Query 002658
Match_columns 896
No_of_seqs 175 out of 417
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 04:28:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002658.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002658hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2023 Nuclear transport rece 100.0 3E-30 6.6E-35 293.3 15.3 256 57-318 371-647 (885)
2 KOG2171 Karyopherin (importin) 100.0 1.1E-27 2.4E-32 286.5 23.7 258 57-321 325-596 (1075)
3 KOG2023 Nuclear transport rece 99.9 1.7E-25 3.8E-30 254.8 16.9 265 41-318 11-284 (885)
4 KOG0213 Splicing factor 3b, su 99.5 5.7E-13 1.2E-17 154.6 20.3 214 57-278 732-957 (1172)
5 KOG1242 Protein containing ada 99.5 7.5E-13 1.6E-17 152.9 20.7 299 16-321 109-450 (569)
6 KOG1241 Karyopherin (importin) 99.5 5.5E-12 1.2E-16 147.6 23.3 277 35-311 314-758 (859)
7 KOG2171 Karyopherin (importin) 99.5 1.7E-11 3.7E-16 148.9 27.9 275 36-312 75-414 (1075)
8 COG5215 KAP95 Karyopherin (imp 99.2 1.2E-09 2.6E-14 125.1 24.1 259 40-298 321-735 (858)
9 PF12348 CLASP_N: CLASP N term 99.2 1.2E-09 2.5E-14 113.3 18.0 197 77-282 5-213 (228)
10 KOG1242 Protein containing ada 99.1 3.1E-09 6.6E-14 123.5 20.8 250 41-301 214-471 (569)
11 COG5181 HSH155 U2 snRNP splice 99.1 8.4E-10 1.8E-14 127.0 15.4 215 57-279 537-763 (975)
12 PRK09687 putative lyase; Provi 99.1 6.2E-09 1.3E-13 113.1 20.7 184 53-273 35-219 (280)
13 KOG1241 Karyopherin (importin) 99.1 7.9E-09 1.7E-13 121.7 20.6 263 44-320 2-289 (859)
14 PRK13800 putative oxidoreducta 98.9 8.6E-08 1.9E-12 118.9 24.4 240 32-312 609-895 (897)
15 PRK09687 putative lyase; Provi 98.9 2.4E-08 5.3E-13 108.6 17.0 194 76-313 24-218 (280)
16 PF01602 Adaptin_N: Adaptin N 98.9 4.7E-08 1E-12 112.4 17.8 243 53-318 54-332 (526)
17 PF01602 Adaptin_N: Adaptin N 98.8 1.3E-07 2.8E-12 108.9 18.5 219 53-292 91-348 (526)
18 KOG1059 Vesicle coat complex A 98.8 3.1E-07 6.7E-12 108.1 21.3 210 82-318 147-364 (877)
19 KOG0212 Uncharacterized conser 98.8 3.6E-07 7.8E-12 105.4 19.9 254 56-318 15-278 (675)
20 KOG0166 Karyopherin (importin) 98.8 1.5E-07 3.2E-12 109.0 16.9 253 40-301 109-382 (514)
21 KOG1824 TATA-binding protein-i 98.7 1.8E-06 3.9E-11 104.0 23.2 222 39-278 856-1098(1233)
22 KOG0212 Uncharacterized conser 98.7 1.9E-06 4.1E-11 99.6 22.0 278 37-320 118-407 (675)
23 KOG0915 Uncharacterized conser 98.6 5E-07 1.1E-11 112.7 16.5 226 60-292 940-1177(1702)
24 PRK13800 putative oxidoreducta 98.6 9.9E-07 2.1E-11 109.7 18.8 147 83-275 625-771 (897)
25 PF12755 Vac14_Fab1_bd: Vacuol 98.6 2.6E-07 5.6E-12 86.0 10.0 94 95-193 2-95 (97)
26 PF12348 CLASP_N: CLASP N term 98.6 1.3E-06 2.8E-11 90.7 16.4 174 53-235 19-206 (228)
27 PLN03200 cellulose synthase-in 98.6 4.4E-06 9.6E-11 109.2 23.7 256 52-318 415-725 (2102)
28 PF10508 Proteasom_PSMB: Prote 98.5 9.7E-06 2.1E-10 95.0 22.9 262 45-318 43-318 (503)
29 PLN03200 cellulose synthase-in 98.5 9.4E-06 2E-10 106.3 24.1 256 53-320 542-812 (2102)
30 PF13513 HEAT_EZ: HEAT-like re 98.5 1.1E-07 2.5E-12 78.2 3.7 55 93-147 1-55 (55)
31 KOG1824 TATA-binding protein-i 98.5 3.6E-05 7.8E-10 93.3 25.6 238 77-321 129-408 (1233)
32 PF12460 MMS19_C: RNAPII trans 98.4 2.6E-05 5.7E-10 89.1 23.0 224 37-294 186-413 (415)
33 COG5215 KAP95 Karyopherin (imp 98.4 3.6E-05 7.9E-10 89.3 23.5 272 35-312 89-391 (858)
34 KOG0166 Karyopherin (importin) 98.4 3.6E-06 7.8E-11 97.8 15.6 262 53-321 164-441 (514)
35 PF10508 Proteasom_PSMB: Prote 98.4 1.7E-05 3.8E-10 92.9 21.5 169 97-275 56-231 (503)
36 PTZ00429 beta-adaptin; Provisi 98.4 0.00011 2.3E-09 90.0 28.1 240 57-314 84-324 (746)
37 KOG1248 Uncharacterized conser 98.4 6.3E-05 1.4E-09 93.2 25.6 250 45-294 658-919 (1176)
38 KOG1820 Microtubule-associated 98.4 1.3E-05 2.7E-10 98.1 19.8 200 77-286 251-455 (815)
39 PF12755 Vac14_Fab1_bd: Vacuol 98.3 4.6E-06 1E-10 77.7 10.5 84 224-307 4-88 (97)
40 KOG2032 Uncharacterized conser 98.3 9.7E-05 2.1E-09 85.0 22.7 259 50-315 188-530 (533)
41 KOG0915 Uncharacterized conser 98.3 0.00013 2.8E-09 92.1 25.3 248 35-285 989-1317(1702)
42 PTZ00429 beta-adaptin; Provisi 98.2 0.00024 5.1E-09 87.1 24.7 251 55-320 119-434 (746)
43 KOG1240 Protein kinase contain 98.2 6E-05 1.3E-09 93.2 18.2 229 33-286 415-662 (1431)
44 KOG0213 Splicing factor 3b, su 98.1 0.00026 5.7E-09 84.3 21.9 206 53-278 853-1068(1172)
45 KOG2956 CLIP-associating prote 98.1 0.00017 3.7E-09 82.7 19.1 202 77-288 285-491 (516)
46 KOG1248 Uncharacterized conser 98.0 0.0017 3.7E-08 81.0 27.9 243 60-306 632-888 (1176)
47 PF05004 IFRD: Interferon-rela 98.0 0.00068 1.5E-08 75.2 22.3 202 90-293 54-279 (309)
48 cd00020 ARM Armadillo/beta-cat 98.0 1.4E-05 3.1E-10 72.8 6.7 111 76-194 8-120 (120)
49 PF12717 Cnd1: non-SMC mitotic 97.9 0.00038 8.3E-09 70.9 16.5 93 92-195 1-93 (178)
50 cd00020 ARM Armadillo/beta-cat 97.9 3E-05 6.4E-10 70.8 7.6 109 166-274 8-119 (120)
51 KOG2933 Uncharacterized conser 97.9 0.00017 3.7E-09 79.3 13.7 174 77-264 86-266 (334)
52 PF13646 HEAT_2: HEAT repeats; 97.8 0.00012 2.6E-09 64.5 9.8 78 89-190 10-88 (88)
53 COG5181 HSH155 U2 snRNP splice 97.8 0.0011 2.5E-08 77.8 20.0 273 45-320 606-916 (975)
54 COG1413 FOG: HEAT repeat [Ener 97.8 0.002 4.4E-08 70.8 20.7 154 81-277 45-211 (335)
55 KOG1991 Nuclear transport rece 97.8 0.0046 1E-07 76.2 25.0 181 65-253 396-592 (1010)
56 COG1413 FOG: HEAT repeat [Ener 97.8 0.0019 4E-08 71.1 19.8 182 55-284 57-252 (335)
57 COG5064 SRP1 Karyopherin (impo 97.8 8.8E-05 1.9E-09 82.2 9.2 214 76-301 158-387 (526)
58 KOG0211 Protein phosphatase 2A 97.8 0.0018 3.9E-08 79.3 21.2 229 76-317 434-665 (759)
59 KOG4653 Uncharacterized conser 97.6 0.0051 1.1E-07 74.9 22.1 221 88-321 736-969 (982)
60 KOG2956 CLIP-associating prote 97.6 0.0015 3.2E-08 75.2 16.2 195 45-250 288-494 (516)
61 KOG1240 Protein kinase contain 97.6 0.007 1.5E-07 75.8 23.0 258 53-320 474-790 (1431)
62 PF13251 DUF4042: Domain of un 97.6 0.00081 1.8E-08 69.6 13.0 142 95-237 2-176 (182)
63 KOG1967 DNA repair/transcripti 97.5 0.002 4.3E-08 78.7 16.8 248 64-318 753-1026(1030)
64 TIGR02270 conserved hypothetic 97.5 0.0014 3.1E-08 75.5 14.5 151 119-313 53-204 (410)
65 KOG4224 Armadillo repeat prote 97.5 0.0014 3.1E-08 73.5 13.5 227 45-278 212-449 (550)
66 PF13646 HEAT_2: HEAT repeats; 97.5 0.00057 1.2E-08 60.2 8.4 86 122-231 1-88 (88)
67 TIGR02270 conserved hypothetic 97.5 0.0051 1.1E-07 71.0 18.3 163 65-275 45-207 (410)
68 PF12719 Cnd3: Nuclear condens 97.4 0.053 1.2E-06 59.6 24.8 133 60-196 6-145 (298)
69 KOG2274 Predicted importin 9 [ 97.4 0.015 3.3E-07 71.3 21.6 239 41-290 2-274 (1005)
70 COG5240 SEC21 Vesicle coat com 97.4 0.016 3.4E-07 68.3 20.8 239 60-315 283-554 (898)
71 PF05004 IFRD: Interferon-rela 97.4 0.022 4.9E-07 63.4 21.3 199 118-319 41-260 (309)
72 PF12717 Cnd1: non-SMC mitotic 97.4 0.0096 2.1E-07 60.7 16.9 110 56-176 3-112 (178)
73 KOG0211 Protein phosphatase 2A 97.3 0.0084 1.8E-07 73.7 19.2 253 43-306 158-417 (759)
74 KOG2022 Nuclear transport rece 97.3 0.015 3.3E-07 71.2 20.6 176 72-254 455-640 (982)
75 PF14500 MMS19_N: Dos2-interac 97.3 0.11 2.4E-06 56.8 24.7 229 53-293 11-256 (262)
76 KOG4224 Armadillo repeat prote 97.3 0.0053 1.1E-07 69.0 14.6 258 47-314 173-444 (550)
77 PF04826 Arm_2: Armadillo-like 97.2 0.0096 2.1E-07 64.7 16.0 191 72-278 9-208 (254)
78 KOG1967 DNA repair/transcripti 97.2 0.0026 5.6E-08 77.8 12.2 213 53-271 786-1020(1030)
79 PF12460 MMS19_C: RNAPII trans 97.2 0.11 2.4E-06 59.8 25.1 249 55-313 111-391 (415)
80 KOG1020 Sister chromatid cohes 97.1 0.023 5.1E-07 72.7 19.5 151 53-217 792-942 (1692)
81 KOG1060 Vesicle coat complex A 97.0 0.17 3.6E-06 61.9 24.6 229 38-279 141-425 (968)
82 KOG1062 Vesicle coat complex A 97.0 0.02 4.4E-07 69.5 17.2 105 77-195 105-209 (866)
83 PF13513 HEAT_EZ: HEAT-like re 97.0 0.0014 3E-08 53.9 5.1 53 260-312 1-53 (55)
84 KOG1820 Microtubule-associated 96.9 0.03 6.4E-07 69.5 18.4 192 117-317 250-444 (815)
85 KOG1943 Beta-tubulin folding c 96.9 0.089 1.9E-06 65.9 22.1 264 39-313 538-878 (1133)
86 PF03378 CAS_CSE1: CAS/CSE pro 96.9 0.04 8.6E-07 64.2 18.5 203 90-295 41-250 (435)
87 KOG2259 Uncharacterized conser 96.9 0.018 3.9E-07 68.8 15.4 219 81-312 200-471 (823)
88 PF10274 ParcG: Parkin co-regu 96.9 0.011 2.4E-07 61.3 11.9 117 204-320 36-168 (183)
89 PF02985 HEAT: HEAT repeat; I 96.8 0.0013 2.8E-08 48.7 3.7 31 121-151 1-31 (31)
90 KOG1062 Vesicle coat complex A 96.8 0.14 3E-06 62.7 21.9 228 57-295 123-397 (866)
91 COG5096 Vesicle coat complex, 96.8 0.17 3.7E-06 62.3 22.9 156 40-213 55-211 (757)
92 KOG1993 Nuclear transport rece 96.7 0.097 2.1E-06 63.9 19.4 253 58-320 414-689 (978)
93 KOG1943 Beta-tubulin folding c 96.7 0.1 2.2E-06 65.4 19.7 234 37-293 334-592 (1133)
94 COG5064 SRP1 Karyopherin (impo 96.6 0.027 5.8E-07 63.1 13.2 260 53-320 169-447 (526)
95 KOG1060 Vesicle coat complex A 96.6 0.13 2.8E-06 62.9 19.6 209 81-314 110-348 (968)
96 COG5656 SXM1 Importin, protein 96.5 0.33 7.2E-06 59.2 21.8 168 76-253 405-587 (970)
97 KOG1061 Vesicle coat complex A 96.4 0.12 2.5E-06 63.1 18.0 220 31-278 8-231 (734)
98 PF02985 HEAT: HEAT repeat; I 96.4 0.0059 1.3E-07 45.3 4.5 30 247-276 1-30 (31)
99 PF10274 ParcG: Parkin co-regu 96.4 0.027 5.8E-07 58.6 10.6 116 163-278 36-167 (183)
100 COG5096 Vesicle coat complex, 96.3 0.08 1.7E-06 65.1 16.2 152 65-233 40-193 (757)
101 KOG4653 Uncharacterized conser 96.3 0.4 8.6E-06 59.3 21.2 223 45-278 729-967 (982)
102 PF08167 RIX1: rRNA processing 96.3 0.11 2.4E-06 52.7 14.4 136 76-213 22-162 (165)
103 PF04826 Arm_2: Armadillo-like 96.3 0.075 1.6E-06 57.9 14.0 184 38-233 11-200 (254)
104 KOG0414 Chromosome condensatio 96.2 0.051 1.1E-06 68.5 13.5 168 140-321 893-1066(1251)
105 KOG2274 Predicted importin 9 [ 96.1 1.2 2.5E-05 55.6 23.8 215 77-299 488-719 (1005)
106 KOG0567 HEAT repeat-containing 96.0 0.088 1.9E-06 57.5 12.8 201 76-315 68-279 (289)
107 COG5240 SEC21 Vesicle coat com 95.9 0.35 7.7E-06 57.5 18.1 203 77-300 262-467 (898)
108 PF11865 DUF3385: Domain of un 95.9 0.06 1.3E-06 54.5 10.7 141 77-234 8-156 (160)
109 PF12530 DUF3730: Protein of u 95.9 1.1 2.3E-05 48.1 20.4 194 49-259 9-216 (234)
110 cd08050 TAF6 TATA Binding Prot 95.9 0.071 1.5E-06 60.3 12.0 133 162-303 175-325 (343)
111 KOG1991 Nuclear transport rece 95.9 0.85 1.8E-05 57.2 21.6 224 42-278 3-275 (1010)
112 KOG1058 Vesicle coat complex C 95.7 1 2.2E-05 55.2 21.2 198 74-279 129-392 (948)
113 KOG1078 Vesicle coat complex C 95.7 0.39 8.5E-06 58.8 17.5 65 247-315 467-531 (865)
114 KOG0803 Predicted E3 ubiquitin 95.6 0.85 1.8E-05 59.5 21.4 215 39-259 37-289 (1312)
115 PF13251 DUF4042: Domain of un 95.6 0.18 3.8E-06 52.5 12.9 141 135-278 1-177 (182)
116 PF10363 DUF2435: Protein of u 95.6 0.098 2.1E-06 48.7 9.8 79 85-175 9-87 (92)
117 KOG2025 Chromosome condensatio 95.6 1.1 2.4E-05 54.7 20.6 197 62-272 63-291 (892)
118 PF08167 RIX1: rRNA processing 95.6 0.28 6E-06 49.9 13.8 137 114-255 19-164 (165)
119 smart00638 LPD_N Lipoprotein N 95.6 0.49 1.1E-05 56.5 18.0 165 77-267 395-570 (574)
120 KOG1059 Vesicle coat complex A 95.5 2.3 5E-05 52.1 23.0 243 39-302 251-512 (877)
121 PF08569 Mo25: Mo25-like; Int 95.5 1.8 3.9E-05 49.1 21.3 212 82-299 79-313 (335)
122 KOG2032 Uncharacterized conser 95.5 0.58 1.3E-05 55.0 17.4 57 77-133 256-312 (533)
123 KOG2025 Chromosome condensatio 95.5 2.4 5.2E-05 51.9 22.8 200 99-315 62-290 (892)
124 KOG2022 Nuclear transport rece 95.4 6 0.00013 49.7 26.2 265 41-320 505-827 (982)
125 KOG1992 Nuclear export recepto 95.4 0.63 1.4E-05 57.4 17.9 256 53-318 373-667 (960)
126 smart00802 UME Domain in UVSB 95.3 0.14 2.9E-06 49.1 10.0 73 77-151 9-85 (107)
127 PF12231 Rif1_N: Rap1-interact 95.3 7 0.00015 44.8 25.4 188 95-311 150-347 (372)
128 KOG1020 Sister chromatid cohes 95.3 0.49 1.1E-05 61.4 17.3 168 135-315 792-960 (1692)
129 PF08064 UME: UME (NUC010) dom 95.3 0.17 3.7E-06 48.0 10.4 73 77-151 9-85 (107)
130 KOG2137 Protein kinase [Signal 95.2 0.93 2E-05 55.3 18.4 140 114-263 343-484 (700)
131 COG5095 TAF6 Transcription ini 95.1 0.25 5.3E-06 55.0 12.3 127 163-298 195-339 (450)
132 KOG2549 Transcription initiati 95.0 0.51 1.1E-05 56.0 15.3 130 163-301 205-353 (576)
133 KOG2259 Uncharacterized conser 95.0 0.61 1.3E-05 56.4 16.0 186 116-314 193-437 (823)
134 PF01347 Vitellogenin_N: Lipop 95.0 2.2 4.8E-05 51.2 21.3 193 62-284 349-562 (618)
135 PF08767 CRM1_C: CRM1 C termin 94.9 2.7 5.9E-05 47.2 20.2 189 37-235 39-247 (319)
136 KOG1078 Vesicle coat complex C 94.8 0.82 1.8E-05 56.2 16.6 203 77-301 243-447 (865)
137 PF05918 API5: Apoptosis inhib 94.7 8.5 0.00018 46.6 24.7 97 48-149 28-125 (556)
138 PF12074 DUF3554: Domain of un 94.7 2.8 6.1E-05 46.9 19.8 192 77-281 24-241 (339)
139 KOG4413 26S proteasome regulat 94.7 6.3 0.00014 44.8 21.8 114 37-150 31-158 (524)
140 PF05536 Neurochondrin: Neuroc 94.6 6.4 0.00014 47.6 23.6 194 79-279 53-265 (543)
141 KOG0392 SNF2 family DNA-depend 94.6 1.4 3E-05 56.7 18.3 175 137-321 750-930 (1549)
142 smart00638 LPD_N Lipoprotein N 94.6 5.1 0.00011 48.0 22.8 219 59-311 310-540 (574)
143 PF08389 Xpo1: Exportin 1-like 94.6 0.14 3.1E-06 49.0 8.1 125 134-270 2-148 (148)
144 KOG1992 Nuclear export recepto 94.5 8.4 0.00018 48.1 24.1 243 53-301 510-778 (960)
145 PF10350 DUF2428: Putative dea 94.5 0.86 1.9E-05 49.5 14.7 169 93-261 61-255 (255)
146 KOG2933 Uncharacterized conser 94.5 0.66 1.4E-05 51.9 13.7 148 166-318 130-279 (334)
147 KOG0392 SNF2 family DNA-depend 94.5 0.71 1.5E-05 59.1 15.4 176 57-237 145-327 (1549)
148 KOG1993 Nuclear transport rece 94.2 6.7 0.00015 48.8 22.2 212 39-257 521-751 (978)
149 PF10521 DUF2454: Protein of u 94.2 1.7 3.7E-05 47.8 16.3 136 159-294 113-272 (282)
150 KOG2149 Uncharacterized conser 94.1 0.53 1.1E-05 54.1 12.4 135 80-217 59-193 (393)
151 KOG2160 Armadillo/beta-catenin 94.0 2.1 4.5E-05 48.7 16.7 175 45-234 86-281 (342)
152 KOG2081 Nuclear transport regu 94.0 1.4 2.9E-05 52.7 15.8 165 38-215 334-519 (559)
153 PF12719 Cnd3: Nuclear condens 93.9 6.9 0.00015 43.2 20.5 131 99-237 3-145 (298)
154 PF12054 DUF3535: Domain of un 93.9 2.7 5.7E-05 49.5 18.0 222 57-282 103-431 (441)
155 PF04118 Dopey_N: Dopey, N-ter 93.9 1.8 4E-05 48.5 15.9 212 39-261 53-286 (307)
156 PF10521 DUF2454: Protein of u 93.7 1.8 3.9E-05 47.6 15.4 158 101-259 98-278 (282)
157 PF03224 V-ATPase_H_N: V-ATPas 93.6 1.2 2.5E-05 49.5 13.8 216 78-305 58-303 (312)
158 KOG4535 HEAT and armadillo rep 93.5 2.8 6.1E-05 49.5 16.8 270 29-305 95-451 (728)
159 KOG1949 Uncharacterized conser 93.5 2.7 5.8E-05 51.5 17.0 156 77-237 172-333 (1005)
160 KOG2160 Armadillo/beta-catenin 93.4 6.2 0.00013 45.0 19.0 179 93-278 51-243 (342)
161 KOG2137 Protein kinase [Signal 93.2 4.3 9.4E-05 49.8 18.5 172 38-218 347-520 (700)
162 KOG2842 Interferon-related pro 93.1 4 8.7E-05 47.0 17.0 209 91-301 72-303 (427)
163 KOG2021 Nuclear mRNA export fa 93.0 17 0.00036 45.3 22.7 214 44-276 7-261 (980)
164 KOG1525 Sister chromatid cohes 93.0 23 0.00049 46.9 25.4 270 20-306 4-319 (1266)
165 KOG4535 HEAT and armadillo rep 93.0 0.93 2E-05 53.3 11.9 204 88-291 400-621 (728)
166 PF08506 Cse1: Cse1; InterPro 92.9 0.26 5.6E-06 56.4 7.5 130 53-189 222-370 (370)
167 KOG2021 Nuclear mRNA export fa 92.8 8 0.00017 47.9 19.7 195 89-294 450-745 (980)
168 PLN03076 ARF guanine nucleotid 92.8 13 0.00029 50.6 23.6 247 64-311 1071-1371(1780)
169 PF08064 UME: UME (NUC010) dom 92.7 1.1 2.4E-05 42.6 10.3 86 206-293 11-102 (107)
170 cd00256 VATPase_H VATPase_H, r 92.7 26 0.00057 41.3 23.5 168 39-217 52-239 (429)
171 cd08050 TAF6 TATA Binding Prot 92.6 2.9 6.3E-05 47.5 15.3 155 76-237 175-339 (343)
172 KOG1517 Guanine nucleotide bin 92.4 3.3 7.1E-05 52.7 16.2 141 135-278 572-735 (1387)
173 PF14225 MOR2-PAG1_C: Cell mor 92.3 21 0.00045 39.4 21.0 185 118-320 62-255 (262)
174 PF13001 Ecm29: Proteasome sta 92.3 6.3 0.00014 47.0 18.2 201 34-281 213-449 (501)
175 KOG1822 Uncharacterized conser 92.3 11 0.00023 51.0 21.0 242 47-293 919-1208(2067)
176 KOG1243 Protein kinase [Genera 92.3 0.23 5E-06 60.2 6.2 217 48-278 298-518 (690)
177 KOG0168 Putative ubiquitin fus 92.3 2.3 4.9E-05 53.0 14.4 170 53-233 224-411 (1051)
178 PF08389 Xpo1: Exportin 1-like 92.2 0.33 7.1E-06 46.6 6.2 120 61-189 8-148 (148)
179 KOG2062 26S proteasome regulat 92.2 1.6 3.5E-05 53.5 13.0 154 77-257 520-676 (929)
180 KOG1061 Vesicle coat complex A 92.1 3 6.4E-05 51.4 15.2 73 243-323 347-419 (734)
181 PF14664 RICTOR_N: Rapamycin-i 92.1 25 0.00054 40.7 22.1 213 53-278 37-272 (371)
182 PF03378 CAS_CSE1: CAS/CSE pro 91.5 23 0.0005 41.7 21.3 241 38-285 24-283 (435)
183 PF08767 CRM1_C: CRM1 C termin 91.4 29 0.00063 39.1 22.7 142 53-195 88-248 (319)
184 PF05804 KAP: Kinesin-associat 91.2 13 0.00027 46.5 19.6 147 161-314 486-647 (708)
185 PF03224 V-ATPase_H_N: V-ATPas 91.2 1.8 3.9E-05 48.0 11.4 184 41-234 56-268 (312)
186 KOG0168 Putative ubiquitin fus 91.1 22 0.00048 44.9 20.8 222 53-282 180-420 (1051)
187 PF12765 Cohesin_HEAT: HEAT re 90.7 0.31 6.7E-06 39.0 3.6 41 102-144 2-42 (42)
188 KOG1837 Uncharacterized conser 90.7 9.8 0.00021 50.4 18.3 222 57-284 1365-1620(1621)
189 PF01603 B56: Protein phosphat 90.6 26 0.00056 40.9 20.5 107 176-283 266-378 (409)
190 PF12530 DUF3730: Protein of u 90.6 28 0.0006 37.4 20.8 186 89-298 11-214 (234)
191 KOG0413 Uncharacterized conser 90.4 2.6 5.7E-05 53.0 12.5 126 57-195 947-1074(1529)
192 KOG1243 Protein kinase [Genera 90.4 2.5 5.4E-05 51.7 12.2 188 115-315 325-514 (690)
193 PF08506 Cse1: Cse1; InterPro 90.3 11 0.00024 43.4 17.0 165 99-270 162-370 (370)
194 KOG1077 Vesicle coat complex A 90.2 59 0.0013 40.6 27.1 158 25-194 267-433 (938)
195 COG5656 SXM1 Importin, protein 90.2 48 0.0011 41.5 22.4 198 88-294 308-549 (970)
196 KOG1822 Uncharacterized conser 89.8 31 0.00068 46.8 21.8 193 81-278 878-1091(2067)
197 PF12397 U3snoRNP10: U3 small 89.6 4.2 9E-05 38.9 11.0 72 116-196 2-76 (121)
198 PF08623 TIP120: TATA-binding 89.6 1.8 4E-05 44.7 9.0 98 113-217 2-117 (169)
199 smart00802 UME Domain in UVSB 89.5 2.6 5.7E-05 40.4 9.4 89 203-293 8-102 (107)
200 KOG1517 Guanine nucleotide bin 89.4 9.1 0.0002 49.0 16.1 144 39-196 526-673 (1387)
201 PF05804 KAP: Kinesin-associat 89.3 7.8 0.00017 48.2 15.6 118 98-221 268-387 (708)
202 COG5218 YCG1 Chromosome conden 88.8 29 0.00063 42.4 18.9 177 85-270 17-194 (885)
203 PF01603 B56: Protein phosphat 88.6 55 0.0012 38.2 24.5 217 90-316 101-323 (409)
204 KOG2549 Transcription initiati 88.6 22 0.00049 42.9 17.9 189 77-272 205-419 (576)
205 PF01347 Vitellogenin_N: Lipop 88.6 7.3 0.00016 46.9 14.6 168 96-284 342-529 (618)
206 KOG0891 DNA-dependent protein 88.6 9.1 0.0002 53.1 16.6 265 41-318 94-371 (2341)
207 PF11864 DUF3384: Domain of un 88.4 56 0.0012 38.6 21.4 217 57-279 6-249 (464)
208 KOG4413 26S proteasome regulat 88.1 30 0.00066 39.6 17.6 178 93-278 54-246 (524)
209 KOG1077 Vesicle coat complex A 88.0 52 0.0011 41.1 20.5 217 90-320 159-399 (938)
210 COG5095 TAF6 Transcription ini 87.9 49 0.0011 37.6 18.9 80 113-196 270-361 (450)
211 KOG1949 Uncharacterized conser 87.9 3.3 7.2E-05 50.8 10.7 151 123-275 177-331 (1005)
212 KOG2062 26S proteasome regulat 87.8 4.2 9E-05 50.2 11.6 189 90-301 460-679 (929)
213 PF10363 DUF2435: Protein of u 87.8 3.1 6.8E-05 38.8 8.5 73 44-116 4-80 (92)
214 KOG0889 Histone acetyltransfer 87.4 21 0.00047 50.8 18.8 254 53-306 996-1296(3550)
215 KOG0414 Chromosome condensatio 86.9 1.2E+02 0.0026 40.0 25.9 193 34-234 230-427 (1251)
216 COG5116 RPN2 26S proteasome re 86.4 5.1 0.00011 48.2 11.0 154 124-301 520-676 (926)
217 PF12231 Rif1_N: Rap1-interact 86.3 69 0.0015 36.8 23.0 254 53-319 5-303 (372)
218 COG5116 RPN2 26S proteasome re 86.2 9.1 0.0002 46.2 12.8 114 88-220 561-676 (926)
219 PF11865 DUF3385: Domain of un 85.8 6.1 0.00013 40.2 10.1 145 119-277 9-159 (160)
220 PF14500 MMS19_N: Dos2-interac 85.4 24 0.00051 38.9 15.0 147 171-322 5-156 (262)
221 PLN03076 ARF guanine nucleotid 85.3 1.7E+02 0.0038 40.5 27.6 225 90-318 1194-1488(1780)
222 PF11919 DUF3437: Domain of un 85.3 1.4 2.9E-05 41.2 4.6 55 94-149 4-58 (90)
223 KOG0567 HEAT repeat-containing 85.1 5.9 0.00013 43.8 10.0 63 74-148 217-279 (289)
224 KOG1048 Neural adherens juncti 84.9 28 0.00061 43.4 16.7 261 37-314 386-683 (717)
225 KOG1293 Proteins containing ar 84.8 20 0.00043 44.0 15.0 152 117-275 376-533 (678)
226 KOG1293 Proteins containing ar 84.7 59 0.0013 40.2 18.8 146 44-196 380-535 (678)
227 PF12830 Nipped-B_C: Sister ch 84.6 37 0.00081 35.2 15.4 71 77-151 6-76 (187)
228 COG5101 CRM1 Importin beta-rel 84.6 13 0.00027 45.6 13.0 117 114-235 523-648 (1053)
229 PF00514 Arm: Armadillo/beta-c 84.3 1.5 3.2E-05 34.2 3.8 29 121-149 13-41 (41)
230 KOG1058 Vesicle coat complex C 83.1 47 0.001 41.6 17.2 176 37-221 276-452 (948)
231 KOG4524 Uncharacterized conser 83.0 98 0.0021 39.9 20.2 213 99-318 568-875 (1014)
232 PF05327 RRN3: RNA polymerase 82.6 31 0.00067 41.9 15.8 144 58-214 53-213 (563)
233 cd00197 VHS_ENTH_ANTH VHS, ENT 82.1 13 0.00028 35.2 10.0 75 241-315 32-114 (115)
234 KOG0413 Uncharacterized conser 81.9 32 0.00068 44.1 15.3 147 93-254 945-1094(1529)
235 PF08623 TIP120: TATA-binding 80.8 12 0.00026 38.8 9.9 95 56-151 42-149 (169)
236 KOG3961 Uncharacterized conser 80.6 13 0.00029 40.1 10.3 111 206-319 114-242 (262)
237 PF04510 DUF577: Family of unk 80.5 52 0.0011 34.5 14.2 92 39-134 2-98 (174)
238 PF08569 Mo25: Mo25-like; Int 80.4 1.2E+02 0.0025 34.9 19.4 253 38-318 12-282 (335)
239 PF12074 DUF3554: Domain of un 80.4 1.1E+02 0.0023 34.5 20.6 209 41-255 19-253 (339)
240 PF05536 Neurochondrin: Neuroc 79.3 1.5E+02 0.0032 36.1 19.9 180 135-320 72-265 (543)
241 KOG1525 Sister chromatid cohes 79.1 67 0.0014 42.8 17.8 206 57-276 201-406 (1266)
242 COG5098 Chromosome condensatio 79.1 10 0.00022 46.7 9.8 144 163-320 890-1038(1128)
243 KOG3961 Uncharacterized conser 76.5 7.1 0.00015 42.1 6.8 92 163-254 112-207 (262)
244 COG5218 YCG1 Chromosome conden 76.3 27 0.00058 42.6 12.1 117 202-320 45-165 (885)
245 PF11698 V-ATPase_H_C: V-ATPas 75.8 5.8 0.00013 38.9 5.6 69 38-108 41-115 (119)
246 PF11698 V-ATPase_H_C: V-ATPas 75.4 6.8 0.00015 38.5 6.0 70 120-194 43-115 (119)
247 COG5098 Chromosome condensatio 75.0 1.8E+02 0.004 36.6 18.5 104 207-311 300-410 (1128)
248 KOG1837 Uncharacterized conser 74.5 18 0.00039 48.1 10.9 98 53-151 1516-1613(1621)
249 KOG2149 Uncharacterized conser 74.3 44 0.00096 39.0 12.9 136 164-299 57-198 (393)
250 PF14868 DUF4487: Domain of un 73.4 1.9E+02 0.0041 35.6 18.5 76 203-278 476-555 (559)
251 PF13001 Ecm29: Proteasome sta 72.8 98 0.0021 37.1 15.9 153 77-234 317-487 (501)
252 PF12333 Ipi1_N: Rix1 complex 72.3 19 0.0004 34.1 8.0 63 112-177 3-65 (102)
253 PF12830 Nipped-B_C: Sister ch 72.2 34 0.00074 35.5 10.6 78 203-283 5-82 (187)
254 cd05394 RasGAP_RASA2 RASA2 (or 72.1 78 0.0017 36.1 14.0 59 110-175 47-107 (313)
255 PF12333 Ipi1_N: Rix1 complex 71.9 9.3 0.0002 36.1 5.8 57 76-132 8-65 (102)
256 PF12054 DUF3535: Domain of un 71.8 82 0.0018 37.3 14.8 96 135-237 102-210 (441)
257 KOG0946 ER-Golgi vesicle-tethe 71.2 1.5E+02 0.0032 37.8 16.8 220 50-274 72-345 (970)
258 PF00514 Arm: Armadillo/beta-c 70.3 8.3 0.00018 29.9 4.3 28 247-274 13-40 (41)
259 PF10350 DUF2428: Putative dea 69.5 1.3E+02 0.0028 32.8 14.8 131 161-291 92-244 (255)
260 PF05918 API5: Apoptosis inhib 68.6 24 0.00053 42.9 9.7 55 220-277 36-90 (556)
261 KOG2081 Nuclear transport regu 68.3 2.5E+02 0.0054 34.4 17.5 161 114-290 334-510 (559)
262 PF02854 MIF4G: MIF4G domain; 67.4 1.3E+02 0.0027 30.1 13.3 83 43-127 2-85 (209)
263 KOG0891 DNA-dependent protein 67.3 1.8E+02 0.0038 41.4 18.1 199 121-320 6-208 (2341)
264 KOG0889 Histone acetyltransfer 67.3 6E+02 0.013 37.8 22.7 72 136-208 1249-1320(3550)
265 KOG4524 Uncharacterized conser 66.7 47 0.001 42.6 11.7 101 117-218 800-901 (1014)
266 PF07571 DUF1546: Protein of u 66.7 27 0.00058 32.5 7.6 63 90-152 17-81 (92)
267 PF04003 Utp12: Dip2/Utp12 Fam 65.7 28 0.0006 32.5 7.7 88 62-149 15-105 (110)
268 COG5234 CIN1 Beta-tubulin fold 65.5 1.7E+02 0.0036 36.9 15.5 242 53-315 474-757 (993)
269 KOG4199 Uncharacterized conser 65.0 2.1E+02 0.0046 33.3 15.4 173 53-233 254-442 (461)
270 PF11701 UNC45-central: Myosin 63.6 79 0.0017 32.0 11.0 130 74-217 2-139 (157)
271 smart00185 ARM Armadillo/beta- 63.5 12 0.00025 28.1 3.9 28 247-274 13-40 (41)
272 cd05134 RasGAP_RASA3 RASA3 (or 62.4 1E+02 0.0022 35.1 12.5 57 112-175 49-107 (310)
273 PF11701 UNC45-central: Myosin 62.4 65 0.0014 32.6 10.1 131 170-307 8-150 (157)
274 PF04118 Dopey_N: Dopey, N-ter 62.1 2.8E+02 0.0061 31.5 15.9 136 183-318 29-169 (307)
275 PF04510 DUF577: Family of unk 62.1 64 0.0014 33.8 10.0 130 119-255 2-139 (174)
276 cd03572 ENTH_epsin_related ENT 61.6 63 0.0014 32.0 9.4 90 57-148 17-118 (122)
277 PF12612 TFCD_C: Tubulin foldi 61.4 1.6E+02 0.0035 30.6 13.1 132 163-299 5-164 (193)
278 KOG2141 Protein involved in hi 61.0 4.4E+02 0.0096 33.4 19.3 53 31-84 309-361 (822)
279 PF08161 NUC173: NUC173 domain 60.8 88 0.0019 33.2 11.1 132 174-323 9-161 (198)
280 PF14631 FancD2: Fanconi anaem 60.7 6E+02 0.013 34.9 22.4 208 75-298 431-645 (1426)
281 KOG3678 SARM protein (with ste 60.5 1.6E+02 0.0036 35.4 13.8 178 92-284 277-461 (832)
282 smart00185 ARM Armadillo/beta- 59.8 12 0.00026 28.1 3.3 28 121-148 13-40 (41)
283 cd05135 RasGAP_RASAL Ras GTPas 59.6 3.2E+02 0.007 31.4 16.7 71 96-174 38-110 (333)
284 PF12397 U3snoRNP10: U3 small 58.9 49 0.0011 31.6 8.1 74 202-277 2-76 (121)
285 PF11935 DUF3453: Domain of un 57.8 2.8E+02 0.006 30.1 18.6 182 89-293 3-210 (239)
286 PF06685 DUF1186: Protein of u 57.7 3E+02 0.0065 30.5 16.1 162 59-256 16-195 (249)
287 KOG4541 Nuclear transport rece 57.1 1.4E+02 0.0031 36.5 12.8 135 93-233 571-713 (748)
288 PF12612 TFCD_C: Tubulin foldi 56.7 1E+02 0.0022 32.2 10.6 136 93-237 21-160 (193)
289 PF14631 FancD2: Fanconi anaem 56.5 1.4E+02 0.0031 40.5 14.3 155 102-265 417-573 (1426)
290 cd03572 ENTH_epsin_related ENT 56.0 1.4E+02 0.003 29.6 10.8 71 243-313 35-116 (122)
291 COG5657 CSE1 CAS/CSE protein i 55.1 6E+02 0.013 33.1 21.0 138 49-197 12-155 (947)
292 KOG0946 ER-Golgi vesicle-tethe 54.9 4.1E+02 0.0089 34.1 16.5 175 118-299 20-225 (970)
293 PF14664 RICTOR_N: Rapamycin-i 54.1 2.5E+02 0.0054 32.6 14.2 148 161-318 21-178 (371)
294 PF12783 Sec7_N: Guanine nucle 53.4 1.1E+02 0.0023 30.9 9.9 94 56-149 37-146 (168)
295 KOG2973 Uncharacterized conser 52.8 55 0.0012 37.3 8.2 66 83-151 7-73 (353)
296 cd03568 VHS_STAM VHS domain fa 52.2 59 0.0013 32.7 7.7 73 163-235 35-110 (144)
297 PF00790 VHS: VHS domain; Int 51.6 80 0.0017 31.2 8.5 78 241-318 37-120 (140)
298 PRK14707 hypothetical protein; 51.6 9.7E+02 0.021 34.5 21.0 160 46-215 547-718 (2710)
299 PF06685 DUF1186: Protein of u 51.4 3.8E+02 0.0082 29.7 15.3 69 108-181 91-169 (249)
300 PF09324 DUF1981: Domain of un 51.3 98 0.0021 28.4 8.4 67 245-311 16-83 (86)
301 cd03561 VHS VHS domain family; 50.9 1.1E+02 0.0024 30.0 9.3 76 242-318 33-114 (133)
302 cd05391 RasGAP_p120GAP p120GAP 50.5 4.3E+02 0.0094 30.1 16.6 55 114-175 46-102 (315)
303 PF14225 MOR2-PAG1_C: Cell mor 50.2 4E+02 0.0086 29.6 17.1 164 57-232 78-254 (262)
304 PF01417 ENTH: ENTH domain; I 49.8 2.5E+02 0.0054 27.1 11.9 101 210-314 7-119 (125)
305 PF11864 DUF3384: Domain of un 49.7 5.1E+02 0.011 30.8 26.0 151 36-194 172-330 (464)
306 PF07539 DRIM: Down-regulated 49.3 1.8E+02 0.0039 29.3 10.6 109 163-286 15-135 (141)
307 KOG2011 Sister chromatid cohes 49.0 5.1E+02 0.011 34.2 16.7 168 96-274 262-434 (1048)
308 KOG1851 Uncharacterized conser 48.7 7.2E+02 0.016 34.4 18.0 153 114-275 1519-1678(1710)
309 PRK09169 hypothetical protein; 48.3 5.9E+02 0.013 36.4 17.7 229 44-296 671-922 (2316)
310 PF07571 DUF1546: Protein of u 47.3 32 0.00068 32.1 4.6 48 256-303 16-63 (92)
311 PF11707 Npa1: Ribosome 60S bi 46.3 4.9E+02 0.011 29.5 20.0 235 45-293 29-317 (330)
312 KOG1877 Putative transmembrane 45.0 1.3E+02 0.0027 38.5 10.4 167 77-253 15-200 (819)
313 PF08161 NUC173: NUC173 domain 44.8 4E+02 0.0088 28.3 12.9 59 93-151 14-72 (198)
314 cd03569 VHS_Hrs_Vps27p VHS dom 44.7 91 0.002 31.3 7.7 73 163-235 39-114 (142)
315 PRK14707 hypothetical protein; 44.7 1.2E+03 0.026 33.7 19.2 144 44-197 713-868 (2710)
316 KOG1848 Uncharacterized conser 43.7 2.5E+02 0.0055 37.9 12.9 172 88-284 851-1035(1610)
317 PF03810 IBN_N: Importin-beta 43.5 1.9E+02 0.004 24.8 8.6 48 62-112 2-49 (77)
318 cd00256 VATPase_H VATPase_H, r 43.2 6.5E+02 0.014 30.1 20.3 202 92-300 67-293 (429)
319 PF08146 BP28CT: BP28CT (NUC21 43.2 2.4E+02 0.0051 28.7 10.5 77 57-133 37-121 (153)
320 COG5537 IRR1 Cohesin [Cell div 43.0 6.7E+02 0.014 31.5 15.4 69 81-151 277-345 (740)
321 cd06561 AlkD_like A new struct 43.0 74 0.0016 32.3 7.0 59 88-151 114-172 (197)
322 PF08713 DNA_alkylation: DNA a 43.0 21 0.00045 36.8 3.1 60 86-151 127-186 (213)
323 PF14961 BROMI: Broad-minded p 42.2 3.7E+02 0.0079 36.0 14.0 67 80-149 162-231 (1296)
324 KOG0803 Predicted E3 ubiquitin 42.1 1.3E+02 0.0028 40.4 10.4 99 213-311 48-148 (1312)
325 PF12765 Cohesin_HEAT: HEAT re 41.8 31 0.00067 27.7 3.2 26 245-270 17-42 (42)
326 KOG3613 Dopey and related pred 40.6 4.9E+02 0.011 36.1 15.0 175 115-298 1392-1587(1749)
327 cd00197 VHS_ENTH_ANTH VHS, ENT 40.0 3.3E+02 0.0071 25.7 10.5 85 62-148 21-114 (115)
328 PF11640 TAN: Telomere-length 39.8 2.8E+02 0.0061 27.9 10.4 106 46-151 7-139 (155)
329 PF11919 DUF3437: Domain of un 39.6 44 0.00095 31.3 4.3 57 261-318 4-60 (90)
330 KOG2020 Nuclear transport rece 39.1 1.1E+03 0.024 31.5 21.1 201 43-250 47-278 (1041)
331 KOG2973 Uncharacterized conser 39.1 1.2E+02 0.0026 34.7 8.2 110 167-278 5-114 (353)
332 PF04388 Hamartin: Hamartin pr 39.0 3.9E+02 0.0085 33.6 13.5 96 115-215 65-161 (668)
333 PF11841 DUF3361: Domain of un 38.9 2.7E+02 0.0059 28.9 10.2 96 138-234 32-130 (160)
334 KOG2122 Beta-catenin-binding p 38.7 7.8E+02 0.017 34.1 15.9 50 226-278 508-562 (2195)
335 PF08146 BP28CT: BP28CT (NUC21 38.6 2.1E+02 0.0045 29.1 9.3 115 162-276 7-148 (153)
336 KOG2213 Apoptosis inhibitor 5/ 38.5 6.8E+02 0.015 29.8 14.1 64 57-130 40-106 (460)
337 KOG4500 Rho/Rac GTPase guanine 37.9 2.1E+02 0.0045 34.3 10.1 70 80-149 316-390 (604)
338 cd03567 VHS_GGA VHS domain fam 37.8 1.3E+02 0.0028 30.3 7.5 72 164-235 37-116 (139)
339 COG5543 Uncharacterized conser 37.6 5.5E+02 0.012 33.6 14.0 176 93-274 653-843 (1400)
340 PF14837 INTS5_N: Integrator c 37.4 5.8E+02 0.012 27.8 15.0 19 239-257 178-196 (213)
341 PF12726 SEN1_N: SEN1 N termin 37.0 9.6E+02 0.021 30.2 21.4 114 203-320 438-554 (727)
342 KOG2059 Ras GTPase-activating 36.9 1.2E+02 0.0025 38.1 8.2 133 73-214 282-430 (800)
343 smart00543 MIF4G Middle domain 35.9 4.6E+02 0.01 26.2 17.1 79 44-129 3-81 (200)
344 PF10805 DUF2730: Protein of u 35.7 59 0.0013 31.1 4.6 49 518-566 45-98 (106)
345 PF13374 TPR_10: Tetratricopep 35.5 62 0.0013 24.0 3.9 36 807-842 3-39 (42)
346 PF08713 DNA_alkylation: DNA a 35.2 90 0.002 32.1 6.3 132 53-205 63-195 (213)
347 KOG1048 Neural adherens juncti 35.0 1.1E+02 0.0025 38.3 7.9 136 75-218 518-666 (717)
348 smart00567 EZ_HEAT E-Z type HE 34.6 42 0.00092 24.3 2.7 30 93-132 1-30 (30)
349 cd03569 VHS_Hrs_Vps27p VHS dom 34.0 3E+02 0.0065 27.6 9.5 72 243-317 38-115 (142)
350 cd00872 PI3Ka_I Phosphoinositi 33.3 2.6E+02 0.0057 29.2 9.2 85 64-153 58-147 (171)
351 KOG4500 Rho/Rac GTPase guanine 33.1 9.7E+02 0.021 29.1 14.5 146 43-193 226-389 (604)
352 PF06371 Drf_GBD: Diaphanous G 32.8 58 0.0013 32.8 4.3 54 220-274 130-186 (187)
353 COG5314 Conjugal transfer/entr 32.8 1.1E+02 0.0025 33.5 6.6 57 512-568 41-104 (252)
354 cd03568 VHS_STAM VHS domain fa 32.7 4.4E+02 0.0095 26.6 10.4 74 243-316 34-110 (144)
355 PF09759 Atx10homo_assoc: Spin 32.4 87 0.0019 30.1 5.1 62 41-113 2-64 (102)
356 KOG1810 Cell cycle-associated 32.0 4.4E+02 0.0095 35.5 12.3 182 93-275 659-858 (1417)
357 KOG2140 Uncharacterized conser 31.9 1.1E+03 0.024 29.3 15.9 112 184-298 215-331 (739)
358 PF07539 DRIM: Down-regulated 31.2 1E+02 0.0022 31.0 5.7 44 246-293 17-61 (141)
359 KOG1848 Uncharacterized conser 31.2 3.4E+02 0.0074 36.8 11.3 119 77-195 995-1133(1610)
360 PF03542 Tuberin: Tuberin; In 30.7 9.2E+02 0.02 28.1 14.5 150 163-320 139-304 (356)
361 PF07719 TPR_2: Tetratricopept 30.3 90 0.002 22.2 3.9 30 807-836 2-31 (34)
362 PF12531 DUF3731: DNA-K relate 30.1 1.3E+02 0.0028 33.4 6.5 112 94-212 96-211 (249)
363 PF13424 TPR_12: Tetratricopep 30.0 1.1E+02 0.0024 26.1 5.0 40 804-843 3-42 (78)
364 PF11707 Npa1: Ribosome 60S bi 29.6 8.7E+02 0.019 27.5 15.6 187 114-320 21-238 (330)
365 PF04388 Hamartin: Hamartin pr 29.4 7.1E+02 0.015 31.3 13.6 87 205-293 69-158 (668)
366 cd05395 RasGAP_RASA4 Ras GTPas 28.9 9.6E+02 0.021 27.8 13.6 73 95-175 36-110 (337)
367 COG3416 Uncharacterized protei 28.6 1.3E+02 0.0028 32.6 6.0 31 602-632 84-115 (233)
368 PF12243 CTK3: CTD kinase subu 27.1 5E+02 0.011 26.4 9.7 80 38-123 3-87 (139)
369 PF08625 Utp13: Utp13 specific 26.9 1.3E+02 0.0029 30.3 5.6 84 44-129 28-120 (141)
370 KOG2011 Sister chromatid cohes 26.6 7.9E+02 0.017 32.6 13.4 113 77-195 280-401 (1048)
371 KOG1988 Uncharacterized conser 26.3 1.3E+03 0.028 30.1 14.7 88 53-148 75-166 (970)
372 PF03542 Tuberin: Tuberin; In 26.2 1.1E+03 0.024 27.5 17.0 130 34-175 135-282 (356)
373 KOG3723 PH domain protein Melt 26.0 1.1E+03 0.024 29.5 13.5 56 74-133 194-249 (851)
374 PF09324 DUF1981: Domain of un 25.9 2.8E+02 0.006 25.5 7.1 64 77-143 19-82 (86)
375 PF14228 MOR2-PAG1_mid: Cell m 25.5 1.2E+03 0.025 31.5 14.9 56 98-153 519-576 (1120)
376 PF02465 FliD_N: Flagellar hoo 25.4 1.9E+02 0.004 26.8 6.0 53 516-568 5-57 (99)
377 PF12783 Sec7_N: Guanine nucle 24.7 7.2E+02 0.016 25.0 12.3 96 220-318 36-145 (168)
378 cd03567 VHS_GGA VHS domain fam 24.4 6.4E+02 0.014 25.4 9.9 71 245-316 37-116 (139)
379 PF05997 Nop52: Nucleolar prot 23.9 3.5E+02 0.0075 29.1 8.4 73 124-199 4-77 (217)
380 smart00288 VHS Domain present 23.7 7.1E+02 0.015 24.5 10.0 74 243-316 34-111 (133)
381 KOG3613 Dopey and related pred 23.6 5.1E+02 0.011 35.9 11.2 132 39-176 1435-1583(1749)
382 cd03561 VHS VHS domain family; 23.5 7E+02 0.015 24.4 10.7 75 78-152 36-115 (133)
383 PF04003 Utp12: Dip2/Utp12 Fam 23.2 1.5E+02 0.0032 27.7 4.9 76 782-861 2-84 (110)
384 KOG2213 Apoptosis inhibitor 5/ 22.7 1.4E+03 0.03 27.5 17.6 100 179-281 211-320 (460)
385 PF14911 MMS22L_C: S-phase gen 22.7 1.3E+03 0.028 27.2 19.1 159 91-271 200-370 (373)
386 PF14668 RICTOR_V: Rapamycin-i 22.0 1.9E+02 0.004 26.3 5.0 55 95-151 3-60 (73)
387 PF14222 MOR2-PAG1_N: Cell mor 21.7 1.6E+03 0.034 27.8 18.8 190 115-317 30-252 (552)
388 PF08095 Toxin_25: Hefutoxin f 21.3 41 0.00089 23.7 0.5 17 697-714 2-18 (22)
389 PHA01351 putative minor struct 21.2 4.9E+02 0.011 33.0 9.6 33 185-217 120-152 (1070)
390 cd03565 VHS_Tom1 VHS domain fa 21.0 7.6E+02 0.016 24.8 9.7 73 243-316 35-115 (141)
391 KOG1988 Uncharacterized conser 21.0 2E+03 0.043 28.7 16.5 206 85-314 69-279 (970)
392 PF03130 HEAT_PBS: PBS lyase H 21.0 52 0.0011 23.8 1.1 27 95-131 1-27 (27)
393 PF10046 BLOC1_2: Biogenesis o 20.6 2.8E+02 0.0062 26.1 6.2 46 513-566 40-85 (99)
394 PHA02836 putative transmembran 20.3 1.1E+02 0.0024 31.0 3.4 65 66-132 74-141 (153)
395 PF11264 ThylakoidFormat: Thyl 20.1 1.1E+03 0.024 25.7 11.2 59 57-115 46-106 (216)
No 1
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=3e-30 Score=293.25 Aligned_cols=256 Identities=20% Similarity=0.243 Sum_probs=229.4
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhhcCCChHH
Q 002658 57 THQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGM 136 (896)
Q Consensus 57 T~k~Aa~eLD~La~~L~pd~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrLkDpDs~V 136 (896)
.|+|.++.||.+++-++.+.++.+|+.|.+.+.++.|.+|++++++||++||||.+++.||||.++|+++..|.|..+.|
T Consensus 371 LRkCSAAaLDVLanvf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplV 450 (885)
T KOG2023|consen 371 LRKCSAAALDVLANVFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLV 450 (885)
T ss_pred HhhccHHHHHHHHHhhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccce
Confidence 79999999999999998888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhc
Q 002658 137 KEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLS 216 (896)
Q Consensus 137 R~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~a~d~~~~yL~~LlPRL~kLLk 216 (896)
|.++|||+++++.|++... ..+++..+|.+|+..+.+.||.||+|||+|+|.+.|.+.+...|||.+++..|.+.++
T Consensus 451 RsITCWTLsRys~wv~~~~---~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~af~ 527 (885)
T KOG2023|consen 451 RSITCWTLSRYSKWVVQDS---RDEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEELVPYLEYILDQLVFAFG 527 (885)
T ss_pred eeeeeeeHhhhhhhHhcCC---hHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHH
Confidence 9999999999999997643 3467777888888888999999999999999999999999889999999999999998
Q ss_pred CCchhhHH--HHHHHHHHHH-hcc-ccC-cccHHHHHHHHHHh---hCCCCHHHHHHHHHHHHHHHHhcchHHHhh----
Q 002658 217 NQNFMAKA--SLLPVVGSLS-QVG-AIA-PQSLEPLLQSIHEC---LGSTDWATRKAAADALSALALHSSNLVIDG---- 284 (896)
Q Consensus 217 s~s~kaK~--alL~aIgSLA-~vg-a~~-~pyle~lLp~L~e~---LsddDW~lRKaA~EaLgsLA~avGe~L~Py---- 284 (896)
.||.|+ .+|+|||++| .+| +.. +.|++.+||+|.+. |+|+|..+ ..-+|||++||.++|+.|.||
T Consensus 528 --kYQ~KNLlILYDAIgtlAdsvg~~Ln~~~YiqiLmPPLi~KW~~lsd~DKdL-fPLLEClSsia~AL~~gF~P~~~~V 604 (885)
T KOG2023|consen 528 --KYQKKNLLILYDAIGTLADSVGHALNKPAYIQILMPPLIEKWELLSDSDKDL-FPLLECLSSIASALGVGFLPYAQPV 604 (885)
T ss_pred --HHhhcceehHHHHHHHHHHHHHHhcCcHHHHHHhccHHHHHHHhcCcccchH-HHHHHHHHHHHHHHhccccccCHHH
Confidence 899888 7999999999 478 443 88999999999984 78877554 566999999999999999999
Q ss_pred HHHHHHHHHhhhc-------C--CChhhHHHHHHHHHHHHHhc
Q 002658 285 ATSTLTVLEACRF-------D--KIKPVRDSMNEALQLWKKIA 318 (896)
Q Consensus 285 ~~~~I~~LE~~Rf-------D--KvKpVRDaA~eALe~WK~la 318 (896)
..+|+.+++.|.+ | -+-|.||+++.+|++..+++
T Consensus 605 y~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfiI~sLDL~SGLa 647 (885)
T KOG2023|consen 605 YQRCFRILQKTLQLLAKVQQDPTVEAPDKDFIIVSLDLLSGLA 647 (885)
T ss_pred HHHHHHHHHHHHHHHHhccCCccccCCCcceEEEeHHHHhHHH
Confidence 4677888775432 1 22568899999999999988
No 2
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.1e-27 Score=286.47 Aligned_cols=258 Identities=17% Similarity=0.207 Sum_probs=227.1
Q ss_pred HHHHHHHHHHHHHhcCCCCC-HHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhhcCCChH
Q 002658 57 THQIAIEDLEKTIQTLSQES-LPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSG 135 (896)
Q Consensus 57 T~k~Aa~eLD~La~~L~pd~-Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrLkDpDs~ 135 (896)
+...|.+.||.++.+|+++. +|+++.++...+++++|..|++++++|++++|||++.+.++|++|+++|+..|+||+|.
T Consensus 325 ~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~Dphpr 404 (1075)
T KOG2171|consen 325 PYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPR 404 (1075)
T ss_pred cHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHH
Confidence 88999999999999999887 99999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcccccCCchhHhhhHHH-HHHHH-hcCCHhHHHHHHHHHHHHHHhc-CCCCchhHHHHHH-HH
Q 002658 136 MKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKP-LFEAM-MEQNKGVQSGAAMCMAKMVECA-SDPPVVAFQKLCA-RI 211 (896)
Q Consensus 136 VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~p-L~eaL-~Eqnk~VQ~gAasALAkIIE~a-~d~~~~yL~~LlP-RL 211 (896)
||.|||++||+++..+ .+. ...++.+.++| |+..| ..++++||..||.||-.+.|.+ ++.+.+||+.||. +|
T Consensus 405 Vr~AA~naigQ~stdl-~p~---iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l 480 (1075)
T KOG2171|consen 405 VRYAALNAIGQMSTDL-QPE---IQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKL 480 (1075)
T ss_pred HHHHHHHHHHhhhhhh-cHH---HHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 9999999999999999 332 23556666664 45555 3569999999999999999886 5677799999999 55
Q ss_pred HHHhcCCchhhHHHHHHHHHHHHhc-cccCcccHHHHHHHHHHhhCC----CCHHHHHHHHHHHHHHHHhcc-hHHHhhH
Q 002658 212 CKLLSNQNFMAKASLLPVVGSLSQV-GAIAPQSLEPLLQSIHECLGS----TDWATRKAAADALSALALHSS-NLVIDGA 285 (896)
Q Consensus 212 ~kLLks~s~kaK~alL~aIgSLA~v-ga~~~pyle~lLp~L~e~Lsd----dDW~lRKaA~EaLgsLA~avG-e~L~Py~ 285 (896)
..++.+.+..+|..++.+|+++|.+ +..|.||++.+||.|..+|.. +...+|..++||++.|+.++| +.|.|+.
T Consensus 481 ~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~~~a 560 (1075)
T KOG2171|consen 481 LLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKFLPLA 560 (1075)
T ss_pred HHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhHhH
Confidence 5555667888999999999999864 478999999999999999876 347799999999999999999 9999999
Q ss_pred HHHHHHHHhh---hcCCChhhHHHHHHHHHHHHHhccCC
Q 002658 286 TSTLTVLEAC---RFDKIKPVRDSMNEALQLWKKIAGKV 321 (896)
Q Consensus 286 ~~~I~~LE~~---RfDKvKpVRDaA~eALe~WK~la~~~ 321 (896)
..+|+.+... -.|.+.|.|+. .+.+|..++..+
T Consensus 561 ~eliqll~~~~~~~~~~dd~~~sy---~~~~warmc~il 596 (1075)
T KOG2171|consen 561 EELIQLLLELQGSDQDDDDPLRSY---MIAFWARMCRIL 596 (1075)
T ss_pred HHHHHHHHhhcccchhhccccHHH---HHHHHHHHHHHh
Confidence 9999988655 56677889988 789999999887
No 3
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=1.7e-25 Score=254.80 Aligned_cols=265 Identities=13% Similarity=0.088 Sum_probs=239.8
Q ss_pred HHHHHHHHHHcC--CChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccc-hhh
Q 002658 41 MKQKILTSLSKL--ADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELT-STH 117 (896)
Q Consensus 41 Lk~rll~~L~KL--sDRDT~k~Aa~eLD~La~~L~pd~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I-~P~ 117 (896)
--+++.+.|... .|++|++.+...|+++-. -| +|++||-||+....+.+-..|..|+++|++.+++|...+ .+.
T Consensus 11 ~l~ql~~lLk~s~Spn~~~~~~~~~~leq~~~--~p-dfnnYL~~IL~~~~~~d~~~Rs~aGLlLKNnvr~~~~~~~~~~ 87 (885)
T KOG2023|consen 11 GLQQLAQLLKNSQSPNSETRNNVQEKLEQFNL--FP-DFNNYLIYILIRAKSEDVPTRSLAGLLLKNNVRGHYNSIPSEV 87 (885)
T ss_pred HHHHHHHHHHhccCCChHHHHHHHHHHHHHhc--cc-chhceeeEEEecccccchhHHHHhhhhHhccccccccCCChHH
Confidence 346777888666 699999999999998887 34 699999999988888889999999999999999999775 567
Q ss_pred HHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcC
Q 002658 118 VTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECAS 197 (896)
Q Consensus 118 LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~a~ 197 (896)
+.+|.+.++++|.|+++.||.+..-.|+.|+... + -..|+++|+.|.+.|..++-+.|+||+.||.|+||+..
T Consensus 88 ~~yiKs~~l~~lgd~~~lIr~tvGivITTI~s~~---~----~~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa 160 (885)
T KOG2023|consen 88 LDYIKSECLHGLGDASPLIRATVGIVITTIASTG---G----LQHWPELLPQLCELLDSPDYNTCEGAFGALQKICEDSA 160 (885)
T ss_pred HHHHHHHHHhhccCchHHHHhhhhheeeeeeccc---c----cccchhHHHHHHHHhcCCcccccchhHHHHHHHHhhhH
Confidence 8999999999999999999999999888888766 2 25699999999999999999999999999999999862
Q ss_pred C-----CCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcc-ccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 002658 198 D-----PPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVG-AIAPQSLEPLLQSIHECLGSTDWATRKAAADALS 271 (896)
Q Consensus 198 d-----~~~~yL~~LlPRL~kLLks~s~kaK~alL~aIgSLA~vg-a~~~pyle~lLp~L~e~LsddDW~lRKaA~EaLg 271 (896)
+ .....|+.|+|||+.+++|++.++|..++.||+.++-.. +.+..+++.++..|+....|++..+||.+|.+|+
T Consensus 161 ~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv 240 (885)
T KOG2023|consen 161 QFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALV 240 (885)
T ss_pred HHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHH
Confidence 2 223568999999999999999999999999999997655 6778899999999999999999999999999999
Q ss_pred HHHHhcchHHHhhHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHhc
Q 002658 272 ALALHSSNLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQLWKKIA 318 (896)
Q Consensus 272 sLA~avGe~L~Py~~~~I~~LE~~RfDKvKpVRDaA~eALe~WK~la 318 (896)
.+....++++.||+..+|+||....+|.++ ++|+||||||..++
T Consensus 241 ~Llevr~dkl~phl~~IveyML~~tqd~dE---~VALEACEFwla~a 284 (885)
T KOG2023|consen 241 FLLEVRPDKLVPHLDNIVEYMLQRTQDVDE---NVALEACEFWLALA 284 (885)
T ss_pred HHHHhcHHhcccchHHHHHHHHHHccCcch---hHHHHHHHHHHHHh
Confidence 999999999999999999999999999999 89999999999999
No 4
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=99.51 E-value=5.7e-13 Score=154.56 Aligned_cols=214 Identities=17% Similarity=0.217 Sum_probs=177.1
Q ss_pred HHHHHHHHHHHHHhcCCCCC---------HHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHH
Q 002658 57 THQIAIEDLEKTIQTLSQES---------LPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVK 127 (896)
Q Consensus 57 T~k~Aa~eLD~La~~L~pd~---------Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~Ilr 127 (896)
-+++.++..++++..|+..+ +..+|.++++...+ -...+..||+++...+..+.||||.|+++|++
T Consensus 732 yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~-----d~vml~gfg~V~~~lg~r~kpylpqi~stiL~ 806 (1172)
T KOG0213|consen 732 YRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTE-----DSVMLLGFGTVVNALGGRVKPYLPQICSTILW 806 (1172)
T ss_pred HHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccc-----hhhhhhhHHHHHHHHhhccccchHHHHHHHHH
Confidence 67899999999999886322 45556666554432 13677889999999999999999999999999
Q ss_pred hhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcC-CCCchhHHH
Q 002658 128 RLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECAS-DPPVVAFQK 206 (896)
Q Consensus 128 rLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~a~-d~~~~yL~~ 206 (896)
+|+.+.+.||+.+++.+++|+..+..++. ++.+..+=-.|+|.|++..+.|-.....||.+|+...+ ....+-+..
T Consensus 807 rLnnksa~vRqqaadlis~la~Vlktc~e---e~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm~km~pPi~d 883 (1172)
T KOG0213|consen 807 RLNNKSAKVRQQAADLISSLAKVLKTCGE---EKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPPIKD 883 (1172)
T ss_pred HhcCCChhHHHHHHHHHHHHHHHHHhccH---HHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhccccccCCChhh
Confidence 99999999999999999999999955532 24566666789999999999999988888888887653 233456888
Q ss_pred HHHHHHHHhcCCchhhHHHHHHHHHHHHhccccCcccHHHHHH--HHHHhhCCCCHHHHHHHHHHHHHHHHhcc
Q 002658 207 LCARICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQ--SIHECLGSTDWATRKAAADALSALALHSS 278 (896)
Q Consensus 207 LlPRL~kLLks~s~kaK~alL~aIgSLA~vga~~~pyle~lLp--~L~e~LsddDW~lRKaA~EaLgsLA~avG 278 (896)
|+|+|.++|+|.|-|+.+.+++++|.|+.-|..+.+.-+|.-- -|++.|......+|++|.++||.||.++|
T Consensus 884 llPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~IakaIG 957 (1172)
T KOG0213|consen 884 LLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAKAIG 957 (1172)
T ss_pred hcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhcC
Confidence 9999999999999999999999999999877555555555443 37788999999999999999999999999
No 5
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=99.51 E-value=7.5e-13 Score=152.87 Aligned_cols=299 Identities=15% Similarity=0.138 Sum_probs=231.5
Q ss_pred CccccCCCCCCCCCcchhhhHhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhcCCCCC--HHHHHHHHhhhcCCCCh
Q 002658 16 SQGQQSSSANASRSSSLSSHLAMVEMKQKILTSLSKLADRDTHQIAIEDLEKTIQTLSQES--LPMLLNCLYESSNDPKP 93 (896)
Q Consensus 16 ~~~~~~~~~~~~~~~~~s~~~~~~~Lk~rll~~L~KLsDRDT~k~Aa~eLD~La~~L~pd~--Lp~fLs~L~es~ss~k~ 93 (896)
++.-|.++++|.++.+..........-.+++.-+-...+-..++-|.-++-.+...+.-.. =..||.-|.....+.++
T Consensus 109 s~~~q~~~~~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~~~~~~~~l~~l~~ai~dk~~ 188 (569)
T KOG1242|consen 109 SKSVQRAVSTCLPPLVVLSKGLSGEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGIESLKEFGFLDNLSKAIIDKKS 188 (569)
T ss_pred cHHHHHHHHHHhhhHHHHhhccCHHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHHhhhhhhhHHHHHHHHhcccch
Confidence 3445688889998777665544433333333322224444455556666666666543222 23567888888878787
Q ss_pred hhHHH-HHHHHHHHHHHhcccchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHH
Q 002658 94 AVKKE-SVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFE 172 (896)
Q Consensus 94 ~vRKe-AIllLG~IAeg~~d~I~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~e 172 (896)
..|++ +..++..++...+....||+..++|.|+..+.|....||+|+.+++-++...+... -+..++++++.
T Consensus 189 ~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~-------aVK~llpsll~ 261 (569)
T KOG1242|consen 189 ALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAY-------AVKLLLPSLLG 261 (569)
T ss_pred hhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcc-------hhhHhhhhhHH
Confidence 77775 88888888888888899999999999999999999999999999999999999332 27789999999
Q ss_pred HHhcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhc----------------
Q 002658 173 AMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQV---------------- 236 (896)
Q Consensus 173 aL~Eqnk~VQ~gAasALAkIIE~a~d~~~~yL~~LlPRL~kLLks~s~kaK~alL~aIgSLA~v---------------- 236 (896)
.|.+..+..-.++..-|..+.++++.+..-+++.++|.+.+.|.+.+.++|.+.+.|+--+..+
T Consensus 262 ~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld~ 341 (569)
T KOG1242|consen 262 SLLEAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLDA 341 (569)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 9987788888899999999999999988889999999999999999999887655553322100
Q ss_pred ---------------c-ccC-----cccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhc--chHHHhhHHHHHHHHH
Q 002658 237 ---------------G-AIA-----PQSLEPLLQSIHECLGSTDWATRKAAADALSALALHS--SNLVIDGATSTLTVLE 293 (896)
Q Consensus 237 ---------------g-a~~-----~pyle~lLp~L~e~LsddDW~lRKaA~EaLgsLA~av--Ge~L~Py~~~~I~~LE 293 (896)
+ ..| .|.+..++|.|...|.+.+..+++.++..+..|+..+ +..+.||++.++.-++
T Consensus 342 l~dp~~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk 421 (569)
T KOG1242|consen 342 LADPSCYTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLK 421 (569)
T ss_pred hcCcccchHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHH
Confidence 0 011 3556677788888888888899999999999999999 4789999999999999
Q ss_pred hhhcCCChhhHHHHHHHH-HHHHHhccCC
Q 002658 294 ACRFDKIKPVRDSMNEAL-QLWKKIAGKV 321 (896)
Q Consensus 294 ~~RfDKvKpVRDaA~eAL-e~WK~la~~~ 321 (896)
..-.|-+++||.++.+|| .+.+.+...+
T Consensus 422 ~~~~d~~PEvR~vaarAL~~l~e~~g~~~ 450 (569)
T KOG1242|consen 422 ENLDDAVPEVRAVAARALGALLERLGEVS 450 (569)
T ss_pred HHhcCCChhHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999 6666666444
No 6
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.46 E-value=5.5e-12 Score=147.57 Aligned_cols=277 Identities=16% Similarity=0.199 Sum_probs=214.2
Q ss_pred hHhHHHHHHHHHHHHHcCC---Chh---HHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHH
Q 002658 35 HLAMVEMKQKILTSLSKLA---DRD---THQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCE 108 (896)
Q Consensus 35 ~~~~~~Lk~rll~~L~KLs---DRD---T~k~Aa~eLD~La~~L~pd~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAe 108 (896)
..++..+.-.|+..|.|-. |.| ..+.|-..|..+++....+-+++.|++|.+.+++++|..|.+++++||-+-+
T Consensus 314 ~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~ 393 (859)
T KOG1241|consen 314 RQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILE 393 (859)
T ss_pred HHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhc
Confidence 3456677778888888862 222 7888888999999988877799999999999999999999999999999999
Q ss_pred Hhc-ccchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccC-----------------------------
Q 002658 109 LHS-ELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEEN----------------------------- 158 (896)
Q Consensus 109 g~~-d~I~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~----------------------------- 158 (896)
|-. +.+.|+.+.-+|.|+..+.||.-.||+++.|++|+++..+.......
T Consensus 394 gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~DePrva~N~CWAf~ 473 (859)
T KOG1241|consen 394 GPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLNDEPRVASNVCWAFI 473 (859)
T ss_pred CCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhhCchHHHHHHHHHH
Confidence 866 55899999999999999999999999999999999998775420000
Q ss_pred ------------C------ch-----------------------------------------------------------
Q 002658 159 ------------N------GT----------------------------------------------------------- 161 (896)
Q Consensus 159 ------------~------~~----------------------------------------------------------- 161 (896)
. ..
T Consensus 474 ~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l~il~kl~q 553 (859)
T KOG1241|consen 474 SLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTLVILEKLDQ 553 (859)
T ss_pred HHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHH
Confidence 0 00
Q ss_pred ---------------------------------------hHhhhHHHHHHHHhc-CCHhHHHHHHHHHHHHHHhcCCCCc
Q 002658 162 ---------------------------------------VVGLFVKPLFEAMME-QNKGVQSGAAMCMAKMVECASDPPV 201 (896)
Q Consensus 162 ---------------------------------------~~~~lL~pL~eaL~E-qnk~VQ~gAasALAkIIE~a~d~~~ 201 (896)
....++..++..|.. ..-.|++-|++|+.++++..+....
T Consensus 554 ~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d~iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~ 633 (859)
T KOG1241|consen 554 TISSQILSLADRAQLNELQSLLCNTLQSIIRKVGSDIREVSDQIMGLFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFA 633 (859)
T ss_pred HHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhHhHH
Confidence 011111111111111 1223666677777777777777777
Q ss_pred hhHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHh-ccccCcccHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHHHHhc
Q 002658 202 VAFQKLCARICKLLSN-QNFMAKASLLPVVGSLSQ-VGAIAPQSLEPLLQSIHECLGST--DWATRKAAADALSALALHS 277 (896)
Q Consensus 202 ~yL~~LlPRL~kLLks-~s~kaK~alL~aIgSLA~-vga~~~pyle~lLp~L~e~Lsdd--DW~lRKaA~EaLgsLA~av 277 (896)
.|.+.+.|.|..-|++ ..|++-.++++++|-++. .++.+.||.+.+|..|.++|+++ +..++-+.+-++|-||.++
T Consensus 634 kym~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~i~py~d~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAlaI 713 (859)
T KOG1241|consen 634 KYMPAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDDILPYCDELMTVLVQCLSSPNLHRNVKPAILSVFGDIALAI 713 (859)
T ss_pred HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHccCccccccccchHHHHHHHHHHHH
Confidence 8889999999999954 688888899999999985 45789999999999999999996 5678888999999999999
Q ss_pred chHHHhhHHHHHHHHHhh---hcCC--------ChhhHHHHHHHH
Q 002658 278 SNLVIDGATSTLTVLEAC---RFDK--------IKPVRDSMNEAL 311 (896)
Q Consensus 278 Ge~L~Py~~~~I~~LE~~---RfDK--------vKpVRDaA~eAL 311 (896)
|..|.||+..++..|+.- ..|. +..+|+.+++|.
T Consensus 714 g~~F~~Yl~~vm~llq~as~~~~d~~~~~~~dYvd~LRe~~leay 758 (859)
T KOG1241|consen 714 GADFEPYLEMVMPLLQQASSVQTDPADDSMVDYVDELREGILEAY 758 (859)
T ss_pred HHhHHHHHHHHHHHHHHHHhccCCCCcccHHHHHHHHHHHHHHHH
Confidence 999999999999988733 3343 244788755553
No 7
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.45 E-value=1.7e-11 Score=148.86 Aligned_cols=275 Identities=17% Similarity=0.234 Sum_probs=221.4
Q ss_pred HhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccch
Q 002658 36 LAMVEMKQKILTSLSKLADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTS 115 (896)
Q Consensus 36 ~~~~~Lk~rll~~L~KLsDRDT~k~Aa~eLD~La~~L~pd~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I~ 115 (896)
+.-..+|..+|.++.+=.....++--++.+-.+++.+-|+..|-+|.+|.+...++++..|+.|++.|..+.+..+....
T Consensus 75 e~~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~ 154 (1075)
T KOG2171|consen 75 EVQQSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPEKWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQ 154 (1075)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccc
Confidence 34456788888887666556678888888888888876768999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHh----cCCHhHHHHHHHHHHH
Q 002658 116 THVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMM----EQNKGVQSGAAMCMAK 191 (896)
Q Consensus 116 P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~----Eqnk~VQ~gAasALAk 191 (896)
||+..+++.+.+++.|++..||-+++.+++.++.++-... ..-..+..++|.++..|. +.+..+-..++.||..
T Consensus 155 ~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~--~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~E 232 (1075)
T KOG2171|consen 155 PHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNK--SEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIE 232 (1075)
T ss_pred hhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccch--HHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHH
Confidence 9999999999999999998899999999999999992110 112456667777777774 3344445567777777
Q ss_pred HHHhcCCCCchhHHHHHHHHHHHhcCC--chhhHHHHHHHHHHHHhcc----ccCcccHHHHHH----------------
Q 002658 192 MVECASDPPVVAFQKLCARICKLLSNQ--NFMAKASLLPVVGSLSQVG----AIAPQSLEPLLQ---------------- 249 (896)
Q Consensus 192 IIE~a~d~~~~yL~~LlPRL~kLLks~--s~kaK~alL~aIgSLA~vg----a~~~pyle~lLp---------------- 249 (896)
+.|..+..+.++|..++.-.+++.++. ...+|-.+|.+|-+++... ....+|...+++
T Consensus 233 l~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~ 312 (1075)
T KOG2171|consen 233 LLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWS 312 (1075)
T ss_pred HHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhc
Confidence 777778888899999999999999886 4568888888888876432 112223333333
Q ss_pred ---------------------------------------HHHHhhCCCCHHHHHHHHHHHHHHHHhcchHHHhhHHHHHH
Q 002658 250 ---------------------------------------SIHECLGSTDWATRKAAADALSALALHSSNLVIDGATSTLT 290 (896)
Q Consensus 250 ---------------------------------------~L~e~LsddDW~lRKaA~EaLgsLA~avGe~L~Py~~~~I~ 290 (896)
.+..+|.+.+|.-|++|+-+|+.++...++.+.+.+++++.
T Consensus 313 ~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~ 392 (1075)
T KOG2171|consen 313 NEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILP 392 (1075)
T ss_pred cccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 34445788999999999999999999999999999999999
Q ss_pred HHHhhhcCCChhhHHHHHHHHH
Q 002658 291 VLEACRFDKIKPVRDSMNEALQ 312 (896)
Q Consensus 291 ~LE~~RfDKvKpVRDaA~eALe 312 (896)
+....-.|.++-||-+|+-|+.
T Consensus 393 ~Vl~~l~DphprVr~AA~naig 414 (1075)
T KOG2171|consen 393 IVLNGLNDPHPRVRYAALNAIG 414 (1075)
T ss_pred HHHhhcCCCCHHHHHHHHHHHH
Confidence 9999999999999998555544
No 8
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=99.24 E-value=1.2e-09 Score=125.09 Aligned_cols=259 Identities=15% Similarity=0.135 Sum_probs=190.6
Q ss_pred HHHHHHHHHHHcCC------ChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhccc
Q 002658 40 EMKQKILTSLSKLA------DRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSEL 113 (896)
Q Consensus 40 ~Lk~rll~~L~KLs------DRDT~k~Aa~eLD~La~~L~pd~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~ 113 (896)
+.-..++..|.|-+ |=.....|...|+.+++.....-+.+.|.++.+.+.+++|..|++++++||-+.+|-.+.
T Consensus 321 dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~ 400 (858)
T COG5215 321 DVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGDKIMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCED 400 (858)
T ss_pred HHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhhHhHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHH
Confidence 44556777887751 222777788889999887666569999999999999999999999999999999987655
Q ss_pred -chhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcc---c-------------ccCC-----------------
Q 002658 114 -TSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNG---K-------------EENN----------------- 159 (896)
Q Consensus 114 -I~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~---~-------------~e~~----------------- 159 (896)
+.++.++.+|.|+....|+.--|.+.+.|++|+|+.++..- + ..+.
T Consensus 401 ~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va~~i~p~~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h 480 (858)
T COG5215 401 CLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAMIISPCGHLVLEVSASLIGLMDCPFRSINCSWRKENLVDH 480 (858)
T ss_pred HHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHHHhcCccccccHHHHHHHhhhhccchHHhhhHHHHHhHHHh
Confidence 78899999999999999999999999999999999887541 0 0000
Q ss_pred --------chhHhhhHHHHHHHHh------cC------------------------------------------------
Q 002658 160 --------GTVVGLFVKPLFEAMM------EQ------------------------------------------------ 177 (896)
Q Consensus 160 --------~~~~~~lL~pL~eaL~------Eq------------------------------------------------ 177 (896)
...+..|.+.++.+|. .+
T Consensus 481 ~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~a~~~~~~~~kl~~~isv~~q~ 560 (858)
T COG5215 481 IAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPDAVSDILAGFYDYTSKKLDECISVLGQI 560 (858)
T ss_pred hhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 0011111111222110 00
Q ss_pred --------CHhHHHHHHHHHHHHHHhcC------------------------------------------CCCchhHHHH
Q 002658 178 --------NKGVQSGAAMCMAKMVECAS------------------------------------------DPPVVAFQKL 207 (896)
Q Consensus 178 --------nk~VQ~gAasALAkIIE~a~------------------------------------------d~~~~yL~~L 207 (896)
-..+|.--+.-|+++|...+ +....|+++.
T Consensus 561 l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~v~D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl~e~Fe~y~~~f 640 (858)
T COG5215 561 LATEDQLLVEELQSNYIGVLEAIIRTRRRDIEDVEDQLMELFIRILESTKPTTAFGDVYTAISALSTSLEERFEQYASKF 640 (858)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 12233344444555443321 1122356778
Q ss_pred HHHHHHHhcCCchhhHHHHHHHHHHHHh-ccccCcccHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHHHHhcchHHHhh
Q 002658 208 CARICKLLSNQNFMAKASLLPVVGSLSQ-VGAIAPQSLEPLLQSIHECLGST--DWATRKAAADALSALALHSSNLVIDG 284 (896)
Q Consensus 208 lPRL~kLLks~s~kaK~alL~aIgSLA~-vga~~~pyle~lLp~L~e~Lsdd--DW~lRKaA~EaLgsLA~avGe~L~Py 284 (896)
+|.|.+.|+...+.+-..++..||-++. .|..|.+|.+.+|..|.++|+++ +..++-+.+-+++-||.++|-.|.||
T Consensus 641 iPyl~~aln~~d~~v~~~avglvgdlantl~~df~~y~d~~ms~LvQ~lss~~~~R~lKPaiLSvFgDIAlaiga~F~~Y 720 (858)
T COG5215 641 IPYLTRALNCTDRFVLNSAVGLVGDLANTLGTDFNIYADVLMSSLVQCLSSEATHRDLKPAILSVFGDIALAIGANFESY 720 (858)
T ss_pred hHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcChhhccccchHHHHHHHHHHHHHhhhHHHH
Confidence 8889999987888888888888888885 56889999999999999999985 56788899999999999999999999
Q ss_pred HHHHHHHHH-hhhcC
Q 002658 285 ATSTLTVLE-ACRFD 298 (896)
Q Consensus 285 ~~~~I~~LE-~~RfD 298 (896)
++.++-.+. .+..|
T Consensus 721 L~~im~L~qqas~~~ 735 (858)
T COG5215 721 LDMIMMLFQQASELD 735 (858)
T ss_pred HHHHHHHHHHHhccC
Confidence 999998876 33344
No 9
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=99.17 E-value=1.2e-09 Score=113.27 Aligned_cols=197 Identities=16% Similarity=0.212 Sum_probs=142.8
Q ss_pred HHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHh--ccc---chhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHH
Q 002658 77 LPMLLNCLYESSNDPKPAVKKESVRLLALVCELH--SEL---TSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLY 151 (896)
Q Consensus 77 Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~--~d~---I~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~l 151 (896)
|..++..|.....+.+|..|.+++.-|..++.++ .+. +.++|..++..|+..+.|..+.|-..+|.+++.|+..+
T Consensus 5 ~~~~~~~l~~~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l 84 (228)
T PF12348_consen 5 FEEILAALEKKESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQL 84 (228)
T ss_dssp -GGS-TTHHHHHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 4455666655567788999999999999999999 233 45566667799999999999999999999999999999
Q ss_pred hcccccCCchhHhhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHH-HHHHHHHhcCCchhhHHHHHHHH
Q 002658 152 LNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKL-CARICKLLSNQNFMAKASLLPVV 230 (896)
Q Consensus 152 i~~~~e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~a~d~~~~yL~~L-lPRL~kLLks~s~kaK~alL~aI 230 (896)
-.. + ..+...++++|++.+++.++.+...|..||..+++... |...+ .+.+...+++.+.++|..++.++
T Consensus 85 ~~~-~---~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~-----~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l 155 (228)
T PF12348_consen 85 GSH-F---EPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCS-----YSPKILLEILSQGLKSKNPQVREECAEWL 155 (228)
T ss_dssp GGG-G---HHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS------H--HHHHHHHHHHTT-S-HHHHHHHHHHH
T ss_pred hHh-H---HHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCC-----cHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 432 2 36688899999999999999999999999999999764 33455 77888889999999999999999
Q ss_pred HHHHh-cc---ccCc--ccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcchHHH
Q 002658 231 GSLSQ-VG---AIAP--QSLEPLLQSIHECLGSTDWATRKAAADALSALALHSSNLVI 282 (896)
Q Consensus 231 gSLA~-vg---a~~~--pyle~lLp~L~e~LsddDW~lRKaA~EaLgsLA~avGe~L~ 282 (896)
..++. .+ ..+. ..++.+++.|..++.|.+..+|.+|-++|..+....|+...
T Consensus 156 ~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a~ 213 (228)
T PF12348_consen 156 AIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPERAE 213 (228)
T ss_dssp HHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH-
T ss_pred HHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhhc
Confidence 98864 33 2232 24688999999999999999999999999999999995433
No 10
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=99.12 E-value=3.1e-09 Score=123.46 Aligned_cols=250 Identities=16% Similarity=0.172 Sum_probs=192.6
Q ss_pred HHHHHHHHHHcCCC--hhHHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccchhhH
Q 002658 41 MKQKILTSLSKLAD--RDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHV 118 (896)
Q Consensus 41 Lk~rll~~L~KLsD--RDT~k~Aa~eLD~La~~L~pd~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I~P~L 118 (896)
+..-+..+|.+.+| ...++.|....+.+...+++..+..||+.+...+.+.+|+.+.+++.+||.++...++.+.-++
T Consensus 214 iv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~l 293 (569)
T KOG1242|consen 214 IVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCL 293 (569)
T ss_pred HHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHH
Confidence 44445556666654 4488888999999999998877777777777776666999999999999999998889999999
Q ss_pred HHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHh--c
Q 002658 119 TKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVEC--A 196 (896)
Q Consensus 119 pkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~--a 196 (896)
|.|+|.+...|.|..+.||.|+-.++-.+.+.+ +. ..+..++|-|+++|.+++..+.+ |+..+... .
T Consensus 294 p~iiP~lsevl~DT~~evr~a~~~~l~~~~svi-dN------~dI~~~ip~Lld~l~dp~~~~~e----~~~~L~~ttFV 362 (569)
T KOG1242|consen 294 PDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVI-DN------PDIQKIIPTLLDALADPSCYTPE----CLDSLGATTFV 362 (569)
T ss_pred hHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhh-cc------HHHHHHHHHHHHHhcCcccchHH----HHHhhcceeee
Confidence 999999999999999999999999999999999 32 23778999999999988866664 23333322 1
Q ss_pred CCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHH-hcc--ccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 002658 197 SDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLS-QVG--AIAPQSLEPLLQSIHECLGSTDWATRKAAADALSAL 273 (896)
Q Consensus 197 ~d~~~~yL~~LlPRL~kLLks~s~kaK~alL~aIgSLA-~vg--a~~~pyle~lLp~L~e~LsddDW~lRKaA~EaLgsL 273 (896)
.....+-|..|+|-|..-|+..+.-.|-.+...++=++ -+. ....+|++.++|.|...+.+...++|-.|..+|+.+
T Consensus 363 ~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l 442 (569)
T KOG1242|consen 363 AEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGAL 442 (569)
T ss_pred eeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHH
Confidence 33334678899999999998776666655455555443 243 456899999999999999999999999999999999
Q ss_pred HHhcc-hHHHhhHHHHHHHHHhhhcCCCh
Q 002658 274 ALHSS-NLVIDGATSTLTVLEACRFDKIK 301 (896)
Q Consensus 274 A~avG-e~L~Py~~~~I~~LE~~RfDKvK 301 (896)
...+| ..|..-.+.+.+.+..+..++.+
T Consensus 443 ~e~~g~~~f~d~~p~l~e~~~~~k~~~~~ 471 (569)
T KOG1242|consen 443 LERLGEVSFDDLIPELSETLTSEKSLVDR 471 (569)
T ss_pred HHHHHhhcccccccHHHHhhccchhhhhh
Confidence 99999 55532234444444444444433
No 11
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=99.12 E-value=8.4e-10 Score=126.98 Aligned_cols=215 Identities=15% Similarity=0.158 Sum_probs=162.9
Q ss_pred HHHHHHHHHHHHHhcCCC----CC-----HHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHH
Q 002658 57 THQIAIEDLEKTIQTLSQ----ES-----LPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVK 127 (896)
Q Consensus 57 T~k~Aa~eLD~La~~L~p----d~-----Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~Ilr 127 (896)
-+++++...++++..|+- +. +..+|.++++...+. .-.+-.|+++.-...-...|||+.|+++|++
T Consensus 537 ~r~m~a~~vsri~~~lg~~~~dErleerl~d~il~Afqeq~~t~-----~~il~~f~tv~vsl~~r~kp~l~~ivStiL~ 611 (975)
T COG5181 537 YRKMNAGLVSRIFSRLGRLGFDERLEERLYDSILNAFQEQDTTV-----GLILPCFSTVLVSLEFRGKPHLSMIVSTILK 611 (975)
T ss_pred hhhhhhHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhccccc-----cEEEecccceeeehhhccCcchHHHHHHHHH
Confidence 577888888888887752 11 444555555443321 2344556666665556679999999999999
Q ss_pred hhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcC-CCCchhHHH
Q 002658 128 RLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECAS-DPPVVAFQK 206 (896)
Q Consensus 128 rLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~a~-d~~~~yL~~ 206 (896)
+|+.+.|.||..+++.+|.|+..+..++. .+.+..+=..|+|.|++..+.|-.....|+..|....+ ....|-+..
T Consensus 612 ~L~~k~p~vR~~aadl~~sl~~vlk~c~e---~~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~mqpPi~~ 688 (975)
T COG5181 612 LLRSKPPDVRIRAADLMGSLAKVLKACGE---TKELAKLGNILYENLGEDYPEVLGSILKAICSIYSVHRFRSMQPPISG 688 (975)
T ss_pred HhcCCCccHHHHHHHHHHHHHHHHHhcch---HHHHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhcccccCCchhh
Confidence 99999999999999999999999955532 24566677789999999999998776666666665542 223456888
Q ss_pred HHHHHHHHhcCCchhhHHHHHHHHHHHHhccccCcccHHHHH--HHHHHhhCCCCHHHHHHHHHHHHHHHHhcch
Q 002658 207 LCARICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLL--QSIHECLGSTDWATRKAAADALSALALHSSN 279 (896)
Q Consensus 207 LlPRL~kLLks~s~kaK~alL~aIgSLA~vga~~~pyle~lL--p~L~e~LsddDW~lRKaA~EaLgsLA~avGe 279 (896)
|+|+|.++|++.+-|+.+..+..+|.|...+....+.-+|.- --|++.|.+.+.++|+.|.++||.|+.++|+
T Consensus 689 ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~aiGP 763 (975)
T COG5181 689 ILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRAIGP 763 (975)
T ss_pred ccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhcCH
Confidence 999999999999999999999999998765533333334433 2377788999999999999999999999994
No 12
>PRK09687 putative lyase; Provisional
Probab=99.10 E-value=6.2e-09 Score=113.13 Aligned_cols=184 Identities=11% Similarity=0.090 Sum_probs=129.7
Q ss_pred CChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHh-hcC
Q 002658 53 ADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKR-LKD 131 (896)
Q Consensus 53 sDRDT~k~Aa~eLD~La~~L~pd~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~Ilrr-LkD 131 (896)
.|...+..|+..|..+- +++.++.+... ..+.++.+|..++.+||.+.. .+.. ....++.+... ++|
T Consensus 35 ~d~~vR~~A~~aL~~~~---~~~~~~~l~~l----l~~~d~~vR~~A~~aLg~lg~--~~~~---~~~a~~~L~~l~~~D 102 (280)
T PRK09687 35 HNSLKRISSIRVLQLRG---GQDVFRLAIEL----CSSKNPIERDIGADILSQLGM--AKRC---QDNVFNILNNLALED 102 (280)
T ss_pred CCHHHHHHHHHHHHhcC---cchHHHHHHHH----HhCCCHHHHHHHHHHHHhcCC--Cccc---hHHHHHHHHHHHhcC
Confidence 45557778887776443 23334444443 246679999999999998743 1111 45667777766 799
Q ss_pred CChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 002658 132 SDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARI 211 (896)
Q Consensus 132 pDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~a~d~~~~yL~~LlPRL 211 (896)
+++.||..++.+||.+..... ...+.++..|..++.+.++.|+.+|+.||..+- + +..++-|
T Consensus 103 ~d~~VR~~A~~aLG~~~~~~~--------~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~----~------~~ai~~L 164 (280)
T PRK09687 103 KSACVRASAINATGHRCKKNP--------LYSPKIVEQSQITAFDKSTNVRFAVAFALSVIN----D------EAAIPLL 164 (280)
T ss_pred CCHHHHHHHHHHHhccccccc--------ccchHHHHHHHHHhhCCCHHHHHHHHHHHhccC----C------HHHHHHH
Confidence 999999999999998743221 113456777777888889999999999996442 1 2467888
Q ss_pred HHHhcCCchhhHHHHHHHHHHHHhccccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 002658 212 CKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSAL 273 (896)
Q Consensus 212 ~kLLks~s~kaK~alL~aIgSLA~vga~~~pyle~lLp~L~e~LsddDW~lRKaA~EaLgsL 273 (896)
+.+|+++++.+|..++.++|.+ . ..-+.+++.|...|.|.++.+|+.|+.+|+.+
T Consensus 165 ~~~L~d~~~~VR~~A~~aLg~~-~------~~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~ 219 (280)
T PRK09687 165 INLLKDPNGDVRNWAAFALNSN-K------YDNPDIREAFVAMLQDKNEEIRIEAIIGLALR 219 (280)
T ss_pred HHHhcCCCHHHHHHHHHHHhcC-C------CCCHHHHHHHHHHhcCCChHHHHHHHHHHHcc
Confidence 8888888888888888777775 1 11225677788888888888998888888854
No 13
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.06 E-value=7.9e-09 Score=121.72 Aligned_cols=263 Identities=14% Similarity=0.151 Sum_probs=194.2
Q ss_pred HHHHHHHcC--CChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhc--CCCChhhHHHHHHHHHHHHHHhccc------
Q 002658 44 KILTSLSKL--ADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESS--NDPKPAVKKESVRLLALVCELHSEL------ 113 (896)
Q Consensus 44 rll~~L~KL--sDRDT~k~Aa~eLD~La~~L~pd~Lp~fLs~L~es~--ss~k~~vRKeAIllLG~IAeg~~d~------ 113 (896)
++++.|.+. .|+..++.|-+.|+++.. ..|+.|+.+|.+-+ ...+...|..|++.|++....-...
T Consensus 2 ~~~~~le~tlSpD~n~~~~Ae~~l~~~~~----~nf~~F~~~Ls~vl~n~~~~~~~R~~AGL~LKN~L~akd~~~k~~~~ 77 (859)
T KOG1241|consen 2 ELLELLEKTLSPDQNVRKRAEKQLEQAQS----QNFPQFLVLLSEVLANDNSSDVARMAAGLQLKNSLTAKDPERKQQYQ 77 (859)
T ss_pred cHHHHHHHHcCCCcchHHHHHHHHHHHHh----ccHHHHHHHHHHHHhccCCcHHHHHHHhHHHhhhhccCCHHHHHHHH
Confidence 345666555 799999999999999886 24888888887664 3456789999999999875432211
Q ss_pred ------chhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhcCC-HhHHHHHH
Q 002658 114 ------TSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQN-KGVQSGAA 186 (896)
Q Consensus 114 ------I~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~Eqn-k~VQ~gAa 186 (896)
-..--.+|...|++.|+-|.|.++.+|.-+++.+|..=+- ...||.|+..|.....+.. -.+.++++
T Consensus 78 qRWl~l~~e~reqVK~~il~tL~~~ep~~~s~Aaq~va~IA~~ElP------~n~wp~li~~lv~nv~~~~~~~~k~~sl 151 (859)
T KOG1241|consen 78 QRWLQLPAEIREQVKNNILRTLGSPEPRRPSSAAQCVAAIACIELP------QNQWPELIVTLVSNVGEEQASMVKESSL 151 (859)
T ss_pred HHHHcCCHHHHHHHHHHHHHHcCCCCCCccchHHHHHHHHHHhhCc------hhhCHHHHHHHHHhcccccchHHHHHHH
Confidence 1233578899999999999999999999999999987632 2569999999999996544 46999999
Q ss_pred HHHHHHHHhc-CCCCchhHHHHHHHHHHHhc-C-CchhhHHHHHHHH-HHHHhccccC--cccHHHHHHHHHHhhCCCCH
Q 002658 187 MCMAKMVECA-SDPPVVAFQKLCARICKLLS-N-QNFMAKASLLPVV-GSLSQVGAIA--PQSLEPLLQSIHECLGSTDW 260 (896)
Q Consensus 187 sALAkIIE~a-~d~~~~yL~~LlPRL~kLLk-s-~s~kaK~alL~aI-gSLA~vga~~--~pyle~lLp~L~e~LsddDW 260 (896)
.||.=+||+. ++......+.++--++.-.. . ++..+|-+++.|+ .|+--.++.| ..--+-+|+...+.-..+|-
T Consensus 152 ealGyice~i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~ 231 (859)
T KOG1241|consen 152 EALGYICEDIDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPDE 231 (859)
T ss_pred HHHHHHHccCCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCcH
Confidence 9999999986 33333445555555554443 2 4666776666653 3442222333 22334578888999999999
Q ss_pred HHHHHHHHHHHHHHHhcchHHHhhHHHHHHHH--HhhhcCCChhhHHHHHHHHHHHHHhccC
Q 002658 261 ATRKAAADALSALALHSSNLVIDGATSTLTVL--EACRFDKIKPVRDSMNEALQLWKKIAGK 320 (896)
Q Consensus 261 ~lRKaA~EaLgsLA~avGe~L~Py~~~~I~~L--E~~RfDKvKpVRDaA~eALe~WK~la~~ 320 (896)
++|-+|.+||..|+...-+++.||+.+.+=.+ ...+-| ++ ++|++++|||..|+..
T Consensus 232 ~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~-~d---eValQaiEFWsticeE 289 (859)
T KOG1241|consen 232 EIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSD-ND---EVALQAIEFWSTICEE 289 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-cH---HHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998854433 344434 34 5999999999988854
No 14
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.94 E-value=8.6e-08 Score=118.95 Aligned_cols=240 Identities=18% Similarity=0.188 Sum_probs=127.6
Q ss_pred hhhhHhHHHHHHHHHHHHHcC---CChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHH
Q 002658 32 LSSHLAMVEMKQKILTSLSKL---ADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCE 108 (896)
Q Consensus 32 ~s~~~~~~~Lk~rll~~L~KL---sDRDT~k~Aa~eLD~La~~L~pd~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAe 108 (896)
.+-..+++.|..-.+..|.+. .|.++|+.|+..|-.+- +++.++.+. ..+.++++.+|..|+.+|+.+.+
T Consensus 609 ~~~~~~~~~l~~~~~~~L~~~L~D~d~~VR~~Av~~L~~~~---~~~~~~~L~----~aL~D~d~~VR~~Aa~aL~~l~~ 681 (897)
T PRK13800 609 SPRILAVLALDAPSVAELAPYLADPDPGVRRTAVAVLTETT---PPGFGPALV----AALGDGAAAVRRAAAEGLRELVE 681 (897)
T ss_pred hHHHHHHHhccchhHHHHHHHhcCCCHHHHHHHHHHHhhhc---chhHHHHHH----HHHcCCCHHHHHHHHHHHHHHHh
Confidence 334466677766655555444 56779999988887654 333344433 33456778888888888877754
Q ss_pred Hhccc--chh---------------hHHHH----HHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhH
Q 002658 109 LHSEL--TST---------------HVTKI----ISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFV 167 (896)
Q Consensus 109 g~~d~--I~P---------------~LpkI----L~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL 167 (896)
..... +.. .|..+ ...+++.|+|+|+.||.+++.+|+.+- . .
T Consensus 682 ~~~~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~~~~l~~~L~D~d~~VR~~Av~aL~~~~-----~------------~ 744 (897)
T PRK13800 682 VLPPAPALRDHLGSPDPVVRAAALDVLRALRAGDAALFAAALGDPDHRVRIEAVRALVSVD-----D------------V 744 (897)
T ss_pred ccCchHHHHHHhcCCCHHHHHHHHHHHHhhccCCHHHHHHHhcCCCHHHHHHHHHHHhccc-----C------------c
Confidence 22110 000 01111 123455666666666666666666431 0 1
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhccccC-------
Q 002658 168 KPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVGAIA------- 240 (896)
Q Consensus 168 ~pL~eaL~Eqnk~VQ~gAasALAkIIE~a~d~~~~yL~~LlPRL~kLLks~s~kaK~alL~aIgSLA~vga~~------- 240 (896)
+.|..++.+.++.|+.+|+.+|..+-..... -++.|..++++++..+|.+++.+++.+-......
T Consensus 745 ~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~~--------~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL 816 (897)
T PRK13800 745 ESVAGAATDENREVRIAVAKGLATLGAGGAP--------AGDAVRALTGDPDPLVRAAALAALAELGCPPDDVAAATAAL 816 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhccccch--------hHHHHHHHhcCCCHHHHHHHHHHHHhcCCcchhHHHHHHHh
Confidence 2345556667777777777777665432110 1334445555555555555444444321000000
Q ss_pred ---c-------------ccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcchHHHhhHHHHHHHHHhhhcCCChhhH
Q 002658 241 ---P-------------QSLEPLLQSIHECLGSTDWATRKAAADALSALALHSSNLVIDGATSTLTVLEACRFDKIKPVR 304 (896)
Q Consensus 241 ---~-------------pyle~lLp~L~e~LsddDW~lRKaA~EaLgsLA~avGe~L~Py~~~~I~~LE~~RfDKvKpVR 304 (896)
. -.-+..++.|..+|.|++|.+|+.|+.+|+.+ -+ -...+..|.....|.+..||
T Consensus 817 ~d~d~~VR~~Aa~aL~~l~~~~a~~~L~~~L~D~~~~VR~~A~~aL~~~---~~------~~~a~~~L~~al~D~d~~Vr 887 (897)
T PRK13800 817 RASAWQVRQGAARALAGAAADVAVPALVEALTDPHLDVRKAAVLALTRW---PG------DPAARDALTTALTDSDADVR 887 (897)
T ss_pred cCCChHHHHHHHHHHHhccccchHHHHHHHhcCCCHHHHHHHHHHHhcc---CC------CHHHHHHHHHHHhCCCHHHH
Confidence 0 00013345566666666677777777666664 11 12234444455557788788
Q ss_pred HHHHHHHH
Q 002658 305 DSMNEALQ 312 (896)
Q Consensus 305 DaA~eALe 312 (896)
..|.+||+
T Consensus 888 ~~A~~aL~ 895 (897)
T PRK13800 888 AYARRALA 895 (897)
T ss_pred HHHHHHHh
Confidence 88777775
No 15
>PRK09687 putative lyase; Provisional
Probab=98.93 E-value=2.4e-08 Score=108.57 Aligned_cols=194 Identities=13% Similarity=0.067 Sum_probs=144.2
Q ss_pred CHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhccc
Q 002658 76 SLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGK 155 (896)
Q Consensus 76 ~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~ 155 (896)
.+..++.+|. +.+..+|..++.+|+.+.. +.+++.+.+.++|+++.||.+++++||+|...-
T Consensus 24 ~~~~L~~~L~----d~d~~vR~~A~~aL~~~~~----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~---- 85 (280)
T PRK09687 24 NDDELFRLLD----DHNSLKRISSIRVLQLRGG----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAK---- 85 (280)
T ss_pred cHHHHHHHHh----CCCHHHHHHHHHHHHhcCc----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCc----
Confidence 3556666664 6778999999999986653 556777888899999999999999999864311
Q ss_pred ccCCchhHhhhHHHHHHH-HhcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHH
Q 002658 156 EENNGTVVGLFVKPLFEA-MMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLS 234 (896)
Q Consensus 156 ~e~~~~~~~~lL~pL~ea-L~Eqnk~VQ~gAasALAkIIE~a~d~~~~yL~~LlPRL~kLLks~s~kaK~alL~aIgSLA 234 (896)
......++.|... +.++++.|+..|+.+|..++.... .+...++..+..++.+++..+|..++.++|.+
T Consensus 86 -----~~~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~----~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~- 155 (280)
T PRK09687 86 -----RCQDNVFNILNNLALEDKSACVRASAINATGHRCKKNP----LYSPKIVEQSQITAFDKSTNVRFAVAFALSVI- 155 (280)
T ss_pred -----cchHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccc----ccchHHHHHHHHHhhCCCHHHHHHHHHHHhcc-
Confidence 0024566677766 478899999999999999865332 22456777788888888889998766666543
Q ss_pred hccccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcchHHHhhHHHHHHHHHhhhcCCChhhHHHHHHHHHH
Q 002658 235 QVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSSNLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQL 313 (896)
Q Consensus 235 ~vga~~~pyle~lLp~L~e~LsddDW~lRKaA~EaLgsLA~avGe~L~Py~~~~I~~LE~~RfDKvKpVRDaA~eALe~ 313 (896)
+ -+..++.|..+|.+++|.+|..|+.+||.+.... +.++..|.....|.+..||..|..+|..
T Consensus 156 --~------~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~--------~~~~~~L~~~L~D~~~~VR~~A~~aLg~ 218 (280)
T PRK09687 156 --N------DEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDN--------PDIREAFVAMLQDKNEEIRIEAIIGLAL 218 (280)
T ss_pred --C------CHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCC--------HHHHHHHHHHhcCCChHHHHHHHHHHHc
Confidence 1 1357899999999999999999999999882211 2344444444579999999998887754
No 16
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.88 E-value=4.7e-08 Score=112.41 Aligned_cols=243 Identities=21% Similarity=0.306 Sum_probs=156.7
Q ss_pred CChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhhcCC
Q 002658 53 ADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDS 132 (896)
Q Consensus 53 sDRDT~k~Aa~eLD~La~~L~pd~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrLkDp 132 (896)
.|-...+++.-.|..+... +++.+....+.|...+.++++.+|-.|+..|+.++ ....++.+++.|.+.|.|+
T Consensus 54 ~~~~~Krl~yl~l~~~~~~-~~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~------~~~~~~~l~~~v~~ll~~~ 126 (526)
T PF01602_consen 54 KDLELKRLGYLYLSLYLHE-DPELLILIINSLQKDLNSPNPYIRGLALRTLSNIR------TPEMAEPLIPDVIKLLSDP 126 (526)
T ss_dssp SSHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH-------SHHHHHHHHHHHHHHHHSS
T ss_pred CCHHHHHHHHHHHHHHhhc-chhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhc------ccchhhHHHHHHHHHhcCC
Confidence 5666888888888877762 34346667788877788999999999999998877 4455677899999999999
Q ss_pred ChHHHHHHHHHHHHHHHHHhcccccCCchhHhh-hHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 002658 133 DSGMKEACRDSIGSLSKLYLNGKEENNGTVVGL-FVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARI 211 (896)
Q Consensus 133 Ds~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~-lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~a~d~~~~yL~~LlPRL 211 (896)
++.||..|+-++..+.....+ ..+. +++.|...|.++++.|+.+|+.+|..+ ...++.....++.+..+|
T Consensus 127 ~~~VRk~A~~~l~~i~~~~p~--------~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~~~~~~~~~L 197 (526)
T PF01602_consen 127 SPYVRKKAALALLKIYRKDPD--------LVEDELIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYKSLIPKLIRIL 197 (526)
T ss_dssp SHHHHHHHHHHHHHHHHHCHC--------CHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHTTHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhccCHH--------HHHHHHHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhhhhHHHHHHHh
Confidence 999999999999999988622 2344 789999999999999999999999988 222111115567777777
Q ss_pred HHHhcCCchhhHHHHHHHHHHHHhcc-----------------------------------ccCcccHHHHHHHHHHhhC
Q 002658 212 CKLLSNQNFMAKASLLPVVGSLSQVG-----------------------------------AIAPQSLEPLLQSIHECLG 256 (896)
Q Consensus 212 ~kLLks~s~kaK~alL~aIgSLA~vg-----------------------------------a~~~pyle~lLp~L~e~Ls 256 (896)
.+++..++.-.+..++.++..++... ....+.+..+++.|..+|.
T Consensus 198 ~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~~~~~~~~~L~~lL~ 277 (526)
T PF01602_consen 198 CQLLSDPDPWLQIKILRLLRRYAPMEPEDADKNRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPELLQKAINPLIKLLS 277 (526)
T ss_dssp HHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHT
T ss_pred hhcccccchHHHHHHHHHHHhcccCChhhhhHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcchHHHHhhHHHHHHHhh
Confidence 77766665544433333333322110 0111234455556666666
Q ss_pred CCCHHHHHHHHHHHHHHHHhcchHHHhhHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHhc
Q 002658 257 STDWATRKAAADALSALALHSSNLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQLWKKIA 318 (896)
Q Consensus 257 ddDW~lRKaA~EaLgsLA~avGe~L~Py~~~~I~~LE~~RfDKvKpVRDaA~eALe~WK~la 318 (896)
+++..+|-.|+++|..|+...++.+. +..- .+..+++|.+..||.. +|+....+.
T Consensus 278 s~~~nvr~~~L~~L~~l~~~~~~~v~-~~~~---~~~~l~~~~d~~Ir~~---~l~lL~~l~ 332 (526)
T PF01602_consen 278 SSDPNVRYIALDSLSQLAQSNPPAVF-NQSL---ILFFLLYDDDPSIRKK---ALDLLYKLA 332 (526)
T ss_dssp SSSHHHHHHHHHHHHHHCCHCHHHHG-THHH---HHHHHHCSSSHHHHHH---HHHHHHHH-
T ss_pred cccchhehhHHHHHHHhhcccchhhh-hhhh---hhheecCCCChhHHHH---HHHHHhhcc
Confidence 66666666666666666555532222 2221 2234445555555543 444444444
No 17
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.81 E-value=1.3e-07 Score=108.90 Aligned_cols=219 Identities=20% Similarity=0.200 Sum_probs=144.5
Q ss_pred CChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhhcCC
Q 002658 53 ADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDS 132 (896)
Q Consensus 53 sDRDT~k~Aa~eLD~La~~L~pd~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrLkDp 132 (896)
.+...+..|+..|-.+. .++.++.+++.|.....+++|.+||.|++++..+...+++.+.+. +++.+.+.|.|+
T Consensus 91 ~n~~~~~lAL~~l~~i~---~~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~---~~~~l~~lL~d~ 164 (526)
T PF01602_consen 91 PNPYIRGLALRTLSNIR---TPEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDE---LIPKLKQLLSDK 164 (526)
T ss_dssp SSHHHHHHHHHHHHHH----SHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGG---HHHHHHHHTTHS
T ss_pred CCHHHHHHHHhhhhhhc---ccchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHH---HHHHHhhhccCC
Confidence 34457778887777776 466788889999888889999999999999999999988877654 578888889999
Q ss_pred ChHHHHHHHHHHHHHHHHHhcccccCCchhHh---------------------------------------hhHHHHHHH
Q 002658 133 DSGMKEACRDSIGSLSKLYLNGKEENNGTVVG---------------------------------------LFVKPLFEA 173 (896)
Q Consensus 133 Ds~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~---------------------------------------~lL~pL~ea 173 (896)
++.|+.+|+.++..+ ....... ....+ .++..+...
T Consensus 165 ~~~V~~~a~~~l~~i--~~~~~~~---~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~~~~i~~l~~~ 239 (526)
T PF01602_consen 165 DPSVVSAALSLLSEI--KCNDDSY---KSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADKNRIIEPLLNL 239 (526)
T ss_dssp SHHHHHHHHHHHHHH--HCTHHHH---TTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHH--ccCcchh---hhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhHHHHHHHHHHH
Confidence 999999999988888 1100000 01122 233333333
Q ss_pred HhcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhccccCcccHHHHHHHHHH
Q 002658 174 MMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHE 253 (896)
Q Consensus 174 L~Eqnk~VQ~gAasALAkIIE~a~d~~~~yL~~LlPRL~kLLks~s~kaK~alL~aIgSLA~vga~~~pyle~lLp~L~e 253 (896)
|...++.|...++.++..+.. ..+++..+++.|.++|.+++.-+|-.+|.+|..++. ..++.+...-..++-
T Consensus 240 l~s~~~~V~~e~~~~i~~l~~-----~~~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~---~~~~~v~~~~~~~~~ 311 (526)
T PF01602_consen 240 LQSSSPSVVYEAIRLIIKLSP-----SPELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQ---SNPPAVFNQSLILFF 311 (526)
T ss_dssp HHHHHHHHHHHHHHHHHHHSS-----SHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCC---HCHHHHGTHHHHHHH
T ss_pred hhccccHHHHHHHHHHHHhhc-----chHHHHhhHHHHHHHhhcccchhehhHHHHHHHhhc---ccchhhhhhhhhhhe
Confidence 333333333333333332221 112677889999999998888888888888888754 224445433333443
Q ss_pred hhCCCCHHHHHHHHHHHHHHHHhcchHHHhhHHHHHHHH
Q 002658 254 CLGSTDWATRKAAADALSALALHSSNLVIDGATSTLTVL 292 (896)
Q Consensus 254 ~LsddDW~lRKaA~EaLgsLA~avGe~L~Py~~~~I~~L 292 (896)
+..++|..+|+.+++.|..++.. +.+...+..+++++
T Consensus 312 l~~~~d~~Ir~~~l~lL~~l~~~--~n~~~Il~eL~~~l 348 (526)
T PF01602_consen 312 LLYDDDPSIRKKALDLLYKLANE--SNVKEILDELLKYL 348 (526)
T ss_dssp HHCSSSHHHHHHHHHHHHHH--H--HHHHHHHHHHHHHH
T ss_pred ecCCCChhHHHHHHHHHhhcccc--cchhhHHHHHHHHH
Confidence 44589999999999999998863 34444455555554
No 18
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.81 E-value=3.1e-07 Score=108.11 Aligned_cols=210 Identities=20% Similarity=0.218 Sum_probs=158.8
Q ss_pred HHHhhhcCCCChhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCch
Q 002658 82 NCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGT 161 (896)
Q Consensus 82 s~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~ 161 (896)
+-+..-+++.+|++||-||++|=-+..-|++.+.|-.|++ ...|.||||.|.+||+.+|-.||+.-.+.
T Consensus 147 ~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAlr~~FprL----~EkLeDpDp~V~SAAV~VICELArKnPkn------- 215 (877)
T KOG1059|consen 147 DDVFTLLNSSKPYVRKKAILLLYKVFLKYPEALRPCFPRL----VEKLEDPDPSVVSAAVSVICELARKNPQN------- 215 (877)
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhHhhhHHHH----HHhccCCCchHHHHHHHHHHHHHhhCCcc-------
Confidence 3344445788999999999999999999999999988765 56899999999999999999999887443
Q ss_pred hHhhhHHHHHHHH--hcCCHhHHHHHHHHHHHHHHhcCCCCchhHH-HHHHHHHHHhcCCchhhHHHHHHHHHHHHhcc-
Q 002658 162 VVGLFVKPLFEAM--MEQNKGVQSGAAMCMAKMVECASDPPVVAFQ-KLCARICKLLSNQNFMAKASLLPVVGSLSQVG- 237 (896)
Q Consensus 162 ~~~~lL~pL~eaL--~Eqnk~VQ~gAasALAkIIE~a~d~~~~yL~-~LlPRL~kLLks~s~kaK~alL~aIgSLA~vg- 237 (896)
+-.+-|.+|..| ..+|+..-. |-++.-.. .+..|-|. +|+|.|+.++++ .-+...+|.||++++.+.
T Consensus 216 -yL~LAP~ffkllttSsNNWmLIK-----iiKLF~aL-tplEPRLgKKLieplt~li~s--T~AmSLlYECvNTVVa~s~ 286 (877)
T KOG1059|consen 216 -YLQLAPLFYKLLVTSSNNWVLIK-----LLKLFAAL-TPLEPRLGKKLIEPITELMES--TVAMSLLYECVNTVVAVSM 286 (877)
T ss_pred -cccccHHHHHHHhccCCCeehHH-----HHHHHhhc-cccCchhhhhhhhHHHHHHHh--hHHHHHHHHHHHHheeehh
Confidence 334667778888 356665432 11222111 22335455 699999999984 456678999999997653
Q ss_pred -ccCcc---cHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcchHHHhhHHHHHHHHHhhhcCCChhhHHHHHHHHHH
Q 002658 238 -AIAPQ---SLEPLLQSIHECLGSTDWATRKAAADALSALALHSSNLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQL 313 (896)
Q Consensus 238 -a~~~p---yle~lLp~L~e~LsddDW~lRKaA~EaLgsLA~avGe~L~Py~~~~I~~LE~~RfDKvKpVRDaA~eALe~ 313 (896)
...+. .+..+++-|..++.++|..+|=-.+-||+.|+...+..+..|.+=+++.|. |++..+|- +||++
T Consensus 287 s~g~~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~kdlIlrcL~----DkD~SIRl---rALdL 359 (877)
T KOG1059|consen 287 SSGMSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAHKDLILRCLD----DKDESIRL---RALDL 359 (877)
T ss_pred ccCCCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHhHHHHHHHhc----cCCchhHH---HHHHH
Confidence 22333 444566667778999999999999999999999999999989887777666 99997774 68888
Q ss_pred HHHhc
Q 002658 314 WKKIA 318 (896)
Q Consensus 314 WK~la 318 (896)
.-++.
T Consensus 360 l~gmV 364 (877)
T KOG1059|consen 360 LYGMV 364 (877)
T ss_pred HHHHh
Confidence 76665
No 19
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.77 E-value=3.6e-07 Score=105.36 Aligned_cols=254 Identities=15% Similarity=0.160 Sum_probs=190.6
Q ss_pred hHHHHHHHHHHHHHhcCC-C---CCHHHHHHHH-hhhcCCCChhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhhc
Q 002658 56 DTHQIAIEDLEKTIQTLS-Q---ESLPMLLNCL-YESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLK 130 (896)
Q Consensus 56 DT~k~Aa~eLD~La~~L~-p---d~Lp~fLs~L-~es~ss~k~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrLk 130 (896)
+-++.|+-+|++++..+- . +++.-++..| .+...++....||.++..+++++-+.+....+|+.+|++-|+.++.
T Consensus 15 ekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~~iv~Pv~~cf~ 94 (675)
T KOG0212|consen 15 EKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAGYLEKIVPPVLNCFS 94 (675)
T ss_pred HHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHHHHHHhhHHHHHhcc
Confidence 468999999999998863 2 2377777744 4666778888899999999999888887777799999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCc-h-hHHHHH
Q 002658 131 DSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPV-V-AFQKLC 208 (896)
Q Consensus 131 DpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~a~d~~~-~-yL~~Ll 208 (896)
|+|..||.-+|+++-.++...-.. .-.+++.++..|.....+.+..|+.| +.-|.+++.+...... . -|+.++
T Consensus 95 D~d~~vRyyACEsLYNiaKv~k~~----v~~~Fn~iFdvL~klsaDsd~~V~~~-aeLLdRLikdIVte~~~tFsL~~~i 169 (675)
T KOG0212|consen 95 DQDSQVRYYACESLYNIAKVAKGE----VLVYFNEIFDVLCKLSADSDQNVRGG-AELLDRLIKDIVTESASTFSLPEFI 169 (675)
T ss_pred CccceeeeHhHHHHHHHHHHhccC----cccchHHHHHHHHHHhcCCccccccH-HHHHHHHHHHhccccccccCHHHHH
Confidence 999999999999999999988322 12456666666666667888899865 4558999987532222 2 377788
Q ss_pred HHHHHHhcCCchhhHHHHHHHHHHHHhcc-ccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcc-h-HHHhhH
Q 002658 209 ARICKLLSNQNFMAKASLLPVVGSLSQVG-AIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSS-N-LVIDGA 285 (896)
Q Consensus 209 PRL~kLLks~s~kaK~alL~aIgSLA~vg-a~~~pyle~lLp~L~e~LsddDW~lRKaA~EaLgsLA~avG-e-~L~Py~ 285 (896)
|-|-.-+...+..+|..+++-|.-+-.+- -.+..|++.+++.|+.+|+|+..++|..+=-+|+.+...+. + ... -.
T Consensus 170 pLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~-d~ 248 (675)
T KOG0212|consen 170 PLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSM-DY 248 (675)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCcccc-Cc
Confidence 88877777777888999999888874333 34678999999999999999999999888888888777766 2 221 23
Q ss_pred HHHHHHHHhhhcCCChhhHHHHHHHHHHHHHhc
Q 002658 286 TSTLTVLEACRFDKIKPVRDSMNEALQLWKKIA 318 (896)
Q Consensus 286 ~~~I~~LE~~RfDKvKpVRDaA~eALe~WK~la 318 (896)
.+.++++-.-..-..+..+.- ||.-..+|.
T Consensus 249 ~~~i~vlv~~l~ss~~~iq~~---al~Wi~efV 278 (675)
T KOG0212|consen 249 DDMINVLVPHLQSSEPEIQLK---ALTWIQEFV 278 (675)
T ss_pred ccchhhccccccCCcHHHHHH---HHHHHHHHh
Confidence 566666665555556644444 444444443
No 20
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.77 E-value=1.5e-07 Score=109.02 Aligned_cols=253 Identities=14% Similarity=0.185 Sum_probs=186.0
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHHHHhcC--------CCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhc
Q 002658 40 EMKQKILTSLSKLADRDTHQIAIEDLEKTIQTL--------SQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHS 111 (896)
Q Consensus 40 ~Lk~rll~~L~KLsDRDT~k~Aa~eLD~La~~L--------~pd~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~ 111 (896)
....+++.+|..-.+...+--|+=.|-.|+..- +...+|.|+.++. ++...+|+.|+-+||+++.-.+
T Consensus 109 G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~----s~~~~v~eQavWALgNIagds~ 184 (514)
T KOG0166|consen 109 GVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLS----SPSADVREQAVWALGNIAGDSP 184 (514)
T ss_pred CcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhc----CCcHHHHHHHHHHHhccccCCh
Confidence 455677777776655667778888888888631 2333777666666 6778999999999999986443
Q ss_pred ---ccchhhHHHHHHHHHHhhcCCCh-HHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhcCCHhHHHHHHH
Q 002658 112 ---ELTSTHVTKIISHIVKRLKDSDS-GMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAM 187 (896)
Q Consensus 112 ---d~I~P~LpkIL~~IlrrLkDpDs-~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAas 187 (896)
+++.. ..++..++..|..+++ .....+.|+|..|++.- +|. ...+....+|+.|+..|...++.|..=||.
T Consensus 185 ~~Rd~vl~--~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk-~P~--P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~W 259 (514)
T KOG0166|consen 185 DCRDYVLS--CGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGK-NPS--PPFDVVAPILPALLRLLHSTDEEVLTDACW 259 (514)
T ss_pred HHHHHHHh--hcchHHHHHHhccccchHHHHHHHHHHHHHHcCC-CCC--CcHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 33332 3456677777777775 33445679999999887 332 233678889999999999999999999999
Q ss_pred HHHHHHHhcCCCCchhHH-HHHHHHHHHhcCCchhhHHHHHHHHHHHHhccccC-cc-cHHHHHHHHHHhhC-CCCHHHH
Q 002658 188 CMAKMVECASDPPVVAFQ-KLCARICKLLSNQNFMAKASLLPVVGSLSQVGAIA-PQ-SLEPLLQSIHECLG-STDWATR 263 (896)
Q Consensus 188 ALAkIIE~a~d~~~~yL~-~LlPRL~kLLks~s~kaK~alL~aIgSLA~vga~~-~p-yle~lLp~L~e~Ls-ddDW~lR 263 (896)
||.-+.+...+.+...++ .+||||+++|.++..+++..+|-+||-++...+.. .. .-..++|+|..+|+ +....+|
T Consensus 260 AlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ik 339 (514)
T KOG0166|consen 260 ALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIK 339 (514)
T ss_pred HHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHH
Confidence 999999887666555555 59999999999999999988999999965322211 11 11246788888988 4555699
Q ss_pred HHHHHHHHHHHHhcchHHHhh-----HHHHHHHHHhhhcCCCh
Q 002658 264 KAAADALSALALHSSNLVIDG-----ATSTLTVLEACRFDKIK 301 (896)
Q Consensus 264 KaA~EaLgsLA~avGe~L~Py-----~~~~I~~LE~~RfDKvK 301 (896)
|.||=+|+.|+..-.+.+.-. ++.+|+.|+..-||--|
T Consensus 340 kEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rK 382 (514)
T KOG0166|consen 340 KEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRK 382 (514)
T ss_pred HHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHH
Confidence 999999999998555555533 57778888888887666
No 21
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.69 E-value=1.8e-06 Score=104.01 Aligned_cols=222 Identities=16% Similarity=0.172 Sum_probs=162.6
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHH-HHHHHH-HHHHHhcccchh
Q 002658 39 VEMKQKILTSLSKLADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKE-SVRLLA-LVCELHSELTST 116 (896)
Q Consensus 39 ~~Lk~rll~~L~KLsDRDT~k~Aa~eLD~La~~L~pd~Lp~fLs~L~es~ss~k~~vRKe-AIllLG-~IAeg~~d~I~P 116 (896)
.+++.-++.+|+--. -|....|..+|-.++- + .++.||++|++...++ +.|++ -+..|. ++.....+.+.|
T Consensus 856 ~e~~~~iieaf~sp~-edvksAAs~ALGsl~v--g--nl~~yLpfil~qi~sq--pk~QyLLLhSlkevi~~~svd~~~~ 928 (1233)
T KOG1824|consen 856 NELKDTIIEAFNSPS-EDVKSAASYALGSLAV--G--NLPKYLPFILEQIESQ--PKRQYLLLHSLKEVIVSASVDGLKP 928 (1233)
T ss_pred hhhHHHHHHHcCCCh-HHHHHHHHHHhhhhhc--C--chHhHHHHHHHHHhcc--hHhHHHHHHHHHHHHHHhccchhhh
Confidence 345555666665443 5677777777777664 2 4788888888777432 22333 223333 344444577899
Q ss_pred hHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhc
Q 002658 117 HVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECA 196 (896)
Q Consensus 117 ~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~a 196 (896)
+.++|+..+.+...-.+-.+|...++++|.|+-.= + ..++|.|-..+....++....+.+|+--.|-+-
T Consensus 929 ~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~l~e--p---------esLlpkL~~~~~S~a~~~rs~vvsavKfsisd~ 997 (1233)
T KOG1824|consen 929 YVEKIWALLFKHCECAEEGTRNVVAECLGKLVLIE--P---------ESLLPKLKLLLRSEASNTRSSVVSAVKFSISDQ 997 (1233)
T ss_pred hHHHHHHHHHHhcccchhhhHHHHHHHhhhHHhCC--h---------HHHHHHHHHHhcCCCcchhhhhhheeeeeecCC
Confidence 99999999999999999999999999999887433 2 358888888887777777777777766556555
Q ss_pred CCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcc-ccCcccHHHHHHHHHHh------------------hCC
Q 002658 197 SDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVG-AIAPQSLEPLLQSIHEC------------------LGS 257 (896)
Q Consensus 197 ~d~~~~yL~~LlPRL~kLLks~s~kaK~alL~aIgSLA~vg-a~~~pyle~lLp~L~e~------------------Lsd 257 (896)
+..+.+|+.+-+..+++++++|..++|..+|.+++|++.-. ......++.++|.|.+- ..|
T Consensus 998 p~~id~~lk~~ig~fl~~~~dpDl~VrrvaLvv~nSaahNKpslIrDllpeLLp~Ly~eTkvrkelIreVeMGPFKH~VD 1077 (1233)
T KOG1824|consen 998 PQPIDPLLKQQIGDFLKLLRDPDLEVRRVALVVLNSAAHNKPSLIRDLLPELLPLLYSETKVRKELIREVEMGPFKHTVD 1077 (1233)
T ss_pred CCccCHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHHHhhhhhHhhhhhhcccCcccccc
Confidence 66667899999999999999999999999999999988644 34455666777766442 235
Q ss_pred CCHHHHHHHHHHHHHHHHhcc
Q 002658 258 TDWATRKAAADALSALALHSS 278 (896)
Q Consensus 258 dDW~lRKaA~EaLgsLA~avG 278 (896)
+...+||+|.||++++...-=
T Consensus 1078 dgLd~RKaaFEcmytLLdscl 1098 (1233)
T KOG1824|consen 1078 DGLDLRKAAFECMYTLLDSCL 1098 (1233)
T ss_pred chHHHHHHHHHHHHHHHHhhh
Confidence 679999999999999876543
No 22
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.68 E-value=1.9e-06 Score=99.62 Aligned_cols=278 Identities=15% Similarity=0.135 Sum_probs=216.8
Q ss_pred hHHHHHHHHHHHHHcC-CChh-HHHHHHHHHHHHHhcCCC-CC----HHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHH
Q 002658 37 AMVEMKQKILTSLSKL-ADRD-THQIAIEDLEKTIQTLSQ-ES----LPMLLNCLYESSNDPKPAVKKESVRLLALVCEL 109 (896)
Q Consensus 37 ~~~~Lk~rll~~L~KL-sDRD-T~k~Aa~eLD~La~~L~p-d~----Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg 109 (896)
+.+.....+..+|-|+ +|.| .-+-|++-||+++..+.. ++ ++.|++.|.+.+...++..|..-+.-|..+=..
T Consensus 118 ~v~~~Fn~iFdvL~klsaDsd~~V~~~aeLLdRLikdIVte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~ 197 (675)
T KOG0212|consen 118 EVLVYFNEIFDVLCKLSADSDQNVRGGAELLDRLIKDIVTESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSV 197 (675)
T ss_pred CcccchHHHHHHHHHHhcCCccccccHHHHHHHHHHHhccccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcC
Confidence 3345556667777777 4544 678899999999987632 22 899999999999888999999988888666554
Q ss_pred hcccchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhcCCHhHHHHHHHHH
Q 002658 110 HSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCM 189 (896)
Q Consensus 110 ~~d~I~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasAL 189 (896)
-+-.+.-|+|.+++-+...|.|+...||..|-.+++.+-..+-..+ . .-......+.|..-+.++++..|.-|..=+
T Consensus 198 P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P-~--s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi 274 (675)
T KOG0212|consen 198 PDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSP-S--SMDYDDMINVLVPHLQSSEPEIQLKALTWI 274 (675)
T ss_pred CcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCc-c--ccCcccchhhccccccCCcHHHHHHHHHHH
Confidence 4344788999999999999999999999999999999999984322 1 113566777777888889999999998888
Q ss_pred HHHHHhcCCCCchhHHHHHHHHHHHhcCCchh-hHHHHHHHH---HHHHhcc-ccCcccHHHHHHHHHHhhCCCCHHHHH
Q 002658 190 AKMVECASDPPVVAFQKLCARICKLLSNQNFM-AKASLLPVV---GSLSQVG-AIAPQSLEPLLQSIHECLGSTDWATRK 264 (896)
Q Consensus 190 AkIIE~a~d~~~~yL~~LlPRL~kLLks~s~k-aK~alL~aI---gSLA~vg-a~~~pyle~lLp~L~e~LsddDW~lRK 264 (896)
..++.-.+....+|+..++..+++++.+...+ +|..+-..- .++.... ..-.--+..+|..|...++++.-.+|.
T Consensus 275 ~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri 354 (675)
T KOG0212|consen 275 QEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSDDREETRI 354 (675)
T ss_pred HHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhcchHHHHH
Confidence 88887778888899999999999999876554 454333332 2222111 111123458999999999999999999
Q ss_pred HHHHHHHHHHHhcchHHHhhHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHhccC
Q 002658 265 AAADALSALALHSSNLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQLWKKIAGK 320 (896)
Q Consensus 265 aA~EaLgsLA~avGe~L~Py~~~~I~~LE~~RfDKvKpVRDaA~eALe~WK~la~~ 320 (896)
+|.+=+..+-...|..+.-|..++...|....-|... +++..+|++...|+..
T Consensus 355 ~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd---~vvl~~L~lla~i~~s 407 (675)
T KOG0212|consen 355 AVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSD---EVVLLALSLLASICSS 407 (675)
T ss_pred HHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchh---HHHHHHHHHHHHHhcC
Confidence 9999999999999977777999998888888889888 8899999999999933
No 23
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.63 E-value=5e-07 Score=112.72 Aligned_cols=226 Identities=12% Similarity=0.120 Sum_probs=175.5
Q ss_pred HHHHHHHHHHhcCC-CCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhhcCCChHHHH
Q 002658 60 IAIEDLEKTIQTLS-QESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKE 138 (896)
Q Consensus 60 ~Aa~eLD~La~~L~-pd~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrLkDpDs~VR~ 138 (896)
...++|=.+|..|+ |+.+--||..- ..+.-|..|+-|-.-||+|++-.++.+.||+++++|-+.|-=-||+..|++
T Consensus 940 sTYKELc~LASdl~qPdLVYKFM~LA---nh~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~ 1016 (1702)
T KOG0915|consen 940 STYKELCNLASDLGQPDLVYKFMQLA---NHNATWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQD 1016 (1702)
T ss_pred hHHHHHHHHHhhcCChHHHHHHHHHh---hhhchhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHH
Confidence 34678889999886 43344455432 245679999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCC-CCchhHHHHHHHHHHHhcC
Q 002658 139 ACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASD-PPVVAFQKLCARICKLLSN 217 (896)
Q Consensus 139 Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~a~d-~~~~yL~~LlPRL~kLLks 217 (896)
+--..=++|...- +.. .+.++.++++-|+..|.....+|.+++|.||.-++..-+. .+.+.++++-..++...++
T Consensus 1017 aM~sIW~~Li~D~-k~~---vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDD 1092 (1702)
T KOG0915|consen 1017 AMTSIWNALITDS-KKV---VDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDD 1092 (1702)
T ss_pred HHHHHHHHhccCh-HHH---HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHH
Confidence 8887777666442 111 3467889999999999999999999999999999997432 3345677777777777776
Q ss_pred CchhhHHH---HHHHHHHHH-hcc-----ccCcccHHHHHHHHHHh-hCCCCHHHHHHHHHHHHHHHHhcchHHHhhHHH
Q 002658 218 QNFMAKAS---LLPVVGSLS-QVG-----AIAPQSLEPLLQSIHEC-LGSTDWATRKAAADALSALALHSSNLVIDGATS 287 (896)
Q Consensus 218 ~s~kaK~a---lL~aIgSLA-~vg-----a~~~pyle~lLp~L~e~-LsddDW~lRKaA~EaLgsLA~avGe~L~Py~~~ 287 (896)
=+.-+|.+ +..+|+.+. ..+ +.....++.++|+|.+- ..++-.++|+.++-++..|+...|..+.||++.
T Consensus 1093 IKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~ 1172 (1702)
T KOG0915|consen 1093 IKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPK 1172 (1702)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhhH
Confidence 55567765 444555552 222 34567888899998873 337788999999999999999999999999888
Q ss_pred HHHHH
Q 002658 288 TLTVL 292 (896)
Q Consensus 288 ~I~~L 292 (896)
+|..|
T Consensus 1173 LIp~l 1177 (1702)
T KOG0915|consen 1173 LIPLL 1177 (1702)
T ss_pred HHHHH
Confidence 77544
No 24
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.61 E-value=9.9e-07 Score=109.68 Aligned_cols=147 Identities=17% Similarity=0.229 Sum_probs=96.4
Q ss_pred HHhhhcCCCChhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchh
Q 002658 83 CLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTV 162 (896)
Q Consensus 83 ~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~ 162 (896)
.|.+.+.++++.+|+.|+..|+.+. .+.+++.|++.|.|+++.||.+|+.+|+.|.....
T Consensus 625 ~L~~~L~D~d~~VR~~Av~~L~~~~----------~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~---------- 684 (897)
T PRK13800 625 ELAPYLADPDPGVRRTAVAVLTETT----------PPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLP---------- 684 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhhhc----------chhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccC----------
Confidence 3334445888999999999999764 25568889999999999999999999988865441
Q ss_pred HhhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhccccCcc
Q 002658 163 VGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQ 242 (896)
Q Consensus 163 ~~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~a~d~~~~yL~~LlPRL~kLLks~s~kaK~alL~aIgSLA~vga~~~p 242 (896)
-.+.|...|.++++.|+.+|+.+|..+-- .+ ...|+++|++++..+|..++.+++.+-.
T Consensus 685 ---~~~~L~~~L~~~d~~VR~~A~~aL~~~~~--~~---------~~~l~~~L~D~d~~VR~~Av~aL~~~~~------- 743 (897)
T PRK13800 685 ---PAPALRDHLGSPDPVVRAAALDVLRALRA--GD---------AALFAAALGDPDHRVRIEAVRALVSVDD------- 743 (897)
T ss_pred ---chHHHHHHhcCCCHHHHHHHHHHHHhhcc--CC---------HHHHHHHhcCCCHHHHHHHHHHHhcccC-------
Confidence 11345566666788888877777766421 01 1234556677777777666666555310
Q ss_pred cHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 002658 243 SLEPLLQSIHECLGSTDWATRKAAADALSALAL 275 (896)
Q Consensus 243 yle~lLp~L~e~LsddDW~lRKaA~EaLgsLA~ 275 (896)
.+.|..+|.|+++.+|.+|+++|+.+..
T Consensus 744 -----~~~l~~~l~D~~~~VR~~aa~aL~~~~~ 771 (897)
T PRK13800 744 -----VESVAGAATDENREVRIAVAKGLATLGA 771 (897)
T ss_pred -----cHHHHHHhcCCCHHHHHHHHHHHHHhcc
Confidence 0223445666666666666666665543
No 25
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=98.60 E-value=2.6e-07 Score=86.02 Aligned_cols=94 Identities=17% Similarity=0.200 Sum_probs=81.3
Q ss_pred hHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHH
Q 002658 95 VKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAM 174 (896)
Q Consensus 95 vRKeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL 174 (896)
.|+.++..|..++.+.+..+.+|+++|++.|+..+.|+|+.||..||+++..++...-.. .-.++++++..|+..+
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~----~l~~f~~IF~~L~kl~ 77 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGE----ILPYFNEIFDALCKLS 77 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 599999999999999999999999999999999999999999999999999999988322 2245777888888888
Q ss_pred hcCCHhHHHHHHHHHHHHH
Q 002658 175 MEQNKGVQSGAAMCMAKMV 193 (896)
Q Consensus 175 ~Eqnk~VQ~gAasALAkII 193 (896)
.|+++.||.||.. |.+++
T Consensus 78 ~D~d~~Vr~~a~~-Ld~ll 95 (97)
T PF12755_consen 78 ADPDENVRSAAEL-LDRLL 95 (97)
T ss_pred cCCchhHHHHHHH-HHHHh
Confidence 9999999998854 45443
No 26
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.60 E-value=1.3e-06 Score=90.69 Aligned_cols=174 Identities=16% Similarity=0.204 Sum_probs=127.8
Q ss_pred CChhHHHHHHHHHHHHHhcC-CCCCHHHHHH-------HHhhhcCCCChhhHHHHHHHHHHHHHHhcccchhhHHHHHHH
Q 002658 53 ADRDTHQIAIEDLEKTIQTL-SQESLPMLLN-------CLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISH 124 (896)
Q Consensus 53 sDRDT~k~Aa~eLD~La~~L-~pd~Lp~fLs-------~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~ 124 (896)
.|=+.+.-|+..|..++..- +.+..+.|+. .|.....+..+.+-+.|+.+++.++...+..+.||++.++|.
T Consensus 19 ~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~ 98 (228)
T PF12348_consen 19 SDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILLPP 98 (228)
T ss_dssp SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHH
Confidence 56668889999999998754 2233344433 444556778888999999999999999999999999999999
Q ss_pred HHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHhhh-HHHHHHHHhcCCHhHHHHHHHHHHHHHHhcC---CCC
Q 002658 125 IVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLF-VKPLFEAMMEQNKGVQSGAAMCMAKMVECAS---DPP 200 (896)
Q Consensus 125 IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~l-L~pL~eaL~Eqnk~VQ~gAasALAkIIE~a~---d~~ 200 (896)
|++++.|+...||.+|..++..|+.++. ..+.+ +..+...+.+.|+.+...++.+|..+++..+ ...
T Consensus 99 Ll~~~~~~~~~i~~~a~~~L~~i~~~~~---------~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l 169 (228)
T PF12348_consen 99 LLKKLGDSKKFIREAANNALDAIIESCS---------YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVL 169 (228)
T ss_dssp HHHGGG---HHHHHHHHHHHHHHHTTS----------H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG
T ss_pred HHHHHccccHHHHHHHHHHHHHHHHHCC---------cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhh
Confidence 9999999999999999999999999881 12345 6666667788999999999999999999876 211
Q ss_pred c--hhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHh
Q 002658 201 V--VAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQ 235 (896)
Q Consensus 201 ~--~yL~~LlPRL~kLLks~s~kaK~alL~aIgSLA~ 235 (896)
. ..++.+++-+.+++.+++..+|.++-.++..+..
T Consensus 170 ~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~ 206 (228)
T PF12348_consen 170 QKSAFLKQLVKALVKLLSDADPEVREAARECLWALYS 206 (228)
T ss_dssp --HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence 1 2468899999999999999999998888888753
No 27
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=98.57 E-value=4.4e-06 Score=109.24 Aligned_cols=256 Identities=18% Similarity=0.126 Sum_probs=172.7
Q ss_pred CCChhHHHHHHHHHHHHHhc-------C-CCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhccc---chhhHHH
Q 002658 52 LADRDTHQIAIEDLEKTIQT-------L-SQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSEL---TSTHVTK 120 (896)
Q Consensus 52 LsDRDT~k~Aa~eLD~La~~-------L-~pd~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~---I~P~Lpk 120 (896)
..+.|.+..++..|..+... + ....++.|+.+|. +.+...++.++.+|++++.+..+. +.. .-
T Consensus 415 ~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~----s~s~~iQ~~A~~~L~nLa~~ndenr~aIie--aG 488 (2102)
T PLN03200 415 MATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLG----LSSEQQQEYAVALLAILTDEVDESKWAITA--AG 488 (2102)
T ss_pred cCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHc----CCCHHHHHHHHHHHHHHHcCCHHHHHHHHH--CC
Confidence 35678999999888777642 0 1113555555444 567889999999999999866542 222 34
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhH--hhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCC
Q 002658 121 IISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVV--GLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASD 198 (896)
Q Consensus 121 IL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~--~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~a~d 198 (896)
.+|.+++.|..+++.++..|+|+|+.|+.+-.+ ....+ ...+++|++.|...++.+|.-|+.+|..++.....
T Consensus 489 aIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~q-----ir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~ 563 (2102)
T PLN03200 489 GIPPLVQLLETGSQKAKEDSATVLWNLCCHSED-----IRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADA 563 (2102)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHH-----HHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccch
Confidence 678888999999999999999999999863210 01112 24789999999888999999999999999754321
Q ss_pred CCc-hh------------------H-------------------HHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcc-cc
Q 002658 199 PPV-VA------------------F-------------------QKLCARICKLLSNQNFMAKASLLPVVGSLSQVG-AI 239 (896)
Q Consensus 199 ~~~-~y------------------L-------------------~~LlPRL~kLLks~s~kaK~alL~aIgSLA~vg-a~ 239 (896)
... ++ | +.-+|.|..+|++++...|..+..+|..++... ..
T Consensus 564 ~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~ 643 (2102)
T PLN03200 564 ATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDL 643 (2102)
T ss_pred hHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHH
Confidence 100 00 0 124677788888877777777777777775422 11
Q ss_pred -CcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcc-hHHHhh-HHHHHHHHHhhhcCCChhhHHHHHHHHHHHHH
Q 002658 240 -APQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSS-NLVIDG-ATSTLTVLEACRFDKIKPVRDSMNEALQLWKK 316 (896)
Q Consensus 240 -~~pyle~lLp~L~e~LsddDW~lRKaA~EaLgsLA~avG-e~L~Py-~~~~I~~LE~~RfDKvKpVRDaA~eALe~WK~ 316 (896)
-.-.....+|+|...|.+.+..+|+.|+-+|+.++.... +...-+ ...+|..|-...-+.+..+++.+.+||...-.
T Consensus 644 ~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~ 723 (2102)
T PLN03200 644 CESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLS 723 (2102)
T ss_pred HHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHc
Confidence 112334567889999999999999999999999997444 222222 23456666555556776677777666666544
Q ss_pred hc
Q 002658 317 IA 318 (896)
Q Consensus 317 la 318 (896)
-+
T Consensus 724 ~~ 725 (2102)
T PLN03200 724 DP 725 (2102)
T ss_pred Cc
Confidence 33
No 28
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=98.52 E-value=9.7e-06 Score=94.99 Aligned_cols=262 Identities=16% Similarity=0.224 Sum_probs=179.5
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHHHhcCCCCC-HHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccchhhH--HHH
Q 002658 45 ILTSLSKLADRDTHQIAIEDLEKTIQTLSQES-LPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHV--TKI 121 (896)
Q Consensus 45 ll~~L~KLsDRDT~k~Aa~eLD~La~~L~pd~-Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I~P~L--pkI 121 (896)
+..||+. .+++....+..-|+++...+.+.. ++.+.+.|..-+.++++.+|+-++..++.+++.. +....-+ +.+
T Consensus 43 lf~~L~~-~~~e~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~-~~~~~~~~~~~l 120 (503)
T PF10508_consen 43 LFDCLNT-SNREQVELICDILKRLLSALSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHS-EGAAQLLVDNEL 120 (503)
T ss_pred HHHHHhh-cChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCC-HHHHHHhcCccH
Confidence 4555653 478888999999999999887766 8889999999999999999999999999988643 3322222 567
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHh-hhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCC
Q 002658 122 ISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVG-LFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPP 200 (896)
Q Consensus 122 L~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~-~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~a~d~~ 200 (896)
++.|+..|.|+|..|..+|..+|..|+.+- .+. ...++ .++..|...+...+..+..-+..++..+....++.
T Consensus 121 ~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~--~~~---~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~- 194 (503)
T PF10508_consen 121 LPLIIQCLRDPDLSVAKAAIKALKKLASHP--EGL---EQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEA- 194 (503)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHHhCCc--hhH---HHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHH-
Confidence 999999999999999999999999998743 110 01111 12455555555557777777777766666543322
Q ss_pred chhHHH--HHHHHHHHhcCCchhhHHHHHHHHHHHHhccccCcccHH--HHHHHHHHhhCCC--CH---HHH-HHHHHHH
Q 002658 201 VVAFQK--LCARICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLE--PLLQSIHECLGST--DW---ATR-KAAADAL 270 (896)
Q Consensus 201 ~~yL~~--LlPRL~kLLks~s~kaK~alL~aIgSLA~vga~~~pyle--~lLp~L~e~Lsdd--DW---~lR-KaA~EaL 270 (896)
..++.. +++.+++.|++.+.-+|..+++++..++... ....|+. .+++.|.+.+.+. |. .+. -..+..+
T Consensus 195 ~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~-~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~ 273 (503)
T PF10508_consen 195 AEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETP-HGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFF 273 (503)
T ss_pred HHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcCh-hHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHH
Confidence 244444 8999999999999999999999999997521 1122222 2455555555431 22 111 2233566
Q ss_pred HHHHHhcchHHHhhHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHhc
Q 002658 271 SALALHSSNLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQLWKKIA 318 (896)
Q Consensus 271 gsLA~avGe~L~Py~~~~I~~LE~~RfDKvKpVRDaA~eALe~WK~la 318 (896)
+.|+...+..+....+.++..+..+-...+...+.+ |++.|..|+
T Consensus 274 g~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~---A~dtlg~ig 318 (503)
T PF10508_consen 274 GNLARVSPQEVLELYPAFLERLFSMLESQDPTIREV---AFDTLGQIG 318 (503)
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHHhCCCChhHHHH---HHHHHHHHh
Confidence 778877554444445667777766655667767777 677777777
No 29
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=98.51 E-value=9.4e-06 Score=106.30 Aligned_cols=256 Identities=15% Similarity=0.194 Sum_probs=184.6
Q ss_pred CChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhccc-chhh---HHHHHHHHHHh
Q 002658 53 ADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSEL-TSTH---VTKIISHIVKR 128 (896)
Q Consensus 53 sDRDT~k~Aa~eLD~La~~L~pd~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~-I~P~---LpkIL~~Ilrr 128 (896)
+|.++++.|+..|-.++..-+++.++.++..|. ++++..+..++.+||.+....... +... -...++.|+..
T Consensus 542 gd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLl----sdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~L 617 (2102)
T PLN03200 542 GGPKGQEIAAKTLTKLVRTADAATISQLTALLL----GDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQL 617 (2102)
T ss_pred CCHHHHHHHHHHHHHHHhccchhHHHHHHHHhc----CCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHH
Confidence 678899999999999987655556777665543 556788888999999997744432 1111 13578899999
Q ss_pred hcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCC-CchhHHH-
Q 002658 129 LKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDP-PVVAFQK- 206 (896)
Q Consensus 129 LkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~a~d~-~~~yL~~- 206 (896)
|+.++..++..|+|+|..|+..-.+.. ..-.....++||+..|...+..++..||.||..+..+.... ...++..
T Consensus 618 L~sgs~~ikk~Aa~iLsnL~a~~~d~~---~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~G 694 (2102)
T PLN03200 618 LSSSKEETQEKAASVLADIFSSRQDLC---ESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAED 694 (2102)
T ss_pred HcCCCHHHHHHHHHHHHHHhcCChHHH---HHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcC
Confidence 999999999999999999986331110 01223457899999999889999999999999999754332 2234443
Q ss_pred HHHHHHHHhcCCchhhHHHHHHHHHHHHhccccC-cccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcc--hHHHh
Q 002658 207 LCARICKLLSNQNFMAKASLLPVVGSLSQVGAIA-PQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSS--NLVID 283 (896)
Q Consensus 207 LlPRL~kLLks~s~kaK~alL~aIgSLA~vga~~-~pyle~lLp~L~e~LsddDW~lRKaA~EaLgsLA~avG--e~L~P 283 (896)
.+|.|+++|++.+..++..++.+|..++..+... .-.-...++.|.++|.+.+...|+.|+-+|..|+...+ +.|..
T Consensus 695 aV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~ 774 (2102)
T PLN03200 695 AIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKD 774 (2102)
T ss_pred CHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHH
Confidence 7899999999999999999999999998654111 11123458999999999999999999999999999988 44766
Q ss_pred hHHHH------HHHHHhhhcCCChhhHHHHHHHHHHHHHhccC
Q 002658 284 GATST------LTVLEACRFDKIKPVRDSMNEALQLWKKIAGK 320 (896)
Q Consensus 284 y~~~~------I~~LE~~RfDKvKpVRDaA~eALe~WK~la~~ 320 (896)
|+..+ +.+|..-.+|.+. ..+||+....++..
T Consensus 775 ~~~~~g~v~~l~~~L~~~~~~~~~-----~~~al~~l~~l~~~ 812 (2102)
T PLN03200 775 SVQCRGTVLALVDLLNSTDLDSSA-----TSEALEALALLART 812 (2102)
T ss_pred HHHHhCcHHHHHHHHhcCCcchhh-----HHHHHHHHHHHHhh
Confidence 65444 4444444444322 23566666666654
No 30
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=98.48 E-value=1.1e-07 Score=78.17 Aligned_cols=55 Identities=22% Similarity=0.401 Sum_probs=53.1
Q ss_pred hhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHH
Q 002658 93 PAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSL 147 (896)
Q Consensus 93 ~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~L 147 (896)
|.+|+.|+.+||.+++.+++.+.||++++++.++..|+|+++.||.+|+++||+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 7899999999999999999999999999999999999999999999999999975
No 31
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.47 E-value=3.6e-05 Score=93.26 Aligned_cols=238 Identities=13% Similarity=0.151 Sum_probs=184.3
Q ss_pred HHHHHHHHhhhc--CCCChhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcc
Q 002658 77 LPMLLNCLYESS--NDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNG 154 (896)
Q Consensus 77 Lp~fLs~L~es~--ss~k~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~ 154 (896)
++.|++.+.+.+ +.+...+|=+++-.++-+...+|+.+.++=..|+-+++..|.-+...||.-++.+||.++..+-
T Consensus 129 ~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~-- 206 (1233)
T KOG1824|consen 129 CKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCN-- 206 (1233)
T ss_pred HHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcC--
Confidence 556666666554 3455668889999999999999999999999999999999999999999999999999999982
Q ss_pred cccCCchhHhhhHHHHHHHHhcCCHhHH-HHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHh---cCCchhhHHHHHHHH
Q 002658 155 KEENNGTVVGLFVKPLFEAMMEQNKGVQ-SGAAMCMAKMVECASDPPVVAFQKLCARICKLL---SNQNFMAKASLLPVV 230 (896)
Q Consensus 155 ~~e~~~~~~~~lL~pL~eaL~Eqnk~VQ-~gAasALAkIIE~a~d~~~~yL~~LlPRL~kLL---ks~s~kaK~alL~aI 230 (896)
...+..+..-|+..|.......+ -.-..||+.+|..++.....++++++|-+.... +..+-..|+.+|.++
T Consensus 207 -----~~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQal 281 (1233)
T KOG1824|consen 207 -----RDLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQAL 281 (1233)
T ss_pred -----HHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhhcccchhhHHHHHHhcccccCcHHHHHHHHHHH
Confidence 24566777777777754433333 457889999999998888889999999999888 667788999999999
Q ss_pred HHHHhcc-ccCcccHHHHHHHHHHhhC-------------------C-------------C--CHHHHHHHHHHHHHHHH
Q 002658 231 GSLSQVG-AIAPQSLEPLLQSIHECLG-------------------S-------------T--DWATRKAAADALSALAL 275 (896)
Q Consensus 231 gSLA~vg-a~~~pyle~lLp~L~e~Ls-------------------d-------------d--DW~lRKaA~EaLgsLA~ 275 (896)
+++..-. ....||.+.++..+.++++ + + .|-+|++|+.||.++-.
T Consensus 282 e~fl~rcp~ei~p~~pei~~l~l~yisYDPNy~yd~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~Is 361 (1233)
T KOG1824|consen 282 ESFLRRCPKEILPHVPEIINLCLSYISYDPNYNYDTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVIS 361 (1233)
T ss_pred HHHHHhChhhhcccchHHHHHHHHHhccCCCCCCCCccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHh
Confidence 9997544 4567888888888777641 0 0 39999999999999999
Q ss_pred hcchHHHhhHHHHHHHHHhhhcCCChhhHHHHHHH-HHHHHHhccCC
Q 002658 276 HSSNLVIDGATSTLTVLEACRFDKIKPVRDSMNEA-LQLWKKIAGKV 321 (896)
Q Consensus 276 avGe~L~Py~~~~I~~LE~~RfDKvKpVRDaA~eA-Le~WK~la~~~ 321 (896)
...+.+..+.+.+-.++-..-.+.-+.||--+.++ +.+++.++.+-
T Consensus 362 SR~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~~ 408 (1233)
T KOG1824|consen 362 SRLEMLPDFYQTLGPALISRFKEREENVKADVFHAYIALLKQTRPVI 408 (1233)
T ss_pred ccHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCc
Confidence 88888887776666665544445556677555555 45566666553
No 32
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=98.44 E-value=2.6e-05 Score=89.15 Aligned_cols=224 Identities=14% Similarity=0.184 Sum_probs=168.3
Q ss_pred hHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhcCCCCC-HHHHHHHHhhhc-CCCChhhHHHHHHHHHHHHHHhcccc
Q 002658 37 AMVEMKQKILTSLSKLADRDTHQIAIEDLEKTIQTLSQES-LPMLLNCLYESS-NDPKPAVKKESVRLLALVCELHSELT 114 (896)
Q Consensus 37 ~~~~Lk~rll~~L~KLsDRDT~k~Aa~eLD~La~~L~pd~-Lp~fLs~L~es~-ss~k~~vRKeAIllLG~IAeg~~d~I 114 (896)
.+.++.++++.......+...+..+.+.|-.+++.++.+. +..+|..+.... .......|..++.++.-++.+.--.-
T Consensus 186 ~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~ 265 (415)
T PF12460_consen 186 DLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRG 265 (415)
T ss_pred CHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcC
Confidence 5566888888888888888888888999999998876544 778888887766 55667788888888877777766555
Q ss_pred hhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhcCCHhHHHHHHHHHHHHHH
Q 002658 115 STHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVE 194 (896)
Q Consensus 115 ~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE 194 (896)
.|.-.+++..++..|.| +.+...++.+++.|.... +... ...+...+++|+.
T Consensus 266 ~~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~-~~~l---~~~~~a~vklLyk---------------------- 317 (415)
T PF12460_consen 266 HPLATELLDKLLELLSS--PELGQQAAKAFGILLSDS-DDVL---NKENHANVKLLYK---------------------- 317 (415)
T ss_pred CchHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCc-HHhc---CccccchhhhHHh----------------------
Confidence 56666777778888877 556666776666666553 1100 0001111111111
Q ss_pred hcCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHh-cc-ccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 002658 195 CASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQ-VG-AIAPQSLEPLLQSIHECLGSTDWATRKAAADALSA 272 (896)
Q Consensus 195 ~a~d~~~~yL~~LlPRL~kLLks~s~kaK~alL~aIgSLA~-vg-a~~~pyle~lLp~L~e~LsddDW~lRKaA~EaLgs 272 (896)
.-++..++|+|+..++..+...|...|.++..+.. +- ....++++.++|.|++.|+.+|..+|.+++++|..
T Consensus 318 ------QR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~ 391 (415)
T PF12460_consen 318 ------QRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKM 391 (415)
T ss_pred ------HHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 13577889999999988766688888989988864 33 56789999999999999999999999999999999
Q ss_pred HHHhcchHHHhhHHHHHHHHHh
Q 002658 273 LALHSSNLVIDGATSTLTVLEA 294 (896)
Q Consensus 273 LA~avGe~L~Py~~~~I~~LE~ 294 (896)
+...-++.+.+|+..+|..|..
T Consensus 392 ~l~~~~~~i~~hl~sLI~~LL~ 413 (415)
T PF12460_consen 392 ILEEAPELISEHLSSLIPRLLK 413 (415)
T ss_pred HHHcCHHHHHHHHHHHHHHHHh
Confidence 9999999999999999987753
No 33
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=98.43 E-value=3.6e-05 Score=89.33 Aligned_cols=272 Identities=17% Similarity=0.180 Sum_probs=191.2
Q ss_pred hHhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhc-CCCCCHHHHHHHHhhhc-CCCChhhHHHHHHHHHHHHHHhc-
Q 002658 35 HLAMVEMKQKILTSLSKLADRDTHQIAIEDLEKTIQT-LSQESLPMLLNCLYESS-NDPKPAVKKESVRLLALVCELHS- 111 (896)
Q Consensus 35 ~~~~~~Lk~rll~~L~KLsDRDT~k~Aa~eLD~La~~-L~pd~Lp~fLs~L~es~-ss~k~~vRKeAIllLG~IAeg~~- 111 (896)
|+.--+.|-..++.|... ......+|++.|-.|+.. |+....|.|+..+.... ..+....+.+++..+|++++...
T Consensus 89 ~E~k~qvK~~al~aL~s~-epr~~~~Aaql~aaIA~~Elp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~P 167 (858)
T COG5215 89 HESKEQVKGMALRALKSP-EPRFCTMAAQLLAAIARMELPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAP 167 (858)
T ss_pred HHHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHHHhhCccccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCH
Confidence 344444555555555433 344778889999999964 77778999999888765 44556688999999999999765
Q ss_pred ccchhhHHHHHHHHHHh-hcC-CChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhcCCHhHHHHHHHHH
Q 002658 112 ELTSTHVTKIISHIVKR-LKD-SDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCM 189 (896)
Q Consensus 112 d~I~P~LpkIL~~Ilrr-LkD-pDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasAL 189 (896)
+.+...-.-|+-.|+.+ ++. +++.||-|+..++..-...+ +..+. .+....-|+....++-..++..+|.+|+.||
T Consensus 168 e~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv-~~nf~-~E~erNy~mqvvceatq~~d~e~q~aafgCl 245 (858)
T COG5215 168 EDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFV-QGNFC-YEEERNYFMQVVCEATQGNDEELQHAAFGCL 245 (858)
T ss_pred HHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHH-HHhhc-chhhhchhheeeehhccCCcHHHHHHHHHHH
Confidence 34544455555555555 554 67899999888877633333 22111 1123455677777777888999999999999
Q ss_pred HHHHHhcCCCCchhHHH-HHHHHHHHhcCCchhhHHHHHHHHHHHHh----cc---ccCc-----------ccHHHHHHH
Q 002658 190 AKMVECASDPPVVAFQK-LCARICKLLSNQNFMAKASLLPVVGSLSQ----VG---AIAP-----------QSLEPLLQS 250 (896)
Q Consensus 190 AkIIE~a~d~~~~yL~~-LlPRL~kLLks~s~kaK~alL~aIgSLA~----vg---a~~~-----------pyle~lLp~ 250 (896)
-++.----+.+.+|+++ |...+...+++++.+++..++..-+++.. ++ ..++ ..+..++|.
T Consensus 246 ~kim~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~ 325 (858)
T COG5215 246 NKIMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPE 325 (858)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHH
Confidence 99986444444577776 45566677799999999888888877642 11 1122 225568899
Q ss_pred HHHhhCC-------CCHHHHHHHHHHHHHHHHhcchHHHhhHHHHHHHHHhhhcCCChhhHHHHHHHHH
Q 002658 251 IHECLGS-------TDWATRKAAADALSALALHSSNLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQ 312 (896)
Q Consensus 251 L~e~Lsd-------dDW~lRKaA~EaLgsLA~avGe~L~Py~~~~I~~LE~~RfDKvKpVRDaA~eALe 312 (896)
|+..|.. +||..-++|.-||.-.|...|+++. .+++...|..-....-.-||++.-|+.
T Consensus 326 lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd~i~---~pVl~FvEqni~~~~w~nreaavmAfG 391 (858)
T COG5215 326 LLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGDKIM---RPVLGFVEQNIRSESWANREAAVMAFG 391 (858)
T ss_pred HHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhhHhH---HHHHHHHHHhccCchhhhHHHHHHHhh
Confidence 9988754 6899999999999999999998654 457888886666667778888655543
No 34
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.43 E-value=3.6e-06 Score=97.81 Aligned_cols=262 Identities=16% Similarity=0.115 Sum_probs=182.2
Q ss_pred CChhHHHHHHHHHHHHHhcC--------CCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhc-ccchhhHHHHHH
Q 002658 53 ADRDTHQIAIEDLEKTIQTL--------SQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHS-ELTSTHVTKIIS 123 (896)
Q Consensus 53 sDRDT~k~Aa~eLD~La~~L--------~pd~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~-d~I~P~LpkIL~ 123 (896)
.+.+.+.+|+-.|-.++..= ....+.++|..|.... +-...+.+.-+|.++|++.. -.....+..++|
T Consensus 164 ~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~---~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp 240 (514)
T KOG0166|consen 164 PSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSD---KLSMLRNATWTLSNLCRGKNPSPPFDVVAPILP 240 (514)
T ss_pred CcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhcccc---chHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHH
Confidence 45668888888887777531 2334667777666433 23567788899999999874 334567999999
Q ss_pred HHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCchh
Q 002658 124 HIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVA 203 (896)
Q Consensus 124 ~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~a~d~~~~y 203 (896)
.|.+.|.+.|+.|..=+||+|+-|+..--+.. ..-.-..+++.|.+.|......|+..|..++-.|+-+.+.+....
T Consensus 241 ~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~i---q~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~v 317 (514)
T KOG0166|consen 241 ALLRLLHSTDEEVLTDACWALSYLTDGSNEKI---QMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVV 317 (514)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhcCChHHH---HHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHH
Confidence 99999999999999999999998875441110 001223478899999999999999888888888776655544444
Q ss_pred HH-HHHHHHHHHhc-CCchhhHHHHHHHHHHHHhcc--ccCcccHH-HHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcc
Q 002658 204 FQ-KLCARICKLLS-NQNFMAKASLLPVVGSLSQVG--AIAPQSLE-PLLQSIHECLGSTDWATRKAAADALSALALHSS 278 (896)
Q Consensus 204 L~-~LlPRL~kLLk-s~s~kaK~alL~aIgSLA~vg--a~~~pyle-~lLp~L~e~LsddDW~lRKaA~EaLgsLA~avG 278 (896)
++ .++|.|..+|. ++.-++|..+.=.|+=|. +| ......++ .++|.|..+|+..+..+||.|+=+++.++..--
T Consensus 318 i~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNIt-AG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~ 396 (514)
T KOG0166|consen 318 INSGALPVLSNLLSSSPKESIKKEACWTISNIT-AGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGT 396 (514)
T ss_pred HhcChHHHHHHHhccCcchhHHHHHHHHHHHhh-cCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCC
Confidence 44 58899999998 565555553333444432 23 22222222 688999999999999999999999999887766
Q ss_pred hHHHhhH--HHHHHHHHhhhcCCChhhHHHHHHHHHHHHHhccCC
Q 002658 279 NLVIDGA--TSTLTVLEACRFDKIKPVRDSMNEALQLWKKIAGKV 321 (896)
Q Consensus 279 e~L~Py~--~~~I~~LE~~RfDKvKpVRDaA~eALe~WK~la~~~ 321 (896)
..-..|+ ..||+.|.....=++..+-.+++.+|+....++..+
T Consensus 397 ~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~ 441 (514)
T KOG0166|consen 397 PEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGEAE 441 (514)
T ss_pred HHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHHh
Confidence 6566675 456776654443333333467888888888887553
No 35
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=98.42 E-value=1.7e-05 Score=92.90 Aligned_cols=169 Identities=13% Similarity=0.185 Sum_probs=125.8
Q ss_pred HHHHHHHHHHHHHhcccchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhc
Q 002658 97 KESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMME 176 (896)
Q Consensus 97 KeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~E 176 (896)
..++.+|+.+..... +..-++.+.+++.++|..|++.||.-|++.|++++.+-.... + --.-..+++.++.+|.+
T Consensus 56 ~~~~~iL~~~l~~~~--~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~-~--~~~~~~l~~~i~~~L~~ 130 (503)
T PF10508_consen 56 ELICDILKRLLSALS--PDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAA-Q--LLVDNELLPLIIQCLRD 130 (503)
T ss_pred HHHHHHHHHHHhccC--HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHH-H--HhcCccHHHHHHHHHcC
Confidence 344445555444322 222388999999999999999999999999998875431100 0 00124578899999999
Q ss_pred CCHhHHHHHHHHHHHHHHhcCCCCchhHHHH-----HHHHHHHhcCCchhhHHHHHHHHHHHHhccccCcccHHH--HHH
Q 002658 177 QNKGVQSGAAMCMAKMVECASDPPVVAFQKL-----CARICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEP--LLQ 249 (896)
Q Consensus 177 qnk~VQ~gAasALAkIIE~a~d~~~~yL~~L-----lPRL~kLLks~s~kaK~alL~aIgSLA~vga~~~pyle~--lLp 249 (896)
.+..|...|+.+|.++.... ++++.| ++.|..++.+.+..+|.-+|+++..++........++.. +++
T Consensus 131 ~d~~Va~~A~~~L~~l~~~~-----~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~ 205 (503)
T PF10508_consen 131 PDLSVAKAAIKALKKLASHP-----EGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLD 205 (503)
T ss_pred CcHHHHHHHHHHHHHHhCCc-----hhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHH
Confidence 99999999999999999642 233334 888999998867777777899888887655322334443 888
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHHHH
Q 002658 250 SIHECLGSTDWATRKAAADALSALAL 275 (896)
Q Consensus 250 ~L~e~LsddDW~lRKaA~EaLgsLA~ 275 (896)
.++..|.++|--+|..|+|+|+.||.
T Consensus 206 ~ll~eL~~dDiLvqlnalell~~La~ 231 (503)
T PF10508_consen 206 LLLKELDSDDILVQLNALELLSELAE 231 (503)
T ss_pred HHHHHhcCccHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999
No 36
>PTZ00429 beta-adaptin; Provisional
Probab=98.40 E-value=0.00011 Score=90.04 Aligned_cols=240 Identities=16% Similarity=0.161 Sum_probs=148.1
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhhcCCChHH
Q 002658 57 THQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGM 136 (896)
Q Consensus 57 T~k~Aa~eLD~La~~L~pd~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrLkDpDs~V 136 (896)
.+|+..--|..++.. .|+..-..++.|.....++++.+|--|++.|+.+ .+...++.++..|.+.|.|++|.|
T Consensus 84 lKKLvYLYL~~ya~~-~pelalLaINtl~KDl~d~Np~IRaLALRtLs~I------r~~~i~e~l~~~lkk~L~D~~pYV 156 (746)
T PTZ00429 84 LKKLVYLYVLSTARL-QPEKALLAVNTFLQDTTNSSPVVRALAVRTMMCI------RVSSVLEYTLEPLRRAVADPDPYV 156 (746)
T ss_pred HHHHHHHHHHHHccc-ChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcC------CcHHHHHHHHHHHHHHhcCCCHHH
Confidence 444444444444331 2332323345555555566666666666655432 234456778999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhc
Q 002658 137 KEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLS 216 (896)
Q Consensus 137 R~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~a~d~~~~yL~~LlPRL~kLLk 216 (896)
|.+|+-++..+.....+-. .-..+++.|.+.|.|+++.|+..|+.+|..+++..++. .......+.+|+..|.
T Consensus 157 RKtAalai~Kly~~~pelv------~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~-l~l~~~~~~~Ll~~L~ 229 (746)
T PTZ00429 157 RKTAAMGLGKLFHDDMQLF------YQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEK-IESSNEWVNRLVYHLP 229 (746)
T ss_pred HHHHHHHHHHHHhhCcccc------cccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchh-hHHHHHHHHHHHHHhh
Confidence 9999999999866441110 01236677888889999999999999999999865543 2445566777777776
Q ss_pred CCchhhHHHHHHHHHHHHhccccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcc-hHHHhhHHHHHHHHHhh
Q 002658 217 NQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSS-NLVIDGATSTLTVLEAC 295 (896)
Q Consensus 217 s~s~kaK~alL~aIgSLA~vga~~~pyle~lLp~L~e~LsddDW~lRKaA~EaLgsLA~avG-e~L~Py~~~~I~~LE~~ 295 (896)
.-+.-.+..+|+++.... .....-...+|..+..+|.+.+..+--.|+.++..+..... +.+......+...+-..
T Consensus 230 e~~EW~Qi~IL~lL~~y~---P~~~~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~rl~~pLv~L 306 (746)
T PTZ00429 230 ECNEWGQLYILELLAAQR---PSDKESAETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCTVRVNTALLTL 306 (746)
T ss_pred cCChHHHHHHHHHHHhcC---CCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHHHh
Confidence 545545556677664421 11223356788888888888888898888888888775543 32222222222222222
Q ss_pred hcCCChhhHHHHHHHHHHH
Q 002658 296 RFDKIKPVRDSMNEALQLW 314 (896)
Q Consensus 296 RfDKvKpVRDaA~eALe~W 314 (896)
..+...+|=++++.+...
T Consensus 307 -~ss~~eiqyvaLr~I~~i 324 (746)
T PTZ00429 307 -SRRDAETQYIVCKNIHAL 324 (746)
T ss_pred -hCCCccHHHHHHHHHHHH
Confidence 223444555555555433
No 37
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.39 E-value=6.3e-05 Score=93.22 Aligned_cols=250 Identities=13% Similarity=0.153 Sum_probs=194.5
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHHHhc-----CCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccchhhHH
Q 002658 45 ILTSLSKLADRDTHQIAIEDLEKTIQT-----LSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVT 119 (896)
Q Consensus 45 ll~~L~KLsDRDT~k~Aa~eLD~La~~-----L~pd~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I~P~Lp 119 (896)
+..-+.+-++.-+|+-+.+-|+.+... +....+.-+.+.|.+.+++.....|+..+.+|..+.+.|+......++
T Consensus 658 v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~ 737 (1176)
T KOG1248|consen 658 VDPEFENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIP 737 (1176)
T ss_pred hhHHhhccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 333344445677999999999999876 222236667778888888889999999999999999999977777889
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHHHHHHH--HHHhcccccCCchhHhhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhc-
Q 002658 120 KIISHIVKRLKDSDSGMKEACRDSIGSLS--KLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECA- 196 (896)
Q Consensus 120 kIL~~IlrrLkDpDs~VR~Ac~~aLG~LA--~~li~~~~e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~a- 196 (896)
+.|+-++=.+++-+-.-|+.+-.+|-.|. ...++.+.+.....+..|+..|.+.+......+-.....|+..++..-
T Consensus 738 k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~ 817 (1176)
T KOG1248|consen 738 KLIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFK 817 (1176)
T ss_pred HHHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHh
Confidence 99998888889998877777777665555 333344433335688899999999886555555555477888888664
Q ss_pred CCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcc--ccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 002658 197 SDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVG--AIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALA 274 (896)
Q Consensus 197 ~d~~~~yL~~LlPRL~kLLks~s~kaK~alL~aIgSLA~vg--a~~~pyle~lLp~L~e~LsddDW~lRKaA~EaLgsLA 274 (896)
.....+++++|+..++-.|.+.+.++..+++..|..++..- ....+|++.+||.++..+.+..-.+|+.+--.|-.|.
T Consensus 818 ~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLi 897 (1176)
T KOG1248|consen 818 NILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLI 897 (1176)
T ss_pred ccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 44556899999999999999999998888898888887532 4578999999999999888888899999999999999
Q ss_pred Hhcc-hHHHhhHHHH-HHHHHh
Q 002658 275 LHSS-NLVIDGATST-LTVLEA 294 (896)
Q Consensus 275 ~avG-e~L~Py~~~~-I~~LE~ 294 (896)
.-.| +.+.+|++.. .+.|.+
T Consensus 898 rkfg~~eLe~~~pee~~klL~n 919 (1176)
T KOG1248|consen 898 RKFGAEELESFLPEEDMKLLTN 919 (1176)
T ss_pred HHhCHHHHHhhCHHHHHHHHHH
Confidence 9999 8888887644 334443
No 38
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=98.39 E-value=1.3e-05 Score=98.14 Aligned_cols=200 Identities=16% Similarity=0.164 Sum_probs=169.3
Q ss_pred HHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhc-ccchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhccc
Q 002658 77 LPMLLNCLYESSNDPKPAVKKESVRLLALVCELHS-ELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGK 155 (896)
Q Consensus 77 Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~-d~I~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~ 155 (896)
++.+-..+...+.+.+|..|++|+..|..+.+-.. +....|..-+...+-.+++|.+..|-..+...|..|+..+ ...
T Consensus 251 ~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~l-r~~ 329 (815)
T KOG1820|consen 251 LSKITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKL-RPL 329 (815)
T ss_pred hhhcChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhc-chh
Confidence 66666677777889999999999999999998777 5677888888889999999999999999999999999988 322
Q ss_pred ccCCchhHhhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHh
Q 002658 156 EENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQ 235 (896)
Q Consensus 156 ~e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~a~d~~~~yL~~LlPRL~kLLks~s~kaK~alL~aIgSLA~ 235 (896)
+ ..+...+++.||+.+.+....+-.++..|+.++++. -.|..+.+-++.++++.+.++|.-+...++....
T Consensus 330 ~---~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns------~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~ 400 (815)
T KOG1820|consen 330 F---RKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNS------TPLSKMSEAILEALKGKNPQIKGECLLLLDRKLR 400 (815)
T ss_pred h---HHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhc------ccHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHh
Confidence 2 356677889999999999999999999999999983 2367899999999999999999998888887754
Q ss_pred -ccc--cCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcc-hHHHhhHH
Q 002658 236 -VGA--IAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSS-NLVIDGAT 286 (896)
Q Consensus 236 -vga--~~~pyle~lLp~L~e~LsddDW~lRKaA~EaLgsLA~avG-e~L~Py~~ 286 (896)
.+. .+..-+..++|.+.....|.+.++|++|.++++.|...+| +.|.-|+.
T Consensus 401 ~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~~~k~L~ 455 (815)
T KOG1820|consen 401 KLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEEVFKKLLK 455 (815)
T ss_pred hcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 342 3567788899999999999999999999999999999999 44444433
No 39
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=98.30 E-value=4.6e-06 Score=77.70 Aligned_cols=84 Identities=17% Similarity=0.198 Sum_probs=73.8
Q ss_pred HHHHHHHHHHH-hccccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcchHHHhhHHHHHHHHHhhhcCCChh
Q 002658 224 ASLLPVVGSLS-QVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSSNLVIDGATSTLTVLEACRFDKIKP 302 (896)
Q Consensus 224 ~alL~aIgSLA-~vga~~~pyle~lLp~L~e~LsddDW~lRKaA~EaLgsLA~avGe~L~Py~~~~I~~LE~~RfDKvKp 302 (896)
...|-++.+++ +.+.....|++.+||+++.++.|+||.+|-.|||+|+.|+...++.+.+|+..+..+|-..-.|.++.
T Consensus 4 ~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~ 83 (97)
T PF12755_consen 4 KGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDEN 83 (97)
T ss_pred hHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchh
Confidence 34455555553 45556889999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHH
Q 002658 303 VRDSM 307 (896)
Q Consensus 303 VRDaA 307 (896)
||..|
T Consensus 84 Vr~~a 88 (97)
T PF12755_consen 84 VRSAA 88 (97)
T ss_pred HHHHH
Confidence 99875
No 40
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.29 E-value=9.7e-05 Score=85.01 Aligned_cols=259 Identities=17% Similarity=0.217 Sum_probs=193.1
Q ss_pred HcCCChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccch---hhHHHHHHHHH
Q 002658 50 SKLADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTS---THVTKIISHIV 126 (896)
Q Consensus 50 ~KLsDRDT~k~Aa~eLD~La~~L~pd~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I~---P~LpkIL~~Il 126 (896)
..++|.++++.++..|...+..-.+-.++-+|..+...+.+.+|..|-..+- .+++.-+..+. +-|..++-.+.
T Consensus 188 ~qls~~~~h~~g~trlqr~m~~~~~~~~~~il~q~~ss~ts~~~~~ritd~A---f~ael~~~~~l~~~~lL~s~~~~la 264 (533)
T KOG2032|consen 188 SQLSDNDIHRVGLTRLQRFMACVQDLEMGKILAQLLSSITSEKENGRITDIA---FFAELKRPKELDKTGLLGSVLLSLA 264 (533)
T ss_pred hhcccCcccHHHHHHHHHHHHhhCCccHHHHHhhcccccchhcccchHHHHH---HHHHHhCcccccccccHHHHHHHHH
Confidence 3457889999999999988876655468888888888888888877765544 45555555533 56888888999
Q ss_pred HhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHH-hcCCHhHHHHHHHHHHHHHHhc-CCCCchhH
Q 002658 127 KRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAM-MEQNKGVQSGAAMCMAKMVECA-SDPPVVAF 204 (896)
Q Consensus 127 rrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL-~Eqnk~VQ~gAasALAkIIE~a-~d~~~~yL 204 (896)
.+..||+..+|.-|+..||..++.+.+. ...+.+.++..++..| +..|+.||--|..||..+.|-. .+...+|+
T Consensus 265 ~ka~dp~a~~r~~a~r~L~~~as~~P~k----v~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~ 340 (533)
T KOG2032|consen 265 NKATDPSAKSRGMACRGLGNTASGAPDK----VRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYL 340 (533)
T ss_pred HhccCchhHHHHHHHHHHHHHhccCcHH----HHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhc
Confidence 9999999999999999999999886332 3466788888888888 4568999999999999999986 55667899
Q ss_pred HHHHHHHHHHhcCCchhhHHHHHHHHHHHHh-cc---c-cCc------------------c-------------------
Q 002658 205 QKLCARICKLLSNQNFMAKASLLPVVGSLSQ-VG---A-IAP------------------Q------------------- 242 (896)
Q Consensus 205 ~~LlPRL~kLLks~s~kaK~alL~aIgSLA~-vg---a-~~~------------------p------------------- 242 (896)
-.+.-|+..++++-..++|.+++.+.|.++. .| . .|. |
T Consensus 341 l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~ACr~~~~~c~p~l~r 420 (533)
T KOG2032|consen 341 LNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVARACRSELRTCYPNLVR 420 (533)
T ss_pred hhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHHHHHHHHHhcCchhHH
Confidence 9999999999999999999988888888863 22 1 111 1
Q ss_pred -----cHH----HHHHHH---------------HH---h-h------CCCCH-HHHHHHHHHHHHHHHhcchHHHhhH--
Q 002658 243 -----SLE----PLLQSI---------------HE---C-L------GSTDW-ATRKAAADALSALALHSSNLVIDGA-- 285 (896)
Q Consensus 243 -----yle----~lLp~L---------------~e---~-L------sddDW-~lRKaA~EaLgsLA~avGe~L~Py~-- 285 (896)
|+. ..++.. .+ + + -+..| .+|-+|.-.-..+...+-+..-++.
T Consensus 421 ke~~~~~q~~ld~~~~~~q~Fyn~~c~~L~~i~~d~l~~~~t~~~~~f~sswe~vr~aavl~t~~~vd~l~~~~c~~~d~ 500 (533)
T KOG2032|consen 421 KELYHLFQESLDTDMARFQAFYNQWCIQLNHIHPDILMLLLTEDQHIFSSSWEQVREAAVLKTTRSVDSLVRAACSSADG 500 (533)
T ss_pred HHHHHHHhhhhHHhHHHHHHHHHHHHHHHhhhCHHHHHHHHHhchhheecchHHHHHHHHHHHHHHHHHhHHHHHHHhhH
Confidence 111 111100 00 0 1 11357 6777777777777776666666665
Q ss_pred HHHHHHHHhhhcCCChhhHHHHHHHHHHHH
Q 002658 286 TSTLTVLEACRFDKIKPVRDSMNEALQLWK 315 (896)
Q Consensus 286 ~~~I~~LE~~RfDKvKpVRDaA~eALe~WK 315 (896)
..+...+...++|.-..|++.+.+|++...
T Consensus 501 ~qL~~~ls~l~~dp~pev~~~a~~al~~l~ 530 (533)
T KOG2032|consen 501 LQLRSSLSTLWRDPRPEVTDSARKALDLLS 530 (533)
T ss_pred HHHHHHHHHHccCCCchhHHHHHHHhhhHh
Confidence 445778999999999999999999998754
No 41
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.29 E-value=0.00013 Score=92.10 Aligned_cols=248 Identities=17% Similarity=0.154 Sum_probs=168.0
Q ss_pred hHhHHHHHHHHHHHHHcC-CChh-HHHHHHHHHHHHHhcCCCCC---HHHH----HHHHhhhcCCCChhhHHHHHHHHHH
Q 002658 35 HLAMVEMKQKILTSLSKL-ADRD-THQIAIEDLEKTIQTLSQES---LPML----LNCLYESSNDPKPAVKKESVRLLAL 105 (896)
Q Consensus 35 ~~~~~~Lk~rll~~L~KL-sDRD-T~k~Aa~eLD~La~~L~pd~---Lp~f----Ls~L~es~ss~k~~vRKeAIllLG~ 105 (896)
.+.+.+.-.+++--|=++ -|.| ..+.|+ ..|=..|.+|. +.-| |.-|+..+.+..|.+|+++.++|.-
T Consensus 989 ~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM---~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~d 1065 (1702)
T KOG0915|consen 989 GEKLEPYLKKLIPRLYRYQYDPDKKVQDAM---TSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALAD 1065 (1702)
T ss_pred HHhhhhHHHHhhHHHhhhccCCcHHHHHHH---HHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHH
Confidence 334444444455555445 4554 333344 33444443431 4444 4445555688899999999999999
Q ss_pred HHHHhc-ccchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhccc----ccCCchhHhhhHHHHHHHH-hcCCH
Q 002658 106 VCELHS-ELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGK----EENNGTVVGLFVKPLFEAM-MEQNK 179 (896)
Q Consensus 106 IAeg~~-d~I~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~----~e~~~~~~~~lL~pL~eaL-~Eqnk 179 (896)
+..|++ +.+..+||+|+-.+.|..-|-.-.||.|+-.+...|+..+++-+ ...+.+....+||-|++-= ...-+
T Consensus 1066 Ll~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~ 1145 (1702)
T KOG0915|consen 1066 LLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVN 1145 (1702)
T ss_pred HHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchH
Confidence 999999 55899999999999999999999999999888888777776632 1122344555555554421 34567
Q ss_pred hHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchhh-------------------------------------
Q 002658 180 GVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMA------------------------------------- 222 (896)
Q Consensus 180 ~VQ~gAasALAkIIE~a~d~~~~yL~~LlPRL~kLLks~s~ka------------------------------------- 222 (896)
.|-..+...+-.++..++..+.||+++|+|-|+.++.....++
T Consensus 1146 evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~aksspmmeTi~~ci 1225 (1702)
T KOG0915|consen 1146 EVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRASAAKSSPMMETINKCI 1225 (1702)
T ss_pred HHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHH
Confidence 7778888888888888888888999999999988887542211
Q ss_pred ---------------------------HHHHHHHHHHHH-hccccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 002658 223 ---------------------------KASLLPVVGSLS-QVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALA 274 (896)
Q Consensus 223 ---------------------------K~alL~aIgSLA-~vga~~~pyle~lLp~L~e~LsddDW~lRKaA~EaLgsLA 274 (896)
|..+-..|..++ ..|....||...+|..|+..+.|.+-.+||+-+-++|.|+
T Consensus 1226 ~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~sgKll~al~~g~~dRNesv~kafAsAmG~L~ 1305 (1702)
T KOG0915|consen 1226 NYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPYSGKLLRALFPGAKDRNESVRKAFASAMGYLA 1305 (1702)
T ss_pred HhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcchhHHHHHHhhccccccHHHHHHHHHHHHHHH
Confidence 011111122221 1222345888888888888888988999999999999988
Q ss_pred Hhcc-hHHHhhH
Q 002658 275 LHSS-NLVIDGA 285 (896)
Q Consensus 275 ~avG-e~L~Py~ 285 (896)
.... +.+.-++
T Consensus 1306 k~Ss~dq~qKLi 1317 (1702)
T KOG0915|consen 1306 KFSSPDQMQKLI 1317 (1702)
T ss_pred hcCChHHHHHHH
Confidence 8777 3444443
No 42
>PTZ00429 beta-adaptin; Provisional
Probab=98.20 E-value=0.00024 Score=87.05 Aligned_cols=251 Identities=14% Similarity=0.135 Sum_probs=150.7
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhhcCCCh
Q 002658 55 RDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDS 134 (896)
Q Consensus 55 RDT~k~Aa~eLD~La~~L~pd~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrLkDpDs 134 (896)
.-.|..|+..|-.|. .++.++.++..|.....+.+|.|||.|++++..+-..+++.+.. ..+++.+...|.|+++
T Consensus 119 p~IRaLALRtLs~Ir---~~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~--~~~~~~L~~LL~D~dp 193 (746)
T PTZ00429 119 PVVRALAVRTMMCIR---VSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQ--QDFKKDLVELLNDNNP 193 (746)
T ss_pred HHHHHHHHHHHHcCC---cHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccc--cchHHHHHHHhcCCCc
Confidence 335666665554443 35567778888888888999999999999999998887776431 1234455566899999
Q ss_pred HHHHHHHHHHHHHHHHH--------------hc---c----------------cccCCchhHhhhHHHHHHHHhcCCHhH
Q 002658 135 GMKEACRDSIGSLSKLY--------------LN---G----------------KEENNGTVVGLFVKPLFEAMMEQNKGV 181 (896)
Q Consensus 135 ~VR~Ac~~aLG~LA~~l--------------i~---~----------------~~e~~~~~~~~lL~pL~eaL~Eqnk~V 181 (896)
+|...|..++-.+.... +. . .++ .......++..+...|...|+.|
T Consensus 194 ~Vv~nAl~aL~eI~~~~~~~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~-~~~e~~~il~~l~~~Lq~~N~AV 272 (746)
T PTZ00429 194 VVASNAAAIVCEVNDYGSEKIESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPS-DKESAETLLTRVLPRMSHQNPAV 272 (746)
T ss_pred cHHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHHhcCCCHHH
Confidence 99888877766664321 00 0 000 01112334455555555678888
Q ss_pred HHHHHHHHHHHHHhcC-CCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcc-ccCcc-----------------
Q 002658 182 QSGAAMCMAKMVECAS-DPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVG-AIAPQ----------------- 242 (896)
Q Consensus 182 Q~gAasALAkIIE~a~-d~~~~yL~~LlPRL~kLLks~s~kaK~alL~aIgSLA~vg-a~~~p----------------- 242 (896)
.-+|+.++-.+..... +....++.+|.+-|+.++. ...-+|-.+|..|..++... ..|.+
T Consensus 273 Vl~Aik~il~l~~~~~~~~~~~~~~rl~~pLv~L~s-s~~eiqyvaLr~I~~i~~~~P~lf~~~~~~Ff~~~~Dp~yIK~ 351 (746)
T PTZ00429 273 VMGAIKVVANLASRCSQELIERCTVRVNTALLTLSR-RDAETQYIVCKNIHALLVIFPNLLRTNLDSFYVRYSDPPFVKL 351 (746)
T ss_pred HHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHHHhhC-CCccHHHHHHHHHHHHHHHCHHHHHHHHHhhhcccCCcHHHHH
Confidence 8777777776654321 1111233334444455543 33456666666666554322 22222
Q ss_pred -------------cHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcchHHHhhHHHHHHHHHhhhcCCChhhHHHHHH
Q 002658 243 -------------SLEPLLQSIHECLGSTDWATRKAAADALSALALHSSNLVIDGATSTLTVLEACRFDKIKPVRDSMNE 309 (896)
Q Consensus 243 -------------yle~lLp~L~e~LsddDW~lRKaA~EaLgsLA~avGe~L~Py~~~~I~~LE~~RfDKvKpVRDaA~e 309 (896)
.++.++.-|.+++++.|-+.++.++.+|+.+|...+.. ...|++.|...-.++.. ++.+
T Consensus 352 ~KLeIL~~Lane~Nv~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~~~----a~~cV~~Ll~ll~~~~~----~v~e 423 (746)
T PTZ00429 352 EKLRLLLKLVTPSVAPEILKELAEYASGVDMVFVVEVVRAIASLAIKVDSV----APDCANLLLQIVDRRPE----LLPQ 423 (746)
T ss_pred HHHHHHHHHcCcccHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhChHH----HHHHHHHHHHHhcCCch----hHHH
Confidence 23445556777888889999999999999999877654 45555554433334443 2334
Q ss_pred HHHHHHHhccC
Q 002658 310 ALQLWKKIAGK 320 (896)
Q Consensus 310 ALe~WK~la~~ 320 (896)
++...+.|-..
T Consensus 424 ~i~vik~Ilrk 434 (746)
T PTZ00429 424 VVTAAKDIVRK 434 (746)
T ss_pred HHHHHHHHHHH
Confidence 55555555433
No 43
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.15 E-value=6e-05 Score=93.23 Aligned_cols=229 Identities=18% Similarity=0.220 Sum_probs=159.0
Q ss_pred hhhHhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhcCCCCC-HHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhc
Q 002658 33 SSHLAMVEMKQKILTSLSKLADRDTHQIAIEDLEKTIQTLSQES-LPMLLNCLYESSNDPKPAVKKESVRLLALVCELHS 111 (896)
Q Consensus 33 s~~~~~~~Lk~rll~~L~KLsDRDT~k~Aa~eLD~La~~L~pd~-Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~ 111 (896)
-.+.-++-+.--|..|+.-+.-+++..-|++.|..++..++.+. |..+|+++.--..++...||-.|+..|..+...-.
T Consensus 415 ~~~~ga~l~vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr 494 (1431)
T KOG1240|consen 415 PKEEGAVLFVSVLTSCIRALKTIQTKLAALELLQELSTYIDDEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVR 494 (1431)
T ss_pred ccccceeeeHHHHHHHHHhhhcchhHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhcc
Confidence 34455666677788899999888899999999999999886654 77778887766778889999999988776655433
Q ss_pred cc----chhhHHHHHHHHHHhhcC-CChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHH--HhcCCH-hHH-
Q 002658 112 EL----TSTHVTKIISHIVKRLKD-SDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEA--MMEQNK-GVQ- 182 (896)
Q Consensus 112 d~----I~P~LpkIL~~IlrrLkD-pDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~ea--L~Eqnk-~VQ- 182 (896)
+. ..=|-+||+|.|...+.| ....||-|-+..|+.||.-..+ +-++-..+-.+ +.+.|- ..+
T Consensus 495 ~~~~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~r---------Fle~~q~~~~~g~~n~~nset~~~ 565 (1431)
T KOG1240|consen 495 DIPPSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYR---------FLELTQELRQAGMLNDPNSETAPE 565 (1431)
T ss_pred CCCcccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHH---------HHHHHHHHHhcccccCcccccccc
Confidence 22 233678889999999999 6779999999999999987732 22222222222 122211 111
Q ss_pred ---HHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHH-hccccCcccHHHHHHHHHHhhCCC
Q 002658 183 ---SGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLS-QVGAIAPQSLEPLLQSIHECLGST 258 (896)
Q Consensus 183 ---~gAasALAkIIE~a~d~~~~yL~~LlPRL~kLLks~s~kaK~alL~aIgSLA-~vga~~~pyle~lLp~L~e~Lsdd 258 (896)
.+-..+|-..|| ..+..+|..+...+|.++|..|+-+- -.|. ...=+.+|+.|.-+|.|.
T Consensus 566 ~~~~~~~~~L~~~V~--------------~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk--~ksND~iLshLiTfLNDk 629 (1431)
T KOG1240|consen 566 QNYNTELQALHHTVE--------------QMVSSLLSDSPPIVKRALLESIIPLCVFFGK--EKSNDVILSHLITFLNDK 629 (1431)
T ss_pred cccchHHHHHHHHHH--------------HHHHHHHcCCchHHHHHHHHHHHHHHHHhhh--cccccchHHHHHHHhcCc
Confidence 111222222222 33455667777789999999988773 2341 112246889999999999
Q ss_pred CHHHHHHHHHHHHHHHHhcch-----HHHhhHH
Q 002658 259 DWATRKAAADALSALALHSSN-----LVIDGAT 286 (896)
Q Consensus 259 DW~lRKaA~EaLgsLA~avGe-----~L~Py~~ 286 (896)
||.+|.+=.|.|..|+..+|. .+.|++.
T Consensus 630 Dw~LR~aFfdsI~gvsi~VG~rs~seyllPLl~ 662 (1431)
T KOG1240|consen 630 DWRLRGAFFDSIVGVSIFVGWRSVSEYLLPLLQ 662 (1431)
T ss_pred cHHHHHHHHhhccceEEEEeeeeHHHHHHHHHH
Confidence 999999999999999999983 4555543
No 44
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=98.12 E-value=0.00026 Score=84.29 Aligned_cols=206 Identities=13% Similarity=0.215 Sum_probs=155.1
Q ss_pred CChhHHHHHHHHHHHHHhcCC------C--CCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccch-hhHHHHHH
Q 002658 53 ADRDTHQIAIEDLEKTIQTLS------Q--ESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTS-THVTKIIS 123 (896)
Q Consensus 53 sDRDT~k~Aa~eLD~La~~L~------p--d~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I~-P~LpkIL~ 123 (896)
.+.++.-..+.+|..|.+.++ | +.||.+++.|. +..-.+-..||.++|.||...++++. --+=+|.=
T Consensus 853 eypEvLgsILgAikaI~nvigm~km~pPi~dllPrltPILk----nrheKVqen~IdLvg~IadrgpE~v~aREWMRIcf 928 (1172)
T KOG0213|consen 853 EYPEVLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILK----NRHEKVQENCIDLVGTIADRGPEYVSAREWMRICF 928 (1172)
T ss_pred ccHHHHHHHHHHHHHHHHhccccccCCChhhhcccchHhhh----hhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHH
Confidence 367788888899999887652 3 12444444444 33345667899999999999999864 35667777
Q ss_pred HHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCchh
Q 002658 124 HIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVA 203 (896)
Q Consensus 124 ~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~a~d~~~~y 203 (896)
-++..|+-..-.+|.++.+++|-|+..+ ++ ..+|..|++.|.-+...-..+...|++-+-|.+..-
T Consensus 929 eLlelLkahkK~iRRaa~nTfG~IakaI---GP-------qdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pF---- 994 (1172)
T KOG0213|consen 929 ELLELLKAHKKEIRRAAVNTFGYIAKAI---GP-------QDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPF---- 994 (1172)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHhc---CH-------HHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCch----
Confidence 8999999999999999999999999998 43 357777777775443333334445555555654321
Q ss_pred HHHHHHHHHHHhcCCchhhHHHHHHHHHHHHh-ccccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcc
Q 002658 204 FQKLCARICKLLSNQNFMAKASLLPVVGSLSQ-VGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSS 278 (896)
Q Consensus 204 L~~LlPRL~kLLks~s~kaK~alL~aIgSLA~-vga~~~pyle~lLp~L~e~LsddDW~lRKaA~EaLgsLA~avG 278 (896)
.++|-|..=-..|..-+++.+|.++.-++. .|.....|+-.+.|.|.+.|+|.|.--|..|+.++..|+..+.
T Consensus 995 --tVLPalmneYrtPe~nVQnGVLkalsf~FeyigemskdYiyav~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~~ 1068 (1172)
T KOG0213|consen 995 --TVLPALMNEYRTPEANVQNGVLKALSFMFEYIGEMSKDYIYAVTPLLEDALMDRDLVHRQTAMNVIKHLALGVP 1068 (1172)
T ss_pred --hhhHHHHhhccCchhHHHHhHHHHHHHHHHHHHHHhhhHHHHhhHHHHHhhccccHHHHHHHHHHHHHHhcCCC
Confidence 266777766777888888999999988875 6777788999999999999999999999999999999887654
No 45
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=98.09 E-value=0.00017 Score=82.65 Aligned_cols=202 Identities=14% Similarity=0.134 Sum_probs=143.2
Q ss_pred HHHHHHHHhhhcCCCChhhHHHHHH-HHHHHHHHhcccchhhHHHHHHHHHHhhcC-CChHHHHHHHHHHHHHHHHHhcc
Q 002658 77 LPMLLNCLYESSNDPKPAVKKESVR-LLALVCELHSELTSTHVTKIISHIVKRLKD-SDSGMKEACRDSIGSLSKLYLNG 154 (896)
Q Consensus 77 Lp~fLs~L~es~ss~k~~vRKeAIl-lLG~IAeg~~d~I~P~LpkIL~~IlrrLkD-pDs~VR~Ac~~aLG~LA~~li~~ 154 (896)
.......|.+...+.+...|++|+. +.+.++++--.-=..|..+|+-.++..|.| .+..++.-|...|+-+...=..-
T Consensus 285 ~~~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~ 364 (516)
T KOG2956|consen 285 SALVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPAR 364 (516)
T ss_pred hHHHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHh
Confidence 4444444444455668889999998 888888865444578999999999999999 67788888888877766554221
Q ss_pred cccCCchhHhhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHH
Q 002658 155 KEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLS 234 (896)
Q Consensus 155 ~~e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~a~d~~~~yL~~LlPRL~kLLks~s~kaK~alL~aIgSLA 234 (896)
-+ +.....+.-++++-.+..+.|-..|..|..+++-. ..+...+-.++|.++. ..++.-.++|.++--++
T Consensus 365 l~----DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las--~~P~~~I~~i~~~Ilt----~D~~~~~~~iKm~Tkl~ 434 (516)
T KOG2956|consen 365 LF----DSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLAS--HLPLQCIVNISPLILT----ADEPRAVAVIKMLTKLF 434 (516)
T ss_pred hh----chHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHh--hCchhHHHHHhhHHhc----CcchHHHHHHHHHHHHH
Confidence 11 22333444555555556666666666665555542 2233455566676664 45665557777777766
Q ss_pred h-cc-ccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcc-hHHHhhHHHH
Q 002658 235 Q-VG-AIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSS-NLVIDGATST 288 (896)
Q Consensus 235 ~-vg-a~~~pyle~lLp~L~e~LsddDW~lRKaA~EaLgsLA~avG-e~L~Py~~~~ 288 (896)
. +- +...+.++.++|++++...+..-.+||.|+=||++|...+| +.+.||+.++
T Consensus 435 e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~~mePhL~~L 491 (516)
T KOG2956|consen 435 ERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGMEEMEPHLEQL 491 (516)
T ss_pred hhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHHhhhhHhhhc
Confidence 3 33 45678899999999999999999999999999999999999 9999998766
No 46
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.05 E-value=0.0017 Score=80.99 Aligned_cols=243 Identities=17% Similarity=0.180 Sum_probs=177.1
Q ss_pred HHHHHHHHHH---hcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHH--hcccchhhHHHHHHHHHHhhcCCCh
Q 002658 60 IAIEDLEKTI---QTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCEL--HSELTSTHVTKIISHIVKRLKDSDS 134 (896)
Q Consensus 60 ~Aa~eLD~La---~~L~pd~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg--~~d~I~P~LpkIL~~IlrrLkDpDs 134 (896)
..+..||.++ ...+.+.+..++.......++..+.+++-+..+|+.++.+ +..+...++..|...+...+++...
T Consensus 632 ~~~slLdl~~~~a~~~~e~~vs~l~~v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~ 711 (1176)
T KOG1248|consen 632 KTLSLLDLLIALAPVQTESQVSKLFTVDPEFENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSS 711 (1176)
T ss_pred HHHHHHHHHHhhhccccchhHHHHHHhhHHhhccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccch
Confidence 3344455444 3344555777774554545666788999999999999998 4445788999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhcCCHhHHHHHHHHHHHHH--Hhc----CCCCchhHHHHH
Q 002658 135 GMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMV--ECA----SDPPVVAFQKLC 208 (896)
Q Consensus 135 ~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasALAkII--E~a----~d~~~~yL~~Ll 208 (896)
.+|...+.++-.|...+-.+ +-..++..++-++=.+.+.|...-..|+.||.-++ ... .++....|+..+
T Consensus 712 ~~~~~rl~~L~~L~~~~~~e----~~~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl 787 (1176)
T KOG1248|consen 712 PAQASRLKCLKRLLKLLSAE----HCDLIPKLIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFL 787 (1176)
T ss_pred HHHHHHHHHHHHHHHhccHH----HHHHHHHHHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHH
Confidence 99999999999998887211 11223333333333335667777778999998888 332 222244788888
Q ss_pred HHHHHHhcCCchhhHHHHHHHHHHHHh-cc-ccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcc-hHHHhhH
Q 002658 209 ARICKLLSNQNFMAKASLLPVVGSLSQ-VG-AIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSS-NLVIDGA 285 (896)
Q Consensus 209 PRL~kLLks~s~kaK~alL~aIgSLA~-vg-a~~~pyle~lLp~L~e~LsddDW~lRKaA~EaLgsLA~avG-e~L~Py~ 285 (896)
+.+...|-+.....++.-|-+|+.+.. .+ -...+++..++..+.-+|.....++|++|+..+..+....+ ..+.||.
T Consensus 788 ~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~ 867 (1176)
T KOG1248|consen 788 SIISAGLVGDSTRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHL 867 (1176)
T ss_pred HHHHhhhcccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhH
Confidence 888888776666655554777777753 33 34578888999999999999999999999999999999999 8899999
Q ss_pred HHHHHHHHhhhcCCChhhHHH
Q 002658 286 TSTLTVLEACRFDKIKPVRDS 306 (896)
Q Consensus 286 ~~~I~~LE~~RfDKvKpVRDa 306 (896)
+.++..+.....|+--.+|-.
T Consensus 868 ~~LL~sll~ls~d~k~~~r~K 888 (1176)
T KOG1248|consen 868 EELLPSLLALSHDHKIKVRKK 888 (1176)
T ss_pred HHHHHHHHHHHHhhhHHHHHH
Confidence 999998877777744444443
No 47
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=98.04 E-value=0.00068 Score=75.25 Aligned_cols=202 Identities=14% Similarity=0.142 Sum_probs=134.8
Q ss_pred CCChhhHHHHHHHHHHHHHHhc--ccchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhH
Q 002658 90 DPKPAVKKESVRLLALVCELHS--ELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFV 167 (896)
Q Consensus 90 s~k~~vRKeAIllLG~IAeg~~--d~I~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL 167 (896)
+.+...|.+++..|-.+...+. +.+..+...|+..+++.|+=..+.=+..++.+++-|+-.+- ......+++..+.
T Consensus 54 eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg--~g~~~~ei~~~~~ 131 (309)
T PF05004_consen 54 EKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLG--AGEDSEEIFEELK 131 (309)
T ss_pred hcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcC--CCccHHHHHHHHH
Confidence 4457889999999888877655 66888899999999999998887667777888888887761 1233457788888
Q ss_pred HHHHHHHhcCCH--hHHHHHHHHHHHHHHhcCCCCchhH--HHHHHHHH--HHhcCC----------chhhHHHHHHHHH
Q 002658 168 KPLFEAMMEQNK--GVQSGAAMCMAKMVECASDPPVVAF--QKLCARIC--KLLSNQ----------NFMAKASLLPVVG 231 (896)
Q Consensus 168 ~pL~eaL~Eqnk--~VQ~gAasALAkIIE~a~d~~~~yL--~~LlPRL~--kLLks~----------s~kaK~alL~aIg 231 (896)
++|...+.+... .+..+++.||+-++=-.......+. -..|.-++ -+++.. ...+..++|.+-+
T Consensus 132 ~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~ 211 (309)
T PF05004_consen 132 PVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWA 211 (309)
T ss_pred HHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHH
Confidence 888888865543 4434455566665543222222222 13334222 222221 2345667777777
Q ss_pred HHHh-cc-ccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcch----HHHhhHHHHHHHHH
Q 002658 232 SLSQ-VG-AIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSSN----LVIDGATSTLTVLE 293 (896)
Q Consensus 232 SLA~-vg-a~~~pyle~lLp~L~e~LsddDW~lRKaA~EaLgsLA~avGe----~L~Py~~~~I~~LE 293 (896)
-++. +. ..+..+++..+|.|.++|.++|-.+|.+|-++|+.|.....+ ...+....+++.|.
T Consensus 212 lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~~~~~~~~~~~~~~l~~~l~ 279 (309)
T PF05004_consen 212 LLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELARDHEEDFLYEDMEELLEQLR 279 (309)
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhcccccccccCHHHHHHHHH
Confidence 6653 22 224467788999999999999999999999999988776662 23344555555554
No 48
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=97.99 E-value=1.4e-05 Score=72.85 Aligned_cols=111 Identities=18% Similarity=0.184 Sum_probs=86.1
Q ss_pred CHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccchhhHH-HHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcc
Q 002658 76 SLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVT-KIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNG 154 (896)
Q Consensus 76 ~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I~P~Lp-kIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~ 154 (896)
.++.++.++. +.++.+|+.++.+|++++....+.....+. .+++.+++.|.|+++.|+..|+++++.|+......
T Consensus 8 ~i~~l~~~l~----~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~ 83 (120)
T cd00020 8 GLPALVSLLS----SSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDN 83 (120)
T ss_pred ChHHHHHHHH----cCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHH
Confidence 3566666665 445899999999999999875555444455 88999999999999999999999999998654110
Q ss_pred cccCCchhH-hhhHHHHHHHHhcCCHhHHHHHHHHHHHHHH
Q 002658 155 KEENNGTVV-GLFVKPLFEAMMEQNKGVQSGAAMCMAKMVE 194 (896)
Q Consensus 155 ~~e~~~~~~-~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE 194 (896)
....+ ..+++.|++.|.+.+..++..|+.+|..+++
T Consensus 84 ----~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 84 ----KLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred ----HHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 01112 2378899999988899999999999998875
No 49
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.93 E-value=0.00038 Score=70.87 Aligned_cols=93 Identities=16% Similarity=0.268 Sum_probs=76.4
Q ss_pred ChhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHH
Q 002658 92 KPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLF 171 (896)
Q Consensus 92 k~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~ 171 (896)
+|.+|..++.++|-++-.|+..+.||+ +.+..+|+|+++.||..|.-++..|...-. -..-..++..++
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve~~~----~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~-------ik~k~~l~~~~l 69 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVEPYL----PNLYKCLRDEDPLVRKTALLVLSHLILEDM-------IKVKGQLFSRIL 69 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHHhHH----HHHHHHHCCCCHHHHHHHHHHHHHHHHcCc-------eeehhhhhHHHH
Confidence 478999999999999999988888776 556689999999999999999888765421 122445667777
Q ss_pred HHHhcCCHhHHHHHHHHHHHHHHh
Q 002658 172 EAMMEQNKGVQSGAAMCMAKMVEC 195 (896)
Q Consensus 172 eaL~Eqnk~VQ~gAasALAkIIE~ 195 (896)
.+|.|.++.|+..|..+|..+...
T Consensus 70 ~~l~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 70 KLLVDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHh
Confidence 888999999999999999999886
No 50
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=97.92 E-value=3e-05 Score=70.76 Aligned_cols=109 Identities=18% Similarity=0.132 Sum_probs=87.9
Q ss_pred hHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCchhHH-HHHHHHHHHhcCCchhhHHHHHHHHHHHHhccc-cCccc
Q 002658 166 FVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQ-KLCARICKLLSNQNFMAKASLLPVVGSLSQVGA-IAPQS 243 (896)
Q Consensus 166 lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~a~d~~~~yL~-~LlPRL~kLLks~s~kaK~alL~aIgSLA~vga-~~~py 243 (896)
+++.|++.|.+.++.+...|+.||..++...+.....++. .++|.|+++|++++.+++..++.+++.++.... ....+
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 87 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIV 87 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHH
Confidence 7888999998889999999999999999865333334555 689999999999999999999999999875331 11111
Q ss_pred H-HHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 002658 244 L-EPLLQSIHECLGSTDWATRKAAADALSALA 274 (896)
Q Consensus 244 l-e~lLp~L~e~LsddDW~lRKaA~EaLgsLA 274 (896)
. ..+++.|.+++.+.+..+|+.|+.+|..|+
T Consensus 88 ~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 88 LEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 2 237889999999999999999999999876
No 51
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.88 E-value=0.00017 Score=79.30 Aligned_cols=174 Identities=17% Similarity=0.165 Sum_probs=131.9
Q ss_pred HHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccc
Q 002658 77 LPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKE 156 (896)
Q Consensus 77 Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~ 156 (896)
-..-|...+..+.+.+|...=.++..+-.+++.|.+.+.+.|.+++-+|++.++.+.+.|-.++|-|++.|+..+-.
T Consensus 86 p~~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~--- 162 (334)
T KOG2933|consen 86 PEAALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNN--- 162 (334)
T ss_pred HHHHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHH---
Confidence 44556666667788999999999999999999999999999999999999999999999999999999999999932
Q ss_pred cCCchhHhhhHHHHHHHH----hcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHH-HH
Q 002658 157 ENNGTVVGLFVKPLFEAM----MEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPV-VG 231 (896)
Q Consensus 157 e~~~~~~~~lL~pL~eaL----~Eqnk~VQ~gAasALAkIIE~a~d~~~~yL~~LlPRL~kLLks~s~kaK~alL~a-Ig 231 (896)
....-+..|+..| .+.|..|-+.|--||-+++..... .++++.|+.+++|.+..++...--| .+
T Consensus 163 -----~i~~~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp------~~~L~~L~~~~~~~n~r~r~~a~~~~~~ 231 (334)
T KOG2933|consen 163 -----SIDQELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTP------QKLLRKLIPILQHSNPRVRAKAALCFSR 231 (334)
T ss_pred -----HHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccCh------HHHHHHHHHHHhhhchhhhhhhhccccc
Confidence 2344666666666 355788999999999999986532 2477778888887666655432223 23
Q ss_pred HHHhcc--ccCcccHHHHHHHHHHhhCCCCHHHHH
Q 002658 232 SLSQVG--AIAPQSLEPLLQSIHECLGSTDWATRK 264 (896)
Q Consensus 232 SLA~vg--a~~~pyle~lLp~L~e~LsddDW~lRK 264 (896)
.+...| ....+|...+++.+.+-+.+.=..+|+
T Consensus 232 ~v~rl~v~~~~~~~~~dl~~a~~~~~~d~Lp~~~~ 266 (334)
T KOG2933|consen 232 CVIRLGVLPVLLQGSCDLSRAAQEQGSDKLPELRE 266 (334)
T ss_pred cceeccccchhhHhHHHHHHHHHhhhccccccccc
Confidence 333333 445677778888888877775544443
No 52
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.84 E-value=0.00012 Score=64.49 Aligned_cols=78 Identities=24% Similarity=0.409 Sum_probs=63.7
Q ss_pred CCCChhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHH
Q 002658 89 NDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVK 168 (896)
Q Consensus 89 ss~k~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~ 168 (896)
+++++.+|..++.+||.+. -++.++.++..|+|+++.||.++++++|.+. -+..++
T Consensus 10 ~~~~~~vr~~a~~~L~~~~----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~--------------~~~~~~ 65 (88)
T PF13646_consen 10 NDPDPQVRAEAARALGELG----------DPEAIPALIELLKDEDPMVRRAAARALGRIG--------------DPEAIP 65 (88)
T ss_dssp TSSSHHHHHHHHHHHHCCT----------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH--------------HHHTHH
T ss_pred cCCCHHHHHHHHHHHHHcC----------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC--------------CHHHHH
Confidence 5788999999999999331 2477899999999999999999999999763 244778
Q ss_pred HHHHHHhc-CCHhHHHHHHHHHH
Q 002658 169 PLFEAMME-QNKGVQSGAAMCMA 190 (896)
Q Consensus 169 pL~eaL~E-qnk~VQ~gAasALA 190 (896)
.|.+.|.+ .+..|+..|+.+|+
T Consensus 66 ~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 66 ALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHcCCCcHHHHHHHHhhcC
Confidence 88888854 57788999999885
No 53
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=97.83 E-value=0.0011 Score=77.84 Aligned_cols=273 Identities=14% Similarity=0.147 Sum_probs=155.8
Q ss_pred HHHHHHcC--CChhHHHHHHHHHHHHHhcCC---CCC-HHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhc-ccchhh
Q 002658 45 ILTSLSKL--ADRDTHQIAIEDLEKTIQTLS---QES-LPMLLNCLYESSNDPKPAVKKESVRLLALVCELHS-ELTSTH 117 (896)
Q Consensus 45 ll~~L~KL--sDRDT~k~Aa~eLD~La~~L~---pd~-Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~-d~I~P~ 117 (896)
|-++|..| .-.+.+..|+...-.++..|. ... +.-+=..|++++....|.+=-..+.++..|...|. +.+.|-
T Consensus 606 vStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~mqpP 685 (975)
T COG5181 606 VSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYENLGEDYPEVLGSILKAICSIYSVHRFRSMQPP 685 (975)
T ss_pred HHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhcccccCCc
Confidence 33445444 346677777776666554442 112 32323334566655555554444444444444454 346666
Q ss_pred HHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcC
Q 002658 118 VTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECAS 197 (896)
Q Consensus 118 LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~a~ 197 (896)
+..|+|.|..-|+.....|..-+...+|.++.....- -+...|--++=-|++.|...||...-.|-..+.-|-+..+
T Consensus 686 i~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~pey---i~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~aiG 762 (975)
T COG5181 686 ISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEY---IGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRAIG 762 (975)
T ss_pred hhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCccc---CCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhcC
Confidence 6666666666666666666555555555555444110 0113344455555555555555554433322222222110
Q ss_pred CCC---------------------------chh--HHHHHHHHHHHhcCCchhhHHHHHHHHHHHHh-ccccCcccHHHH
Q 002658 198 DPP---------------------------VVA--FQKLCARICKLLSNQNFMAKASLLPVVGSLSQ-VGAIAPQSLEPL 247 (896)
Q Consensus 198 d~~---------------------------~~y--L~~LlPRL~kLLks~s~kaK~alL~aIgSLA~-vga~~~pyle~l 247 (896)
.++ .+| .=.++|-|..=...|..-+++.+|.++.-++. .|.....|+-.+
T Consensus 763 PqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpfsVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s~dYvy~i 842 (975)
T COG5181 763 PQDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGPFSVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQASLDYVYSI 842 (975)
T ss_pred HHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCchhhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 000 001 11256666666667777778888888877764 666777899999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHHHHhcc-hHHHhhHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHhccC
Q 002658 248 LQSIHECLGSTDWATRKAAADALSALALHSS-NLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQLWKKIAGK 320 (896)
Q Consensus 248 Lp~L~e~LsddDW~lRKaA~EaLgsLA~avG-e~L~Py~~~~I~~LE~~RfDKvKpVRDaA~eALe~WK~la~~ 320 (896)
.|-|.+.|+|.|.--|..|+..+..|+...+ ---...+--++++|-..-++..++|-.+..|-++.+...-|+
T Consensus 843 tPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gtg~eda~IHLlNllwpNIle~sPhvi~~~~Eg~e~~~~~lg~ 916 (975)
T COG5181 843 TPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGTGDEDAAIHLLNLLWPNILEPSPHVIQSFDEGMESFATVLGS 916 (975)
T ss_pred hHHHHhhhcccchHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhhhhccCCCcHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999998887644 111112233455555666677777777766666666655533
No 54
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.80 E-value=0.002 Score=70.78 Aligned_cols=154 Identities=23% Similarity=0.290 Sum_probs=92.5
Q ss_pred HHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCc
Q 002658 81 LNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNG 160 (896)
Q Consensus 81 Ls~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~ 160 (896)
...+.....+.++.+|..+...++.+.. ...++.+...|.|.++.||..+..++|.+-
T Consensus 45 ~~~~~~~l~~~~~~vr~~aa~~l~~~~~----------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~------------ 102 (335)
T COG1413 45 ADELLKLLEDEDLLVRLSAAVALGELGS----------EEAVPLLRELLSDEDPRVRDAAADALGELG------------ 102 (335)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHhhhch----------HHHHHHHHHHhcCCCHHHHHHHHHHHHccC------------
Confidence 3334444445578888888877655543 456777888888888888888888666332
Q ss_pred hhHhhhHHHHHHHHh-cCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCch------------hhHHHHH
Q 002658 161 TVVGLFVKPLFEAMM-EQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNF------------MAKASLL 227 (896)
Q Consensus 161 ~~~~~lL~pL~eaL~-Eqnk~VQ~gAasALAkIIE~a~d~~~~yL~~LlPRL~kLLks~s~------------kaK~alL 227 (896)
.+..+++|.+.|. +.+..|...|+.+|.++-+.. -+..++.++++... .+|.+++
T Consensus 103 --~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~----------a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~ 170 (335)
T COG1413 103 --DPEAVPPLVELLENDENEGVRAAAARALGKLGDER----------ALDPLLEALQDEDSGSAAAALDAALLDVRAAAA 170 (335)
T ss_pred --ChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCchh----------hhHHHHHHhccchhhhhhhhccchHHHHHHHHH
Confidence 3446777777776 688888888888888776531 13334444444331 1222222
Q ss_pred HHHHHHHhccccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhc
Q 002658 228 PVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHS 277 (896)
Q Consensus 228 ~aIgSLA~vga~~~pyle~lLp~L~e~LsddDW~lRKaA~EaLgsLA~av 277 (896)
.+++.+ .-+..++.|.+.+.+.+..+|.+|+.+|+.+....
T Consensus 171 ~~l~~~---------~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~ 211 (335)
T COG1413 171 EALGEL---------GDPEAIPLLIELLEDEDADVRRAAASALGQLGSEN 211 (335)
T ss_pred HHHHHc---------CChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch
Confidence 222211 12244555666666666667777777666655543
No 55
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.79 E-value=0.0046 Score=76.21 Aligned_cols=181 Identities=11% Similarity=0.181 Sum_probs=130.3
Q ss_pred HHHHHhcCCCCCHHHHHHHHhhhcC--------CCChhhHHHHHHHHHHHHHHhccc--chhhHHHH-HHHHHHhhcCCC
Q 002658 65 LEKTIQTLSQESLPMLLNCLYESSN--------DPKPAVKKESVRLLALVCELHSEL--TSTHVTKI-ISHIVKRLKDSD 133 (896)
Q Consensus 65 LD~La~~L~pd~Lp~fLs~L~es~s--------s~k~~vRKeAIllLG~IAeg~~d~--I~P~LpkI-L~~IlrrLkDpD 133 (896)
|-.++..=..+.|+.+|+++.+-+. ..++..+.-|++++|.+++.-.+. ....+++| +++|.+.+++|-
T Consensus 396 l~~~~~KR~ke~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~ 475 (1010)
T KOG1991|consen 396 LTTLVSKRGKETLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPY 475 (1010)
T ss_pred HHHHHHhcchhhhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCch
Confidence 4444443356668888888876543 334556666999999999877644 34566665 468999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHh-cCCHhHHHHHHHHHHHHHHhcCCC---CchhHHHHHH
Q 002658 134 SGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMM-EQNKGVQSGAAMCMAKMVECASDP---PVVAFQKLCA 209 (896)
Q Consensus 134 s~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~-Eqnk~VQ~gAasALAkIIE~a~d~---~~~yL~~LlP 209 (896)
-.+|.-+||+++++++.=++. ...+...+.....+|. ++.-.|+.-|+.||..++++.... +.+.++.+|.
T Consensus 476 g~Lrarac~vl~~~~~~df~d-----~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq 550 (1010)
T KOG1991|consen 476 GYLRARACWVLSQFSSIDFKD-----PNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQ 550 (1010)
T ss_pred hHHHHHHHHHHHHHHhccCCC-----hHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHH
Confidence 999999999999999543332 2457788888888886 777789999999999999986533 5678999999
Q ss_pred HHHHHhcCCchhhHHHHHHHHHHHHh-ccccCcccHHHHHHHHHH
Q 002658 210 RICKLLSNQNFMAKASLLPVVGSLSQ-VGAIAPQSLEPLLQSIHE 253 (896)
Q Consensus 210 RL~kLLks~s~kaK~alL~aIgSLA~-vga~~~pyle~lLp~L~e 253 (896)
.|+++.+.-... .+-.++-.++. .+....||...+++.|.+
T Consensus 551 ~lL~L~ne~End---~Lt~vme~iV~~fseElsPfA~eL~q~La~ 592 (1010)
T KOG1991|consen 551 ELLKLSNEVEND---DLTNVMEKIVCKFSEELSPFAVELCQNLAE 592 (1010)
T ss_pred HHHHHHHhcchh---HHHHHHHHHHHHHHHhhchhHHHHHHHHHH
Confidence 999998853222 23334444432 334566777777776655
No 56
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.77 E-value=0.0019 Score=71.09 Aligned_cols=182 Identities=20% Similarity=0.318 Sum_probs=119.6
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhhc-CCC
Q 002658 55 RDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLK-DSD 133 (896)
Q Consensus 55 RDT~k~Aa~eLD~La~~L~pd~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrLk-DpD 133 (896)
..++..|+..|-.+-. .+.++.+...+ .+..+.+|..++.+||.+-. +.-++.+++.|. |++
T Consensus 57 ~~vr~~aa~~l~~~~~---~~av~~l~~~l----~d~~~~vr~~a~~aLg~~~~----------~~a~~~li~~l~~d~~ 119 (335)
T COG1413 57 LLVRLSAAVALGELGS---EEAVPLLRELL----SDEDPRVRDAAADALGELGD----------PEAVPPLVELLENDEN 119 (335)
T ss_pred HHHHHHHHHHHhhhch---HHHHHHHHHHh----cCCCHHHHHHHHHHHHccCC----------hhHHHHHHHHHHcCCc
Confidence 4455555555333221 22244444444 46678999999997766542 334556666666 899
Q ss_pred hHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhcCCHh------------HHHHHHHHHHHHHHhcCCCCc
Q 002658 134 SGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKG------------VQSGAAMCMAKMVECASDPPV 201 (896)
Q Consensus 134 s~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~Eqnk~------------VQ~gAasALAkIIE~a~d~~~ 201 (896)
..||..|.++++.+-..- .+.+|++.+.+.... ++.++..+|..+-+
T Consensus 120 ~~vR~~aa~aL~~~~~~~--------------a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~~------- 178 (335)
T COG1413 120 EGVRAAAARALGKLGDER--------------ALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGELGD------- 178 (335)
T ss_pred HhHHHHHHHHHHhcCchh--------------hhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHcCC-------
Confidence 999999999999653322 477888888765532 33444444433322
Q ss_pred hhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhccccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcc-hH
Q 002658 202 VAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSS-NL 280 (896)
Q Consensus 202 ~yL~~LlPRL~kLLks~s~kaK~alL~aIgSLA~vga~~~pyle~lLp~L~e~LsddDW~lRKaA~EaLgsLA~avG-e~ 280 (896)
+..++-+..++.+...-+|..+..+++.+..-. ..+.+.+...+.+++|.+|+.++.+|+.+...-. ..
T Consensus 179 ---~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~-------~~~~~~l~~~~~~~~~~vr~~~~~~l~~~~~~~~~~~ 248 (335)
T COG1413 179 ---PEAIPLLIELLEDEDADVRRAAASALGQLGSEN-------VEAADLLVKALSDESLEVRKAALLALGEIGDEEAVDA 248 (335)
T ss_pred ---hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch-------hhHHHHHHHHhcCCCHHHHHHHHHHhcccCcchhHHH
Confidence 235666777777777778888788877764311 5677888899999999999999999998766555 44
Q ss_pred HHhh
Q 002658 281 VIDG 284 (896)
Q Consensus 281 L~Py 284 (896)
+..+
T Consensus 249 l~~~ 252 (335)
T COG1413 249 LAKA 252 (335)
T ss_pred HHHH
Confidence 4444
No 57
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=97.77 E-value=8.8e-05 Score=82.18 Aligned_cols=214 Identities=14% Similarity=0.191 Sum_probs=147.9
Q ss_pred CHHHHHHHHhhhcCCCChhhHHHHHHHHHHHH---HHhcccchh--hHHHHHHHHHHhhcCCC---hHHHHHHHHHHHHH
Q 002658 76 SLPMLLNCLYESSNDPKPAVKKESVRLLALVC---ELHSELTST--HVTKIISHIVKRLKDSD---SGMKEACRDSIGSL 147 (896)
Q Consensus 76 ~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IA---eg~~d~I~P--~LpkIL~~IlrrLkDpD---s~VR~Ac~~aLG~L 147 (896)
.+|.|+..|. +.+-.+|+.++-+||++| ++|-|++.. .|..++..+. .+. +++|++ -|++..|
T Consensus 158 AVPlfiqlL~----s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~----ss~~~ismlRn~-TWtLSNl 228 (526)
T COG5064 158 AVPLFIQLLS----STEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLL----SSAIHISMLRNA-TWTLSNL 228 (526)
T ss_pred chHHHHHHHc----CchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHH----hccchHHHHHHh-HHHHHHh
Confidence 4666666665 455679999999999996 566666533 3555555444 322 567765 4788877
Q ss_pred HHHHhcccccCCchhHhhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCchhHHH-HHHHHHHHhcCCchhhHHHH
Q 002658 148 SKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQK-LCARICKLLSNQNFMAKASL 226 (896)
Q Consensus 148 A~~li~~~~e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~a~d~~~~yL~~-LlPRL~kLLks~s~kaK~al 226 (896)
++-= .| +..-..+...++.|+..+-.-++.|-.-||-|+.-+.+...+.+...|+. +.+||+++|.|++.++..-+
T Consensus 229 cRGk-nP--~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPa 305 (526)
T COG5064 229 CRGK-NP--PPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPA 305 (526)
T ss_pred hCCC-CC--CCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHH
Confidence 7654 22 22346677889999999988899999999999999988765555556663 78999999999999998888
Q ss_pred HHHHHHHHhcc-ccCcccH-HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcchHHHhh-----HHHHHHHHHhhhcCC
Q 002658 227 LPVVGSLSQVG-AIAPQSL-EPLLQSIHECLGSTDWATRKAAADALSALALHSSNLVIDG-----ATSTLTVLEACRFDK 299 (896)
Q Consensus 227 L~aIgSLA~vg-a~~~pyl-e~lLp~L~e~LsddDW~lRKaA~EaLgsLA~avGe~L~Py-----~~~~I~~LE~~RfDK 299 (896)
|..+|-++... ......+ -.+++.+...|++..-.+||.||=+|+.|...--+.+.-. ++++|+.|....|--
T Consensus 306 lR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~ 385 (526)
T COG5064 306 LRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKI 385 (526)
T ss_pred HHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 88888875322 1111011 1234555556888777999999999998865544544422 467788887666653
Q ss_pred Ch
Q 002658 300 IK 301 (896)
Q Consensus 300 vK 301 (896)
-|
T Consensus 386 kK 387 (526)
T COG5064 386 KK 387 (526)
T ss_pred HH
Confidence 34
No 58
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=97.76 E-value=0.0018 Score=79.30 Aligned_cols=229 Identities=17% Similarity=0.114 Sum_probs=170.5
Q ss_pred CHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhc-ccchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcc
Q 002658 76 SLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHS-ELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNG 154 (896)
Q Consensus 76 ~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~-d~I~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~ 154 (896)
.+..+++.+....++..+.+|-.-+..+..+-..-. ..+..+....+|.|...-.|..-.||.+..+.+-+++..+
T Consensus 434 ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~--- 510 (759)
T KOG0211|consen 434 TISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQL--- 510 (759)
T ss_pred CccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhh---
Confidence 377777777776777778888887755533322222 3366777888999998888888899999999999999888
Q ss_pred cccCCchhHhhhHHHHHH-HHhcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHH
Q 002658 155 KEENNGTVVGLFVKPLFE-AMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSL 233 (896)
Q Consensus 155 ~~e~~~~~~~~lL~pL~e-aL~Eqnk~VQ~gAasALAkIIE~a~d~~~~yL~~LlPRL~kLLks~s~kaK~alL~aIgSL 233 (896)
+. .++...+.+|+. -|.+..-.++.||+.+|.++++..+ ..-+...++|+++.+..+++|..|...+.+|..+
T Consensus 511 ~~----~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G--~~w~~~~~i~k~L~~~~q~~y~~R~t~l~si~~l 584 (759)
T KOG0211|consen 511 GV----EFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFG--SEWARLEEIPKLLAMDLQDNYLVRMTTLFSIHEL 584 (759)
T ss_pred hh----HHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhC--cchhHHHhhHHHHHHhcCcccchhhHHHHHHHHH
Confidence 21 223333333332 2344556799999999999999765 2245778999999999999999999999999999
Q ss_pred HhccccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcc-hHHHhhHHHHHHHHHhhhcCCChhhHHHHHHHHH
Q 002658 234 SQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSS-NLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQ 312 (896)
Q Consensus 234 A~vga~~~pyle~lLp~L~e~LsddDW~lRKaA~EaLgsLA~avG-e~L~Py~~~~I~~LE~~RfDKvKpVRDaA~eALe 312 (896)
+.+. .-.-+.+.++|.+.++..|....+|..|+..|..+...+. +... ..+..+++....|...-||-.|+.|+.
T Consensus 585 a~v~-g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~~~~~---~~v~pll~~L~~d~~~dvr~~a~~a~~ 660 (759)
T KOG0211|consen 585 AEVL-GQEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDESVRD---EEVLPLLETLSSDQELDVRYRAILAFG 660 (759)
T ss_pred HHHh-ccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcchHHHH---HHHHHHHHHhccCcccchhHHHHHHHH
Confidence 8754 1233567899999999999999999999999998888777 4333 334445555566888888888887777
Q ss_pred HHHHh
Q 002658 313 LWKKI 317 (896)
Q Consensus 313 ~WK~l 317 (896)
.....
T Consensus 661 ~i~l~ 665 (759)
T KOG0211|consen 661 SIELS 665 (759)
T ss_pred HHHHH
Confidence 65543
No 59
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.64 E-value=0.0051 Score=74.90 Aligned_cols=221 Identities=18% Similarity=0.127 Sum_probs=164.1
Q ss_pred cCCCChhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhH
Q 002658 88 SNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFV 167 (896)
Q Consensus 88 ~ss~k~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL 167 (896)
..++.++.|-.+++-|.-++|-....-.-+..+++...+..|+|.|+-|.--|...+..|++.+- ..++
T Consensus 736 l~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~-----------e~il 804 (982)
T KOG4653|consen 736 LHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYP-----------EDIL 804 (982)
T ss_pred hcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcc-----------hhhH
Confidence 45678999999999999999965444555678999999999999999999999999999999982 2366
Q ss_pred HHHHH-HHhcCCHh-----HHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhccc-cC
Q 002658 168 KPLFE-AMMEQNKG-----VQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVGA-IA 240 (896)
Q Consensus 168 ~pL~e-aL~Eqnk~-----VQ~gAasALAkIIE~a~d~~~~yL~~LlPRL~kLLks~s~kaK~alL~aIgSLA~vga-~~ 240 (896)
+-|.+ ...+.++. ...| .|+-++++..++....|+..|+..++..++.|...-|+..+..+|-+-..-+ ..
T Consensus 805 ~dL~e~Y~s~k~k~~~d~~lkVG--Eai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~v 882 (982)
T KOG4653|consen 805 PDLSEEYLSEKKKLQTDYRLKVG--EAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQV 882 (982)
T ss_pred HHHHHHHHhcccCCCccceehHH--HHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhh
Confidence 66666 33333222 3334 8889999998998889999999999999999988788887777777643211 11
Q ss_pred cccHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHHHHhcchHHHhhH-----HHHHHHHHhhhcCCChhhHHHHHHHHHHH
Q 002658 241 PQSLEPLLQSIHECL-GSTDWATRKAAADALSALALHSSNLVIDGA-----TSTLTVLEACRFDKIKPVRDSMNEALQLW 314 (896)
Q Consensus 241 ~pyle~lLp~L~e~L-sddDW~lRKaA~EaLgsLA~avGe~L~Py~-----~~~I~~LE~~RfDKvKpVRDaA~eALe~W 314 (896)
...|-.++..+.... +|....+|++|+..+..+....|+.+.|+. +-....+...|.+...-+|=-+..+++..
T Consensus 883 sd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~leei 962 (982)
T KOG4653|consen 883 SDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEEI 962 (982)
T ss_pred hHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 225556666666654 456789999999999999999997777754 22233445666666666776767777777
Q ss_pred HHhccCC
Q 002658 315 KKIAGKV 321 (896)
Q Consensus 315 K~la~~~ 321 (896)
..+...+
T Consensus 963 ~a~l~n~ 969 (982)
T KOG4653|consen 963 QAALEND 969 (982)
T ss_pred HHHHHhc
Confidence 6666543
No 60
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=97.61 E-value=0.0015 Score=75.23 Aligned_cols=195 Identities=15% Similarity=0.188 Sum_probs=141.6
Q ss_pred HHHHHHcCC---ChhHHHHHHHHHHHHHhc--CC--CCCHHHHHHHHhhhcCC-CChhhHHHHHHHHHHHHHHhcccchh
Q 002658 45 ILTSLSKLA---DRDTHQIAIEDLEKTIQT--LS--QESLPMLLNCLYESSND-PKPAVKKESVRLLALVCELHSELTST 116 (896)
Q Consensus 45 ll~~L~KLs---DRDT~k~Aa~eLD~La~~--L~--pd~Lp~fLs~L~es~ss-~k~~vRKeAIllLG~IAeg~~d~I~P 116 (896)
+...|.++. --+-++.|+.+|-.+... ++ .+-|.-+|..+++.+.+ .+...|+.|+++|.-+++..+..+..
T Consensus 288 v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~D 367 (516)
T KOG2956|consen 288 VADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFD 367 (516)
T ss_pred HHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhc
Confidence 344455552 345788899989888862 11 11277778888888766 67888999999999999999999999
Q ss_pred hHHHHHHHHHHhhcCCCh-HHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHh
Q 002658 117 HVTKIISHIVKRLKDSDS-GMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVEC 195 (896)
Q Consensus 117 ~LpkIL~~IlrrLkDpDs-~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~ 195 (896)
+-+-.+..++..-+|++. .+|.|.-+++..++.+. +. .-+..+.+.|+. +..|. -.++.-++.+++|.
T Consensus 368 stE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~---P~----~~I~~i~~~Ilt---~D~~~-~~~~iKm~Tkl~e~ 436 (516)
T KOG2956|consen 368 STEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHL---PL----QCIVNISPLILT---ADEPR-AVAVIKMLTKLFER 436 (516)
T ss_pred hHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhC---ch----hHHHHHhhHHhc---CcchH-HHHHHHHHHHHHhh
Confidence 988888999999999877 55777777788888887 32 123333333322 33333 23456699999998
Q ss_pred cC-CCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHH-hcc-ccCcccHHHHHHH
Q 002658 196 AS-DPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLS-QVG-AIAPQSLEPLLQS 250 (896)
Q Consensus 196 a~-d~~~~yL~~LlPRL~kLLks~s~kaK~alL~aIgSLA-~vg-a~~~pyle~lLp~ 250 (896)
.. +.....++.++|-+++..++.+.-+|..++=|+-++. .+| ..+.||++.+=..
T Consensus 437 l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~~mePhL~~Lt~s 494 (516)
T KOG2956|consen 437 LSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGMEEMEPHLEQLTSS 494 (516)
T ss_pred cCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHHhhhhHhhhccHH
Confidence 64 3445789999999999999998888887777777774 688 7888998876443
No 61
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=97.61 E-value=0.007 Score=75.80 Aligned_cols=258 Identities=17% Similarity=0.218 Sum_probs=169.5
Q ss_pred CChhHHHHHHHHHHHHHh---cCCCCCHHHHHHHHhhhc----CC-CChhhHHHHHHHHHHHHHHhcccc----------
Q 002658 53 ADRDTHQIAIEDLEKTIQ---TLSQESLPMLLNCLYESS----ND-PKPAVKKESVRLLALVCELHSELT---------- 114 (896)
Q Consensus 53 sDRDT~k~Aa~eLD~La~---~L~pd~Lp~fLs~L~es~----ss-~k~~vRKeAIllLG~IAeg~~d~I---------- 114 (896)
++.+.|..|+..|-++.. .+++..-..|-.+|+..+ .+ ....+|-+.-..|+.+|.....++
T Consensus 474 s~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g 553 (1431)
T KOG1240|consen 474 SEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAG 553 (1431)
T ss_pred chHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcc
Confidence 345678888887776654 456655455555554443 33 556677775555555555422110
Q ss_pred ---------------hhh---HHHHHH-HHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHh
Q 002658 115 ---------------STH---VTKIIS-HIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMM 175 (896)
Q Consensus 115 ---------------~P~---LpkIL~-~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~ 175 (896)
..+ |.+++. .+...|.|+++.||.+-.+.|+.|+....+.. .-+.+|.-|+..|.
T Consensus 554 ~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~k------sND~iLshLiTfLN 627 (1431)
T KOG1240|consen 554 MLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEK------SNDVILSHLITFLN 627 (1431)
T ss_pred cccCcccccccccccchHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcc------cccchHHHHHHHhc
Confidence 012 333333 45566999999999999999999999996542 24568899999999
Q ss_pred cCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhccccCcccHHHHHHHHHHhh
Q 002658 176 EQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECL 255 (896)
Q Consensus 176 Eqnk~VQ~gAasALAkIIE~a~d~~~~yL~~LlPRL~kLLks~s~kaK~alL~aIgSLA~vga~~~pyle~lLp~L~e~L 255 (896)
+.++..-.+=+-.+.-++=..+.. ..=+.|+|-|...|.++-.-+-..+|.|+..++..|-.-.+++-.++.....+|
T Consensus 628 DkDw~LR~aFfdsI~gvsi~VG~r--s~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~~i~~~v~PlL 705 (1431)
T KOG1240|consen 628 DKDWRLRGAFFDSIVGVSIFVGWR--SVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVKDILQDVLPLL 705 (1431)
T ss_pred CccHHHHHHHHhhccceEEEEeee--eHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHHHHHHhhhhhe
Confidence 888888754443333322222221 112357888888888876666666777888888777666889999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcc--h-------HHHhhHHHHH------HHHHhhhcCCChhhHHHHHHHH-------HH
Q 002658 256 GSTDWATRKAAADALSALALHSS--N-------LVIDGATSTL------TVLEACRFDKIKPVRDSMNEAL-------QL 313 (896)
Q Consensus 256 sddDW~lRKaA~EaLgsLA~avG--e-------~L~Py~~~~I------~~LE~~RfDKvKpVRDaA~eAL-------e~ 313 (896)
-.++.=+|.++|..|.+++..++ | .+.||+..-+ +.|..|..+-+. |.+-+..| .|
T Consensus 706 ~hPN~WIR~~~~~iI~~~~~~ls~advyc~l~P~irpfl~~~v~~i~s~~~LlsclkpPVs--Rsv~~~l~r~~~ens~f 783 (1431)
T KOG1240|consen 706 CHPNLWIRRAVLGIIAAIARQLSAADVYCKLMPLIRPFLERPVIQIESKEVLLSCLKPPVS--RSVFNQLLRWSDENSSF 783 (1431)
T ss_pred eCchHHHHHHHHHHHHHHHhhhhhhhheEEeehhhHHhhhccHhhhcchHHHHHHhcCCCc--HHHHHHHHHHhhcchHH
Confidence 99887799999999999998877 2 4556654332 234566655553 44433333 46
Q ss_pred HHHhccC
Q 002658 314 WKKIAGK 320 (896)
Q Consensus 314 WK~la~~ 320 (896)
|+.+-..
T Consensus 784 ~k~l~~~ 790 (1431)
T KOG1240|consen 784 WKKLLER 790 (1431)
T ss_pred HHHHHHH
Confidence 7766544
No 62
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=97.60 E-value=0.00081 Score=69.56 Aligned_cols=142 Identities=15% Similarity=0.218 Sum_probs=104.5
Q ss_pred hHHHHHHHHHHHHHHhc-ccchhhHHHHHHHH------------HHhhcCCChHHHHHHHHHHHHHHHHHhcc------c
Q 002658 95 VKKESVRLLALVCELHS-ELTSTHVTKIISHI------------VKRLKDSDSGMKEACRDSIGSLSKLYLNG------K 155 (896)
Q Consensus 95 vRKeAIllLG~IAeg~~-d~I~P~LpkIL~~I------------lrrLkDpDs~VR~Ac~~aLG~LA~~li~~------~ 155 (896)
+|-.|+.+|..+++... ..+-.|++.++|.. .-.|+||++.||.+++.++..|-+.. ++ .
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gs-k~~L~~Ae~ 80 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGS-KPFLAQAEE 80 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHcc-HHHHHHHHh
Confidence 57777777777777733 44666777776644 44588999999999999999887654 21 1
Q ss_pred ccCCc-----------hhHhhhHHHHHHHH-hcCCHhHHHHHHHHHHHHHHhcCC--CCchhHHHHHHHHHHHhcCCchh
Q 002658 156 EENNG-----------TVVGLFVKPLFEAM-MEQNKGVQSGAAMCMAKMVECASD--PPVVAFQKLCARICKLLSNQNFM 221 (896)
Q Consensus 156 ~e~~~-----------~~~~~lL~pL~eaL-~Eqnk~VQ~gAasALAkIIE~a~d--~~~~yL~~LlPRL~kLLks~s~k 221 (896)
..+.. ..+-++=..|+.+| .|++..+....+-||+.+|++.+. ...+++.+++..+.+++.+.+..
T Consensus 81 ~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~ 160 (182)
T PF13251_consen 81 SKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPN 160 (182)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCc
Confidence 11000 12333334455555 477888999999999999999854 44578999999999999998888
Q ss_pred hHHHHHHHHHHHHhcc
Q 002658 222 AKASLLPVVGSLSQVG 237 (896)
Q Consensus 222 aK~alL~aIgSLA~vg 237 (896)
++.+++.|+|+++.+.
T Consensus 161 v~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 161 VRVAALSCLGALLSVQ 176 (182)
T ss_pred HHHHHHHHHHHHHcCC
Confidence 9999999999997654
No 63
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=97.53 E-value=0.002 Score=78.72 Aligned_cols=248 Identities=15% Similarity=0.155 Sum_probs=168.8
Q ss_pred HHHHHHhcC-CCCCHHHHHHHHhhhcCCC-----ChhhHHHHHHHHHHHH-----HHhcccchhhHHHHHHHHHHhhcCC
Q 002658 64 DLEKTIQTL-SQESLPMLLNCLYESSNDP-----KPAVKKESVRLLALVC-----ELHSELTSTHVTKIISHIVKRLKDS 132 (896)
Q Consensus 64 eLD~La~~L-~pd~Lp~fLs~L~es~ss~-----k~~vRKeAIllLG~IA-----eg~~d~I~P~LpkIL~~IlrrLkDp 132 (896)
.+..+++.. ..+.+..++...+-+-... ....+..++-.+.-+- +.|++.. .|-..++..|++|
T Consensus 753 ~~k~~~~~~~~~~~~~~l~~~~~vs~~~v~~y~gs~dls~~al~~l~Wv~KaLl~R~~~~s~-----~ia~klld~Ls~~ 827 (1030)
T KOG1967|consen 753 ALKTTANLKLKEEAIRQLFSAKFVSEKKVENYCGSLDLSEIALTVLAWVTKALLLRNHPESS-----EIAEKLLDLLSGP 827 (1030)
T ss_pred chhhhhhhhcccHHHHHHHHHHhhhhHhHhhccCCcchhhHHHHHHHHHHHHHHHcCCcccc-----hHHHHHHHhcCCc
Confidence 334444432 2334666666655332100 1223555555554443 3344432 2334456667664
Q ss_pred ChHHHHHHHHHHHHHHHHHhcc-cccCC--------chhHhhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCC-Cch
Q 002658 133 DSGMKEACRDSIGSLSKLYLNG-KEENN--------GTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDP-PVV 202 (896)
Q Consensus 133 Ds~VR~Ac~~aLG~LA~~li~~-~~e~~--------~~~~~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~a~d~-~~~ 202 (896)
.+-..+.+++..++...... ...++ ...+..++|.|.+......-.+.--=..+|..++-+.+.+ ..|
T Consensus 828 --~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp 905 (1030)
T KOG1967|consen 828 --STGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFFCDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLP 905 (1030)
T ss_pred --cccchHHHhhHhhhccChHHhhhccccchhHHHHHHHHHhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhcc
Confidence 45566666666665544221 00011 1235556666666664222222222356788888877654 357
Q ss_pred hHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHh-ccccCcccHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHHHHhcc
Q 002658 203 AFQKLCARICKLLSNQNFMAKASLLPVVGSLSQ-VGAIAPQSLEPLLQSIHECLGSTD---WATRKAAADALSALALHSS 278 (896)
Q Consensus 203 yL~~LlPRL~kLLks~s~kaK~alL~aIgSLA~-vga~~~pyle~lLp~L~e~LsddD---W~lRKaA~EaLgsLA~avG 278 (896)
.++.|+|-|++.|.-++.-+|...+.+|..+.. .+.....|++.++|.++..=.+.| ..+|..|++||+.|...+|
T Consensus 906 ~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P 985 (1030)
T KOG1967|consen 906 QFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLP 985 (1030)
T ss_pred chhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCC
Confidence 899999999999999999999999999988754 446678999999999999877655 7899999999999999999
Q ss_pred -hHHHhhHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHhc
Q 002658 279 -NLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQLWKKIA 318 (896)
Q Consensus 279 -e~L~Py~~~~I~~LE~~RfDKvKpVRDaA~eALe~WK~la 318 (896)
..+.||.+.+|++|.-+.-||-+-||.-|..+=+-|-.+.
T Consensus 986 ~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~W~~l~ 1026 (1030)
T KOG1967|consen 986 TKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQNWYMLG 1026 (1030)
T ss_pred CcccccccHHHHHHhhhccCcHHHHHHHHHHHHhhhhhhcc
Confidence 8899999999999999999999999999999999998876
No 64
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.50 E-value=0.0014 Score=75.46 Aligned_cols=151 Identities=18% Similarity=0.126 Sum_probs=98.7
Q ss_pred HHHHHHHHHhh-cCCChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcC
Q 002658 119 TKIISHIVKRL-KDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECAS 197 (896)
Q Consensus 119 pkIL~~IlrrL-kDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~a~ 197 (896)
+..++.++..| .|+++.|+.+|+.++... + -+..+..|+++|.+.++.|..+++.+|..+-.
T Consensus 53 ~~a~~~L~~aL~~d~~~ev~~~aa~al~~~-----~---------~~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~--- 115 (410)
T TIGR02270 53 KAATELLVSALAEADEPGRVACAALALLAQ-----E---------DALDLRSVLAVLQAGPEGLCAGIQAALGWLGG--- 115 (410)
T ss_pred HhHHHHHHHHHhhCCChhHHHHHHHHHhcc-----C---------ChHHHHHHHHHhcCCCHHHHHHHHHHHhcCCc---
Confidence 34467778888 577788877666555311 0 11247788888888888888888888875332
Q ss_pred CCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhccccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhc
Q 002658 198 DPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHS 277 (896)
Q Consensus 198 d~~~~yL~~LlPRL~kLLks~s~kaK~alL~aIgSLA~vga~~~pyle~lLp~L~e~LsddDW~lRKaA~EaLgsLA~av 277 (896)
+...+.|+++|++.+..+|.+++.+++-. +. ...+.|..+|.+.+..+|..|+.+|+.|....
T Consensus 116 -------~~a~~~L~~~L~~~~p~vR~aal~al~~r---~~-------~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~~ 178 (410)
T TIGR02270 116 -------RQAEPWLEPLLAASEPPGRAIGLAALGAH---RH-------DPGPALEAALTHEDALVRAAALRALGELPRRL 178 (410)
T ss_pred -------hHHHHHHHHHhcCCChHHHHHHHHHHHhh---cc-------ChHHHHHHHhcCCCHHHHHHHHHHHHhhcccc
Confidence 34677788888888888887766555542 10 12345666677888888888888888766432
Q ss_pred chHHHhhHHHHHHHHHhhhcCCChhhHHHHHHHHHH
Q 002658 278 SNLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQL 313 (896)
Q Consensus 278 Ge~L~Py~~~~I~~LE~~RfDKvKpVRDaA~eALe~ 313 (896)
. +..|...+.|.++.||..|+.++-.
T Consensus 179 a----------~~~L~~al~d~~~~VR~aA~~al~~ 204 (410)
T TIGR02270 179 S----------ESTLRLYLRDSDPEVRFAALEAGLL 204 (410)
T ss_pred c----------hHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 1 1112233668888888888777733
No 65
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.48 E-value=0.0014 Score=73.45 Aligned_cols=227 Identities=19% Similarity=0.182 Sum_probs=148.1
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHHHhc------CCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccchhh-
Q 002658 45 ILTSLSKLADRDTHQIAIEDLEKTIQT------LSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTH- 117 (896)
Q Consensus 45 ll~~L~KLsDRDT~k~Aa~eLD~La~~------L~pd~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I~P~- 117 (896)
++-.|.+.+|.|.+-.++..|-.|+-. |-. .=|.+++.|.+-+.+..+.++=.|.++|++++.-. ++..|-
T Consensus 212 vLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laq-aep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt-~Yq~eiv 289 (550)
T KOG4224|consen 212 VLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQ-AEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDT-EYQREIV 289 (550)
T ss_pred hhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHh-cccchHHHHHHHHhCCChHHHHHHHHHHhhhcccc-hhhhHHH
Confidence 455677889999988888877665531 211 12344555655566777889999999999998632 222221
Q ss_pred HHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHh-cCCHhHHHHHHHHHHHHHHhc
Q 002658 118 VTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMM-EQNKGVQSGAAMCMAKMVECA 196 (896)
Q Consensus 118 LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~-Eqnk~VQ~gAasALAkIIE~a 196 (896)
-.-=+|.+++.|++|--..--+.+.+|..|+-+=..+.. =.-.-||+||...|. ..|..+|-+|...|-.+--..
T Consensus 290 ~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~l----I~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAass 365 (550)
T KOG4224|consen 290 EAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVL----IADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASS 365 (550)
T ss_pred hcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcccc----eecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhh
Confidence 112256777888887654444555556555544322211 112348999999995 568889999999888776544
Q ss_pred CCCCchhHH-HHHHHHHHHhcCCchhhHHHHHHHHHHHHhccccCcccH-H-HHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 002658 197 SDPPVVAFQ-KLCARICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSL-E-PLLQSIHECLGSTDWATRKAAADALSAL 273 (896)
Q Consensus 197 ~d~~~~yL~-~LlPRL~kLLks~s~kaK~alL~aIgSLA~vga~~~pyl-e-~lLp~L~e~LsddDW~lRKaA~EaLgsL 273 (896)
..-...+.+ --+|++..++-+....++.-+-.||..++-.. .+..|| + .++|.|++.+.+.+-++|.-|+++|+.+
T Consensus 366 e~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~d-~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nl 444 (550)
T KOG4224|consen 366 EHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALND-NDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINL 444 (550)
T ss_pred hhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhcc-ccHHHHhhcCCcceeecccCccchhhcccHHHHHHhh
Confidence 333333333 26788899888776666766666777665322 122222 1 3678888899999999999999999998
Q ss_pred HHhcc
Q 002658 274 ALHSS 278 (896)
Q Consensus 274 A~avG 278 (896)
..-+.
T Consensus 445 ss~v~ 449 (550)
T KOG4224|consen 445 SSDVE 449 (550)
T ss_pred hhhhH
Confidence 87664
No 66
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.47 E-value=0.00057 Score=60.24 Aligned_cols=86 Identities=17% Similarity=0.300 Sum_probs=67.8
Q ss_pred HHHHHHhh-cCCChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCC
Q 002658 122 ISHIVKRL-KDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPP 200 (896)
Q Consensus 122 L~~IlrrL-kDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~a~d~~ 200 (896)
|+.+++.| +|+++.||..+++++|.+ + .+.+++.|++.+.++++.|+..|+.+|..+=
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~-------~-------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGEL-------G-------DPEAIPALIELLKDEDPMVRRAAARALGRIG------- 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCC-------T-------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH-------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHc-------C-------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC-------
Confidence 57788888 999999999999999922 1 3468889999999999999999999999772
Q ss_pred chhHHHHHHHHHHHhcCC-chhhHHHHHHHHH
Q 002658 201 VVAFQKLCARICKLLSNQ-NFMAKASLLPVVG 231 (896)
Q Consensus 201 ~~yL~~LlPRL~kLLks~-s~kaK~alL~aIg 231 (896)
-+..++.|.+++.++ ...+|..++.+||
T Consensus 60 ---~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 ---DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp ---HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred ---CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 245778888888774 4556777777765
No 67
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.46 E-value=0.0051 Score=70.97 Aligned_cols=163 Identities=12% Similarity=0.077 Sum_probs=114.2
Q ss_pred HHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhhcCCChHHHHHHHHHH
Q 002658 65 LEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSI 144 (896)
Q Consensus 65 LD~La~~L~pd~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aL 144 (896)
||-+... ++..+..++..|.+ +..+.++..+.++|..... +..+..++..|.|+++.||.++..++
T Consensus 45 LdgL~~~-G~~a~~~L~~aL~~---d~~~ev~~~aa~al~~~~~----------~~~~~~L~~~L~d~~~~vr~aaa~AL 110 (410)
T TIGR02270 45 VDGLVLA-GKAATELLVSALAE---ADEPGRVACAALALLAQED----------ALDLRSVLAVLQAGPEGLCAGIQAAL 110 (410)
T ss_pred HHHHHHh-hHhHHHHHHHHHhh---CCChhHHHHHHHHHhccCC----------hHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 5554431 34446666666642 3446677766665532211 11377889999999999999999999
Q ss_pred HHHHHHHhcccccCCchhHhhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchhhHH
Q 002658 145 GSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKA 224 (896)
Q Consensus 145 G~LA~~li~~~~e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~a~d~~~~yL~~LlPRL~kLLks~s~kaK~ 224 (896)
|. + + .+.....|...|.+.++.|+.++..++...... -.+.+.++|++.++.++.
T Consensus 111 g~----i---~-------~~~a~~~L~~~L~~~~p~vR~aal~al~~r~~~-----------~~~~L~~~L~d~d~~Vra 165 (410)
T TIGR02270 111 GW----L---G-------GRQAEPWLEPLLAASEPPGRAIGLAALGAHRHD-----------PGPALEAALTHEDALVRA 165 (410)
T ss_pred hc----C---C-------chHHHHHHHHHhcCCChHHHHHHHHHHHhhccC-----------hHHHHHHHhcCCCHHHHH
Confidence 83 2 1 345677888888888999998887776663221 235678888999999999
Q ss_pred HHHHHHHHHHhccccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 002658 225 SLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALAL 275 (896)
Q Consensus 225 alL~aIgSLA~vga~~~pyle~lLp~L~e~LsddDW~lRKaA~EaLgsLA~ 275 (896)
.++.++|.+-.. ..++.|...+.+.+..+|.+|+.+|+.+..
T Consensus 166 ~A~raLG~l~~~---------~a~~~L~~al~d~~~~VR~aA~~al~~lG~ 207 (410)
T TIGR02270 166 AALRALGELPRR---------LSESTLRLYLRDSDPEVRFAALEAGLLAGS 207 (410)
T ss_pred HHHHHHHhhccc---------cchHHHHHHHcCCCHHHHHHHHHHHHHcCC
Confidence 999999887321 334556677999999999999999977643
No 68
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=97.41 E-value=0.053 Score=59.64 Aligned_cols=133 Identities=22% Similarity=0.243 Sum_probs=96.7
Q ss_pred HHHHHHHHHHhcCCCCC-HHHHHHHH-hhhcCCCChhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhhcCCChHHH
Q 002658 60 IAIEDLEKTIQTLSQES-LPMLLNCL-YESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMK 137 (896)
Q Consensus 60 ~Aa~eLD~La~~L~pd~-Lp~fLs~L-~es~ss~k~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrLkDpDs~VR 137 (896)
++...|+.+...+.+.. +..++..| .....+.++.+|+.|+.+||..+-...+....|++-++..+.+ .+..|+
T Consensus 6 i~~~lL~~~~~~~~~~~~l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~----~~~~v~ 81 (298)
T PF12719_consen 6 ITQSLLENVSSSLSPNISLESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQK----DDEEVK 81 (298)
T ss_pred HHHHHHHhccccCCCcchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHh----CCHHHH
Confidence 34445666655555533 55666544 5777888999999999999999998888888888776666522 388999
Q ss_pred HHHHHHHHHHHHHHhcccccCC-----chhHhhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhc
Q 002658 138 EACRDSIGSLSKLYLNGKEENN-----GTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECA 196 (896)
Q Consensus 138 ~Ac~~aLG~LA~~li~~~~e~~-----~~~~~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~a 196 (896)
.+|..++.-+.-..-...++.. ......+++.+...|...++.+|..|+.+|+|+.=.-
T Consensus 82 ~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~ 145 (298)
T PF12719_consen 82 ITALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSG 145 (298)
T ss_pred HHHHHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcC
Confidence 9999998888876622111111 1224568888888997779999999999999998764
No 69
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=97.39 E-value=0.015 Score=71.27 Aligned_cols=239 Identities=18% Similarity=0.149 Sum_probs=158.8
Q ss_pred HHHHHHHHHHcC--CChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccch---
Q 002658 41 MKQKILTSLSKL--ADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTS--- 115 (896)
Q Consensus 41 Lk~rll~~L~KL--sDRDT~k~Aa~eLD~La~~L~pd~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I~--- 115 (896)
+|+.++.+|..+ +|..++.+|-..|..+-. ++.|-..|.-+.-.. ...-+.|+.|+..|....+.|+-...
T Consensus 2 ~~~~ii~~L~~~ls~d~~vr~~AE~~l~qle~---~~~f~~aL~~va~~~-~~sl~lRQ~A~v~L~~yie~hW~~~~E~f 77 (1005)
T KOG2274|consen 2 VKQAIIELLSGSLSADQNVRSQAETQLKQLEL---TEGFGVALAEVAANK-DASLPLRQIALVLLKRYIEKHWSPNFEAF 77 (1005)
T ss_pred cHHHHHHHHHhhcCCChhHHHHHHHHHhcccc---chHHHHHHHHHHhCc-ccCchHHHHHHHHHHHHHHHhCCChHhhc
Confidence 578899999877 788888888877775543 333444444443222 23456789999999999999884321
Q ss_pred --h------hHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhcCCHhHHHHHHH
Q 002658 116 --T------HVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAM 187 (896)
Q Consensus 116 --P------~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAas 187 (896)
| --..|...++..|-|+...+|.++..++..++.+-.- +.|+++++.++++|...|.+.--||..
T Consensus 78 r~~~~~~e~~K~~IRe~Ll~~l~~sn~ki~~~vay~is~Ia~~D~P-------d~WpElv~~i~~~l~~~n~n~i~~am~ 150 (1005)
T KOG2274|consen 78 RYPLIVSEEVKALIREQLLNLLDDSNSKIRSAVAYAISSIAAVDYP-------DEWPELVPFILKLLSSGNENSIHGAMR 150 (1005)
T ss_pred cCCCcccHHHHHHHHHHHHhhhhccccccchHHHHHHHHHHhccCc-------hhhHHHHHHHHHHHhccchhhhhhHHH
Confidence 1 1234555667777799999999999999999998732 449999999999998888888899999
Q ss_pred HHHHHHHhcC-CCC---chhHHHHHHHHHHHhcCCchhhHH--HHHHHHHHH---Hh-cc----ccCcccHHHHHHHHHH
Q 002658 188 CMAKMVECAS-DPP---VVAFQKLCARICKLLSNQNFMAKA--SLLPVVGSL---SQ-VG----AIAPQSLEPLLQSIHE 253 (896)
Q Consensus 188 ALAkIIE~a~-d~~---~~yL~~LlPRL~kLLks~s~kaK~--alL~aIgSL---A~-vg----a~~~pyle~lLp~L~e 253 (896)
||+.+..... +.+ .+..-.=|-+++++....+...+. +.+....++ +. .+ +.....+..+|+...+
T Consensus 151 vL~el~~ev~~ee~~~~~~~~l~~m~~~f~~~~~~s~~~~~~aa~~~lf~sc~~li~~~~e~~~~~~~~~~s~~l~~~~~ 230 (1005)
T KOG2274|consen 151 VLAELSDEVDVEEMFFVGPVSLAEMYRIFALTIVYSIITRLGAARGKLFTSCLTLITNVEEVWAEHVKVFLSQILNQFMD 230 (1005)
T ss_pred HHHHHHHHHHHHHHhcccccchhhhhhhhhhccccchhHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999997742 111 122112234556666655444333 322222222 21 12 1223344444444444
Q ss_pred hhCC-------CCHHHHHHHHHHHHHHHHhcchHHHhhHHHHHH
Q 002658 254 CLGS-------TDWATRKAAADALSALALHSSNLVIDGATSTLT 290 (896)
Q Consensus 254 ~Lsd-------dDW~lRKaA~EaLgsLA~avGe~L~Py~~~~I~ 290 (896)
.+.. .+|.+|...+.++..+....+..+.||+.....
T Consensus 231 ~l~h~l~~~~g~~~~~~~eilk~~t~l~~nfp~~~~~~~~~~~~ 274 (1005)
T KOG2274|consen 231 ILEHPLQRNDGSDFSLRMEILKCLTQLVENFPSLINPFMMGMFS 274 (1005)
T ss_pred HHhhhhcccccchHHHHHHHHHHHHHHHHhhHHhhhHHHHhhhh
Confidence 3322 579999999999999999999888888765544
No 70
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=97.38 E-value=0.016 Score=68.32 Aligned_cols=239 Identities=20% Similarity=0.228 Sum_probs=137.0
Q ss_pred HHHHHHHHHHhc-CCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccch---hhHHHHH-------------
Q 002658 60 IAIEDLEKTIQT-LSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTS---THVTKII------------- 122 (896)
Q Consensus 60 ~Aa~eLD~La~~-L~pd~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I~---P~LpkIL------------- 122 (896)
-++..+-.++.. +.++.+.+..+.|...+.++....|-+|++.|..++-.++..+. +.++.++
T Consensus 283 E~Ar~v~~~~~~nv~~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vcN~evEsLIsd~Nr~IstyAIT 362 (898)
T COG5240 283 EAARAVCALSEENVGSQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVCNKEVESLISDENRTISTYAIT 362 (898)
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeecChhHHHHhhcccccchHHHHH
Confidence 334444444433 46666888888888888888999999999999999988776532 2233332
Q ss_pred ---------------HHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHh-cCCHhHHHHHH
Q 002658 123 ---------------SHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMM-EQNKGVQSGAA 186 (896)
Q Consensus 123 ---------------~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~-Eqnk~VQ~gAa 186 (896)
..|...+.|-.-...-++.+++..|+-... ..|..++.-|...|. +-.-.-..++.
T Consensus 363 tLLKTGt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp--------~k~~s~l~FL~~~L~~eGg~eFK~~~V 434 (898)
T COG5240 363 TLLKTGTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFP--------SKKLSYLDFLGSSLLQEGGLEFKKYMV 434 (898)
T ss_pred HHHHcCchhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCc--------HHHHHHHHHHHHHHHhcccchHHHHHH
Confidence 222222222222222233333443333331 224555555555552 22333344455
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhccccCcccHHHHHHHHHHhhCCCCHHHHHHH
Q 002658 187 MCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAA 266 (896)
Q Consensus 187 sALAkIIE~a~d~~~~yL~~LlPRL~kLLks~s~kaK~alL~aIgSLA~vga~~~pyle~lLp~L~e~LsddDW~lRKaA 266 (896)
-|+..+++..++.-.-.|..||. .+.+--| -..++..++-+-.-|... +.=..++..+.+.+.-++--+|.+|
T Consensus 435 daisd~~~~~p~skEraLe~LC~----fIEDcey--~~I~vrIL~iLG~EgP~a-~~P~~yvrhIyNR~iLEN~ivRsaA 507 (898)
T COG5240 435 DAISDAMENDPDSKERALEVLCT----FIEDCEY--HQITVRILGILGREGPRA-KTPGKYVRHIYNRLILENNIVRSAA 507 (898)
T ss_pred HHHHHHHhhCchHHHHHHHHHHH----HHhhcch--hHHHHHHHHHhcccCCCC-CCcchHHHHHHHHHHHhhhHHHHHH
Confidence 56666666544332223333433 3332222 223444444443223111 1112345555566666677899999
Q ss_pred HHHHHHHHHhcchHHHhhHHHHHHHHHhhhcCCChhhHHHHHHHHHHHH
Q 002658 267 ADALSALALHSSNLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQLWK 315 (896)
Q Consensus 267 ~EaLgsLA~avGe~L~Py~~~~I~~LE~~RfDKvKpVRDaA~eALe~WK 315 (896)
+.||...|....+.+.| .++..+|..|..|++++|||-|.=++.+..
T Consensus 508 v~aLskf~ln~~d~~~~--~sv~~~lkRclnD~DdeVRdrAsf~l~~~~ 554 (898)
T COG5240 508 VQALSKFALNISDVVSP--QSVENALKRCLNDQDDEVRDRASFLLRNMR 554 (898)
T ss_pred HHHHHHhccCccccccH--HHHHHHHHHHhhcccHHHHHHHHHHHHhhh
Confidence 99999999998886654 567778999999999999998766666654
No 71
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=97.36 E-value=0.022 Score=63.36 Aligned_cols=199 Identities=20% Similarity=0.179 Sum_probs=135.8
Q ss_pred HHHHHHHHHHhhcCCChHHHHHHHHHHHHHH-HHHhcccccCCchhHhhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhc
Q 002658 118 VTKIISHIVKRLKDSDSGMKEACRDSIGSLS-KLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECA 196 (896)
Q Consensus 118 LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA-~~li~~~~e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~a 196 (896)
+..-+.-.+..|.|.....|.++...|-.+. .++.. +........++..+...|.-....-|.-|+.+++-++=..
T Consensus 41 ~e~~L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~---d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltl 117 (309)
T PF05004_consen 41 LEDKLKEAIDLLTEKSSSTREAALEALIRALSSRYLP---DFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTL 117 (309)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccH---HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhc
Confidence 3444556777888999999999999876665 33311 1223446667777777773333355666666666665443
Q ss_pred --CCCCchhHHHHHHHHHHHhcCC--chhhHHHHHHHHHHHHhccccCcccHHHHHHHHH---H--hhCC----------
Q 002658 197 --SDPPVVAFQKLCARICKLLSNQ--NFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIH---E--CLGS---------- 257 (896)
Q Consensus 197 --~d~~~~yL~~LlPRL~kLLks~--s~kaK~alL~aIgSLA~vga~~~pyle~lLp~L~---e--~Lsd---------- 257 (896)
+.....++..+.|.|.+++.+. +.++|.+++.|++-+.-++..-..-+..+|.+|. . +++.
T Consensus 118 g~g~~~~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~ 197 (309)
T PF05004_consen 118 GAGEDSEEIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAE 197 (309)
T ss_pred CCCccHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCC
Confidence 3445578999999999999875 4577888888888875444222333443333332 2 2222
Q ss_pred CCHHHHHHHHHHHHHHHHhcc-hHHHhhHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHhcc
Q 002658 258 TDWATRKAAADALSALALHSS-NLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQLWKKIAG 319 (896)
Q Consensus 258 dDW~lRKaA~EaLgsLA~avG-e~L~Py~~~~I~~LE~~RfDKvKpVRDaA~eALe~WK~la~ 319 (896)
++..+..+|+.+.+.|+..++ ..+..+....+..|-.+..-.+..||-+|=|+|-+.=++..
T Consensus 198 ~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~ 260 (309)
T PF05004_consen 198 DDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELAR 260 (309)
T ss_pred CccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh
Confidence 246799999999999999999 45777777788877766666777899999999998877775
No 72
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.35 E-value=0.0096 Score=60.73 Aligned_cols=110 Identities=19% Similarity=0.200 Sum_probs=83.4
Q ss_pred hHHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhhcCCChH
Q 002658 56 DTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSG 135 (896)
Q Consensus 56 DT~k~Aa~eLD~La~~L~pd~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrLkDpDs~ 135 (896)
..+.-++-.|--+...+ |..+.++++.|...+.++++.+|+.|+.+|..+.....-.+. +.++..++..|.|+++.
T Consensus 3 ~vR~n~i~~l~DL~~r~-~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k---~~l~~~~l~~l~D~~~~ 78 (178)
T PF12717_consen 3 SVRNNAIIALGDLCIRY-PNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVK---GQLFSRILKLLVDENPE 78 (178)
T ss_pred HHHHHHHHHHHHHHHhC-cHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeeh---hhhhHHHHHHHcCCCHH
Confidence 44555666666555555 447889999999999999999999999999998875443444 44477778888999999
Q ss_pred HHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhc
Q 002658 136 MKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMME 176 (896)
Q Consensus 136 VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~E 176 (896)
||+.|...+..+.... .+ ..+...++.++-.|..
T Consensus 79 Ir~~A~~~~~e~~~~~-~~------~~i~~~~~e~i~~l~~ 112 (178)
T PF12717_consen 79 IRSLARSFFSELLKKR-NP------NIIYNNFPELISSLNN 112 (178)
T ss_pred HHHHHHHHHHHHHHhc-cc------hHHHHHHHHHHHHHhC
Confidence 9999999999988885 11 3356677777777754
No 73
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=97.35 E-value=0.0084 Score=73.65 Aligned_cols=253 Identities=16% Similarity=0.214 Sum_probs=157.1
Q ss_pred HHHHHHHHcC-CChhH--HHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHH-HHHHHHHHHHHHhcccchhhH
Q 002658 43 QKILTSLSKL-ADRDT--HQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKK-ESVRLLALVCELHSELTSTHV 118 (896)
Q Consensus 43 ~rll~~L~KL-sDRDT--~k~Aa~eLD~La~~L~pd~Lp~fLs~L~es~ss~k~~vRK-eAIllLG~IAeg~~d~I~P~L 118 (896)
.-++..|-.+ .+.+| ++-+++.|-.++..++.+.+--.+..+.......+|...+ .+.-+++...-...+ .+--
T Consensus 158 ~~ll~~le~l~~~eet~vr~k~ve~l~~v~~~~~~~~~~~~lv~l~~~l~~~d~~~sr~sacglf~~~~~~~~~--~~vk 235 (759)
T KOG0211|consen 158 HMLLPPLELLATVEETGVREKAVESLLKVAVGLPKEKLREHLVPLLKRLATGDWFQSRLSACGLFGKLYVSLPD--DAVK 235 (759)
T ss_pred HHhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHccchhhhhcchhhhhhhHHhccCCCh--HHHH
Confidence 3344444444 23443 5555556655555554433222222222222122333222 222333333332221 1122
Q ss_pred HHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCC
Q 002658 119 TKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASD 198 (896)
Q Consensus 119 pkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~a~d 198 (896)
..+.+.....-+|-+++||.+++.-+|.++..+.+. .....+++-+...+.|....|+++|..++..+.+....
T Consensus 236 ~elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~~------~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~ 309 (759)
T KOG0211|consen 236 RELRPIVQSLCQDDTPMVRRAVASNLGNIAKVLESE------IVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDD 309 (759)
T ss_pred HHHHHHHHhhccccchhhHHHHHhhhHHHHHHHHHH------HHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCC
Confidence 344555556667888999999999999999999542 33555555555555777788999999999999987655
Q ss_pred CCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHH-hccccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhc
Q 002658 199 PPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLS-QVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHS 277 (896)
Q Consensus 199 ~~~~yL~~LlPRL~kLLks~s~kaK~alL~aIgSLA-~vga~~~pyle~lLp~L~e~LsddDW~lRKaA~EaLgsLA~av 277 (896)
.. +..+.+++.++++.+.++-.++.+.......+. .+|. ..+-....++....+.+..|..|.+++.-...++...
T Consensus 310 ~~-d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~--~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l 386 (759)
T KOG0211|consen 310 DD-DVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGP--SATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYL 386 (759)
T ss_pred ch-hhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhcc--ccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhc
Confidence 44 677789999999999998888876655544443 3442 2233355677778899999999988887777777666
Q ss_pred c-hHHHh-hHHHHHHHHHhhhcCCChhhHHH
Q 002658 278 S-NLVID-GATSTLTVLEACRFDKIKPVRDS 306 (896)
Q Consensus 278 G-e~L~P-y~~~~I~~LE~~RfDKvKpVRDa 306 (896)
. +.+.. ....++.+++.+-.|....||.+
T Consensus 387 ~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a 417 (759)
T KOG0211|consen 387 NASCYPNIPDSSILPEVQVLVLDNALHVRSA 417 (759)
T ss_pred CcccccccchhhhhHHHHHHHhcccchHHHH
Confidence 6 22111 23555678888888999999975
No 74
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.33 E-value=0.015 Score=71.19 Aligned_cols=176 Identities=18% Similarity=0.213 Sum_probs=131.9
Q ss_pred CCCCCHHHHHHHHhhhcCC----CC-hhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHh-hcCCChHHHHHHHHHHH
Q 002658 72 LSQESLPMLLNCLYESSND----PK-PAVKKESVRLLALVCELHSELTSTHVTKIISHIVKR-LKDSDSGMKEACRDSIG 145 (896)
Q Consensus 72 L~pd~Lp~fLs~L~es~ss----~k-~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~Ilrr-LkDpDs~VR~Ac~~aLG 145 (896)
|+...+..|..-|.+...+ +. |..=++|+..+-.+++-.++.-.+.+++.+.++..- +.-+.+..-..|.++||
T Consensus 455 lgd~ll~~L~~~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~~~~t~~~~i~rl~~~~asik~S~~n~ql~~Tss~~ig 534 (982)
T KOG2022|consen 455 LGDGLLDFLIDTLEQALAAGDEDPDSLNRTEACIFQFQSVAEYLGETESTWIPRLFETSASIKLSAPNPQLLSTSSDLIG 534 (982)
T ss_pred HhHHHHHHHHHHHHHhhhccCCCchHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHhccccccccCChhHHHHHHHHHH
Confidence 4443466666666555433 33 556667999999999988888899999988876654 55568889999999999
Q ss_pred HHHHHHhcccccCCchhHhhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchh--hH
Q 002658 146 SLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFM--AK 223 (896)
Q Consensus 146 ~LA~~li~~~~e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~a~d~~~~yL~~LlPRL~kLLks~s~k--aK 223 (896)
.++.|+.+++ .+++..++.||.+|+.....+| |...|.++||.++....+|.+.++.-.-.++...+++ .+
T Consensus 535 s~s~~l~e~P-----~~ln~sl~~L~~~Lh~sk~s~q--~i~tl~tlC~~C~~~L~py~d~~~a~~~e~l~~~~~~~S~~ 607 (982)
T KOG2022|consen 535 SLSNWLGEHP-----MYLNPSLPLLFQGLHNSKESEQ--AISTLKTLCETCPESLDPYADQFSAVCYEVLNKSNAKDSDR 607 (982)
T ss_pred HHHHHHhcCC-----cccCchHHHHHHHhcCchHHHH--HHHHHHHHHHhhhhhCchHHHHHHHHHHHHhcccccCchHH
Confidence 9999995543 5688899999999973333444 5566999999999988999999888888888765443 46
Q ss_pred HHHHHHHHHHHhc-c-ccCcccHHHHHHHHHHh
Q 002658 224 ASLLPVVGSLSQV-G-AIAPQSLEPLLQSIHEC 254 (896)
Q Consensus 224 ~alL~aIgSLA~v-g-a~~~pyle~lLp~L~e~ 254 (896)
..++.+||-+.+. . +..+.|+..++.+++.-
T Consensus 608 ~klm~sIGyvls~~~pEe~~kyl~~lin~il~q 640 (982)
T KOG2022|consen 608 LKLMKSIGYVLSRLKPEEIPKYLMKLINPILSQ 640 (982)
T ss_pred HHHHHHHHHHHHhccHHhHHHHHHHHHHHHHHH
Confidence 6889999998642 2 44567888888766654
No 75
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=97.26 E-value=0.11 Score=56.79 Aligned_cols=229 Identities=12% Similarity=0.091 Sum_probs=155.2
Q ss_pred CChhHHHHHHHHHHHHHhcCCCC-----CHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHH
Q 002658 53 ADRDTHQIAIEDLEKTIQTLSQE-----SLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVK 127 (896)
Q Consensus 53 sDRDT~k~Aa~eLD~La~~L~pd-----~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~Ilr 127 (896)
.|..+|.-|+.-|-.+...++++ ++..++.++.+.+.+ +..=..++..+-.++. +.........+|+..|.+
T Consensus 11 ed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D--~~~~~~~l~gl~~L~~-~~~~~~~~~~~i~~~l~~ 87 (262)
T PF14500_consen 11 EDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDD--HACVQPALKGLLALVK-MKNFSPESAVKILRSLFQ 87 (262)
T ss_pred CCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhcc--HhhHHHHHHHHHHHHh-CcCCChhhHHHHHHHHHH
Confidence 57778889999999999888743 477888888888743 3333444777777773 344445556777777776
Q ss_pred hhcCC--ChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHH-hcCCHhHHHHHHHHHHHHHHhcCCCCchhH
Q 002658 128 RLKDS--DSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAM-MEQNKGVQSGAAMCMAKMVECASDPPVVAF 204 (896)
Q Consensus 128 rLkDp--Ds~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL-~Eqnk~VQ~gAasALAkIIE~a~d~~~~yL 204 (896)
...-+ -..+|..+-..+-.|........ ...-..|+..+++.+ +|.+|+--.-++.-+..++..-+ +.++.
T Consensus 88 ~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l----~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~--~~~~~ 161 (262)
T PF14500_consen 88 NVDVQSLPQSTRYAVYQLLDSLLENHREAL----QSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFD--ISEFA 161 (262)
T ss_pred hCChhhhhHHHHHHHHHHHHHHHHHhHHHH----HhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc--cchhH
Confidence 54433 25778888888888877763211 233467888899988 78999988888888888877543 13333
Q ss_pred HHHHHHHHHHh----cCC---chh-hHHHHHHHHHHHHhccccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHh
Q 002658 205 QKLCARICKLL----SNQ---NFM-AKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALH 276 (896)
Q Consensus 205 ~~LlPRL~kLL----ks~---s~k-aK~alL~aIgSLA~vga~~~pyle~lLp~L~e~LsddDW~lRKaA~EaLgsLA~a 276 (896)
+.|..-+.-.+ +.| .++ .+..+-.++..... ..+-+.+.++|.|++.|.++...++.-++++|..-...
T Consensus 162 e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~---s~~~fa~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~ 238 (262)
T PF14500_consen 162 EDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLS---STPLFAPFAFPLLLEKLDSTSPSVKLDSLQTLKACIEN 238 (262)
T ss_pred HHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhc---CcHhhHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 33322222111 221 122 22333333333221 23445678999999999999999999999999999999
Q ss_pred cc-hHHHhhHHHHHHHHH
Q 002658 277 SS-NLVIDGATSTLTVLE 293 (896)
Q Consensus 277 vG-e~L~Py~~~~I~~LE 293 (896)
.| +.+.||...+-..|.
T Consensus 239 y~~~~~~~~~~~iw~~lk 256 (262)
T PF14500_consen 239 YGADSLSPHWSTIWNALK 256 (262)
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 99 889999999988775
No 76
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.25 E-value=0.0053 Score=69.05 Aligned_cols=258 Identities=13% Similarity=0.056 Sum_probs=164.9
Q ss_pred HHHHcCCChhHHHHHHHHHHHHHhcCCCCC-HH--HHHHHHhhhcCCCChhhHHHHHHHHHHHHHH--hcccchhhHHHH
Q 002658 47 TSLSKLADRDTHQIAIEDLEKTIQTLSQES-LP--MLLNCLYESSNDPKPAVKKESVRLLALVCEL--HSELTSTHVTKI 121 (896)
Q Consensus 47 ~~L~KLsDRDT~k~Aa~eLD~La~~L~pd~-Lp--~fLs~L~es~ss~k~~vRKeAIllLG~IAeg--~~d~I~P~LpkI 121 (896)
+-|+|..|--.++.|+..|-.+.......+ +. .-++.|.+...+.++.+|..|-.++++|+-. +-+.+..-=|++
T Consensus 173 trLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~l 252 (550)
T KOG4224|consen 173 TRLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKL 252 (550)
T ss_pred HhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccch
Confidence 336777777799999999988876432211 11 1133344444466788999999999998754 445577778899
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHHHHHH--hcccccCCchhHhhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHh--cC
Q 002658 122 ISHIVKRLKDSDSGMKEACRDSIGSLSKLY--LNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVEC--AS 197 (896)
Q Consensus 122 L~~IlrrLkDpDs~VR~Ac~~aLG~LA~~l--i~~~~e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~--a~ 197 (896)
+|.++....|+++.|.-.+..+++.|+... +.+.. -..-+|.|++.|.++.-..-.+...|+-.+-=. ..
T Consensus 253 v~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv------~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe 326 (550)
T KOG4224|consen 253 VPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIV------EAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNE 326 (550)
T ss_pred HHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHH------hcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcc
Confidence 999999999999999999999999998754 11111 112356667777555444445556666433211 11
Q ss_pred CCC--chhHHHHHHHHHHHhcCC-chhhHHHHHHHHHHHHhc-cccCccc-HHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 002658 198 DPP--VVAFQKLCARICKLLSNQ-NFMAKASLLPVVGSLSQV-GAIAPQS-LEPLLQSIHECLGSTDWATRKAAADALSA 272 (896)
Q Consensus 198 d~~--~~yL~~LlPRL~kLLks~-s~kaK~alL~aIgSLA~v-ga~~~py-le~lLp~L~e~LsddDW~lRKaA~EaLgs 272 (896)
-++ ..+|.+| ..+|.-. +..+|.++.+.+.-+++. ....... -...+|-|.+.+-|..-.+|..-.-||..
T Consensus 327 ~lI~dagfl~pL----VrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~ 402 (550)
T KOG4224|consen 327 VLIADAGFLRPL----VRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQ 402 (550)
T ss_pred cceecccchhHH----HHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHH
Confidence 121 1345444 4455543 455777888888777642 2111111 12356778888888776676666667777
Q ss_pred HHHhcchHHHhhHHHHHHHHHhhhcCCChhhHHHHHHHHHHH
Q 002658 273 LALHSSNLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQLW 314 (896)
Q Consensus 273 LA~avGe~L~Py~~~~I~~LE~~RfDKvKpVRDaA~eALe~W 314 (896)
+|..--++..-.-..++.+|-...++...+||+-+.+||.-+
T Consensus 403 Lal~d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nl 444 (550)
T KOG4224|consen 403 LALNDNDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINL 444 (550)
T ss_pred HHhccccHHHHhhcCCcceeecccCccchhhcccHHHHHHhh
Confidence 776655433322356788888888999999998877776543
No 77
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=97.22 E-value=0.0096 Score=64.65 Aligned_cols=191 Identities=16% Similarity=0.172 Sum_probs=132.4
Q ss_pred CCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhc--ccchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHH
Q 002658 72 LSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHS--ELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSK 149 (896)
Q Consensus 72 L~pd~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~--d~I~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~ 149 (896)
++++.|..++.+|. .+.+|..++.+..++++.+..-. +.+.. --.++.|...|.+|++.||.-+.+++..++.
T Consensus 9 l~~~~l~~Ll~lL~---~t~dp~i~e~al~al~n~aaf~~nq~~Ir~--~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~ 83 (254)
T PF04826_consen 9 LEAQELQKLLCLLE---STEDPFIQEKALIALGNSAAFPFNQDIIRD--LGGISLIGSLLNDPNPSVREKALNALNNLSV 83 (254)
T ss_pred cCHHHHHHHHHHHh---cCCChHHHHHHHHHHHhhccChhHHHHHHH--cCCHHHHHHHcCCCChHHHHHHHHHHHhcCC
Confidence 56667888777776 24579999999999999765221 22222 2457889999999999999999999998877
Q ss_pred HHhcccccCCchhHhhhHHHHHHHHhc--CCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchhhHHHHH
Q 002658 150 LYLNGKEENNGTVVGLFVKPLFEAMME--QNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLL 227 (896)
Q Consensus 150 ~li~~~~e~~~~~~~~lL~pL~eaL~E--qnk~VQ~gAasALAkIIE~a~d~~~~yL~~LlPRL~kLLks~s~kaK~alL 227 (896)
..- .......+++.+.+.+.. -|-.+|.++..+|..+.= .+.....+..-+|.|+.+|...+.++|..+|
T Consensus 84 ~~e------n~~~Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv--~~~~~~~l~~~i~~ll~LL~~G~~~~k~~vL 155 (254)
T PF04826_consen 84 NDE------NQEQIKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTV--TNDYHHMLANYIPDLLSLLSSGSEKTKVQVL 155 (254)
T ss_pred Chh------hHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCC--CcchhhhHHhhHHHHHHHHHcCChHHHHHHH
Confidence 661 123456677777776633 378999988888888742 2222344666788899999999999999999
Q ss_pred HHHHHHHhcc----ccCcccHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHHHHhcc
Q 002658 228 PVVGSLSQVG----AIAPQSLEPLLQSIHECLGS-TDWATRKAAADALSALALHSS 278 (896)
Q Consensus 228 ~aIgSLA~vg----a~~~pyle~lLp~L~e~Lsd-dDW~lRKaA~EaLgsLA~avG 278 (896)
.++.-++.-. ..+.. ..+..+...+.. .+.++...++..+..|-..+.
T Consensus 156 k~L~nLS~np~~~~~Ll~~---q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~ 208 (254)
T PF04826_consen 156 KVLVNLSENPDMTRELLSA---QVLSSFLSLFNSSESKENLLRVLTFFENINENIK 208 (254)
T ss_pred HHHHHhccCHHHHHHHHhc---cchhHHHHHHccCCccHHHHHHHHHHHHHHHhhC
Confidence 9988886311 11111 223444454544 356777777778888866666
No 78
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=97.18 E-value=0.0026 Score=77.81 Aligned_cols=213 Identities=13% Similarity=0.158 Sum_probs=154.7
Q ss_pred CChhHHHHHHHHHHHHHhcC----CCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhccc------c-------h
Q 002658 53 ADRDTHQIAIEDLEKTIQTL----SQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSEL------T-------S 115 (896)
Q Consensus 53 sDRDT~k~Aa~eLD~La~~L----~pd~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~------I-------~ 115 (896)
+..|-+.+|.+-|-=+...| .|+..+.. ..+.+.+++ +.+-..+..+|..+..-+... . .
T Consensus 786 gs~dls~~al~~l~Wv~KaLl~R~~~~s~~ia-~klld~Ls~--~~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQ 862 (1030)
T KOG1967|consen 786 GSLDLSEIALTVLAWVTKALLLRNHPESSEIA-EKLLDLLSG--PSTGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQ 862 (1030)
T ss_pred CCcchhhHHHHHHHHHHHHHHHcCCcccchHH-HHHHHhcCC--ccccchHHHhhHhhhccChHHhhhccccchhHHHHH
Confidence 44445666666554444332 34443332 223333333 334456666776665443321 1 1
Q ss_pred hhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHh
Q 002658 116 THVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVEC 195 (896)
Q Consensus 116 P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~ 195 (896)
-+...|+|.++..+.-.+..++.--..++.....++..+ .....++.++|.|+++|+=++..||..+..||..++..
T Consensus 863 RfF~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~---vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~ 939 (1030)
T KOG1967|consen 863 RFFCDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQ---VLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTE 939 (1030)
T ss_pred HHHHhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHH---hhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHh
Confidence 256778999999998666677777777766666665332 23356889999999999999999999999999999998
Q ss_pred cCCCCchhHHHHHHHHHHHhcCCch---hhHHHHHHHHHHHHhc-c-ccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 002658 196 ASDPPVVAFQKLCARICKLLSNQNF---MAKASLLPVVGSLSQV-G-AIAPQSLEPLLQSIHECLGSTDWATRKAAADAL 270 (896)
Q Consensus 196 a~d~~~~yL~~LlPRL~kLLks~s~---kaK~alL~aIgSLA~v-g-a~~~pyle~lLp~L~e~LsddDW~lRKaA~EaL 270 (896)
.+....+|++.++|.++.+=.++++ -+|..+|.|++++... - ....+|-+.++..|..+|.|...-+|+.|+++=
T Consensus 940 ~~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR 1019 (1030)
T KOG1967|consen 940 SETLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTR 1019 (1030)
T ss_pred ccccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHh
Confidence 8888889999999999999887764 4889999999999763 3 457899999999999999999999999999984
Q ss_pred H
Q 002658 271 S 271 (896)
Q Consensus 271 g 271 (896)
.
T Consensus 1020 ~ 1020 (1030)
T KOG1967|consen 1020 Q 1020 (1030)
T ss_pred h
Confidence 4
No 79
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=97.18 E-value=0.11 Score=59.82 Aligned_cols=249 Identities=14% Similarity=0.166 Sum_probs=163.0
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcC----------CCC---hhhHHHHHHHHHHHHHHhcccchhhHHHH
Q 002658 55 RDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSN----------DPK---PAVKKESVRLLALVCELHSELTSTHVTKI 121 (896)
Q Consensus 55 RDT~k~Aa~eLD~La~~L~pd~Lp~fLs~L~es~s----------s~k---~~vRKeAIllLG~IAeg~~d~I~P~LpkI 121 (896)
...-..+..-+..++..++++.=..++..+....- ... +..++..++..+.++....+-..|.+..+
T Consensus 111 ~~~L~~~~~l~~~iv~~l~~~~q~~~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~l 190 (415)
T PF12460_consen 111 DRVLELLSRLINLIVRSLSPEKQQEILDELYSLFLSPKSFSPFQPSSSTISEQQSRLVILFSAILCSLRKDVSLPDLEEL 190 (415)
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccccccCCCCccccccccccccHHHHHHHHHHcCCcccCccCHHHH
Confidence 34555666677777777776543333333332111 111 23445555666667776667777788888
Q ss_pred HHHHHHhhcC-CChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHH-hcCCHhHHHHHHHHHHHHHHhc--C
Q 002658 122 ISHIVKRLKD-SDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAM-MEQNKGVQSGAAMCMAKMVECA--S 197 (896)
Q Consensus 122 L~~IlrrLkD-pDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL-~Eqnk~VQ~gAasALAkIIE~a--~ 197 (896)
+..++..... .++.+|.+++..++.|+-.+.+. +.+..++..++..+ ....+.....+...+.-+.-+. +
T Consensus 191 l~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~------~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R 264 (415)
T PF12460_consen 191 LQSLLNLALSSEDEFSRLAALQLLASLVNKWPDD------DDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMR 264 (415)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCh------hhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHc
Confidence 8888887554 45899999999999999887321 35677777777777 3344444445555555555542 2
Q ss_pred CCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhc--------c-cc-----CcccHHHHHHHHHHhhCCCCHHHH
Q 002658 198 DPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQV--------G-AI-----APQSLEPLLQSIHECLGSTDWATR 263 (896)
Q Consensus 198 d~~~~yL~~LlPRL~kLLks~s~kaK~alL~aIgSLA~v--------g-a~-----~~pyle~lLp~L~e~LsddDW~lR 263 (896)
.. +.-..++.+|+.+|.++.. ...+-.+++-+..- . +. -.-+|..++|.|.+.....+-..|
T Consensus 265 ~~--~~~~~~~~~L~~lL~~~~~--g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k 340 (415)
T PF12460_consen 265 GH--PLATELLDKLLELLSSPEL--GQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIK 340 (415)
T ss_pred CC--chHHHHHHHHHHHhCChhh--HHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhH
Confidence 21 3456788889999998543 33344444444311 0 11 146788899999999888666688
Q ss_pred HHHHHHHHHHHHhcc-hHHHhhHHHHHHHHHhhhcCCChhhHHHHHHHHHH
Q 002658 264 KAAADALSALALHSS-NLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQL 313 (896)
Q Consensus 264 KaA~EaLgsLA~avG-e~L~Py~~~~I~~LE~~RfDKvKpVRDaA~eALe~ 313 (896)
-.-.-+|..|...+| +.+.++++.++..+-.+---.+..||.++++.|..
T Consensus 341 ~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~ 391 (415)
T PF12460_consen 341 SNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKM 391 (415)
T ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 888999999999999 89999999999977655544555588885555544
No 80
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.09 E-value=0.023 Score=72.71 Aligned_cols=151 Identities=17% Similarity=0.298 Sum_probs=116.1
Q ss_pred CChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhhcCC
Q 002658 53 ADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDS 132 (896)
Q Consensus 53 sDRDT~k~Aa~eLD~La~~L~pd~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrLkDp 132 (896)
.|+++.+.++..|-..-. |. ..|.+||..|.-...++...+|--|+++|..+++.-+.-+. .+.|...|..++.|.
T Consensus 792 ~d~~~a~li~~~la~~r~-f~-~sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~--~~dvq~~Vh~R~~Ds 867 (1692)
T KOG1020|consen 792 ADDDDAKLIVFYLAHARS-FS-QSFDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLS--RPDVQEAVHGRLNDS 867 (1692)
T ss_pred ccchhHHHHHHHHHhhhH-HH-HhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhc--CHHHHHHHHHhhccc
Confidence 355666666655543322 21 14899999999888889999999999999999996544332 477888999999999
Q ss_pred ChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 002658 133 DSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARIC 212 (896)
Q Consensus 133 Ds~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~a~d~~~~yL~~LlPRL~ 212 (896)
...||+|+++.+|+++-.. .+...+|...+.+.+.+..-.|-..+.-=|..+|+.-++. +.+..+|-|++
T Consensus 868 sasVREAaldLvGrfvl~~--------~e~~~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf--~~i~~~cakml 937 (1692)
T KOG1020|consen 868 SASVREAALDLVGRFVLSI--------PELIFQYYDQIIERILDTGVSVRKRVIKILRDICEETPDF--SKIVDMCAKML 937 (1692)
T ss_pred hhHHHHHHHHHHhhhhhcc--------HHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCCh--hhHHHHHHHHH
Confidence 9999999999999988776 2557788888889999999999999999999999976553 34455555555
Q ss_pred HHhcC
Q 002658 213 KLLSN 217 (896)
Q Consensus 213 kLLks 217 (896)
.-.++
T Consensus 938 rRv~D 942 (1692)
T KOG1020|consen 938 RRVND 942 (1692)
T ss_pred HHhcc
Confidence 55444
No 81
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.00 E-value=0.17 Score=61.94 Aligned_cols=229 Identities=17% Similarity=0.173 Sum_probs=146.2
Q ss_pred HHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccchhh
Q 002658 38 MVEMKQKILTSLSKLADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTH 117 (896)
Q Consensus 38 ~~~Lk~rll~~L~KLsDRDT~k~Aa~eLD~La~~L~pd~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I~P~ 117 (896)
.+.+-.-|-.|.+..++. .|+.|+.+|-++-. |++++-..++.+|..-+.+..|.|=-.|+++|..+|--+-+.|-+|
T Consensus 141 aPI~llAIk~~~~D~s~y-VRk~AA~AIpKLYs-Ld~e~k~qL~e~I~~LLaD~splVvgsAv~AF~evCPerldLIHkn 218 (968)
T KOG1060|consen 141 APIMLLAIKKAVTDPSPY-VRKTAAHAIPKLYS-LDPEQKDQLEEVIKKLLADRSPLVVGSAVMAFEEVCPERLDLIHKN 218 (968)
T ss_pred HHHHHHHHHHHhcCCcHH-HHHHHHHhhHHHhc-CChhhHHHHHHHHHHHhcCCCCcchhHHHHHHHHhchhHHHHhhHH
Confidence 344444455555555544 88999988887764 6788888888888877888889999999999998887777778777
Q ss_pred HHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhccc-c-----c-------------------CCchhHhhhHHHHHH
Q 002658 118 VTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGK-E-----E-------------------NNGTVVGLFVKPLFE 172 (896)
Q Consensus 118 LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~-~-----e-------------------~~~~~~~~lL~pL~e 172 (896)
..++. +.|.|-|.==+-....+|.++|++.+-.+ . + .+..-+..||..+=-
T Consensus 219 yrklC----~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkp 294 (968)
T KOG1060|consen 219 YRKLC----RLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKP 294 (968)
T ss_pred HHHHH----hhccchhhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccH
Confidence 76654 45555554334456677888887765321 0 0 011223444444333
Q ss_pred HHhcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcc-ccCcccHHH-----
Q 002658 173 AMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVG-AIAPQSLEP----- 246 (896)
Q Consensus 173 aL~Eqnk~VQ~gAasALAkIIE~a~d~~~~yL~~LlPRL~kLLks~s~kaK~alL~aIgSLA~vg-a~~~pyle~----- 246 (896)
.|...|+.|-.++|.++.-+- +. .-..+++.-|+.+|.++ ..+|..+|.+|..++... ..|.||++.
T Consensus 295 Ll~S~n~sVVmA~aql~y~lA---P~---~~~~~i~kaLvrLLrs~-~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~s 367 (968)
T KOG1060|consen 295 LLQSRNPSVVMAVAQLFYHLA---PK---NQVTKIAKALVRLLRSN-REVQYVVLQNIATISIKRPTLFEPHLKSFFVRS 367 (968)
T ss_pred HHhcCCcHHHHHHHhHHHhhC---CH---HHHHHHHHHHHHHHhcC-CcchhhhHHHHHHHHhcchhhhhhhhhceEeec
Confidence 445668888777777655432 11 12334555566666653 335667777887775433 556666654
Q ss_pred -------------------------HHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcch
Q 002658 247 -------------------------LLQSIHECLGSTDWATRKAAADALSALALHSSN 279 (896)
Q Consensus 247 -------------------------lLp~L~e~LsddDW~lRKaA~EaLgsLA~avGe 279 (896)
+++-++.+..+.|.++=.+|+++||.-|..++.
T Consensus 368 sDp~~vk~lKleiLs~La~esni~~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~s 425 (968)
T KOG1060|consen 368 SDPTQVKILKLEILSNLANESNISEILRELQTYIKSSDRSFAAAAVKAIGRCASRIGS 425 (968)
T ss_pred CCHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhCc
Confidence 233344455666777888888999988888875
No 82
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.00 E-value=0.02 Score=69.54 Aligned_cols=105 Identities=15% Similarity=0.174 Sum_probs=65.7
Q ss_pred HHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccc
Q 002658 77 LPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKE 156 (896)
Q Consensus 77 Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~ 156 (896)
+-.+.++|..-+++.+-.+--.|+.+|| ..|..-+ .+-+.|-|.+.|+.+++.||.=|.-+..++.+...
T Consensus 105 llLltNslknDL~s~nq~vVglAL~alg---~i~s~Em---ardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P---- 174 (866)
T KOG1062|consen 105 LLLLTNSLKNDLNSSNQYVVGLALCALG---NICSPEM---ARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVP---- 174 (866)
T ss_pred HHHHHHHHHhhccCCCeeehHHHHHHhh---ccCCHHH---hHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCc----
Confidence 3334455555555555554444444444 4444333 34557888888999999999888888777766651
Q ss_pred cCCchhHhhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHh
Q 002658 157 ENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVEC 195 (896)
Q Consensus 157 e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~ 195 (896)
+....|+++--..|.+.+..|-.++.--+..+|+.
T Consensus 175 ----~l~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~ 209 (866)
T KOG1062|consen 175 ----DLVEHFVIAFRKLLCEKHHGVLIAGLHLITELCKI 209 (866)
T ss_pred ----hHHHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhc
Confidence 34666777777777777777766554444555544
No 83
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=96.96 E-value=0.0014 Score=53.91 Aligned_cols=53 Identities=30% Similarity=0.137 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHhcchHHHhhHHHHHHHHHhhhcCCChhhHHHHHHHHH
Q 002658 260 WATRKAAADALSALALHSSNLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQ 312 (896)
Q Consensus 260 W~lRKaA~EaLgsLA~avGe~L~Py~~~~I~~LE~~RfDKvKpVRDaA~eALe 312 (896)
|.+|.+|+.+|+.++...++.+.||...++..|..+..|....||..|..||.
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg 53 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALG 53 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 89999999999999999999999999999999999999999999999887774
No 84
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=96.94 E-value=0.03 Score=69.49 Aligned_cols=192 Identities=12% Similarity=0.036 Sum_probs=153.2
Q ss_pred hHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHH-hcCCHhHHHHHHHHHHHHHHh
Q 002658 117 HVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAM-MEQNKGVQSGAAMCMAKMVEC 195 (896)
Q Consensus 117 ~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL-~Eqnk~VQ~gAasALAkIIE~ 195 (896)
-+++|-+.+...+.|++-.=|..+.+.+......-... .......++..++... .+.|..|-.-|+.||..+.-.
T Consensus 250 i~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~----~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~ 325 (815)
T KOG1820|consen 250 ILSKITKNLETEMLSKKWKDRKEALEELVAILEEAKKE----IVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKK 325 (815)
T ss_pred hhhhcChHHHHhhhccchHHHHHHHHHHHHHHhccccc----cccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHh
Confidence 48889999999999999999998888877666655211 1223444555666655 577888888899999999999
Q ss_pred cCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhccccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 002658 196 ASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALAL 275 (896)
Q Consensus 196 a~d~~~~yL~~LlPRL~kLLks~s~kaK~alL~aIgSLA~vga~~~pyle~lLp~L~e~LsddDW~lRKaA~EaLgsLA~ 275 (896)
++....+|...+.|.|+.-|+.....++.+++.|+-++.. ...+..+++.+.+++.+.+.+.|......|.....
T Consensus 326 lr~~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~n-----s~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~ 400 (815)
T KOG1820|consen 326 LRPLFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILN-----STPLSKMSEAILEALKGKNPQIKGECLLLLDRKLR 400 (815)
T ss_pred cchhhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHh-----cccHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHh
Confidence 9888889999999999999999888888888888888754 34577888999999999999999998888888777
Q ss_pred hcch--HHHhhHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHh
Q 002658 276 HSSN--LVIDGATSTLTVLEACRFDKIKPVRDSMNEALQLWKKI 317 (896)
Q Consensus 276 avGe--~L~Py~~~~I~~LE~~RfDKvKpVRDaA~eALe~WK~l 317 (896)
-.+. ....-...++..+-..-.|+.++||.++.+++-....+
T Consensus 401 ~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~ 444 (815)
T KOG1820|consen 401 KLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKV 444 (815)
T ss_pred hcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHH
Confidence 7773 23333677777888888899999999999988766553
No 85
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=96.93 E-value=0.089 Score=65.91 Aligned_cols=264 Identities=17% Similarity=0.219 Sum_probs=157.8
Q ss_pred HHHHHHHHHHH--HcC--CChhHHHHHHHHHHHHHhcCC----CCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHh
Q 002658 39 VEMKQKILTSL--SKL--ADRDTHQIAIEDLEKTIQTLS----QESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELH 110 (896)
Q Consensus 39 ~~Lk~rll~~L--~KL--sDRDT~k~Aa~eLD~La~~L~----pd~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~ 110 (896)
..++..++.-| +|+ =|..++..|+..|.++...-+ ..-|+++|+++. +.+..-|.-+.++.|-+.-.+
T Consensus 538 ~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~pk~~a~~~L~~lld~~l----s~~~~~r~g~~la~~ev~~~~ 613 (1133)
T KOG1943|consen 538 SGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLTEPKYLADYVLPPLLDSTL----SKDASMRHGVFLAAGEVIGAL 613 (1133)
T ss_pred hhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhHHhhcccchhhhhhhhc----CCChHHhhhhHHHHHHHHHHh
Confidence 44566666644 456 488899999999999776432 122556555554 455666777666666665433
Q ss_pred ccc--chhh--------HHHHHH--------------------------------------------HHHHhhcCCChHH
Q 002658 111 SEL--TSTH--------VTKIIS--------------------------------------------HIVKRLKDSDSGM 136 (896)
Q Consensus 111 ~d~--I~P~--------LpkIL~--------------------------------------------~IlrrLkDpDs~V 136 (896)
... +.++ ++.|++ .|.+.+.+|+ .+
T Consensus 614 ~~l~~~~~~l~e~~i~~l~~ii~~~~~~~~~rg~~~lmr~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~n-~i 692 (1133)
T KOG1943|consen 614 RKLEPVIKGLDENRIAGLLSIIPPICDRYFYRGQGTLMRQATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTLPN-QI 692 (1133)
T ss_pred hhhhhhhhhhHHHHhhhhhhhccHHHHHHhccchHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcchH-HH
Confidence 211 1110 000010 1112223344 67
Q ss_pred HHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhcC-CHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHh
Q 002658 137 KEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQ-NKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLL 215 (896)
Q Consensus 137 R~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~Eq-nk~VQ~gAasALAkIIE~a~d~~~~yL~~LlPRL~kLL 215 (896)
|+++.++++.++.-+.... +... ..++...+..+.+. +..+-.|..+++..+.-.+ ...++-+.||-.++..+
T Consensus 693 ~~~av~av~~l~s~y~~~d--~~~~--~~li~~~ls~~~~~~~~~~r~g~~lal~~lp~~~--i~~~~q~~lc~~~l~~~ 766 (1133)
T KOG1943|consen 693 RDAAVSAVSDLVSTYVKAD--EGEE--APLITRYLSRLTKCSEERIRRGLILALGVLPSEL--IHRHLQEKLCKLVLELL 766 (1133)
T ss_pred HHHHHHHHHHHHHHHHhcC--chhh--hHHHHHHHHHhcCchHHHHHHHHHHHHccCcHHh--hchHHHHHHHHHHhccC
Confidence 8888999999888775521 1111 13444555555444 5556666666655544321 11245667777777777
Q ss_pred cCC-chhhHHHHHHHHHHHHh-cc-ccC----cccHHHHHHHHHHhhCCC--C--HHHHHHHHHHHHHHHHhcc--hHHH
Q 002658 216 SNQ-NFMAKASLLPVVGSLSQ-VG-AIA----PQSLEPLLQSIHECLGST--D--WATRKAAADALSALALHSS--NLVI 282 (896)
Q Consensus 216 ks~-s~kaK~alL~aIgSLA~-vg-a~~----~pyle~lLp~L~e~Lsdd--D--W~lRKaA~EaLgsLA~avG--e~L~ 282 (896)
-.. ...+|...+.++..+.. ++ ..+ ..+++.++.+|-++..|. | -=+|++|+-+|..+..... ++|.
T Consensus 767 p~d~~a~aR~~~V~al~~v~~~~~~~~~~~~~~k~~e~LL~~lddYttd~rGDVGswVReaAm~al~~~~~~l~~p~~ld 846 (1133)
T KOG1943|consen 767 PSDAWAEARQQNVKALAHVCKTVTSLLFSESIEKFRETLLNALDDYTTDSRGDVGSWVREAAMKALSSLLDTLSSPKLLD 846 (1133)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcccccCccHHHHHHHHHHHHHHhhhhhhcCccccc
Confidence 666 66677777777776643 33 334 444555555555555543 2 3389999999999887765 6777
Q ss_pred hh-HHHHHHHHHhhhcCCChhhHHHHHHHHHH
Q 002658 283 DG-ATSTLTVLEACRFDKIKPVRDSMNEALQL 313 (896)
Q Consensus 283 Py-~~~~I~~LE~~RfDKvKpVRDaA~eALe~ 313 (896)
++ +.+|+.+|-..-.||++-.|+.+..++..
T Consensus 847 ~~~i~~~~~~~vqQ~veKIdrlre~a~~~~~q 878 (1133)
T KOG1943|consen 847 EDSINRIIRYFVQQAVEKIDRLRELAASALNQ 878 (1133)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhc
Confidence 77 57778889999999999999985555443
No 86
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=96.92 E-value=0.04 Score=64.20 Aligned_cols=203 Identities=14% Similarity=0.155 Sum_probs=118.7
Q ss_pred CCChhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhhcCC-ChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHH
Q 002658 90 DPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDS-DSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVK 168 (896)
Q Consensus 90 s~k~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrLkDp-Ds~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~ 168 (896)
.++..+=|..++.+.++-+.........+++++..+....++| +|..-+-+-++||.+.+...+...+.....-..++|
T Consensus 41 ~ENeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~~~~~v~~~E~~L~P 120 (435)
T PF03378_consen 41 AENEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEADPEAVSQFEEALFP 120 (435)
T ss_dssp TC-HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GGGHH---HHHHHHHH
T ss_pred ccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCCChhHHHHHHHHHHH
Confidence 3444444445555444444433333344555555555555665 589999999999999999754221112234445555
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHHHHhcC-CCCchhHHHHHHHHH-HHhcCCchhhHHHHHHHHHHHHhcc-ccC--ccc
Q 002658 169 PLFEAMMEQNKGVQSGAAMCMAKMVECAS-DPPVVAFQKLCARIC-KLLSNQNFMAKASLLPVVGSLSQVG-AIA--PQS 243 (896)
Q Consensus 169 pL~eaL~Eqnk~VQ~gAasALAkIIE~a~-d~~~~yL~~LlPRL~-kLLks~s~kaK~alL~aIgSLA~vg-a~~--~py 243 (896)
++...|.+.-....--++.=|+-++|..+ ..+.+....|+|.|+ ..+=...--+ +++..++.+++..+ ..+ ..+
T Consensus 121 ~f~~ILq~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~~gni-PalvrLL~a~i~k~~~~i~~~~~ 199 (435)
T PF03378_consen 121 PFQEILQQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWERRGNI-PALVRLLQAYIKKDPSFIVANNQ 199 (435)
T ss_dssp HHHHHHHTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGSTTTH-HHHHHHHHHHHHHHGGG----S-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhccCCCc-CcHHHHHHHHHHhCchhhcchhh
Confidence 65555555545566667888899999876 333333334444443 2221111111 47777888887544 322 578
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcc-hHHHhhHHHHHHHHHhh
Q 002658 244 LEPLLQSIHECLGSTDWATRKAAADALSALALHSS-NLVIDGATSTLTVLEAC 295 (896)
Q Consensus 244 le~lLp~L~e~LsddDW~lRKaA~EaLgsLA~avG-e~L~Py~~~~I~~LE~~ 295 (896)
++.++...+.++.+..-+ -.+.+.|.+|...++ +.+.||+..++.+|-..
T Consensus 200 l~~iLgvFQkLi~sk~~D--~~gF~LL~~iv~~~p~~~l~~yl~~I~~lll~R 250 (435)
T PF03378_consen 200 LEPILGVFQKLIASKAND--HYGFDLLESIVENLPPEALEPYLKQIFTLLLTR 250 (435)
T ss_dssp CHHHHHHHHHHHT-TTCH--HHHHHHHHHHHHHS-HHHHGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCcc--hHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Confidence 889998888888874322 357899999999999 89999999999876533
No 87
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.91 E-value=0.018 Score=68.81 Aligned_cols=219 Identities=17% Similarity=0.186 Sum_probs=138.0
Q ss_pred HHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcc--cccC
Q 002658 81 LNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNG--KEEN 158 (896)
Q Consensus 81 Ls~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~--~~e~ 158 (896)
..+|.....+.++.||.+|+..|=++.+|..=. .-+....++.|+|.+..||.+|...+..++..+.-+ ....
T Consensus 200 ~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~kL~-----~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~ 274 (823)
T KOG2259|consen 200 ARGLIYLEHDQDFRVRTHAVEGLLALSEGFKLS-----KACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESE 274 (823)
T ss_pred HHHHHHHhcCCCcchHHHHHHHHHhhccccccc-----HHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhh
Confidence 333555556778889999888887777744211 113456788899999999999999988888877322 1112
Q ss_pred CchhHhhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCchhHHH-HHHHH--------------------------
Q 002658 159 NGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQK-LCARI-------------------------- 211 (896)
Q Consensus 159 ~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~a~d~~~~yL~~-LlPRL-------------------------- 211 (896)
........+..+.+++.+-.-.|-.-|+-+|..+.....+.+...|++ ||-++
T Consensus 275 e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~ 354 (823)
T KOG2259|consen 275 EEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWN 354 (823)
T ss_pred hhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCcccc
Confidence 234566777788888866554444445666655554443333333432 44411
Q ss_pred ------------------------HHHhcCCchhhHHHHHHHHHHHHhccccCcccHHHHHHHHHHhhCCCCHHHHHHHH
Q 002658 212 ------------------------CKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAA 267 (896)
Q Consensus 212 ------------------------~kLLks~s~kaK~alL~aIgSLA~vga~~~pyle~lLp~L~e~LsddDW~lRKaA~ 267 (896)
+--|.+.-+.+|.+++..+++++. ..+.+....+-.|.+.+.|+.-.+|.-|+
T Consensus 355 advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~---ssP~FA~~aldfLvDMfNDE~~~VRL~ai 431 (823)
T KOG2259|consen 355 ADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLAT---SSPGFAVRALDFLVDMFNDEIEVVRLKAI 431 (823)
T ss_pred ccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHc---CCCCcHHHHHHHHHHHhccHHHHHHHHHH
Confidence 111111123456677777777764 34556667788888999999999999999
Q ss_pred HHHHHHHHhcchHHHhhHHHHHHHHHhhhcCCChhhHHHHHHHHH
Q 002658 268 DALSALALHSSNLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQ 312 (896)
Q Consensus 268 EaLgsLA~avGe~L~Py~~~~I~~LE~~RfDKvKpVRDaA~eALe 312 (896)
-+|..|+..+- .=..++..+++.|+ |....||+.+.+.|.
T Consensus 432 ~aL~~Is~~l~-i~eeql~~il~~L~----D~s~dvRe~l~elL~ 471 (823)
T KOG2259|consen 432 FALTMISVHLA-IREEQLRQILESLE----DRSVDVREALRELLK 471 (823)
T ss_pred HHHHHHHHHhe-ecHHHHHHHHHHHH----hcCHHHHHHHHHHHH
Confidence 99999888743 11133444444444 777778887655554
No 88
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=96.87 E-value=0.011 Score=61.33 Aligned_cols=117 Identities=18% Similarity=0.163 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHhcCCchhhHHHHHHHHHHHHh--ccccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH---HHhcc
Q 002658 204 FQKLCARICKLLSNQNFMAKASLLPVVGSLSQ--VGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSAL---ALHSS 278 (896)
Q Consensus 204 L~~LlPRL~kLLks~s~kaK~alL~aIgSLA~--vga~~~pyle~lLp~L~e~LsddDW~lRKaA~EaLgsL---A~avG 278 (896)
++.++|-|+.-|......-+-.+...+.-+.. .+....|.+..+++.|...|...|.++..+++++|..| ...+|
T Consensus 36 y~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG 115 (183)
T PF10274_consen 36 YHHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVG 115 (183)
T ss_pred hhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhh
Confidence 45677888877765433333333333333332 23567899999999999999999999999999999999 88899
Q ss_pred hHHHhhHHHHHHHHH---hhh--------cCCChhhHHHHHHHHHHHHHhccC
Q 002658 279 NLVIDGATSTLTVLE---ACR--------FDKIKPVRDSMNEALQLWKKIAGK 320 (896)
Q Consensus 279 e~L~Py~~~~I~~LE---~~R--------fDKvKpVRDaA~eALe~WK~la~~ 320 (896)
+.|.||..+++..+. +++ +.+.+.++|.+.++|+..-.-+|.
T Consensus 116 ~aLvPyyrqLLp~ln~f~~k~~n~gd~i~y~~~~~~~dlI~etL~~lE~~GG~ 168 (183)
T PF10274_consen 116 EALVPYYRQLLPVLNLFKNKNVNLGDGIDYRKRKNLGDLIQETLELLERNGGP 168 (183)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHhcCh
Confidence 999999998887776 333 245577899999999998887765
No 89
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=96.85 E-value=0.0013 Score=48.74 Aligned_cols=31 Identities=13% Similarity=0.453 Sum_probs=27.9
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHHHHHH
Q 002658 121 IISHIVKRLKDSDSGMKEACRDSIGSLSKLY 151 (896)
Q Consensus 121 IL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~l 151 (896)
|+|.+++.|+|+++.||.+|+.++|.|++++
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~~ 31 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEHC 31 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHTS
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhhC
Confidence 6899999999999999999999999998763
No 90
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.80 E-value=0.14 Score=62.68 Aligned_cols=228 Identities=15% Similarity=0.134 Sum_probs=127.6
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhhcCCChHH
Q 002658 57 THQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGM 136 (896)
Q Consensus 57 T~k~Aa~eLD~La~~L~pd~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrLkDpDs~V 136 (896)
..-.|+-.|=.|. ++|..+-+++-+.+-+++.++.+||-|+++.--+.+.-++.+ +.+++...+.|.|.+..|
T Consensus 123 vVglAL~alg~i~---s~EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~----e~f~~~~~~lL~ek~hGV 195 (866)
T KOG1062|consen 123 VVGLALCALGNIC---SPEMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLV----EHFVIAFRKLLCEKHHGV 195 (866)
T ss_pred ehHHHHHHhhccC---CHHHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHH----HHhhHHHHHHHhhcCCce
Confidence 3344544444443 687888899999988899999999999999877777665554 344566777888888776
Q ss_pred HHHHHHHHHHHHHHH---------------------hcc----ccc--C-CchhHhhhHHHHHHHHhcCCHhHHHHHHHH
Q 002658 137 KEACRDSIGSLSKLY---------------------LNG----KEE--N-NGTVVGLFVKPLFEAMMEQNKGVQSGAAMC 188 (896)
Q Consensus 137 R~Ac~~aLG~LA~~l---------------------i~~----~~e--~-~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasA 188 (896)
--+....+..++..- +.. +.+ + ....++.=+-.|+..|+..+++.-+..+.-
T Consensus 196 L~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~Di 275 (866)
T KOG1062|consen 196 LIAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMNDI 275 (866)
T ss_pred eeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence 655555544444431 000 000 0 001111112223333444455555555555
Q ss_pred HHHHHHhcC---CCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhccccC----------------cccHHHHHH
Q 002658 189 MAKMVECAS---DPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVGAIA----------------PQSLEPLLQ 249 (896)
Q Consensus 189 LAkIIE~a~---d~~~~yL~~LlPRL~kLLks~s~kaK~alL~aIgSLA~vga~~----------------~pyle~lLp 249 (896)
|+.++.+.+ +.--..|=+-+..+.-+.. +...|..++.+||-+....... +..+..=-.
T Consensus 276 LaqvatntdsskN~GnAILYE~V~TI~~I~~--~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~ 353 (866)
T KOG1062|consen 276 LAQVATNTDSSKNAGNAILYECVRTIMDIRS--NSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRS 353 (866)
T ss_pred HHHHHhcccccccchhHHHHHHHHHHHhccC--CchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHH
Confidence 555554431 1101122222222222222 2233444555555543211111 112222223
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHHHHhcchHHHhhHHHHHHHHHhh
Q 002658 250 SIHECLGSTDWATRKAAADALSALALHSSNLVIDGATSTLTVLEAC 295 (896)
Q Consensus 250 ~L~e~LsddDW~lRKaA~EaLgsLA~avGe~L~Py~~~~I~~LE~~ 295 (896)
.+++||.|.|-.+|+.|+|.+..|... ..+...+...|.+|+.+
T Consensus 354 tIleCL~DpD~SIkrralELs~~lvn~--~Nv~~mv~eLl~fL~~~ 397 (866)
T KOG1062|consen 354 TILECLKDPDVSIKRRALELSYALVNE--SNVRVMVKELLEFLESS 397 (866)
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHhcc--ccHHHHHHHHHHHHHhc
Confidence 588999999999999999999987654 45556678888888877
No 91
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=96.79 E-value=0.17 Score=62.35 Aligned_cols=156 Identities=17% Similarity=0.188 Sum_probs=106.5
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccchhhHH
Q 002658 40 EMKQKILTSLSKLADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVT 119 (896)
Q Consensus 40 ~Lk~rll~~L~KLsDRDT~k~Aa~eLD~La~~L~pd~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I~P~Lp 119 (896)
.|-..|+.... .-|-+..|.----|..+++. .|+..-..++.+...++++++..|-.|++.++.+= +...++
T Consensus 55 sLf~dViK~~~-trd~ElKrL~ylYl~~yak~-~P~~~lLavNti~kDl~d~N~~iR~~AlR~ls~l~------~~el~~ 126 (757)
T COG5096 55 SLFPDVIKNVA-TRDVELKRLLYLYLERYAKL-KPELALLAVNTIQKDLQDPNEEIRGFALRTLSLLR------VKELLG 126 (757)
T ss_pred HHHHHHHHHHH-hcCHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHhcC------hHHHHH
Confidence 33333444344 45666777777777777763 34344345677777788999999999999887653 345677
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHhh-hHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCC
Q 002658 120 KIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGL-FVKPLFEAMMEQNKGVQSGAAMCMAKMVECASD 198 (896)
Q Consensus 120 kIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~-lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~a~d 198 (896)
.+++.|.+.|.|+.+.||..|..+|+-|-+.=-+ -.+.. ++..+-+.+.|.+|.|-..|..+|..+.+.
T Consensus 127 ~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~-------l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e--- 196 (757)
T COG5096 127 NIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKD-------LYHELGLIDILKELVADSDPIVIANALASLAEIDPE--- 196 (757)
T ss_pred HHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHh-------hhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchh---
Confidence 8899999999999999999999998877643210 11223 344455555799999999999999888875
Q ss_pred CCchhHHHHHHHHHH
Q 002658 199 PPVVAFQKLCARICK 213 (896)
Q Consensus 199 ~~~~yL~~LlPRL~k 213 (896)
...+|+..++.++-.
T Consensus 197 ~a~~~~~~~~~~i~~ 211 (757)
T COG5096 197 LAHGYSLEVILRIPQ 211 (757)
T ss_pred hhhhHHHHHHHHhhh
Confidence 344666655544443
No 92
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.69 E-value=0.097 Score=63.88 Aligned_cols=253 Identities=13% Similarity=0.115 Sum_probs=161.2
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHhhhc--------CCCChhhHHHHHH-HHHHHHHHhcccchhhHHHHHHHHHHh
Q 002658 58 HQIAIEDLEKTIQTLSQESLPMLLNCLYESS--------NDPKPAVKKESVR-LLALVCELHSELTSTHVTKIISHIVKR 128 (896)
Q Consensus 58 ~k~Aa~eLD~La~~L~pd~Lp~fLs~L~es~--------ss~k~~vRKeAIl-lLG~IAeg~~d~I~P~LpkIL~~Ilrr 128 (896)
|-||-.-..-+...++.=..|+++..|.... .+.+...+|.|+. ++|..+--. -.+.++=.-+...++.-
T Consensus 414 RPCaE~L~~~lF~~ysqllvP~~l~~i~~a~~~~~pt~~~~l~a~L~KDAiYaa~g~~a~~l-~~~~dF~~Wl~~~llpE 492 (978)
T KOG1993|consen 414 RPCAEKLYKDLFDAYSQLLVPPVLDMIYSAQELQSPTVTEDLTALLLKDAIYAAFGLAAYEL-SNILDFDKWLQEALLPE 492 (978)
T ss_pred chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHHHH-HhcCCHHHHHHHhhCHH
Confidence 3345444555555554434777888885543 2334566666554 555554433 33333322223333333
Q ss_pred hcC--C-ChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhcC-CHhHHHHHHHHHHHHHHhc---CCCCc
Q 002658 129 LKD--S-DSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQ-NKGVQSGAAMCMAKMVECA---SDPPV 201 (896)
Q Consensus 129 LkD--p-Ds~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~Eq-nk~VQ~gAasALAkIIE~a---~d~~~ 201 (896)
|.. + --.+|.-..|.+|+.++.= ...+.-+.+...++..|.++ +..|--+++.+|..++++. ++...
T Consensus 493 l~~~~~~~RiiRRRVa~ilg~Wvsvq------~~~e~k~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFl 566 (978)
T KOG1993|consen 493 LANDHGNSRIIRRRVAWILGQWVSVQ------QKLELKPLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFL 566 (978)
T ss_pred hhhcccchhHHHHHHHHHHhhhhhee------chHhHHHHHHHHHHHhcCccccceeehHHHHHHHHhhhhccCChhhhh
Confidence 332 1 2356777777777766622 12345566666777777666 7788899999999999984 66777
Q ss_pred hhHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHH-hccccCcccHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHHHHhc
Q 002658 202 VAFQKLCARICKLLSN-QNFMAKASLLPVVGSLS-QVGAIAPQSLEPLLQSIHECL--GSTDWATRKAAADALSALALHS 277 (896)
Q Consensus 202 ~yL~~LlPRL~kLLks-~s~kaK~alL~aIgSLA-~vga~~~pyle~lLp~L~e~L--sddDW~lRKaA~EaLgsLA~av 277 (896)
+|++.+-.-++++|+. ..+.+|..+|+.++.++ .++....||.-.+++.|-..- ..+..-+|-+.+-+|-.+..++
T Consensus 567 p~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~P~~~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~al 646 (978)
T KOG1993|consen 567 PYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEHIAPYASTIVQYLPLLWEESEEEPLLRCALLATLRNLVNAL 646 (978)
T ss_pred hhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHh
Confidence 8998888888888875 46778999999999996 466666688877776655542 2245678999999999999999
Q ss_pred c---hHHHhhHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHhccC
Q 002658 278 S---NLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQLWKKIAGK 320 (896)
Q Consensus 278 G---e~L~Py~~~~I~~LE~~RfDKvKpVRDaA~eALe~WK~la~~ 320 (896)
| ..+-|++=++|++.-. -....+|- ..-.++++|..+-.-
T Consensus 647 g~qS~~~~~fL~pVIel~~D--~~sP~hv~-L~EDgmeLW~~~L~n 689 (978)
T KOG1993|consen 647 GAQSFEFYPFLYPVIELSTD--PSSPEHVY-LLEDGMELWLTTLMN 689 (978)
T ss_pred ccCCccchHHHHHHHHHhcC--CCCCceee-hhhhHHHHHHHHHhc
Confidence 9 4566777666665431 11222222 223589999987743
No 93
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=96.65 E-value=0.1 Score=65.44 Aligned_cols=234 Identities=16% Similarity=0.158 Sum_probs=149.9
Q ss_pred hHHHHHHHHHH-HHHcCC--ChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHhhh----cCCCChhhHHHHHHHHHHHHHH
Q 002658 37 AMVEMKQKILT-SLSKLA--DRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYES----SNDPKPAVKKESVRLLALVCEL 109 (896)
Q Consensus 37 ~~~~Lk~rll~-~L~KLs--DRDT~k~Aa~eLD~La~~L~pd~Lp~fLs~L~es----~ss~k~~vRKeAIllLG~IAeg 109 (896)
+.++..-.++. .|..+. |...+-.|++.+-+++..+|++...-.+.-+.+- -.+.-| .-++++|+.+|.
T Consensus 334 dv~eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad~vi~svid~~~p~e~~~aW---HgacLaLAELA~- 409 (1133)
T KOG1943|consen 334 DVPEIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELADQVIGSVIDLFNPAEDDSAW---HGACLALAELAL- 409 (1133)
T ss_pred ccHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHHHHHHHHHHHhcCcCCchhHH---HHHHHHHHHHHh-
Confidence 34444444444 345554 4457889999999999999865533334444331 122223 368888877775
Q ss_pred hcccchhhHHHHHHHHHHhhcCCC--------hHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHH-----hc
Q 002658 110 HSELTSTHVTKIISHIVKRLKDSD--------SGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAM-----ME 176 (896)
Q Consensus 110 ~~d~I~P~LpkIL~~IlrrLkDpD--------s~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL-----~E 176 (896)
.|=.+..-++.|+|.|++.|.-.+ .+||+|||..+=++++-+ .+ ..+..++..|+.+| =|
T Consensus 410 rGlLlps~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Ray-s~------~~l~p~l~~L~s~LL~~AlFD 482 (1133)
T KOG1943|consen 410 RGLLLPSLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAY-SP------SDLKPVLQSLASALLIVALFD 482 (1133)
T ss_pred cCCcchHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcC-Ch------hhhhHHHHHHHHHHHHHHhcC
Confidence 333344568999999999987654 589999999999999988 22 11233444444444 36
Q ss_pred CCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchh---hHHHHHHHHHHHHhccccCcccHHHHHHHHHH
Q 002658 177 QNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFM---AKASLLPVVGSLSQVGAIAPQSLEPLLQSIHE 253 (896)
Q Consensus 177 qnk~VQ~gAasALAkIIE~a~d~~~~yL~~LlPRL~kLLks~s~k---aK~alL~aIgSLA~vga~~~pyle~lLp~L~e 253 (896)
..-++--||+.||...+---++.+ .=+.++.+-+|- .+..++..|.-.+ +.++.|.+.++..|+-
T Consensus 483 revncRRAAsAAlqE~VGR~~n~p---------~Gi~Lis~~dy~sV~~rsNcy~~l~~~i---a~~~~y~~~~f~~L~t 550 (1133)
T KOG1943|consen 483 REVNCRRAASAALQENVGRQGNFP---------HGISLISTIDYFSVTNRSNCYLDLCVSI---AEFSGYREPVFNHLLT 550 (1133)
T ss_pred chhhHhHHHHHHHHHHhccCCCCC---------CchhhhhhcchhhhhhhhhHHHHHhHHH---HhhhhHHHHHHHHHHh
Confidence 777888899988887775432221 002223333332 2334444443332 4677777777766655
Q ss_pred h-hCCCCHHHHHHHHHHHHHHHHhcchHHH-hhHHHHHHHHH
Q 002658 254 C-LGSTDWATRKAAADALSALALHSSNLVI-DGATSTLTVLE 293 (896)
Q Consensus 254 ~-LsddDW~lRKaA~EaLgsLA~avGe~L~-Py~~~~I~~LE 293 (896)
. +.+=|..+|-.|+.+|..|....++.+. -|+.++|....
T Consensus 551 ~Kv~HWd~~irelaa~aL~~Ls~~~pk~~a~~~L~~lld~~l 592 (1133)
T KOG1943|consen 551 KKVCHWDVKIRELAAYALHKLSLTEPKYLADYVLPPLLDSTL 592 (1133)
T ss_pred cccccccHHHHHHHHHHHHHHHHhhHHhhcccchhhhhhhhc
Confidence 4 6676888999999999999999998877 44677777654
No 94
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=96.62 E-value=0.027 Score=63.15 Aligned_cols=260 Identities=15% Similarity=0.125 Sum_probs=160.5
Q ss_pred CChhHHHHHHHHHHHHHhc--------CCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhccc-chhhHHHHHH
Q 002658 53 ADRDTHQIAIEDLEKTIQT--------LSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSEL-TSTHVTKIIS 123 (896)
Q Consensus 53 sDRDT~k~Aa~eLD~La~~--------L~pd~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~-I~P~LpkIL~ 123 (896)
+..|.+.+|+=+|-.++.. |....+.++|..|.+.-.+ -..+ +-+--.|.++|+|-... --..+.+.+|
T Consensus 169 ~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~-isml-Rn~TWtLSNlcRGknP~P~w~~isqalp 246 (526)
T COG5064 169 TEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIH-ISML-RNATWTLSNLCRGKNPPPDWSNISQALP 246 (526)
T ss_pred chHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccch-HHHH-HHhHHHHHHhhCCCCCCCchHHHHHHHH
Confidence 3456777777777666642 1233477888888743221 1233 34556678888875433 2446888899
Q ss_pred HHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHh-hhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCch
Q 002658 124 HIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVG-LFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVV 202 (896)
Q Consensus 124 ~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~-~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~a~d~~~~ 202 (896)
.+.+.+---|+.|-.-|||+|.-|+.---.. ...++. -+.+.|+++|...+..+|.-|.-+...++-+.+++..-
T Consensus 247 iL~KLiys~D~evlvDA~WAiSYlsDg~~E~----i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqv 322 (526)
T COG5064 247 ILAKLIYSRDPEVLVDACWAISYLSDGPNEK----IQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQV 322 (526)
T ss_pred HHHHHHhhcCHHHHHHHHHHHHHhccCcHHH----HHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceeh
Confidence 9999998889989889999998766433111 111121 14467999998888999999998888888766554433
Q ss_pred hHH-HHHHHHHHHhcCCchhhH-HHHHHHHHHHHhcc--ccCcccHH-HHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhc
Q 002658 203 AFQ-KLCARICKLLSNQNFMAK-ASLLPVVGSLSQVG--AIAPQSLE-PLLQSIHECLGSTDWATRKAAADALSALALHS 277 (896)
Q Consensus 203 yL~-~LlPRL~kLLks~s~kaK-~alL~aIgSLA~vg--a~~~pyle-~lLp~L~e~LsddDW~lRKaA~EaLgsLA~av 277 (896)
.++ -.++-|-.+|.++.-.+| ++|-.. +-+ .+| ......++ .++|.|...|+.-+..+||.||=++......-
T Consensus 323 iI~~G~L~a~~~lLs~~ke~irKEaCWTi-SNI-TAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg 400 (526)
T COG5064 323 IINCGALKAFRSLLSSPKENIRKEACWTI-SNI-TAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGG 400 (526)
T ss_pred heecccHHHHHHHhcChhhhhhhhhheee-ccc-ccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 332 134555666888765544 444332 221 222 22222233 46799999999999999999999988765543
Q ss_pred c--hHHHhhH--HHHHHHHHhhhcCCChhhHHHHHHHHHHHHHhccC
Q 002658 278 S--NLVIDGA--TSTLTVLEACRFDKIKPVRDSMNEALQLWKKIAGK 320 (896)
Q Consensus 278 G--e~L~Py~--~~~I~~LE~~RfDKvKpVRDaA~eALe~WK~la~~ 320 (896)
- +.+.-|+ +.+|+.|+...--.+-.+-++++.+++-...+...
T Consensus 401 ~~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk~Ge~ 447 (526)
T COG5064 401 LNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILKVGEQ 447 (526)
T ss_pred cCCchHHHHHHHccchhHHHHHHhccCccchhhhHHHHHHHHhhhhH
Confidence 2 3333353 55677665332221222447877777776665533
No 95
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.60 E-value=0.13 Score=62.87 Aligned_cols=209 Identities=17% Similarity=0.226 Sum_probs=115.6
Q ss_pred HHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCc
Q 002658 81 LNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNG 160 (896)
Q Consensus 81 Ls~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~ 160 (896)
++.++..+.++++.+|-.|+++|.-| .--.| -|-|+-.|.+...|+.+.||..|+.+|--|=+.= .
T Consensus 110 IntfQk~L~DpN~LiRasALRvlSsI---Rvp~I---aPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd--------~ 175 (968)
T KOG1060|consen 110 INTFQKALKDPNQLIRASALRVLSSI---RVPMI---APIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLD--------P 175 (968)
T ss_pred HHHHHhhhcCCcHHHHHHHHHHHHhc---chhhH---HHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCC--------h
Confidence 34455555667777777777666322 11112 2344667777777888888887777766443221 1
Q ss_pred hhHhhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcc---
Q 002658 161 TVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVG--- 237 (896)
Q Consensus 161 ~~~~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~a~d~~~~yL~~LlPRL~kLLks~s~kaK~alL~aIgSLA~vg--- 237 (896)
+..++++..+=..|.+..+-|-.+|.+|+..+|-+--++ +++=..|||.+|.+-..=-+..+|..+---|.-+
T Consensus 176 e~k~qL~e~I~~LLaD~splVvgsAv~AF~evCPerldL----IHknyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~ 251 (968)
T KOG1060|consen 176 EQKDQLEEVIKKLLADRSPLVVGSAVMAFEEVCPERLDL----IHKNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPD 251 (968)
T ss_pred hhHHHHHHHHHHHhcCCCCcchhHHHHHHHHhchhHHHH----hhHHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCC
Confidence 334566666666678899999999999988888542223 3333444455554322212223333333222111
Q ss_pred c---------------------------cCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcchHHHhhHHHHHH
Q 002658 238 A---------------------------IAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSSNLVIDGATSTLT 290 (896)
Q Consensus 238 a---------------------------~~~pyle~lLp~L~e~LsddDW~lRKaA~EaLgsLA~avGe~L~Py~~~~I~ 290 (896)
. ...+=+..+++++..+|.+.+..+=-++|+++..||--.. ..-.+..++.
T Consensus 252 P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~~--~~~i~kaLvr 329 (968)
T KOG1060|consen 252 PTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKNQ--VTKIAKALVR 329 (968)
T ss_pred ccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHHH--HHHHHHHHHH
Confidence 0 0122345667777777777777777788888777765432 1111233333
Q ss_pred HHHhhhcCCChhhHHHHHHHHHHH
Q 002658 291 VLEACRFDKIKPVRDSMNEALQLW 314 (896)
Q Consensus 291 ~LE~~RfDKvKpVRDaA~eALe~W 314 (896)
.|. ..+.|+.++++.+.+.
T Consensus 330 LLr-----s~~~vqyvvL~nIa~~ 348 (968)
T KOG1060|consen 330 LLR-----SNREVQYVVLQNIATI 348 (968)
T ss_pred HHh-----cCCcchhhhHHHHHHH
Confidence 222 3344666666655544
No 96
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=96.48 E-value=0.33 Score=59.20 Aligned_cols=168 Identities=11% Similarity=0.106 Sum_probs=116.8
Q ss_pred CHHHHHHHHhhhc-------CC-CChhhHHHHHHHHHHHHHHhcccc---hhhHH-HHHHHHHHhhcCCChHHHHHHHHH
Q 002658 76 SLPMLLNCLYESS-------ND-PKPAVKKESVRLLALVCELHSELT---STHVT-KIISHIVKRLKDSDSGMKEACRDS 143 (896)
Q Consensus 76 ~Lp~fLs~L~es~-------ss-~k~~vRKeAIllLG~IAeg~~d~I---~P~Lp-kIL~~IlrrLkDpDs~VR~Ac~~a 143 (896)
.|.++|+++.+.+ .+ .++...+.|+++|+.+.. .-... +..+. -|++++++.++++---++.-+|+.
T Consensus 405 TfqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s-~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~ 483 (970)
T COG5656 405 TFQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKS-FITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEF 483 (970)
T ss_pred hhhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHH-HhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHH
Confidence 4777777776654 12 345566669999999988 33332 33333 357889999999999999999999
Q ss_pred HHHHHHHHhcccccCCchhHhhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhc--CCCCchhHHHHHHHHHHHhcCCchh
Q 002658 144 IGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECA--SDPPVVAFQKLCARICKLLSNQNFM 221 (896)
Q Consensus 144 LG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~a--~d~~~~yL~~LlPRL~kLLks~s~k 221 (896)
+..+.....+. ...-+++...+.+|..+.-.|+.-||.||..++-+. .+...+.++.+|.+|+.+-+.-...
T Consensus 484 is~~eeDfkd~------~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsLSn~feiD 557 (970)
T COG5656 484 ISTIEEDFKDN------GILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSLSNTFEID 557 (970)
T ss_pred HHHHHHhcccc------hHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHhcccccch
Confidence 99997777433 346667788888888888899999999999999764 3444567888899988887753333
Q ss_pred hHHHHHHH-HHHHHhccccCcccHHHHHHHHHH
Q 002658 222 AKASLLPV-VGSLSQVGAIAPQSLEPLLQSIHE 253 (896)
Q Consensus 222 aK~alL~a-IgSLA~vga~~~pyle~lLp~L~e 253 (896)
+=..+++. ++.++ ....||...++..|.+
T Consensus 558 ~LS~vMe~fVe~fs---eELspfa~eLa~~Lv~ 587 (970)
T COG5656 558 PLSMVMESFVEYFS---EELSPFAPELAGSLVR 587 (970)
T ss_pred HHHHHHHHHHHHhH---HhhchhHHHHHHHHHH
Confidence 22233322 22222 3456777777766655
No 97
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.43 E-value=0.12 Score=63.09 Aligned_cols=220 Identities=18% Similarity=0.249 Sum_probs=149.7
Q ss_pred chhhhHhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhcCC-CCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHH
Q 002658 31 SLSSHLAMVEMKQKILTSLSKLADRDTHQIAIEDLEKTIQTLS-QESLPMLLNCLYESSNDPKPAVKKESVRLLALVCEL 109 (896)
Q Consensus 31 ~~s~~~~~~~Lk~rll~~L~KLsDRDT~k~Aa~eLD~La~~L~-pd~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg 109 (896)
++.++.+.+++|.++...-. +.++-|+ .+++..+. ..++..+++-+...++..+-..+|-+.+-+.+-+.+
T Consensus 8 ~~~~k~ei~elks~l~s~~~-----~kr~~a~---kkvIa~Mt~G~DvSslF~dvvk~~~T~dlelKKlvyLYl~nYa~~ 79 (734)
T KOG1061|consen 8 STDKKGEIPELKSQLNSQSK-----EKRKDAV---KKVIAYMTVGKDVSSLFPDVVKCMQTRDLELKKLVYLYLMNYAKG 79 (734)
T ss_pred CcchhhhchHHHHHhhhhhh-----hhHHHHH---HHHHhcCccCcchHhhhHHHHhhcccCCchHHHHHHHHHHHhhcc
Confidence 44558899999999933333 5566655 45555442 235556666666566667788999999999999999
Q ss_pred hcccchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhcCCHhHHHHHHHHH
Q 002658 110 HSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCM 189 (896)
Q Consensus 110 ~~d~I~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasAL 189 (896)
+++.-.- -+.++++-..|+++.+|..|..++|.+- ....+..++.||..++.+.++.|+..|+.|.
T Consensus 80 ~P~~a~~----avnt~~kD~~d~np~iR~lAlrtm~~l~----------v~~i~ey~~~Pl~~~l~d~~~yvRktaa~~v 145 (734)
T KOG1061|consen 80 KPDLAIL----AVNTFLKDCEDPNPLIRALALRTMGCLR----------VDKITEYLCDPLLKCLKDDDPYVRKTAAVCV 145 (734)
T ss_pred CchHHHh----hhhhhhccCCCCCHHHHHHHhhceeeEe----------ehHHHHHHHHHHHHhccCCChhHHHHHHHHH
Confidence 9876221 1678999999999999999888776431 2255777899999999999999999999999
Q ss_pred HHHHHhcCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhccc--cCcccHHHHHHHHHHhhCC-CCHHHHHHH
Q 002658 190 AKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVGA--IAPQSLEPLLQSIHECLGS-TDWATRKAA 266 (896)
Q Consensus 190 AkIIE~a~d~~~~yL~~LlPRL~kLLks~s~kaK~alL~aIgSLA~vga--~~~pyle~lLp~L~e~Lsd-dDW~lRKaA 266 (896)
+++-...++... -.-+++.|-.++.+.+..+-+.++.++.-+..... ........++..+++.+.. +.|..
T Consensus 146 akl~~~~~~~~~--~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec~EW~q---- 219 (734)
T KOG1061|consen 146 AKLFDIDPDLVE--DSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNECTEWGQ---- 219 (734)
T ss_pred HHhhcCChhhcc--ccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHhhhhhH----
Confidence 998764332211 12367777778888888887888888877753221 1111122333334444433 45764
Q ss_pred HHHHHHHHHhcc
Q 002658 267 ADALSALALHSS 278 (896)
Q Consensus 267 ~EaLgsLA~avG 278 (896)
+..|..++..++
T Consensus 220 i~IL~~l~~y~p 231 (734)
T KOG1061|consen 220 IFILDCLAEYVP 231 (734)
T ss_pred HHHHHHHHhcCC
Confidence 566777777777
No 98
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=96.39 E-value=0.0059 Score=45.27 Aligned_cols=30 Identities=37% Similarity=0.439 Sum_probs=26.9
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHHHHh
Q 002658 247 LLQSIHECLGSTDWATRKAAADALSALALH 276 (896)
Q Consensus 247 lLp~L~e~LsddDW~lRKaA~EaLgsLA~a 276 (896)
+||.+++.+.|++|.+|.+|+.+|+.|+..
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 689999999999999999999999999864
No 99
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=96.35 E-value=0.027 Score=58.57 Aligned_cols=116 Identities=12% Similarity=0.124 Sum_probs=91.4
Q ss_pred HhhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHh-cCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHH----hcc
Q 002658 163 VGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVEC-ASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLS----QVG 237 (896)
Q Consensus 163 ~~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~-a~d~~~~yL~~LlPRL~kLLks~s~kaK~alL~aIgSLA----~vg 237 (896)
+..+|+.+++.|.|....-.--|..++..+++. .++.+.++|++|++-|-..|++.+..+..++|.+|..++ .+|
T Consensus 36 y~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG 115 (183)
T PF10274_consen 36 YHHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVG 115 (183)
T ss_pred hhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhh
Confidence 567999999999887666666677778888887 777888999999999999999999999999999999883 356
Q ss_pred ccCcccHHHHHHHHHHhhCCC-----------CHHHHHHHHHHHHHHHHhcc
Q 002658 238 AIAPQSLEPLLQSIHECLGST-----------DWATRKAAADALSALALHSS 278 (896)
Q Consensus 238 a~~~pyle~lLp~L~e~Lsdd-----------DW~lRKaA~EaLgsLA~avG 278 (896)
....||+..++|.+--+.... ...++-...|+|..+-..-|
T Consensus 116 ~aLvPyyrqLLp~ln~f~~k~~n~gd~i~y~~~~~~~dlI~etL~~lE~~GG 167 (183)
T PF10274_consen 116 EALVPYYRQLLPVLNLFKNKNVNLGDGIDYRKRKNLGDLIQETLELLERNGG 167 (183)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHhcC
Confidence 778999999999987554322 24455556666666666666
No 100
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=96.33 E-value=0.08 Score=65.10 Aligned_cols=152 Identities=17% Similarity=0.248 Sum_probs=113.3
Q ss_pred HHHHHhcC-CCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhhcCCChHHHHHHHHH
Q 002658 65 LEKTIQTL-SQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDS 143 (896)
Q Consensus 65 LD~La~~L-~pd~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrLkDpDs~VR~Ac~~a 143 (896)
+.+++..+ -.+.++-|++.+.....+.+...||-+-+=|-..++.+++... --+.++.+-|+||++.+|..|..+
T Consensus 40 mK~iIa~M~~G~dmssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~l----LavNti~kDl~d~N~~iR~~AlR~ 115 (757)
T COG5096 40 MKKIIAQMSLGEDMSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELAL----LAVNTIQKDLQDPNEEIRGFALRT 115 (757)
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHH----HHHHHHHhhccCCCHHHHHHHHHH
Confidence 34455443 3446888988888777688899999999999999999985421 127789999999999999999988
Q ss_pred HHHHHHHHhcccccCCchhHhhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCchhHHH-HHHHHHHHhcCCchhh
Q 002658 144 IGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQK-LCARICKLLSNQNFMA 222 (896)
Q Consensus 144 LG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~a~d~~~~yL~~-LlPRL~kLLks~s~ka 222 (896)
++.|= ..+.+..+++|+.+++.+.++.|-..|+.|+.++-+-.++. |.+. ++.-+..++.+.+..+
T Consensus 116 ls~l~----------~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l---~~~~g~~~~l~~l~~D~dP~V 182 (757)
T COG5096 116 LSLLR----------VKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDL---YHELGLIDILKELVADSDPIV 182 (757)
T ss_pred HHhcC----------hHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhh---hhcccHHHHHHHHhhCCCchH
Confidence 87442 13568889999999999999999999999999998754332 2222 4555566666667776
Q ss_pred HHHHHHHHHHH
Q 002658 223 KASLLPVVGSL 233 (896)
Q Consensus 223 K~alL~aIgSL 233 (896)
.++++.++..+
T Consensus 183 i~nAl~sl~~i 193 (757)
T COG5096 183 IANALASLAEI 193 (757)
T ss_pred HHHHHHHHHHh
Confidence 66655554443
No 101
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.28 E-value=0.4 Score=59.28 Aligned_cols=223 Identities=12% Similarity=0.134 Sum_probs=151.9
Q ss_pred HHHHHHcCCChh--HHHHHHHHHHHHHhcCCCCC---HHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccchhhHH
Q 002658 45 ILTSLSKLADRD--THQIAIEDLEKTIQTLSQES---LPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVT 119 (896)
Q Consensus 45 ll~~L~KLsDRD--T~k~Aa~eLD~La~~L~pd~---Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I~P~Lp 119 (896)
+-..+..+.|.. ++..|+.+|..+++.=.+.. -..+|..+.++..+.++++-=.||..+..+|+.+++.+.|-|
T Consensus 729 ~qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e~il~dL- 807 (982)
T KOG4653|consen 729 LQEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPEDILPDL- 807 (982)
T ss_pred HHHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcchhhHHHH-
Confidence 444556665554 78899999999998432222 345577778888899999999999999999999888776544
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHH----hcCCHhHHHHHHHHHHHHHHh
Q 002658 120 KIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAM----MEQNKGVQSGAAMCMAKMVEC 195 (896)
Q Consensus 120 kIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL----~Eqnk~VQ~gAasALAkIIE~ 195 (896)
..+....=+-+.+.-|--.+++++.++... + +.+..+..+|+... .|++-..-+.++..|..+|.-
T Consensus 808 --~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~---G-----el~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~ 877 (982)
T KOG4653|consen 808 --SEEYLSEKKKLQTDYRLKVGEAILKVAQAL---G-----ELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQL 877 (982)
T ss_pred --HHHHHhcccCCCccceehHHHHHHHHHHHh---c-----cHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHH
Confidence 444444433343445555678888888887 2 34555555555554 456555678899999999998
Q ss_pred cCCCCchhHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHH-hccccCcc----cHHHHHHHHHHhh-CCCCHHHHHHHHH
Q 002658 196 ASDPPVVAFQKLCARICKLLSN-QNFMAKASLLPVVGSLS-QVGAIAPQ----SLEPLLQSIHECL-GSTDWATRKAAAD 268 (896)
Q Consensus 196 a~d~~~~yL~~LlPRL~kLLks-~s~kaK~alL~aIgSLA-~vga~~~p----yle~lLp~L~e~L-sddDW~lRKaA~E 268 (896)
..-.....+..+...++.+... ..+.+|-+++.+|..+- +.|....| |+-.+...+.... .++|-.+|..||.
T Consensus 878 ~a~~vsd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql 957 (982)
T KOG4653|consen 878 LAFQVSDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQL 957 (982)
T ss_pred HhhhhhHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHH
Confidence 6555556888888888888875 57788989999988875 34533333 2223333333332 3456678888888
Q ss_pred HHHHHHHhcc
Q 002658 269 ALSALALHSS 278 (896)
Q Consensus 269 aLgsLA~avG 278 (896)
||-.|-.+..
T Consensus 958 ~leei~a~l~ 967 (982)
T KOG4653|consen 958 CLEEIQAALE 967 (982)
T ss_pred HHHHHHHHHH
Confidence 8877766655
No 102
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=96.26 E-value=0.11 Score=52.74 Aligned_cols=136 Identities=14% Similarity=0.128 Sum_probs=96.7
Q ss_pred CHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHh-cccchhhHHHHHHHHHHhhcCCCh-HHHHHHHHHHHHHHHHHhc
Q 002658 76 SLPMLLNCLYESSNDPKPAVKKESVRLLALVCELH-SELTSTHVTKIISHIVKRLKDSDS-GMKEACRDSIGSLSKLYLN 153 (896)
Q Consensus 76 ~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~-~d~I~P~LpkIL~~IlrrLkDpDs-~VR~Ac~~aLG~LA~~li~ 153 (896)
.+.-+...|..-.++..+..|-.++.+++++++-| ++.+..|-..-+..++..|+.+++ .+..+|+.+++.|...+.+
T Consensus 22 ~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~ 101 (165)
T PF08167_consen 22 ALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRG 101 (165)
T ss_pred HHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 35666666666677888999999999999999998 577777778888888888888775 7799999999999998844
Q ss_pred cc-c--cCCchhHhhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHH
Q 002658 154 GK-E--ENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICK 213 (896)
Q Consensus 154 ~~-~--e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~a~d~~~~yL~~LlPRL~k 213 (896)
-. . +......+.++..|+..+.+ ..+...+..+|..++..-+....++..++-..+..
T Consensus 102 ~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~ptt~rp~~~ki~~~l~~ 162 (165)
T PF08167_consen 102 KPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPTTFRPFANKIESALLS 162 (165)
T ss_pred CCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCccccchHHHHHHHHHH
Confidence 21 0 00113355555555555543 56667788888888877666666665555444443
No 103
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=96.26 E-value=0.075 Score=57.85 Aligned_cols=184 Identities=15% Similarity=0.198 Sum_probs=123.1
Q ss_pred HHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhc-CCCCCHHH--HHHHHhhhcCCCChhhHHHHHHHHHHHHHHhcc--
Q 002658 38 MVEMKQKILTSLSKLADRDTHQIAIEDLEKTIQT-LSQESLPM--LLNCLYESSNDPKPAVKKESVRLLALVCELHSE-- 112 (896)
Q Consensus 38 ~~~Lk~rll~~L~KLsDRDT~k~Aa~eLD~La~~-L~pd~Lp~--fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d-- 112 (896)
..+| ++++..|....|...+..|+-.|-..+.. ...+.+.- -++.|...++++++.+|..|+.+|.+++.....
T Consensus 11 ~~~l-~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~ 89 (254)
T PF04826_consen 11 AQEL-QKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQE 89 (254)
T ss_pred HHHH-HHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHH
Confidence 3445 78888888889999999999888876642 11111222 255566666788999999999999988776553
Q ss_pred cchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhcCCHhHHHHHHHHHHHH
Q 002658 113 LTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKM 192 (896)
Q Consensus 113 ~I~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasALAkI 192 (896)
.+..|+++|+..++.. .-++.++.++...|+.|+ +... ....+...++.|+..|...+..+|.-+.-+|..+
T Consensus 90 ~Ik~~i~~Vc~~~~s~--~lns~~Q~agLrlL~nLt--v~~~----~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nL 161 (254)
T PF04826_consen 90 QIKMYIPQVCEETVSS--PLNSEVQLAGLRLLTNLT--VTND----YHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNL 161 (254)
T ss_pred HHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHccC--CCcc----hhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence 3677888888776653 247788888888888775 2111 1244666888889888888888988888888888
Q ss_pred HHhcCCCCchhHH-HHHHHHHHHhcCCchhhHHHHHHHHHHH
Q 002658 193 VECASDPPVVAFQ-KLCARICKLLSNQNFMAKASLLPVVGSL 233 (896)
Q Consensus 193 IE~a~d~~~~yL~-~LlPRL~kLLks~s~kaK~alL~aIgSL 233 (896)
-++. +...++|. +.+..|+.+|+... .+..++.+|--+
T Consensus 162 S~np-~~~~~Ll~~q~~~~~~~Lf~~~~--~~~~l~~~l~~~ 200 (254)
T PF04826_consen 162 SENP-DMTRELLSAQVLSSFLSLFNSSE--SKENLLRVLTFF 200 (254)
T ss_pred ccCH-HHHHHHHhccchhHHHHHHccCC--ccHHHHHHHHHH
Confidence 7752 11112222 46678888887542 234444444433
No 104
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.18 E-value=0.051 Score=68.50 Aligned_cols=168 Identities=17% Similarity=0.200 Sum_probs=122.6
Q ss_pred HHHHHHHHHHHHhcc-cccCCchhHhhhHHHHHHHHh----cCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHH
Q 002658 140 CRDSIGSLSKLYLNG-KEENNGTVVGLFVKPLFEAMM----EQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKL 214 (896)
Q Consensus 140 c~~aLG~LA~~li~~-~~e~~~~~~~~lL~pL~eaL~----Eqnk~VQ~gAasALAkIIE~a~d~~~~yL~~LlPRL~kL 214 (896)
+-+.+.-+...+.+. -.-+-...+..|+|.+.+.+. -++|..|.+|..||.+++= ....|...=+|-|+.+
T Consensus 893 seDd~~d~i~~icE~eLl~gek~lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~----iSa~fces~l~llfti 968 (1251)
T KOG0414|consen 893 SEDDLADLISGICEKELLYGEKSLLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMC----ISAEFCESHLPLLFTI 968 (1251)
T ss_pred cchhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHH
Confidence 344455555555331 111114667788888888883 4589999999999999873 1235677778889999
Q ss_pred hc-CCchhhHHHHHHHHHHHHhccccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcchHHHhhHHHHHHHHH
Q 002658 215 LS-NQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSSNLVIDGATSTLTVLE 293 (896)
Q Consensus 215 Lk-s~s~kaK~alL~aIgSLA~vga~~~pyle~lLp~L~e~LsddDW~lRKaA~EaLgsLA~avGe~L~Py~~~~I~~LE 293 (896)
+. +|+..+|..++-++|-++- .|+..++..-+.|...|.|++..+||.|.-+|..|-..-==++.-|+ .-|-
T Consensus 969 meksp~p~IRsN~VvalgDlav---~fpnlie~~T~~Ly~rL~D~~~~vRkta~lvlshLILndmiKVKGql----~eMA 1041 (1251)
T KOG0414|consen 969 MEKSPSPRIRSNLVVALGDLAV---RFPNLIEPWTEHLYRRLRDESPSVRKTALLVLSHLILNDMIKVKGQL----SEMA 1041 (1251)
T ss_pred HhcCCCceeeecchheccchhh---hcccccchhhHHHHHHhcCccHHHHHHHHHHHHHHHHhhhhHhcccH----HHHH
Confidence 96 8999999988877777753 57888899999999999999999999999999876543322222232 2334
Q ss_pred hhhcCCChhhHHHHHHHHHHHHHhccCC
Q 002658 294 ACRFDKIKPVRDSMNEALQLWKKIAGKV 321 (896)
Q Consensus 294 ~~RfDKvKpVRDaA~eALe~WK~la~~~ 321 (896)
-|--|.+..+|+. |=.|+++++..+
T Consensus 1042 ~cl~D~~~~Isdl---Ak~FF~Els~k~ 1066 (1251)
T KOG0414|consen 1042 LCLEDPNAEISDL---AKSFFKELSSKG 1066 (1251)
T ss_pred HHhcCCcHHHHHH---HHHHHHHhhhcc
Confidence 5556999989988 788999999664
No 105
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=96.07 E-value=1.2 Score=55.64 Aligned_cols=215 Identities=16% Similarity=0.135 Sum_probs=141.0
Q ss_pred HHHHHHHHhhhc-CCCChhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhccc
Q 002658 77 LPMLLNCLYESS-NDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGK 155 (896)
Q Consensus 77 Lp~fLs~L~es~-ss~k~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~ 155 (896)
+..||....... -+..+++|-.+++++.-.+ -..-+.|.+|.|+-.|+....+....|-....++|...+..= +.
T Consensus 488 ~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~--~~~vl~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~d--pe 563 (1005)
T KOG2274|consen 488 LQHFLNATVNALTMDVPPPVKISAVRAFCGYC--KVKVLLSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVKLD--PE 563 (1005)
T ss_pred HHHHHHHHHHhhccCCCCchhHHHHHHHHhcc--CceeccccchHHHHHHHHHcccccHHHHHHHHHHHHHHhccC--hh
Confidence 444444444332 4566778888888775444 224479999999999999999999999999998888776654 22
Q ss_pred ccCCchhHhhhHHHHHHHH--hcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchh----hHHHHHHH
Q 002658 156 EENNGTVVGLFVKPLFEAM--MEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFM----AKASLLPV 229 (896)
Q Consensus 156 ~e~~~~~~~~lL~pL~eaL--~Eqnk~VQ~gAasALAkIIE~a~d~~~~yL~~LlPRL~kLLks~s~k----aK~alL~a 229 (896)
+. ...-..++|-++... ...+|.|-.-+--|+.++++.+.. -.++...++|-|+.+|+.+.-+ .-..+++.
T Consensus 564 f~--as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~-~g~m~e~~iPslisil~~~~~~~~~~l~~~aidv 640 (1005)
T KOG2274|consen 564 FA--ASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAAN-YGPMQERLIPSLISVLQLNADKAPAGLCAIAIDV 640 (1005)
T ss_pred hh--hhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHh-hcchHHHHHHHHHHHHcCcccccCchhhHHHHHH
Confidence 11 122222333333333 245666666688888888886432 2367888999999999987633 34578888
Q ss_pred HHHHHhcc--ccCcccHHHHHHHHHHh-hCCCCHHHHHHHHHHHHHHHHhcchHHHhh-------HHHHHHHHHhhhcCC
Q 002658 230 VGSLSQVG--AIAPQSLEPLLQSIHEC-LGSTDWATRKAAADALSALALHSSNLVIDG-------ATSTLTVLEACRFDK 299 (896)
Q Consensus 230 IgSLA~vg--a~~~pyle~lLp~L~e~-LsddDW~lRKaA~EaLgsLA~avGe~L~Py-------~~~~I~~LE~~RfDK 299 (896)
|..+...+ ....-.+..+.|++.+| |.++|-.+--.+-|||.++.....+.+..+ +..+|+++. ..+|+
T Consensus 641 Lttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~eq~~t~~~e~g~~~~yImqV~s-qLLdp 719 (1005)
T KOG2274|consen 641 LTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISVTLEQLLTWHDEPGHNLWYIMQVLS-QLLDP 719 (1005)
T ss_pred HHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCHHHHHhhccCCCccHHHHHHHHH-HHcCC
Confidence 88887644 22233444556777776 566788899999999999887765544433 225555554 44443
No 106
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=96.02 E-value=0.088 Score=57.51 Aligned_cols=201 Identities=18% Similarity=0.245 Sum_probs=107.4
Q ss_pred CHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhccc
Q 002658 76 SLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGK 155 (896)
Q Consensus 76 ~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~ 155 (896)
.++.+..-+. +.++.|.+|.+|..+||.+.. +.+++++-+-.+||...||..|--++.++-..- .
T Consensus 68 Av~~l~~vl~--desq~pmvRhEAaealga~~~----------~~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~-~-- 132 (289)
T KOG0567|consen 68 AVPVLVEVLL--DESQEPMVRHEAAEALGAIGD----------PESLEILTKYIKDPCKEVRETCELAIKRLEWKD-I-- 132 (289)
T ss_pred hhHHHHHHhc--ccccchHHHHHHHHHHHhhcc----------hhhHHHHHHHhcCCccccchHHHHHHHHHHHhh-c--
Confidence 3655555555 345679999999999998762 223444455558999999999888887764322 1
Q ss_pred ccCCchhHhhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHh
Q 002658 156 EENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQ 235 (896)
Q Consensus 156 ~e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~a~d~~~~yL~~LlPRL~kLLks~s~kaK~alL~aIgSLA~ 235 (896)
.+ .. .. ...+.. .++.+..-.....-|...+= +.-.+ +..|-..+|.=.+.....++...+-++..
T Consensus 133 ~~---~~-~~--~~p~~S-vdPa~p~~~ssv~~lr~~ll---d~t~~----l~~Ry~amF~LRn~g~EeaI~al~~~l~~ 198 (289)
T KOG0567|consen 133 ID---KI-AN--SSPYIS-VDPAPPANLSSVHELRAELL---DETKP----LFERYRAMFYLRNIGTEEAINALIDGLAD 198 (289)
T ss_pred cc---cc-cc--cCcccc-CCCCCccccccHHHHHHHHH---hcchh----HHHHHhhhhHhhccCcHHHHHHHHHhccc
Confidence 00 00 00 000011 23333311111222222221 11111 22222222221111112222222222210
Q ss_pred ccccCccc---------HHHHHHHHHHhhCC--CCHHHHHHHHHHHHHHHHhcchHHHhhHHHHHHHHHhhhcCCChhhH
Q 002658 236 VGAIAPQS---------LEPLLQSIHECLGS--TDWATRKAAADALSALALHSSNLVIDGATSTLTVLEACRFDKIKPVR 304 (896)
Q Consensus 236 vga~~~py---------le~lLp~L~e~Lsd--dDW~lRKaA~EaLgsLA~avGe~L~Py~~~~I~~LE~~RfDKvKpVR 304 (896)
-.+.|..- -+..+|.|.+.|.+ +...+|--|+++||.||. +.|+++|...--|..+-||
T Consensus 199 ~SalfrhEvAfVfGQl~s~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~----------e~~~~vL~e~~~D~~~vv~ 268 (289)
T KOG0567|consen 199 DSALFRHEVAFVFGQLQSPAAIPSLIKVLLDETEHPMVRHEAAEALGAIAD----------EDCVEVLKEYLGDEERVVR 268 (289)
T ss_pred chHHHHHHHHHHHhhccchhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC----------HHHHHHHHHHcCCcHHHHH
Confidence 00112100 12347788887766 578899999999999987 6899999999999999899
Q ss_pred HHHHHHHHHHH
Q 002658 305 DSMNEALQLWK 315 (896)
Q Consensus 305 DaA~eALe~WK 315 (896)
+...-||+...
T Consensus 269 esc~valdm~e 279 (289)
T KOG0567|consen 269 ESCEVALDMLE 279 (289)
T ss_pred HHHHHHHHHHH
Confidence 87777776654
No 107
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=95.95 E-value=0.35 Score=57.53 Aligned_cols=203 Identities=17% Similarity=0.173 Sum_probs=128.4
Q ss_pred HHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccc-hhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhccc
Q 002658 77 LPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELT-STHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGK 155 (896)
Q Consensus 77 Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I-~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~ 155 (896)
+..+-++|..-..+.--.+--++-+++-.+++ +.+ ..++...++.+...|+-+....|-+|..+|.+|+....+
T Consensus 262 ~~q~rpfL~~wls~k~emV~lE~Ar~v~~~~~---~nv~~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~-- 336 (898)
T COG5240 262 LLQLRPFLNSWLSDKFEMVFLEAARAVCALSE---ENVGSQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQ-- 336 (898)
T ss_pred HHHHHHHHHHHhcCcchhhhHHHHHHHHHHHH---hccCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCc--
Confidence 55666666655555444455555555544444 344 446778888888899999999999999999999988832
Q ss_pred ccCCchhHhhhHHHHHHHH-hcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHH
Q 002658 156 EENNGTVVGLFVKPLFEAM-MEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLS 234 (896)
Q Consensus 156 ~e~~~~~~~~lL~pL~eaL-~Eqnk~VQ~gAasALAkIIE~a~d~~~~yL~~LlPRL~kLLks~s~kaK~alL~aIgSLA 234 (896)
...++.+=++.| .+.|+.+- .+|+..++..-. .+-++.|+-.+..++.+-+--.|-.++++|.++.
T Consensus 337 -------kv~vcN~evEsLIsd~Nr~Is---tyAITtLLKTGt---~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLs 403 (898)
T COG5240 337 -------KVSVCNKEVESLISDENRTIS---TYAITTLLKTGT---EETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLS 403 (898)
T ss_pred -------eeeecChhHHHHhhcccccch---HHHHHHHHHcCc---hhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHH
Confidence 223455555555 56677664 455555554322 2345556655555555432223447788888885
Q ss_pred hccccCcccHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHHHHhcchHHHhhHHHHHHHHHhhhcCCC
Q 002658 235 QVGAIAPQSLEPLLQSIHECLGS-TDWATRKAAADALSALALHSSNLVIDGATSTLTVLEACRFDKI 300 (896)
Q Consensus 235 ~vga~~~pyle~lLp~L~e~Lsd-dDW~lRKaA~EaLgsLA~avGe~L~Py~~~~I~~LE~~RfDKv 300 (896)
- .|+.--..++..|...|.+ ....-++.++|+|..+....|+-=.--+..+-.++|.|.|.++
T Consensus 404 l---~Fp~k~~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skEraLe~LC~fIEDcey~~I 467 (898)
T COG5240 404 L---LFPSKKLSYLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKERALEVLCTFIEDCEYHQI 467 (898)
T ss_pred h---hCcHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHhhcchhHH
Confidence 3 4555555666666665544 4678888999999988888874322233444455566666655
No 108
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=95.94 E-value=0.06 Score=54.55 Aligned_cols=141 Identities=11% Similarity=0.146 Sum_probs=86.6
Q ss_pred HHHHHHHHhhhc-CCCChhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhhcC-----CChHHHHHHHHHHHHHHHH
Q 002658 77 LPMLLNCLYESS-NDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKD-----SDSGMKEACRDSIGSLSKL 150 (896)
Q Consensus 77 Lp~fLs~L~es~-ss~k~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrLkD-----pDs~VR~Ac~~aLG~LA~~ 150 (896)
+|.+|..|..-+ .+..+..|++++++||.+.. +-||.-|. +.+.+.+ ......+... +...
T Consensus 8 yP~LL~~L~~iLk~e~s~~iR~E~lr~lGilGA-----LDP~~~k~---~~~~~~~~~~~~~~~~~~~~~l-----~~~~ 74 (160)
T PF11865_consen 8 YPELLDILLNILKTEQSQSIRREALRVLGILGA-----LDPYKHKS---IQKSLDSKSSENSNDESTDISL-----PMMG 74 (160)
T ss_pred hHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccc-----cCcHHHhc---ccccCCccccccccccchhhHH-----hhcc
Confidence 555555555443 23459999999999998854 56666552 2222221 1112222211 1111
Q ss_pred HhcccccCCchhH-hhhHHHHHHHHhcCC-HhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchhhHHHHHH
Q 002658 151 YLNGKEENNGTVV-GLFVKPLFEAMMEQN-KGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLP 228 (896)
Q Consensus 151 li~~~~e~~~~~~-~~lL~pL~eaL~Eqn-k~VQ~gAasALAkIIE~a~d~~~~yL~~LlPRL~kLLks~s~kaK~alL~ 228 (896)
+ .+ ..++++ ..++..|+..|.|+. .....++..|+-.++...+....+||++++|.++..+++-....++.++.
T Consensus 75 ~-~~---~~ee~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~ 150 (160)
T PF11865_consen 75 I-SP---SSEEYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQ 150 (160)
T ss_pred C-CC---chHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHH
Confidence 1 00 112333 335577777776653 34445788888888877777778999999999999999755577887777
Q ss_pred HHHHHH
Q 002658 229 VVGSLS 234 (896)
Q Consensus 229 aIgSLA 234 (896)
-++.++
T Consensus 151 qL~~lv 156 (160)
T PF11865_consen 151 QLADLV 156 (160)
T ss_pred HHHHHH
Confidence 777765
No 109
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=95.89 E-value=1.1 Score=48.15 Aligned_cols=194 Identities=16% Similarity=0.145 Sum_probs=118.9
Q ss_pred HHcCCChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHh
Q 002658 49 LSKLADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKR 128 (896)
Q Consensus 49 L~KLsDRDT~k~Aa~eLD~La~~L~pd~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~Ilrr 128 (896)
+.+-.+...+...+..|-.++.+=. ...++++..|..-....+...+--+++++-.+.. ..+..-|+|..++-....+
T Consensus 9 l~~~~~~~~~~~~L~~L~~l~~~~~-~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~-~~~r~f~~L~~~L~~~~~r 86 (234)
T PF12530_consen 9 LGKISDPELQLPLLEALPSLACHKN-VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWK-ANDRHFPFLQPLLLLLILR 86 (234)
T ss_pred hcCCCChHHHHHHHHHHHHHhccCc-cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHH-hCchHHHHHHHHHHHHHhh
Confidence 5555677777777777777776322 3466777766655555445455567777766666 3344458887777664433
Q ss_pred ----hcCCCh--HHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHH-hcCCHhHHHHHHHHHHHHHHhcCCCCc
Q 002658 129 ----LKDSDS--GMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAM-MEQNKGVQSGAAMCMAKMVECASDPPV 201 (896)
Q Consensus 129 ----LkDpDs--~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL-~Eqnk~VQ~gAasALAkIIE~a~d~~~ 201 (896)
..+.+. .+.-++..++..++... + ..+..+++.|...| .+.++.+|.-|..+|+.+|+..--.+.
T Consensus 87 ~~~~~~~~~~~~~~~i~~a~s~~~ic~~~---p-----~~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~vvd~~ 158 (234)
T PF12530_consen 87 IPSSFSSKDEFWECLISIAASIRDICCSR---P-----DHGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAEVVDFY 158 (234)
T ss_pred cccccCCCcchHHHHHHHHHHHHHHHHhC---h-----hhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhccHH
Confidence 222232 22333344555555544 1 35888999999999 788999999999999999975322222
Q ss_pred hhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHh---cc----ccCcccHHHHHHHHHHhhCCCC
Q 002658 202 VAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQ---VG----AIAPQSLEPLLQSIHECLGSTD 259 (896)
Q Consensus 202 ~yL~~LlPRL~kLLks~s~kaK~alL~aIgSLA~---vg----a~~~pyle~lLp~L~e~LsddD 259 (896)
....-|.++| ....++.++..+.++.. -+ +........++..|-++....+
T Consensus 159 s~w~vl~~~l-------~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~~ 216 (234)
T PF12530_consen 159 SAWKVLQKKL-------SLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSSD 216 (234)
T ss_pred HHHHHHHHhc-------CCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhccccc
Confidence 3344455555 33345566666666642 11 2345556677777778777765
No 110
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=95.87 E-value=0.071 Score=60.28 Aligned_cols=133 Identities=20% Similarity=0.258 Sum_probs=89.4
Q ss_pred hHhhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCC-------chhhHHHHHHHHHHHH
Q 002658 162 VVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQ-------NFMAKASLLPVVGSLS 234 (896)
Q Consensus 162 ~~~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~a~d~~~~yL~~LlPRL~kLLks~-------s~kaK~alL~aIgSLA 234 (896)
....|+.-+.+++...+......|..+|. . .+.|+.|+|+|+..+... +...-..++.++.++.
T Consensus 175 Elq~yf~~It~a~~~~~~~~r~~aL~sL~-------t--D~gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl 245 (343)
T cd08050 175 ELQLYFEEITEALVGSNEEKRREALQSLR-------T--DPGLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALL 245 (343)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHhc-------c--CCCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHh
Confidence 36677788888886666655554443321 1 135677888888777543 1222224555666665
Q ss_pred hccc-cCcccHHHHHHHHHHhh----------CCCCHHHHHHHHHHHHHHHHhcchHHHhhHHHHHHHHHhhhcCCChhh
Q 002658 235 QVGA-IAPQSLEPLLQSIHECL----------GSTDWATRKAAADALSALALHSSNLVIDGATSTLTVLEACRFDKIKPV 303 (896)
Q Consensus 235 ~vga-~~~pyle~lLp~L~e~L----------sddDW~lRKaA~EaLgsLA~avGe~L~Py~~~~I~~LE~~RfDKvKpV 303 (896)
.-.. ...+|+-.+||+++.|+ .++.|.+|.-|+.+|+.|+...+....-...++++.+...-+|..++.
T Consensus 246 ~N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~ 325 (343)
T cd08050 246 DNPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPL 325 (343)
T ss_pred cCCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCc
Confidence 4322 34899999999999986 235699999999999999999995544445667777777777877754
No 111
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.86 E-value=0.85 Score=57.23 Aligned_cols=224 Identities=13% Similarity=0.118 Sum_probs=142.9
Q ss_pred HHHHHHHHHcC--CChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccc-----
Q 002658 42 KQKILTSLSKL--ADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELT----- 114 (896)
Q Consensus 42 k~rll~~L~KL--sDRDT~k~Aa~eLD~La~~L~pd~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I----- 114 (896)
.+.+++||... +|.+.|+.|=+.|.++-. .| .|...|..|.- ..+..-++|.+|..-|++.+..++...
T Consensus 3 ~~~l~~~~~~T~d~d~~~R~~AE~~L~q~~K--~p-gFv~~lLqIi~-~d~~~l~vrqaaaIYlKN~I~~~W~~~~~~g~ 78 (1010)
T KOG1991|consen 3 LQSLLQIFRATIDSDAKERKAAEQQLNQLEK--QP-GFVSSLLQIIM-DDGVPLPVRQAAAIYLKNKITKSWSSHEAPGR 78 (1010)
T ss_pred hHHHHHHHHHhcCCChHHHHHHHHHHHHhhc--CC-cHHHHHHHHHH-ccCCchhHHHHHHHHHHHHHHhcCCccCCCCC
Confidence 36788888776 677899999988888776 34 33333333332 223456689999999999998877544
Q ss_pred -----hhhHHHHHHHHHHhhcCCChHHHHHHHHHH-HHHHHHHhcccccCCchhHhhhHHHHHHHHhcCCHhHHHHHHHH
Q 002658 115 -----STHVTKIISHIVKRLKDSDSGMKEACRDSI-GSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMC 188 (896)
Q Consensus 115 -----~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aL-G~LA~~li~~~~e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasA 188 (896)
..--+.|...|+..+-.....+|-+-..++ +.|.... .+.|+.+++..-..|..++.+.--||..|
T Consensus 79 ~~~I~e~dk~~irenIl~~iv~~p~~iRvql~~~l~~Ii~~D~--------p~~Wp~l~d~i~~~Lqs~~~~~vy~aLl~ 150 (1010)
T KOG1991|consen 79 PFGIPEEDKAVIRENILETIVQVPELIRVQLTACLNTIIKADY--------PEQWPGLLDKIKNLLQSQDANHVYGALLC 150 (1010)
T ss_pred cCCCChHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhcCC--------cccchhHHHHHHHHhcCcchhhHHHHHHH
Confidence 112344555666665555777887766666 3333333 15699999999999999999999999999
Q ss_pred HHHHHHhcC-------CCCc----hhHHHHHHHHHHHhcCCchhhHHHHHHHHHHH----Hhcc--------ccCcccHH
Q 002658 189 MAKMVECAS-------DPPV----VAFQKLCARICKLLSNQNFMAKASLLPVVGSL----SQVG--------AIAPQSLE 245 (896)
Q Consensus 189 LAkIIE~a~-------d~~~----~yL~~LlPRL~kLLks~s~kaK~alL~aIgSL----A~vg--------a~~~pyle 245 (896)
|..++..-+ .++. .+++.|+.++..+|...+++.-. ++..|-.+ +.-. ..|.+.+.
T Consensus 151 l~qL~k~ye~k~~eeR~~l~~~v~~~fP~il~~~~~ll~~~s~~s~e-l~klIlKifks~~~~~LP~~L~~~~~f~~W~~ 229 (1010)
T KOG1991|consen 151 LYQLFKTYEWKKDEERQPLGEAVEELFPDILQIFNGLLSQESYQSVE-LQKLILKIFKSLIYYELPLELSAPETFTSWME 229 (1010)
T ss_pred HHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhhccccchHHHH-HHHHHHHHHHHHHHHhCCHHhhCchhHHHHHH
Confidence 999997641 1111 24555556666666666776322 22233332 2111 23444444
Q ss_pred HHHHHHHHhhC------C-------CCHHHHHHHHHHHHHHHHhcc
Q 002658 246 PLLQSIHECLG------S-------TDWATRKAAADALSALALHSS 278 (896)
Q Consensus 246 ~lLp~L~e~Ls------d-------dDW~lRKaA~EaLgsLA~avG 278 (896)
.++..+..-+. | .=|..+|=|+-.|..+-...|
T Consensus 230 l~l~i~~rpvP~E~l~~d~e~R~~~~wwK~KKWa~~~L~Rlf~Ryg 275 (1010)
T KOG1991|consen 230 LFLSILNRPVPVEVLSLDPEDRSSWPWWKCKKWALHILNRLFERYG 275 (1010)
T ss_pred HHHHHHcCCCChhcccCChhhcccccchhhHHHHHHHHHHHHHHhC
Confidence 44444332211 1 128899999999999998888
No 112
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.74 E-value=1 Score=55.19 Aligned_cols=198 Identities=13% Similarity=0.133 Sum_probs=123.2
Q ss_pred CCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhhcCCChHHHHHHHH--------HHH
Q 002658 74 QESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRD--------SIG 145 (896)
Q Consensus 74 pd~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrLkDpDs~VR~Ac~~--------aLG 145 (896)
|+.+.+|++.|.+.+.+..++|||-|+++++.|=.- .+.+.|--|.++...+-+=+||. .-|+|-.- ++.
T Consensus 129 ~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~-~~~L~pDapeLi~~fL~~e~Dps-CkRNAFi~L~~~D~ErAl~ 206 (948)
T KOG1058|consen 129 PELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKN-FEHLIPDAPELIESFLLTEQDPS-CKRNAFLMLFTTDPERALN 206 (948)
T ss_pred HHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhh-hhhhcCChHHHHHHHHHhccCch-hHHHHHHHHHhcCHHHHHH
Confidence 667999999999999999999999999999988775 45566667777877776666664 12222111 111
Q ss_pred HHHHHHhc------------------ccccCCchhHhhhHHHHHHHHhc-----------------CCHhHHHHHHHHHH
Q 002658 146 SLSKLYLN------------------GKEENNGTVVGLFVKPLFEAMME-----------------QNKGVQSGAAMCMA 190 (896)
Q Consensus 146 ~LA~~li~------------------~~~e~~~~~~~~lL~pL~eaL~E-----------------qnk~VQ~gAasALA 190 (896)
-|...+.+ .+. .....-..+++.++..|.. ++|.+-.+|+.|+-
T Consensus 207 Yl~~~idqi~~~~~~LqlViVE~Irkv~~-~~p~~~~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~p~alk~Aa~~~i 285 (948)
T KOG1058|consen 207 YLLSNIDQIPSFNDSLQLVIVELIRKVCL-ANPAEKARYIRCIYNLLSSTSSAVIFEAAGTLVTLSNDPTALKAAASTYI 285 (948)
T ss_pred HHHhhHhhccCccHHHHHHHHHHHHHHHh-cCHHHhhHHHHHHHHHHhcCCchhhhhhcceEEEccCCHHHHHHHHHHHH
Confidence 11111110 000 0012233455666666632 46778888999888
Q ss_pred HHHHhcCC----CCc------------hhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhccccCcccHHHHHHHHHHh
Q 002658 191 KMVECASD----PPV------------VAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHEC 254 (896)
Q Consensus 191 kIIE~a~d----~~~------------~yL~~LlPRL~kLLks~s~kaK~alL~aIgSLA~vga~~~pyle~lLp~L~e~ 254 (896)
.+++...+ ++. ..+..|+--++.+|.+++..+|.-+|+.+--++. ...++.++..|..-
T Consensus 286 ~l~~kesdnnvklIvldrl~~l~~~~~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvs-----srNvediv~~Lkke 360 (948)
T KOG1058|consen 286 DLLVKESDNNVKLIVLDRLSELKALHEKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVS-----SRNVEDIVQFLKKE 360 (948)
T ss_pred HHHHhccCcchhhhhHHHHHHHhhhhHHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhh-----hccHHHHHHHHHHH
Confidence 88876422 111 1255667777788888888777766666555432 23566666666554
Q ss_pred hC-------CCCHHHHHHHHHHHHHHHHhcch
Q 002658 255 LG-------STDWATRKAAADALSALALHSSN 279 (896)
Q Consensus 255 Ls-------ddDW~lRKaA~EaLgsLA~avGe 279 (896)
+. ++.-.-|..-+++|.+.|...++
T Consensus 361 ~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~ 392 (948)
T KOG1058|consen 361 VMKTHNEESDDNGKYRQLLIKTIHACAVKFPE 392 (948)
T ss_pred HHhccccccccchHHHHHHHHHHHHHhhcChH
Confidence 32 23455688888888888877765
No 113
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.67 E-value=0.39 Score=58.82 Aligned_cols=65 Identities=23% Similarity=0.242 Sum_probs=47.2
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcchHHHhhHHHHHHHHHhhhcCCChhhHHHHHHHHHHHH
Q 002658 247 LLQSIHECLGSTDWATRKAAADALSALALHSSNLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQLWK 315 (896)
Q Consensus 247 lLp~L~e~LsddDW~lRKaA~EaLgsLA~avGe~L~Py~~~~I~~LE~~RfDKvKpVRDaA~eALe~WK 315 (896)
.+..+.+.+.-++.-+|.+|..||+.++ +-.+.+. +++.-.|..|.+|++..|||.|.-+|....
T Consensus 467 yir~iyNRviLEn~ivRaaAv~alaKfg-~~~~~l~---~sI~vllkRc~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 467 YIRFIYNRVILENAIVRAAAVSALAKFG-AQDVVLL---PSILVLLKRCLNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred hhHHHhhhhhhhhhhhHHHHHHHHHHHh-cCCCCcc---ccHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence 3334444444567789999999999988 2223333 566778889999999999999877777765
No 114
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.65 E-value=0.85 Score=59.50 Aligned_cols=215 Identities=18% Similarity=0.143 Sum_probs=144.4
Q ss_pred HHHHHHHHHHHHcCC--ChhHHHHHHHHHHHHHhcCCCCCHHHHHHH---Hhhh-cCCCChhhHHHHHHHHHHHHHHhcc
Q 002658 39 VEMKQKILTSLSKLA--DRDTHQIAIEDLEKTIQTLSQESLPMLLNC---LYES-SNDPKPAVKKESVRLLALVCELHSE 112 (896)
Q Consensus 39 ~~Lk~rll~~L~KLs--DRDT~k~Aa~eLD~La~~L~pd~Lp~fLs~---L~es-~ss~k~~vRKeAIllLG~IAeg~~d 112 (896)
.++..++-.++.|++ |-.|.--|+++|-.++...+-+.+-.+|++ ++.. .-+.+..+|......+..+...+.+
T Consensus 37 ~~~dsel~~I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk 116 (1312)
T KOG0803|consen 37 LELDSELDIIVKKLLKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKK 116 (1312)
T ss_pred hccCHHHHHHHHHHhccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHH
Confidence 448889999999994 666999999999999987654443333333 3333 4678899999999999999999999
Q ss_pred cchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHH------------------
Q 002658 113 LTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAM------------------ 174 (896)
Q Consensus 113 ~I~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL------------------ 174 (896)
.++|||..++|.++-...|.+..|..++-.+.......--+ ...|..+-+.++..+
T Consensus 117 ~lsp~LK~li~~wl~~~~d~~~~vs~aa~~sf~~~f~~ek~------~~v~~~c~~~i~~~~~~~~~~~~~~slSd~~~~ 190 (1312)
T KOG0803|consen 117 KLSPFLKSLIPPWLGGQFDLDYPVSEAAKASFKDGFAEEKD------RHVWFKCDPEIFYLVTEILVKETPDSLSDLRTL 190 (1312)
T ss_pred HhhHHHHhhhhhhhheecccchHHHHHHHHHHHhhcChhhh------HHHHHHhhHHHHHHHHHHHhccCccccchhhhc
Confidence 99999999999999999999988888887765443321100 011111111111111
Q ss_pred -----hcCCHhHHHHHHHHHHHHHHh-cCCCCch---h-HH--HHHHHHHHHhcCCchhhHHHHHHHHHHHHh-cccc-C
Q 002658 175 -----MEQNKGVQSGAAMCMAKMVEC-ASDPPVV---A-FQ--KLCARICKLLSNQNFMAKASLLPVVGSLSQ-VGAI-A 240 (896)
Q Consensus 175 -----~Eqnk~VQ~gAasALAkIIE~-a~d~~~~---y-L~--~LlPRL~kLLks~s~kaK~alL~aIgSLA~-vga~-~ 240 (896)
....++|-..+..+|.++... ..+.... + +. .--..+-++++++...+|.++++++-++.+ +-.. .
T Consensus 191 s~Ee~E~k~~Rvi~ssLl~l~~l~~~~~~~~el~~~~~~~kt~~s~~~fWk~~~~k~~~i~~~~~ell~~l~~~i~~~~~ 270 (1312)
T KOG0803|consen 191 SSEELESKYQRVISSSLLLLLKLFKITGDEEELHSLSEKEKTFLSSEKFWKLLKSKSPSIKVALLELLLSLIDDILNRVM 270 (1312)
T ss_pred chHHHHHhhHHHHHHHHHHHHHHHHHhCchHhhhhhhhhhhhhhhHHHHHHHhcCCCcchhHHHHHHHHHHHhhhHHhcc
Confidence 113466777788888888844 3222211 1 11 234677888899998999999999999875 2222 3
Q ss_pred cccHHHHHHHHHHhhCCCC
Q 002658 241 PQSLEPLLQSIHECLGSTD 259 (896)
Q Consensus 241 ~pyle~lLp~L~e~LsddD 259 (896)
++....+.+.+.....+.+
T Consensus 271 ~~~~~~l~~~~~~~~~~~d 289 (1312)
T KOG0803|consen 271 ESEKNYLKPVLLGSIDSLD 289 (1312)
T ss_pred hhhhhHhhHHHHccccccc
Confidence 4444455566666655555
No 115
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=95.64 E-value=0.18 Score=52.55 Aligned_cols=141 Identities=18% Similarity=0.164 Sum_probs=101.6
Q ss_pred HHHHHHHHHHHHHHHHHhcccccCCchhHhhhHH-----------HHHHHH-hcCCHhHHHHHHHHHHHHHHhc------
Q 002658 135 GMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVK-----------PLFEAM-MEQNKGVQSGAAMCMAKMVECA------ 196 (896)
Q Consensus 135 ~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~-----------pL~eaL-~Eqnk~VQ~gAasALAkIIE~a------ 196 (896)
.||.++..++..++..+-... --.+|+.|+| .|+..+ .|+++.|..+|+.+|+.++|+.
T Consensus 1 kvR~~Al~~L~al~k~~~~r~---l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~ 77 (182)
T PF13251_consen 1 KVRQAALQCLQALAKSTDKRS---LFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQ 77 (182)
T ss_pred ChhHHHHHHHHHHHHhcCCce---eHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHH
Confidence 389999999999999962211 1245666554 445555 6899999999999999999986
Q ss_pred -C--C----CCchh-------HHHHHHHHHHHhcCC-chhhHHHHHHHHHHHHhcc---ccCcccHHHHHHHHHHhhCCC
Q 002658 197 -S--D----PPVVA-------FQKLCARICKLLSNQ-NFMAKASLLPVVGSLSQVG---AIAPQSLEPLLQSIHECLGST 258 (896)
Q Consensus 197 -~--d----~~~~y-------L~~LlPRL~kLLks~-s~kaK~alL~aIgSLA~vg---a~~~pyle~lLp~L~e~Lsdd 258 (896)
. . -..++ +-.|=-.|+.+|.+. +..+-..++.|+..++.+- ..-..++..++..+..++.+.
T Consensus 78 Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~ 157 (182)
T PF13251_consen 78 AEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHR 157 (182)
T ss_pred HHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcC
Confidence 1 1 11111 333445566666653 5556668899999987543 233677888888889999999
Q ss_pred CHHHHHHHHHHHHHHHHhcc
Q 002658 259 DWATRKAAADALSALALHSS 278 (896)
Q Consensus 259 DW~lRKaA~EaLgsLA~avG 278 (896)
|..+|-++.-||+.+....+
T Consensus 158 d~~v~v~~l~~~~~l~s~~~ 177 (182)
T PF13251_consen 158 DPNVRVAALSCLGALLSVQP 177 (182)
T ss_pred CCcHHHHHHHHHHHHHcCCC
Confidence 99999999999999887654
No 116
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=95.60 E-value=0.098 Score=48.66 Aligned_cols=79 Identities=23% Similarity=0.284 Sum_probs=65.5
Q ss_pred hhhcCCCChhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHh
Q 002658 85 YESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVG 164 (896)
Q Consensus 85 ~es~ss~k~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~ 164 (896)
....+++.+++|-+++..|..+++... .....+++|+..++..|+|+|+-|--.|..+++.|+.... .
T Consensus 9 l~~L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p-----------~ 76 (92)
T PF10363_consen 9 LSDLNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHP-----------D 76 (92)
T ss_pred HHHccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHCh-----------H
Confidence 334567889999999999999999777 5556789999999999999999999999999999999982 2
Q ss_pred hhHHHHHHHHh
Q 002658 165 LFVKPLFEAMM 175 (896)
Q Consensus 165 ~lL~pL~eaL~ 175 (896)
.+++.|++.-.
T Consensus 77 ~vl~~L~~~y~ 87 (92)
T PF10363_consen 77 EVLPILLDEYA 87 (92)
T ss_pred HHHHHHHHHHh
Confidence 36666666553
No 117
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.60 E-value=1.1 Score=54.71 Aligned_cols=197 Identities=17% Similarity=0.189 Sum_probs=120.9
Q ss_pred HHHHHHHHhcC---CC--CCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhhcCCChHH
Q 002658 62 IEDLEKTIQTL---SQ--ESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGM 136 (896)
Q Consensus 62 a~eLD~La~~L---~p--d~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrLkDpDs~V 136 (896)
+.-|.+++..| ++ +.+..++.+|+....+.+-.||.-++.+|..+...-.+--.....+++..+..||.|-.|.|
T Consensus 63 l~fla~fv~sl~q~d~e~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~V 142 (892)
T KOG2025|consen 63 LSFLARFVESLPQLDKEEDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNV 142 (892)
T ss_pred HHHHHHHHHhhhccCchhhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchH
Confidence 33444555544 33 23788899999888888899999999999888873333334567888999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHH-hcCCHhHHHHHHHHHH-------HHHHhcCCCCch----hH
Q 002658 137 KEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAM-MEQNKGVQSGAAMCMA-------KMVECASDPPVV----AF 204 (896)
Q Consensus 137 R~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL-~Eqnk~VQ~gAasALA-------kIIE~a~d~~~~----yL 204 (896)
|-.|+.++.+|=..-.++ .. .+...|...+ .++++.|..+|.+|+. .++|-+.|.... ..
T Consensus 143 RiqAv~aLsrlQ~d~~de-------e~-~v~n~l~~liqnDpS~EVRRaaLsnI~vdnsTlp~IveRarDV~~anRrlvY 214 (892)
T KOG2025|consen 143 RIQAVLALSRLQGDPKDE-------EC-PVVNLLKDLIQNDPSDEVRRAALSNISVDNSTLPCIVERARDVSGANRRLVY 214 (892)
T ss_pred HHHHHHHHHHHhcCCCCC-------cc-cHHHHHHHHHhcCCcHHHHHHHHHhhccCcccchhHHHHhhhhhHHHHHHHH
Confidence 999999988775422111 12 2344444444 5889999999988764 566665543321 13
Q ss_pred HHHHHHH--------------HHHhcCCchhhHHHHHHHHHHHHhccccCcccHHHHHHHHHHhhCCC-CHHHHHHHHHH
Q 002658 205 QKLCARI--------------CKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGST-DWATRKAAADA 269 (896)
Q Consensus 205 ~~LlPRL--------------~kLLks~s~kaK~alL~aIgSLA~vga~~~pyle~lLp~L~e~Lsdd-DW~lRKaA~Ea 269 (896)
..++|++ ..-|++..+-+|.++.++|.+= ...+.+.=++-|++.|.-+ ...++-.|+++
T Consensus 215 ~r~lpkid~r~lsi~krv~LlewgLnDRe~sVk~A~~d~il~~------Wl~~~dgni~ElL~~ldvsnss~vavk~lea 288 (892)
T KOG2025|consen 215 ERCLPKIDLRSLSIDKRVLLLEWGLNDREFSVKGALVDAILSG------WLRFSDGNILELLERLDVSNSSEVAVKALEA 288 (892)
T ss_pred HHhhhhhhhhhhhHHHHHHHHHHhhhhhhhHHHHHHHHHHHHH------HhhhccccHHHHHHHhccccchHHHHHHHHH
Confidence 3344443 2334445666666666666551 0011112233333444433 23556666666
Q ss_pred HHH
Q 002658 270 LSA 272 (896)
Q Consensus 270 Lgs 272 (896)
|-.
T Consensus 289 lf~ 291 (892)
T KOG2025|consen 289 LFS 291 (892)
T ss_pred HHH
Confidence 555
No 118
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=95.57 E-value=0.28 Score=49.87 Aligned_cols=137 Identities=9% Similarity=0.078 Sum_probs=102.0
Q ss_pred chhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhc-CCHhHHHHHHHHHHHH
Q 002658 114 TSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMME-QNKGVQSGAAMCMAKM 192 (896)
Q Consensus 114 I~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~E-qnk~VQ~gAasALAkI 192 (896)
....+.+.+..|...|+++++.-|-+.+..++.++++.--+.+. ......+..|+..|.. ..+.+-+.|+.+|..+
T Consensus 19 ~~~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~---~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l 95 (165)
T PF08167_consen 19 SKSALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILL---SHGSQWLRALLSILEKPDPPSVLEAAIITLTRL 95 (165)
T ss_pred CHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHH---HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 35678999999999999999999999999999988886211221 2344566667777744 4567889999999999
Q ss_pred HHhcCC-------CCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcc-ccCcccHHHHHHHHHHhh
Q 002658 193 VECASD-------PPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVG-AIAPQSLEPLLQSIHECL 255 (896)
Q Consensus 193 IE~a~d-------~~~~yL~~LlPRL~kLLks~s~kaK~alL~aIgSLA~vg-a~~~pyle~lLp~L~e~L 255 (896)
++.... ...+.++.+++-++++++. ......+++++..+...- ..|.||...+-..+..++
T Consensus 96 ~~~~~~~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~ptt~rp~~~ki~~~l~~ll 164 (165)
T PF08167_consen 96 FDLIRGKPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPTTFRPFANKIESALLSLL 164 (165)
T ss_pred HHHhcCCCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCccccchHHHHHHHHHHHh
Confidence 998622 2246788888888888885 345567888998887643 678888888777776654
No 119
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=95.56 E-value=0.49 Score=56.49 Aligned_cols=165 Identities=10% Similarity=0.098 Sum_probs=98.8
Q ss_pred HHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHH-hccc-------chhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHH
Q 002658 77 LPMLLNCLYESSNDPKPAVKKESVRLLALVCEL-HSEL-------TSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLS 148 (896)
Q Consensus 77 Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg-~~d~-------I~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA 148 (896)
+..++..+........+..|..|++++|.++.. |.+. +..+++++...+-....+.+...+..+..+||.+.
T Consensus 395 l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g 474 (574)
T smart00638 395 LKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAG 474 (574)
T ss_pred HHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccC
Confidence 444444444333345678999999999999984 4333 13466666666666666677778888888888554
Q ss_pred HHHhcccccCCchhHhhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCC--chhhHHHH
Q 002658 149 KLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQ--NFMAKASL 226 (896)
Q Consensus 149 ~~li~~~~e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~a~d~~~~yL~~LlPRL~kLLks~--s~kaK~al 226 (896)
..- .-.++.+++..=......++.+|+.||.++.+..+.. +-+.|++++.+. +..+|.++
T Consensus 475 ~~~-----------~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~-------v~~~l~~i~~n~~e~~EvRiaA 536 (574)
T smart00638 475 HPS-----------SIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRK-------VQEVLLPIYLNRAEPPEVRMAA 536 (574)
T ss_pred Chh-----------HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchH-------HHHHHHHHHcCCCCChHHHHHH
Confidence 333 1123333333112346678999999999988755443 566777777764 55677655
Q ss_pred HHHHHHHHhccccCcccHHHHHHHHHHhh-CCCCHHHHHHHH
Q 002658 227 LPVVGSLSQVGAIAPQSLEPLLQSIHECL-GSTDWATRKAAA 267 (896)
Q Consensus 227 L~aIgSLA~vga~~~pyle~lLp~L~e~L-sddDW~lRKaA~ 267 (896)
+.++-.. .|-. ..|..+.+.+ .+.+.+++..+.
T Consensus 537 ~~~lm~t-------~P~~-~~l~~ia~~l~~E~~~QV~sfv~ 570 (574)
T smart00638 537 VLVLMET-------KPSV-ALLQRIAELLNKEPNLQVASFVY 570 (574)
T ss_pred HHHHHhc-------CCCH-HHHHHHHHHHhhcCcHHHHHHhH
Confidence 5443321 1222 2333333433 445677765544
No 120
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.54 E-value=2.3 Score=52.13 Aligned_cols=243 Identities=12% Similarity=0.144 Sum_probs=129.0
Q ss_pred HHHHHHHHHHHHcCCChhHHH--HHHHHHHHHHhc-C---CCCC---HHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHH
Q 002658 39 VEMKQKILTSLSKLADRDTHQ--IAIEDLEKTIQT-L---SQES---LPMLLNCLYESSNDPKPAVKKESVRLLALVCEL 109 (896)
Q Consensus 39 ~~Lk~rll~~L~KLsDRDT~k--~Aa~eLD~La~~-L---~pd~---Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg 109 (896)
+.|..+|+.-|+.+-.+ |.+ .-.+.+..++.. + -++. +...+.-|.....+.++..|--++++++-|+..
T Consensus 251 PRLgKKLieplt~li~s-T~AmSLlYECvNTVVa~s~s~g~~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~kt 329 (877)
T KOG1059|consen 251 PRLGKKLIEPITELMES-TVAMSLLYECVNTVVAVSMSSGMSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKT 329 (877)
T ss_pred chhhhhhhhHHHHHHHh-hHHHHHHHHHHHHheeehhccCCCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhh
Confidence 56777777777777422 322 233344444432 1 1223 444444455556778888999999999999999
Q ss_pred hcccchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhcCCHhHHHHHHHHH
Q 002658 110 HSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCM 189 (896)
Q Consensus 110 ~~d~I~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasAL 189 (896)
|+..+..|. ..|+++|.|.|..||--|.+.+-.++.. +.+.++++.|+..+.......- --.-|
T Consensus 330 Hp~~Vqa~k----dlIlrcL~DkD~SIRlrALdLl~gmVsk----------kNl~eIVk~LM~~~~~ae~t~y--rdell 393 (877)
T KOG1059|consen 330 HPKAVQAHK----DLILRCLDDKDESIRLRALDLLYGMVSK----------KNLMEIVKTLMKHVEKAEGTNY--RDELL 393 (877)
T ss_pred CHHHHHHhH----HHHHHHhccCCchhHHHHHHHHHHHhhh----------hhHHHHHHHHHHHHHhccchhH--HHHHH
Confidence 999998876 5678999999999999888876554432 3367788888887732221000 00112
Q ss_pred HHHHHhc---CCCCchhHHHHHHHHHHHhcCCchh----hHHHHHHHHHHHHhccccCcccHHHHHHHHHH-hhCCCCHH
Q 002658 190 AKMVECA---SDPPVVAFQKLCARICKLLSNQNFM----AKASLLPVVGSLSQVGAIAPQSLEPLLQSIHE-CLGSTDWA 261 (896)
Q Consensus 190 AkIIE~a---~d~~~~yL~~LlPRL~kLLks~s~k----aK~alL~aIgSLA~vga~~~pyle~lLp~L~e-~LsddDW~ 261 (896)
.++|+-+ ......-++=.+--|..+.+=++.. +-+.+++.- +.| ....++.-..|-.|+. .+...+.+
T Consensus 394 ~~II~iCS~snY~~ItdFEWYlsVlveLa~l~~~~~G~~I~eQi~Dv~---iRV-~~iR~fsV~~m~~Ll~~~~~~~s~q 469 (877)
T KOG1059|consen 394 TRIISICSQSNYQYITDFEWYLSVLVELARLEGTRHGSLIAEQIIDVA---IRV-PSIRPFSVSQMSALLDDPLLAGSAQ 469 (877)
T ss_pred HHHHHHhhhhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHh---eec-hhhhHhHHHHHHHHHhchhhccchh
Confidence 3333322 1111110111112222222211111 111111110 111 1122222222222222 22233556
Q ss_pred HHHHHHHHHHHHHHhcchH--HHhhHHHHHHHHHhhhcCCChh
Q 002658 262 TRKAAADALSALALHSSNL--VIDGATSTLTVLEACRFDKIKP 302 (896)
Q Consensus 262 lRKaA~EaLgsLA~avGe~--L~Py~~~~I~~LE~~RfDKvKp 302 (896)
.+..-|+.|.+.|=..|++ |...-..++++|..-++|..++
T Consensus 470 ~n~~l~eVL~AaaWi~GEyse~ven~~~~leamlrpr~~~lp~ 512 (877)
T KOG1059|consen 470 INSQLCEVLYAAAWILGEYSEFVENPNDTLEAMLRPRSDLLPG 512 (877)
T ss_pred hccchhHHHHHHHHHHHHHHHHhhCHHHHHHHHhcCccccCch
Confidence 6777788888888888854 2233466777777777766543
No 121
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=95.52 E-value=1.8 Score=49.15 Aligned_cols=212 Identities=12% Similarity=0.168 Sum_probs=130.4
Q ss_pred HHHhhhcCCCChhhHHHHHHHHHHHHHHhccc--------chhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhc
Q 002658 82 NCLYESSNDPKPAVKKESVRLLALVCELHSEL--------TSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLN 153 (896)
Q Consensus 82 s~L~es~ss~k~~vRKeAIllLG~IAeg~~d~--------I~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~ 153 (896)
..|...+...+...||.+..+++++.+...+. +..|.|.|+..++++-.+|+..+ ..|.+.+.+++
T Consensus 79 ~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial------~~g~mlRec~k 152 (335)
T PF08569_consen 79 YLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIAL------NCGDMLRECIK 152 (335)
T ss_dssp HHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHH------HHHHHHHHHTT
T ss_pred HHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccc------hHHHHHHHHHh
Confidence 33444445677889999999999998876433 33344899999999999998322 23333333333
Q ss_pred ccccCCchhHhhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCchh----HHHHHHHHHHHhcCCchhhHHHHHHH
Q 002658 154 GKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVA----FQKLCARICKLLSNQNFMAKASLLPV 229 (896)
Q Consensus 154 ~~~e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~a~d~~~~y----L~~LlPRL~kLLks~s~kaK~alL~a 229 (896)
...-..--.....+-.+|+.+..++=.|..-|+..+..+.-.-+....+| ++.....+.++|.+.+|-+|-..|.+
T Consensus 153 ~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkL 232 (335)
T PF08569_consen 153 HESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKL 232 (335)
T ss_dssp SHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHH
T ss_pred hHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHH
Confidence 10000000011233347777777777888778887777765433333344 55677889999999999999999999
Q ss_pred HHHHHh--cc-ccCcccHH--HHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcc--h----HHHhhHHHHHHHHHhhhcC
Q 002658 230 VGSLSQ--VG-AIAPQSLE--PLLQSIHECLGSTDWATRKAAADALSALALHSS--N----LVIDGATSTLTVLEACRFD 298 (896)
Q Consensus 230 IgSLA~--vg-a~~~pyle--~lLp~L~e~LsddDW~lRKaA~EaLgsLA~avG--e----~L~Py~~~~I~~LE~~RfD 298 (896)
+|-+.- .. ..+.-|+. ..|-.+...|.+....++-.|...+-.....-. + .+..-.+.+|++|.....|
T Consensus 233 L~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K~~~I~~iL~~Nr~kLl~fl~~f~~~ 312 (335)
T PF08569_consen 233 LGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNKPPPIVDILIKNREKLLRFLKDFHTD 312 (335)
T ss_dssp HHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-BHHHHHHHHHTHHHHHHHHHTTTTT
T ss_pred HHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHhCCCC
Confidence 999962 22 22233332 334455678899999999888888766544322 2 2333357889999888888
Q ss_pred C
Q 002658 299 K 299 (896)
Q Consensus 299 K 299 (896)
+
T Consensus 313 ~ 313 (335)
T PF08569_consen 313 R 313 (335)
T ss_dssp -
T ss_pred C
Confidence 7
No 122
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.48 E-value=0.58 Score=55.00 Aligned_cols=57 Identities=23% Similarity=0.237 Sum_probs=51.5
Q ss_pred HHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhhcCCC
Q 002658 77 LPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSD 133 (896)
Q Consensus 77 Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrLkDpD 133 (896)
+..++-.+.....+++...|..|++.||+.++++++.+..|-++|+-.|+++|-|++
T Consensus 256 L~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~ 312 (533)
T KOG2032|consen 256 LGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDL 312 (533)
T ss_pred HHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCC
Confidence 666777777777788889999999999999999999999999999999999999986
No 123
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.47 E-value=2.4 Score=51.91 Aligned_cols=200 Identities=14% Similarity=0.163 Sum_probs=123.2
Q ss_pred HHHHHHHHHHHhccc--chhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhc
Q 002658 99 SVRLLALVCELHSEL--TSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMME 176 (896)
Q Consensus 99 AIllLG~IAeg~~d~--I~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~E 176 (896)
.+..++..++..++. -...+.+++-+|+|+..-++-.||--||..|..++..... . .+..+..+...|...|-+
T Consensus 62 Il~fla~fv~sl~q~d~e~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~e-i---dd~vfn~l~e~l~~Rl~D 137 (892)
T KOG2025|consen 62 ILSFLARFVESLPQLDKEEDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAE-I---DDDVFNKLNEKLLIRLKD 137 (892)
T ss_pred HHHHHHHHHHhhhccCchhhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccc-c---CHHHHHHHHHHHHHHHhc
Confidence 444455555544433 2457889999999999999999999999999999885522 1 236678888888888888
Q ss_pred CCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHh-cCCchhhHHHHHHHHHH-------HH----hcc-ccCc--
Q 002658 177 QNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLL-SNQNFMAKASLLPVVGS-------LS----QVG-AIAP-- 241 (896)
Q Consensus 177 qnk~VQ~gAasALAkIIE~a~d~~~~yL~~LlPRL~kLL-ks~s~kaK~alL~aIgS-------LA----~vg-a~~~-- 241 (896)
..|.|..-|..||.++-++..+..-+. ..-+..++ ++|+..+|-++|.+|.- +. .+. +.-.
T Consensus 138 rep~VRiqAv~aLsrlQ~d~~dee~~v----~n~l~~liqnDpS~EVRRaaLsnI~vdnsTlp~IveRarDV~~anRrlv 213 (892)
T KOG2025|consen 138 REPNVRIQAVLALSRLQGDPKDEECPV----VNLLKDLIQNDPSDEVRRAALSNISVDNSTLPCIVERARDVSGANRRLV 213 (892)
T ss_pred cCchHHHHHHHHHHHHhcCCCCCcccH----HHHHHHHHhcCCcHHHHHHHHHhhccCcccchhHHHHhhhhhHHHHHHH
Confidence 889999889999999997654443333 33334444 45788888887776542 11 000 0000
Q ss_pred ------------ccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcchHHHhhHHHHHHHHHhhhcCCChhhHHHHHH
Q 002658 242 ------------QSLEPLLQSIHECLGSTDWATRKAAADALSALALHSSNLVIDGATSTLTVLEACRFDKIKPVRDSMNE 309 (896)
Q Consensus 242 ------------pyle~lLp~L~e~LsddDW~lRKaA~EaLgsLA~avGe~L~Py~~~~I~~LE~~RfDKvKpVRDaA~e 309 (896)
-.++..+..|...|.|.+..+|+++.++|.. +.+.-.-..+++.|+..---... +++..
T Consensus 214 Y~r~lpkid~r~lsi~krv~LlewgLnDRe~sVk~A~~d~il~------~Wl~~~dgni~ElL~~ldvsnss---~vavk 284 (892)
T KOG2025|consen 214 YERCLPKIDLRSLSIDKRVLLLEWGLNDREFSVKGALVDAILS------GWLRFSDGNILELLERLDVSNSS---EVAVK 284 (892)
T ss_pred HHHhhhhhhhhhhhHHHHHHHHHHhhhhhhhHHHHHHHHHHHH------HHhhhccccHHHHHHHhccccch---HHHHH
Confidence 0111222234445667777788777777652 22222235566666644333333 34455
Q ss_pred HHHHHH
Q 002658 310 ALQLWK 315 (896)
Q Consensus 310 ALe~WK 315 (896)
||+++-
T Consensus 285 ~lealf 290 (892)
T KOG2025|consen 285 ALEALF 290 (892)
T ss_pred HHHHHH
Confidence 555543
No 124
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.41 E-value=6 Score=49.68 Aligned_cols=265 Identities=14% Similarity=0.125 Sum_probs=155.2
Q ss_pred HHHHHHHHHHcC--C--ChhHHHHHHHHHHHHHhcCC--CCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccc
Q 002658 41 MKQKILTSLSKL--A--DRDTHQIAIEDLEKTIQTLS--QESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELT 114 (896)
Q Consensus 41 Lk~rll~~L~KL--s--DRDT~k~Aa~eLD~La~~L~--pd~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I 114 (896)
+-+++++..... + ..+..+.+.+.+..+..-|. |-.+++.|+.|.+.+.. +..-.+++.-|..+|+.|...+
T Consensus 505 ~i~rl~~~~asik~S~~n~ql~~Tss~~igs~s~~l~e~P~~ln~sl~~L~~~Lh~--sk~s~q~i~tl~tlC~~C~~~L 582 (982)
T KOG2022|consen 505 WIPRLFETSASIKLSAPNPQLLSTSSDLIGSLSNWLGEHPMYLNPSLPLLFQGLHN--SKESEQAISTLKTLCETCPESL 582 (982)
T ss_pred HHHHHHHhccccccccCChhHHHHHHHHHHHHHHHHhcCCcccCchHHHHHHHhcC--chHHHHHHHHHHHHHHhhhhhC
Confidence 455566555433 3 77888888999998887773 54599999999988753 3334578888999999999999
Q ss_pred hhhHHHHHHHHHHhhcCC--ChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHh---c---CCHh------
Q 002658 115 STHVTKIISHIVKRLKDS--DSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMM---E---QNKG------ 180 (896)
Q Consensus 115 ~P~LpkIL~~IlrrLkDp--Ds~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~---E---qnk~------ 180 (896)
.||+..++.++...|.-. ...+|-....+||-+...+ + .++..++...++.|++.-|. . +++.
T Consensus 583 ~py~d~~~a~~~e~l~~~~~~~S~~~klm~sIGyvls~~-~--pEe~~kyl~~lin~il~qle~~l~~~i~~~e~~l~~~ 659 (982)
T KOG2022|consen 583 DPYADQFSAVCYEVLNKSNAKDSDRLKLMKSIGYVLSRL-K--PEEIPKYLMKLINPILSQLEINLAPGIDDQENHLRIA 659 (982)
T ss_pred chHHHHHHHHHHHHhcccccCchHHHHHHHHHHHHHHhc-c--HHhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHH
Confidence 999999999888877553 3567888888888888877 3 33344666777777777772 1 1222
Q ss_pred HHHHHHHHHHHHHHhcC-----C------------CCchhHHHHHHHHHHHhcCCchhhHH-HHHHHHHHHHh-----cc
Q 002658 181 VQSGAAMCMAKMVECAS-----D------------PPVVAFQKLCARICKLLSNQNFMAKA-SLLPVVGSLSQ-----VG 237 (896)
Q Consensus 181 VQ~gAasALAkIIE~a~-----d------------~~~~yL~~LlPRL~kLLks~s~kaK~-alL~aIgSLA~-----vg 237 (896)
.|..+.++|..-.-... + .+...+.+++|-+-+++.- -.+. ..++++..+.. ++
T Consensus 660 ~~l~~iS~LftSL~~~~~~~d~d~~~~~~~~~qq~~il~v~~k~i~~~~kv~s~---~~~~s~vve~~C~i~~~~v~~~~ 736 (982)
T KOG2022|consen 660 FQLNTISALFTSLINKKDIIDTDQPEQREEPFQQFPILQVLQKAIPVFEKVLSM---WLGLSDVVEASCIIMVKGVRSLL 736 (982)
T ss_pred HHHHHHHHHHhccCCCCccccccchhhhccccccCCHHHHHHHHHHHHHHHHHH---HhcchhHHHHHHHHHHhcccccc
Confidence 33345555544332210 0 1112355666666666651 1111 23333333322 22
Q ss_pred ccC-cccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHh----------cchHHHhhHHHHHHHHHhhhcCCChhhHHH
Q 002658 238 AIA-PQSLEPLLQSIHECLGSTDWATRKAAADALSALALH----------SSNLVIDGATSTLTVLEACRFDKIKPVRDS 306 (896)
Q Consensus 238 a~~-~pyle~lLp~L~e~LsddDW~lRKaA~EaLgsLA~a----------vGe~L~Py~~~~I~~LE~~RfDKvKpVRDa 306 (896)
..| .|++..+++.+..+++..-- .+++...+++.+ ++..|...++..+.+++.--|-.+. |.
T Consensus 737 ~sF~~p~l~~l~~Fi~r~~~~~~a----~tl~l~~~~l~~~~~~~~~~~lv~~~~~~~~q~sl~lf~~~~f~n~~---Di 809 (982)
T KOG2022|consen 737 TSFPEPMLPSLCPFIVRFLTSCLA----VTLSLIAACLLAKSTVEQCKPLVGQDMANAFQQSLLLFEQHPFSNQP---DI 809 (982)
T ss_pred ccchhhhHHHHHHHHHHhccchHH----HHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHhccCCCCCc---hH
Confidence 335 66666666666665554221 112221111111 1123334456666677755555554 44
Q ss_pred HHHHH----HHHHHhccC
Q 002658 307 MNEAL----QLWKKIAGK 320 (896)
Q Consensus 307 A~eAL----e~WK~la~~ 320 (896)
+.+-+ +.||.+|+.
T Consensus 810 ~~~~~~~v~~ilkk~P~~ 827 (982)
T KOG2022|consen 810 YLQLIGFVRQILKKIPKF 827 (982)
T ss_pred HHHHHHHHHHHHHhCcCc
Confidence 44444 446666655
No 125
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.39 E-value=0.63 Score=57.39 Aligned_cols=256 Identities=13% Similarity=0.100 Sum_probs=155.8
Q ss_pred CChhHHHHHH-HHHHHHHhcCCCCCHHHHHHHHhhh------cCCCChhhHHHHHHHHHHHHHH-----hc----ccchh
Q 002658 53 ADRDTHQIAI-EDLEKTIQTLSQESLPMLLNCLYES------SNDPKPAVKKESVRLLALVCEL-----HS----ELTST 116 (896)
Q Consensus 53 sDRDT~k~Aa-~eLD~La~~L~pd~Lp~fLs~L~es------~ss~k~~vRKeAIllLG~IAeg-----~~----d~I~P 116 (896)
+|-|||+-|+ +-+.-+...+.....+.|..++... ..+.+|..+..++.++..++-- || ..+.+
T Consensus 373 sDvdTRRR~a~dlvrgL~~~fe~~vt~v~~~~v~~~l~~y~~nPS~nWk~kd~aiyL~talaik~~t~~~Gvtstn~lvd 452 (960)
T KOG1992|consen 373 SDVDTRRRAAIDLVRGLCKNFEGQVTGVFSSEVQRLLDQYSKNPSGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNELVD 452 (960)
T ss_pred CCcchhHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhccCCCccccccchhhhhhHHHHhhcchhhcceeecccccc
Confidence 6888877554 5555566666443344444443322 2477899899999999888754 22 12344
Q ss_pred hHHHHHHHHHHhhcCC----ChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhcCCHhHHHHHHHHHHHH
Q 002658 117 HVTKIISHIVKRLKDS----DSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKM 192 (896)
Q Consensus 117 ~LpkIL~~IlrrLkDp----Ds~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasALAkI 192 (896)
........|++-|.-| .|.++..+.+=+-.+=.++ +..+.-.++|.|+..|......|-.-||.|+.++
T Consensus 453 v~~Ff~~~ilp~L~s~~vn~~pilka~aIKy~~~FR~ql-------~~~~lm~~~p~li~~L~a~s~vvhsYAA~aiEki 525 (960)
T KOG1992|consen 453 VVDFFANQILPDLLSPNVNEFPILKADAIKYIYTFRNQL-------GKEHLMALLPRLIRFLEAESRVVHSYAAIAIEKL 525 (960)
T ss_pred HHHHHHHHhhHHhccCccccccchhhcccceeeeecccC-------ChHHHHHHHHHHHHhccCcchHHHHHHHHHHHhc
Confidence 4444455555555553 4777776665554444444 2356777889999999888888999999999987
Q ss_pred HHhc---------CCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcc-ccCcccHHHHHHHHHHhhCC-----
Q 002658 193 VECA---------SDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVG-AIAPQSLEPLLQSIHECLGS----- 257 (896)
Q Consensus 193 IE~a---------~d~~~~yL~~LlPRL~kLLks~s~kaK~alL~aIgSLA~vg-a~~~pyle~lLp~L~e~Lsd----- 257 (896)
.=.. ...+.+|+..++..|++.++.|.-.--+.++.||-.++.+- ....|++..+++.|.+++..
T Consensus 526 l~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p~~~EneylmKaImRii~i~~~~i~p~~~~~l~~Lteiv~~v~KNP 605 (960)
T KOG1992|consen 526 LTVRENSNAKIFGAEDIAPFVEILLTNLFKALSLPGKAENEYLMKAIMRIISILQSAIIPHAPELLRQLTEIVEEVSKNP 605 (960)
T ss_pred cccccCccccccchhhcchHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHhCHHhhhhhhhHHHHHHHHHHHHHhcCC
Confidence 6322 23345677788888888887764432346788888887665 45678899999888887543
Q ss_pred CCHHHHHHHHHHHHHHHHhcc----hHHHhhHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHhc
Q 002658 258 TDWATRKAAADALSALALHSS----NLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQLWKKIA 318 (896)
Q Consensus 258 dDW~lRKaA~EaLgsLA~avG----e~L~Py~~~~I~~LE~~RfDKvKpVRDaA~eALe~WK~la 318 (896)
.+..-=---.|+++.+-...+ ..+..+-..++.+++.--...+. |.+==++++...+.
T Consensus 606 s~P~fnHYLFEsi~~li~~t~~~~~~~vs~~e~aL~p~fq~Il~eDI~---EfiPYvfQlla~lv 667 (960)
T KOG1992|consen 606 SNPQFNHYLFESIGLLIRKTCKANPSAVSSLEEALFPVFQTILSEDIQ---EFIPYVFQLLAVLV 667 (960)
T ss_pred CCchhHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 233333334455555444333 33444445555444433333333 44444566655555
No 126
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=95.34 E-value=0.14 Score=49.07 Aligned_cols=73 Identities=15% Similarity=0.196 Sum_probs=61.2
Q ss_pred HHHHHHHHhhhcCCCC----hhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHH
Q 002658 77 LPMLLNCLYESSNDPK----PAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLY 151 (896)
Q Consensus 77 Lp~fLs~L~es~ss~k----~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~l 151 (896)
+-.++..+.+.+.+.+ -..|+.++++++.+.+.++..+..++|+|+.++...|..++ +|..|+.+-..+...+
T Consensus 9 ~LGil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~~~e--L~~~al~~W~~~i~~L 85 (107)
T smart00802 9 FLGILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALEIPE--LRSLALRCWHVLIKTL 85 (107)
T ss_pred HHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchh--HHHHHHHHHHHHHHhC
Confidence 4455666665554433 34689999999999999999999999999999999998665 9999999999999999
No 127
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=95.31 E-value=7 Score=44.80 Aligned_cols=188 Identities=16% Similarity=0.138 Sum_probs=115.8
Q ss_pred hHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHH
Q 002658 95 VKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAM 174 (896)
Q Consensus 95 vRKeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL 174 (896)
+=.+.+.++..+..-+++.+..+...=++.++..+-+....||..| .+++..+...+.
T Consensus 150 i~~erL~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a-~~l~~~~~~~l~--------------------- 207 (372)
T PF12231_consen 150 IISERLNIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKA-ISLLLEAKKCLG--------------------- 207 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHH-HHHHHHHHHHhC---------------------
Confidence 4456777888888888888888888888888888888888888874 344444333322
Q ss_pred hcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHhcc-ccCcccHHHHHHHHH
Q 002658 175 MEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSN-QNFMAKASLLPVVGSLSQVG-AIAPQSLEPLLQSIH 252 (896)
Q Consensus 175 ~Eqnk~VQ~gAasALAkIIE~a~d~~~~yL~~LlPRL~kLLks-~s~kaK~alL~aIgSLA~vg-a~~~pyle~lLp~L~ 252 (896)
+++.+... +..+.+..-.. ..|.+.+++||.+++.+ .+++.=..+=.++-.+.+.. -..-.++...+....
T Consensus 208 --~~~~~s~~----~~~~~~~~~~~-~~~~~~~~~~L~~mi~~~~~~~~a~~iW~~~i~LL~~~~~~~w~~~n~wL~v~e 280 (372)
T PF12231_consen 208 --PNKELSKS----VLEDLQRSLEN-GKLIQLYCERLKEMIKSKDEYKLAMQIWSVVILLLGSSRLDSWEHLNEWLKVPE 280 (372)
T ss_pred --hhHHHHHH----HHHHhcccccc-ccHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHhCCchhhccHhHhHHHHHHH
Confidence 12222111 11111111111 15788899999999998 55542222222222222111 123678999999999
Q ss_pred HhhCCCCHHHHHHHHHHHHHHHHhcc--hHHHhh-----HHHHHHHHHhhhcCCCh-hhHHHHHHHH
Q 002658 253 ECLGSTDWATRKAAADALSALALHSS--NLVIDG-----ATSTLTVLEACRFDKIK-PVRDSMNEAL 311 (896)
Q Consensus 253 e~LsddDW~lRKaA~EaLgsLA~avG--e~L~Py-----~~~~I~~LE~~RfDKvK-pVRDaA~eAL 311 (896)
.|+.+.|..+|.+|..+-..+..... +.-.+- ..+++..++....++.+ .+|+.++..+
T Consensus 281 ~cFn~~d~~~k~~A~~aW~~liy~~~~~~~~~~k~l~lL~~Pl~~~l~~~~~~~~~~~~~~~ll~~l 347 (372)
T PF12231_consen 281 KCFNSSDPQVKIQAFKAWRRLIYASNPNELTSPKRLKLLCQPLSSQLRREKSSKTKEEVWWYLLYSL 347 (372)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHhCccccccccHHHHHHHHHHH
Confidence 99999999999999999888877665 222122 24444444555555555 6777754433
No 128
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.30 E-value=0.49 Score=61.41 Aligned_cols=168 Identities=14% Similarity=0.185 Sum_probs=115.2
Q ss_pred HHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHH
Q 002658 135 GMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKL 214 (896)
Q Consensus 135 ~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~a~d~~~~yL~~LlPRL~kL 214 (896)
.-++.+++.+-.|+..- .+ ...+..+|+-++..|+++...+-.-|.-||..++|.-+.. -..+.+-..+..-
T Consensus 792 ~d~~~a~li~~~la~~r---~f---~~sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~v--L~~~dvq~~Vh~R 863 (1692)
T KOG1020|consen 792 ADDDDAKLIVFYLAHAR---SF---SQSFDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSV--LSRPDVQEAVHGR 863 (1692)
T ss_pred ccchhHHHHHHHHHhhh---HH---HHhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHh--hcCHHHHHHHHHh
Confidence 44677777666555544 22 1347889999999999999999999999999999964332 1223344444555
Q ss_pred hcCCchhhHHHHHHHHHHHHhccccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcchHHHhhHHHHHHHHHh
Q 002658 215 LSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSSNLVIDGATSTLTVLEA 294 (896)
Q Consensus 215 Lks~s~kaK~alL~aIgSLA~vga~~~pyle~lLp~L~e~LsddDW~lRKaA~EaLgsLA~avGe~L~Py~~~~I~~LE~ 294 (896)
+.+.+..+|.++++++|.++- ..+.++..+-..+.+...|+.-.+||.|+..|--|....+++-. ...-|.++|-
T Consensus 864 ~~DssasVREAaldLvGrfvl---~~~e~~~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~-i~~~cakmlr- 938 (1692)
T KOG1020|consen 864 LNDSSASVREAALDLVGRFVL---SIPELIFQYYDQIIERILDTGVSVRKRVIKILRDICEETPDFSK-IVDMCAKMLR- 938 (1692)
T ss_pred hccchhHHHHHHHHHHhhhhh---ccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhh-HHHHHHHHHH-
Confidence 567788999999999999874 33445555555666888899999999999999999999985321 2233444443
Q ss_pred hhcCCChhhHHHHHHHH-HHHH
Q 002658 295 CRFDKIKPVRDSMNEAL-QLWK 315 (896)
Q Consensus 295 ~RfDKvKpVRDaA~eAL-e~WK 315 (896)
.-.|.-..|.+.+.+.+ .+|=
T Consensus 939 Rv~DEEg~I~kLv~etf~klWF 960 (1692)
T KOG1020|consen 939 RVNDEEGNIKKLVRETFLKLWF 960 (1692)
T ss_pred HhccchhHHHHHHHHHHHHHhc
Confidence 33343333667766655 4563
No 129
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=95.26 E-value=0.17 Score=48.03 Aligned_cols=73 Identities=16% Similarity=0.181 Sum_probs=61.9
Q ss_pred HHHHHHHHhhhcCC----CChhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHH
Q 002658 77 LPMLLNCLYESSND----PKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLY 151 (896)
Q Consensus 77 Lp~fLs~L~es~ss----~k~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~l 151 (896)
+-.++.++-+.+.+ ..-..|+.++.+++.+.+.++.++.+++|+|+.++...|..+ .+|..|+.+-..+...+
T Consensus 9 ~Lgil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~--~l~~~al~~W~~fi~~L 85 (107)
T PF08064_consen 9 ILGILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIP--ELREEALSCWNCFIKTL 85 (107)
T ss_pred HHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCh--hhHHHHHHHHHHHHHHC
Confidence 44555555555433 456689999999999999999999999999999999999888 79999999999999999
No 130
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=95.17 E-value=0.93 Score=55.33 Aligned_cols=140 Identities=18% Similarity=0.191 Sum_probs=92.2
Q ss_pred chhhHHHHHHHHHHhhcCCCh-HHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhcCCHhHHHHHHHHHHHH
Q 002658 114 TSTHVTKIISHIVKRLKDSDS-GMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKM 192 (896)
Q Consensus 114 I~P~LpkIL~~IlrrLkDpDs-~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasALAkI 192 (896)
...|-++|+|.|..-++-+++ .++-...+-+-.|.+.+- .++....+|+-|+.++.+....+|+.+...+..+
T Consensus 343 ~~~~~~~~~p~l~pi~~~~~~~~~~l~i~e~mdlL~~Kt~------~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv 416 (700)
T KOG2137|consen 343 QNEFGPKMLPALKPIYSASDPKQALLFILENMDLLKEKTP------PEEVKEKILPLLYRSLEDSDVQIQELALQILPTV 416 (700)
T ss_pred hhhhhhhhhHHHHHHhccCCcccchhhHHhhHHHHHhhCC------hHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHH
Confidence 445667777777777765554 334333444444444441 2366788999999999999999999999999999
Q ss_pred HHhcCCCCchhHHHHHHHHHHHh-cCCchhhHHHHHHHHHHHHhccccCcccHHHHHHHHHHhhCCCCHHHH
Q 002658 193 VECASDPPVVAFQKLCARICKLL-SNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATR 263 (896)
Q Consensus 193 IE~a~d~~~~yL~~LlPRL~kLL-ks~s~kaK~alL~aIgSLA~vga~~~pyle~lLp~L~e~LsddDW~lR 263 (896)
.|.++.. -.=+.|+|||-.+. ++.+..+|..+|.|++.+++.-+ ....+ ..+.+++.+....|..+-
T Consensus 417 ~e~iD~~--~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD-~~~v~-d~~lpi~~~~~~~dp~iv 484 (700)
T KOG2137|consen 417 AESIDVP--FVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLD-KAAVL-DELLPILKCIKTRDPAIV 484 (700)
T ss_pred HHhccHH--HHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHHH-HHHhH-HHHHHHHHHhcCCCcHHH
Confidence 9876421 23446889988774 45677789999999999985221 12233 344455566655555543
No 131
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=95.10 E-value=0.25 Score=54.99 Aligned_cols=127 Identities=18% Similarity=0.200 Sum_probs=80.2
Q ss_pred HhhhHHHHHHHH-hcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchh---hH---HHHHHHHHHHHh
Q 002658 163 VGLFVKPLFEAM-MEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFM---AK---ASLLPVVGSLSQ 235 (896)
Q Consensus 163 ~~~lL~pL~eaL-~Eqnk~VQ~gAasALAkIIE~a~d~~~~yL~~LlPRL~kLLks~s~k---aK---~alL~aIgSLA~ 235 (896)
+..++..++.+| +|.+.....+|..||. +. +-|++|+|.|+..++....+ -. ..++..+.|+..
T Consensus 195 Lq~YF~kvisal~dEs~~~~r~aAl~sLr-------~d--sGlhQLvPYFi~f~~eqit~Nl~nl~~LtTv~~m~~sLL~ 265 (450)
T COG5095 195 LQMYFDKVISALLDESDEQTRDAALESLR-------ND--SGLHQLVPYFIHFFNEQITKNLKNLEKLTTVVMMYSSLLK 265 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------cC--ccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhc
Confidence 445555666666 4455555556665542 22 45889999999888754222 11 133444445443
Q ss_pred ccccC-cccHHHHHHHHHHhhC-----C-----CCHHHHHHHHHHHHHHHHhcchHHHhhHHHHHHHHHhhhcC
Q 002658 236 VGAIA-PQSLEPLLQSIHECLG-----S-----TDWATRKAAADALSALALHSSNLVIDGATSTLTVLEACRFD 298 (896)
Q Consensus 236 vga~~-~pyle~lLp~L~e~Ls-----d-----dDW~lRKaA~EaLgsLA~avGe~L~Py~~~~I~~LE~~RfD 298 (896)
--.+| .||+..+||+++-||- + +-..+|+-|++.|..+....+......++++++-+...-+|
T Consensus 266 N~~iFvdPY~hqlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~YktLkPRvtrTllKafLD 339 (450)
T COG5095 266 NKYIFVDPYLHQLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSSYKTLKPRVTRTLLKAFLD 339 (450)
T ss_pred CCceeecHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHhhhhhchHHHHHHHHHHHh
Confidence 23444 8999999999988852 2 12569999999999999998876665556555544333334
No 132
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=95.03 E-value=0.51 Score=56.05 Aligned_cols=130 Identities=22% Similarity=0.264 Sum_probs=90.1
Q ss_pred HhhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCC---c-----hhhHHHHHHHHHHHH
Q 002658 163 VGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQ---N-----FMAKASLLPVVGSLS 234 (896)
Q Consensus 163 ~~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~a~d~~~~yL~~LlPRL~kLLks~---s-----~kaK~alL~aIgSLA 234 (896)
+..|++-+.+++...++..-..|..+|. . .+-|+.|+|+|+.++... + ...=..++..+.|+.
T Consensus 205 lQlYy~~It~a~~g~~~~~r~eAL~sL~-------T--DsGL~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl 275 (576)
T KOG2549|consen 205 LQLYYKEITEACTGSDEPLRQEALQSLE-------T--DSGLQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLL 275 (576)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhhc-------c--CccHHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHh
Confidence 5678888888886666655555555442 1 145888999999888643 1 111123444555554
Q ss_pred hcccc-CcccHHHHHHHHHHhhC----------CCCHHHHHHHHHHHHHHHHhcchHHHhhHHHHHHHHHhhhcCCCh
Q 002658 235 QVGAI-APQSLEPLLQSIHECLG----------STDWATRKAAADALSALALHSSNLVIDGATSTLTVLEACRFDKIK 301 (896)
Q Consensus 235 ~vga~-~~pyle~lLp~L~e~Ls----------ddDW~lRKaA~EaLgsLA~avGe~L~Py~~~~I~~LE~~RfDKvK 301 (896)
.--.+ ..+|+-.+||+|+-|+- |+.|.+|.-|+..+..|....++...-...++++.+...-.|..+
T Consensus 276 ~Np~i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~~ 353 (576)
T KOG2549|consen 276 DNPNIFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDNKK 353 (576)
T ss_pred cCCccchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCC
Confidence 43344 48999999999999853 346999999999999999999977666667777777666666544
No 133
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.02 E-value=0.61 Score=56.41 Aligned_cols=186 Identities=17% Similarity=0.202 Sum_probs=121.1
Q ss_pred hhHHHHHHH-HHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhcCCHhHHHHHHHHHHHHHH
Q 002658 116 THVTKIISH-IVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVE 194 (896)
Q Consensus 116 P~LpkIL~~-IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE 194 (896)
+|-++-+.- ++.-..|.|+.||.+|.+++=+|..-+ + ..........+.|.+.+..|-.+|...+--.-.
T Consensus 193 ~~d~~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~-k--------L~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn 263 (823)
T KOG2259|consen 193 THDREHAARGLIYLEHDQDFRVRTHAVEGLLALSEGF-K--------LSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGN 263 (823)
T ss_pred cccHHHHHHHHHHHhcCCCcchHHHHHHHHHhhcccc-c--------ccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHh
Confidence 344444443 777788999999999999988888733 3 245566777788888888888877554433332
Q ss_pred hcC--C----CCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcc-ccCcccHH----------------------
Q 002658 195 CAS--D----PPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVG-AIAPQSLE---------------------- 245 (896)
Q Consensus 195 ~a~--d----~~~~yL~~LlPRL~kLLks~s~kaK~alL~aIgSLA~vg-a~~~pyle---------------------- 245 (896)
-.+ . ......+...-+++..+.+-...+|..+-.++|.+-++. ....+-++
T Consensus 264 ~~p~~~e~e~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s 343 (823)
T KOG2259|consen 264 RCPAPLERESEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYS 343 (823)
T ss_pred cCCCcccchhhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHh
Confidence 221 1 111346667777777777777666665555666543222 11111111
Q ss_pred ------------------------HHHH-----HHHHhhCCCCHHHHHHHHHHHHHHHHhcchHHHhhHHHHHHHHHhhh
Q 002658 246 ------------------------PLLQ-----SIHECLGSTDWATRKAAADALSALALHSSNLVIDGATSTLTVLEACR 296 (896)
Q Consensus 246 ------------------------~lLp-----~L~e~LsddDW~lRKaA~EaLgsLA~avGe~L~Py~~~~I~~LE~~R 296 (896)
.++| .+...|.|+-.++|++|.+.|+.||...+. |...++.+|-..-
T Consensus 344 ~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~----FA~~aldfLvDMf 419 (823)
T KOG2259|consen 344 SGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPG----FAVRALDFLVDMF 419 (823)
T ss_pred cCCcccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCC----cHHHHHHHHHHHh
Confidence 1222 133346667789999999999999999886 6677888887788
Q ss_pred cCCChhhHHHHHHHHHHH
Q 002658 297 FDKIKPVRDSMNEALQLW 314 (896)
Q Consensus 297 fDKvKpVRDaA~eALe~W 314 (896)
.|.+..||--++-||-..
T Consensus 420 NDE~~~VRL~ai~aL~~I 437 (823)
T KOG2259|consen 420 NDEIEVVRLKAIFALTMI 437 (823)
T ss_pred ccHHHHHHHHHHHHHHHH
Confidence 899998887766655443
No 134
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=94.99 E-value=2.2 Score=51.23 Aligned_cols=193 Identities=20% Similarity=0.156 Sum_probs=101.5
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhhcCCChHHHHHHH
Q 002658 62 IEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACR 141 (896)
Q Consensus 62 a~eLD~La~~L~pd~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrLkDpDs~VR~Ac~ 141 (896)
+..|-.++..++-++|..+...+.... .+...|+.-+-+|..+... +-+.. |...+...+-.-- -+.
T Consensus 349 f~~Lv~~lr~l~~~~L~~l~~~~~~~~--~~~~~r~~~lDal~~aGT~------~av~~----i~~~I~~~~~~~~-ea~ 415 (618)
T PF01347_consen 349 FSRLVRLLRTLSYEDLEELYKQLKSKS--KKEQARKIFLDALPQAGTN------PAVKF----IKDLIKSKKLTDD-EAA 415 (618)
T ss_dssp HHHHHHHHTTS-HHHHHHHHHHHTTS-----HHHHHHHHHHHHHH-SH------HHHHH----HHHHHHTT-S-HH-HHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhc--cHHHHHHHHHHHHHHcCCH------HHHHH----HHHHHHcCCCCHH-HHH
Confidence 677777888777656666666555322 3456677666666554331 12222 3333333221111 134
Q ss_pred HHHHHHHHHHhcccccCCchhHhhhHHHHHHHHh----cCCHhHHHHHHHHHHHHHHhc-CCC---------C----chh
Q 002658 142 DSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMM----EQNKGVQSGAAMCMAKMVECA-SDP---------P----VVA 203 (896)
Q Consensus 142 ~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~----Eqnk~VQ~gAasALAkIIE~a-~d~---------~----~~y 203 (896)
..+..|......| -.+++.-|++.+. ..++.+..+|+.+++.++... ... . ..|
T Consensus 416 ~~l~~l~~~~~~P--------t~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~ 487 (618)
T PF01347_consen 416 QLLASLPFHVRRP--------TEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKY 487 (618)
T ss_dssp HHHHHHHHT-------------HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGG
T ss_pred HHHHHHHhhcCCC--------CHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHH
Confidence 5566666655333 2456666666662 457788899999999998753 221 1 235
Q ss_pred HHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhccccCcccHHHHHHHHHHhhCCC---CHHHHHHHHHHHHHHHHhcchH
Q 002658 204 FQKLCARICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGST---DWATRKAAADALSALALHSSNL 280 (896)
Q Consensus 204 L~~LlPRL~kLLks~s~kaK~alL~aIgSLA~vga~~~pyle~lLp~L~e~Lsdd---DW~lRKaA~EaLgsLA~avGe~ 280 (896)
++.|...|.......+...+...|.+||=+ | ....++.|..++.+. ...+|.+|+.+|..++...++.
T Consensus 488 ~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~---g------~~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~ 558 (618)
T PF01347_consen 488 VPYLEQELKEAVSRGDEEEKIVYLKALGNL---G------HPESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEK 558 (618)
T ss_dssp THHHHHHHHHHHHTT-HHHHHHHHHHHHHH---T-------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHH
T ss_pred HHHHHHHHHHHhhccCHHHHHHHHHHhhcc---C------CchhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHH
Confidence 555555555555555556666667776654 2 113455555555554 5678888888888776666654
Q ss_pred HHhh
Q 002658 281 VIDG 284 (896)
Q Consensus 281 L~Py 284 (896)
+.+.
T Consensus 559 v~~~ 562 (618)
T PF01347_consen 559 VREI 562 (618)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 135
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=94.89 E-value=2.7 Score=47.19 Aligned_cols=189 Identities=13% Similarity=0.233 Sum_probs=117.2
Q ss_pred hHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHH-HHHHHHHHHHHhcccch
Q 002658 37 AMVEMKQKILTSLSKLADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKE-SVRLLALVCELHSELTS 115 (896)
Q Consensus 37 ~~~~Lk~rll~~L~KLsDRDT~k~Aa~eLD~La~~L~pd~Lp~fLs~L~es~ss~k~~vRKe-AIllLG~IAeg~~d~I~ 115 (896)
.+.-+|+.++..+...-++ +..++.+..++ +++++..++..-.+..|..|.. .+.+++++++..++.+.
T Consensus 39 ~lr~iKkeIL~Li~t~i~~------~~~~~~v~~~~----i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~ 108 (319)
T PF08767_consen 39 LLRTIKKEILKLIETFISK------AEDPEEVANNF----IPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQ 108 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHT-------S-HHHHHHHT----HHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCC
T ss_pred HHHHHHHHHHHHHHHHHhc------cCCHHHHHHHH----HHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhh
Confidence 4556666666666555211 11233333322 6777776653333345677766 77788889999889888
Q ss_pred hhHHHHHHHHHHh----hcC---CChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhcCCHhHHHHHHHH
Q 002658 116 THVTKIISHIVKR----LKD---SDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMC 188 (896)
Q Consensus 116 P~LpkIL~~Ilrr----LkD---pDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasA 188 (896)
++++.|+..+... +.+ .-|..|..--.-+..+..++..--..-..+.+..++..+.-++..++..+.+.++.+
T Consensus 109 ~~v~~I~~~vf~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~ 188 (319)
T PF08767_consen 109 PQVPQILEAVFECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNI 188 (319)
T ss_dssp CCHHHHHHHHHHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 9988888876655 333 238999999999999998875421111234566677777777778999999999999
Q ss_pred HHHHHHhcCCCCc--------hhHHHHHHHHHHHhcCC----chhhHHHHHHHHHHHHh
Q 002658 189 MAKMVECASDPPV--------VAFQKLCARICKLLSNQ----NFMAKASLLPVVGSLSQ 235 (896)
Q Consensus 189 LAkIIE~a~d~~~--------~yL~~LlPRL~kLLks~----s~kaK~alL~aIgSLA~ 235 (896)
|..+++....... .|+-.++.-++.++-+. .++....+|..+-.++.
T Consensus 189 l~~ll~~~~~~~~~~~~~F~~~y~~~il~~if~vltD~~Hk~gf~~q~~iL~~Lf~~ve 247 (319)
T PF08767_consen 189 LLELLNNVSKTNPEFANQFYQQYYLDILQDIFSVLTDSDHKSGFKLQSQILSNLFRLVE 247 (319)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHHHHHHSTT-GGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHHHH
Confidence 9999998633111 23445666666666554 23333344444444433
No 136
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.81 E-value=0.82 Score=56.20 Aligned_cols=203 Identities=13% Similarity=0.193 Sum_probs=135.2
Q ss_pred HHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccc
Q 002658 77 LPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKE 156 (896)
Q Consensus 77 Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~ 156 (896)
..+++.+|..-..+..-.+=-++.+++-.+....+..+.| -++.+...|.-|.+.+|.++..+|-.+|.....
T Consensus 243 ~s~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r~l~p----avs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~--- 315 (865)
T KOG1078|consen 243 DSPLFPFLESCLRHKSEMVIYEAARAIVSLPNTNSRELAP----AVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQ--- 315 (865)
T ss_pred hhhHHHHHHHHHhchhHHHHHHHHHHHhhccccCHhhcch----HHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCc---
Confidence 5566666666555544455556666666666655555666 677777888889999999999999999988732
Q ss_pred cCCchhHhhhHHHHHHHH-hcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHh
Q 002658 157 ENNGTVVGLFVKPLFEAM-MEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQ 235 (896)
Q Consensus 157 e~~~~~~~~lL~pL~eaL-~Eqnk~VQ~gAasALAkIIE~a~d~~~~yL~~LlPRL~kLLks~s~kaK~alL~aIgSLA~ 235 (896)
....+.+=++.| .+.|..+-. .|++.+...-.+ .-++.|+-.+.....+-+-.-|-..+++|.++..
T Consensus 316 ------~v~~cN~elE~lItd~NrsIat---~AITtLLKTG~e---~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~ 383 (865)
T KOG1078|consen 316 ------AVTVCNLDLESLITDSNRSIAT---LAITTLLKTGTE---SSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCL 383 (865)
T ss_pred ------cccccchhHHhhhcccccchhH---HHHHHHHHhcch---hHHHHHHHHHHHHHHhccccceEEeHHHHHHHHh
Confidence 222333333333 566766543 444444432211 2345566666665554333334467778887753
Q ss_pred ccccCcccHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHHHHhcchHHHhhHHHHHHHHHhhhcCCCh
Q 002658 236 VGAIAPQSLEPLLQSIHECLGS-TDWATRKAAADALSALALHSSNLVIDGATSTLTVLEACRFDKIK 301 (896)
Q Consensus 236 vga~~~pyle~lLp~L~e~Lsd-dDW~lRKaA~EaLgsLA~avGe~L~Py~~~~I~~LE~~RfDKvK 301 (896)
.|+---..+|..|...|.+ ....-+++.+|++..++...++.=.+-+..+..++|.|.|..+-
T Consensus 384 ---~fp~k~~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe~~L~~LCefIEDce~~~i~ 447 (865)
T KOG1078|consen 384 ---KFPRKHTVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKERGLEHLCEFIEDCEFTQIA 447 (865)
T ss_pred ---hccHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHhccchHHH
Confidence 4555555677888887765 45788999999999999999876667788888999999988543
No 137
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=94.73 E-value=8.5 Score=46.61 Aligned_cols=97 Identities=20% Similarity=0.309 Sum_probs=66.9
Q ss_pred HHHcC-CChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHH
Q 002658 48 SLSKL-ADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIV 126 (896)
Q Consensus 48 ~L~KL-sDRDT~k~Aa~eLD~La~~L~pd~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~Il 126 (896)
+|.-. ++..+.+.|++-+-++...+|. .-..-+.++++-..+.+..+|+.||+.|-.+|... ..|+++|.-++.
T Consensus 28 il~~~kg~~k~K~Laaq~I~kffk~FP~-l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~----~~~v~kvaDvL~ 102 (556)
T PF05918_consen 28 ILDGVKGSPKEKRLAAQFIPKFFKHFPD-LQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDN----PEHVSKVADVLV 102 (556)
T ss_dssp HHHGGGS-HHHHHHHHHHHHHHHCC-GG-GHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T------T-HHHHHHHHH
T ss_pred HHHHccCCHHHHHHHHHHHHHHHhhChh-hHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhH----HHHHhHHHHHHH
Confidence 44434 6788999999999999998853 44455666666556788999999999998888753 457889999999
Q ss_pred HhhcCCChHHHHHHHHHHHHHHH
Q 002658 127 KRLKDSDSGMKEACRDSIGSLSK 149 (896)
Q Consensus 127 rrLkDpDs~VR~Ac~~aLG~LA~ 149 (896)
+.|.-.++..+.++-++|..|..
T Consensus 103 QlL~tdd~~E~~~v~~sL~~ll~ 125 (556)
T PF05918_consen 103 QLLQTDDPVELDAVKNSLMSLLK 125 (556)
T ss_dssp HHTT---HHHHHHHHHHHHHHHH
T ss_pred HHHhcccHHHHHHHHHHHHHHHh
Confidence 99999998888888887744433
No 138
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=94.69 E-value=2.8 Score=46.92 Aligned_cols=192 Identities=18% Similarity=0.169 Sum_probs=106.8
Q ss_pred HHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccc
Q 002658 77 LPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKE 156 (896)
Q Consensus 77 Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~ 156 (896)
+..|++++.. +.+.....+.+.+|+.........+. +.++.++.++|+|..+.||.+-...+|.+.. ....
T Consensus 24 ~~~l~~~~~K---E~nE~aL~~~l~al~~~~~~~~~~~~---~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~---~~~~ 94 (339)
T PF12074_consen 24 VQGLSPLLSK---ESNEAALSALLSALFKHLFFLSSELP---KKVVDAFKKGLKDKKPPVRRAWLLCLGEALW---ESPN 94 (339)
T ss_pred HHHHHHHHHh---hcCHHHHHHHHHHHHHHHHHhCcCCC---HHHHHHHHHHhcCCCCcHHHHHHHHHHHHHh---hccC
Confidence 3444555542 34456667777777776665533333 6779999999999999999999999998876 1111
Q ss_pred cCCchhHhhhHHHHHHHHh----cCCHhHHH---HHHHHHHHHHHhc---------------CCCCchhHHHHHHHHHHH
Q 002658 157 ENNGTVVGLFVKPLFEAMM----EQNKGVQS---GAAMCMAKMVECA---------------SDPPVVAFQKLCARICKL 214 (896)
Q Consensus 157 e~~~~~~~~lL~pL~eaL~----Eqnk~VQ~---gAasALAkIIE~a---------------~d~~~~yL~~LlPRL~kL 214 (896)
.........|+++|++.+. .+.+.+|. .+++++..+.... -+....+ .+=+|+..-
T Consensus 95 ~~~~~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~kps~--ll~~kvysk 172 (339)
T PF12074_consen 95 SDSLKFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLALSSWKLDKIDSKNISFWSLALDPKPSF--LLSEKVYSK 172 (339)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHhccccchhhhhhhhhhhhhccCCCcch--hcCHHHHhc
Confidence 1122446667778887773 33445552 2444444311100 0000011 122333333
Q ss_pred hcCCchhhHHHHHHHHHHHHh-ccccCccc-HHHHHHHHHHhhCCC--CHHHHHHHHHHHHHHHHhcchHH
Q 002658 215 LSNQNFMAKASLLPVVGSLSQ-VGAIAPQS-LEPLLQSIHECLGST--DWATRKAAADALSALALHSSNLV 281 (896)
Q Consensus 215 Lks~s~kaK~alL~aIgSLA~-vga~~~py-le~lLp~L~e~Lsdd--DW~lRKaA~EaLgsLA~avGe~L 281 (896)
|.+. .--.-++.++-+++. ........ ...+-..++-++.+. .|.+|+.|+++|..+....+..+
T Consensus 173 l~~~--~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~l 241 (339)
T PF12074_consen 173 LASE--EDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPELL 241 (339)
T ss_pred cCCH--hHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChHHH
Confidence 2111 111133444444432 11111111 345556666777777 89999999999999998888653
No 139
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=94.68 E-value=6.3 Score=44.83 Aligned_cols=114 Identities=16% Similarity=0.196 Sum_probs=86.5
Q ss_pred hHHHHHHHHHHHHHc--C------CChhHHHHHHHHHHHHHhcCC-CCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHH
Q 002658 37 AMVEMKQKILTSLSK--L------ADRDTHQIAIEDLEKTIQTLS-QESLPMLLNCLYESSNDPKPAVKKESVRLLALVC 107 (896)
Q Consensus 37 ~~~~Lk~rll~~L~K--L------sDRDT~k~Aa~eLD~La~~L~-pd~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IA 107 (896)
-+|+|.|+....=.. + .-|++...-+..|+++.+... ....++|++-|+--+-.++..++--+..-+|.+.
T Consensus 31 dlfeLpqiaaaLqldpdifgfeNenhrekttlcVscLERLfkakegahlapnlmpdLQrGLiaddasVKiLackqigcil 110 (524)
T KOG4413|consen 31 DLFELPQIAAALQLDPDIFGFENENHREKTTLCVSCLERLFKAKEGAHLAPNLMPDLQRGLIADDASVKILACKQIGCIL 110 (524)
T ss_pred ccchhHHHHHHHhcCCCCcccccccccchhhhHHHHHHHHHhhccchhhchhhhHHHHhcccCCcchhhhhhHhhhhHHH
Confidence 346777665443222 1 235566677888999888754 4458999999998887888899999999999999
Q ss_pred HHhccc-chhhH----HHHHHHHHHhhcCCChHHHHHHHHHHHHHHHH
Q 002658 108 ELHSEL-TSTHV----TKIISHIVKRLKDSDSGMKEACRDSIGSLSKL 150 (896)
Q Consensus 108 eg~~d~-I~P~L----pkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~ 150 (896)
|-|... +...+ ..|++.|+..+...|-.|-.|+.++|.+|+..
T Consensus 111 EdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrialf 158 (524)
T KOG4413|consen 111 EDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALF 158 (524)
T ss_pred hcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc
Confidence 998833 44433 46888899999999999999999999998754
No 140
>PF05536 Neurochondrin: Neurochondrin
Probab=94.61 E-value=6.4 Score=47.55 Aligned_cols=194 Identities=12% Similarity=0.090 Sum_probs=128.8
Q ss_pred HHHHHHhhhcCCCC-hhhHHHHHHHHHHHHHHhccc-c--hhhHHHHHHHHHHhhcCCCh-HHHHHHHHHHHHHHHHHhc
Q 002658 79 MLLNCLYESSNDPK-PAVKKESVRLLALVCELHSEL-T--STHVTKIISHIVKRLKDSDS-GMKEACRDSIGSLSKLYLN 153 (896)
Q Consensus 79 ~fLs~L~es~ss~k-~~vRKeAIllLG~IAeg~~d~-I--~P~LpkIL~~IlrrLkDpDs-~VR~Ac~~aLG~LA~~li~ 153 (896)
.||.-|+.+...+. .......-+++..++..|.+. + .|.+-.-+|.++..+...+. .+-.=|..++..++ ..
T Consensus 53 ~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia---s~ 129 (543)
T PF05536_consen 53 KFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFCRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIA---SS 129 (543)
T ss_pred hHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHcCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHH---cC
Confidence 46666665543322 233344445556666666633 3 57788889999999988776 55555555555555 22
Q ss_pred ccccCCchh--HhhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCC-C---CchhHHHHHHHHHHHhcCCchhhHHHHH
Q 002658 154 GKEENNGTV--VGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASD-P---PVVAFQKLCARICKLLSNQNFMAKASLL 227 (896)
Q Consensus 154 ~~~e~~~~~--~~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~a~d-~---~~~yL~~LlPRL~kLLks~s~kaK~alL 227 (896)
+. +... -...++.|++.+.. .+..++-|...|..++-.... . ....+..+++++...+...+...|-.++
T Consensus 130 ~~---G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell 205 (543)
T PF05536_consen 130 PE---GAKALLESGAVPALCEIIPN-QSFQMEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELL 205 (543)
T ss_pred cH---hHHHHHhcCCHHHHHHHHHh-CcchHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHH
Confidence 11 1122 22367788888865 556667777777777766432 1 1235778999999999988777788889
Q ss_pred HHHHHHHh-cc------ccCcccHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHHHHhcch
Q 002658 228 PVVGSLSQ-VG------AIAPQSLEPLLQSIHECLGS-TDWATRKAAADALSALALHSSN 279 (896)
Q Consensus 228 ~aIgSLA~-vg------a~~~pyle~lLp~L~e~Lsd-dDW~lRKaA~EaLgsLA~avGe 279 (896)
..++.+.. .. ...+.....+...|..+|.+ ....-|..|+...+.|..+.|.
T Consensus 206 ~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~sr~~~~~R~~al~Laa~Ll~~~G~ 265 (543)
T PF05536_consen 206 EFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQSRLTPSQRDPALNLAASLLDLLGP 265 (543)
T ss_pred HHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCh
Confidence 99999853 21 12345666777778888877 3677899999999999999994
No 141
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=94.61 E-value=1.4 Score=56.67 Aligned_cols=175 Identities=13% Similarity=0.107 Sum_probs=110.5
Q ss_pred HHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHH----hcCCHhHH-HHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 002658 137 KEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAM----MEQNKGVQ-SGAAMCMAKMVECASDPPVVAFQKLCARI 211 (896)
Q Consensus 137 R~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL----~Eqnk~VQ-~gAasALAkIIE~a~d~~~~yL~~LlPRL 211 (896)
|.-|--++-.|+..+...-+ +..+.+-..|++.| ..++..+- -..+.+++...+. ...+ +-.++|++
T Consensus 750 rrgael~L~~l~~~fg~sl~----~klp~l~~~L~~~L~~~~~~~d~~~~s~~vf~s~~~~m~s---~l~~-~~~~l~~l 821 (1549)
T KOG0392|consen 750 RRGAELFLKILSKMFGGSLA----AKLPHLWDFLLKALSGLIDGNDEFLSSFEVFNSLAPLMHS---FLHP-LGSLLPRL 821 (1549)
T ss_pred hhhHHHHHHHHHHHhhHHHH----HhcchHHHHHHHhhhccCCCCcchhhhHHHHHHHHHhhhh---hhhh-hhhhhhHH
Confidence 55666677777777622111 12223333344444 22222211 1233333333332 2222 56788999
Q ss_pred HHHhcCCchhhHHHHHHHHHHHHhccccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcc-hHHHhhHHHHHH
Q 002658 212 CKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSS-NLVIDGATSTLT 290 (896)
Q Consensus 212 ~kLLks~s~kaK~alL~aIgSLA~vga~~~pyle~lLp~L~e~LsddDW~lRKaA~EaLgsLA~avG-e~L~Py~~~~I~ 290 (896)
+.++.+.+.-+|.++..||+.++..+ ...-+..++..+...+.+-+.-.|+..++++..+..... -.+.||..=++.
T Consensus 822 ~~~~~s~~~a~r~~~ar~i~~~~k~~--~~e~m~~v~~~~~~ll~~~~~~~~r~~a~e~~~~l~~~l~~~l~~~~~Llv~ 899 (1549)
T KOG0392|consen 822 FFFVRSIHIAVRYAAARCIGTMFKSA--TRETMATVINGFLPLLGDLDKFVRRQGADELIELLDAVLMVGLVPYNPLLVV 899 (1549)
T ss_pred HHhcccchHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhhhccchhhHhhhhhHHHHHHHHHHhhcccccccceeehh
Confidence 99999999999999999999997644 111222333333344555556678888888777777777 667788888888
Q ss_pred HHHhhhcCCChhhHHHHHHHHHHHHHhccCC
Q 002658 291 VLEACRFDKIKPVRDSMNEALQLWKKIAGKV 321 (896)
Q Consensus 291 ~LE~~RfDKvKpVRDaA~eALe~WK~la~~~ 321 (896)
.|..+.-|.+..||+++.+++-...-+.+..
T Consensus 900 pllr~msd~~d~vR~aat~~fa~lip~~~le 930 (1549)
T KOG0392|consen 900 PLLRRMSDQIDSVREAATKVFAKLIPLLPLE 930 (1549)
T ss_pred hhhcccccchHHHHHHHHHHHHHHhcccccc
Confidence 8889999999999999988888766666553
No 142
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=94.60 E-value=5.1 Score=47.97 Aligned_cols=219 Identities=18% Similarity=0.149 Sum_probs=117.0
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhhcCCChHHHH
Q 002658 59 QIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKE 138 (896)
Q Consensus 59 k~Aa~eLD~La~~L~pd~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrLkDpDs~VR~ 138 (896)
...+..|-.+...++.++|..++..+.. .. +..|+.-+-+|..+.. .+.+ .+|...++..+-.- .
T Consensus 310 ~~~f~~lv~~lR~~~~e~l~~l~~~~~~-~~---~~~r~~~~Dal~~~GT------~~a~----~~i~~~i~~~~~~~-~ 374 (574)
T smart00638 310 AAKFLRLVRLLRTLSEEQLEQLWRQLYE-KK---KKARRIFLDAVAQAGT------PPAL----KFIKQWIKNKKITP-L 374 (574)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHh-CC---HHHHHHHHHHHHhcCC------HHHH----HHHHHHHHcCCCCH-H
Confidence 3445566777777777777777777653 21 4555555555544332 1222 23333333333111 2
Q ss_pred HHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhc----CCHhHHHHHHHHHHHHHHh-cCCCC-------chhHHH
Q 002658 139 ACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMME----QNKGVQSGAAMCMAKMVEC-ASDPP-------VVAFQK 206 (896)
Q Consensus 139 Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~E----qnk~VQ~gAasALAkIIE~-a~d~~-------~~yL~~ 206 (896)
-+...+..+...+..+ -.+++.-|++.+.. +.+.+..+|..+++.++.. +.+.. ..|++.
T Consensus 375 ea~~~~~~~~~~~~~P--------t~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~ 446 (574)
T smart00638 375 EAAQLLAVLPHTARYP--------TEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKY 446 (574)
T ss_pred HHHHHHHHHHHhhhcC--------CHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHH
Confidence 3455566666666444 24577777777742 3566778899999988874 32221 234444
Q ss_pred HHHHHHHHhcCCchhhHHHHHHHHHHHHhccccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcchHHHhhHH
Q 002658 207 LCARICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSSNLVIDGAT 286 (896)
Q Consensus 207 LlPRL~kLLks~s~kaK~alL~aIgSLA~vga~~~pyle~lLp~L~e~LsddDW~lRKaA~EaLgsLA~avGe~L~Py~~ 286 (896)
|...|....+..+...+...|.+||= +| .+..+..+.|.+. .-......+|.+|+.+|..++...++.+.+.+-
T Consensus 447 l~~~l~~~~~~~~~~~~~~~LkaLGN---~g--~~~~i~~l~~~l~-~~~~~~~~iR~~Av~Alr~~a~~~p~~v~~~l~ 520 (574)
T smart00638 447 LHELLQQAVSKGDEEEIQLYLKALGN---AG--HPSSIKVLEPYLE-GAEPLSTFIRLAAILALRNLAKRDPRKVQEVLL 520 (574)
T ss_pred HHHHHHHHHhcCCchheeeHHHhhhc---cC--ChhHHHHHHHhcC-CCCCCCHHHHHHHHHHHHHHHHhCchHHHHHHH
Confidence 44444444444444434445555553 23 1212222333332 112245789999999999999888876665433
Q ss_pred HHHHHHHhhhcCCChhhHHHHHHHH
Q 002658 287 STLTVLEACRFDKIKPVRDSMNEAL 311 (896)
Q Consensus 287 ~~I~~LE~~RfDKvKpVRDaA~eAL 311 (896)
++ +. ..+...+||=+|.-+|
T Consensus 521 ~i---~~--n~~e~~EvRiaA~~~l 540 (574)
T smart00638 521 PI---YL--NRAEPPEVRMAAVLVL 540 (574)
T ss_pred HH---Hc--CCCCChHHHHHHHHHH
Confidence 33 32 2224445776654433
No 143
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=94.57 E-value=0.14 Score=49.05 Aligned_cols=125 Identities=15% Similarity=0.118 Sum_probs=85.1
Q ss_pred hHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCC---CCc---------
Q 002658 134 SGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASD---PPV--------- 201 (896)
Q Consensus 134 s~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~a~d---~~~--------- 201 (896)
+.||...+.+++.|+.+.. + +.|+.+++.++..+.. ++.........|..+.|+..+ ...
T Consensus 2 ~~i~~kl~~~l~~i~~~~~---P----~~Wp~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~ 73 (148)
T PF08389_consen 2 PFIRNKLAQVLAEIAKRDW---P----QQWPDFLEDLLQLLQS-SPQHLELVLRILRILPEEITDFRRSSLSQERRRELK 73 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHT---T----TTSTTHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHC---h----hhCchHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHH
Confidence 4678888899999988873 1 4599999999999875 577777888899999988632 111
Q ss_pred ----hhHHHHHHHHHHHhcCCc----hhhHHHHHHHHHHHHhcc--ccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 002658 202 ----VAFQKLCARICKLLSNQN----FMAKASLLPVVGSLSQVG--AIAPQSLEPLLQSIHECLGSTDWATRKAAADAL 270 (896)
Q Consensus 202 ----~yL~~LlPRL~kLLks~s----~kaK~alL~aIgSLA~vg--a~~~pyle~lLp~L~e~LsddDW~lRKaA~EaL 270 (896)
..++.++.-+.++|.... ......+|.|+++.+.-. ..+.. ..+++.++++|.+++ +|.+|+|||
T Consensus 74 ~~l~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~i~~--~~~l~~~~~~l~~~~--~~~~A~~cl 148 (148)
T PF08389_consen 74 DALRSNSPDILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIELIIN--SNLLNLIFQLLQSPE--LREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHHHHS--SSHHHHHHHHTTSCC--CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHHhcc--HHHHHHHHHHcCCHH--HHHHHHHhC
Confidence 113445555555555432 455668888888886522 11111 137888888886655 489999987
No 144
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.54 E-value=8.4 Score=48.14 Aligned_cols=243 Identities=15% Similarity=0.186 Sum_probs=137.4
Q ss_pred CChhHHHHHHHHHHHHHh--------cCCCCCHHHH----HHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccchhhHHH
Q 002658 53 ADRDTHQIAIEDLEKTIQ--------TLSQESLPML----LNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTK 120 (896)
Q Consensus 53 sDRDT~k~Aa~eLD~La~--------~L~pd~Lp~f----Ls~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I~P~Lpk 120 (896)
..+-.+..|+-.++++.. .+.++.+++| |..|..+.+.+....-+.-++++-.+.....+.+.||.+.
T Consensus 510 ~s~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p~~~EneylmKaImRii~i~~~~i~p~~~~ 589 (960)
T KOG1992|consen 510 ESRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALSLPGKAENEYLMKAIMRIISILQSAIIPHAPE 589 (960)
T ss_pred cchHHHHHHHHHHHhccccccCccccccchhhcchHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHhCHHhhhhhhhH
Confidence 356688999999998864 1234455553 4444444433333333334444444444455555555554
Q ss_pred HHHHH----HHhhcCC-ChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHH-hcCCHhHHHHHHHHHHHHHH
Q 002658 121 IISHI----VKRLKDS-DSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAM-MEQNKGVQSGAAMCMAKMVE 194 (896)
Q Consensus 121 IL~~I----lrrLkDp-Ds~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL-~Eqnk~VQ~gAasALAkIIE 194 (896)
++..+ ...-+.| +|..-+-.-+++|.+.....+.+.... ..|..-|-|+|+.+ .+.-...--.++.-|+-++|
T Consensus 590 ~l~~Lteiv~~v~KNPs~P~fnHYLFEsi~~li~~t~~~~~~~v-s~~e~aL~p~fq~Il~eDI~EfiPYvfQlla~lve 668 (960)
T KOG1992|consen 590 LLRQLTEIVEEVSKNPSNPQFNHYLFESIGLLIRKTCKANPSAV-SSLEEALFPVFQTILSEDIQEFIPYVFQLLAVLVE 668 (960)
T ss_pred HHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHhccCchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44433 3334555 456667777889988888854321111 22444444555555 33333344467888899999
Q ss_pred hcCCCCchhHHHHHHHHHHHhcCCchhhH---HHHHHHHHHHHhcc-ccCc--ccHHHHHHHHHHhhCCCCHHHHHHHHH
Q 002658 195 CASDPPVVAFQKLCARICKLLSNQNFMAK---ASLLPVVGSLSQVG-AIAP--QSLEPLLQSIHECLGSTDWATRKAAAD 268 (896)
Q Consensus 195 ~a~d~~~~yL~~LlPRL~kLLks~s~kaK---~alL~aIgSLA~vg-a~~~--pyle~lLp~L~e~LsddDW~lRKaA~E 268 (896)
.....+.+.+-.|+| .+|.-.--+.+ ++++.++.+++..| ..+. ..+..++..+.....+...+ -...+
T Consensus 669 ~~~~~ip~~~~~l~~---~lLsp~lW~r~gNipalvrLl~aflk~g~~~~~~~~~l~~iLGifqkLiaSka~D--h~GF~ 743 (960)
T KOG1992|consen 669 HSSGTIPDSYSPLFP---PLLSPNLWKRSGNIPALVRLLQAFLKTGSQIVEAADKLSGILGIFQKLIASKAND--HHGFY 743 (960)
T ss_pred hcCCCCchhHHHHHH---HhcCHHHHhhcCCcHHHHHHHHHHHhcCchhhcccccchhHHHHHHHHhcCcccc--hhHHH
Confidence 864432222222222 22222222222 37788888888877 4444 45667777777766542211 23567
Q ss_pred HHHHHHHhcc-hHHHhhHHHHHHH-HHhhhcCCCh
Q 002658 269 ALSALALHSS-NLVIDGATSTLTV-LEACRFDKIK 301 (896)
Q Consensus 269 aLgsLA~avG-e~L~Py~~~~I~~-LE~~RfDKvK 301 (896)
.|..|...++ ..+.||+..+... ++..+.-|.+
T Consensus 744 LLn~i~~~~~~~~~~py~k~i~~llf~RlqnskT~ 778 (960)
T KOG1992|consen 744 LLNTIIESIPPNELAPYMKQIFGLLFQRLQNSKTE 778 (960)
T ss_pred HHHHHHhcCCHhhhhHHHHHHHHHHHHHHhccCcH
Confidence 8888888888 7789999999764 4555555655
No 145
>PF10350 DUF2428: Putative death-receptor fusion protein (DUF2428); InterPro: IPR019442 This domain is found in a family of proteins of unknown function that are conserved from plants to humans. Several of these proteins have been annotated as being HEAT repeat-containing proteins while others are designated as death-receptor interacting proteins, but neither of these has yet been confirmed. Aberrations in the genes encoding these proteins have been observed in benign thyroid adenomas [].
Probab=94.51 E-value=0.86 Score=49.47 Aligned_cols=169 Identities=14% Similarity=0.211 Sum_probs=120.2
Q ss_pred hhhHHHHHHHHHHHHHHhc-------cc-chhhHHHHHHHHHHhhcCC-ChHHHHHHHHHHHHHHHHHhcccccCCchhH
Q 002658 93 PAVKKESVRLLALVCELHS-------EL-TSTHVTKIISHIVKRLKDS-DSGMKEACRDSIGSLSKLYLNGKEENNGTVV 163 (896)
Q Consensus 93 ~~vRKeAIllLG~IAeg~~-------d~-I~P~LpkIL~~IlrrLkDp-Ds~VR~Ac~~aLG~LA~~li~~~~e~~~~~~ 163 (896)
|..=|++-.+|+.+++.+. .. -..++.+|-.+++..|..- ...+=.++..++..+++.+...........-
T Consensus 61 Wr~iKE~s~Ll~~l~~~~~~~~~~~~~~ls~~~i~~ig~~l~~~L~~~rHrGAfe~~~~~f~~lc~~l~~~~~~~l~~LP 140 (255)
T PF10350_consen 61 WRSIKESSLLLGTLVEKIPLPPDSSNSLLSPDQIEKIGELLIEQLLEIRHRGAFESVYPGFTALCRRLWSSNNPELSELP 140 (255)
T ss_pred HHHHHHHHHHHHHHHHhccccCcccccCCCHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHhcCCCchHHHhH
Confidence 6667899999999997652 12 3567888888888877654 3466778888899999999743221122334
Q ss_pred hhhHHHHHHHHhcCCH------hHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCch--------hhHHHHHHH
Q 002658 164 GLFVKPLFEAMMEQNK------GVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNF--------MAKASLLPV 229 (896)
Q Consensus 164 ~~lL~pL~eaL~Eqnk------~VQ~gAasALAkIIE~a~d~~~~yL~~LlPRL~kLLks~s~--------kaK~alL~a 229 (896)
...|..+++.+..++. +=-+|--.++.+++...+....+.|+..+.+|+++.+.+.. -.+.+++++
T Consensus 141 ~~WL~~~l~~i~~~~~~~~~iTRRSAGLP~~i~aiL~ae~~~~~~ll~~~~~~Ll~ia~~~~~~~~~~~~d~~qVHAlNi 220 (255)
T PF10350_consen 141 EEWLDELLEAIESKGQQKLSITRRSAGLPFLILAILSAEPSNSRPLLHRTMKSLLEIAKSPSTQHEDEKSDLPQVHALNI 220 (255)
T ss_pred HHHHHHHHHHHhcccccccccccccCcHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCcccccccccchHHHHHHHH
Confidence 4466677777754411 11256777888888775443337899999999999998754 356788999
Q ss_pred HHHHHh---ccccCcccHHHHHHHHHHhhCCCCHH
Q 002658 230 VGSLSQ---VGAIAPQSLEPLLQSIHECLGSTDWA 261 (896)
Q Consensus 230 IgSLA~---vga~~~pyle~lLp~L~e~LsddDW~ 261 (896)
+.+|+. .+....+|++..+..-++.+.+++|.
T Consensus 221 Lr~if~ds~L~~~~~~yi~~~l~lai~~f~s~~Wa 255 (255)
T PF10350_consen 221 LRAIFRDSKLSEDVSPYIEDALILAIKGFSSPDWA 255 (255)
T ss_pred HHHHHhcchhHHHHHHHHHHHHHHHHHhCCCccCC
Confidence 999873 23567889999999999999999884
No 146
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.48 E-value=0.66 Score=51.94 Aligned_cols=148 Identities=13% Similarity=0.172 Sum_probs=100.8
Q ss_pred hHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhccccCcccHH
Q 002658 166 FVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLE 245 (896)
Q Consensus 166 lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~a~d~~~~yL~~LlPRL~kLLks~s~kaK~alL~aIgSLA~vga~~~pyle 245 (896)
++..+...|....-.|-.+||+|++.+.+...+.+..-++.++-.|..--...+--+++.+..++.++... .. -.
T Consensus 130 vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~--vt---p~ 204 (334)
T KOG2933|consen 130 VIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQELDDLVTQLLHKASQDNRFVREDAEKALVAMVNH--VT---PQ 204 (334)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhc--cC---hH
Confidence 33344444433344567789999999999875544333333332222211222333577777777777531 11 12
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcc--hHHHhhHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHhc
Q 002658 246 PLLQSIHECLGSTDWATRKAAADALSALALHSS--NLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQLWKKIA 318 (896)
Q Consensus 246 ~lLp~L~e~LsddDW~lRKaA~EaLgsLA~avG--e~L~Py~~~~I~~LE~~RfDKvKpVRDaA~eALe~WK~la 318 (896)
.+++.|+.++......+|..++-|+......+| ....+|....+..+...-.|+...+|+++.-++.-.+.+-
T Consensus 205 ~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~rl~v~~~~~~~~~dl~~a~~~~~~d~Lp~~~~~a~~~~~~~~~v~ 279 (334)
T KOG2933|consen 205 KLLRKLIPILQHSNPRVRAKAALCFSRCVIRLGVLPVLLQGSCDLSRAAQEQGSDKLPELREAARFVRLELKEVL 279 (334)
T ss_pred HHHHHHHHHHhhhchhhhhhhhccccccceeccccchhhHhHHHHHHHHHhhhcccccccccchhHHHHhHHHHH
Confidence 577888888999899999999999988777777 7777888899999999999999989988777766666554
No 147
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=94.45 E-value=0.71 Score=59.12 Aligned_cols=176 Identities=11% Similarity=0.177 Sum_probs=122.3
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhhcCCChHH
Q 002658 57 THQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGM 136 (896)
Q Consensus 57 T~k~Aa~eLD~La~~L~pd~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrLkDpDs~V 136 (896)
.+..-++.|..+..++.+..+-.++.++......+.|..|.-.++.+........+.+...+++++.+++..|.|.+-.|
T Consensus 145 Vre~caq~L~~~l~~~~~s~~~~~~~il~q~~~q~~w~ir~Ggll~iky~~air~d~l~~~~~~vl~~~i~~L~ds~ddv 224 (1549)
T KOG0392|consen 145 VREACAQALGAYLKHMDESLIKETLDILLQMLRQPNWEIRHGGLLGIKYNVAIRQDLLFQLLNLVLDFVIEGLEDSDDDV 224 (1549)
T ss_pred hHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHcCcchhheechHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHH
Confidence 34555677888888888878888888888877777999999999999988888888888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhcCCHhHHHH---HHHHHHHHHHhcC--CCCc-hhH-HHHHH
Q 002658 137 KEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSG---AAMCMAKMVECAS--DPPV-VAF-QKLCA 209 (896)
Q Consensus 137 R~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~Eqnk~VQ~g---AasALAkIIE~a~--d~~~-~yL-~~LlP 209 (896)
|..++.++..++....+-.. ..+..++..|...|.+=.- .-.+ ...-|+++|-... +... .-+ ..|+|
T Consensus 225 ~~~aa~~l~~~~s~~v~l~~----~~i~~lv~~l~~~l~~ldd-l~~s~~si~~ll~~l~~~~evl~l~~~~n~~~~Lvp 299 (1549)
T KOG0392|consen 225 RSVAAQFLVPAPSIQVKLMV----QKIAKLVHTLWSFLLELDD-LSSSTASIMHLLDELCIENEVLDLFEQQNLEVGLVP 299 (1549)
T ss_pred HHHHHHHhhhhhHHHHhhhH----hHHHHHHHHHHHHHHHhhh-cchhhHHHHHHHHHHhhhHHHHHHHHHhhhhhccch
Confidence 99999988777776643221 2244444444444421111 1111 1111222222110 0000 012 36899
Q ss_pred HHHHHhcCCchhhHHHHHHHHHHHHhcc
Q 002658 210 RICKLLSNQNFMAKASLLPVVGSLSQVG 237 (896)
Q Consensus 210 RL~kLLks~s~kaK~alL~aIgSLA~vg 237 (896)
++...+.|.-+.++.++++.+-.+..+.
T Consensus 300 ~~~p~l~~~i~sv~~a~l~~l~~lle~~ 327 (1549)
T KOG0392|consen 300 RLWPFLRHTISSVRRAALETLAMLLEAD 327 (1549)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999998886554
No 148
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.19 E-value=6.7 Score=48.81 Aligned_cols=212 Identities=12% Similarity=0.122 Sum_probs=135.2
Q ss_pred HHHHHHHHHHHHcC-CCh-h--HHHHHHHHHHHHHhc--CCCCCHHHHHHHHhhhc-----CCCChhhHHHHHHHHHHHH
Q 002658 39 VEMKQKILTSLSKL-ADR-D--THQIAIEDLEKTIQT--LSQESLPMLLNCLYESS-----NDPKPAVKKESVRLLALVC 107 (896)
Q Consensus 39 ~~Lk~rll~~L~KL-sDR-D--T~k~Aa~eLD~La~~--L~pd~Lp~fLs~L~es~-----ss~k~~vRKeAIllLG~IA 107 (896)
.++|..+..++.++ .|. | ++=.+++.|..++.. +.++.|-+|++.+.... .-..-..|-..+.+|+.+.
T Consensus 521 ~e~k~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI 600 (978)
T KOG1993|consen 521 LELKPLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLI 600 (978)
T ss_pred HhHHHHHHHHHHHhcCccccceeehHHHHHHHHhhhhccCChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 35555555555555 444 2 666777888888875 45767777776655442 1112335778899999999
Q ss_pred HHhcccchhhHHHHHHHHHHh--hcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhcC-CHhHH--
Q 002658 108 ELHSELTSTHVTKIISHIVKR--LKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQ-NKGVQ-- 182 (896)
Q Consensus 108 eg~~d~I~P~LpkIL~~Ilrr--LkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~Eq-nk~VQ-- 182 (896)
+.-++.|.||..+|+.++-.. -...++.+|.|...++-.|+.-+-.. ....++ |+-|+++.-.+. .|..+
T Consensus 601 ~r~~e~I~P~~~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~q----S~~~~~-fL~pVIel~~D~~sP~hv~L 675 (978)
T KOG1993|consen 601 ERVSEHIAPYASTIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQ----SFEFYP-FLYPVIELSTDPSSPEHVYL 675 (978)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccC----CccchH-HHHHHHHHhcCCCCCceeeh
Confidence 999999999999999977554 34467899999999999999999322 223454 555666665443 34333
Q ss_pred -HHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHh--ccccCcccHHHHHHHHHHhhCC
Q 002658 183 -SGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQ--VGAIAPQSLEPLLQSIHECLGS 257 (896)
Q Consensus 183 -~gAasALAkIIE~a~d~~~~yL~~LlPRL~kLLks~s~kaK~alL~aIgSLA~--vga~~~pyle~lLp~L~e~Lsd 257 (896)
+-+..-...++++.+.. .|-|-.|+|.|..++....... ..++..|.|-+- .+.....|+..+...+.+.+.+
T Consensus 676 ~EDgmeLW~~~L~n~~~l-~p~ll~L~p~l~~~iE~ste~L-~t~l~Ii~sYilLd~~~fl~~y~~~i~k~~~~~l~d 751 (978)
T KOG1993|consen 676 LEDGMELWLTTLMNSQKL-TPELLLLFPHLLYIIEQSTENL-PTVLMIISSYILLDNTVFLNDYAFGIFKKLNDLLDD 751 (978)
T ss_pred hhhHHHHHHHHHhccccc-CHHHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566777776443 3445567788887776433322 245666666642 1233456666666666665554
No 149
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=94.18 E-value=1.7 Score=47.81 Aligned_cols=136 Identities=10% Similarity=0.068 Sum_probs=95.7
Q ss_pred CchhHhhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCC---c---hhHHHHHHHHHHHhc--------CCchhhHH
Q 002658 159 NGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPP---V---VAFQKLCARICKLLS--------NQNFMAKA 224 (896)
Q Consensus 159 ~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~a~d~~---~---~yL~~LlPRL~kLLk--------s~s~kaK~ 224 (896)
.+++|+.++|+++..+++..+.+..-+|.||..+++..+... . .+.+-+-+-|.++|- ......=.
T Consensus 113 i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~ 192 (282)
T PF10521_consen 113 ISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQ 192 (282)
T ss_pred HHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHH
Confidence 457899999999999999999999999999999999875444 1 234444455555555 23444445
Q ss_pred HHHHHHHHHHhcc--ccCcccHHHHHHH----HHHhhCC----CCHHHHHHHHHHHHHHHHhcchHHHhhHHHHHHHHHh
Q 002658 225 SLLPVVGSLSQVG--AIAPQSLEPLLQS----IHECLGS----TDWATRKAAADALSALALHSSNLVIDGATSTLTVLEA 294 (896)
Q Consensus 225 alL~aIgSLA~vg--a~~~pyle~lLp~----L~e~Lsd----dDW~lRKaA~EaLgsLA~avGe~L~Py~~~~I~~LE~ 294 (896)
.++.|+-+++.+- ....++...+-.. ++..+.. +...+|...++.|..+...+|-...-|+.+++..|.+
T Consensus 193 ~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~~l~~ 272 (282)
T PF10521_consen 193 AAYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQRIIPVLSQ 272 (282)
T ss_pred HHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 7788888886542 2222333333333 3332221 2589999999999999999998888899999988764
No 150
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.10 E-value=0.53 Score=54.10 Aligned_cols=135 Identities=17% Similarity=0.192 Sum_probs=108.8
Q ss_pred HHHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCC
Q 002658 80 LLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENN 159 (896)
Q Consensus 80 fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~ 159 (896)
.|.-|+..+.+.+..+|+.|+.-|..+...|+..+.-|+-.+++-+..++.|-+..||++....+--+...+.. +..
T Consensus 59 tlkeLl~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~---e~~ 135 (393)
T KOG2149|consen 59 TLKELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACK---EDQ 135 (393)
T ss_pred cHHHHHhhhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcch---hhh
Confidence 36666677778999999999999999999999999999999999999999999999999999888877777732 224
Q ss_pred chhHhhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcC
Q 002658 160 GTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSN 217 (896)
Q Consensus 160 ~~~~~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~a~d~~~~yL~~LlPRL~kLLks 217 (896)
+.++..+++-+..+|..-.+.+|+-++.-|.-+++..++....+.-.+++-+..+++.
T Consensus 136 sp~~~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~~~~~~~~il~n~~d~i~~ 193 (393)
T KOG2149|consen 136 SPMVSLLMPYISSAMTHITPEIQEDSLKFLSLLLERYPDTFSRYASKILENFKDVISK 193 (393)
T ss_pred cchHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHH
Confidence 4667888888888888889999999999999999987665444444455555544443
No 151
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.04 E-value=2.1 Score=48.75 Aligned_cols=175 Identities=14% Similarity=0.180 Sum_probs=117.7
Q ss_pred HHHHHHcC-CChhHHHHHHHHHHHHHhcCCCC-------CHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhccc---
Q 002658 45 ILTSLSKL-ADRDTHQIAIEDLEKTIQTLSQE-------SLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSEL--- 113 (896)
Q Consensus 45 ll~~L~KL-sDRDT~k~Aa~eLD~La~~L~pd-------~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~--- 113 (896)
....++.. .|-+.+.-|++.|.-++++++.. .+.+++. ..++.++.+|+.|...+|.++.--+..
T Consensus 86 ~~~~~~~~s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~----~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~ 161 (342)
T KOG2160|consen 86 PIVILNSSSVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLG----YLENSDAELRELAARVIGTAVQNNPKSQEQ 161 (342)
T ss_pred hhhccCcccCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHH----HhcCCcHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 45556655 58889999999999999987531 1333333 556788999999999999999876543
Q ss_pred c--hhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHhhh-----HHHHHHHHhc--CCHhHHHH
Q 002658 114 T--STHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLF-----VKPLFEAMME--QNKGVQSG 184 (896)
Q Consensus 114 I--~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~l-----L~pL~eaL~E--qnk~VQ~g 184 (896)
+ .-.|.+++..+. +|.+-.||..+..+++.|.++- .++ ...| ..-|.++|.. .++..|.-
T Consensus 162 v~E~~~L~~Ll~~ls---~~~~~~~r~kaL~AissLIRn~-~~g-------~~~fl~~~G~~~L~~vl~~~~~~~~lkrK 230 (342)
T KOG2160|consen 162 VIELGALSKLLKILS---SDDPNTVRTKALFAISSLIRNN-KPG-------QDEFLKLNGYQVLRDVLQSNNTSVKLKRK 230 (342)
T ss_pred HHHcccHHHHHHHHc---cCCCchHHHHHHHHHHHHHhcC-cHH-------HHHHHhcCCHHHHHHHHHcCCcchHHHHH
Confidence 2 124555555443 4555688899999999988877 322 1222 3467777866 56778888
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHH
Q 002658 185 AAMCMAKMVECASDPPVVAFQKLCARICKLLSN-QNFMAKASLLPVVGSLS 234 (896)
Q Consensus 185 AasALAkIIE~a~d~~~~yL~~LlPRL~kLLks-~s~kaK~alL~aIgSLA 234 (896)
|+.-++.+++.........-..+.++....+.. .++.++..++.++.++.
T Consensus 231 ~~~Ll~~Ll~~~~s~~d~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l 281 (342)
T KOG2160|consen 231 ALFLLSLLLQEDKSDEDIASSLGFQRVLENLISSLDFEVNEAALTALLSLL 281 (342)
T ss_pred HHHHHHHHHHhhhhhhhHHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHH
Confidence 888899999875322222333455555555543 46677778888777765
No 152
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.02 E-value=1.4 Score=52.69 Aligned_cols=165 Identities=13% Similarity=0.103 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHHHcC----CChh-----------HHHHHHHHHHHHHhcCCCCC-HHHHHHHHhhhcCCCChhhHHHHHH
Q 002658 38 MVEMKQKILTSLSKL----ADRD-----------THQIAIEDLEKTIQTLSQES-LPMLLNCLYESSNDPKPAVKKESVR 101 (896)
Q Consensus 38 ~~~Lk~rll~~L~KL----sDRD-----------T~k~Aa~eLD~La~~L~pd~-Lp~fLs~L~es~ss~k~~vRKeAIl 101 (896)
-....+|++.+|-.- +|++ .+--..+.|.-++--++.+. +.....-+.+ ++..|..=++++.
T Consensus 334 frpy~~rLvs~l~~h~qlp~~~~~l~Ee~~~f~~fR~~v~dvl~Dv~~iigs~e~lk~~~~~l~e--~~~~We~~EAaLF 411 (559)
T KOG2081|consen 334 FRPYFLRLVSLLKRHVQLPPDQFDLPEEESEFFEFRLKVGDVLKDVAFIIGSDECLKQMYIRLKE--NNASWEEVEAALF 411 (559)
T ss_pred hHHHHHHHHHHHHHHccCCCccccCccchhHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHcc--CCCchHHHHHHHH
Confidence 345667777777332 2222 33334444444444455433 4444444443 4567999999999
Q ss_pred HHHHHHHHhcccchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHH--hcCCH
Q 002658 102 LLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAM--MEQNK 179 (896)
Q Consensus 102 lLG~IAeg~~d~I~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL--~Eqnk 179 (896)
.|.+++.-....-.+-||+|+..|.+. +....||.+++-.+|.|.+|+- .+++++.++.+.+ +-+.+
T Consensus 412 ~l~~~~~~~~~~e~~i~pevl~~i~nl--p~Q~~~~~ts~ll~g~~~ew~~---------~~p~~le~v~~~~~~~~~~~ 480 (559)
T KOG2081|consen 412 ILRAVAKNVSPEENTIMPEVLKLICNL--PEQAPLRYTSILLLGEYSEWVE---------QHPELLEPVLRYIRQGLQLK 480 (559)
T ss_pred HHHHHhccCCccccchHHHHHHHHhCC--ccchhHHHHHHHHHHHHHHHHH---------hCcHHHHHHHHHHHHHhhhc
Confidence 998888654444444455555544332 1234599999999999999993 3566777777666 23445
Q ss_pred hHHHHHHHHHHHHHHhcCCCC---chhHHHHHHHHHHHh
Q 002658 180 GVQSGAAMCMAKMVECASDPP---VVAFQKLCARICKLL 215 (896)
Q Consensus 180 ~VQ~gAasALAkIIE~a~d~~---~~yL~~LlPRL~kLL 215 (896)
..+.+|+.|+..+|..+.... .+++..|+--|...+
T Consensus 481 ~~as~~a~~~~~i~~~c~~~~~~l~~~~~~l~~~l~~~~ 519 (559)
T KOG2081|consen 481 RLASAAALAFHRICSACRVQMTCLIPSLLELIRSLDSTQ 519 (559)
T ss_pred chhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHh
Confidence 589999999999998864433 244444444444333
No 153
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=93.92 E-value=6.9 Score=43.24 Aligned_cols=131 Identities=15% Similarity=0.154 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHhcccchh--hHHHHHHHHH-HhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHh
Q 002658 99 SVRLLALVCELHSELTST--HVTKIISHIV-KRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMM 175 (896)
Q Consensus 99 AIllLG~IAeg~~d~I~P--~LpkIL~~Il-rrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~ 175 (896)
|+..+..+.+-....+.| .|..|+..|+ +.++.+++.||..+..++|-++-.-. +.....++.++..+.
T Consensus 3 cL~i~~~lL~~~~~~~~~~~~l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~--------~~a~~~l~l~~~~~~ 74 (298)
T PF12719_consen 3 CLSITQSLLENVSSSLSPNISLESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDK--------ELAKEHLPLFLQALQ 74 (298)
T ss_pred HHHHHHHHHHhccccCCCcchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCh--------HHHHHHHHHHHHHHH
Confidence 444555555555544544 5668886555 99999999999999999997765441 335566777777775
Q ss_pred cCCHhHHHHHHHHHHHHHHhcCCCCc---------hhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcc
Q 002658 176 EQNKGVQSGAAMCMAKMVECASDPPV---------VAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVG 237 (896)
Q Consensus 176 Eqnk~VQ~gAasALAkIIE~a~d~~~---------~yL~~LlPRL~kLLks~s~kaK~alL~aIgSLA~vg 237 (896)
.....++..|+.|+--++---+.... ..-..++.-|.+.|.+.+..++..+...+.-+.-.|
T Consensus 75 ~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~ 145 (298)
T PF12719_consen 75 KDDEEVKITALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSG 145 (298)
T ss_pred hCCHHHHHHHHHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcC
Confidence 55888998887777666543221111 123467778888888888788888888888876544
No 154
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=93.91 E-value=2.7 Score=49.45 Aligned_cols=222 Identities=15% Similarity=0.190 Sum_probs=134.2
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHH-HHhhhcCCCChhhHHHHHHHHHHHHHHhccc-chhhHHHHHHHHHHhhcCCC-
Q 002658 57 THQIAIEDLEKTIQTLSQESLPMLLN-CLYESSNDPKPAVKKESVRLLALVCELHSEL-TSTHVTKIISHIVKRLKDSD- 133 (896)
Q Consensus 57 T~k~Aa~eLD~La~~L~pd~Lp~fLs-~L~es~ss~k~~vRKeAIllLG~IAeg~~d~-I~P~LpkIL~~IlrrLkDpD- 133 (896)
++-.|+..|=.+...++.+.+..++. .|...+++.-...|-.+.+++..-+..+... ..+..+.+.+.+...|.++.
T Consensus 103 ~Ri~aA~ALG~l~~~~~~~~~~~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~L~~~~~ 182 (441)
T PF12054_consen 103 ARIAAAKALGLLLSYWPESSLQEIFQPLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEILENPEP 182 (441)
T ss_pred HHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHHHcCCCC
Confidence 56678888888888887666767766 4777777877888888888888888877644 22224555666666666443
Q ss_pred ----------hHHHHHHHHHHHHHHHHHh-------------c--cc---------------------------------
Q 002658 134 ----------SGMKEACRDSIGSLSKLYL-------------N--GK--------------------------------- 155 (896)
Q Consensus 134 ----------s~VR~Ac~~aLG~LA~~li-------------~--~~--------------------------------- 155 (896)
..||.-|...+..+..+.. + +.
T Consensus 183 ~~Y~El~~~l~~lr~ec~~Ll~~f~~~g~~~~~klp~l~~~v~~~~~~~p~~fsi~~A~~v~~~~~~~l~~~l~~~~k~~ 262 (441)
T PF12054_consen 183 PYYDELVPSLKRLRTECQQLLATFRDVGKVPPSKLPSLPVVVQGEPEAGPEAFSIEQAEKVVGEDFEKLKKSLSPSQKLS 262 (441)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhccccccccccccccCCccCCHHHHHHHHHHHHHHHHHhcCCcccch
Confidence 3556666666666666554 1 00
Q ss_pred ----------------------------------------ccCCchhHhhhHHHHHHHH-hcCCHhHHHHHHHHHHHHHH
Q 002658 156 ----------------------------------------EENNGTVVGLFVKPLFEAM-MEQNKGVQSGAAMCMAKMVE 194 (896)
Q Consensus 156 ----------------------------------------~e~~~~~~~~lL~pL~eaL-~Eqnk~VQ~gAasALAkIIE 194 (896)
+....+.+..+++||++.+ .|.|...|.-||.+|+.+|+
T Consensus 263 a~~~Le~~r~~l~~ai~~~~~~~~~~~~~V~Aa~A~A~v~l~~lP~KLnPiIrpLMdSIK~Een~~LQ~rsA~slA~Li~ 342 (441)
T PF12054_consen 263 ALQALEDRRQRLQAAIEEAKEVQTSRDVRVLAAAASALVALGGLPKKLNPIIRPLMDSIKREENELLQQRSAESLARLIQ 342 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHhhccccHHHHHHHHHHHHHHHH
Confidence 0000023677888888888 68899999999999999998
Q ss_pred hcCCCCchhHHHHHHHHHHHhcC-----CchhhHHHHHHHHHHHHhccccCcccHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 002658 195 CASDPPVVAFQKLCARICKLLSN-----QNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADA 269 (896)
Q Consensus 195 ~a~d~~~~yL~~LlPRL~kLLks-----~s~kaK~alL~aIgSLA~vga~~~pyle~lLp~L~e~LsddDW~lRKaA~Ea 269 (896)
-+-..-..--++|+-.|+.+|=. |.|.......+-|-++..-..... .. ...-.+--...-.=.|+.|..+
T Consensus 343 ~~~~rkp~PndKIvkNLc~flC~D~seTP~~~~~~~~~~gILsl~k~~~~~~-~~---~~~~~~~~~~~a~I~RrGA~~a 418 (441)
T PF12054_consen 343 LCVDRKPCPNDKIVKNLCTFLCVDTSETPEFSHNVDKKDGILSLRKEEDKAD-HA---DAASEEREQKEARIQRRGAELA 418 (441)
T ss_pred HHhCCCCCCcHHHHHHHhhhhccCcccCCCCCCCcchhhcccchhhhccccc-cc---ccccchhhhhhhHHHhcCHHHH
Confidence 75432223456777777777732 233322223333444432110000 00 0000000111123368899999
Q ss_pred HHHHHHhcchHHH
Q 002658 270 LSALALHSSNLVI 282 (896)
Q Consensus 270 LgsLA~avGe~L~ 282 (896)
|..|+...|+.+-
T Consensus 419 L~~l~~~FG~~Lf 431 (441)
T PF12054_consen 419 LEQLAKRFGSSLF 431 (441)
T ss_pred HHHHHHHHhHHHH
Confidence 9999999995443
No 155
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=93.87 E-value=1.8 Score=48.54 Aligned_cols=212 Identities=14% Similarity=0.167 Sum_probs=145.4
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhcCCCCC----HHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccc
Q 002658 39 VEMKQKILTSLSKLADRDTHQIAIEDLEKTIQTLSQES----LPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELT 114 (896)
Q Consensus 39 ~~Lk~rll~~L~KLsDRDT~k~Aa~eLD~La~~L~pd~----Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I 114 (896)
..+=+|+-+||+-.-=.-.++-|++.-+.|-+.++++. ++.|++-|+..++.....+|...+.++....---+..+
T Consensus 53 ~~v~krLaqCL~P~LPsGVH~KaLevY~~IF~~ig~~~L~~dl~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~~L 132 (307)
T PF04118_consen 53 LQVSKRLAQCLNPALPSGVHQKALEVYEYIFERIGPDGLAQDLPIYSPGLFPLFSYASIQVKPQLLDIYEKYYLPLGPAL 132 (307)
T ss_pred HHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCHHHHHhhcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccHHH
Confidence 34567888999766323388889998888888887544 77777777777777778899999999988877666778
Q ss_pred hhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhcCCHhHHHHHHHHHHHHHH
Q 002658 115 STHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVE 194 (896)
Q Consensus 115 ~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE 194 (896)
.|.++-++..++.+|.|..+.+-+-+...+-.+...+ + -..|...|+.++. .++.+-.+|..-|.+-.-
T Consensus 133 ~p~l~~li~slLpGLede~sE~~~~~~~ll~~l~~~v---~-------~~~F~~~lwl~ii-~sp~~Rl~al~~l~~~l~ 201 (307)
T PF04118_consen 133 RPCLKGLILSLLPGLEDEGSEFFDRTLKLLDKLKEAV---G-------DKYFWQCLWLCII-TSPSRRLGALNYLLRRLP 201 (307)
T ss_pred HHHHHHHHHHhccccccCCchHHHHHHHHHHHHHHhc---C-------hhHHHHHHHHHHh-cCcchhHHHHHHHHHhCC
Confidence 9999999999999999999999999999999998887 2 1246677777775 455555444443333222
Q ss_pred hcC------------CCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcc-c-----cCcccHHHHHHHHHHhhC
Q 002658 195 CAS------------DPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVG-A-----IAPQSLEPLLQSIHECLG 256 (896)
Q Consensus 195 ~a~------------d~~~~yL~~LlPRL~kLLks~s~kaK~alL~aIgSLA~vg-a-----~~~pyle~lLp~L~e~Ls 256 (896)
... ....+--.-|+.-|+..|++.+.-++-..|+.+-+-.... . ........++......+-
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~Llv~al~~~L~D~~iLVqR~~LDlLl~~~PL~s~~~~~~~~~~d~~~Lv~a~l~~~l 281 (307)
T PF04118_consen 202 KFQNDELSLSSEEQEYCLGPDPGLLVRALCACLEDENILVQRGFLDLLLSHFPLDSPVLQSLLSPEDKELLVMAALKVVL 281 (307)
T ss_pred cccccccccchHHHHHhcCCCccHHHHHHHHHhCCchHHHHHHHHHHHHHhCCCCCcchhhhCCHHHHHHHHHHHHHHHh
Confidence 111 0001113347777888888888888888888877765433 1 124444455544444443
Q ss_pred CCCHH
Q 002658 257 STDWA 261 (896)
Q Consensus 257 ddDW~ 261 (896)
-.|+.
T Consensus 282 rrDmS 286 (307)
T PF04118_consen 282 RRDMS 286 (307)
T ss_pred Hhhhh
Confidence 34443
No 156
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=93.72 E-value=1.8 Score=47.60 Aligned_cols=158 Identities=13% Similarity=0.177 Sum_probs=106.2
Q ss_pred HHHHHHHHHhc--ccchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhccc---ccCCchhHhhhHHHHHHHHh
Q 002658 101 RLLALVCELHS--ELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGK---EENNGTVVGLFVKPLFEAMM 175 (896)
Q Consensus 101 llLG~IAeg~~--d~I~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~---~e~~~~~~~~lL~pL~eaL~ 175 (896)
..|.-++..+- ..+..|++-|+|.|+..+-|.++.+|-..|.++..|...+.... .. .......|-+.|+..|.
T Consensus 98 ~~l~w~v~~~~~~~~i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~-~tGl~~v~~~al~~~L~ 176 (282)
T PF10521_consen 98 HVLSWIVLSQLDRPWISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILR-RTGLFSVFEDALFPCLY 176 (282)
T ss_pred HHHHHHHHhcCCcchHHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHH-HcChHHHHHHHHHHHhh
Confidence 45555555333 34889999999999999999999999999999999998772211 00 00124444555555554
Q ss_pred --------cCCHhHHHHHHHHHHHHHHhcCC-CC---chhHHHHHHH-HHHHhcCC----chhhHHHHHHHHHHHHh-cc
Q 002658 176 --------EQNKGVQSGAAMCMAKMVECASD-PP---VVAFQKLCAR-ICKLLSNQ----NFMAKASLLPVVGSLSQ-VG 237 (896)
Q Consensus 176 --------Eqnk~VQ~gAasALAkIIE~a~d-~~---~~yL~~LlPR-L~kLLks~----s~kaK~alL~aIgSLA~-vg 237 (896)
++...+...|.-||..++..... .. ...+.+++-. ++.-+.+. +..+...++..+..++. .|
T Consensus 177 ~LP~~tp~~~s~~Ll~~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lG 256 (282)
T PF10521_consen 177 YLPPITPEDESLELLQAAYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELG 256 (282)
T ss_pred cCCCCCCchhhHHHHHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhc
Confidence 45667777888888888765311 11 1234444433 44444432 46667788888888864 56
Q ss_pred ccCcccHHHHHHHHHHhhCCCC
Q 002658 238 AIAPQSLEPLLQSIHECLGSTD 259 (896)
Q Consensus 238 a~~~pyle~lLp~L~e~LsddD 259 (896)
-....|+..++|.|.+.+.+.+
T Consensus 257 i~~~~hL~rii~~l~~~l~npf 278 (282)
T PF10521_consen 257 ISSVKHLQRIIPVLSQILENPF 278 (282)
T ss_pred cHHHHHHHHHHHHHHHHhcCCC
Confidence 5667899999999999988754
No 157
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=93.58 E-value=1.2 Score=49.51 Aligned_cols=216 Identities=13% Similarity=0.103 Sum_probs=118.6
Q ss_pred HHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccchhhHH-------HHHHHHHHhhcCCChHHHHHHHHHHHHHHHH
Q 002658 78 PMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVT-------KIISHIVKRLKDSDSGMKEACRDSIGSLSKL 150 (896)
Q Consensus 78 p~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I~P~Lp-------kIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~ 150 (896)
..|+..|... +.+..+.+..+-+++.+....+....-++. .....+++.|.-+|..+...++..++.|+.+
T Consensus 58 ~~~l~lL~~~--~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~ 135 (312)
T PF03224_consen 58 SLFLNLLNKL--SSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQ 135 (312)
T ss_dssp ----HHHHHH-----HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHc--cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHc
Confidence 3444444433 456778888888888888877644221111 2556677788889999999999999999888
Q ss_pred HhcccccCCchhHhhhHHHHHHHHhc----CCHhHHHHHHHHHHHHHHhc--CCCCchhHHHHHHHHHHHh------c-C
Q 002658 151 YLNGKEENNGTVVGLFVKPLFEAMME----QNKGVQSGAAMCMAKMVECA--SDPPVVAFQKLCARICKLL------S-N 217 (896)
Q Consensus 151 li~~~~e~~~~~~~~lL~pL~eaL~E----qnk~VQ~gAasALAkIIE~a--~d~~~~yL~~LlPRL~kLL------k-s 217 (896)
..... ......+++.++..|.. .+..+|..|+.||+.+...- +..... ...++.|..+| . .
T Consensus 136 ~~~~~----~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~--~~~v~~l~~iL~~~~~~~~~ 209 (312)
T PF03224_consen 136 GPKRS----EKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWK--SNGVSPLFDILRKQATNSNS 209 (312)
T ss_dssp TTT------HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHT--HHHHHHHHHHHH--------
T ss_pred CCccc----cchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHh--cCcHHHHHHHHHhhcccCCC
Confidence 73221 12224678888888854 34567889999999998642 111111 35666667777 2 2
Q ss_pred CchhhHHHHHHHHHHHH-h---ccccCcccHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHHHHhcchHHHhh-----HHH
Q 002658 218 QNFMAKASLLPVVGSLS-Q---VGAIAPQSLEPLLQSIHECLGST-DWATRKAAADALSALALHSSNLVIDG-----ATS 287 (896)
Q Consensus 218 ~s~kaK~alL~aIgSLA-~---vga~~~pyle~lLp~L~e~Lsdd-DW~lRKaA~EaLgsLA~avGe~L~Py-----~~~ 287 (896)
.+++..-.++-|+=-+. . ++.....| ++|.|.+.+... .-.+=+.++-+|..++....+.+.+- +..
T Consensus 210 ~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~---~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~ 286 (312)
T PF03224_consen 210 SGIQLQYQALLCLWLLSFEPEIAEELNKKY---LIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLK 286 (312)
T ss_dssp -HHHHHHHHHHHHHHHTTSHHHHHHHHTTS---HHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHH
T ss_pred CchhHHHHHHHHHHHHhcCHHHHHHHhccc---hHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHH
Confidence 35555555555555442 1 11222334 888888887653 22344455666777766666434433 345
Q ss_pred HHHHHHhhhcCCChhhHH
Q 002658 288 TLTVLEACRFDKIKPVRD 305 (896)
Q Consensus 288 ~I~~LE~~RfDKvKpVRD 305 (896)
+++.|+..++ .++.+.|
T Consensus 287 ~l~~L~~rk~-~Dedl~e 303 (312)
T PF03224_consen 287 TLQNLSERKW-SDEDLTE 303 (312)
T ss_dssp HHHHHHSS---SSHHHHH
T ss_pred HHHHHhcCCC-CCHHHHH
Confidence 5666666666 4443443
No 158
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=93.55 E-value=2.8 Score=49.49 Aligned_cols=270 Identities=16% Similarity=0.140 Sum_probs=160.9
Q ss_pred CcchhhhHhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhcCCCCC-----HHHHHHHHhhhcCCCChhhHHHHHHHH
Q 002658 29 SSSLSSHLAMVEMKQKILTSLSKLADRDTHQIAIEDLEKTIQTLSQES-----LPMLLNCLYESSNDPKPAVKKESVRLL 103 (896)
Q Consensus 29 ~~~~s~~~~~~~Lk~rll~~L~KLsDRDT~k~Aa~eLD~La~~L~pd~-----Lp~fLs~L~es~ss~k~~vRKeAIllL 103 (896)
+-+.+..-...++-+-++.+|..=....+-.+.+..|..+++.-|=++ +--|..+|...+.+.++.+|-.++.++
T Consensus 95 pf~v~~a~si~~~~r~l~~~l~~e~~~~~~tq~~kcla~lv~~~p~~~l~~~~~~~~~~~ik~~i~~~d~~v~vs~l~~~ 174 (728)
T KOG4535|consen 95 PFSVMIACSIRELHRCLLLALVAESSSQTVTQIIKCLANLVSNAPYDRLKLSLLTKVWNQIKPYIRHKDVNVRVSSLTLL 174 (728)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHH
Confidence 455566666778888888888666556688888889999988654333 334456666667888999999999999
Q ss_pred HHHHHHhcccc----------------hhhHHHHHHHHHHhhcCCC----------------------------------
Q 002658 104 ALVCELHSELT----------------STHVTKIISHIVKRLKDSD---------------------------------- 133 (896)
Q Consensus 104 G~IAeg~~d~I----------------~P~LpkIL~~IlrrLkDpD---------------------------------- 133 (896)
|+++..|.-.. .||+.. +---+.|.|.+
T Consensus 175 ~~~v~t~~~~pei~~~~~~~~s~~n~~~~h~s~--~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~i~~~~~i~~~~~~~s 252 (728)
T KOG4535|consen 175 GAIVSTHAPLPEVQLLLQQPCSSSNSATPHLSP--PDWWKKLPAGPSLEETSVSSPKGSSEPCWLIRLCISIVVLPKEDS 252 (728)
T ss_pred HHHHhcCCCCHHHHHHhcCCCccccccCCCCCC--hHHHHhcCCCchhhhhccCCccCCCCCcceeeeeeeeeecCCccc
Confidence 99988754210 011100 01111122211
Q ss_pred ----------------hHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcC
Q 002658 134 ----------------SGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECAS 197 (896)
Q Consensus 134 ----------------s~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~a~ 197 (896)
+.||--|..++..++.++ +. -..++.++...+...+.+..+.+|..++.||.++...+.
T Consensus 253 ~~~~~~~~~~~~~~~ps~~rle~~qvl~~~a~~~---~~--~~~~~~~l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv 327 (728)
T KOG4535|consen 253 CSGSDAGSAAGSTYEPSPMRLEALQVLTLLARYF---SM--TQAYLMELGRVICKCMGEADPSIQLHGAKLLEELGTGLI 327 (728)
T ss_pred cchhhHHhhhcCccCCchhHHHHHHHHHHHHHHH---HH--HHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHHHHHh
Confidence 578888999999999998 21 123456666677777788999999999999999987752
Q ss_pred --CCCc---hhHHHHHHHHHHHhc--------CCchhhHHHHHHHHHHHHhcc-ccCcccHH-HHHHHHHHhhCCCCHHH
Q 002658 198 --DPPV---VAFQKLCARICKLLS--------NQNFMAKASLLPVVGSLSQVG-AIAPQSLE-PLLQSIHECLGSTDWAT 262 (896)
Q Consensus 198 --d~~~---~yL~~LlPRL~kLLk--------s~s~kaK~alL~aIgSLA~vg-a~~~pyle-~lLp~L~e~LsddDW~l 262 (896)
+.+. .-+..=+-+++-+.+ +.++..+.++-+++..+.... ..++..-. ..+..+..|-.+++.-+
T Consensus 328 ~~~~P~~~k~~~q~~~fw~~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T~~~~Fl~GC~d~~~~lv 407 (728)
T KOG4535|consen 328 QQYKPDSTKAPDQRAPFWTMMLNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPNDRQTLCITFLLGCNDSKNRLV 407 (728)
T ss_pred hhcCCCcccchhhhccHHHHHccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcchhhhHHHHhcccchHHHHH
Confidence 2221 112222223332222 223333443333333322111 12222121 23334555665556667
Q ss_pred HHHHHHHHHHHHHhcc-hHHHhhHHHHHHHHHhhhcCCChhhHH
Q 002658 263 RKAAADALSALALHSS-NLVIDGATSTLTVLEACRFDKIKPVRD 305 (896)
Q Consensus 263 RKaA~EaLgsLA~avG-e~L~Py~~~~I~~LE~~RfDKvKpVRD 305 (896)
|.+|+.+++.+..+-+ -.-.-|...|.+.+....+||.=-+|+
T Consensus 408 ~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~ 451 (728)
T KOG4535|consen 408 KAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRA 451 (728)
T ss_pred HHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHH
Confidence 7777777776666666 444556677777776777775544443
No 159
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.48 E-value=2.7 Score=51.48 Aligned_cols=156 Identities=8% Similarity=0.145 Sum_probs=111.1
Q ss_pred HHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhc-ccchh----hHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHH
Q 002658 77 LPMLLNCLYESSNDPKPAVKKESVRLLALVCELHS-ELTST----HVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLY 151 (896)
Q Consensus 77 Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~-d~I~P----~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~l 151 (896)
+..+=++|...++-.+..||..|..+|=..--.-+ |.-.. -|.+=.-.+...|.|+-|+||+.+...+-.+...+
T Consensus 172 ~rL~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~f 251 (1005)
T KOG1949|consen 172 YRLYKPILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKF 251 (1005)
T ss_pred HHHHhHHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHH
Confidence 34445677777788899999998888754432222 22223 34444457888899999999999988777666544
Q ss_pred hcccccCCchhHhhhHHHHHHHH-hcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHH
Q 002658 152 LNGKEENNGTVVGLFVKPLFEAM-MEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVV 230 (896)
Q Consensus 152 i~~~~e~~~~~~~~lL~pL~eaL-~Eqnk~VQ~gAasALAkIIE~a~d~~~~yL~~LlPRL~kLLks~s~kaK~alL~aI 230 (896)
-.-.+ ..++..+|.-+++.| .|..-.|.-+.+.||..+..+ .+..+.|..++|++-..|.+.+.++|.+.++.|
T Consensus 252 We~iP---~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~n--p~sh~~le~~Lpal~~~l~D~se~VRvA~vd~l 326 (1005)
T KOG1949|consen 252 WEMIP---PTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDN--PLSHPLLEQLLPALRYSLHDNSEKVRVAFVDML 326 (1005)
T ss_pred HHHcC---HHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcC--ccchhHHHHHHHhcchhhhccchhHHHHHHHHH
Confidence 22111 255677777788877 355667888888888888764 334578999999999999999999999999988
Q ss_pred HHHHhcc
Q 002658 231 GSLSQVG 237 (896)
Q Consensus 231 gSLA~vg 237 (896)
.-+-.+.
T Consensus 327 l~ik~vr 333 (1005)
T KOG1949|consen 327 LKIKAVR 333 (1005)
T ss_pred HHHHhhh
Confidence 7764333
No 160
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.38 E-value=6.2 Score=45.02 Aligned_cols=179 Identities=17% Similarity=0.160 Sum_probs=116.3
Q ss_pred hhhHHHHHHHHHHHHHHhcccchh--hHHHHHHH-HHHhhcCC--ChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhH
Q 002658 93 PAVKKESVRLLALVCELHSELTST--HVTKIISH-IVKRLKDS--DSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFV 167 (896)
Q Consensus 93 ~~vRKeAIllLG~IAeg~~d~I~P--~LpkIL~~-IlrrLkDp--Ds~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL 167 (896)
...|+....++....+..-+.+.+ ....++.. ....+.++ +..=+..|.+-|--+++.+ +... .-+--..+
T Consensus 51 ke~~k~~~e~~~~~~e~~k~~~~~~~~~~~~~~~~~~~~~~~~s~~le~ke~ald~Le~lve~i-DnAn---dl~~~ggl 126 (342)
T KOG2160|consen 51 KEDRKWLQELMQAHTEDQKDFVEDMKVISDVMSMIPIVILNSSSVDLEDKEDALDNLEELVEDI-DNAN---DLISLGGL 126 (342)
T ss_pred ccchHHHHHHHHHhhhhhhhhcccchhHHHHHHhhhhhccCcccCCHHHHHHHHHHHHHHHHhh-hhHH---hHhhccCH
Confidence 455677777777766655544322 12222222 34444444 4556889999999999998 4211 01112356
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCchhHH-HHHHHHHHHhcC-CchhhHHHHHHHHHHHHhccccCcccHH
Q 002658 168 KPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQ-KLCARICKLLSN-QNFMAKASLLPVVGSLSQVGAIAPQSLE 245 (896)
Q Consensus 168 ~pL~eaL~Eqnk~VQ~gAasALAkIIE~a~d~~~~yL~-~LlPRL~kLLks-~s~kaK~alL~aIgSLA~vga~~~pyle 245 (896)
.+|+..|...+..+-+.|+..|.+++++-+..-...++ .-+++|+++|.+ +...+|..+|-||++++. .+.|...
T Consensus 127 ~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIR---n~~~g~~ 203 (342)
T KOG2160|consen 127 VPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSDDPNTVRTKALFAISSLIR---NNKPGQD 203 (342)
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccCCCchHHHHHHHHHHHHHh---cCcHHHH
Confidence 77777888889999999999999999976332111222 145777777765 466678889999999984 2222233
Q ss_pred HHH-----HHHHHhhCC--CCHHHHHHHHHHHHHHHHhcc
Q 002658 246 PLL-----QSIHECLGS--TDWATRKAAADALSALALHSS 278 (896)
Q Consensus 246 ~lL-----p~L~e~Lsd--dDW~lRKaA~EaLgsLA~avG 278 (896)
.++ .+|.+++.+ .+..++.-|+..+..++....
T Consensus 204 ~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~ 243 (342)
T KOG2160|consen 204 EFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDK 243 (342)
T ss_pred HHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhh
Confidence 332 456677777 678888889999999988877
No 161
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=93.22 E-value=4.3 Score=49.85 Aligned_cols=172 Identities=12% Similarity=0.104 Sum_probs=111.7
Q ss_pred HHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhcCCCCC-HHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccchh
Q 002658 38 MVEMKQKILTSLSKLADRDTHQIAIEDLEKTIQTLSQES-LPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTST 116 (896)
Q Consensus 38 ~~~Lk~rll~~L~KLsDRDT~k~Aa~eLD~La~~L~pd~-Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I~P 116 (896)
-..+.-.|.-+++.....++.-+.++-+|.|++.++++. ...+|+.|+....+....+.+.++..+..+++.-.....
T Consensus 347 ~~~~~p~l~pi~~~~~~~~~~l~i~e~mdlL~~Kt~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~v- 425 (700)
T KOG2137|consen 347 GPKMLPALKPIYSASDPKQALLFILENMDLLKEKTPPEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPFV- 425 (700)
T ss_pred hhhhhHHHHHHhccCCcccchhhHHhhHHHHHhhCChHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHHH-
Confidence 344555566666665566788899999999999987765 788899999888888899999999999999996652211
Q ss_pred hHHHHHHHHHH-hhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHh
Q 002658 117 HVTKIISHIVK-RLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVEC 195 (896)
Q Consensus 117 ~LpkIL~~Ilr-rLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~ 195 (896)
-..|+|.|-. .++.....|+..|..+++.++..+-+. . .-..+.|+++.+...++.+-.+-....++++=.
T Consensus 426 -k~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD~~------~-v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~ 497 (700)
T KOG2137|consen 426 -KQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLDKA------A-VLDELLPILKCIKTRDPAIVMGFLRIYEALALI 497 (700)
T ss_pred -HHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHHHHH------H-hHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhh
Confidence 1223333332 466677899999999999999777221 2 333555777777656666554433333332221
Q ss_pred cCCCCchhHHHHHHHHHHHhcCC
Q 002658 196 ASDPPVVAFQKLCARICKLLSNQ 218 (896)
Q Consensus 196 a~d~~~~yL~~LlPRL~kLLks~ 218 (896)
......-..+.+||.++.+...+
T Consensus 498 ~~~g~ev~~~~VlPlli~ls~~~ 520 (700)
T KOG2137|consen 498 IYSGVEVMAENVLPLLIPLSVAP 520 (700)
T ss_pred cccceeeehhhhhhhhhhhhhcc
Confidence 12211113455677777555543
No 162
>KOG2842 consensus Interferon-related protein PC4 like [Cytoskeleton]
Probab=93.11 E-value=4 Score=47.03 Aligned_cols=209 Identities=16% Similarity=0.097 Sum_probs=127.6
Q ss_pred CChhhHHHHHHHHHHH--HHHhcccchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHH
Q 002658 91 PKPAVKKESVRLLALV--CELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVK 168 (896)
Q Consensus 91 ~k~~vRKeAIllLG~I--Aeg~~d~I~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~ 168 (896)
...-.|.+++.-+.+. ++..++++.+....+...+.+.|+-|.+.=.-.+.-.+|.++-.+. +++.+++......+
T Consensus 72 k~AktR~~~le~i~lalt~r~l~~fi~e~~~tl~~~~~k~~~k~~sd~q~~a~~~~g~~~vqlg--~~q~~ee~~~t~~~ 149 (427)
T KOG2842|consen 72 KSAKTRQEALEKIYLALTSRHLPEFILENRATLEDLLEKCLNKPKSDEQLLAAALIGLLCVQAG--PGQEEEEWTKTLGP 149 (427)
T ss_pred cchhHHHHHHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhcc--CcchhhHHHhccch
Confidence 3455688877665544 5667788999888999999999999998777777777887777772 23344455555666
Q ss_pred HHHHHHhcCCHhHH--HHHHHHHHHHHHhc-CCCCchhHHHHHHHHHH----HhcCC-----chhhHHHHHHHHHHHH--
Q 002658 169 PLFEAMMEQNKGVQ--SGAAMCMAKMVECA-SDPPVVAFQKLCARICK----LLSNQ-----NFMAKASLLPVVGSLS-- 234 (896)
Q Consensus 169 pL~eaL~Eqnk~VQ--~gAasALAkIIE~a-~d~~~~yL~~LlPRL~k----LLks~-----s~kaK~alL~aIgSLA-- 234 (896)
.++-.+.+++..++ ..+|.||+..|-.+ .+.+.-+.-.+|-.+.- +.... ..+.-..++.|+.+=+
T Consensus 150 ~~~li~~d~s~sv~~r~~ca~sl~v~~l~a~~d~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~ 229 (427)
T KOG2842|consen 150 FLALILDDESASIKARSICATSLGTACLIAEADIIELGSFLICLEESFGAVYLEDDETVVVCACQNLGLLLTCLTAWSLL 229 (427)
T ss_pred HHHHHhhccccchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhcccCCCccccccchhHHHHHHHHHHHHH
Confidence 66666677766666 46777888777654 33222222222222211 22221 1111122233222211
Q ss_pred ---hccccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcc----hHHHhhHHHHHHHHHhhhcCCCh
Q 002658 235 ---QVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSS----NLVIDGATSTLTVLEACRFDKIK 301 (896)
Q Consensus 235 ---~vga~~~pyle~lLp~L~e~LsddDW~lRKaA~EaLgsLA~avG----e~L~Py~~~~I~~LE~~RfDKvK 301 (896)
...+..........|.|-.+|..+.-..|.++.+++..+..... +.+.|-++.+...|.....|..|
T Consensus 230 Lti~~~~~~~~~~~~~~p~i~~lLs~~~vn~r~aa~et~a~l~e~~q~~~~~f~~~d~e~l~~~lr~latdssK 303 (427)
T KOG2842|consen 230 LTICPEALSEQLDAALAPKLPLLLSSERVNERIAAGETLALLFELAQDSEFDFIYPDMEQLLSTLRDLATDSSK 303 (427)
T ss_pred HHcCccchhhHHHHHhccchHHHhccchhhhhhhhhhhHHHHHHHHhcccccccCCCHHHHHHHHHHHHHhhhh
Confidence 10011111222245778888888888899999888887766554 66778889998888877777543
No 163
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=93.03 E-value=17 Score=45.35 Aligned_cols=214 Identities=17% Similarity=0.140 Sum_probs=131.2
Q ss_pred HHHHHHHcC-CChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHH-hcccchhhHHHH
Q 002658 44 KILTSLSKL-ADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCEL-HSELTSTHVTKI 121 (896)
Q Consensus 44 rll~~L~KL-sDRDT~k~Aa~eLD~La~~L~pd~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg-~~d~I~P~LpkI 121 (896)
+.+.+++.- .|.++.++|++-+.+|-. +|+....+...+.... .++.+|--|+..|.-..+- +++.-...+..|
T Consensus 7 qav~a~ndp~vdsa~KqqA~~y~~qiKs--Sp~aw~Icie~l~~~t--s~d~vkf~clqtL~e~vrekyne~nl~elqlv 82 (980)
T KOG2021|consen 7 QAVNAVNDPRVDSATKQQAIEYLNQIKS--SPNAWEICIELLINET--SNDLVKFYCLQTLIELVREKYNEANLNELQLV 82 (980)
T ss_pred HHHHhhCCCcccHHHHHHHHHHHHhhcC--CccHHHHHHHHHHhhc--ccchhhhhhHHHHHHHHHHhhccCCHHHHHHH
Confidence 344444444 789999999999999987 6777888888887544 5688999999988777654 444434344444
Q ss_pred HHHHHHh-----hcCC----ChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhc--CC--HhHHHHHHHH
Q 002658 122 ISHIVKR-----LKDS----DSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMME--QN--KGVQSGAAMC 188 (896)
Q Consensus 122 L~~Ilrr-----LkDp----Ds~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~E--qn--k~VQ~gAasA 188 (896)
--.|..- |.+. -+-|++.+..+++.|.-..-- ..|+.|+.-|+..+.- .. -+.---.+.|
T Consensus 83 R~sv~swlk~qvl~ne~~~~p~fi~Nk~aqvlttLf~~eYp-------~~WnsfF~dlmsv~~~~s~~~~~dfflkvlla 155 (980)
T KOG2021|consen 83 RFSVTSWLKFQVLGNEQTKLPDFIMNKIAQVLTTLFMLEYP-------DCWNSFFDDLMSVFQVDSAISGLDFFLKVLLA 155 (980)
T ss_pred HHHHHHHHHHHHhCcccCCCChHHHHHHHHHHHHHHHHHhh-------hhhHHHHHHHHHHHhcccchhhHHHHHHHHHH
Confidence 4433332 3333 258899999999988766521 3377776666655521 11 1111123333
Q ss_pred HHHHHHh-------------------cCCCCchhHHHHHHHHHHHh---cCC-chhhHHHHHHHHHHHHh---ccccCcc
Q 002658 189 MAKMVEC-------------------ASDPPVVAFQKLCARICKLL---SNQ-NFMAKASLLPVVGSLSQ---VGAIAPQ 242 (896)
Q Consensus 189 LAkIIE~-------------------a~d~~~~yL~~LlPRL~kLL---ks~-s~kaK~alL~aIgSLA~---vga~~~p 242 (896)
+..=+-+ +++.+ +++|+.--..+| ++- ++..-+.+|+|+|+.+. .+-+.
T Consensus 156 IdsEiad~dv~rT~eei~knnliKDaMR~nd---ip~lv~~wyqil~~y~n~~npgl~~~cLdc~g~fVSWIdInLIa-- 230 (980)
T KOG2021|consen 156 IDSEIADQDVIRTKEEILKNNLIKDAMRDND---IPKLVNVWYQILKLYENIVNPGLINSCLDCIGSFVSWIDINLIA-- 230 (980)
T ss_pred hhhHhhhccccCChHHHHHHhhHHHHHHhhh---HHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHhhhhhhhhhh--
Confidence 3221111 12221 333433333333 333 55667789999999863 33111
Q ss_pred cHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHh
Q 002658 243 SLEPLLQSIHECLGSTDWATRKAAADALSALALH 276 (896)
Q Consensus 243 yle~lLp~L~e~LsddDW~lRKaA~EaLgsLA~a 276 (896)
=+.+|+-|.+++.. -++|.+||+|+-+|..-
T Consensus 231 -Nd~f~nLLy~fl~i--eelR~aac~cilaiVsK 261 (980)
T KOG2021|consen 231 -NDYFLNLLYKFLNI--EELRIAACNCILAIVSK 261 (980)
T ss_pred -chhHHHHHHHHHhH--HHHHHHHHHHHHHHHhc
Confidence 35678888888874 67999999999887753
No 164
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=92.98 E-value=23 Score=46.90 Aligned_cols=270 Identities=14% Similarity=0.078 Sum_probs=150.9
Q ss_pred cCCCCCCCCCcchhhhHhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHhhh--cCCCChhhHH
Q 002658 20 QSSSANASRSSSLSSHLAMVEMKQKILTSLSKLADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYES--SNDPKPAVKK 97 (896)
Q Consensus 20 ~~~~~~~~~~~~~s~~~~~~~Lk~rll~~L~KLsDRDT~k~Aa~eLD~La~~L~pd~Lp~fLs~L~es--~ss~k~~vRK 97 (896)
|..+.-|.++.-+-+..++.+.-..+..||+.+.-. + .-.+ .|.+|..+|... +.+++-.+|-
T Consensus 4 ~~~~~g~~~~~~~~s~~ell~rLk~l~~~l~~~~qd-~--~~~~------------~~~pl~~~l~~~~~L~h~d~dvrl 68 (1266)
T KOG1525|consen 4 QFYPPGCLTSLNPISKDELLKRLKKLANCLASLDQD-N--LDLA------------SLLPLADHLIKDFLLKHKDKDVRL 68 (1266)
T ss_pred cccCCCCccccCcccHHHHHHHHHHHHHHHhhcccC-c--hhHH------------HHHHHHHHHhhHHHhcCCCcChhH
Confidence 445567888888888888888888999999988422 2 2222 233333333222 4677777888
Q ss_pred HHHHHHHHHHHHhc-cc--chhhHHHHHHHHHHh---hcCCCh-HH--HHHHHHHHHHHHHHHhcccccCCchhHhhhHH
Q 002658 98 ESVRLLALVCELHS-EL--TSTHVTKIISHIVKR---LKDSDS-GM--KEACRDSIGSLSKLYLNGKEENNGTVVGLFVK 168 (896)
Q Consensus 98 eAIllLG~IAeg~~-d~--I~P~LpkIL~~Ilrr---LkDpDs-~V--R~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~ 168 (896)
-...++..|-+.|. +. ..++|..|..+|++. |.|..+ .. |---.+++..+--.++= ..++-.+.+.+++.
T Consensus 69 lvacCvseilRi~aPeaPy~~~~lkdIf~~~~~q~~gL~d~~sp~f~r~~~lletl~~~k~~l~~-~l~d~~e~~~~~f~ 147 (1266)
T KOG1525|consen 69 LVACCVSEILRIYAPEAPYTDEQLKDIFQLILSQFSGLGDVESPYFKRYFYLLETLAKVKFCLLM-LLEDCQELVHELFR 147 (1266)
T ss_pred HHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHhHHHhee-eccchHHHHHHHHH
Confidence 87778888888776 33 345777777777654 666542 11 22223333333311110 01112244555555
Q ss_pred HHHHHHh-cCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhc-----------
Q 002658 169 PLFEAMM-EQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQV----------- 236 (896)
Q Consensus 169 pL~eaL~-Eqnk~VQ~gAasALAkIIE~a~d~~~~yL~~LlPRL~kLLks~s~kaK~alL~aIgSLA~v----------- 236 (896)
.+|+.+. ...+.|-. -..-+-.++........+.|+-|+-.|++--.+..-.++..+-++|-.++..
T Consensus 148 ~f~d~~~~~~~~~v~~-~~~i~~~li~e~d~v~~e~L~~ll~~lv~~~~~~~~~a~~la~~li~~~a~~~~~~i~~f~~~ 226 (1266)
T KOG1525|consen 148 TFFDLARKGHPKKVFN-MLDIAIMLITEEDTVQSELLDVLLENLVKPGRDTIKEADKLASDLIERCADNLEDTIANFLNS 226 (1266)
T ss_pred HHHHHHhccccHHHHH-HHHHHHHHHHhhccchHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHhhhhhchhHHHHHHH
Confidence 5555552 22222222 1111222222233333445555555555444333333332222222221100
Q ss_pred ---c--------------------ccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcchHHHhhHHHHHHHHH
Q 002658 237 ---G--------------------AIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSSNLVIDGATSTLTVLE 293 (896)
Q Consensus 237 ---g--------------------a~~~pyle~lLp~L~e~LsddDW~lRKaA~EaLgsLA~avGe~L~Py~~~~I~~LE 293 (896)
+ -..+.-+-.++|.|..-|..++-..|+.|...+|.|-..-+..+..-.+++-..+.
T Consensus 227 ~~~~~~s~~~~~~~~~he~i~~L~~~~p~ll~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl 306 (1266)
T KOG1525|consen 227 CLTEYKSRQSSLKIKYHELILELWRIAPQLLLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFL 306 (1266)
T ss_pred HHhhccccccchhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHH
Confidence 0 01223344566667777888999999999999999988888666555688888888
Q ss_pred hhhcCCChhhHHH
Q 002658 294 ACRFDKIKPVRDS 306 (896)
Q Consensus 294 ~~RfDKvKpVRDa 306 (896)
..-.|+..+||=.
T Consensus 307 ~r~~D~~~~vR~~ 319 (1266)
T KOG1525|consen 307 GRFNDISVEVRME 319 (1266)
T ss_pred HHhccCChhhhhh
Confidence 8889999989955
No 165
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=92.97 E-value=0.93 Score=53.26 Aligned_cols=204 Identities=15% Similarity=0.176 Sum_probs=130.4
Q ss_pred cCCCChhhHHHHHHHHHHHHHHhccc-chhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhccccc---CCchhH
Q 002658 88 SNDPKPAVKKESVRLLALVCELHSEL-TSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEE---NNGTVV 163 (896)
Q Consensus 88 ~ss~k~~vRKeAIllLG~IAeg~~d~-I~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e---~~~~~~ 163 (896)
.++.+..+|.+|++++++.+-.++-. ..-+...-..-|+..|.|..-.+|.-+.|++|.|...++...+. ......
T Consensus 400 ~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~s 479 (728)
T KOG4535|consen 400 NDSKNRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFS 479 (728)
T ss_pred cchHHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHH
Confidence 35667789999999999887755533 45566666778888999999999999999999999999764211 011223
Q ss_pred hhhHHHHHHHHh---cCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHH-HHHHhcC----CchhhHHHHHHHHHHHHh
Q 002658 164 GLFVKPLFEAMM---EQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCAR-ICKLLSN----QNFMAKASLLPVVGSLSQ 235 (896)
Q Consensus 164 ~~lL~pL~eaL~---Eqnk~VQ~gAasALAkIIE~a~d~~~~yL~~LlPR-L~kLLks----~s~kaK~alL~aIgSLA~ 235 (896)
..++..++.+-. ..+-.|..-|+.+|..+.+-.......-+..++.- +.+++.. ..+++|-.+--+||-++.
T Consensus 480 g~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfk 559 (728)
T KOG4535|consen 480 GLLLLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFK 559 (728)
T ss_pred HHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhc
Confidence 333333333321 23566888888888887775432222223333322 2222221 267888877778888875
Q ss_pred cccc---CcccHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHHHHhcc--hHHHhhHHHHHHH
Q 002658 236 VGAI---APQSLEPLLQSIHECLGS-TDWATRKAAADALSALALHSS--NLVIDGATSTLTV 291 (896)
Q Consensus 236 vga~---~~pyle~lLp~L~e~Lsd-dDW~lRKaA~EaLgsLA~avG--e~L~Py~~~~I~~ 291 (896)
-.+. ..+....+-+.|...+.+ .+..+|..|+-+|...+.-.+ +.|.-.....+.+
T Consensus 560 n~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~re~~~d~~~Lsw~~lv~a 621 (728)
T KOG4535|consen 560 NPALPLQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVPGKREQYGDQYALSWNALVTA 621 (728)
T ss_pred CccccccCCCchHHHHHHHHHHHHHhccceEeehhhhhhcCCCCcccchhHHhHHHHHHHHH
Confidence 4422 255666777777777665 678899999999888777666 4443333444333
No 166
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=92.88 E-value=0.26 Score=56.44 Aligned_cols=130 Identities=15% Similarity=0.139 Sum_probs=84.3
Q ss_pred CChhHHHHHHHH-HHHHHhcCCCCCHHHHHHHHhhh------cCCCChhhHHHHHHHHHHHHHHhcc---------cchh
Q 002658 53 ADRDTHQIAIED-LEKTIQTLSQESLPMLLNCLYES------SNDPKPAVKKESVRLLALVCELHSE---------LTST 116 (896)
Q Consensus 53 sDRDT~k~Aa~e-LD~La~~L~pd~Lp~fLs~L~es------~ss~k~~vRKeAIllLG~IAeg~~d---------~I~P 116 (896)
+|-+|++.|+.. |..+.........+.++.++... ..+.+|..+..|+.+++.++..... .+.+
T Consensus 222 sd~~TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~ 301 (370)
T PF08506_consen 222 SDSDTRRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVD 301 (370)
T ss_dssp S---SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-
T ss_pred cccCCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCccccccccc
Confidence 466677766554 44555555432344444455433 3467899999999999999875421 1223
Q ss_pred hHHHHHHHHHHhhc---CCChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhcCCHhHHHHHHHHH
Q 002658 117 HVTKIISHIVKRLK---DSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCM 189 (896)
Q Consensus 117 ~LpkIL~~IlrrLk---DpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasAL 189 (896)
...-...+|+.-|+ ...|.+|..|++.+..+..++. .+.+..+++.|+..|..++..|..-||.|+
T Consensus 302 v~~Ff~~~v~peL~~~~~~~piLka~aik~~~~Fr~~l~-------~~~l~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 302 VVDFFSQHVLPELQPDVNSHPILKADAIKFLYTFRNQLP-------KEQLLQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHHHHTCHHHH-SS-S-HHHHHHHHHHHHHHGGGS--------HHHHHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHHHHhHHHhcccCCCCcchHHHHHHHHHHHHhhCC-------HHHHHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 33333445555566 4568999999999999999883 256888999999999999999998888885
No 167
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=92.83 E-value=8 Score=47.95 Aligned_cols=195 Identities=14% Similarity=0.103 Sum_probs=137.1
Q ss_pred CCCChhhHHHHHHHHHHHHHHhcc--------cch--hhHHHHHHHHHHh--hcCCChHHHHHHHHHHHHHHHHHhcccc
Q 002658 89 NDPKPAVKKESVRLLALVCELHSE--------LTS--THVTKIISHIVKR--LKDSDSGMKEACRDSIGSLSKLYLNGKE 156 (896)
Q Consensus 89 ss~k~~vRKeAIllLG~IAeg~~d--------~I~--P~LpkIL~~Ilrr--LkDpDs~VR~Ac~~aLG~LA~~li~~~~ 156 (896)
+...|..=+.|+.++=.++|+-.. .+. ..|..+++.+... +..+.+.|.---.+.|.++......+
T Consensus 450 ~e~swqevE~Aiylly~lgE~l~~~~~~~nsgd~s~~~vl~~~~~ll~tsqv~~h~h~lVqLlfmE~ivRY~kff~~e-- 527 (980)
T KOG2021|consen 450 KEESWQEVELAIYLLYNLGECLKNNYFGLNSGDISTSQVLFLNELLLMTSQVLAHDHELVQLLFMELIVRYNKFFSTE-- 527 (980)
T ss_pred CcchHHHHHHHHHHHHHHhhccccccccccCccccHHHHHHHHHHHHHHcccccCCchHHHHHHHHHHHHHHHHHhcc--
Confidence 556788889999999999987432 122 4566777777665 67788899999999999999888332
Q ss_pred cCCchhHhhhHHHHHHHH------hcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCC----chh-----
Q 002658 157 ENNGTVVGLFVKPLFEAM------MEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQ----NFM----- 221 (896)
Q Consensus 157 e~~~~~~~~lL~pL~eaL------~Eqnk~VQ~gAasALAkIIE~a~d~~~~yL~~LlPRL~kLLks~----s~k----- 221 (896)
+...|.++.+. ..+|.+|--.|.+-+.+++...+....+|+++++.++-.+|+.+ ++.
T Consensus 528 -------sq~ip~vL~aFld~rglhn~ne~Vr~RawYLF~RfVKlLkkqlvpfie~iln~iqdlL~~~vtt~N~~s~~lt 600 (980)
T KOG2021|consen 528 -------SQKIPLVLNAFLDSRGLHNKNENVRLRAWYLFTRFVKLLKKQLVPFIEEILNKIQDLLHIKVTTINAQSDNLT 600 (980)
T ss_pred -------hhhhHHHHHHHccchhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCCCcCccccccc
Confidence 22444444444 35688999999999999999988888899999999999999432 100
Q ss_pred ----------------------h--H-------------------------------H------HHHHHHHHHHh---cc
Q 002658 222 ----------------------A--K-------------------------------A------SLLPVVGSLSQ---VG 237 (896)
Q Consensus 222 ----------------------a--K-------------------------------~------alL~aIgSLA~---vg 237 (896)
+ + . .++-+||+++. .+
T Consensus 601 ~fddqlyIfEtiGviI~l~n~paE~qaay~~~litpl~~~~~igl~~a~lasde~~pv~Ia~c~~~lmaig~lakgf~~r 680 (980)
T KOG2021|consen 601 IFDDQLYIFETIGVIITLNNSPAELQAAYANTLITPLILDQIIGLLFAQLASDEASPVVIAECHHILMAIGTLAKGFHIR 680 (980)
T ss_pred cccccceeeecceEEEeCCCCCHHHHHHHHhcccChHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHhhccccc
Confidence 0 0 1 23334555542 01
Q ss_pred ----------ccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcchHHHhhHHHHHHHHHh
Q 002658 238 ----------AIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSSNLVIDGATSTLTVLEA 294 (896)
Q Consensus 238 ----------a~~~pyle~lLp~L~e~LsddDW~lRKaA~EaLgsLA~avGe~L~Py~~~~I~~LE~ 294 (896)
..|...++.+++.|..+..- -.+|.++--+++.|-..+|+.+.||++..++.|.+
T Consensus 681 lvt~~qvg~~~vf~~~ldvil~~ls~f~k~--E~iRsavrft~hRmI~~lg~~vlPfipklie~lL~ 745 (980)
T KOG2021|consen 681 LVTENQVGNMVVFSNILDVILVTLSFFNKF--ENIRSAVRFTFHRMIPILGNKVLPFIPKLIELLLS 745 (980)
T ss_pred CcchhcccHHHHHHHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHHhcchhhhcchHHHHHHHHh
Confidence 11234444455555544443 45899999999999999999999999999987763
No 168
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=92.75 E-value=13 Score=50.57 Aligned_cols=247 Identities=13% Similarity=0.108 Sum_probs=144.0
Q ss_pred HHHHHHh---cCCCCCHHHHHHHHhhhc----CCCChhhHHHHHHHHHHHHHHhcccchhhHHH----HHHHHHHhhcCC
Q 002658 64 DLEKTIQ---TLSQESLPMLLNCLYESS----NDPKPAVKKESVRLLALVCELHSELTSTHVTK----IISHIVKRLKDS 132 (896)
Q Consensus 64 eLD~La~---~L~pd~Lp~fLs~L~es~----ss~k~~vRKeAIllLG~IAeg~~d~I~P~Lpk----IL~~IlrrLkDp 132 (896)
.+|++-. .|+.+.|..|+.+|++-. ... ..-|--++.-|..++....+.+.-.+.+ |-.++++.-.++
T Consensus 1071 ~idkIF~~S~~L~~eai~~fv~AL~~vS~eEl~~~-~~pr~FsLqKLveIa~~Nm~Rirl~W~~iW~~l~~hf~~vg~~~ 1149 (1780)
T PLN03076 1071 EMNRIFTRSQKLNSEAIIDFVKALCKVSMEELRSP-SDPRVFSLTKIVEIAHYNMNRIRLVWSSIWHVLSDFFVTIGCSE 1149 (1780)
T ss_pred HHHHHHHhcccCCHHHHHHHHHHHHHhhHHHHccC-CCCchhHHHHHHHHHHhcccchheehHhHHHHHHHHHHHhcCCc
Confidence 5566654 467777888888887542 111 2347778888888888777776544444 555566655566
Q ss_pred ChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHh-cCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 002658 133 DSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMM-EQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARI 211 (896)
Q Consensus 133 Ds~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~-Eqnk~VQ~gAasALAkIIE~a~d~~~~yL~~LlPRL 211 (896)
+..|+--|.+.|.+|+-.++....-.+...-..||+|+...|. ..+..+++-...|+..+++....-+..--..++--|
T Consensus 1150 n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktIF~VL 1229 (1780)
T PLN03076 1150 NLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMVF 1229 (1780)
T ss_pred chhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCcHHHHHHH
Confidence 7789999999999999988653110111223579999998884 567899999999999999875333322222222222
Q ss_pred HHHhcCCchhhHHHHHHHHHHHHhcc-ccC----cccHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHHHHhc--------
Q 002658 212 CKLLSNQNFMAKASLLPVVGSLSQVG-AIA----PQSLEPLLQSIHECLGST-DWATRKAAADALSALALHS-------- 277 (896)
Q Consensus 212 ~kLLks~s~kaK~alL~aIgSLA~vg-a~~----~pyle~lLp~L~e~Lsdd-DW~lRKaA~EaLgsLA~av-------- 277 (896)
.......+..+-..+.+.+.-|..-. ... ...|..++.+|.+|.... +..+=..|++.|-.++..+
T Consensus 1230 s~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~~~~~ 1309 (1780)
T PLN03076 1230 TTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGDLGSS 1309 (1780)
T ss_pred HHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhcccccc
Confidence 32333333333334444444443211 111 246667777777776542 2222234444444332222
Q ss_pred ---------------------------c-hHHHhhHHHHHHHHHhhhcCCChhhHHHHHHHH
Q 002658 278 ---------------------------S-NLVIDGATSTLTVLEACRFDKIKPVRDSMNEAL 311 (896)
Q Consensus 278 ---------------------------G-e~L~Py~~~~I~~LE~~RfDKvKpVRDaA~eAL 311 (896)
+ +...-+--+++..|..+-.|...+||..|++.|
T Consensus 1310 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtL 1371 (1780)
T PLN03076 1310 SRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVL 1371 (1780)
T ss_pred ccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 0 111112234455555667788888999988776
No 169
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=92.69 E-value=1.1 Score=42.56 Aligned_cols=86 Identities=12% Similarity=0.161 Sum_probs=68.2
Q ss_pred HHHHHHHHHhcC----CchhhHHHHHHHHHHHHhcc-ccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcc-h
Q 002658 206 KLCARICKLLSN----QNFMAKASLLPVVGSLSQVG-AIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSS-N 279 (896)
Q Consensus 206 ~LlPRL~kLLks----~s~kaK~alL~aIgSLA~vg-a~~~pyle~lLp~L~e~LsddDW~lRKaA~EaLgsLA~avG-e 279 (896)
-++.++-..+++ ..+.-|..+|.+|+.++..+ .....+...+|.+|...+..+ .+|..|++|...+...++ +
T Consensus 11 gil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~--~l~~~al~~W~~fi~~L~~~ 88 (107)
T PF08064_consen 11 GILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIP--ELREEALSCWNCFIKTLDEE 88 (107)
T ss_pred HHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCh--hhHHHHHHHHHHHHHHCCHH
Confidence 456666666665 45566778899999998755 556667777888888887765 899999999999999999 8
Q ss_pred HHHhhHHHHHHHHH
Q 002658 280 LVIDGATSTLTVLE 293 (896)
Q Consensus 280 ~L~Py~~~~I~~LE 293 (896)
.+.|+++.++-++.
T Consensus 89 ~l~~ll~~~~~~l~ 102 (107)
T PF08064_consen 89 DLGPLLDQIFAILL 102 (107)
T ss_pred HHHHHHHHHHHHHH
Confidence 89999999887664
No 170
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=92.66 E-value=26 Score=41.34 Aligned_cols=168 Identities=11% Similarity=0.127 Sum_probs=102.3
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhcCC-------------CCCHHHHHHHHhhhcCCCChhhHHHHHHHHHH
Q 002658 39 VEMKQKILTSLSKLADRDTHQIAIEDLEKTIQTLS-------------QESLPMLLNCLYESSNDPKPAVKKESVRLLAL 105 (896)
Q Consensus 39 ~~Lk~rll~~L~KLsDRDT~k~Aa~eLD~La~~L~-------------pd~Lp~fLs~L~es~ss~k~~vRKeAIllLG~ 105 (896)
....+-++.+|.+.+..||.+..+.-++.+.+..+ ++.+.+|+..| +.+++.+-..+..+|..
T Consensus 52 ~~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL----~~~d~~i~~~a~~iLt~ 127 (429)
T cd00256 52 GQYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLL----NRQDQFIVHMSFSILAK 127 (429)
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHH----cCCchhHHHHHHHHHHH
Confidence 34556667788888999999999999998887532 23355555533 34567777788888877
Q ss_pred HHHHhccc-chhhHHHHHHHHHHhhcCCC-hHHHHHHHHHHHHHHHHH-hcccccCCchhHhhhHHHHHHHHhc--CCHh
Q 002658 106 VCELHSEL-TSTHVTKIISHIVKRLKDSD-SGMKEACRDSIGSLSKLY-LNGKEENNGTVVGLFVKPLFEAMME--QNKG 180 (896)
Q Consensus 106 IAeg~~d~-I~P~LpkIL~~IlrrLkDpD-s~VR~Ac~~aLG~LA~~l-i~~~~e~~~~~~~~lL~pL~eaL~E--qnk~ 180 (896)
++...... -...+++++..+...|+.++ .....+|..++..|...= .+..+- -...+++|+..|.. .+..
T Consensus 128 l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~-----~~~~v~~L~~~L~~~~~~~Q 202 (429)
T cd00256 128 LACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFV-----LADGVPTLVKLLSNATLGFQ 202 (429)
T ss_pred HHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHH-----HccCHHHHHHHHhhccccHH
Confidence 76533332 23467778888888887654 556667776666553211 000010 01256777777742 2557
Q ss_pred HHHHHHHHHHHHHHhcCCCCchhH--HHHHHHHHHHhcC
Q 002658 181 VQSGAAMCMAKMVECASDPPVVAF--QKLCARICKLLSN 217 (896)
Q Consensus 181 VQ~gAasALAkIIE~a~d~~~~yL--~~LlPRL~kLLks 217 (896)
.|.-++.|+=-+-=+.. ..+.+ ..++|.|+.+++.
T Consensus 203 l~Y~~ll~lWlLSF~~~--~~~~~~~~~~i~~l~~i~k~ 239 (429)
T cd00256 203 LQYQSIFCIWLLTFNPH--AAEVLKRLSLIQDLSDILKE 239 (429)
T ss_pred HHHHHHHHHHHHhccHH--HHHhhccccHHHHHHHHHHh
Confidence 77788888755432211 11111 2477777777764
No 171
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=92.63 E-value=2.9 Score=47.51 Aligned_cols=155 Identities=10% Similarity=0.079 Sum_probs=98.0
Q ss_pred CHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhccc
Q 002658 76 SLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGK 155 (896)
Q Consensus 76 ~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~ 155 (896)
.+..|+..|.+..-+.+...|++|+..|..- ..+.+-||+++.+|...+...-.. --.....+.+++.-++...
T Consensus 175 Elq~yf~~It~a~~~~~~~~r~~aL~sL~tD-----~gl~~LlPyf~~fI~~~v~~n~~~-nl~~L~~lm~~v~ALl~N~ 248 (343)
T cd08050 175 ELQLYFEEITEALVGSNEEKRREALQSLRTD-----PGLQQLLPYFVRFIAEGVTVNLDQ-NLALLIYLMRMVRALLDNP 248 (343)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHhccC-----CCchhhhhHHHHHHHHHHHhhhcc-cHHHHHHHHHHHHHHhcCC
Confidence 4667777777776666777788776665321 224455555555555554322110 1233445666777776643
Q ss_pred ccCCchhHhhhHHHHHHHHhc----------CCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchhhHHH
Q 002658 156 EENNGTVVGLFVKPLFEAMME----------QNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKAS 225 (896)
Q Consensus 156 ~e~~~~~~~~lL~pL~eaL~E----------qnk~VQ~gAasALAkIIE~a~d~~~~yL~~LlPRL~kLLks~s~kaK~a 225 (896)
.-..+.++..++++++.+|.. ....+..-||..|+.+|......-....+.++-.|.+.|-++.... ..
T Consensus 249 ~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~-~~ 327 (343)
T cd08050 249 NLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPL-TT 327 (343)
T ss_pred CCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCc-ch
Confidence 334567889999999999932 2246778899999999997655544556677777777877654332 23
Q ss_pred HHHHHHHHHhcc
Q 002658 226 LLPVVGSLSQVG 237 (896)
Q Consensus 226 lL~aIgSLA~vg 237 (896)
.|++|..+...|
T Consensus 328 ~YGAi~GL~~lG 339 (343)
T cd08050 328 HYGAIVGLSALG 339 (343)
T ss_pred hhHHHHHHHHhC
Confidence 677776665555
No 172
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=92.42 E-value=3.3 Score=52.68 Aligned_cols=141 Identities=13% Similarity=0.120 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhc-CCHhHHHHHHHHHHHHHHhcCC-CCchhHHHHHHHHH
Q 002658 135 GMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMME-QNKGVQSGAAMCMAKMVECASD-PPVVAFQKLCARIC 212 (896)
Q Consensus 135 ~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~E-qnk~VQ~gAasALAkIIE~a~d-~~~~yL~~LlPRL~ 212 (896)
.-|..|+.+|+.|+..+.. +. ..-.-..++-..++.|.+ +.|-...=.|.||.++-|+-.. .....=..--.+|+
T Consensus 572 EqrtmaAFVLAviv~nf~l-GQ--~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~ 648 (1387)
T KOG1517|consen 572 EQRTMAAFVLAVIVRNFKL-GQ--KACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLI 648 (1387)
T ss_pred HHHHHHHHHHHHHHcccch-hH--HHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHH
Confidence 4556666666666655421 10 001122344455555644 3455555688888888876322 11112223457889
Q ss_pred HHhcCCchhhHHHHHHHHHHHHhcc-ccCc----------------ccHHHHHH----HHHHhhCCCCHHHHHHHHHHHH
Q 002658 213 KLLSNQNFMAKASLLPVVGSLSQVG-AIAP----------------QSLEPLLQ----SIHECLGSTDWATRKAAADALS 271 (896)
Q Consensus 213 kLLks~s~kaK~alL~aIgSLA~vg-a~~~----------------pyle~lLp----~L~e~LsddDW~lRKaA~EaLg 271 (896)
.+|.++...+|++++-|+|++...+ .-|. .-.+.+++ .|...+++...-+|+.++.+|.
T Consensus 649 ~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls 728 (1387)
T KOG1517|consen 649 LLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVALS 728 (1387)
T ss_pred HHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHHHH
Confidence 9999999999999999999998643 1111 11333333 5566677777888888888777
Q ss_pred HHHHhcc
Q 002658 272 ALALHSS 278 (896)
Q Consensus 272 sLA~avG 278 (896)
.++...-
T Consensus 729 ~~~~g~~ 735 (1387)
T KOG1517|consen 729 HFVVGYV 735 (1387)
T ss_pred HHHHhhH
Confidence 6665443
No 173
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=92.32 E-value=21 Score=39.41 Aligned_cols=185 Identities=19% Similarity=0.144 Sum_probs=120.5
Q ss_pred HHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCc----hhHhhhHHHHHHHHhcCC-----HhHHHHHHHH
Q 002658 118 VTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNG----TVVGLFVKPLFEAMMEQN-----KGVQSGAAMC 188 (896)
Q Consensus 118 LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~----~~~~~lL~pL~eaL~Eqn-----k~VQ~gAasA 188 (896)
.+-|-+.|+++|.-+. --+.+...+.+|+..--.+-.+... -.+-..+|-++..+.+.+ +.+ ...|.+
T Consensus 62 f~Glq~Ll~KGL~Ss~--t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~-~~~A~~ 138 (262)
T PF14225_consen 62 FEGLQPLLLKGLRSSS--TYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQEC-IEIAEA 138 (262)
T ss_pred chhHHHHHhCccCCCC--cHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHH-HHHHHH
Confidence 4556777888887665 3455666777777664332111111 123345677777776555 233 357788
Q ss_pred HHHHHHhcCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhccccCcccHHHHHHHHHHhhCCCCHHHHHHHHH
Q 002658 189 MAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAAD 268 (896)
Q Consensus 189 LAkIIE~a~d~~~~yL~~LlPRL~kLLks~s~kaK~alL~aIgSLA~vga~~~pyle~lLp~L~e~LsddDW~lRKaA~E 268 (896)
|+.+++..+.. =+-+++..+....|+-+..-+.++.+.+. ...|+.|--.++-.|.+.|.+.-.-+|..+++
T Consensus 139 La~~a~~~~~~-------~La~il~~ya~~~fr~~~dfl~~v~~~l~-~~f~P~~~~~~l~~Ll~lL~n~~~w~~~~~L~ 210 (262)
T PF14225_consen 139 LAQVAEAQGLP-------NLARILSSYAKGRFRDKDDFLSQVVSYLR-EAFFPDHEFQILTFLLGLLENGPPWLRRKTLQ 210 (262)
T ss_pred HHHHHHhCCCc-------cHHHHHHHHHhcCCCCHHHHHHHHHHHHH-HHhCchhHHHHHHHHHHHHhCCcHHHHHHHHH
Confidence 99999865433 12444555555677777766666555443 13457777888888999999887788999999
Q ss_pred HHHHHHHhcchHHHhhHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHhccC
Q 002658 269 ALSALALHSSNLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQLWKKIAGK 320 (896)
Q Consensus 269 aLgsLA~avGe~L~Py~~~~I~~LE~~RfDKvKpVRDaA~eALe~WK~la~~ 320 (896)
+|..+...+.-. .|+-.++|..+...... +...+||+..+.+-.+
T Consensus 211 iL~~ll~~~d~~-~~~~~dlispllrlL~t------~~~~eAL~VLd~~v~~ 255 (262)
T PF14225_consen 211 ILKVLLPHVDMR-SPHGADLISPLLRLLQT------DLWMEALEVLDEIVTR 255 (262)
T ss_pred HHHHHhccccCC-CCcchHHHHHHHHHhCC------ccHHHHHHHHHHHHhh
Confidence 999999888711 45666677666544444 4667888888887754
No 174
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=92.30 E-value=6.3 Score=46.98 Aligned_cols=201 Identities=18% Similarity=0.199 Sum_probs=114.7
Q ss_pred hhHhHHHHHHHHHHHHHcC--CCh---------------hHHHHHHHHHHHHHhcCCCCCHHHHHHHHhh--h--cCCCC
Q 002658 34 SHLAMVEMKQKILTSLSKL--ADR---------------DTHQIAIEDLEKTIQTLSQESLPMLLNCLYE--S--SNDPK 92 (896)
Q Consensus 34 ~~~~~~~Lk~rll~~L~KL--sDR---------------DT~k~Aa~eLD~La~~L~pd~Lp~fLs~L~e--s--~ss~k 92 (896)
..+.+.++|..++..|..- .|. +....|-..|.++...+....+...|-.|+- . ..+..
T Consensus 213 ~~~~L~~~K~~il~fL~sg~f~d~~~~~~~liAsad~~~~V~~~ae~~LKr~~~~~ed~~~V~~L~~Ly~G~~~~~~~~~ 292 (501)
T PF13001_consen 213 SRENLTERKLAILKFLASGFFPDEERFPPLLIASADSNSSVSDRAEDLLKRLSVSLEDPDLVDRLFDLYLGKGIPPENGR 292 (501)
T ss_pred cHHHHHHHHHHHHHHHHhcCCCcHhHHhheeeEEeCCcchHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCchhcCC
Confidence 4569999999999988654 232 2556677777777766544344333333332 1 11111
Q ss_pred hhhHHH-HHHHHHHHHHHhcccchhhHHHHHHHHHHhhcCC--ChHHHHHHHHHH---HHHHHHHhcccccCCchhHhhh
Q 002658 93 PAVKKE-SVRLLALVCELHSELTSTHVTKIISHIVKRLKDS--DSGMKEACRDSI---GSLSKLYLNGKEENNGTVVGLF 166 (896)
Q Consensus 93 ~~vRKe-AIllLG~IAeg~~d~I~P~LpkIL~~IlrrLkDp--Ds~VR~Ac~~aL---G~LA~~li~~~~e~~~~~~~~l 166 (896)
++++-. -.++|..+++...-. .+.+.++..+..+|..+ .+.+|..+..-+ .....++
T Consensus 293 ~pa~~~lq~kIL~~L~kS~~Aa--~~~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~--------------- 355 (501)
T PF13001_consen 293 PPASPRLQEKILSLLSKSVIAA--TSFPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHI--------------- 355 (501)
T ss_pred CCCCHHHHHHHHHHHHHhHHHH--hCCccHHHHHhccccCCccccccchhcchhhhcchHHhhhc---------------
Confidence 122111 245555555532211 23355566667777766 556666665554 2222222
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHh--------cCCchhhHHHHHHHHHHHHhcc-
Q 002658 167 VKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLL--------SNQNFMAKASLLPVVGSLSQVG- 237 (896)
Q Consensus 167 L~pL~eaL~Eqnk~VQ~gAasALAkIIE~a~d~~~~yL~~LlPRL~kLL--------ks~s~kaK~alL~aIgSLA~vg- 237 (896)
.......|..+++. .+.+++ .+.....|..+|.+||.++..-
T Consensus 356 ---------------~~~~l~~l~~~i~~--------------~g~p~~~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p 406 (501)
T PF13001_consen 356 ---------------SPQILKLLRPVILS--------------QGWPLIQDSSSQSNSSEDIELRSLAYETLGLLAKRAP 406 (501)
T ss_pred ---------------CHHHHHHHHHHHHh--------------cCccccccccccCCCcccHHHHHHHHHHHHHHHccCc
Confidence 01111122233322 222222 1235668889999999998633
Q ss_pred ccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcchHH
Q 002658 238 AIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSSNLV 281 (896)
Q Consensus 238 a~~~pyle~lLp~L~e~LsddDW~lRKaA~EaLgsLA~avGe~L 281 (896)
..+..- -.++.-|++.|.+++.++|-+.-|||+.|+.+..+.-
T Consensus 407 ~l~~~d-~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~~~ 449 (501)
T PF13001_consen 407 SLFSKD-LSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKDLP 449 (501)
T ss_pred cccccc-HHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhccc
Confidence 333111 3567788888888999999999999999999998543
No 175
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.28 E-value=11 Score=50.95 Aligned_cols=242 Identities=20% Similarity=0.226 Sum_probs=148.4
Q ss_pred HHHHcCCC-hh-----HHHHHHHHHHHHHhcCCCCC-HHHHHHHHhhhcCCC-ChhhHHHHHHHHHHHHHHhcccchhhH
Q 002658 47 TSLSKLAD-RD-----THQIAIEDLEKTIQTLSQES-LPMLLNCLYESSNDP-KPAVKKESVRLLALVCELHSELTSTHV 118 (896)
Q Consensus 47 ~~L~KLsD-RD-----T~k~Aa~eLD~La~~L~pd~-Lp~fLs~L~es~ss~-k~~vRKeAIllLG~IAeg~~d~I~P~L 118 (896)
.++.|+.+ || .+-.|+..|.+....+.+.+ +..-+..|+.-.++. .|.++.-++.++..+++.++....-|.
T Consensus 919 ~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~v 998 (2067)
T KOG1822|consen 919 NSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQHLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLV 998 (2067)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCchhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhH
Confidence 35566632 22 44577788888888776655 555444554444443 458999999999999999988777777
Q ss_pred HHHHHHHHHh-hcCCCh--HHHHHHHHHHH------HHHHHHhcccccCCc-----hhHhhhHHHHHHHH-hcCCHhHHH
Q 002658 119 TKIISHIVKR-LKDSDS--GMKEACRDSIG------SLSKLYLNGKEENNG-----TVVGLFVKPLFEAM-MEQNKGVQS 183 (896)
Q Consensus 119 pkIL~~Ilrr-LkDpDs--~VR~Ac~~aLG------~LA~~li~~~~e~~~-----~~~~~lL~pL~eaL-~Eqnk~VQ~ 183 (896)
..-++.+... |.+|.. .|++.-...+. .|..-+..+ .++++ ..+..++-.-...+ ...++-+|+
T Consensus 999 e~tlsl~~~lLls~p~~~~ev~q~~~R~~~~~~~~~alittlgpe-L~~N~~~d~t~~~rts~la~~allls~~d~lnqa 1077 (2067)
T KOG1822|consen 999 EPTLSLCLKLLLSVPTSHVEVHQCYNRCFNGDDDEDALITTLGPE-LGPNGDKDSTSTLRTSCLAACALLLSHSDPLNQA 1077 (2067)
T ss_pred HHHHHHHHHHcCCCCcchhhhhhhhccccccchhHHHHHHhcccc-cCCCCcccchhHHHHHHHHHHHHhcCCCccchHH
Confidence 7777766666 555654 45555555544 777666432 11111 22222221111122 345899999
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcc-ccCcc--------------------
Q 002658 184 GAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVG-AIAPQ-------------------- 242 (896)
Q Consensus 184 gAasALAkIIE~a~d~~~~yL~~LlPRL~kLLks~s~kaK~alL~aIgSLA~vg-a~~~p-------------------- 242 (896)
+|..||..+==.++. .--++.|++.|+.+|.+.+.-.|.+.+.|+.-++.-. .....
T Consensus 1078 ~ai~clqqlhlFapr--~~n~~~lV~~L~~~l~s~~~i~r~~~~~clrql~~Re~sev~e~a~~L~~~~~~e~~~d~~~~ 1155 (2067)
T KOG1822|consen 1078 AAIKCLQQLHLFAPR--HVNLDSLVLQLCSLLSSSYLILRRASFSCLRQLVQREASEVCEYAQLLAKTLAVETSPDANIR 1155 (2067)
T ss_pred HHHHHHHHHHhhcch--hccHHHHHHHHHHHhcchhhhhhhhHHhhhhHHhHHHHHHHHHHHHHhhhhhhhhhChhhhcC
Confidence 999999988655433 1247789999999999998887777777777665322 11111
Q ss_pred ---cHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcc-hHHHhhHHHHHHHHH
Q 002658 243 ---SLEPLLQSIHECLGSTDWATRKAAADALSALALHSS-NLVIDGATSTLTVLE 293 (896)
Q Consensus 243 ---yle~lLp~L~e~LsddDW~lRKaA~EaLgsLA~avG-e~L~Py~~~~I~~LE 293 (896)
.++..+-.+++ ...|..+++--.++|..+....- +.|..++..|...+.
T Consensus 1156 pe~gLeg~l~~mld--~e~d~~l~~~I~~tl~~~~~~~~~~~ls~Wl~l~k~~l~ 1208 (2067)
T KOG1822|consen 1156 PEAGLEGALFIMLD--TETDNKLLKNILETLSRMLNSLADELLSSWLMLLKDLLQ 1208 (2067)
T ss_pred ccccchHHHHHHcC--CchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 11222222222 33566677777777777555554 666666666666655
No 176
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=92.26 E-value=0.23 Score=60.17 Aligned_cols=217 Identities=13% Similarity=0.169 Sum_probs=134.6
Q ss_pred HHHcCCChhHHHHHHHHHHHHHhcCCCCCH-HHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHH
Q 002658 48 SLSKLADRDTHQIAIEDLEKTIQTLSQESL-PMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIV 126 (896)
Q Consensus 48 ~L~KLsDRDT~k~Aa~eLD~La~~L~pd~L-p~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~Il 126 (896)
.|+.+.=.+..+-.+.-|=.+...++.+.| ..++++|......++-.+|---+.-+...++...+.+. ..+|+|++.
T Consensus 298 Ll~~~~~g~a~~~~ltpl~k~~k~ld~~eyq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~~~~--~d~I~phv~ 375 (690)
T KOG1243|consen 298 LLAALEFGDAASDFLTPLFKLGKDLDEEEYQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLTKQIL--NDQIFPHVA 375 (690)
T ss_pred HHHHhhccccchhhhhHHHHhhhhccccccccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhcCHHhh--cchhHHHHH
Confidence 345552222566666777777777765442 23466666666677788888877777777776665543 367788889
Q ss_pred HhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCchhHHH
Q 002658 127 KRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQK 206 (896)
Q Consensus 127 rrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~a~d~~~~yL~~ 206 (896)
.++.|.++.+|..+..++..|+..+-... .-.++++-|...-.++....-.---.||.++-....... .=.-
T Consensus 376 ~G~~DTn~~Lre~Tlksm~~La~kL~~~~------Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~--R~~v 447 (690)
T KOG1243|consen 376 LGFLDTNATLREQTLKSMAVLAPKLSKRN------LNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASV--RKRV 447 (690)
T ss_pred hhcccCCHHHHHHHHHHHHHHHhhhchhh------hcHHHHHHHHhhCccccCcccccceeeecccccccchhh--hccc
Confidence 99999999999999999999988885531 134566666555555544444444455555555420000 0012
Q ss_pred HHHHHHHHhcCCchhhHHHHHHHHHHH---HhccccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcc
Q 002658 207 LCARICKLLSNQNFMAKASLLPVVGSL---SQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSS 278 (896)
Q Consensus 207 LlPRL~kLLks~s~kaK~alL~aIgSL---A~vga~~~pyle~lLp~L~e~LsddDW~lRKaA~EaLgsLA~avG 278 (896)
|.-.+...+++|-..+|.+.+-++.+. .... .....++|.|.-..-+++..+|..|-.++-.-.....
T Consensus 448 L~~aftralkdpf~paR~a~v~~l~at~~~~~~~----~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~kl~ 518 (690)
T KOG1243|consen 448 LASAFTRALKDPFVPARKAGVLALAATQEYFDQS----EVANKILPSLVPLTVDPEKTVRDTAEKAIRQFLEKLE 518 (690)
T ss_pred cchhhhhhhcCCCCCchhhhhHHHhhcccccchh----hhhhhccccccccccCcccchhhHHHHHHHHHHhhhh
Confidence 445566677777666665433333322 2211 1233677777788888888888888887777666554
No 177
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=92.26 E-value=2.3 Score=53.01 Aligned_cols=170 Identities=15% Similarity=0.146 Sum_probs=108.4
Q ss_pred CChhHHHHHHHHHHHHHhcCCCC--------CHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccchh--hHHHHH
Q 002658 53 ADRDTHQIAIEDLEKTIQTLSQE--------SLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTST--HVTKII 122 (896)
Q Consensus 53 sDRDT~k~Aa~eLD~La~~L~pd--------~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I~P--~LpkIL 122 (896)
..-|..-.|+.+|--+..-||+. .+|.|+.-|+. + +.--+=+.++.+|..|.+.|+..+.. .|.-.+
T Consensus 224 ~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~-I--eyiDvAEQ~LqALE~iSR~H~~AiL~AG~l~a~L 300 (1051)
T KOG0168|consen 224 HNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLT-I--EYIDVAEQSLQALEKISRRHPKAILQAGALSAVL 300 (1051)
T ss_pred ccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhh-h--hhhHHHHHHHHHHHHHHhhccHHHHhcccHHHHH
Confidence 67888889999998888887642 35666555531 1 22346688999999999999987532 333333
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCC--
Q 002658 123 SHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPP-- 200 (896)
Q Consensus 123 ~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~a~d~~-- 200 (896)
.++ .==...++..|.-+++..+..+..+. ..++.+.||.|...|.-+++.+-+.+|.||.+++|.....+
T Consensus 301 syl----DFFSi~aQR~AlaiaaN~Cksi~sd~----f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~k 372 (1051)
T KOG0168|consen 301 SYL----DFFSIHAQRVALAIAANCCKSIRSDE----FHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDK 372 (1051)
T ss_pred HHH----HHHHHHHHHHHHHHHHHHHhcCCCcc----chHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHH
Confidence 322 11223455566666666666663222 36678888888888888999999999999999999862221
Q ss_pred -ch-hHHHHHHHHHHHhcCC----chhhHHHHHHHHHHH
Q 002658 201 -VV-AFQKLCARICKLLSNQ----NFMAKASLLPVVGSL 233 (896)
Q Consensus 201 -~~-yL~~LlPRL~kLLks~----s~kaK~alL~aIgSL 233 (896)
.+ +-+.|+.+...+|.-. +..++..++..+..+
T Consensus 373 Ldql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~m 411 (1051)
T KOG0168|consen 373 LDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLM 411 (1051)
T ss_pred HHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHH
Confidence 11 2234666777776543 223344444444444
No 178
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=92.18 E-value=0.33 Score=46.57 Aligned_cols=120 Identities=15% Similarity=0.221 Sum_probs=80.7
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhccc----------------chhhHHHHHHH
Q 002658 61 AIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSEL----------------TSTHVTKIISH 124 (896)
Q Consensus 61 Aa~eLD~La~~L~pd~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~----------------I~P~LpkIL~~ 124 (896)
.+..|-.++..--|+..+.|+..+.+..++ .+......+.+|..+.+-..+. +..+++.|+.+
T Consensus 8 l~~~l~~i~~~~~P~~Wp~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~~~~~i~~~ 86 (148)
T PF08389_consen 8 LAQVLAEIAKRDWPQQWPDFLEDLLQLLQS-SPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRSNSPDILEI 86 (148)
T ss_dssp HHHHHHHHHHHHTTTTSTTHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHChhhCchHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555443355667777777666544 4667777888888888776641 33467888888
Q ss_pred HHHhhcCCC----hHHHHHHHHHHHHHHHHHhcccccCCchhH-hhhHHHHHHHHhcCCHhHHHHHHHHH
Q 002658 125 IVKRLKDSD----SGMKEACRDSIGSLSKLYLNGKEENNGTVV-GLFVKPLFEAMMEQNKGVQSGAAMCM 189 (896)
Q Consensus 125 IlrrLkDpD----s~VR~Ac~~aLG~LA~~li~~~~e~~~~~~-~~lL~pL~eaL~Eqnk~VQ~gAasAL 189 (896)
+.+.|.... ..+..++..+++.+..|+.-. ... ..++..++..| +++..+.+|+.||
T Consensus 87 l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~------~i~~~~~l~~~~~~l--~~~~~~~~A~~cl 148 (148)
T PF08389_consen 87 LSQILSQSSSEANEELVKAALKCLKSWISWIPIE------LIINSNLLNLIFQLL--QSPELREAAAECL 148 (148)
T ss_dssp HHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HH------HHHSSSHHHHHHHHT--TSCCCHHHHHHHH
T ss_pred HHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHH------HhccHHHHHHHHHHc--CCHHHHHHHHHhC
Confidence 888887766 677888888888887766211 111 23788888888 4566699999887
No 179
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=92.17 E-value=1.6 Score=53.51 Aligned_cols=154 Identities=15% Similarity=0.134 Sum_probs=98.9
Q ss_pred HHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHh-hcCCChHHHHHHHHHHHHHHHHHhccc
Q 002658 77 LPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKR-LKDSDSGMKEACRDSIGSLSKLYLNGK 155 (896)
Q Consensus 77 Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~Ilrr-LkDpDs~VR~Ac~~aLG~LA~~li~~~ 155 (896)
..+|+.-+. .+.+|..|..++..++..=-|-+.. +++..++.- ..|++-.||.||+-+||=+. .+
T Consensus 520 Ad~lI~el~---~dkdpilR~~Gm~t~alAy~GTgnn------kair~lLh~aVsD~nDDVrRaAVialGFVl---~~-- 585 (929)
T KOG2062|consen 520 ADPLIKELL---RDKDPILRYGGMYTLALAYVGTGNN------KAIRRLLHVAVSDVNDDVRRAAVIALGFVL---FR-- 585 (929)
T ss_pred hHHHHHHHh---cCCchhhhhhhHHHHHHHHhccCch------hhHHHhhcccccccchHHHHHHHHHheeeE---ec--
Confidence 444444443 5668999999888876654444432 223333333 78999999999999988432 12
Q ss_pred ccCCchhHhhhHHHHHHHHhc-CCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHH-
Q 002658 156 EENNGTVVGLFVKPLFEAMME-QNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSL- 233 (896)
Q Consensus 156 ~e~~~~~~~~lL~pL~eaL~E-qnk~VQ~gAasALAkIIE~a~d~~~~yL~~LlPRL~kLLks~s~kaK~alL~aIgSL- 233 (896)
-+..++..++.|.+ .|++|..|||+||.-.|-+.+.. + -+.-|.++.+++.--+|..++-+++-|
T Consensus 586 -------dp~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~--e----Ai~lLepl~~D~~~fVRQgAlIa~amIm 652 (929)
T KOG2062|consen 586 -------DPEQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLK--E----AINLLEPLTSDPVDFVRQGALIALAMIM 652 (929)
T ss_pred -------ChhhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcH--H----HHHHHhhhhcChHHHHHHHHHHHHHHHH
Confidence 24466777777765 59999999999999999865543 2 233334445666444565544444444
Q ss_pred HhccccCcccHHHHHHHHHHhhCC
Q 002658 234 SQVGAIAPQSLEPLLQSIHECLGS 257 (896)
Q Consensus 234 A~vga~~~pyle~lLp~L~e~Lsd 257 (896)
++-....-|-+..+...+.+...+
T Consensus 653 ~Q~t~~~~pkv~~frk~l~kvI~d 676 (929)
T KOG2062|consen 653 IQQTEQLCPKVNGFRKQLEKVIND 676 (929)
T ss_pred HhcccccCchHHHHHHHHHHHhhh
Confidence 443455667777888887777766
No 180
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.14 E-value=3 Score=51.45 Aligned_cols=73 Identities=19% Similarity=0.224 Sum_probs=46.8
Q ss_pred cHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcchHHHhhHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHhccCCC
Q 002658 243 SLEPLLQSIHECLGSTDWATRKAAADALSALALHSSNLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQLWKKIAGKVD 322 (896)
Q Consensus 243 yle~lLp~L~e~LsddDW~lRKaA~EaLgsLA~avGe~L~Py~~~~I~~LE~~RfDKvKpVRDaA~eALe~WK~la~~~d 322 (896)
.+..++.-|.++.++-|-+.=+.|+.|+|.+|.-..+. ..||..|...-.-|+.. ++.|++...+.+...|.
T Consensus 347 nl~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~-----~~cv~~lLell~~~~~y---vvqE~~vvi~dilRkyP 418 (734)
T KOG1061|consen 347 NLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS-----NDCVSILLELLETKVDY---VVQEAIVVIRDILRKYP 418 (734)
T ss_pred HHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh-----hhhHHHHHHHHhhcccc---eeeehhHHHHhhhhcCC
Confidence 34456666777788888888888999999999988754 66777654333333332 23345555555555553
Q ss_pred C
Q 002658 323 V 323 (896)
Q Consensus 323 ~ 323 (896)
.
T Consensus 419 ~ 419 (734)
T KOG1061|consen 419 N 419 (734)
T ss_pred C
Confidence 3
No 181
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=92.13 E-value=25 Score=40.66 Aligned_cols=213 Identities=14% Similarity=0.196 Sum_probs=127.1
Q ss_pred CChhHHHHHHHHHHHHHhcCCCCCHHHHHH-----HHhhhc--CCCChhhHHHHHHHHHHHHHHhc--ccchhhHHHHHH
Q 002658 53 ADRDTHQIAIEDLEKTIQTLSQESLPMLLN-----CLYESS--NDPKPAVKKESVRLLALVCELHS--ELTSTHVTKIIS 123 (896)
Q Consensus 53 sDRDT~k~Aa~eLD~La~~L~pd~Lp~fLs-----~L~es~--ss~k~~vRKeAIllLG~IAeg~~--d~I~P~LpkIL~ 123 (896)
.+++.+..|..-|.-++. +++.+..++. +|.-++ .+.....|.+|++++-.+.+... +.+. .-|+.
T Consensus 37 ~~~~vraa~yRilRy~i~--d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~~~~---~~vvr 111 (371)
T PF14664_consen 37 DSKEVRAAGYRILRYLIS--DEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPKEIP---RGVVR 111 (371)
T ss_pred CcHHHHHHHHHHHHHHHc--CHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCcccCC---HHHHH
Confidence 448888899888877776 3333333322 111111 23346789999999999998743 3343 34567
Q ss_pred HHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhc--CCCCc
Q 002658 124 HIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECA--SDPPV 201 (896)
Q Consensus 124 ~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~a--~d~~~ 201 (896)
.|+....+++-..|.+|.+++..|+-.-.+- -.+..-++.|++++.|..-.+.+..+.++-.+++.- +.-..
T Consensus 112 alvaiae~~~D~lr~~cletL~El~l~~P~l------v~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~tR~yl~ 185 (371)
T PF14664_consen 112 ALVAIAEHEDDRLRRICLETLCELALLNPEL------VAECGGIRVLLRALIDGSFSISESLLDTLLYLLDSPRTRKYLR 185 (371)
T ss_pred HHHHHHhCCchHHHHHHHHHHHHHHhhCHHH------HHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCcchhhhhc
Confidence 7777778899999999999988877543211 112234578888887754446666666666666642 11111
Q ss_pred h-h-HHHHHHHHHHH----hcCCc--hhhHHHHHHHHHHHHh--cc--ccCcccHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 002658 202 V-A-FQKLCARICKL----LSNQN--FMAKASLLPVVGSLSQ--VG--AIAPQSLEPLLQSIHECLGSTDWATRKAAADA 269 (896)
Q Consensus 202 ~-y-L~~LlPRL~kL----Lks~s--~kaK~alL~aIgSLA~--vg--a~~~pyle~lLp~L~e~LsddDW~lRKaA~Ea 269 (896)
+ + |+.|+--+... .+... .+.+ .+-.+|.++.. .| ....+-+ ..+..|.++|.-+...+|+..+|.
T Consensus 186 ~~~dL~~l~apftd~~~~~~~~~~~~~~l~-~s~~ai~~~LrsW~GLl~l~~~~~-~~lksLv~~L~~p~~~ir~~Ildl 263 (371)
T PF14664_consen 186 PGFDLESLLAPFTDFHYRKIKDDRELERLQ-ASAKAISTLLRSWPGLLYLSMNDF-RGLKSLVDSLRLPNPEIRKAILDL 263 (371)
T ss_pred CCccHHHHHHhhhhhhccccccchHHHHHH-HHHHHHHHHHhcCCceeeeecCCc-hHHHHHHHHHcCCCHHHHHHHHHH
Confidence 1 1 44444444443 22211 1222 23334444432 34 2223333 567888899999999999999999
Q ss_pred HHHHHHhcc
Q 002658 270 LSALALHSS 278 (896)
Q Consensus 270 LgsLA~avG 278 (896)
|..+...-.
T Consensus 264 l~dllrik~ 272 (371)
T PF14664_consen 264 LFDLLRIKP 272 (371)
T ss_pred HHHHHCCCC
Confidence 997766433
No 182
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=91.51 E-value=23 Score=41.74 Aligned_cols=241 Identities=12% Similarity=0.091 Sum_probs=132.1
Q ss_pred HHHHHHHHHHHHHcCC---ChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHhhh----c-CCCChhhHHHHHHHHHHHHHH
Q 002658 38 MVEMKQKILTSLSKLA---DRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYES----S-NDPKPAVKKESVRLLALVCEL 109 (896)
Q Consensus 38 ~~~Lk~rll~~L~KLs---DRDT~k~Aa~eLD~La~~L~pd~Lp~fLs~L~es----~-ss~k~~vRKeAIllLG~IAeg 109 (896)
+.+|-+.++..+.+-+ +...-|+.+.-|-.+-..+.| ....++..|... . +-.+|..=....-.+|.+++.
T Consensus 24 ~~~ll~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p-~~~~il~~L~~il~~v~kNPsnP~FnHylFEsi~~lir~ 102 (435)
T PF03378_consen 24 AQQLLQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDILP-IAVEILQHLTAILKEVSKNPSNPRFNHYLFESIGALIRF 102 (435)
T ss_dssp HHHHHHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTGG-GHHHHHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHh
Confidence 4567777777777642 223555555554443333322 233444444332 2 233566666678888888877
Q ss_pred hcc----cchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHh-cCCHhHHHH
Q 002658 110 HSE----LTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMM-EQNKGVQSG 184 (896)
Q Consensus 110 ~~d----~I~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~-Eqnk~VQ~g 184 (896)
..+ .+..+-+.++|.+..-|...-...--=+-..++.|.+... .+...+.+..++++|+.-.. +..-++ -|
T Consensus 103 ~~~~~~~~v~~~E~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~~~---~~~~p~~y~~L~~~Ll~p~lWe~~gni-Pa 178 (435)
T PF03378_consen 103 VCEADPEAVSQFEEALFPPFQEILQQDVQEFIPYVFQILAQLLELRP---SSPLPDAYKQLFPPLLSPALWERRGNI-PA 178 (435)
T ss_dssp S-GGGHH---HHHHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHHSS-----S--TTTGGGHHHHTSGGGGGSTTTH-HH
T ss_pred ccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC---CCCCcHHHHHHHHHHcCcchhccCCCc-Cc
Confidence 443 2445667777777777665432222222334555555552 11223445566777665442 333344 34
Q ss_pred HHHHHHHHHHhcCCCCc--hhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHh-cc-ccCcccHHHHHHHHHHhhCC-CC
Q 002658 185 AAMCMAKMVECASDPPV--VAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQ-VG-AIAPQSLEPLLQSIHECLGS-TD 259 (896)
Q Consensus 185 AasALAkIIE~a~d~~~--~yL~~LlPRL~kLLks~s~kaK~alL~aIgSLA~-vg-a~~~pyle~lLp~L~e~Lsd-dD 259 (896)
...-|.++++..+..+. ..+..++-.+-+++.+..... .....+.+++. .. ....+|+..++..|+..|+. .-
T Consensus 179 lvrLL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~~D~--~gF~LL~~iv~~~p~~~l~~yl~~I~~lll~RLq~skT 256 (435)
T PF03378_consen 179 LVRLLQAYIKKDPSFIVANNQLEPILGVFQKLIASKANDH--YGFDLLESIVENLPPEALEPYLKQIFTLLLTRLQSSKT 256 (435)
T ss_dssp HHHHHHHHHHHHGGG----S-CHHHHHHHHHHHT-TTCHH--HHHHHHHHHHHHS-HHHHGGGHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHhCchhhcchhhHHHHHHHHHHHHCCCCcch--HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhCCc
Confidence 45567777776544443 578889998899998875442 34567777763 33 46788999999999999875 34
Q ss_pred HHHHHHHHHHHHHHHHhcc-hHHHhhH
Q 002658 260 WATRKAAADALSALALHSS-NLVIDGA 285 (896)
Q Consensus 260 W~lRKaA~EaLgsLA~avG-e~L~Py~ 285 (896)
....+.-+--++.++...| +.+...+
T Consensus 257 ~kf~~~fv~F~~~~~~~~g~~~li~~i 283 (435)
T PF03378_consen 257 EKFVKRFVVFLSLFAIKYGPDFLIQTI 283 (435)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 5555566666666666666 5555444
No 183
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=91.36 E-value=29 Score=39.11 Aligned_cols=142 Identities=15% Similarity=0.185 Sum_probs=95.5
Q ss_pred CChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHhhh----c---CCCChhhHHHHHHHHHHHHHHhcccc----hhhHHHH
Q 002658 53 ADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYES----S---NDPKPAVKKESVRLLALVCELHSELT----STHVTKI 121 (896)
Q Consensus 53 sDRDT~k~Aa~eLD~La~~L~pd~Lp~fLs~L~es----~---ss~k~~vRKeAIllLG~IAeg~~d~I----~P~LpkI 121 (896)
-|.++-.+...-+.++-..+.+ .++.++..+.+. . -..-|..|..-..+|.++.+.|...+ .+.+..+
T Consensus 88 r~~evL~l~~~ii~kl~~~~~~-~v~~I~~~vf~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~ 166 (319)
T PF08767_consen 88 REPEVLSLMATIINKLGELIQP-QVPQILEAVFECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLV 166 (319)
T ss_dssp S-HHHHHHHHHHHHHHGGGCCC-CHHHHHHHHHHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHH
T ss_pred cChhHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHH
Confidence 3555666777677776665544 677777766554 2 23469999999999999999998764 4578999
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCc----hhHhhhHHHHHHHHhcC-CH---hHHHHHHHHHHHHH
Q 002658 122 ISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNG----TVVGLFVKPLFEAMMEQ-NK---GVQSGAAMCMAKMV 193 (896)
Q Consensus 122 L~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~----~~~~~lL~pL~eaL~Eq-nk---~VQ~gAasALAkII 193 (896)
+..|+.+++++...|...|+.++..|...+.....+... .++-.++.-+|..|.|. .+ ..|......|=.++
T Consensus 167 idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~~~~~~~~~F~~~y~~~il~~if~vltD~~Hk~gf~~q~~iL~~Lf~~v 246 (319)
T PF08767_consen 167 IDSIVWGFKHTNREISETGLNILLELLNNVSKTNPEFANQFYQQYYLDILQDIFSVLTDSDHKSGFKLQSQILSNLFRLV 246 (319)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHHHHHHSTT-GGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999651111111 23334445555555444 23 23443444444444
Q ss_pred Hh
Q 002658 194 EC 195 (896)
Q Consensus 194 E~ 195 (896)
|.
T Consensus 247 e~ 248 (319)
T PF08767_consen 247 ES 248 (319)
T ss_dssp HT
T ss_pred Hc
Confidence 43
No 184
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=91.23 E-value=13 Score=46.48 Aligned_cols=147 Identities=16% Similarity=0.116 Sum_probs=83.2
Q ss_pred hhHhhhHHHHHHHHhcC-CHhHHHHHHHHHHHHHHhc-CCCC-chhHH--HHHHHHHHHhcCCch--hhHHHHHHHHHHH
Q 002658 161 TVVGLFVKPLFEAMMEQ-NKGVQSGAAMCMAKMVECA-SDPP-VVAFQ--KLCARICKLLSNQNF--MAKASLLPVVGSL 233 (896)
Q Consensus 161 ~~~~~lL~pL~eaL~Eq-nk~VQ~gAasALAkIIE~a-~d~~-~~yL~--~LlPRL~kLLks~s~--kaK~alL~aIgSL 233 (896)
..+..++.+|...+... +.. ..+.||..+-.-. ++.. ..++. .|+|.|..+|..... .+--.++-++|++
T Consensus 486 ~~f~~~i~~L~~~v~~~~~ee---~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtl 562 (708)
T PF05804_consen 486 ELFVDFIGDLAKIVSSGDSEE---FVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTL 562 (708)
T ss_pred HHHHHHHHHHHHHhhcCCcHH---HHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHH
Confidence 45677889999888543 333 4444554444321 2222 34565 489999999975422 1222334455665
Q ss_pred HhccccCcccH--HHHHHHHHHhhCC--CCHHHHHHHHHHHHHHHHhcc-hHHHhh---HHHHHHHHHhhhcCCChhhHH
Q 002658 234 SQVGAIAPQSL--EPLLQSIHECLGS--TDWATRKAAADALSALALHSS-NLVIDG---ATSTLTVLEACRFDKIKPVRD 305 (896)
Q Consensus 234 A~vga~~~pyl--e~lLp~L~e~Lsd--dDW~lRKaA~EaLgsLA~avG-e~L~Py---~~~~I~~LE~~RfDKvKpVRD 305 (896)
+.-. ...+.+ ..+++.|.+.|.. +|-+ .++++++.....+- +.-..+ -.+++.+|-....||.++||.
T Consensus 563 a~d~-~~A~lL~~sgli~~Li~LL~~kqeDdE---~VlQil~~f~~ll~h~~tr~~ll~~~~~~~ylidL~~d~N~~ir~ 638 (708)
T PF05804_consen 563 ASDP-ECAPLLAKSGLIPTLIELLNAKQEDDE---IVLQILYVFYQLLFHEETREVLLKETEIPAYLIDLMHDKNAEIRK 638 (708)
T ss_pred HCCH-HHHHHHHhCChHHHHHHHHHhhCchHH---HHHHHHHHHHHHHcChHHHHHHHhccchHHHHHHHhcCCCHHHHH
Confidence 4211 111111 2456666666654 3333 34555544443333 222222 266888999999999999999
Q ss_pred HHHHHHHHH
Q 002658 306 SMNEALQLW 314 (896)
Q Consensus 306 aA~eALe~W 314 (896)
++-.+|+..
T Consensus 639 ~~d~~Ldii 647 (708)
T PF05804_consen 639 VCDNALDII 647 (708)
T ss_pred HHHHHHHHH
Confidence 988888763
No 185
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=91.17 E-value=1.8 Score=47.99 Aligned_cols=184 Identities=14% Similarity=0.129 Sum_probs=102.2
Q ss_pred HHHHHHHHHHcC-CChhHHHHHHHHHHHHHhcCCCCCHH------------HHHHHHhhhcCCCChhhHHHHHHHHHHHH
Q 002658 41 MKQKILTSLSKL-ADRDTHQIAIEDLEKTIQTLSQESLP------------MLLNCLYESSNDPKPAVKKESVRLLALVC 107 (896)
Q Consensus 41 Lk~rll~~L~KL-sDRDT~k~Aa~eLD~La~~L~pd~Lp------------~fLs~L~es~ss~k~~vRKeAIllLG~IA 107 (896)
...-++.+|+++ .+.|+.+..+..++.+...-+ .... +|-+++. .....++.+...+..+|+.++
T Consensus 56 ~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~-~~~~~~~~~~~~~~~~~~~~fl~-ll~~~D~~i~~~a~~iLt~Ll 133 (312)
T PF03224_consen 56 YASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDP-SRVELFLELAKQDDSDPYSPFLK-LLDRNDSFIQLKAAFILTSLL 133 (312)
T ss_dssp ------HHHHHH---HHHHHHHHHHHHHHHH-SS-SSHHHHHHHHH-TTH--HHHHHH-H-S-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCH-HHHHHHHHhcccccchhHHHHHH-HhcCCCHHHHHHHHHHHHHHH
Confidence 344455777888 889999999999999887533 2211 2223332 345678999999999999998
Q ss_pred HHhcccch----hhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHh-cccccCCchhHhhhHHHHHHHH-----hcC
Q 002658 108 ELHSELTS----THVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYL-NGKEENNGTVVGLFVKPLFEAM-----MEQ 177 (896)
Q Consensus 108 eg~~d~I~----P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li-~~~~e~~~~~~~~lL~pL~eaL-----~Eq 177 (896)
........ ..|+.++..+...++.++..+...|..+++.|.+.=. +..+ .-...+++|+..| ...
T Consensus 134 ~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f-----~~~~~v~~l~~iL~~~~~~~~ 208 (312)
T PF03224_consen 134 SQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVF-----WKSNGVSPLFDILRKQATNSN 208 (312)
T ss_dssp TSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHH-----HTHHHHHHHHHHHH-------
T ss_pred HcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHH-----HhcCcHHHHHHHHHhhcccCC
Confidence 87776654 4667777776666666777888899888888763210 0011 0134566677766 222
Q ss_pred --CHhHHHHHHHHHHHHHHh--c-CCCCchhHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHH
Q 002658 178 --NKGVQSGAAMCMAKMVEC--A-SDPPVVAFQKLCARICKLLSN-QNFMAKASLLPVVGSLS 234 (896)
Q Consensus 178 --nk~VQ~gAasALAkIIE~--a-~d~~~~yL~~LlPRL~kLLks-~s~kaK~alL~aIgSLA 234 (896)
+...|..++.|+=-+.=+ . ......+ ++|.|..+++. ..-|+--.++.++.-++
T Consensus 209 ~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~---~i~~L~~i~~~~~KEKvvRv~la~l~Nl~ 268 (312)
T PF03224_consen 209 SSGIQLQYQALLCLWLLSFEPEIAEELNKKY---LIPLLADILKDSIKEKVVRVSLAILRNLL 268 (312)
T ss_dssp --HHHHHHHHHHHHHHHTTSHHHHHHHHTTS---HHHHHHHHHHH--SHHHHHHHHHHHHHTT
T ss_pred CCchhHHHHHHHHHHHHhcCHHHHHHHhccc---hHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 455667888887644321 1 1111122 88889988874 44554445555555544
No 186
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=91.05 E-value=22 Score=44.88 Aligned_cols=222 Identities=16% Similarity=0.126 Sum_probs=127.3
Q ss_pred CChhHHHHHHHHHHHHHhcC--------CCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccchhhHH-HHHH
Q 002658 53 ADRDTHQIAIEDLEKTIQTL--------SQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVT-KIIS 123 (896)
Q Consensus 53 sDRDT~k~Aa~eLD~La~~L--------~pd~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I~P~Lp-kIL~ 123 (896)
+|...+=.|+.+|=.+..-- +-+.|.+.|-.|+.. ..+.-.--.|+++|..+++.++..+.-.+. ..||
T Consensus 180 ~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~--E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIP 257 (1051)
T KOG0168|consen 180 SDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSH--EHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIP 257 (1051)
T ss_pred CChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHHhhccchhheeecccchH
Confidence 56656666777666554321 222333444444422 234666778999999999999987543222 3578
Q ss_pred HHHHhhcCCC-hHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCch
Q 002658 124 HIVKRLKDSD-SGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVV 202 (896)
Q Consensus 124 ~IlrrLkDpD-s~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~a~d~~~~ 202 (896)
.++.+|.--. -.|-..|..|+--|++.=-+.+.+. --+...+..|.-=.-.+|-.|..--+.+|..++...-.
T Consensus 258 vl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~AiL~A------G~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~ 331 (1051)
T KOG0168|consen 258 VLLEKLLTIEYIDVAEQSLQALEKISRRHPKAILQA------GALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFH 331 (1051)
T ss_pred HHHHhhhhhhhhHHHHHHHHHHHHHHhhccHHHHhc------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccch
Confidence 8888876644 3567777777777765432211110 01222223332235678888888888899988766667
Q ss_pred hHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhccccCcccHHH-----HHHHHHHhhCCC----CHHHHHHHHHHHHHH
Q 002658 203 AFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEP-----LLQSIHECLGST----DWATRKAAADALSAL 273 (896)
Q Consensus 203 yL~~LlPRL~kLLks~s~kaK~alL~aIgSLA~vga~~~pyle~-----lLp~L~e~Lsdd----DW~lRKaA~EaLgsL 273 (896)
|+-..+|-|..+|.+..-|.-+...-|+.-++..-...+.-++. +|....+.|.-. +-.+--.++-+|..|
T Consensus 332 ~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~m 411 (1051)
T KOG0168|consen 332 FVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLM 411 (1051)
T ss_pred HHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHH
Confidence 88889999999999877665555555555555311112222222 222233333222 123445566677777
Q ss_pred HHhcchHHH
Q 002658 274 ALHSSNLVI 282 (896)
Q Consensus 274 A~avGe~L~ 282 (896)
+...+..|.
T Consensus 412 sS~~pl~~~ 420 (1051)
T KOG0168|consen 412 SSGSPLLFR 420 (1051)
T ss_pred ccCChHHHH
Confidence 766664443
No 187
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=90.70 E-value=0.31 Score=39.04 Aligned_cols=41 Identities=29% Similarity=0.447 Sum_probs=31.1
Q ss_pred HHHHHHHHhcccchhhHHHHHHHHHHhhcCCChHHHHHHHHHH
Q 002658 102 LLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSI 144 (896)
Q Consensus 102 lLG~IAeg~~d~I~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aL 144 (896)
+|+.+++.-+..+. .+.|+..|.++|.|+++.||.||.+.|
T Consensus 2 ~l~~iv~~dp~ll~--~~~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 2 ALSSIVEKDPTLLD--SSDVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred hHHHHHhcCccccc--hHHHHHHHHHHhcCCChHHHHHHHHHC
Confidence 45556655554443 358899999999999999999998764
No 188
>KOG1837 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.67 E-value=9.8 Score=50.38 Aligned_cols=222 Identities=14% Similarity=0.051 Sum_probs=134.8
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcC-------CCChhhHHHHHHHH-HHHHHHhcccchhhHHHHHHHHHHh
Q 002658 57 THQIAIEDLEKTIQTLSQESLPMLLNCLYESSN-------DPKPAVKKESVRLL-ALVCELHSELTSTHVTKIISHIVKR 128 (896)
Q Consensus 57 T~k~Aa~eLD~La~~L~pd~Lp~fLs~L~es~s-------s~k~~vRKeAIllL-G~IAeg~~d~I~P~LpkIL~~Ilrr 128 (896)
+.+++....-.++..|....|.+++..+.+--. ..+..-|--...-| -.+++.+.--+.||..+++--++-.
T Consensus 1365 ~E~sV~~~~v~~v~klse~~FRplf~~l~~WA~~~~~~~a~~~~~~Rli~fy~f~~~l~esl~si~~pYf~~~l~~~~~~ 1444 (1621)
T KOG1837|consen 1365 LERSVQNKAVAKVLKLSESTFRPLFSPLFDWAEPGLEAKAEQKCLERLISFYHFADYLQESLKSIVTPYFGYLLEPRVIL 1444 (1621)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcccCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 555666666667766666557666666654321 22233333322222 2234444455788888888766665
Q ss_pred hcCCC------------hHHHHHHHHHHHHHHHHHhccccc--CC-----chhHhhhHHHHHHHHhc----C--CHhHHH
Q 002658 129 LKDSD------------SGMKEACRDSIGSLSKLYLNGKEE--NN-----GTVVGLFVKPLFEAMME----Q--NKGVQS 183 (896)
Q Consensus 129 LkDpD------------s~VR~Ac~~aLG~LA~~li~~~~e--~~-----~~~~~~lL~pL~eaL~E----q--nk~VQ~ 183 (896)
|+--+ ...| -++..|+|+-.+....+. -+ .+....+..|+...+.. . ...|-.
T Consensus 1445 L~k~n~s~~~~~~~~~~~~~r--~~~~~~~Lvl~cl~~~~~~Dt~~~f~t~~r~~~~~~p~v~ql~n~~~e~~~~~~v~~ 1522 (1621)
T KOG1837|consen 1445 LKKINASKHRWFWLLPVNQSR--KPLLLGTLVLNCLKDLFLFDTIESFVTKSRFELLSYPLVSQLVNVLLEFYASDIVSK 1522 (1621)
T ss_pred HHHhhhhhhhhhhhhcccccc--hhHHHHHHHHHHHHHHHhhhhhHHHHhhhhhhhhhhhhHHHHHHhhccchhhhHHHH
Confidence 55433 2334 566677777666553211 00 02233444555555522 1 122333
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHh-ccccCcccHHHHHHHHHHhhCCCCHHH
Q 002658 184 GAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQ-VGAIAPQSLEPLLQSIHECLGSTDWAT 262 (896)
Q Consensus 184 gAasALAkIIE~a~d~~~~yL~~LlPRL~kLLks~s~kaK~alL~aIgSLA~-vga~~~pyle~lLp~L~e~LsddDW~l 262 (896)
....|++.+--.+++. +.+|..++++-..+.+.++|-.+|-.+-.+.. .|....+.+..++|.|-+.+.|++-++
T Consensus 1523 ~li~~i~~~~~a~~~d----~~pl~~k~l~~trss~~~~r~~ai~~~~~l~~~lge~~~~lL~q~iPfLaEL~ED~~~~V 1598 (1621)
T KOG1837|consen 1523 LLIAEIASDSVADKDD----LKPLNQKILKKTRSSSRKARYLAIIQVKLLYTKLGENVIVLLPQSIPFLAELMEDEDDEV 1598 (1621)
T ss_pred HHHHHHHhhccCChhh----hHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhcchhHHhhhhhhHHHHHHHhhhHHHH
Confidence 4444444433222332 66677777777777788888888877777764 566677889999999999999999999
Q ss_pred HHHHHHHHHHHHHhcchHHHhh
Q 002658 263 RKAAADALSALALHSSNLVIDG 284 (896)
Q Consensus 263 RKaA~EaLgsLA~avGe~L~Py 284 (896)
-..+.+.+-.+=...|+.|..|
T Consensus 1599 e~~~q~li~q~e~~lGE~l~~y 1620 (1621)
T KOG1837|consen 1599 ECLCQKLIRQLEEVLGEPLQSY 1620 (1621)
T ss_pred HHHHHHHHHHHHHHhchhhhhc
Confidence 8888888888888888877665
No 189
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=90.61 E-value=26 Score=40.86 Aligned_cols=107 Identities=16% Similarity=0.125 Sum_probs=70.8
Q ss_pred cCCHhHHHHHHHHHHHHHHhcC-CCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhccccCcccHHHHHHHHHHh
Q 002658 176 EQNKGVQSGAAMCMAKMVECAS-DPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHEC 254 (896)
Q Consensus 176 Eqnk~VQ~gAasALAkIIE~a~-d~~~~yL~~LlPRL~kLLks~s~kaK~alL~aIgSLA~vga~~~pyle~lLp~L~e~ 254 (896)
-.|..-|..-..=|..+++..+ .....+...|+.++.+++.++|+++=..+|.....-.-+ ..+..+-..++|.++..
T Consensus 266 ~t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n~~~~-~li~~~~~~i~p~i~~~ 344 (409)
T PF01603_consen 266 KTNSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWNNEYFL-SLISQNSRVILPIIFPA 344 (409)
T ss_dssp SS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGSHHHH-HHHHCTHHHHHHHHHHH
T ss_pred CCCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCHHHH-HHHHhChHHHHHHHHHH
Confidence 3466666666666677776543 233457788999999999999999866555543322101 12345556777777776
Q ss_pred hCC---C--CHHHHHHHHHHHHHHHHhcchHHHh
Q 002658 255 LGS---T--DWATRKAAADALSALALHSSNLVID 283 (896)
Q Consensus 255 Lsd---d--DW~lRKaA~EaLgsLA~avGe~L~P 283 (896)
|.. . +..+|..|+.+|..+...-++.|..
T Consensus 345 L~~~~~~HWn~~Vr~~a~~vl~~l~~~d~~lf~~ 378 (409)
T PF01603_consen 345 LYRNSKNHWNQTVRNLAQNVLKILMEMDPKLFDK 378 (409)
T ss_dssp HSSTTSS-SSTTHHHHHHHHHHHHHTTSHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 543 2 4459999999999999988887664
No 190
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=90.56 E-value=28 Score=37.45 Aligned_cols=186 Identities=13% Similarity=0.094 Sum_probs=107.1
Q ss_pred CCCChhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHH
Q 002658 89 NDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVK 168 (896)
Q Consensus 89 ss~k~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~ 168 (896)
...++......+.+|..++. |. - +..+.++..|......+...++..+...+..+-..= . ..+ .++.
T Consensus 11 ~~~~~~~~~~~L~~L~~l~~-~~--~-~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~---~-----r~f-~~L~ 77 (234)
T PF12530_consen 11 KISDPELQLPLLEALPSLAC-HK--N-VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKAN---D-----RHF-PFLQ 77 (234)
T ss_pred CCCChHHHHHHHHHHHHHhc-cC--c-cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhC---c-----hHH-HHHH
Confidence 34556666666666666554 22 2 556667777777777777777555544444333322 1 223 3555
Q ss_pred HHHHHH----------hcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHh-cCCchhhHHHHHHHHHHHHhcc
Q 002658 169 PLFEAM----------MEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLL-SNQNFMAKASLLPVVGSLSQVG 237 (896)
Q Consensus 169 pL~eaL----------~Eqnk~VQ~gAasALAkIIE~a~d~~~~yL~~LlPRL~kLL-ks~s~kaK~alL~aIgSLA~vg 237 (896)
+++..+ .+.....+.+.+.++..+|...++ +=..|++.+..+| ++....+++.++++|.++-...
T Consensus 78 ~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~ 153 (234)
T PF12530_consen 78 PLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAE 153 (234)
T ss_pred HHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHh
Confidence 554441 123556778889999999997655 4556888888999 6777778889999999986422
Q ss_pred -ccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcc------hHHHhhHHHHHHHHHhhhcC
Q 002658 238 -AIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSS------NLVIDGATSTLTVLEACRFD 298 (896)
Q Consensus 238 -a~~~pyle~lLp~L~e~LsddDW~lRKaA~EaLgsLA~avG------e~L~Py~~~~I~~LE~~RfD 298 (896)
-.+.... ..|...|.. ..|-.....|..+...++ +.+.-+...++..+=.....
T Consensus 154 vvd~~s~w----~vl~~~l~~---~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~ 214 (234)
T PF12530_consen 154 VVDFYSAW----KVLQKKLSL---DYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSS 214 (234)
T ss_pred hccHHHHH----HHHHHhcCC---ccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhccc
Confidence 1122222 334444433 223334444444433333 34555567777766433333
No 191
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=90.43 E-value=2.6 Score=53.00 Aligned_cols=126 Identities=13% Similarity=0.218 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHHhcCCCCC-HHHHHHHHhhhc-CCCChhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhhcCCCh
Q 002658 57 THQIAIEDLEKTIQTLSQES-LPMLLNCLYESS-NDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDS 134 (896)
Q Consensus 57 T~k~Aa~eLD~La~~L~pd~-Lp~fLs~L~es~-ss~k~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrLkDpDs 134 (896)
.+..+.-.|-++.. ..+. .-.+|+.|...+ -+....+|.--+.+++-+|..|--.+.-| +|.|-.+|+||++
T Consensus 947 vra~~vvTlakmcL--ah~~LaKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YTam~d~Y----iP~I~~~L~Dp~~ 1020 (1529)
T KOG0413|consen 947 VRAVGVVTLAKMCL--AHDRLAKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYTAMTDRY----IPMIAASLCDPSV 1020 (1529)
T ss_pred HHHHHHHHHHHHHh--hhhHHHHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHHHHHHHh----hHHHHHHhcCchH
Confidence 55556655655554 2222 222455554333 23456788888889988888665444444 5677889999999
Q ss_pred HHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHh
Q 002658 135 GMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVEC 195 (896)
Q Consensus 135 ~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~ 195 (896)
.||..+.-.|++|...-+- ..-..++-..+-+|.+.++.+..-|=-||+.++..
T Consensus 1021 iVRrqt~ilL~rLLq~~~v-------Kw~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~~ 1074 (1529)
T KOG0413|consen 1021 IVRRQTIILLARLLQFGIV-------KWNGELFIRFMLALLDANEDIRNDAKFYISEVLQS 1074 (1529)
T ss_pred HHHHHHHHHHHHHHhhhhh-------hcchhhHHHHHHHHcccCHHHHHHHHHHHHHHHhh
Confidence 9999988887777655421 11122333444555677888888888889998875
No 192
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=90.37 E-value=2.5 Score=51.68 Aligned_cols=188 Identities=17% Similarity=0.136 Sum_probs=121.3
Q ss_pred hhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhcCCHhHHHHHHHHHHHHHH
Q 002658 115 STHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVE 194 (896)
Q Consensus 115 ~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE 194 (896)
.+|-.+|+|+|++.++-+|-.||-.-..-+-.+..++.++ .+-..++|-+...+.+.|+.+.+-..-|++-++.
T Consensus 325 ~eyq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~~------~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~ 398 (690)
T KOG1243|consen 325 EEYQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLTKQ------ILNDQIFPHVALGFLDTNATLREQTLKSMAVLAP 398 (690)
T ss_pred cccccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhcCHH------hhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHh
Confidence 3477889999999999999999999999888888888543 3456788888888999999999888887777776
Q ss_pred hcCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhccccCccc-HHHHHHH-HHHhhCCCCHHHHHHHHHHHHH
Q 002658 195 CASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQS-LEPLLQS-IHECLGSTDWATRKAAADALSA 272 (896)
Q Consensus 195 ~a~d~~~~yL~~LlPRL~kLLks~s~kaK~alL~aIgSLA~vga~~~py-le~lLp~-L~e~LsddDW~lRKaA~EaLgs 272 (896)
..... ..-..|+-.|.++-.+.+-.+|..--.|+|-++. ...+. -..++.. ....+.|+-...|+++...|.+
T Consensus 399 kL~~~--~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~---~l~~~~R~~vL~~aftralkdpf~paR~a~v~~l~a 473 (690)
T KOG1243|consen 399 KLSKR--NLNGELLRYLARLQPDEHGGIRTNTTICLGKIAP---HLAASVRKRVLASAFTRALKDPFVPARKAGVLALAA 473 (690)
T ss_pred hhchh--hhcHHHHHHHHhhCccccCcccccceeeeccccc---ccchhhhccccchhhhhhhcCCCCCchhhhhHHHhh
Confidence 54322 1112344444444343444455443444444321 00000 1122222 2224677777889998888765
Q ss_pred HHHhcchHHHhhHHHHHHHHHhhhcCCChhhHHHHHHHHHHHH
Q 002658 273 LALHSSNLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQLWK 315 (896)
Q Consensus 273 LA~avGe~L~Py~~~~I~~LE~~RfDKvKpVRDaA~eALe~WK 315 (896)
.-.... ...-..+++..|.-...|..+-||+.|..+++-..
T Consensus 474 t~~~~~--~~~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl 514 (690)
T KOG1243|consen 474 TQEYFD--QSEVANKILPSLVPLTVDPEKTVRDTAEKAIRQFL 514 (690)
T ss_pred cccccc--hhhhhhhccccccccccCcccchhhHHHHHHHHHH
Confidence 544443 11224667777777788999999998666555433
No 193
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=90.31 E-value=11 Score=43.43 Aligned_cols=165 Identities=17% Similarity=0.239 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHhc-c-c--chhhHHHHHHHH-HHhhc--CC--------------------C-hHHHHHHHHHHHHHHHH
Q 002658 99 SVRLLALVCELHS-E-L--TSTHVTKIISHI-VKRLK--DS--------------------D-SGMKEACRDSIGSLSKL 150 (896)
Q Consensus 99 AIllLG~IAeg~~-d-~--I~P~LpkIL~~I-lrrLk--Dp--------------------D-s~VR~Ac~~aLG~LA~~ 150 (896)
|+.-|..+++... . . ..|||..|+..| ++.|. |. | ...|.||++-+-.|++.
T Consensus 162 al~FL~~v~~~~~~~~lf~~~~~L~~Iie~VI~Pnl~~~e~D~ElfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~ 241 (370)
T PF08506_consen 162 ALQFLSSVAESPHHKNLFENKPHLQQIIEKVIFPNLCLREEDEELFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKK 241 (370)
T ss_dssp HHHHHHHHHTSHHHHTTT-SHHHHHHHHHHTHHHHHS--HHHHHHHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcchhHHHHhCCHHHHHHHHHHhccCccCCCHHHHHHHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHH
Confidence 5556666655432 2 2 268899888744 33322 11 1 35688999999999988
Q ss_pred HhcccccCCchhHhhhHHHHHHHH---hcCCHhHHHHHHHHHHHHHHhc---CC------CCchhHH----HHHHHHHHH
Q 002658 151 YLNGKEENNGTVVGLFVKPLFEAM---MEQNKGVQSGAAMCMAKMVECA---SD------PPVVAFQ----KLCARICKL 214 (896)
Q Consensus 151 li~~~~e~~~~~~~~lL~pL~eaL---~Eqnk~VQ~gAasALAkIIE~a---~d------~~~~yL~----~LlPRL~kL 214 (896)
.-+.. ...+..++..++... ...|+....+|..-+..+.-.. .. ...+..+ .++|-|. -
T Consensus 242 ~~~~v----~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~ 316 (370)
T PF08506_consen 242 FEKQV----TSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-P 316 (370)
T ss_dssp HHHHH----HHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--
T ss_pred HhHHH----HHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhc-c
Confidence 83321 122223333333322 1346777788877776666543 11 1112222 3445544 1
Q ss_pred hcCCchhhHHHHHHHHHHHHhccccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 002658 215 LSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADAL 270 (896)
Q Consensus 215 Lks~s~kaK~alL~aIgSLA~vga~~~pyle~lLp~L~e~LsddDW~lRKaA~EaL 270 (896)
-.+.+.-.|+-++..|..+.. ..-.+.+..++|.|..+|.+++--++.-|+-|+
T Consensus 317 ~~~~~piLka~aik~~~~Fr~--~l~~~~l~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 317 DVNSHPILKADAIKFLYTFRN--QLPKEQLLQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp SS-S-HHHHHHHHHHHHHHGG--GS-HHHHHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred cCCCCcchHHHHHHHHHHHHh--hCCHHHHHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 113455677788888888754 334568889999999999999999988887764
No 194
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.20 E-value=59 Score=40.64 Aligned_cols=158 Identities=13% Similarity=0.167 Sum_probs=107.2
Q ss_pred CCCCCcchhhhHhHHHHHHHHHHHHHcC---CC---hhHHHHHHHHHHHHHhcCCCCC--HHHHHHHHhhhcCCCChhhH
Q 002658 25 NASRSSSLSSHLAMVEMKQKILTSLSKL---AD---RDTHQIAIEDLEKTIQTLSQES--LPMLLNCLYESSNDPKPAVK 96 (896)
Q Consensus 25 ~~~~~~~~s~~~~~~~Lk~rll~~L~KL---sD---RDT~k~Aa~eLD~La~~L~pd~--Lp~fLs~L~es~ss~k~~vR 96 (896)
++.++.-+++...+++.-++++.-+.+- .+ +......+-+.-.++-+++++. +...+..|.+.+++..+..|
T Consensus 267 ~~p~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~~~~~~Lg~fls~rE~NiR 346 (938)
T KOG1077|consen 267 IYPTPEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLSRAVNQLGQFLSHRETNIR 346 (938)
T ss_pred hCCCCCCchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhhcccccch
Confidence 3456667788888888888877766633 22 2244455667777777787543 88889999999988888888
Q ss_pred HHHHHHHHHHHHHhcccchhhHHHHHHHHHHhhc-CCChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHh
Q 002658 97 KESVRLLALVCELHSELTSTHVTKIISHIVKRLK-DSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMM 175 (896)
Q Consensus 97 KeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrLk-DpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~ 175 (896)
--++-.+..++.. +....-+.+=...|+..|+ ++|..||+-+++.+=.++..- ....++.-|+..|.
T Consensus 347 YLaLEsm~~L~ss--~~s~davK~h~d~Ii~sLkterDvSirrravDLLY~mcD~~----------Nak~IV~elLqYL~ 414 (938)
T KOG1077|consen 347 YLALESMCKLASS--EFSIDAVKKHQDTIINSLKTERDVSIRRRAVDLLYAMCDVS----------NAKQIVAELLQYLE 414 (938)
T ss_pred hhhHHHHHHHHhc--cchHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhchh----------hHHHHHHHHHHHHh
Confidence 7776666655553 3333333344677888899 999999999999887766543 24567777778886
Q ss_pred cCCHhHHHHHHHHHHHHHH
Q 002658 176 EQNKGVQSGAAMCMAKMVE 194 (896)
Q Consensus 176 Eqnk~VQ~gAasALAkIIE 194 (896)
.-+...++-.+.=.|-+-|
T Consensus 415 tAd~sireeivlKvAILaE 433 (938)
T KOG1077|consen 415 TADYSIREEIVLKVAILAE 433 (938)
T ss_pred hcchHHHHHHHHHHHHHHH
Confidence 5555555544444444444
No 195
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=90.15 E-value=48 Score=41.54 Aligned_cols=198 Identities=15% Similarity=0.115 Sum_probs=123.9
Q ss_pred cCCCChhhHHHHHHHHHHHHHHhc------ccchhhHHHHHHH-HHHhhc-----------CCChHHHH-----------
Q 002658 88 SNDPKPAVKKESVRLLALVCELHS------ELTSTHVTKIISH-IVKRLK-----------DSDSGMKE----------- 138 (896)
Q Consensus 88 ~ss~k~~vRKeAIllLG~IAeg~~------d~I~P~LpkIL~~-IlrrLk-----------DpDs~VR~----------- 138 (896)
.+.+-|..- .++..++.-.+.|- ..+.|||..|+.. |.+.|+ ||+--+|.
T Consensus 308 gqgqLWlsd-~~LYfi~~Fve~cv~~d~tw~l~ePhlq~ii~~vIfPllc~see~eElfEnDp~eyirry~df~d~g~sp 386 (970)
T COG5656 308 GQGQLWLSD-IELYFIDFFVELCVDADQTWRLMEPHLQYIISGVIFPLLCLSEEEEELFENDPDEYIRRYYDFFDNGLSP 386 (970)
T ss_pred hcCCeecch-HHHHHHHHHHHHHhhhHhhHhhhccHHHHHHHhhhhhhcCCChhhHHHHhcCHHHHHHHhcchhcCCCCh
Confidence 344444433 35555566555554 4589999999984 555554 33334432
Q ss_pred --HHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHh--------cCCHhHHHHHHHHHHHHHHhc--CCCCchhHH-
Q 002658 139 --ACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMM--------EQNKGVQSGAAMCMAKMVECA--SDPPVVAFQ- 205 (896)
Q Consensus 139 --Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~--------Eqnk~VQ~gAasALAkIIE~a--~d~~~~yL~- 205 (896)
|+...+..+. ...++..+..+++-+...|+ ..|+..-+||.--|+.+..-. ..+....++
T Consensus 387 dlaal~fl~~~~-------sKrke~TfqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~ 459 (970)
T COG5656 387 DLAALFFLIISK-------SKRKEETFQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEY 459 (970)
T ss_pred hHHHHHHHHHHh-------cccchhhhhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHH
Confidence 1111111111 11123446677777777772 136667789999999988832 222223343
Q ss_pred HHHHHHHHHhcCCchhhHHHHHHHHHHHHhccccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcc--hHHHh
Q 002658 206 KLCARICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSS--NLVID 283 (896)
Q Consensus 206 ~LlPRL~kLLks~s~kaK~alL~aIgSLA~vga~~~pyle~lLp~L~e~LsddDW~lRKaA~EaLgsLA~avG--e~L~P 283 (896)
.+++.+++.++++..-.|.-+...|+.+. ..=.-...+-.+......|+.+.+..++..|+.+|..+....- +++..
T Consensus 460 fiv~hv~P~f~s~ygfL~Srace~is~~e-eDfkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~sa 538 (970)
T COG5656 460 FIVNHVIPAFRSNYGFLKSRACEFISTIE-EDFKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFSA 538 (970)
T ss_pred HHHHHhhHhhcCcccchHHHHHHHHHHHH-HhcccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHHHh
Confidence 58899999999987777777777787772 1100122233444455567778999999999999999877665 88999
Q ss_pred hHHHHHHHHHh
Q 002658 284 GATSTLTVLEA 294 (896)
Q Consensus 284 y~~~~I~~LE~ 294 (896)
|++.+|+-|..
T Consensus 539 hVp~tmekLLs 549 (970)
T COG5656 539 HVPETMEKLLS 549 (970)
T ss_pred hhhHHHHHHHH
Confidence 99988886653
No 196
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.83 E-value=31 Score=46.84 Aligned_cols=193 Identities=16% Similarity=0.168 Sum_probs=124.5
Q ss_pred HHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhhcCCChHH-HHHHHHHHHHHHHHHhcccccCC
Q 002658 81 LNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGM-KEACRDSIGSLSKLYLNGKEENN 159 (896)
Q Consensus 81 Ls~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrLkDpDs~V-R~Ac~~aLG~LA~~li~~~~e~~ 159 (896)
+.++...+...+|..|=.+..+++.++-..++ .|++..+..+++..|++.+..| |---.-++|.|-++. +.-+.
T Consensus 878 ~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~--~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyv---gs~~s 952 (2067)
T KOG1822|consen 878 LTLIVNSLINPNPKLRCAAAEALARLAQVVGS--APFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYV---GSIGS 952 (2067)
T ss_pred HHHHhhhhccCChHHHHHHHHHHHHHHHhccc--cchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhc---cCCCC
Confidence 33344445678899998888888888876665 4567788899999999976544 666677888888888 33334
Q ss_pred chhHhhhHHHHHHHHhcC-CHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcC-CchhhHH--HHHHH------
Q 002658 160 GTVVGLFVKPLFEAMMEQ-NKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSN-QNFMAKA--SLLPV------ 229 (896)
Q Consensus 160 ~~~~~~lL~pL~eaL~Eq-nk~VQ~gAasALAkIIE~a~d~~~~yL~~LlPRL~kLLks-~s~kaK~--alL~a------ 229 (896)
+++...-+-.|+....|. .|.||.-+..||+-+++........|....+--+.++|-+ +...+.. ..=.|
T Consensus 953 ~qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls~p~~~~ev~q~~~R~~~~~~~ 1032 (2067)
T KOG1822|consen 953 GQHLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLSVPTSHVEVHQCYNRCFNGDDD 1032 (2067)
T ss_pred chhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCCCCcchhhhhhhhccccccchh
Confidence 455665555666666554 5699999999999999987655556666666666666644 4433221 11111
Q ss_pred HHHHH-hccccC---------cccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcc
Q 002658 230 VGSLS-QVGAIA---------PQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSS 278 (896)
Q Consensus 230 IgSLA-~vga~~---------~pyle~lLp~L~e~LsddDW~lRKaA~EaLgsLA~avG 278 (896)
++.++ .+|... .-|...++-...=.+..+|.-.-.+|+.||-.+....+
T Consensus 1033 ~~alittlgpeL~~N~~~d~t~~~rts~la~~allls~~d~lnqa~ai~clqqlhlFap 1091 (2067)
T KOG1822|consen 1033 EDALITTLGPELGPNGDKDSTSTLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAP 1091 (2067)
T ss_pred HHHHHHhcccccCCCCcccchhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcc
Confidence 11332 133222 11222222222223566788888999999999998877
No 197
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=89.62 E-value=4.2 Score=38.94 Aligned_cols=72 Identities=17% Similarity=0.325 Sum_probs=56.8
Q ss_pred hhHHHHHHHHHHhhc-CCChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhcC--CHhHHHHHHHHHHHH
Q 002658 116 THVTKIISHIVKRLK-DSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQ--NKGVQSGAAMCMAKM 192 (896)
Q Consensus 116 P~LpkIL~~IlrrLk-DpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~Eq--nk~VQ~gAasALAkI 192 (896)
.+++.|+|++.++|+ -..+..|-+|.-.++.|+... .. -+.++..|++.+... ....+.-+..||..+
T Consensus 2 ~~l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~---~L------~~~~l~~l~~~i~~~~~~~~~~~~~l~~L~~l 72 (121)
T PF12397_consen 2 DILPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKV---PL------SDEVLNALMESILKNWTQETVQRQALICLIVL 72 (121)
T ss_pred cHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhc---CC------cHHHHHHHHHHHHhccccchhHHHHHHHHHHH
Confidence 478999999999999 778899999999999999999 22 456777788887322 222246799999999
Q ss_pred HHhc
Q 002658 193 VECA 196 (896)
Q Consensus 193 IE~a 196 (896)
++.-
T Consensus 73 ~q~q 76 (121)
T PF12397_consen 73 CQSQ 76 (121)
T ss_pred HHcc
Confidence 9754
No 198
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=89.60 E-value=1.8 Score=44.73 Aligned_cols=98 Identities=13% Similarity=0.255 Sum_probs=77.2
Q ss_pred cchhhHHHHHHHHHHhhcCC-C-----------------hHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHH
Q 002658 113 LTSTHVTKIISHIVKRLKDS-D-----------------SGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAM 174 (896)
Q Consensus 113 ~I~P~LpkIL~~IlrrLkDp-D-----------------s~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL 174 (896)
.+.|||+.|+|.|..-+.=. + -.+|.+|-+++-++-..+... -.+..|+..+...|
T Consensus 2 li~~~L~~llP~ly~et~v~~elir~V~mGPFKh~vDDGLelRK~ayE~lytlLd~~~~~------~~~~~~~~~v~~GL 75 (169)
T PF08623_consen 2 LIRPHLDQLLPNLYAETKVKPELIREVDMGPFKHKVDDGLELRKAAYECLYTLLDTCLSR------IDISEFLDRVEAGL 75 (169)
T ss_dssp GTTTTHHHHHHHHHHTTS--STTEEEEEETTCEEEEEGGGHHHHHHHHHHHHHHHSTCSS------S-HHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHHHHhccCHHHheeeecCCceeeecCcHHHHHHHHHHHHHHHHHHHHh------CCHHHHHHHHHhhc
Confidence 57899999999999776542 2 478999999999998876432 12667888888888
Q ss_pred hcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcC
Q 002658 175 MEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSN 217 (896)
Q Consensus 175 ~Eqnk~VQ~gAasALAkIIE~a~d~~~~yL~~LlPRL~kLLks 217 (896)
.| ...++.-++.-|.+++...+......|+.|++.|-+.|+.
T Consensus 76 ~D-~~DIk~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~~~L~~ 117 (169)
T PF08623_consen 76 KD-EHDIKMLCHLMLSKLAQLAPEEVLQRLDSLVEPLRKTLSK 117 (169)
T ss_dssp SS--HHHHHHHHHHHHHHHHS-HHHHHHCCTTTHHHHHHHHH-
T ss_pred CC-cHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhhc
Confidence 88 8899999999999999988777777788899999988864
No 199
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=89.54 E-value=2.6 Score=40.42 Aligned_cols=89 Identities=13% Similarity=0.128 Sum_probs=68.0
Q ss_pred hHHHHHHHHHHHhcCCc----hhhHHHHHHHHHHHHhcc-ccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhc
Q 002658 203 AFQKLCARICKLLSNQN----FMAKASLLPVVGSLSQVG-AIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHS 277 (896)
Q Consensus 203 yL~~LlPRL~kLLks~s----~kaK~alL~aIgSLA~vg-a~~~pyle~lLp~L~e~LsddDW~lRKaA~EaLgsLA~av 277 (896)
++=-++.++...+++.+ +.-|..+|.+|+-++.++ .....+...++.+|...|.. .++|..|++|...+...+
T Consensus 8 ~~LGil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~~--~eL~~~al~~W~~~i~~L 85 (107)
T smart00802 8 HFLGILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALEI--PELRSLALRCWHVLIKTL 85 (107)
T ss_pred HHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc--hhHHHHHHHHHHHHHHhC
Confidence 34456777888887754 334667888999988743 55566777788888888875 459999999999999999
Q ss_pred c-hHHHhhHHHHHHHHH
Q 002658 278 S-NLVIDGATSTLTVLE 293 (896)
Q Consensus 278 G-e~L~Py~~~~I~~LE 293 (896)
. +.+.|.+++++-++.
T Consensus 86 ~~~~l~~ll~~~~~~i~ 102 (107)
T smart00802 86 KEEELGPLLDQIFAAIL 102 (107)
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 9 778888888877664
No 200
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=89.42 E-value=9.1 Score=48.97 Aligned_cols=144 Identities=13% Similarity=0.141 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHcC-C-ChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccc-h
Q 002658 39 VEMKQKILTSLSKL-A-DRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELT-S 115 (896)
Q Consensus 39 ~~Lk~rll~~L~KL-s-DRDT~k~Aa~eLD~La~~L~pd~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I-~ 115 (896)
.+||.-|+.+-+|+ + |...|. |.+-.. .+--|+..|.+ .+...+..|-.|...|+.++.++.-.- .
T Consensus 526 ~ELrpiLVFIWAKILAvD~SCQ~------dLvKe~----g~~YF~~vL~~-~~~~~~EqrtmaAFVLAviv~nf~lGQ~a 594 (1387)
T KOG1517|consen 526 RELRPILVFIWAKILAVDPSCQA------DLVKEN----GYKYFLQVLDP-SQAIPPEQRTMAAFVLAVIVRNFKLGQKA 594 (1387)
T ss_pred HhhhhhHHHHHHHHHhcCchhHH------HHHhcc----CceeEEEEecC-cCCCCHHHHHHHHHHHHHHHcccchhHHH
Confidence 57777777777777 3 432221 111110 11112222222 133446788899999999999977442 2
Q ss_pred hhHHHHHHHHHHhhcC-CChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhcCCHhHHHHHHHHHHHHHH
Q 002658 116 THVTKIISHIVKRLKD-SDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVE 194 (896)
Q Consensus 116 P~LpkIL~~IlrrLkD-pDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE 194 (896)
-.-..+|...+..|.| +++.+|+=+|-+||+|=+.+...-.. ..-......|+..|.|+.+.|-.||.-||..++.
T Consensus 595 cl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~---G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~ 671 (1387)
T KOG1517|consen 595 CLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWS---GRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLS 671 (1387)
T ss_pred hccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhc---cccccHHHHHHHHhcCccHHHHHHHHHHHHHHhc
Confidence 2224457889999999 58999999999999998877321110 1122345677888889999999999999999999
Q ss_pred hc
Q 002658 195 CA 196 (896)
Q Consensus 195 ~a 196 (896)
+.
T Consensus 672 ~~ 673 (1387)
T KOG1517|consen 672 NG 673 (1387)
T ss_pred cc
Confidence 74
No 201
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=89.29 E-value=7.8 Score=48.24 Aligned_cols=118 Identities=17% Similarity=0.107 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHhcccchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhcC
Q 002658 98 ESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQ 177 (896)
Q Consensus 98 eAIllLG~IAeg~~d~I~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~Eq 177 (896)
.|+.+|.++++-..--..=+-..|++.+++.|...+..+.-.+...|..|+-+--.. ..-.-..++++|...+..+
T Consensus 268 v~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK----~~m~~~giV~kL~kLl~s~ 343 (708)
T PF05804_consen 268 VAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENK----DEMAESGIVEKLLKLLPSE 343 (708)
T ss_pred HHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHH----HHHHHcCCHHHHHHHhcCC
Confidence 355667777775443322234667888899998777777777777777776333110 0011234788899999888
Q ss_pred CHhHHHHHHHHHHHHHHhcCCCCch-hHH-HHHHHHHHHhcCCchh
Q 002658 178 NKGVQSGAAMCMAKMVECASDPPVV-AFQ-KLCARICKLLSNQNFM 221 (896)
Q Consensus 178 nk~VQ~gAasALAkIIE~a~d~~~~-yL~-~LlPRL~kLLks~s~k 221 (896)
+..++..+...|..+..+.. ... .+. .++|+|..+|++++++
T Consensus 344 ~~~l~~~aLrlL~NLSfd~~--~R~~mV~~GlIPkLv~LL~d~~~~ 387 (708)
T PF05804_consen 344 NEDLVNVALRLLFNLSFDPE--LRSQMVSLGLIPKLVELLKDPNFR 387 (708)
T ss_pred CHHHHHHHHHHHHHhCcCHH--HHHHHHHCCCcHHHHHHhCCCchH
Confidence 88888888888877765421 112 222 2778888889877654
No 202
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=88.83 E-value=29 Score=42.37 Aligned_cols=177 Identities=9% Similarity=0.153 Sum_probs=106.1
Q ss_pred hhhcCCCChhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHh
Q 002658 85 YESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVG 164 (896)
Q Consensus 85 ~es~ss~k~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~ 164 (896)
+...+..-...||.+-.++... ..+.+...+-+++..|+..=+.|. +-+-...-+.++..+.... .+++.+.+.
T Consensus 17 f~k~Q~s~aGhrk~~a~l~~~~---t~~~f~~~flr~vn~IL~~Kk~~s--i~dRil~fl~~f~~Y~~~~-dpeg~~~V~ 90 (885)
T COG5218 17 FNKIQQSSAGHRKSLAELMEML---TAHEFSEEFLRVVNTILACKKNPS--IPDRILSFLKRFFEYDMPD-DPEGEELVA 90 (885)
T ss_pred HHHHhhhhhhHHHHHHHHHHHH---HHHhhHHHHHHHHHHhhccccCCC--cHHHHHHHHHHHHHhcCCC-ChhhhHHHH
Confidence 3444444567888888777766 223444555566666666655443 3333444566666655332 223456677
Q ss_pred hhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhccccCcccH
Q 002658 165 LFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSL 244 (896)
Q Consensus 165 ~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~a~d~~~~yL~~LlPRL~kLLks~s~kaK~alL~aIgSLA~vga~~~pyl 244 (896)
.++.-++..+..++++|..-.|.-|+.+.++.++.+....+-|+.+|.+-+=+.-..+|-.++-|+.-+-... .-..
T Consensus 91 ~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~-~nee-- 167 (885)
T COG5218 91 GTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEME-LNEE-- 167 (885)
T ss_pred HHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcc-CChH--
Confidence 7777777777889999999999999999999877666666667777766554444445555566665553211 1111
Q ss_pred HHHHHHHHHhhC-CCCHHHHHHHHHHH
Q 002658 245 EPLLQSIHECLG-STDWATRKAAADAL 270 (896)
Q Consensus 245 e~lLp~L~e~Ls-ddDW~lRKaA~EaL 270 (896)
..+...|...+. |+.-++|+.|+-.|
T Consensus 168 n~~~n~l~~~vqnDPS~EVRr~allni 194 (885)
T COG5218 168 NRIVNLLKDIVQNDPSDEVRRLALLNI 194 (885)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHe
Confidence 112223333333 45667777776543
No 203
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=88.64 E-value=55 Score=38.21 Aligned_cols=217 Identities=11% Similarity=0.087 Sum_probs=135.6
Q ss_pred CCChhhHHHHHHHHHHHHHHhcc-cchhhHH-HHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhH
Q 002658 90 DPKPAVKKESVRLLALVCELHSE-LTSTHVT-KIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFV 167 (896)
Q Consensus 90 s~k~~vRKeAIllLG~IAeg~~d-~I~P~Lp-kIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL 167 (896)
++.|+.-.-+...|-...+.... ....|+. +.+-.++..|.-+|+.-|+.....+-++-...... -.-+...+-
T Consensus 101 e~~WpHL~~vY~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~----r~~Ir~~i~ 176 (409)
T PF01603_consen 101 EPSWPHLQLVYEILLRFIESPPFDPAKKYIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNL----RSFIRKSIN 176 (409)
T ss_dssp -TTHHHHHHHHHHHHHHHTSTT--CCTTTS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTT----HHHHHHHHH
T ss_pred ccccHhHHHHHHHHHHHHHCccccHHHHHcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhh----HHHHHHHHH
Confidence 44577666666666666555442 2233443 67888999999999999999999999887776332 012233344
Q ss_pred HHHHHHHhcC-CHhHHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHHhcCCchhh-HHHHHHHHHHHHhccccCcccH
Q 002658 168 KPLFEAMMEQ-NKGVQSGAAMCMAKMVECASDPP-VVAFQKLCARICKLLSNQNFMA-KASLLPVVGSLSQVGAIAPQSL 244 (896)
Q Consensus 168 ~pL~eaL~Eq-nk~VQ~gAasALAkIIE~a~d~~-~~yL~~LlPRL~kLLks~s~ka-K~alL~aIgSLA~vga~~~pyl 244 (896)
..|++.+.+. ....-.-...-|..++.+...+. .++...+.--|+++.+.+++.. ...+..|+..+.. .-+...
T Consensus 177 ~~~~~fi~e~~~~~gI~elLeil~sii~gf~~plk~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~---kdp~l~ 253 (409)
T PF01603_consen 177 NIFYRFIYETERHNGIAELLEILGSIINGFAVPLKEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLE---KDPSLA 253 (409)
T ss_dssp HHHHHHHHTTS--STHHHHHHHHHHHHTT--SS--HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHH---H-GGGH
T ss_pred HHHHHHhcCcccccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHH---hCchhH
Confidence 4444555433 33344445556667776643333 3466667777788888876653 4567777777653 334456
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcc-hHHHhhHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHH
Q 002658 245 EPLLQSIHECLGSTDWATRKAAADALSALALHSS-NLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQLWKK 316 (896)
Q Consensus 245 e~lLp~L~e~LsddDW~lRKaA~EaLgsLA~avG-e~L~Py~~~~I~~LE~~RfDKvKpVRDaA~eALe~WK~ 316 (896)
..++..|+..-.-.+..---.-++-|..|....+ +.|.....++.+.+-.|-.-..- .+|.+||.+|..
T Consensus 254 ~~~i~~llk~WP~t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~h~---qVAErAl~~w~n 323 (409)
T PF01603_consen 254 EPVIKGLLKHWPKTNSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSPHF---QVAERALYFWNN 323 (409)
T ss_dssp HHHHHHHHHHS-SS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSSSH---HHHHHHHGGGGS
T ss_pred HHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHCC
Confidence 6777777777555555555566677888888777 77888888888888777766665 578889999975
No 204
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=88.62 E-value=22 Score=42.85 Aligned_cols=189 Identities=11% Similarity=0.100 Sum_probs=115.4
Q ss_pred HHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhhcCCChHHHH-HHHHHHHHHHHHHhccc
Q 002658 77 LPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKE-ACRDSIGSLSKLYLNGK 155 (896)
Q Consensus 77 Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrLkDpDs~VR~-Ac~~aLG~LA~~li~~~ 155 (896)
+..|+.-|.+..-+.++..|++|+..|.+-.- +-..||+++-+|-....-.-. .|+ .-...+.+++.-+.+..
T Consensus 205 lQlYy~~It~a~~g~~~~~r~eAL~sL~TDsG-----L~~LlPyFv~fIae~vs~ni~-~~nL~lL~~lm~m~rSLl~Np 278 (576)
T KOG2549|consen 205 LQLYYKEITEACTGSDEPLRQEALQSLETDSG-----LQQLLPYFVTFIAEGVSVNIV-QNNLELLIYLMRMVRSLLDNP 278 (576)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhhccCcc-----HHHHHHHHHHHHhhheeeccc-cccHHHHHHHHHHHHHHhcCC
Confidence 56777777777667888999999988855332 445556666666555543311 122 23345777777777754
Q ss_pred ccCCchhHhhhHHHHHHHHhc----------CCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchhhHHH
Q 002658 156 EENNGTVVGLFVKPLFEAMME----------QNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKAS 225 (896)
Q Consensus 156 ~e~~~~~~~~lL~pL~eaL~E----------qnk~VQ~gAasALAkIIE~a~d~~~~yL~~LlPRL~kLLks~s~kaK~a 225 (896)
.-..+.++..++|.|+.++.. +...+-..||.-|..+|..-.+.-...-..+...|.++|.++. +.=..
T Consensus 279 ~i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~-~~~st 357 (576)
T KOG2549|consen 279 NIFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDNK-KPLST 357 (576)
T ss_pred ccchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCC-CCchh
Confidence 334568899999999999843 2455778899999999987655433333345555666665441 12235
Q ss_pred HHHHHHHHHhcc-----ccCcccHHHHHHHHHHhhCC----------CCHHHHHHHHHHHHH
Q 002658 226 LLPVVGSLSQVG-----AIAPQSLEPLLQSIHECLGS----------TDWATRKAAADALSA 272 (896)
Q Consensus 226 lL~aIgSLA~vg-----a~~~pyle~lLp~L~e~Lsd----------dDW~lRKaA~EaLgs 272 (896)
.|++|..++..| ....|.+..+--.|..-+.. +.|.++.+-.+++..
T Consensus 358 ~YGai~gL~~lg~~~I~~~ilp~L~~~~~~l~~~l~~~~~~n~~~i~ea~~v~~~llk~~~~ 419 (576)
T KOG2549|consen 358 HYGAIAGLSELGHEVIRTVILPNLKEYNERLQSVLDVESLSNQLDIYEANKVYGALLKAENP 419 (576)
T ss_pred hhhHHHHHHHhhhhhhhheeccchHHHHHHhhhhcccchhhhhhhhhhhhhHHHHHHHHhhH
Confidence 677777776554 12355555555444443322 235555555555554
No 205
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=88.61 E-value=7.3 Score=46.90 Aligned_cols=168 Identities=15% Similarity=0.145 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHh
Q 002658 96 KKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMM 175 (896)
Q Consensus 96 RKeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~ 175 (896)
.+.....|..++......-.+.|..+...+...- ....+|.+-.++|++....- -+.-+.+.+.
T Consensus 342 ~~~~~~~f~~Lv~~lr~l~~~~L~~l~~~~~~~~--~~~~~r~~~lDal~~aGT~~--------------av~~i~~~I~ 405 (618)
T PF01347_consen 342 SKETLSKFSRLVRLLRTLSYEDLEELYKQLKSKS--KKEQARKIFLDALPQAGTNP--------------AVKFIKDLIK 405 (618)
T ss_dssp -TTHHHHHHHHHHHHTTS-HHHHHHHHHHHTTS-----HHHHHHHHHHHHHH-SHH--------------HHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc--cHHHHHHHHHHHHHHcCCHH--------------HHHHHHHHHH
Confidence 3444444666666555554444444443322221 25667777777766533222 2233344443
Q ss_pred cCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCC----chhhHHHHHHHHHHHHh-cc-------------
Q 002658 176 EQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQ----NFMAKASLLPVVGSLSQ-VG------------- 237 (896)
Q Consensus 176 Eqnk~VQ~gAasALAkIIE~a~d~~~~yL~~LlPRL~kLLks~----s~kaK~alL~aIgSLA~-vg------------- 237 (896)
. ++--..-|+..|..+.-....+..++ +..+..+++++ +..++..++-++++++. ..
T Consensus 406 ~-~~~~~~ea~~~l~~l~~~~~~Pt~e~----l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~ 480 (618)
T PF01347_consen 406 S-KKLTDDEAAQLLASLPFHVRRPTEEL----LKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCS 480 (618)
T ss_dssp T-T-S-HHHHHHHHHHHHHT-----HHH----HHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------
T ss_pred c-CCCCHHHHHHHHHHHHhhcCCCCHHH----HHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccc
Confidence 2 22222224444555555444444344 44445555543 34567777878888862 11
Q ss_pred -ccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcc-hHHHhh
Q 002658 238 -AIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSS-NLVIDG 284 (896)
Q Consensus 238 -a~~~pyle~lLp~L~e~LsddDW~lRKaA~EaLgsLA~avG-e~L~Py 284 (896)
.....|++.+...|.+..+..|-..+..++.+||.+..-.- +.|.||
T Consensus 481 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~~~~i~~l~~~ 529 (618)
T PF01347_consen 481 RCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGHPESIPVLLPY 529 (618)
T ss_dssp SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-GGGHHHHHTT
T ss_pred hhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCCchhhHHHHhH
Confidence 12345666666666666677788889999999999875333 445554
No 206
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=88.60 E-value=9.1 Score=53.14 Aligned_cols=265 Identities=11% Similarity=0.094 Sum_probs=143.3
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHHHhcC---CCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccchhh
Q 002658 41 MKQKILTSLSKLADRDTHQIAIEDLEKTIQTL---SQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTH 117 (896)
Q Consensus 41 Lk~rll~~L~KLsDRDT~k~Aa~eLD~La~~L---~pd~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I~P~ 117 (896)
+.+.+...+.-. |-++..+|...+-.++... .++.+..-..++.+-..+..-.-|-+|+.+++..+.-.+....|+
T Consensus 94 ~~n~l~~l~~~~-~~~~~~~a~~~~~l~~~~~~~~~~~~v~~~~k~~~ew~~~~~~~~~~~a~~~~~~l~~~~P~~~~~~ 172 (2341)
T KOG0891|consen 94 LANYLRYLLPSN-DVEVMELAAKSLGLLAAPGKTKTAELVDFEVKRLIEWLGERQEYRRLAAVLIIKELADNVPTFFYPY 172 (2341)
T ss_pred HHHHHHHhhccC-ChHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhHhhcCcHHHHHH
Confidence 334444333333 6777777777776666432 122222223344333333344556779999999999999999999
Q ss_pred HHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhcCCHhHH-H-----HHHHHHHH
Q 002658 118 VTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQ-S-----GAAMCMAK 191 (896)
Q Consensus 118 LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~Eqnk~VQ-~-----gAasALAk 191 (896)
+++++..|...+.|+++.+|..||.++......+.+.+ ....+..+..+...-+.... . ++...+..
T Consensus 173 ~~~~~~~i~~~~~~~~~~i~~~a~~al~~~~~~~~~~~-------~~~~~~~~~rcvd~~~~~l~~~~~~~~~~~~~~~e 245 (2341)
T KOG0891|consen 173 VNKFFKNIFAALRDPKPAIRLQACSALHAVLSSLAQRE-------AKLKPQWYQRCVDEARHGLSSDGVKIHASLLVYNE 245 (2341)
T ss_pred HHHHHHHHHHhccCCChhhhHHHHHHHHHHHhhhhhcc-------chhhhHHHHHHHHhccccccchHHHhhhHHHHHHH
Confidence 99999999999999999999999999998887774322 11122333333322111111 1 11111111
Q ss_pred HHHhcCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcc-ccC-cccHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 002658 192 MVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVG-AIA-PQSLEPLLQSIHECLGSTDWATRKAAADA 269 (896)
Q Consensus 192 IIE~a~d~~~~yL~~LlPRL~kLLks~s~kaK~alL~aIgSLA~vg-a~~-~pyle~lLp~L~e~LsddDW~lRKaA~Ea 269 (896)
++... +.....++..+-+..+.-......+...+..-+.-++... ..| .-|+...|..++.++...+ -.+...
T Consensus 246 ~~~~~-~~~~~~~~~~~~~~~~~~~lk~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~----~~~~~~ 320 (2341)
T KOG0891|consen 246 LLRIS-DPFLEKYDSTCVRQAKGKLLKSIVIRMTLSQILPLLAAFNPAKFQVKYLHTEMDHLLSILRKEK----TRAFVS 320 (2341)
T ss_pred HHHHH-HHHHHhhHHHHHHHHHHHHhccccHHHHHHhccHHHhhhhhhhhHHHHHHHHHHHHHHhhhccc----hhHHHH
Confidence 11111 1111112223322222222111112212111222222211 111 3677777777777766433 678889
Q ss_pred HHHHHHhcchHHHhhHHHHHHHHHh-hhcC-CChhhHHHHHHHHHHHHHhc
Q 002658 270 LSALALHSSNLVIDGATSTLTVLEA-CRFD-KIKPVRDSMNEALQLWKKIA 318 (896)
Q Consensus 270 LgsLA~avGe~L~Py~~~~I~~LE~-~RfD-KvKpVRDaA~eALe~WK~la 318 (896)
|+.||.+++..+.||...+...+.. .+.+ ....-|+.....|..|...+
T Consensus 321 i~~ia~al~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~a 371 (2341)
T KOG0891|consen 321 IGEIAVALGSSMSPYLSNILDHIRQTLPTKDLARKKFEKSVFTCIGLLASA 371 (2341)
T ss_pred HHHHHHHhhhhhhhhhcchhhhhhhcchhhhHHHHhcchhHHHHHHHHhhc
Confidence 9999999999999998775544431 1111 11112355556666666554
No 207
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=88.42 E-value=56 Score=38.65 Aligned_cols=217 Identities=12% Similarity=0.142 Sum_probs=118.9
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCC-ChhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhhcCCC-h
Q 002658 57 THQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDP-KPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSD-S 134 (896)
Q Consensus 57 T~k~Aa~eLD~La~~L~pd~Lp~fLs~L~es~ss~-k~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrLkDpD-s 134 (896)
.|--|+++|...+..++.+.++.+-.+..+-.... ...+|++++.+|..++++.......-= ..+.+.+.++. +
T Consensus 6 ~R~~a~~~l~~~i~~~~~~~i~~iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~~~R----~~fF~~I~~~~~~ 81 (464)
T PF11864_consen 6 ERIKAAEELCESIQKYPLSSIEEIWYAAKDLIDPNQPSEARRAALELLIACIKRQDSSSGLMR----AEFFRDISDPSND 81 (464)
T ss_pred HHHHHHHHHHHHHHhCCchHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccHHHH----HHHHHHHhcCCCc
Confidence 34567777777777777666777666666555433 355999999999999998876433222 22333334331 2
Q ss_pred HHHHHHHHHHHHHHHHHhcc-cc-cCCchhHhhhHHHHHHHHhc-------------CCH---hHHHHHHHHHHHHHHh-
Q 002658 135 GMKEACRDSIGSLSKLYLNG-KE-ENNGTVVGLFVKPLFEAMME-------------QNK---GVQSGAAMCMAKMVEC- 195 (896)
Q Consensus 135 ~VR~Ac~~aLG~LA~~li~~-~~-e~~~~~~~~lL~pL~eaL~E-------------qnk---~VQ~gAasALAkIIE~- 195 (896)
..=..-.+++..|..+.-+- ++ .+....+...+.+++++... .+. ....+.+.-|=.++-+
T Consensus 82 ~d~~~~l~aL~~LT~~Grdi~~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~nv 161 (464)
T PF11864_consen 82 DDFDLRLEALIALTDNGRDIDFFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLVNV 161 (464)
T ss_pred hhHHHHHHHHHHHHcCCcCchhcccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHHHHHH
Confidence 22234445555555554221 11 11222333344444422210 000 0122223333333333
Q ss_pred c----CCCCchhHHHHHHHHHHHhcCCchh-hHHHHHHHHHHHHhccccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 002658 196 A----SDPPVVAFQKLCARICKLLSNQNFM-AKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADAL 270 (896)
Q Consensus 196 a----~d~~~~yL~~LlPRL~kLLks~s~k-aK~alL~aIgSLA~vga~~~pyle~lLp~L~e~LsddDW~lRKaA~EaL 270 (896)
. .....+.+..|+.+++.+-+..+.. .=.++|.++.+++.-|..=...+..++..|....... .+.+.+-+++
T Consensus 162 iKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~sl~~~i~vLCsi~~~~--~l~~~~w~~m 239 (464)
T PF11864_consen 162 IKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSESLSPCIEVLCSIVNSV--SLCKPSWRTM 239 (464)
T ss_pred HhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHHHHHHHHHHhhHhccc--ccchhHHHHH
Confidence 2 2233467888888888884433222 1146788888887666444667778888887775444 5666777788
Q ss_pred HHHHH-hcch
Q 002658 271 SALAL-HSSN 279 (896)
Q Consensus 271 gsLA~-avGe 279 (896)
..|+. +.|.
T Consensus 240 ~nL~~S~~g~ 249 (464)
T PF11864_consen 240 RNLLKSHLGH 249 (464)
T ss_pred HHHHcCccHH
Confidence 88774 3343
No 208
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=88.14 E-value=30 Score=39.62 Aligned_cols=178 Identities=12% Similarity=0.129 Sum_probs=103.5
Q ss_pred hhhHHH---HHHHHHHHHHH-hcccchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchh----Hh
Q 002658 93 PAVKKE---SVRLLALVCEL-HSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTV----VG 164 (896)
Q Consensus 93 ~~vRKe---AIllLG~IAeg-~~d~I~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~----~~ 164 (896)
...|+- |+.+|..+-.. .+-.+ .|.++|.+.++|..+|..|..-+|..+|+|.+.+-.. ...++ -.
T Consensus 54 enhrekttlcVscLERLfkakegahl---apnlmpdLQrGLiaddasVKiLackqigcilEdcDtn---aVseillvvNa 127 (524)
T KOG4413|consen 54 ENHREKTTLCVSCLERLFKAKEGAHL---APNLMPDLQRGLIADDASVKILACKQIGCILEDCDTN---AVSEILLVVNA 127 (524)
T ss_pred ccccchhhhHHHHHHHHHhhccchhh---chhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchh---hHHHHHHHhhh
Confidence 345666 44444444332 22234 4556999999999999999999999999999988211 11111 34
Q ss_pred hhHHHHHHHHhcCCHhHHHHHHHHHHHHHHh---cCCC-CchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhccccC
Q 002658 165 LFVKPLFEAMMEQNKGVQSGAAMCMAKMVEC---ASDP-PVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVGAIA 240 (896)
Q Consensus 165 ~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~---a~d~-~~~yL~~LlPRL~kLLks~s~kaK~alL~aIgSLA~vga~~ 240 (896)
.+++.++.+++..+-.|-.+|.-.+..+--. +.-. ..+.++.+--|-+.+-- +.-+|.-.|.+|--++.+....
T Consensus 128 eilklildcIggeddeVAkAAiesikrialfpaaleaiFeSellDdlhlrnlaakc--ndiaRvRVleLIieifSiSpes 205 (524)
T KOG4413|consen 128 EILKLILDCIGGEDDEVAKAAIESIKRIALFPAALEAIFESELLDDLHLRNLAAKC--NDIARVRVLELIIEIFSISPES 205 (524)
T ss_pred hHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcHHHHHHhcccccCChHHHhHHHhhh--hhHHHHHHHHHHHHHHhcCHHH
Confidence 6889999999888888888877766655422 1000 01122222211111111 2223444566666555443111
Q ss_pred cccHH--HHHHHHHHhhCC-CCHHHHHHHHHHHHHHHHhcc
Q 002658 241 PQSLE--PLLQSIHECLGS-TDWATRKAAADALSALALHSS 278 (896)
Q Consensus 241 ~pyle--~lLp~L~e~Lsd-dDW~lRKaA~EaLgsLA~avG 278 (896)
..|.. .++..|..-|+- +|.-+|..++|....++....
T Consensus 206 aneckkSGLldlLeaElkGteDtLVianciElvteLaeteH 246 (524)
T KOG4413|consen 206 ANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEH 246 (524)
T ss_pred HhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhh
Confidence 11211 244444444554 678889999999998887655
No 209
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.02 E-value=52 Score=41.07 Aligned_cols=217 Identities=17% Similarity=0.176 Sum_probs=132.5
Q ss_pred CCChhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHH
Q 002658 90 DPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKP 169 (896)
Q Consensus 90 s~k~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~p 169 (896)
+....+|+.+-++|=.+-+..+|.+.| ..-..-|+..|.|.+-.|--|+...|-.|+....+.. ..-++..+..
T Consensus 159 ~~~~~vkqkaALclL~L~r~spDl~~~--~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~y----k~~~~~avs~ 232 (938)
T KOG1077|consen 159 SSMDYVKQKAALCLLRLFRKSPDLVNP--GEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESY----KTCLPLAVSR 232 (938)
T ss_pred cchHHHHHHHHHHHHHHHhcCccccCh--hhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHH----hhhHHHHHHH
Confidence 344678887777777888888888765 1224556678888887777777766777766652210 0011222222
Q ss_pred HHHHHhc-------------CCHhHHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHHhcC----Cc---hhhHHH-HH
Q 002658 170 LFEAMME-------------QNKGVQSGAAMCMAKMVECASDPP-VVAFQKLCARICKLLSN----QN---FMAKAS-LL 227 (896)
Q Consensus 170 L~eaL~E-------------qnk~VQ~gAasALAkIIE~a~d~~-~~yL~~LlPRL~kLLks----~s---~kaK~a-lL 227 (896)
|...... ++|=.|.-.+..|... .-..|.. ..-|..++.+++...+. .+ .-++.+ +.
T Consensus 233 L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~-p~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLF 311 (938)
T KOG1077|consen 233 LSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIY-PTPEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLF 311 (938)
T ss_pred HHHHHhhcccchhhceeecCCChHHHHHHHHHHHhC-CCCCCchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHH
Confidence 2222211 3566676666665544 1111111 12344445555444442 12 224443 44
Q ss_pred HHHHHHHhccccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcc--hHHHhhHHHHHHHHHhhhcCCChhhHH
Q 002658 228 PVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSS--NLVIDGATSTLTVLEACRFDKIKPVRD 305 (896)
Q Consensus 228 ~aIgSLA~vga~~~pyle~lLp~L~e~LsddDW~lRKaA~EaLgsLA~avG--e~L~Py~~~~I~~LE~~RfDKvKpVRD 305 (896)
++|.-++.. +..+..+...+..|.++|++.+..+|=-|+|.+..|+.... +.+.-|.+.+|..|. -+++-.||.
T Consensus 312 eaI~l~~h~-D~e~~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h~d~Ii~sLk---terDvSirr 387 (938)
T KOG1077|consen 312 EAISLAIHL-DSEPELLSRAVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKHQDTIINSLK---TERDVSIRR 387 (938)
T ss_pred HHHHHHHHc-CCcHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHHHHHHHHHhc---cccchHHHH
Confidence 555544432 34566778889999999999999999999999999999866 777777666666654 466666665
Q ss_pred HHHHHHHHHHHhccC
Q 002658 306 SMNEALQLWKKIAGK 320 (896)
Q Consensus 306 aA~eALe~WK~la~~ 320 (896)
+|+++.=.++++
T Consensus 388 ---ravDLLY~mcD~ 399 (938)
T KOG1077|consen 388 ---RAVDLLYAMCDV 399 (938)
T ss_pred ---HHHHHHHHHhch
Confidence 488888888866
No 210
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=87.93 E-value=49 Score=37.62 Aligned_cols=80 Identities=14% Similarity=0.251 Sum_probs=54.3
Q ss_pred cchhhHHHHHHHHHHhh------cCCCh----HHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhcCCH--h
Q 002658 113 LTSTHVTKIISHIVKRL------KDSDS----GMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNK--G 180 (896)
Q Consensus 113 ~I~P~LpkIL~~IlrrL------kDpDs----~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~Eqnk--~ 180 (896)
++.||+.++||.|+.+| .+|+- .+|+.|++.++-......... ...-|.+...|+.+..+.++ .
T Consensus 270 FvdPY~hqlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~Y----ktLkPRvtrTllKafLD~~k~~s 345 (450)
T COG5095 270 FVDPYLHQLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSSY----KTLKPRVTRTLLKAFLDREKTES 345 (450)
T ss_pred eecHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHhh----hhhchHHHHHHHHHHHhcccccc
Confidence 36899999999988775 23443 478888887777666662210 12245566667777765544 5
Q ss_pred HHHHHHHHHHHHHHhc
Q 002658 181 VQSGAAMCMAKMVECA 196 (896)
Q Consensus 181 VQ~gAasALAkIIE~a 196 (896)
.|.||.-||..+-...
T Consensus 346 T~YGalkgls~l~ke~ 361 (450)
T COG5095 346 TQYGALKGLSILSKEV 361 (450)
T ss_pred hhhhhhhhhhhhchhh
Confidence 8999999998877543
No 211
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.88 E-value=3.3 Score=50.76 Aligned_cols=151 Identities=15% Similarity=0.136 Sum_probs=101.2
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccc--cCCchhHhhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCC-C
Q 002658 123 SHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKE--ENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASD-P 199 (896)
Q Consensus 123 ~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~--e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~a~d-~ 199 (896)
|+|.|+|+-+++.||.-|+..+-.+-... +|.. ++.+..+..=..-|+..|.++.+.|...|..-+.+++-.-=. .
T Consensus 177 p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~-dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~i 255 (1005)
T KOG1949|consen 177 PILWRGLKARNSEVRSNAALLFVEAFPIR-DPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMI 255 (1005)
T ss_pred HHHHHhhccCchhhhhhHHHHHHHhccCC-CCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHc
Confidence 67888999999999998887665444333 2211 111122333334555666788888887766666666643211 2
Q ss_pred CchhHHHHHHHHHHHhcCC-chhhHHHHHHHHHHHHhccccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 002658 200 PVVAFQKLCARICKLLSNQ-NFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALAL 275 (896)
Q Consensus 200 ~~~yL~~LlPRL~kLLks~-s~kaK~alL~aIgSLA~vga~~~pyle~lLp~L~e~LsddDW~lRKaA~EaLgsLA~ 275 (896)
+...+-+|+-+++.=+.+. ...+|.+...+|.-++.. ....+.++.++|.|-..|.|..-.+|-|+.|+|..|-.
T Consensus 256 P~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~n-p~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik~ 331 (1005)
T KOG1949|consen 256 PPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDN-PLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIKA 331 (1005)
T ss_pred CHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcC-ccchhHHHHHHHhcchhhhccchhHHHHHHHHHHHHHh
Confidence 2235667777777666543 446777777777776532 45678899999999999999999999999999877643
No 212
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=87.84 E-value=4.2 Score=50.18 Aligned_cols=189 Identities=14% Similarity=0.111 Sum_probs=125.3
Q ss_pred CCChhhHHHHHHHHHHHHHHhccc--chh--------hHHHH-------------------HHHHHHhhcCCChHHHHHH
Q 002658 90 DPKPAVKKESVRLLALVCELHSEL--TST--------HVTKI-------------------ISHIVKRLKDSDSGMKEAC 140 (896)
Q Consensus 90 s~k~~vRKeAIllLG~IAeg~~d~--I~P--------~LpkI-------------------L~~IlrrLkDpDs~VR~Ac 140 (896)
.++.-.-++|+.++|.+.-|+... +.. +-++| -+.|...+.|.||.+|..-
T Consensus 460 ~D~AvsGEAAgi~MGl~mlGt~~~eaiedm~~Ya~ETQHeki~RGl~vGiaL~~ygrqe~Ad~lI~el~~dkdpilR~~G 539 (929)
T KOG2062|consen 460 NDSAVSGEAAGIAMGLLMLGTANQEAIEDMLTYAQETQHEKIIRGLAVGIALVVYGRQEDADPLIKELLRDKDPILRYGG 539 (929)
T ss_pred ccchhhhhHHHHhhhhHhhCcCcHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHhhhhhhhHHHHHHHhcCCchhhhhhh
Confidence 444555677777777777666532 221 12222 2456777888999999776
Q ss_pred HHHHHHHHHHHhcccccCCchhHhhhHHHHHHH-HhcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhc-CC
Q 002658 141 RDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEA-MMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLS-NQ 218 (896)
Q Consensus 141 ~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~ea-L~Eqnk~VQ~gAasALAkIIE~a~d~~~~yL~~LlPRL~kLLk-s~ 218 (896)
..+++ + .++ +. + -...++.|+-. +.+.|-.|.-+|..||.-+|-..+ ..||+.+.+|. +-
T Consensus 540 m~t~a-l-Ay~---GT-g----nnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp--------~~~~s~V~lLses~ 601 (929)
T KOG2062|consen 540 MYTLA-L-AYV---GT-G----NNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDP--------EQLPSTVSLLSESY 601 (929)
T ss_pred HHHHH-H-HHh---cc-C----chhhHHHhhcccccccchHHHHHHHHHheeeEecCh--------hhchHHHHHHhhhc
Confidence 65544 2 222 11 1 12344444444 578999999999999988875433 36788888885 45
Q ss_pred chhhHHHHHHHHHHHHhccccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcchHHHhhHHHHHHHHHhhhcC
Q 002658 219 NFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSSNLVIDGATSTLTVLEACRFD 298 (896)
Q Consensus 219 s~kaK~alL~aIgSLA~vga~~~pyle~lLp~L~e~LsddDW~lRKaA~EaLgsLA~avGe~L~Py~~~~I~~LE~~RfD 298 (896)
++.+|..+--++|-. .+|. .....+..|-....|..--+|..||=+++-|..-.-+.+-|-...+.+-++..-.|
T Consensus 602 N~HVRyGaA~ALGIa-CAGt----G~~eAi~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~pkv~~frk~l~kvI~d 676 (929)
T KOG2062|consen 602 NPHVRYGAAMALGIA-CAGT----GLKEAINLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLCPKVNGFRKQLEKVIND 676 (929)
T ss_pred ChhhhhhHHHHHhhh-hcCC----CcHHHHHHHhhhhcChHHHHHHHHHHHHHHHHHhcccccCchHHHHHHHHHHHhhh
Confidence 778887655566643 2231 12244444444556666779999999999999888888888888888888888889
Q ss_pred CCh
Q 002658 299 KIK 301 (896)
Q Consensus 299 KvK 301 (896)
|.+
T Consensus 677 KhE 679 (929)
T KOG2062|consen 677 KHE 679 (929)
T ss_pred hhh
Confidence 888
No 213
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=87.78 E-value=3.1 Score=38.78 Aligned_cols=73 Identities=21% Similarity=0.251 Sum_probs=59.0
Q ss_pred HHHHHHHcCCChh--HHHHHHHHHHHHHhcCC-C-CCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccchh
Q 002658 44 KILTSLSKLADRD--THQIAIEDLEKTIQTLS-Q-ESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTST 116 (896)
Q Consensus 44 rll~~L~KLsDRD--T~k~Aa~eLD~La~~L~-p-d~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I~P 116 (896)
.+-.++..+.|.. .|..|+..|.+++..-+ + ..++.++..+.....++++++-=.||..|..++..+++.+.|
T Consensus 4 ~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~vl~ 80 (92)
T PF10363_consen 4 TLQEALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDEVLP 80 (92)
T ss_pred HHHHHHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHHHHH
Confidence 3445666776655 89999999999998644 2 238888998899999999999999999999999999876544
No 214
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=87.40 E-value=21 Score=50.79 Aligned_cols=254 Identities=15% Similarity=0.118 Sum_probs=150.4
Q ss_pred CChhHHHHHHHHHHHHHhc----CC-CCC------HHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhccc-chhhHHH
Q 002658 53 ADRDTHQIAIEDLEKTIQT----LS-QES------LPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSEL-TSTHVTK 120 (896)
Q Consensus 53 sDRDT~k~Aa~eLD~La~~----L~-pd~------Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~-I~P~Lpk 120 (896)
.+......+...|..+-.. |+ ++. +..|++-++..-.++.|+.|..++..++.+.+.-... +..+...
T Consensus 996 ~~~~~~~~g~~~l~~i~~~~~~~l~~~~~~~~lpi~~~l~~k~~~lCy~~~wy~k~gG~~gI~~l~~~~~~~~l~d~~~d 1075 (3550)
T KOG0889|consen 996 ENSEMRPAGVRALKVIFSTSTLILGSPERAFKLPMFEYLLEKLCHLCYDSTWYAKDGGVNGIKCLIESMPSLWLLDFQVD 1075 (3550)
T ss_pred cchhhhhhHHHHHHHHHHHHHHhhcCcchhhccchHHHHHHHHHHHhccHhHHHHcCCCceeeeehhhchHHHHHHHHHH
Confidence 4566778888877776643 33 222 3444444444446778999999999999998877733 6778888
Q ss_pred HHHHHHHhhcCCChHHHH----HHHHHHHHHHHHHhcc-cc-cCCchhHhhhHHHHHHHHhcCCHhHHHHHHHHHHHHHH
Q 002658 121 IISHIVKRLKDSDSGMKE----ACRDSIGSLSKLYLNG-KE-ENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVE 194 (896)
Q Consensus 121 IL~~IlrrLkDpDs~VR~----Ac~~aLG~LA~~li~~-~~-e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE 194 (896)
++..+.-.|+|-...+-. .|-+.+-.+...+... .. +........++.++..-|..+|..|-+.+..+|..+-|
T Consensus 1076 ~~~~l~fvl~d~~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~lv~eL~npN~~VR~~~~~~L~~i~~ 1155 (3550)
T KOG0889|consen 1076 ILKALFFVLKDTESEVSSLPLDEAKDILMDILRVIFIDELAEEERAKSAMNVFSPLVLELFNPNSDVREFSQKLLRLISE 1155 (3550)
T ss_pred HhhhHHHhhcCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHH
Confidence 889899999987654433 3333343333333221 11 11124567788888888889999999999999999999
Q ss_pred hcCCCCc----hhHHHH-HHHHHHHhcCCchhhHHHHHHHHHHHHhccccCcccHHHHH---HHHHHhhCCC--------
Q 002658 195 CASDPPV----VAFQKL-CARICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLL---QSIHECLGST-------- 258 (896)
Q Consensus 195 ~a~d~~~----~yL~~L-lPRL~kLLks~s~kaK~alL~aIgSLA~vga~~~pyle~lL---p~L~e~Lsdd-------- 258 (896)
....... ++-+.| .|.+.+.|.+..+.+.-..++++.=.+..+..+-.+.+.+. ..+...+..+
T Consensus 1156 ~s~~~v~~L~~p~K~~ll~p~f~k~lr~~p~~~qig~vd~~~fC~~l~p~~f~~~~~l~~l~~~~~~La~~~~~~~~~i~ 1235 (3550)
T KOG0889|consen 1156 LSGKSVVKLLEPFKDVLLSPIFKKPLRALPFTIQIGHLDAITFCLSLGPCLFDFTEELYRLKRFLIALADAEEDELATIQ 1235 (3550)
T ss_pred HcCCcHHHHHHHHHHHHhccccccccccCCHHHHhhhHHHHHHHHHcCCcccCchHHHHHHHHHHHHhhhhhhhhhhhhh
Confidence 8743322 122222 34444444443444444455555444444422222222222 2222222211
Q ss_pred ----------CHHHHHHHHHHHHHHHHhcc---hHHHhhHHHHHHHHHhhhcCCChhhHHH
Q 002658 259 ----------DWATRKAAADALSALALHSS---NLVIDGATSTLTVLEACRFDKIKPVRDS 306 (896)
Q Consensus 259 ----------DW~lRKaA~EaLgsLA~avG---e~L~Py~~~~I~~LE~~RfDKvKpVRDa 306 (896)
--.+|-++.++|+.-..... ....+|...+|.++-...+-+-+..-++
T Consensus 1236 k~~~~k~~~~l~~Lr~~ci~ll~~~~~~~d~~~~~~~~~r~kii~v~fk~l~~~~~Ei~~~ 1296 (3550)
T KOG0889|consen 1236 KTSDYKNSSSLVRLRVACIKLLAACMKLSDFRTPQHAELREKIIAVFFKSLYKRSSELIEV 1296 (3550)
T ss_pred cccccccccccccchhHHHHHHHHHHhcccccchhhhhhhhHHHHHHHHHHcCChHHHHHH
Confidence 12358888888888776666 4577777888777655555555534444
No 215
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=86.85 E-value=1.2e+02 Score=40.01 Aligned_cols=193 Identities=13% Similarity=0.131 Sum_probs=128.1
Q ss_pred hhHhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhcCC-CCCHHHHHHHHhhhcCC-CChhhHHHHHHHHHHHHHHhc
Q 002658 34 SHLAMVEMKQKILTSLSKLADRDTHQIAIEDLEKTIQTLS-QESLPMLLNCLYESSND-PKPAVKKESVRLLALVCELHS 111 (896)
Q Consensus 34 ~~~~~~~Lk~rll~~L~KLsDRDT~k~Aa~eLD~La~~L~-pd~Lp~fLs~L~es~ss-~k~~vRKeAIllLG~IAeg~~ 111 (896)
.+--+.....+++++|..+. . .....++.+..+...++ ...+..++.-|...... .+...-+.-...|..+++.-+
T Consensus 230 ~~~~~~t~~~rilq~l~~fe-h-l~~~~ad~v~l~~sky~~~sl~~~Iir~I~~~~~~~~d~~g~k~v~~fL~elS~~~P 307 (1251)
T KOG0414|consen 230 RYNQCSTFASRILQNLRYFE-H-LAVHVADAVTLVRSKYGSVSLAGNIIRSIGSPEPNEKDCAGPKIVGNFLVELSERVP 307 (1251)
T ss_pred HhhhhhHHHHHHHHHHHHHH-H-HHHHHHHHHHHHHHhcccHHHHHHHHHHhcccchhcccccchhhHHHHHHHHHHHhH
Confidence 33344556667777777764 2 22334445555555442 22345555555433322 245566677778888888888
Q ss_pred ccchhhHHHHHHHHHHhhcCCCh-HHHHHHHHHHHHHHHHHhcccc-c-CCchhHhhhHHHHHHHHhcCCHhHHHHHHHH
Q 002658 112 ELTSTHVTKIISHIVKRLKDSDS-GMKEACRDSIGSLSKLYLNGKE-E-NNGTVVGLFVKPLFEAMMEQNKGVQSGAAMC 188 (896)
Q Consensus 112 d~I~P~LpkIL~~IlrrLkDpDs-~VR~Ac~~aLG~LA~~li~~~~-e-~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasA 188 (896)
..+.++|..++. |-|..+ .+|.+...++|.++...+.... + ...+.-.+++..|.+.+.+-++.|-.-+..-
T Consensus 308 ~l~~~~l~~lv~-----lld~es~~lRnavlei~~n~V~~~l~d~e~~~~sk~~r~~~le~l~erl~Dvsa~vRskVLqv 382 (1251)
T KOG0414|consen 308 KLMLRQLTLLVD-----LLDSESYTLRNAVLEICANLVASELRDEELEEMSKSLRDELLELLRERLLDVSAYVRSKVLQV 382 (1251)
T ss_pred HHHHHHHHHHHH-----hcCCchHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHH
Confidence 888888877777 556554 7899999999999888876311 1 1223344588888888888999999999999
Q ss_pred HHHHHHhcCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHH
Q 002658 189 MAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLS 234 (896)
Q Consensus 189 LAkIIE~a~d~~~~yL~~LlPRL~kLLks~s~kaK~alL~aIgSLA 234 (896)
+.++|+.- -.+......++.-.+.-|.+.+.-+|-.++..+.++-
T Consensus 383 ~~~l~~~~-s~p~~~~~eV~~la~grl~DkSslVRk~Ai~Ll~~~L 427 (1251)
T KOG0414|consen 383 FRRLFQQH-SIPLGSRTEVLELAIGRLEDKSSLVRKNAIQLLSSLL 427 (1251)
T ss_pred HHHHHHcc-CCCccHHHHHHHHHhcccccccHHHHHHHHHHHHHHH
Confidence 99999852 2233456677777777777777888887787777763
No 216
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=86.43 E-value=5.1 Score=48.22 Aligned_cols=154 Identities=18% Similarity=0.149 Sum_probs=109.6
Q ss_pred HHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHH-HhcCCHhHHHHHHHHHHHHHHhcCCCCch
Q 002658 124 HIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEA-MMEQNKGVQSGAAMCMAKMVECASDPPVV 202 (896)
Q Consensus 124 ~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~ea-L~Eqnk~VQ~gAasALAkIIE~a~d~~~~ 202 (896)
.|...|.|.|+.+|..-+.+++ ++...+ + -..++..|+.. +.+.|..|.-+|..||.-+|=..++
T Consensus 520 ~I~ell~d~ds~lRy~G~fs~a-lAy~GT--g-------n~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~---- 585 (926)
T COG5116 520 YINELLYDKDSILRYNGVFSLA-LAYVGT--G-------NLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRD---- 585 (926)
T ss_pred HHHHHhcCchHHhhhccHHHHH-HHHhcC--C-------cchhHhhhheeecccCchHHHHHHHHheeeeEecCcc----
Confidence 5667789999999988877765 222221 1 12244555554 5788999999999999888753333
Q ss_pred hHHHHHHHHHHHhc-CCchhhHHHHHHHHHHH-HhccccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcchH
Q 002658 203 AFQKLCARICKLLS-NQNFMAKASLLPVVGSL-SQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSSNL 280 (896)
Q Consensus 203 yL~~LlPRL~kLLk-s~s~kaK~alL~aIgSL-A~vga~~~pyle~lLp~L~e~LsddDW~lRKaA~EaLgsLA~avGe~ 280 (896)
++++.+++|. +-++.+|...--++|-. +..| ....+..|-....|..--+|.+||=+++-|..-.-+.
T Consensus 586 ----~lv~tvelLs~shN~hVR~g~AvaLGiacag~G------~~~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~ 655 (926)
T COG5116 586 ----LLVGTVELLSESHNFHVRAGVAVALGIACAGTG------DKVATDILEALMYDTNDFVRQSAMIAVGMILMQCNPE 655 (926)
T ss_pred ----hhhHHHHHhhhccchhhhhhhHHHhhhhhcCCc------cHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcc
Confidence 6677777775 45788887665566643 2222 2233444444456677789999999999999998899
Q ss_pred HHhhHHHHHHHHHhhhcCCCh
Q 002658 281 VIDGATSTLTVLEACRFDKIK 301 (896)
Q Consensus 281 L~Py~~~~I~~LE~~RfDKvK 301 (896)
+-|-..+|++-++..-.||.+
T Consensus 656 Lnp~v~~I~k~f~~vI~~Khe 676 (926)
T COG5116 656 LNPNVKRIIKKFNRVIVDKHE 676 (926)
T ss_pred cChhHHHHHHHHHHHHhhhhH
Confidence 999999999999988889887
No 217
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=86.30 E-value=69 Score=36.83 Aligned_cols=254 Identities=14% Similarity=0.142 Sum_probs=147.2
Q ss_pred CChhHHHHHHHHHHHHHhcCC---C-----CCHHHHHHHHhhhcCC-------CChhhHHHHHHHHHHHHHHhc--ccc-
Q 002658 53 ADRDTHQIAIEDLEKTIQTLS---Q-----ESLPMLLNCLYESSND-------PKPAVKKESVRLLALVCELHS--ELT- 114 (896)
Q Consensus 53 sDRDT~k~Aa~eLD~La~~L~---p-----d~Lp~fLs~L~es~ss-------~k~~vRKeAIllLG~IAeg~~--d~I- 114 (896)
+||+.+-=|...|-.+....+ . +.++.|+.++.....+ .+...-.+|+++||.+..-.. ..+
T Consensus 5 ~~~~~r~daY~~l~~~l~~~~~~~~~~~l~~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~~~i~~~l~ 84 (372)
T PF12231_consen 5 SDRSSRLDAYMTLNNALKAYDNLPDRQALQDKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYHPEIVSTLS 84 (372)
T ss_pred CCcHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHccHHHHhhCC
Confidence 466666666666665554332 1 1266667776654432 356667789999998875221 122
Q ss_pred hhhHHHHHHHHHHhhcCCCh--HHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhc--CCHhHHHHHHHHHH
Q 002658 115 STHVTKIISHIVKRLKDSDS--GMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMME--QNKGVQSGAAMCMA 190 (896)
Q Consensus 115 ~P~LpkIL~~IlrrLkDpDs--~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~E--qnk~VQ~gAasALA 190 (896)
..+...++-+.+..|.++.. .+-..+.++|. .+=+.+.. ........+-..+..+.+ +...+..-+..++.
T Consensus 85 ~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls---~Q~f~~~~--~~~~~~~~l~~~l~~i~~~~~s~si~~erL~i~~ 159 (372)
T PF12231_consen 85 DDFASFIIDHSIESLQNPNSPKSICTHYLWCLS---DQKFSPKI--MTSDRVERLLAALHNIKNRFPSKSIISERLNIYK 159 (372)
T ss_pred hHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH---cCCCCCcc--cchhhHHHHHHHHHHhhccCCchhHHHHHHHHHH
Confidence 34455688889999988763 34444444433 22111110 011122222233333333 57788888999999
Q ss_pred HHHHhcCCCCchh----HHHHHHHHHHHhcCCchhhHHHHHHHHHHHH--------h-ccccC------cccHHHHHHHH
Q 002658 191 KMVECASDPPVVA----FQKLCARICKLLSNQNFMAKASLLPVVGSLS--------Q-VGAIA------PQSLEPLLQSI 251 (896)
Q Consensus 191 kIIE~a~d~~~~y----L~~LlPRL~kLLks~s~kaK~alL~aIgSLA--------~-vga~~------~pyle~lLp~L 251 (896)
++++..+...... ++.|++.++-..+ ..+.++..+....... . +...+ ..|++.+...|
T Consensus 160 ~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k--~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~L 237 (372)
T PF12231_consen 160 RLLSQFPQQMIKHADIWFPILFPDLLSSAK--DIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLENGKLIQLYCERL 237 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcch--HHHHHHHHHHHHHHHHhChhHHHHHHHHHHhccccccccHHHHHHHHH
Confidence 9999887766543 5555555553222 2333322222111111 0 00111 13566677777
Q ss_pred HHhhCC-CCHHHHHHHHHHHHHHHHhcchH-H--HhhHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHhcc
Q 002658 252 HECLGS-TDWATRKAAADALSALALHSSNL-V--IDGATSTLTVLEACRFDKIKPVRDSMNEALQLWKKIAG 319 (896)
Q Consensus 252 ~e~Lsd-dDW~lRKaA~EaLgsLA~avGe~-L--~Py~~~~I~~LE~~RfDKvKpVRDaA~eALe~WK~la~ 319 (896)
.+.+.+ ++ =+.|.++-+.+...+|.. + -+|....+.+.+.|=...+..+|-. |+..|+.+-.
T Consensus 238 ~~mi~~~~~---~~~a~~iW~~~i~LL~~~~~~~w~~~n~wL~v~e~cFn~~d~~~k~~---A~~aW~~liy 303 (372)
T PF12231_consen 238 KEMIKSKDE---YKLAMQIWSVVILLLGSSRLDSWEHLNEWLKVPEKCFNSSDPQVKIQ---AFKAWRRLIY 303 (372)
T ss_pred HHHHhCcCC---cchHHHHHHHHHHHhCCchhhccHhHhHHHHHHHHHhcCCCHHHHHH---HHHHHHHHHH
Confidence 777776 33 245777878777777833 2 3678899999999999999988865 9999999985
No 218
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=86.17 E-value=9.1 Score=46.22 Aligned_cols=114 Identities=13% Similarity=0.217 Sum_probs=79.3
Q ss_pred cCCCChhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhhcC-CChHHHHHHHHHHHHHHHHHhcccccCCchhHhhh
Q 002658 88 SNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKD-SDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLF 166 (896)
Q Consensus 88 ~ss~k~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrLkD-pDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~l 166 (896)
.++-+--||++|+.+||.+|=--.+. ++-++..|.+ .++.||...+-++|..+..- + ...
T Consensus 561 vsD~nDDVrRAAViAlGfvc~~D~~~--------lv~tvelLs~shN~hVR~g~AvaLGiacag~---G--------~~~ 621 (926)
T COG5116 561 VSDGNDDVRRAAVIALGFVCCDDRDL--------LVGTVELLSESHNFHVRAGVAVALGIACAGT---G--------DKV 621 (926)
T ss_pred cccCchHHHHHHHHheeeeEecCcch--------hhHHHHHhhhccchhhhhhhHHHhhhhhcCC---c--------cHH
Confidence 35566789999999999986332222 3345555655 47899999999999766544 2 123
Q ss_pred HHHHHHHH-hcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCch
Q 002658 167 VKPLFEAM-MEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNF 220 (896)
Q Consensus 167 L~pL~eaL-~Eqnk~VQ~gAasALAkIIE~a~d~~~~yL~~LlPRL~kLLks~s~ 220 (896)
.--+++.| -+.+.-|..+||.|++.+.=...+...+-+..+.-+|..++.+.|-
T Consensus 622 a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v~~I~k~f~~vI~~Khe 676 (926)
T COG5116 622 ATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPNVKRIIKKFNRVIVDKHE 676 (926)
T ss_pred HHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChhHHHHHHHHHHHHhhhhH
Confidence 33445555 5778889999999999998766666566666777777777766543
No 219
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=85.80 E-value=6.1 Score=40.20 Aligned_cols=145 Identities=9% Similarity=0.114 Sum_probs=85.0
Q ss_pred HHHHHHHHHhhcCC-ChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhcCCHhHHHHHHHHHHHHHH--h
Q 002658 119 TKIISHIVKRLKDS-DSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVE--C 195 (896)
Q Consensus 119 pkIL~~IlrrLkDp-Ds~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE--~ 195 (896)
|.++..+++-|+-. ...+|..|..++|.|..- +|. ..+-......+.. .+.....+-....- +
T Consensus 9 P~LL~~L~~iLk~e~s~~iR~E~lr~lGilGAL--DP~----------~~k~~~~~~~~~~--~~~~~~~~~~~~l~~~~ 74 (160)
T PF11865_consen 9 PELLDILLNILKTEQSQSIRREALRVLGILGAL--DPY----------KHKSIQKSLDSKS--SENSNDESTDISLPMMG 74 (160)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHhhhcccc--CcH----------HHhcccccCCccc--cccccccchhhHHhhcc
Confidence 66788888887765 479999999999976431 210 0000000000000 01111111111111 1
Q ss_pred cCCCCchh-HHHHHHHHHHHhcCCchhh-HHHHHHHHHHHHh-ccccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 002658 196 ASDPPVVA-FQKLCARICKLLSNQNFMA-KASLLPVVGSLSQ-VGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSA 272 (896)
Q Consensus 196 a~d~~~~y-L~~LlPRL~kLLks~s~ka-K~alL~aIgSLA~-vga~~~pyle~lLp~L~e~LsddDW~lRKaA~EaLgs 272 (896)
......+| ....+..|.++|++++..- ..+++.+|-.++. .|....+|++.++|.++..+...+..+|.....-|+.
T Consensus 75 ~~~~~ee~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~ 154 (160)
T PF11865_consen 75 ISPSSEEYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLAD 154 (160)
T ss_pred CCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 11112244 4457788888998874432 2367777777764 4544599999999999999886555888888888887
Q ss_pred HHHhc
Q 002658 273 LALHS 277 (896)
Q Consensus 273 LA~av 277 (896)
|...+
T Consensus 155 lv~iv 159 (160)
T PF11865_consen 155 LVSIV 159 (160)
T ss_pred HHHHh
Confidence 76654
No 220
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=85.36 E-value=24 Score=38.88 Aligned_cols=147 Identities=16% Similarity=0.156 Sum_probs=103.2
Q ss_pred HHHHhcCCHhHHHHHHHHHHHHHHhcCCC--CchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhccccCcccHHHHH
Q 002658 171 FEAMMEQNKGVQSGAAMCMAKMVECASDP--PVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLL 248 (896)
Q Consensus 171 ~eaL~Eqnk~VQ~gAasALAkIIE~a~d~--~~~yL~~LlPRL~kLLks~s~kaK~alL~aIgSLA~vga~~~pyle~lL 248 (896)
=+.|.+.+..+.+.|..+|+.+++..+.. ...-+..|+.-++.-|.+... +..+ +.++.+++............++
T Consensus 5 g~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D~~~-~~~~-l~gl~~L~~~~~~~~~~~~~i~ 82 (262)
T PF14500_consen 5 GEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDDHAC-VQPA-LKGLLALVKMKNFSPESAVKIL 82 (262)
T ss_pred hhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhccHhh-HHHH-HHHHHHHHhCcCCChhhHHHHH
Confidence 34566778889999999999999997532 234566677777776754322 3444 7888888754444455566777
Q ss_pred HHHHHhhCC--CCHHHHHHHHHHHHHHHHhcchHHHhhHHHHHH-HHHhhhcCCChhhHHHHHHHHHHHHHhccCCC
Q 002658 249 QSIHECLGS--TDWATRKAAADALSALALHSSNLVIDGATSTLT-VLEACRFDKIKPVRDSMNEALQLWKKIAGKVD 322 (896)
Q Consensus 249 p~L~e~Lsd--dDW~lRKaA~EaLgsLA~avGe~L~Py~~~~I~-~LE~~RfDKvKpVRDaA~eALe~WK~la~~~d 322 (896)
..+++.... --...|..+.+.|..+.....+.+...-...+. +++.+...|++ .-...++++++.+...++
T Consensus 83 ~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDP---RnLl~~F~l~~~i~~~~~ 156 (262)
T PF14500_consen 83 RSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDP---RNLLLSFKLLKVILQEFD 156 (262)
T ss_pred HHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCH---HHHHHHHHHHHHHHHhcc
Confidence 777764332 346789999999999999887777655455554 55677778888 667788999998886665
No 221
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=85.28 E-value=1.7e+02 Score=40.53 Aligned_cols=225 Identities=12% Similarity=0.068 Sum_probs=132.1
Q ss_pred CCChhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHH
Q 002658 90 DPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKP 169 (896)
Q Consensus 90 s~k~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~p 169 (896)
+....+|+-.+.++..+...+++.|..=+.-|+..+-....|+...+=..+-+++..+....+.....-....+..++..
T Consensus 1194 s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~c 1273 (1780)
T PLN03076 1194 SNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNC 1273 (1780)
T ss_pred cCchHHHHHHHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHH
Confidence 45678999999999999999999998899999999998899998877777888888777664331100001234444444
Q ss_pred HHHHHh-cCCHhHHHHHHHHHHH----HHHhc-----C------------------CC-----C----chhHHHHHHHHH
Q 002658 170 LFEAMM-EQNKGVQSGAAMCMAK----MVECA-----S------------------DP-----P----VVAFQKLCARIC 212 (896)
Q Consensus 170 L~eaL~-Eqnk~VQ~gAasALAk----IIE~a-----~------------------d~-----~----~~yL~~LlPRL~ 212 (896)
|.+... ..+.++-..|..-|.. +.+.. . .. . ..+-=.|+-.|.
T Consensus 1274 L~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls 1353 (1780)
T PLN03076 1274 LIAFTNSRFNKDISLNAIAFLRFCATKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLS 1353 (1780)
T ss_pred HHHHHhCcCcccccHHHHHHHHHHHHHHHhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHH
Confidence 443332 1122222223332332 22110 0 00 0 012224666676
Q ss_pred HHhcCCchhhHHHHHHHHHHHH-hccccCcc-----cHHHHHHHHHHhhCC------------------------CCHHH
Q 002658 213 KLLSNQNFMAKASLLPVVGSLS-QVGAIAPQ-----SLEPLLQSIHECLGS------------------------TDWAT 262 (896)
Q Consensus 213 kLLks~s~kaK~alL~aIgSLA-~vga~~~p-----yle~lLp~L~e~Lsd------------------------dDW~l 262 (896)
.+..+....+|..+|..+-.+. .-|..|.+ .+..+|.+|++.+.. ..|-
T Consensus 1354 ~l~~D~RlEVR~~ALqtLF~iL~~yG~~Fs~~~W~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl- 1432 (1780)
T PLN03076 1354 ELSFDPRPEIRKSALQVLFDTLRNHGHLFSLPLWERVFESVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWL- 1432 (1780)
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhhhhHH-
Confidence 7777777788888777765554 34555654 345566666665421 1242
Q ss_pred HHHHHHHHHHHHHhcc---hHHHhhHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHhc
Q 002658 263 RKAAADALSALALHSS---NLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQLWKKIA 318 (896)
Q Consensus 263 RKaA~EaLgsLA~avG---e~L~Py~~~~I~~LE~~RfDKvKpVRDaA~eALe~WK~la 318 (896)
.-....+|..|..... +.+.+.++.++..|..|-....+ ..|.-.+...+.+-
T Consensus 1433 ~eT~~~AL~~lvdLft~fFd~L~~~L~~~l~ll~~ci~q~n~---~la~ig~~~l~~li 1488 (1780)
T PLN03076 1433 YETCTLALQLVVDLFVKFYPTVNPLLKKVLMLLVSFIKRPHQ---SLAGIGIAAFVRLM 1488 (1780)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchH---HHHHHHHHHHHHHH
Confidence 2333344444444444 56666788889999999888777 34444444444444
No 222
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5.
Probab=85.26 E-value=1.4 Score=41.19 Aligned_cols=55 Identities=5% Similarity=0.184 Sum_probs=43.2
Q ss_pred hhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHH
Q 002658 94 AVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSK 149 (896)
Q Consensus 94 ~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~ 149 (896)
..|-.+++.|++++..++-.+.++||+|+..+.+...| ...|+.++-.+++.+=+
T Consensus 4 ~~rH~~VLGL~Alv~a~Py~vP~w~P~~l~~La~~~~~-~~~I~~tvk~tl~eFkr 58 (90)
T PF11919_consen 4 RRRHAAVLGLSALVLAFPYDVPPWMPEVLEELARHAND-PQPIRTTVKKTLSEFKR 58 (90)
T ss_dssp HHHHHHHHHHHHHHTT-S--SS-HHHHHHHHHHTTSSS--SSHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHhCC-CchHHHHHHHHHHHHHH
Confidence 35778999999999999999999999999999999998 55788888888876654
No 223
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=85.07 E-value=5.9 Score=43.84 Aligned_cols=63 Identities=19% Similarity=0.449 Sum_probs=48.3
Q ss_pred CCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHH
Q 002658 74 QESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLS 148 (896)
Q Consensus 74 pd~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA 148 (896)
|..++.+...|.+. ...+.||-+|..+||.++. +.-+..|.+-++|+++.||.-|.-++-.+-
T Consensus 217 ~~ai~~L~k~L~d~--~E~pMVRhEaAeALGaIa~----------e~~~~vL~e~~~D~~~vv~esc~valdm~e 279 (289)
T KOG0567|consen 217 PAAIPSLIKVLLDE--TEHPMVRHEAAEALGAIAD----------EDCVEVLKEYLGDEERVVRESCEVALDMLE 279 (289)
T ss_pred hhhhHHHHHHHHhh--hcchHHHHHHHHHHHhhcC----------HHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 43465555555543 3568999999999999987 566788889999999999999988776543
No 224
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=84.93 E-value=28 Score=43.35 Aligned_cols=261 Identities=12% Similarity=0.095 Sum_probs=138.4
Q ss_pred hHHHHHHHHHHHHHcC-CChhHHHHHHHHHHHHHhcCCCCCHHHHHH-HHhhhcCCCChhhHHHHHHHHHHHHHHhcccc
Q 002658 37 AMVEMKQKILTSLSKL-ADRDTHQIAIEDLEKTIQTLSQESLPMLLN-CLYESSNDPKPAVKKESVRLLALVCELHSELT 114 (896)
Q Consensus 37 ~~~~Lk~rll~~L~KL-sDRDT~k~Aa~eLD~La~~L~pd~Lp~fLs-~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I 114 (896)
.-.++-.++-.||..+ +..+-.+.++.+++-++. .|..++. ++....-+ ...=+.|+..|=++.---..-+
T Consensus 386 ~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLId-----aL~~~iq~~i~~~~~d--~K~VENcvCilRNLSYrl~~Ev 458 (717)
T KOG1048|consen 386 EDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLID-----ALLFSIQTAIQKSDLD--SKSVENCVCILRNLSYRLEAEV 458 (717)
T ss_pred ccceeeehhhhhhccccchhHHHHHHHhhccchHH-----HHHHHHHHHHHhcccc--chhHHHHHHHHhhcCchhhhhc
Confidence 3344555667788777 445555666666665554 1333333 33322222 2333567777766544333224
Q ss_pred hhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhc----------cccc----CCc-hhHhhhHHHHHHHHh-cCC
Q 002658 115 STHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLN----------GKEE----NNG-TVVGLFVKPLFEAMM-EQN 178 (896)
Q Consensus 115 ~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~----------~~~e----~~~-~~~~~lL~pL~eaL~-Eqn 178 (896)
.+-..+.+..+-+...-..+. +.+|.+....-+ +... +.+ -.++.++++-+..|. ..|
T Consensus 459 p~~~~~~~~~~~~~~~~~~~~------~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n 532 (717)
T KOG1048|consen 459 PPKYRQVLANIARLPGVGPPA------ESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKN 532 (717)
T ss_pred CHhhhhHhhcccccccCCCcc------cccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcc
Confidence 443333333332222111111 344433333211 1000 001 235677777677774 568
Q ss_pred HhHHHHHHHHHHHHHHhcCCCCchhH-------HHHHHHHHHHhcCCchhhHHHHHHHHHHHHh-ccccCcccHHHHHHH
Q 002658 179 KGVQSGAAMCMAKMVECASDPPVVAF-------QKLCARICKLLSNQNFMAKASLLPVVGSLSQ-VGAIAPQSLEPLLQS 250 (896)
Q Consensus 179 k~VQ~gAasALAkIIE~a~d~~~~yL-------~~LlPRL~kLLks~s~kaK~alL~aIgSLA~-vga~~~pyle~lLp~ 250 (896)
..++++++.||..+.-+... ...|+ ++-+|-|+++|.+++..+..++..+++=++. +- .-.-.....||-
T Consensus 533 ~~TlEasaGaLQNltA~~~~-~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~r-nk~ligk~a~~~ 610 (717)
T KOG1048|consen 533 DNTLEASAGALQNLTAGLWT-WSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIR-NKELIGKYAIPD 610 (717)
T ss_pred hHHHHHhhhhHhhhhccCCc-chhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCch-hhhhhhcchHHH
Confidence 89999999999999876422 22332 2467899999999887766666666666541 11 001111456777
Q ss_pred HHHhhCC------CCHHHHHHHHHHHHHHHHhcchHHHhh-----HHHHHHHHHhhhcCCChhhHHHHHHHHHHH
Q 002658 251 IHECLGS------TDWATRKAAADALSALALHSSNLVIDG-----ATSTLTVLEACRFDKIKPVRDSMNEALQLW 314 (896)
Q Consensus 251 L~e~Lsd------dDW~lRKaA~EaLgsLA~avGe~L~Py-----~~~~I~~LE~~RfDKvKpVRDaA~eALe~W 314 (896)
|.++|.+ .+|++=.++|-+|..|...-.+.-..+ ++.++.+... ++..|.++-+..-.-.+|
T Consensus 611 lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~~nAkdl~~~~g~~kL~~I~~s--~~S~k~~kaAs~vL~~lW 683 (717)
T KOG1048|consen 611 LVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKNVLNAKDLLEIKGIPKLRLISKS--QHSPKEFKAASSVLDVLW 683 (717)
T ss_pred HHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHhHHHHHHHHhccChHHHHHHhcc--cCCHHHHHHHHHHHHHHH
Confidence 8888765 358888888888877764443222222 2233333323 777787775544444444
No 225
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=84.76 E-value=20 Score=43.97 Aligned_cols=152 Identities=15% Similarity=0.118 Sum_probs=105.0
Q ss_pred hHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHh--cccccCCchhHhhhHHHHHHHHhcCCHhHHHHHHHHHHHHHH
Q 002658 117 HVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYL--NGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVE 194 (896)
Q Consensus 117 ~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li--~~~~e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE 194 (896)
+-.....+.+..++| ..++.|+|.++-.+++-+- +-++ .-..+..||+..|.++.-.|+.++..||..+|=
T Consensus 376 ~~t~~~l~~~~~~kd--~~~~aaa~l~~~s~srsV~aL~tg~-----~~~dv~~plvqll~dp~~~i~~~~lgai~NlVm 448 (678)
T KOG1293|consen 376 TTTESHLMCLPPIKD--HDFVAAALLCLKSFSRSVSALRTGL-----KRNDVAQPLVQLLMDPEIMIMGITLGAICNLVM 448 (678)
T ss_pred HHHHHHHcccccccc--HHHHHHHHHHHHHHHHHHHHHHcCC-----ccchhHHHHHHHhhCcchhHHHHHHHHHHHHHh
Confidence 333344444455544 4588888887766665542 2222 134577888888899999999999999999885
Q ss_pred hcCCCCchhHH-HHHHHHHHHhcCCchhhHHHHHHHHHHHH-hcc--ccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 002658 195 CASDPPVVAFQ-KLCARICKLLSNQNFMAKASLLPVVGSLS-QVG--AIAPQSLEPLLQSIHECLGSTDWATRKAAADAL 270 (896)
Q Consensus 195 ~a~d~~~~yL~-~LlPRL~kLLks~s~kaK~alL~aIgSLA-~vg--a~~~pyle~lLp~L~e~LsddDW~lRKaA~EaL 270 (896)
.-.+.-.-+|. ..+.++..++.++.+-.|...+-++.-+. ..- ..+.++-+..+..|..+..|+||.+-..+.+.|
T Consensus 449 efs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqll 528 (678)
T KOG1293|consen 449 EFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLL 528 (678)
T ss_pred hcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHH
Confidence 43332223343 36788889999998888888888887764 221 346777788888899999999999987777766
Q ss_pred HHHHH
Q 002658 271 SALAL 275 (896)
Q Consensus 271 gsLA~ 275 (896)
-.+..
T Consensus 529 RNl~c 533 (678)
T KOG1293|consen 529 RNLTC 533 (678)
T ss_pred HHhhc
Confidence 65543
No 226
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=84.74 E-value=59 Score=40.18 Aligned_cols=146 Identities=15% Similarity=0.108 Sum_probs=91.0
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHHHHhcC-----CCCC---HHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccch
Q 002658 44 KILTSLSKLADRDTHQIAIEDLEKTIQTL-----SQES---LPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTS 115 (896)
Q Consensus 44 rll~~L~KLsDRDT~k~Aa~eLD~La~~L-----~pd~---Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I~ 115 (896)
.++.++.-+.|-|-.+.|+..|..+.... +++. ..++++.+ .++...+...++-++-+++=-+++.=.
T Consensus 380 ~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll----~dp~~~i~~~~lgai~NlVmefs~~ks 455 (678)
T KOG1293|consen 380 SHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLL----MDPEIMIMGITLGAICNLVMEFSNLKS 455 (678)
T ss_pred HHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHh----hCcchhHHHHHHHHHHHHHhhcccHHH
Confidence 34445566688888888888777666542 1222 55555555 245556655554444444443443322
Q ss_pred hhHH-HHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHH-hcCCHhHHHHHHHHHHHHH
Q 002658 116 THVT-KIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAM-MEQNKGVQSGAAMCMAKMV 193 (896)
Q Consensus 116 P~Lp-kIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL-~Eqnk~VQ~gAasALAkII 193 (896)
.+|. -.+-.|+.-+.|+++.+|..+.|++..++-.. ++.. .......+-..++..+ .++.+.||++++.-|-.++
T Consensus 456 kfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~-de~~--k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~ 532 (678)
T KOG1293|consen 456 KFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNC-DEEE--KFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLT 532 (678)
T ss_pred HHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcc-hHHH--HHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhh
Confidence 3332 24567888899999999999999999888666 3211 1122333333444444 7889999999999888887
Q ss_pred Hhc
Q 002658 194 ECA 196 (896)
Q Consensus 194 E~a 196 (896)
-+.
T Consensus 533 c~~ 535 (678)
T KOG1293|consen 533 CNS 535 (678)
T ss_pred cCc
Confidence 654
No 227
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=84.57 E-value=37 Score=35.21 Aligned_cols=71 Identities=10% Similarity=0.199 Sum_probs=55.7
Q ss_pred HHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHH
Q 002658 77 LPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLY 151 (896)
Q Consensus 77 Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~l 151 (896)
+..||..|.+..-+.+..+|..|+.+++.+.+. ..+-| ...+|+|+-...||++.||+.|...+..+.+..
T Consensus 6 ~Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~q--GLvnP--~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~ 76 (187)
T PF12830_consen 6 VQRYLKNILELCLSSDDSVRLAALQVLELILRQ--GLVNP--KQCVPTLIALETSPNPSIRSRAYQLLKELHEKH 76 (187)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhc--CCCCh--HHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHh
Confidence 456777777776788899999999999998873 33344 345788888999999999999988888777766
No 228
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=84.57 E-value=13 Score=45.60 Aligned_cols=117 Identities=18% Similarity=0.188 Sum_probs=90.9
Q ss_pred chhhHHHHHH-HHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhcCCHhHHHHHHHHHHHH
Q 002658 114 TSTHVTKIIS-HIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKM 192 (896)
Q Consensus 114 I~P~LpkIL~-~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasALAkI 192 (896)
+...+..++. +..++-+|....|-+-...++|++-+.+..+ -..+..+++-||+.|+|....||.-||-.+-++
T Consensus 523 ~VnviKdLL~LcemKrgKdnKAVvASnIMyvvGQYpRFLkah-----w~FLkTVv~KLFEFMhE~HEGvqDMACDtFiKI 597 (1053)
T COG5101 523 FVNVIKDLLALCEMKRGKDNKAVVASNIMYVVGQYPRFLKAH-----WSFLKTVVKKLFEFMHEDHEGVQDMACDTFIKI 597 (1053)
T ss_pred HHHHHHHHHHHHHHhhcCCcchhhecceeeeeccchHHHHHH-----HHHHHHHHHHHHHHHhhhhhhHHhhhHHHHHHH
Confidence 3444444444 4467899999999888889999999999432 245677889999999999999999999999999
Q ss_pred HHhcC-------CCC-chhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHh
Q 002658 193 VECAS-------DPP-VVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQ 235 (896)
Q Consensus 193 IE~a~-------d~~-~~yL~~LlPRL~kLLks~s~kaK~alL~aIgSLA~ 235 (896)
++-++ ... .+++..++..|-+...+-.++-+-..+.|.|-++.
T Consensus 598 vqKC~~hFv~Qq~gesEpFI~~Iirnl~ktT~dL~pqQ~htfYeAcg~vIs 648 (1053)
T COG5101 598 VQKCPVHFVTQQEGESEPFIVYIIRNLPKTTGDLEPQQKHTFYEACGMVIS 648 (1053)
T ss_pred HHhCcHHHhhcCCCCCCcHHHHHHHhhhhhcccCChHHHhHHHHHHhHHHh
Confidence 99872 112 46788888888888787777767778888888764
No 229
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=84.31 E-value=1.5 Score=34.16 Aligned_cols=29 Identities=28% Similarity=0.394 Sum_probs=26.4
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHHHH
Q 002658 121 IISHIVKRLKDSDSGMKEACRDSIGSLSK 149 (896)
Q Consensus 121 IL~~IlrrLkDpDs~VR~Ac~~aLG~LA~ 149 (896)
.+|.+++.|+++++.|+..|+|+|+.|++
T Consensus 13 ~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 13 GIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp HHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 57889999999999999999999999873
No 230
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.05 E-value=47 Score=41.64 Aligned_cols=176 Identities=14% Similarity=0.166 Sum_probs=118.6
Q ss_pred hHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhc-ccch
Q 002658 37 AMVEMKQKILTSLSKLADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHS-ELTS 115 (896)
Q Consensus 37 ~~~~Lk~rll~~L~KLsDRDT~k~Aa~eLD~La~~L~pd~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~-d~I~ 115 (896)
++-.--..++.++-|.+|....-+.+..|-.+.. .....|..|.--++..+++++-.+|+-++-+.=-+++.|. +.+.
T Consensus 276 alk~Aa~~~i~l~~kesdnnvklIvldrl~~l~~-~~~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrNvediv 354 (948)
T KOG1058|consen 276 ALKAAASTYIDLLVKESDNNVKLIVLDRLSELKA-LHEKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRNVEDIV 354 (948)
T ss_pred HHHHHHHHHHHHHHhccCcchhhhhHHHHHHHhh-hhHHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhccHHHHH
Confidence 3344456788888999999888888777777663 1222355555455555678888899998877666776665 4455
Q ss_pred hhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHh
Q 002658 116 THVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVEC 195 (896)
Q Consensus 116 P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~ 195 (896)
.+|.+=+---...=.|..-.-|+.-..+|...+-.+. ++-..+++-|++.|++.|+..-.+...=+-.++|-
T Consensus 355 ~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp--------~~aatvV~~ll~fisD~N~~aas~vl~FvrE~iek 426 (948)
T KOG1058|consen 355 QFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFP--------EVAATVVSLLLDFISDSNEAAASDVLMFVREAIEK 426 (948)
T ss_pred HHHHHHHHhccccccccchHHHHHHHHHHHHHhhcCh--------HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHh
Confidence 5554443333333234445779999999988887771 45678999999999999988777776667777776
Q ss_pred cCCCCchhHHHHHHHHHHHhcCCchh
Q 002658 196 ASDPPVVAFQKLCARICKLLSNQNFM 221 (896)
Q Consensus 196 a~d~~~~yL~~LlPRL~kLLks~s~k 221 (896)
.+++-...+.+|+.-|-++=....|.
T Consensus 427 ~p~Lr~~ii~~l~~~~~~irS~ki~r 452 (948)
T KOG1058|consen 427 FPNLRASIIEKLLETFPQIRSSKICR 452 (948)
T ss_pred CchHHHHHHHHHHHhhhhhcccccch
Confidence 66655556777766665554444443
No 231
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.95 E-value=98 Score=39.93 Aligned_cols=213 Identities=12% Similarity=0.136 Sum_probs=118.4
Q ss_pred HHHHHHHHHHHhcccchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhccccc-CCchhHhhhHHHHHHHHh--
Q 002658 99 SVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEE-NNGTVVGLFVKPLFEAMM-- 175 (896)
Q Consensus 99 AIllLG~IAeg~~d~I~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e-~~~~~~~~lL~pL~eaL~-- 175 (896)
.+..+|.+++.-|+...++|--.+=.++..+.++.+.|++++..++-+++..+--...+ -..+..+-++.-|-..|.
T Consensus 568 ~ld~I~~~a~~~g~~F~~~L~~~ly~vl~k~a~~s~~is~vA~sc~~~I~~a~~y~s~~~lI~en~DYlv~sla~~L~~~ 647 (1014)
T KOG4524|consen 568 VLDSIGTIAAVMGEEFQPELMDYLYPVLEKLASPSEAISQVAQSCALRIADALNYGSPPHLIRENVDYLVNSLALRLNTS 647 (1014)
T ss_pred hhhhhHHHHHHhHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHcCCCChHHHHHhhhHHHHHHHHHHhccC
Confidence 45567888888887777766555556777899999999999999999999887210000 000111112222222221
Q ss_pred cCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHH---h-----------------
Q 002658 176 EQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLS---Q----------------- 235 (896)
Q Consensus 176 Eqnk~VQ~gAasALAkIIE~a~d~~~~yL~~LlPRL~kLLks~s~kaK~alL~aIgSLA---~----------------- 235 (896)
.-.+. +---|.-++..+.....++|+.++.-+++.+..-|-..-...+..+-+++ +
T Consensus 648 ~~s~~----~~~Vl~vVl~~s~~~~i~~l~dvvq~i~~~lD~yH~~~~~~~~~ll~s~ik~~~~~~~~~~il~~~~d~~~ 723 (1014)
T KOG4524|consen 648 GMSPR----VPDVLMVVLQYSDYGTIPNLKDVVQTIFKLLDYYHGYSCLQFFQLLHSIIKEMKKKYINDEILGHIADQHI 723 (1014)
T ss_pred CCCch----hHHHHHHHhhcCCCCchhhHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhccccchhhHHHHHHHH
Confidence 01111 22234555666655566777777776666665422211111111111110 0
Q ss_pred -------------------------------------c-c------------------c----------cCcccHHHHHH
Q 002658 236 -------------------------------------V-G------------------A----------IAPQSLEPLLQ 249 (896)
Q Consensus 236 -------------------------------------v-g------------------a----------~~~pyle~lLp 249 (896)
+ | . ..++..+.++.
T Consensus 724 ~~~~k~l~e~p~~~~e~~n~~~d~~~~l~~~~~e~~~~~~~~~~~dnee~~e~~~e~edens~~~d~ep~~~~qv~iv~k 803 (1014)
T KOG4524|consen 724 SQSTKVLNELPTQVKELINDENDLKDDLEPSNFEKDFASKLREPDDNEEPEEREEEVEDENSEYTDTEPILPDQVKIVLK 803 (1014)
T ss_pred HHHHHHhhcchhhHHHhhhhHHHHHHhhhhHHHHHHhhhhccCCCcccCcCCCCCCccccccCCCCCCCCCChHHHHHHH
Confidence 0 0 0 00022222333
Q ss_pred HH---HHhhCCCCHHHHHHHHHHHHHHH---HhcchHHHhhHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHhc
Q 002658 250 SI---HECLGSTDWATRKAAADALSALA---LHSSNLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQLWKKIA 318 (896)
Q Consensus 250 ~L---~e~LsddDW~lRKaA~EaLgsLA---~avGe~L~Py~~~~I~~LE~~RfDKvKpVRDaA~eALe~WK~la 318 (896)
.| ..+|++++..+|-.|+++|.... ....+.|.|.+.+.=..+-.|..+|++ =++++|++..-.++
T Consensus 804 Il~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~~---L~v~~a~~~i~~m~ 875 (1014)
T KOG4524|consen 804 ILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKDP---LIVQRAFSCIEQMG 875 (1014)
T ss_pred HHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCch---HHHHHHHHHHHHHH
Confidence 33 34588899999999999988633 333477888877776766677778888 45555666655555
No 232
>PF05327 RRN3: RNA polymerase I specific transcription initiation factor RRN3; InterPro: IPR007991 This family consists of several eukaryotic proteins which are homologous to the Saccharomyces cerevisiae RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in the S. cerevisiae [] RNA polymerase I complex within the nucleolus. In mammalian cells, the phosphorylation state of Rrn3 regulates rDNA transcription by determining the steady-state concentration of the Rrn3 [].; PDB: 3TJ1_B.
Probab=82.63 E-value=31 Score=41.90 Aligned_cols=144 Identities=12% Similarity=0.184 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcC-CCChhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhhcCCChHH
Q 002658 58 HQIAIEDLEKTIQTLSQESLPMLLNCLYESSN-DPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGM 136 (896)
Q Consensus 58 ~k~Aa~eLD~La~~L~pd~Lp~fLs~L~es~s-s~k~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrLkDpDs~V 136 (896)
...-+.+|-..+..|+.+ ...++..|+...- ..++.++++.+..|++++..++. |++.++..+++.+..+....
T Consensus 53 l~~~L~~L~~~Vs~Ld~~-~~~LV~ail~~~W~~~~~~~v~~y~~Fl~~Lvsa~~~----yl~~vl~~LV~~f~p~~~~~ 127 (563)
T PF05327_consen 53 LIRWLKALSSCVSLLDSS-CKQLVEAILSLNWLGRDEDFVEAYIQFLINLVSAQPK----YLSPVLSMLVKNFIPPPSSI 127 (563)
T ss_dssp HHHHHHHHHHGGGGG-SC-CHHHHHHHHT-TGGGS-HHHHHHHHHHHHHHHHH-GG----GHHHHHHHHHHGGGS-HHHH
T ss_pred HHHHHHHHHHHHHHhhhH-HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHhhHH----HHHHHHHHHHHhccCCCccc
Confidence 444455666666667665 7778888875432 34456777788888888887765 45556666666666655432
Q ss_pred --------------HHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHH--hcCCHhHHHHHHHHHHHHHHhcCCCC
Q 002658 137 --------------KEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAM--MEQNKGVQSGAAMCMAKMVECASDPP 200 (896)
Q Consensus 137 --------------R~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL--~Eqnk~VQ~gAasALAkIIE~a~d~~ 200 (896)
.+.+-.+|..|.+.+ + .....+++.|...+ ......++.+=...|-++++.++..-
T Consensus 128 ~~~~~~~~~~~~~~~~~vH~~L~~Il~lv---P-----~s~~~L~~~l~~~FP~~~~~~~~~~~Yv~NlL~l~~Y~P~L~ 199 (563)
T PF05327_consen 128 AEWPGCPPEKRREIYERVHDALQKILRLV---P-----TSPSFLIPILVQNFPHKRKSKDEHVNYVRNLLRLTEYCPELR 199 (563)
T ss_dssp HH---------------HHHHHHHHHHH----G-----GGHHHHHHHHHHTS--TTS-HHHHHHHHHHHHHHHCC-GGGH
T ss_pred cccchhhhhhhhhhHHHHHHHHHHHHHHc---C-----CCHHHHHHHHHHcCcCCCCChHHHHHHHHHHHHHHcchHHHH
Confidence 223455566555555 1 11233333333333 23466778887888888888776655
Q ss_pred chhHHHHHHHHHHH
Q 002658 201 VVAFQKLCARICKL 214 (896)
Q Consensus 201 ~~yL~~LlPRL~kL 214 (896)
...|.-++.||+++
T Consensus 200 ~~Il~lIi~rLi~i 213 (563)
T PF05327_consen 200 SDILSLIIERLIKI 213 (563)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 56788888888876
No 233
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=82.08 E-value=13 Score=35.21 Aligned_cols=75 Identities=17% Similarity=0.170 Sum_probs=58.8
Q ss_pred cccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcchHHHhhHHHHHHHHHhhhc--------CCChhhHHHHHHHHH
Q 002658 241 PQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSSNLVIDGATSTLTVLEACRF--------DKIKPVRDSMNEALQ 312 (896)
Q Consensus 241 ~pyle~lLp~L~e~LsddDW~lRKaA~EaLgsLA~avGe~L~Py~~~~I~~LE~~Rf--------DKvKpVRDaA~eALe 312 (896)
..+...++..|...|.+.+|.+---|+..|-++....|+.|..++..-.-..+-++| |....||+-+.+.++
T Consensus 32 ~~~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~ 111 (115)
T cd00197 32 NVGPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQ 111 (115)
T ss_pred CccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHH
Confidence 456778899999999999999999999999999999998888776443322232222 335679999999999
Q ss_pred HHH
Q 002658 313 LWK 315 (896)
Q Consensus 313 ~WK 315 (896)
.|.
T Consensus 112 ~w~ 114 (115)
T cd00197 112 LWA 114 (115)
T ss_pred HHh
Confidence 996
No 234
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=81.86 E-value=32 Score=44.13 Aligned_cols=147 Identities=14% Similarity=0.219 Sum_probs=112.1
Q ss_pred hhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhhcCCC-hHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHH
Q 002658 93 PAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSD-SGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLF 171 (896)
Q Consensus 93 ~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrLkDpD-s~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~ 171 (896)
+.+|..++.-||.+|-.|++...- .||.+++-|.-.+ ..||+-..-+++-|+.+++ ....-++|.+.
T Consensus 945 ~~vra~~vvTlakmcLah~~LaKr----~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YT--------am~d~YiP~I~ 1012 (1529)
T KOG0413|consen 945 DKVRAVGVVTLAKMCLAHDRLAKR----LMPMLVKELEYNTAHAIRNNIVLAMGDICSSYT--------AMTDRYIPMIA 1012 (1529)
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHH----HHHHHHHHHHhhhHHHHhcceeeeehhhHHHHH--------HHHHHhhHHHH
Confidence 568889999999999988776543 5677778887665 5889999999999998884 33667888999
Q ss_pred HHHhcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcc--ccCcccHHHHHH
Q 002658 172 EAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVG--AIAPQSLEPLLQ 249 (896)
Q Consensus 172 eaL~Eqnk~VQ~gAasALAkIIE~a~d~~~~yL~~LlPRL~kLLks~s~kaK~alL~aIgSLA~vg--a~~~pyle~lLp 249 (896)
..|-++.+-|...++.-|+.+++.. +..+-+.|+-|++-.|=+.+.+++.-+==+|+.+.... ..|+.+|-.+|-
T Consensus 1013 ~~L~Dp~~iVRrqt~ilL~rLLq~~---~vKw~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~~~~P~~f~~~FVe~i~ 1089 (1529)
T KOG0413|consen 1013 ASLCDPSVIVRRQTIILLARLLQFG---IVKWNGELFIRFMLALLDANEDIRNDAKFYISEVLQSEEPNFFPLNFVEYII 1089 (1529)
T ss_pred HHhcCchHHHHHHHHHHHHHHHhhh---hhhcchhhHHHHHHHHcccCHHHHHHHHHHHHHHHhhcCccchHHHHHHHHH
Confidence 9999999999999999999999842 22334457777777776678888887777889987665 345666666666
Q ss_pred HHHHh
Q 002658 250 SIHEC 254 (896)
Q Consensus 250 ~L~e~ 254 (896)
.|-++
T Consensus 1090 ~ln~~ 1094 (1529)
T KOG0413|consen 1090 ALNQA 1094 (1529)
T ss_pred HHHHH
Confidence 66554
No 235
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=80.81 E-value=12 Score=38.83 Aligned_cols=95 Identities=15% Similarity=0.198 Sum_probs=67.7
Q ss_pred hHHHHHHHHHHHHHhcCCCC-CHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhh----c
Q 002658 56 DTHQIAIEDLEKTIQTLSQE-SLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRL----K 130 (896)
Q Consensus 56 DT~k~Aa~eLD~La~~L~pd-~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrL----k 130 (896)
+.|+.|++.|..+....... .+..|+.++..-+.+ ...+|--|.+.|..++..++..+.++|..++..+-..| +
T Consensus 42 elRK~ayE~lytlLd~~~~~~~~~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~~~L~~k~k 120 (169)
T PF08623_consen 42 ELRKAAYECLYTLLDTCLSRIDISEFLDRVEAGLKD-EHDIKMLCHLMLSKLAQLAPEEVLQRLDSLVEPLRKTLSKKLK 120 (169)
T ss_dssp HHHHHHHHHHHHHHHSTCSSS-HHHHHHHHHHTTSS--HHHHHHHHHHHHHHHHS-HHHHHHCCTTTHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhhccCC
Confidence 48999999999999865433 388899999888877 89999999999999999999988887777777666665 5
Q ss_pred CCC--------hHHHHHHHHHHHHHHHHH
Q 002658 131 DSD--------SGMKEACRDSIGSLSKLY 151 (896)
Q Consensus 131 DpD--------s~VR~Ac~~aLG~LA~~l 151 (896)
+.. .....++..++..|...+
T Consensus 121 ~~AvkQE~Ek~~E~~rs~lr~~~~l~~~i 149 (169)
T PF08623_consen 121 ENAVKQEIEKQQELIRSVLRAVKALNSKI 149 (169)
T ss_dssp TTS-HHHHHHHHHHHHHHHHHHHHH-HSS
T ss_pred CCcccccHHHHHHHHHHHHHHHHHHHHhC
Confidence 543 122334444555554444
No 236
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.63 E-value=13 Score=40.09 Aligned_cols=111 Identities=17% Similarity=0.219 Sum_probs=77.6
Q ss_pred HHHHHHHHHhcCC----chhhHHHHHHHHHHHHhccccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhc---c
Q 002658 206 KLCARICKLLSNQ----NFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHS---S 278 (896)
Q Consensus 206 ~LlPRL~kLLks~----s~kaK~alL~aIgSLA~vga~~~pyle~lLp~L~e~LsddDW~lRKaA~EaLgsLA~av---G 278 (896)
.++|.|+.-|..- .|-++..+.++|-. .|....|.+..++..|...|...|.++-+.++.+|..|.... |
T Consensus 114 ~yLp~F~dGL~e~~hpyrf~A~~Gi~DLLl~---~g~kilpVLPqLI~plK~al~trd~ev~~~~Lkvlq~lv~~~~~vG 190 (262)
T KOG3961|consen 114 PYLPLFFDGLAETDHPYRFVARQGITDLLLA---GGEKILPVLPQLILPLKAALVTRDDEVICRTLKVLQQLVVSVGCVG 190 (262)
T ss_pred HHHHHHhhhhhhcCCCcchhhhhcHHHHHHh---cccccccccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhccccc
Confidence 3455555544332 33355554444432 336778899999999999999999999999888887766654 5
Q ss_pred hHHHhhHHHHHHHHHhh-----------hcCCChhhHHHHHHHHHHHHHhcc
Q 002658 279 NLVIDGATSTLTVLEAC-----------RFDKIKPVRDSMNEALQLWKKIAG 319 (896)
Q Consensus 279 e~L~Py~~~~I~~LE~~-----------RfDKvKpVRDaA~eALe~WK~la~ 319 (896)
..|.||..+++.++... .+||..-+=|...+.|+.+..-.|
T Consensus 191 ~aLVPfYRQlLp~~n~~k~~n~n~gd~idydk~~~igdlI~dTL~~LE~~GG 242 (262)
T KOG3961|consen 191 AALVPFYRQLLPVLNTFKNSNVNRGDGIDYDKNRNIGDLINDTLKHLERSGG 242 (262)
T ss_pred hhhhhHHHHhhhhhhhhcccccccccccCccccccHHHHHHHHHHHHHHcCC
Confidence 99999999998877532 234555566888888888765443
No 237
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=80.47 E-value=52 Score=34.51 Aligned_cols=92 Identities=15% Similarity=0.281 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHcCC--Chh--HHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHH-HHhccc
Q 002658 39 VEMKQKILTSLSKLA--DRD--THQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVC-ELHSEL 113 (896)
Q Consensus 39 ~~Lk~rll~~L~KLs--DRD--T~k~Aa~eLD~La~~L~pd~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IA-eg~~d~ 113 (896)
-++|.-|+.||+.-+ +-+ .-+..+..+-.=+-.++.+..+-+..||.... ..++ ..|+..|--+. ...+++
T Consensus 2 ~eikplLIsCL~~q~~k~s~~KiL~~iVs~Va~~v~~~~~~~W~eL~d~Ils~~-~~e~---~kA~~IF~~L~~~l~~ef 77 (174)
T PF04510_consen 2 REIKPLLISCLTMQETKESDFKILRRIVSHVAYEVFDLQEGGWDELSDCILSLS-ENEP---VKAFHIFICLPMPLYGEF 77 (174)
T ss_pred cchHHHHHHHHHhhcccHhHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHhh-ccch---HHHHHHHHhCCchhhhhH
Confidence 468889999997663 222 11122221111111234445778888888543 2222 45777787777 668899
Q ss_pred chhhHHHHHHHHHHhhcCCCh
Q 002658 114 TSTHVTKIISHIVKRLKDSDS 134 (896)
Q Consensus 114 I~P~LpkIL~~IlrrLkDpDs 134 (896)
+.|+|..+++.+.++|.+|..
T Consensus 78 l~~~~~~L~~~~~~~L~~p~~ 98 (174)
T PF04510_consen 78 LIPFMENLLPEISKVLLPPEE 98 (174)
T ss_pred HHHHHHHHHHHHHHHcCCchh
Confidence 999999999999999999964
No 238
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=80.43 E-value=1.2e+02 Score=34.93 Aligned_cols=253 Identities=17% Similarity=0.259 Sum_probs=141.8
Q ss_pred HHHHHHHHHHHHHcC--CChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccch
Q 002658 38 MVEMKQKILTSLSKL--ADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTS 115 (896)
Q Consensus 38 ~~~Lk~rll~~L~KL--sDRDT~k~Aa~eLD~La~~L~pd~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I~ 115 (896)
..++.+.+..+|.++ ...+..+-+.+++.+... .+-..|+... +..|. .+.+..+...+..
T Consensus 12 P~ElVr~l~e~L~~L~~~~~~~~~k~~eeisK~L~--------~mK~IL~G~~-e~ep~-~e~v~qLa~Ei~~------- 74 (335)
T PF08569_consen 12 PAELVRSLREALEKLDSKSDKKREKAQEEISKYLQ--------QMKEILYGDG-EPEPN-PEQVAQLAQEIYR------- 74 (335)
T ss_dssp HHHHHHHHHHHHHHHHSS-HHHHHHHHHHHHHHHH--------HHHHHHHS-S-S-----HHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHHhccccCcchhhHHHHHHHHHH--------HHHHHhcCCC-CCCCC-HHHHHHHHHHHHH-------
Confidence 346666677777777 234466666666665443 2233344322 22222 2222222211111
Q ss_pred hhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccc-c---CCchhHhhhHHHHHHHHhcCCHhHHHHHHHHHHH
Q 002658 116 THVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKE-E---NNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAK 191 (896)
Q Consensus 116 P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~-e---~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasALAk 191 (896)
..++..++..|..=+-..|.-++...+.+.++-..... . ....++++++..|+..-..++ -|..|=..
T Consensus 75 ---~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~d-----ial~~g~m 146 (335)
T PF08569_consen 75 ---SDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPD-----IALNCGDM 146 (335)
T ss_dssp ---HTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTT-----THHHHHHH
T ss_pred ---hCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCcc-----ccchHHHH
Confidence 12345566777777777777777777766666533210 0 000112445544444444222 34444445
Q ss_pred HHHhcCCCC-chh-H-HHHHHHHHHHhcCCchhhHHHHHHHHHHHHh----c-cccCcccHHHHHHHHHHhhCCCCHHHH
Q 002658 192 MVECASDPP-VVA-F-QKLCARICKLLSNQNFMAKASLLPVVGSLSQ----V-GAIAPQSLEPLLQSIHECLGSTDWATR 263 (896)
Q Consensus 192 IIE~a~d~~-~~y-L-~~LlPRL~kLLks~s~kaK~alL~aIgSLA~----v-ga~~~pyle~lLp~L~e~LsddDW~lR 263 (896)
+-|+++... ..+ | ...+-++++.++.++|.+-.-+...+..+.. + ...+..+++.+......+|.+++.-+|
T Consensus 147 lRec~k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtk 226 (335)
T PF08569_consen 147 LRECIKHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTK 226 (335)
T ss_dssp HHHHTTSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHH
T ss_pred HHHHHhhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEee
Confidence 556654432 111 1 1345568888899999876666666555532 1 134578888999988899999999999
Q ss_pred HHHHHHHHHHHHhcc--hHHHhhHHH--HHHHHHhhhcCCChhhHHHHHHHHHHHHHhc
Q 002658 264 KAAADALSALALHSS--NLVIDGATS--TLTVLEACRFDKIKPVRDSMNEALQLWKKIA 318 (896)
Q Consensus 264 KaA~EaLgsLA~avG--e~L~Py~~~--~I~~LE~~RfDKvKpVRDaA~eALe~WK~la 318 (896)
+.++..|+.|..-.. ..+.-|+.+ -++++-...-|+-|.++ .||...+|-+.
T Consensus 227 rqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq---~eAFhvFKvFV 282 (335)
T PF08569_consen 227 RQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQ---FEAFHVFKVFV 282 (335)
T ss_dssp HHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHH---HHHHHHHHHHH
T ss_pred hhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhh---HHHHHHHHHHH
Confidence 999999999987766 556667643 36666677778888555 57899999887
No 239
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=80.42 E-value=1.1e+02 Score=34.51 Aligned_cols=209 Identities=13% Similarity=0.141 Sum_probs=109.5
Q ss_pred HHHHHHHHHHcC----CChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHH-----Hhc
Q 002658 41 MKQKILTSLSKL----ADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCE-----LHS 111 (896)
Q Consensus 41 Lk~rll~~L~KL----sDRDT~k~Aa~eLD~La~~L~pd~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAe-----g~~ 111 (896)
+-..+++.|..+ +.-.+...++..|-.-...++.+.-..++..+...+.+.++.+|+.-++.+|.+.. ...
T Consensus 19 ~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~~~ 98 (339)
T PF12074_consen 19 LSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFLSSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSDSL 98 (339)
T ss_pred hHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCchHH
Confidence 334444444444 33334444444444433334333345667777777888999999999999999985 334
Q ss_pred ccchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHh-cccccCCch----hH-------h--hhHHHHHHHHhcC
Q 002658 112 ELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYL-NGKEENNGT----VV-------G--LFVKPLFEAMMEQ 177 (896)
Q Consensus 112 d~I~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li-~~~~e~~~~----~~-------~--~lL~pL~eaL~Eq 177 (896)
..+.+.++.++.++.+....|-+....-.. +|.++-.+. ....+.... .+ + .+-+.++..| .
T Consensus 99 ~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~--~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~kps~ll~~kvyskl--~ 174 (339)
T PF12074_consen 99 KFAEPFLPKLLQSLKEASANPLQSAQNGEL--VGAYVLLALSSWKLDKIDSKNISFWSLALDPKPSFLLSEKVYSKL--A 174 (339)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCccccccH--HHHHHHHHhccccchhhhhhhhhhhhhccCCCcchhcCHHHHhcc--C
Confidence 556778888888888888887765331111 111111110 000000000 00 0 0111222221 2
Q ss_pred CHhHHHHHHHHHHHHHHhcCCCCc-hhHHHHHHHHHHHhcCC--chhhHHHHHHHHHHHHhccccCcccHHHHHHHHHHh
Q 002658 178 NKGVQSGAAMCMAKMVECASDPPV-VAFQKLCARICKLLSNQ--NFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHEC 254 (896)
Q Consensus 178 nk~VQ~gAasALAkIIE~a~d~~~-~yL~~LlPRL~kLLks~--s~kaK~alL~aIgSLA~vga~~~pyle~lLp~L~e~ 254 (896)
.+....-.+.+|.++.-+...... .....+-.-++-++-++ ..++|..++.++..+....... .-..++..+-+.
T Consensus 175 ~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~--l~~~li~~l~~~ 252 (339)
T PF12074_consen 175 SEEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPEL--LSKSLISGLWKW 252 (339)
T ss_pred CHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChHH--HHHHHHHHHHHH
Confidence 334444566677666665433222 11234445566666676 8899999999999875422111 333444455444
Q ss_pred h
Q 002658 255 L 255 (896)
Q Consensus 255 L 255 (896)
|
T Consensus 253 l 253 (339)
T PF12074_consen 253 L 253 (339)
T ss_pred H
Confidence 4
No 240
>PF05536 Neurochondrin: Neurochondrin
Probab=79.26 E-value=1.5e+02 Score=36.15 Aligned_cols=180 Identities=14% Similarity=0.160 Sum_probs=105.2
Q ss_pred HHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhcCCH-hHHHHHHHHHHHHHHhcCCCCchhHH-HHHHHHH
Q 002658 135 GMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNK-GVQSGAAMCMAKMVECASDPPVVAFQ-KLCARIC 212 (896)
Q Consensus 135 ~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~Eqnk-~VQ~gAasALAkIIE~a~d~~~~yL~-~LlPRL~ 212 (896)
.-++.+...+.+++. .+... ....+..-+|.|++.|..... .+..=+..||..++ ..++.....+. .-+|.|+
T Consensus 72 ~~~~LavsvL~~f~~---~~~~a-~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia-s~~~G~~aLl~~g~v~~L~ 146 (543)
T PF05536_consen 72 EYLSLAVSVLAAFCR---DPELA-SSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIA-SSPEGAKALLESGAVPALC 146 (543)
T ss_pred HHHHHHHHHHHHHcC---Chhhh-cCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHH-cCcHhHHHHHhcCCHHHHH
Confidence 445555555555554 33221 124466688999999966555 66667899999999 33333333333 2667777
Q ss_pred HHhcCCchhhHHHHHHHHHHHH-hcc----ccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcch--HHHh--
Q 002658 213 KLLSNQNFMAKASLLPVVGSLS-QVG----AIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSSN--LVID-- 283 (896)
Q Consensus 213 kLLks~s~kaK~alL~aIgSLA-~vg----a~~~pyle~lLp~L~e~LsddDW~lRKaA~EaLgsLA~avGe--~L~P-- 283 (896)
.++.+..+ .+..++.++..+. ..+ ......+..+++.|...+....-..+-.+|+.|+.+....+. .-.+
T Consensus 147 ei~~~~~~-~~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~ 225 (543)
T PF05536_consen 147 EIIPNQSF-QMEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPS 225 (543)
T ss_pred HHHHhCcc-hHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCCh
Confidence 77776433 3455566555543 333 123455667777777776666666788889999998887741 1111
Q ss_pred --hHHHHHHHHHhhhcCCC-hhhHHHHHHHHHHHHHhccC
Q 002658 284 --GATSTLTVLEACRFDKI-KPVRDSMNEALQLWKKIAGK 320 (896)
Q Consensus 284 --y~~~~I~~LE~~RfDKv-KpVRDaA~eALe~WK~la~~ 320 (896)
...++...+..--..|. +.-|+.++..+...-.+.|.
T Consensus 226 ~~W~~~l~~gl~~iL~sr~~~~~R~~al~Laa~Ll~~~G~ 265 (543)
T PF05536_consen 226 PKWLSDLRKGLRDILQSRLTPSQRDPALNLAASLLDLLGP 265 (543)
T ss_pred hhhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCh
Confidence 13444444443333343 33678866666665555443
No 241
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=79.13 E-value=67 Score=42.80 Aligned_cols=206 Identities=12% Similarity=0.117 Sum_probs=105.7
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhhcCCChHH
Q 002658 57 THQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGM 136 (896)
Q Consensus 57 T~k~Aa~eLD~La~~L~pd~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrLkDpDs~V 136 (896)
..+.|-.-+.+++..+.+..=+.+..++....+ .....+. .....|-+ ++.....-|--|+|.+..-|.-.+-.+
T Consensus 201 a~~la~~li~~~a~~~~~~i~~f~~~~~~~~~s-~~~~~~~---~~he~i~~-L~~~~p~ll~~vip~l~~eL~se~~~~ 275 (1266)
T KOG1525|consen 201 ADKLASDLIERCADNLEDTIANFLNSCLTEYKS-RQSSLKI---KYHELILE-LWRIAPQLLLAVIPQLEFELLSEQEEV 275 (1266)
T ss_pred HHHHHHHHHHHhhhhhchhHHHHHHHHHhhccc-cccchhh---HHHHHHHH-HHHhhHHHHHHHHHHHHHHHhcchHHH
Confidence 445566667777776655333334455554432 1122222 22222222 222233346678888888898899999
Q ss_pred HHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhc
Q 002658 137 KEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLS 216 (896)
Q Consensus 137 R~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~a~d~~~~yL~~LlPRL~kLLk 216 (896)
|--+...+|++.......-+ +.++.+....+..+.+....|-....-+.--++-+.++..... .++-.+.. .
T Consensus 276 Rl~a~~lvg~~~~~~~~~l~----~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~~~~~~--~~~~~l~~--~ 347 (1266)
T KOG1525|consen 276 RLKAVKLVGRMFSDKDSQLS----ETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPSIAKAS--TILLALRE--R 347 (1266)
T ss_pred HHHHHHHHHHHHhcchhhhc----ccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCchhhhHH--HHHHHHHh--h
Confidence 99999999998877633222 2233344444455556666665443333333332222211110 01111111 1
Q ss_pred CCchhhHHHHHHHHHHHHhccccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHh
Q 002658 217 NQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALH 276 (896)
Q Consensus 217 s~s~kaK~alL~aIgSLA~vga~~~pyle~lLp~L~e~LsddDW~lRKaA~EaLgsLA~a 276 (896)
+..+.+|-...-+|..+ .+......|...+|..+.+.+-|.-|.+|+.|+..|..+...
T Consensus 348 ~~D~~~rir~~v~i~~~-~v~~~~l~~~~~ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~ 406 (1266)
T KOG1525|consen 348 DLDEDVRVRTQVVIVAC-DVMKFKLVYIPLLLKLVAERLRDKKIKVRKQAMNGLAQLYKN 406 (1266)
T ss_pred cCChhhhheeeEEEEEe-ehhHhhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 22333221111111111 011122344445778888889999999999999999888773
No 242
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=79.06 E-value=10 Score=46.73 Aligned_cols=144 Identities=15% Similarity=0.120 Sum_probs=98.7
Q ss_pred HhhhHHHHHHHHhc----CCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhc-CCchhhHHHHHHHHHHHHhcc
Q 002658 163 VGLFVKPLFEAMME----QNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLS-NQNFMAKASLLPVVGSLSQVG 237 (896)
Q Consensus 163 ~~~lL~pL~eaL~E----qnk~VQ~gAasALAkIIE~a~d~~~~yL~~LlPRL~kLLk-s~s~kaK~alL~aIgSLA~vg 237 (896)
+..|.|.+-+.... .++..|.+|-.||.++.=-. -.|..+=+|-|+..+. +|...+|+.++-.+|-++
T Consensus 890 Ls~F~pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS----~~fc~ehlpllIt~mek~p~P~IR~NaVvglgD~~--- 962 (1128)
T COG5098 890 LSNFKPVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLS----FEFCSEHLPLLITSMEKHPIPRIRANAVVGLGDFL--- 962 (1128)
T ss_pred HhhhhHHHHHHhccccccCCHHHHHHHHHHHHHHHHHh----HHHHHHHHHHHHHHHhhCCCcceeccceeeccccc---
Confidence 44444444444443 58999999999999986321 2456666778888885 899999987655555443
Q ss_pred ccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcchHHHhhHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHh
Q 002658 238 AIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSSNLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQLWKKI 317 (896)
Q Consensus 238 a~~~pyle~lLp~L~e~LsddDW~lRKaA~EaLgsLA~avGe~L~Py~~~~I~~LE~~RfDKvKpVRDaA~eALe~WK~l 317 (896)
-.|...++..-..|.+.|.|++..+|+.+.-++..+-.+--=++.-+.+.....|+ |.+..+.|. |=.|+-++
T Consensus 963 vcfN~~~de~t~yLyrrL~De~~~V~rtclmti~fLilagq~KVKGqlg~ma~~L~----deda~Isdm---ar~fft~~ 1035 (1128)
T COG5098 963 VCFNTTADEHTHYLYRRLGDEDADVRRTCLMTIHFLILAGQLKVKGQLGKMALLLT----DEDAEISDM---ARHFFTQI 1035 (1128)
T ss_pred eehhhhhHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHccceeeccchhhhHhhcc----CCcchHHHH---HHHHHHHH
Confidence 13556677777889999999999999999988887665544444444444444444 777767776 55677788
Q ss_pred ccC
Q 002658 318 AGK 320 (896)
Q Consensus 318 a~~ 320 (896)
+..
T Consensus 1036 a~K 1038 (1128)
T COG5098 1036 AKK 1038 (1128)
T ss_pred Hhc
Confidence 855
No 243
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.52 E-value=7.1 Score=42.12 Aligned_cols=92 Identities=14% Similarity=0.157 Sum_probs=68.3
Q ss_pred HhhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHH---h-ccc
Q 002658 163 VGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLS---Q-VGA 238 (896)
Q Consensus 163 ~~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~a~d~~~~yL~~LlPRL~kLLks~s~kaK~alL~aIgSLA---~-vga 238 (896)
+..+|+.+++.|.+.+-.----|-.-+.-++...++.+.+.|++|++-|-..|.+.+..+...+|.+|..+. . +|+
T Consensus 112 y~~yLp~F~dGL~e~~hpyrf~A~~Gi~DLLl~~g~kilpVLPqLI~plK~al~trd~ev~~~~Lkvlq~lv~~~~~vG~ 191 (262)
T KOG3961|consen 112 YCPYLPLFFDGLAETDHPYRFVARQGITDLLLAGGEKILPVLPQLILPLKAALVTRDDEVICRTLKVLQQLVVSVGCVGA 191 (262)
T ss_pred chHHHHHHhhhhhhcCCCcchhhhhcHHHHHHhcccccccccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhccccch
Confidence 456888888988654322222233344556666678888999999999999999988888888888888874 2 557
Q ss_pred cCcccHHHHHHHHHHh
Q 002658 239 IAPQSLEPLLQSIHEC 254 (896)
Q Consensus 239 ~~~pyle~lLp~L~e~ 254 (896)
...||...++|.+--+
T Consensus 192 aLVPfYRQlLp~~n~~ 207 (262)
T KOG3961|consen 192 ALVPFYRQLLPVLNTF 207 (262)
T ss_pred hhhhHHHHhhhhhhhh
Confidence 8899999999987554
No 244
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=76.33 E-value=27 Score=42.64 Aligned_cols=117 Identities=16% Similarity=0.141 Sum_probs=87.6
Q ss_pred hhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcc----ccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhc
Q 002658 202 VAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVG----AIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHS 277 (896)
Q Consensus 202 ~yL~~LlPRL~kLLks~s~kaK~alL~aIgSLA~vg----a~~~pyle~lLp~L~e~LsddDW~lRKaA~EaLgsLA~av 277 (896)
.-+.+++..++.+-+++...-| ++..+.+++.-- .-....+..++-.++..+.+.|..+|+.+|+.|..|...+
T Consensus 45 ~~flr~vn~IL~~Kk~~si~dR--il~fl~~f~~Y~~~~dpeg~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v 122 (885)
T COG5218 45 EEFLRVVNTILACKKNPSIPDR--ILSFLKRFFEYDMPDDPEGEELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVV 122 (885)
T ss_pred HHHHHHHHHhhccccCCCcHHH--HHHHHHHHHHhcCCCChhhhHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhc
Confidence 3455677777777776655443 455666665311 1124456677777888899999999999999999999999
Q ss_pred chHHHhhHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHhccC
Q 002658 278 SNLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQLWKKIAGK 320 (896)
Q Consensus 278 Ge~L~Py~~~~I~~LE~~RfDKvKpVRDaA~eALe~WK~la~~ 320 (896)
++-=......++..|...-||.-+.||--|+.+|-.++++.+-
T Consensus 123 ~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~n 165 (885)
T COG5218 123 REIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELN 165 (885)
T ss_pred chHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCC
Confidence 9644455688888999999999999998888888888876654
No 245
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=75.77 E-value=5.8 Score=38.95 Aligned_cols=69 Identities=19% Similarity=0.275 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhcCCCCCHHHHH------HHHhhhcCCCChhhHHHHHHHHHHHHH
Q 002658 38 MVEMKQKILTSLSKLADRDTHQIAIEDLEKTIQTLSQESLPMLL------NCLYESSNDPKPAVKKESVRLLALVCE 108 (896)
Q Consensus 38 ~~~Lk~rll~~L~KLsDRDT~k~Aa~eLD~La~~L~pd~Lp~fL------s~L~es~ss~k~~vRKeAIllLG~IAe 108 (896)
=+++-++|+.+|.+..|..+..+|+..|-.++..+|. . -.++ ..|-+-++++++.+|++|++++..+.-
T Consensus 41 ~~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~-g-r~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 41 NFELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPN-G-RNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp GGHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GG-G-HHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHccCCCcceeehhhcchHHHHHHChh-H-HHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 4788889999998888999999999999999998753 3 2222 233444688999999999999987764
No 246
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=75.40 E-value=6.8 Score=38.48 Aligned_cols=70 Identities=19% Similarity=0.313 Sum_probs=48.4
Q ss_pred HHHHHHHHhh-cCCChHHHHHHHHHHHHHHHHHhcccccCCchhHh--hhHHHHHHHHhcCCHhHHHHHHHHHHHHHH
Q 002658 120 KIISHIVKRL-KDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVG--LFVKPLFEAMMEQNKGVQSGAAMCMAKMVE 194 (896)
Q Consensus 120 kIL~~IlrrL-kDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~--~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE 194 (896)
+++-.+++.| ...|+.+-.+||.-||.+++++.. + -..+. .+-..+++.|...|+.|+.-|..|+.+++-
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~-g----r~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPN-G----RNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GG-G----HHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHChh-H----HHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 3455556666 334889999999999999999932 1 11221 133556777788999999999999999874
No 247
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=74.96 E-value=1.8e+02 Score=36.58 Aligned_cols=104 Identities=19% Similarity=0.190 Sum_probs=77.3
Q ss_pred HHHHHHHHhcCCchhhHHHHHHHHHHHH-hc---c---ccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcch
Q 002658 207 LCARICKLLSNQNFMAKASLLPVVGSLS-QV---G---AIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSSN 279 (896)
Q Consensus 207 LlPRL~kLLks~s~kaK~alL~aIgSLA-~v---g---a~~~pyle~lLp~L~e~LsddDW~lRKaA~EaLgsLA~avGe 279 (896)
=+..+.++|++.+|-.|.+.+.+.+-++ .. | ...+.-+..+|..|.+.|.|...-+|--|++.+..|-..-.
T Consensus 300 q~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~s- 378 (1128)
T COG5098 300 QYEHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNS- 378 (1128)
T ss_pred HHHHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCcc-
Confidence 3577889999999999999888877764 21 2 22345566777788888999999999999999988876443
Q ss_pred HHHhhHHHHHHHHHhhhcCCChhhHHHHHHHH
Q 002658 280 LVIDGATSTLTVLEACRFDKIKPVRDSMNEAL 311 (896)
Q Consensus 280 ~L~Py~~~~I~~LE~~RfDKvKpVRDaA~eAL 311 (896)
++.--...++...-.|.+|+--.||.-|+.-|
T Consensus 379 k~~~~r~ev~~lv~r~lqDrss~VRrnaikl~ 410 (1128)
T COG5098 379 KTVGRRHEVIRLVGRRLQDRSSVVRRNAIKLC 410 (1128)
T ss_pred cccchHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 22234567777777888899998998754443
No 248
>KOG1837 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.54 E-value=18 Score=48.11 Aligned_cols=98 Identities=12% Similarity=0.202 Sum_probs=78.3
Q ss_pred CChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhhcCC
Q 002658 53 ADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDS 132 (896)
Q Consensus 53 sDRDT~k~Aa~eLD~La~~L~pd~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrLkDp 132 (896)
.++..-+....++-+++.. +++++.++...+.-+.-+.....|-.|+..+..+..--++...++||+++|+|-..+.|-
T Consensus 1516 ~~~~v~~~li~~i~~~~~a-~~~d~~pl~~k~l~~trss~~~~r~~ai~~~~~l~~~lge~~~~lL~q~iPfLaEL~ED~ 1594 (1621)
T KOG1837|consen 1516 ASDIVSKLLIAEIASDSVA-DKDDLKPLNQKILKKTRSSSRKARYLAIIQVKLLYTKLGENVIVLLPQSIPFLAELMEDE 1594 (1621)
T ss_pred hhhHHHHHHHHHHHhhccC-ChhhhHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhcchhHHhhhhhhHHHHHHHhhh
Confidence 3343555555555555543 343488998888877777778899999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHHH
Q 002658 133 DSGMKEACRDSIGSLSKLY 151 (896)
Q Consensus 133 Ds~VR~Ac~~aLG~LA~~l 151 (896)
+-.|-..|...+-++=..+
T Consensus 1595 ~~~Ve~~~q~li~q~e~~l 1613 (1621)
T KOG1837|consen 1595 DDEVECLCQKLIRQLEEVL 1613 (1621)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 9999999998777666555
No 249
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.33 E-value=44 Score=39.00 Aligned_cols=136 Identities=15% Similarity=0.174 Sum_probs=104.3
Q ss_pred hhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHh-cc-ccCc
Q 002658 164 GLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQ-VG-AIAP 241 (896)
Q Consensus 164 ~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~a~d~~~~yL~~LlPRL~kLLks~s~kaK~alL~aIgSLA~-vg-a~~~ 241 (896)
..-++-|+-.|...|..|-.-|..-|..++-.-+......+-.|++++.++.-+..+.+|..++.++-.++. .+ ....
T Consensus 57 ~ltlkeLl~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~s 136 (393)
T KOG2149|consen 57 GLTLKELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQS 136 (393)
T ss_pred cccHHHHHhhhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhc
Confidence 345667777777788888877777777777653333334566788999999999999999999988887653 33 3378
Q ss_pred ccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcchHHHhhHHHH----HHHHHhhhcCC
Q 002658 242 QSLEPLLQSIHECLGSTDWATRKAAADALSALALHSSNLVIDGATST----LTVLEACRFDK 299 (896)
Q Consensus 242 pyle~lLp~L~e~LsddDW~lRKaA~EaLgsLA~avGe~L~Py~~~~----I~~LE~~RfDK 299 (896)
|++..+++.+.-.++.--..+|.-++-.|..++...++.|.-+...+ +.++...++++
T Consensus 137 p~~~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~~~~~~~~il~n~~d~i~~~~~~~ 198 (393)
T KOG2149|consen 137 PMVSLLMPYISSAMTHITPEIQEDSLKFLSLLLERYPDTFSRYASKILENFKDVISKLQFYK 198 (393)
T ss_pred chHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 99999999999999999999999999999999999998888775444 34455555553
No 250
>PF14868 DUF4487: Domain of unknown function (DUF4487)
Probab=73.40 E-value=1.9e+02 Score=35.58 Aligned_cols=76 Identities=18% Similarity=0.309 Sum_probs=49.9
Q ss_pred hHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHhcc--ccCcccHHHHHHHHHH-hhCCCCHHHHHHHHHHHHHHHHhcc
Q 002658 203 AFQKLCARICKLLSN-QNFMAKASLLPVVGSLSQVG--AIAPQSLEPLLQSIHE-CLGSTDWATRKAAADALSALALHSS 278 (896)
Q Consensus 203 yL~~LlPRL~kLLks-~s~kaK~alL~aIgSLA~vg--a~~~pyle~lLp~L~e-~LsddDW~lRKaA~EaLgsLA~avG 278 (896)
.+.+++-.+..++++ +.-.+|.++++.++++...- ......+-..|-.|+. .|.+.+|-+.-.|+|+++..|....
T Consensus 476 ~i~qv~~~l~~l~~~~pp~~~kl~~~~FLs~lg~~~i~~~~q~~~~~~Ls~Lf~~LL~d~~Wll~q~ALeAF~~FAe~T~ 555 (559)
T PF14868_consen 476 LIEQVLTELTSLFKSEPPDHVKLALLDFLSSLGKLFIPESDQNPVSPALSELFHMLLADRHWLLHQHALEAFGQFAERTS 555 (559)
T ss_pred HHHHHHHHHHHHHhhCCCccchHHHHHHHHHhccccCCccccchhhhHHHHHHHHHhcCCcHHHHHHHHHHHHHHhccCC
Confidence 355566666666633 44458888888888876422 2222222223334444 3788999999999999999998765
No 251
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=72.76 E-value=98 Score=37.13 Aligned_cols=153 Identities=10% Similarity=0.145 Sum_probs=93.9
Q ss_pred HHHHHHHHhhhcCCC--ChhhHHHHHHHH---HHHHHHhccc-chhhHHHHHHHHHHhhc--------CCChHHHHHHHH
Q 002658 77 LPMLLNCLYESSNDP--KPAVKKESVRLL---ALVCELHSEL-TSTHVTKIISHIVKRLK--------DSDSGMKEACRD 142 (896)
Q Consensus 77 Lp~fLs~L~es~ss~--k~~vRKeAIllL---G~IAeg~~d~-I~P~LpkIL~~IlrrLk--------DpDs~VR~Ac~~ 142 (896)
++..+.++.+.+.+. ....|..++..+ ..+...++.. +...=+.|...+.+.+. ..+...|.-+-+
T Consensus 317 ~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe 396 (501)
T PF13001_consen 317 FPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYE 396 (501)
T ss_pred CccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHHH
Confidence 445555555555444 667788888888 7777766654 44455555666666673 134689999999
Q ss_pred HHHHHHHHHhcccccCCchhHhhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCc-h-hHHH-HHHHHH-HHhcCC
Q 002658 143 SIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPV-V-AFQK-LCARIC-KLLSNQ 218 (896)
Q Consensus 143 aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~a~d~~~-~-yL~~-LlPRL~-kLLks~ 218 (896)
+||.|+...... + .+. -.++..||+.|.+..+.+-.+.-.||..+......... + .... ++..+. ....+.
T Consensus 397 ~lG~L~~~~p~l-~---~~d-~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~~~~~~~~~~~~~~~~l~~~~~~~~ 471 (501)
T PF13001_consen 397 TLGLLAKRAPSL-F---SKD-LSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKDLPDDEDEQKRLLLELLLLSYIQSE 471 (501)
T ss_pred HHHHHHccCccc-c---ccc-HHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccch
Confidence 999999998432 1 111 35889999999777777777777777777766433222 1 1111 111111 111233
Q ss_pred chhhHHHHHHHHHHHH
Q 002658 219 NFMAKASLLPVVGSLS 234 (896)
Q Consensus 219 s~kaK~alL~aIgSLA 234 (896)
...+|-+++...+++.
T Consensus 472 ~~~~R~~avk~an~~f 487 (501)
T PF13001_consen 472 VRSCRYAAVKYANACF 487 (501)
T ss_pred hHHHHHHHHHHHHHhC
Confidence 4456777777777664
No 252
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=72.33 E-value=19 Score=34.10 Aligned_cols=63 Identities=10% Similarity=0.007 Sum_probs=53.6
Q ss_pred ccchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhcC
Q 002658 112 ELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQ 177 (896)
Q Consensus 112 d~I~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~Eq 177 (896)
+.+.||.+.|+.+|...+.+-.+.||.-+...+..|.+++... -....|..+++..++.|+-.
T Consensus 3 ~~l~p~~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~---~~~~~~~kil~~f~~ll~~~ 65 (102)
T PF12333_consen 3 ELLSPFFPLLMLYISSAMTHISPDIREDSLKFLDLLLEHAPDE---LCSGGWVKILPNFLDLLGWS 65 (102)
T ss_pred HHHHhHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChH---hHhhhHHHHHHHHHHHHCCC
Confidence 4689999999999999999999999999999999999999433 12356889999999999533
No 253
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=72.17 E-value=34 Score=35.50 Aligned_cols=78 Identities=17% Similarity=0.147 Sum_probs=63.4
Q ss_pred hHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhccccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcchHHH
Q 002658 203 AFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSSNLVI 282 (896)
Q Consensus 203 yL~~LlPRL~kLLks~s~kaK~alL~aIgSLA~vga~~~pyle~lLp~L~e~LsddDW~lRKaA~EaLgsLA~avGe~L~ 282 (896)
..+.-+++++++.-+++.+++..++.+|..+..-| ...| ..++|.|.-..+|++..+|+.|.+.+..+..-.+..+.
T Consensus 5 l~Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qG-LvnP--~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~ 81 (187)
T PF12830_consen 5 LVQRYLKNILELCLSSDDSVRLAALQVLELILRQG-LVNP--KQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVE 81 (187)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcC-CCCh--HHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHH
Confidence 35566778888888999999999999999998655 2222 36899999999999999999999999999888776555
Q ss_pred h
Q 002658 283 D 283 (896)
Q Consensus 283 P 283 (896)
.
T Consensus 82 ~ 82 (187)
T PF12830_consen 82 S 82 (187)
T ss_pred H
Confidence 3
No 254
>cd05394 RasGAP_RASA2 RASA2 (or GAP1(m)) is a member of the GAP1 family of Ras GTPase-activating proteins that includes GAP1_IP4BP (or RASA3), CAPRI, and RASAL. In vitro, RASA2 has been shown to bind inositol 1,3,4,5-tetrakisphosphate (IP4), the water soluble inositol head group of the lipid second messenger phosphatidylinositol 3,4,5-trisphosphate (PIP3). In vivo studies also demonstrated that RASA2 binds PIP3, and it is recruited to the plasma membrane following agonist stimulation of PI 3-kinase. Furthermore, the membrane translocation is a consequence of the ability of its pleckstrin homology (PH) domain to bind PIP3.
Probab=72.12 E-value=78 Score=36.07 Aligned_cols=59 Identities=10% Similarity=0.236 Sum_probs=44.8
Q ss_pred hcccchhhHHHHHHHHHHhhcCCChHHHHH--HHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHh
Q 002658 110 HSELTSTHVTKIISHIVKRLKDSDSGMKEA--CRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMM 175 (896)
Q Consensus 110 ~~d~I~P~LpkIL~~IlrrLkDpDs~VR~A--c~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~ 175 (896)
|.+.+.|+|..++..=+....|+....|.- |-.++..++... | ..++...|.|+++.+.
T Consensus 47 ~~~~~~~fl~~li~~Ev~~t~~~~tLFRgNSlaTK~m~~y~k~~---G----~~YL~~tL~pvI~~i~ 107 (313)
T cd05394 47 HHQKLVPFVAAVAELDLKDTQEANTIFRGNSLATRCLDEMMKIV---G----KHYLKVTLKPVLDEIC 107 (313)
T ss_pred hcCcHHHHHHHHHHHHHHhcCCHhhHhhcCcHHHHHHHHHHHHH---H----HHHHHHHHHHHHHHHH
Confidence 335567888888888888899998888864 445577777666 2 3778889999999884
No 255
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=71.88 E-value=9.3 Score=36.13 Aligned_cols=57 Identities=21% Similarity=0.330 Sum_probs=51.6
Q ss_pred CHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhccc-chhhHHHHHHHHHHhhcCC
Q 002658 76 SLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSEL-TSTHVTKIISHIVKRLKDS 132 (896)
Q Consensus 76 ~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~-I~P~LpkIL~~IlrrLkDp 132 (896)
-++.++.+|...+.+-.+.+|..++..|..+.+.|++. +..+..+|++..+..|.-.
T Consensus 8 ~~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~~~~~~~~kil~~f~~ll~~~ 65 (102)
T PF12333_consen 8 FFPLLMLYISSAMTHISPDIREDSLKFLDLLLEHAPDELCSGGWVKILPNFLDLLGWS 65 (102)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChHhHhhhHHHHHHHHHHHHCCC
Confidence 36788888888899999999999999999999999988 7889999999998888766
No 256
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=71.81 E-value=82 Score=37.34 Aligned_cols=96 Identities=15% Similarity=0.249 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHH-HHHHHhcCCHhHHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHH
Q 002658 135 GMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKP-LFEAMMEQNKGVQSGAAMCMAKMVECASDPP-VVAFQKLCARIC 212 (896)
Q Consensus 135 ~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~p-L~eaL~Eqnk~VQ~gAasALAkIIE~a~d~~-~~yL~~LlPRL~ 212 (896)
..|-+|..+||.++.++.+ ..+..++.+ |+..|....-.-+..|+.-|........... .+..+.+.++|.
T Consensus 102 r~Ri~aA~ALG~l~~~~~~-------~~~~~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~ 174 (441)
T PF12054_consen 102 RARIAAAKALGLLLSYWPE-------SSLQEIFQPLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLL 174 (441)
T ss_pred HHHHHHHHHHHHHHHhccc-------chHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHH
Confidence 3488999999999999933 235667765 7777777777788889999998888753322 122577889999
Q ss_pred HHhcCC---ch--------hhHHHHHHHHHHHHhcc
Q 002658 213 KLLSNQ---NF--------MAKASLLPVVGSLSQVG 237 (896)
Q Consensus 213 kLLks~---s~--------kaK~alL~aIgSLA~vg 237 (896)
.+|.++ .| +++..+..++.++...|
T Consensus 175 ~~L~~~~~~~Y~El~~~l~~lr~ec~~Ll~~f~~~g 210 (441)
T PF12054_consen 175 EILENPEPPYYDELVPSLKRLRTECQQLLATFRDVG 210 (441)
T ss_pred HHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999843 22 24556777777776555
No 257
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.24 E-value=1.5e+02 Score=37.78 Aligned_cols=220 Identities=17% Similarity=0.138 Sum_probs=124.7
Q ss_pred HcCCChhHHHHHHHHHHHHHhcCC-------CC---CH-----------HHHHHHHhhhcCCCChhhHHHHHHHHHHHHH
Q 002658 50 SKLADRDTHQIAIEDLEKTIQTLS-------QE---SL-----------PMLLNCLYESSNDPKPAVKKESVRLLALVCE 108 (896)
Q Consensus 50 ~KLsDRDT~k~Aa~eLD~La~~L~-------pd---~L-----------p~fLs~L~es~ss~k~~vRKeAIllLG~IAe 108 (896)
+.+.|.+..+++++.|--+..+=+ +. ++ .-++.+|.......+-.+|..+|.+|.++..
T Consensus 72 ~D~~D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls 151 (970)
T KOG0946|consen 72 RDYMDPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLS 151 (970)
T ss_pred hccCCHHHHHHHHHHHHHHHhcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHh
Confidence 455778888888877665554211 10 01 1234455555556678899999999999998
Q ss_pred Hhcccc---hhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhc-CC---HhH
Q 002658 109 LHSELT---STHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMME-QN---KGV 181 (896)
Q Consensus 109 g~~d~I---~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~E-qn---k~V 181 (896)
..+.-+ .-..|.=|+.++..|.|..-.||+.+.-.|..|+..... .+ .--.+..++..||..+.+ .+ --|
T Consensus 152 ~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~--IQ-KlVAFENaFerLfsIIeeEGg~dGgIV 228 (970)
T KOG0946|consen 152 CRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSS--IQ-KLVAFENAFERLFSIIEEEGGLDGGIV 228 (970)
T ss_pred cCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCch--HH-HHHHHHHHHHHHHHHHHhcCCCCCcch
Confidence 777433 334577788899999999999999998888777765511 00 001244555666666632 21 123
Q ss_pred HHHHHHHHHHHHHh-cCCCCchhHH--HHHHHHHHHhcCCchh-----------hHH--HHHHHHHHHHhcc-cc-C-cc
Q 002658 182 QSGAAMCMAKMVEC-ASDPPVVAFQ--KLCARICKLLSNQNFM-----------AKA--SLLPVVGSLSQVG-AI-A-PQ 242 (896)
Q Consensus 182 Q~gAasALAkIIE~-a~d~~~~yL~--~LlPRL~kLLks~s~k-----------aK~--alL~aIgSLA~vg-a~-~-~p 242 (896)
-+-+..-|-.++.+ ..++ .|+. .-+|||.++|.-+-|. +.+ -+|.+|.+++..| .. . ..
T Consensus 229 veDCL~ll~NLLK~N~SNQ--~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q 306 (970)
T KOG0946|consen 229 VEDCLILLNNLLKNNISNQ--NFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQ 306 (970)
T ss_pred HHHHHHHHHHHHhhCcchh--hHHhccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHH
Confidence 33333334444443 1111 2322 2567888777654222 111 4666777776544 11 1 11
Q ss_pred c---H--HHHHHHHHHhhCCCC--HHHHHHHHHHHHHHH
Q 002658 243 S---L--EPLLQSIHECLGSTD--WATRKAAADALSALA 274 (896)
Q Consensus 243 y---l--e~lLp~L~e~LsddD--W~lRKaA~EaLgsLA 274 (896)
. + ..+|..|...|.+++ ..++..++-+++.+.
T Consensus 307 ~qk~l~ss~ll~~Lc~il~~~~vp~dIltesiitvAevV 345 (970)
T KOG0946|consen 307 NQKALVSSHLLDVLCTILMHPGVPADILTESIITVAEVV 345 (970)
T ss_pred HHHHHHHcchHHHHHHHHcCCCCcHhHHHHHHHHHHHHH
Confidence 1 1 135566777787764 445555554444443
No 258
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=70.31 E-value=8.3 Score=29.91 Aligned_cols=28 Identities=32% Similarity=0.236 Sum_probs=21.6
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 002658 247 LLQSIHECLGSTDWATRKAAADALSALA 274 (896)
Q Consensus 247 lLp~L~e~LsddDW~lRKaA~EaLgsLA 274 (896)
.+|.|.++|.+.+..+|+.|+-+|+.|+
T Consensus 13 ~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 13 GIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 4677777788888888888888887775
No 259
>PF10350 DUF2428: Putative death-receptor fusion protein (DUF2428); InterPro: IPR019442 This domain is found in a family of proteins of unknown function that are conserved from plants to humans. Several of these proteins have been annotated as being HEAT repeat-containing proteins while others are designated as death-receptor interacting proteins, but neither of these has yet been confirmed. Aberrations in the genes encoding these proteins have been observed in benign thyroid adenomas [].
Probab=69.49 E-value=1.3e+02 Score=32.83 Aligned_cols=131 Identities=11% Similarity=0.093 Sum_probs=82.0
Q ss_pred hhHhhhHHHHHHHHh-cCCHhHHHHHHHHHHHHHHhcC---CCCc-hhHHHHHHHHHHHhcCC--c---hhhHHH-HHHH
Q 002658 161 TVVGLFVKPLFEAMM-EQNKGVQSGAAMCMAKMVECAS---DPPV-VAFQKLCARICKLLSNQ--N---FMAKAS-LLPV 229 (896)
Q Consensus 161 ~~~~~lL~pL~eaL~-Eqnk~VQ~gAasALAkIIE~a~---d~~~-~yL~~LlPRL~kLLks~--s---~kaK~a-lL~a 229 (896)
+.+..+..-++..|. -....+-+.+.-+|..+|+.+- +... .+....+..++..+.+. . ...|.+ +--+
T Consensus 92 ~~i~~ig~~l~~~L~~~rHrGAfe~~~~~f~~lc~~l~~~~~~~l~~LP~~WL~~~l~~i~~~~~~~~~iTRRSAGLP~~ 171 (255)
T PF10350_consen 92 DQIEKIGELLIEQLLEIRHRGAFESVYPGFTALCRRLWSSNNPELSELPEEWLDELLEAIESKGQQKLSITRRSAGLPFL 171 (255)
T ss_pred HHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHhcCCCchHHHhHHHHHHHHHHHHhcccccccccccccCcHHHH
Confidence 445555566666663 3467788888888999998752 2222 23445666677777665 1 233443 3334
Q ss_pred HHHHHhcc-ccCcccHHHHHHHHHHhhCCCC--------HHHHHHHHHHHHHHHHhcc--hHHHhhHHHHHHH
Q 002658 230 VGSLSQVG-AIAPQSLEPLLQSIHECLGSTD--------WATRKAAADALSALALHSS--NLVIDGATSTLTV 291 (896)
Q Consensus 230 IgSLA~vg-a~~~pyle~lLp~L~e~LsddD--------W~lRKaA~EaLgsLA~avG--e~L~Py~~~~I~~ 291 (896)
|.++..+. ....+.+...|..|+++...+. -..+-.|+.+|-.|-.-.. +...||+.+.+.+
T Consensus 172 i~aiL~ae~~~~~~ll~~~~~~Ll~ia~~~~~~~~~~~~d~~qVHAlNiLr~if~ds~L~~~~~~yi~~~l~l 244 (255)
T PF10350_consen 172 ILAILSAEPSNSRPLLHRTMKSLLEIAKSPSTQHEDEKSDLPQVHALNILRAIFRDSKLSEDVSPYIEDALIL 244 (255)
T ss_pred HHHHHhcCCCcchhHHHHHHHHHHHHhcCCcccccccccchHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence 55554443 2223788899999999876532 2467788888877766544 7788888777653
No 260
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=68.60 E-value=24 Score=42.85 Aligned_cols=55 Identities=16% Similarity=0.105 Sum_probs=26.4
Q ss_pred hhhHHHHHHHHHHHHhccccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhc
Q 002658 220 FMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHS 277 (896)
Q Consensus 220 ~kaK~alL~aIgSLA~vga~~~pyle~lLp~L~e~LsddDW~lRKaA~EaLgsLA~av 277 (896)
.++|..+-..|.-++. .|+..-+..|.+++++..|+|..+|+.|+..|..++...
T Consensus 36 ~k~K~Laaq~I~kffk---~FP~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~ 90 (556)
T PF05918_consen 36 PKEKRLAAQFIPKFFK---HFPDLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDN 90 (556)
T ss_dssp HHHHHHHHHHHHHHHC---C-GGGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T-
T ss_pred HHHHHHHHHHHHHHHh---hChhhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhH
Confidence 4444444444444442 455555555555555555555556655555555554443
No 261
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.31 E-value=2.5e+02 Score=34.44 Aligned_cols=161 Identities=15% Similarity=0.133 Sum_probs=106.7
Q ss_pred chhhHHHHHHHHHHhhcCCC------------hHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhc--CCH
Q 002658 114 TSTHVTKIISHIVKRLKDSD------------SGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMME--QNK 179 (896)
Q Consensus 114 I~P~LpkIL~~IlrrLkDpD------------s~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~E--qnk 179 (896)
..||..+++..+.++++=|. ...|-...+.+.-.+..+ + -.+.++.++-.+.+ +..
T Consensus 334 frpy~~rLvs~l~~h~qlp~~~~~l~Ee~~~f~~fR~~v~dvl~Dv~~ii---g-------s~e~lk~~~~~l~e~~~~W 403 (559)
T KOG2081|consen 334 FRPYFLRLVSLLKRHVQLPPDQFDLPEEESEFFEFRLKVGDVLKDVAFII---G-------SDECLKQMYIRLKENNASW 403 (559)
T ss_pred hHHHHHHHHHHHHHHccCCCccccCccchhHHHHHHHHHHHHHHHHHHHh---C-------cHHHHHHHHHHHccCCCch
Confidence 36899999999999887654 366888888888777777 3 13455666666655 356
Q ss_pred hHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchh--hHHHHHHHHHHHHhccccCcccHHHHHHHHHHhhCC
Q 002658 180 GVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFM--AKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGS 257 (896)
Q Consensus 180 ~VQ~gAasALAkIIE~a~d~~~~yL~~LlPRL~kLLks~s~k--aK~alL~aIgSLA~vga~~~pyle~lLp~L~e~Lsd 257 (896)
..-+||.-+|..+..+.... =+.+||.+++++-+...+ ++...+-.||.+...=+.-+..++.++..+...++.
T Consensus 404 e~~EAaLF~l~~~~~~~~~~----e~~i~pevl~~i~nlp~Q~~~~~ts~ll~g~~~ew~~~~p~~le~v~~~~~~~~~~ 479 (559)
T KOG2081|consen 404 EEVEAALFILRAVAKNVSPE----ENTIMPEVLKLICNLPEQAPLRYTSILLLGEYSEWVEQHPELLEPVLRYIRQGLQL 479 (559)
T ss_pred HHHHHHHHHHHHHhccCCcc----ccchHHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhhh
Confidence 67789999999999875322 134788888888776554 444555566766432123455666677777777766
Q ss_pred CCHHHHHHHHHHHHHHHHhcchHHHhhHHHHHH
Q 002658 258 TDWATRKAAADALSALALHSSNLVIDGATSTLT 290 (896)
Q Consensus 258 dDW~lRKaA~EaLgsLA~avGe~L~Py~~~~I~ 290 (896)
.. +-.+|+-++..|....-....++++++..
T Consensus 480 ~~--~as~~a~~~~~i~~~c~~~~~~l~~~~~~ 510 (559)
T KOG2081|consen 480 KR--LASAAALAFHRICSACRVQMTCLIPSLLE 510 (559)
T ss_pred cc--hhHHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 54 55566667777777776555555544443
No 262
>PF02854 MIF4G: MIF4G domain; InterPro: IPR003890 This entry represents an MIF4G-like domain. MIF4G domains share a common structure but can differ in sequence. This entry is designated "type 3", and is found in nuclear cap-binding proteins, eIF4G, and UPF2. The MIF4G domain is a structural motif with an ARM (Armadillo) repeat-type fold, consisting of a 2-layer alpha/alpha right-handed superhelix. Proteins usually contain two or more structurally similar MIF4G domains connected by unstructured linkers. MIF4G domains are found in several proteins involved in RNA metabolism, including eIF4G (eukaryotic initiation factor 4-gamma), eIF-2b (translation initiation factor), UPF2 (regulator of nonsense transcripts 2), and nuclear cap-binding proteins (CBP80, CBC1, NCBP1), although the sequence identity between them may be low []. The nuclear cap-binding complex (CBC) is a heterodimer. Human CBC consists of a large CBP80 subunit and a small CBP20 subunit, the latter being critical for cap binding. CBP80 contains three MIF4G domains connected with long linkers, while CBP20 has an RNP (ribonucleoprotein)-type domain that associates with domains 2 and 3 of CBP80 []. The complex binds to 5'-cap of eukaryotic RNA polymerase II transcripts, such as mRNA and U snRNA. The binding is important for several mRNA nuclear maturation steps and for nonsense-mediated decay. It is also essential for nuclear export of U snRNAs in metazoans []. Eukaryotic translation initiation factor 4 gamma (eIF4G) plays a critical role in protein expression, and is at the centre of a complex regulatory network. Together with the cap-binding protein eIF4E, it recruits the small ribosomal subunit to the 5'-end of mRNA and promotes the assembly of a functional translation initiation complex, which scans along the mRNA to the translation start codon. The activity of eIF4G in translation initiation could be regulated through intra- and inter-protein interactions involving the ARM repeats []. In eIF4G, the MIF4G domain binds eIF4A, eIF3, RNA and DNA. Nonsense-mediated mRNA decay (NMD) in eukaryotes involves UPF1, UPF2 and UPF3 to accelerate the decay rate of two unique classes of transcripts: (1) nonsense mRNAs that arise through errors in gene expression, and (2) naturally occurring transcripts that lack coding errors but have built-in features that target them for accelerated decay (error-free mRNAs). NMD can trigger decay during any round of translation and can target CBC-bound or eIF-4E-bound transcripts []. UPF2 contains MIF4G domains, while UPF3 contains an RNP domain []. ; GO: 0005515 protein binding, 0016070 RNA metabolic process; PDB: 3FEY_A 3FEX_A 1H6K_C 1H2V_C 1H2U_A 1H2T_C 1N54_A 1N52_A 1HU3_A 3RK6_A ....
Probab=67.43 E-value=1.3e+02 Score=30.11 Aligned_cols=83 Identities=19% Similarity=0.243 Sum_probs=45.5
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhc-ccchhhHHHH
Q 002658 43 QKILTSLSKLADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHS-ELTSTHVTKI 121 (896)
Q Consensus 43 ~rll~~L~KLsDRDT~k~Aa~eLD~La~~L~pd~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~-d~I~P~LpkI 121 (896)
+++-.+|+|+.+. .....+.+|..+....+++.+..++..|.+.... .|.....+..+++.+...++ +.....+..+
T Consensus 2 r~v~~~lnklt~~-n~~~~~~~l~~~~~~~~~~~~~~i~~~i~~~a~~-~~~~~~~~a~l~~~l~~~~~~~f~~~ll~~~ 79 (209)
T PF02854_consen 2 RKVRGILNKLTPS-NFESIIDELIKLNWSDDPETLKEIVKLIFEKAVE-EPNFSPLYARLCAALNSRFPSEFRSLLLNRC 79 (209)
T ss_dssp HHHHHHHHHCSST-THHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH-SGGGHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred chHHHHHHHCCHH-HHHHHHHHHHHHHhhccHHHHHHHHHHHhhhhhc-CchHHHHHHHHHHHHhccchhhHHHHHHHHH
Confidence 4577789999855 4445555555555543444577777777765321 23444455555555655555 3333334444
Q ss_pred HHHHHH
Q 002658 122 ISHIVK 127 (896)
Q Consensus 122 L~~Ilr 127 (896)
...+..
T Consensus 80 ~~~f~~ 85 (209)
T PF02854_consen 80 QEEFEE 85 (209)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444433
No 263
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=67.29 E-value=1.8e+02 Score=41.43 Aligned_cols=199 Identities=14% Similarity=0.102 Sum_probs=117.8
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhccc-ccCCchhHhhhHHHHHHHHhc--CCHhHHHHHHHHHHHHHHhcC
Q 002658 121 IISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGK-EENNGTVVGLFVKPLFEAMME--QNKGVQSGAAMCMAKMVECAS 197 (896)
Q Consensus 121 IL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~-~e~~~~~~~~lL~pL~eaL~E--qnk~VQ~gAasALAkIIE~a~ 197 (896)
++.-+...|++....++..+..-+..+....+... .......+..+...+++...+ .+..+-.+.+.++...+++..
T Consensus 6 ~~~~~~~~l~~~~~~~~~~~s~e~~~~~~~~~~~~~~~~~~~f~~~l~~n~~~l~~~~~~~~~~~~~~~~~~~~~~~~t~ 85 (2341)
T KOG0891|consen 6 VLKQYFSGLKSRNKSEQAQAARELFNYVTSELRELSAEESARFSNDLNHNIFELVHCLDSNERIGGILAIALLISFEGTE 85 (2341)
T ss_pred HHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcccchhhHHHHHHHHHhhhcc
Confidence 34456667777777666555444444444333321 111123344455555555533 233333444444555555322
Q ss_pred CCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcc-ccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHh
Q 002658 198 DPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVG-AIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALH 276 (896)
Q Consensus 198 d~~~~yL~~LlPRL~kLLks~s~kaK~alL~aIgSLA~vg-a~~~pyle~lLp~L~e~LsddDW~lRKaA~EaLgsLA~a 276 (896)
... -....+--+|-.++.+.+...=.....++|-++..+ -....+++-.+..+++-+.+..---|-+|+-.+..++..
T Consensus 86 ~~~-~~~s~~~n~l~~l~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~v~~~~k~~~ew~~~~~~~~~~~a~~~~~~l~~~ 164 (2341)
T KOG0891|consen 86 HDR-KNISRLANYLRYLLPSNDVEVMELAAKSLGLLAAPGKTKTAELVDFEVKRLIEWLGERQEYRRLAAVLIIKELADN 164 (2341)
T ss_pred ccc-chhHhHHHHHHHhhccCChHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhHhhc
Confidence 111 112222233333333333322223445566665444 344677777888888888665556677888889999999
Q ss_pred cchHHHhhHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHhccC
Q 002658 277 SSNLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQLWKKIAGK 320 (896)
Q Consensus 277 vGe~L~Py~~~~I~~LE~~RfDKvKpVRDaA~eALe~WK~la~~ 320 (896)
+|..+.|++..+.+.+-....|...-+|..+..||..-....+.
T Consensus 165 ~P~~~~~~~~~~~~~i~~~~~~~~~~i~~~a~~al~~~~~~~~~ 208 (2341)
T KOG0891|consen 165 VPTFFYPYVNKFFKNIFAALRDPKPAIRLQACSALHAVLSSLAQ 208 (2341)
T ss_pred CcHHHHHHHHHHHHHHHHhccCCChhhhHHHHHHHHHHHhhhhh
Confidence 99999999999999999999998888999988888886655543
No 264
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=67.27 E-value=6e+02 Score=37.77 Aligned_cols=72 Identities=13% Similarity=0.182 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHH
Q 002658 136 MKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLC 208 (896)
Q Consensus 136 VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~a~d~~~~yL~~Ll 208 (896)
.|.+|.++++...... +-....+..+-..++.++|..|-...+..+++|..||-.++..-.....+.++..+
T Consensus 1249 Lr~~ci~ll~~~~~~~-d~~~~~~~~~r~kii~v~fk~l~~~~~Ei~~~~~~~l~~v~~~~~~~~ke~lq~~l 1320 (3550)
T KOG0889|consen 1249 LRVACIKLLAACMKLS-DFRTPQHAELREKIIAVFFKSLYKRSSELIEVALEGLRKVLAQDVKLPKELLQSHL 1320 (3550)
T ss_pred chhHHHHHHHHHHhcc-cccchhhhhhhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhhccccccHHHHHhhH
Confidence 3667777766665555 21112234556778889999998899999999999999999865555555666655
No 265
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.72 E-value=47 Score=42.60 Aligned_cols=101 Identities=13% Similarity=0.091 Sum_probs=78.4
Q ss_pred hHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhc
Q 002658 117 HVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECA 196 (896)
Q Consensus 117 ~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~a 196 (896)
.+.+|+...++.|.+++-.+|-.+.+++.--...+..... .--.....+-+++++.+...|+-+-.-|+.|+..+++-+
T Consensus 800 iv~kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n-~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~s 878 (1014)
T KOG4524|consen 800 IVLKILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHN-LLLPLVHQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYS 878 (1014)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccch-hHhHHHHhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHh
Confidence 3678888888999999999999999998876666633210 000224445678899999999999999999999999999
Q ss_pred CCCCc-hhHHHHHHHHHHHhcCC
Q 002658 197 SDPPV-VAFQKLCARICKLLSNQ 218 (896)
Q Consensus 197 ~d~~~-~yL~~LlPRL~kLLks~ 218 (896)
++-+. -++..++|++..++..-
T Consensus 879 gDFv~sR~l~dvlP~l~~~~~~~ 901 (1014)
T KOG4524|consen 879 GDFVASRFLEDVLPWLKHLCQDS 901 (1014)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Confidence 88665 47888999998777654
No 266
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=66.66 E-value=27 Score=32.51 Aligned_cols=63 Identities=22% Similarity=0.260 Sum_probs=50.7
Q ss_pred CCChhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhhcCCCh--HHHHHHHHHHHHHHHHHh
Q 002658 90 DPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDS--GMKEACRDSIGSLSKLYL 152 (896)
Q Consensus 90 s~k~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrLkDpDs--~VR~Ac~~aLG~LA~~li 152 (896)
+..|..|..|..+|+.++.-|+..-..-.++|+-++.+.|.||.. ..+--|...|..|....+
T Consensus 17 ~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~lG~~~v 81 (92)
T PF07571_consen 17 DNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSALGPEAV 81 (92)
T ss_pred cchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 456999999999999999999987666778999999999999975 346666666666655553
No 267
>PF04003 Utp12: Dip2/Utp12 Family; InterPro: IPR007148 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]. This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. This domain is found at the C terminus of proteins containing WD40 repeats. These proteins are part of the U3 ribonucleoprotein. In yeast, these proteins are called Utp5, Utp1 or Pwp2, Utp12 or DIP2 Q12220 from SWISSPROT. They interact with snoRNA U3 and with MPP10 []. Pwp2 is an essential Saccharomyces cerevisiae (Baker's yeast) protein involved in cell separation.
Probab=65.73 E-value=28 Score=32.49 Aligned_cols=88 Identities=19% Similarity=0.235 Sum_probs=67.4
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccch---hhHHHHHHHHHHhhcCCChHHHH
Q 002658 62 IEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTS---THVTKIISHIVKRLKDSDSGMKE 138 (896)
Q Consensus 62 a~eLD~La~~L~pd~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I~---P~LpkIL~~IlrrLkDpDs~VR~ 138 (896)
...++..+..||...+..+|.+|.+.+...++..=+-++.-+-.+...|+..+. +.+...+..+.+.+...-..+++
T Consensus 15 ~~~I~~tv~~Lp~~~~~~LL~~l~~~l~~~~~~~~e~~l~Wl~~ll~~H~~~l~~~~~~~~~~L~~L~~~l~~~~~~l~~ 94 (110)
T PF04003_consen 15 PSDIENTVRSLPFSYAERLLQFLSERLQTRKSPHVEFLLRWLKALLKTHGSYLSSSSPELRPVLRSLQKILRERLQNLSK 94 (110)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788888888877899999999866544555666788889999999998764 45777777788888777777788
Q ss_pred HHHHHHHHHHH
Q 002658 139 ACRDSIGSLSK 149 (896)
Q Consensus 139 Ac~~aLG~LA~ 149 (896)
.|..-+|+|--
T Consensus 95 l~~~n~~~L~~ 105 (110)
T PF04003_consen 95 LLDLNLGRLDY 105 (110)
T ss_pred HHHHhHHHHHH
Confidence 87777776643
No 268
>COG5234 CIN1 Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones / Cytoskeleton]
Probab=65.50 E-value=1.7e+02 Score=36.95 Aligned_cols=242 Identities=13% Similarity=0.124 Sum_probs=126.3
Q ss_pred CChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhccc-chhhHHHHHH--------
Q 002658 53 ADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSEL-TSTHVTKIIS-------- 123 (896)
Q Consensus 53 sDRDT~k~Aa~eLD~La~~L~pd~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~-I~P~LpkIL~-------- 123 (896)
-|..+.....=.|..++. .+..+|.||+-|.+...+.-. - ....|..++.++... =.|.+..|+.
T Consensus 474 ~~~~~k~~~~y~l~~liK--~~~~~p~yl~~Il~k~~sdfi---~-~~~il~~~~k~F~~~~~~~rihei~~~i~q~kIk 547 (993)
T COG5234 474 WDVKVKQLSAYSLRQLIK--YPKELPIYLPPILDKLSSDFI---F-GYTILASIIKGFLFPFDINRIHEILSHIQQTKIK 547 (993)
T ss_pred cchhhhhhccccHHHHhc--CcccCchhhhHHhhhCchhhh---c-chhhHHHHHHHhcCccCCccHHHHHHHHHHhhee
Confidence 356677777777888877 676788889888877643211 1 112244555555322 1333333333
Q ss_pred -----HHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccC-----------C----chhHhhhHHHHHHHHh--cCCHhH
Q 002658 124 -----HIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEEN-----------N----GTVVGLFVKPLFEAMM--EQNKGV 181 (896)
Q Consensus 124 -----~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~-----------~----~~~~~~lL~pL~eaL~--Eqnk~V 181 (896)
-+.+.+.|..+..|.-+...++.+.... + +++ + .+.+++.+..++.... +..+.+
T Consensus 548 l~i~~~~~r~f~d~~~~f~~F~~~~~~vi~g~~-D--~~~e~~idiVs~~~~~ll~~~~~p~~~~~~~~~~v~~~~~~~a 624 (993)
T COG5234 548 LGILKGIQRIFADDIRVFRAFFSEAFSVIIGAI-D--LQEETIIDIVSDAYSVLLKFDDMPETLEVLLDYIVKCSTSKEA 624 (993)
T ss_pred ecCChHHHHHhcccchHHHHHHHHHHHHHhhhh-h--hhHhhHHHHhcchHHhhhhccccHHHHHHHHHHHHhccchhHH
Confidence 3444477877877888888887776654 1 110 0 0112222222222221 122333
Q ss_pred HHHHHHHHHHHHHhcCCCC--chhHHHHHHHHHHHhcCCchhhHHHHHHHHHH-HH--hcc--ccCcccHHHHHHHHHHh
Q 002658 182 QSGAAMCMAKMVECASDPP--VVAFQKLCARICKLLSNQNFMAKASLLPVVGS-LS--QVG--AIAPQSLEPLLQSIHEC 254 (896)
Q Consensus 182 Q~gAasALAkIIE~a~d~~--~~yL~~LlPRL~kLLks~s~kaK~alL~aIgS-LA--~vg--a~~~pyle~lLp~L~e~ 254 (896)
|. ...+.++.+..+ .+|-+++|--+++..-.-+.+-+.+.++...- ++ ... .....|.+.++.+|-++
T Consensus 625 ri-----v~si~~~t~sli~~~~~qek~c~l~~~~yp~L~~~~~s~~I~~~~h~~V~~t~~~S~sie~fr~~iln~l~nY 699 (993)
T COG5234 625 RI-----VYSILQNTPSLIISFRYQEKICKLLLDIYPQLHSIDYSAPIANALHNIVPFTYEKSESIEEFRKEILNVLSNY 699 (993)
T ss_pred HH-----HHHHhccCchhhhcCccHHHHHHHHHHhhhhhcccccccchhhhhhcchhhhccccccHHHHHHHHHHHHhhh
Confidence 31 122223333222 24555555444433222111111111111110 11 111 34467778888888888
Q ss_pred hCCC----CHHHHHHHHHHHHHHHHhcchHHHhhHHHHHHHHHhhhcCCChhhHHHHHHHHHHHH
Q 002658 255 LGST----DWATRKAAADALSALALHSSNLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQLWK 315 (896)
Q Consensus 255 Lsdd----DW~lRKaA~EaLgsLA~avGe~L~Py~~~~I~~LE~~RfDKvKpVRDaA~eALe~WK 315 (896)
+.+. ..-+|+.|+.++.+...---+...| ++-...+||++..|..+.+|++-..
T Consensus 700 ~~d~rGDVgs~iR~~a~klm~SfL~kD~~~~~~-------y~iR~~~dki~~lR~l~yqa~eqI~ 757 (993)
T COG5234 700 LTDTRGDVGSWIRKPAMKLMSSFLVKDSSGKKL-------YIIRQTFDKIDSLRGLAYQALEQIR 757 (993)
T ss_pred ccccccchhHHHHHHHHHHHHHHhhccccCCch-------hHHHHhhcccHHHHhhhhhhhhhee
Confidence 8774 2448999999988854433332223 5667788999999999888776543
No 269
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.96 E-value=2.1e+02 Score=33.30 Aligned_cols=173 Identities=14% Similarity=0.158 Sum_probs=105.0
Q ss_pred CChhHHHHHHHHHHHHHh------cC-CCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccchh------hHH
Q 002658 53 ADRDTHQIAIEDLEKTIQ------TL-SQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTST------HVT 119 (896)
Q Consensus 53 sDRDT~k~Aa~eLD~La~------~L-~pd~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I~P------~Lp 119 (896)
-|.+.-.-+...|..++- .+ ....|..++.||-+...+..-..-|.|+.+|-.++-. |.+.. -++
T Consensus 254 ~dp~~L~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~--DsvKs~IV~~gg~~ 331 (461)
T KOG4199|consen 254 IDPDSLVSLSTTLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGS--DSVKSTIVEKGGLD 331 (461)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCC--CchHHHHHHhcChH
Confidence 467766666666665552 11 1234889999998755433222335566666555432 33322 478
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhH-hhhHHHHHHHHhc--CCHhHHHHHHHHHHHHHHhc
Q 002658 120 KIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVV-GLFVKPLFEAMME--QNKGVQSGAAMCMAKMVECA 196 (896)
Q Consensus 120 kIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~-~~lL~pL~eaL~E--qnk~VQ~gAasALAkIIE~a 196 (896)
+|+....+.+. +|.|-+.++-+|..|+-.-.++. ...+ .-.-...+++|.. +...||.-||..+-.++-..
T Consensus 332 ~ii~l~~~h~~--~p~Vi~~~~a~i~~l~LR~pdhs----a~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs 405 (461)
T KOG4199|consen 332 KIITLALRHSD--DPLVIQEVMAIISILCLRSPDHS----AKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRS 405 (461)
T ss_pred HHHHHHHHcCC--ChHHHHHHHHHHHHHHhcCcchH----HHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhh
Confidence 88888888774 45576777767766664442220 0000 0012334567732 35679999999999999776
Q ss_pred CCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHH
Q 002658 197 SDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSL 233 (896)
Q Consensus 197 ~d~~~~yL~~LlPRL~kLLks~s~kaK~alL~aIgSL 233 (896)
.....+.|..=+.+|+..-+..|..++.++-.++.-+
T Consensus 406 ~~~~~~~l~~GiE~Li~~A~~~h~tce~~akaALRDL 442 (461)
T KOG4199|consen 406 AENRTILLANGIEKLIRTAKANHETCEAAAKAALRDL 442 (461)
T ss_pred hhccchHHhccHHHHHHHHHhcCccHHHHHHHHHHhc
Confidence 6666677777788888877777777666655555443
No 270
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=63.61 E-value=79 Score=31.99 Aligned_cols=130 Identities=16% Similarity=0.118 Sum_probs=72.4
Q ss_pred CCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhhcCC--ChHHHHHHHHHHHHHHHHH
Q 002658 74 QESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDS--DSGMKEACRDSIGSLSKLY 151 (896)
Q Consensus 74 pd~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrLkDp--Ds~VR~Ac~~aLG~LA~~l 151 (896)
++.+..+|.+|... ...+.+|..+..++..+-+...+.. -.++-.+|...+.++ ++.++-. .+++.+-.-.
T Consensus 2 ~~~l~~lL~~L~~~--~~~~~~r~~a~v~l~k~l~~~~~~~---~~~~~~~i~~~~~~~~~d~~i~~~--~~l~~lfp~~ 74 (157)
T PF11701_consen 2 SDELDTLLTSLDML--RQPEEVRSHALVILSKLLDAAREEF---KEKISDFIESLLDEGEMDSLIIAF--SALTALFPGP 74 (157)
T ss_dssp CCCCCHHHHHHHCT--TTSCCHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHCCHHCCHHHHHH--HHHHHHCTTT
T ss_pred hHHHHHHHHHhccc--CCCHhHHHHHHHHHHHHHHHhHHHH---HHHHHHHHHHHHccccchhHHHHH--HHHHHHhCCC
Confidence 45678888888742 2346789999999988855444443 344445555555443 3344322 2222221111
Q ss_pred hcccccCCch--hHhhhHHHHHHHHh--cCCHhHHHHHHHHHHHHHHh--cCCCCchhHHHHHHHHHHHhcC
Q 002658 152 LNGKEENNGT--VVGLFVKPLFEAMM--EQNKGVQSGAAMCMAKMVEC--ASDPPVVAFQKLCARICKLLSN 217 (896)
Q Consensus 152 i~~~~e~~~~--~~~~lL~pL~eaL~--Eqnk~VQ~gAasALAkIIE~--a~d~~~~yL~~LlPRL~kLLks 217 (896)
.+-+ .. .-..++.-++..+. .++..+|.+++-+|...|=+ ....+ ...-++.|.+++++
T Consensus 75 ~dv~----~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I---~~~~~~~L~~~~~~ 139 (157)
T PF11701_consen 75 PDVG----SELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFI---SKNYVSWLKELYKN 139 (157)
T ss_dssp HHHH----HHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCC---HHHCHHHHHHHTTT
T ss_pred HHHH----HHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHH---HHHHHHHHHHHHcc
Confidence 1100 00 01235556666666 67899999999999888843 23333 34455666777754
No 271
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=63.47 E-value=12 Score=28.12 Aligned_cols=28 Identities=43% Similarity=0.276 Sum_probs=23.7
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 002658 247 LLQSIHECLGSTDWATRKAAADALSALA 274 (896)
Q Consensus 247 lLp~L~e~LsddDW~lRKaA~EaLgsLA 274 (896)
.++.|.++|.+++..+++.|+.+|..|+
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 5677778888889999999999998876
No 272
>cd05134 RasGAP_RASA3 RASA3 (or GAP1_IP4BP) is a member of the GAP1 family and has been shown to specifically bind 1,3,4,5-tetrakisphosphate (IP4). Thus, RASA3 may function as an IP4 receptor. The members of GAP1 family are characterized by a conserved domain structure comprising N-terminal tandem C2 domains, a highly conserved central RasGAP domain, and a C-terminal pleckstrin-homology domain that is associated with a Bruton's tyrosine kinase motif. Purified RASA3 stimulates GAP activity on Ras with about a five-fold lower potency than p120RasGAP, but shows no GAP-stimulating activity at all against Rac or Rab3A.
Probab=62.44 E-value=1e+02 Score=35.09 Aligned_cols=57 Identities=18% Similarity=0.234 Sum_probs=43.4
Q ss_pred ccchhhHHHHHHHHHHhhcCCChHHHHH--HHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHh
Q 002658 112 ELTSTHVTKIISHIVKRLKDSDSGMKEA--CRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMM 175 (896)
Q Consensus 112 d~I~P~LpkIL~~IlrrLkDpDs~VR~A--c~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~ 175 (896)
..+.|+|..++..=+.+..|+....|.- |-.++..++... | .+++...|.|+++.+.
T Consensus 49 ~~~~~~l~~l~~~Ev~~~~~~~tLFRgNSlaTK~m~~y~k~~---G----~~YL~~tL~pvI~~i~ 107 (310)
T cd05134 49 GKIVPFISAIASAEVNRTQDPNTIFRGNSLTSKCIDETMKLA---G----MHYLQVTLKPIIDEIC 107 (310)
T ss_pred CcHHHHHHHHHHHHHHhCCCcchhhhcCcHHHHHHHHHHHHH---H----HHHHHHHHHHHHHHHH
Confidence 4457888888888888899999888864 444577777666 2 3778899999999884
No 273
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=62.36 E-value=65 Score=32.59 Aligned_cols=131 Identities=21% Similarity=0.190 Sum_probs=73.9
Q ss_pred HHHHHh--cCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHh----cc-ccCcc
Q 002658 170 LFEAMM--EQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQ----VG-AIAPQ 242 (896)
Q Consensus 170 L~eaL~--Eqnk~VQ~gAasALAkIIE~a~d~~~~yL~~LlPRL~kLLks~s~kaK~alL~aIgSLA~----vg-a~~~p 242 (896)
|+..|. .+.+.+...|..||+++.+..++. +-+.+-..+...+.......+-.++.++.++.. +| ..|
T Consensus 8 lL~~L~~~~~~~~~r~~a~v~l~k~l~~~~~~---~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~-- 82 (157)
T PF11701_consen 8 LLTSLDMLRQPEEVRSHALVILSKLLDAAREE---FKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELF-- 82 (157)
T ss_dssp HHHHHHCTTTSCCHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHC--
T ss_pred HHHHhcccCCCHhHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHH--
Confidence 344443 467889999999999998655433 222333333334444444444456666666643 23 223
Q ss_pred cHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHHHHhcchHHHhh-HHHHHHHHHhhh-cCCChh-hHHHH
Q 002658 243 SLEPLLQSIHECLG--STDWATRKAAADALSALALHSSNLVIDG-ATSTLTVLEACR-FDKIKP-VRDSM 307 (896)
Q Consensus 243 yle~lLp~L~e~Ls--ddDW~lRKaA~EaLgsLA~avGe~L~Py-~~~~I~~LE~~R-fDKvKp-VRDaA 307 (896)
.-+.+++.+.+.+. .++..+-.+++++|.+= ...+.-..| ...++..|+..- ..+.+. +|-.|
T Consensus 83 ~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aA--c~d~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A 150 (157)
T PF11701_consen 83 LSEGFLESLLPLASRKSKDRKVQKAALELLSAA--CIDKSCRTFISKNYVSWLKELYKNSKDDSEIRVLA 150 (157)
T ss_dssp CTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHH--TTSHHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHH
T ss_pred hhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHH--HccHHHHHHHHHHHHHHHHHHHccccchHHHHHHH
Confidence 22356666666666 56777888888887742 223444444 466777777544 455444 55544
No 274
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=62.07 E-value=2.8e+02 Score=31.55 Aligned_cols=136 Identities=12% Similarity=0.011 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHH-h-cCCCCchhHHHHHHHHHHHhcCC-chhhHHHHHHHHHHHHh-cc-ccCcccHHHHHHHHHHhhCC
Q 002658 183 SGAAMCMAKMVE-C-ASDPPVVAFQKLCARICKLLSNQ-NFMAKASLLPVVGSLSQ-VG-AIAPQSLEPLLQSIHECLGS 257 (896)
Q Consensus 183 ~gAasALAkIIE-~-a~d~~~~yL~~LlPRL~kLLks~-s~kaK~alL~aIgSLA~-vg-a~~~pyle~lLp~L~e~Lsd 257 (896)
.++..=|.++++ . ......|+=-.++-||.++|+-. ..-+..-+|++...++. .| ..+...+....|.|+.++..
T Consensus 29 is~L~kL~k~lq~~~~~~~~IP~k~~v~krLaqCL~P~LPsGVH~KaLevY~~IF~~ig~~~L~~dl~i~~~GLfpl~~~ 108 (307)
T PF04118_consen 29 ISFLGKLLKALQNSNNQFPYIPHKLQVSKRLAQCLNPALPSGVHQKALEVYEYIFERIGPDGLAQDLPIYSPGLFPLFSY 108 (307)
T ss_pred HHHHHHHHHHHhccCCCCceeCcHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCHHHHHhhcHHHHHHHHHHHHH
Confidence 344444555666 1 12222344446899999999853 22344456777777764 56 55677788889999999998
Q ss_pred CCHHHHHHHHHHHHHHHHhcchHHHhhHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHhc
Q 002658 258 TDWATRKAAADALSALALHSSNLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQLWKKIA 318 (896)
Q Consensus 258 dDW~lRKaA~EaLgsLA~avGe~L~Py~~~~I~~LE~~RfDKvKpVRDaA~eALe~WK~la 318 (896)
..-++|..-++.+-..-.-+|..+.|.+..+|-.+....-|...++-+-+..-++.++...
T Consensus 109 asi~Vkp~lL~i~e~~~lpL~~~L~p~l~~li~slLpGLede~sE~~~~~~~ll~~l~~~v 169 (307)
T PF04118_consen 109 ASIQVKPQLLDIYEKYYLPLGPALRPCLKGLILSLLPGLEDEGSEFFDRTLKLLDKLKEAV 169 (307)
T ss_pred HHHhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHhccccccCCchHHHHHHHHHHHHHHhc
Confidence 8899999999999988888889999999999888877777777767777666676666544
No 275
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=62.06 E-value=64 Score=33.84 Aligned_cols=130 Identities=11% Similarity=0.083 Sum_probs=71.6
Q ss_pred HHHHHHHHHhhcCCCh--HHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhc
Q 002658 119 TKIISHIVKRLKDSDS--GMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECA 196 (896)
Q Consensus 119 pkIL~~IlrrLkDpDs--~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~a 196 (896)
..|.|.++.+|+-... ..-..-+.++..++..++.. +...|.++..-++.. ..+.+.---..+.||..-..
T Consensus 2 ~eikplLIsCL~~q~~k~s~~KiL~~iVs~Va~~v~~~----~~~~W~eL~d~Ils~-~~~e~~kA~~IF~~L~~~l~-- 74 (174)
T PF04510_consen 2 REIKPLLISCLTMQETKESDFKILRRIVSHVAYEVFDL----QEGGWDELSDCILSL-SENEPVKAFHIFICLPMPLY-- 74 (174)
T ss_pred cchHHHHHHHHHhhcccHhHHHHHHHHHHHHHHHHHhc----CCCCchhHHHHHHHh-hccchHHHHHHHHhCCchhh--
Confidence 3567777778766543 23345555566666666432 224588877444332 23333222346677773332
Q ss_pred CCCCchhHHHHHHHHHHHhcCCc-hhhHHHHHH---HHHHHHhc-c-ccCcccHHHHHHHHHHhh
Q 002658 197 SDPPVVAFQKLCARICKLLSNQN-FMAKASLLP---VVGSLSQV-G-AIAPQSLEPLLQSIHECL 255 (896)
Q Consensus 197 ~d~~~~yL~~LlPRL~kLLks~s-~kaK~alL~---aIgSLA~v-g-a~~~pyle~lLp~L~e~L 255 (896)
++-+.++++.|+|.+.+.|.+|. +....=.|. ++...+.. . ..-..++..+++.+.+.+
T Consensus 75 ~efl~~~~~~L~~~~~~~L~~p~~~d~~~W~LAl~~a~~~~Iql~e~~~~~~~vk~L~~~mv~Sv 139 (174)
T PF04510_consen 75 GEFLIPFMENLLPEISKVLLPPEEVDVEDWVLALTGAVCMAIQLLESSMRVDLVKELLPKMVKSV 139 (174)
T ss_pred hhHHHHHHHHHHHHHHHHcCCchhccHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence 45566899999999999999883 444432333 33333331 1 111355666666655543
No 276
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=61.58 E-value=63 Score=31.95 Aligned_cols=90 Identities=18% Similarity=0.270 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhh------c
Q 002658 57 THQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRL------K 130 (896)
Q Consensus 57 T~k~Aa~eLD~La~~L~pd~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrL------k 130 (896)
|--..+++|-++... ++..+.-++.+|...+++..+.|+--|+++|..+++.....+.-.+.+=.. +++.+ -
T Consensus 17 ~pgy~~~Eia~~t~~-s~~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~-~Ik~~~~f~g~~ 94 (122)
T cd03572 17 TPGYLYEEIAKLTRK-SVGSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSA-QIRECANYKGPP 94 (122)
T ss_pred CchHHHHHHHHHHHc-CHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHH-HHHHHHHcCCCC
Confidence 445566777777764 455688899999999988889999999999999988766544333333222 22222 2
Q ss_pred CC------ChHHHHHHHHHHHHHH
Q 002658 131 DS------DSGMKEACRDSIGSLS 148 (896)
Q Consensus 131 Dp------Ds~VR~Ac~~aLG~LA 148 (896)
|| ...||.+|-+++..|.
T Consensus 95 Dp~~Gd~~~~~VR~~A~El~~~if 118 (122)
T cd03572 95 DPLKGDSLNEKVREEAQELIKAIF 118 (122)
T ss_pred CcccCcchhHHHHHHHHHHHHHHh
Confidence 22 2588998888887664
No 277
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=61.41 E-value=1.6e+02 Score=30.61 Aligned_cols=132 Identities=17% Similarity=0.218 Sum_probs=68.1
Q ss_pred HhhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCC---chh--------------------HHHHHHHHHHHhcCCc
Q 002658 163 VGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPP---VVA--------------------FQKLCARICKLLSNQN 219 (896)
Q Consensus 163 ~~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~a~d~~---~~y--------------------L~~LlPRL~kLLks~s 219 (896)
...++..|+....|.--.|-..|+.||..++... ... .|+ -....|+++++|.-+.
T Consensus 5 ~~~~~~~llrqa~EKiDrvR~~A~~~l~~ll~~~-~~~~~~ip~~~~L~~i~~~~~~~~~~w~~~~~~F~~l~~LL~~~~ 83 (193)
T PF12612_consen 5 VQQIIGGLLRQAAEKIDRVREVAGKCLQRLLHSQ-DPTIPHIPHREELQDIFPSESEASLNWSSSSEYFPRLVKLLDLPE 83 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CccccCCCcHHHHHHHcccccccccccCCHHHHHHHHHHHhccHH
Confidence 3344444444445555677777888888888332 110 011 2235577777777665
Q ss_pred hhhHHHHHHHHHHHHhccccCcccHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHHHHhc-c--hHHHhhHHHHHHHHHh
Q 002658 220 FMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLG--STDWATRKAAADALSALALHS-S--NLVIDGATSTLTVLEA 294 (896)
Q Consensus 220 ~kaK~alL~aIgSLA~vga~~~pyle~lLp~L~e~Ls--ddDW~lRKaA~EaLgsLA~av-G--e~L~Py~~~~I~~LE~ 294 (896)
|. ...+.+.+. .+|+....-+......|++++. +.+.......+.+|..+...- + -.+.|.+.-+-..|+.
T Consensus 84 y~-~~ll~Glv~---S~G~~tesl~~~s~~AL~~~~~~~~~~~~~~~~v~~~l~~il~~~~~~dRv~vP~l~tl~~Ll~~ 159 (193)
T PF12612_consen 84 YR-YSLLSGLVV---SAGGLTESLVRASSAALLSYLRELSDSPEELEQVLSDLLSILKENLRNDRVVVPLLKTLDFLLSS 159 (193)
T ss_pred HH-HHHHhHHHh---cCCCCchhHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCCCCCeeecHHHHHHHHHhC
Confidence 54 223333333 3443333344445555666654 445555555666666655543 2 3344555555445555
Q ss_pred hhcCC
Q 002658 295 CRFDK 299 (896)
Q Consensus 295 ~RfDK 299 (896)
.-|+.
T Consensus 160 ~~~~~ 164 (193)
T PF12612_consen 160 GVFDS 164 (193)
T ss_pred cchhc
Confidence 45554
No 278
>KOG2141 consensus Protein involved in high osmolarity signaling pathway [Signal transduction mechanisms]
Probab=60.97 E-value=4.4e+02 Score=33.43 Aligned_cols=53 Identities=21% Similarity=0.236 Sum_probs=35.7
Q ss_pred chhhhHhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 002658 31 SLSSHLAMVEMKQKILTSLSKLADRDTHQIAIEDLEKTIQTLSQESLPMLLNCL 84 (896)
Q Consensus 31 ~~s~~~~~~~Lk~rll~~L~KLsDRDT~k~Aa~eLD~La~~L~pd~Lp~fLs~L 84 (896)
+-+..+.+.+|+++|..+||||+|-....++ ++|..+-...+-..+.-.|..+
T Consensus 309 ~~~~sE~l~rl~rkv~g~LNKLSdaNi~~I~-~~i~~Ly~~~sr~~v~~sLtk~ 361 (822)
T KOG2141|consen 309 TSSESEQLQRLRRKVNGSLNKLSDANIIKII-AGIAELYMNNSRYDVTSSLTKL 361 (822)
T ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcchhhHHHHHHHH
Confidence 4455678899999999999999988665554 4566665554433344444433
No 279
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=60.82 E-value=88 Score=33.21 Aligned_cols=132 Identities=12% Similarity=0.161 Sum_probs=82.2
Q ss_pred HhcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHh-cc-ccC----c------
Q 002658 174 MMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQ-VG-AIA----P------ 241 (896)
Q Consensus 174 L~Eqnk~VQ~gAasALAkIIE~a~d~~~~yL~~LlPRL~kLLks~s~kaK~alL~aIgSLA~-vg-a~~----~------ 241 (896)
|.-+...+-.-....++++.+..+....+++..++..|.++-+++++..|..+=.|||+.+. +| +.+ +
T Consensus 9 L~~~y~~aw~~vl~v~s~lf~~lg~~~~~~l~~~L~~l~~lr~~~~f~~~~~~e~~lgaAi~amGpe~vL~~lPLnl~~~ 88 (198)
T PF08161_consen 9 LSYRYQHAWPEVLNVLSALFEKLGERSSPLLKPILKTLGDLRESEDFSFRKELEQVLGAAIRAMGPEQVLSILPLNLDNA 88 (198)
T ss_pred hCcchHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHCCHHHHHHHCCCCccCC
Confidence 33345556666777888888887766678899999999999999999999988889998864 45 211 1
Q ss_pred ----ccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcchHHHhhHHHHHHHHHhhhc-----CCChhhHHHHHHHHH
Q 002658 242 ----QSLEPLLQSIHECLGSTDWATRKAAADALSALALHSSNLVIDGATSTLTVLEACRF-----DKIKPVRDSMNEALQ 312 (896)
Q Consensus 242 ----pyle~lLp~L~e~LsddDW~lRKaA~EaLgsLA~avGe~L~Py~~~~I~~LE~~Rf-----DKvKpVRDaA~eALe 312 (896)
+.=.|++|.|.+....... ..|..|+-++++.+...-. .+.-..|..-.-..+
T Consensus 89 ~~~~~~raWLLPlLr~~i~~~~L------------------~fF~~~~lPla~~~~~~~~~~~~~~~~~~ak~~~~l~~Q 150 (198)
T PF08161_consen 89 DDSQPGRAWLLPLLRDHIRNASL------------------SFFVEEFLPLARRLRQKAQKASEAGKSVEAKIYETLVQQ 150 (198)
T ss_pred CcCCcccchhHHHHHHhccCCCh------------------HHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHH
Confidence 1122566666665544221 3344444444444432211 233334555455779
Q ss_pred HHHHhccCCCC
Q 002658 313 LWKKIAGKVDV 323 (896)
Q Consensus 313 ~WK~la~~~d~ 323 (896)
+|.-+|+=-+.
T Consensus 151 lWslLP~FC~~ 161 (198)
T PF08161_consen 151 LWSLLPGFCNY 161 (198)
T ss_pred HHHHhHHhcCC
Confidence 99999965333
No 280
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=60.68 E-value=6e+02 Score=34.88 Aligned_cols=208 Identities=13% Similarity=0.123 Sum_probs=109.0
Q ss_pred CCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhhcC-CChHHHHHHHHHHHHHHHHHhc
Q 002658 75 ESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKD-SDSGMKEACRDSIGSLSKLYLN 153 (896)
Q Consensus 75 d~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrLkD-pDs~VR~Ac~~aLG~LA~~li~ 153 (896)
+-|+.||.....-+.+.++.++.-+..++..+=..+..+ +-..|+..|+..+.. .++.| ++|.+++-.|+....+
T Consensus 431 ~~f~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~fds~---~qqeVv~~Lvthi~sg~~~ev-~~aL~vL~~L~~~~~~ 506 (1426)
T PF14631_consen 431 DYFPSILSLAQSLLRSKEPSVREFGSHLYKYLFKEFDSY---CQQEVVGALVTHIGSGNSQEV-DAALDVLCELAEKNPS 506 (1426)
T ss_dssp TSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS-HH---HHHHHHHHHHHHHHH--HHHH-HHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhccch---hHHHHHHHHHHHHcCCcHHHH-HHHHHHHHHHHhccHH
Confidence 357777777776678889999999999998888876432 234556666555533 44555 6888888888875532
Q ss_pred ccccCCchhHhhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHH
Q 002658 154 GKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSL 233 (896)
Q Consensus 154 ~~~e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~a~d~~~~yL~~LlPRL~kLLks~s~kaK~alL~aIgSL 233 (896)
. -..+..++..+++.|..=+..----.+.-|..+.=.........-+.|---+-|.|.+++.+.|- ++.||++
T Consensus 507 ~-----l~~fa~~l~giLD~l~~Ls~~qiR~lf~il~~La~~~~~~~s~i~del~ivIRKQLss~~~~~K~--~GIIGav 579 (1426)
T PF14631_consen 507 E-----LQPFATFLKGILDYLDNLSLQQIRKLFDILCTLAFSDSSSSSSIQDELHIVIRKQLSSSNPKYKR--IGIIGAV 579 (1426)
T ss_dssp H-----HHHTHHHHHGGGGGGGG--HHHHHHHHHHHHHHHHHHSS---HHHHHHHHHHHHHHT-SSHHHHH--HHHHHHH
T ss_pred H-----HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCcccchhhHHHHHHHHHHhhcCCcHHHHH--HhHHHHH
Confidence 2 13356778888888853222211122333333332222222234456777777888988877664 3444444
Q ss_pred Hhcc---ccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcc---hHHHhhHHHHHHHHHhhhcC
Q 002658 234 SQVG---AIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSS---NLVIDGATSTLTVLEACRFD 298 (896)
Q Consensus 234 A~vg---a~~~pyle~lLp~L~e~LsddDW~lRKaA~EaLgsLA~avG---e~L~Py~~~~I~~LE~~RfD 298 (896)
..++ +... -.+... .+. .+-.-..++.+...|..+-...+ +.++=|.+.+-+++....+|
T Consensus 580 ~~i~~la~~~~-~~~~~~---~~~-~~l~~~~~~q~~~Ll~l~~ss~~~sp~~~ALfYDELA~li~~~~l~ 645 (1426)
T PF14631_consen 580 MMIKHLAAKNS-ESDSSS---SER-SNLSDEQCKQATSLLELVQSSSEQSPEALALFYDELANLIQSRKLD 645 (1426)
T ss_dssp HHHHHTT-----------------------HHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHS---
T ss_pred HHHHHHHHHhc-cCCccc---ccc-ccCCHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCC
Confidence 3222 1100 000000 000 11112345555566655555544 56777778887777766655
No 281
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=60.54 E-value=1.6e+02 Score=35.38 Aligned_cols=178 Identities=13% Similarity=0.071 Sum_probs=94.6
Q ss_pred ChhhHHHHHHHHHHHHHHhcccc-hhhHHHHHH-HHHHhhcCCChHHHHHHHHHHHHHHHHHhcc-cccCCchhHhhhHH
Q 002658 92 KPAVKKESVRLLALVCELHSELT-STHVTKIIS-HIVKRLKDSDSGMKEACRDSIGSLSKLYLNG-KEENNGTVVGLFVK 168 (896)
Q Consensus 92 k~~vRKeAIllLG~IAeg~~d~I-~P~LpkIL~-~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~-~~e~~~~~~~~lL~ 168 (896)
+|..=++|-++||+++-.-+... .-.++|=++ .+...-...|-.+|-.+|-++..|+..---+ ... ... --.++.
T Consensus 277 ~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClAV~vlat~KE~E~~Vr-kS~-TlaLVE 354 (832)
T KOG3678|consen 277 DPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLAVAVLATNKEVEREVR-KSG-TLALVE 354 (832)
T ss_pred CHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHHhhhhhhhhhhHHHh-hcc-chhhhh
Confidence 47777889999999876433333 223333333 3333334457889999999988888654101 000 001 123566
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchhhHH--HHHHHHHHHHhccccCcccHH-
Q 002658 169 PLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKA--SLLPVVGSLSQVGAIAPQSLE- 245 (896)
Q Consensus 169 pL~eaL~Eqnk~VQ~gAasALAkIIE~a~d~~~~yL~~LlPRL~kLLks~s~kaK~--alL~aIgSLA~vga~~~pyle- 245 (896)
||+..++ +...+. +..+--..--+.=+.||+++|++....++. +-+-|.-+.+...+.-...|.
T Consensus 355 Plva~~D-P~~FAR------------D~hd~aQG~~~d~LqRLvPlLdS~R~EAq~i~AF~l~~EAaIKs~Q~K~kVFse 421 (832)
T KOG3678|consen 355 PLVASLD-PGRFAR------------DAHDYAQGRGPDDLQRLVPLLDSNRLEAQCIGAFYLCAEAAIKSLQGKTKVFSE 421 (832)
T ss_pred hhhhccC-cchhhh------------hhhhhhccCChHHHHHhhhhhhcchhhhhhhHHHHHHHHHHHHHhccchhHHHH
Confidence 6666552 111111 111100011123456677777755444331 111111111211111112222
Q ss_pred -HHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcchHHHhh
Q 002658 246 -PLLQSIHECLGSTDWATRKAAADALSALALHSSNLVIDG 284 (896)
Q Consensus 246 -~lLp~L~e~LsddDW~lRKaA~EaLgsLA~avGe~L~Py 284 (896)
..|+.|.+..++.|-..-|-|-++|..|...++-.+.|-
T Consensus 422 IGAIQaLKevaSS~d~vaakfAseALtviGEEVP~~l~~q 461 (832)
T KOG3678|consen 422 IGAIQALKEVASSPDEVAAKFASEALTVIGEEVPYKLAQQ 461 (832)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHhccccChhhhcc
Confidence 357888899999888888999999999999888655543
No 282
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=59.77 E-value=12 Score=28.07 Aligned_cols=28 Identities=21% Similarity=0.267 Sum_probs=24.1
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHHH
Q 002658 121 IISHIVKRLKDSDSGMKEACRDSIGSLS 148 (896)
Q Consensus 121 IL~~IlrrLkDpDs~VR~Ac~~aLG~LA 148 (896)
+++.+++.|+.+++.|+..++++|+.|+
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 4667777888889999999999999886
No 283
>cd05135 RasGAP_RASAL Ras GTPase activating-like protein (RASAL) or RASAL1 is a member of the GAP1 family, and a Ca2+ sensor responding in-phase to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. It contains a conserved domain structure comprising N-terminal tandem C2 domains, a highly conserved central RasGAP domain, and a C-terminal pleckstrin-homology domain that is associated with a Bruton's tyrosine kinase motif. RASAL, like Ca2+ -promoted Ras inactivator (CAPRI, or RASAL4), is a cytosolic protein that undergoes a rapid translocation to the plasma membrane in response to receptor-mediated elevation in the concentration of intracellular free Ca2+, a translocation that activates its ability to function as a RasGAP. However, unlike RASAL4, RASAL undergoes an oscillatory translocation to the plasma membrane that occurs in synchrony with repetitive Ca2+ spikes.
Probab=59.58 E-value=3.2e+02 Score=31.39 Aligned_cols=71 Identities=11% Similarity=0.089 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhhcCCChHHHHHHHH--HHHHHHHHHhcccccCCchhHhhhHHHHHHH
Q 002658 96 KKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRD--SIGSLSKLYLNGKEENNGTVVGLFVKPLFEA 173 (896)
Q Consensus 96 RKeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrLkDpDs~VR~Ac~~--aLG~LA~~li~~~~e~~~~~~~~lL~pL~ea 173 (896)
+.+....|-.+-.+++ .+.+.|..++..=+....|+...+|.-+.+ ++..+.... +..++..+|.|++..
T Consensus 38 ~~~~a~~LV~~f~~~~-~~~~ll~~li~~Ev~~~~~~~tlfR~NSlaTK~m~~y~k~~-------G~~YL~~~L~p~I~~ 109 (333)
T cd05135 38 RQDVAMKLVKIFLGQG-LAVPFLDYLNTREVQRTTDPNTLFRSNSLASKSMEQFMKVV-------GMPHLHEPLLPEISK 109 (333)
T ss_pred HHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHhCCCHhHHhhcCcHHHHHHHHHHHHH-------hHHHHHHHHHHHHHH
Confidence 3444444444444444 556777777777777788898899876655 466666654 237788888888887
Q ss_pred H
Q 002658 174 M 174 (896)
Q Consensus 174 L 174 (896)
+
T Consensus 110 I 110 (333)
T cd05135 110 P 110 (333)
T ss_pred H
Confidence 7
No 284
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=58.85 E-value=49 Score=31.63 Aligned_cols=74 Identities=16% Similarity=0.133 Sum_probs=55.3
Q ss_pred hhHHHHHHHHHHHhc-CCchhhHHHHHHHHHHHHhccccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhc
Q 002658 202 VAFQKLCARICKLLS-NQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHS 277 (896)
Q Consensus 202 ~yL~~LlPRL~kLLk-s~s~kaK~alL~aIgSLA~vga~~~pyle~lLp~L~e~LsddDW~lRKaA~EaLgsLA~av 277 (896)
.++..|+|-+.+.|+ +.....+.++|-.++.++........-++.+|..+........- .+.++-||..|...-
T Consensus 2 ~~l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~~~~l~~l~~~i~~~~~~~~~--~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 2 DILPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLSDEVLNALMESILKNWTQETV--QRQALICLIVLCQSQ 76 (121)
T ss_pred cHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHcc
Confidence 478899999999999 66777888999989888754444566677777777776665443 567777888877665
No 285
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=57.76 E-value=2.8e+02 Score=30.08 Aligned_cols=182 Identities=15% Similarity=0.158 Sum_probs=99.8
Q ss_pred CCCChhhHHHHHHHHHHHHHHhcccc---------hhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCC
Q 002658 89 NDPKPAVKKESVRLLALVCELHSELT---------STHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENN 159 (896)
Q Consensus 89 ss~k~~vRKeAIllLG~IAeg~~d~I---------~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~ 159 (896)
++.++.+-|.+|.+++.+=...-+.+ =..+..|...|+..+.+..+.||-+|..-+-.+.-..........
T Consensus 3 ~d~d~~v~K~~I~~~~~iy~~~~~~i~~~~~~~~~W~~~~~lK~~Il~~~~~~~~gvk~~~iKFle~vIl~qs~~~~~~~ 82 (239)
T PF11935_consen 3 NDEDPAVVKRAIQCSTSIYPLVFRWICVNPSDEQLWESMNELKDRILSLWDSENPGVKLAAIKFLERVILVQSPGSSDSP 82 (239)
T ss_dssp T-SSHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHGGGSSSHHHHHHHHHHHHHHHHHTS---TTS-
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCCCCc
Confidence 35577888888888877765544333 225677888999999999999999999888887777643211000
Q ss_pred -----chhHhhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHH
Q 002658 160 -----GTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLS 234 (896)
Q Consensus 160 -----~~~~~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~a~d~~~~yL~~LlPRL~kLLks~s~kaK~alL~aIgSLA 234 (896)
...+.. ..+-.+.+-.. ...+.++ =..|+.+|+.+|.+++. .-..+..+|++++
T Consensus 83 ~~~~~~~d~SL------~~vp~~Hp~l~------~~~Le~E--------a~~lL~~Ll~~l~~~~i-~~~~~~a~insL~ 141 (239)
T PF11935_consen 83 PRRGSPNDFSL------SSVPPNHPLLN------PQQLEAE--------ANGLLDRLLDVLQSPHI-SSPLLTAIINSLS 141 (239)
T ss_dssp --GGGTTS--G------GGS-TT-SSS-------HHHHHHH--------HHHHHHHHHHHHC-TT---HHHHHHHHHHHH
T ss_pred cccccccCCCH------HHcCCCCCcCC------HHHHHHH--------HHHHHHHHHHHHhhccc-chHHHHHHHHHHH
Confidence 000000 00000000000 0011111 12477788888887762 2234455566654
Q ss_pred hccccCcccHHHHHHHHHHhhCCC--------C----HHHHHHHHHHHHHHHHhcchHHHhhHHHHHHHHH
Q 002658 235 QVGAIAPQSLEPLLQSIHECLGST--------D----WATRKAAADALSALALHSSNLVIDGATSTLTVLE 293 (896)
Q Consensus 235 ~vga~~~pyle~lLp~L~e~Lsdd--------D----W~lRKaA~EaLgsLA~avGe~L~Py~~~~I~~LE 293 (896)
.....-+.|+..++++|..+-.+. . ..+||..=-.|..+...-. ..||.+++.++|+
T Consensus 142 ~Iak~RP~~~~~Il~~ll~~~~~~~~~~~~~~~~~~v~sv~k~lk~~l~~llk~~~--~~~~~~~i~~~L~ 210 (239)
T PF11935_consen 142 NIAKQRPQFMSRILPALLSFNPNLSPMQPPTLSKLQVKSVEKTLKIFLLHLLKHPA--SSPFQGRITQALT 210 (239)
T ss_dssp HHHHHSGGGHHHHHHHHHHHHHS------TTCSHHHHHHHHHHHHHHHHHHHTSGG--GGGGHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHhcCccccccCCccchHHHHHHHHHHHHHHHHHHHCCCC--chhhHHHHHHHHH
Confidence 433356778899999999874432 1 2234443344444444333 2288888888887
No 286
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=57.72 E-value=3e+02 Score=30.45 Aligned_cols=162 Identities=22% Similarity=0.281 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHhcCCCCC-HHHHHHHHhhhc-------CCCChhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhhc
Q 002658 59 QIAIEDLEKTIQTLSQES-LPMLLNCLYESS-------NDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLK 130 (896)
Q Consensus 59 k~Aa~eLD~La~~L~pd~-Lp~fLs~L~es~-------ss~k~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrLk 130 (896)
..--+.|+..+. .++. +|.++..|.+.. .+..+..-=.|+.+|+..-+ . +-++.|++.++
T Consensus 16 ~~P~~al~~A~~--~~e~i~P~Ll~~Le~a~~~~~e~~~~~~~~~~~~a~~LLaq~re---~-------~A~~~li~l~~ 83 (249)
T PF06685_consen 16 EFPREALEAAIE--QREEITPELLKILEDAIERANELLDDEEYNLHFYALYLLAQFRE---E-------RALPPLIRLFS 83 (249)
T ss_pred cCcHHHHHHHHH--CHHHhhHHHHHHHHHHHHhHHHhccCcchHHHHHHHHHHHHHhh---h-------hhHHHHHHHHc
Confidence 344555666665 3333 666666666543 22233333345555544432 1 22445666666
Q ss_pred CCChHHHHHHHH----HHHHHHHHHhcccccCCchhHhhhHHHHHHHHhcC--CHhHHHHHHHHHHHHHHhcCC---CCc
Q 002658 131 DSDSGMKEACRD----SIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQ--NKGVQSGAAMCMAKMVECASD---PPV 201 (896)
Q Consensus 131 DpDs~VR~Ac~~----aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~Eq--nk~VQ~gAasALAkIIE~a~d---~~~ 201 (896)
-++--+-....+ .++++...+.+ .=+.+|.+.+.++ +.-|..+|+.||..++..-+. ...
T Consensus 84 ~~~~~~~~l~GD~~tE~l~~ilasv~~-----------G~~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~~Re~vi 152 (249)
T PF06685_consen 84 QDDDFLEDLFGDFITEDLPRILASVGD-----------GDIEPLKELIEDPDADEYVRMAAISALAFLVHEGPISREEVI 152 (249)
T ss_pred CCcchHHHHHcchhHhHHHHHHHHHhC-----------CCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHH
Confidence 555444444444 33333333311 1234555666443 677999999999999986432 223
Q ss_pred hhHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHhccccCcccHHHHHHHHHHhhC
Q 002658 202 VAFQKLCARICKLLSN-QNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLG 256 (896)
Q Consensus 202 ~yL~~LlPRL~kLLks-~s~kaK~alL~aIgSLA~vga~~~pyle~lLp~L~e~Ls 256 (896)
.|+..++... ++. +.+ +.++++. ..+--|...++|.+.+...
T Consensus 153 ~~f~~ll~~~---l~~~~~~--------~~~~Lv~--~~~dL~~~EL~~~I~~~f~ 195 (249)
T PF06685_consen 153 QYFRELLNYF---LERNPSF--------LWGSLVA--DICDLYPEELLPEIRKAFE 195 (249)
T ss_pred HHHHHHHHHH---hccCchH--------HHHHHHH--HHHhcCHHHhHHHHHHHHH
Confidence 4454444332 232 233 3344432 2333466677777766543
No 287
>KOG4541 consensus Nuclear transport receptor exportin 4 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=57.08 E-value=1.4e+02 Score=36.46 Aligned_cols=135 Identities=18% Similarity=0.234 Sum_probs=84.9
Q ss_pred hhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhhcC-----CChHHHHHHHHHHHHHHHHHhcc-cccCCchhHhhh
Q 002658 93 PAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKD-----SDSGMKEACRDSIGSLSKLYLNG-KEENNGTVVGLF 166 (896)
Q Consensus 93 ~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrLkD-----pDs~VR~Ac~~aLG~LA~~li~~-~~e~~~~~~~~l 166 (896)
|.+--.-+.++-.+|+..++.++.|=.+++..+..++.= ..+.+-+.|-+++--+++.+-+. +.+.-.=...+|
T Consensus 571 P~lc~~~~~lIty~ce~~pe~la~~~~~l~~sl~qc~~LGMTge~~s~~l~~~~e~v~hfgspankgrcTqnlafL~~ef 650 (748)
T KOG4541|consen 571 PKLCFDDVDLITYMCERAPEALASYHYKLKNSLNQCSGLGMTGESHSAGLHTDPEGVFHFGSPANKGRCTQNLAFLSREF 650 (748)
T ss_pred hHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHhhccCCccccchHhhccChHhhhccccccccccccccHHHHHHHH
Confidence 334445667788899999999999888999988855433 44455555666666555554321 111011124469
Q ss_pred HHHHHHHHh--cCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHH
Q 002658 167 VKPLFEAMM--EQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSL 233 (896)
Q Consensus 167 L~pL~eaL~--Eqnk~VQ~gAasALAkIIE~a~d~~~~yL~~LlPRL~kLLks~s~kaK~alL~aIgSL 233 (896)
|+.+|+.|. +.+...-.+||.||..+|-..+.. .+.++..|+.-=.+|.++- -+-++..-+
T Consensus 651 L~tvf~~ll~~~~~t~l~s~a~~Aly~LI~~e~~~----y~elvneL~skq~np~~~q--rLa~Af~~L 713 (748)
T KOG4541|consen 651 LRTVFHFLLFEDYSTDLVSTAADALYPLILCEPNL----YQELVNELISKQANPNFKQ--RLANAFQVL 713 (748)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHHHHHhCHHH----HHHHHHHHHhhccChHHHH--HHHHHHHHH
Confidence 999999993 457788889999999999765444 4455555554444555543 333444443
No 288
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=56.67 E-value=1e+02 Score=32.16 Aligned_cols=136 Identities=11% Similarity=0.079 Sum_probs=76.2
Q ss_pred hhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhhcCCC--hHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHH
Q 002658 93 PAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSD--SGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPL 170 (896)
Q Consensus 93 ~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrLkDpD--s~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL 170 (896)
-.+|..|..+|..+. .+...-.|++|.. +.+...+..+. +..-....++.-+++.-+ .- ..+...++.-|
T Consensus 21 DrvR~~A~~~l~~ll-~~~~~~~~~ip~~-~~L~~i~~~~~~~~~~w~~~~~~F~~l~~LL-~~-----~~y~~~ll~Gl 92 (193)
T PF12612_consen 21 DRVREVAGKCLQRLL-HSQDPTIPHIPHR-EELQDIFPSESEASLNWSSSSEYFPRLVKLL-DL-----PEYRYSLLSGL 92 (193)
T ss_pred HHHHHHHHHHHHHHh-cCCCccccCCCcH-HHHHHHcccccccccccCCHHHHHHHHHHHh-cc-----HHHHHHHHhHH
Confidence 467888888888877 3333322333321 22333332222 112333455566666444 21 13344445555
Q ss_pred HHHHhcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCC--chhhHHHHHHHHHHHHhcc
Q 002658 171 FEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQ--NFMAKASLLPVVGSLSQVG 237 (896)
Q Consensus 171 ~eaL~Eqnk~VQ~gAasALAkIIE~a~d~~~~yL~~LlPRL~kLLks~--s~kaK~alL~aIgSLA~vg 237 (896)
+-.++.-+..+...|..||...+... .....-+..++..|+.+|++. ..++-..++..+.-+...|
T Consensus 93 v~S~G~~tesl~~~s~~AL~~~~~~~-~~~~~~~~~v~~~l~~il~~~~~~dRv~vP~l~tl~~Ll~~~ 160 (193)
T PF12612_consen 93 VVSAGGLTESLVRASSAALLSYLREL-SDSPEELEQVLSDLLSILKENLRNDRVVVPLLKTLDFLLSSG 160 (193)
T ss_pred HhcCCCCchhHHHHHHHHHHHHHHHh-hcCHHHHHHHHHHHHHHHHHhCCCCCeeecHHHHHHHHHhCc
Confidence 55556778889989999999999754 222345777888888888753 2222235666676666544
No 289
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=56.54 E-value=1.4e+02 Score=40.45 Aligned_cols=155 Identities=16% Similarity=0.112 Sum_probs=94.5
Q ss_pred HHHHHHHHhcccchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhcCCHhH
Q 002658 102 LLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGV 181 (896)
Q Consensus 102 lLG~IAeg~~d~I~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~Eqnk~V 181 (896)
+|..+..+|...+.+|++.|+...-..|+.+++.|++..+..+..+.... +. -.-.+++..|+..+.+.+..-
T Consensus 417 ll~~~f~~~~~vL~~~f~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~f-ds------~~qqeVv~~Lvthi~sg~~~e 489 (1426)
T PF14631_consen 417 LLDQTFKGHSEVLKDYFPSILSLAQSLLRSKEPSVREFGSHLYKYLFKEF-DS------YCQQEVVGALVTHIGSGNSQE 489 (1426)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS--H------HHHHHHHHHHHHHHHH--HHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhc-cc------hhHHHHHHHHHHHHcCCcHHH
Confidence 55666677778889999999999999999999999999988887777665 11 124678888888887666655
Q ss_pred HHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCC-chhhHHHHHHHHHHHHh-ccccCcccHHHHHHHHHHhhCCCC
Q 002658 182 QSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQ-NFMAKASLLPVVGSLSQ-VGAIAPQSLEPLLQSIHECLGSTD 259 (896)
Q Consensus 182 Q~gAasALAkIIE~a~d~~~~yL~~LlPRL~kLLks~-s~kaK~alL~aIgSLA~-vga~~~pyle~lLp~L~e~LsddD 259 (896)
-.+|...|..+++..+..+.+|-. ++-.++..+.+- ..++| -++..+..++- ........-+.+.=.+...|++.+
T Consensus 490 v~~aL~vL~~L~~~~~~~l~~fa~-~l~giLD~l~~Ls~~qiR-~lf~il~~La~~~~~~~s~i~del~ivIRKQLss~~ 567 (1426)
T PF14631_consen 490 VDAALDVLCELAEKNPSELQPFAT-FLKGILDYLDNLSLQQIR-KLFDILCTLAFSDSSSSSSIQDELHIVIRKQLSSSN 567 (1426)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHTHH-HHHGGGGGGGG--HHHHH-HHHHHHHHHHHHHSS---HHHHHHHHHHHHHHT-SS
T ss_pred HHHHHHHHHHHHhccHHHHHHHHH-HHHHHHHHHhcCCHHHHH-HHHHHHHHHhcCCcccchhhHHHHHHHHHHhhcCCc
Confidence 567888888888754333323211 122222233332 22344 34666776652 122222233444445666788887
Q ss_pred HHHHHH
Q 002658 260 WATRKA 265 (896)
Q Consensus 260 W~lRKa 265 (896)
...++.
T Consensus 568 ~~~K~~ 573 (1426)
T PF14631_consen 568 PKYKRI 573 (1426)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776654
No 290
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=55.96 E-value=1.4e+02 Score=29.58 Aligned_cols=71 Identities=13% Similarity=0.097 Sum_probs=52.7
Q ss_pred cHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcchHHHhhHHHH---HHHHHhhhc--CC------ChhhHHHHHHHH
Q 002658 243 SLEPLLQSIHECLGSTDWATRKAAADALSALALHSSNLVIDGATST---LTVLEACRF--DK------IKPVRDSMNEAL 311 (896)
Q Consensus 243 yle~lLp~L~e~LsddDW~lRKaA~EaLgsLA~avGe~L~Py~~~~---I~~LE~~Rf--DK------vKpVRDaA~eAL 311 (896)
-+..++-.|...|.+.+.-++.-|+.+|-.++...++.|.-.+..- |+-+.+.+. |. -+.||+.|.|++
T Consensus 35 ~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~ 114 (122)
T cd03572 35 SCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELI 114 (122)
T ss_pred HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHH
Confidence 4567888888999999999999999999999998887777776444 444444444 21 144999988877
Q ss_pred HH
Q 002658 312 QL 313 (896)
Q Consensus 312 e~ 313 (896)
.+
T Consensus 115 ~~ 116 (122)
T cd03572 115 KA 116 (122)
T ss_pred HH
Confidence 76
No 291
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]
Probab=55.14 E-value=6e+02 Score=33.10 Aligned_cols=138 Identities=11% Similarity=0.071 Sum_probs=95.2
Q ss_pred HHcCCChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhccc-----chh-hHHHHH
Q 002658 49 LSKLADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSEL-----TST-HVTKII 122 (896)
Q Consensus 49 L~KLsDRDT~k~Aa~eLD~La~~L~pd~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~-----I~P-~LpkIL 122 (896)
+....|.+++++|=+.|.+.-. .+.|-..|..+.-.. ...-..|-.|+.-|.+-+..|+.. +.| +=..|.
T Consensus 12 ~aqs~~p~s~k~AE~~Lrqwe~---q~gF~~kL~~I~~~~-~~~m~lR~~a~i~fkn~I~~~W~~~~~~~i~p~e~v~IR 87 (947)
T COG5657 12 LAQSPDPPSVKCAEERLRQWEK---QHGFALKLLSINLSA-FNSMSLRWAALIQFKNYIDKHWREENGNSILPDENVLIR 87 (947)
T ss_pred hhcCCCCchHhhHHHHHHhhhc---cccHHHHHHHHHhcc-ccchhHHHHHHHHHHhhHHHHhhhhcccCCCCccchHHH
Confidence 3455799999999999987775 334655555554322 234568999999999999888842 222 111344
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcC
Q 002658 123 SHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECAS 197 (896)
Q Consensus 123 ~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~a~ 197 (896)
-.++..+--.+-...-+-+.+++.+|..-. .+.||.+++-|+..|.+.+-.+-.+...++..++...+
T Consensus 88 ~~l~~lii~s~n~l~iq~a~avs~IA~~Df-------PdeWpTL~~DL~~~Ls~~D~~tn~~~L~~~h~Ifk~~r 155 (947)
T COG5657 88 DELFSLIISSSNQLQIQNALAVSRIARLDF-------PDEWPTLVPDLLSLLSEKDMVTNENSLRVLHHIFKRLR 155 (947)
T ss_pred HHHHHHHHcccchHHHHHHHHHHHHHhccC-------cccchhHHHHHHhhhcccchHHHHHHHHHHHHHHHHHh
Confidence 455555544454444466777888877662 25599999999999988777777888888888887754
No 292
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.90 E-value=4.1e+02 Score=34.15 Aligned_cols=175 Identities=14% Similarity=0.128 Sum_probs=114.6
Q ss_pred HHHHHHHHHHhhcCCC-hHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHh--cCCHhHHHHHHHHHHHHHH
Q 002658 118 VTKIISHIVKRLKDSD-SGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMM--EQNKGVQSGAAMCMAKMVE 194 (896)
Q Consensus 118 LpkIL~~IlrrLkDpD-s~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~--Eqnk~VQ~gAasALAkIIE 194 (896)
-..-|+.++.|+.... ..=|..|+.+|-.+++.+ +. .+...-|+||+..|. -.++..-..+.-.+.-++-
T Consensus 20 ~aETI~kLcDRvessTL~eDRR~A~rgLKa~srkY-R~------~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~ 92 (970)
T KOG0946|consen 20 AAETIEKLCDRVESSTLLEDRRDAVRGLKAFSRKY-RE------EVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTS 92 (970)
T ss_pred HHhHHHHHHHHHhhccchhhHHHHHHHHHHHHHHH-HH------HHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHh
Confidence 3444566666666554 355889999999999999 32 446678999999994 3477777777766666664
Q ss_pred hcC------CCC-----chhH-------HHHHHHHHHHhcCCchhhHHHHHHHHHHHHh-cc---ccCcccHHHHHHHHH
Q 002658 195 CAS------DPP-----VVAF-------QKLCARICKLLSNQNFMAKASLLPVVGSLSQ-VG---AIAPQSLEPLLQSIH 252 (896)
Q Consensus 195 ~a~------d~~-----~~yL-------~~LlPRL~kLLks~s~kaK~alL~aIgSLA~-vg---a~~~pyle~lLp~L~ 252 (896)
..+ +.- ...+ +..+.-|+..+...+|.+|-.++.+|.++.. -+ ....-.++.-+..|.
T Consensus 93 ~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lm 172 (970)
T KOG0946|consen 93 HDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLM 172 (970)
T ss_pred cCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHH
Confidence 321 111 0111 2356777788888899999999999999863 22 111112223444566
Q ss_pred HhhCCCCHHHHHHHHHHHHHHHHhcc--hHHHhh---HHHHHHHHH-hhhcCC
Q 002658 253 ECLGSTDWATRKAAADALSALALHSS--NLVIDG---ATSTLTVLE-ACRFDK 299 (896)
Q Consensus 253 e~LsddDW~lRKaA~EaLgsLA~avG--e~L~Py---~~~~I~~LE-~~RfDK 299 (896)
..|.|.--.+|-.|+=.|..+...-+ .++.-| +.++..+++ .--.|.
T Consensus 173 dlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dG 225 (970)
T KOG0946|consen 173 DLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDG 225 (970)
T ss_pred HHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 77777777889888888888887777 555544 566666665 233554
No 293
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=54.07 E-value=2.5e+02 Score=32.62 Aligned_cols=148 Identities=15% Similarity=0.226 Sum_probs=90.6
Q ss_pred hhHhhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCC--ch-hHHHHHHHHHHHhcC--CchhhHHHHHHHHHHHHh
Q 002658 161 TVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPP--VV-AFQKLCARICKLLSN--QNFMAKASLLPVVGSLSQ 235 (896)
Q Consensus 161 ~~~~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~a~d~~--~~-yL~~LlPRL~kLLks--~s~kaK~alL~aIgSLA~ 235 (896)
..|..++.-+...+...++.|-.++--++--++.+..... .. .++.++ +.-|.. .+..=|.++|..|..+..
T Consensus 21 ~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~i---i~SL~~~~~~~~ER~QALkliR~~l~ 97 (371)
T PF14664_consen 21 LVLSFFGERIQCMLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFI---IRSLDRDNKNDVEREQALKLIRAFLE 97 (371)
T ss_pred hhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhh---HhhhcccCCChHHHHHHHHHHHHHHH
Confidence 4466777777765655558888888887766665431110 00 122222 222222 233346799999999987
Q ss_pred c--c-ccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcchHHHhh--HHHHHHHHHhhhcCCChhhHHHHHHH
Q 002658 236 V--G-AIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSSNLVIDG--ATSTLTVLEACRFDKIKPVRDSMNEA 310 (896)
Q Consensus 236 v--g-a~~~pyle~lLp~L~e~LsddDW~lRKaA~EaLgsLA~avGe~L~Py--~~~~I~~LE~~RfDKvKpVRDaA~eA 310 (896)
+ | ..++ ..++.+|..++.+.+-.+|.+++++|..|+..-|+.+.-- +.-+++++-...+. +-+.+..+
T Consensus 98 ~~~~~~~~~---~~vvralvaiae~~~D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~~l~d~~~~----~~~~l~~~ 170 (371)
T PF14664_consen 98 IKKGPKEIP---RGVVRALVAIAEHEDDRLRRICLETLCELALLNPELVAECGGIRVLLRALIDGSFS----ISESLLDT 170 (371)
T ss_pred hcCCcccCC---HHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHHHHHhccHh----HHHHHHHH
Confidence 6 3 2232 3677888888888888999999999999999998766411 33334444322222 44565555
Q ss_pred HHHHHHhc
Q 002658 311 LQLWKKIA 318 (896)
Q Consensus 311 Le~WK~la 318 (896)
+-.|..-|
T Consensus 171 lL~lLd~p 178 (371)
T PF14664_consen 171 LLYLLDSP 178 (371)
T ss_pred HHHHhCCc
Confidence 55554433
No 294
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=53.38 E-value=1.1e+02 Score=30.91 Aligned_cols=94 Identities=21% Similarity=0.302 Sum_probs=63.4
Q ss_pred hHHHHHHHHHHHHHhcCCC-----CCHHHHHHHH--------hhhcCCCChhhHHHHHHHHHHHHHHhcccchhhHHHHH
Q 002658 56 DTHQIAIEDLEKTIQTLSQ-----ESLPMLLNCL--------YESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKII 122 (896)
Q Consensus 56 DT~k~Aa~eLD~La~~L~p-----d~Lp~fLs~L--------~es~ss~k~~vRKeAIllLG~IAeg~~d~I~P~LpkIL 122 (896)
.++..|++-|+.+.+.-++ +..+.|+..+ .....+..+.+=..+++++..+...+...+...++-++
T Consensus 37 ~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~ele~~l 116 (168)
T PF12783_consen 37 RSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLKLELEVFL 116 (168)
T ss_pred HHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777777765422 1111333333 33333444666677999999999999999999999999
Q ss_pred HHHHHhhcCCCh---HHHHHHHHHHHHHHH
Q 002658 123 SHIVKRLKDSDS---GMKEACRDSIGSLSK 149 (896)
Q Consensus 123 ~~IlrrLkDpDs---~VR~Ac~~aLG~LA~ 149 (896)
+.|+.++-+++. .-|..+.+++..++.
T Consensus 117 ~~i~~~il~~~~~~~~~k~~~Le~l~~l~~ 146 (168)
T PF12783_consen 117 SHIILRILESDNSSLWQKELALEILRELCK 146 (168)
T ss_pred HHHHHHHHccCCCcHHHHHHHHHHHHHHHh
Confidence 999997655443 567777777776654
No 295
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=52.83 E-value=55 Score=37.32 Aligned_cols=66 Identities=23% Similarity=0.242 Sum_probs=43.7
Q ss_pred HHhhhcCCCChhhHHHHHHHH-HHHHHHhcccchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHH
Q 002658 83 CLYESSNDPKPAVKKESVRLL-ALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLY 151 (896)
Q Consensus 83 ~L~es~ss~k~~vRKeAIllL-G~IAeg~~d~I~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~l 151 (896)
-|.+...++.|.+|+.|+.-+ |..++ -...+..|=...++.|.+.++|+++ .+ -++.+++.++..-
T Consensus 7 elv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~-~~-~a~~alVnlsq~~ 73 (353)
T KOG2973|consen 7 ELVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLDP-AE-PAATALVNLSQKE 73 (353)
T ss_pred HHHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCccc-cc-HHHHHHHHHHhhH
Confidence 344445578899999998554 44444 3355666777889999999999998 33 3344555555443
No 296
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=52.17 E-value=59 Score=32.73 Aligned_cols=73 Identities=15% Similarity=0.131 Sum_probs=54.9
Q ss_pred HhhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCc-hh-HHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHh
Q 002658 163 VGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPV-VA-FQKLCARICKLLSN-QNFMAKASLLPVVGSLSQ 235 (896)
Q Consensus 163 ~~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~a~d~~~-~y-L~~LlPRL~kLLks-~s~kaK~alL~aIgSLA~ 235 (896)
-...++.|-..|...|++||.-|..-|..++++++..+. +. =...+..|.+++.. .+..+|.-++.+|..-+.
T Consensus 35 ~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~ 110 (144)
T cd03568 35 AKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWAD 110 (144)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 355777777888888999999999999999999876543 22 12456667777776 577788888888887763
No 297
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=51.58 E-value=80 Score=31.20 Aligned_cols=78 Identities=17% Similarity=0.224 Sum_probs=58.2
Q ss_pred cccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcchHHHhh------HHHHHHHHHhhhcCCChhhHHHHHHHHHHH
Q 002658 241 PQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSSNLVIDG------ATSTLTVLEACRFDKIKPVRDSMNEALQLW 314 (896)
Q Consensus 241 ~pyle~lLp~L~e~LsddDW~lRKaA~EaLgsLA~avGe~L~Py------~~~~I~~LE~~RfDKvKpVRDaA~eALe~W 314 (896)
.......+..|...|.+.+..+-..|+..|-.+....|+.|... +..+.+++.....+...+||+-+++.++-|
T Consensus 37 ~~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W 116 (140)
T PF00790_consen 37 PDGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEW 116 (140)
T ss_dssp TTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHH
Confidence 34456778888899999999999999999999999999777654 344444444444433334999999999999
Q ss_pred HHhc
Q 002658 315 KKIA 318 (896)
Q Consensus 315 K~la 318 (896)
..--
T Consensus 117 ~~~f 120 (140)
T PF00790_consen 117 AEAF 120 (140)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 8644
No 298
>PRK14707 hypothetical protein; Provisional
Probab=51.58 E-value=9.7e+02 Score=34.47 Aligned_cols=160 Identities=18% Similarity=0.173 Sum_probs=90.8
Q ss_pred HHHHHcCCChhHHHHHHHHHHHHHh-------cCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhcc---cch
Q 002658 46 LTSLSKLADRDTHQIAIEDLEKTIQ-------TLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSE---LTS 115 (896)
Q Consensus 46 l~~L~KLsDRDT~k~Aa~eLD~La~-------~L~pd~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d---~I~ 115 (896)
+..|.|-.+.+..+.|+..|..... .|...++..+|+.|. ||+.+..|..++..++..... ...
T Consensus 547 lnalSKwp~s~~C~~A~~~iA~~l~~~~~~~~~L~aq~Vs~llNaLS------KWP~~~aC~~Aa~~LA~~l~~~~~lr~ 620 (2710)
T PRK14707 547 LKALSKWPDKQLCAVAASGLAERLADEPQLPKDLHRQGVVIVLNALS------KWPDTAVCAEAVNALAERLVDEPDLRK 620 (2710)
T ss_pred HHhhhcCCchhHHHHHHHHHHHHhhcchhhHHhhhhhHHHHHHHhhc------cCCCcHHHHHHHHHHHHHhccChhhhh
Confidence 3445555788888888887776532 233334566666654 577777777777777776542 223
Q ss_pred hhHHHHHHHHHHhhcC-CChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhc-CCHhHHHHHHHHHHHHH
Q 002658 116 THVTKIISHIVKRLKD-SDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMME-QNKGVQSGAAMCMAKMV 193 (896)
Q Consensus 116 P~LpkIL~~IlrrLkD-pDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~E-qnk~VQ~gAasALAkII 193 (896)
.+-++=+..++..|.- |+. ..|..++.+|+.++..... .-...-..=+..++.+|+- +...+=..|+.+|+..+
T Consensus 621 ~l~~q~lan~lNALSKWP~s---~~C~~Aa~rLA~rl~~~~~-l~~~fnaQ~vAn~LNALSKWPe~e~Cr~Aa~~LA~rL 696 (2710)
T PRK14707 621 ELDPVDVTNVLNALSKWPGT---EVCAEVARLLAGRLVGDRL-LRKTFNSLDVANALNALSKWPDTPVCAAAAGGMAERL 696 (2710)
T ss_pred hccHHHHHHHHhhhhcCCCc---hHHHHHHHHHHHHhhhchh-hHhhcchHHHHHHHHhhhcCCCchHHHHHHHHHHHHH
Confidence 4445556777777633 433 5788888899888754310 0012223445566777742 33444445777777766
Q ss_pred HhcCCCCchhHHHHHHHHHHHh
Q 002658 194 ECASDPPVVAFQKLCARICKLL 215 (896)
Q Consensus 194 E~a~d~~~~yL~~LlPRL~kLL 215 (896)
...+.+-..+-++=+-.++..|
T Consensus 697 a~~~~Lr~al~pQ~vAN~LNAL 718 (2710)
T PRK14707 697 AADPGLRKELNPVDVANALNAL 718 (2710)
T ss_pred hcChhhHhhcCHHHHHHHHhhh
Confidence 6543333333333333333333
No 299
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=51.36 E-value=3.8e+02 Score=29.70 Aligned_cols=69 Identities=14% Similarity=0.254 Sum_probs=48.4
Q ss_pred HHhcccchhhHHHHHHHH--------HHhhcCCC--hHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhcC
Q 002658 108 ELHSELTSTHVTKIISHI--------VKRLKDSD--SGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQ 177 (896)
Q Consensus 108 eg~~d~I~P~LpkIL~~I--------lrrLkDpD--s~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~Eq 177 (896)
..+||.+...|+.|+..+ .+-+.|++ ..||.+|..+++.++..-... .+.+..+++.+|....+.
T Consensus 91 ~l~GD~~tE~l~~ilasv~~G~~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~~-----Re~vi~~f~~ll~~~l~~ 165 (249)
T PF06685_consen 91 DLFGDFITEDLPRILASVGDGDIEPLKELIEDPDADEYVRMAAISALAFLVHEGPIS-----REEVIQYFRELLNYFLER 165 (249)
T ss_pred HHHcchhHhHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCCC-----HHHHHHHHHHHHHHHhcc
Confidence 346677777777777755 34577775 689999999999998877332 245667888888875555
Q ss_pred CHhH
Q 002658 178 NKGV 181 (896)
Q Consensus 178 nk~V 181 (896)
++..
T Consensus 166 ~~~~ 169 (249)
T PF06685_consen 166 NPSF 169 (249)
T ss_pred CchH
Confidence 5444
No 300
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=51.30 E-value=98 Score=28.41 Aligned_cols=67 Identities=9% Similarity=0.129 Sum_probs=52.6
Q ss_pred HHHHHHHHHhh-CCCCHHHHHHHHHHHHHHHHhcchHHHhhHHHHHHHHHhhhcCCChhhHHHHHHHH
Q 002658 245 EPLLQSIHECL-GSTDWATRKAAADALSALALHSSNLVIDGATSTLTVLEACRFDKIKPVRDSMNEAL 311 (896)
Q Consensus 245 e~lLp~L~e~L-sddDW~lRKaA~EaLgsLA~avGe~L~Py~~~~I~~LE~~RfDKvKpVRDaA~eAL 311 (896)
..+|.++...+ ...+-++|...++|+..|....|+.+..--..++.++.....|..+.+-..|.+.+
T Consensus 16 ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~ 83 (86)
T PF09324_consen 16 KDFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIV 83 (86)
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence 35666666664 44688999999999999999999999988999999999888888885444443333
No 301
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=50.85 E-value=1.1e+02 Score=30.04 Aligned_cols=76 Identities=11% Similarity=0.034 Sum_probs=56.7
Q ss_pred ccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcchHHHhhH------HHHHHHHHhhhcCCChhhHHHHHHHHHHHH
Q 002658 242 QSLEPLLQSIHECLGSTDWATRKAAADALSALALHSSNLVIDGA------TSTLTVLEACRFDKIKPVRDSMNEALQLWK 315 (896)
Q Consensus 242 pyle~lLp~L~e~LsddDW~lRKaA~EaLgsLA~avGe~L~Py~------~~~I~~LE~~RfDKvKpVRDaA~eALe~WK 315 (896)
......+..|...|.+.+..+...|+..|-.+....|+.|...+ ..+++++... --....||+-+++.++-|.
T Consensus 33 ~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~-~~~~~~Vk~kil~ll~~W~ 111 (133)
T cd03561 33 NGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNS-PKYDPKVREKALELILAWS 111 (133)
T ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCC-CCCCHHHHHHHHHHHHHHH
Confidence 34557788888899999999999999999999999998665443 3344444322 1245679999999999999
Q ss_pred Hhc
Q 002658 316 KIA 318 (896)
Q Consensus 316 ~la 318 (896)
.--
T Consensus 112 ~~f 114 (133)
T cd03561 112 ESF 114 (133)
T ss_pred HHh
Confidence 744
No 302
>cd05391 RasGAP_p120GAP p120GAP is a negative regulator of Ras that stimulates hydrolysis of bound GTP to GDP. Once the Ras regulator p120GAP, a member of the GAP protein family, is recruited to the membrane, it is transiently immobilized to interact with Ras-GTP. The down regulation of Ras by p120GAP is a critical step in the regulation of many cellular processes, which is disrupted in approximately 30% of human cancers. p120GAP contains SH2, SH3, PH, calcium- and lipid-binding domains, suggesting its involvement in a complex network of cellular interactions in vivo.
Probab=50.47 E-value=4.3e+02 Score=30.13 Aligned_cols=55 Identities=9% Similarity=0.019 Sum_probs=38.6
Q ss_pred chhhHHHHHHHHHHhhcCCChHHHHHHHH--HHHHHHHHHhcccccCCchhHhhhHHHHHHHHh
Q 002658 114 TSTHVTKIISHIVKRLKDSDSGMKEACRD--SIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMM 175 (896)
Q Consensus 114 I~P~LpkIL~~IlrrLkDpDs~VR~Ac~~--aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~ 175 (896)
..+.|.+++..=+..-.++...+|.-+.. ++..+.... + ..++..+|.|++..+.
T Consensus 46 ~~~ll~~Li~~EI~~~~~~~tLFR~NSlaTK~~~~y~k~~---G----~~YL~~~L~pvI~~i~ 102 (315)
T cd05391 46 ESLLLRTLNDREISMEDEATTLFRATTLASTLMEQYMKAT---A----TKFVHHALKDSILKIM 102 (315)
T ss_pred HHHHHHHHHHHHHHhcCChhhhhhcCcHHHHHHHHHHHHH---H----HHHHHHHHHHHHHHHH
Confidence 44667777777777777788888865544 477776654 2 3778888888888773
No 303
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=50.23 E-value=4e+02 Score=29.60 Aligned_cols=164 Identities=14% Similarity=0.192 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHHHhcC-----CCC--C----HHHHHHHHhhhcCCCChhh-HHHHHHHHHHHHHHhcccchhhHHHHHHH
Q 002658 57 THQIAIEDLEKTIQTL-----SQE--S----LPMLLNCLYESSNDPKPAV-KKESVRLLALVCELHSELTSTHVTKIISH 124 (896)
Q Consensus 57 T~k~Aa~eLD~La~~L-----~pd--~----Lp~fLs~L~es~ss~k~~v-RKeAIllLG~IAeg~~d~I~P~LpkIL~~ 124 (896)
|...+.+-|++++... ++. . +-..|+.+.....++++.. -..+...-..+++.|...-.+.|.+|+..
T Consensus 78 t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~~~~~La~il~~ 157 (262)
T PF14225_consen 78 TYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQGLPNLARILSS 157 (262)
T ss_pred cHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhCCCccHHHHHHH
Confidence 5555555566555432 222 1 3334555555555554211 13333444455555555556678888875
Q ss_pred HHH-hhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCchh
Q 002658 125 IVK-RLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVA 203 (896)
Q Consensus 125 Ilr-rLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~a~d~~~~y 203 (896)
..+ +.++.+.-+++++. .|.+.++ .++....+--|++.|...-+-+|......|..++...+-. .+.
T Consensus 158 ya~~~fr~~~dfl~~v~~----~l~~~f~-------P~~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~-~~~ 225 (262)
T PF14225_consen 158 YAKGRFRDKDDFLSQVVS----YLREAFF-------PDHEFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMR-SPH 225 (262)
T ss_pred HHhcCCCCHHHHHHHHHH----HHHHHhC-------chhHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCC-CCc
Confidence 554 47777777766554 3333331 1234556666777776666789999999999999875322 335
Q ss_pred HHHHHHHHHHHhcCCchhhHHHHHHHHHH
Q 002658 204 FQKLCARICKLLSNQNFMAKASLLPVVGS 232 (896)
Q Consensus 204 L~~LlPRL~kLLks~s~kaK~alL~aIgS 232 (896)
...|+--+.++|+++...-=-.+|+.+-+
T Consensus 226 ~~dlispllrlL~t~~~~eAL~VLd~~v~ 254 (262)
T PF14225_consen 226 GADLISPLLRLLQTDLWMEALEVLDEIVT 254 (262)
T ss_pred chHHHHHHHHHhCCccHHHHHHHHHHHHh
Confidence 66788888889988766521234444444
No 304
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=49.83 E-value=2.5e+02 Score=27.12 Aligned_cols=101 Identities=19% Similarity=0.310 Sum_probs=65.4
Q ss_pred HHHHHhcCCchhhHHHHHHHHHHHHhccccCcccHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHHHHhcchHHHhhHH
Q 002658 210 RICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECL---GSTDWATRKAAADALSALALHSSNLVIDGAT 286 (896)
Q Consensus 210 RL~kLLks~s~kaK~alL~aIgSLA~vga~~~pyle~lLp~L~e~L---sddDW~lRKaA~EaLgsLA~avGe~L~Py~~ 286 (896)
++-++.++........++.-|....- -...+..+|..|...| ...+|..---|+..|-.|+..-++.|...+.
T Consensus 7 ~v~eAT~~d~~gp~~~~l~eIa~~t~----~~~~~~~I~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~nG~~~~~~~~~ 82 (125)
T PF01417_consen 7 KVREATSNDPWGPPGKLLAEIAQLTY----NSKDCQEIMDVLWKRLSKSDGKNWRHVYKALTLLEYLLKNGSERFVDELR 82 (125)
T ss_dssp HHHHHTSSSSSS--HHHHHHHHHHTT----SCHHHHHHHHHHHHHHHSSTSSGHHHHHHHHHHHHHHHHHS-HHHHHHHH
T ss_pred HHHHHcCCCCCCcCHHHHHHHHHHHh----ccccHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHCCHHHHHHHH
Confidence 34455566555555566666655421 1256778999999999 5678999999999999999999987777765
Q ss_pred HHHH---HHHhhhc-CC---C--hhhHHHHHHHHHHH
Q 002658 287 STLT---VLEACRF-DK---I--KPVRDSMNEALQLW 314 (896)
Q Consensus 287 ~~I~---~LE~~Rf-DK---v--KpVRDaA~eALe~W 314 (896)
.-+. .|...++ |. + ..||+.|-+.+++.
T Consensus 83 ~~~~~I~~l~~f~~~d~~g~d~~~~VR~~A~~i~~lL 119 (125)
T PF01417_consen 83 DHIDIIRELQDFQYVDPKGKDQGQNVREKAKEILELL 119 (125)
T ss_dssp HTHHHHHGGGG---BBTTSTBHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcceeeccCCCCccHHHHHHHHHHHHHHHh
Confidence 4444 4444444 32 1 23999988877764
No 305
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=49.72 E-value=5.1e+02 Score=30.75 Aligned_cols=151 Identities=14% Similarity=0.102 Sum_probs=95.1
Q ss_pred HhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHh--cCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhccc
Q 002658 36 LAMVEMKQKILTSLSKLADRDTHQIAIEDLEKTIQ--TLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSEL 113 (896)
Q Consensus 36 ~~~~~Lk~rll~~L~KLsDRDT~k~Aa~eLD~La~--~L~pd~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~ 113 (896)
..+-.+-++++.+-.+..+.+..+..+.-||.++. .+|++.|+.++..|+...... ...+.+-.++-+++..|...
T Consensus 172 ~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~sl~~~i~vLCsi~~~~--~l~~~~w~~m~nL~~S~~g~ 249 (464)
T PF11864_consen 172 DEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSESLSPCIEVLCSIVNSV--SLCKPSWRTMRNLLKSHLGH 249 (464)
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHHHHHHHHHHhhHhccc--ccchhHHHHHHHHHcCccHH
Confidence 44455666666666677777777889999999997 578878999999998775443 55677888888888766432
Q ss_pred chhhHHHHHHHHHHhhcCCC------hHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhcCCHhHHHHHHH
Q 002658 114 TSTHVTKIISHIVKRLKDSD------SGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAM 187 (896)
Q Consensus 114 I~P~LpkIL~~IlrrLkDpD------s~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAas 187 (896)
.++-++..-|.+++ ..+-.-|...++.+.-...+.+.....-....+++.|..+|...+..|-.....
T Consensus 250 ------~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~~~~v~~eIl~ 323 (464)
T PF11864_consen 250 ------SAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSNSPRVDYEILL 323 (464)
T ss_pred ------HHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCCCCeehHHHHH
Confidence 22333444443222 222224445555544444222111111112248899999998777777777788
Q ss_pred HHHHHHH
Q 002658 188 CMAKMVE 194 (896)
Q Consensus 188 ALAkIIE 194 (896)
++..+++
T Consensus 324 ~i~~ll~ 330 (464)
T PF11864_consen 324 LINRLLD 330 (464)
T ss_pred HHHHHHh
Confidence 8888883
No 306
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=49.28 E-value=1.8e+02 Score=29.32 Aligned_cols=109 Identities=18% Similarity=0.155 Sum_probs=64.6
Q ss_pred HhhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcc---cc
Q 002658 163 VGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVG---AI 239 (896)
Q Consensus 163 ~~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~a~d~~~~yL~~LlPRL~kLLks~s~kaK~alL~aIgSLA~vg---a~ 239 (896)
.+++-..++..|...+..||..|.-||-..=. ++|.+--..|..+++...|+- -+..+.... ..
T Consensus 15 ~~~l~~~~~~LL~~~d~~vQklAL~cll~~k~-------~~l~pY~d~L~~Lldd~~frd------eL~~f~~~~~~~~I 81 (141)
T PF07539_consen 15 SDELYDALLRLLSSRDPEVQKLALDCLLTWKD-------PYLTPYKDNLENLLDDKTFRD------ELTTFNLSDESSVI 81 (141)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-------HHHHhHHHHHHHHcCcchHHH------HHHhhcccCCcCCC
Confidence 34455566677788999999999999876432 356666677888888776652 233332111 23
Q ss_pred CcccHHHHHHHHHHhh----CC-----CCHHHHHHHHHHHHHHHHhcchHHHhhHH
Q 002658 240 APQSLEPLLQSIHECL----GS-----TDWATRKAAADALSALALHSSNLVIDGAT 286 (896)
Q Consensus 240 ~~pyle~lLp~L~e~L----sd-----dDW~lRKaA~EaLgsLA~avGe~L~Py~~ 286 (896)
-..+-+.+||.++.+| .. .....|+.| .|..|+..-.+.+.+|+.
T Consensus 82 ~~ehR~~l~pvvlRILygk~~~~~~~~~~~~~rR~a--IL~~L~~l~~~El~~Fl~ 135 (141)
T PF07539_consen 82 EEEHRPELMPVVLRILYGKMQSRKGSGSKKASRRAA--ILRFLAGLSEEELGLFLD 135 (141)
T ss_pred CHHHHhHHHHHHHHHHHHHHhhcCCCCCcchHHHHH--HHHHHhCCCHHHHHHHHH
Confidence 3566677777766653 21 111344444 344444444465665554
No 307
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=48.96 E-value=5.1e+02 Score=34.24 Aligned_cols=168 Identities=18% Similarity=0.199 Sum_probs=103.0
Q ss_pred HHHHHHHHHHHHHHhcccchhhHHHHHH-HHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHH
Q 002658 96 KKESVRLLALVCELHSELTSTHVTKIIS-HIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAM 174 (896)
Q Consensus 96 RKeAIllLG~IAeg~~d~I~P~LpkIL~-~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL 174 (896)
|=+.++.....-..+.+-+..+|..|.- ..+.|.+|-++.||..|...||..+.-+..- + .-..||+=+==.|
T Consensus 262 rle~Ll~~r~etqe~~d~i~~mi~~if~sVFVHRYRDV~~~IRaiCiqeLgiWi~~yP~~-F-----l~dsYLKYiGWtL 335 (1048)
T KOG2011|consen 262 RLESLLMLRKETQEQQDEIESMINDIFDSVFVHRYRDVDPDIRAICIQELGIWIKSYPEI-F-----LSDSYLKYIGWTL 335 (1048)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeeecccCchHHHHHHHHHHHHHHHhccHH-H-----hcchHHHHhccee
Confidence 4566666666666666777777777765 5678899999999999999999877777211 0 0112333333334
Q ss_pred hcCCHhHHHHHHHHHHHHHHhcCCCC--chhHHHHHHHHHHHh-cCCchhhHHHHHHHHHHHHhccccCcccH-HHHHHH
Q 002658 175 MEQNKGVQSGAAMCMAKMVECASDPP--VVAFQKLCARICKLL-SNQNFMAKASLLPVVGSLSQVGAIAPQSL-EPLLQS 250 (896)
Q Consensus 175 ~Eqnk~VQ~gAasALAkIIE~a~d~~--~~yL~~LlPRL~kLL-ks~s~kaK~alL~aIgSLA~vga~~~pyl-e~lLp~ 250 (896)
.|.+-.|--....+|.++.|...+.. ..+..+-=.|++.+. ..-+.-++...|-.......-| ++ +.-+-.
T Consensus 336 sDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRFK~RIVeMadrd~~~~Vrav~L~~~~~~~~~g-----~L~d~di~~ 410 (1048)
T KOG2011|consen 336 SDKNGTVRLRCLKALIKLYEKDEDKDKLELFTSRFKDRIVEMADRDRNVSVRAVGLVLCLLLSSSG-----LLSDKDILI 410 (1048)
T ss_pred ecCccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHhccc-----ccChhHHHH
Confidence 68888999999999999999732221 234555556667666 3333444443332222221111 11 122334
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHHH
Q 002658 251 IHECLGSTDWATRKAAADALSALA 274 (896)
Q Consensus 251 L~e~LsddDW~lRKaA~EaLgsLA 274 (896)
+..++-+.+.+++++|.+-|..-.
T Consensus 411 Vy~Li~d~~r~~~~aa~~fl~~k~ 434 (1048)
T KOG2011|consen 411 VYSLIYDSNRRVAVAAGEFLYKKL 434 (1048)
T ss_pred HHHHHhccCcchHHHHHHHHHHHh
Confidence 456666778888888888877643
No 308
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.66 E-value=7.2e+02 Score=34.36 Aligned_cols=153 Identities=13% Similarity=0.093 Sum_probs=80.5
Q ss_pred chhhH-HHHHHHHHHhhcCCC-hHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhcCCHhHHHHHHHHHHH
Q 002658 114 TSTHV-TKIISHIVKRLKDSD-SGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAK 191 (896)
Q Consensus 114 I~P~L-pkIL~~IlrrLkDpD-s~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasALAk 191 (896)
+.+|+ +.|+..+.....|+. =.||.++..-+..++-.-+ +.........+-+.++.+|.+....|-+-|+-||+.
T Consensus 1519 ~~~~l~~e~l~~l~~~~~~~~tw~vr~avl~fl~~~vy~n~---Fv~~~~~r~dI~~l~~s~l~D~~i~vre~Aa~~Lsg 1595 (1710)
T KOG1851|consen 1519 IGHHLQPEFLRDLKMLTADSSTWRVRSAVLKFLQTVVYSNI---FVSQELRRDDIRKLLESLLNDDQIEVREEAAKCLSG 1595 (1710)
T ss_pred cchhhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHh---hcccchhHHHHHHHHHHHHcchHHHHHHHHHHHHHH
Confidence 44443 334444443444554 4899987766555544331 111224456677778888887778899999999999
Q ss_pred HHHhcCCCCchhHHHHHHHHHHHhcCC-chhhHH-HHHHHHHHHHhccccCcccHHHHHHHHHHhhCC---CCHHHHHHH
Q 002658 192 MVECASDPPVVAFQKLCARICKLLSNQ-NFMAKA-SLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGS---TDWATRKAA 266 (896)
Q Consensus 192 IIE~a~d~~~~yL~~LlPRL~kLLks~-s~kaK~-alL~aIgSLA~vga~~~pyle~lLp~L~e~Lsd---dDW~lRKaA 266 (896)
++.+..-.... ...-++...+... ...++. ++.-.+|+++- .||..++..+|..+..|.. +.-.++.++
T Consensus 1596 l~~~s~~~~~~---~k~d~~~~~~~s~s~~~i~~HgavlgLgA~Vl---afPy~vP~wip~~L~~Ls~fa~e~~~i~~tv 1669 (1710)
T KOG1851|consen 1596 LLQGSKFQFVS---DKRDTTSNILQSKSKDEIKAHGAVLGLGAIVL---AFPYVVPLWIPKPLMNLSSFARESAAIKQTV 1669 (1710)
T ss_pred HHhccccccch---HhhhhhhhhhhhcchHHHHhhhhHHHHHHHHH---hccccchhhhHHHHHHHHhhcCCchHHHHHH
Confidence 99987544332 1112222222211 112222 22333444432 3455555566554444332 234566666
Q ss_pred HHHHHHHHH
Q 002658 267 ADALSALAL 275 (896)
Q Consensus 267 ~EaLgsLA~ 275 (896)
-+++...-.
T Consensus 1670 kktvseFrr 1678 (1710)
T KOG1851|consen 1670 KKTVSEFRR 1678 (1710)
T ss_pred HHHHHHHHH
Confidence 666554333
No 309
>PRK09169 hypothetical protein; Validated
Probab=48.32 E-value=5.9e+02 Score=36.39 Aligned_cols=229 Identities=14% Similarity=0.105 Sum_probs=0.0
Q ss_pred HHHHHHHcCCChhHHHHHHHHH-------HHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHH---Hhccc
Q 002658 44 KILTSLSKLADRDTHQIAIEDL-------EKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCE---LHSEL 113 (896)
Q Consensus 44 rll~~L~KLsDRDT~k~Aa~eL-------D~La~~L~pd~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAe---g~~d~ 113 (896)
.++..|.|..|....+.|+..| ......+++..+.+.|..|. --......|+++..+.+.++. ....+
T Consensus 671 N~LnALSKWp~~~~c~~Aa~aLA~rl~~~~~~~~~f~aq~lAn~LnAls--Kwp~~~acr~A~~~LA~rL~~~~~l~~a~ 748 (2316)
T PRK09169 671 NALNALSKWPDEAACRAAALALAERLAREAGLRQAFDAQGVANALNALS--KWPEEEACRAAAEALAGRLAADADLRQAM 748 (2316)
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHhhcchhhhhhcCHHHHHHHHHHHH--hccCccHHHHHHHHHHHHHhcChHHHhhc
Q ss_pred chhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhcCCHhHHHHHHHHHHHHH
Q 002658 114 TSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMV 193 (896)
Q Consensus 114 I~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasALAkII 193 (896)
-...|...+..+-+-..++. |..++-.|+..+-..+.. |..| +..--.-.+++|++++
T Consensus 749 ~aQ~lAnsLNaLsKwp~~~~------c~~a~~~La~~lg~~~~p-----~~~f-----------~~~~laq~aNa~aR~~ 806 (2316)
T PRK09169 749 NPQGLANSLNALSKWPQEPA------CQQAALLLAERLGSAGLP-----FRTF-----------TMAGLAQLANAMARLI 806 (2316)
T ss_pred CHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHhccCCCc-----hhhc-----------CHHHHHHHHHHHHHHH
Q ss_pred H----hcCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcc--ccCcccHHHHHHHHHHhhCC--CCHHHHHH
Q 002658 194 E----CASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVG--AIAPQSLEPLLQSIHECLGS--TDWATRKA 265 (896)
Q Consensus 194 E----~a~d~~~~yL~~LlPRL~kLLks~s~kaK~alL~aIgSLA~vg--a~~~pyle~lLp~L~e~Lsd--dDW~lRKa 265 (896)
. .-+..+.....--+..|...|+.-.-....+-..-|+.|+++- ......+..+-+.-++.|.. .+..+|-.
T Consensus 807 ~~~~~~~~~~~~~~~~~~L~~LA~hL~~~~~~~~~a~~~~i~~ifKalas~~l~d~lr~La~~gL~Rl~~L~~~t~~r~~ 886 (2316)
T PRK09169 807 LKLEDQDDEEDLALARARLRELAAHLDLRPERLEQADARDIAVLFKALASARLKDGLRLLARPGLNRLATLHRATGFRED 886 (2316)
T ss_pred hhccccccchhhHHHHHHHHHHHHHhccCchhhhhccchhHHHHHHHHHhccchhhhhhhhHHHHHHHHHHhhccCCCCC
Q ss_pred HHHHHHHHHHhcc-----hHHHhhHHHHHHHHHhhh
Q 002658 266 AADALSALALHSS-----NLVIDGATSTLTVLEACR 296 (896)
Q Consensus 266 A~EaLgsLA~avG-----e~L~Py~~~~I~~LE~~R 296 (896)
-+|+|++|+..+= ..|.+|..+.+++|+..+
T Consensus 887 ~LEt~g~L~~gLLPlaRspeL~~~r~~aLr~l~~~Q 922 (2316)
T PRK09169 887 NLETLGNLCAGLLPLARSPELKAHRADALRLLERLQ 922 (2316)
T ss_pred cHhHHHHHHhhhcccccChhhHHhHHHHHHHHhhhc
No 310
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=47.30 E-value=32 Score=32.05 Aligned_cols=48 Identities=23% Similarity=0.213 Sum_probs=38.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcchHHHhhHHHHHHHHHhhhcCCChhh
Q 002658 256 GSTDWATRKAAADALSALALHSSNLVIDGATSTLTVLEACRFDKIKPV 303 (896)
Q Consensus 256 sddDW~lRKaA~EaLgsLA~avGe~L~Py~~~~I~~LE~~RfDKvKpV 303 (896)
.++.|.+|.-|++.|+.|....++.......++++.|...-+|..++.
T Consensus 16 ~~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~ 63 (92)
T PF07571_consen 16 VDNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPL 63 (92)
T ss_pred CcchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCH
Confidence 356899999999999999999995544445678888887778877653
No 311
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=46.31 E-value=4.9e+02 Score=29.49 Aligned_cols=235 Identities=14% Similarity=0.135 Sum_probs=125.4
Q ss_pred HHHHHHcCC-ChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhccc----ch----
Q 002658 45 ILTSLSKLA-DRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSEL----TS---- 115 (896)
Q Consensus 45 ll~~L~KLs-DRDT~k~Aa~eLD~La~~L~pd~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~----I~---- 115 (896)
+-..|.+++ +.+.+..+..-.+.|. ...+..|+..+++.+......|+++|..++...+.. +.
T Consensus 29 L~~~l~~ls~~~~~~~~g~~l~~~iL--------~~~~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd 100 (330)
T PF11707_consen 29 LALLLKKLSSDLSFQSYGLELIRSIL--------QNHLKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFD 100 (330)
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHH--------HHHHHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcC
Confidence 333445554 3434444544444444 344778888887888888889999999999944322 22
Q ss_pred ---hhHHHHHHHHHHhhcCCC------hHHHHHHHHHHHHHHHHHhcccccCCchh--HhhhHHHHHHHHhcCCHhHHHH
Q 002658 116 ---THVTKIISHIVKRLKDSD------SGMKEACRDSIGSLSKLYLNGKEENNGTV--VGLFVKPLFEAMMEQNKGVQSG 184 (896)
Q Consensus 116 ---P~LpkIL~~IlrrLkDpD------s~VR~Ac~~aLG~LA~~li~~~~e~~~~~--~~~lL~pL~eaL~Eqnk~VQ~g 184 (896)
+-|++++..=.+...+.. +.||.+...-+-.+.... .+. -..+. -..++..++..|......+..-
T Consensus 101 ~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F~Lsfl~~~-~~~--~~~~lL~~~~~~~~l~k~l~~D~~~~v~~ 177 (330)
T PF11707_consen 101 FSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRFWLSFLSSG-DPE--LKRDLLSQKKLMSALFKGLRKDPPETVIL 177 (330)
T ss_pred CchhhHHHHhccccccccccccccccCcCHHHHHHHHHHHHHccC-CHH--HHHHHHHcCchHHHHHhcccCCCHHHHHH
Confidence 223333322111122211 278887777655555444 110 00000 1123677777776555555555
Q ss_pred HHHHHH-HHHHhc---CCCCchhHH-HHHHHHHHHhcCCch----hhHHHHHHHHHHHH---hccccCc-----------
Q 002658 185 AAMCMA-KMVECA---SDPPVVAFQ-KLCARICKLLSNQNF----MAKASLLPVVGSLS---QVGAIAP----------- 241 (896)
Q Consensus 185 AasALA-kIIE~a---~d~~~~yL~-~LlPRL~kLLks~s~----kaK~alL~aIgSLA---~vga~~~----------- 241 (896)
...+|. .|+++. +..-..+++ ..+.+|..+...... .+...+.+.+-.+. ..|-.++
T Consensus 178 iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~~~~~~~~~~~vh~fL~~lcT~p~~Gv~f~d~~~~~~~~~~ 257 (330)
T PF11707_consen 178 ILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRDGEDEKSSVADLVHEFLLALCTDPKHGVCFPDNGWYPRESDS 257 (330)
T ss_pred HHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcccCCcccchHHHHHHHHHHHHhcCCCcccccCCCCcCcCcccc
Confidence 555554 344432 111112344 467788887776655 55555555555553 1221111
Q ss_pred -----------ccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcchHHHhhHHHHHHHHH
Q 002658 242 -----------QSLEPLLQSIHECLGSTDWATRKAAADALSALALHSSNLVIDGATSTLTVLE 293 (896)
Q Consensus 242 -----------pyle~lLp~L~e~LsddDW~lRKaA~EaLgsLA~avGe~L~Py~~~~I~~LE 293 (896)
+.-..++-.++..|.-.+-. ...+.+..|..+.||.+.||+..+-..++
T Consensus 258 ~~~~~~~~~~~~~~Nk~L~~ll~~lkp~e~~---~q~~Lvl~Il~~~PeLva~Y~~~~~~~~~ 317 (330)
T PF11707_consen 258 GVPVTINNKSFKINNKLLLNLLKKLKPWEDD---RQQELVLKILKACPELVAPYFNNLPYSLE 317 (330)
T ss_pred cccccccCCCCCcccHHHHHHHHHCCCCccH---HHHHHHHHHHHHChHHHHHHHHhhhhhCC
Confidence 12234444455555442211 23567889999999999999887755444
No 312
>KOG1877 consensus Putative transmembrane protein cmp44E [General function prediction only]
Probab=44.98 E-value=1.3e+02 Score=38.49 Aligned_cols=167 Identities=15% Similarity=0.192 Sum_probs=103.7
Q ss_pred HHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHh----hcCCChHHHHHHHHHHHHHHHHHh
Q 002658 77 LPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKR----LKDSDSGMKEACRDSIGSLSKLYL 152 (896)
Q Consensus 77 Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~Ilrr----LkDpDs~VR~Ac~~aLG~LA~~li 152 (896)
+--++.-|+....+..+..|+-+-+.+=++. + ..-|+||=.++..| |......-=.++.+++-.|..++-
T Consensus 15 yKkLV~~iFPr~~e~gpn~s~m~kL~~YAas--n----p~KL~KI~~yL~~R~~kdl~~~r~~~v~Iamea~~kLL~~C~ 88 (819)
T KOG1877|consen 15 YKKLVDNIFPRSPEDGPNKSKMEKLTFYAAS--N----PSKLPKIGTYLEERCYKDLRRERFGSVKIAMEAYDKLLQACK 88 (819)
T ss_pred HHHHHHHhCCCCCCCCcccccHHHHHHHHhh--C----hhhhhHHHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHh
Confidence 4445566666666667777776655552222 1 22355555555554 444455555678888888888883
Q ss_pred cccccCCchhHhhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCc--hhHHHHHHHHHHHhcCC-----chhhHHH
Q 002658 153 NGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPV--VAFQKLCARICKLLSNQ-----NFMAKAS 225 (896)
Q Consensus 153 ~~~~e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~a~d~~~--~yL~~LlPRL~kLLks~-----s~kaK~a 225 (896)
+. ..-....||.-+..+|...+++.|..+|.|+.+|+....+.+. --+++.+++|+++-... ...+|++
T Consensus 89 eq----~n~F~ssfL~mv~~LLes~~~~~~ilg~~sf~~F~~i~~d~~sy~~~yd~Fi~kf~~l~he~~~~~~~~~lr~a 164 (819)
T KOG1877|consen 89 EQ----INLFVSSFLRMVQKLLESNNDEMQILGTNSFVKFANIEEDGPSYHRNYDFFISKFSSLCHERGDDDMKDCLRAA 164 (819)
T ss_pred hh----hHHHHHHHHHHHHHHHhcCCCceeeehhhHHHHHHhhcccCchhhhhhHHHHHHHHHHhhcccchhhhhhccHh
Confidence 22 2344566777777777777999999999999999987655432 12678999999998763 2234555
Q ss_pred HHHHHHHHHh--cc-----ccC-cccHHHHHHHHHH
Q 002658 226 LLPVVGSLSQ--VG-----AIA-PQSLEPLLQSIHE 253 (896)
Q Consensus 226 lL~aIgSLA~--vg-----a~~-~pyle~lLp~L~e 253 (896)
-|.++.+++. +. ... ..+++.++|.+.-
T Consensus 165 gl~gLsa~v~~tv~d~l~~ti~e~~h~d~ivpsl~~ 200 (819)
T KOG1877|consen 165 GLQGLSAVVWLTVSDHLAATIWEPQHMDKIVPSLLF 200 (819)
T ss_pred hhhhHHHHHHHHHhhhhhhhhhhhhhhccchhhHHH
Confidence 5666666542 11 111 2346677776544
No 313
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=44.82 E-value=4e+02 Score=28.29 Aligned_cols=59 Identities=14% Similarity=0.174 Sum_probs=52.7
Q ss_pred hhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHH
Q 002658 93 PAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLY 151 (896)
Q Consensus 93 ~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~l 151 (896)
...-++.+.+++.+-+.++....|++..++..|-..=.+++...|..+-.++|...+.+
T Consensus 14 ~~aw~~vl~v~s~lf~~lg~~~~~~l~~~L~~l~~lr~~~~f~~~~~~e~~lgaAi~am 72 (198)
T PF08161_consen 14 QHAWPEVLNVLSALFEKLGERSSPLLKPILKTLGDLRESEDFSFRKELEQVLGAAIRAM 72 (198)
T ss_pred HHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHC
Confidence 34567889999999999998899999999999998888888899999999999999988
No 314
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=44.69 E-value=91 Score=31.28 Aligned_cols=73 Identities=12% Similarity=0.152 Sum_probs=54.0
Q ss_pred HhhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCc-hhH-HHHHHHHHHHhc-CCchhhHHHHHHHHHHHHh
Q 002658 163 VGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPV-VAF-QKLCARICKLLS-NQNFMAKASLLPVVGSLSQ 235 (896)
Q Consensus 163 ~~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~a~d~~~-~yL-~~LlPRL~kLLk-s~s~kaK~alL~aIgSLA~ 235 (896)
-...++.|-.-|...|+++|.-|..-|..++.+++.... ++- ..++..|.+++. ..+.++|.-++.+|.+-+.
T Consensus 39 ~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 39 PKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL 114 (142)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence 345677777777778999999999999999999866442 232 246667777775 4677788888888888753
No 315
>PRK14707 hypothetical protein; Provisional
Probab=44.68 E-value=1.2e+03 Score=33.66 Aligned_cols=144 Identities=16% Similarity=0.186 Sum_probs=83.2
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHHHHh-------cCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHH---hccc
Q 002658 44 KILTSLSKLADRDTHQIAIEDLEKTIQ-------TLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCEL---HSEL 113 (896)
Q Consensus 44 rll~~L~KLsDRDT~k~Aa~eLD~La~-------~L~pd~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg---~~d~ 113 (896)
.++..|.|..+....+.|+..|..-+. .|.+..+-+.|+.|. ||+....|..+...+++. +.+.
T Consensus 713 N~LNALSKWP~~~~Cr~AA~~LA~rL~~~p~l~~a~~aQevANaLNALS------KWPd~~~C~~AA~aLA~rLa~~~~L 786 (2710)
T PRK14707 713 NALNALSKWPRTPVCAAVASALAARVVAEPRLRKAFDAQQVATALNALS------KWPDNQACAAAANTLAERQLREPDV 786 (2710)
T ss_pred HHHhhhhcCCCcHHHHHHHHHHHHHHhcChhhhhhcCHHHHHHHHHHhh------cCCCchHHHHHHHHHHHHHhhCcch
Confidence 456677777888888888776655443 244544667777766 455555555555555544 3333
Q ss_pred chhhHHHHHHHHHHhhcC-CChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhc-CCHhHHHHHHHHHHH
Q 002658 114 TSTHVTKIISHIVKRLKD-SDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMME-QNKGVQSGAAMCMAK 191 (896)
Q Consensus 114 I~P~LpkIL~~IlrrLkD-pDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~E-qnk~VQ~gAasALAk 191 (896)
....-++=++..+..|+- |+ ...|..+...|+..+.... .--...-.+=+-..+.+|.- ++..+=..|+.+|+.
T Consensus 787 r~aL~pQ~vAn~LNALSKWPe---~~~Cr~AA~~LA~rLa~dp-~Lr~af~AQ~VANaLNALSKWPd~~~Cr~AA~aLA~ 862 (2710)
T PRK14707 787 RDVLKPREMTNALNALSKWPD---TPACAAAASALAARVADDP-RLREAFDVQHVATVLNAMSKWPDNAVCAAAAGAMAE 862 (2710)
T ss_pred hhhcCHHHHHHHHHHhhcCCC---chHHHHHHHHHHHHHhcCh-hHHHhcCHHHHHHHHHHhccCCCchHHHHHHHHHHH
Confidence 333345667788888754 33 3456666677777774431 00112233345556666642 344455667888887
Q ss_pred HHHhcC
Q 002658 192 MVECAS 197 (896)
Q Consensus 192 IIE~a~ 197 (896)
-+...+
T Consensus 863 RLa~e~ 868 (2710)
T PRK14707 863 RLADEP 868 (2710)
T ss_pred HHhcCh
Confidence 776543
No 316
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.67 E-value=2.5e+02 Score=37.88 Aligned_cols=172 Identities=13% Similarity=0.090 Sum_probs=87.2
Q ss_pred cCCCChhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhhcCCC-----hHHHHHHHHHHHHHHHHHhcccccCCchh
Q 002658 88 SNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSD-----SGMKEACRDSIGSLSKLYLNGKEENNGTV 162 (896)
Q Consensus 88 ~ss~k~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrLkDpD-----s~VR~Ac~~aLG~LA~~li~~~~e~~~~~ 162 (896)
...+.-.+|...+.++-.+.+.+|+.+..-.+.|+..|- .+-|.+ ..|| ..-.++.-++...++.-
T Consensus 851 ~s~~~~evr~~sl~~l~silet~ge~ll~~w~sV~eml~-s~~d~~~ekek~ivr-lgf~~lrlIssDfLqSL------- 921 (1610)
T KOG1848|consen 851 NSSRGVEVRISSLEALVSILETVGEHLLHGWQSVFEMLR-SATDFGSEKEKKIVR-LGFSCLRLISSDFLQSL------- 921 (1610)
T ss_pred hcCccceeeHHHHHHHHHHHhccchhhccccHHHHHHHH-HHhhccchhhhhHHH-hhhhhhhhhhhcchhcC-------
Confidence 456778888888888888999988876443666555433 444443 1222 22223333333332210
Q ss_pred HhhhHHHHHHHHh---cC--CHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcc
Q 002658 163 VGLFVKPLFEAMM---EQ--NKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVG 237 (896)
Q Consensus 163 ~~~lL~pL~eaL~---Eq--nk~VQ~gAasALAkIIE~a~d~~~~yL~~LlPRL~kLLks~s~kaK~alL~aIgSLA~vg 237 (896)
-...+.-|++++. .| +-++--.|..-|=.+-+. |.. |+.....+-.+-..++-+-+ .+.
T Consensus 922 p~sci~~lidtl~~fs~QktdlNISltAi~lfWtvsDf--------l~~------km~S~sed~~~~~~~e~~~s--s~~ 985 (1610)
T KOG1848|consen 922 PTSCILDLIDTLLVFSRQKTDLNISLTAIGLFWTVSDF--------LKN------KMFSTSEDSCAYNSVEDLYS--SMK 985 (1610)
T ss_pred ChHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHH--------HHh------hhhccchhhhhhcchhhhcc--ccc
Confidence 1113334444442 12 223333333333222221 111 22222222222122222222 111
Q ss_pred --ccCcccHHH-HHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcchHHHhh
Q 002658 238 --AIAPQSLEP-LLQSIHECLGSTDWATRKAAADALSALALHSSNLVIDG 284 (896)
Q Consensus 238 --a~~~pyle~-lLp~L~e~LsddDW~lRKaA~EaLgsLA~avGe~L~Py 284 (896)
...+..+-. ++-+|.++..|+-.++|+.||++|-.|..+.|.+|.+-
T Consensus 986 ~~~~l~e~lwi~ll~~L~~~~~dsr~eVRngAvqtlfri~~Shg~~l~~~ 1035 (1610)
T KOG1848|consen 986 SKEILPEVLWIMLLVHLADLCEDSRAEVRNGAVQTLFRIFNSHGSKLGTN 1035 (1610)
T ss_pred chhhhhhHHHHHHHHHHHHHhccchHHHhhhHHHHHHHHHhhhcccCChh
Confidence 223333332 23566677777777899999999999999999988884
No 317
>PF03810 IBN_N: Importin-beta N-terminal domain; InterPro: IPR001494 Karyopherins are a group of proteins involved in transporting molecules through the pores of the nuclear envelope. Karyopherins, which may act as importins or exportins, are part of the Importin-beta super-family, which all share a similar three-dimensional structure. Members of the importin-beta (karyopherin-beta) family can bind and transport cargo by themselves, or can form heterodimers with importin-alpha. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Importin-beta is a helicoidal molecule constructed from 19 HEAT repeats. Many nuclear pore proteins contain FG sequence repeats that can bind to HEAT repeats within importins [, ], which is important for importin-beta mediated transport. Ran GTPase helps to control the unidirectional transfer of cargo. The cytoplasm contains primarily RanGDP and the nucleus RanGTP through the actions of RanGAP and RanGEF, respectively. In the nucleus, RanGTP binds to importin-beta within the importin/cargo complex, causing a conformational change in importin-beta that releases it from importin-alpha-bound cargo. As a result, the N-terminal auto-inhibitory region on importin-alpha is free to loop back and bind to the major NLS-binding site, causing the cargo to be released []. There are additional release factors as well. This entry represents the N-terminal domain of karyopherins that is important for the binding of the Ran protein []. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport; PDB: 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 1IBR_D 1QGR_A 3LWW_A 1F59_A 2Q5D_A ....
Probab=43.50 E-value=1.9e+02 Score=24.84 Aligned_cols=48 Identities=17% Similarity=0.136 Sum_probs=32.6
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhcc
Q 002658 62 IEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSE 112 (896)
Q Consensus 62 a~eLD~La~~L~pd~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d 112 (896)
-+.|..+...= | .+..+|-.|... .+.+..+|..|+..|.+.+..++.
T Consensus 2 E~~L~~~~~~~-p-~~~~~l~~il~~-~~~~~~~R~~A~i~LKn~I~~~W~ 49 (77)
T PF03810_consen 2 EQQLKQFQKQN-P-GFWQYLLQILSS-NSQDPEVRQLAAILLKNLIKKNWS 49 (77)
T ss_dssp HHHHHHHHHSC-T-CHHHHHHHHHHC-TTSCHHHHHHHHHHHHHHHHHSGG
T ss_pred HHHHHHHHHHH-h-hHHHHHHHHHHc-cCCCHHHHHHHHHHHHHHHHHcCc
Confidence 35566666621 5 444444444422 455799999999999999999977
No 318
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=43.23 E-value=6.5e+02 Score=30.08 Aligned_cols=202 Identities=16% Similarity=0.146 Sum_probs=104.2
Q ss_pred ChhhHHHHHHHHHHHHHHhcccchhhH------HHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHhh
Q 002658 92 KPAVKKESVRLLALVCELHSELTSTHV------TKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGL 165 (896)
Q Consensus 92 k~~vRKeAIllLG~IAeg~~d~I~P~L------pkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~ 165 (896)
+..+.+..+.++.-+....+....-++ +......++.|..+|.-|...++..++.|+.+-....+ ......
T Consensus 67 ~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~---~~~l~~ 143 (429)
T cd00256 67 KDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACFGLAKME---GSDLDY 143 (429)
T ss_pred cHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhcCccccc---hhHHHH
Confidence 344555555555555444332221111 11233344466778889999999999999876532111 123334
Q ss_pred hHHHHHHHHhc-CCHhHHHHHHHHHHHHHHhcCCCCchhH-HHHHHHHHHHhcCC--chhhHHHHHHHHHHHH--hcc-c
Q 002658 166 FVKPLFEAMME-QNKGVQSGAAMCMAKMVECASDPPVVAF-QKLCARICKLLSNQ--NFMAKASLLPVVGSLS--QVG-A 238 (896)
Q Consensus 166 lL~pL~eaL~E-qnk~VQ~gAasALAkIIE~a~d~~~~yL-~~LlPRL~kLLks~--s~kaK~alL~aIgSLA--~vg-a 238 (896)
++..|.+.|.. .+...|..|..||+.++..-..-. -+. ..-++.|..+|+.. .++..-.++=||=-+. .-+ .
T Consensus 144 ~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~-~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~ 222 (429)
T cd00256 144 YFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRF-AFVLADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAAE 222 (429)
T ss_pred HHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHH-HHHHccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHHHHH
Confidence 55555555532 245666667799999886421100 011 12456666666542 4454433444433332 111 1
Q ss_pred cCcccHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHHHHhc-----chHHHh-----hHHHHHHHHHhhhcCCC
Q 002658 239 IAPQSLEPLLQSIHECLGST--DWATRKAAADALSALALHS-----SNLVID-----GATSTLTVLEACRFDKI 300 (896)
Q Consensus 239 ~~~pyle~lLp~L~e~Lsdd--DW~lRKaA~EaLgsLA~av-----Ge~L~P-----y~~~~I~~LE~~RfDKv 300 (896)
.+ .+ ..++|.|.+.+... ..-+| .++-+|..+...- ...+.+ -+..+++.|+...+...
T Consensus 223 ~~-~~-~~~i~~l~~i~k~s~KEKvvR-v~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~De 293 (429)
T cd00256 223 VL-KR-LSLIQDLSDILKESTKEKVIR-IVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQRKYDDE 293 (429)
T ss_pred hh-cc-ccHHHHHHHHHHhhhhHHHHH-HHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhcCCCCcH
Confidence 22 12 35888888887763 33344 4455666666542 112222 23556677777777433
No 319
>PF08146 BP28CT: BP28CT (NUC211) domain; InterPro: IPR012954 This C-terminal domain is found in BAP28-like nucleolar proteins []. The bap28 mutation leads to abnormalities in the brain, starting at midsomitogenesis stages. Mutant zebrafish embryos display excessive apoptosis, especially in the central nervous system (CNS) that results in death. The mutation affects a gene that encodes a large protein with high similarity to the uncharacterised human protein BAP28 and lower similarity to yeast Utp10. Utp10 is a component of a nucleolar U3 small nucleolar RNA-containing RNP complex that is required for transcription of ribosomal DNA and for processing of 18 S rRNA. Zebrafish Bap28 is also required for rRNA transcription and processing, with a major effect on 18S rRNA maturation. Bap28 is therefore required for cell survival in the CNS through its role in rRNA synthesis and processing [].
Probab=43.17 E-value=2.4e+02 Score=28.69 Aligned_cols=77 Identities=16% Similarity=0.165 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcC-------CCChhhHHH-HHHHHHHHHHHhcccchhhHHHHHHHHHHh
Q 002658 57 THQIAIEDLEKTIQTLSQESLPMLLNCLYESSN-------DPKPAVKKE-SVRLLALVCELHSELTSTHVTKIISHIVKR 128 (896)
Q Consensus 57 T~k~Aa~eLD~La~~L~pd~Lp~fLs~L~es~s-------s~k~~vRKe-AIllLG~IAeg~~d~I~P~LpkIL~~Ilrr 128 (896)
....+...+-.++-.|+...|-|++..|.+=.. ......|.. -.+++..+++...-.+.||..+++..++..
T Consensus 37 vE~~v~~~~~~lV~KLnE~~FRPlF~~l~dWA~~~l~~~~~~~~~~R~itfy~l~~~l~e~LKslf~~Y~~~ll~~~~~~ 116 (153)
T PF08146_consen 37 VESSVISAFVSLVLKLNEATFRPLFLKLVDWATSGLPKSDSSGSRARLITFYRLLNALAEKLKSLFTPYFSYLLDNAVDL 116 (153)
T ss_pred HHHHHHHHHHHHHHHcccchhHhHHHHHHHHHcccCCcccCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667777788888888789998888876532 222334444 344555556655566899999999998888
Q ss_pred hcCCC
Q 002658 129 LKDSD 133 (896)
Q Consensus 129 LkDpD 133 (896)
|+.-.
T Consensus 117 L~~~~ 121 (153)
T PF08146_consen 117 LKQFN 121 (153)
T ss_pred HHHhh
Confidence 86653
No 320
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=43.04 E-value=6.7e+02 Score=31.46 Aligned_cols=69 Identities=10% Similarity=-0.053 Sum_probs=45.2
Q ss_pred HHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHH
Q 002658 81 LNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLY 151 (896)
Q Consensus 81 Ls~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~l 151 (896)
.+++.....+-.+..|-.|++.|+.-+...++.+..-+ .+.+.=..|.|....||-....++--|+.+.
T Consensus 277 dsvfvsRy~Dv~d~IRv~c~~~L~dwi~lvP~yf~k~~--~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~ 345 (740)
T COG5537 277 DSVFVSRYIDVDDVIRVLCSMSLRDWIGLVPDYFRKIL--GLRYNGWSLSDNHEGVRLLVSKILLFLCSRI 345 (740)
T ss_pred HHHHhhhccchhHHHHHHHHHHHHHHHhcchHHHHhhh--cccccccccccchHHHHHHHHHHHHHHHhcC
Confidence 33444445677788888899888877766665543222 2344556688888888877776666555554
No 321
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=43.02 E-value=74 Score=32.33 Aligned_cols=59 Identities=15% Similarity=0.164 Sum_probs=46.6
Q ss_pred cCCCChhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHH
Q 002658 88 SNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLY 151 (896)
Q Consensus 88 ~ss~k~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~l 151 (896)
..+.+.-.|+.|+..+...... ..++..++..+-..+.|++..||.+.+|+|..++...
T Consensus 114 ~~s~~~~~rR~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~~ 172 (197)
T cd06561 114 AKSENEWVRRAAIVLLLRLIKK-----ETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKKD 172 (197)
T ss_pred HhCCcHHHHHHHHHHHHHHHHh-----cccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhC
Confidence 4566777888877666444432 4568888999999999999999999999999988875
No 322
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=43.00 E-value=21 Score=36.78 Aligned_cols=60 Identities=13% Similarity=0.150 Sum_probs=43.9
Q ss_pred hhcCCCChhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHH
Q 002658 86 ESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLY 151 (896)
Q Consensus 86 es~ss~k~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~l 151 (896)
.-..+.+.-+|+.++.++-..+. ..+++.++..+...+.|++..||.+.+|+|..++..-
T Consensus 127 ~W~~s~~~w~rR~~~v~~~~~~~------~~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~ 186 (213)
T PF08713_consen 127 KWAKSDNEWVRRAAIVMLLRYIR------KEDFDELLEIIEALLKDEEYYVQKAIGWALREIGKKD 186 (213)
T ss_dssp HHHHCSSHHHHHHHHHCTTTHGG------GCHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-
T ss_pred HHHhCCcHHHHHHHHHHHHHHHH------hcCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhC
Confidence 33467777888887766522222 2778889999999999999999999999998776554
No 323
>PF14961 BROMI: Broad-minded protein
Probab=42.22 E-value=3.7e+02 Score=36.00 Aligned_cols=67 Identities=15% Similarity=0.271 Sum_probs=48.2
Q ss_pred HHHHHhhhcCCCCh-hhHHHHHHHHHHHHHHhccc--chhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHH
Q 002658 80 LLNCLYESSNDPKP-AVKKESVRLLALVCELHSEL--TSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSK 149 (896)
Q Consensus 80 fLs~L~es~ss~k~-~vRKeAIllLG~IAeg~~d~--I~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~ 149 (896)
-+.+|.+.++-.+| .+|.+|+..| +...... -.++++.+...+...|.|||+.+.+.+....+.+..
T Consensus 162 ~lq~i~d~ld~~~P~evR~eAlq~L---c~~p~SDVls~E~W~~L~~~L~~~LsDpD~~is~~~L~f~Ak~fs 231 (1296)
T PF14961_consen 162 QLQLIADKLDPGQPKEVRLEALQIL---CSAPPSDVLSCESWSVLRENLTDALSDPDPEISDASLRFHAKMFS 231 (1296)
T ss_pred HHHHHHHhcCCCCchHHHHHHHHHH---hcCChhhccccccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcc
Confidence 35777777654444 4888877665 4444433 267899999999999999999999988876554433
No 324
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=42.10 E-value=1.3e+02 Score=40.42 Aligned_cols=99 Identities=17% Similarity=0.105 Sum_probs=69.6
Q ss_pred HHhcCCchhhHHHHHHHHHHHHhcc--ccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcchHHHhhHHHHHH
Q 002658 213 KLLSNQNFMAKASLLPVVGSLSQVG--AIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSSNLVIDGATSTLT 290 (896)
Q Consensus 213 kLLks~s~kaK~alL~aIgSLA~vg--a~~~pyle~lLp~L~e~LsddDW~lRKaA~EaLgsLA~avGe~L~Py~~~~I~ 290 (896)
+-|.-.+.+.|.-+|..++.++... ......++.......++..|.+..+|-+..+.+..+...++..++||+..+|.
T Consensus 48 kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk~lsp~LK~li~ 127 (1312)
T KOG0803|consen 48 KKLLKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKKKLSPFLKSLIP 127 (1312)
T ss_pred HHHhccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhh
Confidence 3333345666666677777776422 11111122222233446778999999999999999999999999999999999
Q ss_pred HHHhhhcCCChhhHHHHHHHH
Q 002658 291 VLEACRFDKIKPVRDSMNEAL 311 (896)
Q Consensus 291 ~LE~~RfDKvKpVRDaA~eAL 311 (896)
.....++|-.-+|-.+|-.++
T Consensus 128 ~wl~~~~d~~~~vs~aa~~sf 148 (1312)
T KOG0803|consen 128 PWLGGQFDLDYPVSEAAKASF 148 (1312)
T ss_pred hhhheecccchHHHHHHHHHH
Confidence 999999998887666644433
No 325
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=41.84 E-value=31 Score=27.68 Aligned_cols=26 Identities=27% Similarity=0.288 Sum_probs=22.3
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHH
Q 002658 245 EPLLQSIHECLGSTDWATRKAAADAL 270 (896)
Q Consensus 245 e~lLp~L~e~LsddDW~lRKaA~EaL 270 (896)
+.++..+...|.|++..+|++|++.|
T Consensus 17 ~~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 17 SDVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHC
Confidence 37778888899999999999999874
No 326
>KOG3613 consensus Dopey and related predicted leucine zipper transcription factors [Transcription]
Probab=40.56 E-value=4.9e+02 Score=36.09 Aligned_cols=175 Identities=16% Similarity=0.117 Sum_probs=106.0
Q ss_pred hhhHHHHHHHHHHhhcCCC---hHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhcCCHhHHHHHHH-HHH
Q 002658 115 STHVTKIISHIVKRLKDSD---SGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAM-CMA 190 (896)
Q Consensus 115 ~P~LpkIL~~IlrrLkDpD---s~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAas-ALA 190 (896)
.|-+..|..+|..-|+... ...-.||...++.|+.+-.. ...|. +-.+|.+.++..--..+.|. -+.
T Consensus 1392 ~~lls~v~~~ItPylk~~sa~nap~~~a~~~LLasLSgy~y~------rkaWr---Ke~~eLF~D~~fFqmd~s~l~~W~ 1462 (1749)
T KOG3613|consen 1392 VPLLSIVNYNITPYLKNHSARNAPLFRAGLQLLASLSGYQYT------RKAWR---KEFLELFLDNSFFQMDLSCLRHWS 1462 (1749)
T ss_pred hhHHHHHHHhhhHHhccccccccchHHHHHHHHHHHhcCchh------HHHHH---HHHHHHhcCcchheeeHHHHHHHH
Confidence 3444445555555555432 23344555556555554321 12233 22344444444443445555 568
Q ss_pred HHHHhcCCCCchhHHHHHHHH-------HHHhcCC--chhhHHHHHHHHHHHHhcc--ccCcccHHHHHHHHHHhhC-CC
Q 002658 191 KMVECASDPPVVAFQKLCARI-------CKLLSNQ--NFMAKASLLPVVGSLSQVG--AIAPQSLEPLLQSIHECLG-ST 258 (896)
Q Consensus 191 kIIE~a~d~~~~yL~~LlPRL-------~kLLks~--s~kaK~alL~aIgSLA~vg--a~~~pyle~lLp~L~e~Ls-dd 258 (896)
.|++..-.-+...++.||-|+ +.++.+. -+..|+.+|-=|.-++-.+ +.+..|+..+.-.|.+.|. +.
T Consensus 1463 ~Iid~lmt~d~t~f~DLm~ri~~s~s~s~~lftSrd~e~e~ra~~LkRiaf~ifsSp~Dqy~~~lp~iqErl~~~Lrv~~ 1542 (1749)
T KOG3613|consen 1463 SIIDHLMTHDKTIFNDLMTRISSSQSGSLNLFTSRDQELEQRAMLLKRIAFLIFSSPLDQYLGYLPDIQERLADLLRVSQ 1542 (1749)
T ss_pred HHHHHHHhCCchHHHHHHHHhhcccccceeeeecchHHHHHHHHHHHhhHhheeeCcHHhhhhhchhHHHHHHHhcccCC
Confidence 888875333445788898883 3344332 3556777777776664333 6788899999999999888 78
Q ss_pred CHHHHHHHHHHHHHHHHhcc-hHHHhhH----HHHHHHHHhhhcC
Q 002658 259 DWATRKAAADALSALALHSS-NLVIDGA----TSTLTVLEACRFD 298 (896)
Q Consensus 259 DW~lRKaA~EaLgsLA~avG-e~L~Py~----~~~I~~LE~~RfD 298 (896)
+.-+|+++.=++-.++..+. +.|.++- ...+.+++..-+|
T Consensus 1543 ~~~lk~~vFL~~RVLLLR~Sp~hL~~LWPImv~ELv~vf~q~eq~ 1587 (1749)
T KOG3613|consen 1543 SPKLKKAVFLFFRVLLLRISPDHLTSLWPIMVYELVQVFLQLEQD 1587 (1749)
T ss_pred CchHHHHHHHHHHHHHHhcCHhhcccchHHHHHHHHHHHHHHHhh
Confidence 89999999999998887777 7777763 3445555544444
No 327
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=40.03 E-value=3.3e+02 Score=25.70 Aligned_cols=85 Identities=15% Similarity=0.177 Sum_probs=56.9
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhh---------cCC
Q 002658 62 IEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRL---------KDS 132 (896)
Q Consensus 62 a~eLD~La~~L~pd~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrL---------kDp 132 (896)
..+|-.++.. .++....++.+|...+.+.+|.+.--++.+|..++.-|++.+..++..-. ++...+ .+.
T Consensus 21 i~~i~d~~~~-~~~~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~-~~~~l~~~~~~~~~~~~~ 98 (115)
T cd00197 21 IMEICDLINE-TNVGPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASND-FAVELLKFDKSKLLGDDV 98 (115)
T ss_pred HHHHHHHHHC-CCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhH-HHHHHHHhhccccccCCC
Confidence 3334444432 24457778888888888889999999999999999999977655443321 233322 245
Q ss_pred ChHHHHHHHHHHHHHH
Q 002658 133 DSGMKEACRDSIGSLS 148 (896)
Q Consensus 133 Ds~VR~Ac~~aLG~LA 148 (896)
+..||.-+...+..++
T Consensus 99 ~~~Vr~k~~~l~~~w~ 114 (115)
T cd00197 99 STNVREKAIELVQLWA 114 (115)
T ss_pred ChHHHHHHHHHHHHHh
Confidence 6788888877766543
No 328
>PF11640 TAN: Telomere-length maintenance and DNA damage repair; InterPro: IPR021668 ATM is a large protein kinase, in humans, critical for responding to DNA double-strand breaks (DSBs). Tel1, the orthologue from budding yeast, also regulates responses to DSBs. Tel1 is important for maintaining viability and for phosphorylation of the DNA damage signal transducer kinase Rad53 (an orthologue of mammalian CHK2). In addition to functioning in the response to DSBs, numerous findings indicate that Tel1/ATM regulates telomeres. The overall domain structure of Tel1/ATM is shared by proteins of the phosphatidylinositol 3-kinase (PI3K)-related kinase (PIKK) family, but this family carries a unique and functionally important TAN sequence motif, near its N-terminal, LxxxKxxE/DRxxxL. which is conserved specifically in the Tel1/ATM subclass of the PIKKs. The TAN motif is essential for both telomere length maintenance and Tel1 action in response to DNA damage []. It is classified as an 2.7.11.1 from EC. ; GO: 0004674 protein serine/threonine kinase activity
Probab=39.81 E-value=2.8e+02 Score=27.91 Aligned_cols=106 Identities=20% Similarity=0.271 Sum_probs=65.5
Q ss_pred HHHHHcC-CChh-HHHHHHHHHHHHHh------cCCCCCHHHHHHHHhhhc--------CCCC---hh-----hHH-HHH
Q 002658 46 LTSLSKL-ADRD-THQIAIEDLEKTIQ------TLSQESLPMLLNCLYESS--------NDPK---PA-----VKK-ESV 100 (896)
Q Consensus 46 l~~L~KL-sDRD-T~k~Aa~eLD~La~------~L~pd~Lp~fLs~L~es~--------ss~k---~~-----vRK-eAI 100 (896)
..++..| +|.- .|+-|+++|..+.. .++...+..++.+|+... ...+ +. .|- .|.
T Consensus 7 ~~~~~~L~S~k~keR~~al~~L~~il~~~~~~~~l~~k~~~~ifeaL~~~i~~Ek~~y~~~~~~~~s~~~~~~~RL~~~a 86 (155)
T PF11640_consen 7 NSILRLLSSDKIKERNKALEDLRHILSSPPRVDSLNDKQWHSIFEALFRCIEKEKEAYSRKKSSSASTATTAESRLSSCA 86 (155)
T ss_pred HHHHHHHhccccchHHHHHHHHHHHHcCccccccCCcchHHHHHHHHHHHHHHHHHHHhcCCCcccchHHHHHHHHHHHH
Confidence 3455555 2322 56788999998884 344445555555555442 1111 11 122 266
Q ss_pred HHHHHHHHHhcccc-hhhHHHHHHHHHHhhcCCC-hHHHHHHHHHHHHHHHHH
Q 002658 101 RLLALVCELHSELT-STHVTKIISHIVKRLKDSD-SGMKEACRDSIGSLSKLY 151 (896)
Q Consensus 101 llLG~IAeg~~d~I-~P~LpkIL~~IlrrLkDpD-s~VR~Ac~~aLG~LA~~l 151 (896)
.+|-.+++.+...+ ...+..|+.+|...|.+|+ ..+.-.+.+-+-.|...+
T Consensus 87 ~~lR~~ve~~~~~~k~kt~~~Ll~hI~~~l~~~~~~~~~p~~~Dy~k~L~~iL 139 (155)
T PF11640_consen 87 SALRLFVEKSNSRLKRKTVKALLDHITDLLPDPDDSLLEPLSLDYSKILKAIL 139 (155)
T ss_pred HHHHHHHHHHHhhcccchHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHH
Confidence 67777777666665 5578899999999999998 566666666666663333
No 329
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5.
Probab=39.64 E-value=44 Score=31.33 Aligned_cols=57 Identities=28% Similarity=0.261 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHhcchHHHhhHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHhc
Q 002658 261 ATRKAAADALSALALHSSNLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQLWKKIA 318 (896)
Q Consensus 261 ~lRKaA~EaLgsLA~avGe~L~Py~~~~I~~LE~~RfDKvKpVRDaA~eALe~WK~la 318 (896)
..|-+++-.|+++..+.+-.+-|+++.+|..|-.+..| ..+|+..+-++|.=|+.--
T Consensus 4 ~~rH~~VLGL~Alv~a~Py~vP~w~P~~l~~La~~~~~-~~~I~~tvk~tl~eFkrtH 60 (90)
T PF11919_consen 4 RRRHAAVLGLSALVLAFPYDVPPWMPEVLEELARHAND-PQPIRTTVKKTLSEFKRTH 60 (90)
T ss_dssp HHHHHHHHHHHHHHTT-S--SS-HHHHHHHHHHTTSSS--SSHHHHTHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHhCC-CchHHHHHHHHHHHHHHhC
Confidence 35778888999999999988888999999998877776 7779999988887666543
No 330
>KOG2020 consensus Nuclear transport receptor CRM1/MSN5 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=39.12 E-value=1.1e+03 Score=31.49 Aligned_cols=201 Identities=13% Similarity=0.084 Sum_probs=96.9
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHHHHhc----CCCCC---HHHHHHHHhhhcCCCCh--hhHHHHHHHHHHH-HHHhcc
Q 002658 43 QKILTSLSKLADRDTHQIAIEDLEKTIQT----LSQES---LPMLLNCLYESSNDPKP--AVKKESVRLLALV-CELHSE 112 (896)
Q Consensus 43 ~rll~~L~KLsDRDT~k~Aa~eLD~La~~----L~pd~---Lp~fLs~L~es~ss~k~--~vRKeAIllLG~I-Aeg~~d 112 (896)
.++..+|.......++..|++-||.++.. ++.+. +-.|.--+......... ...+..+..|..+ ++....
T Consensus 47 ~~~~~iL~~s~~~~~k~f~Lqlle~vik~~W~~~~~~~r~glk~~v~~~~~~~~~~~~~~~~~~~~~~kL~~i~Vqi~K~ 126 (1041)
T KOG2020|consen 47 LQVYLILKLSTNPILKYFALQLLENVIKFRWNSLPVEERVGLKNYVLTLIIEASPDEDVSETEKHLLNKLNLILVQIVKR 126 (1041)
T ss_pred HHHHHHHhccCCchhheeeHHHHHHHHHHhcccCCccccHHHHHHHHHHHhhcCCcHhHHHHHHHHHHHHhHHHHHHHHH
Confidence 34445555555566777777777777754 23222 33333333222222221 1233333333222 333333
Q ss_pred cchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHH----HH---------hcCCH
Q 002658 113 LTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFE----AM---------MEQNK 179 (896)
Q Consensus 113 ~I~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~e----aL---------~Eqnk 179 (896)
.-..++|..++-+...++ ....++.-+...+-.|++.+...........-..+++.+++ .+ ..+..
T Consensus 127 eWp~~wp~~i~dl~~~s~-~s~~~~el~m~Il~lLsEdvf~~ss~~~~q~~~~il~~~~~~~f~~i~~l~~~~~~~a~~~ 205 (1041)
T KOG2020|consen 127 EWPAIWPTFIPDLAQSSK-TSETVCELSMIILLLLSEEVFDFSSSELTQQKIIILKNLLENEFQQIFTLCSYIKEKANSE 205 (1041)
T ss_pred HHHhhcchhhhhHHHHhh-cCcccchHHHHHHHHHHHHHhcccchHHHhhhHHHHHHHhhHHHHHHHHHHHHHHhhhhhH
Confidence 334455555555666555 45567777778888888888653211111111222222222 11 12233
Q ss_pred hHHHHHHHHHHHHHHhcCCCCchh---HHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcc-c----cCcccHHHHHHH
Q 002658 180 GVQSGAAMCMAKMVECASDPPVVA---FQKLCARICKLLSNQNFMAKASLLPVVGSLSQVG-A----IAPQSLEPLLQS 250 (896)
Q Consensus 180 ~VQ~gAasALAkIIE~a~d~~~~y---L~~LlPRL~kLLks~s~kaK~alL~aIgSLA~vg-a----~~~pyle~lLp~ 250 (896)
+-.+....|+.+++..+- .| .+-+..-+...++.+- .|..++.|+..++..+ . .+.+++..++-.
T Consensus 206 -~~~atl~tl~~fl~wip~---~~I~~tn~l~~~l~~~ln~~~--~r~~al~CL~ei~s~~~~~~~~~~~~~~~~~~~~ 278 (1041)
T KOG2020|consen 206 -LLSATLETLLRFLEWIPL---GYIFETNILELLLNKFLNAPE--LRNNALSCLTELLSRKRSIYERKTVPMFNLTIYQ 278 (1041)
T ss_pred -HHHHHHHHHHHHhhcccH---HHHHHhhhHHHHHHhccchHH--HHHHHHHHHHHHHhccccchhHHhHHHHHHHHHH
Confidence 666677777777775432 22 1113333333334333 4568888988887543 1 234555555544
No 331
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.07 E-value=1.2e+02 Score=34.73 Aligned_cols=110 Identities=17% Similarity=0.156 Sum_probs=72.6
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhccccCcccHHH
Q 002658 167 VKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEP 246 (896)
Q Consensus 167 L~pL~eaL~Eqnk~VQ~gAasALAkIIE~a~d~~~~yL~~LlPRL~kLLks~s~kaK~alL~aIgSLA~vga~~~pyle~ 246 (896)
+.-|++.|...+|.|+.+|..-|-.+.-.-......|-..+++-+.++++.... ++.++-.+++ +++....-.-.+..
T Consensus 5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~~~~~~~~~~~~~lk~l~qL~~~~~~-~~~a~~alVn-lsq~~~l~~~ll~~ 82 (353)
T KOG2973|consen 5 LVELVELLHSLSPPVRKAAVEHLLGLTGRGLQSLSKYSEALLKDLTQLLKDLDP-AEPAATALVN-LSQKEELRKKLLQD 82 (353)
T ss_pred HHHHHHHhccCChHHHHHHHHHHhhccccchhhhccchhhhHHHHHHHccCccc-ccHHHHHHHH-HHhhHHHHHHHHHH
Confidence 446778888999999999887777766542222234556788888999887544 4444333333 23211111223334
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcc
Q 002658 247 LLQSIHECLGSTDWATRKAAADALSALALHSS 278 (896)
Q Consensus 247 lLp~L~e~LsddDW~lRKaA~EaLgsLA~avG 278 (896)
++..|+..+.++.|.+=+..|-.|..++.--+
T Consensus 83 ~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~ 114 (353)
T KOG2973|consen 83 LLKVLMDMLTDPQSPLADLICMLLSNLSRDDD 114 (353)
T ss_pred HHHHHHHHhcCcccchHHHHHHHHHHhccCch
Confidence 77888888999989988888888888876554
No 332
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=39.02 E-value=3.9e+02 Score=33.56 Aligned_cols=96 Identities=10% Similarity=0.124 Sum_probs=64.7
Q ss_pred hhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHH-hcCCHhHHHHHHHHHHHHH
Q 002658 115 STHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAM-MEQNKGVQSGAAMCMAKMV 193 (896)
Q Consensus 115 ~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL-~Eqnk~VQ~gAasALAkII 193 (896)
.||=..++..|-..|..+ .-|-.+...++.|+..= +..-..-.-..+++-|+.+| .|.+..+-..|..||..++
T Consensus 65 ~P~~K~~~~~l~~~~~~~--~~Rl~~L~Ll~~~v~~q---p~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlL 139 (668)
T PF04388_consen 65 EPHDKHLFDKLNDYFVKP--SYRLQALTLLGHFVRSQ---PPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLL 139 (668)
T ss_pred CccHHHHHHHHHHHHcCc--hhHHHHHHHHHHHHhcC---CchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHh
Confidence 344455566666777655 46666666666665532 10000001224677777777 5889999999999999999
Q ss_pred HhcCCCCchhHHHHHHHHHHHh
Q 002658 194 ECASDPPVVAFQKLCARICKLL 215 (896)
Q Consensus 194 E~a~d~~~~yL~~LlPRL~kLL 215 (896)
=-.+....+||+.|+.-+..++
T Consensus 140 P~ip~~l~~~L~~Lf~If~Rl~ 161 (668)
T PF04388_consen 140 PHIPSSLGPHLPDLFNIFGRLL 161 (668)
T ss_pred ccccchhhHHHHHHHHHHHHHH
Confidence 8777777789998888888887
No 333
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=38.89 E-value=2.7e+02 Score=28.93 Aligned_cols=96 Identities=10% Similarity=0.089 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhc--CCHhHHHHHHHHHHHHHHhcCCCCchhHHH-HHHHHHHH
Q 002658 138 EACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMME--QNKGVQSGAAMCMAKMVECASDPPVVAFQK-LCARICKL 214 (896)
Q Consensus 138 ~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~E--qnk~VQ~gAasALAkIIE~a~d~~~~yL~~-LlPRL~kL 214 (896)
++-+.++.++.+-+ +++.-.=+..-+.|++.+...+.. .+..++..|..=|..++.+.+..-...-.+ -+++|+..
T Consensus 32 ~~La~~L~af~eLM-eHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaILEs~Vl~S~~ly~~V~~evt~~~Li~h 110 (160)
T PF11841_consen 32 EILAYALTAFVELM-EHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAILESIVLNSPKLYQLVEQEVTLESLIRH 110 (160)
T ss_pred HHHHHHHHHHHHHH-hcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHHHHHHhCCHHHHHHHhccCCHHHHHHH
Confidence 44455556666655 332101112234456666666632 267888888888888888653321111111 36888888
Q ss_pred hcCCchhhHHHHHHHHHHHH
Q 002658 215 LSNQNFMAKASLLPVVGSLS 234 (896)
Q Consensus 215 Lks~s~kaK~alL~aIgSLA 234 (896)
|+..+..+...++.+|+++.
T Consensus 111 Lq~~~~~iq~naiaLinAL~ 130 (160)
T PF11841_consen 111 LQVSNQEIQTNAIALINALF 130 (160)
T ss_pred HHcCCHHHHHHHHHHHHHHH
Confidence 98888888888888888885
No 334
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=38.70 E-value=7.8e+02 Score=34.12 Aligned_cols=50 Identities=24% Similarity=0.199 Sum_probs=29.7
Q ss_pred HHHHHHHHHhccccCcccH-----HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcc
Q 002658 226 LLPVVGSLSQVGAIAPQSL-----EPLLQSIHECLGSTDWATRKAAADALSALALHSS 278 (896)
Q Consensus 226 lL~aIgSLA~vga~~~pyl-----e~lLp~L~e~LsddDW~lRKaA~EaLgsLA~avG 278 (896)
+|.-+.+++.+ ..+|- -.+|+.|++.|++....+=--+|-+|-.|-.--+
T Consensus 508 ILRNVSS~IAt---~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p 562 (2195)
T KOG2122|consen 508 ILRNVSSLIAT---CEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSP 562 (2195)
T ss_pred HHHHHHhHhhc---cchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcCCH
Confidence 44455665543 23341 1467778888888776665566666666655544
No 335
>PF08146 BP28CT: BP28CT (NUC211) domain; InterPro: IPR012954 This C-terminal domain is found in BAP28-like nucleolar proteins []. The bap28 mutation leads to abnormalities in the brain, starting at midsomitogenesis stages. Mutant zebrafish embryos display excessive apoptosis, especially in the central nervous system (CNS) that results in death. The mutation affects a gene that encodes a large protein with high similarity to the uncharacterised human protein BAP28 and lower similarity to yeast Utp10. Utp10 is a component of a nucleolar U3 small nucleolar RNA-containing RNP complex that is required for transcription of ribosomal DNA and for processing of 18 S rRNA. Zebrafish Bap28 is also required for rRNA transcription and processing, with a major effect on 18S rRNA maturation. Bap28 is therefore required for cell survival in the CNS through its role in rRNA synthesis and processing [].
Probab=38.64 E-value=2.1e+02 Score=29.10 Aligned_cols=115 Identities=16% Similarity=0.180 Sum_probs=74.0
Q ss_pred hHhhhHHHHHHHHh---cC--------CHhHHHHHHHHHHHHHHhcCC-CCchhHHHHHHHHHHHhcC---CchhhH-HH
Q 002658 162 VVGLFVKPLFEAMM---EQ--------NKGVQSGAAMCMAKMVECASD-PPVVAFQKLCARICKLLSN---QNFMAK-AS 225 (896)
Q Consensus 162 ~~~~lL~pL~eaL~---Eq--------nk~VQ~gAasALAkIIE~a~d-~~~~yL~~LlPRL~kLLks---~s~kaK-~a 225 (896)
+.+.+..-++.+|. .+ -..+...+..|+-+++--..+ ...|.+-+|+..-..-+.. .....| ..
T Consensus 7 ~~~~l~~~~l~ald~R~~~~~~~~~~~v~~vE~~v~~~~~~lV~KLnE~~FRPlF~~l~dWA~~~l~~~~~~~~~~R~it 86 (153)
T PF08146_consen 7 NSPQLFDFFLQALDFRRQQRSKFDLEDVDEVESSVISAFVSLVLKLNEATFRPLFLKLVDWATSGLPKSDSSGSRARLIT 86 (153)
T ss_pred hHHHHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHHHHHHHHHcccchhHhHHHHHHHHHcccCCcccCcCchhHHHH
Confidence 34556666666663 11 124555677787777776544 4457777777776653322 122233 36
Q ss_pred HHHHHHHHHh-ccccCcccHHHHHHHHHHhhCCC------C----HHHHHHHHHHHHHHHHh
Q 002658 226 LLPVVGSLSQ-VGAIAPQSLEPLLQSIHECLGST------D----WATRKAAADALSALALH 276 (896)
Q Consensus 226 lL~aIgSLA~-vga~~~pyle~lLp~L~e~Lsdd------D----W~lRKaA~EaLgsLA~a 276 (896)
.+..+..++. ...++.||+..++....+.|... + |.++..++.+|.....+
T Consensus 87 fy~l~~~l~e~LKslf~~Y~~~ll~~~~~~L~~~~~~~~~~~~~~~~L~~~vL~~L~~~F~~ 148 (153)
T PF08146_consen 87 FYRLLNALAEKLKSLFTPYFSYLLDNAVDLLKQFNSSKTESKSKSWELWRLVLSTLQKCFLH 148 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHHHhh
Confidence 7777888764 34688999999998877776542 3 89999999988876544
No 336
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=38.47 E-value=6.8e+02 Score=29.84 Aligned_cols=64 Identities=14% Similarity=0.343 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHhcCCC---CCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhhc
Q 002658 57 THQIAIEDLEKTIQTLSQ---ESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLK 130 (896)
Q Consensus 57 T~k~Aa~eLD~La~~L~p---d~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrLk 130 (896)
..+.|.+-+-++-..+|. +.|+..|.+. .+.+-.+|+.||+-|-..|.+ ..+++|.+.+.+.|.
T Consensus 40 ~k~lasq~ip~~fk~fp~la~~a~da~~d~~----ed~d~~ir~qaik~lp~fc~~------d~~~rv~d~l~qLLn 106 (460)
T KOG2213|consen 40 EKRLASQFIPRFFKHFPSLADEAIDAQLDLC----EDDDVGIRRQAIKGLPLFCKG------DALSRVNDVLVQLLN 106 (460)
T ss_pred HHHHHHHHHHHHHhhCchhhhHHHHhhhccc----cccchhhHHHHHhccchhccC------chhhhhHHHHHHHHH
Confidence 455555555555555431 2244444444 366789999999999888776 566777777777776
No 337
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=37.93 E-value=2.1e+02 Score=34.33 Aligned_cols=70 Identities=14% Similarity=0.180 Sum_probs=53.8
Q ss_pred HHHHHhhhcCCCChhhHHHHHHHHHHHHHH---hcccc-hhhHHHHHHHHHH-hhcCCChHHHHHHHHHHHHHHH
Q 002658 80 LLNCLYESSNDPKPAVKKESVRLLALVCEL---HSELT-STHVTKIISHIVK-RLKDSDSGMKEACRDSIGSLSK 149 (896)
Q Consensus 80 fLs~L~es~ss~k~~vRKeAIllLG~IAeg---~~d~I-~P~LpkIL~~Ilr-rLkDpDs~VR~Ac~~aLG~LA~ 149 (896)
||..+.+-+.+.+...--.+.+++|+.++. |...+ ..++.+++..+.+ .--|-+-.+.+||+.++..|+-
T Consensus 316 ~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~I 390 (604)
T KOG4500|consen 316 FLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMI 390 (604)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccc
Confidence 666666666677777788899999999985 33333 4578999998888 5677788889999999887753
No 338
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=37.81 E-value=1.3e+02 Score=30.28 Aligned_cols=72 Identities=13% Similarity=0.076 Sum_probs=50.9
Q ss_pred hhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCc-hhH-HHHHHHHHHHhc------CCchhhHHHHHHHHHHHHh
Q 002658 164 GLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPV-VAF-QKLCARICKLLS------NQNFMAKASLLPVVGSLSQ 235 (896)
Q Consensus 164 ~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~a~d~~~-~yL-~~LlPRL~kLLk------s~s~kaK~alL~aIgSLA~ 235 (896)
...++.|...|...|+++|.-|...|..++++++..+. +.- ...+..|.+++. ..+..+|.-+|.+|..-+.
T Consensus 37 k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (139)
T cd03567 37 QLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL 116 (139)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 45666777777788999999999999999999876542 211 123444566664 2466788888888887753
No 339
>COG5543 Uncharacterized conserved protein [Function unknown]
Probab=37.63 E-value=5.5e+02 Score=33.61 Aligned_cols=176 Identities=14% Similarity=0.169 Sum_probs=102.6
Q ss_pred hhhHHHHHHHHHHHHHHhc--ccchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHH
Q 002658 93 PAVKKESVRLLALVCELHS--ELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPL 170 (896)
Q Consensus 93 ~~vRKeAIllLG~IAeg~~--d~I~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL 170 (896)
|..=|+|-.+|..+...++ ..-..+...++-+.+..+++.-. -..+.--|-..++++..+-.+.-.+.+.+.+
T Consensus 653 wR~~KE~ssll~~~l~k~~~T~~~l~~~g~L~~v~L~~IrH~Ga-----f~~V~p~l~~~c~~C~~ef~e~~~~~L~k~~ 727 (1400)
T COG5543 653 WRNMKECSSLLCGMLLKYPLTRGNLALSGRLVQVLLSHIRHLGA-----FLQVSPYLNMVCKRCNMEFEEDELLELVKVS 727 (1400)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHhccch-----HHHHhHHHHHHHHHhcccCcccchHHHHHHH
Confidence 5555666666666655433 22344566666666666654331 1122222233333221111111122233333
Q ss_pred HHHHhcCCHhHH---HHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchh-------hHHHHHHHHHHHHhcc---
Q 002658 171 FEAMMEQNKGVQ---SGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFM-------AKASLLPVVGSLSQVG--- 237 (896)
Q Consensus 171 ~eaL~Eqnk~VQ---~gAasALAkIIE~a~d~~~~yL~~LlPRL~kLLks~s~k-------aK~alL~aIgSLA~vg--- 237 (896)
+... +..+.+- .|.=.-+++++-...+.-.+.|++.+-+|+.+.+.|-.+ .+..++.+|.+|+.-+
T Consensus 728 ~~~~-ek~~~ItRRSGGiPll~tsIL~A~~~K~~~Lle~t~~~Ll~~a~~p~~~~~~eFDLpqVha~N~l~~If~e~~Ls 806 (1400)
T COG5543 728 FNRI-EKCKAITRRSGGIPLLFTSILRAEVTKYPSLLERTLKRLLELAETPESSHQDEFDLPQVHALNILSRIFEEGCLS 806 (1400)
T ss_pred HHHH-HHhhHHHhcCCCcchhHHHHHHhcccccchHHHHHHHHHHHHHhCCCCcccccccchhhHHHHHHHHHHhccccc
Confidence 2222 2222211 123334455555444444567999999999999988655 5678999999987544
Q ss_pred ccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 002658 238 AIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALA 274 (896)
Q Consensus 238 a~~~pyle~lLp~L~e~LsddDW~lRKaA~EaLgsLA 274 (896)
...+.|++..+..-+.+..++=|++|--.+..+.++.
T Consensus 807 s~~~~~ieea~~La~~~f~~~lWaiRNcsImLFT~Lv 843 (1400)
T COG5543 807 SKLPLQIEEAFGLAFKCFRSNLWAIRNCSIMLFTNLV 843 (1400)
T ss_pred cccHHHHHHHHHHHHhccccceeeecccchHHHHHHH
Confidence 3468899999999999999999999998888887754
No 340
>PF14837 INTS5_N: Integrator complex subunit 5 N-terminus
Probab=37.36 E-value=5.8e+02 Score=27.79 Aligned_cols=19 Identities=11% Similarity=0.270 Sum_probs=14.4
Q ss_pred cCcccHHHHHHHHHHhhCC
Q 002658 239 IAPQSLEPLLQSIHECLGS 257 (896)
Q Consensus 239 ~~~pyle~lLp~L~e~Lsd 257 (896)
...|||+|++..+-.++..
T Consensus 178 ~hsphFDWVvahigs~FP~ 196 (213)
T PF14837_consen 178 QHSPHFDWVVAHIGSCFPG 196 (213)
T ss_pred ccCCchhhhHHHHHhhCcH
Confidence 4578999998887777664
No 341
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=37.04 E-value=9.6e+02 Score=30.23 Aligned_cols=114 Identities=13% Similarity=0.060 Sum_probs=67.8
Q ss_pred hHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhccccCcccH-HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcchHH
Q 002658 203 AFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSL-EPLLQSIHECLGSTDWATRKAAADALSALALHSSNLV 281 (896)
Q Consensus 203 yL~~LlPRL~kLLks~s~kaK~alL~aIgSLA~vga~~~pyl-e~lLp~L~e~LsddDW~lRKaA~EaLgsLA~avGe~L 281 (896)
+.+.|-..+...+.+.+...=..+|.++..++++. .+.+-- ..-+..-.......--.++...+++|+.++...++.+
T Consensus 438 ~~~~lW~~l~~~~~~~~~~la~~lL~~~~~l~~l~-~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~il~rls~~~~~~L 516 (727)
T PF12726_consen 438 ISPNLWKALLKSLDSDNPDLAKALLKSLSPLIGLE-KFPPKKEKDELDPAKTQFNKSLGQITDLISQILERLSDFDPSHL 516 (727)
T ss_pred hhHHHHHHHHHhhcCCChHHHHHHHHHHHHhcccc-ccCCcccccCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 56667777777777665553335555555554333 111111 0000111111111123466777788888888877766
Q ss_pred HhhHH--HHHHHHHhhhcCCChhhHHHHHHHHHHHHHhccC
Q 002658 282 IDGAT--STLTVLEACRFDKIKPVRDSMNEALQLWKKIAGK 320 (896)
Q Consensus 282 ~Py~~--~~I~~LE~~RfDKvKpVRDaA~eALe~WK~la~~ 320 (896)
...+. .++..+-.|-|.....++++ |.++.|.+-|+
T Consensus 517 ~~l~~d~~~~~~i~s~lfsp~~~l~qa---A~~llk~~~d~ 554 (727)
T PF12726_consen 517 KELLSDPDAAQAIWSLLFSPDDDLYQA---AQDLLKQAFDV 554 (727)
T ss_pred HHHHcCcchhhHHHhheeCCChHHHHH---HHHHHHHHhcC
Confidence 66653 77888899999999988887 67777777654
No 342
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=36.87 E-value=1.2e+02 Score=38.05 Aligned_cols=133 Identities=17% Similarity=0.259 Sum_probs=74.1
Q ss_pred CCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHH-------------hcccchhhHHHHHHHHHHhhcCCChHHHHH
Q 002658 73 SQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCEL-------------HSELTSTHVTKIISHIVKRLKDSDSGMKEA 139 (896)
Q Consensus 73 ~pd~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg-------------~~d~I~P~LpkIL~~IlrrLkDpDs~VR~A 139 (896)
+..-+.++|..|+..-.-+ +.=-.++-+|+.++.. |.+.+.|+|..+-..=+.+..||+...|.-
T Consensus 282 ps~~Y~pL~~LLl~s~d~~--p~taS~v~ileEl~~~kqdva~~LVrLfl~~~r~~pfl~~L~~~ei~rtqD~NTlFRgN 359 (800)
T KOG2059|consen 282 PSQYYKPLMDLLLESVDVQ--PITASAVAILEELCREKQDVARPLVRLFLHSDRIVPFLSALAVNEIKRTQDPNTIFRGN 359 (800)
T ss_pred cHhhhhhHHHHHHhccccc--ccchhHHHHHHHHhhhhhhHHHHHHHHHhcccchHHHHHHHHHHHHHhcCCCceeeecc
Confidence 4444667777776553211 1112345555555442 445678888888888899999999888854
Q ss_pred H--HHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhcCCHhH-HHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHH
Q 002658 140 C--RDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGV-QSGAAMCMAKMVECASDPPVVAFQKLCARICKL 214 (896)
Q Consensus 140 c--~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~Eqnk~V-Q~gAasALAkIIE~a~d~~~~yL~~LlPRL~kL 214 (896)
. ...+-.+.... +..++...|+|+++-+-+..|.+ -.=+=......+|........|++.|...+.+-
T Consensus 360 SLasK~mde~mkl~-------Gm~YLh~tLkPvi~kI~eekK~cEiDP~Kv~~g~~lE~n~~nLr~y~~~lf~ait~S 430 (800)
T KOG2059|consen 360 SLASKMMDEFMKLA-------GMHYLHVTLKPVIDKIFEEKKPCEIDPSKVKVGDNLETNLENLRVYVGRLFEAITKS 430 (800)
T ss_pred chHHHHHHHHHHHh-------chHHHHHHhHHHHHHHHhhcCCcccChhhhhhhhHHHhhHHHHHHHHHHHHHHHHhc
Confidence 3 22333333333 23678889999999983321111 111111122225544344456777776666543
No 343
>smart00543 MIF4G Middle domain of eukaryotic initiation factor 4G (eIF4G). Also occurs in NMD2p and CBP80. The domain is rich in alpha-helices and may contain multiple alpha-helical repeats. In eIF4G, this domain binds eIF4A, eIF3, RNA and DNA. Ponting (TiBS) "Novel eIF4G domain homologues (in press)
Probab=35.86 E-value=4.6e+02 Score=26.20 Aligned_cols=79 Identities=16% Similarity=0.266 Sum_probs=40.3
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccchhhHHHHHH
Q 002658 44 KILTSLSKLADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIIS 123 (896)
Q Consensus 44 rll~~L~KLsDRDT~k~Aa~eLD~La~~L~pd~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~ 123 (896)
++...++|++. +.....+.+|..+... .++....++..|.+..... +..-.....+++.+....+ .+-..++.
T Consensus 3 ~v~~~lnkLs~-~n~~~~~~~l~~~~~~-~~~~~~~l~~~i~~~~~~~-~~~~~~ya~L~~~l~~~~~----~f~~~ll~ 75 (200)
T smart00543 3 KVKGLINKLSP-SNFESIIKELLKLNNS-DKNLRKYILELIFEKAVEE-PNFIPAYARLCALLNAKNP----DFGSLLLE 75 (200)
T ss_pred HHHHHHhhCCH-HHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHHHH----HHHHHHHH
Confidence 56678899984 4555556666665542 2334666677776654322 2233333344444444333 33334444
Q ss_pred HHHHhh
Q 002658 124 HIVKRL 129 (896)
Q Consensus 124 ~IlrrL 129 (896)
.+...+
T Consensus 76 ~~~~~f 81 (200)
T smart00543 76 RLQEEF 81 (200)
T ss_pred HHHHHH
Confidence 444443
No 344
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=35.67 E-value=59 Score=31.12 Aligned_cols=49 Identities=22% Similarity=0.306 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHH-----HHHHHHhhccccchhhhHhHhhhhhHHHHHHH
Q 002658 518 LAIQRQLMQLERQQAHL-----MNMLQDFMGGSHDSMVTLENRVRGLERVVEDM 566 (896)
Q Consensus 518 ~~Ir~QL~qiE~qQs~L-----~dlLQ~Fmg~s~~~m~~Le~RV~gLE~~~dei 566 (896)
....+.|.+||.+-.|| +.-||.-|+.----|..|+.++.|+++.++=+
T Consensus 45 ~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lL 98 (106)
T PF10805_consen 45 DEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLDLL 98 (106)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 33499999999999998 88899999998888999999999988877643
No 345
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=35.55 E-value=62 Score=23.96 Aligned_cols=36 Identities=17% Similarity=0.326 Sum_probs=26.6
Q ss_pred HHHHHHHHHhhhchhhhhHHHHHHHHHHHHHhc-CCc
Q 002658 807 EVLHAIGQFLLEQNLFDICLSWIQQLVELVLEN-GPH 842 (896)
Q Consensus 807 e~l~~i~~~l~~~~~~d~~~~w~qq~~~l~~~~-g~~ 842 (896)
..++.++.++..+.=|+-++.|.++++++-..- |+|
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G~~ 39 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEIRERLLGPD 39 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhccc
Confidence 467889999999999999999999999987665 554
No 346
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=35.19 E-value=90 Score=32.13 Aligned_cols=132 Identities=15% Similarity=0.134 Sum_probs=75.6
Q ss_pred CChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHH-HHHHHHHHHHHhcccchhhHHHHHHHHHHhhcC
Q 002658 53 ADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKE-SVRLLALVCELHSELTSTHVTKIISHIVKRLKD 131 (896)
Q Consensus 53 sDRDT~k~Aa~eLD~La~~L~pd~Lp~fLs~L~es~ss~k~~vRKe-AIllLG~IAeg~~d~I~P~LpkIL~~IlrrLkD 131 (896)
.-++.+-.|+.-|+.....++++.+ .++..+.+.. .+|.+--. |..+++.+...+ +.+.+.+.+=+.+
T Consensus 63 ~~~E~~~la~~il~~~~~~~~~~~~-~~~~~~~~~~--~~W~~~D~~~~~~~~~~~~~~--------~~~~~~~~~W~~s 131 (213)
T PF08713_consen 63 GYREERYLALLILDKRRKKLTEEDL-ELLEKWLPDI--DNWATCDSLCSKLLGPLLKKH--------PEALELLEKWAKS 131 (213)
T ss_dssp SCHHHHHHHHHHHHHCGGG--HHHH-HHHHHCCCCC--CCHHHHHHHTHHHHHHHHHHH--------GGHHHHHHHHHHC
T ss_pred chHHHHHHHHHHhHHHhhhhhHHHH-HHHHHHhccC--CcchhhhHHHHHHHHHHHHhh--------HHHHHHHHHHHhC
Confidence 4566666666666655543332212 2222223222 34643333 455555554433 5567788888999
Q ss_pred CChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCchhHH
Q 002658 132 SDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQ 205 (896)
Q Consensus 132 pDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~a~d~~~~yL~ 205 (896)
.++-+|.+++.++- .++.+ .....++..+-..+.+....||.|.+-+|..+...-++...+||.
T Consensus 132 ~~~w~rR~~~v~~~---~~~~~-------~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~~~~v~~~l~ 195 (213)
T PF08713_consen 132 DNEWVRRAAIVMLL---RYIRK-------EDFDELLEIIEALLKDEEYYVQKAIGWALREIGKKDPDEVLEFLQ 195 (213)
T ss_dssp SSHHHHHHHHHCTT---THGGG-------CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-HHHHHHHHH
T ss_pred CcHHHHHHHHHHHH---HHHHh-------cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 99999998876543 33311 225556655555667889999999999998877643333333443
No 347
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=35.01 E-value=1.1e+02 Score=38.31 Aligned_cols=136 Identities=12% Similarity=0.047 Sum_probs=89.9
Q ss_pred CCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhccc---chh---hHHHHHHHHHHhhcCCChHHHHHHHHHHHHHH
Q 002658 75 ESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSEL---TST---HVTKIISHIVKRLKDSDSGMKEACRDSIGSLS 148 (896)
Q Consensus 75 d~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~---I~P---~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA 148 (896)
..+.+|+.+|.. +.+..+=+++.=+|-++..+-+.. +.- --++.+|+|+..|.-.++.|-.+++-+|..|+
T Consensus 518 ~vVr~Yl~Ll~~---s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls 594 (717)
T KOG1048|consen 518 SVVRPYLLLLAL---SKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLS 594 (717)
T ss_pred HHHHHHHHHHHH---hcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhc
Confidence 336677877773 345667778888888887765532 222 23667899999999999888778888888888
Q ss_pred HHHhcccccCCchhHhhhHHHHHHHHhc-CC-----HhHHHHHHHHHHHHHHhcCCCCchhHH-HHHHHHHHHhcCC
Q 002658 149 KLYLNGKEENNGTVVGLFVKPLFEAMME-QN-----KGVQSGAAMCMAKMVECASDPPVVAFQ-KLCARICKLLSNQ 218 (896)
Q Consensus 149 ~~li~~~~e~~~~~~~~lL~pL~eaL~E-qn-----k~VQ~gAasALAkIIE~a~d~~~~yL~-~LlPRL~kLLks~ 218 (896)
...-... .+-...++-|++.|-+ .+ ..+-.++|..|..|+......-..+++ +-+++|.-|.++.
T Consensus 595 ~d~rnk~-----ligk~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~~nAkdl~~~~g~~kL~~I~~s~ 666 (717)
T KOG1048|consen 595 RDIRNKE-----LIGKYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKNVLNAKDLLEIKGIPKLRLISKSQ 666 (717)
T ss_pred cCchhhh-----hhhcchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHhHHHHHHHHhccChHHHHHHhccc
Confidence 8773221 2234577888888832 22 567778999999999432111122333 3567777777664
No 348
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=34.63 E-value=42 Score=24.27 Aligned_cols=30 Identities=23% Similarity=0.426 Sum_probs=20.7
Q ss_pred hhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhhcCC
Q 002658 93 PAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDS 132 (896)
Q Consensus 93 ~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrLkDp 132 (896)
|.+|.+++.+||.+. + +.-++.++..|+|+
T Consensus 1 ~~vR~~aa~aLg~~~--~--------~~a~~~L~~~l~d~ 30 (30)
T smart00567 1 PLVRHEAAFALGQLG--D--------EEAVPALIKALEDE 30 (30)
T ss_pred CHHHHHHHHHHHHcC--C--------HhHHHHHHHHhcCC
Confidence 578999999999872 2 33355566666653
No 349
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=34.03 E-value=3e+02 Score=27.61 Aligned_cols=72 Identities=15% Similarity=0.133 Sum_probs=54.6
Q ss_pred cHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcchHHHhh------HHHHHHHHHhhhcCCChhhHHHHHHHHHHHHH
Q 002658 243 SLEPLLQSIHECLGSTDWATRKAAADALSALALHSSNLVIDG------ATSTLTVLEACRFDKIKPVRDSMNEALQLWKK 316 (896)
Q Consensus 243 yle~lLp~L~e~LsddDW~lRKaA~EaLgsLA~avGe~L~Py------~~~~I~~LE~~RfDKvKpVRDaA~eALe~WK~ 316 (896)
.-...+..|...|.+.+..+-..|+..|-.+....|..|... ++.+++.+.. .....||+-+++.++-|..
T Consensus 38 ~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~---~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 38 QPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKT---TKNEEVRQKILELIQAWAL 114 (142)
T ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcc---cCCHHHHHHHHHHHHHHHH
Confidence 355777888888888888888889999999999999766644 3444444433 4556799999999999985
Q ss_pred h
Q 002658 317 I 317 (896)
Q Consensus 317 l 317 (896)
-
T Consensus 115 ~ 115 (142)
T cd03569 115 A 115 (142)
T ss_pred H
Confidence 3
No 350
>cd00872 PI3Ka_I Phosphoinositide 3-kinase (PI3K) class I, accessory domain ; PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3K class I prefer phosphoinositol (4,5)-bisphosphate as a substrate. Mammalian members interact with active Ras. They form heterodimers with adapter molecules linking them to different signaling pathways.
Probab=33.29 E-value=2.6e+02 Score=29.17 Aligned_cols=85 Identities=11% Similarity=0.065 Sum_probs=50.7
Q ss_pred HHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhhcCCCh----HH-HH
Q 002658 64 DLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDS----GM-KE 138 (896)
Q Consensus 64 eLD~La~~L~pd~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrLkDpDs----~V-R~ 138 (896)
+.-.++..-++-.....|..|..... ++.+|+.|+..|..+. .+.+.-||++++..+-----+..+ .+ |.
T Consensus 58 e~~~lL~~W~~i~~~~aLeLL~~~f~--d~~VR~yAV~~L~~~s---d~eL~~yL~QLVQaLKyE~~~ds~La~FLl~Ra 132 (171)
T cd00872 58 QMYQLLKRWPKLKPEQALELLDCNFP--DEHVREFAVRCLEKLS---DDELLQYLLQLVQVLKYEPYHDSDLVRFLLKRA 132 (171)
T ss_pred HHHHHHHCCCCCCHHHHHHHCCCcCC--CHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHcccccCCHHHHHHHHHH
Confidence 33334444334345556777776554 4899999999887643 255788888887765443322223 33 44
Q ss_pred HHHHHHHHHHHHHhc
Q 002658 139 ACRDSIGSLSKLYLN 153 (896)
Q Consensus 139 Ac~~aLG~LA~~li~ 153 (896)
.+...||...-|+++
T Consensus 133 l~n~~igh~lfW~L~ 147 (171)
T cd00872 133 LRNQRIGHFFFWHLR 147 (171)
T ss_pred hcCHHHHHHHHHHHH
Confidence 444467777777765
No 351
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=33.08 E-value=9.7e+02 Score=29.12 Aligned_cols=146 Identities=17% Similarity=0.216 Sum_probs=90.3
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHHHHhc----CCCCCHHHHHHHHhhhcCCCCh-hhHHHHHHHHHHHHHHh-----cc
Q 002658 43 QKILTSLSKLADRDTHQIAIEDLEKTIQT----LSQESLPMLLNCLYESSNDPKP-AVKKESVRLLALVCELH-----SE 112 (896)
Q Consensus 43 ~rll~~L~KLsDRDT~k~Aa~eLD~La~~----L~pd~Lp~fLs~L~es~ss~k~-~vRKeAIllLG~IAeg~-----~d 112 (896)
-+++++|.+.-..|...+.++-|...+++ |.-- =.+++.++++-....+. ..+..++-+|..+++.- ||
T Consensus 226 ~~l~~ll~~~v~~d~~eM~feila~~aend~Vkl~la-~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGD 304 (604)
T KOG4500|consen 226 FMLLQLLPSMVREDIDEMIFEILAKAAENDLVKLSLA-QNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGD 304 (604)
T ss_pred HHHHHHHHHhhccchhhHHHHHHHHHhcCcceeeehh-hcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCc
Confidence 34566666665666777777777766653 1000 12344444443333222 23456888888888742 22
Q ss_pred cchhhH---HHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHh-----cCCHhHHHH
Q 002658 113 LTSTHV---TKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMM-----EQNKGVQSG 184 (896)
Q Consensus 113 ~I~P~L---pkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~-----Eqnk~VQ~g 184 (896)
..-.|| |+++.+++.-+...|....-+.+-+||.+++.=..+. .-.-..++.-|++.|. +.|..+|-+
T Consensus 305 eSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci----~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA 380 (604)
T KOG4500|consen 305 ESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICI----QLVQKDFLNKLISCLMQEKDVDGNVERQHA 380 (604)
T ss_pred hHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHH----HHHHHHHHHHHHHHHHHhcCCCccchhHHH
Confidence 211122 4578888888888999999999999999987431110 0123457788888883 347889999
Q ss_pred HHHHHHHHH
Q 002658 185 AAMCMAKMV 193 (896)
Q Consensus 185 AasALAkII 193 (896)
+++||-.+.
T Consensus 381 ~lsALRnl~ 389 (604)
T KOG4500|consen 381 CLSALRNLM 389 (604)
T ss_pred HHHHHHhcc
Confidence 999987765
No 352
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=32.82 E-value=58 Score=32.82 Aligned_cols=54 Identities=26% Similarity=0.222 Sum_probs=34.2
Q ss_pred hhhHHHHHHHHHHHHh--cc-ccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 002658 220 FMAKASLLPVVGSLSQ--VG-AIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALA 274 (896)
Q Consensus 220 ~kaK~alL~aIgSLA~--vg-a~~~pyle~lLp~L~e~LsddDW~lRKaA~EaLgsLA 274 (896)
......++.|+-++.. .| ..+. .-..++..|..+|.+.+..+|+.|+|.|+.|+
T Consensus 130 ~~~~~~~l~Clkal~n~~~G~~~v~-~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 130 IDIEHECLRCLKALMNTKYGLEAVL-SHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp HHHHHHHHHHHHHHTSSHHHHHHHH-CSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHH-cCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 3444566777777753 33 1110 01234567778888999999999999999886
No 353
>COG5314 Conjugal transfer/entry exclusion protein [Intracellular trafficking and secretion]
Probab=32.79 E-value=1.1e+02 Score=33.48 Aligned_cols=57 Identities=23% Similarity=0.200 Sum_probs=41.9
Q ss_pred cccccHHHHHHHHHHHHH-------HHHHHHHHHHHhhccccchhhhHhHhhhhhHHHHHHHHH
Q 002658 512 NNKGNWLAIQRQLMQLER-------QQAHLMNMLQDFMGGSHDSMVTLENRVRGLERVVEDMAR 568 (896)
Q Consensus 512 ~~~~~l~~Ir~QL~qiE~-------qQs~L~dlLQ~Fmg~s~~~m~~Le~RV~gLE~~~deis~ 568 (896)
|..++.+.-=++|.|||| |=.-++||||---+=+-+...-|+.=+.-|+.++|+.++
T Consensus 41 N~~Qnilta~rsleqVnnQIqqlQnQaq~yqNmlqNta~l~~~iw~Ql~~~l~kl~~l~d~aqg 104 (252)
T COG5314 41 NYAQNILTAVRSLEQVNNQIQQLQNQAQQYQNMLQNTAALPFYIWGQLSQVLNKLQNLQDQAQG 104 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHhH
Confidence 555555555555555555 455567788877788888889999999999999999764
No 354
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=32.68 E-value=4.4e+02 Score=26.59 Aligned_cols=74 Identities=18% Similarity=0.169 Sum_probs=54.3
Q ss_pred cHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcchHHHhhH--HHHHHHHHhhhcC-CChhhHHHHHHHHHHHHH
Q 002658 243 SLEPLLQSIHECLGSTDWATRKAAADALSALALHSSNLVIDGA--TSTLTVLEACRFD-KIKPVRDSMNEALQLWKK 316 (896)
Q Consensus 243 yle~lLp~L~e~LsddDW~lRKaA~EaLgsLA~avGe~L~Py~--~~~I~~LE~~RfD-KvKpVRDaA~eALe~WK~ 316 (896)
.....+..|...|.+.+..+-..|+..|-+++...|..|...+ ..+++.|...-.+ ....|++-+++.++.|..
T Consensus 34 ~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~ 110 (144)
T cd03568 34 GAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWAD 110 (144)
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 3457777888888888888888899999999999998776443 2333333333333 667799999999999974
No 355
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=32.41 E-value=87 Score=30.10 Aligned_cols=62 Identities=18% Similarity=0.437 Sum_probs=42.8
Q ss_pred HHHHHHHHHHcC-CChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhccc
Q 002658 41 MKQKILTSLSKL-ADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSEL 113 (896)
Q Consensus 41 Lk~rll~~L~KL-sDRDT~k~Aa~eLD~La~~L~pd~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~ 113 (896)
+|.-++.+|..+ ...... ...+..++ .|+.+|+|-. .++.+|..|+-|+.++-++++++.+.
T Consensus 2 ~K~~lvrlianl~~~~~~~-------Qd~vr~~~--Gi~liL~~c~--iD~~nP~irEwai~aiRnL~e~n~eN 64 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEV-------QDLVRELG--GIPLILSCCN--IDDHNPFIREWAIFAIRNLCEGNPEN 64 (102)
T ss_pred cHHHHHHHHHHHHhCCHHH-------HHHHHHcC--ChHHHHHhcC--CCcccHHHHHHHHHHHHHHHhCCHHH
Confidence 567777777777 222111 11222222 4888888854 56778999999999999999998765
No 356
>KOG1810 consensus Cell cycle-associated protein [Cell cycle control, cell division, chromosome partitioning]
Probab=31.95 E-value=4.4e+02 Score=35.50 Aligned_cols=182 Identities=17% Similarity=0.210 Sum_probs=107.9
Q ss_pred hhhHHHHHHHHHHHHHHhc-cc--chhhHHHHHHHHHHhhcCCC-hHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHH
Q 002658 93 PAVKKESVRLLALVCELHS-EL--TSTHVTKIISHIVKRLKDSD-SGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVK 168 (896)
Q Consensus 93 ~~vRKeAIllLG~IAeg~~-d~--I~P~LpkIL~~IlrrLkDpD-s~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~ 168 (896)
|..-|+...+||.|.+.+. +. ..-.|++|=.+.+..|..-. ..-=+.+..+...|++ +.........+.-..-|.
T Consensus 659 Wra~Kevs~ll~~Ii~k~~~~~~lt~~qLe~IG~lfl~~LaeikHrGAfe~~~~gf~~lC~-f~~s~~~~~~~lp~~wLe 737 (1417)
T KOG1810|consen 659 WRAVKEVSSLLETIIGKPQQDALLTPAQLEYIGSLFLLQLAEIKHRGAFESARPGFTALCS-FLQSNESRFPELPELWLE 737 (1417)
T ss_pred HHHHHHHHHHHHHHHHhhccccccCHHHHHHHHHHHHHHHHHHHhccchhhccccHHHHHH-HHHhcccccccCcHHHHH
Confidence 8888999999999998862 22 23356666555555442110 1111223334666665 223211011122333445
Q ss_pred HHHHHHhcCCHhHH---HHHHHHHHHHHHhcCCC-CchhHHHHHHHHHHHhcCCchh-------hHHHHHHHHHHHHhcc
Q 002658 169 PLFEAMMEQNKGVQ---SGAAMCMAKMVECASDP-PVVAFQKLCARICKLLSNQNFM-------AKASLLPVVGSLSQVG 237 (896)
Q Consensus 169 pL~eaL~Eqnk~VQ---~gAasALAkIIE~a~d~-~~~yL~~LlPRL~kLLks~s~k-------aK~alL~aIgSLA~vg 237 (896)
.+++.+.++...+- +|.=..+.++++...+. +.+.+++-+-+|+++.+.+... .+.+++.++.++...-
T Consensus 738 e~l~~i~~kt~~itRRSaGlP~ll~al~~te~~~~~k~ll~r~~~~Ll~ia~~p~~~~~~~~~~p~VHA~NvmkaIf~~~ 817 (1417)
T KOG1810|consen 738 ELLEKILAKTSGITRRSAGLPFLLTALVETELKLGMKELLPRCFCKLLKIAECPLPGEWGEGDEPRVHAMNVMKAIFTSS 817 (1417)
T ss_pred HHHHHHHhhcccchhccCCCCHHHHHHHHhhhcccchhhhHHHHHHHHHHhcCCCccccCCCcchhhhhHHHHHHHHccc
Confidence 55555533322211 23344566667664433 3567888888999999877544 3457788888876422
Q ss_pred ---ccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 002658 238 ---AIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALAL 275 (896)
Q Consensus 238 ---a~~~pyle~lLp~L~e~LsddDW~lRKaA~EaLgsLA~ 275 (896)
.....++...|..-.+.+..+.|+.|-.|.-.+.++-.
T Consensus 818 ~LS~~~sef~s~Al~lAi~~fs~~~W~~RN~atlLfaALi~ 858 (1417)
T KOG1810|consen 818 ILSNERSEFQSRALRLAIEGFSHDMWAERNSATLLFAALIN 858 (1417)
T ss_pred hhhHHHHHHHHHHHHHHHHhcCchHHhhhhhHHHHHHHHHH
Confidence 33467888888888888888889999999888776543
No 357
>KOG2140 consensus Uncharacterized conserved protein [General function prediction only]
Probab=31.86 E-value=1.1e+03 Score=29.33 Aligned_cols=112 Identities=10% Similarity=0.005 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHhcCCCCch-hHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHh--cc-ccCcccHHHHHHHHHHhhCCCC
Q 002658 184 GAAMCMAKMVECASDPPVV-AFQKLCARICKLLSNQNFMAKASLLPVVGSLSQ--VG-AIAPQSLEPLLQSIHECLGSTD 259 (896)
Q Consensus 184 gAasALAkIIE~a~d~~~~-yL~~LlPRL~kLLks~s~kaK~alL~aIgSLA~--vg-a~~~pyle~lLp~L~e~LsddD 259 (896)
-+..||.++|..--..+.+ .|..|+-.|.+-++-+.+..-..++.+|.-++. |. .+ ..=.+|-.|++-=+++.
T Consensus 215 ~vyaALvAviNskfP~IgElLlkrLilqf~r~f~RnDk~~c~~~~kfiahLinq~VahEI---v~Leil~lLLe~PTddS 291 (739)
T KOG2140|consen 215 PVYAALVAVINSKFPQIGELLLKRLILQFKRSFRRNDKVSCLNASKFIAHLINQQVAHEI---VALEILTLLLERPTDDS 291 (739)
T ss_pred HHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhcCCCCch
Confidence 3667788888653222223 456677777777766655544455556655542 21 11 11134445555555666
Q ss_pred HHHHHHHHHHHHHHHHhcc-hHHHhhHHHHHHHHHhhhcC
Q 002658 260 WATRKAAADALSALALHSS-NLVIDGATSTLTVLEACRFD 298 (896)
Q Consensus 260 W~lRKaA~EaLgsLA~avG-e~L~Py~~~~I~~LE~~RfD 298 (896)
-.+-.+.+.-+|.....+. ..+--....+=.+|.....|
T Consensus 292 vevaI~flkecGakL~~VSpr~~n~IfErlR~ILhe~Eld 331 (739)
T KOG2140|consen 292 VEVAIAFLKECGAKLAEVSPRALNGIFERLRYILHEGELD 331 (739)
T ss_pred HHHHHHHHHHHHHHHHHhChHHHhHHHHHHHHHHhHhhHH
Confidence 6665555555665444444 33333334444455555555
No 358
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=31.22 E-value=1e+02 Score=31.01 Aligned_cols=44 Identities=20% Similarity=0.166 Sum_probs=35.1
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcc-hHHHhhHHHHHHHHH
Q 002658 246 PLLQSIHECLGSTDWATRKAAADALSALALHSS-NLVIDGATSTLTVLE 293 (896)
Q Consensus 246 ~lLp~L~e~LsddDW~lRKaA~EaLgsLA~avG-e~L~Py~~~~I~~LE 293 (896)
.+-..+..+|.+.|..+.+.|++||.+ .. +.+.||.+.+-+.+.
T Consensus 17 ~l~~~~~~LL~~~d~~vQklAL~cll~----~k~~~l~pY~d~L~~Lld 61 (141)
T PF07539_consen 17 ELYDALLRLLSSRDPEVQKLALDCLLT----WKDPYLTPYKDNLENLLD 61 (141)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHH----hCcHHHHhHHHHHHHHcC
Confidence 444556788999999999999999975 33 688999887777776
No 359
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.21 E-value=3.4e+02 Score=36.76 Aligned_cols=119 Identities=15% Similarity=0.148 Sum_probs=84.2
Q ss_pred HHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccchh------hHHHHHHHHHHh-hc--CC--C----hHHHHHHH
Q 002658 77 LPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTST------HVTKIISHIVKR-LK--DS--D----SGMKEACR 141 (896)
Q Consensus 77 Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I~P------~LpkIL~~Ilrr-Lk--Dp--D----s~VR~Ac~ 141 (896)
.-.++.+|.+.-.+..+.||..|+..|=.+...|+..+.+ .+..|+|.+-.. .+ +. . -.--+.||
T Consensus 995 wi~ll~~L~~~~~dsr~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~~~ewngkeiqkqwtet~~ 1074 (1610)
T KOG1848|consen 995 WIMLLVHLADLCEDSRAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQNVSEWNGKEIQKQWTETSC 1074 (1610)
T ss_pred HHHHHHHHHHHhccchHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccchhhhcchhHhhhhhhhhh
Confidence 3355778888778889999999999999999999988776 344555543310 00 10 0 12246788
Q ss_pred HHHHHHHHHHhcc-----cccCCchhHhhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHh
Q 002658 142 DSIGSLSKLYLNG-----KEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVEC 195 (896)
Q Consensus 142 ~aLG~LA~~li~~-----~~e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~ 195 (896)
-+|+.|+..+-.. ...+-.+.|..+|.-|-.++.+.++++-.+|..|+..++-.
T Consensus 1075 ltisgIaklf~e~fk~llnln~f~~vwe~ll~flkrl~s~~s~e~slsai~~~qell~s 1133 (1610)
T KOG1848|consen 1075 LTISGIAKLFSENFKLLLNLNGFLDVWEELLQFLKRLHSDISPEISLSAIKALQELLFS 1133 (1610)
T ss_pred hhHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHHHHH
Confidence 8999888877331 11122366888887777777888999999999999988765
No 360
>PF03542 Tuberin: Tuberin; InterPro: IPR018515 Initiation of eukaryotic mRNA transcription requires melting of promoter DNA with the help of the general transcription factors TFIIE and TFIIH. In higher eukaryotes, the general transcription factor TFIIE consists of two subunits: the large alpha subunit (IPR002853 from INTERPRO) and the small beta (IPR003166 from INTERPRO). TFIIE beta has been found to bind to the region where the promoter starts to open to be single-stranded upon transcription initiation by RNA polymerase II. The approximately 120-residue central core domain of TFIIE beta plays a role in double-stranded DNA binding of TFIIE []. The TFIIE beta central core DNA-binding domain consists of three helices with a beta hairpin at the C terminus, resembling the winged helix proteins. It shows a novel double-stranded DNA-binding activity where the DNA-binding surface locates on the opposite side to the previously reported winged helix motif by forming a positively charged furrow []. This domain is found in Tuberin proteins. ; GO: 0005096 GTPase activator activity, 0043547 positive regulation of GTPase activity
Probab=30.73 E-value=9.2e+02 Score=28.12 Aligned_cols=150 Identities=14% Similarity=0.198 Sum_probs=96.9
Q ss_pred HhhhHHHHHHHH-hcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCch---------h-----hHHHHH
Q 002658 163 VGLFVKPLFEAM-MEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNF---------M-----AKASLL 227 (896)
Q Consensus 163 ~~~lL~pL~eaL-~Eqnk~VQ~gAasALAkIIE~a~d~~~~yL~~LlPRL~kLLks~s~---------k-----aK~alL 227 (896)
+...+..+++.| .|.+..|-.-...-|...+++-.-....-++.|+--|++++.++.+ . +...++
T Consensus 139 is~~~~~il~~L~~e~dWeV~s~VL~hLp~qL~Nk~Lf~~~~I~~L~~~Lc~~i~d~~~~~~l~~~p~~~~~~D~~~~~~ 218 (356)
T PF03542_consen 139 ISEWFSVILQCLEHETDWEVYSYVLVHLPSQLSNKALFLGADIDQLRNALCSMICDRSFLESLSNKPTGFKRADLQVCVF 218 (356)
T ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhhhhHHhccCcHHHHHHHHHHHHhcccccccccCCCCCCCHHHHHHHHH
Confidence 667788888888 5778888887777777777763111111267777777777654321 1 123566
Q ss_pred HHHHHHHhccccC-cccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcchHHHhhHHHHHHHHHhhhcCCChhhHHH
Q 002658 228 PVVGSLSQVGAIA-PQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSSNLVIDGATSTLTVLEACRFDKIKPVRDS 306 (896)
Q Consensus 228 ~aIgSLA~vga~~-~pyle~lLp~L~e~LsddDW~lRKaA~EaLgsLA~avGe~L~Py~~~~I~~LE~~RfDKvKpVRDa 306 (896)
.++.+++.=-..+ ..--+.++.++...|.+. +=+.++.+|..-...+++.+..+++.++.-|.... .-...
T Consensus 219 ~~Ls~LisYh~~~~k~~qd~iV~~l~~GL~s~---~a~~CI~aLtic~~EmP~s~~k~L~~iL~kLs~i~-----tt~~~ 290 (356)
T PF03542_consen 219 PVLSALISYHSHFSKQEQDEIVRALESGLGSK---TAKPCIHALTICCYEMPDSMKKLLPSILLKLSKIS-----TTPNM 290 (356)
T ss_pred HHHHHHHHHHHhcCHhHHHHHHHHHHHHhccC---cHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhc-----cchhh
Confidence 6666665322333 333457778887777662 23566777777778888999999999987775221 12246
Q ss_pred HHHHHHHHHHhccC
Q 002658 307 MNEALQLWKKIAGK 320 (896)
Q Consensus 307 A~eALe~WK~la~~ 320 (896)
|.-.|||...+...
T Consensus 291 Ai~ILEFLs~L~~l 304 (356)
T PF03542_consen 291 AIHILEFLSSLSRL 304 (356)
T ss_pred HHHHHHHHHHHhhC
Confidence 77789998888755
No 361
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=30.33 E-value=90 Score=22.22 Aligned_cols=30 Identities=17% Similarity=0.314 Sum_probs=26.2
Q ss_pred HHHHHHHHHhhhchhhhhHHHHHHHHHHHH
Q 002658 807 EVLHAIGQFLLEQNLFDICLSWIQQLVELV 836 (896)
Q Consensus 807 e~l~~i~~~l~~~~~~d~~~~w~qq~~~l~ 836 (896)
+++..++..+.+.+-|+.++-++++.+++-
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 578889999999999999999999998874
No 362
>PF12531 DUF3731: DNA-K related protein ; InterPro: IPR021030 Proteins in this family are bacterial proteins of approximately 250 amino acids in length. There are two conserved sequence motifs: RPG and WRR. The proteins in this family are frequently annotated as DNA-K related proteins however there is little accompanying literature to confirm this.
Probab=30.09 E-value=1.3e+02 Score=33.38 Aligned_cols=112 Identities=18% Similarity=0.153 Sum_probs=63.9
Q ss_pred hhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHH
Q 002658 94 AVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEA 173 (896)
Q Consensus 94 ~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~ea 173 (896)
..-.+.+++++.+=+. -..+--.+..-++++|+-+.. ..+.-|+||+|+....=-+ ..+.-+-+..+...++.
T Consensus 96 ~~~~emvRl~asLErL----~~~~K~elg~wll~rL~~~~~--~~~~wWAlGRlgaR~p~yG-s~h~Vvp~~~~~~wl~~ 168 (249)
T PF12531_consen 96 QSYDEMVRLAASLERL----PVEDKIELGEWLLKRLQKPSE--SAQHWWALGRLGARVPFYG-SAHNVVPPEVAEQWLDA 168 (249)
T ss_pred cCHHHHHHHHHhhccC----CHHHHHHHHHHHHHHhcCCCC--CcchHHHHHHHHhcCcccC-CcccccCHHHHHHHHHH
Confidence 3445667776654222 244556677888889988774 3445599999998873211 11223445667777788
Q ss_pred HhcCCHhHHHHHHHHHHHHHHhc----CCCCchhHHHHHHHHH
Q 002658 174 MMEQNKGVQSGAAMCMAKMVECA----SDPPVVAFQKLCARIC 212 (896)
Q Consensus 174 L~Eqnk~VQ~gAasALAkIIE~a----~d~~~~yL~~LlPRL~ 212 (896)
|.+.+..-...|+-|+..++.-. .|....+-.+++.+|.
T Consensus 169 ll~~dwk~~~~a~fA~~q~aR~TgDR~rDl~~~~R~~v~~~L~ 211 (249)
T PF12531_consen 169 LLALDWKKPPPAAFAAVQMARMTGDRARDLPDALRQKVIEKLK 211 (249)
T ss_pred HHhcCCCCCchHHHHHHHHHHhcCCcccCcCHHHHHHHHHHHH
Confidence 86655443334445555555544 3333344445555554
No 363
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=30.02 E-value=1.1e+02 Score=26.15 Aligned_cols=40 Identities=10% Similarity=0.213 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHhcCCcc
Q 002658 804 VANEVLHAIGQFLLEQNLFDICLSWIQQLVELVLENGPHV 843 (896)
Q Consensus 804 ~~~e~l~~i~~~l~~~~~~d~~~~w~qq~~~l~~~~g~~~ 843 (896)
..-.+++.|+..+.++.=|+-++.+.++.+++....|++-
T Consensus 3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 42 (78)
T PF13424_consen 3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDH 42 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 4557889999999999999999999999999977788754
No 364
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=29.58 E-value=8.7e+02 Score=27.49 Aligned_cols=187 Identities=14% Similarity=0.133 Sum_probs=100.4
Q ss_pred chhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhcCCHhHHHHHHHHHHHHH
Q 002658 114 TSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMV 193 (896)
Q Consensus 114 I~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasALAkII 193 (896)
....+..++..++..+..... ++.. ...+++.+ +..-++-|...|....+.++.++..=|..++
T Consensus 21 ~~~~~~~~L~~~l~~ls~~~~-~~~~----g~~l~~~i-----------L~~~~k~lyr~L~~~~~~~~~~~LrLL~~iv 84 (330)
T PF11707_consen 21 LLSLVSSVLALLLKKLSSDLS-FQSY----GLELIRSI-----------LQNHLKLLYRSLSSSKPSLTNPALRLLTAIV 84 (330)
T ss_pred hHHHHHHHHHHHHHHhccchh-HHHH----HHHHHHHH-----------HHHHHHHHHHHhCcCcHHHHHHHHHHHHHHH
Confidence 444566667777777766554 2222 22334444 2334777888887667777777777777777
Q ss_pred H-hcCC---CCchhHHHHHHHHHHHhcCCc-------------hhhHHHHHHHHHHHHhccc--cCcccH--HHHHHHHH
Q 002658 194 E-CASD---PPVVAFQKLCARICKLLSNQN-------------FMAKASLLPVVGSLSQVGA--IAPQSL--EPLLQSIH 252 (896)
Q Consensus 194 E-~a~d---~~~~yL~~LlPRL~kLLks~s-------------~kaK~alL~aIgSLA~vga--~~~pyl--e~lLp~L~ 252 (896)
. +.+. ....+++.-++.|.+++.... ..+|.+.+..+-++...+. .-...+ ..++..++
T Consensus 85 ~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F~Lsfl~~~~~~~~~~lL~~~~~~~~l~ 164 (330)
T PF11707_consen 85 SFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRFWLSFLSSGDPELKRDLLSQKKLMSALF 164 (330)
T ss_pred ccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHHHHHHHccCCHHHHHHHHHcCchHHHHH
Confidence 7 2211 112233434445555553221 1677788888888875441 111111 12377788
Q ss_pred HhhCCCCHHHHHHHHHHHHH-HHHhcc----hHHHhhHHHHHHHHHhhhcCC-----ChhhHHHHHHHHHHHHHhccC
Q 002658 253 ECLGSTDWATRKAAADALSA-LALHSS----NLVIDGATSTLTVLEACRFDK-----IKPVRDSMNEALQLWKKIAGK 320 (896)
Q Consensus 253 e~LsddDW~lRKaA~EaLgs-LA~avG----e~L~Py~~~~I~~LE~~RfDK-----vKpVRDaA~eALe~WK~la~~ 320 (896)
..|..|+..+=...+++|-. |..... .+..-|=..++.-|-. -|+. ...|++. +-+|...++..
T Consensus 165 k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~-Ly~~~~~~~~~~~~~~---vh~fL~~lcT~ 238 (330)
T PF11707_consen 165 KGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLAS-LYSRDGEDEKSSVADL---VHEFLLALCTD 238 (330)
T ss_pred hcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHH-HhcccCCcccchHHHH---HHHHHHHHhcC
Confidence 88888887766666666553 222111 1222222334443332 2221 2346665 78888888843
No 365
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=29.44 E-value=7.1e+02 Score=31.32 Aligned_cols=87 Identities=16% Similarity=0.269 Sum_probs=54.7
Q ss_pred HHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcc-ccCcccHH-HHHHHHHHhhC-CCCHHHHHHHHHHHHHHHHhcchHH
Q 002658 205 QKLCARICKLLSNQNFMAKASLLPVVGSLSQVG-AIAPQSLE-PLLQSIHECLG-STDWATRKAAADALSALALHSSNLV 281 (896)
Q Consensus 205 ~~LlPRL~kLLks~s~kaK~alL~aIgSLA~vg-a~~~pyle-~lLp~L~e~Ls-ddDW~lRKaA~EaLgsLA~avGe~L 281 (896)
..++.+|-..|..+.+ |..+|.+++.++... ......++ .+++.|+.||. |.+-.+=-.|+-+|..|.-.++..+
T Consensus 69 K~~~~~l~~~~~~~~~--Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip~~l 146 (668)
T PF04388_consen 69 KHLFDKLNDYFVKPSY--RLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIPSSL 146 (668)
T ss_pred HHHHHHHHHHHcCchh--HHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccccchh
Confidence 3466666666676654 446777888876532 11111111 34455556654 4567777778888888888888888
Q ss_pred HhhHHHHHHHHH
Q 002658 282 IDGATSTLTVLE 293 (896)
Q Consensus 282 ~Py~~~~I~~LE 293 (896)
.+|+..+..++-
T Consensus 147 ~~~L~~Lf~If~ 158 (668)
T PF04388_consen 147 GPHLPDLFNIFG 158 (668)
T ss_pred hHHHHHHHHHHH
Confidence 888888877553
No 366
>cd05395 RasGAP_RASA4 Ras GTPase activating-like 4 protein (RASAL4), also known as Ca2+ -promoted Ras inactivator (CAPRI), is a member of the GAP1 family. Members of the GAP1 family are characterized by a conserved domain structure comprising N-terminal tandem C2 domains, a highly conserved central RasGAP domain, and a C-terminal pleckstrin-homology domain that is associated with a Bruton's tyrosine kinase motif. RASAL4, like RASAL, is a cytosolic protein that undergoes a rapid translocation to the plasma membrane in response to a receptor-mediated elevation in the concentration of intracellular free Ca2+ ([Ca2+]i). However, unlike RASAL, RASAL4 does not sense oscillations in [Ca2+]i.
Probab=28.88 E-value=9.6e+02 Score=27.76 Aligned_cols=73 Identities=8% Similarity=0.139 Sum_probs=49.7
Q ss_pred hHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhhcCCChHHHHHHHH--HHHHHHHHHhcccccCCchhHhhhHHHHHH
Q 002658 95 VKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRD--SIGSLSKLYLNGKEENNGTVVGLFVKPLFE 172 (896)
Q Consensus 95 vRKeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrLkDpDs~VR~Ac~~--aLG~LA~~li~~~~e~~~~~~~~lL~pL~e 172 (896)
.|.+....|-.+-. +...+.++|..++..=+.+..|+...+|.-+.. ++..+.... +..++..+|.|++.
T Consensus 36 ~~eela~~Lv~if~-~~g~~~~fL~~l~~~Ev~~~~~~~tLFR~NSlaTK~m~~y~k~~-------G~~YL~~~L~p~I~ 107 (337)
T cd05395 36 SRQDVANNLVKLFL-GQGLVKEFLDLLFKLELDKTTEPNTLFRSNSLASKSMESFLKVA-------GMQYLHRVLGPIIN 107 (337)
T ss_pred hHHHHHHHHHHHHH-HcCcHHHHHHHHHHHHHHhCCCHhHHhhcCcHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Confidence 35565555544443 224467888888888888889998888875544 466666643 23778888888888
Q ss_pred HHh
Q 002658 173 AMM 175 (896)
Q Consensus 173 aL~ 175 (896)
.+.
T Consensus 108 ~I~ 110 (337)
T cd05395 108 RVF 110 (337)
T ss_pred HHH
Confidence 873
No 367
>COG3416 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.63 E-value=1.3e+02 Score=32.61 Aligned_cols=31 Identities=6% Similarity=-0.061 Sum_probs=17.2
Q ss_pred cccCcc-CCCCCCCCccCCCCccccCCCCCCC
Q 002658 602 YSGTKY-NGRTPFGERFAQSDGVAASTRGRGP 632 (896)
Q Consensus 602 ~~~sKf-~r~~~~~~~~~~~~~~~~~~~~~~~ 632 (896)
||++-| |+.+++-.|+...+.-.-.-.+|+|
T Consensus 84 FLs~~f~~gt~~e~app~~a~~p~~~aap~S~ 115 (233)
T COG3416 84 FLSNAFKWGTPQEPAPPANAPPPKEPAAPPSW 115 (233)
T ss_pred hhhhhcccCCCCCCCCCcCCCCCCCCCCCCCc
Confidence 899988 7666664344433333333345555
No 368
>PF12243 CTK3: CTD kinase subunit gamma CTK3
Probab=27.10 E-value=5e+02 Score=26.35 Aligned_cols=80 Identities=14% Similarity=0.221 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHcCC--ChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhccc--
Q 002658 38 MVEMKQKILTSLSKLA--DRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSEL-- 113 (896)
Q Consensus 38 ~~~Lk~rll~~L~KLs--DRDT~k~Aa~eLD~La~~L~pd~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~-- 113 (896)
.||-+.+..+.|..|. =...++.|.-+|+- ..+ -.-+.+||.+.+...+-..|---+..+..+++.+...
T Consensus 3 pFE~r~~F~~~L~~L~aS~qSi~kaa~fAlk~--~~~----~edL~~cIle~le~~~lN~R~nI~~fID~l~e~~~~~~~ 76 (139)
T PF12243_consen 3 PFEVRMQFTQLLRRLNASQQSIQKAAQFALKN--RDM----EEDLWSCILEQLEKENLNTRINIFYFIDSLCESSQKSKK 76 (139)
T ss_pred hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHc--ccc----HHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHhccc
Confidence 4888999999999993 33455555556653 222 3345666666665555666777888888888887633
Q ss_pred -chhhHHHHHH
Q 002658 114 -TSTHVTKIIS 123 (896)
Q Consensus 114 -I~P~LpkIL~ 123 (896)
-.+|...|..
T Consensus 77 ~~~~Yv~~l~~ 87 (139)
T PF12243_consen 77 YNYPYVSMLQR 87 (139)
T ss_pred ccchhHHHHHH
Confidence 3556544433
No 369
>PF08625 Utp13: Utp13 specific WD40 associated domain; InterPro: IPR013934 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]. This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. Utp13 is a nucleolar protein and component of the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA []. Upt13 is also a component of the Pwp2 complex that forms part of a stable particle subunit independent of the U3 small nucleolar ribonucleoprotein that is essential for the initial assembly steps of the 90S pre-ribosome []. Components of the Pwp2 complex are: Utp1 (Pwp2), Utp6, Utp12 (Dip2), Utp13, Utp18, and Utp21. The relationship between the Pwp2 complex and the t-Utps complex [] that also associates with the 5' end of nascent pre-18S rRNA is unclear. ; GO: 0006364 rRNA processing, 0032040 small-subunit processome
Probab=26.90 E-value=1.3e+02 Score=30.30 Aligned_cols=84 Identities=20% Similarity=0.342 Sum_probs=55.3
Q ss_pred HHHHHHHcC--CChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhcc-c------c
Q 002658 44 KILTSLSKL--ADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSE-L------T 114 (896)
Q Consensus 44 rll~~L~KL--sDRDT~k~Aa~eLD~La~~L~pd~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d-~------I 114 (896)
+++.+|+++ .+.+....+-..|+.++..|+.+++..+|.++.+=.. ++..=..|-.+|..|...++- . +
T Consensus 28 ~ll~i~~~~~~~~~~~~~~g~~~l~~~i~~L~~~~l~~LL~~ir~WNT--Nsr~~~vAQ~vL~~il~~~~~~~L~~~~~~ 105 (141)
T PF08625_consen 28 RLLKILKDLLETEEDEDSIGSEELDEVIKKLDDEQLEKLLRFIRDWNT--NSRTSHVAQRVLNAILKSHPPEELLKIPGL 105 (141)
T ss_pred HHHHHHHHHHhcccccccchHHHHHHHHHhcCHHHHHHHHHHHHHhhc--ccccHHHHHHHHHHHHHhCCHHHHHccccH
Confidence 445555544 2334444488999999999999999999999986543 344446788888888777662 2 2
Q ss_pred hhhHHHHHHHHHHhh
Q 002658 115 STHVTKIISHIVKRL 129 (896)
Q Consensus 115 ~P~LpkIL~~IlrrL 129 (896)
...+.-++|+--|.+
T Consensus 106 ~~~le~lipYteRH~ 120 (141)
T PF08625_consen 106 KEILEALIPYTERHF 120 (141)
T ss_pred HHHHHHHhhhHHHHH
Confidence 334555555554444
No 370
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=26.57 E-value=7.9e+02 Score=32.62 Aligned_cols=113 Identities=14% Similarity=0.235 Sum_probs=77.5
Q ss_pred HHHHHHHHhhhc-----CCCChhhHHHHHHHHHHHHHHhcccc--hhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHH
Q 002658 77 LPMLLNCLYESS-----NDPKPAVKKESVRLLALVCELHSELT--STHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSK 149 (896)
Q Consensus 77 Lp~fLs~L~es~-----ss~k~~vRKeAIllLG~IAeg~~d~I--~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~ 149 (896)
+..+|..|+... .+-.+..|-.|+..||.-+..+++.. ..|| -+|=..|.|....||..|..+|-.|..
T Consensus 280 i~~mi~~if~sVFVHRYRDV~~~IRaiCiqeLgiWi~~yP~~Fl~dsYL----KYiGWtLsDk~~~VRl~~lkaL~~L~e 355 (1048)
T KOG2011|consen 280 IESMINDIFDSVFVHRYRDVDPDIRAICIQELGIWIKSYPEIFLSDSYL----KYIGWTLSDKNGTVRLRCLKALIKLYE 355 (1048)
T ss_pred HHHHHHHHhhheeeeecccCchHHHHHHHHHHHHHHHhccHHHhcchHH----HHhcceeecCccHHHHHHHHHHHHHHh
Confidence 556677776652 57789999999999999999999874 3344 567889999999999999999998888
Q ss_pred HHhcccccCCchhHhhhHHHHHHHH-hcCCHhHHHH-HHHHHHHHHHh
Q 002658 150 LYLNGKEENNGTVVGLFVKPLFEAM-MEQNKGVQSG-AAMCMAKMVEC 195 (896)
Q Consensus 150 ~li~~~~e~~~~~~~~lL~pL~eaL-~Eqnk~VQ~g-AasALAkIIE~ 195 (896)
.= .-....+....-|-..+++.. -+-+..|... -..|+......
T Consensus 356 ~~--~~~~~L~lFtsRFK~RIVeMadrd~~~~Vrav~L~~~~~~~~~g 401 (1048)
T KOG2011|consen 356 KD--EDKDKLELFTSRFKDRIVEMADRDRNVSVRAVGLVLCLLLSSSG 401 (1048)
T ss_pred cc--ccchHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHhccc
Confidence 72 111111233444445555555 3556777754 34455544443
No 371
>KOG1988 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.33 E-value=1.3e+03 Score=30.15 Aligned_cols=88 Identities=14% Similarity=0.214 Sum_probs=54.2
Q ss_pred CChhHHHHHHHHHHHHH-hcCCCCC-HHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhccc-chhhHHHHHHHHHHhh
Q 002658 53 ADRDTHQIAIEDLEKTI-QTLSQES-LPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSEL-TSTHVTKIISHIVKRL 129 (896)
Q Consensus 53 sDRDT~k~Aa~eLD~La-~~L~pd~-Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~-I~P~LpkIL~~IlrrL 129 (896)
|++ -.+.++...++-- .++++-. ..-|+.++.-.+.+-+|..|.-.++.||.+...-++. ..+|+ |-.+|
T Consensus 75 Gn~-llRf~V~rv~~q~g~hln~v~n~aE~lrri~~V~hsnDp~aRAllL~ilg~~s~lipEfn~~hhl------Ir~sl 147 (970)
T KOG1988|consen 75 GNN-LLRFAVLRVDQQSGKHLNKVLNGAEFLRRIFYVDHSNDPVARALLLRILGQLSALIPEFNQVHHL------IRISL 147 (970)
T ss_pred CcH-HHHHHHHHHHhhccccchhhhhhhhhhheeEEeecCCCHHHHHHHHHHHHHhhhhcccccchhHH------HHHHh
Confidence 444 4555555444421 2343311 4456777777777888999999999999999998887 56655 55566
Q ss_pred cCC-ChHHHHHHHHHHHHHH
Q 002658 130 KDS-DSGMKEACRDSIGSLS 148 (896)
Q Consensus 130 kDp-Ds~VR~Ac~~aLG~LA 148 (896)
..+ +-.+|.|+ .+.+.++
T Consensus 148 ~S~helE~eaa~-~Aaa~Fa 166 (970)
T KOG1988|consen 148 DSHHELEVEAAE-FAAACFA 166 (970)
T ss_pred cCccchhhHHHH-HHHhhhh
Confidence 333 44566443 3333333
No 372
>PF03542 Tuberin: Tuberin; InterPro: IPR018515 Initiation of eukaryotic mRNA transcription requires melting of promoter DNA with the help of the general transcription factors TFIIE and TFIIH. In higher eukaryotes, the general transcription factor TFIIE consists of two subunits: the large alpha subunit (IPR002853 from INTERPRO) and the small beta (IPR003166 from INTERPRO). TFIIE beta has been found to bind to the region where the promoter starts to open to be single-stranded upon transcription initiation by RNA polymerase II. The approximately 120-residue central core domain of TFIIE beta plays a role in double-stranded DNA binding of TFIIE []. The TFIIE beta central core DNA-binding domain consists of three helices with a beta hairpin at the C terminus, resembling the winged helix proteins. It shows a novel double-stranded DNA-binding activity where the DNA-binding surface locates on the opposite side to the previously reported winged helix motif by forming a positively charged furrow []. This domain is found in Tuberin proteins. ; GO: 0005096 GTPase activator activity, 0043547 positive regulation of GTPase activity
Probab=26.24 E-value=1.1e+03 Score=27.53 Aligned_cols=130 Identities=14% Similarity=0.195 Sum_probs=85.7
Q ss_pred hhHhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhc--C--CCCCHHHHHHHHhhhcCC---------C-----Chhh
Q 002658 34 SHLAMVEMKQKILTSLSKLADRDTHQIAIEDLEKTIQT--L--SQESLPMLLNCLYESSND---------P-----KPAV 95 (896)
Q Consensus 34 ~~~~~~~Lk~rll~~L~KLsDRDT~k~Aa~eLD~La~~--L--~pd~Lp~fLs~L~es~ss---------~-----k~~v 95 (896)
....+-++-+-+++||.+=.|=+.....+..|-...++ | +.+ +..+...|++...+ . +..+
T Consensus 135 ~~l~is~~~~~il~~L~~e~dWeV~s~VL~hLp~qL~Nk~Lf~~~~-I~~L~~~Lc~~i~d~~~~~~l~~~p~~~~~~D~ 213 (356)
T PF03542_consen 135 GYLPISEWFSVILQCLEHETDWEVYSYVLVHLPSQLSNKALFLGAD-IDQLRNALCSMICDRSFLESLSNKPTGFKRADL 213 (356)
T ss_pred eeeeHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhhhhHHhccCc-HHHHHHHHHHHHhcccccccccCCCCCCCHHHH
Confidence 45566777788889998888899999999888777653 2 343 66666666544211 1 1223
Q ss_pred HHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHh
Q 002658 96 KKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMM 175 (896)
Q Consensus 96 RKeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~ 175 (896)
....+..|..++.-|...-...-..|+..+..+|... .-..|..++..-+..+. .....+++.++.-|.
T Consensus 214 ~~~~~~~Ls~LisYh~~~~k~~qd~iV~~l~~GL~s~---~a~~CI~aLtic~~EmP--------~s~~k~L~~iL~kLs 282 (356)
T PF03542_consen 214 QVCVFPVLSALISYHSHFSKQEQDEIVRALESGLGSK---TAKPCIHALTICCYEMP--------DSMKKLLPSILLKLS 282 (356)
T ss_pred HHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHhccC---cHHHHHHHHHHHHHHhH--------HHHHHHHHHHHHHHH
Confidence 3346677777777666555666788999999999773 33556677776666661 235556666666664
No 373
>KOG3723 consensus PH domain protein Melted [Signal transduction mechanisms]
Probab=25.98 E-value=1.1e+03 Score=29.46 Aligned_cols=56 Identities=20% Similarity=0.152 Sum_probs=25.2
Q ss_pred CCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhhcCCC
Q 002658 74 QESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSD 133 (896)
Q Consensus 74 pd~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrLkDpD 133 (896)
|+.+.++|+.|...+.+.+|..|..--.+.-.|.. .-...|.+-+|+++-.|+|++
T Consensus 194 P~~i~PhlP~l~~lL~q~~p~~~~ll~~l~~LI~Q----k~~evL~~ciP~L~g~l~ds~ 249 (851)
T KOG3723|consen 194 PQPINPHLPELLALLSQLEPEQYHLLRLLHVLIKQ----KQLEVLQKCIPFLIGHLKDST 249 (851)
T ss_pred CCccCcccHHHHHHhcCCCHHHHHHHHHHHHHHHh----ccHHHHHHHHHHHHHHhcccc
Confidence 44444555555444445555444332222222222 122345555566666666655
No 374
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=25.88 E-value=2.8e+02 Score=25.50 Aligned_cols=64 Identities=17% Similarity=0.156 Sum_probs=49.9
Q ss_pred HHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhhcCCChHHHHHHHHH
Q 002658 77 LPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDS 143 (896)
Q Consensus 77 Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrLkDpDs~VR~Ac~~a 143 (896)
|.||...+ ....+..+|+-.+.++..+.+.+++.+..=++.|+..+-....|.+..+-..|-.+
T Consensus 19 L~Pf~~i~---~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~ 82 (86)
T PF09324_consen 19 LKPFEYIM---SNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQI 82 (86)
T ss_pred HHHHHHHH---hccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHH
Confidence 44544443 23467899999999999999999999999999999999999998776554444443
No 375
>PF14228 MOR2-PAG1_mid: Cell morphogenesis central region
Probab=25.55 E-value=1.2e+03 Score=31.49 Aligned_cols=56 Identities=13% Similarity=0.263 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHhccc--chhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhc
Q 002658 98 ESVRLLALVCELHSEL--TSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLN 153 (896)
Q Consensus 98 eAIllLG~IAeg~~d~--I~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~ 153 (896)
.+-..|.++++.+.+. ..-...+|+..++-.+.|++..||..+...|..|-.....
T Consensus 519 va~gYF~vlaev~~~~~~~~~~~~~LL~L~Lfklg~~~~eIR~~A~qLL~~Le~R~~~ 576 (1120)
T PF14228_consen 519 VAEGYFTVLAEVFSEREYPPCPFWELLNLVLFKLGDESSEIRSKAMQLLRALEERFFS 576 (1120)
T ss_pred HHHHHHHHHHHHHHcCCCCCCCHHHhHHHHHHhhcCCcHHHHHHHHHHHHHHHHHhhc
Confidence 4455667778877644 2235679999999999999999999999999999877754
No 376
>PF02465 FliD_N: Flagellar hook-associated protein 2 N-terminus; InterPro: IPR003481 The flagellar hook-associated protein 2 (HAP2 or FliD) is the capping protein for the flagella and forms the distal end of the flagella. The protein plays a role in mucin specific adhesion of the bacteria [].; GO: 0009296 flagellum assembly, 0009288 bacterial-type flagellum
Probab=25.38 E-value=1.9e+02 Score=26.80 Aligned_cols=53 Identities=17% Similarity=0.237 Sum_probs=47.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhHhHhhhhhHHHHHHHHH
Q 002658 516 NWLAIQRQLMQLERQQAHLMNMLQDFMGGSHDSMVTLENRVRGLERVVEDMAR 568 (896)
Q Consensus 516 ~l~~Ir~QL~qiE~qQs~L~dlLQ~Fmg~s~~~m~~Le~RV~gLE~~~deis~ 568 (896)
|+..|=+||+++|++....|+-=+.-...-++.+..|.+.+..|--++..+..
T Consensus 5 D~~~lv~~l~~~e~~~~~~l~~~~~~~~~k~sa~~~l~s~l~~l~~~~~~L~~ 57 (99)
T PF02465_consen 5 DTESLVDQLMQAERAPIDRLQQKKTSLEWKQSAYGSLNSKLSTLQSALSDLNS 57 (99)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 67889999999999999888888889999999999999999999988888855
No 377
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=24.72 E-value=7.2e+02 Score=24.95 Aligned_cols=96 Identities=11% Similarity=0.092 Sum_probs=57.9
Q ss_pred hhhHHHHHHHHHHHHhc-cccCc------ccH----HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcchHHHhhHHHH
Q 002658 220 FMAKASLLPVVGSLSQV-GAIAP------QSL----EPLLQSIHECLGSTDWATRKAAADALSALALHSSNLVIDGATST 288 (896)
Q Consensus 220 ~kaK~alL~aIgSLA~v-ga~~~------pyl----e~lLp~L~e~LsddDW~lRKaA~EaLgsLA~avGe~L~Py~~~~ 288 (896)
...|...|+.|.++... |..+. ..+ +.+.+.|...+.+++..+=..++.++..|....+..+....+-+
T Consensus 36 ~~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~ele~~ 115 (168)
T PF12783_consen 36 ERSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLKLELEVF 115 (168)
T ss_pred HHHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667788888888653 33332 122 23456677767666688888899999999988887666665555
Q ss_pred HHHHHhhhcC-C--ChhhHHHHHHHHHHHHHhc
Q 002658 289 LTVLEACRFD-K--IKPVRDSMNEALQLWKKIA 318 (896)
Q Consensus 289 I~~LE~~RfD-K--vKpVRDaA~eALe~WK~la 318 (896)
+..+-..-.+ + .-+.|..+ |+....+.
T Consensus 116 l~~i~~~il~~~~~~~~~k~~~---Le~l~~l~ 145 (168)
T PF12783_consen 116 LSHIILRILESDNSSLWQKELA---LEILRELC 145 (168)
T ss_pred HHHHHHHHHccCCCcHHHHHHH---HHHHHHHH
Confidence 5443322222 1 12366764 45555554
No 378
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=24.43 E-value=6.4e+02 Score=25.40 Aligned_cols=71 Identities=11% Similarity=0.107 Sum_probs=52.8
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcchHHHh------hHHHHHHHHHhhhc---CCChhhHHHHHHHHHHHH
Q 002658 245 EPLLQSIHECLGSTDWATRKAAADALSALALHSSNLVID------GATSTLTVLEACRF---DKIKPVRDSMNEALQLWK 315 (896)
Q Consensus 245 e~lLp~L~e~LsddDW~lRKaA~EaLgsLA~avGe~L~P------y~~~~I~~LE~~Rf---DKvKpVRDaA~eALe~WK 315 (896)
...+..|...|.+.+..+--.|+..|-++....|..|.. |+..+++.+. -++ .....||+=+++.++.|.
T Consensus 37 k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~-~k~~~~~~~~~Vk~kil~li~~W~ 115 (139)
T cd03567 37 QLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVS-PKYLGSRTSEKVKTKIIELLYSWT 115 (139)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhc-cccCCCCCCHHHHHHHHHHHHHHH
Confidence 456666777888888888888888999999999977653 3456666663 222 245779999999999998
Q ss_pred H
Q 002658 316 K 316 (896)
Q Consensus 316 ~ 316 (896)
.
T Consensus 116 ~ 116 (139)
T cd03567 116 L 116 (139)
T ss_pred H
Confidence 5
No 379
>PF05997 Nop52: Nucleolar protein,Nop52; InterPro: IPR010301 Nop52 is believed to be involved in the generation of 28S rRNA [].; GO: 0006364 rRNA processing, 0030688 preribosome, small subunit precursor
Probab=23.88 E-value=3.5e+02 Score=29.07 Aligned_cols=73 Identities=18% Similarity=0.118 Sum_probs=55.8
Q ss_pred HHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHH-hcCCHhHHHHHHHHHHHHHHhcCCC
Q 002658 124 HIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAM-MEQNKGVQSGAAMCMAKMVECASDP 199 (896)
Q Consensus 124 ~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL-~Eqnk~VQ~gAasALAkIIE~a~d~ 199 (896)
.+.+.|...|+.+|+.|...+..+-..-... .....+-.+-+.||=+| ....+.+|..-|.-|+.++...+..
T Consensus 4 ~~~k~LAs~d~~~R~~al~~l~~~l~~~~~~---~~~~~~~kLWKGLfy~mWmsDkpl~Q~~la~~la~l~~~~~~~ 77 (217)
T PF05997_consen 4 KFAKKLASNDKKTRDRALKSLRKWLSKRSQL---LTELDMLKLWKGLFYCMWMSDKPLVQEELAEELASLIHSFPSE 77 (217)
T ss_pred HHHHHhhcCChhHHHHHHHHHHHHHHhcccc---CCHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhcCh
Confidence 3678999999999999998666555444221 02345677889999999 7788899999999999999876443
No 380
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=23.75 E-value=7.1e+02 Score=24.51 Aligned_cols=74 Identities=16% Similarity=0.109 Sum_probs=52.9
Q ss_pred cHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcchHHHhhH--HHHHHHHHhhhcCCC-hh-hHHHHHHHHHHHHH
Q 002658 243 SLEPLLQSIHECLGSTDWATRKAAADALSALALHSSNLVIDGA--TSTLTVLEACRFDKI-KP-VRDSMNEALQLWKK 316 (896)
Q Consensus 243 yle~lLp~L~e~LsddDW~lRKaA~EaLgsLA~avGe~L~Py~--~~~I~~LE~~RfDKv-Kp-VRDaA~eALe~WK~ 316 (896)
.....+..|...|.+.+..+-..|+..|-.+....|..|..++ ..+++.|...-.++. .+ ||+-+++.++-|..
T Consensus 34 ~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 34 GPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 4456677788888888888888899999999999997765443 234444442222221 23 99999999999987
No 381
>KOG3613 consensus Dopey and related predicted leucine zipper transcription factors [Transcription]
Probab=23.58 E-value=5.1e+02 Score=35.91 Aligned_cols=132 Identities=12% Similarity=0.126 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHH---HHHHhcC---CCCCHHHHHHHHhhhc---------CCCChhhHHHHHHHH
Q 002658 39 VEMKQKILTSLSKLADRDTHQIAIEDL---EKTIQTL---SQESLPMLLNCLYESS---------NDPKPAVKKESVRLL 103 (896)
Q Consensus 39 ~~Lk~rll~~L~KLsDRDT~k~Aa~eL---D~La~~L---~pd~Lp~fLs~L~es~---------ss~k~~vRKeAIllL 103 (896)
.-||+.++.++...+ --++....+ ..|+.++ ++..|.-+|.-|.-.. .+.+-.+|-..++-+
T Consensus 1435 kaWrKe~~eLF~D~~---fFqmd~s~l~~W~~Iid~lmt~d~t~f~DLm~ri~~s~s~s~~lftSrd~e~e~ra~~LkRi 1511 (1749)
T KOG3613|consen 1435 KAWRKEFLELFLDNS---FFQMDLSCLRHWSSIIDHLMTHDKTIFNDLMTRISSSQSGSLNLFTSRDQELEQRAMLLKRI 1511 (1749)
T ss_pred HHHHHHHHHHhcCcc---hheeeHHHHHHHHHHHHHHHhCCchHHHHHHHHhhcccccceeeeecchHHHHHHHHHHHhh
Confidence 458888888776542 222223333 4444443 3334777776543221 123455666667667
Q ss_pred HHHHHHhc-ccchhhHHHHHHHHHHhhc-CCChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhc
Q 002658 104 ALVCELHS-ELTSTHVTKIISHIVKRLK-DSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMME 176 (896)
Q Consensus 104 G~IAeg~~-d~I~P~LpkIL~~IlrrLk-DpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~E 176 (896)
..++=+.+ |.-.+|+|.|+..|..-|+ ++++.||.++-=.+..|.=.+ ..++-...||.++--|...+..
T Consensus 1512 af~ifsSp~Dqy~~~lp~iqErl~~~Lrv~~~~~lk~~vFL~~RVLLLR~---Sp~hL~~LWPImv~ELv~vf~q 1583 (1749)
T KOG3613|consen 1512 AFLIFSSPLDQYLGYLPDIQERLADLLRVSQSPKLKKAVFLFFRVLLLRI---SPDHLTSLWPIMVYELVQVFLQ 1583 (1749)
T ss_pred HhheeeCcHHhhhhhchhHHHHHHHhcccCCCchHHHHHHHHHHHHHHhc---CHhhcccchHHHHHHHHHHHHH
Confidence 66655555 6688999999999999999 999999999988888887777 2233346788888777777643
No 382
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=23.53 E-value=7e+02 Score=24.40 Aligned_cols=75 Identities=17% Similarity=0.175 Sum_probs=53.4
Q ss_pred HHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccchhhH-H-HHHHHHHHhhcC---CChHHHHHHHHHHHHHHHHHh
Q 002658 78 PMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHV-T-KIISHIVKRLKD---SDSGMKEACRDSIGSLSKLYL 152 (896)
Q Consensus 78 p~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I~P~L-p-kIL~~IlrrLkD---pDs~VR~Ac~~aLG~LA~~li 152 (896)
-..+.+|...+.+.++.+.--|+.+|..++.-||..+...+ . +.+..+++.+.. .++.||.-+...+...+..+.
T Consensus 36 k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~ 115 (133)
T cd03561 36 KEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESFG 115 (133)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 34466666666777889999999999999999998542211 1 222234444443 478999999999999998883
No 383
>PF04003 Utp12: Dip2/Utp12 Family; InterPro: IPR007148 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]. This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. This domain is found at the C terminus of proteins containing WD40 repeats. These proteins are part of the U3 ribonucleoprotein. In yeast, these proteins are called Utp5, Utp1 or Pwp2, Utp12 or DIP2 Q12220 from SWISSPROT. They interact with snoRNA U3 and with MPP10 []. Pwp2 is an essential Saccharomyces cerevisiae (Baker's yeast) protein involved in cell separation.
Probab=23.21 E-value=1.5e+02 Score=27.67 Aligned_cols=76 Identities=24% Similarity=0.421 Sum_probs=50.3
Q ss_pred chHHHHHHhhcccc-----cccccChHHHHHHHHHHHHHhh--hchhhhhHHHHHHHHHHHHHhcCCccccccHHHHHHH
Q 002658 782 DDFLLVKLMDRSGP-----VVDQLSNEVANEVLHAIGQFLL--EQNLFDICLSWIQQLVELVLENGPHVLGIPMELKKEL 854 (896)
Q Consensus 782 d~~~lv~lm~~tgp-----v~~~ls~~~~~e~l~~i~~~l~--~~~~~d~~~~w~qq~~~l~~~~g~~~~~~~~~~k~~~ 854 (896)
|+.+|.+-+.++-| ++..|+..-+..+|.+|+..+. +..=...++.|++.++ ..||+-..+.+.+.+ ..
T Consensus 2 d~~ll~~vl~~~~~~~I~~tv~~Lp~~~~~~LL~~l~~~l~~~~~~~~e~~l~Wl~~ll---~~H~~~l~~~~~~~~-~~ 77 (110)
T PF04003_consen 2 DEELLLEVLERIPPSDIENTVRSLPFSYAERLLQFLSERLQTRKSPHVEFLLRWLKALL---KTHGSYLSSSSPELR-PV 77 (110)
T ss_pred HHHHHHHHHhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHhcccCCCchhHHHHHHHHHH---HHHHHHHHhcCHHHH-HH
Confidence 44555555555544 5678999999999999999886 4457888999999865 455555555433333 23
Q ss_pred HHHHHhh
Q 002658 855 LLNLHEA 861 (896)
Q Consensus 855 l~~l~ea 861 (896)
|..|+..
T Consensus 78 L~~L~~~ 84 (110)
T PF04003_consen 78 LRSLQKI 84 (110)
T ss_pred HHHHHHH
Confidence 3444433
No 384
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=22.75 E-value=1.4e+03 Score=27.47 Aligned_cols=100 Identities=17% Similarity=0.117 Sum_probs=52.4
Q ss_pred HhHHHHHHHHHHHHHHh-cCCCC-chhHHHHHHHHHHH-hcCCchhhHHHHHHHHHHHHhcc-ccCcccHHHHHHHHHHh
Q 002658 179 KGVQSGAAMCMAKMVEC-ASDPP-VVAFQKLCARICKL-LSNQNFMAKASLLPVVGSLSQVG-AIAPQSLEPLLQSIHEC 254 (896)
Q Consensus 179 k~VQ~gAasALAkIIE~-a~d~~-~~yL~~LlPRL~kL-Lks~s~kaK~alL~aIgSLA~vg-a~~~pyle~lLp~L~e~ 254 (896)
..+..-=.+||...+=. ++..+ ..|+..|+..++.. +.-..-.. =|+++-++|.+. -.-.......||.+++.
T Consensus 211 ~d~VdRfisCl~~AvPfFargapSskf~~y~n~~~ip~~fdkl~e~r---kL~lLK~lAEMss~ttaq~a~q~Lpsi~el 287 (460)
T KOG2213|consen 211 ADYVDRFISCLLMAVPFFARGAPSSKFVEYLNKHIIPHHFDKLTEER---KLDLLKALAEMSSYTTAQAARQMLPSIVEL 287 (460)
T ss_pred hHHHHHHHHHHHHhhhhhhcCCchhHHHHHHHhhhcccccccchHHH---HHHHHHHHHHhCccchHHHHHHHHHHHHHH
Confidence 33333444444444332 22222 34677777766655 11111222 366677776544 22345566677777776
Q ss_pred hCC------CCHHHHHHHHHHHHHHHHhcchHH
Q 002658 255 LGS------TDWATRKAAADALSALALHSSNLV 281 (896)
Q Consensus 255 Lsd------dDW~lRKaA~EaLgsLA~avGe~L 281 (896)
|.. +-...-..-+|||-++..++|.+.
T Consensus 288 Lk~yMpa~kt~ee~~fsyvEClly~~h~Lg~k~ 320 (460)
T KOG2213|consen 288 LKEYMPAPKTGEEMQFSYVECLLYALHHLGHKK 320 (460)
T ss_pred HHHhcccCCccHHHHHHHHHHHHHHHHHHhhcC
Confidence 433 334445566788888877777433
No 385
>PF14911 MMS22L_C: S-phase genomic integrity recombination mediator, C-terminal
Probab=22.72 E-value=1.3e+03 Score=27.19 Aligned_cols=159 Identities=17% Similarity=0.234 Sum_probs=80.3
Q ss_pred CChhhHHHHHHHHHHH-HHHhcccchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHH
Q 002658 91 PKPAVKKESVRLLALV-CELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKP 169 (896)
Q Consensus 91 ~k~~vRKeAIllLG~I-Aeg~~d~I~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~p 169 (896)
.+...|+-.+..+... .+.-+....||+..++.+|...++.-. +.. -+.+ ......++++
T Consensus 200 ~~~~l~~~il~~i~~~fl~~~~~~p~p~l~~vL~fl~~Ll~~~~---~~~----~~~~------------~~~~~~~lp~ 260 (373)
T PF14911_consen 200 RNEELRKFILQVIRSNFLEFKGSAPPPRLASVLAFLQQLLKRLQ---RQN----ENQI------------LTLLRLVLPS 260 (373)
T ss_pred hhhHHHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHhcC---ccc----chhH------------HHHHHHhhHH
Confidence 3444555544433222 122223367899999998888876621 000 0001 1225668888
Q ss_pred HHHHHh--cCCHhHHHHHHHHHHHHHHhcCCCCc-hhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhccccCcccHHH
Q 002658 170 LFEAMM--EQNKGVQSGAAMCMAKMVECASDPPV-VAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEP 246 (896)
Q Consensus 170 L~eaL~--Eqnk~VQ~gAasALAkIIE~a~d~~~-~yL~~LlPRL~kLLks~s~kaK~alL~aIgSLA~vga~~~pyle~ 246 (896)
|++++. +..+.+-.-|...+..+++....... +.=..+..-|-.+.+.---.-....+..+.++|. .-+..+..
T Consensus 261 lL~c~~~v~e~~~~k~~a~e~l~~mv~~~~~~~~~~~~~~l~s~lrsfvqk~l~~~t~~~f~~l~~vA~---l~p~lV~~ 337 (373)
T PF14911_consen 261 LLECLMLVNEEPQVKKLATELLQYMVESCQVGSSGEPREQLTSVLRSFVQKYLAHYTYQYFQFLEKVAE---LDPQLVIS 337 (373)
T ss_pred HHHHHhhcCCCcchhHHHHHHHHHHHHcccccCcchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH---hCHHHHHH
Confidence 888883 22455556677778888887531111 1111111111111110000001134445555553 44566778
Q ss_pred HHHHHHHhhCC--------CCHHHHHHHHHHHH
Q 002658 247 LLQSIHECLGS--------TDWATRKAAADALS 271 (896)
Q Consensus 247 lLp~L~e~Lsd--------dDW~lRKaA~EaLg 271 (896)
++|.+.+.+.+ .|-.+|++--..+.
T Consensus 338 Lip~i~q~l~~~E~kRG~G~d~~lR~~~~rL~~ 370 (373)
T PF14911_consen 338 LIPTIRQSLKDSERKRGLGRDVALRKALSRLLS 370 (373)
T ss_pred HHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHH
Confidence 88888877665 46777776555444
No 386
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=21.98 E-value=1.9e+02 Score=26.26 Aligned_cols=55 Identities=15% Similarity=0.161 Sum_probs=40.7
Q ss_pred hHHHHHHHHHHHHHHhcccchhhHH--HHHHHHHHhhcC-CChHHHHHHHHHHHHHHHHH
Q 002658 95 VKKESVRLLALVCELHSELTSTHVT--KIISHIVKRLKD-SDSGMKEACRDSIGSLSKLY 151 (896)
Q Consensus 95 vRKeAIllLG~IAeg~~d~I~P~Lp--kIL~~IlrrLkD-pDs~VR~Ac~~aLG~LA~~l 151 (896)
..|+|+-++|.++..-.. .++|+ .+++.|++.... |-..||-+|-.++|-++.-.
T Consensus 3 ~lKaaLWaighIgss~~G--~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~ 60 (73)
T PF14668_consen 3 ELKAALWAIGHIGSSPLG--IQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTE 60 (73)
T ss_pred HHHHHHHHHHhHhcChHH--HHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCH
Confidence 468999999999774221 22333 578888888664 56799999999999888654
No 387
>PF14222 MOR2-PAG1_N: Cell morphogenesis N-terminal
Probab=21.75 E-value=1.6e+03 Score=27.75 Aligned_cols=190 Identities=15% Similarity=0.180 Sum_probs=103.1
Q ss_pred hhhHHHHHHHHHHhhcCCCh--------HHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhcCCHhHHHHHH
Q 002658 115 STHVTKIISHIVKRLKDSDS--------GMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAA 186 (896)
Q Consensus 115 ~P~LpkIL~~IlrrLkDpDs--------~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAa 186 (896)
.....+|...+...|+-.|+ .+|.+..+..+.|...+.+-. +..+-...+.-|..-.+. +.-+-
T Consensus 30 ~~l~~~le~i~F~~lk~~d~~~~~~~~s~~~~~~~~l~AellG~lS~~r-------F~sVsdRF~~eL~~~~~~-~~~~~ 101 (552)
T PF14222_consen 30 EELGDKLEEIVFDQLKTADPVSEQPSTSPLRLANWDLFAELLGVLSEIR-------FVSVSDRFIAELEKLRKD-SNDAE 101 (552)
T ss_pred HHHHHHHHHHHHHHHhccCccccccccchhHHHHHHHHHHHHHHHHhhh-------ChHHHHHHHHHHHHhccc-CCchH
Confidence 34456677777777776665 346566666555555553222 233333333344211110 00233
Q ss_pred HHHHHHHHhcCCCCc-----hhHH---HHHHHHHHHhcCCc--hhhHHHHHHHHHHH----Hhcc--ccCcc----cHHH
Q 002658 187 MCMAKMVECASDPPV-----VAFQ---KLCARICKLLSNQN--FMAKASLLPVVGSL----SQVG--AIAPQ----SLEP 246 (896)
Q Consensus 187 sALAkIIE~a~d~~~-----~yL~---~LlPRL~kLLks~s--~kaK~alL~aIgSL----A~vg--a~~~p----yle~ 246 (896)
.-+..+|.+++..-. +-++ ..|..+.+++...| ..+|-+.-+++..+ |... +...| .++.
T Consensus 102 ~~~~~li~GMr~lrlk~~p~e~~e~s~~Fm~~l~~~f~~~h~~~~ik~A~~~~l~~lLlPvA~~~~~evn~P~W~~~v~~ 181 (552)
T PF14222_consen 102 SKIELLIMGMRYLRLKMYPEEAFEESAEFMQSLAKFFLEAHKKSDIKHAYCEVLVELLLPVAATATAEVNHPKWKEAVET 181 (552)
T ss_pred HHHHHHHhhcceeeecCCCHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHH
Confidence 345667777743221 2232 35666677776554 22676666665555 2222 22233 3444
Q ss_pred HHHHHHHhhCC-CCHHHHHHHHHHHHHHHHhcc-hHHHhhHH-HHHHHHHhhhcCCChhhHHHHHHHHH--HHHHh
Q 002658 247 LLQSIHECLGS-TDWATRKAAADALSALALHSS-NLVIDGAT-STLTVLEACRFDKIKPVRDSMNEALQ--LWKKI 317 (896)
Q Consensus 247 lLp~L~e~Lsd-dDW~lRKaA~EaLgsLA~avG-e~L~Py~~-~~I~~LE~~RfDKvKpVRDaA~eALe--~WK~l 317 (896)
+.+.+.+.+.. ..|.. +.-.+.++....+ +.|...-- .||+.+...--|| ..|-++++++. +|--+
T Consensus 182 i~~~~~~~~~K~khw~~---afPL~t~lLCvS~~e~F~~~W~~~~i~~~~~klKdk--~~r~~~l~~l~RLlWvYL 252 (552)
T PF14222_consen 182 IYPRAAKMMSKPKHWNV---AFPLVTTLLCVSPKEFFLSNWLPSLIESLISKLKDK--ETRPVALECLSRLLWVYL 252 (552)
T ss_pred HHHHHHHHHhCcchhhh---HHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhhcCCh--hhhHHHHHHHHHHHHHHH
Confidence 45555555544 46775 5555666666666 88887777 5887776655555 78988887775 56666
No 388
>PF08095 Toxin_25: Hefutoxin family; InterPro: IPR012630 This family consists of the hefutoxins that are found in the venom of the scorpion Heterometrus fulvipes (Indian black scorpion). These toxins, kappa-hefutoxin1 and kappa-hefutoxin2, exhibit no homology to any known toxins. The hefutoxins are potassium channel toxins [].; GO: 0009405 pathogenesis, 0005576 extracellular region; PDB: 1HP9_A.
Probab=21.28 E-value=41 Score=23.68 Aligned_cols=17 Identities=47% Similarity=0.642 Sum_probs=12.1
Q ss_pred CCCcchhhhhhccchhHH
Q 002658 697 EGPSARSVWQASKDEATL 714 (896)
Q Consensus 697 ~g~~ars~w~ask~~a~~ 714 (896)
-|+ -||-|+|-.||.|-
T Consensus 2 ~~c-yrscwk~g~deetc 18 (22)
T PF08095_consen 2 FGC-YRSCWKAGHDEETC 18 (22)
T ss_dssp --T-TTHHHHHHS-TTHH
T ss_pred cch-HHHHHHccCcHHHH
Confidence 355 69999999999874
No 389
>PHA01351 putative minor structural protein
Probab=21.25 E-value=4.9e+02 Score=33.00 Aligned_cols=33 Identities=0% Similarity=-0.035 Sum_probs=17.6
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcC
Q 002658 185 AAMCMAKMVECASDPPVVAFQKLCARICKLLSN 217 (896)
Q Consensus 185 AasALAkIIE~a~d~~~~yL~~LlPRL~kLLks 217 (896)
+..+|+.++.+.......++..++.-++..|.+
T Consensus 120 ~~~s~~~~~~~i~n~~~q~~~~~isd~~~~~~~ 152 (1070)
T PHA01351 120 FINSAYSFFQNVANDFAQIISGVISDFLNFFGA 152 (1070)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444455555554444445555566666666654
No 390
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=21.02 E-value=7.6e+02 Score=24.75 Aligned_cols=73 Identities=7% Similarity=0.090 Sum_probs=51.4
Q ss_pred cHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHHHHhcchHHHh------hHHH-HHHHHHhhhcCCChhhHHHHHHHHHHH
Q 002658 243 SLEPLLQSIHECLGS-TDWATRKAAADALSALALHSSNLVID------GATS-TLTVLEACRFDKIKPVRDSMNEALQLW 314 (896)
Q Consensus 243 yle~lLp~L~e~Lsd-dDW~lRKaA~EaLgsLA~avGe~L~P------y~~~-~I~~LE~~RfDKvKpVRDaA~eALe~W 314 (896)
.-...+..|...|.. .+..+-.-|+..|-+++...|..|.. |++. +++.+. -+.+....|++-+++.++-|
T Consensus 35 ~~k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~-~~~~~~~~Vk~kil~li~~W 113 (141)
T cd03565 35 GPKDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLIN-PKNNPPTIVQEKVLALIQAW 113 (141)
T ss_pred cHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHc-ccCCCcHHHHHHHHHHHHHH
Confidence 344667777777764 57777777899999999999977764 4454 444443 23334457999999999999
Q ss_pred HH
Q 002658 315 KK 316 (896)
Q Consensus 315 K~ 316 (896)
..
T Consensus 114 ~~ 115 (141)
T cd03565 114 AD 115 (141)
T ss_pred HH
Confidence 85
No 391
>KOG1988 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.97 E-value=2e+03 Score=28.65 Aligned_cols=206 Identities=14% Similarity=0.100 Sum_probs=104.9
Q ss_pred hhhcCCCChhhHHHHHHHHHHHHHHhcccchh--hHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchh
Q 002658 85 YESSNDPKPAVKKESVRLLALVCELHSELTST--HVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTV 162 (896)
Q Consensus 85 ~es~ss~k~~vRKeAIllLG~IAeg~~d~I~P--~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~ 162 (896)
-+....-+-..|=..++.++ -++..+.+ ....++..|..--.-.||.-|..+..++|+++..+.+
T Consensus 69 aDaF~~Gn~llRf~V~rv~~----q~g~hln~v~n~aE~lrri~~V~hsnDp~aRAllL~ilg~~s~lipE--------- 135 (970)
T KOG1988|consen 69 ADAFPVGNNLLRFAVLRVDQ----QSGKHLNKVLNGAEFLRRIFYVDHSNDPVARALLLRILGQLSALIPE--------- 135 (970)
T ss_pred HHHhccCcHHHHHHHHHHHh----hccccchhhhhhhhhhheeEEeecCCCHHHHHHHHHHHHHhhhhccc---------
Confidence 33343334455555555554 23333322 2233344444445557899999999999999999822
Q ss_pred HhhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCch--hhHHHHHHHHHHHHhccccC
Q 002658 163 VGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNF--MAKASLLPVVGSLSQVGAIA 240 (896)
Q Consensus 163 ~~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~a~d~~~~yL~~LlPRL~kLLks~s~--kaK~alL~aIgSLA~vga~~ 240 (896)
+...=-.+...|..+..---++|+.|.+++++-..+.. -.||-++-.++..+.. +.|-.++.++.-+..-....
T Consensus 136 fn~~hhlIr~sl~S~helE~eaa~~Aaa~Faa~sk~FA----~si~gkis~mIef~d~~~~mkL~li~Vfs~M~c~at~A 211 (970)
T KOG1988|consen 136 FNQVHHLIRISLDSHHELEVEAAEFAAACFAAQSKDFA----CSICGKISDMIEFLDLPVPMKLSLIPVFSHMHCHATGA 211 (970)
T ss_pred ccchhHHHHHHhcCccchhhHHHHHHHhhhhhhhhhhH----HHHHHHHHHHhhcccCCCCcchhHhHHHHHhcchhhhh
Confidence 11122234566655555555788888888887664432 2467777777776533 34445555555443111122
Q ss_pred cccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcchHHHhhHHHHHH-HHHhhhcCCChhhHHHHHHHHHHH
Q 002658 241 PQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSSNLVIDGATSTLT-VLEACRFDKIKPVRDSMNEALQLW 314 (896)
Q Consensus 241 ~pyle~lLp~L~e~LsddDW~lRKaA~EaLgsLA~avGe~L~Py~~~~I~-~LE~~RfDKvKpVRDaA~eALe~W 314 (896)
...+..+|..+...-+.+. - -+-+.++..+|...-..+ ...+. .++...+|+-++||-.+++-+.+.
T Consensus 212 ~ra~~l~m~lv~~tps~d~-~--v~fL~stT~Lasrs~~ai----~eq~d~l~q~~ked~~kivr~~vl~kl~~L 279 (970)
T KOG1988|consen 212 SRAFGLCMSLVSGTPSIDR-V--VAFLYSTTNLASRSLVAI----SEQSDVLLQFLKEDERKIVRLKVLRKLDFL 279 (970)
T ss_pred HHHHHHHHHHhcCCCcccc-e--eeehhhhHHHHHHHHHHh----HHHHHHHHHhhcCCchhHHHHHHHHHHHHH
Confidence 3334444444433322211 0 011222222322221111 11222 334566788888888766555553
No 392
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=20.95 E-value=52 Score=23.75 Aligned_cols=27 Identities=22% Similarity=0.522 Sum_probs=17.6
Q ss_pred hHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhhcC
Q 002658 95 VKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKD 131 (896)
Q Consensus 95 vRKeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrLkD 131 (896)
+|.+|..+||.+.. +.-++.+++.|+|
T Consensus 1 VR~~Aa~aLg~igd----------~~ai~~L~~~L~d 27 (27)
T PF03130_consen 1 VRRAAARALGQIGD----------PRAIPALIEALED 27 (27)
T ss_dssp HHHHHHHHHGGG-S----------HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCC----------HHHHHHHHHHhcC
Confidence 68899999988766 4445555555543
No 393
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=20.60 E-value=2.8e+02 Score=26.12 Aligned_cols=46 Identities=24% Similarity=0.342 Sum_probs=36.4
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhHhHhhhhhHHHHHHH
Q 002658 513 NKGNWLAIQRQLMQLERQQAHLMNMLQDFMGGSHDSMVTLENRVRGLERVVEDM 566 (896)
Q Consensus 513 ~~~~l~~Ir~QL~qiE~qQs~L~dlLQ~Fmg~s~~~m~~Le~RV~gLE~~~dei 566 (896)
......-|++.+.+++.+...|--.||. +.-+|..|..||-+|+++
T Consensus 40 ~~~~~~~l~~~~~~l~~k~~~l~~~l~~--------Id~Ie~~V~~LE~~v~~L 85 (99)
T PF10046_consen 40 MKDIAAGLEKNLEDLNQKYEELQPYLQQ--------IDQIEEQVTELEQTVYEL 85 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHH
Confidence 3455677888888888888888777774 788999999999987654
No 394
>PHA02836 putative transmembrane protein; Provisional
Probab=20.31 E-value=1.1e+02 Score=30.97 Aligned_cols=65 Identities=12% Similarity=0.221 Sum_probs=43.5
Q ss_pred HHHHhcCCCCC-HHHHHHHHhhhcCCCChhhH-HHHHHHHHHHHHHhccc-chhhHHHHHHHHHHhhcCC
Q 002658 66 EKTIQTLSQES-LPMLLNCLYESSNDPKPAVK-KESVRLLALVCELHSEL-TSTHVTKIISHIVKRLKDS 132 (896)
Q Consensus 66 D~La~~L~pd~-Lp~fLs~L~es~ss~k~~vR-KeAIllLG~IAeg~~d~-I~P~LpkIL~~IlrrLkDp 132 (896)
+-++..|+.+. ...+..+|....+. +... -.-+=+||.++|.||.. +..|++.|||.|...|.|.
T Consensus 74 ~lL~~dL~~~g~~~Rl~kfi~sn~n~--sy~~~LtLiG~~gyise~wGk~k~~kYI~~im~l~fnfl~dn 141 (153)
T PHA02836 74 NLLTSNLSKKGFISRFKKYLYSNYDV--SYVSALTLIGIIGYISECCGKYGLEKYIQDLLLLLFNFLDDN 141 (153)
T ss_pred hhhhcccCcccHHHHHHHHHHhcccc--ccchHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHcccc
Confidence 55556666444 55666666653221 1111 12455788999999966 8999999999999999875
No 395
>PF11264 ThylakoidFormat: Thylakoid formation protein; InterPro: IPR017499 Psp29, originally designated sll1414 (P73956 from SWISSPROT) in Synechocystis sp. (strain PCC 6803), is found universally in Cyanobacteria and in Arabidopsis. It was isolated and partially sequenced from purified photosystem II (PS II) in Synechocystis. While its function is unknown, mutant studies show an impairment in photosystem II biogenesis and/or stability, rather than in PS II core function.; GO: 0010027 thylakoid membrane organization, 0015979 photosynthesis, 0009523 photosystem II
Probab=20.09 E-value=1.1e+03 Score=25.67 Aligned_cols=59 Identities=10% Similarity=0.088 Sum_probs=39.6
Q ss_pred HHHHH-HHHHHHHHhcCCCC-CHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccch
Q 002658 57 THQIA-IEDLEKTIQTLSQE-SLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTS 115 (896)
Q Consensus 57 T~k~A-a~eLD~La~~L~pd-~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I~ 115 (896)
....+ +...|++.+.++|+ +...++.+|+.......-.+|+.|-.+...+.......+.
T Consensus 46 lfalG~vt~fd~fm~GY~p~~~~~~If~Alc~a~~~dp~~~r~dA~~l~~~a~~~s~~~l~ 106 (216)
T PF11264_consen 46 LFALGLVTVFDRFMQGYPPEEDKDSIFNALCQALGFDPEQYRQDAEKLEEWAKGKSIEDLL 106 (216)
T ss_pred hHHhhHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 44444 35789999999665 4889999999888655566777777666544443323343
Done!