Query 002658
Match_columns 896
No_of_seqs 172 out of 417
Neff 4.9
Searched_HMMs 29240
Date Tue Mar 26 21:22:41 2013
Command hhsearch -i /local_scratch/syshi/lefta3m2/002658.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H2_63-67//hhsearch_pdb/002658hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fdd_A Transportin-1; heat rep 1.0 1 1 186.9 24.1 268 40-320 10-286 (852)
2 1u6g_C TIP120 protein, CAND1; 1.0 1 1 186.8 22.4 272 43-320 6-288 (1230)
3 4fdd_A Transportin-1; heat rep 1.0 1 1 175.9 27.2 269 37-313 87-385 (852)
4 2bpt_A Importin beta-1 subunit 1.0 1 1 173.4 28.2 266 44-320 5-296 (861)
5 1qgr_A Protein (importin beta 1.0 1 1 166.8 26.4 263 44-320 2-289 (876)
6 2qk1_A Protein STU2; STU2P, XM 1.0 1 1 161.7 19.6 201 84-288 21-234 (249)
7 2qk2_A LP04448P; mini spindles 1.0 1 1 159.5 18.9 202 77-288 13-219 (242)
8 1u6g_C TIP120 protein, CAND1; 1.0 1 1 157.7 20.6 252 55-313 100-400 (1230)
9 2bpt_A Importin beta-1 subunit 1.0 1 1 154.5 30.6 274 36-318 91-397 (861)
10 1wa5_C Importin alpha RE-expor 1.0 1 1 154.2 20.5 264 43-320 5-322 (960)
No 1
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=1.00 E-value=1 Score=186.94 Aligned_cols=268 Identities=13% Similarity=0.101 Sum_probs=230.0
Q ss_pred HHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCC-HH
Q ss_conf 9999999999707--99257999999999997308999778999998622299990668999999999999821002-45
Q 002658 40 EMKQKILTSLSKL--ADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELT-ST 116 (896)
Q Consensus 40 ~Lk~rll~~L~KL--sDRDT~k~A~~eLD~ia~~L~pd~Lp~lLs~L~es~ss~ks~vRKeAIlLLG~iAegh~d~i-~P 116 (896)
+-.+++.++|... +|.++++.|.+.|+++.. .| .+..+|..|.....+.+..+|..|..+|++....++..+ ..
T Consensus 10 ~~~~~l~~~l~~~~s~d~~~r~~Ae~~L~~~~~--~p-~~~~~l~~il~~~~~~~~~vR~~a~~~Lkn~i~~~w~~~~~~ 86 (852)
T 4fdd_A 10 QGLQQILQLLKESQSPDTTIQRTVQQKLEQLNQ--YP-DFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNG 86 (852)
T ss_dssp HHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHTT--SH-HHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTTSGGGCCHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--CC-CHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHH
T ss_conf 239999999998739498999999999999870--99-889999999856688986799999999999898744779999
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHC
Q ss_conf 69999999997435999678999999999999997316666870337666999999982399869999999999999814
Q 002658 117 HVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECA 196 (896)
Q Consensus 117 ~LpkIIs~IirrLkDpDs~VR~Aa~daIG~La~~li~~~~~~~~~~~~~lLkPLleaL~eqnk~VQ~gAAsALAkIIE~a 196 (896)
....|...+++.|.|+++.||..++.+++.++... . ...|+.+++.|++.+.+.+..++.+|+.||..+++..
T Consensus 87 ~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~ia~~~---~----~~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~ 159 (852)
T 4fdd_A 87 VTDFIKSECLNNIGDSSPLIRATVGILITTIASKG---E----LQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDS 159 (852)
T ss_dssp HHHHHHHHHHTTTTCSSHHHHHHHHHHHHHHHHHT---T----TTTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHC---C----CCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999874998999999999999999864---8----1356899999999870999899999999999999985
Q ss_pred CCC-----CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC-CCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 999-----92248999999999712984464999999999998402-227222899999999964799999999999999
Q 002658 197 SDP-----PVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVG-AIAPQSLEPLLQSIHECLGSTDWATRKAAADAL 270 (896)
Q Consensus 197 ~d~-----~~~yL~~LiPRLlkLLksps~kaK~alLsaIgSLa~vg-a~~~pyld~lLp~L~e~Lss~DW~vRKaAaEaL 270 (896)
+.. ...+++.++|.|++++++++..+|..++.+++.++... ....++++.+++.|+..+.+++..+|+.||++|
T Consensus 160 ~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L 239 (852)
T 4fdd_A 160 AEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRAL 239 (852)
T ss_dssp TTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHH
T ss_pred HHHHCHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 78756343133299999999998567978999999999999986463879988999999999871799778999999999
Q ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf 99998623679953989999998621198723489999999999984058
Q 002658 271 SALALHSSNLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQLWKKIAGK 320 (896)
Q Consensus 271 gsLA~avge~L~Py~~siI~aLE~~RfDKvKpVRDaa~eALelWK~I~~~ 320 (896)
+.++...++.+.||+..++.++..+..|+.+.||.. |+++|..++..
T Consensus 240 ~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~---a~e~l~~l~~~ 286 (852)
T 4fdd_A 240 VMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALE---ACEFWLTLAEQ 286 (852)
T ss_dssp HHHHHHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHH---HHHHHHHHTTS
T ss_pred HHHHHHCHHHHHHHHHHHHHHHHHHCCCCCHHHHHH---HHHHHHHHHCC
T ss_conf 999985779899889999999998706996899999---99999998603
No 2
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=1.00 E-value=1 Score=186.83 Aligned_cols=272 Identities=15% Similarity=0.178 Sum_probs=223.7
Q ss_pred HHHHHHHHCC--CCHHHHHHHHHHHHHHHHC----CCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHH
Q ss_conf 9999999707--9925799999999999730----899977899999862229999066899999999999982100245
Q 002658 43 QKILTSLSKL--ADRDTHQIAIEDLEKTIQT----LSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTST 116 (896)
Q Consensus 43 ~rll~~L~KL--sDRDT~k~A~~eLD~ia~~----L~pd~Lp~lLs~L~es~ss~ks~vRKeAIlLLG~iAegh~d~i~P 116 (896)
+.+.++|.++ .|.+.+++|...|...... +++.....++..|.+...+.++.+|++++++|+.+++.+++ +
T Consensus 6 ~~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~---~ 82 (1230)
T 1u6g_C 6 YHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE---Y 82 (1230)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH---H
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCH---H
T ss_conf 6999999755898785999999999999741665787567999999999986699989999999999999975879---8
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCC--CCCCCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHH
Q ss_conf 699999999974359996789999999999999973166--66870337666999999982-399869999999999999
Q 002658 117 HVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGK--EENNGTVVGLFVKPLFEAMM-EQNKGVQSGAAMCMAKMV 193 (896)
Q Consensus 117 ~LpkIIs~IirrLkDpDs~VR~Aa~daIG~La~~li~~~--~~~~~~~~~~lLkPLleaL~-eqnk~VQ~gAAsALAkII 193 (896)
+++.|++.++..|.|+++.||.+++.+++.++..+.... .......|+.+++.|++.+. .++..++.+|+.+|..++
T Consensus 83 ~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~ 162 (1230)
T 1u6g_C 83 QVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADML 162 (1230)
T ss_dssp HHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf 99999999999866983889999999999999967974444411788999999999998757884679999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHC-CCCCCCCHHHHHHHHHHHHCCC-CHHHHHHHHHHHH
Q ss_conf 8149999224899999999971298446499999999999840-2227222899999999964799-9999999999999
Q 002658 194 ECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQV-GAIAPQSLEPLLQSIHECLGST-DWATRKAAADALS 271 (896)
Q Consensus 194 E~a~d~~~~yL~~LiPRLlkLLksps~kaK~alLsaIgSLa~v-ga~~~pyld~lLp~L~e~Lss~-DW~vRKaAaEaLg 271 (896)
+..+....+|++.+++.|++.|.+++..+|..++.+++.++.. +..+ ++.+|+.|.+.|.+. ++.+|+.++++|+
T Consensus 163 ~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~---~~~~l~~l~~~L~~~~~~~~r~~a~~~l~ 239 (1230)
T 1u6g_C 163 SRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIV---FVDLIEHLLSELSKNDSMSTTRTYIQCIA 239 (1230)
T ss_dssp HHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-------CTTHHHHHHHHHHHTCSSCSCTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHH---HHHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 982767788799999999998759968999999999999998568999---99999999998616775568999999999
Q ss_pred HHHHHCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf 9998623679953989999998621198723489999999999984058
Q 002658 272 ALALHSSNLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQLWKKIAGK 320 (896)
Q Consensus 272 sLA~avge~L~Py~~siI~aLE~~RfDKvKpVRDaa~eALelWK~I~~~ 320 (896)
.|+...|+.|.||+..++..+.....|..+.||+.+.++++.|-...+.
T Consensus 240 ~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~ 288 (1230)
T 1u6g_C 240 AISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPK 288 (1230)
T ss_dssp HHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCHH
T ss_conf 9999868989988999999999986689778999999999999997848
No 3
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=1.00 E-value=1 Score=175.91 Aligned_cols=269 Identities=14% Similarity=0.158 Sum_probs=202.3
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCH-
Q ss_conf 6999999999999707992579999999999973089997789999986222999906689999999999998210024-
Q 002658 37 AMVEMKQKILTSLSKLADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTS- 115 (896)
Q Consensus 37 ~~~~Lk~rll~~L~KLsDRDT~k~A~~eLD~ia~~L~pd~Lp~lLs~L~es~ss~ks~vRKeAIlLLG~iAegh~d~i~- 115 (896)
....+|..++.+|.. .+...++.++..+-.++....+...+-+++.|.+...+.++.+|+.++.+|+.+++..++.+.
T Consensus 87 ~~~~ik~~ll~~l~~-~~~~vr~~~a~~i~~ia~~~~~~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~ 165 (852)
T 4fdd_A 87 VTDFIKSECLNNIGD-SSPLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDS 165 (852)
T ss_dssp HHHHHHHHHHTTTTC-SSHHHHHHHHHHHHHHHHHTTTTTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCH
T ss_conf 999999999998749-9899999999999999986481356899999999870999899999999999999985787563
Q ss_pred ----HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf ----5699999999974359996789999999999999973166668703376669999999823998699999999999
Q 002658 116 ----THVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAK 191 (896)
Q Consensus 116 ----P~LpkIIs~IirrLkDpDs~VR~Aa~daIG~La~~li~~~~~~~~~~~~~lLkPLleaL~eqnk~VQ~gAAsALAk 191 (896)
.++..+++.+++.|+|+++.||.+++++++.++....+. ....++.+++.|+..+.+.+..++..|+.||..
T Consensus 166 ~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~----~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~ 241 (852)
T 4fdd_A 166 DVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQA----LMLHIDSFIENLFALAGDEEPEVRKNVCRALVM 241 (852)
T ss_dssp CSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHH----HHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHH
T ss_pred HHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHH----HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 4313329999999999856797899999999999998646387----998899999999987179977899999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHHHHHH-----------CC
Q ss_conf 9981499992248999999999712984464999999999998402---227222899999999964-----------79
Q 002658 192 MVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVG---AIAPQSLEPLLQSIHECL-----------GS 257 (896)
Q Consensus 192 IIE~a~d~~~~yL~~LiPRLlkLLksps~kaK~alLsaIgSLa~vg---a~~~pyld~lLp~L~e~L-----------ss 257 (896)
+++..++...+|++.+++-+.++++++...+|..++.++.+++... ..+.+|+..++|.|+..+ .+
T Consensus 242 l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d 321 (852)
T 4fdd_A 242 LLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGD 321 (852)
T ss_dssp HHHHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC-
T ss_pred HHHHCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCC
T ss_conf 99857798998899999999987069968999999999999860365798878889889999998757867679986698
Q ss_pred -----------CCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf -----------99999999999999999862367995398999999862119872348999999999
Q 002658 258 -----------TDWATRKAAADALSALALHSSNLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQL 313 (896)
Q Consensus 258 -----------~DW~vRKaAaEaLgsLA~avge~L~Py~~siI~aLE~~RfDKvKpVRDaa~eALel 313 (896)
.+|.+|++|+++|+.++...|+.+. +.++..+...-.|....+|++++.++..
T Consensus 322 ~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~~~---~~l~~~l~~~l~~~~~~~R~aa~~alg~ 385 (852)
T 4fdd_A 322 VEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELL---PHILPLLKELLFHHEWVVKESGILVLGA 385 (852)
T ss_dssp -----------CCCCHHHHHHHHHHHHHHHHGGGGH---HHHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHH---HHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 443222456401116999999999999874618789---9999999998559988999999999999
No 4
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=1.00 E-value=1 Score=173.36 Aligned_cols=266 Identities=12% Similarity=0.079 Sum_probs=207.8
Q ss_pred HHHHHHHCC---CCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH-----------
Q ss_conf 999999707---992579999999999973089997789999986222999906689999999999998-----------
Q 002658 44 KILTSLSKL---ADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCEL----------- 109 (896)
Q Consensus 44 rll~~L~KL---sDRDT~k~A~~eLD~ia~~L~pd~Lp~lLs~L~es~ss~ks~vRKeAIlLLG~iAeg----------- 109 (896)
++.++|..+ +|.+.++.|.+.|.++...-.| .+..+|..+... .+..+.+|..|..+|++....
T Consensus 5 ~l~~~L~~~~~s~d~~~r~~Ae~~L~~~~~~~~~-~~~~~l~~il~~-~~~~~~vR~~A~~~lk~~i~~~w~~~~~~~~~ 82 (861)
T 2bpt_A 5 EFAQLLENSILSPDQNIRLTSETQLKKLSNDNFL-QFAGLSSQVLID-ENTKLEGRILAALTLKNELVSKDSVKTQQFAQ 82 (861)
T ss_dssp HHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHCHH-HHHHHHHHHHTC-TTSCHHHHHHHHHHHHTTTCCSSHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCHH-HHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHH
T ss_conf 9999999742693979999999999999851999-999999999837-89986799999999870225757487899997
Q ss_pred HCC--CCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCC-CHHHHHHHH
Q ss_conf 210--02456999999999743599967899999999999999731666687033766699999998239-986999999
Q 002658 110 HSE--LTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQ-NKGVQSGAA 186 (896)
Q Consensus 110 h~d--~i~P~LpkIIs~IirrLkDpDs~VR~Aa~daIG~La~~li~~~~~~~~~~~~~lLkPLleaL~eq-nk~VQ~gAA 186 (896)
++. ........|...++..|.++++.||..++.+++.++.+.... ..|+.+++.|++.+.+. ++.+..+|+
T Consensus 83 ~~~~~l~~~~~~~ik~~ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~------~~w~~ll~~L~~~l~~~~~~~~r~~al 156 (861)
T 2bpt_A 83 RWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPH------GAWPELMKIMVDNTGAEQPENVKRASL 156 (861)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGG------TCCHHHHHHHHHHTSTTSCHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCC------CCCHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 67662999999999999999877996379999999999999846764------554999999999872689789999999
Q ss_pred HHHHHHHHHCCCC---CCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHC-CCCC--CCCHHHHHHHHHHHHCCC
Q ss_conf 9999999814999---9224899999999971298--446499999999999840-2227--222899999999964799
Q 002658 187 MCMAKMVECASDP---PVVAFQKLCARICKLLSNQ--NFMAKASLLPVVGSLSQV-GAIA--PQSLEPLLQSIHECLGST 258 (896)
Q Consensus 187 sALAkIIE~a~d~---~~~yL~~LiPRLlkLLksp--s~kaK~alLsaIgSLa~v-ga~~--~pyld~lLp~L~e~Lss~ 258 (896)
.+|..+++..... ..++++.|++.+...+.++ +..+|..++.+++.++.. +..+ ....+.+++.|.+.+.++
T Consensus 157 ~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 236 (861)
T 2bpt_A 157 LALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAE 236 (861)
T ss_dssp HHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCC
T ss_conf 99999997278435678988999999999841579998789999999999999999987067668999999999986599
Q ss_pred CHHHHHHHHHHHHHHHHHCCHHHHHHHH-HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf 9999999999999999862367995398-9999998621198723489999999999984058
Q 002658 259 DWATRKAAADALSALALHSSNLVIDGAT-STLTVLEACRFDKIKPVRDSMNEALQLWKKIAGK 320 (896)
Q Consensus 259 DW~vRKaAaEaLgsLA~avge~L~Py~~-siI~aLE~~RfDKvKpVRDaa~eALelWK~I~~~ 320 (896)
+|.+|+.++++|+.++...++.+.+|+. .++..+..+..|....||.. ++++|..+...
T Consensus 237 ~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~---a~~~l~~l~~~ 296 (861)
T 2bpt_A 237 DIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASM---TVEFWSTICEE 296 (861)
T ss_dssp CHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHH---HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH---HHHHHHHHHHH
T ss_conf 8899999999999999998899999889999999999873772789999---99999999987
No 5
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=1.00 E-value=1 Score=166.75 Aligned_cols=263 Identities=10% Similarity=0.069 Sum_probs=206.8
Q ss_pred HHHHHHHCC--CCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHC--CCCCHHHHHHHHHHHHHHH-----------H
Q ss_conf 999999707--992579999999999973089997789999986222--9999066899999999999-----------9
Q 002658 44 KILTSLSKL--ADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESS--NDPKPAVKKESVRLLALVC-----------E 108 (896)
Q Consensus 44 rll~~L~KL--sDRDT~k~A~~eLD~ia~~L~pd~Lp~lLs~L~es~--ss~ks~vRKeAIlLLG~iA-----------e 108 (896)
++.++|..+ .|.++++.|...|.++..+ ..+.|+..|.... .+.+..+|..|..+|++.. .
T Consensus 2 ~l~~~L~~~~s~d~~~r~~A~~~L~~~~~~----~~~~~~~~L~~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~ 77 (876)
T 1qgr_A 2 ELITILEKTVSPDRLELEAAQKFLERAAVE----NLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQ 77 (876)
T ss_dssp CHHHHHHGGGCSCHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf 689999976298989999999999998716----8046999999998578998799999999998760554347678998
Q ss_pred HHCCC-CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCC--CHHHHHHH
Q ss_conf 82100-2456999999999743599967899999999999999731666687033766699999998239--98699999
Q 002658 109 LHSEL-TSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQ--NKGVQSGA 185 (896)
Q Consensus 109 gh~d~-i~P~LpkIIs~IirrLkDpDs~VR~Aa~daIG~La~~li~~~~~~~~~~~~~lLkPLleaL~eq--nk~VQ~gA 185 (896)
.++.. .......|...+++.|.++++.+ ..++.+++.++..... ...|+.+++.|+..+.++ ++.++.+|
T Consensus 78 ~~w~~l~~~~~~~ik~~ll~~l~~~~~~~-~~~~~~l~~i~~~~~~------~~~w~~ll~~l~~~l~~~~~~~~~r~~a 150 (876)
T 1qgr_A 78 QRWLAIDANARREVKNYVLHTLGTETYRP-SSASQCVAGIACAEIP------VNQWPELIPQLVANVTNPNSTEHMKEST 150 (876)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHTTTCCSSS-CHHHHHHHHHHHHHGG------GTCCTTHHHHHHHHHHCTTCCHHHHHHH
T ss_pred HHHCCCCHHHHHHHHHHHHHHHCCCCHHH-HHHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf 64406999999999999999867994788-9999999999984676------2256889999999870889879999999
Q ss_pred HHHHHHHHHHC-CCCCCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHH-CCCCCCC--CHHHHHHHHHHHHCCCC
Q ss_conf 99999999814-9999224899999999971298--44649999999999984-0222722--28999999999647999
Q 002658 186 AMCMAKMVECA-SDPPVVAFQKLCARICKLLSNQ--NFMAKASLLPVVGSLSQ-VGAIAPQ--SLEPLLQSIHECLGSTD 259 (896)
Q Consensus 186 AsALAkIIE~a-~d~~~~yL~~LiPRLlkLLksp--s~kaK~alLsaIgSLa~-vga~~~p--yld~lLp~L~e~Lss~D 259 (896)
+.+|..+++.. ++....+++.+++.+...+.++ +..+|..++.+++.++. .+..+.. ..+.+++.+.+.+.+++
T Consensus 151 l~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~ 230 (876)
T 1qgr_A 151 LEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPD 230 (876)
T ss_dssp HHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 99999998745876678679999999998616799988999999999999999999988717899999999998717998
Q ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHHH-HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf 999999999999999862367995398-9999998621198723489999999999984058
Q 002658 260 WATRKAAADALSALALHSSNLVIDGAT-STLTVLEACRFDKIKPVRDSMNEALQLWKKIAGK 320 (896)
Q Consensus 260 W~vRKaAaEaLgsLA~avge~L~Py~~-siI~aLE~~RfDKvKpVRDaa~eALelWK~I~~~ 320 (896)
+.+|..++++|+.++...++.+.||+. .++..+..+..|..+.||. .++++|..++..
T Consensus 231 ~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~---~al~~l~~l~~~ 289 (876)
T 1qgr_A 231 TRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVAL---QGIEFWSNVCDE 289 (876)
T ss_dssp HHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH---HHHHHHHHHHHH
T ss_conf 89999999999999998699999887789999999996387349999---999999999887
No 6
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=161.74 Aligned_cols=201 Identities=11% Similarity=0.091 Sum_probs=175.6
Q ss_pred HHHHCCCCCHHHHHHHHHHHHH-HHHHHCCCC--HHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHC-CCCCC
Q ss_conf 8622299990668999999999-999821002--456999999999743-599967899999999999999731-66668
Q 002658 84 LYESSNDPKPAVKKESVRLLAL-VCELHSELT--STHVTKIISHIVKRL-KDSDSGMKEACRDSIGSLSKLYLN-GKEEN 158 (896)
Q Consensus 84 L~es~ss~ks~vRKeAIlLLG~-iAegh~d~i--~P~LpkIIs~IirrL-kDpDs~VR~Aa~daIG~La~~li~-~~~~~ 158 (896)
+.+...+.+|..|++++..|.. ++++|.+.. ...+..++..+.+.| +|++..||.+++.+++.|+..+ + +.+
T Consensus 21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l-~~~~f-- 97 (249)
T 2qk1_A 21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKL-KTPGF-- 97 (249)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHH-CTTTS--
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC-CCCCC--
T ss_conf 787851687999999999999999745986566742399999999998335898999999999999999762-65454--
Q ss_pred CC-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHC
Q ss_conf 70-33766699999998239986999999999999981499-99224899999999971298446499999999999840
Q 002658 159 NG-TVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASD-PPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQV 236 (896)
Q Consensus 159 ~~-~~~~~lLkPLleaL~eqnk~VQ~gAAsALAkIIE~a~d-~~~~yL~~LiPRLlkLLksps~kaK~alLsaIgSLa~v 236 (896)
. .+...++++|++.+.+..+.|+.++..||.++++.++. ...+|++.++++|+..|++++.++|..++.+|++++..
T Consensus 98 -~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~ 176 (249)
T 2qk1_A 98 -SKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKE 176 (249)
T ss_dssp -CHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf -1878999999999987379779999999999999997301235776999999999987699839999999999999987
Q ss_pred -CC---CCCCCH-HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCC-HHHHHHHHHH
Q ss_conf -22---272228-9999999996479999999999999999998623-6799539899
Q 002658 237 -GA---IAPQSL-EPLLQSIHECLGSTDWATRKAAADALSALALHSS-NLVIDGATST 288 (896)
Q Consensus 237 -ga---~~~pyl-d~lLp~L~e~Lss~DW~vRKaAaEaLgsLA~avg-e~L~Py~~si 288 (896)
+. .+.+|+ +.+||.|.+++.+++..+|.+|+++|+.|+..+| +.|.||++.+
T Consensus 177 ~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~~p~l~~L 234 (249)
T 2qk1_A 177 EKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEHL 234 (249)
T ss_dssp CCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGGGHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_conf 6785066889879999999999866998999999999999999981978789999987
No 7
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=1.00 E-value=1 Score=159.53 Aligned_cols=202 Identities=20% Similarity=0.215 Sum_probs=175.3
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 78999998622299990668999999999999821002456999999999743-59996789999999999999973166
Q 002658 77 LPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRL-KDSDSGMKEACRDSIGSLSKLYLNGK 155 (896)
Q Consensus 77 Lp~lLs~L~es~ss~ks~vRKeAIlLLG~iAegh~d~i~P~LpkIIs~IirrL-kDpDs~VR~Aa~daIG~La~~li~~~ 155 (896)
+..+.+.+.+.+.+.+|..|++++..|..++++|++...+.+.++++.+.++| +|+++.||.+++.+++.|+..+ .+.
T Consensus 13 ~~~l~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l-~~~ 91 (242)
T 2qk2_A 13 LSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGL-AKR 91 (242)
T ss_dssp GGGSCTTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHH-GGG
T ss_pred CCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH-HHH
T ss_conf 0017989996626387899999999999987128888877799999999998456898999999999999999998-661
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 66870337666999999982399869999999999999814999922489999999997129844649999999999984
Q 002658 156 EENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQ 235 (896)
Q Consensus 156 ~~~~~~~~~~lLkPLleaL~eqnk~VQ~gAAsALAkIIE~a~d~~~~yL~~LiPRLlkLLksps~kaK~alLsaIgSLa~ 235 (896)
+ ..++..++++|++.+.++++.|+.+|+.||..+++..+ ++.++|.|...|++.+.++|..++..|+.++.
T Consensus 92 ~---~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~------~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~ 162 (242)
T 2qk2_A 92 F---SNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS------LEAQQESIVESLSNKNPSVKSETALFIARALT 162 (242)
T ss_dssp G---HHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC------HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred H---HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCC------HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 7---98999999999999768988999999999999997289------99999999998848983999999999999998
Q ss_pred -CC--CCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCC-HHHHHHHHHH
Q ss_conf -02--22722289999999996479999999999999999998623-6799539899
Q 002658 236 -VG--AIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSS-NLVIDGATST 288 (896)
Q Consensus 236 -vg--a~~~pyld~lLp~L~e~Lss~DW~vRKaAaEaLgsLA~avg-e~L~Py~~si 288 (896)
.+ ..+.+|++.++|.|..+|.+.+|.+|++|+++|+.|+..+| +.|.+|++.+
T Consensus 163 ~~~~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~~~~~l~~L 219 (242)
T 2qk2_A 163 RTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLLADV 219 (242)
T ss_dssp TCCGGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHHHHGGGGTTS
T ss_pred HCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHC
T ss_conf 718877668999999999998846998589999999999999984999999999852
No 8
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=1.00 E-value=1 Score=157.68 Aligned_cols=252 Identities=13% Similarity=0.136 Sum_probs=156.5
Q ss_pred HHHHHHHHHHHHHHHHCCCCC---------CHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 257999999999997308999---------77899999862229-99906689999999999998210024569999999
Q 002658 55 RDTHQIAIEDLEKTIQTLSQE---------SLPMLLNCLYESSN-DPKPAVKKESVRLLALVCELHSELTSTHVTKIISH 124 (896)
Q Consensus 55 RDT~k~A~~eLD~ia~~L~pd---------~Lp~lLs~L~es~s-s~ks~vRKeAIlLLG~iAegh~d~i~P~LpkIIs~ 124 (896)
...+..|...|..++..++++ ..+.+++.|..... +.++.+|..++.+|+.+++.+++.+.||++.+++.
T Consensus 100 ~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~~~ll~~ 179 (1230)
T 1u6g_C 100 EQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTC 179 (1230)
T ss_dssp SHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 88999999999999996797444441178899999999999875788467999999999999998276778879999999
Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHCCCCCCHH
Q ss_conf 99743599967899999999999999731666687033766699999998239-98699999999999998149999224
Q 002658 125 IVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQ-NKGVQSGAAMCMAKMVECASDPPVVA 203 (896)
Q Consensus 125 IirrLkDpDs~VR~Aa~daIG~La~~li~~~~~~~~~~~~~lLkPLleaL~eq-nk~VQ~gAAsALAkIIE~a~d~~~~y 203 (896)
++..|.|+++.||.+++.+++.++....+ ..++.+++.|++.|... +..+..+++.||..+++..+....+|
T Consensus 180 l~~~L~~~~~~vR~~a~~al~~l~~~~~~-------~~~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~ 252 (1230)
T 1u6g_C 180 LLPQLTSPRLAVRKRTIIALGHLVMSCGN-------IVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEY 252 (1230)
T ss_dssp HGGGGGCSSHHHHHHHHHHHHHHTTTC-----------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTS
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHCCH-------HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99987599689999999999999985689-------99999999999986167755689999999999999868989988
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHC-CCCCCCCHHHHHHHHHHHHCC-------------------------
Q ss_conf 899999999971298446499999999999840-222722289999999996479-------------------------
Q 002658 204 FQKLCARICKLLSNQNFMAKASLLPVVGSLSQV-GAIAPQSLEPLLQSIHECLGS------------------------- 257 (896)
Q Consensus 204 L~~LiPRLlkLLksps~kaK~alLsaIgSLa~v-ga~~~pyld~lLp~L~e~Lss------------------------- 257 (896)
++.++|.++..++..+..+|..++.+++.++.. +..+.+|++.++|.++..+..
T Consensus 253 l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~ 332 (1230)
T 1u6g_C 253 LEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDD 332 (1230)
T ss_dssp CTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC------------------------
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCH
T ss_conf 99999999998668977899999999999999784877776899999999982789988876441101122334465301
Q ss_pred ------------CCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf ------------99999999999999999862367995398999999862119872348999999999
Q 002658 258 ------------TDWATRKAAADALSALALHSSNLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQL 313 (896)
Q Consensus 258 ------------~DW~vRKaAaEaLgsLA~avge~L~Py~~siI~aLE~~RfDKvKpVRDaa~eALel 313 (896)
..|.+|++|+++|..++...++.|.+|+..++..+..+-.|....||..+.+++..
T Consensus 333 ~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~ 400 (1230)
T 1u6g_C 333 QGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLS 400 (1230)
T ss_dssp ------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHH
T ss_pred HHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 10013666455567799999999999999746667999999998999987179865799999999999
No 9
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=1.00 E-value=1 Score=154.54 Aligned_cols=274 Identities=16% Similarity=0.185 Sum_probs=205.2
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 769999999999997079925799999999999730899-97789999986222999-9066899999999999982100
Q 002658 36 LAMVEMKQKILTSLSKLADRDTHQIAIEDLEKTIQTLSQ-ESLPMLLNCLYESSNDP-KPAVKKESVRLLALVCELHSEL 113 (896)
Q Consensus 36 ~~~~~Lk~rll~~L~KLsDRDT~k~A~~eLD~ia~~L~p-d~Lp~lLs~L~es~ss~-ks~vRKeAIlLLG~iAegh~d~ 113 (896)
.....+|..++..|.. .+...++.+...|..++....| ...+.+++.|.+...+. ++.+|..++.+|+.+++.....
T Consensus 91 ~~~~~ik~~ll~~l~~-~~~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~ 169 (861)
T 2bpt_A 91 EAKNQIKTNALTALVS-IEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQ 169 (861)
T ss_dssp HHHHHHHHHHHHHHTC-SSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTT
T ss_pred HHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHH
T ss_conf 9999999999998779-963799999999999998467645549999999998726897899999999999999727843
Q ss_pred ---CHHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf ---2456999999999743599--96789999999999999973166668703376669999999823998699999999
Q 002658 114 ---TSTHVTKIISHIVKRLKDS--DSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMC 188 (896)
Q Consensus 114 ---i~P~LpkIIs~IirrLkDp--Ds~VR~Aa~daIG~La~~li~~~~~~~~~~~~~lLkPLleaL~eqnk~VQ~gAAsA 188 (896)
+.++++.|++.+...|.|+ ++.||.++..+++.+..++... .. ....+..+++.|.+.+.+.++.++..|+.|
T Consensus 170 ~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~-~~-~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~ 247 (861)
T 2bpt_A 170 SQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNN-ME-REGERNYLMQVVCEATQAEDIEVQAAAFGC 247 (861)
T ss_dssp SSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHH-HT-SHHHHHHHHHHHHHHHTCSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH-CC-CHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 5678988999999999841579998789999999999999999987-06-766899999999998659988999999999
Q ss_pred HHHHHHHCCCCCCHHHH-HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC------------------CCCCCCHHHHHH
Q ss_conf 99999814999922489-99999999712984464999999999998402------------------227222899999
Q 002658 189 MAKMVECASDPPVVAFQ-KLCARICKLLSNQNFMAKASLLPVVGSLSQVG------------------AIAPQSLEPLLQ 249 (896)
Q Consensus 189 LAkIIE~a~d~~~~yL~-~LiPRLlkLLksps~kaK~alLsaIgSLa~vg------------------a~~~pyld~lLp 249 (896)
|..+++..++...+|+. .+++-+...+.+.+..++..++.++..++... ....+++..++|
T Consensus 248 l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ 327 (861)
T 2bpt_A 248 LCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVP 327 (861)
T ss_dssp HHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
T ss_conf 99999998899999889999999999873772789999999999999878864333210357732569999999988999
Q ss_pred HHHHHHCC-------CCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf 99996479-------9999999999999999986236799539899999986211987234899999999999840
Q 002658 250 SIHECLGS-------TDWATRKAAADALSALALHSSNLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQLWKKIA 318 (896)
Q Consensus 250 ~L~e~Lss-------~DW~vRKaAaEaLgsLA~avge~L~Py~~siI~aLE~~RfDKvKpVRDaa~eALelWK~I~ 318 (896)
.|+..+.+ ++|.+|++++++|..++...++.+. +.++..+...-.+....+|+++ +..+..+.
T Consensus 328 ~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~~~---~~l~~~l~~~l~~~~~~~r~~a---~~~l~~i~ 397 (861)
T 2bpt_A 328 NLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHIL---EPVLEFVEQNITADNWRNREAA---VMAFGSIM 397 (861)
T ss_dssp HHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGH---HHHHHHHHHHTTCSSHHHHHHH---HHHHHHTS
T ss_pred HHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHH---HHHHHHHHHHCCCCCHHHHHHH---HHHHHHHH
T ss_conf 9999987066530124686899999999999987408689---9999999987579972699999---99999998
No 10
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=1.00 E-value=1 Score=154.20 Aligned_cols=264 Identities=8% Similarity=0.046 Sum_probs=185.5
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCC------CC-H
Q ss_conf 9999999707992579999999999973089997789999986222999906689999999999998210------02-4
Q 002658 43 QKILTSLSKLADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSE------LT-S 115 (896)
Q Consensus 43 ~rll~~L~KLsDRDT~k~A~~eLD~ia~~L~pd~Lp~lLs~L~es~ss~ks~vRKeAIlLLG~iAegh~d------~i-~ 115 (896)
+++.++|...-+.|....|.+.|.++-. .| .+..+|..+... .+....+|..|...|++.+..++. .+ .
T Consensus 5 ~~l~~~L~~~~spd~~~rAe~~L~~~~~--~p-~~~~~L~~il~~-~~~~~~vR~~A~i~lkn~i~~~w~~~~~~~~l~~ 80 (960)
T 1wa5_C 5 ETVAKFLAESVIASTAKTSERNLRQLET--QD-GFGLTLLHVIAS-TNLPLSTRLAGALFFKNFIKRKWVDENGNHLLPA 80 (960)
T ss_dssp HHHHHHHHHTTSGGGHHHHHHHHHHHHT--ST-THHHHHHHHHHC-TTSCHHHHHHHHHHHHHHHHHHSBCSSSCBSSCH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHC--CC-CHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCH
T ss_conf 9999999976599878999999998555--99-889999999865-7988889999999999999854887656788998
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf 56999999999743599967899999999999999731666687033766699999998239986999999999999981
Q 002658 116 THVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVEC 195 (896)
Q Consensus 116 P~LpkIIs~IirrLkDpDs~VR~Aa~daIG~La~~li~~~~~~~~~~~~~lLkPLleaL~eqnk~VQ~gAAsALAkIIE~ 195 (896)
.....|...|+..|.++.+.||...+.+++.++.+-. . ..||.+++-|++.+..++...+.++..+|..+++.
T Consensus 81 ~~k~~ik~~ll~~l~~~~~~ir~~l~~~ia~ia~~d~---p----~~Wp~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~ 153 (960)
T 1wa5_C 81 NNVELIKKEIVPLMISLPNNLQVQIGEAISSIADSDF---P----DRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKR 153 (960)
T ss_dssp HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHS---T----TTCTTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHC---C----CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999980879999999999999998617---1----30157999999984789889999999999999999
Q ss_pred CCCCC---------CHHHHHHHHHHHHHH-------CCCC---HHHH------HHHHHHHHHHHHCC--CCCCCCHHHHH
Q ss_conf 49999---------224899999999971-------2984---4649------99999999998402--22722289999
Q 002658 196 ASDPP---------VVAFQKLCARICKLL-------SNQN---FMAK------ASLLPVVGSLSQVG--AIAPQSLEPLL 248 (896)
Q Consensus 196 a~d~~---------~~yL~~LiPRLlkLL-------ksps---~kaK------~alLsaIgSLa~vg--a~~~pyld~lL 248 (896)
.+... ...+..++|+++.++ +.+. ...+ ..++.++.++.... ..+...+...+
T Consensus 154 ~~~~~~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~~~~~~~ 233 (960)
T 1wa5_C 154 WRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNIQVGM 233 (960)
T ss_dssp GTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 88761484778999999999899999999999999873579879999999999999999999862565599999899999
Q ss_pred HHHHHHHCC-----------C----CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHC-----CCCHHHHHHHH
Q ss_conf 999996479-----------9----999999999999999986236799539899999986211-----98723489999
Q 002658 249 QSIHECLGS-----------T----DWATRKAAADALSALALHSSNLVIDGATSTLTVLEACRF-----DKIKPVRDSMN 308 (896)
Q Consensus 249 p~L~e~Lss-----------~----DW~vRKaAaEaLgsLA~avge~L~Py~~siI~aLE~~Rf-----DKvKpVRDaa~ 308 (896)
+.+..++.. . .|.+||.+|++|..++...++.|.||+..++..+...-. ...+ +++.
T Consensus 234 ~~~~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~---~~~~ 310 (960)
T 1wa5_C 234 GIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYD---ILVS 310 (960)
T ss_dssp HHHHHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTTSH---HHHH
T ss_pred HHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCH---HHHH
T ss_conf 9999997689985557855331327999999999999999999899999999999999999998437776728---9999
Q ss_pred HHHHHHHHHCCC
Q ss_conf 999999984058
Q 002658 309 EALQLWKKIAGK 320 (896)
Q Consensus 309 eALelWK~I~~~ 320 (896)
.+++||+.+...
T Consensus 311 ~al~fl~~~~~~ 322 (960)
T 1wa5_C 311 KSLSFLTAVTRI 322 (960)
T ss_dssp HHHHHHHHHHTS
T ss_pred HHHHHHHHHHCC
T ss_conf 999999999686
Done!