BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002658
(896 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9T041|MAPT_ARATH Microtubule-associated protein TORTIFOLIA1 OS=Arabidopsis thaliana
GN=TOR1 PE=1 SV=2
Length = 864
Score = 1033 bits (2670), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 561/914 (61%), Positives = 669/914 (73%), Gaps = 71/914 (7%)
Query: 3 SQPNKFTKPAKPTSQGQQSSSA--NASRSSSLSSHLAMVEMKQKILTSLSKLADRDTHQI 60
S P AKPT + SS A + S S SL+S AMVE+KQKILTS+SKLADRDT+QI
Sbjct: 2 STPTTSGSAAKPTRPARSSSLATRSCSNSGSLTSFQAMVELKQKILTSISKLADRDTYQI 61
Query: 61 AIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTK 120
A+EDLEKTIQ+L+ E+LPM LNCLY+S +DPKPAVKKE + LL+ VC LH + T+ H+TK
Sbjct: 62 AVEDLEKTIQSLTPETLPMFLNCLYDSCSDPKPAVKKECLHLLSYVCSLHCDSTAAHLTK 121
Query: 121 IISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGT-----VVGLFVKPLFEAMM 175
II+ IVKRLKDSDSG+++ACRD+IG+LS +YL GKEE T VGLFVKPLFEAM
Sbjct: 122 IIAQIVKRLKDSDSGVRDACRDTIGALSGIYLKGKEEGTNTGSASLAVGLFVKPLFEAMG 181
Query: 176 EQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQ 235
EQNK VQSGA+MCMA+MVE A+ PPV +FQKLC RICKLLSN +F+AKASLLPVV SLSQ
Sbjct: 182 EQNKVVQSGASMCMARMVESAASPPVTSFQKLCPRICKLLSNSSFLAKASLLPVVSSLSQ 241
Query: 236 VGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSSNLVIDGATSTLTVLEAC 295
VGAIAPQSLE LL+SIH+CLGSTDW TRKAAA+ L+ALA HSS L+ + ST+TVLE C
Sbjct: 242 VGAIAPQSLESLLESIHDCLGSTDWVTRKAAAETLTALASHSSGLIKEKTDSTITVLETC 301
Query: 296 RFDKIKPVRDSMNEALQLWKKIAGK-VDVGSDDQKSSPGGK--APEPGEDLKNLNPSDKR 352
RFDKIKPVR+S+ EALQLWKKI+GK VD SDD K S + + + GE NL
Sbjct: 302 RFDKIKPVRESVTEALQLWKKISGKYVDGASDDSKLSASEQLGSEKNGEKRSNL------ 355
Query: 353 AELSAKGPLNGSSPASASLTKGKAGNISEKAVVILKKKAPALSDKELNPEFFQNLSRGSG 412
A+L K +GS+ + S +KGK G EKAV +LKKKAP LSDK+ NPEFFQ L R
Sbjct: 356 ADLMKKEASDGSTLSPDSASKGK-GCFPEKAVGLLKKKAPVLSDKDFNPEFFQRLERRQS 414
Query: 413 DLPVEVVVPRRCLNSSNSNNEEESDPSDLDSKGRSNRMGNSQTDDFSVSLNNKHRSIDRG 472
VEVVVPRRC N N+EEES DL++ G SNR+ N+Q DD V +G
Sbjct: 415 ---VEVVVPRRCKN----NDEEESGLDDLNAMGSSNRLKNTQADDKQV----------KG 457
Query: 473 TAGGNGKDPRMRAPDVE-----RELSGNRAGFSKTDSQAEGSFINNKGNWLAIQRQLMQL 527
GNG R D +E G+ A S TD+Q+EGSF +N+GNW AIQRQL+QL
Sbjct: 458 RFDGNGSQARTSGDDKAGVVNGKETPGHHAPVSNTDNQSEGSFTSNRGNWSAIQRQLLQL 517
Query: 528 ERQQAHLMNMLQDFMGGSHDSMVTLENRVRGLERVVEDMARDLSISSGRRGSNFAMGFEG 587
ERQQ +LMNMLQ+F+GGSHDSMVTLE RVRGLER+VEDMARDLSISSGRR +N GF
Sbjct: 518 ERQQTNLMNMLQEFIGGSHDSMVTLEGRVRGLERIVEDMARDLSISSGRR-ANLTAGF-- 574
Query: 588 SNNRSLGKYNGFAEYSGTKYNGRTPFGERFAQSDGVAASTRGRGPSWRSDMSDAWDFTAY 647
GKYN FA Y KYNGR P GER +Q+DG RG W SDM+D W +
Sbjct: 575 ------GKYNSFANYPTGKYNGRAP-GERGSQTDGAM-----RGRMWNSDMADDWFIPPH 622
Query: 648 CASRNGQLGSRRAPGGGPVDSRSPKSE-HDNDQVG-GRRAWD-KGTGPVRLGEGPSARSV 704
ASRNGQ G RR SP+SE ++N+ +G GRR WD K +G +R GEGPSARSV
Sbjct: 623 AASRNGQAGPRR----------SPRSEQYENEHMGNGRRGWDNKASGTIRFGEGPSARSV 672
Query: 705 WQASKDEATLEAIRVAGEDSGTSRSARVAI-PELTAEAMGDD-NVGQERDPIWTSWTNAM 762
WQASKDEATLEAIRVAGED R RVA+ PE AEAMGDD N GQERDPIW SW+NAM
Sbjct: 673 WQASKDEATLEAIRVAGEDGAVPRPTRVAVAPE--AEAMGDDDNEGQERDPIWVSWSNAM 730
Query: 763 DAIQVGDLDTAYAEVVSTGDDFLLVKLMDRSGPVVDQLSNEVANEVLHAIGQFLLEQNLF 822
+++VGD+D AYAEV+ GD L++KLMD++GP +DQ+SNE+ANE L+ I QFLL+ +L+
Sbjct: 731 HSLRVGDIDAAYAEVLCAGDQHLVIKLMDKTGPSLDQMSNEIANEALNFISQFLLDHSLY 790
Query: 823 DICLSWIQQLVELVLENGPHVLGIPMELKKELLLNLHEASTTMDPPEDWEGPAPDQLLLQ 882
DICLSW QQL+ELVL++G G+PMELK E+L NL +A +TMDPPEDWEGPAP+QL++Q
Sbjct: 791 DICLSWSQQLLELVLQDGADTFGVPMELKTEILYNLQDACSTMDPPEDWEGPAPEQLVVQ 850
Query: 883 LASAWEIELQQFDK 896
LAS WEI+LQQFDK
Sbjct: 851 LASVWEIDLQQFDK 864
>sp|F4I6M4|SP2L_ARATH Microtubule-associated protein SPIRAL2-like OS=Arabidopsis thaliana
GN=SP2L PE=2 SV=1
Length = 821
Score = 841 bits (2172), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 473/883 (53%), Positives = 599/883 (67%), Gaps = 121/883 (13%)
Query: 38 MVEMKQKILTSLSKLADRDTHQIAIEDLEKTIQTL--SQESLPMLLNCLYESSNDPKPAV 95
MVE+KQ+ILTSLS+L DRDT+QIA++DLEK + ++ S E LP+LL+CL++SS+D K V
Sbjct: 34 MVELKQRILTSLSRLGDRDTYQIAVDDLEKIVVSVPDSPEILPVLLHCLFDSSSDLKAPV 93
Query: 96 KKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGK 155
K+ES+RLL+ +C +++L+ + + KIISHIVKRLKD+D+G+++ACRD+IGSLS +L K
Sbjct: 94 KRESIRLLSFLCLSYTDLSFSQLAKIISHIVKRLKDADNGVRDACRDAIGSLSAQFLKEK 153
Query: 156 EENNG-----TVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCAR 210
E NG ++VGLF KPLFEAM EQNK +QSGAA+CM KM++ A++PPV AFQKLC R
Sbjct: 154 EVENGNYVGSSLVGLFAKPLFEAMAEQNKSLQSGAAICMGKMIDSATEPPVAAFQKLCPR 213
Query: 211 ICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADAL 270
I KLL++ N++ KASLLPVVGSLSQVGAIAPQSLE LL SIHECLG T+W TRKAAAD L
Sbjct: 214 ISKLLNSPNYITKASLLPVVGSLSQVGAIAPQSLESLLHSIHECLGCTNWVTRKAAADVL 273
Query: 271 SALALHSSNLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQLWKKIAGKVDVGS-DDQK 329
+LA+HSS+LV D STLT LEACRFDKIKPVR+S++EAL +WK IAGK + G+ DDQK
Sbjct: 274 ISLAVHSSSLVADKTDSTLTALEACRFDKIKPVRESLSEALNVWKNIAGKGESGTMDDQK 333
Query: 330 SSPGGKAPEPGEDLKNLNPSDKRAELSAKGPLNGSSPASASLT-------KGKAGNISEK 382
+ S ++ L G + S A L + + K
Sbjct: 334 -----------------DVSSEQCILERNGETDSVSCEEAGLVMQGSCDGLSSSSDSISK 376
Query: 383 AVVILKKKAPALSDKELNPEFFQNL-SRGSGDLPVEVVVPRRCLNSSNSNNEEESDPSDL 441
AV+IL+KKAP L+ K+LNPEFFQ L RGSGD+PVEV++P R NSSNSN E+ESD +
Sbjct: 377 AVLILRKKAPRLTGKDLNPEFFQKLEKRGSGDMPVEVILPSRQKNSSNSNTEDESDANTS 436
Query: 442 DSKGRSN---RMGNSQTDDFSVSLNNKHRSIDRGTAGGNGKDPRMRAPDVERELSGNRAG 498
+ RSN R T + + +D GG + R+RA D G+
Sbjct: 437 VLRSRSNGLCRTAGVHTKQRHFGDFAREKWVDERMNGG---ESRLRAFD------GDHTE 487
Query: 499 FSKTDSQAEGSFINNKGNWLAIQRQLMQLERQQAHLMNMLQDFMGGSHDSMVTLENRVRG 558
+ D+ N+GNW +QRQL+ LERQQ H+MNMLQDFMGGSHD M++LENRVRG
Sbjct: 488 VIQADTS------ENRGNWPPLQRQLLHLERQQTHIMNMLQDFMGGSHDGMISLENRVRG 541
Query: 559 LERVVEDMARDLSISSGRRGSNFAMGFEGSNNRSLGKYNGFAEYSGTKYNGRTPFGERFA 618
LER+VE+M+R++SI SG RG A
Sbjct: 542 LERIVEEMSREMSIQSGARGKATA------------------------------------ 565
Query: 619 QSDGVAASTRGRGPSWRSDMSDAWDFTAYC-ASRNGQLGSRRAPGGGPVDSRSPKSEHDN 677
SWRSD+ D WD Y +SRN Q +R+ G GP +
Sbjct: 566 --------------SWRSDV-DGWDSPNYGPSSRNTQTSTRKIRGTGP-----------S 599
Query: 678 DQVGG-RRAWDKGTGPVRLGEGPSARSVWQASKDEATLEAIRVAGEDSGTSRSARVAIPE 736
+Q G RRAWDK + +RLGEGPSARSVWQASKDEATLEAIRVAGED GTSR+ RV+IPE
Sbjct: 600 EQSGNSRRAWDKSSVAIRLGEGPSARSVWQASKDEATLEAIRVAGEDCGTSRNRRVSIPE 659
Query: 737 LTAEAM---GDDNV-GQERDPIWTSWTNAMDAIQVGDLDTAYAEVVSTGDDFLLVKLMDR 792
AEAM DDN GQ+ DPIWT W+N++ A++VGD D+A+AEV+STGDD LLVKLMD+
Sbjct: 660 --AEAMMDEDDDNRGGQQGDPIWTCWSNSVHALRVGDTDSAFAEVLSTGDDHLLVKLMDK 717
Query: 793 SGPVVDQLSNEVANEVLHAIGQFLLEQNLFDICLSWIQQLVELVLENGPHVLGIPMELKK 852
+GPV+DQLS+++ NE +H+I QFLL+ L+DICLSWIQQL+E+ +ENG +GIP+ELKK
Sbjct: 718 TGPVLDQLSSDMGNEAIHSIAQFLLDHTLYDICLSWIQQLLEVSVENGADFMGIPLELKK 777
Query: 853 ELLLNLHEASTTMDPPEDWEGPAPDQLLLQLASAWEIELQQFD 895
ELLLNLHEA +T DPPEDWEG APD LL++LAS W IE+Q FD
Sbjct: 778 ELLLNLHEALSTTDPPEDWEGLAPDHLLVELASNWNIEIQHFD 820
>sp|Q9Y7K2|TOR2_SCHPO Phosphatidylinositol 3-kinase tor2 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=tor2 PE=1 SV=2
Length = 2337
Score = 36.6 bits (83), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 50/96 (52%), Gaps = 12/96 (12%)
Query: 96 KKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGK 155
K+E+ +LL L+ L +HV I+ ++ + KDS S + + +S+G + ++
Sbjct: 622 KEENAKLLCLLIAAAPRLIESHVEPILQILLPKAKDSSSIVAASIVNSLGEICQI----- 676
Query: 156 EENNGTVVGLFVKPL----FEAMMEQNKGVQSGAAM 187
+G V+ F+K L EA+ +Q+ ++ AA+
Sbjct: 677 ---SGEVIVPFIKDLMPLIIEALQDQSSPIRRAAAL 709
>sp|P50428|ARSA_MOUSE Arylsulfatase A OS=Mus musculus GN=Arsa PE=2 SV=2
Length = 506
Score = 35.4 bits (80), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
Query: 556 VRGLERVVEDMARDLSISSGRRGSNFAMGFEGSNNRSLGKYNGFAEYSGTKYNGRTPFGE 615
+ GLE +RDL + R+G F + + + Y F+ S TK +GR PFG+
Sbjct: 193 LPGLEARYVSFSRDLMADAQRQGRPFFLYYASHHTH----YPQFSGQSFTKRSGRGPFGD 248
Query: 616 RFAQSDGVAAS 626
+ DG +
Sbjct: 249 SLMELDGAVGA 259
>sp|Q54X82|AP1B_DICDI AP-1 complex subunit beta OS=Dictyostelium discoideum GN=ap1b1 PE=3
SV=1
Length = 942
Score = 34.3 bits (77), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 53/101 (52%), Gaps = 16/101 (15%)
Query: 168 KPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLL 227
+PL A+ +Q+ V+ AA+C+AK+ + +P +V Q + LL + N M A+
Sbjct: 124 EPLRHALKDQDPYVRKTAAVCVAKLYDV--NPELVENQGFLNILNDLLGDSNPMVVAN-- 179
Query: 228 PVVGSLSQVGAIAPQ--------SLEPLLQSIHECLGSTDW 260
V SL+++ ++ + +L LL +++EC T+W
Sbjct: 180 -AVASLTEIDEVSKKEVFRIHSGNLNKLLAALNEC---TEW 216
>sp|Q2JS78|OBG_SYNJA GTPase obg OS=Synechococcus sp. (strain JA-3-3Ab) GN=obg PE=3 SV=1
Length = 385
Score = 34.3 bits (77), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 24/41 (58%)
Query: 233 LSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSAL 273
+S + A+A Q LEPLLQ + +CLG R AAA + +
Sbjct: 305 VSAISAVARQGLEPLLQRVWQCLGRDPDLHRPAAASKIQPV 345
>sp|Q8L7A9|AP4E_ARATH AP-4 complex subunit epsilon OS=Arabidopsis thaliana GN=At1g31730
PE=1 SV=1
Length = 938
Score = 33.9 bits (76), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 49/92 (53%), Gaps = 4/92 (4%)
Query: 45 ILTSLSKLADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLA 104
I+ ++ K D + + L + +++E++P +L + E N K AV+K+++ L
Sbjct: 123 IVNTIQKDLRSDNYLVVCAALNAICRLINEETIPAVLPQVVELLNHQKEAVRKKAIMALH 182
Query: 105 LVCELHSELTSTHVTKIISHIVKRLKDSDSGM 136
H + S+ V+ ++S+ KRL D+D G+
Sbjct: 183 ---RFHRKSPSS-VSHLVSNFRKRLCDNDPGV 210
>sp|Q92973|TNPO1_HUMAN Transportin-1 OS=Homo sapiens GN=TNPO1 PE=1 SV=2
Length = 898
Score = 33.5 bits (75), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 84 LYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMK-EAC 140
L+ + D +P V+K R L ++ E+ + H+ I+ ++++R +D D + EAC
Sbjct: 228 LFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEAC 285
>sp|Q3SYU7|TNPO1_BOVIN Transportin-1 OS=Bos taurus GN=TNPO1 PE=2 SV=2
Length = 898
Score = 33.5 bits (75), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 84 LYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMK-EAC 140
L+ + D +P V+K R L ++ E+ + H+ I+ ++++R +D D + EAC
Sbjct: 228 LFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEAC 285
>sp|Q1LI20|RPOB_RALME DNA-directed RNA polymerase subunit beta OS=Ralstonia metallidurans
(strain CH34 / ATCC 43123 / DSM 2839) GN=rpoB PE=3 SV=1
Length = 1368
Score = 33.1 bits (74), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 47/82 (57%), Gaps = 3/82 (3%)
Query: 762 MDAIQVGDLDTAYAEVVSTGDDFLLVKLMDRSGPVVDQLSNEVANEVLHAIGQFLLEQNL 821
++A + DLD+A +++S +D+LL +++ ++ ++D + EV + + LLE NL
Sbjct: 273 INAKHIRDLDSAGTKLISVPEDYLLGRVLAKN--IIDPDTGEVIANANDELTETLLE-NL 329
Query: 822 FDICLSWIQQLVELVLENGPHV 843
+ + IQ L L+ GP++
Sbjct: 330 REAGVKDIQTLYTNDLDQGPYI 351
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.128 0.366
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 339,420,442
Number of Sequences: 539616
Number of extensions: 14868343
Number of successful extensions: 43076
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 101
Number of HSP's that attempted gapping in prelim test: 41989
Number of HSP's gapped (non-prelim): 1077
length of query: 896
length of database: 191,569,459
effective HSP length: 127
effective length of query: 769
effective length of database: 123,038,227
effective search space: 94616396563
effective search space used: 94616396563
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 66 (30.0 bits)