 285 (896)
+.. .. ...........+.....+.+.+|+||+++.... +..+...+.. ....
T Consensus 253 L~~----k~-------~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~ 321 (438)
T PTZ00361 253 LIQ----KY-------LGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRG 321 (438)
T ss_pred hhh----hh-------cchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccC
Confidence 111 10 011111122222233346788999999852100 0011111110 1233
Q ss_pred CcEEEEecCCHHHHhh--h---ccCcceeccCCChHhHHHHHHHHhcCcccCCCCChHHHHHHHHHHhCCC
Q 002657 286 ASKVVFTTRSEEICGL--M---EAQKKFKVACLSDKDAWELFCHKVGEETLNNHPDIPELAQTVAKECGGM 351 (896)
Q Consensus 286 ~s~iivTtR~~~v~~~--~---~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~Gl 351 (896)
+.+||.||...+.... . .-...+.+...+.++..++|..++.........++ ..++..+.|+
T Consensus 322 ~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl----~~la~~t~g~ 388 (438)
T PTZ00361 322 DVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDL----EEFIMAKDEL 388 (438)
T ss_pred CeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCH----HHHHHhcCCC
Confidence 5678888876544221 1 22457899999999999999987755432222333 4455555554
No 153
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.71 E-value=0.00034 Score=75.54 Aligned_cols=143 Identities=13% Similarity=0.127 Sum_probs=82.0
Q ss_pred ccchHHHHHHHHHHhccCCC-eEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHhcCCC
Q 002657 156 VVGLQSQLEQVWRCLVEEPA-GIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDLRLENIQEIIGGKIGLM 234 (896)
Q Consensus 156 ~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 234 (896)
++|.+...+.+..++..+.. .++.++|++|+||||+|+.+++.. ... ...+..+. .....+...+......
T Consensus 23 ~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~---~~~---~~~i~~~~-~~~~~i~~~l~~~~~~- 94 (316)
T PHA02544 23 CILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEV---GAE---VLFVNGSD-CRIDFVRNRLTRFAST- 94 (316)
T ss_pred hcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHh---Ccc---ceEeccCc-ccHHHHHHHHHHHHHh-
Confidence 79999999999999987654 566679999999999999998875 121 23344333 1111111111110000
Q ss_pred CccccccCHHHHHHHHHHHhCCceEEEEEecCCCc--cc-cccccccCCCCCCCCcEEEEecCCHHH--HhhhccCccee
Q 002657 235 NESWKSKSLQEKSLDIFKILGEKKFVLLLDDLWQR--VD-LTKVGVPLPSPQSSASKVVFTTRSEEI--CGLMEAQKKFK 309 (896)
Q Consensus 235 ~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~--~~-~~~l~~~~~~~~~~~s~iivTtR~~~v--~~~~~~~~~~~ 309 (896)
. -+.+.+-++|+||+... .+ ...+...+. ....++++|+||..... ....+....+.
T Consensus 95 ----------------~-~~~~~~~vliiDe~d~l~~~~~~~~L~~~le-~~~~~~~~Ilt~n~~~~l~~~l~sR~~~i~ 156 (316)
T PHA02544 95 ----------------V-SLTGGGKVIIIDEFDRLGLADAQRHLRSFME-AYSKNCSFIITANNKNGIIEPLRSRCRVID 156 (316)
T ss_pred ----------------h-cccCCCeEEEEECcccccCHHHHHHHHHHHH-hcCCCceEEEEcCChhhchHHHHhhceEEE
Confidence 0 01134557899999643 11 122222222 33456788888875432 11112234677
Q ss_pred ccCCChHhHHHHHHH
Q 002657 310 VACLSDKDAWELFCH 324 (896)
Q Consensus 310 l~~L~~~e~~~Lf~~ 324 (896)
+...+.++..+++..
T Consensus 157 ~~~p~~~~~~~il~~ 171 (316)
T PHA02544 157 FGVPTKEEQIEMMKQ 171 (316)
T ss_pred eCCCCHHHHHHHHHH
Confidence 777788777766554
No 154
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.71 E-value=0.00082 Score=77.07 Aligned_cols=189 Identities=13% Similarity=0.074 Sum_probs=105.0
Q ss_pred ccchHHHHHHHHHHhccCCCe-EEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHhcCCC
Q 002657 156 VVGLQSQLEQVWRCLVEEPAG-IVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDLRLENIQEIIGGKIGLM 234 (896)
Q Consensus 156 ~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 234 (896)
++|-+..++.+..++..+... .+.++|+.|+||||+|+.+++.... ...... ..+....+. +.|...-...
T Consensus 18 iiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c-~~~~~~---~pC~~C~~C----~~i~~~~~~d 89 (563)
T PRK06647 18 LEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNC-VNGPTP---MPCGECSSC----KSIDNDNSLD 89 (563)
T ss_pred ccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcc-ccCCCC---CCCccchHH----HHHHcCCCCC
Confidence 899999999999999886554 5779999999999999999987621 111000 000000011 1111100000
Q ss_pred C---ccccccCHHHHHHHH---HH-HhCCceEEEEEecCCCc--cccccccccCCCCCCCCcEEEEecCC-HHHHh-hhc
Q 002657 235 N---ESWKSKSLQEKSLDI---FK-ILGEKKFVLLLDDLWQR--VDLTKVGVPLPSPQSSASKVVFTTRS-EEICG-LME 303 (896)
Q Consensus 235 ~---~~~~~~~~~~~~~~l---~~-~l~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~~s~iivTtR~-~~v~~-~~~ 303 (896)
. +.......++..... .. -..+++-++|+|++... ..+..+...+. .......+|++|.. ..+.. ...
T Consensus 90 v~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LE-epp~~~vfI~~tte~~kL~~tI~S 168 (563)
T PRK06647 90 VIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIE-EPPPYIVFIFATTEVHKLPATIKS 168 (563)
T ss_pred eEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhc-cCCCCEEEEEecCChHHhHHHHHH
Confidence 0 000011122221111 11 11345568899999643 33455544443 33345556555543 33322 223
Q ss_pred cCcceeccCCChHhHHHHHHHHhcCcccCCCCChHHHHHHHHHHhCCCchHHH
Q 002657 304 AQKKFKVACLSDKDAWELFCHKVGEETLNNHPDIPELAQTVAKECGGMPLALI 356 (896)
Q Consensus 304 ~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~ 356 (896)
....++..+++.++..+.+.+.+...... --.+.+..|++.++|.+-.+.
T Consensus 169 Rc~~~~f~~l~~~el~~~L~~i~~~egi~---id~eAl~lLa~~s~GdlR~al 218 (563)
T PRK06647 169 RCQHFNFRLLSLEKIYNMLKKVCLEDQIK---YEDEALKWIAYKSTGSVRDAY 218 (563)
T ss_pred hceEEEecCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHH
Confidence 35578999999999988888876443311 124667889999999875443
No 155
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.71 E-value=0.00026 Score=71.39 Aligned_cols=185 Identities=16% Similarity=0.186 Sum_probs=112.7
Q ss_pred ccchHHHHHHHHHHhccCCCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEE-EEEeCCccCHHHHHHHHHHhcCCC
Q 002657 156 VVGLQSQLEQVWRCLVEEPAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVI-WVVVSKDLRLENIQEIIGGKIGLM 234 (896)
Q Consensus 156 ~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~-wv~~~~~~~~~~~~~~i~~~l~~~ 234 (896)
++|.+..+.-|.+.+......+...+|++|.|||+-|+.++... --.+-|.+.+ =.++|....+.-+-..
T Consensus 38 ~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L-~~~~~~~~rvl~lnaSderGisvvr~K-------- 108 (346)
T KOG0989|consen 38 LAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARAL-NCEQLFPCRVLELNASDERGISVVREK-------- 108 (346)
T ss_pred hcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHh-cCccccccchhhhcccccccccchhhh--------
Confidence 78999999999999888788899999999999999999998876 2234555433 3344443322211000
Q ss_pred CccccccCHHHHHHHHHHHh--CCce-EEEEEecCCCc--cccccccccCCCCCCCCcEEE-EecCCHHHH-hhhccCcc
Q 002657 235 NESWKSKSLQEKSLDIFKIL--GEKK-FVLLLDDLWQR--VDLTKVGVPLPSPQSSASKVV-FTTRSEEIC-GLMEAQKK 307 (896)
Q Consensus 235 ~~~~~~~~~~~~~~~l~~~l--~~kr-~LlVlDdv~~~--~~~~~l~~~~~~~~~~~s~ii-vTtR~~~v~-~~~~~~~~ 307 (896)
..+...+........ ..++ -++|||+++.. ..|..+...+. .....++.| ||+--..+. ...+....
T Consensus 109 -----ik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE-~~s~~trFiLIcnylsrii~pi~SRC~K 182 (346)
T KOG0989|consen 109 -----IKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTME-DFSRTTRFILICNYLSRIIRPLVSRCQK 182 (346)
T ss_pred -----hcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHh-ccccceEEEEEcCChhhCChHHHhhHHH
Confidence 011111111110000 1234 37789999754 56877766655 334445544 444333221 11223456
Q ss_pred eeccCCChHhHHHHHHHHhcCcccCCCCChHHHHHHHHHHhCCC-chHHHHH
Q 002657 308 FKVACLSDKDAWELFCHKVGEETLNNHPDIPELAQTVAKECGGM-PLALITI 358 (896)
Q Consensus 308 ~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~Gl-Plai~~~ 358 (896)
|..++|.+++..+-+...+..+....+ .+..+.|++.++|- --|+.++
T Consensus 183 frFk~L~d~~iv~rL~~Ia~~E~v~~d---~~al~~I~~~S~GdLR~Ait~L 231 (346)
T KOG0989|consen 183 FRFKKLKDEDIVDRLEKIASKEGVDID---DDALKLIAKISDGDLRRAITTL 231 (346)
T ss_pred hcCCCcchHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHcCCcHHHHHHHH
Confidence 899999999999999888876654333 45578899999884 4444443
No 156
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.70 E-value=0.00097 Score=75.74 Aligned_cols=159 Identities=18% Similarity=0.123 Sum_probs=95.5
Q ss_pred CeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHh
Q 002657 175 AGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDLRLENIQEIIGGKIGLMNESWKSKSLQEKSLDIFKIL 254 (896)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 254 (896)
...+.|+|..|+|||.|++.+++...+ ...--.++|++. .++..++...+.. .. ...+++.+
T Consensus 314 ~NpL~LyG~sGsGKTHLL~AIa~~a~~-~~~g~~V~Yita------eef~~el~~al~~-------~~----~~~f~~~y 375 (617)
T PRK14086 314 YNPLFIYGESGLGKTHLLHAIGHYARR-LYPGTRVRYVSS------EEFTNEFINSIRD-------GK----GDSFRRRY 375 (617)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHH-hCCCCeEEEeeH------HHHHHHHHHHHHh-------cc----HHHHHHHh
Confidence 345899999999999999999998621 111224556543 3444444443321 11 12233333
Q ss_pred CCceEEEEEecCCCc---cccc-cccccCCCCCCCCcEEEEecCCH---------HHHhhhccCcceeccCCChHhHHHH
Q 002657 255 GEKKFVLLLDDLWQR---VDLT-KVGVPLPSPQSSASKVVFTTRSE---------EICGLMEAQKKFKVACLSDKDAWEL 321 (896)
Q Consensus 255 ~~kr~LlVlDdv~~~---~~~~-~l~~~~~~~~~~~s~iivTtR~~---------~v~~~~~~~~~~~l~~L~~~e~~~L 321 (896)
++ .=+|||||+... ..|. .+...+......+..|||||+.. .+.+.+...-++++++.+.+.-.++
T Consensus 376 ~~-~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aI 454 (617)
T PRK14086 376 RE-MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAI 454 (617)
T ss_pred hc-CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHH
Confidence 32 247889999643 1122 22222211123356688888853 2344455677899999999999999
Q ss_pred HHHHhcCcccCCCCChHHHHHHHHHHhCCCchHH
Q 002657 322 FCHKVGEETLNNHPDIPELAQTVAKECGGMPLAL 355 (896)
Q Consensus 322 f~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai 355 (896)
+.+++....... -+++..-|++.+.+..-.+
T Consensus 455 L~kka~~r~l~l---~~eVi~yLa~r~~rnvR~L 485 (617)
T PRK14086 455 LRKKAVQEQLNA---PPEVLEFIASRISRNIREL 485 (617)
T ss_pred HHHHHHhcCCCC---CHHHHHHHHHhccCCHHHH
Confidence 999886544222 2567788888877665444
No 157
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.69 E-value=0.00011 Score=78.94 Aligned_cols=141 Identities=18% Similarity=0.168 Sum_probs=77.9
Q ss_pred HHhcCCCCCcEEEEEecCchhhhhhhccccccccceeeeeeecCCCCeeeeccccccCCcCeEeeccCCCCceEEecCCC
Q 002657 665 EELLGLNHLEVLSLTLRSPYALQSFLTSHKLQCCTQALFLQYFKDSTSLVVSSLANLKRLNVLRIADCEKLEELKIDYTG 744 (896)
Q Consensus 665 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~l~~~~~~ 744 (896)
..+..+++++.|+++.+....++. +..+++.|.+.+|.....++ ..+ +++|++|+|++|..+..+
T Consensus 46 ~r~~~~~~l~~L~Is~c~L~sLP~------LP~sLtsL~Lsnc~nLtsLP-~~L--P~nLe~L~Ls~Cs~L~sL------ 110 (426)
T PRK15386 46 PQIEEARASGRLYIKDCDIESLPV------LPNELTEITIENCNNLTTLP-GSI--PEGLEKLTVCHCPEISGL------ 110 (426)
T ss_pred HHHHHhcCCCEEEeCCCCCcccCC------CCCCCcEEEccCCCCcccCC-chh--hhhhhheEccCccccccc------
Confidence 345566888888888776555542 23467777777776654433 222 257778888777655433
Q ss_pred ccccccCCCccEEEeccCCCCCCCccccCCCCCCEEeEecCcccchhcccCcccCCCCCcC-ccccEeeccCCCcccccC
Q 002657 745 EIQHFGFRSLCKVEIARCQKLKDLTFLVFAPNLESIEVKSCLALEEIVSDVPEAMGNLNLF-AKLQYLELLGLPNLKSIY 823 (896)
Q Consensus 745 ~~~~~~~~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~-~~L~~L~l~~~~~l~~i~ 823 (896)
.++|+.|++..+ .+..++. -.++|+.|.+.+++..... .....+ ++|++|.+.+|..+. +|
T Consensus 111 ------P~sLe~L~L~~n-~~~~L~~--LPssLk~L~I~~~n~~~~~--------~lp~~LPsSLk~L~Is~c~~i~-LP 172 (426)
T PRK15386 111 ------PESVRSLEIKGS-ATDSIKN--VPNGLTSLSINSYNPENQA--------RIDNLISPSLKTLSLTGCSNII-LP 172 (426)
T ss_pred ------ccccceEEeCCC-CCccccc--CcchHhheecccccccccc--------ccccccCCcccEEEecCCCccc-Cc
Confidence 335666666532 2222211 1145777776543211111 000112 578888888877553 22
Q ss_pred CCCCCCCCccEEeEcCC
Q 002657 824 WKPLSFPRLKEMTIITC 840 (896)
Q Consensus 824 ~~~~~~~~L~~L~i~~C 840 (896)
.. --++|+.|.++++
T Consensus 173 ~~--LP~SLk~L~ls~n 187 (426)
T PRK15386 173 EK--LPESLQSITLHIE 187 (426)
T ss_pred cc--ccccCcEEEeccc
Confidence 11 1247888888664
No 158
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.67 E-value=0.00017 Score=86.41 Aligned_cols=155 Identities=17% Similarity=0.230 Sum_probs=90.9
Q ss_pred ccchHHHHHHHHHHhccCCCeEEEEEcCCCchHHHHHHHHHhhhccCC--CCC-CeEEEEEeCCccCHHHHHHHHHHhcC
Q 002657 156 VVGLQSQLEQVWRCLVEEPAGIVGLYGMGGVGKTTLLTHINNKFLQVP--NDF-DCVIWVVVSKDLRLENIQEIIGGKIG 232 (896)
Q Consensus 156 ~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--~~f-~~~~wv~~~~~~~~~~~~~~i~~~l~ 232 (896)
++||+++++++++.|......-+.++|++|+|||++|+.+++...... ..+ +..+|. + +...+. ....
T Consensus 184 ~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~-~----~~~~l~----a~~~ 254 (731)
T TIGR02639 184 LIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS-L----DMGSLL----AGTK 254 (731)
T ss_pred ccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE-e----cHHHHh----hhcc
Confidence 899999999999999876666678999999999999999998862111 111 333442 1 111111 1000
Q ss_pred CCCccccccCHHHHHHHHHHHh-CCceEEEEEecCCCcc----------ccccccccCCCCCCCCcEEEEecCCHHHH--
Q 002657 233 LMNESWKSKSLQEKSLDIFKIL-GEKKFVLLLDDLWQRV----------DLTKVGVPLPSPQSSASKVVFTTRSEEIC-- 299 (896)
Q Consensus 233 ~~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~~----------~~~~l~~~~~~~~~~~s~iivTtR~~~v~-- 299 (896)
.....++....+.+.+ +.++.+|++|+++... +...+..+.. . ...-++|-+|..++..
T Consensus 255 ------~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l-~-~g~i~~IgaTt~~e~~~~ 326 (731)
T TIGR02639 255 ------YRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPAL-S-SGKLRCIGSTTYEEYKNH 326 (731)
T ss_pred ------ccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHH-h-CCCeEEEEecCHHHHHHH
Confidence 1122333444444444 3468899999996321 1112222211 1 2234566555543321
Q ss_pred -----hhhccCcceeccCCChHhHHHHHHHHhc
Q 002657 300 -----GLMEAQKKFKVACLSDKDAWELFCHKVG 327 (896)
Q Consensus 300 -----~~~~~~~~~~l~~L~~~e~~~Lf~~~~~ 327 (896)
........+.+++++.++..+++.....
T Consensus 327 ~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~~ 359 (731)
T TIGR02639 327 FEKDRALSRRFQKIDVGEPSIEETVKILKGLKE 359 (731)
T ss_pred hhhhHHHHHhCceEEeCCCCHHHHHHHHHHHHH
Confidence 1112245789999999999999987653
No 159
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.65 E-value=3.6e-05 Score=89.95 Aligned_cols=129 Identities=21% Similarity=0.267 Sum_probs=85.5
Q ss_pred cceEEEeecccccc--cc-c-CCCCCCccEEecccccccccc-hhhhccCCCCcEEEccCCcccccccccccCCCCCCEE
Q 002657 515 NVSRLSLMQNRIKN--LS-E-IPKCPHLLTLFLNSNELKIIT-NDFFQFMPSLKVLSLSRNRRLTNLQLGISKLVSLQHL 589 (896)
Q Consensus 515 ~lr~L~l~~~~~~~--l~-~-~~~~~~L~~L~l~~n~l~~i~-~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L 589 (896)
++++|++++...-. .+ . ...+|.|++|.+.+-.+..-. .....++++|+.||+|++ +++.+ ..+++|++|+.|
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGT-NISNL-SGISRLKNLQVL 200 (699)
T ss_pred hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCC-CccCc-HHHhccccHHHH
Confidence 78888887754321 11 1 256889999998886443222 233568899999999999 88888 588999999999
Q ss_pred eccCCCccccc--hhhhcCCCCCEeeccccccccCC--cHHH---HhccccccEEEeeccCCC
Q 002657 590 DLSLTNIEKLS--GELKALVNLKCLNLEYTWSLVTI--PQQL---IASFLRLHVLRMFGVGDD 645 (896)
Q Consensus 590 ~Ls~~~i~~lp--~~l~~L~~L~~L~L~~~~~l~~l--p~~~---i~~l~~L~~L~l~~~~~~ 645 (896)
.+++=.+..-+ ..+.+|++|++||+|.......- .... -..|++||.|+.+++...
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 88876665432 34678899999999877432221 1111 124677777777754433
No 160
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.64 E-value=1.1e-05 Score=70.91 Aligned_cols=87 Identities=28% Similarity=0.383 Sum_probs=78.3
Q ss_pred cceEEEeeccccccccc--CCCCCCccEEecccccccccchhhhccCCCCcEEEccCCcccccccccccCCCCCCEEecc
Q 002657 515 NVSRLSLMQNRIKNLSE--IPKCPHLLTLFLNSNELKIITNDFFQFMPSLKVLSLSRNRRLTNLQLGISKLVSLQHLDLS 592 (896)
Q Consensus 515 ~lr~L~l~~~~~~~l~~--~~~~~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~Ls 592 (896)
.+..+++++|.+..+|. ..+++.+.+|++.+|.++.+|.. +..|+.||.|+++.| .+...|.-|..|.+|-+|+..
T Consensus 54 el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE-~Aam~aLr~lNl~~N-~l~~~p~vi~~L~~l~~Lds~ 131 (177)
T KOG4579|consen 54 ELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEE-LAAMPALRSLNLRFN-PLNAEPRVIAPLIKLDMLDSP 131 (177)
T ss_pred eEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHH-HhhhHHhhhcccccC-ccccchHHHHHHHhHHHhcCC
Confidence 57778999999998865 36677999999999999999998 899999999999999 899999999999999999999
Q ss_pred CCCccccchhh
Q 002657 593 LTNIEKLSGEL 603 (896)
Q Consensus 593 ~~~i~~lp~~l 603 (896)
+|.+.++|-.+
T Consensus 132 ~na~~eid~dl 142 (177)
T KOG4579|consen 132 ENARAEIDVDL 142 (177)
T ss_pred CCccccCcHHH
Confidence 99999888663
No 161
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.63 E-value=1.6e-05 Score=92.79 Aligned_cols=136 Identities=21% Similarity=0.191 Sum_probs=83.3
Q ss_pred CCCccEEeccccc--ccccchhhhccCCCCcEEEccCCcccc--cccccccCCCCCCEEeccCCCccccchhhhcCCCCC
Q 002657 535 CPHLLTLFLNSNE--LKIITNDFFQFMPSLKVLSLSRNRRLT--NLQLGISKLVSLQHLDLSLTNIEKLSGELKALVNLK 610 (896)
Q Consensus 535 ~~~L~~L~l~~n~--l~~i~~~~~~~l~~L~~L~Ls~~~~i~--~lp~~i~~L~~L~~L~Ls~~~i~~lp~~l~~L~~L~ 610 (896)
-.+|+.|++++.. ..+.+...-.-+|+|+.|.+++- .+. ++-.-..++++|..||+|+|+++.+ .++++|+||+
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~-~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq 198 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGR-QFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQ 198 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCc-eecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHH
Confidence 3578888888762 22333444456788888888775 332 2334456788888888888888887 5788888888
Q ss_pred EeeccccccccCCc-HHHHhccccccEEEeeccCCCcccccccccccccCccccHHHhcCCCCCcEEEEEecC
Q 002657 611 CLNLEYTWSLVTIP-QQLIASFLRLHVLRMFGVGDDAFEVASEDSVLFDGGEFLVEELLGLNHLEVLSLTLRS 682 (896)
Q Consensus 611 ~L~L~~~~~l~~lp-~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 682 (896)
.|.+.+- .+..-+ -..+-+|++|+.|+++......... --....+.-..|++|+.|+.++..
T Consensus 199 ~L~mrnL-e~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~---------ii~qYlec~~~LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 199 VLSMRNL-EFESYQDLIDLFNLKKLRVLDISRDKNNDDTK---------IIEQYLECGMVLPELRFLDCSGTD 261 (699)
T ss_pred HHhccCC-CCCchhhHHHHhcccCCCeeeccccccccchH---------HHHHHHHhcccCccccEEecCCcc
Confidence 8877655 222211 1126678888888887654442110 001122333456778888777554
No 162
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.62 E-value=0.00065 Score=80.39 Aligned_cols=154 Identities=20% Similarity=0.293 Sum_probs=91.3
Q ss_pred ccchHHHHHHHHHHhccCCCeEEEEEcCCCchHHHHHHHHHhhhccCCCC---CCeEEEEEeCCccCHHHHHHHHHHhcC
Q 002657 156 VVGLQSQLEQVWRCLVEEPAGIVGLYGMGGVGKTTLLTHINNKFLQVPND---FDCVIWVVVSKDLRLENIQEIIGGKIG 232 (896)
Q Consensus 156 ~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~---f~~~~wv~~~~~~~~~~~~~~i~~~l~ 232 (896)
++||+++++++++.|......-+.++|++|+|||++|+.+++........ .++.+|.. +...+ .. +
T Consensus 188 liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~~l----la--G 256 (758)
T PRK11034 188 LIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIGSL----LA--G 256 (758)
T ss_pred CcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHHHH----hc--c
Confidence 89999999999999987655556789999999999999999875221111 23444421 11111 11 0
Q ss_pred CCCccccccCHHHHHHHHHHHh-CCceEEEEEecCCCc----------cccccccccCCCCCCCCcEEEEecCCHHHHh-
Q 002657 233 LMNESWKSKSLQEKSLDIFKIL-GEKKFVLLLDDLWQR----------VDLTKVGVPLPSPQSSASKVVFTTRSEEICG- 300 (896)
Q Consensus 233 ~~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~----------~~~~~l~~~~~~~~~~~s~iivTtR~~~v~~- 300 (896)
.. ...+.+.....+.+.+ +.++.+|++|++... .+...+..++. ....-+||-+|..++...
T Consensus 257 ~~----~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L--~~g~i~vIgATt~~E~~~~ 330 (758)
T PRK11034 257 TK----YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLL--SSGKIRVIGSTTYQEFSNI 330 (758)
T ss_pred cc----hhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHH--hCCCeEEEecCChHHHHHH
Confidence 00 1122333333343333 356789999999632 11222222322 223456666666554321
Q ss_pred ------hhccCcceeccCCChHhHHHHHHHHh
Q 002657 301 ------LMEAQKKFKVACLSDKDAWELFCHKV 326 (896)
Q Consensus 301 ------~~~~~~~~~l~~L~~~e~~~Lf~~~~ 326 (896)
.......+.++.++.+++.+++....
T Consensus 331 ~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 331 FEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred hhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 11233579999999999999998754
No 163
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.61 E-value=0.00085 Score=77.71 Aligned_cols=192 Identities=11% Similarity=0.112 Sum_probs=103.5
Q ss_pred ccchHHHHHHHHHHhccCCCe-EEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHhcCCC
Q 002657 156 VVGLQSQLEQVWRCLVEEPAG-IVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDLRLENIQEIIGGKIGLM 234 (896)
Q Consensus 156 ~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 234 (896)
++|.+..++.|.+++..+... .+.++|+.|+||||+|+.+++.... ....+. ........-..|...-...
T Consensus 18 iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c-~~~~~~-------~~c~~c~~c~~i~~g~~~d 89 (576)
T PRK14965 18 LTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNC-EQGLTA-------EPCNVCPPCVEITEGRSVD 89 (576)
T ss_pred ccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcC-CCCCCC-------CCCCccHHHHHHhcCCCCC
Confidence 899999999999999887654 5678999999999999999887621 111000 0000000001110000000
Q ss_pred C---ccccccCHHHHHHHHHHHh-----CCceEEEEEecCCCc--cccccccccCCCCCCCCcEEEE-ecCCHHHH-hhh
Q 002657 235 N---ESWKSKSLQEKSLDIFKIL-----GEKKFVLLLDDLWQR--VDLTKVGVPLPSPQSSASKVVF-TTRSEEIC-GLM 302 (896)
Q Consensus 235 ~---~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~~s~iiv-TtR~~~v~-~~~ 302 (896)
. +.......++ +..+.+.+ .+++-++|+|+++.. .....+...+. .......+|+ ||....+. ...
T Consensus 90 ~~eid~~s~~~v~~-ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LE-epp~~~~fIl~t~~~~kl~~tI~ 167 (576)
T PRK14965 90 VFEIDGASNTGVDD-IRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLE-EPPPHVKFIFATTEPHKVPITIL 167 (576)
T ss_pred eeeeeccCccCHHH-HHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHH-cCCCCeEEEEEeCChhhhhHHHH
Confidence 0 0000011111 11122221 234557899999643 23444443333 2233455554 55444443 223
Q ss_pred ccCcceeccCCChHhHHHHHHHHhcCcccCCCCChHHHHHHHHHHhCCCc-hHHHHHHH
Q 002657 303 EAQKKFKVACLSDKDAWELFCHKVGEETLNNHPDIPELAQTVAKECGGMP-LALITIGR 360 (896)
Q Consensus 303 ~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~GlP-lai~~~~~ 360 (896)
+....+++.+++.++....+...+......- -.+....|++.++|.. .|+..+-.
T Consensus 168 SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i---~~~al~~la~~a~G~lr~al~~Ldq 223 (576)
T PRK14965 168 SRCQRFDFRRIPLQKIVDRLRYIADQEGISI---SDAALALVARKGDGSMRDSLSTLDQ 223 (576)
T ss_pred HhhhhhhcCCCCHHHHHHHHHHHHHHhCCCC---CHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 3456789999999998888877664433111 1455788899998865 44444433
No 164
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.59 E-value=0.0017 Score=64.51 Aligned_cols=44 Identities=30% Similarity=0.498 Sum_probs=36.8
Q ss_pred ccchHHHHHHHHHHhc----cCCCeEEEEEcCCCchHHHHHHHHHhhh
Q 002657 156 VVGLQSQLEQVWRCLV----EEPAGIVGLYGMGGVGKTTLLTHINNKF 199 (896)
Q Consensus 156 ~vGr~~~~~~l~~~L~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (896)
++|.+.+++.|++-.. .....-+.+||..|.|||++++++.+.+
T Consensus 29 L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y 76 (249)
T PF05673_consen 29 LIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEY 76 (249)
T ss_pred hcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHH
Confidence 8999999988876543 3456677889999999999999999887
No 165
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.56 E-value=0.00056 Score=82.95 Aligned_cols=152 Identities=18% Similarity=0.180 Sum_probs=88.3
Q ss_pred ccchHHHHHHHHHHhccCCCeEEEEEcCCCchHHHHHHHHHhhhccCCCC----CCeE-EEEEeCCccCHHHHHHHHHHh
Q 002657 156 VVGLQSQLEQVWRCLVEEPAGIVGLYGMGGVGKTTLLTHINNKFLQVPND----FDCV-IWVVVSKDLRLENIQEIIGGK 230 (896)
Q Consensus 156 ~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~----f~~~-~wv~~~~~~~~~~~~~~i~~~ 230 (896)
++||+.+++++++.|......-+.++|++|+|||++|+.++..... ... .... +++.++. +.. .
T Consensus 180 vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~-~~vp~~l~~~~~~~l~l~~------l~a----g 248 (857)
T PRK10865 180 VIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIIN-GEVPEGLKGRRVLALDMGA------LVA----G 248 (857)
T ss_pred CCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhhc-CCCchhhCCCEEEEEehhh------hhh----c
Confidence 8999999999999998876667779999999999999999987621 110 1222 2222221 110 0
Q ss_pred cCCCCccccccCHHHHHHHHHHHh--CCceEEEEEecCCCcc---------ccccccccCCCCCCCCcEEEEecCCHHHH
Q 002657 231 IGLMNESWKSKSLQEKSLDIFKIL--GEKKFVLLLDDLWQRV---------DLTKVGVPLPSPQSSASKVVFTTRSEEIC 299 (896)
Q Consensus 231 l~~~~~~~~~~~~~~~~~~l~~~l--~~kr~LlVlDdv~~~~---------~~~~l~~~~~~~~~~~s~iivTtR~~~v~ 299 (896)
. . .....+.....+.+.+ .+++.+|++|++.... +...+..+.. ....-++|-||...+..
T Consensus 249 ~-----~-~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l--~~g~l~~IgaTt~~e~r 320 (857)
T PRK10865 249 A-----K-YRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPAL--ARGELHCVGATTLDEYR 320 (857)
T ss_pred c-----c-hhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchh--hcCCCeEEEcCCCHHHH
Confidence 0 0 1112233333333322 2578999999996421 1122222222 22345677666665532
Q ss_pred hh-------hccCcceeccCCChHhHHHHHHHHh
Q 002657 300 GL-------MEAQKKFKVACLSDKDAWELFCHKV 326 (896)
Q Consensus 300 ~~-------~~~~~~~~l~~L~~~e~~~Lf~~~~ 326 (896)
.. ......+.+...+.++..+++....
T Consensus 321 ~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 321 QYIEKDAALERRFQKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred HHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHh
Confidence 11 1223356777778899988887654
No 166
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.55 E-value=0.0011 Score=72.73 Aligned_cols=170 Identities=16% Similarity=0.217 Sum_probs=95.0
Q ss_pred ccchHHHHHHHHHHhcc-------------CCCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHH
Q 002657 156 VVGLQSQLEQVWRCLVE-------------EPAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDLRLEN 222 (896)
Q Consensus 156 ~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~ 222 (896)
+.|.+..+++|.+.+.- ...+-|.++|++|+|||++|+.+++.. ...| +.+.. ..
T Consensus 147 igGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l---~~~f-----i~i~~----s~ 214 (398)
T PTZ00454 147 IGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHT---TATF-----IRVVG----SE 214 (398)
T ss_pred cCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc---CCCE-----EEEeh----HH
Confidence 67988888888776531 245678899999999999999999876 2232 22211 11
Q ss_pred HHHHHHHhcCCCCccccccCHHHHHHHHHHHhCCceEEEEEecCCCcc------------c----cccccccCCC-CCCC
Q 002657 223 IQEIIGGKIGLMNESWKSKSLQEKSLDIFKILGEKKFVLLLDDLWQRV------------D----LTKVGVPLPS-PQSS 285 (896)
Q Consensus 223 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~------------~----~~~l~~~~~~-~~~~ 285 (896)
+... .++ .........+.......+.+|++|+++... . +..+...+.. ....
T Consensus 215 l~~k---~~g--------e~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~ 283 (398)
T PTZ00454 215 FVQK---YLG--------EGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTT 283 (398)
T ss_pred HHHH---hcc--------hhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCC
Confidence 1111 111 111122222233335678999999985310 0 1111111110 1234
Q ss_pred CcEEEEecCCHHHHh--hh---ccCcceeccCCChHhHHHHHHHHhcCcccCCCCChHHHHHHHHHHhCCCc
Q 002657 286 ASKVVFTTRSEEICG--LM---EAQKKFKVACLSDKDAWELFCHKVGEETLNNHPDIPELAQTVAKECGGMP 352 (896)
Q Consensus 286 ~s~iivTtR~~~v~~--~~---~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~GlP 352 (896)
+..||+||...+... .. .-+..+.+...+.++-.++|...........+-+ ...+++.+.|.-
T Consensus 284 ~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd----~~~la~~t~g~s 351 (398)
T PTZ00454 284 NVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVD----LEDFVSRPEKIS 351 (398)
T ss_pred CEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccC----HHHHHHHcCCCC
Confidence 567888887654321 11 2245688888888888888887765443222223 345566666653
No 167
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.54 E-value=0.00068 Score=82.59 Aligned_cols=153 Identities=16% Similarity=0.201 Sum_probs=89.3
Q ss_pred ccchHHHHHHHHHHhccCCCeEEEEEcCCCchHHHHHHHHHhhhccCCCC----CCeEEEEEeCCccCHHHHHHHHHHhc
Q 002657 156 VVGLQSQLEQVWRCLVEEPAGIVGLYGMGGVGKTTLLTHINNKFLQVPND----FDCVIWVVVSKDLRLENIQEIIGGKI 231 (896)
Q Consensus 156 ~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~----f~~~~wv~~~~~~~~~~~~~~i~~~l 231 (896)
++||+++++++++.|......-+.++|++|+|||++|+.++..... ... ....+|.. +...+. .
T Consensus 175 ~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~-~~~p~~l~~~~~~~l-----~~~~l~----a-- 242 (852)
T TIGR03346 175 VIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVN-GDVPESLKNKRLLAL-----DMGALI----A-- 242 (852)
T ss_pred CCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhc-cCCchhhcCCeEEEe-----eHHHHh----h--
Confidence 8999999999999998766666778999999999999999887621 111 12233321 111111 0
Q ss_pred CCCCccccccCHHHHHHHHHHHhC--CceEEEEEecCCCcc---------ccccccccCCCCCCCCcEEEEecCCHHHHh
Q 002657 232 GLMNESWKSKSLQEKSLDIFKILG--EKKFVLLLDDLWQRV---------DLTKVGVPLPSPQSSASKVVFTTRSEEICG 300 (896)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~---------~~~~l~~~~~~~~~~~s~iivTtR~~~v~~ 300 (896)
+.. .....+.....+.+.+. +++.+|++|++.... +...+..+.. ....-++|.+|...+...
T Consensus 243 ~~~----~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l--~~g~i~~IgaTt~~e~r~ 316 (852)
T TIGR03346 243 GAK----YRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPAL--ARGELHCIGATTLDEYRK 316 (852)
T ss_pred cch----hhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhh--hcCceEEEEeCcHHHHHH
Confidence 000 01122333333333332 468999999996321 1112222222 122346666666554421
Q ss_pred -------hhccCcceeccCCChHhHHHHHHHHh
Q 002657 301 -------LMEAQKKFKVACLSDKDAWELFCHKV 326 (896)
Q Consensus 301 -------~~~~~~~~~l~~L~~~e~~~Lf~~~~ 326 (896)
.......+.+...+.++..+++....
T Consensus 317 ~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 317 YIEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred HhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 11233568899999999999887664
No 168
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.54 E-value=0.0013 Score=70.34 Aligned_cols=94 Identities=11% Similarity=0.126 Sum_probs=58.7
Q ss_pred ceEEEEEecCCCc--cccccccccCCCCCCCCcEEEEecCCHH-HH-hhhccCcceeccCCChHhHHHHHHHHhcCcccC
Q 002657 257 KKFVLLLDDLWQR--VDLTKVGVPLPSPQSSASKVVFTTRSEE-IC-GLMEAQKKFKVACLSDKDAWELFCHKVGEETLN 332 (896)
Q Consensus 257 kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~~s~iivTtR~~~-v~-~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~ 332 (896)
++-++|+|+++.. .....+...+. ....++.+|+||.+.+ +. ...+....+.+.+++.+++.+.+.+.....
T Consensus 106 ~~kv~iI~~a~~m~~~aaNaLLK~LE-EPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~~~~--- 181 (328)
T PRK05707 106 GRKVVLIEPAEAMNRNAANALLKSLE-EPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQALPES--- 181 (328)
T ss_pred CCeEEEECChhhCCHHHHHHHHHHHh-CCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhcccC---
Confidence 3445577999743 33444444443 2234566667666653 32 223445679999999999999887754211
Q ss_pred CCCChHHHHHHHHHHhCCCchHHHHH
Q 002657 333 NHPDIPELAQTVAKECGGMPLALITI 358 (896)
Q Consensus 333 ~~~~~~~~~~~i~~~~~GlPlai~~~ 358 (896)
..+.+..++..++|.|..+..+
T Consensus 182 ----~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 182 ----DERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred ----ChHHHHHHHHHcCCCHHHHHHH
Confidence 1334567889999999866544
No 169
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.53 E-value=0.0048 Score=61.12 Aligned_cols=183 Identities=16% Similarity=0.195 Sum_probs=105.4
Q ss_pred CCCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeC-CccCHHHHHHHHHHhcCCCCccccccCHHHHHHHHH
Q 002657 173 EPAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVS-KDLRLENIQEIIGGKIGLMNESWKSKSLQEKSLDIF 251 (896)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~-~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 251 (896)
++.+++.|+|.-|.|||.+++.+..... -+.++-|.+. +..+...+...|...+.......-....++....+.
T Consensus 49 d~qg~~~vtGevGsGKTv~~Ral~~s~~-----~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~ 123 (269)
T COG3267 49 DGQGILAVTGEVGSGKTVLRRALLASLN-----EDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELA 123 (269)
T ss_pred cCCceEEEEecCCCchhHHHHHHHHhcC-----CCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHH
Confidence 4667999999999999999996655541 1222224433 445677888888888876321111112223333344
Q ss_pred HHh-CCce-EEEEEecCCCc--ccccccccc--CCCCCCCCcEEEEecCCH-------HHHhhh-ccCcc-eeccCCChH
Q 002657 252 KIL-GEKK-FVLLLDDLWQR--VDLTKVGVP--LPSPQSSASKVVFTTRSE-------EICGLM-EAQKK-FKVACLSDK 316 (896)
Q Consensus 252 ~~l-~~kr-~LlVlDdv~~~--~~~~~l~~~--~~~~~~~~s~iivTtR~~-------~v~~~~-~~~~~-~~l~~L~~~ 316 (896)
... +++| ..+++||..+. ...+.+... +.......-+|+..-..+ .+.+.. ..... |.+.|++.+
T Consensus 124 al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~ 203 (269)
T COG3267 124 ALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEA 203 (269)
T ss_pred HHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChH
Confidence 433 4666 89999998642 222222111 110111112233322211 111111 11223 899999999
Q ss_pred hHHHHHHHHhcCcccCCCCChHHHHHHHHHHhCCCchHHHHHHH
Q 002657 317 DAWELFCHKVGEETLNNHPDIPELAQTVAKECGGMPLALITIGR 360 (896)
Q Consensus 317 e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~~~ 360 (896)
+...++..+........+---.+....|.....|.|.+|..++.
T Consensus 204 ~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 204 ETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred HHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHH
Confidence 99999988876654222222356678899999999999987763
No 170
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.52 E-value=0.0029 Score=73.00 Aligned_cols=187 Identities=16% Similarity=0.098 Sum_probs=101.7
Q ss_pred ccchHHHHHHHHHHhccCCC-eEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHhcCCC
Q 002657 156 VVGLQSQLEQVWRCLVEEPA-GIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDLRLENIQEIIGGKIGLM 234 (896)
Q Consensus 156 ~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 234 (896)
++|.+...+.+.+++..+.. ..+.++|+.|+||||+|+.+++.... ...-+. .+.+....-+.|.......
T Consensus 18 viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c-~~~~~~-------~pC~~C~~C~~i~~g~~~d 89 (559)
T PRK05563 18 VVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNC-LNPPDG-------EPCNECEICKAITNGSLMD 89 (559)
T ss_pred ccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcC-CCCCCC-------CCCCccHHHHHHhcCCCCC
Confidence 89999999999999987654 45677999999999999999877521 110000 0001111111111110000
Q ss_pred Cccc---cccCHHHHHHHHHHH-----hCCceEEEEEecCCCc--cccccccccCCCCCCCCcEEEE-ecCCHHHHh-hh
Q 002657 235 NESW---KSKSLQEKSLDIFKI-----LGEKKFVLLLDDLWQR--VDLTKVGVPLPSPQSSASKVVF-TTRSEEICG-LM 302 (896)
Q Consensus 235 ~~~~---~~~~~~~~~~~l~~~-----l~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~~s~iiv-TtR~~~v~~-~~ 302 (896)
.-.. .....++ +..+.+. ..+++-++|+|++... ..+..+...+. .......+|+ ||....+.. ..
T Consensus 90 v~eidaas~~~vd~-ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLE-epp~~~ifIlatt~~~ki~~tI~ 167 (559)
T PRK05563 90 VIEIDAASNNGVDE-IRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLE-EPPAHVIFILATTEPHKIPATIL 167 (559)
T ss_pred eEEeeccccCCHHH-HHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhc-CCCCCeEEEEEeCChhhCcHHHH
Confidence 0000 0011111 1112222 1345668899999643 33444444333 2223444444 444433322 22
Q ss_pred ccCcceeccCCChHhHHHHHHHHhcCcccCCCCChHHHHHHHHHHhCCCchHH
Q 002657 303 EAQKKFKVACLSDKDAWELFCHKVGEETLNNHPDIPELAQTVAKECGGMPLAL 355 (896)
Q Consensus 303 ~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai 355 (896)
+....++..+++.++....+...+....... -.+.+..|++.++|.+..+
T Consensus 168 SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i---~~~al~~ia~~s~G~~R~a 217 (559)
T PRK05563 168 SRCQRFDFKRISVEDIVERLKYILDKEGIEY---EDEALRLIARAAEGGMRDA 217 (559)
T ss_pred hHheEEecCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHH
Confidence 3346788999999999888888775433111 1456778888998877544
No 171
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.51 E-value=0.0023 Score=66.19 Aligned_cols=204 Identities=19% Similarity=0.304 Sum_probs=115.4
Q ss_pred cccCCCCCc--ccchHHHHHHHHHHhcc-------------CCCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEE
Q 002657 147 ADERPTEPI--VVGLQSQLEQVWRCLVE-------------EPAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIW 211 (896)
Q Consensus 147 ~~~~~~~~~--~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~w 211 (896)
+++.|...+ +=|-++.+++|.+.+.- +..+-|.++|++|.|||-||++|+++- .. .|
T Consensus 142 v~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T---~A-----tF 213 (406)
T COG1222 142 VEEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQT---DA-----TF 213 (406)
T ss_pred eccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhcc---Cc-----eE
Confidence 344554442 34788888888887642 356778899999999999999999975 23 34
Q ss_pred EEeCCccCHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHhC-CceEEEEEecCCCc-------------c---cccc
Q 002657 212 VVVSKDLRLENIQEIIGGKIGLMNESWKSKSLQEKSLDIFKILG-EKKFVLLLDDLWQR-------------V---DLTK 274 (896)
Q Consensus 212 v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~-~kr~LlVlDdv~~~-------------~---~~~~ 274 (896)
+.|... ++.++. +| .-..+...+.+.-+ ..+.+|.+|.++.. + ..-+
T Consensus 214 IrvvgS----ElVqKY---iG---------EGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmle 277 (406)
T COG1222 214 IRVVGS----ELVQKY---IG---------EGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLE 277 (406)
T ss_pred EEeccH----HHHHHH---hc---------cchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHH
Confidence 444332 121111 11 11234455555554 46899999998531 0 0112
Q ss_pred ccccCCC-CCCCCcEEEEecCCHHHHh--hhc---cCcceeccCCChHhHHHHHHHHhcCcccCCCCChHHHHHHHHHHh
Q 002657 275 VGVPLPS-PQSSASKVVFTTRSEEICG--LME---AQKKFKVACLSDKDAWELFCHKVGEETLNNHPDIPELAQTVAKEC 348 (896)
Q Consensus 275 l~~~~~~-~~~~~s~iivTtR~~~v~~--~~~---~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~ 348 (896)
+...+-. +....-|||..|...++.. .+. -+..|++..-+.+.=.++|+-++.......+-++ +.+++.|
T Consensus 278 LL~qlDGFD~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~----e~la~~~ 353 (406)
T COG1222 278 LLNQLDGFDPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDL----ELLARLT 353 (406)
T ss_pred HHHhccCCCCCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCH----HHHHHhc
Confidence 2222210 2345679999888766521 112 2456777744555555677777776664444455 4555666
Q ss_pred CCCc----hHHHHHHHhhc--CCC---CHHHHHHHHHHH
Q 002657 349 GGMP----LALITIGRAMS--CKR---TPQEWRHAIQVL 378 (896)
Q Consensus 349 ~GlP----lai~~~~~~l~--~~~---~~~~w~~~l~~l 378 (896)
.|.- -||.+=|++++ ..+ +.+.+.++.++.
T Consensus 354 ~g~sGAdlkaictEAGm~AiR~~R~~Vt~~DF~~Av~KV 392 (406)
T COG1222 354 EGFSGADLKAICTEAGMFAIRERRDEVTMEDFLKAVEKV 392 (406)
T ss_pred CCCchHHHHHHHHHHhHHHHHhccCeecHHHHHHHHHHH
Confidence 6553 45555555543 222 445555554443
No 172
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.51 E-value=0.0029 Score=67.31 Aligned_cols=194 Identities=14% Similarity=0.145 Sum_probs=107.6
Q ss_pred ccchHHHHHHHHHHhccCCC-eEEEEEcCCCchHHHHHHHHHhhhccCC------------CCCCeEEEEEeCCccCHHH
Q 002657 156 VVGLQSQLEQVWRCLVEEPA-GIVGLYGMGGVGKTTLLTHINNKFLQVP------------NDFDCVIWVVVSKDLRLEN 222 (896)
Q Consensus 156 ~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~------------~~f~~~~wv~~~~~~~~~~ 222 (896)
++|.+..++.+.+.+..+.. ....++|+.|+||+++|..+++...... ..+.-..|+.-.-...-..
T Consensus 6 iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~g~~ 85 (314)
T PRK07399 6 LIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQGKL 85 (314)
T ss_pred hCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccccccc
Confidence 79999999999999988764 7888999999999999999887752110 1112234443210000000
Q ss_pred HHHHHHHhcCCCCccccccCHHHHHHHHHHHhC-----CceEEEEEecCCCc--cccccccccCCCCCCCCcEEEEecCC
Q 002657 223 IQEIIGGKIGLMNESWKSKSLQEKSLDIFKILG-----EKKFVLLLDDLWQR--VDLTKVGVPLPSPQSSASKVVFTTRS 295 (896)
Q Consensus 223 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~-----~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~~s~iivTtR~ 295 (896)
+-..-++..+........-..++ +..+.+.+. +++-++|+|+++.. .....+...+. .-.+..-|++|++.
T Consensus 86 ~~~~~~~~~~~~~~~~~~I~id~-ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LE-EPp~~~fILi~~~~ 163 (314)
T PRK07399 86 ITASEAEEAGLKRKAPPQIRLEQ-IREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLE-EPGNGTLILIAPSP 163 (314)
T ss_pred cchhhhhhccccccccccCcHHH-HHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHh-CCCCCeEEEEECCh
Confidence 00111111111000000111122 233444443 45668999999643 23344443343 22233344445444
Q ss_pred HHHH-hhhccCcceeccCCChHhHHHHHHHHhcCcccCCCCChHHHHHHHHHHhCCCchHHHH
Q 002657 296 EEIC-GLMEAQKKFKVACLSDKDAWELFCHKVGEETLNNHPDIPELAQTVAKECGGMPLALIT 357 (896)
Q Consensus 296 ~~v~-~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~ 357 (896)
..+. ...+....+++.++++++..+.+.+...... .......++..++|.|..+..
T Consensus 164 ~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~------~~~~~~~l~~~a~Gs~~~al~ 220 (314)
T PRK07399 164 ESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEI------LNINFPELLALAQGSPGAAIA 220 (314)
T ss_pred HhCcHHHHhhceEEecCCCCHHHHHHHHHHhhcccc------chhHHHHHHHHcCCCHHHHHH
Confidence 3332 2334467899999999999999988643211 111136789999999976644
No 173
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.49 E-value=0.0014 Score=70.74 Aligned_cols=153 Identities=16% Similarity=0.121 Sum_probs=93.0
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHH
Q 002657 174 PAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDLRLENIQEIIGGKIGLMNESWKSKSLQEKSLDIFKI 253 (896)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 253 (896)
....+.|+|..|.|||.|++++.+.. .........+.+ +.......++..+.. .....+++.
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~---~~~~~~a~v~y~----~se~f~~~~v~a~~~-----------~~~~~Fk~~ 173 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEA---LANGPNARVVYL----TSEDFTNDFVKALRD-----------NEMEKFKEK 173 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHH---HhhCCCceEEec----cHHHHHHHHHHHHHh-----------hhHHHHHHh
Confidence 47889999999999999999999987 233332222332 233444444443321 123445555
Q ss_pred hCCceEEEEEecCCCccc---c-ccccccCCCCCCCCcEEEEecCCH---------HHHhhhccCcceeccCCChHhHHH
Q 002657 254 LGEKKFVLLLDDLWQRVD---L-TKVGVPLPSPQSSASKVVFTTRSE---------EICGLMEAQKKFKVACLSDKDAWE 320 (896)
Q Consensus 254 l~~kr~LlVlDdv~~~~~---~-~~l~~~~~~~~~~~s~iivTtR~~---------~v~~~~~~~~~~~l~~L~~~e~~~ 320 (896)
. .-=++++||++.... | +.+...|......|..||+|++.. .+.+.+..+-++++.+.+.+....
T Consensus 174 y--~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~a 251 (408)
T COG0593 174 Y--SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLA 251 (408)
T ss_pred h--ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHH
Confidence 5 333888999964221 2 222222221223445899999743 345666777899999999999999
Q ss_pred HHHHHhcCcccCCCCChHHHHHHHHHHhC
Q 002657 321 LFCHKVGEETLNNHPDIPELAQTVAKECG 349 (896)
Q Consensus 321 Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~ 349 (896)
++.+++.......+ +++..-|++...
T Consensus 252 iL~kka~~~~~~i~---~ev~~~la~~~~ 277 (408)
T COG0593 252 ILRKKAEDRGIEIP---DEVLEFLAKRLD 277 (408)
T ss_pred HHHHHHHhcCCCCC---HHHHHHHHHHhh
Confidence 99998765543333 334444444433
No 174
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.48 E-value=0.00089 Score=75.08 Aligned_cols=160 Identities=16% Similarity=0.203 Sum_probs=88.2
Q ss_pred ccchHHHHHHHHHHhcc-------------CCCeEEEEEcCCCchHHHHHHHHHhhhccCCC---CCCeEEEEEeCCccC
Q 002657 156 VVGLQSQLEQVWRCLVE-------------EPAGIVGLYGMGGVGKTTLLTHINNKFLQVPN---DFDCVIWVVVSKDLR 219 (896)
Q Consensus 156 ~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~---~f~~~~wv~~~~~~~ 219 (896)
+.|.+..++++.+.+.- ...+-+.++|++|+|||++|+.+++... ... .+....|+.+...
T Consensus 184 IgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~-~~i~~~~~~~~~fl~v~~~-- 260 (512)
T TIGR03689 184 IGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLA-QRIGAETGDKSYFLNIKGP-- 260 (512)
T ss_pred cCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhc-cccccccCCceeEEeccch--
Confidence 57899999988887631 1345688999999999999999999872 110 1223445544332
Q ss_pred HHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHh-CCceEEEEEecCCCcc---------cc-----ccccccCCC-CC
Q 002657 220 LENIQEIIGGKIGLMNESWKSKSLQEKSLDIFKIL-GEKKFVLLLDDLWQRV---------DL-----TKVGVPLPS-PQ 283 (896)
Q Consensus 220 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~~---------~~-----~~l~~~~~~-~~ 283 (896)
++ +...... ............++.. .+++++|+||+++... +. ..+...+.. ..
T Consensus 261 --eL----l~kyvGe----te~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~ 330 (512)
T TIGR03689 261 --EL----LNKYVGE----TERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVES 330 (512)
T ss_pred --hh----cccccch----HHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhccccc
Confidence 11 1100000 0001111112222221 3578999999996321 11 122222210 11
Q ss_pred CCCcEEEEecCCHHHHh--hh---ccCcceeccCCChHhHHHHHHHHhcC
Q 002657 284 SSASKVVFTTRSEEICG--LM---EAQKKFKVACLSDKDAWELFCHKVGE 328 (896)
Q Consensus 284 ~~~s~iivTtR~~~v~~--~~---~~~~~~~l~~L~~~e~~~Lf~~~~~~ 328 (896)
..+..||.||...+... .. .-+..|++...+.++..++|......
T Consensus 331 ~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~ 380 (512)
T TIGR03689 331 LDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTD 380 (512)
T ss_pred CCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhc
Confidence 23445666666554311 11 22446899999999999999988743
No 175
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.47 E-value=0.006 Score=73.78 Aligned_cols=44 Identities=32% Similarity=0.381 Sum_probs=37.0
Q ss_pred ccchHHHHHHHHHHhcc------CCCeEEEEEcCCCchHHHHHHHHHhhh
Q 002657 156 VVGLQSQLEQVWRCLVE------EPAGIVGLYGMGGVGKTTLLTHINNKF 199 (896)
Q Consensus 156 ~vGr~~~~~~l~~~L~~------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (896)
.+|.++.++.|.+++.. ....++.++|++|+|||++|+.+++..
T Consensus 322 ~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l 371 (775)
T TIGR00763 322 HYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKAL 371 (775)
T ss_pred cCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999998887642 234589999999999999999999986
No 176
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.43 E-value=0.017 Score=65.48 Aligned_cols=156 Identities=21% Similarity=0.208 Sum_probs=89.7
Q ss_pred ccchHHHHHHHHHHhcc------CCCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHH
Q 002657 156 VVGLQSQLEQVWRCLVE------EPAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDLRLENIQEIIGG 229 (896)
Q Consensus 156 ~vGr~~~~~~l~~~L~~------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 229 (896)
-+|.++.+++|++.|.- -+-+++++||++|+|||+|++.+++.. .+.|- =++++.--|..++-..=--
T Consensus 325 HYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al---~Rkfv---R~sLGGvrDEAEIRGHRRT 398 (782)
T COG0466 325 HYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKAL---GRKFV---RISLGGVRDEAEIRGHRRT 398 (782)
T ss_pred ccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHh---CCCEE---EEecCccccHHHhcccccc
Confidence 58999999999999852 245799999999999999999999987 34442 2344444444443221111
Q ss_pred hcCCCCccccccCHHHHHHHHHHHhCCceEEEEEecCCCcc------------------ccccccccCCCCCCCCcEEE-
Q 002657 230 KIGLMNESWKSKSLQEKSLDIFKILGEKKFVLLLDDLWQRV------------------DLTKVGVPLPSPQSSASKVV- 290 (896)
Q Consensus 230 ~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~------------------~~~~l~~~~~~~~~~~s~ii- 290 (896)
.+|.- ....++.+. ..+.+.-+++||.++... +-..+......-.-.=|+|+
T Consensus 399 YIGam--------PGrIiQ~mk-ka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmF 469 (782)
T COG0466 399 YIGAM--------PGKIIQGMK-KAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMF 469 (782)
T ss_pred ccccC--------ChHHHHHHH-HhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEE
Confidence 11111 111222222 234567789999996311 11111111100111224444
Q ss_pred EecCCH-H-H-HhhhccCcceeccCCChHhHHHHHHHHh
Q 002657 291 FTTRSE-E-I-CGLMEAQKKFKVACLSDKDAWELFCHKV 326 (896)
Q Consensus 291 vTtR~~-~-v-~~~~~~~~~~~l~~L~~~e~~~Lf~~~~ 326 (896)
|||-+. + + +..+....+|++.+.+++|-.++-+++.
T Consensus 470 iaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 470 IATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred EeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 344332 1 1 3344556789999999999888777765
No 177
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.43 E-value=2.9e-05 Score=89.64 Aligned_cols=109 Identities=25% Similarity=0.236 Sum_probs=47.2
Q ss_pred CCCccEEecccc-cccccc-hhhhccCCCCcEEEccCC-ccccccc----ccccCCCCCCEEeccCCC-ccccc-hhh-h
Q 002657 535 CPHLLTLFLNSN-ELKIIT-NDFFQFMPSLKVLSLSRN-RRLTNLQ----LGISKLVSLQHLDLSLTN-IEKLS-GEL-K 604 (896)
Q Consensus 535 ~~~L~~L~l~~n-~l~~i~-~~~~~~l~~L~~L~Ls~~-~~i~~lp----~~i~~L~~L~~L~Ls~~~-i~~lp-~~l-~ 604 (896)
++.|+.|.+.++ .+.... ..+...+++|+.|+++++ ..+...+ .....+++|+.|+++++. ++..- ..+ .
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 566666666665 333211 222455666666666652 1111111 122334555555555554 33111 111 2
Q ss_pred cCCCCCEeeccccccccCCc-HHHHhccccccEEEeeccC
Q 002657 605 ALVNLKCLNLEYTWSLVTIP-QQLIASFLRLHVLRMFGVG 643 (896)
Q Consensus 605 ~L~~L~~L~L~~~~~l~~lp-~~~i~~l~~L~~L~l~~~~ 643 (896)
.+++|++|.+.+|..++.-. ..+...+++|++|++.+|.
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence 24555555555553222111 1112344555555555443
No 178
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.41 E-value=0.00013 Score=68.89 Aligned_cols=104 Identities=23% Similarity=0.302 Sum_probs=69.7
Q ss_pred CCCccEEecccccccccchhhhccCCCCcEEEccCCcccccccccccC-CCCCCEEeccCCCccccch--hhhcCCCCCE
Q 002657 535 CPHLLTLFLNSNELKIITNDFFQFMPSLKVLSLSRNRRLTNLQLGISK-LVSLQHLDLSLTNIEKLSG--ELKALVNLKC 611 (896)
Q Consensus 535 ~~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~-L~~L~~L~Ls~~~i~~lp~--~l~~L~~L~~ 611 (896)
......++|++|.+..++. |..++.|..|.|++| .|+.+-..+.. +++|..|.|.+|+|.++.. .+..+++|++
T Consensus 41 ~d~~d~iDLtdNdl~~l~~--lp~l~rL~tLll~nN-rIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~ 117 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRKLDN--LPHLPRLHTLLLNNN-RITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEY 117 (233)
T ss_pred ccccceecccccchhhccc--CCCccccceEEecCC-cceeeccchhhhccccceEEecCcchhhhhhcchhccCCccce
Confidence 3456678888887776665 777888888888888 77776555544 5668888888887776632 3566778888
Q ss_pred eeccccccccCCc---HHHHhccccccEEEeecc
Q 002657 612 LNLEYTWSLVTIP---QQLIASFLRLHVLRMFGV 642 (896)
Q Consensus 612 L~L~~~~~l~~lp---~~~i~~l~~L~~L~l~~~ 642 (896)
|.+-+|. ++.-+ .-++..+++|+.|++...
T Consensus 118 Ltll~Np-v~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 118 LTLLGNP-VEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred eeecCCc-hhcccCceeEEEEecCcceEeehhhh
Confidence 8777772 22211 113566777777776643
No 179
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.41 E-value=0.0018 Score=71.16 Aligned_cols=167 Identities=16% Similarity=0.170 Sum_probs=95.4
Q ss_pred ccchHHHHHHHHHHhcc------------CCCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHH
Q 002657 156 VVGLQSQLEQVWRCLVE------------EPAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDLRLENI 223 (896)
Q Consensus 156 ~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 223 (896)
+=|.++.+.++.+++.. ...+-|.++|++|+|||.||++++++. . +-++.++.+
T Consensus 192 iGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel-~-------vPf~~isAp------ 257 (802)
T KOG0733|consen 192 IGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGEL-G-------VPFLSISAP------ 257 (802)
T ss_pred ccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhc-C-------CceEeecch------
Confidence 45889888888877642 245678899999999999999999987 2 233444332
Q ss_pred HHHHHHhcCCCCccccccCHHHHHHHHHHHhCCceEEEEEecCCCcc---c-----------------cccccccCCCCC
Q 002657 224 QEIIGGKIGLMNESWKSKSLQEKSLDIFKILGEKKFVLLLDDLWQRV---D-----------------LTKVGVPLPSPQ 283 (896)
Q Consensus 224 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~---~-----------------~~~l~~~~~~~~ 283 (896)
+|+.. +...+++.+.+.+.+..+.-++++++|+++-.. + .+.+.. ....
T Consensus 258 --eivSG-------vSGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~--~~~~ 326 (802)
T KOG0733|consen 258 --EIVSG-------VSGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSN--EKTK 326 (802)
T ss_pred --hhhcc-------cCcccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccc--cccC
Confidence 12221 133455556666667777899999999996310 0 112211 1012
Q ss_pred CCCcEEEEecCCHHH-H---hhhc-cCcceeccCCChHhHHHHHHHHhcCcccCCCCChHHHHHHHHHHhCCC
Q 002657 284 SSASKVVFTTRSEEI-C---GLME-AQKKFKVACLSDKDAWELFCHKVGEETLNNHPDIPELAQTVAKECGGM 351 (896)
Q Consensus 284 ~~~s~iivTtR~~~v-~---~~~~-~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~Gl 351 (896)
+.+--||-+|..++. - +..+ -++.|.+.--++.+-.+++...+.+-.....-++ ++|++..-|.
T Consensus 327 g~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~----~qlA~lTPGf 395 (802)
T KOG0733|consen 327 GDPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDF----KQLAKLTPGF 395 (802)
T ss_pred CCCeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCH----HHHHhcCCCc
Confidence 233334434433332 1 1111 2456777777776666677666654332223333 4455555443
No 180
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.41 E-value=0.0023 Score=73.34 Aligned_cols=170 Identities=14% Similarity=0.125 Sum_probs=91.9
Q ss_pred ccchHHHHHHHHHHhc---c---------CCCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHH
Q 002657 156 VVGLQSQLEQVWRCLV---E---------EPAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDLRLENI 223 (896)
Q Consensus 156 ~vGr~~~~~~l~~~L~---~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 223 (896)
++|.+..++++.+.+. . ...+-+.++|++|+|||++|+.+++.. ... ++.++. .++
T Consensus 57 i~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~---~~~-----~~~i~~----~~~ 124 (495)
T TIGR01241 57 VAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA---GVP-----FFSISG----SDF 124 (495)
T ss_pred hCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc---CCC-----eeeccH----HHH
Confidence 6788776665554432 2 123458899999999999999999875 222 222221 111
Q ss_pred HHHHHHhcCCCCccccccCHHHHHHHHHHHhCCceEEEEEecCCCcc----c--------cc----cccccCCC-CCCCC
Q 002657 224 QEIIGGKIGLMNESWKSKSLQEKSLDIFKILGEKKFVLLLDDLWQRV----D--------LT----KVGVPLPS-PQSSA 286 (896)
Q Consensus 224 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~----~--------~~----~l~~~~~~-~~~~~ 286 (896)
.... . ......+...+.......+.+|+|||++... . +. .+...+.. ....+
T Consensus 125 ~~~~---~--------g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~ 193 (495)
T TIGR01241 125 VEMF---V--------GVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTG 193 (495)
T ss_pred HHHH---h--------cccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCC
Confidence 1110 0 1112223333344445678899999995321 0 11 11111110 12234
Q ss_pred cEEEEecCCHHH-----HhhhccCcceeccCCChHhHHHHHHHHhcCcccCCCCChHHHHHHHHHHhCCCc
Q 002657 287 SKVVFTTRSEEI-----CGLMEAQKKFKVACLSDKDAWELFCHKVGEETLNNHPDIPELAQTVAKECGGMP 352 (896)
Q Consensus 287 s~iivTtR~~~v-----~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~GlP 352 (896)
..||.||...+. .+...-+..+.+...+.++-.++|............ .....+++.+.|.-
T Consensus 194 v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~----~~l~~la~~t~G~s 260 (495)
T TIGR01241 194 VIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPD----VDLKAVARRTPGFS 260 (495)
T ss_pred eEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcc----hhHHHHHHhCCCCC
Confidence 556667765432 111123457888888888888888887654321111 12457788887743
No 181
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.40 E-value=0.0081 Score=67.58 Aligned_cols=153 Identities=16% Similarity=0.187 Sum_probs=87.8
Q ss_pred ccchHHHHHHHHHHhcc------CCCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHH
Q 002657 156 VVGLQSQLEQVWRCLVE------EPAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDLRLENIQEIIGG 229 (896)
Q Consensus 156 ~vGr~~~~~~l~~~L~~------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 229 (896)
-+|.++-+++|++++.- -+-++++.+|++|+|||++|+.++... .+.| +-++|+.-.|..+|-..---
T Consensus 413 HYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~AL---nRkF---fRfSvGG~tDvAeIkGHRRT 486 (906)
T KOG2004|consen 413 HYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARAL---NRKF---FRFSVGGMTDVAEIKGHRRT 486 (906)
T ss_pred ccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHh---CCce---EEEeccccccHHhhccccee
Confidence 68999999999999853 256899999999999999999999987 3333 22455555555554322111
Q ss_pred hcCCCCccccccCHHHHHHHHHHHh---CCceEEEEEecCCCc------------------cccccccccCCCCCCCCcE
Q 002657 230 KIGLMNESWKSKSLQEKSLDIFKIL---GEKKFVLLLDDLWQR------------------VDLTKVGVPLPSPQSSASK 288 (896)
Q Consensus 230 ~l~~~~~~~~~~~~~~~~~~l~~~l---~~kr~LlVlDdv~~~------------------~~~~~l~~~~~~~~~~~s~ 288 (896)
.+| .+--++.+.| +...-|+.+|.|+.. ++-..+...+.+-.-.=|+
T Consensus 487 YVG------------AMPGkiIq~LK~v~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSk 554 (906)
T KOG2004|consen 487 YVG------------AMPGKIIQCLKKVKTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSK 554 (906)
T ss_pred eec------------cCChHHHHHHHhhCCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchhh
Confidence 111 1122333344 345668889998631 1111111111101112466
Q ss_pred EEEecCCHHHH----hhhccCcceeccCCChHhHHHHHHHHh
Q 002657 289 VVFTTRSEEIC----GLMEAQKKFKVACLSDKDAWELFCHKV 326 (896)
Q Consensus 289 iivTtR~~~v~----~~~~~~~~~~l~~L~~~e~~~Lf~~~~ 326 (896)
|++......+. ........|++.+...+|-.++-.++.
T Consensus 555 VLFicTAN~idtIP~pLlDRMEvIelsGYv~eEKv~IA~~yL 596 (906)
T KOG2004|consen 555 VLFICTANVIDTIPPPLLDRMEVIELSGYVAEEKVKIAERYL 596 (906)
T ss_pred eEEEEeccccccCChhhhhhhheeeccCccHHHHHHHHHHhh
Confidence 66543322221 122334678888888887766655543
No 182
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.39 E-value=1.6e-05 Score=78.27 Aligned_cols=103 Identities=27% Similarity=0.253 Sum_probs=76.7
Q ss_pred CCCCccEEecccccccccchhhhccCCCCcEEEccCCcccccccccccCCCCCCEEeccCCCccccch--hhhcCCCCCE
Q 002657 534 KCPHLLTLFLNSNELKIITNDFFQFMPSLKVLSLSRNRRLTNLQLGISKLVSLQHLDLSLTNIEKLSG--ELKALVNLKC 611 (896)
Q Consensus 534 ~~~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~Ls~~~i~~lp~--~l~~L~~L~~ 611 (896)
.+.+.+.|++.+|.+++|.- ...|+.|+||.||-| .|+.+. .+..+.+|+.|.|+.|.|..+-+ -+.+|++|+.
T Consensus 17 dl~~vkKLNcwg~~L~DIsi--c~kMp~lEVLsLSvN-kIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDISI--CEKMPLLEVLSLSVN-KISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT 92 (388)
T ss_pred HHHHhhhhcccCCCccHHHH--HHhcccceeEEeecc-ccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence 35567778888887777654 677888888888888 787774 67788888888888888876643 3678888999
Q ss_pred eeccccccccCCcH----HHHhccccccEEEee
Q 002657 612 LNLEYTWSLVTIPQ----QLIASFLRLHVLRMF 640 (896)
Q Consensus 612 L~L~~~~~l~~lp~----~~i~~l~~L~~L~l~ 640 (896)
|.|..|.....-+. .++.-|++|+.|+-.
T Consensus 93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv 125 (388)
T KOG2123|consen 93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLDNV 125 (388)
T ss_pred HhhccCCcccccchhHHHHHHHHcccchhccCc
Confidence 98888765554443 357788888888643
No 183
>PRK08116 hypothetical protein; Validated
Probab=97.34 E-value=0.00026 Score=73.53 Aligned_cols=103 Identities=23% Similarity=0.239 Sum_probs=58.9
Q ss_pred eEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHhC
Q 002657 176 GIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDLRLENIQEIIGGKIGLMNESWKSKSLQEKSLDIFKILG 255 (896)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 255 (896)
..+.++|.+|+|||.||..+++... .....+++++ ..+++..+........ ..+ ...+.+.+.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~---~~~~~v~~~~------~~~ll~~i~~~~~~~~----~~~----~~~~~~~l~ 177 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELI---EKGVPVIFVN------FPQLLNRIKSTYKSSG----KED----ENEIIRSLV 177 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH---HcCCeEEEEE------HHHHHHHHHHHHhccc----ccc----HHHHHHHhc
Confidence 4588999999999999999999873 1223456664 4455566655443211 111 122334444
Q ss_pred CceEEEEEecCC--Ccccccc--ccccCCCCCCCCcEEEEecCCH
Q 002657 256 EKKFVLLLDDLW--QRVDLTK--VGVPLPSPQSSASKVVFTTRSE 296 (896)
Q Consensus 256 ~kr~LlVlDdv~--~~~~~~~--l~~~~~~~~~~~s~iivTtR~~ 296 (896)
+-. ||||||+. ...+|.. +...+...-..+..+||||...
T Consensus 178 ~~d-lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 178 NAD-LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred CCC-EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 444 89999994 2333432 2222210112456688888754
No 184
>PRK10536 hypothetical protein; Provisional
Probab=97.32 E-value=0.0016 Score=65.57 Aligned_cols=54 Identities=15% Similarity=0.212 Sum_probs=41.0
Q ss_pred ccchHHHHHHHHHHhccCCCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEE
Q 002657 156 VVGLQSQLEQVWRCLVEEPAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWV 212 (896)
Q Consensus 156 ~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv 212 (896)
+.++......++.++.+. .+|.+.|++|+|||+||..++.+. -..+.|+.++.+
T Consensus 57 i~p~n~~Q~~~l~al~~~--~lV~i~G~aGTGKT~La~a~a~~~-l~~~~~~kIiI~ 110 (262)
T PRK10536 57 ILARNEAQAHYLKAIESK--QLIFATGEAGCGKTWISAAKAAEA-LIHKDVDRIIVT 110 (262)
T ss_pred ccCCCHHHHHHHHHHhcC--CeEEEECCCCCCHHHHHHHHHHHH-HhcCCeeEEEEe
Confidence 567888889999988764 499999999999999999988863 113445544443
No 185
>PRK08118 topology modulation protein; Reviewed
Probab=97.32 E-value=0.00015 Score=69.54 Aligned_cols=36 Identities=31% Similarity=0.559 Sum_probs=28.6
Q ss_pred eEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEE
Q 002657 176 GIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIW 211 (896)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~w 211 (896)
+.|.|+|++|+||||||+.+++...-..-+||..+|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 358899999999999999999987222246777776
No 186
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.30 E-value=0.0034 Score=69.25 Aligned_cols=163 Identities=19% Similarity=0.206 Sum_probs=96.9
Q ss_pred hHHHHHHHHHHhccCCCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCcc-CHHHHHHHHHHhcCCCCcc
Q 002657 159 LQSQLEQVWRCLVEEPAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDL-RLENIQEIIGGKIGLMNES 237 (896)
Q Consensus 159 r~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~ 237 (896)
|..-..++.+.+..... ++.|.|+=++||||+++.+.... ... .+++..-+.. +...+
T Consensus 22 ~~~~~~~l~~~~~~~~~-i~~i~GpR~~GKTtll~~l~~~~---~~~---~iy~~~~d~~~~~~~l-------------- 80 (398)
T COG1373 22 RRKLLPRLIKKLDLRPF-IILILGPRQVGKTTLLKLLIKGL---LEE---IIYINFDDLRLDRIEL-------------- 80 (398)
T ss_pred HHhhhHHHHhhcccCCc-EEEEECCccccHHHHHHHHHhhC---Ccc---eEEEEecchhcchhhH--------------
Confidence 44455566666555444 99999999999999997777665 122 4555433221 11111
Q ss_pred ccccCHHHHHHHHHHHhCCceEEEEEecCCCccccccccccCCCCCCCCcEEEEecCCHHHH-----hh-hccCcceecc
Q 002657 238 WKSKSLQEKSLDIFKILGEKKFVLLLDDLWQRVDLTKVGVPLPSPQSSASKVVFTTRSEEIC-----GL-MEAQKKFKVA 311 (896)
Q Consensus 238 ~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~~~s~iivTtR~~~v~-----~~-~~~~~~~~l~ 311 (896)
.+....+.+.-..++..++||.|....+|+.....+. +.+.. +|++|+-+.... .. .+....+.+.
T Consensus 81 ------~d~~~~~~~~~~~~~~yifLDEIq~v~~W~~~lk~l~-d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~ 152 (398)
T COG1373 81 ------LDLLRAYIELKEREKSYIFLDEIQNVPDWERALKYLY-DRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELY 152 (398)
T ss_pred ------HHHHHHHHHhhccCCceEEEecccCchhHHHHHHHHH-ccccc-eEEEECCchhhhccchhhhcCCCceeEEEC
Confidence 1111111111122778999999999999999887777 55544 899988876542 11 2334578999
Q ss_pred CCChHhHHHHHHHHhcCcccCCCCChHHHHHHHHHHhCCCchHHHH
Q 002657 312 CLSDKDAWELFCHKVGEETLNNHPDIPELAQTVAKECGGMPLALIT 357 (896)
Q Consensus 312 ~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~ 357 (896)
||+-.|-..+-...+ .. ... ...-+-.-..||.|.++..
T Consensus 153 PlSF~Efl~~~~~~~-----~~-~~~-~~~f~~Yl~~GGfP~~v~~ 191 (398)
T COG1373 153 PLSFREFLKLKGEEI-----EP-SKL-ELLFEKYLETGGFPESVKA 191 (398)
T ss_pred CCCHHHHHhhccccc-----ch-hHH-HHHHHHHHHhCCCcHHHhC
Confidence 999999876543000 00 011 1122222356888887754
No 187
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.23 E-value=0.0073 Score=65.08 Aligned_cols=145 Identities=9% Similarity=0.080 Sum_probs=83.8
Q ss_pred ccc-hHHHHHHHHHHhccCCCe-EEEEEcCCCchHHHHHHHHHhhhccCC-------------------CCCCeEEEEEe
Q 002657 156 VVG-LQSQLEQVWRCLVEEPAG-IVGLYGMGGVGKTTLLTHINNKFLQVP-------------------NDFDCVIWVVV 214 (896)
Q Consensus 156 ~vG-r~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~~f~~~~wv~~ 214 (896)
++| .+..++.+...+..++.. ...++|+.|+||||+|+.+.+...... .|.|.......
T Consensus 7 i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i~~~ 86 (329)
T PRK08058 7 LTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLVAPD 86 (329)
T ss_pred HHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEeccc
Confidence 567 777788888888776554 568999999999999999988752110 01121111100
Q ss_pred CCccCHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHH-----hCCceEEEEEecCCCc--cccccccccCCCCCCCCc
Q 002657 215 SKDLRLENIQEIIGGKIGLMNESWKSKSLQEKSLDIFKI-----LGEKKFVLLLDDLWQR--VDLTKVGVPLPSPQSSAS 287 (896)
Q Consensus 215 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~-----l~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~~s 287 (896)
+.. ...++... +.+. ..+++=++|+|++... .....+...+. ....++
T Consensus 87 ~~~-----------------------i~id~ir~-l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LE-EPp~~~ 141 (329)
T PRK08058 87 GQS-----------------------IKKDQIRY-LKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLE-EPSGGT 141 (329)
T ss_pred ccc-----------------------CCHHHHHH-HHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhc-CCCCCc
Confidence 010 11112211 1121 1244557899998643 22334444443 334566
Q ss_pred EEEEecCCHH-HH-hhhccCcceeccCCChHhHHHHHHHH
Q 002657 288 KVVFTTRSEE-IC-GLMEAQKKFKVACLSDKDAWELFCHK 325 (896)
Q Consensus 288 ~iivTtR~~~-v~-~~~~~~~~~~l~~L~~~e~~~Lf~~~ 325 (896)
.+|++|.+.. +. ...+....+++.+++.++..+.+.+.
T Consensus 142 ~~Il~t~~~~~ll~TIrSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 142 TAILLTENKHQILPTILSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred eEEEEeCChHhCcHHHHhhceeeeCCCCCHHHHHHHHHHc
Confidence 6776666543 22 22344578999999999998888653
No 188
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.22 E-value=0.00094 Score=76.95 Aligned_cols=190 Identities=15% Similarity=0.160 Sum_probs=97.4
Q ss_pred ccchHHHHHHHHHHhccC-----CCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCc---cCHHHHHHHH
Q 002657 156 VVGLQSQLEQVWRCLVEE-----PAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKD---LRLENIQEII 227 (896)
Q Consensus 156 ~vGr~~~~~~l~~~L~~~-----~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~---~~~~~~~~~i 227 (896)
++|.++.++++..++... ..+++.|+|++|+||||+++.++... .++..-|+..... .+...+...+
T Consensus 86 l~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l-----~~~~~Ew~npv~~~~~~~~~~~~~s~ 160 (637)
T TIGR00602 86 LAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKEL-----GIQVQEWSNPTLPDFQKNDHKVTLSL 160 (637)
T ss_pred hcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHh-----hhHHHHHhhhhhhcccccccccchhh
Confidence 899999999999998752 34679999999999999999999875 2333334321100 0011111222
Q ss_pred HHhcCCCCccccccCHHHHHHHHHH---H----hCCceEEEEEecCCCc-----cccccccc-cCCCCCCCCcEEEEecC
Q 002657 228 GGKIGLMNESWKSKSLQEKSLDIFK---I----LGEKKFVLLLDDLWQR-----VDLTKVGV-PLPSPQSSASKVVFTTR 294 (896)
Q Consensus 228 ~~~l~~~~~~~~~~~~~~~~~~l~~---~----l~~kr~LlVlDdv~~~-----~~~~~l~~-~~~~~~~~~s~iivTtR 294 (896)
..++..... .............. . ..+++.+|+||++.+. ..+..+.. ... ..+.-.-|++||-
T Consensus 161 ~~~~~~~~s--~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r~~~~lq~lLr~~~~-e~~~~pLI~I~TE 237 (637)
T TIGR00602 161 ESCFSNFQS--QIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYRDTRALHEILRWKYV-SIGRCPLVFIITE 237 (637)
T ss_pred hhccccccc--hHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchhhHHHHHHHHHHHhh-cCCCceEEEEecC
Confidence 222221100 00111111111111 1 1356789999999432 12333333 222 2222234555663
Q ss_pred CHH---------HH-------hhh--ccCcceeccCCChHhHHHHHHHHhcCcccCCCCC----hHHHHHHHHHHhCCCc
Q 002657 295 SEE---------IC-------GLM--EAQKKFKVACLSDKDAWELFCHKVGEETLNNHPD----IPELAQTVAKECGGMP 352 (896)
Q Consensus 295 ~~~---------v~-------~~~--~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~----~~~~~~~i~~~~~GlP 352 (896)
+.. .. ... .....|.++++...+-.+.+.+.+.........+ -.+....|+..++|--
T Consensus 238 ~~~~~~~~~~~~f~~~~lL~~eLls~~rv~~I~FnPia~t~l~K~L~rIl~~E~~~~~~~~~~p~~~~l~~I~~~s~GDi 317 (637)
T TIGR00602 238 SLEGDNNQRRLLFPAETIMNKEILEEPRVSNISFNPIAPTIMKKFLNRIVTIEAKKNGEKIKVPKKTSVELLCQGCSGDI 317 (637)
T ss_pred CccccccccccccchhcccCHhHhcccceeEEEeCCCCHHHHHHHHHHHHHhhhhccccccccCCHHHHHHHHHhCCChH
Confidence 211 00 111 1223588999999997777777664332111111 1355667777777644
Q ss_pred h
Q 002657 353 L 353 (896)
Q Consensus 353 l 353 (896)
-
T Consensus 318 R 318 (637)
T TIGR00602 318 R 318 (637)
T ss_pred H
Confidence 3
No 189
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.22 E-value=0.00062 Score=68.23 Aligned_cols=36 Identities=25% Similarity=0.419 Sum_probs=30.3
Q ss_pred EEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeC
Q 002657 177 IVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVS 215 (896)
Q Consensus 177 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~ 215 (896)
.++|+|..|+||||++..+.... ...|+++++++-.
T Consensus 15 r~viIG~sGSGKT~li~~lL~~~---~~~f~~I~l~t~~ 50 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYYL---RHKFDHIFLITPE 50 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHhh---cccCCEEEEEecC
Confidence 57799999999999999999876 5788888777553
No 190
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.21 E-value=0.02 Score=61.69 Aligned_cols=203 Identities=17% Similarity=0.238 Sum_probs=126.0
Q ss_pred hHHHHHHHHHHhccCCCeEEEEEcCCCchHHHHH-HHHHhhhccCCCCCCeEEEEEeCCc---cCHHHHHHHHHHhcCCC
Q 002657 159 LQSQLEQVWRCLVEEPAGIVGLYGMGGVGKTTLL-THINNKFLQVPNDFDCVIWVVVSKD---LRLENIQEIIGGKIGLM 234 (896)
Q Consensus 159 r~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~~f~~~~wv~~~~~---~~~~~~~~~i~~~l~~~ 234 (896)
|.+.+++|..||.+.....|.|.|+-|+||+.|+ .++.++. +.+..+.+.+- .+-..++..++.++|.-
T Consensus 1 R~e~~~~L~~wL~e~~~TFIvV~GPrGSGK~elV~d~~L~~r-------~~vL~IDC~~i~~ar~D~~~I~~lA~qvGY~ 73 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENPNTFIVVQGPRGSGKRELVMDHVLKDR-------KNVLVIDCDQIVKARGDAAFIKNLASQVGYF 73 (431)
T ss_pred CchHHHHHHHHHhcCCCeEEEEECCCCCCccHHHHHHHHhCC-------CCEEEEEChHhhhccChHHHHHHHHHhcCCC
Confidence 5667899999999988899999999999999999 7776653 12677766542 23456666666666532
Q ss_pred C-----------------------ccccccCHHHHH-------HHHHH-------------------HhC---CceEEEE
Q 002657 235 N-----------------------ESWKSKSLQEKS-------LDIFK-------------------ILG---EKKFVLL 262 (896)
Q Consensus 235 ~-----------------------~~~~~~~~~~~~-------~~l~~-------------------~l~---~kr~LlV 262 (896)
+ .++....+.++. ..|++ +|+ .++-+||
T Consensus 74 PvFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~PVVV 153 (431)
T PF10443_consen 74 PVFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERRPVVV 153 (431)
T ss_pred cchHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccCCEEE
Confidence 1 011111111111 11221 111 1356899
Q ss_pred EecCCCccc-----cccc---cccCCCCCCCCcEEEEecCCHHHHh----hhc--cCcceeccCCChHhHHHHHHHHhcC
Q 002657 263 LDDLWQRVD-----LTKV---GVPLPSPQSSASKVVFTTRSEEICG----LME--AQKKFKVACLSDKDAWELFCHKVGE 328 (896)
Q Consensus 263 lDdv~~~~~-----~~~l---~~~~~~~~~~~s~iivTtR~~~v~~----~~~--~~~~~~l~~L~~~e~~~Lf~~~~~~ 328 (896)
+|+.-...+ |+.+ ...+ -..+-.+||++|-+..... .+. ..+.+.|...+.+.|.++...+...
T Consensus 154 IdnF~~k~~~~~~iy~~laeWAa~L--v~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~L~~ 231 (431)
T PF10443_consen 154 IDNFLHKAEENDFIYDKLAEWAASL--VQNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQLDE 231 (431)
T ss_pred EcchhccCcccchHHHHHHHHHHHH--HhcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHHhcc
Confidence 999953211 2222 1222 2345568998888765533 222 3457899999999999999998865
Q ss_pred cccC------------CC-----CChHHHHHHHHHHhCCCchHHHHHHHhhcCCCCHHH
Q 002657 329 ETLN------------NH-----PDIPELAQTVAKECGGMPLALITIGRAMSCKRTPQE 370 (896)
Q Consensus 329 ~~~~------------~~-----~~~~~~~~~i~~~~~GlPlai~~~~~~l~~~~~~~~ 370 (896)
.... .+ .....-....++..||=-.-+..+++.++...++.+
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p~~ 290 (431)
T PF10443_consen 232 DTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESPEE 290 (431)
T ss_pred cccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCHHH
Confidence 3100 00 123344566778889988888888888887655543
No 191
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.20 E-value=0.011 Score=70.65 Aligned_cols=44 Identities=30% Similarity=0.335 Sum_probs=38.4
Q ss_pred ccchHHHHHHHHHHhcc------CCCeEEEEEcCCCchHHHHHHHHHhhh
Q 002657 156 VVGLQSQLEQVWRCLVE------EPAGIVGLYGMGGVGKTTLLTHINNKF 199 (896)
Q Consensus 156 ~vGr~~~~~~l~~~L~~------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (896)
.+|.++.+++|++++.. ....++.++|++|+||||+|+.++...
T Consensus 324 ~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l 373 (784)
T PRK10787 324 HYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKAT 373 (784)
T ss_pred ccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 78999999999988863 245689999999999999999999876
No 192
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.20 E-value=0.011 Score=62.72 Aligned_cols=172 Identities=12% Similarity=0.074 Sum_probs=94.0
Q ss_pred HHHHHHHHHhccCCCe-EEEEEcCCCchHHHHHHHHHhhhccCCCCCC----------------eEEEEEeCCccCHHHH
Q 002657 161 SQLEQVWRCLVEEPAG-IVGLYGMGGVGKTTLLTHINNKFLQVPNDFD----------------CVIWVVVSKDLRLENI 223 (896)
Q Consensus 161 ~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~----------------~~~wv~~~~~~~~~~~ 223 (896)
...+.+...+..+... .+.++|+.|+||+++|..+++...- ..... -..|+....+.
T Consensus 11 ~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC-~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~----- 84 (319)
T PRK08769 11 RAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLA-SGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNR----- 84 (319)
T ss_pred HHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhC-CCCCCCCcchHHHHHhcCCCCCEEEEecCCCc-----
Confidence 4456677777776554 5889999999999999998876521 11010 01111100000
Q ss_pred HHHHHHhcCCCCccc-cccCHHHHHHHHHHHh-----CCceEEEEEecCCCc--cccccccccCCCCCCCCcEEEEecCC
Q 002657 224 QEIIGGKIGLMNESW-KSKSLQEKSLDIFKIL-----GEKKFVLLLDDLWQR--VDLTKVGVPLPSPQSSASKVVFTTRS 295 (896)
Q Consensus 224 ~~~i~~~l~~~~~~~-~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~~s~iivTtR~ 295 (896)
.+... ..-..+ .+..+.+.+ .+++=++|+|+++.. ..-..+...+. .-..++.+|++|.+
T Consensus 85 ----------~~~k~~~~I~id-qIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLE-EPp~~~~fiL~~~~ 152 (319)
T PRK08769 85 ----------TGDKLRTEIVIE-QVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLE-EPSPGRYLWLISAQ 152 (319)
T ss_pred ----------ccccccccccHH-HHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhh-CCCCCCeEEEEECC
Confidence 00000 000111 122222322 245568999999643 22233332332 22345666666654
Q ss_pred H-HHH-hhhccCcceeccCCChHhHHHHHHHHhcCcccCCCCChHHHHHHHHHHhCCCchHHHHHH
Q 002657 296 E-EIC-GLMEAQKKFKVACLSDKDAWELFCHKVGEETLNNHPDIPELAQTVAKECGGMPLALITIG 359 (896)
Q Consensus 296 ~-~v~-~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~~ 359 (896)
. .+. ...+....+.+.+++.+++.+.+.+. +. + +..+..++..++|.|+.+..+.
T Consensus 153 ~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~-~~-----~---~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 153 PARLPATIRSRCQRLEFKLPPAHEALAWLLAQ-GV-----S---ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred hhhCchHHHhhheEeeCCCcCHHHHHHHHHHc-CC-----C---hHHHHHHHHHcCCCHHHHHHHh
Confidence 4 332 23344567899999999999888653 11 1 2236678999999998765443
No 193
>PRK07261 topology modulation protein; Provisional
Probab=97.17 E-value=0.00093 Score=64.47 Aligned_cols=66 Identities=18% Similarity=0.355 Sum_probs=42.1
Q ss_pred EEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHhCC
Q 002657 177 IVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDLRLENIQEIIGGKIGLMNESWKSKSLQEKSLDIFKILGE 256 (896)
Q Consensus 177 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~ 256 (896)
.|.|+|++|+||||||+.+.....-..-+.|...|-.. +...+.++....+.+.+.+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~ 58 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPN-----------------------WQERDDDDMIADISNFLLK 58 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEeccc-----------------------cccCCHHHHHHHHHHHHhC
Confidence 48899999999999999998765111123455555211 1223445566666777776
Q ss_pred ceEEEEEecCC
Q 002657 257 KKFVLLLDDLW 267 (896)
Q Consensus 257 kr~LlVlDdv~ 267 (896)
.+ .|+|+..
T Consensus 59 ~~--wIidg~~ 67 (171)
T PRK07261 59 HD--WIIDGNY 67 (171)
T ss_pred CC--EEEcCcc
Confidence 66 5778763
No 194
>CHL00176 ftsH cell division protein; Validated
Probab=97.15 E-value=0.0059 Score=71.11 Aligned_cols=169 Identities=15% Similarity=0.189 Sum_probs=94.3
Q ss_pred ccchHHHHHHHHHH---hccC---------CCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHH
Q 002657 156 VVGLQSQLEQVWRC---LVEE---------PAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDLRLENI 223 (896)
Q Consensus 156 ~vGr~~~~~~l~~~---L~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 223 (896)
+.|.++.++++.+. +... ..+-|.++|++|+|||++|+.+++.. ... |+.++.. ++
T Consensus 185 v~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~---~~p-----~i~is~s----~f 252 (638)
T CHL00176 185 IAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA---EVP-----FFSISGS----EF 252 (638)
T ss_pred ccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHh---CCC-----eeeccHH----HH
Confidence 67877666555444 4331 23568899999999999999999875 222 2333211 11
Q ss_pred HHHHHHhcCCCCccccccCHHHHHHHHHHHhCCceEEEEEecCCCcc------------c----cccccccCCC-CCCCC
Q 002657 224 QEIIGGKIGLMNESWKSKSLQEKSLDIFKILGEKKFVLLLDDLWQRV------------D----LTKVGVPLPS-PQSSA 286 (896)
Q Consensus 224 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~------------~----~~~l~~~~~~-~~~~~ 286 (896)
.... .+ .........+....+..+.+|++||++... . +..+...+.. ....+
T Consensus 253 ~~~~---~g--------~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ 321 (638)
T CHL00176 253 VEMF---VG--------VGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKG 321 (638)
T ss_pred HHHh---hh--------hhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCC
Confidence 1100 00 111222333445556788999999995321 1 1112111110 12345
Q ss_pred cEEEEecCCHHHHh--hhc---cCcceeccCCChHhHHHHHHHHhcCcccCCCCChHHHHHHHHHHhCCC
Q 002657 287 SKVVFTTRSEEICG--LME---AQKKFKVACLSDKDAWELFCHKVGEETLNNHPDIPELAQTVAKECGGM 351 (896)
Q Consensus 287 s~iivTtR~~~v~~--~~~---~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~Gl 351 (896)
..||.||...+... ... -+..+.+...+.++-.++++.++...... .......+++.+.|.
T Consensus 322 ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~----~d~~l~~lA~~t~G~ 387 (638)
T CHL00176 322 VIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLS----PDVSLELIARRTPGF 387 (638)
T ss_pred eeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccc----hhHHHHHHHhcCCCC
Confidence 56777777654322 111 23578888889999889998887543211 123356777787773
No 195
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.15 E-value=0.0028 Score=67.51 Aligned_cols=103 Identities=18% Similarity=0.185 Sum_probs=65.7
Q ss_pred HHHHHHHhcc-CCCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCe-EEEEEeCC-ccCHHHHHHHHHHhcCCCCcccc
Q 002657 163 LEQVWRCLVE-EPAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDC-VIWVVVSK-DLRLENIQEIIGGKIGLMNESWK 239 (896)
Q Consensus 163 ~~~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~-~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~ 239 (896)
..++++.+.. +.-.-+.|+|.+|+|||||++.+++... ..+-+. ++|+.+.+ ...+.++.+.+...+..+.....
T Consensus 120 ~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~--~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~ 197 (380)
T PRK12608 120 SMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVA--ANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRP 197 (380)
T ss_pred hHhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHH--hcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCC
Confidence 3457777764 4456779999999999999999998762 233344 36666665 45788899888887765321101
Q ss_pred ccC---HHHHHHHHHHHh--CCceEEEEEecCC
Q 002657 240 SKS---LQEKSLDIFKIL--GEKKFVLLLDDLW 267 (896)
Q Consensus 240 ~~~---~~~~~~~l~~~l--~~kr~LlVlDdv~ 267 (896)
... .......+.+++ ++++++||+|++.
T Consensus 198 ~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDslt 230 (380)
T PRK12608 198 PDEHIRVAELVLERAKRLVEQGKDVVILLDSLT 230 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcH
Confidence 111 111112222222 5899999999983
No 196
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.14 E-value=0.0012 Score=61.43 Aligned_cols=89 Identities=20% Similarity=0.090 Sum_probs=48.5
Q ss_pred CeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHh
Q 002657 175 AGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDLRLENIQEIIGGKIGLMNESWKSKSLQEKSLDIFKIL 254 (896)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 254 (896)
...+.|+|++|+||||+++.++.... .....++++..+........... ........ ...........+....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~ 74 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELG---PPGGGVIYIDGEDILEEVLDQLL-LIIVGGKK---ASGSGELRLRLALALA 74 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccC---CCCCCEEEECCEEccccCHHHHH-hhhhhccC---CCCCHHHHHHHHHHHH
Confidence 35789999999999999999998872 22234555554443222111111 00111000 1122223333444444
Q ss_pred CCc-eEEEEEecCCCcc
Q 002657 255 GEK-KFVLLLDDLWQRV 270 (896)
Q Consensus 255 ~~k-r~LlVlDdv~~~~ 270 (896)
+.. ..++++|++....
T Consensus 75 ~~~~~~viiiDei~~~~ 91 (148)
T smart00382 75 RKLKPDVLILDEITSLL 91 (148)
T ss_pred HhcCCCEEEEECCcccC
Confidence 443 4899999997643
No 197
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.12 E-value=0.015 Score=63.09 Aligned_cols=145 Identities=19% Similarity=0.193 Sum_probs=89.5
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHhcCCCCccccccCHHHHHHHH---
Q 002657 174 PAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDLRLENIQEIIGGKIGLMNESWKSKSLQEKSLDI--- 250 (896)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l--- 250 (896)
....+.+.|++|+|||+||..++.. ..|..+--++.. + +...++......+
T Consensus 537 ~lvSvLl~Gp~~sGKTaLAA~iA~~-----S~FPFvKiiSpe------~---------------miG~sEsaKc~~i~k~ 590 (744)
T KOG0741|consen 537 PLVSVLLEGPPGSGKTALAAKIALS-----SDFPFVKIISPE------D---------------MIGLSESAKCAHIKKI 590 (744)
T ss_pred cceEEEEecCCCCChHHHHHHHHhh-----cCCCeEEEeChH------H---------------ccCccHHHHHHHHHHH
Confidence 4567888999999999999999875 567755444211 1 1223333333333
Q ss_pred -HHHhCCceEEEEEecCCCccccccccccCC------------CCCCCCc--EEEEecCCHHHHhhhcc----Ccceecc
Q 002657 251 -FKILGEKKFVLLLDDLWQRVDLTKVGVPLP------------SPQSSAS--KVVFTTRSEEICGLMEA----QKKFKVA 311 (896)
Q Consensus 251 -~~~l~~kr~LlVlDdv~~~~~~~~l~~~~~------------~~~~~~s--~iivTtR~~~v~~~~~~----~~~~~l~ 311 (896)
....+..--.||+||+....+|-.++..|. .....|- -|+-||....+...|+- ...|.+.
T Consensus 591 F~DAYkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vp 670 (744)
T KOG0741|consen 591 FEDAYKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVP 670 (744)
T ss_pred HHHhhcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecC
Confidence 344455667999999987777766543221 1122333 45557777778777653 3578898
Q ss_pred CCCh-HhHHHHHHHHhcCcccCCCCChHHHHHHHHHHh
Q 002657 312 CLSD-KDAWELFCHKVGEETLNNHPDIPELAQTVAKEC 348 (896)
Q Consensus 312 ~L~~-~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~ 348 (896)
.++. ++..+.++..-- -.+.+.+.++.+.+.+|
T Consensus 671 nl~~~~~~~~vl~~~n~----fsd~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 671 NLTTGEQLLEVLEELNI----FSDDEVRAIAEQLLSKK 704 (744)
T ss_pred ccCchHHHHHHHHHccC----CCcchhHHHHHHHhccc
Confidence 8887 677777765421 12334556666666666
No 198
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.10 E-value=0.00088 Score=61.67 Aligned_cols=22 Identities=36% Similarity=0.446 Sum_probs=20.6
Q ss_pred EEEEcCCCchHHHHHHHHHhhh
Q 002657 178 VGLYGMGGVGKTTLLTHINNKF 199 (896)
Q Consensus 178 i~I~G~gGiGKTtLa~~v~~~~ 199 (896)
|.|+|++|+||||+|+.+++..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc
Confidence 5799999999999999999987
No 199
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.08 E-value=0.00031 Score=69.51 Aligned_cols=86 Identities=33% Similarity=0.340 Sum_probs=44.4
Q ss_pred ccCCCCcEEEccCC--cccccccccccCCCCCCEEeccCCCccccc--hhhhcCCCCCEeeccccccccCC---cHHHHh
Q 002657 557 QFMPSLKVLSLSRN--RRLTNLQLGISKLVSLQHLDLSLTNIEKLS--GELKALVNLKCLNLEYTWSLVTI---PQQLIA 629 (896)
Q Consensus 557 ~~l~~L~~L~Ls~~--~~i~~lp~~i~~L~~L~~L~Ls~~~i~~lp--~~l~~L~~L~~L~L~~~~~l~~l---p~~~i~ 629 (896)
..|++|+.|.+|.| +....++....++++|++|++++|+|+.+. ..+..+.+|..|++.+|. ...+ -..++.
T Consensus 62 P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~-~~~l~dyre~vf~ 140 (260)
T KOG2739|consen 62 PKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCS-VTNLDDYREKVFL 140 (260)
T ss_pred CCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCC-ccccccHHHHHHH
Confidence 33445555555554 222233333444455666666666554211 124556667777777763 2222 234466
Q ss_pred ccccccEEEeeccC
Q 002657 630 SFLRLHVLRMFGVG 643 (896)
Q Consensus 630 ~l~~L~~L~l~~~~ 643 (896)
-+++|..|+-.++.
T Consensus 141 ll~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 141 LLPSLKYLDGCDVD 154 (260)
T ss_pred HhhhhccccccccC
Confidence 67777777766543
No 200
>PRK12377 putative replication protein; Provisional
Probab=97.08 E-value=0.0013 Score=67.06 Aligned_cols=74 Identities=24% Similarity=0.259 Sum_probs=45.4
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHH
Q 002657 174 PAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDLRLENIQEIIGGKIGLMNESWKSKSLQEKSLDIFKI 253 (896)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 253 (896)
....+.++|.+|+|||+||..+++... .....+.++++. +++..+-..... ..... .+.+.
T Consensus 100 ~~~~l~l~G~~GtGKThLa~AIa~~l~---~~g~~v~~i~~~------~l~~~l~~~~~~------~~~~~----~~l~~ 160 (248)
T PRK12377 100 GCTNFVFSGKPGTGKNHLAAAIGNRLL---AKGRSVIVVTVP------DVMSRLHESYDN------GQSGE----KFLQE 160 (248)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCCeEEEEHH------HHHHHHHHHHhc------cchHH----HHHHH
Confidence 346789999999999999999999872 223345666443 444444443321 11111 22233
Q ss_pred hCCceEEEEEecCC
Q 002657 254 LGEKKFVLLLDDLW 267 (896)
Q Consensus 254 l~~kr~LlVlDdv~ 267 (896)
+ .+-=||||||+.
T Consensus 161 l-~~~dLLiIDDlg 173 (248)
T PRK12377 161 L-CKVDLLVLDEIG 173 (248)
T ss_pred h-cCCCEEEEcCCC
Confidence 3 345589999994
No 201
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.02 E-value=0.00016 Score=71.15 Aligned_cols=82 Identities=20% Similarity=0.216 Sum_probs=40.3
Q ss_pred CCCccEEecccccccccc----hhhhccCCCCcEEEccCCcccc----ccc-------ccccCCCCCCEEeccCCCcc-c
Q 002657 535 CPHLLTLFLNSNELKIIT----NDFFQFMPSLKVLSLSRNRRLT----NLQ-------LGISKLVSLQHLDLSLTNIE-K 598 (896)
Q Consensus 535 ~~~L~~L~l~~n~l~~i~----~~~~~~l~~L~~L~Ls~~~~i~----~lp-------~~i~~L~~L~~L~Ls~~~i~-~ 598 (896)
+..+..++|++|.+..-. ...+.+-++|++.+++.- ... ++| ..+-+|++|+..+||.|-+. .
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 455666666666432211 122344566666666654 211 122 23445666666666666443 2
Q ss_pred cch----hhhcCCCCCEeecccc
Q 002657 599 LSG----ELKALVNLKCLNLEYT 617 (896)
Q Consensus 599 lp~----~l~~L~~L~~L~L~~~ 617 (896)
.|. -|.+-+.|.||.+++|
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~Nn 130 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNN 130 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecC
Confidence 222 2344556666666665
No 202
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.01 E-value=0.023 Score=60.39 Aligned_cols=176 Identities=8% Similarity=0.025 Sum_probs=92.6
Q ss_pred HHHHHHHHhccCCC-eEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHhcCC-----CC
Q 002657 162 QLEQVWRCLVEEPA-GIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDLRLENIQEIIGGKIGL-----MN 235 (896)
Q Consensus 162 ~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~-----~~ 235 (896)
..+.+.+.+..+.. .-+.+.|+.|+||+++|+.++...... ...... .+.. ...-+.+...--. ..
T Consensus 10 ~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~-~~~~~~---~Cg~----C~sC~~~~~g~HPD~~~i~p 81 (325)
T PRK06871 10 TYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQ-TPQGDQ---PCGQ----CHSCHLFQAGNHPDFHILEP 81 (325)
T ss_pred HHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCC-CCCCCC---CCCC----CHHHHHHhcCCCCCEEEEcc
Confidence 34566777766554 466789999999999999998876211 100000 0000 0000111100000 00
Q ss_pred ccccccCHHHHHHHHHHHh-----CCceEEEEEecCCCc--cccccccccCCCCCCCCcEEEEecCCH-HHH-hhhccCc
Q 002657 236 ESWKSKSLQEKSLDIFKIL-----GEKKFVLLLDDLWQR--VDLTKVGVPLPSPQSSASKVVFTTRSE-EIC-GLMEAQK 306 (896)
Q Consensus 236 ~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~~s~iivTtR~~-~v~-~~~~~~~ 306 (896)
..-..-..++. ..+.+.+ .+++=++|+|+++.. .....+...+. ....++.+|++|.+. .+. ...+...
T Consensus 82 ~~~~~I~id~i-R~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLE-EPp~~~~fiL~t~~~~~llpTI~SRC~ 159 (325)
T PRK06871 82 IDNKDIGVDQV-REINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLE-EPRPNTYFLLQADLSAALLPTIYSRCQ 159 (325)
T ss_pred ccCCCCCHHHH-HHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhc-CCCCCeEEEEEECChHhCchHHHhhce
Confidence 00000111111 1222222 245568889999753 33344433333 333455666666654 333 3334467
Q ss_pred ceeccCCChHhHHHHHHHHhcCcccCCCCChHHHHHHHHHHhCCCchHH
Q 002657 307 KFKVACLSDKDAWELFCHKVGEETLNNHPDIPELAQTVAKECGGMPLAL 355 (896)
Q Consensus 307 ~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai 355 (896)
.+.+.+++.+++.+.+.+..... ...+...+..++|.|..+
T Consensus 160 ~~~~~~~~~~~~~~~L~~~~~~~--------~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 160 TWLIHPPEEQQALDWLQAQSSAE--------ISEILTALRINYGRPLLA 200 (325)
T ss_pred EEeCCCCCHHHHHHHHHHHhccC--------hHHHHHHHHHcCCCHHHH
Confidence 89999999999998887764211 123566788899999644
No 203
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.99 E-value=0.0097 Score=61.09 Aligned_cols=169 Identities=17% Similarity=0.165 Sum_probs=97.7
Q ss_pred ccchHHHHHHHHHHhcc----CCCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCH-HHHHHHHHHh
Q 002657 156 VVGLQSQLEQVWRCLVE----EPAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDLRL-ENIQEIIGGK 230 (896)
Q Consensus 156 ~vGr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~-~~~~~~i~~~ 230 (896)
++|-.++..++-.++.. ++..-+.|+|+.|.|||+|...+..+..+... ..+-|......-. +-.++.|..|
T Consensus 26 l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E---~~l~v~Lng~~~~dk~al~~I~rq 102 (408)
T KOG2228|consen 26 LFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDIQENGE---NFLLVRLNGELQTDKIALKGITRQ 102 (408)
T ss_pred eeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhHHhcCC---eEEEEEECccchhhHHHHHHHHHH
Confidence 89999999999988865 46667889999999999999888777422333 3344555444322 2234444444
Q ss_pred cCCCCc--cccccCHHHHHHHHHHHhCC------ceEEEEEecCCCccc------cccccccCCCCCCCCcEEEEecCCH
Q 002657 231 IGLMNE--SWKSKSLQEKSLDIFKILGE------KKFVLLLDDLWQRVD------LTKVGVPLPSPQSSASKVVFTTRSE 296 (896)
Q Consensus 231 l~~~~~--~~~~~~~~~~~~~l~~~l~~------kr~LlVlDdv~~~~~------~~~l~~~~~~~~~~~s~iivTtR~~ 296 (896)
+..... .....+..+...++...|+. -++++|+|.++--.. +-.+...-.....+-+-|-+|||-.
T Consensus 103 l~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrld 182 (408)
T KOG2228|consen 103 LALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRLD 182 (408)
T ss_pred HHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeecccc
Confidence 432111 11223444555566666642 368888888853110 1111111111234456677899965
Q ss_pred HH-------HhhhccCcceeccCCChHhHHHHHHHHhc
Q 002657 297 EI-------CGLMEAQKKFKVACLSDKDAWELFCHKVG 327 (896)
Q Consensus 297 ~v-------~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~ 327 (896)
-. -+..+-..++-++.++-++...++++...
T Consensus 183 ~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll~ 220 (408)
T KOG2228|consen 183 ILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLLS 220 (408)
T ss_pred HHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHhc
Confidence 32 22222223455677778888888877663
No 204
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.98 E-value=0.015 Score=62.03 Aligned_cols=37 Identities=30% Similarity=0.416 Sum_probs=28.5
Q ss_pred CeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEe
Q 002657 175 AGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVV 214 (896)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~ 214 (896)
...+.++|.+|+|||.||..+++... ... ..++|+++
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~--~~g-~~V~y~t~ 219 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELL--DRG-KSVIYRTA 219 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHH--HCC-CeEEEEEH
Confidence 37799999999999999999999872 223 34566644
No 205
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.98 E-value=0.0053 Score=58.59 Aligned_cols=137 Identities=15% Similarity=0.126 Sum_probs=72.0
Q ss_pred chHHHHHHHHHHhccCCCe-EEEEEcCCCchHHHHHHHHHhhhccCCC-----------------CCCeEEEEEeCCc--
Q 002657 158 GLQSQLEQVWRCLVEEPAG-IVGLYGMGGVGKTTLLTHINNKFLQVPN-----------------DFDCVIWVVVSKD-- 217 (896)
Q Consensus 158 Gr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~-----------------~f~~~~wv~~~~~-- 217 (896)
|-+...+.|.+.+..+... .+.++|+.|+||+|+|..+++....... ...-..|+.....
T Consensus 1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~ 80 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKK 80 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSS
T ss_pred CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccc
Confidence 5567777888888777654 5789999999999999999887521111 1122333332221
Q ss_pred -cCHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHhCCceEEEEEecCCCc--cccccccccCCCCCCCCcEEEEecC
Q 002657 218 -LRLENIQEIIGGKIGLMNESWKSKSLQEKSLDIFKILGEKKFVLLLDDLWQR--VDLTKVGVPLPSPQSSASKVVFTTR 294 (896)
Q Consensus 218 -~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~~s~iivTtR 294 (896)
....++. ++.+.+.... ..+++=++|+||++.. .....+...+. ....++.+|++|+
T Consensus 81 ~i~i~~ir-~i~~~~~~~~------------------~~~~~KviiI~~ad~l~~~a~NaLLK~LE-epp~~~~fiL~t~ 140 (162)
T PF13177_consen 81 SIKIDQIR-EIIEFLSLSP------------------SEGKYKVIIIDEADKLTEEAQNALLKTLE-EPPENTYFILITN 140 (162)
T ss_dssp SBSHHHHH-HHHHHCTSS-------------------TTSSSEEEEEETGGGS-HHHHHHHHHHHH-STTTTEEEEEEES
T ss_pred hhhHHHHH-HHHHHHHHHH------------------hcCCceEEEeehHhhhhHHHHHHHHHHhc-CCCCCEEEEEEEC
Confidence 2222222 3333322211 1234568899999753 33444444333 3445788888888
Q ss_pred CHHH--HhhhccCcceeccCCC
Q 002657 295 SEEI--CGLMEAQKKFKVACLS 314 (896)
Q Consensus 295 ~~~v--~~~~~~~~~~~l~~L~ 314 (896)
+..- ....+....+.+.+++
T Consensus 141 ~~~~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 141 NPSKILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp -GGGS-HHHHTTSEEEEE----
T ss_pred ChHHChHHHHhhceEEecCCCC
Confidence 7642 2222334556666653
No 206
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.93 E-value=0.00045 Score=68.37 Aligned_cols=103 Identities=28% Similarity=0.359 Sum_probs=78.1
Q ss_pred cccceEEEeecccccccccCCCCCCccEEecccc--ccc-ccchhhhccCCCCcEEEccCCccccccc--ccccCCCCCC
Q 002657 513 WENVSRLSLMQNRIKNLSEIPKCPHLLTLFLNSN--ELK-IITNDFFQFMPSLKVLSLSRNRRLTNLQ--LGISKLVSLQ 587 (896)
Q Consensus 513 ~~~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~n--~l~-~i~~~~~~~l~~L~~L~Ls~~~~i~~lp--~~i~~L~~L~ 587 (896)
...+..+++.+..+..+..++.+++|+.|.++.| .+. .++.- ...+++|++|++++| .+..+. ..+..+.+|.
T Consensus 42 ~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl-~e~~P~l~~l~ls~N-ki~~lstl~pl~~l~nL~ 119 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVL-AEKAPNLKVLNLSGN-KIKDLSTLRPLKELENLK 119 (260)
T ss_pred ccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceeh-hhhCCceeEEeecCC-ccccccccchhhhhcchh
Confidence 3477788888888888888999999999999999 332 23322 345699999999999 776531 2466788899
Q ss_pred EEeccCCCccccc----hhhhcCCCCCEeecccc
Q 002657 588 HLDLSLTNIEKLS----GELKALVNLKCLNLEYT 617 (896)
Q Consensus 588 ~L~Ls~~~i~~lp----~~l~~L~~L~~L~L~~~ 617 (896)
.|++.+|..+.+- ..+.-+++|++||-...
T Consensus 120 ~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 120 SLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred hhhcccCCccccccHHHHHHHHhhhhcccccccc
Confidence 9999999776653 23567889998886665
No 207
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=96.90 E-value=0.032 Score=59.15 Aligned_cols=164 Identities=13% Similarity=0.093 Sum_probs=92.9
Q ss_pred HHHHHHHHHhccCCC-eEEEEEcCCCchHHHHHHHHHhhhccCC------------------CCCCeEEEEEeCCccCHH
Q 002657 161 SQLEQVWRCLVEEPA-GIVGLYGMGGVGKTTLLTHINNKFLQVP------------------NDFDCVIWVVVSKDLRLE 221 (896)
Q Consensus 161 ~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~------------------~~f~~~~wv~~~~~~~~~ 221 (896)
...+++.+.+..++. ..+.+.|+.|+||+++|+.++....-.. .|.| ..|+.....
T Consensus 10 ~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD-~~~i~p~~~---- 84 (319)
T PRK06090 10 PVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPD-LHVIKPEKE---- 84 (319)
T ss_pred HHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCC-EEEEecCcC----
Confidence 344566666666554 4688999999999999999987652111 1111 112211000
Q ss_pred HHHHHHHHhcCCCCccccccCHHHHHHHHHHHh-----CCceEEEEEecCCCc--cccccccccCCCCCCCCcEEEEecC
Q 002657 222 NIQEIIGGKIGLMNESWKSKSLQEKSLDIFKIL-----GEKKFVLLLDDLWQR--VDLTKVGVPLPSPQSSASKVVFTTR 294 (896)
Q Consensus 222 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~~s~iivTtR 294 (896)
+ ..-..++. ..+.+.+ .+++=++|+|+++.. .....+...+. .-..++.+|++|.
T Consensus 85 -------------~---~~I~vdqi-R~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLE-EPp~~t~fiL~t~ 146 (319)
T PRK06090 85 -------------G---KSITVEQI-RQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLE-EPAPNCLFLLVTH 146 (319)
T ss_pred -------------C---CcCCHHHH-HHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhc-CCCCCeEEEEEEC
Confidence 0 00112222 2222232 234458889999643 33444443333 2334555565555
Q ss_pred CH-HHH-hhhccCcceeccCCChHhHHHHHHHHhcCcccCCCCChHHHHHHHHHHhCCCchHHHHH
Q 002657 295 SE-EIC-GLMEAQKKFKVACLSDKDAWELFCHKVGEETLNNHPDIPELAQTVAKECGGMPLALITI 358 (896)
Q Consensus 295 ~~-~v~-~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~ 358 (896)
+. .+. ...+....+.+.+++.+++.+.+.... . + .+..+++.++|.|+.+..+
T Consensus 147 ~~~~lLpTI~SRCq~~~~~~~~~~~~~~~L~~~~------~-~----~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 147 NQKRLLPTIVSRCQQWVVTPPSTAQAMQWLKGQG------I-T----VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred ChhhChHHHHhcceeEeCCCCCHHHHHHHHHHcC------C-c----hHHHHHHHcCCCHHHHHHH
Confidence 44 343 333456789999999999998886531 0 1 1456789999999977554
No 208
>PRK08181 transposase; Validated
Probab=96.85 E-value=0.0022 Score=66.31 Aligned_cols=105 Identities=19% Similarity=0.164 Sum_probs=56.4
Q ss_pred HHhccCCCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHhcCCCCccccccCHHHHH
Q 002657 168 RCLVEEPAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDLRLENIQEIIGGKIGLMNESWKSKSLQEKS 247 (896)
Q Consensus 168 ~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 247 (896)
+|+.. ..-+.++|++|+|||.||..+.+... .. ...+.|++ ..++...+..... .......
T Consensus 101 ~~~~~--~~nlll~Gp~GtGKTHLa~Aia~~a~--~~-g~~v~f~~------~~~L~~~l~~a~~-------~~~~~~~- 161 (269)
T PRK08181 101 SWLAK--GANLLLFGPPGGGKSHLAAAIGLALI--EN-GWRVLFTR------TTDLVQKLQVARR-------ELQLESA- 161 (269)
T ss_pred HHHhc--CceEEEEecCCCcHHHHHHHHHHHHH--Hc-CCceeeee------HHHHHHHHHHHHh-------CCcHHHH-
Confidence 45543 34589999999999999999998762 22 23445554 3455555543311 1122222
Q ss_pred HHHHHHhCCceEEEEEecCCCc--ccc-c-cccccCCCCCCCCcEEEEecCCH
Q 002657 248 LDIFKILGEKKFVLLLDDLWQR--VDL-T-KVGVPLPSPQSSASKVVFTTRSE 296 (896)
Q Consensus 248 ~~l~~~l~~kr~LlVlDdv~~~--~~~-~-~l~~~~~~~~~~~s~iivTtR~~ 296 (896)
.+.+. +.=||||||+... ..+ . .+...+. ....+..+||||...
T Consensus 162 ---l~~l~-~~dLLIIDDlg~~~~~~~~~~~Lf~lin-~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 162 ---IAKLD-KFDLLILDDLAYVTKDQAETSVLFELIS-ARYERRSILITANQP 209 (269)
T ss_pred ---HHHHh-cCCEEEEeccccccCCHHHHHHHHHHHH-HHHhCCCEEEEcCCC
Confidence 22222 3349999999532 111 1 1222221 111123588888865
No 209
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.83 E-value=0.018 Score=59.95 Aligned_cols=56 Identities=27% Similarity=0.283 Sum_probs=35.9
Q ss_pred HHHHHHHHHhccCCCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHH
Q 002657 161 SQLEQVWRCLVEEPAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDLRLENIQ 224 (896)
Q Consensus 161 ~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 224 (896)
+-.+++..++..+ +-|.+.|++|+|||++|+.+++.. .. ....+++....+..+++
T Consensus 9 ~l~~~~l~~l~~g--~~vLL~G~~GtGKT~lA~~la~~l---g~---~~~~i~~~~~~~~~dll 64 (262)
T TIGR02640 9 RVTSRALRYLKSG--YPVHLRGPAGTGKTTLAMHVARKR---DR---PVMLINGDAELTTSDLV 64 (262)
T ss_pred HHHHHHHHHHhcC--CeEEEEcCCCCCHHHHHHHHHHHh---CC---CEEEEeCCccCCHHHHh
Confidence 3445555555443 356689999999999999998754 22 23455555555555444
No 210
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=96.82 E-value=0.028 Score=63.51 Aligned_cols=196 Identities=14% Similarity=0.098 Sum_probs=111.6
Q ss_pred ccchHHHHHHHHHHhcc-----CCCeEEEEEcCCCchHHHHHHHHHhhhcc--C---CCCCCeEEEEEeCCccCHHHHHH
Q 002657 156 VVGLQSQLEQVWRCLVE-----EPAGIVGLYGMGGVGKTTLLTHINNKFLQ--V---PNDFDCVIWVVVSKDLRLENIQE 225 (896)
Q Consensus 156 ~vGr~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~--~---~~~f~~~~wv~~~~~~~~~~~~~ 225 (896)
+-+|+.+..+|-+++.. +..+.+.|.|.+|.|||..+..|.+.+.. . ...|+. +.|..-.-....+++.
T Consensus 398 LpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~y-veINgm~l~~~~~~Y~ 476 (767)
T KOG1514|consen 398 LPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDY-VEINGLRLASPREIYE 476 (767)
T ss_pred ccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccE-EEEcceeecCHHHHHH
Confidence 56899999999888753 23458999999999999999999986631 1 123433 3344444557899999
Q ss_pred HHHHhcCCCCccccccCHHHHHHHHHHHhC-----CceEEEEEecCCCccc--cccccccCCCCCCCCcEEEEecCCH--
Q 002657 226 IIGGKIGLMNESWKSKSLQEKSLDIFKILG-----EKKFVLLLDDLWQRVD--LTKVGVPLPSPQSSASKVVFTTRSE-- 296 (896)
Q Consensus 226 ~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~-----~kr~LlVlDdv~~~~~--~~~l~~~~~~~~~~~s~iivTtR~~-- 296 (896)
.|..++.... .......+.+..+.. .++.++++|+++..-. -+-+...|.+....+||++|-+=..
T Consensus 477 ~I~~~lsg~~-----~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaNTm 551 (767)
T KOG1514|consen 477 KIWEALSGER-----VTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIANTM 551 (767)
T ss_pred HHHHhcccCc-----ccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEecccc
Confidence 9999987643 233334444544443 4578999999853211 1111111221244567666543211
Q ss_pred H---------HHhhhccCcceeccCCChHhHHHHHHHHhcCcccCCCCChHHHHHHHHHHhCCCchHHHHH
Q 002657 297 E---------ICGLMEAQKKFKVACLSDKDAWELFCHKVGEETLNNHPDIPELAQTVAKECGGMPLALITI 358 (896)
Q Consensus 297 ~---------v~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~ 358 (896)
+ +++.+ ....+...|.+.++-.++...+......-.....+=++++|+.-.|..-.|+...
T Consensus 552 dlPEr~l~nrvsSRl-g~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic 621 (767)
T KOG1514|consen 552 DLPERLLMNRVSSRL-GLTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDIC 621 (767)
T ss_pred cCHHHHhccchhhhc-cceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHH
Confidence 1 11111 1235667777777777777666543321111223334455554444444444433
No 211
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.80 E-value=0.0095 Score=71.89 Aligned_cols=172 Identities=16% Similarity=0.168 Sum_probs=92.3
Q ss_pred ccchHHHHHHHHHHhcc-------------CCCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHH
Q 002657 156 VVGLQSQLEQVWRCLVE-------------EPAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDLRLEN 222 (896)
Q Consensus 156 ~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~ 222 (896)
+.|.+..++++.+.+.- ...+.|.++|++|+|||+||+.+++.. ...| +.++.. .
T Consensus 180 i~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~---~~~~-----i~i~~~----~ 247 (733)
T TIGR01243 180 IGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEA---GAYF-----ISINGP----E 247 (733)
T ss_pred hcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHh---CCeE-----EEEecH----H
Confidence 67999999888777632 234678899999999999999999876 2222 222211 1
Q ss_pred HHHHHHHhcCCCCccccccCHHHHHHHHHHHhCCceEEEEEecCCCcc-------------ccccccccCCCCCCCCcEE
Q 002657 223 IQEIIGGKIGLMNESWKSKSLQEKSLDIFKILGEKKFVLLLDDLWQRV-------------DLTKVGVPLPSPQSSASKV 289 (896)
Q Consensus 223 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~-------------~~~~l~~~~~~~~~~~s~i 289 (896)
+. ... .......+...+.......+.+|++||++... ....+...+......+..+
T Consensus 248 i~----~~~-------~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vi 316 (733)
T TIGR01243 248 IM----SKY-------YGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVI 316 (733)
T ss_pred Hh----ccc-------ccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEE
Confidence 11 000 11112223333334445677899999985321 0111222221011223334
Q ss_pred EE-ecCCHH-HHhhh----ccCcceeccCCChHhHHHHHHHHhcCcccCCCCChHHHHHHHHHHhCCCchH
Q 002657 290 VF-TTRSEE-ICGLM----EAQKKFKVACLSDKDAWELFCHKVGEETLNNHPDIPELAQTVAKECGGMPLA 354 (896)
Q Consensus 290 iv-TtR~~~-v~~~~----~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPla 354 (896)
+| ||.... +...+ .-...+.+...+.++-.+++...........+ .....+++.+.|.--+
T Consensus 317 vI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d----~~l~~la~~t~G~~ga 383 (733)
T TIGR01243 317 VIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAED----VDLDKLAEVTHGFVGA 383 (733)
T ss_pred EEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccc----cCHHHHHHhCCCCCHH
Confidence 44 554432 11111 11345778888888888888865543221111 1256778888886543
No 212
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.77 E-value=0.00059 Score=78.74 Aligned_cols=40 Identities=18% Similarity=0.206 Sum_probs=22.6
Q ss_pred CCEEeEecCcccchhcccCcccCCCCCc-CccccEeeccCCCccccc
Q 002657 777 LESIEVKSCLALEEIVSDVPEAMGNLNL-FAKLQYLELLGLPNLKSI 822 (896)
Q Consensus 777 L~~L~L~~c~~l~~i~~~~~~~~~~~~~-~~~L~~L~l~~~~~l~~i 822 (896)
|+.|++..|...+.-.- ..... +.+++.+.+.+|+.....
T Consensus 403 l~~L~l~~~~~~t~~~l------~~~~~~~~~~~~l~~~~~~~~~~~ 443 (482)
T KOG1947|consen 403 LRVLNLSDCRLVTDKGL------RCLADSCSNLKDLDLSGCRVITLK 443 (482)
T ss_pred cceEecccCccccccch------HHHhhhhhccccCCccCcccccch
Confidence 77777777765554321 11111 566777777777665543
No 213
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.76 E-value=0.0034 Score=61.80 Aligned_cols=89 Identities=16% Similarity=0.189 Sum_probs=52.9
Q ss_pred CeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCc-cCHHHHHHHHHHhcCCCCccc-cccCHHHHHHHHHH
Q 002657 175 AGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKD-LRLENIQEIIGGKIGLMNESW-KSKSLQEKSLDIFK 252 (896)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~l~~ 252 (896)
.+||.++|+.|+||||.+.+++... ..+ -..+..++.... ....+-++..++.++.+.... ...+..+......+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~-~~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~ 77 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARL-KLK--GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALE 77 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHH-HHT--T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHH-hhc--cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHH
Confidence 3689999999999999999888877 222 445677776432 345667788888888653211 12233344433333
Q ss_pred HhCCc-eEEEEEecC
Q 002657 253 ILGEK-KFVLLLDDL 266 (896)
Q Consensus 253 ~l~~k-r~LlVlDdv 266 (896)
..+.+ .=++++|=.
T Consensus 78 ~~~~~~~D~vlIDT~ 92 (196)
T PF00448_consen 78 KFRKKGYDLVLIDTA 92 (196)
T ss_dssp HHHHTTSSEEEEEE-
T ss_pred HHhhcCCCEEEEecC
Confidence 33332 236667766
No 214
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.76 E-value=0.0083 Score=72.12 Aligned_cols=44 Identities=23% Similarity=0.437 Sum_probs=36.1
Q ss_pred ccchHHHHHHHHHHhcc-------C--CCeEEEEEcCCCchHHHHHHHHHhhh
Q 002657 156 VVGLQSQLEQVWRCLVE-------E--PAGIVGLYGMGGVGKTTLLTHINNKF 199 (896)
Q Consensus 156 ~vGr~~~~~~l~~~L~~-------~--~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (896)
++|.+..++.+.+.+.. . ...++.++|+.|+|||+||+.+++..
T Consensus 456 v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l 508 (731)
T TIGR02639 456 IFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEAL 508 (731)
T ss_pred eeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHh
Confidence 68888888888887753 1 24468899999999999999999876
No 215
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.74 E-value=0.15 Score=62.19 Aligned_cols=44 Identities=32% Similarity=0.455 Sum_probs=36.5
Q ss_pred ccchHHHHHHHHHHhcc-------C--CCeEEEEEcCCCchHHHHHHHHHhhh
Q 002657 156 VVGLQSQLEQVWRCLVE-------E--PAGIVGLYGMGGVGKTTLLTHINNKF 199 (896)
Q Consensus 156 ~vGr~~~~~~l~~~L~~-------~--~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (896)
++|.+..++.+...+.. . ...++.++|+.|+|||++|+.+++..
T Consensus 570 viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l 622 (857)
T PRK10865 570 VIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFM 622 (857)
T ss_pred EeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 78999998888888753 1 23578899999999999999999875
No 216
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.70 E-value=0.033 Score=64.99 Aligned_cols=102 Identities=24% Similarity=0.353 Sum_probs=63.8
Q ss_pred ccchHHHHHHHHHHhcc---------CCCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHH
Q 002657 156 VVGLQSQLEQVWRCLVE---------EPAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDLRLENIQEI 226 (896)
Q Consensus 156 ~vGr~~~~~~l~~~L~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 226 (896)
++|.+..++.+.+.+.. .+..+....|+.|||||.||++++... -+.-+..+-++.|.-.....
T Consensus 493 ViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~L---fg~e~aliR~DMSEy~EkHs---- 565 (786)
T COG0542 493 VIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEAL---FGDEQALIRIDMSEYMEKHS---- 565 (786)
T ss_pred eeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHh---cCCCccceeechHHHHHHHH----
Confidence 89999999999998853 245678889999999999999999876 11113444444443322222
Q ss_pred HHHhcCCCCccccccCHHHHHHHHHHHhCCceE-EEEEecCCC
Q 002657 227 IGGKIGLMNESWKSKSLQEKSLDIFKILGEKKF-VLLLDDLWQ 268 (896)
Q Consensus 227 i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~-LlVlDdv~~ 268 (896)
+.+-+|.++. +-.-+ + --.|-+.++.+|| +|.||++..
T Consensus 566 VSrLIGaPPG-YVGye--e-GG~LTEaVRr~PySViLlDEIEK 604 (786)
T COG0542 566 VSRLIGAPPG-YVGYE--E-GGQLTEAVRRKPYSVILLDEIEK 604 (786)
T ss_pred HHHHhCCCCC-Cceec--c-ccchhHhhhcCCCeEEEechhhh
Confidence 2233343321 11111 1 2345566777888 778899963
No 217
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.68 E-value=0.062 Score=60.06 Aligned_cols=89 Identities=19% Similarity=0.241 Sum_probs=48.2
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCC-ccCHHHHHHHHHHhcCCCCccccccCHHHHHHHHHH
Q 002657 174 PAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSK-DLRLENIQEIIGGKIGLMNESWKSKSLQEKSLDIFK 252 (896)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 252 (896)
...+|+|+|++|+||||++.+++... ..+.....+..++... .....+.++...+.++.... ...+...+...+.
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~l-a~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~--~a~d~~~L~~aL~- 424 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRF-AAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVH--EADSAESLLDLLE- 424 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH-HHhcCCCceEEEecccccccHHHHHHHhhcccCceeE--ecCcHHHHHHHHH-
Confidence 35799999999999999999988765 2222233455555422 11222333344444443221 1122333333333
Q ss_pred HhCCceEEEEEecCC
Q 002657 253 ILGEKKFVLLLDDLW 267 (896)
Q Consensus 253 ~l~~kr~LlVlDdv~ 267 (896)
.+.+ .=+|++|..-
T Consensus 425 ~l~~-~DLVLIDTaG 438 (559)
T PRK12727 425 RLRD-YKLVLIDTAG 438 (559)
T ss_pred Hhcc-CCEEEecCCC
Confidence 3333 4477888873
No 218
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.67 E-value=0.049 Score=58.51 Aligned_cols=165 Identities=13% Similarity=0.089 Sum_probs=93.0
Q ss_pred HHHHHHHHhccCCC-eEEEEEcCCCchHHHHHHHHHhhhccCC-------------------CCCCeEEEEEeCCccCHH
Q 002657 162 QLEQVWRCLVEEPA-GIVGLYGMGGVGKTTLLTHINNKFLQVP-------------------NDFDCVIWVVVSKDLRLE 221 (896)
Q Consensus 162 ~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~~f~~~~wv~~~~~~~~~ 221 (896)
.-+++.+.+..+++ .-+.+.|+.|+||+++|..++....-.. .|.|. .++.-...
T Consensus 10 ~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~-~~i~p~~~---- 84 (334)
T PRK07993 10 DYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDY-YTLTPEKG---- 84 (334)
T ss_pred HHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCE-EEEecccc----
Confidence 44667777766654 4577899999999999999887652110 11121 11111000
Q ss_pred HHHHHHHHhcCCCCccccccCHHHHHHHHHHHh-----CCceEEEEEecCCCc--cccccccccCCCCCCCCcEEEEecC
Q 002657 222 NIQEIIGGKIGLMNESWKSKSLQEKSLDIFKIL-----GEKKFVLLLDDLWQR--VDLTKVGVPLPSPQSSASKVVFTTR 294 (896)
Q Consensus 222 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~~s~iivTtR 294 (896)
. ..-..++. ..+.+.+ .+++=++|+|+++.. .....+...+. .-..++.+|++|.
T Consensus 85 -------------~---~~I~idqi-R~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLE-EPp~~t~fiL~t~ 146 (334)
T PRK07993 85 -------------K---SSLGVDAV-REVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLE-EPPENTWFFLACR 146 (334)
T ss_pred -------------c---ccCCHHHH-HHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhc-CCCCCeEEEEEEC
Confidence 0 00111221 1222222 245668999999643 33333433333 2334555555555
Q ss_pred C-HHHH-hhhccCcceeccCCChHhHHHHHHHHhcCcccCCCCChHHHHHHHHHHhCCCchHHHH
Q 002657 295 S-EEIC-GLMEAQKKFKVACLSDKDAWELFCHKVGEETLNNHPDIPELAQTVAKECGGMPLALIT 357 (896)
Q Consensus 295 ~-~~v~-~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~ 357 (896)
+ ..+. ...+....+.+.+++.+++.+.+.+..+.+ .+.+..++..++|.|..+..
T Consensus 147 ~~~~lLpTIrSRCq~~~~~~~~~~~~~~~L~~~~~~~--------~~~a~~~~~la~G~~~~Al~ 203 (334)
T PRK07993 147 EPARLLATLRSRCRLHYLAPPPEQYALTWLSREVTMS--------QDALLAALRLSAGAPGAALA 203 (334)
T ss_pred ChhhChHHHHhccccccCCCCCHHHHHHHHHHccCCC--------HHHHHHHHHHcCCCHHHHHH
Confidence 4 4443 333445678999999999998886543211 23367889999999975443
No 219
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.66 E-value=0.067 Score=57.34 Aligned_cols=91 Identities=15% Similarity=0.242 Sum_probs=55.5
Q ss_pred CceEEEEEecCCCc--cccccccccCCCCCCCCcEEEEecCC-HHHH-hhhccCcceeccCCChHhHHHHHHHHhcCccc
Q 002657 256 EKKFVLLLDDLWQR--VDLTKVGVPLPSPQSSASKVVFTTRS-EEIC-GLMEAQKKFKVACLSDKDAWELFCHKVGEETL 331 (896)
Q Consensus 256 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~~s~iivTtR~-~~v~-~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~ 331 (896)
+++=++|+|+++.. .....+...+. .-..++.+|++|.+ ..+. ...+....+.+.+++.++..+.+... +.
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLE-EPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~-~~--- 205 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLE-EPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQ-GV--- 205 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhc-CCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHc-CC---
Confidence 34558889999743 33444444443 33445555555544 4443 33344578999999999999888764 11
Q ss_pred CCCCChHHHHHHHHHHhCCCchHHHHH
Q 002657 332 NNHPDIPELAQTVAKECGGMPLALITI 358 (896)
Q Consensus 332 ~~~~~~~~~~~~i~~~~~GlPlai~~~ 358 (896)
+. ...++..++|.|..+..+
T Consensus 206 ---~~----~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 206 ---AD----ADALLAEAGGAPLAALAL 225 (342)
T ss_pred ---Ch----HHHHHHHcCCCHHHHHHH
Confidence 11 233577889999765444
No 220
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.65 E-value=0.0014 Score=59.22 Aligned_cols=23 Identities=26% Similarity=0.522 Sum_probs=21.6
Q ss_pred EEEEEcCCCchHHHHHHHHHhhh
Q 002657 177 IVGLYGMGGVGKTTLLTHINNKF 199 (896)
Q Consensus 177 vi~I~G~gGiGKTtLa~~v~~~~ 199 (896)
||.|.|++|+||||+|+.+++..
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999976
No 221
>PRK06921 hypothetical protein; Provisional
Probab=96.63 E-value=0.0017 Score=67.40 Aligned_cols=39 Identities=28% Similarity=0.367 Sum_probs=29.2
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEe
Q 002657 174 PAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVV 214 (896)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~ 214 (896)
....+.++|..|+|||+||..+++... +..-..++|++.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~--~~~g~~v~y~~~ 154 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELM--RKKGVPVLYFPF 154 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHh--hhcCceEEEEEH
Confidence 456799999999999999999999872 221344566654
No 222
>PRK09183 transposase/IS protein; Provisional
Probab=96.62 E-value=0.0041 Score=64.36 Aligned_cols=25 Identities=32% Similarity=0.383 Sum_probs=21.9
Q ss_pred CeEEEEEcCCCchHHHHHHHHHhhh
Q 002657 175 AGIVGLYGMGGVGKTTLLTHINNKF 199 (896)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (896)
...+.|+|++|+|||+||..+++..
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a 126 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEA 126 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHH
Confidence 4567799999999999999998775
No 223
>PRK04296 thymidine kinase; Provisional
Probab=96.62 E-value=0.0023 Score=62.97 Aligned_cols=113 Identities=18% Similarity=0.084 Sum_probs=63.2
Q ss_pred eEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHhC
Q 002657 176 GIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDLRLENIQEIIGGKIGLMNESWKSKSLQEKSLDIFKILG 255 (896)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 255 (896)
.++.|+|..|.||||+|..++.... .+-..++.+.- .++.+.....++.+++............+....+.+ ..
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~---~~g~~v~i~k~--~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~ 76 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYE---ERGMKVLVFKP--AIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EG 76 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHH---HcCCeEEEEec--cccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hC
Confidence 4788999999999999999988762 22233343421 112222233456666543322112334444455544 33
Q ss_pred CceEEEEEecCCCc--cccccccccCCCCCCCCcEEEEecCCHH
Q 002657 256 EKKFVLLLDDLWQR--VDLTKVGVPLPSPQSSASKVVFTTRSEE 297 (896)
Q Consensus 256 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~~s~iivTtR~~~ 297 (896)
++.-+||+|.+... ++..++...+ ...|..||+|.++.+
T Consensus 77 ~~~dvviIDEaq~l~~~~v~~l~~~l---~~~g~~vi~tgl~~~ 117 (190)
T PRK04296 77 EKIDCVLIDEAQFLDKEQVVQLAEVL---DDLGIPVICYGLDTD 117 (190)
T ss_pred CCCCEEEEEccccCCHHHHHHHHHHH---HHcCCeEEEEecCcc
Confidence 45558999999432 1122222221 346788999999853
No 224
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.60 E-value=0.016 Score=65.26 Aligned_cols=171 Identities=13% Similarity=0.055 Sum_probs=89.4
Q ss_pred ccchHHHHHHHHHHh---cc-------CCCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHH
Q 002657 156 VVGLQSQLEQVWRCL---VE-------EPAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDLRLENIQE 225 (896)
Q Consensus 156 ~vGr~~~~~~l~~~L---~~-------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 225 (896)
+.|.+..++.+.+.. .. ...+-|.++|++|+|||.+|+.+++.. ...| +-+..+ .+..
T Consensus 230 vgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~---~~~~---~~l~~~------~l~~ 297 (489)
T CHL00195 230 IGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDW---QLPL---LRLDVG------KLFG 297 (489)
T ss_pred hcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCCE---EEEEhH------Hhcc
Confidence 567766655554321 11 234678899999999999999999986 2222 112111 1110
Q ss_pred HHHHhcCCCCccccccCHHHHHHHHHHHhCCceEEEEEecCCCcc----cc----------ccccccCCCCCCCCcEEEE
Q 002657 226 IIGGKIGLMNESWKSKSLQEKSLDIFKILGEKKFVLLLDDLWQRV----DL----------TKVGVPLPSPQSSASKVVF 291 (896)
Q Consensus 226 ~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~----~~----------~~l~~~~~~~~~~~s~iiv 291 (896)
. +...+...+...+...-...+++|++|+++... .. ..+...+. ....+.-||.
T Consensus 298 ----~-------~vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~-~~~~~V~vIa 365 (489)
T CHL00195 298 ----G-------IVGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLS-EKKSPVFVVA 365 (489)
T ss_pred ----c-------ccChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHh-cCCCceEEEE
Confidence 0 011122222222222234578999999996321 00 00111111 1233445666
Q ss_pred ecCCHHH-----HhhhccCcceeccCCChHhHHHHHHHHhcCcccCCCCChHHHHHHHHHHhCCCc
Q 002657 292 TTRSEEI-----CGLMEAQKKFKVACLSDKDAWELFCHKVGEETLNNHPDIPELAQTVAKECGGMP 352 (896)
Q Consensus 292 TtR~~~v-----~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~GlP 352 (896)
||...+. .+...-+..+.++.-+.++-.++|..+.......... ..-...+++.+.|.-
T Consensus 366 TTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~--~~dl~~La~~T~GfS 429 (489)
T CHL00195 366 TANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWK--KYDIKKLSKLSNKFS 429 (489)
T ss_pred ecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCccc--ccCHHHHHhhcCCCC
Confidence 7765532 1111234578888889999899998877553211111 111456667776653
No 225
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.60 E-value=0.0026 Score=67.54 Aligned_cols=44 Identities=23% Similarity=0.382 Sum_probs=39.8
Q ss_pred ccchHHHHHHHHHHhcc------CCCeEEEEEcCCCchHHHHHHHHHhhh
Q 002657 156 VVGLQSQLEQVWRCLVE------EPAGIVGLYGMGGVGKTTLLTHINNKF 199 (896)
Q Consensus 156 ~vGr~~~~~~l~~~L~~------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (896)
++|.++.++++++++.. ...+++.++|++|+||||||+.+.+..
T Consensus 53 ~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l 102 (361)
T smart00763 53 FFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGL 102 (361)
T ss_pred ccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 89999999999999864 246899999999999999999999987
No 226
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.58 E-value=0.00016 Score=71.48 Aligned_cols=97 Identities=30% Similarity=0.308 Sum_probs=64.9
Q ss_pred ccceEEEeecccccccccCCCCCCccEEecccccccccchhhhccCCCCcEEEccCCccccccc--ccccCCCCCCEEec
Q 002657 514 ENVSRLSLMQNRIKNLSEIPKCPHLLTLFLNSNELKIITNDFFQFMPSLKVLSLSRNRRLTNLQ--LGISKLVSLQHLDL 591 (896)
Q Consensus 514 ~~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~Ls~~~~i~~lp--~~i~~L~~L~~L~L 591 (896)
.+++.|++.++.+.++.-..+++.|++|.|+-|.++.+.+ |..|++|+.|.|..| .|..+- ..+.++++|+.|-|
T Consensus 19 ~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN-~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKN-CIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HHhhhhcccCCCccHHHHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhc-ccccHHHHHHHhcCchhhhHhh
Confidence 3566677777777777666777777777777777776665 677777777777777 665553 24667777777777
Q ss_pred cCCCcc-ccc-----hhhhcCCCCCEee
Q 002657 592 SLTNIE-KLS-----GELKALVNLKCLN 613 (896)
Q Consensus 592 s~~~i~-~lp-----~~l~~L~~L~~L~ 613 (896)
..|... .-+ ..+.-|+||+.||
T Consensus 96 ~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 96 DENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred ccCCcccccchhHHHHHHHHcccchhcc
Confidence 666322 111 1256678888776
No 227
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=96.58 E-value=0.014 Score=66.12 Aligned_cols=55 Identities=27% Similarity=0.438 Sum_probs=43.0
Q ss_pred ccchHHHHHHHHHHhcc-----CCCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeC
Q 002657 156 VVGLQSQLEQVWRCLVE-----EPAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVS 215 (896)
Q Consensus 156 ~vGr~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~ 215 (896)
++--.+-++++..||.+ ...+++.+.|++|+||||.++.++++. .|+.+-|....
T Consensus 21 LavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~el-----g~~v~Ew~np~ 80 (519)
T PF03215_consen 21 LAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKEL-----GFEVQEWINPV 80 (519)
T ss_pred hhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHh-----CCeeEEecCCC
Confidence 44456677888888865 235799999999999999999999876 57777787543
No 228
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.56 E-value=0.007 Score=60.83 Aligned_cols=88 Identities=15% Similarity=0.181 Sum_probs=52.9
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHhc-CCCCcc---ccccC---HHHH
Q 002657 174 PAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDLRLENIQEIIGGKI-GLMNES---WKSKS---LQEK 246 (896)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l-~~~~~~---~~~~~---~~~~ 246 (896)
..+++.|+|++|+|||+++.+++.... .....++|++... ++...+.+. ++.. ...... ....+ ....
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~---~~g~~v~yi~~e~-~~~~rl~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ 85 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNAA---RQGKKVVYIDTEG-LSPERFKQI-AEDRPERALSNFIVFEVFDFDEQGVA 85 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---hCCCeEEEEECCC-CCHHHHHHH-HHhChHHHhcCEEEEECCCHHHHHHH
Confidence 468999999999999999999887762 3346789999875 565554443 2221 000000 01112 2223
Q ss_pred HHHHHHHhCC-ceEEEEEecC
Q 002657 247 SLDIFKILGE-KKFVLLLDDL 266 (896)
Q Consensus 247 ~~~l~~~l~~-kr~LlVlDdv 266 (896)
...+.+.+.. +.-+||+|.+
T Consensus 86 ~~~l~~~~~~~~~~lvVIDSi 106 (209)
T TIGR02237 86 IQKTSKFIDRDSASLVVVDSF 106 (209)
T ss_pred HHHHHHHHhhcCccEEEEeCc
Confidence 4444454543 4558888887
No 229
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.53 E-value=0.022 Score=58.02 Aligned_cols=90 Identities=16% Similarity=0.159 Sum_probs=55.2
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHhhhccCCCCC------CeEEEEEeCCccCHHHHHHHHHHhcCCCCc-------cccc
Q 002657 174 PAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDF------DCVIWVVVSKDLRLENIQEIIGGKIGLMNE-------SWKS 240 (896)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f------~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-------~~~~ 240 (896)
...++.|+|.+|+|||+||.+++.... ..- ..++|++....++...+. .+++..+.... -...
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~~---~~~~~~g~~~~v~yi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~ 93 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEAQ---LPGELGGLEGKVVYIDTEGAFRPERLV-QLAVRFGLDPEEVLDNIYVARP 93 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHhh---cccccCCCcceEEEEecCCCCCHHHHH-HHHHHhccchhhhhccEEEEeC
Confidence 567999999999999999999977641 222 567899887777665543 33333221110 0112
Q ss_pred cCHHHHHHHHHHHhC----CceEEEEEecCC
Q 002657 241 KSLQEKSLDIFKILG----EKKFVLLLDDLW 267 (896)
Q Consensus 241 ~~~~~~~~~l~~~l~----~kr~LlVlDdv~ 267 (896)
.+.++....+....+ .+.-++|+|.+.
T Consensus 94 ~~~~~~~~~l~~~~~~~~~~~~~lvVIDsis 124 (226)
T cd01393 94 YNGEQQLEIVEELERIMSSGRVDLVVVDSVA 124 (226)
T ss_pred CCHHHHHHHHHHHHHHhhcCCeeEEEEcCcc
Confidence 344444444444432 345588999983
No 230
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.52 E-value=0.027 Score=59.55 Aligned_cols=86 Identities=16% Similarity=0.141 Sum_probs=56.2
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHhcCCCCcc---ccccCHHHHHHHH
Q 002657 174 PAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDLRLENIQEIIGGKIGLMNES---WKSKSLQEKSLDI 250 (896)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l 250 (896)
.-+++-|+|++|+||||||.+++.... ..-..++||+....++.. .++.++...+. ....+.++....+
T Consensus 54 ~G~iteI~Gp~GsGKTtLal~~~~~~~---~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~ 125 (325)
T cd00983 54 KGRIIEIYGPESSGKTTLALHAIAEAQ---KLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIA 125 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---HcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHH
Confidence 567899999999999999999877652 234567899887766643 34455443211 1223445555555
Q ss_pred HHHhC-CceEEEEEecCC
Q 002657 251 FKILG-EKKFVLLLDDLW 267 (896)
Q Consensus 251 ~~~l~-~kr~LlVlDdv~ 267 (896)
...++ +..-++|+|.|-
T Consensus 126 ~~li~s~~~~lIVIDSva 143 (325)
T cd00983 126 DSLVRSGAVDLIVVDSVA 143 (325)
T ss_pred HHHHhccCCCEEEEcchH
Confidence 55544 456689999983
No 231
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.51 E-value=0.01 Score=60.34 Aligned_cols=88 Identities=22% Similarity=0.261 Sum_probs=51.7
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHh-cC---CCCccccccCHH---HH
Q 002657 174 PAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDLRLENIQEIIGGK-IG---LMNESWKSKSLQ---EK 246 (896)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~-l~---~~~~~~~~~~~~---~~ 246 (896)
...++.|+|.+|+|||++|.+++.... ..-..++|++.. .++...+. +++.. +. ....-....+.. +.
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~~~---~~~~~v~yi~~e-~~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVEAA---KNGKKVIYIDTE-GLSPERFK-QIAGEDFEELLSNIIIFEPSSFEEQSEA 96 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEEEECC-CCCHHHHH-HHHhhChHhHhhCeEEEeCCCHHHHHHH
Confidence 467999999999999999999988762 234678899887 55554432 23222 00 000000112222 22
Q ss_pred HHHHHHHhCCceEEEEEecC
Q 002657 247 SLDIFKILGEKKFVLLLDDL 266 (896)
Q Consensus 247 ~~~l~~~l~~kr~LlVlDdv 266 (896)
...+...++.+.-++|+|.+
T Consensus 97 i~~~~~~~~~~~~lvVIDsi 116 (225)
T PRK09361 97 IRKAEKLAKENVGLIVLDSA 116 (225)
T ss_pred HHHHHHHHHhcccEEEEeCc
Confidence 33344444456668888887
No 232
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=96.50 E-value=0.0072 Score=58.47 Aligned_cols=44 Identities=23% Similarity=0.265 Sum_probs=40.2
Q ss_pred ccchHHHHHHHHHHhccCCCeEEEEEcCCCchHHHHHHHHHhhh
Q 002657 156 VVGLQSQLEQVWRCLVEEPAGIVGLYGMGGVGKTTLLTHINNKF 199 (896)
Q Consensus 156 ~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (896)
+||-++.++.+.-...+++.+-+.|.||+|+||||-+..+++..
T Consensus 29 IVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~L 72 (333)
T KOG0991|consen 29 IVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLAREL 72 (333)
T ss_pred hhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHH
Confidence 89999999998888888889999999999999999999998876
No 233
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.49 E-value=0.0072 Score=55.30 Aligned_cols=113 Identities=21% Similarity=0.404 Sum_probs=45.2
Q ss_pred ccceEEEeeccccccccc--CCCCCCccEEecccccccccchhhhccCCCCcEEEccCCccccccc-ccccCCCCCCEEe
Q 002657 514 ENVSRLSLMQNRIKNLSE--IPKCPHLLTLFLNSNELKIITNDFFQFMPSLKVLSLSRNRRLTNLQ-LGISKLVSLQHLD 590 (896)
Q Consensus 514 ~~lr~L~l~~~~~~~l~~--~~~~~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~Ls~~~~i~~lp-~~i~~L~~L~~L~ 590 (896)
++++.+.+.. .+..+.. +..+++|+.+.+.++ +..++...|.+++.|+.+.+.++ +..++ ..+..+.+|+.++
T Consensus 12 ~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~ 87 (129)
T PF13306_consen 12 SNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPNN--LKSIGDNAFSNCTNLKNID 87 (129)
T ss_dssp TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETST--T-EE-TTTTTT-TTECEEE
T ss_pred CCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeeccccccccccccc--ccccccccccccccccccc
Confidence 3455555542 3444422 556666666666554 55666666666666666666542 33332 2344566666666
Q ss_pred ccCCCccccchh-hhcCCCCCEeeccccccccCCcHHHHhccccc
Q 002657 591 LSLTNIEKLSGE-LKALVNLKCLNLEYTWSLVTIPQQLIASFLRL 634 (896)
Q Consensus 591 Ls~~~i~~lp~~-l~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~L 634 (896)
+..+ +..++.. +.+. +|+.+.+..+ +..++...+.++++|
T Consensus 88 ~~~~-~~~i~~~~f~~~-~l~~i~~~~~--~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 88 IPSN-ITEIGSSSFSNC-NLKEINIPSN--ITKIEENAFKNCTKL 128 (129)
T ss_dssp ETTT--BEEHTTTTTT--T--EEE-TTB---SS----GGG-----
T ss_pred cCcc-ccEEchhhhcCC-CceEEEECCC--ccEECCccccccccC
Confidence 6543 4444332 4444 6666665542 445555545555544
No 234
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.48 E-value=0.012 Score=68.45 Aligned_cols=152 Identities=20% Similarity=0.268 Sum_probs=89.9
Q ss_pred ccchHHHHHHHHHHhccCCCeEEEEEcCCCchHHHHHHHHHhhhccCCCCC-----CeEEEEEeCCccCHHHHHHHHHHh
Q 002657 156 VVGLQSQLEQVWRCLVEEPAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDF-----DCVIWVVVSKDLRLENIQEIIGGK 230 (896)
Q Consensus 156 ~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f-----~~~~wv~~~~~~~~~~~~~~i~~~ 230 (896)
++||++|++++++.|....-.--.++|.+|+|||++|.-++.... .+.- +..++. .++..+
T Consensus 172 vIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv--~g~VP~~L~~~~i~s-----LD~g~L------- 237 (786)
T COG0542 172 VIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIV--NGDVPESLKDKRIYS-----LDLGSL------- 237 (786)
T ss_pred CcChHHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHHh--cCCCCHHHcCCEEEE-----ecHHHH-------
Confidence 899999999999999764333334689999999999998888752 2211 111111 011111
Q ss_pred cCCCCccccccCHHHHHHHHHHHhC-CceEEEEEecCCCcc----------ccccccccCCCCCCCCcEEEEecCCHHHH
Q 002657 231 IGLMNESWKSKSLQEKSLDIFKILG-EKKFVLLLDDLWQRV----------DLTKVGVPLPSPQSSASKVVFTTRSEEIC 299 (896)
Q Consensus 231 l~~~~~~~~~~~~~~~~~~l~~~l~-~kr~LlVlDdv~~~~----------~~~~l~~~~~~~~~~~s~iivTtR~~~v~ 299 (896)
... .. -..+.+++...+.+.++ .++.+|++|.+.... +-..+..|.. ..+ .-++|-.|...+.-
T Consensus 238 vAG--ak-yRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaL-ARG-eL~~IGATT~~EYR 312 (786)
T COG0542 238 VAG--AK-YRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPAL-ARG-ELRCIGATTLDEYR 312 (786)
T ss_pred hcc--cc-ccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHH-hcC-CeEEEEeccHHHHH
Confidence 111 11 23456666666666664 458999999996421 1222222221 122 24555555544432
Q ss_pred -------hhhccCcceeccCCChHhHHHHHHHHh
Q 002657 300 -------GLMEAQKKFKVACLSDKDAWELFCHKV 326 (896)
Q Consensus 300 -------~~~~~~~~~~l~~L~~~e~~~Lf~~~~ 326 (896)
......+.+.++..+.+++..+++-..
T Consensus 313 k~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk 346 (786)
T COG0542 313 KYIEKDAALERRFQKVLVDEPSVEDTIAILRGLK 346 (786)
T ss_pred HHhhhchHHHhcCceeeCCCCCHHHHHHHHHHHH
Confidence 222345688999999999999887654
No 235
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.47 E-value=0.027 Score=68.02 Aligned_cols=170 Identities=18% Similarity=0.229 Sum_probs=93.8
Q ss_pred ccchHHHHHHHHHHhcc-------------CCCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHH
Q 002657 156 VVGLQSQLEQVWRCLVE-------------EPAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDLRLEN 222 (896)
Q Consensus 156 ~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~ 222 (896)
+.|.+..+++|.+.+.- ...+-|.++|++|+|||++|+.+++.. ...| +.+.. .+
T Consensus 455 i~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~---~~~f-----i~v~~----~~ 522 (733)
T TIGR01243 455 IGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATES---GANF-----IAVRG----PE 522 (733)
T ss_pred cccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc---CCCE-----EEEeh----HH
Confidence 56888777777666531 134568899999999999999999976 2222 22221 11
Q ss_pred HHHHHHHhcCCCCccccccCHHHHHHHHHHHhCCceEEEEEecCCCcc--------c------cccccccCCC-CCCCCc
Q 002657 223 IQEIIGGKIGLMNESWKSKSLQEKSLDIFKILGEKKFVLLLDDLWQRV--------D------LTKVGVPLPS-PQSSAS 287 (896)
Q Consensus 223 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~--------~------~~~l~~~~~~-~~~~~s 287 (896)
++ .. +...+...+...+...-+..+.+|++|+++... . ...+...+.. ....+.
T Consensus 523 l~----~~-------~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v 591 (733)
T TIGR01243 523 IL----SK-------WVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNV 591 (733)
T ss_pred Hh----hc-------ccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCE
Confidence 11 11 011222223333333335678999999985310 0 0111111110 122344
Q ss_pred EEEEecCCHHHHh--hh---ccCcceeccCCChHhHHHHHHHHhcCcccCCCCChHHHHHHHHHHhCCCc
Q 002657 288 KVVFTTRSEEICG--LM---EAQKKFKVACLSDKDAWELFCHKVGEETLNNHPDIPELAQTVAKECGGMP 352 (896)
Q Consensus 288 ~iivTtR~~~v~~--~~---~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~GlP 352 (896)
.||.||...+... .. .-+..+.+...+.++-.++|............-+ ...+++.+.|.-
T Consensus 592 ~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~----l~~la~~t~g~s 657 (733)
T TIGR01243 592 VVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVD----LEELAEMTEGYT 657 (733)
T ss_pred EEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCC----HHHHHHHcCCCC
Confidence 5666776554321 11 2345788888888888889877654433222222 356777777754
No 236
>PRK06526 transposase; Provisional
Probab=96.45 E-value=0.0026 Score=65.31 Aligned_cols=26 Identities=27% Similarity=0.249 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHhhh
Q 002657 174 PAGIVGLYGMGGVGKTTLLTHINNKF 199 (896)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (896)
....+.++|++|+|||+||..+....
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a 122 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRA 122 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHH
Confidence 34568999999999999999998876
No 237
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.45 E-value=0.012 Score=60.48 Aligned_cols=74 Identities=23% Similarity=0.316 Sum_probs=47.0
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHH
Q 002657 174 PAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDLRLENIQEIIGGKIGLMNESWKSKSLQEKSLDIFKI 253 (896)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 253 (896)
+..-+.++|.+|+|||.||.++.++.. +..+ .+.++ +..++..++....... ....++.+.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~--~~g~-sv~f~------~~~el~~~Lk~~~~~~----------~~~~~l~~~ 164 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELL--KAGI-SVLFI------TAPDLLSKLKAAFDEG----------RLEEKLLRE 164 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHH--HcCC-eEEEE------EHHHHHHHHHHHHhcC----------chHHHHHHH
Confidence 667789999999999999999999982 3333 34555 3456666666654321 111222222
Q ss_pred hCCceEEEEEecCC
Q 002657 254 LGEKKFVLLLDDLW 267 (896)
Q Consensus 254 l~~kr~LlVlDdv~ 267 (896)
+. +-=||||||+-
T Consensus 165 l~-~~dlLIiDDlG 177 (254)
T COG1484 165 LK-KVDLLIIDDIG 177 (254)
T ss_pred hh-cCCEEEEeccc
Confidence 22 22389999994
No 238
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.43 E-value=0.013 Score=60.05 Aligned_cols=92 Identities=20% Similarity=0.257 Sum_probs=55.0
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHhhhccCCC----CCCeEEEEEeCCccCHHHHHHHHHHhcCCCCcc-------ccccC
Q 002657 174 PAGIVGLYGMGGVGKTTLLTHINNKFLQVPN----DFDCVIWVVVSKDLRLENIQEIIGGKIGLMNES-------WKSKS 242 (896)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-------~~~~~ 242 (896)
...++.|+|.+|+|||++|.+++... .... ....++|++....++...+. ++++..+..... ....+
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~-~~~~~~~g~~~~viyi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~~~ 95 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTV-QLPIELGGLEGKAVYIDTEGTFRPERLV-QIAERFGLDPEEVLDNIYVARAYN 95 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHe-eCccccCCCCccEEEEeCCCCcCHHHHH-HHHHHhccChHhHhcCEEEEecCC
Confidence 56799999999999999999997553 1122 13678999988877655443 333443322110 01112
Q ss_pred HH---HHHHHHHHHhC-C-ceEEEEEecCC
Q 002657 243 LQ---EKSLDIFKILG-E-KKFVLLLDDLW 267 (896)
Q Consensus 243 ~~---~~~~~l~~~l~-~-kr~LlVlDdv~ 267 (896)
.. .....+.+.+. . +.-+||+|.+.
T Consensus 96 ~~~l~~~l~~l~~~l~~~~~~~liVIDSis 125 (235)
T cd01123 96 SDHQLQLLEELEAILIESSRIKLVIVDSVT 125 (235)
T ss_pred HHHHHHHHHHHHHHHhhcCCeeEEEEeCcH
Confidence 22 23344444443 3 56688889883
No 239
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.42 E-value=0.039 Score=61.99 Aligned_cols=161 Identities=18% Similarity=0.204 Sum_probs=88.8
Q ss_pred chHHHHHHHHHHhcc-------------CCCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHH
Q 002657 158 GLQSQLEQVWRCLVE-------------EPAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDLRLENIQ 224 (896)
Q Consensus 158 Gr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 224 (896)
|.++.+.+|.+.+.- ...+-|..+|+||+|||++|+.+++.. ...| +.+..+ +++
T Consensus 438 GlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~---~~nF-----lsvkgp----EL~ 505 (693)
T KOG0730|consen 438 GLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEA---GMNF-----LSVKGP----ELF 505 (693)
T ss_pred CHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhh---cCCe-----eeccCH----HHH
Confidence 466666666655432 256778899999999999999999976 3333 333221 111
Q ss_pred HHHHHhcCCCCccccccCHHHHHHHHHHHhCCceEEEEEecCCCccc-------------cccccccCCC-CCCCCcEEE
Q 002657 225 EIIGGKIGLMNESWKSKSLQEKSLDIFKILGEKKFVLLLDDLWQRVD-------------LTKVGVPLPS-PQSSASKVV 290 (896)
Q Consensus 225 ~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~-------------~~~l~~~~~~-~~~~~s~ii 290 (896)
. . |-..++..+...+.+.-+--+.++.||.++.... +..+..-+.. ...++--||
T Consensus 506 s----k-------~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~Vi 574 (693)
T KOG0730|consen 506 S----K-------YVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVI 574 (693)
T ss_pred H----H-------hcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEE
Confidence 1 0 1223344444444455556678999999853210 1112122210 011222333
Q ss_pred EecCCHHH--Hhhhc---cCcceeccCCChHhHHHHHHHHhcCcccCCCCChHHHH
Q 002657 291 FTTRSEEI--CGLME---AQKKFKVACLSDKDAWELFCHKVGEETLNNHPDIPELA 341 (896)
Q Consensus 291 vTtR~~~v--~~~~~---~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~ 341 (896)
-.|..++. ...+. -+..+.++.-+.+.-.++|+.++........-++++++
T Consensus 575 AATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La 630 (693)
T KOG0730|consen 575 AATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELA 630 (693)
T ss_pred eccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHH
Confidence 34433333 12233 34567787777788889999999776644444454443
No 240
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.39 E-value=0.07 Score=57.83 Aligned_cols=40 Identities=20% Similarity=0.443 Sum_probs=33.4
Q ss_pred HHHHHHHHHHhcc---CCCeEEEEEcCCCchHHHHHHHHHhhh
Q 002657 160 QSQLEQVWRCLVE---EPAGIVGLYGMGGVGKTTLLTHINNKF 199 (896)
Q Consensus 160 ~~~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (896)
+.-.+.|.+.+.+ +...+|+|.|.=|+||||+.+.+.+..
T Consensus 2 ~~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L 44 (325)
T PF07693_consen 2 KPYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEEL 44 (325)
T ss_pred hHHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4456677777765 467899999999999999999999988
No 241
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.39 E-value=0.0095 Score=57.49 Aligned_cols=125 Identities=14% Similarity=0.124 Sum_probs=65.2
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHhhhccC--CC---CCC--eEEEEEeCCccCHHHHHHHHHHhcCCCCc----cccccC
Q 002657 174 PAGIVGLYGMGGVGKTTLLTHINNKFLQV--PN---DFD--CVIWVVVSKDLRLENIQEIIGGKIGLMNE----SWKSKS 242 (896)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~---~f~--~~~wv~~~~~~~~~~~~~~i~~~l~~~~~----~~~~~~ 242 (896)
.-.+++|+|+.|+|||||.+.+..+..++ .. .|. .+.|+ .+ .+.++.++.... .....+
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~--~q--------~~~l~~~~L~~~~~~~~~~~LS 89 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFI--DQ--------LQFLIDVGLGYLTLGQKLSTLS 89 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEE--hH--------HHHHHHcCCCccccCCCcCcCC
Confidence 45789999999999999999986431111 11 111 12232 22 345566654321 111122
Q ss_pred H-HHHHHHHHHHhCCc--eEEEEEecCCCcc---ccccccccCCCCCCCCcEEEEecCCHHHHhhhccCcceec
Q 002657 243 L-QEKSLDIFKILGEK--KFVLLLDDLWQRV---DLTKVGVPLPSPQSSASKVVFTTRSEEICGLMEAQKKFKV 310 (896)
Q Consensus 243 ~-~~~~~~l~~~l~~k--r~LlVlDdv~~~~---~~~~l~~~~~~~~~~~s~iivTtR~~~v~~~~~~~~~~~l 310 (896)
. +...-.+...+-.+ +-++++|+.-..- ..+.+...+......|..||++|.+.+.... .+..+.+
T Consensus 90 gGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~~--~d~i~~l 161 (176)
T cd03238 90 GGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLSS--ADWIIDF 161 (176)
T ss_pred HHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh--CCEEEEE
Confidence 1 22223345555556 6788899984332 2222222222111246778888888876532 4444444
No 242
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=96.38 E-value=0.045 Score=53.87 Aligned_cols=55 Identities=31% Similarity=0.456 Sum_probs=42.6
Q ss_pred cccccCCCCCc--ccchHHHHHHHHHHhcc-------------CCCeEEEEEcCCCchHHHHHHHHHhhh
Q 002657 145 SVADERPTEPI--VVGLQSQLEQVWRCLVE-------------EPAGIVGLYGMGGVGKTTLLTHINNKF 199 (896)
Q Consensus 145 ~~~~~~~~~~~--~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (896)
..++++|++.+ +=|.++.++++++.+.= ...+-+..+|++|.|||-+|++.+..-
T Consensus 160 MevDekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT 229 (424)
T KOG0652|consen 160 MEVDEKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQT 229 (424)
T ss_pred eeeccCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhc
Confidence 34567777664 56899999999998741 145678899999999999999987654
No 243
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.38 E-value=0.0084 Score=63.28 Aligned_cols=86 Identities=15% Similarity=0.150 Sum_probs=56.5
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHhcCCCCcc---ccccCHHHHHHHH
Q 002657 174 PAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDLRLENIQEIIGGKIGLMNES---WKSKSLQEKSLDI 250 (896)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l 250 (896)
.-+++-|+|++|+||||||.+++.... ..-..++|++..+.++.. .+++++...+. ......++....+
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~~---~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~ 125 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEAQ---KAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIA 125 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---HcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 567999999999999999999877662 233567888777665543 35555543221 1223445555555
Q ss_pred HHHhC-CceEEEEEecCC
Q 002657 251 FKILG-EKKFVLLLDDLW 267 (896)
Q Consensus 251 ~~~l~-~kr~LlVlDdv~ 267 (896)
...++ +..-++|+|.|-
T Consensus 126 ~~li~~~~~~lIVIDSv~ 143 (321)
T TIGR02012 126 ETLVRSGAVDIIVVDSVA 143 (321)
T ss_pred HHHhhccCCcEEEEcchh
Confidence 55553 456689999984
No 244
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.37 E-value=0.024 Score=57.37 Aligned_cols=43 Identities=16% Similarity=0.203 Sum_probs=32.8
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCccC
Q 002657 174 PAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDLR 219 (896)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~ 219 (896)
.-+++.|.|.+|+||||+|.+++.... ..-..++|++....+.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~~~---~~g~~v~yi~~e~~~~ 60 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVETA---GQGKKVAYIDTEGLSS 60 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---hcCCeEEEEECCCCCH
Confidence 568999999999999999999988762 2334677887655443
No 245
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.36 E-value=0.035 Score=61.53 Aligned_cols=154 Identities=17% Similarity=0.227 Sum_probs=89.2
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHH
Q 002657 174 PAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDLRLENIQEIIGGKIGLMNESWKSKSLQEKSLDIFKI 253 (896)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 253 (896)
...-|.++|++|+|||-||++|++.. +..| ++|-.+ +++... -..++......+.+.
T Consensus 544 ~PsGvLL~GPPGCGKTLlAKAVANEa---g~NF-----isVKGP----ELlNkY-----------VGESErAVR~vFqRA 600 (802)
T KOG0733|consen 544 APSGVLLCGPPGCGKTLLAKAVANEA---GANF-----ISVKGP----ELLNKY-----------VGESERAVRQVFQRA 600 (802)
T ss_pred CCCceEEeCCCCccHHHHHHHHhhhc---cCce-----EeecCH----HHHHHH-----------hhhHHHHHHHHHHHh
Confidence 34568899999999999999999986 3343 444432 222111 122333333444444
Q ss_pred hCCceEEEEEecCCCc-------cc------cccccccCCC-CCCCCcEEEEecCCHHHHh--hhc---cCcceeccCCC
Q 002657 254 LGEKKFVLLLDDLWQR-------VD------LTKVGVPLPS-PQSSASKVVFTTRSEEICG--LME---AQKKFKVACLS 314 (896)
Q Consensus 254 l~~kr~LlVlDdv~~~-------~~------~~~l~~~~~~-~~~~~s~iivTtR~~~v~~--~~~---~~~~~~l~~L~ 314 (896)
-..-+++|.||.++.. .. ..++..-+.. ....|--||-.|..+++.. .+. -+....++.-+
T Consensus 601 R~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn 680 (802)
T KOG0733|consen 601 RASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPN 680 (802)
T ss_pred hcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCC
Confidence 4568999999999631 11 1122222210 2345667777777666521 122 24567778888
Q ss_pred hHhHHHHHHHHhcC--cccCCCCChHHHHHHHHHHhCCCc
Q 002657 315 DKDAWELFCHKVGE--ETLNNHPDIPELAQTVAKECGGMP 352 (896)
Q Consensus 315 ~~e~~~Lf~~~~~~--~~~~~~~~~~~~~~~i~~~~~GlP 352 (896)
.+|-.++++..... .....+-++.++++. .+|.|.-
T Consensus 681 ~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~--~~c~gft 718 (802)
T KOG0733|consen 681 AEERVAILKTITKNTKPPLSSDVDLDEIARN--TKCEGFT 718 (802)
T ss_pred HHHHHHHHHHHhccCCCCCCcccCHHHHhhc--ccccCCc
Confidence 88888999888863 222334456555543 2555543
No 246
>PRK04132 replication factor C small subunit; Provisional
Probab=96.36 E-value=0.048 Score=65.06 Aligned_cols=152 Identities=14% Similarity=0.067 Sum_probs=90.1
Q ss_pred CCCchHHHHHHHHHhhhccCCCCC-CeEEEEEeCCccCHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHhCCceEEE
Q 002657 183 MGGVGKTTLLTHINNKFLQVPNDF-DCVIWVVVSKDLRLENIQEIIGGKIGLMNESWKSKSLQEKSLDIFKILGEKKFVL 261 (896)
Q Consensus 183 ~gGiGKTtLa~~v~~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~Ll 261 (896)
|.++||||+|..++++.- ...+ ..++-++.++......+...+-+...... . -..+.-++
T Consensus 574 Ph~lGKTT~A~ala~~l~--g~~~~~~~lElNASd~rgid~IR~iIk~~a~~~~-----~------------~~~~~KVv 634 (846)
T PRK04132 574 PTVLHNTTAALALARELF--GENWRHNFLELNASDERGINVIREKVKEFARTKP-----I------------GGASFKII 634 (846)
T ss_pred CCcccHHHHHHHHHHhhh--cccccCeEEEEeCCCcccHHHHHHHHHHHHhcCC-----c------------CCCCCEEE
Confidence 778999999999998851 1222 23566777765555443322222111100 0 01245799
Q ss_pred EEecCCCcc--ccccccccCCCCCCCCcEEEEecCCH-HHH-hhhccCcceeccCCChHhHHHHHHHHhcCcccCCCCCh
Q 002657 262 LLDDLWQRV--DLTKVGVPLPSPQSSASKVVFTTRSE-EIC-GLMEAQKKFKVACLSDKDAWELFCHKVGEETLNNHPDI 337 (896)
Q Consensus 262 VlDdv~~~~--~~~~l~~~~~~~~~~~s~iivTtR~~-~v~-~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~ 337 (896)
|+|+++... ....+...+. .....+++|++|.+. .+. ...+....+++.+++.++..+.+...+....... -
T Consensus 635 IIDEaD~Lt~~AQnALLk~lE-ep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~i---~ 710 (846)
T PRK04132 635 FLDEADALTQDAQQALRRTME-MFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLEL---T 710 (846)
T ss_pred EEECcccCCHHHHHHHHHHhh-CCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCCC---C
Confidence 999997543 3444443333 223455666555544 332 2233457899999999999988887665432111 1
Q ss_pred HHHHHHHHHHhCCCchHHHH
Q 002657 338 PELAQTVAKECGGMPLALIT 357 (896)
Q Consensus 338 ~~~~~~i~~~~~GlPlai~~ 357 (896)
.+....|++.++|.+..+..
T Consensus 711 ~e~L~~Ia~~s~GDlR~AIn 730 (846)
T PRK04132 711 EEGLQAILYIAEGDMRRAIN 730 (846)
T ss_pred HHHHHHHHHHcCCCHHHHHH
Confidence 45688999999998855433
No 247
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=96.35 E-value=0.019 Score=64.14 Aligned_cols=184 Identities=14% Similarity=0.140 Sum_probs=105.3
Q ss_pred ccchHHHHHHHHHHhccCCC-eEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHhcCCC
Q 002657 156 VVGLQSQLEQVWRCLVEEPA-GIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDLRLENIQEIIGGKIGLM 234 (896)
Q Consensus 156 ~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 234 (896)
+||.+.....|...+..+.. .-....|+-|+||||+|+-++....-.. + ....+......-++|...-...
T Consensus 18 vvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~-------~-~~~ePC~~C~~Ck~I~~g~~~D 89 (515)
T COG2812 18 VVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCEN-------G-PTAEPCGKCISCKEINEGSLID 89 (515)
T ss_pred hcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCCC-------C-CCCCcchhhhhhHhhhcCCccc
Confidence 79999999999999987643 3455689999999999999988762111 0 1111111122222222210000
Q ss_pred C---ccccccCHHHHHHHHHHHh-----CCceEEEEEecCC--CccccccccccCCCCCCCCcEEEEecCCHH-H-Hhhh
Q 002657 235 N---ESWKSKSLQEKSLDIFKIL-----GEKKFVLLLDDLW--QRVDLTKVGVPLPSPQSSASKVVFTTRSEE-I-CGLM 302 (896)
Q Consensus 235 ~---~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~--~~~~~~~l~~~~~~~~~~~s~iivTtR~~~-v-~~~~ 302 (896)
. +.-.....++ ...|.+.. +++.=+.|+|+|+ +...|..+..-+. ....+.+.|+.|++.+ + ....
T Consensus 90 viEiDaASn~gVdd-iR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLE-EPP~hV~FIlATTe~~Kip~TIl 167 (515)
T COG2812 90 VIEIDAASNTGVDD-IREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLE-EPPSHVKFILATTEPQKIPNTIL 167 (515)
T ss_pred chhhhhhhccChHH-HHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccc-cCccCeEEEEecCCcCcCchhhh
Confidence 0 0000111111 12222222 2344588999996 3455665554443 2334555666665543 3 3444
Q ss_pred ccCcceeccCCChHhHHHHHHHHhcCcccCCCCChHHHHHHHHHHhCCCc
Q 002657 303 EAQKKFKVACLSDKDAWELFCHKVGEETLNNHPDIPELAQTVAKECGGMP 352 (896)
Q Consensus 303 ~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~GlP 352 (896)
+..+.|.++.++.++-...+...+.......+ .+....|++..+|..
T Consensus 168 SRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e---~~aL~~ia~~a~Gs~ 214 (515)
T COG2812 168 SRCQRFDFKRLDLEEIAKHLAAILDKEGINIE---EDALSLIARAAEGSL 214 (515)
T ss_pred hccccccccCCCHHHHHHHHHHHHHhcCCccC---HHHHHHHHHHcCCCh
Confidence 55678999999999999999888876553322 445666777776644
No 248
>PRK10867 signal recognition particle protein; Provisional
Probab=96.34 E-value=0.11 Score=57.57 Aligned_cols=26 Identities=27% Similarity=0.530 Sum_probs=23.1
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHhhh
Q 002657 174 PAGIVGLYGMGGVGKTTLLTHINNKF 199 (896)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (896)
...+|.++|.+|+||||.+..++..+
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l 124 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYL 124 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 46899999999999999999888766
No 249
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.33 E-value=0.016 Score=59.74 Aligned_cols=92 Identities=22% Similarity=0.288 Sum_probs=55.5
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHhhhc-c--CCCCCCeEEEEEeCCccCHHHHHHHHHHhcCCCCcc-------ccccCH
Q 002657 174 PAGIVGLYGMGGVGKTTLLTHINNKFL-Q--VPNDFDCVIWVVVSKDLRLENIQEIIGGKIGLMNES-------WKSKSL 243 (896)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~-~--~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-------~~~~~~ 243 (896)
...+.=|+|.+|+|||.|+.+++-... . ..+.-..++|++-...++...+. +|++..+...+. ....+.
T Consensus 37 ~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~~~~~~~l~~I~v~~~~~~ 115 (256)
T PF08423_consen 37 TGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFGLDPEEILDNIFVIRVFDL 115 (256)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTTS-HHHHHHTEEEEE-SSH
T ss_pred CCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccccccchhhhceeeeecCCH
Confidence 456889999999999999998865431 0 11223469999999989887775 466665433211 011223
Q ss_pred HHHH---HHHHHHh-CCceEEEEEecC
Q 002657 244 QEKS---LDIFKIL-GEKKFVLLLDDL 266 (896)
Q Consensus 244 ~~~~---~~l~~~l-~~kr~LlVlDdv 266 (896)
+++. ..+...+ +.+--|||+|.+
T Consensus 116 ~~l~~~L~~l~~~l~~~~ikLIVIDSI 142 (256)
T PF08423_consen 116 EELLELLEQLPKLLSESKIKLIVIDSI 142 (256)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETS
T ss_pred HHHHHHHHHHHhhccccceEEEEecch
Confidence 3332 2333333 234458899988
No 250
>PRK06762 hypothetical protein; Provisional
Probab=96.29 E-value=0.059 Score=51.77 Aligned_cols=24 Identities=25% Similarity=0.535 Sum_probs=22.1
Q ss_pred eEEEEEcCCCchHHHHHHHHHhhh
Q 002657 176 GIVGLYGMGGVGKTTLLTHINNKF 199 (896)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~v~~~~ 199 (896)
.+|.|.|++|+||||+|+.+.+..
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 689999999999999999999875
No 251
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.27 E-value=0.025 Score=60.01 Aligned_cols=91 Identities=18% Similarity=0.253 Sum_probs=57.0
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHhhhccCC----CCCCeEEEEEeCCccCHHHHHHHHHHhcCCCCccc-------cccC
Q 002657 174 PAGIVGLYGMGGVGKTTLLTHINNKFLQVP----NDFDCVIWVVVSKDLRLENIQEIIGGKIGLMNESW-------KSKS 242 (896)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~-------~~~~ 242 (896)
..+++-|+|++|+|||+|+.+++-.. ... ..-..++||+....+++.++. ++++.++...+.. ...+
T Consensus 95 ~G~iteI~G~~GsGKTql~lqla~~~-~~~~~~gg~~~~vvYIdtE~~f~~eRi~-~~a~~~g~d~~~~l~~i~~~~~~~ 172 (313)
T TIGR02238 95 SMSITEVFGEFRCGKTQLSHTLCVTA-QLPREMGGGNGKVAYIDTEGTFRPDRIR-AIAERFGVDPDAVLDNILYARAYT 172 (313)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHH-hcchhhcCCCCeEEEEEcCCCCCHHHHH-HHHHHcCCChHHhcCcEEEecCCC
Confidence 56788899999999999999876433 111 122478999999888888875 4666666533210 1112
Q ss_pred HHHHH---HHHHHHhC-CceEEEEEecC
Q 002657 243 LQEKS---LDIFKILG-EKKFVLLLDDL 266 (896)
Q Consensus 243 ~~~~~---~~l~~~l~-~kr~LlVlDdv 266 (896)
.++.. ..+...+. ++.-|||+|.+
T Consensus 173 ~e~~~~~l~~l~~~i~~~~~~LvVIDSi 200 (313)
T TIGR02238 173 SEHQMELLDYLAAKFSEEPFRLLIVDSI 200 (313)
T ss_pred HHHHHHHHHHHHHHhhccCCCEEEEEcc
Confidence 33322 33333333 34457899987
No 252
>PRK09354 recA recombinase A; Provisional
Probab=96.25 E-value=0.012 Score=62.69 Aligned_cols=86 Identities=16% Similarity=0.143 Sum_probs=57.6
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHhcCCCCcc---ccccCHHHHHHHH
Q 002657 174 PAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDLRLENIQEIIGGKIGLMNES---WKSKSLQEKSLDI 250 (896)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l 250 (896)
.-+++-|+|++|+||||||.+++.... ..-..++||+....++.. .+++++...+. ......++....+
T Consensus 59 ~G~IteI~G~~GsGKTtLal~~~~~~~---~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~ 130 (349)
T PRK09354 59 RGRIVEIYGPESSGKTTLALHAIAEAQ---KAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIA 130 (349)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---HcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 567999999999999999999887652 334677899888777653 45555543221 1223445555555
Q ss_pred HHHhC-CceEEEEEecCC
Q 002657 251 FKILG-EKKFVLLLDDLW 267 (896)
Q Consensus 251 ~~~l~-~kr~LlVlDdv~ 267 (896)
...++ +..-+||+|-|-
T Consensus 131 ~~li~s~~~~lIVIDSva 148 (349)
T PRK09354 131 DTLVRSGAVDLIVVDSVA 148 (349)
T ss_pred HHHhhcCCCCEEEEeChh
Confidence 55554 456689999984
No 253
>PRK06696 uridine kinase; Validated
Probab=96.24 E-value=0.0062 Score=61.80 Aligned_cols=42 Identities=14% Similarity=0.250 Sum_probs=35.6
Q ss_pred chHHHHHHHHHHhcc---CCCeEEEEEcCCCchHHHHHHHHHhhh
Q 002657 158 GLQSQLEQVWRCLVE---EPAGIVGLYGMGGVGKTTLLTHINNKF 199 (896)
Q Consensus 158 Gr~~~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (896)
.|++.+++|.+.+.. +...+|+|.|.+|+||||+|+.+.+..
T Consensus 2 ~~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l 46 (223)
T PRK06696 2 SRKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEI 46 (223)
T ss_pred cHHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 366777888887753 467899999999999999999999887
No 254
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.21 E-value=0.05 Score=58.19 Aligned_cols=68 Identities=9% Similarity=0.066 Sum_probs=37.7
Q ss_pred ceEEEEEecCCCc--cccccccccCCCCCCCCcEEEEecCCHH-HHhh-hccCcceeccCCChHhHHHHHHHH
Q 002657 257 KKFVLLLDDLWQR--VDLTKVGVPLPSPQSSASKVVFTTRSEE-ICGL-MEAQKKFKVACLSDKDAWELFCHK 325 (896)
Q Consensus 257 kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~~s~iivTtR~~~-v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~ 325 (896)
++=++|+|++... ..-..+...+. ....+..+|++|.+.. +... .+....+.+.+++.+++.+.+.+.
T Consensus 113 ~~kV~iiEp~~~Ld~~a~naLLk~LE-ep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~ 184 (325)
T PRK08699 113 GLRVILIHPAESMNLQAANSLLKVLE-EPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRER 184 (325)
T ss_pred CceEEEEechhhCCHHHHHHHHHHHH-hCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhc
Confidence 3345566777532 22222222222 1123455666666654 3322 233567899999999998888653
No 255
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.18 E-value=0.029 Score=57.10 Aligned_cols=87 Identities=18% Similarity=0.235 Sum_probs=50.1
Q ss_pred HHHHHHHhcc--CCCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHhcCCCCccccc
Q 002657 163 LEQVWRCLVE--EPAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDLRLENIQEIIGGKIGLMNESWKS 240 (896)
Q Consensus 163 ~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~ 240 (896)
+..+.++... .....+.++|.+|+|||+||..+++... ..-..+++++ ..++...+-..... ..
T Consensus 85 l~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~---~~g~~v~~it------~~~l~~~l~~~~~~-----~~ 150 (244)
T PRK07952 85 LSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELL---LRGKSVLIIT------VADIMSAMKDTFSN-----SE 150 (244)
T ss_pred HHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHH---hcCCeEEEEE------HHHHHHHHHHHHhh-----cc
Confidence 3444444432 2345788999999999999999999873 2223456663 34555554443321 11
Q ss_pred cCHHHHHHHHHHHhCCceEEEEEecCCC
Q 002657 241 KSLQEKSLDIFKILGEKKFVLLLDDLWQ 268 (896)
Q Consensus 241 ~~~~~~~~~l~~~l~~kr~LlVlDdv~~ 268 (896)
.... .+.+.+. +.=+|||||+..
T Consensus 151 ~~~~----~~l~~l~-~~dlLvIDDig~ 173 (244)
T PRK07952 151 TSEE----QLLNDLS-NVDLLVIDEIGV 173 (244)
T ss_pred ccHH----HHHHHhc-cCCEEEEeCCCC
Confidence 1122 2333344 344888999953
No 256
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.17 E-value=0.017 Score=70.59 Aligned_cols=44 Identities=32% Similarity=0.443 Sum_probs=37.5
Q ss_pred ccchHHHHHHHHHHhccC---------CCeEEEEEcCCCchHHHHHHHHHhhh
Q 002657 156 VVGLQSQLEQVWRCLVEE---------PAGIVGLYGMGGVGKTTLLTHINNKF 199 (896)
Q Consensus 156 ~vGr~~~~~~l~~~L~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (896)
++|.+..++.+.+.+... ...++.++|++|+|||++|+.++...
T Consensus 567 v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l 619 (852)
T TIGR03346 567 VVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFL 619 (852)
T ss_pred cCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 789999999999888641 24578899999999999999999876
No 257
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.15 E-value=0.0048 Score=57.37 Aligned_cols=42 Identities=33% Similarity=0.329 Sum_probs=31.3
Q ss_pred EEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHH
Q 002657 178 VGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDLRLENIQE 225 (896)
Q Consensus 178 i~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 225 (896)
|.++|++|+|||+||+.+++.. . ....-+.++...+..++..
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~---~---~~~~~i~~~~~~~~~dl~g 43 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL---G---RPVIRINCSSDTTEEDLIG 43 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH---T---CEEEEEE-TTTSTHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHh---h---cceEEEEecccccccccee
Confidence 6789999999999999999876 1 2334567777777776654
No 258
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.15 E-value=0.01 Score=71.98 Aligned_cols=44 Identities=30% Similarity=0.450 Sum_probs=37.2
Q ss_pred ccchHHHHHHHHHHhcc---------CCCeEEEEEcCCCchHHHHHHHHHhhh
Q 002657 156 VVGLQSQLEQVWRCLVE---------EPAGIVGLYGMGGVGKTTLLTHINNKF 199 (896)
Q Consensus 156 ~vGr~~~~~~l~~~L~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (896)
++|.+..++.+.+.+.. ....++.++|+.|+|||.+|+.++...
T Consensus 568 v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l 620 (852)
T TIGR03345 568 VIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELL 620 (852)
T ss_pred EcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 78999999999888742 134578999999999999999998876
No 259
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.10 E-value=0.037 Score=61.35 Aligned_cols=89 Identities=19% Similarity=0.176 Sum_probs=51.3
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCc-cCHHHHHHHHHHhcCCCCccc-cccCHHHHHHHHH
Q 002657 174 PAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKD-LRLENIQEIIGGKIGLMNESW-KSKSLQEKSLDIF 251 (896)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~l~ 251 (896)
...+|.++|.+|+||||+|..++..+ . +..+ .+..|++... ....+.++.++++++.+.... ...+.........
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L-~-~~g~-kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al 170 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYF-K-KKGL-KVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGL 170 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH-H-HcCC-eEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHH
Confidence 46799999999999999999999887 3 2223 3444444321 123455666777776543211 1122333333333
Q ss_pred HHhCCceEEEEEecC
Q 002657 252 KILGEKKFVLLLDDL 266 (896)
Q Consensus 252 ~~l~~kr~LlVlDdv 266 (896)
+..++. =+||+|..
T Consensus 171 ~~~~~~-DvVIIDTA 184 (437)
T PRK00771 171 EKFKKA-DVIIVDTA 184 (437)
T ss_pred HHhhcC-CEEEEECC
Confidence 333343 46777776
No 260
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=96.09 E-value=0.0028 Score=58.79 Aligned_cols=43 Identities=23% Similarity=0.305 Sum_probs=31.5
Q ss_pred cchHHHHHHHHHHhcc--CCCeEEEEEcCCCchHHHHHHHHHhhh
Q 002657 157 VGLQSQLEQVWRCLVE--EPAGIVGLYGMGGVGKTTLLTHINNKF 199 (896)
Q Consensus 157 vGr~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (896)
||....++++.+.+.. ....-|.|+|..|+||+++|+.++..-
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~ 45 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYS 45 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTT
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhc
Confidence 4666666777666654 445667899999999999999998875
No 261
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.08 E-value=0.007 Score=60.01 Aligned_cols=110 Identities=13% Similarity=0.115 Sum_probs=60.7
Q ss_pred eEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHH-HHHHHHHHhcCCCCccccccCHHHHHHHHHHHh
Q 002657 176 GIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDLRLE-NIQEIIGGKIGLMNESWKSKSLQEKSLDIFKIL 254 (896)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~-~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 254 (896)
.+|.|.|+.|+||||+++.+.... .......+++ +.++.... .-...+..+-. ...+.......++..+
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~---~~~~~~~i~t-~e~~~E~~~~~~~~~i~q~~------vg~~~~~~~~~i~~aL 71 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYI---NKNKTHHILT-IEDPIEFVHESKRSLINQRE------VGLDTLSFENALKAAL 71 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh---hhcCCcEEEE-EcCCccccccCccceeeecc------cCCCccCHHHHHHHHh
Confidence 578999999999999999988776 2233333332 22211100 00000111100 0111223455677777
Q ss_pred CCceEEEEEecCCCccccccccccCCCCCCCCcEEEEecCCHHHH
Q 002657 255 GEKKFVLLLDDLWQRVDLTKVGVPLPSPQSSASKVVFTTRSEEIC 299 (896)
Q Consensus 255 ~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~~~s~iivTtR~~~v~ 299 (896)
+..+=++++|++.+.+....+... ...|..++.|+....+.
T Consensus 72 r~~pd~ii~gEird~e~~~~~l~~----a~~G~~v~~t~Ha~~~~ 112 (198)
T cd01131 72 RQDPDVILVGEMRDLETIRLALTA----AETGHLVMSTLHTNSAA 112 (198)
T ss_pred cCCcCEEEEcCCCCHHHHHHHHHH----HHcCCEEEEEecCCcHH
Confidence 777889999999766554433222 22455678887766543
No 262
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.05 E-value=0.015 Score=56.60 Aligned_cols=36 Identities=22% Similarity=0.472 Sum_probs=28.6
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEE
Q 002657 174 PAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWV 212 (896)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv 212 (896)
+..+|.+.|+.|+||||+|+.+++.. ...+..++++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l---~~~~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERL---KLKYSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH---HHcCCcEEEE
Confidence 45689999999999999999999987 3345555555
No 263
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.02 E-value=0.035 Score=53.08 Aligned_cols=39 Identities=23% Similarity=0.419 Sum_probs=30.1
Q ss_pred EEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCcc
Q 002657 177 IVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDL 218 (896)
Q Consensus 177 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~ 218 (896)
++.|+|.+|+||||++..+..... ..-..++|+......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~---~~~~~v~~~~~e~~~ 39 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIA---TKGGKVVYVDIEEEI 39 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHH---hcCCEEEEEECCcch
Confidence 468999999999999999988862 234567787776543
No 264
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.02 E-value=0.017 Score=70.40 Aligned_cols=44 Identities=25% Similarity=0.400 Sum_probs=36.3
Q ss_pred ccchHHHHHHHHHHhcc-------C--CCeEEEEEcCCCchHHHHHHHHHhhh
Q 002657 156 VVGLQSQLEQVWRCLVE-------E--PAGIVGLYGMGGVGKTTLLTHINNKF 199 (896)
Q Consensus 156 ~vGr~~~~~~l~~~L~~-------~--~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (896)
++|.+..++.+.+.+.. . +..++.++|+.|+|||+||+.+++..
T Consensus 511 v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l 563 (821)
T CHL00095 511 IIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYF 563 (821)
T ss_pred CcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence 78999999999888752 1 23467789999999999999999875
No 265
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.01 E-value=0.16 Score=50.47 Aligned_cols=168 Identities=17% Similarity=0.267 Sum_probs=93.8
Q ss_pred ccchHHHHHH---HHHHhccC------CCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHH
Q 002657 156 VVGLQSQLEQ---VWRCLVEE------PAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDLRLENIQEI 226 (896)
Q Consensus 156 ~vGr~~~~~~---l~~~L~~~------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 226 (896)
++|.+..+.+ |++.|.++ ..+-|..+|++|.|||-+|+++++.. +..| +.+- ..+ -
T Consensus 123 ViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~---kvp~-----l~vk----at~---l 187 (368)
T COG1223 123 VIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEA---KVPL-----LLVK----ATE---L 187 (368)
T ss_pred hhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhccc---CCce-----EEec----hHH---H
Confidence 6888766544 56677653 46789999999999999999999986 2222 2221 111 1
Q ss_pred HHHhcCCCCccccccCHHHHHHHHHHHh-CCceEEEEEecCCCc----------cccccc----cccCCC-CCCCCcEEE
Q 002657 227 IGGKIGLMNESWKSKSLQEKSLDIFKIL-GEKKFVLLLDDLWQR----------VDLTKV----GVPLPS-PQSSASKVV 290 (896)
Q Consensus 227 i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~----------~~~~~l----~~~~~~-~~~~~s~ii 290 (896)
|.+..| +....+..+.+.- +.-++++.+|.++.. .+..++ ...+.. ..+.|-.-|
T Consensus 188 iGehVG---------dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtI 258 (368)
T COG1223 188 IGEHVG---------DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTI 258 (368)
T ss_pred HHHHhh---------hHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEE
Confidence 222222 2223333333333 346899999998531 111111 111110 234565566
Q ss_pred EecCCHHHHhh-h--ccCcceeccCCChHhHHHHHHHHhcCcccCCCCChHHHHHHHHHHhCCC
Q 002657 291 FTTRSEEICGL-M--EAQKKFKVACLSDKDAWELFCHKVGEETLNNHPDIPELAQTVAKECGGM 351 (896)
Q Consensus 291 vTtR~~~v~~~-~--~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~Gl 351 (896)
-.|.+.+.... . .-...|+..--+++|-..++...+..-....... .+.++++.+|+
T Consensus 259 aaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~----~~~~~~~t~g~ 318 (368)
T COG1223 259 AATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDAD----LRYLAAKTKGM 318 (368)
T ss_pred eecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccccC----HHHHHHHhCCC
Confidence 66666655322 1 1123567777788888888888775433222222 46667777765
No 266
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.01 E-value=0.039 Score=59.11 Aligned_cols=92 Identities=16% Similarity=0.216 Sum_probs=56.9
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHhhhcc---CCCCCCeEEEEEeCCccCHHHHHHHHHHhcCCCCccc-------cccCH
Q 002657 174 PAGIVGLYGMGGVGKTTLLTHINNKFLQ---VPNDFDCVIWVVVSKDLRLENIQEIIGGKIGLMNESW-------KSKSL 243 (896)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~---~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~-------~~~~~ 243 (896)
..+++-|+|.+|+|||+|+.+++-.... ....-..++||+....|++.++.+ +++.++...+.. ...+.
T Consensus 125 ~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~d~~~~l~~I~~~~~~~~ 203 (344)
T PLN03187 125 TRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGMDADAVLDNIIYARAYTY 203 (344)
T ss_pred CCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCCChhhhcCeEEEecCCCH
Confidence 5578889999999999999988643311 011234789999999999888654 666666543210 12233
Q ss_pred HHHH---HHHHHHhC-CceEEEEEecC
Q 002657 244 QEKS---LDIFKILG-EKKFVLLLDDL 266 (896)
Q Consensus 244 ~~~~---~~l~~~l~-~kr~LlVlDdv 266 (896)
++.. ..+...+. .+--|||+|.+
T Consensus 204 e~~~~~l~~l~~~i~~~~~~LvVIDSi 230 (344)
T PLN03187 204 EHQYNLLLGLAAKMAEEPFRLLIVDSV 230 (344)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 3322 22323332 33457888887
No 267
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.99 E-value=0.022 Score=61.92 Aligned_cols=43 Identities=28% Similarity=0.339 Sum_probs=34.8
Q ss_pred cchH---HHHHHHHHHhccC--------C-CeEEEEEcCCCchHHHHHHHHHhhh
Q 002657 157 VGLQ---SQLEQVWRCLVEE--------P-AGIVGLYGMGGVGKTTLLTHINNKF 199 (896)
Q Consensus 157 vGr~---~~~~~l~~~L~~~--------~-~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (896)
-|-| .|+++|+++|.++ + .+-|.++|++|.|||-||++++.+.
T Consensus 307 kG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA 361 (752)
T KOG0734|consen 307 KGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEA 361 (752)
T ss_pred cChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhccc
Confidence 4654 4778889999874 1 3568899999999999999999876
No 268
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.98 E-value=0.01 Score=56.84 Aligned_cols=116 Identities=15% Similarity=0.190 Sum_probs=61.6
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCC--ccCHHHHHHHHHHhcCCCCccccccCHHHHHHHHH
Q 002657 174 PAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSK--DLRLENIQEIIGGKIGLMNESWKSKSLQEKSLDIF 251 (896)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~--~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 251 (896)
+-.+++|+|..|.|||||.+.++... ......+++.-.. ..+..+. ....++... +-..-+...-.+.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~----~~~~G~v~~~g~~~~~~~~~~~---~~~~i~~~~---qLS~G~~qrl~la 94 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLY----KPDSGEILVDGKEVSFASPRDA---RRAGIAMVY---QLSVGERQMVEIA 94 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC----CCCCeEEEECCEECCcCCHHHH---HhcCeEEEE---ecCHHHHHHHHHH
Confidence 45789999999999999999998764 2334444443211 1111111 111121110 1112223333455
Q ss_pred HHhCCceEEEEEecCCCccc---cccccccCCCCCCCCcEEEEecCCHHHH
Q 002657 252 KILGEKKFVLLLDDLWQRVD---LTKVGVPLPSPQSSASKVVFTTRSEEIC 299 (896)
Q Consensus 252 ~~l~~kr~LlVlDdv~~~~~---~~~l~~~~~~~~~~~s~iivTtR~~~v~ 299 (896)
+.+-.++-++++|+.-..-+ ...+...+......|..||++|.+....
T Consensus 95 ral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~ 145 (163)
T cd03216 95 RALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEV 145 (163)
T ss_pred HHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 55666778889999854322 2233222221122366788888887643
No 269
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=95.98 E-value=0.038 Score=52.22 Aligned_cols=124 Identities=21% Similarity=0.209 Sum_probs=70.3
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEE---------------------eCCcc--------------
Q 002657 174 PAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVV---------------------VSKDL-------------- 218 (896)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~---------------------~~~~~-------------- 218 (896)
+-..+.++|++|.||||+.+.+|.... .-...+|+. |-|++
T Consensus 27 ~Gef~fl~GpSGAGKSTllkLi~~~e~----pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~ 102 (223)
T COG2884 27 KGEFVFLTGPSGAGKSTLLKLIYGEER----PTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVAL 102 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhhc----CCCceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhh
Confidence 456899999999999999999998762 112233332 11111
Q ss_pred -------CHHHHHHHH---HHhcCCCCcc----ccccCHHHHHHHHHHHhCCceEEEEEecCC----CccccccccccCC
Q 002657 219 -------RLENIQEII---GGKIGLMNES----WKSKSLQEKSLDIFKILGEKKFVLLLDDLW----QRVDLTKVGVPLP 280 (896)
Q Consensus 219 -------~~~~~~~~i---~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~----~~~~~~~l~~~~~ 280 (896)
...++.+.. ++..++.... ..-..-++....|.+.+-+++-+++=|.-- ....|+-+. .|.
T Consensus 103 pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~-lfe 181 (223)
T COG2884 103 PLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMR-LFE 181 (223)
T ss_pred hhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHH-HHH
Confidence 122232222 3333322110 011222233344666677888889888763 223344332 222
Q ss_pred CCCCCCcEEEEecCCHHHHhhh
Q 002657 281 SPQSSASKVVFTTRSEEICGLM 302 (896)
Q Consensus 281 ~~~~~~s~iivTtR~~~v~~~~ 302 (896)
.-+..|..|+++|.+.++...+
T Consensus 182 einr~GtTVl~ATHd~~lv~~~ 203 (223)
T COG2884 182 EINRLGTTVLMATHDLELVNRM 203 (223)
T ss_pred HHhhcCcEEEEEeccHHHHHhc
Confidence 2456799999999999876654
No 270
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=95.97 E-value=0.0081 Score=67.13 Aligned_cols=44 Identities=27% Similarity=0.412 Sum_probs=39.8
Q ss_pred ccchHHHHHHHHHHhc------cCCCeEEEEEcCCCchHHHHHHHHHhhh
Q 002657 156 VVGLQSQLEQVWRCLV------EEPAGIVGLYGMGGVGKTTLLTHINNKF 199 (896)
Q Consensus 156 ~vGr~~~~~~l~~~L~------~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (896)
++|.++.+++|++.|. +...+++.++|++|+||||||+.+++-.
T Consensus 78 ~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~l 127 (644)
T PRK15455 78 FYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLM 127 (644)
T ss_pred ccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHH
Confidence 7999999999999983 3467899999999999999999999987
No 271
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.97 E-value=0.025 Score=56.13 Aligned_cols=125 Identities=18% Similarity=0.204 Sum_probs=70.3
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEE----------------------eCCcc-------------
Q 002657 174 PAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVV----------------------VSKDL------------- 218 (896)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~----------------------~~~~~------------- 218 (896)
+-..|+|+|++|+|||||...+..-. ..-...+++. +-|.+
T Consensus 30 ~Ge~vaI~GpSGSGKSTLLniig~ld----~pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~ 105 (226)
T COG1136 30 AGEFVAIVGPSGSGKSTLLNLLGGLD----KPTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVE 105 (226)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc----CCCCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCCCCHHHHHH
Confidence 45689999999999999999986543 1111222221 11111
Q ss_pred -----------CHHHHHHHHHHhcCCCCc-----cccccCHHHHHHHHHHHhCCceEEEEEecCCCc---cccccccccC
Q 002657 219 -----------RLENIQEIIGGKIGLMNE-----SWKSKSLQEKSLDIFKILGEKKFVLLLDDLWQR---VDLTKVGVPL 279 (896)
Q Consensus 219 -----------~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~---~~~~~l~~~~ 279 (896)
...+....+++.+++... ...-..-++..-.+.+.+-..+-+|+-|+--.. ..-+.+...+
T Consensus 106 lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll 185 (226)
T COG1136 106 LPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELL 185 (226)
T ss_pred hHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHH
Confidence 123344555666555421 111222333444577778888889999987321 1111221122
Q ss_pred CC-CCCCCcEEEEecCCHHHHhhh
Q 002657 280 PS-PQSSASKVVFTTRSEEICGLM 302 (896)
Q Consensus 280 ~~-~~~~~s~iivTtR~~~v~~~~ 302 (896)
.. ....|..||+.|.+..++..+
T Consensus 186 ~~~~~~~g~tii~VTHd~~lA~~~ 209 (226)
T COG1136 186 RELNKERGKTIIMVTHDPELAKYA 209 (226)
T ss_pred HHHHHhcCCEEEEEcCCHHHHHhC
Confidence 10 234578899999999998753
No 272
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.97 E-value=0.049 Score=58.51 Aligned_cols=58 Identities=24% Similarity=0.405 Sum_probs=42.1
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHhhhccCCC----CCCeEEEEEeCCccCHHHHHHHHHHhcCC
Q 002657 174 PAGIVGLYGMGGVGKTTLLTHINNKFLQVPN----DFDCVIWVVVSKDLRLENIQEIIGGKIGL 233 (896)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 233 (896)
...++-|+|++|+|||+++.+++-.. .... .-..++||+....++...+. ++++.++.
T Consensus 101 ~g~vtei~G~~GsGKT~l~~~~~~~~-~~~~~~gg~~~~~~yi~te~~f~~~rl~-~~~~~~g~ 162 (317)
T PRK04301 101 TQSITEFYGEFGSGKTQICHQLAVNV-QLPEEKGGLEGKAVYIDTEGTFRPERIE-QMAEALGL 162 (317)
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHh-ccccccCCCCceEEEEeCCCCcCHHHHH-HHHHHcCC
Confidence 56789999999999999999998664 1111 11478999998888877765 44455543
No 273
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.94 E-value=0.0033 Score=37.12 Aligned_cols=18 Identities=33% Similarity=0.499 Sum_probs=8.2
Q ss_pred CCEEeccCCCccccchhh
Q 002657 586 LQHLDLSLTNIEKLSGEL 603 (896)
Q Consensus 586 L~~L~Ls~~~i~~lp~~l 603 (896)
|++|||++|+++.+|.++
T Consensus 2 L~~Ldls~n~l~~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSF 19 (22)
T ss_dssp ESEEEETSSEESEEGTTT
T ss_pred ccEEECCCCcCEeCChhh
Confidence 444444444444444433
No 274
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.94 E-value=0.022 Score=55.89 Aligned_cols=79 Identities=14% Similarity=0.137 Sum_probs=45.9
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHH
Q 002657 174 PAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDLRLENIQEIIGGKIGLMNESWKSKSLQEKSLDIFKI 253 (896)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 253 (896)
.+.+|+|-|.+|+||||+|+.++..+ +..+ +.-++... +-...-.....+......+.....+.+-+...|...
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~---~~~~--~~~I~~D~-YYk~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L 80 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQL---GVEK--VVVISLDD-YYKDQSHLPFEERNKINYDHPEAFDLDLLIEHLKDL 80 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHh---CcCc--ceEeeccc-cccchhhcCHhhcCCcCccChhhhcHHHHHHHHHHH
Confidence 45789999999999999999999987 2221 12222111 111111111112222222223456677777888888
Q ss_pred hCCce
Q 002657 254 LGEKK 258 (896)
Q Consensus 254 l~~kr 258 (896)
+++++
T Consensus 81 ~~g~~ 85 (218)
T COG0572 81 KQGKP 85 (218)
T ss_pred HcCCc
Confidence 88887
No 275
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.93 E-value=0.089 Score=61.06 Aligned_cols=173 Identities=18% Similarity=0.192 Sum_probs=99.5
Q ss_pred ccchHH---HHHHHHHHhccC---------CCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHH
Q 002657 156 VVGLQS---QLEQVWRCLVEE---------PAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDLRLENI 223 (896)
Q Consensus 156 ~vGr~~---~~~~l~~~L~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 223 (896)
+.|-++ |+++++++|.++ -.+-+.++|++|+|||-||++++... . +-|++++..
T Consensus 313 VAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEA-g-------VPF~svSGS------ 378 (774)
T KOG0731|consen 313 VAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEA-G-------VPFFSVSGS------ 378 (774)
T ss_pred ccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhccc-C-------CceeeechH------
Confidence 567665 455566666652 24668899999999999999999876 2 344555542
Q ss_pred HHHHHHhcCCCCccccccCHHHHHHHHHHHh-CCceEEEEEecCCCcc-----------------ccccccccCCCC-CC
Q 002657 224 QEIIGGKIGLMNESWKSKSLQEKSLDIFKIL-GEKKFVLLLDDLWQRV-----------------DLTKVGVPLPSP-QS 284 (896)
Q Consensus 224 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~~-----------------~~~~l~~~~~~~-~~ 284 (896)
+..+.+...+ ..++..+...- ...+.++.+|+++... .+.++..-+... ..
T Consensus 379 --EFvE~~~g~~--------asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~ 448 (774)
T KOG0731|consen 379 --EFVEMFVGVG--------ASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETS 448 (774)
T ss_pred --HHHHHhcccc--------hHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCC
Confidence 2222221110 12222233222 3568899999885321 122222222101 11
Q ss_pred CCcEEEEecCCHHHHh--hhc---cCcceeccCCChHhHHHHHHHHhcCcccCCCCChHHHHHHHHHHhCCCchHH
Q 002657 285 SASKVVFTTRSEEICG--LME---AQKKFKVACLSDKDAWELFCHKVGEETLNNHPDIPELAQTVAKECGGMPLAL 355 (896)
Q Consensus 285 ~~s~iivTtR~~~v~~--~~~---~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai 355 (896)
.+--++-+|+..++.+ .+. -+..+.++.-+...-.++|.-++...... .+..++++ |+...-|.+=|.
T Consensus 449 ~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~--~e~~dl~~-~a~~t~gf~gad 521 (774)
T KOG0731|consen 449 KGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLD--DEDVDLSK-LASLTPGFSGAD 521 (774)
T ss_pred CcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCC--cchhhHHH-HHhcCCCCcHHH
Confidence 2223334555555522 122 24578888888899999999988765422 34456677 888888887554
No 276
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=95.93 E-value=0.026 Score=59.65 Aligned_cols=27 Identities=26% Similarity=0.388 Sum_probs=24.6
Q ss_pred CCCeEEEEEcCCCchHHHHHHHHHhhh
Q 002657 173 EPAGIVGLYGMGGVGKTTLLTHINNKF 199 (896)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (896)
...+.++|||++|+|||.+|+.+++..
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~el 172 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKM 172 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHc
Confidence 356789999999999999999999987
No 277
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.92 E-value=0.033 Score=56.26 Aligned_cols=127 Identities=17% Similarity=0.140 Sum_probs=72.6
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCC-----ccCHHHHHHHHHHhcCCCCcc-----ccccCH
Q 002657 174 PAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSK-----DLRLENIQEIIGGKIGLMNES-----WKSKSL 243 (896)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~-----~~~~~~~~~~i~~~l~~~~~~-----~~~~~~ 243 (896)
+..+++++|.+|+||||+++.+..-. ..-...++..-.+ .....+-..++++.++...+. ++-..-
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L~----~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGG 113 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGLE----EPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGG 113 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcCc----CCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCch
Confidence 56799999999999999999998765 2222333333111 222344556667766654321 111222
Q ss_pred HHHHHHHHHHhCCceEEEEEecCCCcccc---ccccccCCC-CCCCCcEEEEecCCHHHHhhhcc
Q 002657 244 QEKSLDIFKILGEKKFVLLLDDLWQRVDL---TKVGVPLPS-PQSSASKVVFTTRSEEICGLMEA 304 (896)
Q Consensus 244 ~~~~~~l~~~l~~kr~LlVlDdv~~~~~~---~~l~~~~~~-~~~~~s~iivTtR~~~v~~~~~~ 304 (896)
+...-.+.+.+.-++-++|.|..-+.-+. .++...+.. ....|...++.|.+-.+...+..
T Consensus 114 QrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isd 178 (268)
T COG4608 114 QRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISD 178 (268)
T ss_pred hhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcc
Confidence 22233467778889999999998543221 111111110 12345667788887777666543
No 278
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.90 E-value=0.27 Score=54.13 Aligned_cols=26 Identities=27% Similarity=0.468 Sum_probs=23.5
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHhhh
Q 002657 174 PAGIVGLYGMGGVGKTTLLTHINNKF 199 (896)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (896)
...+|.++|.+|+||||++..++...
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l 124 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYY 124 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46799999999999999999998876
No 279
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.89 E-value=0.0094 Score=54.57 Aligned_cols=24 Identities=42% Similarity=0.504 Sum_probs=22.1
Q ss_pred eEEEEEcCCCchHHHHHHHHHhhh
Q 002657 176 GIVGLYGMGGVGKTTLLTHINNKF 199 (896)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~v~~~~ 199 (896)
--|+|.|++|+||||+++.+.+..
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHH
Confidence 358899999999999999999987
No 280
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=95.87 E-value=0.035 Score=52.12 Aligned_cols=117 Identities=20% Similarity=0.196 Sum_probs=61.4
Q ss_pred eEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCC---ccCHHHHHHHHHHhcC---CC-CccccccCHHH---
Q 002657 176 GIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSK---DLRLENIQEIIGGKIG---LM-NESWKSKSLQE--- 245 (896)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~---~~~~~~~~~~i~~~l~---~~-~~~~~~~~~~~--- 245 (896)
..|-|++..|.||||+|...+-... ...+ .+.++..-. ......+++.+- .+. .. ...+...+..+
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~--~~g~-~v~~vQFlKg~~~~gE~~~l~~l~-~v~~~~~g~~~~~~~~~~~~~~~ 78 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRAL--GHGY-RVGVVQFLKGGWKYGELKALERLP-NIEIHRMGRGFFWTTENDEEDIA 78 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH--HCCC-eEEEEEEeCCCCccCHHHHHHhCC-CcEEEECCCCCccCCCChHHHHH
Confidence 5788999999999999998877652 2333 344433322 233444444331 110 00 00011111111
Q ss_pred ----HHHHHHHHhCC-ceEEEEEecCCC-----ccccccccccCCCCCCCCcEEEEecCCHH
Q 002657 246 ----KSLDIFKILGE-KKFVLLLDDLWQ-----RVDLTKVGVPLPSPQSSASKVVFTTRSEE 297 (896)
Q Consensus 246 ----~~~~l~~~l~~-kr~LlVlDdv~~-----~~~~~~l~~~~~~~~~~~s~iivTtR~~~ 297 (896)
.....++.+.. +-=|+|||++-. ..+.+.+...+. ....+.-||+|.|+..
T Consensus 79 ~a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~-~rp~~~evIlTGr~~p 139 (159)
T cd00561 79 AAAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLK-AKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHH-cCCCCCEEEEECCCCC
Confidence 12223444444 344999999932 233444444443 4456778999999853
No 281
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=95.87 E-value=0.11 Score=54.68 Aligned_cols=88 Identities=16% Similarity=0.163 Sum_probs=54.2
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHhcCCCCccc---cccCHHHHHHHH
Q 002657 174 PAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDLRLENIQEIIGGKIGLMNESW---KSKSLQEKSLDI 250 (896)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 250 (896)
.-+++-|+|+.|+||||||.++..... ..-..++||...+.++.. .++.++...+.. .+...++..+.+
T Consensus 52 ~G~ivEi~G~~ssGKttLaL~~ia~~q---~~g~~~a~ID~e~~ld~~-----~a~~lGvdl~rllv~~P~~~E~al~~~ 123 (322)
T PF00154_consen 52 RGRIVEIYGPESSGKTTLALHAIAEAQ---KQGGICAFIDAEHALDPE-----YAESLGVDLDRLLVVQPDTGEQALWIA 123 (322)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH---HTT-EEEEEESSS---HH-----HHHHTT--GGGEEEEE-SSHHHHHHHH
T ss_pred cCceEEEeCCCCCchhhhHHHHHHhhh---cccceeEEecCcccchhh-----HHHhcCccccceEEecCCcHHHHHHHH
Confidence 467999999999999999999988762 234568999998876653 345555543321 233445555555
Q ss_pred HHHhC-CceEEEEEecCCCc
Q 002657 251 FKILG-EKKFVLLLDDLWQR 269 (896)
Q Consensus 251 ~~~l~-~kr~LlVlDdv~~~ 269 (896)
...++ +.--++|+|-|-..
T Consensus 124 e~lirsg~~~lVVvDSv~al 143 (322)
T PF00154_consen 124 EQLIRSGAVDLVVVDSVAAL 143 (322)
T ss_dssp HHHHHTTSESEEEEE-CTT-
T ss_pred HHHhhcccccEEEEecCccc
Confidence 56554 34458899998543
No 282
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=95.87 E-value=0.047 Score=58.20 Aligned_cols=59 Identities=19% Similarity=0.239 Sum_probs=41.1
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHhhhcc---CCCCCCeEEEEEeCCccCHHHHHHHHHHhcCC
Q 002657 174 PAGIVGLYGMGGVGKTTLLTHINNKFLQ---VPNDFDCVIWVVVSKDLRLENIQEIIGGKIGL 233 (896)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~---~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 233 (896)
...++.|+|.+|+|||||+..++..... ....-..++|++....++...+ .++++.++.
T Consensus 95 ~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~~~ 156 (316)
T TIGR02239 95 TGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERYGL 156 (316)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHcCC
Confidence 5689999999999999999998764310 0112236799998887777763 445565554
No 283
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.86 E-value=0.028 Score=54.44 Aligned_cols=23 Identities=35% Similarity=0.522 Sum_probs=21.2
Q ss_pred EEEEEcCCCchHHHHHHHHHhhh
Q 002657 177 IVGLYGMGGVGKTTLLTHINNKF 199 (896)
Q Consensus 177 vi~I~G~gGiGKTtLa~~v~~~~ 199 (896)
++.++|++|+||||+++.++...
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~ 24 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYL 24 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68899999999999999998876
No 284
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=95.85 E-value=0.04 Score=56.56 Aligned_cols=92 Identities=17% Similarity=0.310 Sum_probs=55.9
Q ss_pred CCCeEEEEEcCCCchHHHHHHHHHhhhccCCCCC-CeEEEEEeCCcc-CHHHHHHHHHHhcCCCC-----ccccccCHH-
Q 002657 173 EPAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDF-DCVIWVVVSKDL-RLENIQEIIGGKIGLMN-----ESWKSKSLQ- 244 (896)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f-~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~-----~~~~~~~~~- 244 (896)
..-.-++|+|.+|+|||||++++++.. +.+| +.++++-+.+.. ...++.+++...-.... ...+.....
T Consensus 67 g~GQr~~If~~~G~GKTtLa~~i~~~i---~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r 143 (274)
T cd01133 67 AKGGKIGLFGGAGVGKTVLIMELINNI---AKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGAR 143 (274)
T ss_pred ccCCEEEEecCCCCChhHHHHHHHHHH---HhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHH
Confidence 355689999999999999999999987 2334 445566665543 45666666654321110 000111111
Q ss_pred ----HHHHHHHHHh--C-CceEEEEEecCC
Q 002657 245 ----EKSLDIFKIL--G-EKKFVLLLDDLW 267 (896)
Q Consensus 245 ----~~~~~l~~~l--~-~kr~LlVlDdv~ 267 (896)
...-.+.+++ + ++.+|+++||+-
T Consensus 144 ~~~~~~a~~~AEyfr~~~g~~Vl~~~Dslt 173 (274)
T cd01133 144 ARVALTGLTMAEYFRDEEGQDVLLFIDNIF 173 (274)
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEEeChh
Confidence 1122345555 3 899999999983
No 285
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.85 E-value=0.044 Score=56.11 Aligned_cols=49 Identities=18% Similarity=0.157 Sum_probs=35.7
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHH
Q 002657 174 PAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDLRLENIQEII 227 (896)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 227 (896)
..+++.|.|.+|+|||++|.++..... ..-..++|++... +..++.+.+
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~---~~ge~~lyvs~ee--~~~~i~~~~ 68 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGL---QMGEPGIYVALEE--HPVQVRRNM 68 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH---HcCCcEEEEEeeC--CHHHHHHHH
Confidence 568999999999999999999766531 2345678887654 455555543
No 286
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.84 E-value=0.034 Score=60.07 Aligned_cols=89 Identities=21% Similarity=0.282 Sum_probs=52.8
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCC-ccCHHHHHHHHHHhcCCCCccccccCHHHHHHHHHH
Q 002657 174 PAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSK-DLRLENIQEIIGGKIGLMNESWKSKSLQEKSLDIFK 252 (896)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 252 (896)
+..++.++|+.|+||||++.+++... ..+.....+..++... .....+-++..++.++.+... ..+..+....+ .
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~-~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~--~~~~~~l~~~l-~ 211 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARC-VMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHA--VKDGGDLQLAL-A 211 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH-HHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEe--cCCcccHHHHH-H
Confidence 35799999999999999999998875 1121223556665432 223556666777777765422 12222233333 3
Q ss_pred HhCCceEEEEEecCC
Q 002657 253 ILGEKKFVLLLDDLW 267 (896)
Q Consensus 253 ~l~~kr~LlVlDdv~ 267 (896)
.+.++. ++++|..-
T Consensus 212 ~l~~~D-lVLIDTaG 225 (374)
T PRK14722 212 ELRNKH-MVLIDTIG 225 (374)
T ss_pred HhcCCC-EEEEcCCC
Confidence 344554 55689884
No 287
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=95.84 E-value=0.033 Score=54.59 Aligned_cols=44 Identities=34% Similarity=0.513 Sum_probs=36.1
Q ss_pred ccchHHHHHHHHHHhc----cCCCeEEEEEcCCCchHHHHHHHHHhhh
Q 002657 156 VVGLQSQLEQVWRCLV----EEPAGIVGLYGMGGVGKTTLLTHINNKF 199 (896)
Q Consensus 156 ~vGr~~~~~~l~~~L~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (896)
++|.+...+.+++--. .-...-|.+||.-|.||++|++++.+.+
T Consensus 62 l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~ 109 (287)
T COG2607 62 LVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEY 109 (287)
T ss_pred HhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHH
Confidence 7899888888876432 3355678899999999999999999987
No 288
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=95.83 E-value=0.17 Score=49.62 Aligned_cols=181 Identities=17% Similarity=0.252 Sum_probs=96.3
Q ss_pred ccc-hHHHHHHHHHHhcc-------------CCCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHH
Q 002657 156 VVG-LQSQLEQVWRCLVE-------------EPAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDLRLE 221 (896)
Q Consensus 156 ~vG-r~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~ 221 (896)
++| .++.+.+|.+.+.= .+.+-+.++|++|.|||-||+.|+++- ...|+.||...-
T Consensus 148 MiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht--------~c~firvsgsel-- 217 (404)
T KOG0728|consen 148 MIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHT--------DCTFIRVSGSEL-- 217 (404)
T ss_pred HhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhc--------ceEEEEechHHH--
Confidence 554 57777777666531 256678899999999999999999875 235677765411
Q ss_pred HHHHHHHHhcCCCCccccccCHHHHHHHHHHHh-CCceEEEEEecCCCcc----------c------cccccccCCC-CC
Q 002657 222 NIQEIIGGKIGLMNESWKSKSLQEKSLDIFKIL-GEKKFVLLLDDLWQRV----------D------LTKVGVPLPS-PQ 283 (896)
Q Consensus 222 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~~----------~------~~~l~~~~~~-~~ 283 (896)
+++-|.+ + ......+.-.- ..-+.+|..|.+++.. + .-++...+.. ..
T Consensus 218 -vqk~ige-----g--------srmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfea 283 (404)
T KOG0728|consen 218 -VQKYIGE-----G--------SRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEA 283 (404)
T ss_pred -HHHHhhh-----h--------HHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhcccccc
Confidence 1111111 0 11111221111 2356778888875310 0 0111111110 23
Q ss_pred CCCcEEEEecCCHHHHh--hhc---cCcceeccCCChHhHHHHHHHHhcCcccCCCCChHHHHHHHHHHhCCCchHHHHH
Q 002657 284 SSASKVVFTTRSEEICG--LME---AQKKFKVACLSDKDAWELFCHKVGEETLNNHPDIPELAQTVAKECGGMPLALITI 358 (896)
Q Consensus 284 ~~~s~iivTtR~~~v~~--~~~---~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~ 358 (896)
.+..+||.+|..-++.. .+. .+..++..+-+++.-.++++-+....+...--+++.+|.++....|.--.++.+=
T Consensus 284 tknikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~vcte 363 (404)
T KOG0728|consen 284 TKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKGVCTE 363 (404)
T ss_pred ccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhhhhhhh
Confidence 35668888777655532 112 2456777777777767777666554443333455555555544333333444443
Q ss_pred HH
Q 002657 359 GR 360 (896)
Q Consensus 359 ~~ 360 (896)
|+
T Consensus 364 ag 365 (404)
T KOG0728|consen 364 AG 365 (404)
T ss_pred hh
Confidence 43
No 289
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.80 E-value=0.041 Score=59.92 Aligned_cols=84 Identities=21% Similarity=0.373 Sum_probs=50.2
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHhcCCCCccc---cccCHHHHHHHH
Q 002657 174 PAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDLRLENIQEIIGGKIGLMNESW---KSKSLQEKSLDI 250 (896)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 250 (896)
.-.++.|.|.+|+|||||+.+++.... ..-..++|++... +..++ ..-++.++...+.. ...+.+.+...+
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~~a---~~g~~VlYvs~EE--s~~qi-~~Ra~rlg~~~~~l~l~~e~~le~I~~~i 154 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAARLA---KRGGKVLYVSGEE--SPEQI-KLRADRLGISTENLYLLAETNLEDILASI 154 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHH---hcCCeEEEEECCc--CHHHH-HHHHHHcCCCcccEEEEccCcHHHHHHHH
Confidence 457999999999999999999988762 2234677876543 33333 22344555432221 112233333333
Q ss_pred HHHhCCceEEEEEecC
Q 002657 251 FKILGEKKFVLLLDDL 266 (896)
Q Consensus 251 ~~~l~~kr~LlVlDdv 266 (896)
. +.++-++|+|.+
T Consensus 155 ~---~~~~~lVVIDSI 167 (372)
T cd01121 155 E---ELKPDLVIIDSI 167 (372)
T ss_pred H---hcCCcEEEEcch
Confidence 2 235668889987
No 290
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.80 E-value=0.014 Score=56.39 Aligned_cols=27 Identities=26% Similarity=0.566 Sum_probs=23.6
Q ss_pred CCCeEEEEEcCCCchHHHHHHHHHhhh
Q 002657 173 EPAGIVGLYGMGGVGKTTLLTHINNKF 199 (896)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (896)
++-.+++|+|+.|+|||||++.+..-.
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 355799999999999999999998764
No 291
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.79 E-value=0.018 Score=64.78 Aligned_cols=72 Identities=28% Similarity=0.265 Sum_probs=48.9
Q ss_pred CeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCc--cCHHHHHHHHHHhcCCCCccccccCHHHHHHHHHH
Q 002657 175 AGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKD--LRLENIQEIIGGKIGLMNESWKSKSLQEKSLDIFK 252 (896)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 252 (896)
..-|.|.|+.|+|||+||+++++.. . +...-.+.+++++.- ...+.+++.+- ..+.+
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~-~-k~~~~hv~~v~Cs~l~~~~~e~iQk~l~-------------------~vfse 489 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYY-S-KDLIAHVEIVSCSTLDGSSLEKIQKFLN-------------------NVFSE 489 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHh-c-cccceEEEEEechhccchhHHHHHHHHH-------------------HHHHH
Confidence 4568899999999999999999998 3 555556677776642 12222222221 22334
Q ss_pred HhCCceEEEEEecCC
Q 002657 253 ILGEKKFVLLLDDLW 267 (896)
Q Consensus 253 ~l~~kr~LlVlDdv~ 267 (896)
.+.-.+-+|||||++
T Consensus 490 ~~~~~PSiIvLDdld 504 (952)
T KOG0735|consen 490 ALWYAPSIIVLDDLD 504 (952)
T ss_pred HHhhCCcEEEEcchh
Confidence 455678999999995
No 292
>PRK08939 primosomal protein DnaI; Reviewed
Probab=95.78 E-value=0.048 Score=57.80 Aligned_cols=117 Identities=21% Similarity=0.187 Sum_probs=65.4
Q ss_pred chHHHHHHHHHHhcc----CCCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHhcCC
Q 002657 158 GLQSQLEQVWRCLVE----EPAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDLRLENIQEIIGGKIGL 233 (896)
Q Consensus 158 Gr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 233 (896)
++........+++.. ...+-+.++|..|+|||.||..+++... ...+. +.++++ ..++..+....+.
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~--~~g~~-v~~~~~------~~l~~~lk~~~~~ 205 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELA--KKGVS-STLLHF------PEFIRELKNSISD 205 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHH--HcCCC-EEEEEH------HHHHHHHHHHHhc
Confidence 454555555555543 1456799999999999999999999983 33333 455544 3455555554421
Q ss_pred CCccccccCHHHHHHHHHHHhCCceEEEEEecCCC--cccccc--ccccCCCCC-CCCcEEEEecCC
Q 002657 234 MNESWKSKSLQEKSLDIFKILGEKKFVLLLDDLWQ--RVDLTK--VGVPLPSPQ-SSASKVVFTTRS 295 (896)
Q Consensus 234 ~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~--~~~~~~--l~~~~~~~~-~~~s~iivTtR~ 295 (896)
.+..+ ..+.++ +-=||||||+.. ..+|.. +...+.... ..+-.+|+||..
T Consensus 206 -------~~~~~----~l~~l~-~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 206 -------GSVKE----KIDAVK-EAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred -------CcHHH----HHHHhc-CCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 11122 222233 344899999953 234542 322221011 234557777764
No 293
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=95.77 E-value=0.018 Score=59.81 Aligned_cols=40 Identities=23% Similarity=0.273 Sum_probs=35.0
Q ss_pred cchHHHHHHHHHHhccCCCeEEEEEcCCCchHHHHHHHHH
Q 002657 157 VGLQSQLEQVWRCLVEEPAGIVGLYGMGGVGKTTLLTHIN 196 (896)
Q Consensus 157 vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~ 196 (896)
-+|..+..--+++|.++.+..|.+.|.+|.|||.||.+..
T Consensus 227 ~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAg 266 (436)
T COG1875 227 RPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAG 266 (436)
T ss_pred CcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHH
Confidence 3577788888999999999999999999999998887654
No 294
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.77 E-value=0.025 Score=55.18 Aligned_cols=121 Identities=19% Similarity=0.241 Sum_probs=65.0
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEE---eCCccCHHHH------HHHHHHhcCCCCc---ccccc
Q 002657 174 PAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVV---VSKDLRLENI------QEIIGGKIGLMNE---SWKSK 241 (896)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~---~~~~~~~~~~------~~~i~~~l~~~~~---~~~~~ 241 (896)
+-.+++|+|..|.|||||++.++... ......+++. +.. .+.... ..++++.++.... .....
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~----~~~~G~v~~~g~~~~~-~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~L 98 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLL----KPSSGEILLDGKDLAS-LSPKELARKIAYVPQALELLGLAHLADRPFNEL 98 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC----CCCCcEEEECCEECCc-CCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccC
Confidence 45799999999999999999998764 2233333332 211 122111 1124555554321 01112
Q ss_pred C-HHHHHHHHHHHhCCceEEEEEecCCCcc---ccccccccCCCCCCC-CcEEEEecCCHHHH
Q 002657 242 S-LQEKSLDIFKILGEKKFVLLLDDLWQRV---DLTKVGVPLPSPQSS-ASKVVFTTRSEEIC 299 (896)
Q Consensus 242 ~-~~~~~~~l~~~l~~kr~LlVlDdv~~~~---~~~~l~~~~~~~~~~-~s~iivTtR~~~v~ 299 (896)
+ -+...-.+...+-..+-++++|+.-..- ..+.+...+...... +..||++|.+.+..
T Consensus 99 S~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 99 SGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLA 161 (180)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 2 2223334556666778899999985332 222332222211122 56788888876543
No 295
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.76 E-value=0.022 Score=64.42 Aligned_cols=72 Identities=25% Similarity=0.366 Sum_probs=52.6
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHH
Q 002657 174 PAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDLRLENIQEIIGGKIGLMNESWKSKSLQEKSLDIFKI 253 (896)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 253 (896)
.-++..+.|++|+||||||+-++++. .| .++=|.+|++-+...+-..|...+.... .
T Consensus 325 ~kKilLL~GppGlGKTTLAHViAkqa-----GY-sVvEINASDeRt~~~v~~kI~~avq~~s-----------------~ 381 (877)
T KOG1969|consen 325 PKKILLLCGPPGLGKTTLAHVIAKQA-----GY-SVVEINASDERTAPMVKEKIENAVQNHS-----------------V 381 (877)
T ss_pred ccceEEeecCCCCChhHHHHHHHHhc-----Cc-eEEEecccccccHHHHHHHHHHHHhhcc-----------------c
Confidence 45799999999999999999999874 33 3566778887777766666655543221 2
Q ss_pred hC--CceEEEEEecCCC
Q 002657 254 LG--EKKFVLLLDDLWQ 268 (896)
Q Consensus 254 l~--~kr~LlVlDdv~~ 268 (896)
+. +++.-||+|.++.
T Consensus 382 l~adsrP~CLViDEIDG 398 (877)
T KOG1969|consen 382 LDADSRPVCLVIDEIDG 398 (877)
T ss_pred cccCCCcceEEEecccC
Confidence 22 6788899999964
No 296
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.76 E-value=0.037 Score=61.14 Aligned_cols=91 Identities=20% Similarity=0.258 Sum_probs=48.6
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCc-cCHHHHHHHHHHhcCCCCccc-cccCHHHHHHHHH
Q 002657 174 PAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKD-LRLENIQEIIGGKIGLMNESW-KSKSLQEKSLDIF 251 (896)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~l~ 251 (896)
...++.++|.+|+||||.|..++... ..+..+ .+..|++... ....+-+...+...+.+.... ...+.........
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l-~~~~g~-kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al 175 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYL-KKKQGK-KVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRAL 175 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHH-HHhCCC-eEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHH
Confidence 45799999999999999999988775 111222 3444443321 122333445556555442111 1223334443333
Q ss_pred HHhCCceE-EEEEecC
Q 002657 252 KILGEKKF-VLLLDDL 266 (896)
Q Consensus 252 ~~l~~kr~-LlVlDdv 266 (896)
+....+.| ++|+|-.
T Consensus 176 ~~~~~~~~DvVIIDTa 191 (428)
T TIGR00959 176 EYAKENGFDVVIVDTA 191 (428)
T ss_pred HHHHhcCCCEEEEeCC
Confidence 33333344 6666665
No 297
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.75 E-value=0.041 Score=57.85 Aligned_cols=88 Identities=20% Similarity=0.308 Sum_probs=48.6
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCc-cCHHHHHHHHHHhcCCCCccccccCHHHHHHHHHH
Q 002657 174 PAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKD-LRLENIQEIIGGKIGLMNESWKSKSLQEKSLDIFK 252 (896)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 252 (896)
..++++|+|++|+||||++..++... ..+..-..+..|+.... ....+.+....+.++.+.. ...+...+...+..
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~-~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~--~~~~~~~l~~~l~~ 269 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARF-VLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVK--VARDPKELRKALDR 269 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-HHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCcee--ccCCHHHHHHHHHH
Confidence 45799999999999999999998876 22211134556654431 1223334444555554332 12233344433333
Q ss_pred HhCCceEEEEEecC
Q 002657 253 ILGEKKFVLLLDDL 266 (896)
Q Consensus 253 ~l~~kr~LlVlDdv 266 (896)
+.+ .=+|++|..
T Consensus 270 -~~~-~d~vliDt~ 281 (282)
T TIGR03499 270 -LRD-KDLILIDTA 281 (282)
T ss_pred -ccC-CCEEEEeCC
Confidence 343 346777753
No 298
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.75 E-value=0.078 Score=52.43 Aligned_cols=83 Identities=14% Similarity=0.119 Sum_probs=46.3
Q ss_pred EEEEEcCCCchHHHHHHHHHhhhccCCCCCC---eEEEEEeCCccCHHHHHHHHHHh-cCCCCccccccCHHHHHHHHHH
Q 002657 177 IVGLYGMGGVGKTTLLTHINNKFLQVPNDFD---CVIWVVVSKDLRLENIQEIIGGK-IGLMNESWKSKSLQEKSLDIFK 252 (896)
Q Consensus 177 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~---~~~wv~~~~~~~~~~~~~~i~~~-l~~~~~~~~~~~~~~~~~~l~~ 252 (896)
||+|.|.+|+||||+|+.+...+. ..... ....+....-.........-... -..........+.+.+...+..
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~--~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~p~a~d~~~l~~~l~~ 78 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILN--KRGIPAMEMDIILSLDDFYDDYHLRDRKGRGENRYNFDHPDAFDFDLLKEDLKA 78 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT--TCTTTCCCSEEEEEGGGGBHHHHHHHHHHHCTTTSSTTSGGGBSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC--ccCcCccceeEEEeecccccccchhhHhhccccccCCCCccccCHHHHHHHHHH
Confidence 799999999999999999999882 12232 23333333222222222211111 0111112245567777777777
Q ss_pred HhCCceEEE
Q 002657 253 ILGEKKFVL 261 (896)
Q Consensus 253 ~l~~kr~Ll 261 (896)
..+++.+-+
T Consensus 79 L~~g~~i~~ 87 (194)
T PF00485_consen 79 LKNGGSIEI 87 (194)
T ss_dssp HHTTSCEEE
T ss_pred HhCCCcccc
Confidence 767766544
No 299
>PRK06547 hypothetical protein; Provisional
Probab=95.74 E-value=0.014 Score=56.11 Aligned_cols=35 Identities=26% Similarity=0.177 Sum_probs=28.5
Q ss_pred HHHHHhccCCCeEEEEEcCCCchHHHHHHHHHhhh
Q 002657 165 QVWRCLVEEPAGIVGLYGMGGVGKTTLLTHINNKF 199 (896)
Q Consensus 165 ~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (896)
.+...+......+|+|.|++|+||||+|+.+.+..
T Consensus 5 ~~~~~~~~~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 5 LIAARLCGGGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred HHHHHhhcCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 34444555678899999999999999999998865
No 300
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=95.74 E-value=0.05 Score=59.00 Aligned_cols=138 Identities=13% Similarity=0.099 Sum_probs=77.2
Q ss_pred ccchHHHHHHHHHHhcc-CCCeE-EEEEcCCCchHHHHHHHHHhhhccCCC------------------CCCeEEEEEeC
Q 002657 156 VVGLQSQLEQVWRCLVE-EPAGI-VGLYGMGGVGKTTLLTHINNKFLQVPN------------------DFDCVIWVVVS 215 (896)
Q Consensus 156 ~vGr~~~~~~l~~~L~~-~~~~v-i~I~G~gGiGKTtLa~~v~~~~~~~~~------------------~f~~~~wv~~~ 215 (896)
++|-+....++..+... ++..- +.++|++|+||||+|..+++....... ..+-+..+..+
T Consensus 3 ~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s 82 (325)
T COG0470 3 LVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPS 82 (325)
T ss_pred cccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEeccc
Confidence 56777778888888774 44555 899999999999999999988621000 11233444444
Q ss_pred CccC---HHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHhCCceEEEEEecCCCcc--ccccccccCCCCCCCCcEEE
Q 002657 216 KDLR---LENIQEIIGGKIGLMNESWKSKSLQEKSLDIFKILGEKKFVLLLDDLWQRV--DLTKVGVPLPSPQSSASKVV 290 (896)
Q Consensus 216 ~~~~---~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~~s~ii 290 (896)
.... ..+..+++.+....... .++.-++++|+++... .-..+...+. .....+.+|
T Consensus 83 ~~~~~~i~~~~vr~~~~~~~~~~~------------------~~~~kviiidead~mt~~A~nallk~lE-ep~~~~~~i 143 (325)
T COG0470 83 DLRKIDIIVEQVRELAEFLSESPL------------------EGGYKVVIIDEADKLTEDAANALLKTLE-EPPKNTRFI 143 (325)
T ss_pred ccCCCcchHHHHHHHHHHhccCCC------------------CCCceEEEeCcHHHHhHHHHHHHHHHhc-cCCCCeEEE
Confidence 3333 23333444333322110 3566789999997532 2222222222 334566777
Q ss_pred EecCCH-HHHh-hhccCcceeccC
Q 002657 291 FTTRSE-EICG-LMEAQKKFKVAC 312 (896)
Q Consensus 291 vTtR~~-~v~~-~~~~~~~~~l~~ 312 (896)
++|... .+.. ..+....+++.+
T Consensus 144 l~~n~~~~il~tI~SRc~~i~f~~ 167 (325)
T COG0470 144 LITNDPSKILPTIRSRCQRIRFKP 167 (325)
T ss_pred EEcCChhhccchhhhcceeeecCC
Confidence 777643 2222 122334566666
No 301
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.74 E-value=0.02 Score=55.54 Aligned_cols=26 Identities=31% Similarity=0.461 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHhhh
Q 002657 174 PAGIVGLYGMGGVGKTTLLTHINNKF 199 (896)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (896)
.-.+++|+|..|.|||||++.++...
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 27 PGESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 45689999999999999999998764
No 302
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.72 E-value=0.017 Score=53.00 Aligned_cols=45 Identities=20% Similarity=0.354 Sum_probs=35.1
Q ss_pred EEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHhcCCCC
Q 002657 177 IVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDLRLENIQEIIGGKIGLMN 235 (896)
Q Consensus 177 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~ 235 (896)
+|.|-|++|+||||+|+.++++. . ..+ | +...++++|++..+.+.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~-g----l~~---v------saG~iFR~~A~e~gmsl 46 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHL-G----LKL---V------SAGTIFREMARERGMSL 46 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHh-C----Cce---e------eccHHHHHHHHHcCCCH
Confidence 68999999999999999999987 1 111 1 34578899999888654
No 303
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.71 E-value=0.033 Score=54.30 Aligned_cols=127 Identities=17% Similarity=0.183 Sum_probs=63.7
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHhcCCCCcc------------cccc
Q 002657 174 PAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDLRLENIQEIIGGKIGLMNES------------WKSK 241 (896)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~------------~~~~ 241 (896)
+-.+++|.|..|.|||||++.++... . .-...+++.-. ++......+...++.-.+. ....
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~-~---~~~G~i~~~g~---~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~L 99 (178)
T cd03247 27 QGEKIALLGRSGSGKSTLLQLLTGDL-K---PQQGEITLDGV---PVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRF 99 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC-C---CCCCEEEECCE---EHHHHHHHHHhhEEEEccCCeeecccHHHhhcccC
Confidence 45789999999999999999998765 1 11223333211 1111111111111110000 0111
Q ss_pred C-HHHHHHHHHHHhCCceEEEEEecCCCccc---cccccccCCCCCCCCcEEEEecCCHHHHhhhccCcceec
Q 002657 242 S-LQEKSLDIFKILGEKKFVLLLDDLWQRVD---LTKVGVPLPSPQSSASKVVFTTRSEEICGLMEAQKKFKV 310 (896)
Q Consensus 242 ~-~~~~~~~l~~~l~~kr~LlVlDdv~~~~~---~~~l~~~~~~~~~~~s~iivTtR~~~v~~~~~~~~~~~l 310 (896)
+ -+...-.+...+-.++=++++|+....-+ .+.+...+... ..+..||++|.+.+.... .+..+.+
T Consensus 100 S~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~-~~~~tii~~sh~~~~~~~--~d~~~~l 169 (178)
T cd03247 100 SGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEV-LKDKTLIWITHHLTGIEH--MDKILFL 169 (178)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHH-cCCCEEEEEecCHHHHHh--CCEEEEE
Confidence 1 12222335555566778899999864322 22222222211 235778888888766542 3444444
No 304
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.67 E-value=0.023 Score=58.02 Aligned_cols=80 Identities=15% Similarity=0.213 Sum_probs=50.2
Q ss_pred CeEEEEEcCCCchHHHHHHHHHhhhccCC--CCCCeEEEEEeCCccCHHHHHHHHHHhcCCCCccccccCHHHHHHHHHH
Q 002657 175 AGIVGLYGMGGVGKTTLLTHINNKFLQVP--NDFDCVIWVVVSKDLRLENIQEIIGGKIGLMNESWKSKSLQEKSLDIFK 252 (896)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 252 (896)
.|+|.++|++|.|||+|+++++++. .++ +.+....-+.++ -..++.+.... ...-...+.+++.+
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkL-SIR~~~~y~~~~liEin----shsLFSKWFsE--------SgKlV~kmF~kI~E 243 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKL-SIRTNDRYYKGQLIEIN----SHSLFSKWFSE--------SGKLVAKMFQKIQE 243 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhh-eeeecCccccceEEEEe----hhHHHHHHHhh--------hhhHHHHHHHHHHH
Confidence 5899999999999999999999998 443 233333333332 23333333322 22345566677777
Q ss_pred HhCCceE--EEEEecCC
Q 002657 253 ILGEKKF--VLLLDDLW 267 (896)
Q Consensus 253 ~l~~kr~--LlVlDdv~ 267 (896)
.+.++.. .+.+|.|.
T Consensus 244 Lv~d~~~lVfvLIDEVE 260 (423)
T KOG0744|consen 244 LVEDRGNLVFVLIDEVE 260 (423)
T ss_pred HHhCCCcEEEEEeHHHH
Confidence 7776554 44568884
No 305
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=95.66 E-value=0.12 Score=61.09 Aligned_cols=149 Identities=15% Similarity=0.122 Sum_probs=78.8
Q ss_pred eEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHhC
Q 002657 176 GIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDLRLENIQEIIGGKIGLMNESWKSKSLQEKSLDIFKILG 255 (896)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 255 (896)
+-|.++|++|+|||++|+.+++.. ...| +.++.+ ++.. .. ...........+...-.
T Consensus 186 ~gill~G~~G~GKt~~~~~~a~~~---~~~f---~~is~~------~~~~----~~-------~g~~~~~~~~~f~~a~~ 242 (644)
T PRK10733 186 KGVLMVGPPGTGKTLLAKAIAGEA---KVPF---FTISGS------DFVE----MF-------VGVGASRVRDMFEQAKK 242 (644)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHc---CCCE---EEEehH------HhHH----hh-------hcccHHHHHHHHHHHHh
Confidence 458899999999999999998876 2232 222221 1111 00 01112222233333344
Q ss_pred CceEEEEEecCCCccc------------c----ccccccCCC-CCCCCcEEEEecCCHHHHh--hh---ccCcceeccCC
Q 002657 256 EKKFVLLLDDLWQRVD------------L----TKVGVPLPS-PQSSASKVVFTTRSEEICG--LM---EAQKKFKVACL 313 (896)
Q Consensus 256 ~kr~LlVlDdv~~~~~------------~----~~l~~~~~~-~~~~~s~iivTtR~~~v~~--~~---~~~~~~~l~~L 313 (896)
..+.+|++|+++.... . ..+...+.. ....+.-||.||...+... .. .-+..+.+...
T Consensus 243 ~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~P 322 (644)
T PRK10733 243 AAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLP 322 (644)
T ss_pred cCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCC
Confidence 5789999999964210 1 111111110 1233455666777665422 11 12456788888
Q ss_pred ChHhHHHHHHHHhcCcccCCCCChHHHHHHHHHHhCCC
Q 002657 314 SDKDAWELFCHKVGEETLNNHPDIPELAQTVAKECGGM 351 (896)
Q Consensus 314 ~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~Gl 351 (896)
+.++-.+++..+........+-+ ...+++.+.|.
T Consensus 323 d~~~R~~Il~~~~~~~~l~~~~d----~~~la~~t~G~ 356 (644)
T PRK10733 323 DVRGREQILKVHMRRVPLAPDID----AAIIARGTPGF 356 (644)
T ss_pred CHHHHHHHHHHHhhcCCCCCcCC----HHHHHhhCCCC
Confidence 88888888887765443222222 23466666653
No 306
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=95.65 E-value=0.026 Score=67.51 Aligned_cols=114 Identities=18% Similarity=0.194 Sum_probs=59.0
Q ss_pred CceEEEEEecCCCccc---cccc----cccCCCCCCCCcEEEEecCCHHHHhhhccCcceeccCCCh-HhHHHHHHHHhc
Q 002657 256 EKKFVLLLDDLWQRVD---LTKV----GVPLPSPQSSASKVVFTTRSEEICGLMEAQKKFKVACLSD-KDAWELFCHKVG 327 (896)
Q Consensus 256 ~kr~LlVlDdv~~~~~---~~~l----~~~~~~~~~~~s~iivTtR~~~v~~~~~~~~~~~l~~L~~-~e~~~Lf~~~~~ 327 (896)
..+-|+++|++-...+ -..+ ...+ ...|+.+|+||...++.........+.-..+.. .+......+...
T Consensus 401 ~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l---~~~g~~viitTH~~eL~~~~~~~~~v~~~~~~~d~~~l~p~Ykl~~ 477 (771)
T TIGR01069 401 TENSLVLFDELGAGTDPDEGSALAISILEYL---LKQNAQVLITTHYKELKALMYNNEGVENASVLFDEETLSPTYKLLK 477 (771)
T ss_pred CCCcEEEecCCCCCCCHHHHHHHHHHHHHHH---HhcCCEEEEECChHHHHHHhcCCCCeEEeEEEEcCCCCceEEEECC
Confidence 4789999999964322 2222 2222 235789999999988754332211111111110 111110001110
Q ss_pred CcccCCCCChHHHHHHHHHHhCCCchHHHHHHHhhcCCCCHHHHHHHHHHHhc
Q 002657 328 EETLNNHPDIPELAQTVAKECGGMPLALITIGRAMSCKRTPQEWRHAIQVLRT 380 (896)
Q Consensus 328 ~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~~~~l~~~~~~~~w~~~l~~l~~ 380 (896)
+ . +. ...|-.|++++ |+|-.|..-|..+.. ........++..+..
T Consensus 478 G----~-~g-~S~a~~iA~~~-Glp~~ii~~A~~~~~-~~~~~~~~li~~L~~ 522 (771)
T TIGR01069 478 G----I-PG-ESYAFEIAQRY-GIPHFIIEQAKTFYG-EFKEEINVLIEKLSA 522 (771)
T ss_pred C----C-CC-CcHHHHHHHHh-CcCHHHHHHHHHHHH-hhHHHHHHHHHHHHH
Confidence 0 0 11 33578888877 788888887777654 344456666655544
No 307
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.64 E-value=0.065 Score=54.89 Aligned_cols=88 Identities=15% Similarity=0.182 Sum_probs=55.5
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHhcCCCCcc----------------
Q 002657 174 PAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDLRLENIQEIIGGKIGLMNES---------------- 237 (896)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---------------- 237 (896)
..+++.|+|.+|+|||++|.++..... ..-..++|++..+. ..++.+.+ ++++.....
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~---~~g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~ 97 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGAL---KQGKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEG 97 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHH---hCCCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCceEEeccccc
Confidence 568999999999999999999866541 23457888888654 45555553 333321110
Q ss_pred --ccccCHHHHHHHHHHHhCC-ceEEEEEecCC
Q 002657 238 --WKSKSLQEKSLDIFKILGE-KKFVLLLDDLW 267 (896)
Q Consensus 238 --~~~~~~~~~~~~l~~~l~~-kr~LlVlDdv~ 267 (896)
......+.....+.+.+.. +.-++|+|.+-
T Consensus 98 ~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 98 FEWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred cccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 0112334566666666653 55588999874
No 308
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.64 E-value=0.045 Score=53.01 Aligned_cols=125 Identities=18% Similarity=0.189 Sum_probs=69.0
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEe-------------------CCcc----------------
Q 002657 174 PAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVV-------------------SKDL---------------- 218 (896)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~-------------------~~~~---------------- 218 (896)
.-.|++|+|++|+|||||.+.+..-. ..=+..+|+.- -|.|
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRclN~LE----~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap 102 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCLNGLE----EPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAP 102 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCc----CCCCceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhh
Confidence 45799999999999999999986543 22233444432 1111
Q ss_pred ---------CHHHHHHHHHHhcCCCCcc--c--cccCHHHHHHHHHHHhCCceEEEEEecCCCccc---cccccccCCCC
Q 002657 219 ---------RLENIQEIIGGKIGLMNES--W--KSKSLQEKSLDIFKILGEKKFVLLLDDLWQRVD---LTKVGVPLPSP 282 (896)
Q Consensus 219 ---------~~~~~~~~i~~~l~~~~~~--~--~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~---~~~l~~~~~~~ 282 (896)
..++...++++.+++.... + .-..-++..-.|.+.|.=++=++.+|..-+.-| ..++...+..-
T Consensus 103 ~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~L 182 (240)
T COG1126 103 VKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDL 182 (240)
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHH
Confidence 1233444455555543211 0 112223333456777777888999999854322 22222222112
Q ss_pred CCCCcEEEEecCCHHHHhhh
Q 002657 283 QSSASKVVFTTRSEEICGLM 302 (896)
Q Consensus 283 ~~~~s~iivTtR~~~v~~~~ 302 (896)
...|-..|+.|.....|+..
T Consensus 183 A~eGmTMivVTHEM~FAr~V 202 (240)
T COG1126 183 AEEGMTMIIVTHEMGFAREV 202 (240)
T ss_pred HHcCCeEEEEechhHHHHHh
Confidence 34566677777777666553
No 309
>PRK13531 regulatory ATPase RavA; Provisional
Probab=95.61 E-value=0.033 Score=61.57 Aligned_cols=42 Identities=14% Similarity=0.173 Sum_probs=36.9
Q ss_pred ccchHHHHHHHHHHhccCCCeEEEEEcCCCchHHHHHHHHHhhh
Q 002657 156 VVGLQSQLEQVWRCLVEEPAGIVGLYGMGGVGKTTLLTHINNKF 199 (896)
Q Consensus 156 ~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (896)
++||++.++.+...+..+ .-|.|.|++|+|||++|+.+....
T Consensus 22 i~gre~vI~lll~aalag--~hVLL~GpPGTGKT~LAraLa~~~ 63 (498)
T PRK13531 22 LYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAF 63 (498)
T ss_pred ccCcHHHHHHHHHHHccC--CCEEEECCCChhHHHHHHHHHHHh
Confidence 899999999998888664 457799999999999999999876
No 310
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=95.57 E-value=0.056 Score=55.95 Aligned_cols=35 Identities=26% Similarity=0.268 Sum_probs=29.1
Q ss_pred HHHHHhccCCCeEEEEEcCCCchHHHHHHHHHhhh
Q 002657 165 QVWRCLVEEPAGIVGLYGMGGVGKTTLLTHINNKF 199 (896)
Q Consensus 165 ~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (896)
+..+++.+.+..+|.|.|.+|+|||||+..+.+..
T Consensus 94 ~~r~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l 128 (290)
T PRK10463 94 RNRARFAARKQLVLNLVSSPGSGKTTLLTETLMRL 128 (290)
T ss_pred HHHHHHHhcCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34444555688999999999999999999999876
No 311
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=95.54 E-value=0.066 Score=55.45 Aligned_cols=125 Identities=14% Similarity=0.085 Sum_probs=67.7
Q ss_pred HHHHHHHhcc-CCCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEE---eCCccCHHHHHHHHHHhcCC-CCcc
Q 002657 163 LEQVWRCLVE-EPAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVV---VSKDLRLENIQEIIGGKIGL-MNES 237 (896)
Q Consensus 163 ~~~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~---~~~~~~~~~~~~~i~~~l~~-~~~~ 237 (896)
.+.++..+.+ ....-++|+|+.|+|||||.+.+.... ......+++. +...... .+++..... +...
T Consensus 98 ~~~~l~~l~~~~~~~~~~i~g~~g~GKttl~~~l~~~~----~~~~G~i~~~g~~v~~~d~~----~ei~~~~~~~~q~~ 169 (270)
T TIGR02858 98 ADKLLPYLVRNNRVLNTLIISPPQCGKTTLLRDLARIL----STGISQLGLRGKKVGIVDER----SEIAGCVNGVPQHD 169 (270)
T ss_pred HHHHHHHHHhCCCeeEEEEEcCCCCCHHHHHHHHhCcc----CCCCceEEECCEEeecchhH----HHHHHHhccccccc
Confidence 3444444443 445789999999999999999999876 2223333332 1111111 233322211 1110
Q ss_pred ----ccccCHHHHHHHHHHHhC-CceEEEEEecCCCccccccccccCCCCCCCCcEEEEecCCHHHH
Q 002657 238 ----WKSKSLQEKSLDIFKILG-EKKFVLLLDDLWQRVDLTKVGVPLPSPQSSASKVVFTTRSEEIC 299 (896)
Q Consensus 238 ----~~~~~~~~~~~~l~~~l~-~kr~LlVlDdv~~~~~~~~l~~~~~~~~~~~s~iivTtR~~~v~ 299 (896)
.+..+.......+...+. ..+=++++|.+-..+.+..+...+ ..|..||+||.+..+.
T Consensus 170 ~~~r~~v~~~~~k~~~~~~~i~~~~P~villDE~~~~e~~~~l~~~~----~~G~~vI~ttH~~~~~ 232 (270)
T TIGR02858 170 VGIRTDVLDGCPKAEGMMMLIRSMSPDVIVVDEIGREEDVEALLEAL----HAGVSIIATAHGRDVE 232 (270)
T ss_pred ccccccccccchHHHHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHH----hCCCEEEEEechhHHH
Confidence 011111111223344433 578899999997665555554433 2477899999977654
No 312
>PHA00729 NTP-binding motif containing protein
Probab=95.54 E-value=0.018 Score=57.25 Aligned_cols=36 Identities=17% Similarity=0.235 Sum_probs=29.1
Q ss_pred HHHHHHhccCCCeEEEEEcCCCchHHHHHHHHHhhh
Q 002657 164 EQVWRCLVEEPAGIVGLYGMGGVGKTTLLTHINNKF 199 (896)
Q Consensus 164 ~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (896)
.++++.+...+...|.|.|.+|+||||||..+.+..
T Consensus 6 k~~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~l 41 (226)
T PHA00729 6 KKIVSAYNNNGFVSAVIFGKQGSGKTTYALKVARDV 41 (226)
T ss_pred HHHHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHHH
Confidence 345555666666789999999999999999999875
No 313
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.48 E-value=0.024 Score=51.77 Aligned_cols=103 Identities=19% Similarity=0.329 Sum_probs=63.8
Q ss_pred CCCCCCccEEecccccccccchhhhccCCCCcEEEccCCcccccccc-cccCCCCCCEEeccCCCccccchh-hhcCCCC
Q 002657 532 IPKCPHLLTLFLNSNELKIITNDFFQFMPSLKVLSLSRNRRLTNLQL-GISKLVSLQHLDLSLTNIEKLSGE-LKALVNL 609 (896)
Q Consensus 532 ~~~~~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~Ls~~~~i~~lp~-~i~~L~~L~~L~Ls~~~i~~lp~~-l~~L~~L 609 (896)
+..|++|+.+.+.. .+..++...|.++++|+.+.+.++ +..++. .+.++.+|+.+.+.. .+..++.. +..+++|
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc--ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 67888999999875 577888888999999999999775 555543 577787899999976 55555543 5668999
Q ss_pred CEeeccccccccCCcHHHHhccccccEEEeec
Q 002657 610 KCLNLEYTWSLVTIPQQLIASFLRLHVLRMFG 641 (896)
Q Consensus 610 ~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~ 641 (896)
+.+++..+ +..++...+.++ +|+.+.+..
T Consensus 84 ~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 84 KNIDIPSN--ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp CEEEETTT---BEEHTTTTTT--T--EEE-TT
T ss_pred cccccCcc--ccEEchhhhcCC-CceEEEECC
Confidence 99998654 566766667776 888887653
No 314
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.45 E-value=0.05 Score=52.26 Aligned_cols=116 Identities=14% Similarity=0.179 Sum_probs=59.7
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHhhhccCCCC--CC---eEEEEEeCCccC--HHHHHHHHHHhcCCCCccccccCHHHH
Q 002657 174 PAGIVGLYGMGGVGKTTLLTHINNKFLQVPND--FD---CVIWVVVSKDLR--LENIQEIIGGKIGLMNESWKSKSLQEK 246 (896)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~--f~---~~~wv~~~~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~ 246 (896)
+-.+++|+|..|.|||||++.+........+. ++ .+.++ .+... ...+...+.-. ... .-..-+..
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~--~q~~~~~~~tv~~nl~~~---~~~--~LS~G~~~ 98 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFL--PQRPYLPLGTLREQLIYP---WDD--VLSGGEQQ 98 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEE--CCCCccccccHHHHhhcc---CCC--CCCHHHHH
Confidence 55689999999999999999998865211111 11 12222 22221 11222222210 110 11122233
Q ss_pred HHHHHHHhCCceEEEEEecCCCccc---cccccccCCCCCCCCcEEEEecCCHHHH
Q 002657 247 SLDIFKILGEKKFVLLLDDLWQRVD---LTKVGVPLPSPQSSASKVVFTTRSEEIC 299 (896)
Q Consensus 247 ~~~l~~~l~~kr~LlVlDdv~~~~~---~~~l~~~~~~~~~~~s~iivTtR~~~v~ 299 (896)
.-.+.+.+-.++=++++|+.-..-+ ...+...+. .. +..||++|.+....
T Consensus 99 rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~-~~--~~tiiivsh~~~~~ 151 (166)
T cd03223 99 RLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLK-EL--GITVISVGHRPSLW 151 (166)
T ss_pred HHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHH-Hh--CCEEEEEeCChhHH
Confidence 3345555556777889999854322 222322332 11 35688888877654
No 315
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.45 E-value=0.011 Score=54.00 Aligned_cols=22 Identities=32% Similarity=0.738 Sum_probs=20.1
Q ss_pred EEEEcCCCchHHHHHHHHHhhh
Q 002657 178 VGLYGMGGVGKTTLLTHINNKF 199 (896)
Q Consensus 178 i~I~G~gGiGKTtLa~~v~~~~ 199 (896)
|+|.|++|+||||+|+.+.+..
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999998873
No 316
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.42 E-value=0.008 Score=35.45 Aligned_cols=21 Identities=38% Similarity=0.494 Sum_probs=14.1
Q ss_pred CCcEEEccCCcccccccccccC
Q 002657 561 SLKVLSLSRNRRLTNLQLGISK 582 (896)
Q Consensus 561 ~L~~L~Ls~~~~i~~lp~~i~~ 582 (896)
+|++|||++| .++.+|.+|++
T Consensus 1 ~L~~Ldls~n-~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGN-NLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSS-EESEEGTTTTT
T ss_pred CccEEECCCC-cCEeCChhhcC
Confidence 4677777777 66677766554
No 317
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=95.42 E-value=0.11 Score=55.72 Aligned_cols=59 Identities=22% Similarity=0.329 Sum_probs=43.2
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHhhhccCC----CCCCeEEEEEeCCccCHHHHHHHHHHhcCCC
Q 002657 174 PAGIVGLYGMGGVGKTTLLTHINNKFLQVP----NDFDCVIWVVVSKDLRLENIQEIIGGKIGLM 234 (896)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 234 (896)
...++-|.|.+|+|||+|+..++-.. ... ..-..++||+....+++..+ .+|++.++..
T Consensus 122 ~g~i~~i~G~~g~GKT~l~~~l~~~~-~~~~~~gg~~g~vlyIdtE~~f~~eRl-~qia~~~~~~ 184 (342)
T PLN03186 122 TGSITEIYGEFRTGKTQLCHTLCVTC-QLPLDQGGGEGKAMYIDTEGTFRPQRL-IQIAERFGLN 184 (342)
T ss_pred CceEEEEECCCCCCccHHHHHHHHHh-hcchhhCCCCceEEEEECCCCccHHHH-HHHHHHcCCC
Confidence 46788899999999999999887543 111 12237899999999888776 4566666543
No 318
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.41 E-value=0.044 Score=51.18 Aligned_cols=103 Identities=23% Similarity=0.322 Sum_probs=56.4
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHH
Q 002657 174 PAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDLRLENIQEIIGGKIGLMNESWKSKSLQEKSLDIFKI 253 (896)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 253 (896)
.-.+++|+|..|.|||||++.+.... ......+|+.-. ..++... .-..-+...-.+...
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~----~~~~G~i~~~~~-------------~~i~~~~---~lS~G~~~rv~lara 84 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGEL----EPDEGIVTWGST-------------VKIGYFE---QLSGGEKMRLALAKL 84 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCC----CCCceEEEECCe-------------EEEEEEc---cCCHHHHHHHHHHHH
Confidence 45789999999999999999998765 222333443210 0000000 011112223334555
Q ss_pred hCCceEEEEEecCCCc---cccccccccCCCCCCCCcEEEEecCCHHHH
Q 002657 254 LGEKKFVLLLDDLWQR---VDLTKVGVPLPSPQSSASKVVFTTRSEEIC 299 (896)
Q Consensus 254 l~~kr~LlVlDdv~~~---~~~~~l~~~~~~~~~~~s~iivTtR~~~v~ 299 (896)
+-.++-++++|+.-.. .....+...+. .. +..||++|.+.+..
T Consensus 85 l~~~p~illlDEP~~~LD~~~~~~l~~~l~-~~--~~til~~th~~~~~ 130 (144)
T cd03221 85 LLENPNLLLLDEPTNHLDLESIEALEEALK-EY--PGTVILVSHDRYFL 130 (144)
T ss_pred HhcCCCEEEEeCCccCCCHHHHHHHHHHHH-Hc--CCEEEEEECCHHHH
Confidence 5667778999998532 22333333332 11 24688888776554
No 319
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.41 E-value=0.15 Score=58.33 Aligned_cols=90 Identities=18% Similarity=0.220 Sum_probs=62.0
Q ss_pred ccchHHHHHHHHHHhcc---------C---CCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHH
Q 002657 156 VVGLQSQLEQVWRCLVE---------E---PAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDLRLENI 223 (896)
Q Consensus 156 ~vGr~~~~~~l~~~L~~---------~---~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 223 (896)
+=|.++.+.+|.+-+.- . +.+-|.++|++|.|||-+|++|+-+. . ..|++|-.+ ++
T Consensus 674 VGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEc-s-------L~FlSVKGP----EL 741 (953)
T KOG0736|consen 674 VGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATEC-S-------LNFLSVKGP----EL 741 (953)
T ss_pred ccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhc-e-------eeEEeecCH----HH
Confidence 45788888888887753 1 35678899999999999999999876 1 345665543 11
Q ss_pred HHHHHHhcCCCCccccccCHHHHHHHHHHHhCCceEEEEEecCCC
Q 002657 224 QEIIGGKIGLMNESWKSKSLQEKSLDIFKILGEKKFVLLLDDLWQ 268 (896)
Q Consensus 224 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~ 268 (896)
+... -..+++...+.+.+.-..++++|.+|.+++
T Consensus 742 LNMY-----------VGqSE~NVR~VFerAR~A~PCVIFFDELDS 775 (953)
T KOG0736|consen 742 LNMY-----------VGQSEENVREVFERARSAAPCVIFFDELDS 775 (953)
T ss_pred HHHH-----------hcchHHHHHHHHHHhhccCCeEEEeccccc
Confidence 1111 223455555555556667999999999974
No 320
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=95.41 E-value=0.047 Score=65.01 Aligned_cols=44 Identities=25% Similarity=0.426 Sum_probs=36.8
Q ss_pred ccchHHHHHHHHHHhcc---------CCCeEEEEEcCCCchHHHHHHHHHhhh
Q 002657 156 VVGLQSQLEQVWRCLVE---------EPAGIVGLYGMGGVGKTTLLTHINNKF 199 (896)
Q Consensus 156 ~vGr~~~~~~l~~~L~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (896)
++|.+..++.+.+.+.. .....+.++|++|+|||++|+.++...
T Consensus 460 ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l 512 (758)
T PRK11034 460 VFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_pred EeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999988888762 134578899999999999999998876
No 321
>PRK07667 uridine kinase; Provisional
Probab=95.39 E-value=0.021 Score=56.39 Aligned_cols=37 Identities=22% Similarity=0.426 Sum_probs=29.8
Q ss_pred HHHHHHHhcc--CCCeEEEEEcCCCchHHHHHHHHHhhh
Q 002657 163 LEQVWRCLVE--EPAGIVGLYGMGGVGKTTLLTHINNKF 199 (896)
Q Consensus 163 ~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (896)
.+.|.+.+.. +...+|+|-|.+|+||||+|+.+....
T Consensus 3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l 41 (193)
T PRK07667 3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENM 41 (193)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 3456666654 355799999999999999999999877
No 322
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=95.39 E-value=0.1 Score=53.24 Aligned_cols=53 Identities=32% Similarity=0.363 Sum_probs=35.4
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHhcC
Q 002657 174 PAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDLRLENIQEIIGGKIG 232 (896)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 232 (896)
.-.++.|.|.+|+||||+|.++..... ..-..++|++... +..++... +++++
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~---~~g~~~~~is~e~--~~~~i~~~-~~~~g 71 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGL---RDGDPVIYVTTEE--SRESIIRQ-AAQFG 71 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHH---hcCCeEEEEEccC--CHHHHHHH-HHHhC
Confidence 567999999999999999998765541 1234678887644 33444333 33443
No 323
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=95.39 E-value=0.11 Score=55.71 Aligned_cols=58 Identities=22% Similarity=0.344 Sum_probs=42.0
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHhhhccCC----CCCCeEEEEEeCCccCHHHHHHHHHHhcCC
Q 002657 174 PAGIVGLYGMGGVGKTTLLTHINNKFLQVP----NDFDCVIWVVVSKDLRLENIQEIIGGKIGL 233 (896)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 233 (896)
...++-|+|.+|+|||+++.+++... ... ..-..++||+....++...+. ++++.++.
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~~-~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~gl 155 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVNV-QLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARGL 155 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh-cCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcCC
Confidence 46788999999999999999997764 211 011378999998888877654 44555543
No 324
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.39 E-value=0.077 Score=57.01 Aligned_cols=89 Identities=18% Similarity=0.165 Sum_probs=50.5
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCc-cCHHHHHHHHHHhcCCCCccccccCHHHHHHHHHH
Q 002657 174 PAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKD-LRLENIQEIIGGKIGLMNESWKSKSLQEKSLDIFK 252 (896)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 252 (896)
+.++|+++|++|+||||++..++... . ...+ .+..++.... ....+-++..++.++.+.. ...+...+...+..
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L-~-~~Gk-kVglI~aDt~RiaAvEQLk~yae~lgipv~--v~~d~~~L~~aL~~ 314 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQF-H-GKKK-TVGFITTDHSRIGTVQQLQDYVKTIGFEVI--AVRDEAAMTRALTY 314 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHH-H-HcCC-cEEEEecCCcchHHHHHHHHHhhhcCCcEE--ecCCHHHHHHHHHH
Confidence 34799999999999999999998876 2 2222 3445554322 1233334445555554431 12345555554544
Q ss_pred HhCC-ceEEEEEecCC
Q 002657 253 ILGE-KKFVLLLDDLW 267 (896)
Q Consensus 253 ~l~~-kr~LlVlDdv~ 267 (896)
.-.. +.=++++|-.-
T Consensus 315 lk~~~~~DvVLIDTaG 330 (436)
T PRK11889 315 FKEEARVDYILIDTAG 330 (436)
T ss_pred HHhccCCCEEEEeCcc
Confidence 3321 22367778763
No 325
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.38 E-value=0.079 Score=55.19 Aligned_cols=90 Identities=20% Similarity=0.199 Sum_probs=49.9
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCH--HHHHHHHHHhcCCCCcc-ccccCHHH-HHHH
Q 002657 174 PAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDLRL--ENIQEIIGGKIGLMNES-WKSKSLQE-KSLD 249 (896)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~--~~~~~~i~~~l~~~~~~-~~~~~~~~-~~~~ 249 (896)
+.++|.++|++|+||||++..++... . ..-..+.+++... +.. .+-+...++..+.+.-. ....+... ....
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l-~--~~g~~V~li~~D~-~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~ 146 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKL-K--KQGKSVLLAAGDT-FRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDA 146 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH-H--hcCCEEEEEeCCC-CCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHH
Confidence 46899999999999999999998877 2 2223566665442 322 23344455555532110 01122222 2233
Q ss_pred HHHHhCCceEEEEEecCC
Q 002657 250 IFKILGEKKFVLLLDDLW 267 (896)
Q Consensus 250 l~~~l~~kr~LlVlDdv~ 267 (896)
+.....+..=++++|-.-
T Consensus 147 l~~~~~~~~D~ViIDT~G 164 (272)
T TIGR00064 147 IQKAKARNIDVVLIDTAG 164 (272)
T ss_pred HHHHHHCCCCEEEEeCCC
Confidence 444333444577788773
No 326
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.35 E-value=0.02 Score=55.53 Aligned_cols=120 Identities=22% Similarity=0.215 Sum_probs=60.9
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHhcCCCCc---cccc--------cC
Q 002657 174 PAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDLRLENIQEIIGGKIGLMNE---SWKS--------KS 242 (896)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---~~~~--------~~ 242 (896)
+-.+++|+|..|.|||||++.++... ......+++.-....... ..+...++.-.+ -... .+
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~----~~~~G~i~~~g~~~~~~~---~~~~~~i~~~~q~~~~~~~~tv~~~~~LS 97 (173)
T cd03230 25 KGEIYGLLGPNGAGKTTLIKIILGLL----KPDSGEIKVLGKDIKKEP---EEVKRRIGYLPEEPSLYENLTVRENLKLS 97 (173)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC----CCCCeEEEECCEEcccch---HhhhccEEEEecCCccccCCcHHHHhhcC
Confidence 45689999999999999999998764 122333443211000000 111111111000 0000 11
Q ss_pred -HHHHHHHHHHHhCCceEEEEEecCCCccc---cccccccCCCCCCCCcEEEEecCCHHHHh
Q 002657 243 -LQEKSLDIFKILGEKKFVLLLDDLWQRVD---LTKVGVPLPSPQSSASKVVFTTRSEEICG 300 (896)
Q Consensus 243 -~~~~~~~l~~~l~~kr~LlVlDdv~~~~~---~~~l~~~~~~~~~~~s~iivTtR~~~v~~ 300 (896)
-+...-.+...+-.++=++++|+.-..-| ...+...+......|..||++|.+.....
T Consensus 98 ~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~ 159 (173)
T cd03230 98 GGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAE 159 (173)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHH
Confidence 11222345566667788999999854322 22222222211123677888888876544
No 327
>PRK14974 cell division protein FtsY; Provisional
Probab=95.34 E-value=0.12 Score=55.38 Aligned_cols=90 Identities=18% Similarity=0.152 Sum_probs=49.6
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCccC--HHHHHHHHHHhcCCCCcc-ccccCHHHHH-HH
Q 002657 174 PAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDLR--LENIQEIIGGKIGLMNES-WKSKSLQEKS-LD 249 (896)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~--~~~~~~~i~~~l~~~~~~-~~~~~~~~~~-~~ 249 (896)
+..+|.++|++|+||||++..++.... ...+ .++.+.. +.+. ..+.++..+..++.+... ....+....+ ..
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~--~~g~-~V~li~~-Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~a 214 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLK--KNGF-SVVIAAG-DTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDA 214 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH--HcCC-eEEEecC-CcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHH
Confidence 467999999999999999999887762 2233 3334432 2222 334456667777654311 1122222222 22
Q ss_pred HHHHhCCceEEEEEecCC
Q 002657 250 IFKILGEKKFVLLLDDLW 267 (896)
Q Consensus 250 l~~~l~~kr~LlVlDdv~ 267 (896)
+...-....=++++|-.-
T Consensus 215 i~~~~~~~~DvVLIDTaG 232 (336)
T PRK14974 215 IEHAKARGIDVVLIDTAG 232 (336)
T ss_pred HHHHHhCCCCEEEEECCC
Confidence 222222222388888874
No 328
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.33 E-value=0.05 Score=52.59 Aligned_cols=126 Identities=21% Similarity=0.226 Sum_probs=63.5
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCC--ccCHHHHHHHHHHhcCCCCc--cccc-------cC
Q 002657 174 PAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSK--DLRLENIQEIIGGKIGLMNE--SWKS-------KS 242 (896)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~--~~~~~~~~~~i~~~l~~~~~--~~~~-------~~ 242 (896)
.-.+++|+|+.|.|||||++.++.-. ......+++.-.. ....... ...++.-.+ .... .+
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~~----~~~~G~i~~~g~~~~~~~~~~~----~~~i~~~~~~~~~~~~t~~e~lLS 98 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRLY----DPTSGEILIDGVDLRDLDLESL----RKNIAYVPQDPFLFSGTIRENILS 98 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC----CCCCCEEEECCEEhhhcCHHHH----HhhEEEEcCCchhccchHHHHhhC
Confidence 56799999999999999999998865 1223333332110 0011111 111111000 0000 11
Q ss_pred -HHHHHHHHHHHhCCceEEEEEecCCCccc---cccccccCCCCCCCCcEEEEecCCHHHHhhhccCcceec
Q 002657 243 -LQEKSLDIFKILGEKKFVLLLDDLWQRVD---LTKVGVPLPSPQSSASKVVFTTRSEEICGLMEAQKKFKV 310 (896)
Q Consensus 243 -~~~~~~~l~~~l~~kr~LlVlDdv~~~~~---~~~l~~~~~~~~~~~s~iivTtR~~~v~~~~~~~~~~~l 310 (896)
-+...-.+...+-.++-++++|+....-+ .+.+...+. ....+..||++|.+.+.... .+..+.+
T Consensus 99 ~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~-~~~~~~tii~~sh~~~~~~~--~d~~~~l 167 (171)
T cd03228 99 GGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALR-ALAKGKTVIVIAHRLSTIRD--ADRIIVL 167 (171)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHH-HhcCCCEEEEEecCHHHHHh--CCEEEEE
Confidence 11222335555666778999999854322 222222222 11224678888888766543 3444443
No 329
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.32 E-value=0.014 Score=46.56 Aligned_cols=23 Identities=26% Similarity=0.575 Sum_probs=20.8
Q ss_pred EEEEEcCCCchHHHHHHHHHhhh
Q 002657 177 IVGLYGMGGVGKTTLLTHINNKF 199 (896)
Q Consensus 177 vi~I~G~gGiGKTtLa~~v~~~~ 199 (896)
+|+|.|.+|+||||+++.+.+.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998874
No 330
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=95.29 E-value=0.027 Score=54.60 Aligned_cols=74 Identities=27% Similarity=0.350 Sum_probs=42.9
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHH
Q 002657 174 PAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDLRLENIQEIIGGKIGLMNESWKSKSLQEKSLDIFKI 253 (896)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 253 (896)
...-+.++|.+|+|||.||..+.+... ...+ .+.|+. ..+++..+-..- ......... +.
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~--~~g~-~v~f~~------~~~L~~~l~~~~-------~~~~~~~~~----~~ 105 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAI--RKGY-SVLFIT------ASDLLDELKQSR-------SDGSYEELL----KR 105 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHH--HTT---EEEEE------HHHHHHHHHCCH-------CCTTHCHHH----HH
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhc--cCCc-ceeEee------cCceeccccccc-------cccchhhhc----Cc
Confidence 346799999999999999999998873 2333 356664 445555554321 111222222 22
Q ss_pred hCCceEEEEEecCCC
Q 002657 254 LGEKKFVLLLDDLWQ 268 (896)
Q Consensus 254 l~~kr~LlVlDdv~~ 268 (896)
+.+ -=||||||+-.
T Consensus 106 l~~-~dlLilDDlG~ 119 (178)
T PF01695_consen 106 LKR-VDLLILDDLGY 119 (178)
T ss_dssp HHT-SSCEEEETCTS
T ss_pred ccc-ccEecccccce
Confidence 322 34788999953
No 331
>PRK08233 hypothetical protein; Provisional
Probab=95.27 E-value=0.015 Score=56.94 Aligned_cols=25 Identities=32% Similarity=0.529 Sum_probs=22.9
Q ss_pred CeEEEEEcCCCchHHHHHHHHHhhh
Q 002657 175 AGIVGLYGMGGVGKTTLLTHINNKF 199 (896)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (896)
..+|+|.|.+|+||||+|+.++...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l 27 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKL 27 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhC
Confidence 4689999999999999999999876
No 332
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=95.26 E-value=0.08 Score=54.64 Aligned_cols=89 Identities=18% Similarity=0.193 Sum_probs=57.6
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHh-cCCCC--ccccccCHHHHHHHH
Q 002657 174 PAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDLRLENIQEIIGGK-IGLMN--ESWKSKSLQEKSLDI 250 (896)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~-l~~~~--~~~~~~~~~~~~~~l 250 (896)
.-+++=|+|+.|.||||+|.+++-.. +..-..++|++.-+.+++..+.. ++.. +..-. .........+.+..+
T Consensus 59 ~g~ItEiyG~~gsGKT~lal~~~~~a---q~~g~~a~fIDtE~~l~p~r~~~-l~~~~~d~l~v~~~~~~e~q~~i~~~~ 134 (279)
T COG0468 59 RGRITEIYGPESSGKTTLALQLVANA---QKPGGKAAFIDTEHALDPERAKQ-LGVDLLDNLLVSQPDTGEQQLEIAEKL 134 (279)
T ss_pred cceEEEEecCCCcchhhHHHHHHHHh---hcCCCeEEEEeCCCCCCHHHHHH-HHHhhhcceeEecCCCHHHHHHHHHHH
Confidence 56788899999999999999987765 34445889999999988776543 3333 22100 001112222344444
Q ss_pred HHHhCCceEEEEEecC
Q 002657 251 FKILGEKKFVLLLDDL 266 (896)
Q Consensus 251 ~~~l~~kr~LlVlDdv 266 (896)
......+--|+|+|.+
T Consensus 135 ~~~~~~~i~LvVVDSv 150 (279)
T COG0468 135 ARSGAEKIDLLVVDSV 150 (279)
T ss_pred HHhccCCCCEEEEecC
Confidence 5544444669999998
No 333
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=95.26 E-value=0.035 Score=57.63 Aligned_cols=124 Identities=18% Similarity=0.220 Sum_probs=66.7
Q ss_pred cchHHHHHHHHHHhccCCCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHhcCCCCc
Q 002657 157 VGLQSQLEQVWRCLVEEPAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDLRLENIQEIIGGKIGLMNE 236 (896)
Q Consensus 157 vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~ 236 (896)
.|...+..+.+..+......+|.|.|..|.||||+++.+.+... ..-..++.+.-..++.... ..++..
T Consensus 62 lg~~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l~all~~i~---~~~~~iitiEdp~E~~~~~-----~~q~~v--- 130 (264)
T cd01129 62 LGLKPENLEIFRKLLEKPHGIILVTGPTGSGKTTTLYSALSELN---TPEKNIITVEDPVEYQIPG-----INQVQV--- 130 (264)
T ss_pred cCCCHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHhhhC---CCCCeEEEECCCceecCCC-----ceEEEe---
Confidence 45444444444444445567899999999999999998877651 1111233322111211110 011111
Q ss_pred cccccCHHHHHHHHHHHhCCceEEEEEecCCCccccccccccCCCCCCCCcEEEEecCCHH
Q 002657 237 SWKSKSLQEKSLDIFKILGEKKFVLLLDDLWQRVDLTKVGVPLPSPQSSASKVVFTTRSEE 297 (896)
Q Consensus 237 ~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~~~s~iivTtR~~~ 297 (896)
...........++..++..+=.++++++.+.+....+..+. ..|..++-|....+
T Consensus 131 --~~~~~~~~~~~l~~~lR~~PD~i~vgEiR~~e~a~~~~~aa----~tGh~v~tTlHa~~ 185 (264)
T cd01129 131 --NEKAGLTFARGLRAILRQDPDIIMVGEIRDAETAEIAVQAA----LTGHLVLSTLHTND 185 (264)
T ss_pred --CCcCCcCHHHHHHHHhccCCCEEEeccCCCHHHHHHHHHHH----HcCCcEEEEeccCC
Confidence 11111234566777888888899999998776544332222 22444555555443
No 334
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=95.22 E-value=1.2 Score=48.28 Aligned_cols=57 Identities=16% Similarity=0.264 Sum_probs=38.1
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCcc--CHHHHHHHHHHhcCCC
Q 002657 174 PAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDL--RLENIQEIIGGKIGLM 234 (896)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~l~~~ 234 (896)
...||-.+|.-|.||||.|-.+++.+. . .....-+...+.+ ..-+-++.++++.+.+
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lk---k-~~~kvllVaaD~~RpAA~eQL~~La~q~~v~ 157 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLK---K-KGKKVLLVAADTYRPAAIEQLKQLAEQVGVP 157 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHH---H-cCCceEEEecccCChHHHHHHHHHHHHcCCc
Confidence 467899999999999999999999983 2 2222222222322 3345567777777654
No 335
>PRK04328 hypothetical protein; Provisional
Probab=95.22 E-value=0.078 Score=54.68 Aligned_cols=40 Identities=20% Similarity=0.169 Sum_probs=30.9
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCC
Q 002657 174 PAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSK 216 (896)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~ 216 (896)
.-.++.|.|.+|+|||+||.++..... ..-...+|++...
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~---~~ge~~lyis~ee 61 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGL---QMGEPGVYVALEE 61 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH---hcCCcEEEEEeeC
Confidence 568999999999999999999766531 2345678887765
No 336
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.21 E-value=0.77 Score=49.85 Aligned_cols=152 Identities=18% Similarity=0.227 Sum_probs=79.3
Q ss_pred CeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHh
Q 002657 175 AGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDLRLENIQEIIGGKIGLMNESWKSKSLQEKSLDIFKIL 254 (896)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 254 (896)
-|--.++|++|.|||+++.++++.+ .|+.. =+..+...+-.+ |++.|
T Consensus 235 KRGYLLYGPPGTGKSS~IaAmAn~L-----~ydIy-dLeLt~v~~n~d---------------------------Lr~LL 281 (457)
T KOG0743|consen 235 KRGYLLYGPPGTGKSSFIAAMANYL-----NYDIY-DLELTEVKLDSD---------------------------LRHLL 281 (457)
T ss_pred hccceeeCCCCCCHHHHHHHHHhhc-----CCceE-EeeeccccCcHH---------------------------HHHHH
Confidence 3567899999999999999999987 34421 111211111111 22222
Q ss_pred --CCceEEEEEecCCCccc-----------cc---------cccccCC--CCCCCCcEEE-EecCCHHHH--hhh---cc
Q 002657 255 --GEKKFVLLLDDLWQRVD-----------LT---------KVGVPLP--SPQSSASKVV-FTTRSEEIC--GLM---EA 304 (896)
Q Consensus 255 --~~kr~LlVlDdv~~~~~-----------~~---------~l~~~~~--~~~~~~s~ii-vTtR~~~v~--~~~---~~ 304 (896)
...+-+||+.|++-..+ .. -+...+. ...+.+=||| +||...+-. ..+ ..
T Consensus 282 ~~t~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRm 361 (457)
T KOG0743|consen 282 LATPNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRM 361 (457)
T ss_pred HhCCCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcc
Confidence 13456777888752110 11 0111110 0111133555 566655431 112 22
Q ss_pred CcceeccCCChHhHHHHHHHHhcCcccCCCCChHHHHHHHHHHhCCCchHHHHHHH-hhcCC
Q 002657 305 QKKFKVACLSDKDAWELFCHKVGEETLNNHPDIPELAQTVAKECGGMPLALITIGR-AMSCK 365 (896)
Q Consensus 305 ~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~~~-~l~~~ 365 (896)
+-.+.|..-+.+....|+....+.+. .+ .+..+|.+...|.-+.=..++. +|..+
T Consensus 362 DmhI~mgyCtf~~fK~La~nYL~~~~--~h----~L~~eie~l~~~~~~tPA~V~e~lm~~~ 417 (457)
T KOG0743|consen 362 DMHIYMGYCTFEAFKTLASNYLGIEE--DH----RLFDEIERLIEETEVTPAQVAEELMKNK 417 (457)
T ss_pred eeEEEcCCCCHHHHHHHHHHhcCCCC--Cc----chhHHHHHHhhcCccCHHHHHHHHhhcc
Confidence 34578888888888889988876542 12 3355555555555444444444 44443
No 337
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=95.20 E-value=0.099 Score=52.07 Aligned_cols=93 Identities=24% Similarity=0.364 Sum_probs=57.1
Q ss_pred HHHHhcc-CCCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCc-cCHHHHHHHHHHhcCCCC-----ccc
Q 002657 166 VWRCLVE-EPAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKD-LRLENIQEIIGGKIGLMN-----ESW 238 (896)
Q Consensus 166 l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~-----~~~ 238 (896)
.++.+.. ..-.-++|.|.+|+|||+|+.++.+.. .-+.++++.+.+. ....++.+++...-.... ..
T Consensus 5 ~ID~l~Pig~Gqr~~I~g~~g~GKt~Ll~~i~~~~-----~~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t- 78 (215)
T PF00006_consen 5 AIDLLFPIGRGQRIGIFGGAGVGKTVLLQEIANNQ-----DADVVVYALIGERGREVTEFIEELKGEGALERTVVVAAT- 78 (215)
T ss_dssp HHHHHSCEETTSEEEEEESTTSSHHHHHHHHHHHC-----TTTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEE-
T ss_pred eeccccccccCCEEEEEcCcccccchhhHHHHhcc-----cccceeeeeccccchhHHHHHHHHhhccccccccccccc-
Confidence 3444443 344678999999999999999999876 2345578888754 456666666644311100 00
Q ss_pred cccCH-H---------HHHHHHHHHhCCceEEEEEecC
Q 002657 239 KSKSL-Q---------EKSLDIFKILGEKKFVLLLDDL 266 (896)
Q Consensus 239 ~~~~~-~---------~~~~~l~~~l~~kr~LlVlDdv 266 (896)
..... . ..++.++. +++.+|+++||+
T Consensus 79 ~~~~~~~r~~~~~~a~t~AEyfrd--~G~dVlli~Dsl 114 (215)
T PF00006_consen 79 SDEPPAARYRAPYTALTIAEYFRD--QGKDVLLIIDSL 114 (215)
T ss_dssp TTS-HHHHHHHHHHHHHHHHHHHH--TTSEEEEEEETH
T ss_pred chhhHHHHhhhhccchhhhHHHhh--cCCceeehhhhh
Confidence 01111 1 11222333 689999999998
No 338
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.20 E-value=0.12 Score=55.17 Aligned_cols=94 Identities=22% Similarity=0.383 Sum_probs=57.6
Q ss_pred HHHHHHhccC--CCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHhcCCCCccc---
Q 002657 164 EQVWRCLVEE--PAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDLRLENIQEIIGGKIGLMNESW--- 238 (896)
Q Consensus 164 ~~l~~~L~~~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~--- 238 (896)
.++-..|..+ .-.+|.|=|-+|||||||..+++.+... .. .+.||+-- .+..++ +--++.++.+.+..
T Consensus 80 ~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~--~~--~vLYVsGE--ES~~Qi-klRA~RL~~~~~~l~l~ 152 (456)
T COG1066 80 EELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAK--RG--KVLYVSGE--ESLQQI-KLRADRLGLPTNNLYLL 152 (456)
T ss_pred HHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHHh--cC--cEEEEeCC--cCHHHH-HHHHHHhCCCccceEEe
Confidence 3444444443 4578999999999999999999998831 22 66666543 344443 34456666544322
Q ss_pred cccCHHHHHHHHHHHhCCceEEEEEecCC
Q 002657 239 KSKSLQEKSLDIFKILGEKKFVLLLDDLW 267 (896)
Q Consensus 239 ~~~~~~~~~~~l~~~l~~kr~LlVlDdv~ 267 (896)
...+.+.....+. +.++-++|+|-+.
T Consensus 153 aEt~~e~I~~~l~---~~~p~lvVIDSIQ 178 (456)
T COG1066 153 AETNLEDIIAELE---QEKPDLVVIDSIQ 178 (456)
T ss_pred hhcCHHHHHHHHH---hcCCCEEEEeccc
Confidence 1223333333333 3688899999984
No 339
>PRK12678 transcription termination factor Rho; Provisional
Probab=95.19 E-value=0.034 Score=62.03 Aligned_cols=99 Identities=22% Similarity=0.302 Sum_probs=53.9
Q ss_pred HHHHHhcc-CCCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEE-EeCCcc-CHHHHHHHHHHhcCCCCcccccc
Q 002657 165 QVWRCLVE-EPAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWV-VVSKDL-RLENIQEIIGGKIGLMNESWKSK 241 (896)
Q Consensus 165 ~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv-~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~ 241 (896)
++++++.. ..-.-..|+|++|+|||||++.+++... ..+-++.++| -|.+.. .+.++.+.+-..+-.. .++..
T Consensus 405 RvIDll~PIGkGQR~LIvgpp~aGKTtLL~~IAn~i~--~n~~~~~~ivvLIgERpeEVtdm~rsVkgeVVas--T~D~p 480 (672)
T PRK12678 405 RVIDLIMPIGKGQRGLIVSPPKAGKTTILQNIANAIT--TNNPECHLMVVLVDERPEEVTDMQRSVKGEVIAS--TFDRP 480 (672)
T ss_pred eeeeeecccccCCEeEEeCCCCCCHHHHHHHHHHHHh--hcCCCeEEEEEEEeCchhhHHHHHHhccceEEEE--CCCCC
Confidence 34555443 4556789999999999999999998752 2344554443 343322 2333333331111111 01111
Q ss_pred C-----HHHHHHHHHHHh--CCceEEEEEecCC
Q 002657 242 S-----LQEKSLDIFKIL--GEKKFVLLLDDLW 267 (896)
Q Consensus 242 ~-----~~~~~~~l~~~l--~~kr~LlVlDdv~ 267 (896)
. .....-.+.+++ .++.+||++|++-
T Consensus 481 ~~~~~~~a~~ai~~Ae~fre~G~dVlillDSlT 513 (672)
T PRK12678 481 PSDHTTVAELAIERAKRLVELGKDVVVLLDSIT 513 (672)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCch
Confidence 1 112222344444 6899999999983
No 340
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=95.18 E-value=0.24 Score=57.01 Aligned_cols=133 Identities=17% Similarity=0.163 Sum_probs=77.8
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHH
Q 002657 174 PAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDLRLENIQEIIGGKIGLMNESWKSKSLQEKSLDIFKI 253 (896)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 253 (896)
..+.+.++|++|.|||.||+++++.. ...|-.+ ... .+ .. .+-..........+...
T Consensus 275 ~~~giLl~GpPGtGKT~lAkava~~~---~~~fi~v-----~~~----~l----~s-------k~vGesek~ir~~F~~A 331 (494)
T COG0464 275 PPKGVLLYGPPGTGKTLLAKAVALES---RSRFISV-----KGS----EL----LS-------KWVGESEKNIRELFEKA 331 (494)
T ss_pred CCCeeEEECCCCCCHHHHHHHHHhhC---CCeEEEe-----eCH----HH----hc-------cccchHHHHHHHHHHHH
Confidence 45688999999999999999999965 3344322 211 11 10 11223344444455555
Q ss_pred hCCceEEEEEecCCCcccc-------------ccccccCCC-CCCCCcEEEEecCCHHHHh---hh--ccCcceeccCCC
Q 002657 254 LGEKKFVLLLDDLWQRVDL-------------TKVGVPLPS-PQSSASKVVFTTRSEEICG---LM--EAQKKFKVACLS 314 (896)
Q Consensus 254 l~~kr~LlVlDdv~~~~~~-------------~~l~~~~~~-~~~~~s~iivTtR~~~v~~---~~--~~~~~~~l~~L~ 314 (896)
.+..+.+|.+|+++....+ .++...+.. ....+..||-||-...... .. .-...+.+.+-+
T Consensus 332 ~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd 411 (494)
T COG0464 332 RKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPD 411 (494)
T ss_pred HcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCC
Confidence 5688999999999532111 112222210 1223334555555443321 11 224578889999
Q ss_pred hHhHHHHHHHHhcCc
Q 002657 315 DKDAWELFCHKVGEE 329 (896)
Q Consensus 315 ~~e~~~Lf~~~~~~~ 329 (896)
.++..+.|..+....
T Consensus 412 ~~~r~~i~~~~~~~~ 426 (494)
T COG0464 412 LEERLEIFKIHLRDK 426 (494)
T ss_pred HHHHHHHHHHHhccc
Confidence 999999999988643
No 341
>PTZ00035 Rad51 protein; Provisional
Probab=95.18 E-value=0.19 Score=54.16 Aligned_cols=92 Identities=21% Similarity=0.220 Sum_probs=54.8
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHhhhccC----CCCCCeEEEEEeCCccCHHHHHHHHHHhcCCCCcc-------ccccC
Q 002657 174 PAGIVGLYGMGGVGKTTLLTHINNKFLQV----PNDFDCVIWVVVSKDLRLENIQEIIGGKIGLMNES-------WKSKS 242 (896)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-------~~~~~ 242 (896)
...++.|+|.+|+|||||+..++-.. .. ...-..++|++....++...+ .++++.++..... ....+
T Consensus 117 ~G~iteI~G~~GsGKT~l~~~l~~~~-qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g~~~~~~l~nI~~~~~~~ 194 (337)
T PTZ00035 117 TGSITELFGEFRTGKTQLCHTLCVTC-QLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFGLDPEDVLDNIAYARAYN 194 (337)
T ss_pred CCeEEEEECCCCCchhHHHHHHHHHh-ccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhCCChHhHhhceEEEccCC
Confidence 56789999999999999999987544 21 112245779998877777664 4455555543211 01122
Q ss_pred HHHHHHH---HHHHhC-CceEEEEEecCC
Q 002657 243 LQEKSLD---IFKILG-EKKFVLLLDDLW 267 (896)
Q Consensus 243 ~~~~~~~---l~~~l~-~kr~LlVlDdv~ 267 (896)
.++.... +...+. .+--|||+|-+.
T Consensus 195 ~e~~~~~l~~~~~~l~~~~~~lvVIDSit 223 (337)
T PTZ00035 195 HEHQMQLLSQAAAKMAEERFALLIVDSAT 223 (337)
T ss_pred HHHHHHHHHHHHHHhhccCccEEEEECcH
Confidence 2333322 223332 344588888873
No 342
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.18 E-value=0.026 Score=57.56 Aligned_cols=27 Identities=33% Similarity=0.528 Sum_probs=24.6
Q ss_pred CCCeEEEEEcCCCchHHHHHHHHHhhh
Q 002657 173 EPAGIVGLYGMGGVGKTTLLTHINNKF 199 (896)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (896)
+...+|+|.|+.|+|||||++.+....
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l 57 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALL 57 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999999876
No 343
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.17 E-value=0.016 Score=54.07 Aligned_cols=23 Identities=30% Similarity=0.557 Sum_probs=21.1
Q ss_pred EEEEEcCCCchHHHHHHHHHhhh
Q 002657 177 IVGLYGMGGVGKTTLLTHINNKF 199 (896)
Q Consensus 177 vi~I~G~gGiGKTtLa~~v~~~~ 199 (896)
||.+.|++|+||||+|+.+....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRL 23 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHS
T ss_pred CEEEECCCCCCHHHHHHHHHHHC
Confidence 68899999999999999999775
No 344
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.13 E-value=0.047 Score=54.66 Aligned_cols=26 Identities=38% Similarity=0.446 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHhhh
Q 002657 174 PAGIVGLYGMGGVGKTTLLTHINNKF 199 (896)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (896)
+-.+++|+|..|.|||||++.+....
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (207)
T PRK13539 27 AGEALVLTGPNGSGKTTLLRLIAGLL 52 (207)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 56799999999999999999998764
No 345
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=95.12 E-value=0.41 Score=57.72 Aligned_cols=182 Identities=19% Similarity=0.229 Sum_probs=89.3
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHhhhc--cC-----------CCCCCeEEEEEeCCccCHHHHHHHHHHhcCCCCccccc
Q 002657 174 PAGIVGLYGMGGVGKTTLLTHINNKFL--QV-----------PNDFDCVIWVVVSKDLRLENIQEIIGGKIGLMNESWKS 240 (896)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~--~~-----------~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~ 240 (896)
+.+++.|.|+.+.||||+.+.+.-... .. -..|+. ++..++...++..-..
T Consensus 326 ~~~~~iITGpN~gGKTt~lktigl~~~maq~G~~vpa~~~~~i~~~~~-i~~~ig~~~si~~~lS--------------- 389 (782)
T PRK00409 326 DKTVLVITGPNTGGKTVTLKTLGLAALMAKSGLPIPANEPSEIPVFKE-IFADIGDEQSIEQSLS--------------- 389 (782)
T ss_pred CceEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCccccccce-EEEecCCccchhhchh---------------
Confidence 467899999999999999998753310 00 011222 2333333222221111
Q ss_pred cCHHHHHHHHHHHhC--CceEEEEEecCCCccc---ccccccc-CCCCCCCCcEEEEecCCHHHHhhhccCcceeccCCC
Q 002657 241 KSLQEKSLDIFKILG--EKKFVLLLDDLWQRVD---LTKVGVP-LPSPQSSASKVVFTTRSEEICGLMEAQKKFKVACLS 314 (896)
Q Consensus 241 ~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~~---~~~l~~~-~~~~~~~~s~iivTtR~~~v~~~~~~~~~~~l~~L~ 314 (896)
....-...+...+. ..+-|+++|..-...+ -..+... +......|+.+|+||...++.........+.-..+.
T Consensus 390 -tfS~~m~~~~~Il~~~~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~el~~~~~~~~~v~~~~~~ 468 (782)
T PRK00409 390 -TFSGHMTNIVRILEKADKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKELKALMYNREGVENASVE 468 (782)
T ss_pred -HHHHHHHHHHHHHHhCCcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHHHHHHHhcCCCeEEEEEE
Confidence 11111122222222 4778999999964322 1222111 110123478999999998876554332211110000
Q ss_pred -hHhHHHHHHHHhcCcccCCCCChHHHHHHHHHHhCCCchHHHHHHHhhcCCCCHHHHHHHHHHHhc
Q 002657 315 -DKDAWELFCHKVGEETLNNHPDIPELAQTVAKECGGMPLALITIGRAMSCKRTPQEWRHAIQVLRT 380 (896)
Q Consensus 315 -~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~~~~l~~~~~~~~w~~~l~~l~~ 380 (896)
+.+......+...+. + -...|-.|++++ |+|-.|..-|..+.. ........++..+..
T Consensus 469 ~d~~~l~~~Ykl~~G~---~---g~S~a~~iA~~~-Glp~~ii~~A~~~~~-~~~~~~~~li~~l~~ 527 (782)
T PRK00409 469 FDEETLRPTYRLLIGI---P---GKSNAFEIAKRL-GLPENIIEEAKKLIG-EDKEKLNELIASLEE 527 (782)
T ss_pred EecCcCcEEEEEeeCC---C---CCcHHHHHHHHh-CcCHHHHHHHHHHHh-hhhhHHHHHHHHHHH
Confidence 111111001111100 1 134478888887 788888887776654 344456666655544
No 346
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.11 E-value=0.026 Score=53.69 Aligned_cols=117 Identities=24% Similarity=0.263 Sum_probs=61.1
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCcc--CHHHHHHHHHHhcCCCCccccccCHHHHHHHHH
Q 002657 174 PAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDL--RLENIQEIIGGKIGLMNESWKSKSLQEKSLDIF 251 (896)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 251 (896)
+-.+++|+|..|.|||||++.+.... ......+++...... .... ....++... +-..-+...-.+.
T Consensus 24 ~g~~~~i~G~nGsGKStll~~l~g~~----~~~~G~i~~~~~~~~~~~~~~----~~~~i~~~~---qlS~G~~~r~~l~ 92 (157)
T cd00267 24 AGEIVALVGPNGSGKSTLLRAIAGLL----KPTSGEILIDGKDIAKLPLEE----LRRRIGYVP---QLSGGQRQRVALA 92 (157)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC----CCCccEEEECCEEcccCCHHH----HHhceEEEe---eCCHHHHHHHHHH
Confidence 44799999999999999999998765 233444444321111 1111 111122110 0111122233355
Q ss_pred HHhCCceEEEEEecCCCccc---cccccccCCCCCCCCcEEEEecCCHHHHhh
Q 002657 252 KILGEKKFVLLLDDLWQRVD---LTKVGVPLPSPQSSASKVVFTTRSEEICGL 301 (896)
Q Consensus 252 ~~l~~kr~LlVlDdv~~~~~---~~~l~~~~~~~~~~~s~iivTtR~~~v~~~ 301 (896)
..+...+-++++|+.-..-+ ...+...+......+..++++|.+......
T Consensus 93 ~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~ 145 (157)
T cd00267 93 RALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAEL 145 (157)
T ss_pred HHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 55555677899999854322 222222221011225678888887765443
No 347
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=95.11 E-value=0.015 Score=51.62 Aligned_cols=28 Identities=39% Similarity=0.476 Sum_probs=19.6
Q ss_pred EEEEcCCCchHHHHHHHHHhhhccCCCCCCe
Q 002657 178 VGLYGMGGVGKTTLLTHINNKFLQVPNDFDC 208 (896)
Q Consensus 178 i~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~ 208 (896)
|.|+|.+|+||||+|+.++... ...|..
T Consensus 2 vLleg~PG~GKT~la~~lA~~~---~~~f~R 29 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSL---GLSFKR 29 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHT---T--EEE
T ss_pred EeeECCCccHHHHHHHHHHHHc---CCceeE
Confidence 6789999999999999999876 556654
No 348
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.09 E-value=0.17 Score=54.40 Aligned_cols=99 Identities=22% Similarity=0.270 Sum_probs=56.0
Q ss_pred HHHHHHHhccC----CCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCc-cCHHHHHHHHHHhcCCCCcc
Q 002657 163 LEQVWRCLVEE----PAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKD-LRLENIQEIIGGKIGLMNES 237 (896)
Q Consensus 163 ~~~l~~~L~~~----~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~ 237 (896)
...+..++.++ +-+||.++|+.|+||||-..+++..+ .....=..+..|+...- ....+-++..++-++.+..
T Consensus 187 l~~~~~~~~~~~~~~~~~vi~LVGPTGVGKTTTlAKLAar~-~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~- 264 (407)
T COG1419 187 LRKLLLSLIENLIVEQKRVIALVGPTGVGKTTTLAKLAARY-VMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLE- 264 (407)
T ss_pred HHHHHHhhccccccccCcEEEEECCCCCcHHHHHHHHHHHH-HhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceE-
Confidence 33444444443 47999999999999976555555544 22234456777776542 2345566677777776643
Q ss_pred ccccCHHHHHHHHHHHhCCceEEEEEecC
Q 002657 238 WKSKSLQEKSLDIFKILGEKKFVLLLDDL 266 (896)
Q Consensus 238 ~~~~~~~~~~~~l~~~l~~kr~LlVlDdv 266 (896)
...+..++...+.. +++.. +|.+|=+
T Consensus 265 -vv~~~~el~~ai~~-l~~~d-~ILVDTa 290 (407)
T COG1419 265 -VVYSPKELAEAIEA-LRDCD-VILVDTA 290 (407)
T ss_pred -EecCHHHHHHHHHH-hhcCC-EEEEeCC
Confidence 22344444444333 33333 4445555
No 349
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.08 E-value=0.074 Score=57.90 Aligned_cols=25 Identities=32% Similarity=0.486 Sum_probs=22.2
Q ss_pred CeEEEEEcCCCchHHHHHHHHHhhh
Q 002657 175 AGIVGLYGMGGVGKTTLLTHINNKF 199 (896)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (896)
..++.++|++|+||||++.+++...
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998754
No 350
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.08 E-value=0.027 Score=54.84 Aligned_cols=26 Identities=42% Similarity=0.520 Sum_probs=23.1
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHhhh
Q 002657 174 PAGIVGLYGMGGVGKTTLLTHINNKF 199 (896)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (896)
.-.+++|+|..|.|||||++.++...
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 25 AGEIVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45799999999999999999998754
No 351
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.06 E-value=0.11 Score=56.65 Aligned_cols=90 Identities=16% Similarity=0.191 Sum_probs=53.5
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHhhhccCC-CCCCeEEEEEeCCc-cCHHHHHHHHHHhcCCCCccccccCHHHHHHHHH
Q 002657 174 PAGIVGLYGMGGVGKTTLLTHINNKFLQVP-NDFDCVIWVVVSKD-LRLENIQEIIGGKIGLMNESWKSKSLQEKSLDIF 251 (896)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 251 (896)
..++|.++|+.|+||||.+..++..+.... ..-..+..+++... ......++..++.++.+.. ...........+.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~--~~~~~~~l~~~L~ 250 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVK--AIESFKDLKEEIT 250 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceE--eeCcHHHHHHHHH
Confidence 357999999999999999999988762111 12234555655432 1233346666777766432 2233444444444
Q ss_pred HHhCCceEEEEEecCC
Q 002657 252 KILGEKKFVLLLDDLW 267 (896)
Q Consensus 252 ~~l~~kr~LlVlDdv~ 267 (896)
+. .+.-++++|.+.
T Consensus 251 ~~--~~~DlVLIDTaG 264 (388)
T PRK12723 251 QS--KDFDLVLVDTIG 264 (388)
T ss_pred Hh--CCCCEEEEcCCC
Confidence 33 344578888883
No 352
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=95.04 E-value=0.04 Score=49.99 Aligned_cols=38 Identities=24% Similarity=0.336 Sum_probs=28.7
Q ss_pred HHHHHHHHhcc--CCCeEEEEEcCCCchHHHHHHHHHhhh
Q 002657 162 QLEQVWRCLVE--EPAGIVGLYGMGGVGKTTLLTHINNKF 199 (896)
Q Consensus 162 ~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (896)
+.+++-+.|.. ....+|.+.|.-|+||||+++.+++..
T Consensus 7 ~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 7 AMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred HHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 34444444433 345689999999999999999999986
No 353
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.04 E-value=0.033 Score=53.77 Aligned_cols=23 Identities=30% Similarity=0.496 Sum_probs=21.2
Q ss_pred EEEEEcCCCchHHHHHHHHHhhh
Q 002657 177 IVGLYGMGGVGKTTLLTHINNKF 199 (896)
Q Consensus 177 vi~I~G~gGiGKTtLa~~v~~~~ 199 (896)
.|.|.|.+|+||||+|+.+.+..
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999986
No 354
>PTZ00301 uridine kinase; Provisional
Probab=95.03 E-value=0.02 Score=56.93 Aligned_cols=25 Identities=32% Similarity=0.658 Sum_probs=22.7
Q ss_pred CeEEEEEcCCCchHHHHHHHHHhhh
Q 002657 175 AGIVGLYGMGGVGKTTLLTHINNKF 199 (896)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (896)
..+|+|.|.+|+||||||+.+.+..
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l 27 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSEL 27 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHH
Confidence 4689999999999999999998776
No 355
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.03 E-value=0.02 Score=57.51 Aligned_cols=27 Identities=33% Similarity=0.533 Sum_probs=24.2
Q ss_pred CCCeEEEEEcCCCchHHHHHHHHHhhh
Q 002657 173 EPAGIVGLYGMGGVGKTTLLTHINNKF 199 (896)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (896)
.+..+|+|.|.+|+|||||++.++...
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 356799999999999999999999876
No 356
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.02 E-value=0.041 Score=57.27 Aligned_cols=88 Identities=27% Similarity=0.366 Sum_probs=48.7
Q ss_pred HHHHHHhccCCCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHhcCCCCccccccCH
Q 002657 164 EQVWRCLVEEPAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDLRLENIQEIIGGKIGLMNESWKSKSL 243 (896)
Q Consensus 164 ~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~ 243 (896)
..+++.+...+ +-+.++|+.|+|||++++...... . ...| .+.-++.+...+...+++.+-..+.......
T Consensus 23 ~~ll~~l~~~~-~pvLl~G~~GtGKT~li~~~l~~l-~-~~~~-~~~~~~~s~~Tts~~~q~~ie~~l~k~~~~~----- 93 (272)
T PF12775_consen 23 SYLLDLLLSNG-RPVLLVGPSGTGKTSLIQNFLSSL-D-SDKY-LVITINFSAQTTSNQLQKIIESKLEKRRGRV----- 93 (272)
T ss_dssp HHHHHHHHHCT-EEEEEESSTTSSHHHHHHHHHHCS-T-TCCE-EEEEEES-TTHHHHHHHHCCCTTECECTTEE-----
T ss_pred HHHHHHHHHcC-CcEEEECCCCCchhHHHHhhhccC-C-cccc-ceeEeeccCCCCHHHHHHHHhhcEEcCCCCC-----
Confidence 45566555544 456799999999999999988765 1 1222 2344555554444444432222221110000
Q ss_pred HHHHHHHHHHhCCceEEEEEecCC
Q 002657 244 QEKSLDIFKILGEKKFVLLLDDLW 267 (896)
Q Consensus 244 ~~~~~~l~~~l~~kr~LlVlDdv~ 267 (896)
..--.+|+.++.+||+.
T Consensus 94 -------~gP~~~k~lv~fiDDlN 110 (272)
T PF12775_consen 94 -------YGPPGGKKLVLFIDDLN 110 (272)
T ss_dssp -------EEEESSSEEEEEEETTT
T ss_pred -------CCCCCCcEEEEEecccC
Confidence 00013688899999983
No 357
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=95.00 E-value=0.16 Score=53.14 Aligned_cols=27 Identities=22% Similarity=0.259 Sum_probs=23.1
Q ss_pred CCCeEEEEEcCCCchHHHHHHHHHhhh
Q 002657 173 EPAGIVGLYGMGGVGKTTLLTHINNKF 199 (896)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (896)
....+|+|.|..|+||||+|+.+..-.
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll 86 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALL 86 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 356799999999999999998876655
No 358
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.97 E-value=0.14 Score=54.90 Aligned_cols=89 Identities=18% Similarity=0.081 Sum_probs=54.4
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCcc-CHHHHHHHHHHhcCCCCccccccCHHHHHHHHHH
Q 002657 174 PAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDL-RLENIQEIIGGKIGLMNESWKSKSLQEKSLDIFK 252 (896)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 252 (896)
+.+++.++|+.|+||||++..++... ..+ -..+.+|+..... ...+-++..++.++.+.. ...+..++...+..
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l-~~~--g~~V~lItaDtyR~gAveQLk~yae~lgvpv~--~~~dp~dL~~al~~ 279 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQL-LKQ--NRTVGFITTDTFRSGAVEQFQGYADKLDVELI--VATSPAELEEAVQY 279 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-HHc--CCeEEEEeCCccCccHHHHHHHHhhcCCCCEE--ecCCHHHHHHHHHH
Confidence 46799999999999999999998766 212 2346666654322 234556667776665432 22345555444443
Q ss_pred HhC-CceEEEEEecCC
Q 002657 253 ILG-EKKFVLLLDDLW 267 (896)
Q Consensus 253 ~l~-~kr~LlVlDdv~ 267 (896)
.-. +..=+|++|-.-
T Consensus 280 l~~~~~~D~VLIDTAG 295 (407)
T PRK12726 280 MTYVNCVDHILIDTVG 295 (407)
T ss_pred HHhcCCCCEEEEECCC
Confidence 321 334567778773
No 359
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=94.95 E-value=0.13 Score=55.05 Aligned_cols=22 Identities=27% Similarity=0.460 Sum_probs=20.3
Q ss_pred EEEEcCCCchHHHHHHHHHhhh
Q 002657 178 VGLYGMGGVGKTTLLTHINNKF 199 (896)
Q Consensus 178 i~I~G~gGiGKTtLa~~v~~~~ 199 (896)
+++.|++|+||||+++.+.+..
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l 23 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATL 23 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHH
Confidence 5789999999999999999876
No 360
>PRK03839 putative kinase; Provisional
Probab=94.93 E-value=0.02 Score=55.93 Aligned_cols=23 Identities=39% Similarity=0.641 Sum_probs=21.4
Q ss_pred EEEEEcCCCchHHHHHHHHHhhh
Q 002657 177 IVGLYGMGGVGKTTLLTHINNKF 199 (896)
Q Consensus 177 vi~I~G~gGiGKTtLa~~v~~~~ 199 (896)
.|.|.|++|+||||+++.+++..
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~ 24 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999986
No 361
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=94.93 E-value=0.033 Score=55.45 Aligned_cols=44 Identities=27% Similarity=0.393 Sum_probs=25.8
Q ss_pred ccCCCCCCccEEeccccccc--ccc--hhhhccCCCCcEEEccCCcccc
Q 002657 530 SEIPKCPHLLTLFLNSNELK--IIT--NDFFQFMPSLKVLSLSRNRRLT 574 (896)
Q Consensus 530 ~~~~~~~~L~~L~l~~n~l~--~i~--~~~~~~l~~L~~L~Ls~~~~i~ 574 (896)
+.+.+||+|+..+|+.|.+. ..+ .+++++-+.|..|.|++| .+.
T Consensus 86 ~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~Nn-GlG 133 (388)
T COG5238 86 KALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNN-GLG 133 (388)
T ss_pred HHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecC-CCC
Confidence 34566777777777777332 111 234566667777777776 443
No 362
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=94.92 E-value=0.13 Score=48.95 Aligned_cols=119 Identities=19% Similarity=0.216 Sum_probs=62.5
Q ss_pred CeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEE--EEEeCCccCHHHHHHHHHHhcCCCCc--cccccC-------H
Q 002657 175 AGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVI--WVVVSKDLRLENIQEIIGGKIGLMNE--SWKSKS-------L 243 (896)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~--wv~~~~~~~~~~~~~~i~~~l~~~~~--~~~~~~-------~ 243 (896)
...|-|++..|.||||.|..++-+.. ...+.+.+ |+.-.........+..+.-.+..... .+...+ .
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra~--~~g~~v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~~ 82 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRAL--GHGKKVGVIQFIKGAWPNGERAAFEPHGVEFQVMGTGFTWETQNREADTAIA 82 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHHH--HCCCeEEEEEEecCCcccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHHH
Confidence 46788999999999999998877652 33333321 33332223333344332000000000 111111 1
Q ss_pred HHHHHHHHHHhCCce-EEEEEecCC-----CccccccccccCCCCCCCCcEEEEecCCH
Q 002657 244 QEKSLDIFKILGEKK-FVLLLDDLW-----QRVDLTKVGVPLPSPQSSASKVVFTTRSE 296 (896)
Q Consensus 244 ~~~~~~l~~~l~~kr-~LlVlDdv~-----~~~~~~~l~~~~~~~~~~~s~iivTtR~~ 296 (896)
.+.....++.+...+ =++|||.+- ...+.+.+...+. ....+..||+|-|+.
T Consensus 83 ~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~-~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 83 KAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQ-ERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHH-hCCCCCEEEEECCCC
Confidence 112233445554444 499999993 2333444444443 455677999999976
No 363
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.91 E-value=0.022 Score=57.00 Aligned_cols=26 Identities=35% Similarity=0.511 Sum_probs=23.7
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHhhh
Q 002657 174 PAGIVGLYGMGGVGKTTLLTHINNKF 199 (896)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (896)
...+|+|+|++|+|||||++.++...
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~l 30 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQL 30 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45799999999999999999999876
No 364
>PRK11823 DNA repair protein RadA; Provisional
Probab=94.89 E-value=0.083 Score=59.31 Aligned_cols=84 Identities=23% Similarity=0.344 Sum_probs=49.2
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHhcCCCCccc---cccCHHHHHHHH
Q 002657 174 PAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDLRLENIQEIIGGKIGLMNESW---KSKSLQEKSLDI 250 (896)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 250 (896)
.-.++.|.|.+|+|||||+.+++.... ..-..++|++... +..++... ++.++...+.. ...+.+++...+
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq~a~~~a---~~g~~vlYvs~Ee--s~~qi~~r-a~rlg~~~~~l~~~~e~~l~~i~~~i 152 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQVAARLA---AAGGKVLYVSGEE--SASQIKLR-AERLGLPSDNLYLLAETNLEAILATI 152 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH---hcCCeEEEEEccc--cHHHHHHH-HHHcCCChhcEEEeCCCCHHHHHHHH
Confidence 467999999999999999999988762 2224577877644 33444322 45555422111 112233333322
Q ss_pred HHHhCCceEEEEEecC
Q 002657 251 FKILGEKKFVLLLDDL 266 (896)
Q Consensus 251 ~~~l~~kr~LlVlDdv 266 (896)
. +.+.-++|+|.+
T Consensus 153 ~---~~~~~lVVIDSI 165 (446)
T PRK11823 153 E---EEKPDLVVIDSI 165 (446)
T ss_pred H---hhCCCEEEEech
Confidence 2 234557888887
No 365
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=94.88 E-value=0.11 Score=52.24 Aligned_cols=23 Identities=30% Similarity=0.469 Sum_probs=21.4
Q ss_pred EEEEEcCCCchHHHHHHHHHhhh
Q 002657 177 IVGLYGMGGVGKTTLLTHINNKF 199 (896)
Q Consensus 177 vi~I~G~gGiGKTtLa~~v~~~~ 199 (896)
+|+|.|.+|+||||+|+.+....
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l 23 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALL 23 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999876
No 366
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=94.88 E-value=0.14 Score=51.92 Aligned_cols=49 Identities=20% Similarity=0.304 Sum_probs=33.1
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHH
Q 002657 174 PAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDLRLENIQEII 227 (896)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 227 (896)
...++.|.|.+|+||||+|.++..... +.. ..+++++. ..+..++.+.+
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~--~~g-~~~~yi~~--e~~~~~~~~~~ 71 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFL--QNG-YSVSYVST--QLTTTEFIKQM 71 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH--hCC-CcEEEEeC--CCCHHHHHHHH
Confidence 456999999999999999877665541 122 34566663 33556666665
No 367
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=94.86 E-value=0.11 Score=51.38 Aligned_cols=42 Identities=21% Similarity=0.361 Sum_probs=29.5
Q ss_pred CeEEEEEcCCCchHHHHHHHHHhhhccCCCCC--------CeEEEEEeCCc
Q 002657 175 AGIVGLYGMGGVGKTTLLTHINNKFLQVPNDF--------DCVIWVVVSKD 217 (896)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f--------~~~~wv~~~~~ 217 (896)
-.++.|.|++|+||||++.++...... ...| ..++|+.....
T Consensus 32 g~l~~i~g~~g~GKT~~~~~l~~~~~~-g~~~~g~~~~~~~~Vl~i~~E~~ 81 (193)
T PF13481_consen 32 GELTLIAGPPGSGKTTLALQLAAALAT-GRPFLGELPPRPGRVLYISLEDS 81 (193)
T ss_dssp TSEEEEEECSTSSHHHHHHHHHHHHHT----TT---------EEEEESSS-
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHh-CCccCCcccccCceEEEEeccCC
Confidence 458899999999999999999888732 2222 36788877665
No 368
>PTZ00088 adenylate kinase 1; Provisional
Probab=94.86 E-value=0.026 Score=56.98 Aligned_cols=22 Identities=36% Similarity=0.557 Sum_probs=20.7
Q ss_pred EEEEcCCCchHHHHHHHHHhhh
Q 002657 178 VGLYGMGGVGKTTLLTHINNKF 199 (896)
Q Consensus 178 i~I~G~gGiGKTtLa~~v~~~~ 199 (896)
|.|.|++|+||||+|+.+++.+
T Consensus 9 Ivl~G~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSKKE 30 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8899999999999999999876
No 369
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.82 E-value=0.0033 Score=59.79 Aligned_cols=64 Identities=25% Similarity=0.475 Sum_probs=32.0
Q ss_pred CCCccEEEeccCCCCCCC--cccc-CCCCCCEEeEecCcccchhcccCcccCCCCCcCccccEeeccCCCccc
Q 002657 751 FRSLCKVEIARCQKLKDL--TFLV-FAPNLESIEVKSCLALEEIVSDVPEAMGNLNLFAKLQYLELLGLPNLK 820 (896)
Q Consensus 751 ~~~L~~L~L~~c~~l~~l--~~l~-~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 820 (896)
++.++.|.+.+|..+.+. ..++ ..++|+.|+|++|+.|++-. ...+..|++|+.|.|.+++...
T Consensus 124 l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~G------L~~L~~lknLr~L~l~~l~~v~ 190 (221)
T KOG3864|consen 124 LRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGG------LACLLKLKNLRRLHLYDLPYVA 190 (221)
T ss_pred cchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhH------HHHHHHhhhhHHHHhcCchhhh
Confidence 444444555555444431 1122 23566666666666555531 1344556666666666655443
No 370
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=94.82 E-value=0.037 Score=60.23 Aligned_cols=26 Identities=27% Similarity=0.474 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHhhh
Q 002657 174 PAGIVGLYGMGGVGKTTLLTHINNKF 199 (896)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (896)
.-.+++|+|++|.||||||+.+..-+
T Consensus 361 ~G~~lgIIGPSgSGKSTLaR~lvG~w 386 (580)
T COG4618 361 AGEALGIIGPSGSGKSTLARLLVGIW 386 (580)
T ss_pred CCceEEEECCCCccHHHHHHHHHccc
Confidence 45689999999999999999986654
No 371
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=94.81 E-value=0.024 Score=55.85 Aligned_cols=26 Identities=31% Similarity=0.374 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHhhh
Q 002657 174 PAGIVGLYGMGGVGKTTLLTHINNKF 199 (896)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (896)
+.++|.|+|++|+||||+|+.++...
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998765
No 372
>PF12061 DUF3542: Protein of unknown function (DUF3542); InterPro: IPR021929 R1 is a gene for resistance to late blight, the most destructive disease in potato cultivation worldwide. The R1 gene belongs to the class of plant genes for pathogen resistance that have a leucine zipper motif, a putative nucleotide binding domain and a leucine-rich repeat domain []. Most proteins matching this entry are found associated with PF00931 from PFAM.
Probab=94.81 E-value=0.036 Score=56.02 Aligned_cols=75 Identities=13% Similarity=0.152 Sum_probs=63.1
Q ss_pred hhhHHHHHHHhhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHH
Q 002657 11 CDAILSHCLNCTLSKAACISQLEDNLVDLQAKLEKLIEAKNDVMMRVVIAERQQMRCLNQVQGWFSRVQSVETEAGQLIR 90 (896)
Q Consensus 11 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~a~~~~~~~~~~~~~Wl~~v~~~~~d~ed~ld 90 (896)
++-+++.|-.+..+....+.-++.+++-++.|++.++.||.++ +++...+. +..+..+.++...||++|.++|
T Consensus 298 VdFlL~NLkdfq~rysdSlaflKnQiqvIQ~elesLqpFLk~V------~ee~~nkh-~~~ed~a~~ii~kAyevEYVVD 370 (402)
T PF12061_consen 298 VDFLLKNLKDFQGRYSDSLAFLKNQIQVIQTELESLQPFLKHV------VEEPHNKH-DTNEDCATQIIRKAYEVEYVVD 370 (402)
T ss_pred HHHHHhhHHHHhccccchHHHHHHHHHHHHHHHHHhhHHHHHH------Hhccchhh-hhhhhHHHHHHHHHhheeeeee
Confidence 5677888888887888888999999999999999999999997 55544444 3388999999999999999998
Q ss_pred hh
Q 002657 91 DG 92 (896)
Q Consensus 91 ~~ 92 (896)
-.
T Consensus 371 aC 372 (402)
T PF12061_consen 371 AC 372 (402)
T ss_pred hh
Confidence 75
No 373
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=94.79 E-value=0.045 Score=49.36 Aligned_cols=70 Identities=16% Similarity=0.139 Sum_probs=42.7
Q ss_pred CeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHh
Q 002657 175 AGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDLRLENIQEIIGGKIGLMNESWKSKSLQEKSLDIFKIL 254 (896)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 254 (896)
.+-|.|.|.+|+||||++..++... . .-|+++++-..-..+....-+.... .-.+++.+.+.|...+
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~-----~---~~~i~isd~vkEn~l~~gyDE~y~c-----~i~DEdkv~D~Le~~m 73 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKT-----G---LEYIEISDLVKENNLYEGYDEEYKC-----HILDEDKVLDELEPLM 73 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHh-----C---CceEehhhHHhhhcchhcccccccC-----ccccHHHHHHHHHHHH
Confidence 3568899999999999999999654 2 2467776543333333322222211 2245566666666666
Q ss_pred CCc
Q 002657 255 GEK 257 (896)
Q Consensus 255 ~~k 257 (896)
.+.
T Consensus 74 ~~G 76 (176)
T KOG3347|consen 74 IEG 76 (176)
T ss_pred hcC
Confidence 543
No 374
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=94.79 E-value=0.09 Score=51.65 Aligned_cols=45 Identities=24% Similarity=0.166 Sum_probs=31.2
Q ss_pred EEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHH
Q 002657 177 IVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDLRLENIQEI 226 (896)
Q Consensus 177 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 226 (896)
++.|.|++|+|||+||.++..... ..-..++|++... +..++.+.
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~---~~g~~v~~~s~e~--~~~~~~~~ 45 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGL---ARGEPGLYVTLEE--SPEELIEN 45 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH---HCCCcEEEEECCC--CHHHHHHH
Confidence 367899999999999999877652 2224577887654 34444443
No 375
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=94.79 E-value=0.02 Score=50.36 Aligned_cols=22 Identities=32% Similarity=0.680 Sum_probs=19.9
Q ss_pred EEEEcCCCchHHHHHHHHHhhh
Q 002657 178 VGLYGMGGVGKTTLLTHINNKF 199 (896)
Q Consensus 178 i~I~G~gGiGKTtLa~~v~~~~ 199 (896)
|.|+|.+|+|||++|+.++.+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l 22 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDL 22 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999988876
No 376
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=94.78 E-value=0.076 Score=58.22 Aligned_cols=89 Identities=24% Similarity=0.306 Sum_probs=53.2
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCcc-CHHHHHHHHHHhcCCCCc-----cccccCHH---
Q 002657 174 PAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDL-RLENIQEIIGGKIGLMNE-----SWKSKSLQ--- 244 (896)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~-----~~~~~~~~--- 244 (896)
.-..++|+|..|+|||||++.+++.. ..+.++.+-+.+.. ...++...++..-+.... +.+.....
T Consensus 161 ~GqrigI~G~sG~GKSTLL~~I~~~~-----~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~ 235 (444)
T PRK08972 161 KGQRMGLFAGSGVGKSVLLGMMTRGT-----TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLK 235 (444)
T ss_pred CCCEEEEECCCCCChhHHHHHhccCC-----CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHH
Confidence 55789999999999999999998653 23566666665543 345566665443221110 00111111
Q ss_pred --HHHHHHHHHh--CCceEEEEEecCC
Q 002657 245 --EKSLDIFKIL--GEKKFVLLLDDLW 267 (896)
Q Consensus 245 --~~~~~l~~~l--~~kr~LlVlDdv~ 267 (896)
..+..+.+++ +++.+|+++||+-
T Consensus 236 a~~~A~tiAEyfrd~G~~VLl~~DslT 262 (444)
T PRK08972 236 GCETATTIAEYFRDQGLNVLLLMDSLT 262 (444)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEcChH
Confidence 1122244444 6899999999983
No 377
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.73 E-value=0.024 Score=54.08 Aligned_cols=24 Identities=29% Similarity=0.486 Sum_probs=21.5
Q ss_pred eEEEEEcCCCchHHHHHHHHHhhh
Q 002657 176 GIVGLYGMGGVGKTTLLTHINNKF 199 (896)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~v~~~~ 199 (896)
+.|-+.|.+|+||||+|+++++..
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L 25 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKEL 25 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHH
Confidence 457789999999999999999887
No 378
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=94.72 E-value=0.42 Score=47.09 Aligned_cols=43 Identities=33% Similarity=0.425 Sum_probs=32.4
Q ss_pred cchHHHHHHHHHHhc-------------cCCCeEEEEEcCCCchHHHHHHHHHhhh
Q 002657 157 VGLQSQLEQVWRCLV-------------EEPAGIVGLYGMGGVGKTTLLTHINNKF 199 (896)
Q Consensus 157 vGr~~~~~~l~~~L~-------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (896)
=|.+-.+.++.+... -+..+-|..+|++|+|||-||++|+++-
T Consensus 158 ggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t 213 (408)
T KOG0727|consen 158 GGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHT 213 (408)
T ss_pred ccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhcc
Confidence 356655555555442 1467788899999999999999999985
No 379
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.71 E-value=1.5 Score=44.23 Aligned_cols=208 Identities=14% Similarity=0.156 Sum_probs=112.2
Q ss_pred ccchHHHHHHHHHHhccCCCeEEEEEcCCCchHHHHHHHHHhhhccC---CCCCCeEEEEEeCCc----------c----
Q 002657 156 VVGLQSQLEQVWRCLVEEPAGIVGLYGMGGVGKTTLLTHINNKFLQV---PNDFDCVIWVVVSKD----------L---- 218 (896)
Q Consensus 156 ~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~~~f~~~~wv~~~~~----------~---- 218 (896)
+.++++....+......++..-..++|++|.||-|.+..+.++.--+ +-.-+...|.+.+.. .
T Consensus 15 l~~~~e~~~~Lksl~~~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlEi 94 (351)
T KOG2035|consen 15 LIYHEELANLLKSLSSTGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLEI 94 (351)
T ss_pred cccHHHHHHHHHHhcccCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEEe
Confidence 56777777777777766778899999999999998887776654110 112334555544332 0
Q ss_pred -------CHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHhCCceE-EEEEecCCCc--cccccccccCCCCCCCCcE
Q 002657 219 -------RLENIQEIIGGKIGLMNESWKSKSLQEKSLDIFKILGEKKF-VLLLDDLWQR--VDLTKVGVPLPSPQSSASK 288 (896)
Q Consensus 219 -------~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~-LlVlDdv~~~--~~~~~l~~~~~~~~~~~s~ 288 (896)
.-+.+.++|+++..-..+ .+.-..++| ++|+-.++.. +....+..-.. .-.+.+|
T Consensus 95 tPSDaG~~DRvViQellKevAQt~q--------------ie~~~qr~fKvvvi~ead~LT~dAQ~aLRRTME-kYs~~~R 159 (351)
T KOG2035|consen 95 TPSDAGNYDRVVIQELLKEVAQTQQ--------------IETQGQRPFKVVVINEADELTRDAQHALRRTME-KYSSNCR 159 (351)
T ss_pred ChhhcCcccHHHHHHHHHHHHhhcc--------------hhhccccceEEEEEechHhhhHHHHHHHHHHHH-HHhcCce
Confidence 112233333333221110 000012344 4555555321 11111111111 1123455
Q ss_pred EEEecCC--HHHHhhhccCcceeccCCChHhHHHHHHHHhcCcccCCCCChHHHHHHHHHHhCCCc-hHHHHHHHhh-cC
Q 002657 289 VVFTTRS--EEICGLMEAQKKFKVACLSDKDAWELFCHKVGEETLNNHPDIPELAQTVAKECGGMP-LALITIGRAM-SC 364 (896)
Q Consensus 289 iivTtR~--~~v~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~GlP-lai~~~~~~l-~~ 364 (896)
+|+...+ +-+...-+..-.+++...+++|....+++........-+ .+++.+|+++++|+- -|+-++-..- .+
T Consensus 160 lIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp---~~~l~rIa~kS~~nLRrAllmlE~~~~~n 236 (351)
T KOG2035|consen 160 LILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLP---KELLKRIAEKSNRNLRRALLMLEAVRVNN 236 (351)
T ss_pred EEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCc---HHHHHHHHHHhcccHHHHHHHHHHHHhcc
Confidence 5543221 111222222346899999999999999998877664333 778999999999864 4443332211 11
Q ss_pred C--------CCHHHHHHHHHHHhcc
Q 002657 365 K--------RTPQEWRHAIQVLRTT 381 (896)
Q Consensus 365 ~--------~~~~~w~~~l~~l~~~ 381 (896)
. -..-+|+-+..++...
T Consensus 237 ~~~~a~~~~i~~~dWe~~i~e~a~~ 261 (351)
T KOG2035|consen 237 EPFTANSQVIPKPDWEIYIQEIARV 261 (351)
T ss_pred ccccccCCCCCCccHHHHHHHHHHH
Confidence 1 1345799887776554
No 380
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=94.71 E-value=0.079 Score=58.37 Aligned_cols=89 Identities=18% Similarity=0.221 Sum_probs=49.4
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHhc-----CCCCccccccCHH----
Q 002657 174 PAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDLRLENIQEIIGGKI-----GLMNESWKSKSLQ---- 244 (896)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l-----~~~~~~~~~~~~~---- 244 (896)
.-..++|+|..|+|||||++.+.... .....+++..-.+..++.++........ ..-.+. +.....
T Consensus 164 ~Gqri~I~G~SGsGKTTLL~~Ia~l~----~pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qs-d~~~~~r~~~ 238 (450)
T PRK06002 164 AGQRIGIFAGSGVGKSTLLAMLARAD----AFDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATS-DESPMMRRLA 238 (450)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC----CCCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcC-CCCHHHHHHH
Confidence 45689999999999999999887653 2223444443333445554444333322 110000 111111
Q ss_pred -HHHHHHHHHh--CCceEEEEEecCC
Q 002657 245 -EKSLDIFKIL--GEKKFVLLLDDLW 267 (896)
Q Consensus 245 -~~~~~l~~~l--~~kr~LlVlDdv~ 267 (896)
.....+.+++ +++.+|+++||+-
T Consensus 239 ~~~a~~iAEyfrd~G~~Vll~~DslT 264 (450)
T PRK06002 239 PLTATAIAEYFRDRGENVLLIVDSVT 264 (450)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccchH
Confidence 1122234444 5899999999983
No 381
>PRK00625 shikimate kinase; Provisional
Probab=94.69 E-value=0.024 Score=54.50 Aligned_cols=23 Identities=26% Similarity=0.325 Sum_probs=21.1
Q ss_pred EEEEEcCCCchHHHHHHHHHhhh
Q 002657 177 IVGLYGMGGVGKTTLLTHINNKF 199 (896)
Q Consensus 177 vi~I~G~gGiGKTtLa~~v~~~~ 199 (896)
.|.++||+|+||||+++.+.+..
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l 24 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFL 24 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999876
No 382
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=94.67 E-value=0.063 Score=53.40 Aligned_cols=25 Identities=32% Similarity=0.453 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHhh
Q 002657 174 PAGIVGLYGMGGVGKTTLLTHINNK 198 (896)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~ 198 (896)
.-.+++|+|..|.|||||++.+...
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 25 KGEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4579999999999999999999876
No 383
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.66 E-value=0.1 Score=58.09 Aligned_cols=87 Identities=22% Similarity=0.252 Sum_probs=49.2
Q ss_pred CeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCcc-CHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHH
Q 002657 175 AGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDL-RLENIQEIIGGKIGLMNESWKSKSLQEKSLDIFKI 253 (896)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 253 (896)
.+++.++|++|+||||++..++... .....-..+..|+..... ...+-++..++.++.+.. ...+..+....+.+
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~-~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~--~~~~~~~l~~~l~~- 296 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARY-ALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVE--VVYDPKELAKALEQ- 296 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH-HHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceE--ccCCHHhHHHHHHH-
Confidence 4699999999999999999988766 201223456666654321 122334444555554432 12233444444443
Q ss_pred hCCceEEEEEecC
Q 002657 254 LGEKKFVLLLDDL 266 (896)
Q Consensus 254 l~~kr~LlVlDdv 266 (896)
+.+ .=+|++|..
T Consensus 297 ~~~-~DlVlIDt~ 308 (424)
T PRK05703 297 LRD-CDVILIDTA 308 (424)
T ss_pred hCC-CCEEEEeCC
Confidence 332 457888876
No 384
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=94.65 E-value=0.086 Score=62.14 Aligned_cols=86 Identities=14% Similarity=0.150 Sum_probs=58.4
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHhcCCCCccc---cccCHHHHHHHH
Q 002657 174 PAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDLRLENIQEIIGGKIGLMNESW---KSKSLQEKSLDI 250 (896)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 250 (896)
.-+++-|.|.+|+|||||+.+++.... ..-..++|+.....++. ..+++++...+.. .....++....+
T Consensus 59 ~GsiteI~G~~GsGKTtLal~~~~~a~---~~G~~v~yId~E~t~~~-----~~A~~lGvDl~~llv~~~~~~E~~l~~i 130 (790)
T PRK09519 59 RGRVIEIYGPESSGKTTVALHAVANAQ---AAGGVAAFIDAEHALDP-----DYAKKLGVDTDSLLVSQPDTGEQALEIA 130 (790)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---HcCCcEEEECCccchhH-----HHHHHcCCChhHeEEecCCCHHHHHHHH
Confidence 568899999999999999988766542 22356799988777664 3677777654321 223444555555
Q ss_pred HHHhC-CceEEEEEecCC
Q 002657 251 FKILG-EKKFVLLLDDLW 267 (896)
Q Consensus 251 ~~~l~-~kr~LlVlDdv~ 267 (896)
...++ ++.-|||+|.+-
T Consensus 131 ~~lv~~~~~~LVVIDSI~ 148 (790)
T PRK09519 131 DMLIRSGALDIVVIDSVA 148 (790)
T ss_pred HHHhhcCCCeEEEEcchh
Confidence 55554 456789999984
No 385
>PRK04040 adenylate kinase; Provisional
Probab=94.62 E-value=0.028 Score=55.06 Aligned_cols=24 Identities=42% Similarity=0.592 Sum_probs=22.4
Q ss_pred eEEEEEcCCCchHHHHHHHHHhhh
Q 002657 176 GIVGLYGMGGVGKTTLLTHINNKF 199 (896)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~v~~~~ 199 (896)
.+|+|+|++|+||||+++.+.+..
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l 26 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKL 26 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHh
Confidence 589999999999999999999876
No 386
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.59 E-value=0.12 Score=52.00 Aligned_cols=26 Identities=31% Similarity=0.396 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHhhh
Q 002657 174 PAGIVGLYGMGGVGKTTLLTHINNKF 199 (896)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (896)
.-.+++|+|..|.|||||++.++...
T Consensus 36 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 61 (214)
T PRK13543 36 AGEALLVQGDNGAGKTTLLRVLAGLL 61 (214)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 55789999999999999999998764
No 387
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.58 E-value=0.11 Score=50.73 Aligned_cols=26 Identities=31% Similarity=0.415 Sum_probs=23.1
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHhhh
Q 002657 174 PAGIVGLYGMGGVGKTTLLTHINNKF 199 (896)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (896)
.-.+++|+|..|.|||||++.++...
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 25 AGEIVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999998765
No 388
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=94.56 E-value=0.24 Score=56.52 Aligned_cols=134 Identities=19% Similarity=0.216 Sum_probs=69.9
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHhhhccCCC-----CCCeEEEEEeCCcc-----C------------HHHHHHHHHHhc
Q 002657 174 PAGIVGLYGMGGVGKTTLLTHINNKFLQVPN-----DFDCVIWVVVSKDL-----R------------LENIQEIIGGKI 231 (896)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-----~f~~~~wv~~~~~~-----~------------~~~~~~~i~~~l 231 (896)
.-..|+|+|+.|+|||||.+.+........+ .--.+.|+.-.... + ...-.+..+..+
T Consensus 347 ~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f 426 (530)
T COG0488 347 RGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRF 426 (530)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHc
Confidence 4567999999999999999999665421111 11122333211100 0 133344444555
Q ss_pred CCCCccc----cccCHHHH-HHHHHHHhCCceEEEEEecCCCccccc---cccccCCCCCCCCcEEEEecCCHHHHhhhc
Q 002657 232 GLMNESW----KSKSLQEK-SLDIFKILGEKKFVLLLDDLWQRVDLT---KVGVPLPSPQSSASKVVFTTRSEEICGLME 303 (896)
Q Consensus 232 ~~~~~~~----~~~~~~~~-~~~l~~~l~~kr~LlVlDdv~~~~~~~---~l~~~~~~~~~~~s~iivTtR~~~v~~~~~ 303 (896)
+.+.+.. ...+-.+. .-.+...+-.++=+||||.--+.-+.+ .+..++. .-.| .||+.|.++.......
T Consensus 427 ~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~--~f~G-tvl~VSHDr~Fl~~va 503 (530)
T COG0488 427 GFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALL--DFEG-TVLLVSHDRYFLDRVA 503 (530)
T ss_pred CCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHH--hCCC-eEEEEeCCHHHHHhhc
Confidence 4433211 11222222 233455556788899999986543322 2233332 1223 4788888887665543
Q ss_pred cCcceecc
Q 002657 304 AQKKFKVA 311 (896)
Q Consensus 304 ~~~~~~l~ 311 (896)
..++.+.
T Consensus 504 -~~i~~~~ 510 (530)
T COG0488 504 -TRIWLVE 510 (530)
T ss_pred -ceEEEEc
Confidence 3344444
No 389
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=94.54 E-value=0.079 Score=57.44 Aligned_cols=44 Identities=20% Similarity=0.280 Sum_probs=35.7
Q ss_pred ccchHHHHHHHHHHhccC--------------CCeEEEEEcCCCchHHHHHHHHHhhh
Q 002657 156 VVGLQSQLEQVWRCLVEE--------------PAGIVGLYGMGGVGKTTLLTHINNKF 199 (896)
Q Consensus 156 ~vGr~~~~~~l~~~L~~~--------------~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (896)
++|.++.++.+.-.+... ..+.|.++|++|+|||++|+.++...
T Consensus 14 IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l 71 (441)
T TIGR00390 14 IIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLA 71 (441)
T ss_pred ccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 789988888876655421 23678899999999999999999876
No 390
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=94.54 E-value=0.089 Score=52.38 Aligned_cols=26 Identities=31% Similarity=0.367 Sum_probs=23.0
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHhhh
Q 002657 174 PAGIVGLYGMGGVGKTTLLTHINNKF 199 (896)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (896)
.-.+++|+|..|.|||||.+.+..-.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (201)
T cd03231 25 AGEALQVTGPNGSGKTTLLRILAGLS 50 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 55799999999999999999998764
No 391
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=94.54 E-value=0.068 Score=52.92 Aligned_cols=23 Identities=26% Similarity=0.276 Sum_probs=21.0
Q ss_pred eEEEEEcCCCchHHHHHHHHHhh
Q 002657 176 GIVGLYGMGGVGKTTLLTHINNK 198 (896)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~v~~~ 198 (896)
++++|+|+.|.|||||++.+...
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~ 48 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVN 48 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHH
Confidence 79999999999999999998754
No 392
>PF13245 AAA_19: Part of AAA domain
Probab=94.54 E-value=0.099 Score=42.40 Aligned_cols=26 Identities=27% Similarity=0.281 Sum_probs=19.0
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHhhh
Q 002657 174 PAGIVGLYGMGGVGKTTLLTHINNKF 199 (896)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (896)
+.+++.|.|++|.|||+++.+.....
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~l 34 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAEL 34 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 45678889999999995555544443
No 393
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=94.51 E-value=0.15 Score=57.31 Aligned_cols=94 Identities=20% Similarity=0.300 Sum_probs=51.4
Q ss_pred HHHHHHhcc--CCCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHhcCCCCccc---
Q 002657 164 EQVWRCLVE--EPAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDLRLENIQEIIGGKIGLMNESW--- 238 (896)
Q Consensus 164 ~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~--- 238 (896)
..+-+.|.. ..-.++.|.|.+|+|||||+.+++....+ .-..++|++... +..++.. -++.++...+..
T Consensus 81 ~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~---~g~kvlYvs~EE--s~~qi~~-ra~rlg~~~~~l~~~ 154 (454)
T TIGR00416 81 GELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAK---NQMKVLYVSGEE--SLQQIKM-RAIRLGLPEPNLYVL 154 (454)
T ss_pred HHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHh---cCCcEEEEECcC--CHHHHHH-HHHHcCCChHHeEEc
Confidence 334444433 25679999999999999999999877621 123577876543 3333322 233444322111
Q ss_pred cccCHHHHHHHHHHHhCCceEEEEEecC
Q 002657 239 KSKSLQEKSLDIFKILGEKKFVLLLDDL 266 (896)
Q Consensus 239 ~~~~~~~~~~~l~~~l~~kr~LlVlDdv 266 (896)
...+.+.+...+. +.+.-++|+|.+
T Consensus 155 ~e~~~~~I~~~i~---~~~~~~vVIDSI 179 (454)
T TIGR00416 155 SETNWEQICANIE---EENPQACVIDSI 179 (454)
T ss_pred CCCCHHHHHHHHH---hcCCcEEEEecc
Confidence 1122333332222 224557888887
No 394
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=94.49 E-value=0.07 Score=53.64 Aligned_cols=63 Identities=19% Similarity=0.244 Sum_probs=38.4
Q ss_pred HHHHHHHHhcc--CCCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHH
Q 002657 162 QLEQVWRCLVE--EPAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDLRLENIQE 225 (896)
Q Consensus 162 ~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 225 (896)
+..++++.+.. ++..+|+|.|+||+|||||+-.+...+ ..+++--.++-|+.|.+++--.++.
T Consensus 14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~-~~~g~~VaVlAVDPSSp~tGGAlLG 78 (266)
T PF03308_consen 14 EARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIREL-RERGKRVAVLAVDPSSPFTGGALLG 78 (266)
T ss_dssp HHHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHH-HHTT--EEEEEE-GGGGCC---SS-
T ss_pred HHHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHH-hhcCCceEEEEECCCCCCCCCcccc
Confidence 34556665543 467899999999999999999999888 3233333455566666666544443
No 395
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=94.49 E-value=0.075 Score=52.57 Aligned_cols=87 Identities=21% Similarity=0.273 Sum_probs=53.8
Q ss_pred cchHHHHHHHHHHhcc-------------CCCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHH
Q 002657 157 VGLQSQLEQVWRCLVE-------------EPAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDLRLENI 223 (896)
Q Consensus 157 vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 223 (896)
=|-.++++++-+...- +..+-|..+|++|.|||-+|++|+|+- .. .|+.|-..
T Consensus 180 ggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrt---da-----cfirvigs------ 245 (435)
T KOG0729|consen 180 GGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRT---DA-----CFIRVIGS------ 245 (435)
T ss_pred cchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhccc---Cc-----eEEeehhH------
Confidence 4667777877666532 356678899999999999999999975 23 33433221
Q ss_pred HHHHHHhcCCCCccccccCHHHHHHHHHHHhCC-ceEEEEEecCC
Q 002657 224 QEIIGGKIGLMNESWKSKSLQEKSLDIFKILGE-KKFVLLLDDLW 267 (896)
Q Consensus 224 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~-kr~LlVlDdv~ 267 (896)
++.+.-- ..-......+.+.-+. |-++|.+|.++
T Consensus 246 --elvqkyv--------gegarmvrelf~martkkaciiffdeid 280 (435)
T KOG0729|consen 246 --ELVQKYV--------GEGARMVRELFEMARTKKACIIFFDEID 280 (435)
T ss_pred --HHHHHHh--------hhhHHHHHHHHHHhcccceEEEEeeccc
Confidence 1111110 1122344556666665 45788888884
No 396
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=94.49 E-value=0.076 Score=51.64 Aligned_cols=23 Identities=39% Similarity=0.742 Sum_probs=21.5
Q ss_pred EEEEEcCCCchHHHHHHHHHhhh
Q 002657 177 IVGLYGMGGVGKTTLLTHINNKF 199 (896)
Q Consensus 177 vi~I~G~gGiGKTtLa~~v~~~~ 199 (896)
+|+|.|.+|+||||+|+.+....
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l 23 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQL 23 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999886
No 397
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=94.46 E-value=0.051 Score=50.26 Aligned_cols=39 Identities=21% Similarity=0.319 Sum_probs=28.9
Q ss_pred eEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCC
Q 002657 176 GIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSK 216 (896)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~ 216 (896)
++|.|+|..|+|||||++.+.+... +..+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~--~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELK--RRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHH--HTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHh--HcCCceEEEEEccC
Confidence 4899999999999999999999983 35566666666655
No 398
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=94.45 E-value=0.08 Score=54.94 Aligned_cols=40 Identities=15% Similarity=0.307 Sum_probs=30.9
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCC
Q 002657 174 PAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSK 216 (896)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~ 216 (896)
..+++.|.|.+|+|||++|.+++.... ..-..++|++...
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a---~~Ge~vlyis~Ee 74 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQA---SRGNPVLFVTVES 74 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH---hCCCcEEEEEecC
Confidence 567899999999999999999876542 2234678888764
No 399
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.45 E-value=0.038 Score=55.39 Aligned_cols=23 Identities=22% Similarity=0.354 Sum_probs=20.9
Q ss_pred CeEEEEEcCCCchHHHHHHHHHh
Q 002657 175 AGIVGLYGMGGVGKTTLLTHINN 197 (896)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~ 197 (896)
.+++.|+|+.|.||||+.+.+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 48899999999999999999874
No 400
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=94.45 E-value=0.044 Score=51.19 Aligned_cols=36 Identities=25% Similarity=0.287 Sum_probs=26.7
Q ss_pred CeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEE
Q 002657 175 AGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVV 213 (896)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~ 213 (896)
..||-|.|.+|+||||||+.+.+.+. ..-..+.++.
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~---~~g~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLF---ARGIKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHH---HTTS-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHH---HcCCcEEEec
Confidence 35889999999999999999999882 2234455553
No 401
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=94.43 E-value=0.026 Score=55.28 Aligned_cols=23 Identities=35% Similarity=0.436 Sum_probs=21.1
Q ss_pred EEEEEcCCCchHHHHHHHHHhhh
Q 002657 177 IVGLYGMGGVGKTTLLTHINNKF 199 (896)
Q Consensus 177 vi~I~G~gGiGKTtLa~~v~~~~ 199 (896)
||.|+|++|+||||+|+.++...
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58899999999999999998876
No 402
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.42 E-value=0.22 Score=54.84 Aligned_cols=61 Identities=23% Similarity=0.315 Sum_probs=37.2
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCC-ccCHHHHHHHHHHhcCCCC
Q 002657 174 PAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSK-DLRLENIQEIIGGKIGLMN 235 (896)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~ 235 (896)
+..+++++|+.|+||||++..++... ......+.+.+++... .....+-+...++.++.+.
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~-~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~ 251 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARA-VIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSV 251 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH-HHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCce
Confidence 35799999999999999999887754 1122233445554332 1223334555666666543
No 403
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=94.39 E-value=0.36 Score=51.47 Aligned_cols=26 Identities=31% Similarity=0.557 Sum_probs=23.9
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHhhh
Q 002657 174 PAGIVGLYGMGGVGKTTLLTHINNKF 199 (896)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (896)
+..+++++|++|+||||++..++...
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l 138 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKY 138 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 46899999999999999999999887
No 404
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=94.37 E-value=0.044 Score=54.54 Aligned_cols=26 Identities=35% Similarity=0.600 Sum_probs=23.1
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHhhh
Q 002657 174 PAGIVGLYGMGGVGKTTLLTHINNKF 199 (896)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (896)
+...|.++||+|.||||+.+.++.+.
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~hl 43 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSHL 43 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHHH
Confidence 45678889999999999999999887
No 405
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=94.37 E-value=0.27 Score=55.96 Aligned_cols=172 Identities=16% Similarity=0.157 Sum_probs=89.1
Q ss_pred ccchHHHHHH---HHHHhccCC---------CeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHH
Q 002657 156 VVGLQSQLEQ---VWRCLVEEP---------AGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDLRLENI 223 (896)
Q Consensus 156 ~vGr~~~~~~---l~~~L~~~~---------~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 223 (896)
..|.++.+++ +++.|.++. .+-|..+|++|.|||.||++++... .+ .| .+.|..
T Consensus 152 VAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA-~V--PF-----f~iSGS------ 217 (596)
T COG0465 152 VAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEA-GV--PF-----FSISGS------ 217 (596)
T ss_pred hcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhccc-CC--Cc-----eeccch------
Confidence 5687766555 555666531 3568899999999999999999886 32 22 111211
Q ss_pred HHHHHHhcCCCCccccccCHHHHHHHHHHHhCCceEEEEEecCCCc------------cc----cccccccCCC-CCCCC
Q 002657 224 QEIIGGKIGLMNESWKSKSLQEKSLDIFKILGEKKFVLLLDDLWQR------------VD----LTKVGVPLPS-PQSSA 286 (896)
Q Consensus 224 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~------------~~----~~~l~~~~~~-~~~~~ 286 (896)
+..+.+- ........+.+.+..++-++++++|.++.. .. +.++..-... ..+.|
T Consensus 218 --~FVemfV-------GvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~g 288 (596)
T COG0465 218 --DFVEMFV-------GVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEG 288 (596)
T ss_pred --hhhhhhc-------CCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCc
Confidence 1111110 111122223344555667899999998532 11 2222222210 11234
Q ss_pred cEEEEecCCHHHHh--hhc---cCcceeccCCChHhHHHHHHHHhcCcccCCCCChHHHHHHHHHHhCCCchH
Q 002657 287 SKVVFTTRSEEICG--LME---AQKKFKVACLSDKDAWELFCHKVGEETLNNHPDIPELAQTVAKECGGMPLA 354 (896)
Q Consensus 287 s~iivTtR~~~v~~--~~~---~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPla 354 (896)
-.|+-.|-.++|.. .+. -+..+.++..+-..-.++++-++........-++. .|++.+-|.--|
T Consensus 289 viviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~----~iAr~tpGfsGA 357 (596)
T COG0465 289 VIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLK----KIARGTPGFSGA 357 (596)
T ss_pred eEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHH----HHhhhCCCcccc
Confidence 44444555555531 112 23456666666566666777665544323223332 277777766543
No 406
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=94.36 E-value=0.15 Score=47.92 Aligned_cols=23 Identities=30% Similarity=0.637 Sum_probs=21.1
Q ss_pred EEEEEcCCCchHHHHHHHHHhhh
Q 002657 177 IVGLYGMGGVGKTTLLTHINNKF 199 (896)
Q Consensus 177 vi~I~G~gGiGKTtLa~~v~~~~ 199 (896)
||.|+|.+|+||||+|+.+....
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l 23 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKL 23 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999876
No 407
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=94.36 E-value=0.73 Score=49.08 Aligned_cols=49 Identities=20% Similarity=0.182 Sum_probs=34.7
Q ss_pred ceeccCCChHhHHHHHHHHhcCcccCCCCChHHHHHHHHHHhCCCchHH
Q 002657 307 KFKVACLSDKDAWELFCHKVGEETLNNHPDIPELAQTVAKECGGMPLAL 355 (896)
Q Consensus 307 ~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai 355 (896)
++++.+++.+|+..++.-............-+...+++.-..+|+|--+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 7899999999999999887755542222333555666766778998543
No 408
>PRK05973 replicative DNA helicase; Provisional
Probab=94.34 E-value=0.23 Score=50.14 Aligned_cols=49 Identities=16% Similarity=0.205 Sum_probs=34.1
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHH
Q 002657 174 PAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDLRLENIQEII 227 (896)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 227 (896)
+..++.|.|.+|+|||+++.++..... +. -..+++++... +..++...+
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~a--~~-Ge~vlyfSlEe--s~~~i~~R~ 111 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEAM--KS-GRTGVFFTLEY--TEQDVRDRL 111 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHH--hc-CCeEEEEEEeC--CHHHHHHHH
Confidence 457899999999999999999877652 22 34566666544 345555554
No 409
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.28 E-value=0.0064 Score=57.89 Aligned_cols=71 Identities=20% Similarity=0.389 Sum_probs=51.1
Q ss_pred ccccccCCcCeEeeccCCCCceEEecCCCccccccCCCccEEEeccCCCCCC--CccccCCCCCCEEeEecCcccch
Q 002657 716 SSLANLKRLNVLRIADCEKLEELKIDYTGEIQHFGFRSLCKVEIARCQKLKD--LTFLVFAPNLESIEVKSCLALEE 790 (896)
Q Consensus 716 ~~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~L~~L~L~~c~~l~~--l~~l~~l~~L~~L~L~~c~~l~~ 790 (896)
..+.+++.++.|.+.+|..+.+...+.++ ...++|+.|+|++|+.+++ +.++..+++|+.|.|.+.+.+..
T Consensus 119 e~L~~l~~i~~l~l~~ck~~dD~~L~~l~----~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~v~~ 191 (221)
T KOG3864|consen 119 EHLRDLRSIKSLSLANCKYFDDWCLERLG----GLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPYVAN 191 (221)
T ss_pred HHHhccchhhhheeccccchhhHHHHHhc----ccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchhhhc
Confidence 34666778888888888877654444443 2578888888888888887 55678888888888877544433
No 410
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=94.26 E-value=0.059 Score=55.86 Aligned_cols=24 Identities=25% Similarity=0.339 Sum_probs=19.6
Q ss_pred eEEEEEcCCCchHHHHHHHHHhhh
Q 002657 176 GIVGLYGMGGVGKTTLLTHINNKF 199 (896)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~v~~~~ 199 (896)
+.|.|.|.+|+||||+|+++...+
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~ 25 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYL 25 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHH
Confidence 468899999999999999999987
No 411
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=94.26 E-value=0.06 Score=52.92 Aligned_cols=53 Identities=19% Similarity=0.211 Sum_probs=37.1
Q ss_pred chHHHHHHHHHHhccCCCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEE
Q 002657 158 GLQSQLEQVWRCLVEEPAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVV 213 (896)
Q Consensus 158 Gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~ 213 (896)
.+..+....++.|. ...++.+.|++|.|||.||.+.+-+. -..+.++.++++.
T Consensus 4 p~~~~Q~~~~~al~--~~~~v~~~G~AGTGKT~LA~a~Al~~-v~~g~~~kiii~R 56 (205)
T PF02562_consen 4 PKNEEQKFALDALL--NNDLVIVNGPAGTGKTFLALAAALEL-VKEGEYDKIIITR 56 (205)
T ss_dssp --SHHHHHHHHHHH--H-SEEEEE--TTSSTTHHHHHHHHHH-HHTTS-SEEEEEE
T ss_pred CCCHHHHHHHHHHH--hCCeEEEECCCCCcHHHHHHHHHHHH-HHhCCCcEEEEEe
Confidence 35566677777777 45699999999999999999988765 3357888888875
No 412
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=94.25 E-value=0.19 Score=48.61 Aligned_cols=119 Identities=20% Similarity=0.195 Sum_probs=63.3
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCC---ccCHHHHHHHHH--HhcCCCC-ccccccCHH---
Q 002657 174 PAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSK---DLRLENIQEIIG--GKIGLMN-ESWKSKSLQ--- 244 (896)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~---~~~~~~~~~~i~--~~l~~~~-~~~~~~~~~--- 244 (896)
....|.|+|..|-||||.|..++-+.. ...+. +..+..-. .......++.+- ....... -.+...+.+
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~--g~G~~-V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~ 97 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAV--GHGKK-VGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDI 97 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHH--HCCCe-EEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHH
Confidence 457899999999999999998877652 23333 33333322 223333433321 0000000 011111111
Q ss_pred ----HHHHHHHHHhCCc-eEEEEEecCC-----CccccccccccCCCCCCCCcEEEEecCCH
Q 002657 245 ----EKSLDIFKILGEK-KFVLLLDDLW-----QRVDLTKVGVPLPSPQSSASKVVFTTRSE 296 (896)
Q Consensus 245 ----~~~~~l~~~l~~k-r~LlVlDdv~-----~~~~~~~l~~~~~~~~~~~s~iivTtR~~ 296 (896)
+.....++.+... -=++|||.+- ...+.+++...+. ....+..||+|-|+.
T Consensus 98 ~~~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~-~rp~~~evVlTGR~~ 158 (191)
T PRK05986 98 AAAREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALN-ARPGMQHVVITGRGA 158 (191)
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHH-cCCCCCEEEEECCCC
Confidence 1223344555444 4499999993 2334444444443 455677999999976
No 413
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=94.24 E-value=0.038 Score=53.45 Aligned_cols=49 Identities=27% Similarity=0.348 Sum_probs=33.6
Q ss_pred CeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHH
Q 002657 175 AGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDLRLENIQEIIGG 229 (896)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 229 (896)
..+|+|-||=|+||||||+.++++. . |. +++=.+.+++-+..+..++-+
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l-~----~~-~~~E~vednp~L~~FY~d~~~ 52 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHL-G----FK-VFYELVEDNPFLDLFYEDPER 52 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHh-C----Cc-eeeecccCChHHHHHHHhHHH
Confidence 4689999999999999999999987 2 22 233334444445555554443
No 414
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=94.23 E-value=0.09 Score=61.17 Aligned_cols=73 Identities=14% Similarity=0.168 Sum_probs=55.9
Q ss_pred ccchHHHHHHHHHHhccCCCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHhcCC
Q 002657 156 VVGLQSQLEQVWRCLVEEPAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDLRLENIQEIIGGKIGL 233 (896)
Q Consensus 156 ~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 233 (896)
++|.++.++.|...+... +.+.++|.+|+||||+|+.+.+... ..+++..+|..-+ ..+...+++.++..++.
T Consensus 33 vigq~~a~~~L~~~~~~~--~~~l~~G~~G~GKttla~~l~~~l~--~~~~~~~~~~~np-~~~~~~~~~~v~~~~G~ 105 (637)
T PRK13765 33 VIGQEHAVEVIKKAAKQR--RHVMMIGSPGTGKSMLAKAMAELLP--KEELQDILVYPNP-EDPNNPKIRTVPAGKGK 105 (637)
T ss_pred cCChHHHHHHHHHHHHhC--CeEEEECCCCCcHHHHHHHHHHHcC--hHhHHHheEeeCC-CcchHHHHHHHHHhcCH
Confidence 789988888888777665 4688999999999999999998762 3456778886653 34677777777776653
No 415
>PRK00131 aroK shikimate kinase; Reviewed
Probab=94.23 E-value=0.041 Score=53.40 Aligned_cols=26 Identities=23% Similarity=0.362 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHhhh
Q 002657 174 PAGIVGLYGMGGVGKTTLLTHINNKF 199 (896)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (896)
+...|.|+|++|+||||+|+.+++..
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999999876
No 416
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.21 E-value=0.18 Score=56.50 Aligned_cols=59 Identities=22% Similarity=0.319 Sum_probs=37.3
Q ss_pred CeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCC-ccCHHHHHHHHHHhcCCC
Q 002657 175 AGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSK-DLRLENIQEIIGGKIGLM 234 (896)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~ 234 (896)
.+|++++|+.|+||||++.+++... ..+.....+..++... .....+-++..++.++.+
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~-~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVp 315 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARC-VMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVP 315 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHH-HHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCC
Confidence 4799999999999999999998776 2222222455555432 122334455556666544
No 417
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=94.20 E-value=0.073 Score=61.30 Aligned_cols=44 Identities=23% Similarity=0.330 Sum_probs=37.6
Q ss_pred ccchHHHHHHHHHHhccCCCeEEEEEcCCCchHHHHHHHHHhhh
Q 002657 156 VVGLQSQLEQVWRCLVEEPAGIVGLYGMGGVGKTTLLTHINNKF 199 (896)
Q Consensus 156 ~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (896)
++|.+..++.+...+......-|.|+|++|+|||++|+.+++..
T Consensus 67 iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 110 (531)
T TIGR02902 67 IIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEA 110 (531)
T ss_pred eeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 79999999998887766555667899999999999999998753
No 418
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=94.20 E-value=0.088 Score=46.78 Aligned_cols=44 Identities=18% Similarity=0.277 Sum_probs=33.6
Q ss_pred ccchHHHHHHHHHHhcc-------CCCeEEEEEcCCCchHHHHHHHHHhhh
Q 002657 156 VVGLQSQLEQVWRCLVE-------EPAGIVGLYGMGGVGKTTLLTHINNKF 199 (896)
Q Consensus 156 ~vGr~~~~~~l~~~L~~-------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (896)
++|..-..+.+++.+.+ ++.-|++.+|++|+|||.+++.+++..
T Consensus 27 l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 27 LFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred ccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 67776666666665542 256689999999999999999988874
No 419
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=94.16 E-value=0.11 Score=51.49 Aligned_cols=26 Identities=31% Similarity=0.621 Sum_probs=23.0
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHhhh
Q 002657 174 PAGIVGLYGMGGVGKTTLLTHINNKF 199 (896)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (896)
+-.+++|.|+.|.|||||.+.++.-.
T Consensus 34 ~Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 34 PGELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 55789999999999999999998753
No 420
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=94.16 E-value=0.12 Score=56.79 Aligned_cols=37 Identities=22% Similarity=0.272 Sum_probs=30.3
Q ss_pred HHHHHHHhccCCCeEEEEEcCCCchHHHHHHHHHhhh
Q 002657 163 LEQVWRCLVEEPAGIVGLYGMGGVGKTTLLTHINNKF 199 (896)
Q Consensus 163 ~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (896)
.+.+++.+.......+.|.|.||.|||++.+.+.+..
T Consensus 10 ~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~ 46 (364)
T PF05970_consen 10 FDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYL 46 (364)
T ss_pred HHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHh
Confidence 4455566655667788999999999999999999887
No 421
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=94.12 E-value=0.033 Score=55.40 Aligned_cols=23 Identities=39% Similarity=0.648 Sum_probs=20.9
Q ss_pred EEEEEcCCCchHHHHHHHHHhhh
Q 002657 177 IVGLYGMGGVGKTTLLTHINNKF 199 (896)
Q Consensus 177 vi~I~G~gGiGKTtLa~~v~~~~ 199 (896)
+|+|.|++|+||||+++.+....
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998764
No 422
>PRK06217 hypothetical protein; Validated
Probab=94.12 E-value=0.037 Score=54.18 Aligned_cols=23 Identities=26% Similarity=0.455 Sum_probs=21.4
Q ss_pred EEEEEcCCCchHHHHHHHHHhhh
Q 002657 177 IVGLYGMGGVGKTTLLTHINNKF 199 (896)
Q Consensus 177 vi~I~G~gGiGKTtLa~~v~~~~ 199 (896)
.|.|.|.+|+||||+|+++.+..
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48999999999999999999876
No 423
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.11 E-value=0.16 Score=49.76 Aligned_cols=63 Identities=13% Similarity=0.188 Sum_probs=39.8
Q ss_pred HHHHHHhCCceEEEEEecCCCcccccccc---ccCCCCCCCCcEEEEecCCHHHHhhhccCcceec
Q 002657 248 LDIFKILGEKKFVLLLDDLWQRVDLTKVG---VPLPSPQSSASKVVFTTRSEEICGLMEAQKKFKV 310 (896)
Q Consensus 248 ~~l~~~l~~kr~LlVlDdv~~~~~~~~l~---~~~~~~~~~~s~iivTtR~~~v~~~~~~~~~~~l 310 (896)
..+.+.+--++-+.|||..++--+.+.+. ..+..-...|+-+++.|..+.++.....+.+|-+
T Consensus 153 ~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vhvl 218 (251)
T COG0396 153 NEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVL 218 (251)
T ss_pred HHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEEE
Confidence 34555555677899999998765544432 1111123457778888888888888766655433
No 424
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=94.11 E-value=0.18 Score=50.94 Aligned_cols=123 Identities=19% Similarity=0.222 Sum_probs=69.4
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHhhhccCCC----------CC---CeEEEEEeCCcc------CH--------------
Q 002657 174 PAGIVGLYGMGGVGKTTLLTHINNKFLQVPN----------DF---DCVIWVVVSKDL------RL-------------- 220 (896)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----------~f---~~~~wv~~~~~~------~~-------------- 220 (896)
.-..++|+|+.|.|||||++.+..-....++ .+ ..+.||.=...+ ++
T Consensus 29 ~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~ 108 (254)
T COG1121 29 KGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGW 108 (254)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccc
Confidence 4479999999999999999999874311111 01 245665411110 11
Q ss_pred --------HHHHHHHHHhcCCCC---ccccccCHHHH-HHHHHHHhCCceEEEEEecCCCcc------ccccccccCCCC
Q 002657 221 --------ENIQEIIGGKIGLMN---ESWKSKSLQEK-SLDIFKILGEKKFVLLLDDLWQRV------DLTKVGVPLPSP 282 (896)
Q Consensus 221 --------~~~~~~i~~~l~~~~---~~~~~~~~~~~-~~~l~~~l~~kr~LlVlDdv~~~~------~~~~l~~~~~~~ 282 (896)
.+...+.++.++... ..+...+-.+. ...+.+.|..++=|++||.--... ...++...+.
T Consensus 109 ~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~-- 186 (254)
T COG1121 109 FRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELR-- 186 (254)
T ss_pred cccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHH--
Confidence 234444555554322 11222232233 334677888889999999974322 2333333332
Q ss_pred CCCCcEEEEecCCHHHH
Q 002657 283 QSSASKVVFTTRSEEIC 299 (896)
Q Consensus 283 ~~~~s~iivTtR~~~v~ 299 (896)
..|..|+++|.+-...
T Consensus 187 -~eg~tIl~vtHDL~~v 202 (254)
T COG1121 187 -QEGKTVLMVTHDLGLV 202 (254)
T ss_pred -HCCCEEEEEeCCcHHh
Confidence 2388899999986543
No 425
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=94.11 E-value=0.069 Score=52.28 Aligned_cols=37 Identities=30% Similarity=0.463 Sum_probs=30.0
Q ss_pred CeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEe
Q 002657 175 AGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVV 214 (896)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~ 214 (896)
.++|.|+|+.|+|||||++.+.... ...|...++.+-
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~---~~~~~~~v~~TT 38 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEF---PDKFGRVVSHTT 38 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHS---TTTEEEEEEEES
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc---ccccccceeecc
Confidence 4789999999999999999999886 466765555543
No 426
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=94.10 E-value=0.22 Score=49.88 Aligned_cols=26 Identities=27% Similarity=0.475 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHhhh
Q 002657 174 PAGIVGLYGMGGVGKTTLLTHINNKF 199 (896)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (896)
+-.+++|.|..|.|||||++.+..-.
T Consensus 33 ~G~~~~i~G~nGsGKSTLl~~l~Gl~ 58 (207)
T cd03369 33 AGEKIGIVGRTGAGKSTLILALFRFL 58 (207)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 55789999999999999999997654
No 427
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=94.09 E-value=0.17 Score=56.18 Aligned_cols=93 Identities=18% Similarity=0.256 Sum_probs=58.8
Q ss_pred CCCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCc-cCHHHHHHHHHHhcCCCCc-----cccccCH---
Q 002657 173 EPAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKD-LRLENIQEIIGGKIGLMNE-----SWKSKSL--- 243 (896)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~-----~~~~~~~--- 243 (896)
..-.-++|.|.+|+|||||+.++.+... +.+-+.++++-+.+. ....++..++...-..... ..+....
T Consensus 141 gkGQR~gIfa~~G~GKt~Ll~~~~~~~~--~~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~ 218 (461)
T PRK12597 141 AKGGKTGLFGGAGVGKTVLMMELIFNIS--KQHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARM 218 (461)
T ss_pred ccCCEEEeecCCCCChhHHHHHHHHHHH--hhCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHH
Confidence 3567899999999999999999988762 235677778777654 3456666666543221110 0011111
Q ss_pred --HHHHHHHHHHh---CCceEEEEEecCC
Q 002657 244 --QEKSLDIFKIL---GEKKFVLLLDDLW 267 (896)
Q Consensus 244 --~~~~~~l~~~l---~~kr~LlVlDdv~ 267 (896)
...+..+.+++ +++.+|+++||+-
T Consensus 219 ~a~~~a~tiAEyfrd~~G~~VLl~~DslT 247 (461)
T PRK12597 219 RVVLTGLTIAEYLRDEEKEDVLLFIDNIF 247 (461)
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEeccch
Confidence 11223355665 3799999999993
No 428
>PRK05439 pantothenate kinase; Provisional
Probab=94.08 E-value=0.38 Score=50.73 Aligned_cols=27 Identities=26% Similarity=0.334 Sum_probs=23.8
Q ss_pred CCCeEEEEEcCCCchHHHHHHHHHhhh
Q 002657 173 EPAGIVGLYGMGGVGKTTLLTHINNKF 199 (896)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (896)
...-+|+|.|.+|+||||+|+.+....
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l 110 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALL 110 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 356799999999999999999998765
No 429
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=94.08 E-value=0.035 Score=53.96 Aligned_cols=23 Identities=39% Similarity=0.593 Sum_probs=21.2
Q ss_pred EEEEEcCCCchHHHHHHHHHhhh
Q 002657 177 IVGLYGMGGVGKTTLLTHINNKF 199 (896)
Q Consensus 177 vi~I~G~gGiGKTtLa~~v~~~~ 199 (896)
+|+|.|.+|+||||+|+.+....
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999875
No 430
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.07 E-value=0.93 Score=46.08 Aligned_cols=168 Identities=17% Similarity=0.261 Sum_probs=91.0
Q ss_pred ccchHHHHHHHHHHhcc------------CCCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHH
Q 002657 156 VVGLQSQLEQVWRCLVE------------EPAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDLRLENI 223 (896)
Q Consensus 156 ~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 223 (896)
+.|.+...+.|.+...= ...+-|.++|++|.||+.||++|+... .. -|.+||.. ++
T Consensus 135 VAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEA---nS-----TFFSvSSS----DL 202 (439)
T KOG0739|consen 135 VAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEA---NS-----TFFSVSSS----DL 202 (439)
T ss_pred hccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhc---CC-----ceEEeehH----HH
Confidence 56888888888776531 146789999999999999999999875 12 23344432 11
Q ss_pred HHHHHHhcCCCCccccccCHHHHHHHHHHHh-CCceEEEEEecCCCc---------ccccccc----ccCC--CCCCCCc
Q 002657 224 QEIIGGKIGLMNESWKSKSLQEKSLDIFKIL-GEKKFVLLLDDLWQR---------VDLTKVG----VPLP--SPQSSAS 287 (896)
Q Consensus 224 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~---------~~~~~l~----~~~~--~~~~~~s 287 (896)
... .++ .-+.+...+.+.- ++|+-+|.+|.++.. +.-..+. .... .....|.
T Consensus 203 vSK---WmG---------ESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gv 270 (439)
T KOG0739|consen 203 VSK---WMG---------ESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGV 270 (439)
T ss_pred HHH---Hhc---------cHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCce
Confidence 111 111 1233444455444 468999999999631 1111111 1111 0233455
Q ss_pred EEEEecCCHHHHhhh---ccCcceeccCCChHhHH-HHHHHHhcCcccCCCCChHHHHHHHHHHhCCC
Q 002657 288 KVVFTTRSEEICGLM---EAQKKFKVACLSDKDAW-ELFCHKVGEETLNNHPDIPELAQTVAKECGGM 351 (896)
Q Consensus 288 ~iivTtR~~~v~~~~---~~~~~~~l~~L~~~e~~-~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~Gl 351 (896)
-|+-.|..+-+.... .-...|.+ ||.+..|. .+|.-+.+... +.-.+.--++++++..|.
T Consensus 271 LVLgATNiPw~LDsAIRRRFekRIYI-PLPe~~AR~~MF~lhlG~tp---~~LT~~d~~eL~~kTeGy 334 (439)
T KOG0739|consen 271 LVLGATNIPWVLDSAIRRRFEKRIYI-PLPEAHARARMFKLHLGDTP---HVLTEQDFKELARKTEGY 334 (439)
T ss_pred EEEecCCCchhHHHHHHHHhhcceec-cCCcHHHhhhhheeccCCCc---cccchhhHHHHHhhcCCC
Confidence 666677765443221 11222333 55666665 46666665432 111233346666777654
No 431
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=94.06 E-value=0.23 Score=54.83 Aligned_cols=89 Identities=20% Similarity=0.277 Sum_probs=52.5
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCcc-CHHHHHHHHHHhcCCCCc-----cccccCHH---
Q 002657 174 PAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDL-RLENIQEIIGGKIGLMNE-----SWKSKSLQ--- 244 (896)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~-----~~~~~~~~--- 244 (896)
+-..++|+|..|+|||||++.+++.. ..+.++++-+.+.. ...++..+.+..-+.... ..+.....
T Consensus 157 ~Gqri~I~G~sG~GKTtLL~~I~~~~-----~~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~ 231 (442)
T PRK08927 157 RGQRMGIFAGSGVGKSVLLSMLARNA-----DADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQ 231 (442)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc-----CCCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHH
Confidence 56789999999999999999998764 22455556565433 344555444433221110 00111111
Q ss_pred --HHHHHHHHHh--CCceEEEEEecCC
Q 002657 245 --EKSLDIFKIL--GEKKFVLLLDDLW 267 (896)
Q Consensus 245 --~~~~~l~~~l--~~kr~LlVlDdv~ 267 (896)
..+..+.+++ +++.+|+++||+-
T Consensus 232 a~~~a~tiAEyfrd~G~~Vll~~DslT 258 (442)
T PRK08927 232 AAYLTLAIAEYFRDQGKDVLCLMDSVT 258 (442)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEEeCcH
Confidence 1122344554 5899999999993
No 432
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=94.06 E-value=0.11 Score=54.02 Aligned_cols=54 Identities=20% Similarity=0.245 Sum_probs=41.0
Q ss_pred CCCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHhcC
Q 002657 173 EPAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDLRLENIQEIIGGKIG 232 (896)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 232 (896)
+..+++.|+|.+|+|||+++.++.... ......++||+.... ...+.+.+.+ ++
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~~---~~~ge~vlyvs~~e~--~~~l~~~~~~-~g 74 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYEG---AREGEPVLYVSTEES--PEELLENARS-FG 74 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHH---HhcCCcEEEEEecCC--HHHHHHHHHH-cC
Confidence 467899999999999999999998876 344788999988764 4444444443 44
No 433
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=94.04 E-value=0.042 Score=53.58 Aligned_cols=24 Identities=29% Similarity=0.486 Sum_probs=21.7
Q ss_pred eEEEEEcCCCchHHHHHHHHHhhh
Q 002657 176 GIVGLYGMGGVGKTTLLTHINNKF 199 (896)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~v~~~~ 199 (896)
.+++|+|++|+||||+++.+....
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~ 25 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARL 25 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999998875
No 434
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=94.03 E-value=0.12 Score=52.84 Aligned_cols=53 Identities=34% Similarity=0.357 Sum_probs=29.5
Q ss_pred EEEEEcCCCchHHHHHHHHHhhhcc----CCCCCCeEEEEEeCCccCHHHHHHHHHH
Q 002657 177 IVGLYGMGGVGKTTLLTHINNKFLQ----VPNDFDCVIWVVVSKDLRLENIQEIIGG 229 (896)
Q Consensus 177 vi~I~G~gGiGKTtLa~~v~~~~~~----~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 229 (896)
+..|+|++|.||||++..+...... ....-...+-++...+..+..++..+.+
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 7889999999999877777666411 0123344444555444445555554444
No 435
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=94.02 E-value=0.088 Score=53.69 Aligned_cols=63 Identities=22% Similarity=0.283 Sum_probs=45.2
Q ss_pred HHHHHHhcc--CCCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHH
Q 002657 164 EQVWRCLVE--EPAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDLRLENIQEII 227 (896)
Q Consensus 164 ~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 227 (896)
.+++..+.. ++..||+|.|.||+|||||.-.+...+ ..+++--.++=|+.|.+++--.++.+=
T Consensus 38 ~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l-~~~G~rVaVlAVDPSSp~TGGsiLGDR 102 (323)
T COG1703 38 RELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGREL-RERGHRVAVLAVDPSSPFTGGSILGDR 102 (323)
T ss_pred HHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHH-HHCCcEEEEEEECCCCCCCCccccccH
Confidence 455555543 567799999999999999999999888 444554566677777777655554443
No 436
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.00 E-value=0.64 Score=48.97 Aligned_cols=30 Identities=37% Similarity=0.517 Sum_probs=25.4
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHhhhccCCCCC
Q 002657 174 PAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDF 206 (896)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f 206 (896)
..+-|..+|++|.|||-||++++.+. ...|
T Consensus 126 p~kGiLL~GPpG~GKTmlAKA~Akea---ga~f 155 (386)
T KOG0737|consen 126 PPKGILLYGPPGTGKTMLAKAIAKEA---GANF 155 (386)
T ss_pred CCccceecCCCCchHHHHHHHHHHHc---CCCc
Confidence 45678899999999999999999986 4555
No 437
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=93.99 E-value=0.059 Score=54.85 Aligned_cols=88 Identities=26% Similarity=0.277 Sum_probs=52.2
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHhcCCCCcc------------c-c-
Q 002657 174 PAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDLRLENIQEIIGGKIGLMNES------------W-K- 239 (896)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~------------~-~- 239 (896)
...++.|.|.+|+|||+++.++.....+ ..=+.++|++...+ ..++.+.+. .++..... . .
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~--~~ge~vlyvs~ee~--~~~l~~~~~-s~g~d~~~~~~~g~l~~~d~~~~~ 92 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLK--NFGEKVLYVSFEEP--PEELIENMK-SFGWDLEEYEDSGKLKIIDAFPER 92 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHH--HHT--EEEEESSS---HHHHHHHHH-TTTS-HHHHHHTTSEEEEESSGGG
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhh--hcCCcEEEEEecCC--HHHHHHHHH-HcCCcHHHHhhcCCEEEEeccccc
Confidence 5689999999999999999997654311 11345778877554 344444433 33321100 0 0
Q ss_pred ----ccCHHHHHHHHHHHhCC-ceEEEEEecC
Q 002657 240 ----SKSLQEKSLDIFKILGE-KKFVLLLDDL 266 (896)
Q Consensus 240 ----~~~~~~~~~~l~~~l~~-kr~LlVlDdv 266 (896)
..+.......+.+.++. +.-.+|+|.+
T Consensus 93 ~~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsl 124 (226)
T PF06745_consen 93 IGWSPNDLEELLSKIREAIEELKPDRVVIDSL 124 (226)
T ss_dssp ST-TSCCHHHHHHHHHHHHHHHTSSEEEEETH
T ss_pred ccccccCHHHHHHHHHHHHHhcCCCEEEEECH
Confidence 24556666666666543 3467888887
No 438
>PRK05922 type III secretion system ATPase; Validated
Probab=93.99 E-value=0.15 Score=56.16 Aligned_cols=90 Identities=12% Similarity=0.207 Sum_probs=51.1
Q ss_pred CCCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCC-ccCHHHHHHHHHHhcCCCCcc-----ccccCHH--
Q 002657 173 EPAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSK-DLRLENIQEIIGGKIGLMNES-----WKSKSLQ-- 244 (896)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~-- 244 (896)
.+-..++|+|..|+|||||++.+.+.. ..+...++.++. .....+.+.+........... .+.....
T Consensus 155 ~~GqrigI~G~nG~GKSTLL~~Ia~~~-----~~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~ 229 (434)
T PRK05922 155 GKGQRIGVFSEPGSGKSSLLSTIAKGS-----KSTINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKV 229 (434)
T ss_pred cCCcEEEEECCCCCChHHHHHHHhccC-----CCCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHH
Confidence 355679999999999999999998764 223333333333 223445555544433221110 0111111
Q ss_pred ---HHHHHHHHHh--CCceEEEEEecCC
Q 002657 245 ---EKSLDIFKIL--GEKKFVLLLDDLW 267 (896)
Q Consensus 245 ---~~~~~l~~~l--~~kr~LlVlDdv~ 267 (896)
..+..+.+++ +++.+|+++||+-
T Consensus 230 ~a~~~a~tiAEyfrd~G~~VLl~~DslT 257 (434)
T PRK05922 230 IAGRAAMTIAEYFRDQGHRVLFIMDSLS 257 (434)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEeccchh
Confidence 1222345555 5899999999993
No 439
>PRK00889 adenylylsulfate kinase; Provisional
Probab=93.95 E-value=0.054 Score=52.58 Aligned_cols=26 Identities=31% Similarity=0.459 Sum_probs=23.6
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHhhh
Q 002657 174 PAGIVGLYGMGGVGKTTLLTHINNKF 199 (896)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (896)
+..+|.|+|++|+||||+|+.++...
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l 28 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKL 28 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999999887
No 440
>PRK08149 ATP synthase SpaL; Validated
Probab=93.95 E-value=0.22 Score=54.86 Aligned_cols=90 Identities=14% Similarity=0.223 Sum_probs=52.9
Q ss_pred CCCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCC-ccCHHHHHHHHHHhcCCCC-----ccccccC----
Q 002657 173 EPAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSK-DLRLENIQEIIGGKIGLMN-----ESWKSKS---- 242 (896)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~-----~~~~~~~---- 242 (896)
.+-..++|+|..|+|||||++.+++.. ..+.++...+.. ..+..++..+......... ...+...
T Consensus 149 ~~Gq~i~I~G~sG~GKTTLl~~i~~~~-----~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~ 223 (428)
T PRK08149 149 GVGQRMGIFASAGCGKTSLMNMLIEHS-----EADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRC 223 (428)
T ss_pred ecCCEEEEECCCCCChhHHHHHHhcCC-----CCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHH
Confidence 356789999999999999999998754 223433444433 3355666666665432211 0001111
Q ss_pred -HHHHHHHHHHHh--CCceEEEEEecCC
Q 002657 243 -LQEKSLDIFKIL--GEKKFVLLLDDLW 267 (896)
Q Consensus 243 -~~~~~~~l~~~l--~~kr~LlVlDdv~ 267 (896)
....+..+.+++ ++|.+|+++||+-
T Consensus 224 ~a~~~a~tiAE~fr~~G~~Vll~~DslT 251 (428)
T PRK08149 224 NAALVATTVAEYFRDQGKRVVLFIDSMT 251 (428)
T ss_pred hHHHHHHHHHHHHHHcCCCEEEEccchH
Confidence 111222344444 5899999999993
No 441
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=93.95 E-value=0.26 Score=52.39 Aligned_cols=90 Identities=23% Similarity=0.301 Sum_probs=51.7
Q ss_pred CCCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeC-CccCHHHHHHHHHHhcCCCCc-----cccccCHH--
Q 002657 173 EPAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVS-KDLRLENIQEIIGGKIGLMNE-----SWKSKSLQ-- 244 (896)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~-~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~-- 244 (896)
.....++|+|..|+|||||++.+.... . -+......+. +..+..++.......-+.... ..+.....
T Consensus 67 ~~Gqri~I~G~sG~GKTtLl~~Ia~~~-~----~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~ 141 (326)
T cd01136 67 GKGQRLGIFAGSGVGKSTLLGMIARGT-T----ADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRV 141 (326)
T ss_pred cCCcEEEEECCCCCChHHHHHHHhCCC-C----CCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHH
Confidence 355789999999999999999998764 1 2333344443 334556666555544322110 00111111
Q ss_pred ---HHHHHHHHHh--CCceEEEEEecCC
Q 002657 245 ---EKSLDIFKIL--GEKKFVLLLDDLW 267 (896)
Q Consensus 245 ---~~~~~l~~~l--~~kr~LlVlDdv~ 267 (896)
.....+.+++ ++|.+|+++||+-
T Consensus 142 ~~~~~a~~~AEyfr~~g~~Vll~~Dslt 169 (326)
T cd01136 142 KAAYTATAIAEYFRDQGKDVLLLMDSLT 169 (326)
T ss_pred HHHHHHHHHHHHHHHcCCCeEEEeccch
Confidence 1122233444 5899999999983
No 442
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=93.95 E-value=0.039 Score=51.71 Aligned_cols=23 Identities=30% Similarity=0.566 Sum_probs=21.2
Q ss_pred EEEEEcCCCchHHHHHHHHHhhh
Q 002657 177 IVGLYGMGGVGKTTLLTHINNKF 199 (896)
Q Consensus 177 vi~I~G~gGiGKTtLa~~v~~~~ 199 (896)
+|.|.|.+|+||||+|+.+....
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999875
No 443
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=93.94 E-value=0.27 Score=56.12 Aligned_cols=97 Identities=16% Similarity=0.123 Sum_probs=57.2
Q ss_pred HHHHHHhccC--CCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHhcCCCCccc---
Q 002657 164 EQVWRCLVEE--PAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDLRLENIQEIIGGKIGLMNESW--- 238 (896)
Q Consensus 164 ~~l~~~L~~~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~--- 238 (896)
..+-+.|..+ .-.++.|.|++|+|||||+.++..... ..-+.+++++... +..++...+ +.++.....+
T Consensus 250 ~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~---~~ge~~~y~s~eE--s~~~i~~~~-~~lg~~~~~~~~~ 323 (484)
T TIGR02655 250 VRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENAC---ANKERAILFAYEE--SRAQLLRNA-YSWGIDFEEMEQQ 323 (484)
T ss_pred HhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEEEEeeC--CHHHHHHHH-HHcCCChHHHhhC
Confidence 3444445442 568999999999999999999988762 2234566665543 455655553 4554322110
Q ss_pred ----------cccCHHHHHHHHHHHhCC-ceEEEEEecC
Q 002657 239 ----------KSKSLQEKSLDIFKILGE-KKFVLLLDDL 266 (896)
Q Consensus 239 ----------~~~~~~~~~~~l~~~l~~-kr~LlVlDdv 266 (896)
.....++....+.+.+.. +.-.+|+|.+
T Consensus 324 g~l~~~~~~p~~~~~~~~~~~i~~~i~~~~~~~vvIDsi 362 (484)
T TIGR02655 324 GLLKIICAYPESAGLEDHLQIIKSEIADFKPARIAIDSL 362 (484)
T ss_pred CcEEEEEcccccCChHHHHHHHHHHHHHcCCCEEEEcCH
Confidence 112234555555555533 4446677776
No 444
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.93 E-value=0.036 Score=30.26 Aligned_cols=14 Identities=43% Similarity=0.589 Sum_probs=4.7
Q ss_pred CCEEeccCCCcccc
Q 002657 586 LQHLDLSLTNIEKL 599 (896)
Q Consensus 586 L~~L~Ls~~~i~~l 599 (896)
|+.|+|++|+++++
T Consensus 3 L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 3 LRTLDLSNNRLTSL 16 (17)
T ss_dssp -SEEEETSS--SSE
T ss_pred cCEEECCCCCCCCC
Confidence 44444444444433
No 445
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=93.93 E-value=0.056 Score=51.60 Aligned_cols=26 Identities=27% Similarity=0.406 Sum_probs=23.7
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHhhh
Q 002657 174 PAGIVGLYGMGGVGKTTLLTHINNKF 199 (896)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (896)
...+++|+|..|+|||||++.+....
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l 30 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPAL 30 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHH
Confidence 45699999999999999999999887
No 446
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=93.92 E-value=1.4 Score=46.42 Aligned_cols=167 Identities=12% Similarity=0.051 Sum_probs=89.0
Q ss_pred HHHHHHHhccCCC-eEEEEEcCCCchHHHHHHHHHhhhcc-------CCCCCCeEEEEEe-CCccCHHHHHHHHHHhcCC
Q 002657 163 LEQVWRCLVEEPA-GIVGLYGMGGVGKTTLLTHINNKFLQ-------VPNDFDCVIWVVV-SKDLRLENIQEIIGGKIGL 233 (896)
Q Consensus 163 ~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~-------~~~~f~~~~wv~~-~~~~~~~~~~~~i~~~l~~ 233 (896)
++.+.+.+..+.. .+..++|..|.||+++|..+.+.... ...+-+...++.. .....+.++. ++.+.+..
T Consensus 5 ~~~l~~~i~~~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir-~l~~~~~~ 83 (299)
T PRK07132 5 IKFLDNSATQNKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEFL-SAINKLYF 83 (299)
T ss_pred HHHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHH-HHHHHhcc
Confidence 3445555555544 45568999999999999999887511 0112212333321 1122222222 22332221
Q ss_pred CCccccccCHHHHHHHHHHHhCCceEEEEEecCCCcc--ccccccccCCCCCCCCcEEEEecCC-HHHHh-hhccCccee
Q 002657 234 MNESWKSKSLQEKSLDIFKILGEKKFVLLLDDLWQRV--DLTKVGVPLPSPQSSASKVVFTTRS-EEICG-LMEAQKKFK 309 (896)
Q Consensus 234 ~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~~s~iivTtR~-~~v~~-~~~~~~~~~ 309 (896)
.. +-++++=++|+|++.... ....+...+. ....++.+|++|.+ ..+.. ..+....++
T Consensus 84 ~~-----------------~~~~~~KvvII~~~e~m~~~a~NaLLK~LE-EPp~~t~~il~~~~~~kll~TI~SRc~~~~ 145 (299)
T PRK07132 84 SS-----------------FVQSQKKILIIKNIEKTSNSLLNALLKTIE-EPPKDTYFLLTTKNINKVLPTIVSRCQVFN 145 (299)
T ss_pred CC-----------------cccCCceEEEEecccccCHHHHHHHHHHhh-CCCCCeEEEEEeCChHhChHHHHhCeEEEE
Confidence 10 011466688899985432 2334444443 33445666655543 33332 334567899
Q ss_pred ccCCChHhHHHHHHHHhcCcccCCCCChHHHHHHHHHHhCCCchHHHH
Q 002657 310 VACLSDKDAWELFCHKVGEETLNNHPDIPELAQTVAKECGGMPLALIT 357 (896)
Q Consensus 310 l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~ 357 (896)
+.++++++..+.+... + . + ++.+..++...+|.--|+..
T Consensus 146 f~~l~~~~l~~~l~~~-~-~----~---~~~a~~~a~~~~~~~~a~~~ 184 (299)
T PRK07132 146 VKEPDQQKILAKLLSK-N-K----E---KEYNWFYAYIFSNFEQAEKY 184 (299)
T ss_pred CCCCCHHHHHHHHHHc-C-C----C---hhHHHHHHHHcCCHHHHHHH
Confidence 9999999998877654 1 1 1 23366666666663344443
No 447
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=93.91 E-value=0.05 Score=52.80 Aligned_cols=25 Identities=20% Similarity=0.359 Sum_probs=22.4
Q ss_pred CeEEEEEcCCCchHHHHHHHHHhhh
Q 002657 175 AGIVGLYGMGGVGKTTLLTHINNKF 199 (896)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (896)
.++|.+.|++|+||||+|+.+....
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVL 26 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3689999999999999999998875
No 448
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=93.90 E-value=0.13 Score=56.52 Aligned_cols=90 Identities=23% Similarity=0.280 Sum_probs=49.9
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHhcCCCCc-----cccccCHH----
Q 002657 174 PAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDLRLENIQEIIGGKIGLMNE-----SWKSKSLQ---- 244 (896)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~---- 244 (896)
.-..++|+|..|+|||||++.+.... .....++...-.+.....++....+..-+.... +.+.....
T Consensus 139 ~Gq~i~I~G~sG~GKTtLl~~I~~~~----~~~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a 214 (418)
T TIGR03498 139 RGQRLGIFAGSGVGKSTLLSMLARNT----DADVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQA 214 (418)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCCC----CCCEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHH
Confidence 45689999999999999999888764 122223222222233455555544433221110 00111111
Q ss_pred -HHHHHHHHHh--CCceEEEEEecCC
Q 002657 245 -EKSLDIFKIL--GEKKFVLLLDDLW 267 (896)
Q Consensus 245 -~~~~~l~~~l--~~kr~LlVlDdv~ 267 (896)
..+..+.+++ +++.+|+++||+-
T Consensus 215 ~~~a~~iAEyfrd~G~~Vll~~DslT 240 (418)
T TIGR03498 215 AYTATAIAEYFRDQGKDVLLLMDSVT 240 (418)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccchh
Confidence 1122344555 5789999999983
No 449
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=93.90 E-value=0.26 Score=50.60 Aligned_cols=94 Identities=11% Similarity=0.137 Sum_probs=58.4
Q ss_pred CCCeEEEEEcCCCchHHHHHHHHHhhhcc--CCCCCCeEEEEEeCCcc-CHHHHHHHHHHhcCCCCc-----cccccCHH
Q 002657 173 EPAGIVGLYGMGGVGKTTLLTHINNKFLQ--VPNDFDCVIWVVVSKDL-RLENIQEIIGGKIGLMNE-----SWKSKSLQ 244 (896)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~--~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~-----~~~~~~~~ 244 (896)
..-.-++|.|-.|+|||+|+..+.+.. . .+.+-+.++++-+.+.. ...++..++...=..... ..+.....
T Consensus 67 g~GQR~gIfgg~GvGKt~L~~~i~~~~-~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~ 145 (276)
T cd01135 67 VRGQKIPIFSGSGLPHNELAAQIARQA-GVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIE 145 (276)
T ss_pred ccCCEEEeecCCCCChhHHHHHHHHhh-hccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHH
Confidence 355678999999999999999998765 2 12235678888887654 466677766654221110 00111111
Q ss_pred -----HHHHHHHHHh--C-CceEEEEEecCC
Q 002657 245 -----EKSLDIFKIL--G-EKKFVLLLDDLW 267 (896)
Q Consensus 245 -----~~~~~l~~~l--~-~kr~LlVlDdv~ 267 (896)
.....+.+++ + ++.+|+++||+-
T Consensus 146 r~~a~~~a~aiAEyfrd~~g~~VLl~~D~lt 176 (276)
T cd01135 146 RIITPRMALTTAEYLAYEKGKHVLVILTDMT 176 (276)
T ss_pred HHHHHHHHHHHHHHHHhccCCeEEEEEcChh
Confidence 1122345555 2 689999999984
No 450
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=93.89 E-value=0.078 Score=50.77 Aligned_cols=44 Identities=20% Similarity=0.235 Sum_probs=32.2
Q ss_pred ccchHHHHHHHHHHhcc--CCCeEEEEEcCCCchHHHHHHHHHhhh
Q 002657 156 VVGLQSQLEQVWRCLVE--EPAGIVGLYGMGGVGKTTLLTHINNKF 199 (896)
Q Consensus 156 ~vGr~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (896)
++|....+.++.+.+.. ....-|.|+|..|+||+.+|+.+++.-
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s 46 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNS 46 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCS
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhh
Confidence 46777788888777654 233556699999999999999999864
No 451
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=93.89 E-value=0.068 Score=52.86 Aligned_cols=26 Identities=27% Similarity=0.390 Sum_probs=23.0
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHhhh
Q 002657 174 PAGIVGLYGMGGVGKTTLLTHINNKF 199 (896)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (896)
.-.+++|+|.+|+|||||++.++.-.
T Consensus 32 ~Ge~lgivGeSGsGKSTL~r~l~Gl~ 57 (252)
T COG1124 32 RGETLGIVGESGSGKSTLARLLAGLE 57 (252)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhccc
Confidence 56799999999999999999997654
No 452
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=93.87 E-value=0.094 Score=56.23 Aligned_cols=44 Identities=20% Similarity=0.286 Sum_probs=38.1
Q ss_pred ccchHHHHHHHHHHhccCCCeEEEEEcCCCchHHHHHHHHHhhh
Q 002657 156 VVGLQSQLEQVWRCLVEEPAGIVGLYGMGGVGKTTLLTHINNKF 199 (896)
Q Consensus 156 ~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (896)
+||.++.+..++-.+.++...-+.|.|..|+|||||++.+..-.
T Consensus 6 ivgq~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~~ 49 (337)
T TIGR02030 6 IVGQDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAALL 49 (337)
T ss_pred cccHHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHhh
Confidence 79999999888777777666778899999999999999998655
No 453
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=93.83 E-value=0.28 Score=46.98 Aligned_cols=79 Identities=18% Similarity=0.251 Sum_probs=44.8
Q ss_pred EEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHhCC-
Q 002657 178 VGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDLRLENIQEIIGGKIGLMNESWKSKSLQEKSLDIFKILGE- 256 (896)
Q Consensus 178 i~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~- 256 (896)
+.|.|.+|+|||++|.++.... ...++++.-.+.++. ++.+.|...-......|.... ....+.+.+..
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~------~~~~~y~at~~~~d~-em~~rI~~H~~~R~~~w~t~E---~~~~l~~~l~~~ 71 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAEL------GGPVTYIATAEAFDD-EMAERIARHRKRRPAHWRTIE---TPRDLVSALKEL 71 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhc------CCCeEEEEccCcCCH-HHHHHHHHHHHhCCCCceEee---cHHHHHHHHHhc
Confidence 6799999999999999997542 235677776666654 233333332222222232222 22233333321
Q ss_pred -ceEEEEEecC
Q 002657 257 -KKFVLLLDDL 266 (896)
Q Consensus 257 -kr~LlVlDdv 266 (896)
+.-.+++|.+
T Consensus 72 ~~~~~VLIDcl 82 (169)
T cd00544 72 DPGDVVLIDCL 82 (169)
T ss_pred CCCCEEEEEcH
Confidence 2337999998
No 454
>PRK13949 shikimate kinase; Provisional
Probab=93.80 E-value=0.051 Score=52.23 Aligned_cols=23 Identities=35% Similarity=0.403 Sum_probs=21.4
Q ss_pred EEEEEcCCCchHHHHHHHHHhhh
Q 002657 177 IVGLYGMGGVGKTTLLTHINNKF 199 (896)
Q Consensus 177 vi~I~G~gGiGKTtLa~~v~~~~ 199 (896)
-|.|+|++|+||||+++.+++..
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l 25 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAREL 25 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 58899999999999999999886
No 455
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=93.79 E-value=0.074 Score=57.74 Aligned_cols=112 Identities=13% Similarity=0.119 Sum_probs=62.6
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHH
Q 002657 174 PAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDLRLENIQEIIGGKIGLMNESWKSKSLQEKSLDIFKI 253 (896)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 253 (896)
....|.|.|+.|+||||+++.+.+.. .......++. +.++... ..... ..+-... . ...........++..
T Consensus 121 ~~g~ili~G~tGSGKTT~l~al~~~i---~~~~~~~i~t-iEdp~E~--~~~~~-~~~i~q~-e-vg~~~~~~~~~l~~~ 191 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTLASMIDYI---NKNAAGHIIT-IEDPIEY--VHRNK-RSLINQR-E-VGLDTLSFANALRAA 191 (343)
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHhh---CcCCCCEEEE-EcCChhh--hccCc-cceEEcc-c-cCCCCcCHHHHHHHh
Confidence 45789999999999999999988765 2333444443 2222111 00000 0000000 0 011122345567778
Q ss_pred hCCceEEEEEecCCCccccccccccCCCCCCCCcEEEEecCCHHH
Q 002657 254 LGEKKFVLLLDDLWQRVDLTKVGVPLPSPQSSASKVVFTTRSEEI 298 (896)
Q Consensus 254 l~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~~~s~iivTtR~~~v 298 (896)
++..+=.|++|++.+.+.+..... ....|..|+.|+....+
T Consensus 192 lr~~pd~i~vgEird~~~~~~~l~----aa~tGh~v~~T~Ha~~~ 232 (343)
T TIGR01420 192 LREDPDVILIGEMRDLETVELALT----AAETGHLVFGTLHTNSA 232 (343)
T ss_pred hccCCCEEEEeCCCCHHHHHHHHH----HHHcCCcEEEEEcCCCH
Confidence 888999999999987665543222 12335557766665443
No 456
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=93.77 E-value=0.19 Score=51.53 Aligned_cols=60 Identities=30% Similarity=0.346 Sum_probs=38.4
Q ss_pred EEEEEcCCCchHHHHHHHHHhhhccCCCCC-------CeEEEEEeCCc-cCHHHHHHHHHHhcCCCCc
Q 002657 177 IVGLYGMGGVGKTTLLTHINNKFLQVPNDF-------DCVIWVVVSKD-LRLENIQEIIGGKIGLMNE 236 (896)
Q Consensus 177 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f-------~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~ 236 (896)
++.|+|.||+||||++...+=....-+..| ..+++|++... .++-.=++.+..+++++..
T Consensus 91 ~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl~re~~L~Rl~~v~a~mgLsPa 158 (402)
T COG3598 91 VSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLELYREDILERLEPVRARMGLSPA 158 (402)
T ss_pred eEEEecCCcccHhHHHHHHHHHHHhhHHHhcccccCCCeEEEEEeccChHHHHHHHHHHHHHcCCChH
Confidence 344669999999999987654432222233 35777776543 3455556777888877653
No 457
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=93.77 E-value=0.2 Score=53.00 Aligned_cols=26 Identities=46% Similarity=0.728 Sum_probs=23.4
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHhhh
Q 002657 174 PAGIVGLYGMGGVGKTTLLTHINNKF 199 (896)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (896)
+-.++++.|+.|.|||||.+.+..-.
T Consensus 30 ~Gei~gllG~NGAGKTTllk~l~gl~ 55 (293)
T COG1131 30 PGEIFGLLGPNGAGKTTLLKILAGLL 55 (293)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCc
Confidence 45799999999999999999998865
No 458
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.76 E-value=0.002 Score=62.28 Aligned_cols=85 Identities=20% Similarity=0.126 Sum_probs=56.7
Q ss_pred CCCCCCccEEecccccccccchhhhccCCCCcEEEccCCcccccccccccCCCCCCEEeccCCCccccchhhhcCCCCCE
Q 002657 532 IPKCPHLLTLFLNSNELKIITNDFFQFMPSLKVLSLSRNRRLTNLQLGISKLVSLQHLDLSLTNIEKLSGELKALVNLKC 611 (896)
Q Consensus 532 ~~~~~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~Ls~~~i~~lp~~l~~L~~L~~ 611 (896)
+..+.....|+++.|.+..+... |+-++.|..||++.| .+..+|..++.+..++.+++..|+.+.+|.+++.++.+++
T Consensus 38 i~~~kr~tvld~~s~r~vn~~~n-~s~~t~~~rl~~skn-q~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~ 115 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVNLGKN-FSILTRLVRLDLSKN-QIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKK 115 (326)
T ss_pred hhccceeeeehhhhhHHHhhccc-hHHHHHHHHHhccHh-hHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcch
Confidence 44556666677776655555444 555666666777776 6677777777777777777777777777777777777777
Q ss_pred eeccccc
Q 002657 612 LNLEYTW 618 (896)
Q Consensus 612 L~L~~~~ 618 (896)
+++.++.
T Consensus 116 ~e~k~~~ 122 (326)
T KOG0473|consen 116 NEQKKTE 122 (326)
T ss_pred hhhccCc
Confidence 7776663
No 459
>PRK13947 shikimate kinase; Provisional
Probab=93.73 E-value=0.052 Score=52.47 Aligned_cols=23 Identities=30% Similarity=0.434 Sum_probs=21.3
Q ss_pred EEEEEcCCCchHHHHHHHHHhhh
Q 002657 177 IVGLYGMGGVGKTTLLTHINNKF 199 (896)
Q Consensus 177 vi~I~G~gGiGKTtLa~~v~~~~ 199 (896)
-|.|+|++|+||||+|+.+++..
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~l 25 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTL 25 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh
Confidence 48899999999999999999876
No 460
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=93.72 E-value=0.045 Score=51.61 Aligned_cols=23 Identities=26% Similarity=0.554 Sum_probs=20.4
Q ss_pred EEEEEcCCCchHHHHHHHHHhhh
Q 002657 177 IVGLYGMGGVGKTTLLTHINNKF 199 (896)
Q Consensus 177 vi~I~G~gGiGKTtLa~~v~~~~ 199 (896)
++.|.|++|+||||+|+.+.+..
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 47899999999999999998764
No 461
>PRK00279 adk adenylate kinase; Reviewed
Probab=93.71 E-value=0.2 Score=50.50 Aligned_cols=23 Identities=35% Similarity=0.429 Sum_probs=20.8
Q ss_pred EEEEEcCCCchHHHHHHHHHhhh
Q 002657 177 IVGLYGMGGVGKTTLLTHINNKF 199 (896)
Q Consensus 177 vi~I~G~gGiGKTtLa~~v~~~~ 199 (896)
.|.|.|++|+||||+|+.++...
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~ 24 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKY 24 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998875
No 462
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=93.68 E-value=0.061 Score=52.75 Aligned_cols=105 Identities=15% Similarity=0.079 Sum_probs=52.5
Q ss_pred HHHHHHHhccCCCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHhcCCCCccccccC
Q 002657 163 LEQVWRCLVEEPAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDLRLENIQEIIGGKIGLMNESWKSKS 242 (896)
Q Consensus 163 ~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~ 242 (896)
..+++..... ....+.|+|..|+||||+++.+.... . .. ..++-+.-....... ..... ++...........
T Consensus 14 ~~~~l~~~v~-~g~~i~I~G~tGSGKTTll~aL~~~i-~--~~-~~~i~ied~~E~~~~--~~~~~-~~~~~~~~~~~~~ 85 (186)
T cd01130 14 QAAYLWLAVE-ARKNILISGGTGSGKTTLLNALLAFI-P--PD-ERIITIEDTAELQLP--HPNWV-RLVTRPGNVEGSG 85 (186)
T ss_pred HHHHHHHHHh-CCCEEEEECCCCCCHHHHHHHHHhhc-C--CC-CCEEEECCccccCCC--CCCEE-EEEEecCCCCCCC
Confidence 3444444333 35689999999999999999998765 1 11 122222110000000 00000 0000000000111
Q ss_pred HHHHHHHHHHHhCCceEEEEEecCCCccccccc
Q 002657 243 LQEKSLDIFKILGEKKFVLLLDDLWQRVDLTKV 275 (896)
Q Consensus 243 ~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~l 275 (896)
.......+...++..+=.++++.+.+.+.+..+
T Consensus 86 ~~~~~~~l~~~lR~~pd~i~igEir~~ea~~~~ 118 (186)
T cd01130 86 EVTMADLLRSALRMRPDRIIVGEVRGGEALDLL 118 (186)
T ss_pred ccCHHHHHHHHhccCCCEEEEEccCcHHHHHHH
Confidence 223445556667777778889999877665533
No 463
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.66 E-value=0.0025 Score=61.55 Aligned_cols=94 Identities=23% Similarity=0.114 Sum_probs=80.9
Q ss_pred ccccchhhhccCCCCcEEEccCCcccccccccccCCCCCCEEeccCCCccccchhhhcCCCCCEeeccccccccCCcHHH
Q 002657 548 LKIITNDFFQFMPSLKVLSLSRNRRLTNLQLGISKLVSLQHLDLSLTNIEKLSGELKALVNLKCLNLEYTWSLVTIPQQL 627 (896)
Q Consensus 548 l~~i~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~Ls~~~i~~lp~~l~~L~~L~~L~L~~~~~l~~lp~~~ 627 (896)
++.+|-.-+..+..-++||++.| .+..+-..++.+..|..||++.|.+..+|..++.+..+.++++..| .....|.+
T Consensus 30 ~s~~~v~ei~~~kr~tvld~~s~-r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n-~~~~~p~s- 106 (326)
T KOG0473|consen 30 LSEIPVREIASFKRVTVLDLSSN-RLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKN-NHSQQPKS- 106 (326)
T ss_pred hcccchhhhhccceeeeehhhhh-HHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhcc-chhhCCcc-
Confidence 44566444677889999999999 7888888899999999999999999999999999999999999888 67888976
Q ss_pred HhccccccEEEeeccCC
Q 002657 628 IASFLRLHVLRMFGVGD 644 (896)
Q Consensus 628 i~~l~~L~~L~l~~~~~ 644 (896)
.+.++.++.++..++.+
T Consensus 107 ~~k~~~~k~~e~k~~~~ 123 (326)
T KOG0473|consen 107 QKKEPHPKKNEQKKTEF 123 (326)
T ss_pred ccccCCcchhhhccCcc
Confidence 88999999998876654
No 464
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=93.65 E-value=0.2 Score=58.50 Aligned_cols=72 Identities=17% Similarity=0.166 Sum_probs=49.6
Q ss_pred ccchHHHHHHHHHHhccCCCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHhcC
Q 002657 156 VVGLQSQLEQVWRCLVEEPAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDLRLENIQEIIGGKIG 232 (896)
Q Consensus 156 ~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 232 (896)
++|.++.++.+...+.... -+.++|++|+||||+|+.+.+... ...|...+++.-+ ..+...+++.++..++
T Consensus 20 viG~~~a~~~l~~a~~~~~--~~ll~G~pG~GKT~la~~la~~l~--~~~~~~~~~~~n~-~~~~~~~~~~v~~~~g 91 (608)
T TIGR00764 20 VIGQEEAVEIIKKAAKQKR--NVLLIGEPGVGKSMLAKAMAELLP--DEELEDILVYPNP-EDPNMPRIVEVPAGEG 91 (608)
T ss_pred ccCHHHHHHHHHHHHHcCC--CEEEECCCCCCHHHHHHHHHHHcC--chhheeEEEEeCC-CCCchHHHHHHHHhhc
Confidence 7899988887777776643 555999999999999999998872 2334444433322 2345566777776665
No 465
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=93.65 E-value=0.26 Score=46.77 Aligned_cols=52 Identities=12% Similarity=0.250 Sum_probs=32.6
Q ss_pred HHHHHHHHHhCCceEEEEEecCCCccc---cccccccCCCCCCCCcEEEEecCCH
Q 002657 245 EKSLDIFKILGEKKFVLLLDDLWQRVD---LTKVGVPLPSPQSSASKVVFTTRSE 296 (896)
Q Consensus 245 ~~~~~l~~~l~~kr~LlVlDdv~~~~~---~~~l~~~~~~~~~~~s~iivTtR~~ 296 (896)
++.-.+.+..-.++-|-+||+....-+ -..+...+..+...|..||.||..+
T Consensus 136 qRRvAlArL~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~ 190 (209)
T COG4133 136 QRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQP 190 (209)
T ss_pred HHHHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCc
Confidence 344445666667788999999864333 2222222322566788899999876
No 466
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=93.65 E-value=0.18 Score=54.78 Aligned_cols=44 Identities=23% Similarity=0.292 Sum_probs=36.5
Q ss_pred ccchHHHHHHHHHHhcc---------C-----CCeEEEEEcCCCchHHHHHHHHHhhh
Q 002657 156 VVGLQSQLEQVWRCLVE---------E-----PAGIVGLYGMGGVGKTTLLTHINNKF 199 (896)
Q Consensus 156 ~vGr~~~~~~l~~~L~~---------~-----~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (896)
++|.+..++.+..++.. + ..+.|.++|++|+|||++|+.+....
T Consensus 17 IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l 74 (443)
T PRK05201 17 IIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (443)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 78999999888877743 0 13678999999999999999999876
No 467
>PRK14530 adenylate kinase; Provisional
Probab=93.64 E-value=0.054 Score=54.61 Aligned_cols=24 Identities=29% Similarity=0.439 Sum_probs=21.7
Q ss_pred eEEEEEcCCCchHHHHHHHHHhhh
Q 002657 176 GIVGLYGMGGVGKTTLLTHINNKF 199 (896)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~v~~~~ 199 (896)
+.|.|+|++|+||||+|+.++...
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 368899999999999999998876
No 468
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=93.57 E-value=0.24 Score=49.93 Aligned_cols=44 Identities=34% Similarity=0.480 Sum_probs=34.9
Q ss_pred ccchHHHHHHHHHHhcc-------------CCCeEEEEEcCCCchHHHHHHHHHhhh
Q 002657 156 VVGLQSQLEQVWRCLVE-------------EPAGIVGLYGMGGVGKTTLLTHINNKF 199 (896)
Q Consensus 156 ~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (896)
+=|.+..+.+|.+...= ...+-|.++|.+|.|||-||++|+|.-
T Consensus 187 iGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqT 243 (440)
T KOG0726|consen 187 IGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQT 243 (440)
T ss_pred cccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhccc
Confidence 44788888888877641 135567789999999999999999975
No 469
>PRK06851 hypothetical protein; Provisional
Probab=93.55 E-value=0.78 Score=49.55 Aligned_cols=55 Identities=22% Similarity=0.201 Sum_probs=39.9
Q ss_pred cchHHHHHHHHHHhccCCCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCc
Q 002657 157 VGLQSQLEQVWRCLVEEPAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKD 217 (896)
Q Consensus 157 vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~ 217 (896)
-|.-.-.+.+. .+-.+++.|.|.+|+|||||++.++.... ...++..++-|.+.+
T Consensus 200 ~G~~s~~~~l~----~~~~~~~~i~G~pG~GKstl~~~i~~~a~--~~G~~v~~~hC~~dP 254 (367)
T PRK06851 200 KGAVDFVPSLT----EGVKNRYFLKGRPGTGKSTMLKKIAKAAE--ERGFDVEVYHCGFDP 254 (367)
T ss_pred CcHHhhHHhHh----cccceEEEEeCCCCCcHHHHHHHHHHHHH--hCCCeEEEEeCCCCC
Confidence 45544444444 44568899999999999999999999872 456777666666554
No 470
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=93.54 E-value=0.18 Score=58.67 Aligned_cols=55 Identities=22% Similarity=0.330 Sum_probs=35.8
Q ss_pred CeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHH
Q 002657 175 AGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDLRLENIQEIIGG 229 (896)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 229 (896)
.++..|.|.+|.||||+++.+.....+....-...+.+......-...+.+.+..
T Consensus 167 ~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~ 221 (615)
T PRK10875 167 RRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGK 221 (615)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHh
Confidence 4788999999999999999988765221111124566665555455555555543
No 471
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=93.54 E-value=0.27 Score=54.50 Aligned_cols=93 Identities=17% Similarity=0.279 Sum_probs=57.1
Q ss_pred CCCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCc-cCHHHHHHHHHHhcCCCCc-----cccccCHH--
Q 002657 173 EPAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKD-LRLENIQEIIGGKIGLMNE-----SWKSKSLQ-- 244 (896)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~-----~~~~~~~~-- 244 (896)
..-.-++|.|.+|+|||||+.++.... .. .+-+.++++-+.+. ....++.+++...-..... +.+.....
T Consensus 142 gkGQR~gIfa~~GvGKt~Ll~~i~~~~-~~-~~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~ 219 (463)
T PRK09280 142 AKGGKIGLFGGAGVGKTVLIQELINNI-AK-EHGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARL 219 (463)
T ss_pred ccCCEEEeecCCCCChhHHHHHHHHHH-Hh-cCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHH
Confidence 355789999999999999999987765 21 22245677777654 3466677766654221110 00111111
Q ss_pred ---HHHHHHHHHh---CCceEEEEEecCC
Q 002657 245 ---EKSLDIFKIL---GEKKFVLLLDDLW 267 (896)
Q Consensus 245 ---~~~~~l~~~l---~~kr~LlVlDdv~ 267 (896)
.....+.+++ +++.+|+++||+-
T Consensus 220 ~a~~~a~tiAEyfrd~~G~~VLll~DslT 248 (463)
T PRK09280 220 RVALTGLTMAEYFRDVEGQDVLLFIDNIF 248 (463)
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEecchH
Confidence 1223355665 6799999999993
No 472
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.53 E-value=0.27 Score=57.91 Aligned_cols=87 Identities=23% Similarity=0.365 Sum_probs=52.2
Q ss_pred CeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCccC--HHHHHHHHHHhcCCCCccccccCHHHHHHHHHH
Q 002657 175 AGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDLR--LENIQEIIGGKIGLMNESWKSKSLQEKSLDIFK 252 (896)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 252 (896)
.+||+++|+.|+||||.+.+++... ........+..++.. .+. ..+-++...+.++.+.. ...+..++...+.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~-~~~~G~kkV~lit~D-t~RigA~eQL~~~a~~~gvpv~--~~~~~~~l~~al~- 259 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARC-VAREGADQLALLTTD-SFRIGALEQLRIYGRILGVPVH--AVKDAADLRFALA- 259 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhH-HHHcCCCeEEEecCc-ccchHHHHHHHHHHHhCCCCcc--ccCCHHHHHHHHH-
Confidence 4799999999999999999998765 212222345555543 232 44566667777765442 2234445444443
Q ss_pred HhCCceEEEEEecCC
Q 002657 253 ILGEKKFVLLLDDLW 267 (896)
Q Consensus 253 ~l~~kr~LlVlDdv~ 267 (896)
.++++. +|++|=.-
T Consensus 260 ~~~~~D-~VLIDTAG 273 (767)
T PRK14723 260 ALGDKH-LVLIDTVG 273 (767)
T ss_pred HhcCCC-EEEEeCCC
Confidence 344443 66677663
No 473
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=93.52 E-value=0.059 Score=48.35 Aligned_cols=22 Identities=32% Similarity=0.501 Sum_probs=20.2
Q ss_pred EEEEcCCCchHHHHHHHHHhhh
Q 002657 178 VGLYGMGGVGKTTLLTHINNKF 199 (896)
Q Consensus 178 i~I~G~gGiGKTtLa~~v~~~~ 199 (896)
|.|+|..|+|||||++.+....
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 7899999999999999998765
No 474
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=93.49 E-value=0.075 Score=53.17 Aligned_cols=31 Identities=23% Similarity=0.341 Sum_probs=26.9
Q ss_pred HhccCCCeEEEEEcCCCchHHHHHHHHHhhh
Q 002657 169 CLVEEPAGIVGLYGMGGVGKTTLLTHINNKF 199 (896)
Q Consensus 169 ~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (896)
.+.+.+.++|+++|..|+|||||..++.+..
T Consensus 16 ~~~~~~~~~i~~~G~~gsGKTTli~~l~~~~ 46 (207)
T TIGR00073 16 RLDKHGLVVLNFMSSPGSGKTTLIEKLIDNL 46 (207)
T ss_pred HhhhcCcEEEEEECCCCCCHHHHHHHHHHHH
Confidence 3445689999999999999999999998875
No 475
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=93.49 E-value=0.055 Score=50.47 Aligned_cols=20 Identities=35% Similarity=0.635 Sum_probs=18.8
Q ss_pred EEEEEcCCCchHHHHHHHHH
Q 002657 177 IVGLYGMGGVGKTTLLTHIN 196 (896)
Q Consensus 177 vi~I~G~gGiGKTtLa~~v~ 196 (896)
.|+|.|.||+||||++..+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999997
No 476
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.48 E-value=1.4 Score=50.33 Aligned_cols=152 Identities=18% Similarity=0.182 Sum_probs=81.7
Q ss_pred eEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHhC
Q 002657 176 GIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDLRLENIQEIIGGKIGLMNESWKSKSLQEKSLDIFKILG 255 (896)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 255 (896)
.-|.++|++|+|||-||.+++... ..-+|+|-.+ +++. +.+| .+++.....+.+.-.
T Consensus 702 ~giLLyGppGcGKT~la~a~a~~~--------~~~fisvKGP----ElL~---KyIG--------aSEq~vR~lF~rA~~ 758 (952)
T KOG0735|consen 702 TGILLYGPPGCGKTLLASAIASNS--------NLRFISVKGP----ELLS---KYIG--------ASEQNVRDLFERAQS 758 (952)
T ss_pred cceEEECCCCCcHHHHHHHHHhhC--------CeeEEEecCH----HHHH---HHhc--------ccHHHHHHHHHHhhc
Confidence 458899999999999999998765 1245666544 2222 1222 234444444555556
Q ss_pred CceEEEEEecCCCcc-------------ccccccccCCC-CCCCCcEEEE-ecCCHHHH-hhhcc---CcceeccCCChH
Q 002657 256 EKKFVLLLDDLWQRV-------------DLTKVGVPLPS-PQSSASKVVF-TTRSEEIC-GLMEA---QKKFKVACLSDK 316 (896)
Q Consensus 256 ~kr~LlVlDdv~~~~-------------~~~~l~~~~~~-~~~~~s~iiv-TtR~~~v~-~~~~~---~~~~~l~~L~~~ 316 (896)
.+++++.+|.+++.. ...++...+.. .+-.|--|+- |||-.-+- ..+.. ++.+.-+.-++.
T Consensus 759 a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~ 838 (952)
T KOG0735|consen 759 AKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEP 838 (952)
T ss_pred cCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcH
Confidence 799999999996421 12222222210 2234545554 45533221 11111 223333445566
Q ss_pred hHHHHHHHHhcCcccCCCCChHHHHHHHHHHhCCCchH
Q 002657 317 DAWELFCHKVGEETLNNHPDIPELAQTVAKECGGMPLA 354 (896)
Q Consensus 317 e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPla 354 (896)
|-.+++...+.......+-+ .+.++.+.+|..=|
T Consensus 839 eRl~il~~ls~s~~~~~~vd----l~~~a~~T~g~tgA 872 (952)
T KOG0735|consen 839 ERLEILQVLSNSLLKDTDVD----LECLAQKTDGFTGA 872 (952)
T ss_pred HHHHHHHHHhhccCCccccc----hHHHhhhcCCCchh
Confidence 67777777665332222222 45677777776543
No 477
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=93.47 E-value=0.056 Score=52.75 Aligned_cols=24 Identities=29% Similarity=0.418 Sum_probs=21.8
Q ss_pred eEEEEEcCCCchHHHHHHHHHhhh
Q 002657 176 GIVGLYGMGGVGKTTLLTHINNKF 199 (896)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~v~~~~ 199 (896)
++|+|+|+.|+|||||++.+++..
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 579999999999999999998854
No 478
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=93.47 E-value=0.1 Score=48.96 Aligned_cols=35 Identities=26% Similarity=0.353 Sum_probs=28.8
Q ss_pred HHHHHHHHhccCCCeEEEEEcCCCchHHHHHHHHHhhh
Q 002657 162 QLEQVWRCLVEEPAGIVGLYGMGGVGKTTLLTHINNKF 199 (896)
Q Consensus 162 ~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (896)
.+++|.+++.. ++++++|..|+|||||+..+..+.
T Consensus 25 g~~~l~~~l~~---k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 25 GIEELKELLKG---KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp THHHHHHHHTT---SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CHHHHHHHhcC---CEEEEECCCCCCHHHHHHHHHhhc
Confidence 35666676654 799999999999999999998764
No 479
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=93.46 E-value=0.059 Score=51.57 Aligned_cols=22 Identities=41% Similarity=0.596 Sum_probs=19.6
Q ss_pred EEEEcCCCchHHHHHHHHHhhh
Q 002657 178 VGLYGMGGVGKTTLLTHINNKF 199 (896)
Q Consensus 178 i~I~G~gGiGKTtLa~~v~~~~ 199 (896)
|.|.|.+|+||||+++.+++..
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 6799999999999999999887
No 480
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=93.43 E-value=0.1 Score=55.88 Aligned_cols=44 Identities=20% Similarity=0.303 Sum_probs=39.3
Q ss_pred ccchHHHHHHHHHHhccCCCeEEEEEcCCCchHHHHHHHHHhhh
Q 002657 156 VVGLQSQLEQVWRCLVEEPAGIVGLYGMGGVGKTTLLTHINNKF 199 (896)
Q Consensus 156 ~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (896)
+||.++.+..|...+.++...-|.|.|..|+||||+|+.+++-.
T Consensus 19 ivGq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l 62 (350)
T CHL00081 19 IVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLL 62 (350)
T ss_pred HhChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 79999999888888888878888899999999999999997765
No 481
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=93.43 E-value=0.12 Score=51.19 Aligned_cols=38 Identities=26% Similarity=0.406 Sum_probs=29.5
Q ss_pred HHHHHHHHhccCCCeEEEEEcCCCchHHHHHHHHHhhh
Q 002657 162 QLEQVWRCLVEEPAGIVGLYGMGGVGKTTLLTHINNKF 199 (896)
Q Consensus 162 ~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (896)
+..+.+..+....-+++.|.|.+|.||||+++.+....
T Consensus 5 ~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l~~~~~~~ 42 (196)
T PF13604_consen 5 EQREAVRAILTSGDRVSVLQGPAGTGKTTLLKALAEAL 42 (196)
T ss_dssp HHHHHHHHHHHCTCSEEEEEESTTSTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCeEEEEEECCCCCHHHHHHHHHHHH
Confidence 34445555545566889999999999999999998877
No 482
>PRK15453 phosphoribulokinase; Provisional
Probab=93.36 E-value=0.42 Score=49.19 Aligned_cols=80 Identities=14% Similarity=0.059 Sum_probs=44.3
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCC--ccCHHHHHHHHH--HhcCCCCcc--ccccCHHHHH
Q 002657 174 PAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSK--DLRLENIQEIIG--GKIGLMNES--WKSKSLQEKS 247 (896)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~--~~~~~~~~~~i~--~~l~~~~~~--~~~~~~~~~~ 247 (896)
+..+|+|.|.+|+||||+|+.+.+.+. ..-...+.++... .++..+.-..+. +.-+.+-+. .+..+.+.+.
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if~---~~~~~~~vi~~D~yh~ydr~~~~~~~~~~~r~g~nfdhf~PdAnd~dlL~ 80 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIFR---RENINAAVVEGDSFHRYTRPEMKAAIAKARAAGRHFSHFGPEANLFDELE 80 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHh---hcCCCeEEEecccccccChhhHhhhhHHHHhcCCCCCCCCCCcccHHHHH
Confidence 457999999999999999999987661 1111233333322 223333322221 112211111 2456677777
Q ss_pred HHHHHHhCC
Q 002657 248 LDIFKILGE 256 (896)
Q Consensus 248 ~~l~~~l~~ 256 (896)
+.++.+.++
T Consensus 81 ~~l~~l~~~ 89 (290)
T PRK15453 81 QLFREYGET 89 (290)
T ss_pred HHHHHHhcC
Confidence 777776653
No 483
>PRK00300 gmk guanylate kinase; Provisional
Probab=93.31 E-value=0.069 Score=53.39 Aligned_cols=26 Identities=27% Similarity=0.373 Sum_probs=23.4
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHhhh
Q 002657 174 PAGIVGLYGMGGVGKTTLLTHINNKF 199 (896)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (896)
...+|+|+|++|+|||||++.++...
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 45789999999999999999999875
No 484
>PRK06936 type III secretion system ATPase; Provisional
Probab=93.31 E-value=0.23 Score=54.77 Aligned_cols=90 Identities=20% Similarity=0.307 Sum_probs=53.5
Q ss_pred CCCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCcc-CHHHHHHHHHHhcCCCCc-----cccccCHH--
Q 002657 173 EPAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDL-RLENIQEIIGGKIGLMNE-----SWKSKSLQ-- 244 (896)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~-----~~~~~~~~-- 244 (896)
.+-..++|.|..|+|||||.+.+++.. ..+.++++-+.+.. ...++....+..-+.... +.+.....
T Consensus 160 ~~Gq~~~I~G~sG~GKStLl~~Ia~~~-----~~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~ 234 (439)
T PRK06936 160 GEGQRMGIFAAAGGGKSTLLASLIRSA-----EVDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERA 234 (439)
T ss_pred cCCCEEEEECCCCCChHHHHHHHhcCC-----CCCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHH
Confidence 356789999999999999999998864 23567777776543 345555443332111110 00111111
Q ss_pred ---HHHHHHHHHh--CCceEEEEEecCC
Q 002657 245 ---EKSLDIFKIL--GEKKFVLLLDDLW 267 (896)
Q Consensus 245 ---~~~~~l~~~l--~~kr~LlVlDdv~ 267 (896)
.....+.+++ +++.+|+++||+-
T Consensus 235 ~a~~~a~tiAEyfrd~G~~Vll~~DslT 262 (439)
T PRK06936 235 KAGFVATSIAEYFRDQGKRVLLLMDSVT 262 (439)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEeccchh
Confidence 1112244444 5899999999993
No 485
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=93.29 E-value=0.065 Score=50.71 Aligned_cols=22 Identities=36% Similarity=0.489 Sum_probs=20.3
Q ss_pred EEEEcCCCchHHHHHHHHHhhh
Q 002657 178 VGLYGMGGVGKTTLLTHINNKF 199 (896)
Q Consensus 178 i~I~G~gGiGKTtLa~~v~~~~ 199 (896)
|.|+|++|+||||+|+.+....
T Consensus 2 i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 6899999999999999998875
No 486
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=93.29 E-value=0.074 Score=51.34 Aligned_cols=25 Identities=24% Similarity=0.320 Sum_probs=22.4
Q ss_pred CeEEEEEcCCCchHHHHHHHHHhhh
Q 002657 175 AGIVGLYGMGGVGKTTLLTHINNKF 199 (896)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (896)
...|.|+|+.|+||||+++.+.+..
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l 28 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQL 28 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHc
Confidence 3568999999999999999999875
No 487
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=93.28 E-value=0.26 Score=47.29 Aligned_cols=83 Identities=11% Similarity=0.131 Sum_probs=45.0
Q ss_pred eEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHhcCCCCccccccC-HHHHHHHHHHHh
Q 002657 176 GIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDLRLENIQEIIGGKIGLMNESWKSKS-LQEKSLDIFKIL 254 (896)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~-~~~~~~~l~~~l 254 (896)
.++.|.|.+|+||||+|..+.... . . .++++.-....+ .+..+.|..........|..-. ...+...+....
T Consensus 2 ~~ili~G~~~sGKS~~a~~l~~~~-~--~---~~~~iat~~~~~-~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~ 74 (170)
T PRK05800 2 MLILVTGGARSGKSRFAERLAAQS-G--L---QVLYIATAQPFD-DEMAARIAHHRQRRPAHWQTVEEPLDLAELLRADA 74 (170)
T ss_pred CEEEEECCCCccHHHHHHHHHHHc-C--C---CcEeCcCCCCCh-HHHHHHHHHHHhcCCCCCeEecccccHHHHHHhhc
Confidence 368899999999999999998764 1 1 233444333333 3444444443322232332211 223344444434
Q ss_pred CCceEEEEEecC
Q 002657 255 GEKKFVLLLDDL 266 (896)
Q Consensus 255 ~~kr~LlVlDdv 266 (896)
.+ .-++++|.+
T Consensus 75 ~~-~~~VlID~L 85 (170)
T PRK05800 75 AP-GRCVLVDCL 85 (170)
T ss_pred CC-CCEEEehhH
Confidence 33 236888987
No 488
>PRK09099 type III secretion system ATPase; Provisional
Probab=93.28 E-value=0.29 Score=54.24 Aligned_cols=91 Identities=21% Similarity=0.277 Sum_probs=52.7
Q ss_pred CCCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHhcCCCCc-----cccccCHH---
Q 002657 173 EPAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDLRLENIQEIIGGKIGLMNE-----SWKSKSLQ--- 244 (896)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~--- 244 (896)
.+-..++|.|..|+|||||++.++... . .-..+++..-.+.....++.+.+...-+.... ..+.....
T Consensus 161 ~~Gq~~~I~G~sG~GKTtLl~~ia~~~-~---~d~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~ 236 (441)
T PRK09099 161 GEGQRMGIFAPAGVGKSTLMGMFARGT-Q---CDVNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAK 236 (441)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC-C---CCeEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHH
Confidence 356789999999999999999998764 1 11234443333444566666665544221110 00111111
Q ss_pred --HHHHHHHHHh--CCceEEEEEecCC
Q 002657 245 --EKSLDIFKIL--GEKKFVLLLDDLW 267 (896)
Q Consensus 245 --~~~~~l~~~l--~~kr~LlVlDdv~ 267 (896)
.....+.+++ +++.+|+++||+-
T Consensus 237 a~~~a~tiAEyfrd~G~~VLl~~DslT 263 (441)
T PRK09099 237 AAYVATAIAEYFRDRGLRVLLMMDSLT 263 (441)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeccchh
Confidence 1122344444 5889999999983
No 489
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=93.27 E-value=0.077 Score=49.00 Aligned_cols=47 Identities=30% Similarity=0.408 Sum_probs=31.9
Q ss_pred CeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHhcCCC
Q 002657 175 AGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDLRLENIQEIIGGKIGLM 234 (896)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 234 (896)
..+++|+|.+|+||||+.+.+.... + .+.. .+...+.-+++...+..
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l--~--~~~i---------vNyG~~Mle~A~k~glv 50 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL--V--KHKI---------VNYGDLMLEIAKKKGLV 50 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH--h--hcee---------eeHhHHHHHHHHHhCCc
Confidence 4789999999999999999887654 1 1111 13445666666666653
No 490
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=93.20 E-value=0.14 Score=50.22 Aligned_cols=42 Identities=31% Similarity=0.501 Sum_probs=28.9
Q ss_pred EEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCH
Q 002657 177 IVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDLRL 220 (896)
Q Consensus 177 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~ 220 (896)
.|+|.|-||+||||+|..+...... ++.| .+.-|+...++++
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~-~~~~-~VLvVDaDpd~nL 43 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLS-KGGY-NVLVVDADPDSNL 43 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHh-cCCc-eEEEEeCCCCCCh
Confidence 6899999999999999996666522 2223 3455665555553
No 491
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=93.18 E-value=0.067 Score=52.50 Aligned_cols=24 Identities=29% Similarity=0.508 Sum_probs=21.4
Q ss_pred eEEEEEcCCCchHHHHHHHHHhhh
Q 002657 176 GIVGLYGMGGVGKTTLLTHINNKF 199 (896)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~v~~~~ 199 (896)
.+++|+|+.|+|||||++.++...
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 478999999999999999997764
No 492
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=93.18 E-value=0.29 Score=50.30 Aligned_cols=89 Identities=13% Similarity=0.144 Sum_probs=50.5
Q ss_pred CCeEEEEEcCCCchHHHHH-HHHHhhhccCCCCCCeE-EEEEeCCc-cCHHHHHHHHHHhcCCCC-----ccccccCHHH
Q 002657 174 PAGIVGLYGMGGVGKTTLL-THINNKFLQVPNDFDCV-IWVVVSKD-LRLENIQEIIGGKIGLMN-----ESWKSKSLQE 245 (896)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~~f~~~-~wv~~~~~-~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~ 245 (896)
+-+-++|.|.+|+|||+|| ..+.+.. .-+.+ +++-+.+. ....++.+.+...-.... ...+......
T Consensus 68 rGQr~~Ifg~~g~GKt~L~l~~i~~~~-----~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r 142 (274)
T cd01132 68 RGQRELIIGDRQTGKTAIAIDTIINQK-----GKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQ 142 (274)
T ss_pred cCCEEEeeCCCCCCccHHHHHHHHHhc-----CCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHH
Confidence 4567999999999999996 5565532 23444 55656554 346666666664321110 0001111111
Q ss_pred -----HHHHHHHHh--CCceEEEEEecCC
Q 002657 246 -----KSLDIFKIL--GEKKFVLLLDDLW 267 (896)
Q Consensus 246 -----~~~~l~~~l--~~kr~LlVlDdv~ 267 (896)
.+-.+.+++ +++.+|+++||+-
T Consensus 143 ~~a~~~a~aiAE~fr~~G~~Vlvl~DslT 171 (274)
T cd01132 143 YLAPYTGCAMGEYFMDNGKHALIIYDDLS 171 (274)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEcChH
Confidence 112233333 5799999999994
No 493
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=93.15 E-value=0.063 Score=49.55 Aligned_cols=23 Identities=43% Similarity=0.735 Sum_probs=20.7
Q ss_pred EEEEEcCCCchHHHHHHHHHhhh
Q 002657 177 IVGLYGMGGVGKTTLLTHINNKF 199 (896)
Q Consensus 177 vi~I~G~gGiGKTtLa~~v~~~~ 199 (896)
.|+|+|+.|+|||||++.+.+..
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~ 23 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEF 23 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcC
Confidence 37899999999999999999875
No 494
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=93.13 E-value=0.23 Score=50.67 Aligned_cols=99 Identities=11% Similarity=0.085 Sum_probs=56.6
Q ss_pred ccchHHHHHHHHHHhcc-------CCCeEEEEEcCCCchHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHH
Q 002657 156 VVGLQSQLEQVWRCLVE-------EPAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDCVIWVVVSKDLRLENIQEIIG 228 (896)
Q Consensus 156 ~vGr~~~~~~l~~~L~~-------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 228 (896)
++|..-.++.++..+.+ .+.=|++.+|.+|+||.-.++.+++..-+....-+ ......
T Consensus 84 lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~---------------~V~~fv 148 (344)
T KOG2170|consen 84 LFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSP---------------FVHHFV 148 (344)
T ss_pred hhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhccccch---------------hHHHhh
Confidence 56766666666666643 24568999999999999999999988622111111 111222
Q ss_pred HhcCCCCccccccCHHHHHHHHHHHhC-CceEEEEEecCCCc
Q 002657 229 GKIGLMNESWKSKSLQEKSLDIFKILG-EKKFVLLLDDLWQR 269 (896)
Q Consensus 229 ~~l~~~~~~~~~~~~~~~~~~l~~~l~-~kr~LlVlDdv~~~ 269 (896)
..+.-+.......-.+++...++..++ .+|-|+|+|+++..
T Consensus 149 at~hFP~~~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKm 190 (344)
T KOG2170|consen 149 ATLHFPHASKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKL 190 (344)
T ss_pred hhccCCChHHHHHHHHHHHHHHHHHHHhcCCceEEechhhhc
Confidence 222222111111122334444444443 58999999999753
No 495
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=93.12 E-value=0.045 Score=53.66 Aligned_cols=21 Identities=29% Similarity=0.319 Sum_probs=18.7
Q ss_pred EEEEEcCCCchHHHHHHHHHh
Q 002657 177 IVGLYGMGGVGKTTLLTHINN 197 (896)
Q Consensus 177 vi~I~G~gGiGKTtLa~~v~~ 197 (896)
++.|.|+.|.||||+.+.+.-
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~ 21 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGL 21 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHH
Confidence 477999999999999999873
No 496
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=93.11 E-value=0.078 Score=45.93 Aligned_cols=23 Identities=30% Similarity=0.261 Sum_probs=20.5
Q ss_pred CCeEEEEEcCCCchHHHHHHHHH
Q 002657 174 PAGIVGLYGMGGVGKTTLLTHIN 196 (896)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~ 196 (896)
.-..++|+|+.|+|||||++.+.
T Consensus 14 ~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 14 GKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CCEEEEEEcCCCCCHHHHHHHhh
Confidence 34689999999999999999976
No 497
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=93.11 E-value=0.11 Score=55.46 Aligned_cols=44 Identities=20% Similarity=0.323 Sum_probs=35.8
Q ss_pred ccchHHHHHHHHHHhccCCCeEEEEEcCCCchHHHHHHHHHhhh
Q 002657 156 VVGLQSQLEQVWRCLVEEPAGIVGLYGMGGVGKTTLLTHINNKF 199 (896)
Q Consensus 156 ~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (896)
++|.+..++.+.-.+.+.+..-+.+.|.+|+||||+|+.+..-.
T Consensus 10 i~Gq~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~ll 53 (334)
T PRK13407 10 IVGQEEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAALL 53 (334)
T ss_pred hCCHHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHHHC
Confidence 78999988887765554444568899999999999999997765
No 498
>PTZ00185 ATPase alpha subunit; Provisional
Probab=93.10 E-value=0.47 Score=52.75 Aligned_cols=92 Identities=14% Similarity=0.154 Sum_probs=52.0
Q ss_pred CCeEEEEEcCCCchHHHHH-HHHHhhhccC-----CCCCCeEEEEEeCCccC-HHHHHHHHHHhcC-CCCc-----cccc
Q 002657 174 PAGIVGLYGMGGVGKTTLL-THINNKFLQV-----PNDFDCVIWVVVSKDLR-LENIQEIIGGKIG-LMNE-----SWKS 240 (896)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~-----~~~f~~~~wv~~~~~~~-~~~~~~~i~~~l~-~~~~-----~~~~ 240 (896)
.-.-++|.|..|+|||+|| ..+.+.. .+ .++-+.++++.+++..+ ..+ +.+.++.-+ .... ..+.
T Consensus 188 RGQR~lIfGd~GtGKTtLAld~IinQ~-~~~~~~~~~~~~v~VyvaIGeR~rEV~e-i~~~L~e~GaL~~TvVV~AtAde 265 (574)
T PTZ00185 188 RGQRELIVGDRQTGKTSIAVSTIINQV-RINQQILSKNAVISIYVSIGQRCSNVAR-IHRLLRSYGALRYTTVMAATAAE 265 (574)
T ss_pred CCCEEEeecCCCCChHHHHHHHHHhhh-hhccccccCCCCEEEEEEeccchHHHHH-HHHHHHhcCCccceEEEEECCCC
Confidence 4567899999999999997 5566653 11 12445678888887654 334 333333333 1110 0011
Q ss_pred cCHHH-----HHHHHHHHh--CCceEEEEEecCC
Q 002657 241 KSLQE-----KSLDIFKIL--GEKKFVLLLDDLW 267 (896)
Q Consensus 241 ~~~~~-----~~~~l~~~l--~~kr~LlVlDdv~ 267 (896)
....+ ..-.+.+++ +++.+|+|+||+-
T Consensus 266 p~~~r~~Apy~a~tiAEYFrd~GkdVLiv~DDLT 299 (574)
T PTZ00185 266 PAGLQYLAPYSGVTMGEYFMNRGRHCLCVYDDLS 299 (574)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcCch
Confidence 11111 112233444 5899999999994
No 499
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=93.09 E-value=0.061 Score=51.54 Aligned_cols=22 Identities=27% Similarity=0.597 Sum_probs=19.8
Q ss_pred EEEEcCCCchHHHHHHHHHhhh
Q 002657 178 VGLYGMGGVGKTTLLTHINNKF 199 (896)
Q Consensus 178 i~I~G~gGiGKTtLa~~v~~~~ 199 (896)
|.|+|++|+||||+|+.+.+..
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999875
No 500
>PRK13975 thymidylate kinase; Provisional
Probab=93.08 E-value=0.078 Score=52.59 Aligned_cols=24 Identities=29% Similarity=0.454 Sum_probs=22.5
Q ss_pred eEEEEEcCCCchHHHHHHHHHhhh
Q 002657 176 GIVGLYGMGGVGKTTLLTHINNKF 199 (896)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~v~~~~ 199 (896)
..|+|.|+.|+||||+|+.+++..
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l 26 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKL 26 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999999987
Done!