Query 002659
Match_columns 896
No_of_seqs 390 out of 4125
Neff 9.7
Searched_HMMs 29240
Date Tue Mar 26 21:39:30 2013
Command hhsearch -i /local_scratch/syshi/lefta3m2/002659.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H2_63-67//hhsearch_pdb/002659hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 1.0 1 1 401.9 19.1 315 153-490 127-472 (549)
2 3sfz_A APAF-1, apoptotic pepti 1.0 1 1 355.5 26.0 309 155-489 125-452 (1249)
3 1vt4_I APAF-1 related killer D 1.0 1 1 333.4 17.4 287 154-483 128-437 (1221)
4 1z6t_A APAF-1, apoptotic prote 1.0 1 1 304.7 23.4 304 155-487 125-450 (591)
5 4ecn_A Leucine-rich repeat pro 1.0 1 1 209.2 16.9 327 510-870 444-842 (876)
6 3rgz_A Protein brassinosteroid 1.0 1 1 208.2 17.0 91 751-848 631-722 (768)
7 4eco_A Uncharacterized protein 1.0 1 1 205.1 14.9 324 512-871 247-603 (636)
8 2id5_A Lingo-1, leucine rich r 1.0 1 1 204.9 27.1 291 497-848 16-313 (477)
9 3rgz_A Protein brassinosteroid 1.0 1 1 204.3 15.9 127 515-643 395-525 (768)
10 4eco_A Uncharacterized protein 1.0 1 1 203.5 15.1 299 510-847 269-603 (636)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=1.00 E-value=1 Score=401.93 Aligned_cols=315 Identities=15% Similarity=0.127 Sum_probs=255.8
Q ss_pred CCCCCCHHHHHHHHHHHHCCC---CCEEEEEECCCCCHHHHHHHHHHH--HHCCCCCCCCEEEEEEECCCC--CHHHHHH
Q ss_conf 884112578999999996049---970999983898637799999995--301489998749999948832--8999999
Q 002659 153 EPIVVGLQSQLEQVWRCLVEE---PAGIVGLYGMGGVGKTTLLTHINN--KFLQVPNDFDCVIWVVVSKDL--RLENIQE 225 (896)
Q Consensus 153 ~~~~vGr~~~~~~l~~~l~~~---~~~vi~I~G~gGiGKTtLa~~v~~--~~~~~~~~f~~~~wv~v~~~~--~~~~l~~ 225 (896)
.+..|||+.++++|.++|..+ ..++|+|+||||+||||||+++|+ +. ++..+|+.++||++++.. +...++.
T Consensus 127 ~~~~~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~-~~~~~F~~~~wv~vs~~~~~~~~~~~~ 205 (549)
T 2a5y_B 127 QMTCYIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQ-LIGINYDSIVWLKDSGTAPKSTFDLFT 205 (549)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSS-TBTTTBSEEEEEECCCCSTTHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHH-HHHCCCCCEEEEEECCCCCCCHHHHHH
T ss_conf 7760784179999999872515789628999869999889999999984069-874669957999978987879999999
Q ss_pred HHHHHCCCCCC-----CCCCCCHHHHHHHHHHHHCCC-EEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHH
Q ss_conf 99975089975-----445568889999999993996-199999257874342222455899999995899924878887
Q 002659 226 IIGGKIGLMNE-----SWKSKSLQEKSLDIFKILGEK-KFVLLLDDLWQRVDLTKVGVPLPSPQSSASKVVFTTRSEEIC 299 (896)
Q Consensus 226 ~i~~~l~~~~~-----~~~~~~~~~~~~~l~~~l~~k-~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~~IiiTtR~~~v~ 299 (896)
.|+.+++.... .....+...+...+++.++++ |+||||||||+..++ .+ + ...||+||||||+..++
T Consensus 206 ~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~----~--~~~gs~ilvTTR~~~v~ 278 (549)
T 2a5y_B 206 DILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RW----A--QELRLRCLVTTRDVEIS 278 (549)
T ss_dssp HHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HH----H--HHTTCEEEEEESBGGGG
T ss_pred HHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHH-CC----C--CCCCCEEEEECCCHHHH
T ss_conf 99999853755345555331469999999999976898489999799971441-54----3--26998899974977999
Q ss_pred HHHC-CCCCEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 5200-375144157996769999988726765599999379999999995898027999987650899978999999998
Q 002659 300 GLME-AQKKFKVACLSDKDAWELFCHKVGEETLNNHPDIPELAQTVAKECGGMPLALITIGRAMSCKRTPQEWRHAIQVL 378 (896)
Q Consensus 300 ~~~~-~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~~~~l~~~~~~~~w~~~l~~l 378 (896)
..++ ...+|++++|+.++||+||.+.++... ..+.+++++++|+++|+|+||||+++|+.++.+ + |... +.+
T Consensus 279 ~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~--~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~---w~~~-~~l 351 (549)
T 2a5y_B 279 NAASQTCEFIEVTSLEIDECYDFLEAYGMPMP--VGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-T---FEKM-AQL 351 (549)
T ss_dssp GGCCSCEEEEECCCCCHHHHHHHHHHTSCCCC----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-S---HHHH-HHH
T ss_pred HHCCCCCEEEECCCCCHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCC-H---HHHH-HHH
T ss_conf 97088973898999898999999998744899--855689999999999599839999999984434-4---8999-875
Q ss_pred HCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHH-----------HHCCCCCCCCCCHHHHHHHHHHC--CCCCCHH-H
Q ss_conf 21357899995512315876306999611257763-----------21268999631677899999861--8888603-4
Q 002659 379 RTTASEFPGLGNEVYPLLKFSYESLPNDIVRSCLL-----------YCSLYPEDYRISKENLIDCWIGE--SFLNERV-K 444 (896)
Q Consensus 379 ~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl-----------~~~~fp~~~~i~~~~li~~wiae--g~i~~~~-~ 444 (896)
....+... ..++..++.+||+.||+ ++|.||+ |||+||+++.|+ +++|+|+ ||+.... .
T Consensus 352 ~~~l~~~~--~~~i~~~l~~Sy~~L~~-~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~ 424 (549)
T 2a5y_B 352 NNKLESRG--LVGVECITPYSYKSLAM-ALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEE 424 (549)
T ss_dssp HHHHHHHC--SSTTCCCSSSSSSSHHH-HHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------C
T ss_pred HHHHHCCC--HHHHHHHHHCCCCCCCH-HHHHHHHCCCHHHHHHHHHEEEECCCCEEE----EEEEEEECCCEECCCCCC
T ss_conf 78761364--77789897516202267-999997526522336743235608997666----533110135500267789
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCC---CCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 66988799999999870112213---77601146999968886551344
Q 002659 445 FEVQNQGYYILGILVHACLLEEV---GEDEVKMHDVIRDMALWIACDSE 490 (896)
Q Consensus 445 ~~~~~~~~~~~~~L~~~~ll~~~---~~~~~~mHdli~~~a~~~~~~~~ 490 (896)
...++.+. |+++|+++||++.. ...+|+|||+||+||++++.+++
T Consensus 425 ~~~~~~~~-~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 425 QLDDEVAD-RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQT 472 (549)
T ss_dssp CCTHHHHH-HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHH
T ss_pred CCHHHHHH-HHHHHHHCCCEEEECCCCCEEEEECHHHHHHHHHHHHHHH
T ss_conf 99999999-9999987588367147980499967699999999988989
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=1.00 E-value=1 Score=355.46 Aligned_cols=309 Identities=20% Similarity=0.241 Sum_probs=250.5
Q ss_pred CCCCHHHHHHHHHHHHCC--CCCEEEEEECCCCCHHHHHHHHHHHHHCCCCC-CCCEEEEEEECCCC--CHHHHHHHHHH
Q ss_conf 411257899999999604--99709999838986377999999953014899-98749999948832--89999999997
Q 002659 155 IVVGLQSQLEQVWRCLVE--EPAGIVGLYGMGGVGKTTLLTHINNKFLQVPN-DFDCVIWVVVSKDL--RLENIQEIIGG 229 (896)
Q Consensus 155 ~~vGr~~~~~~l~~~l~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-~f~~~~wv~v~~~~--~~~~l~~~i~~ 229 (896)
.||||++++++|.+.|.. ++.++|+|+||||+||||||+++|++...... .++.++|+++++.. .....+..++.
T Consensus 125 ~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 204 (1249)
T 3sfz_A 125 IFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNLCM 204 (1249)
T ss_dssp SCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHHHHHH
T ss_pred EECCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHCCHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 41257999999999986135887779999189888889999986075678862788179999788572679999999999
Q ss_pred HCCCCCC--CCCCCCHHHHHHHHHHHHCCC--EEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHH-HCC
Q ss_conf 5089975--445568889999999993996--19999925787434222245589999999589992487888752-003
Q 002659 230 KIGLMNE--SWKSKSLQEKSLDIFKILGEK--KFVLLLDDLWQRVDLTKVGVPLPSPQSSASKVVFTTRSEEICGL-MEA 304 (896)
Q Consensus 230 ~l~~~~~--~~~~~~~~~~~~~l~~~l~~k--~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~~IiiTtR~~~v~~~-~~~ 304 (896)
.+..... .....+.+.+...++..+.++ |+||||||||+..+|..+ +.+++||||||++.++.. +..
T Consensus 205 ~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~--------~~~~~ilvTtR~~~~~~~~~~~ 276 (1249)
T 3sfz_A 205 RLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF--------DNQCQILLTTRDKSVTDSVMGP 276 (1249)
T ss_dssp HHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT--------CSSCEEEEEESSTTTTTTCCSC
T ss_pred HHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHH--------CCCCEEEEECCCHHHHHHHCCC
T ss_conf 86553033347887778999999999735678789999567997788763--------6897899992778998763488
Q ss_pred CCCEECCC-CCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 75144157-99676999998872676559999937999999999589802799998765089997899999999821357
Q 002659 305 QKKFKVAC-LSDKDAWELFCHKVGEETLNNHPDIPELAQTVAKECGGMPLALITIGRAMSCKRTPQEWRHAIQVLRTTAS 383 (896)
Q Consensus 305 ~~~~~l~~-L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~~~~l~~~~~~~~w~~~l~~l~~~~~ 383 (896)
...+.+.+ |+++++++||.+.++... +..++.+++|+++|+|+||||+++|++|+.+. ..|...++.+....+
T Consensus 277 ~~~~~~~~~l~~~~a~~l~~~~~~~~~----~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~~~l~~l~~~~~ 350 (1249)
T 3sfz_A 277 KHVVPVESGLGREKGLEILSLFVNMKK----EDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRWAYYLRQLQNKQF 350 (1249)
T ss_dssp BCCEECCSSCCHHHHHHHHHHHHTSCS----TTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHHHHHHHHHSCCC
T ss_pred CEEEEECCCCCHHHHHHHHHHHHCCCH----HHCCHHHHHHHHHHCCCHHHHHHHHHHHHCCH--HHHHHHHHHHHHHHH
T ss_conf 437982588887889999998657981----34838899999984997799999999862480--579999999865044
Q ss_pred CCC-----CCCCCHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 899-----995512315876306999611257763212689996316778999998618888603466988799999999
Q 002659 384 EFP-----GLGNEVYPLLKFSYESLPNDIVRSCLLYCSLYPEDYRISKENLIDCWIGESFLNERVKFEVQNQGYYILGIL 458 (896)
Q Consensus 384 ~~~-----~~~~~i~~~l~~sy~~L~~~~~k~cfl~~~~fp~~~~i~~~~li~~wiaeg~i~~~~~~~~~~~~~~~~~~L 458 (896)
..- ...+.+..++.+||+.|++ +.|.||++||+||+++.|+++.++.+|.++ .+.+..++++|
T Consensus 351 ~~~~~~~~~~~~~~~~~l~~s~~~L~~-~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~-----------~~~~~~~l~~L 418 (1249)
T 3sfz_A 351 KRIRKSSSYDYEALDEAMSISVEMLRE-DIKDYYTDLSILQKDVKVPTKVLCVLWDLE-----------TEEVEDILQEF 418 (1249)
T ss_dssp CCSSCTTCTTHHHHHHHHHHHHHTSCT-TTHHHHHHGGGSCTTCCEEHHHHHHHHTCC-----------HHHHHHHHHHH
T ss_pred HHCCCCCCCCHHHHHHHHHHHHHHCCH-HHHHHHHHHCCCCCCCEECHHHHHHHHCCC-----------HHHHHHHHHHH
T ss_conf 303465564467799999989986799-999999972813799751899999885898-----------88999999999
Q ss_pred HHHCCCCCCC---CCCCHHHHHHHHHHHHHHCCC
Q ss_conf 8701122137---760114699996888655134
Q 002659 459 VHACLLEEVG---EDEVKMHDVIRDMALWIACDS 489 (896)
Q Consensus 459 ~~~~ll~~~~---~~~~~mHdli~~~a~~~~~~~ 489 (896)
+++||++... ..+|+||++||+|++..+.++
T Consensus 419 ~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 419 VNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp HHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred HHCCCEEEECCCCCEEEEECHHHHHHHHHHHHHH
T ss_conf 7446338963798118996689999987450678
No 3
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=1.00 E-value=1 Score=333.44 Aligned_cols=287 Identities=16% Similarity=0.233 Sum_probs=230.1
Q ss_pred CCCCCHHHHHHHHHHHHCC-CCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCE-EEEEEECCCCCHHHHHHHHHHHC
Q ss_conf 8411257899999999604-997099998389863779999999530148999874-99999488328999999999750
Q 002659 154 PIVVGLQSQLEQVWRCLVE-EPAGIVGLYGMGGVGKTTLLTHINNKFLQVPNDFDC-VIWVVVSKDLRLENIQEIIGGKI 231 (896)
Q Consensus 154 ~~~vGr~~~~~~l~~~l~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~-~~wv~v~~~~~~~~l~~~i~~~l 231 (896)
+..|||+.++++|.++|.. ++.++|+|+||||+||||||+++|++. ++..+|+. ++|+++++.++...++..+...+
T Consensus 128 k~~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~-rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL 206 (1221)
T 1vt4_I 128 KYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSY-KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL 206 (1221)
T ss_dssp CSCCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHC-HHHHHHSSCEEEEECCCSSSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHH-HHHHHCCCCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 87789289999999997435897189997699966799999999714-98874899389998289999999999999998
Q ss_pred CCCC---C-C-----CCCCCHHHHHHHHHHHH---CCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHH
Q ss_conf 8997---5-4-----45568889999999993---996199999257874342222455899999995899924878887
Q 002659 232 GLMN---E-S-----WKSKSLQEKSLDIFKIL---GEKKFVLLLDDLWQRVDLTKVGVPLPSPQSSASKVVFTTRSEEIC 299 (896)
Q Consensus 232 ~~~~---~-~-----~~~~~~~~~~~~l~~~l---~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~~IiiTtR~~~v~ 299 (896)
+... . . ....+.+.....++..+ .++|+||||||||+...|..+. .||+||||||++.++
T Consensus 207 ~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~--------pGSRILVTTRd~~Va 278 (1221)
T 1vt4_I 207 YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN--------LSCKILLTTRFKQVT 278 (1221)
T ss_dssp HHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH--------SSCCEEEECSCSHHH
T ss_pred HHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHC--------CCEEEEEECCCHHHH
T ss_conf 622721022001346799999999999999998504788799871868189998647--------982999944373799
Q ss_pred HHHCCCCCEECC------CCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCC-CHHHHH
Q ss_conf 520037514415------7996769999988726765599999379999999995898027999987650899-978999
Q 002659 300 GLMEAQKKFKVA------CLSDKDAWELFCHKVGEETLNNHPDIPELAQTVAKECGGMPLALITIGRAMSCKR-TPQEWR 372 (896)
Q Consensus 300 ~~~~~~~~~~l~------~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~~~~l~~~~-~~~~w~ 372 (896)
..+.....+.++ +|+.+|||+||.+..... ..++..++ |+|+||||+++|+.|+.+. +...|.
T Consensus 279 ~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~-------~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~ 348 (1221)
T 1vt4_I 279 DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR-------PQDLPREV---LTTNPRRLSIIAESIRDGLATWDNWK 348 (1221)
T ss_dssp HHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHHCCC-------TTTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHH
T ss_pred HHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCC-------HHHHHHHH---HCCCHHHHHHHHHHHHCCCCCHHHHH
T ss_conf 866897089946865568969999999999974998-------89999999---69899999999999848899799986
Q ss_pred HHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCHH-HHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 999998213578999955123158763069996112-5776321268999631677899999861888860346698879
Q 002659 373 HAIQVLRTTASEFPGLGNEVYPLLKFSYESLPNDIV-RSCLLYCSLYPEDYRISKENLIDCWIGESFLNERVKFEVQNQG 451 (896)
Q Consensus 373 ~~l~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~-k~cfl~~~~fp~~~~i~~~~li~~wiaeg~i~~~~~~~~~~~~ 451 (896)
.. ....+..++.+||+.|++ +. |.||++||+||+++.|+++.++.+|+++| ++.+
T Consensus 349 ~~-------------~~~~I~aaLelSYd~Lp~-eelK~cFL~LAIFPed~~I~~elLa~LW~aeG----------eedA 404 (1221)
T 1vt4_I 349 HV-------------NCDKLTTIIESSLNVLEP-AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI----------KSDV 404 (1221)
T ss_dssp HC-------------SCHHHHHHHHHHHHHSCT-THHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC----------SHHH
T ss_pred CC-------------CHHHHHHHHHHHHHHCCH-HHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCC----------HHHH
T ss_conf 69-------------861899999999984889-99999999971779999877999998766778----------8999
Q ss_pred HHHHHHHHHHCCCCCC-CCCCCHHHHHHHHHHH
Q ss_conf 9999999870112213-7760114699996888
Q 002659 452 YYILGILVHACLLEEV-GEDEVKMHDVIRDMAL 483 (896)
Q Consensus 452 ~~~~~~L~~~~ll~~~-~~~~~~mHdli~~~a~ 483 (896)
..++++|+++||++.. +...|+|||++++++.
T Consensus 405 e~~L~eLvdRSLLq~d~~~~rYrMHDLllELr~ 437 (1221)
T 1vt4_I 405 MVVVNKLHKYSLVEKQPKESTISIPSIYLELKV 437 (1221)
T ss_dssp HHHHHHHHTSSSSSBCSSSSEEBCCCHHHHHHH
T ss_pred HHHHHHHHHHCCEEEECCCCEEEEHHHHHHHHC
T ss_conf 999999996198898689998986099999856
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=1.00 E-value=1 Score=304.72 Aligned_cols=304 Identities=21% Similarity=0.293 Sum_probs=233.9
Q ss_pred CCCCHHHHHHHHHHHHCC--CCCEEEEEECCCCCHHHHHHHHHHHHHCCC-CCCC-CEEEEEEECCCCCHHHHHHH---H
Q ss_conf 411257899999999604--997099998389863779999999530148-9998-74999994883289999999---9
Q 002659 155 IVVGLQSQLEQVWRCLVE--EPAGIVGLYGMGGVGKTTLLTHINNKFLQV-PNDF-DCVIWVVVSKDLRLENIQEI---I 227 (896)
Q Consensus 155 ~~vGr~~~~~~l~~~l~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~~f-~~~~wv~v~~~~~~~~l~~~---i 227 (896)
.||||+.+++.|.+++.. ++.++|+|+||||+||||||.+++++. +. ...| +.++|++++.. +...+... +
T Consensus 125 ~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~-~~~~~~f~~~v~wv~~~~~-~~~~~~~~l~~l 202 (591)
T 1z6t_A 125 VFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDH-SLLEGCFPGGVHWVSVGKQ-DKSGLLMKLQNL 202 (591)
T ss_dssp SCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCH-HHHHHHCTTCEEEEEEESC-CHHHHHHHHHHH
T ss_pred EECCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHCH-HHHHHHCCCCEEEEECCCC-CHHHHHHHHHHH
T ss_conf 14052999999999986036888469997699898899999998355-6888528996599977877-668899999999
Q ss_pred HHHCCCC--CCCCCCCCHHHHHHHHHHHHCC--CEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHC
Q ss_conf 9750899--7544556888999999999399--61999992578743422224558999999958999248788875200
Q 002659 228 GGKIGLM--NESWKSKSLQEKSLDIFKILGE--KKFVLLLDDLWQRVDLTKVGVPLPSPQSSASKVVFTTRSEEICGLME 303 (896)
Q Consensus 228 ~~~l~~~--~~~~~~~~~~~~~~~l~~~l~~--k~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~~IiiTtR~~~v~~~~~ 303 (896)
+..++.. .......+.+.....+...+.+ +++||||||+|+...+..+ ..+++||||||+..++..+.
T Consensus 203 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l--------~~~~~ilvTsR~~~~~~~~~ 274 (591)
T 1z6t_A 203 CTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF--------DSQCQILLTTRDKSVTDSVM 274 (591)
T ss_dssp HHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT--------CSSCEEEEEESCGGGGTTCC
T ss_pred HHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHH--------CCCCEEEEECCCCHHHHHCC
T ss_conf 9985035565567998899999999999706799869998589987999876--------37986999898817777348
Q ss_pred CCCCEEC---CCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHC
Q ss_conf 3751441---5799676999998872676559999937999999999589802799998765089997899999999821
Q 002659 304 AQKKFKV---ACLSDKDAWELFCHKVGEETLNNHPDIPELAQTVAKECGGMPLALITIGRAMSCKRTPQEWRHAIQVLRT 380 (896)
Q Consensus 304 ~~~~~~l---~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~~~~l~~~~~~~~w~~~l~~l~~ 380 (896)
...+++ ++|+.+++++||.+.++... ....+.+.+|+++|+|+|+||+.+|+.++.. ...|...++.+..
T Consensus 275 -~~~~~v~~l~~L~~~ea~~L~~~~~~~~~----~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~--~~~w~~~l~~l~~ 347 (591)
T 1z6t_A 275 -GPKYVVPVESSLGKEKGLEILSLFVNMKK----ADLPEQAHSIIKECKGSPLVVSLIGALLRDF--PNRWEYYLKQLQN 347 (591)
T ss_dssp -SCEEEEECCSSCCHHHHHHHHHHHHTSCG----GGSCTHHHHHHHHHTTCHHHHHHHHHHHHHS--TTCHHHHHHHHHS
T ss_pred -CCCEEEECCCCCCHHHHHHHHHHHHCCCC----CCCCHHHHHHHHHHCCCCHHHHHHHHHHHCC--CHHHHHHHHHHHH
T ss_conf -98268615889998999999998718983----1045999999999589837999999998448--4359999999988
Q ss_pred CCCCC-----CCCCCCHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
Q ss_conf 35789-----9995512315876306999611257763212689996316778999998618888603466988799999
Q 002659 381 TASEF-----PGLGNEVYPLLKFSYESLPNDIVRSCLLYCSLYPEDYRISKENLIDCWIGESFLNERVKFEVQNQGYYIL 455 (896)
Q Consensus 381 ~~~~~-----~~~~~~i~~~l~~sy~~L~~~~~k~cfl~~~~fp~~~~i~~~~li~~wiaeg~i~~~~~~~~~~~~~~~~ 455 (896)
..... ......+..++..||+.|++ ..|.||++||+||+++.|+.+.++.+|.++ .+.+..++
T Consensus 348 ~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~-~~~~~l~~la~f~~~~~i~~~~l~~l~~~~-----------~~~~~~~l 415 (591)
T 1z6t_A 348 KQFKRIRKSSSYDYEALDEAMSISVEMLRE-DIKDYYTDLSILQKDVKVPTKVLCILWDME-----------TEEVEDIL 415 (591)
T ss_dssp CCCCCSSCCCSSCCHHHHHHHHHHHHTSCT-TTHHHHHHGGGCCTTCCEEHHHHHHHHTCC-----------HHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHCCH-HHHHHHHHCCCCCCCCCCCHHHHHHHHCCC-----------HHHHHHHH
T ss_conf 689876511465437899999999986899-999999974556799850899999996658-----------89999999
Q ss_pred HHHHHHCCCCCC---CCCCCHHHHHHHHHHHHHHC
Q ss_conf 999870112213---77601146999968886551
Q 002659 456 GILVHACLLEEV---GEDEVKMHDVIRDMALWIAC 487 (896)
Q Consensus 456 ~~L~~~~ll~~~---~~~~~~mHdli~~~a~~~~~ 487 (896)
..|+++||++.. ....|+||+++|++++....
T Consensus 416 ~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~~ 450 (591)
T 1z6t_A 416 QEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKNC 450 (591)
T ss_dssp HHHHHTTSSEEEEETTEEEEECCHHHHHHHHHHTG
T ss_pred HHHHHCCCEEEECCCCCCEEEECHHHHHHHHHHHH
T ss_conf 99985958688548985679976899999986535
No 5
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=1.00 E-value=1 Score=209.23 Aligned_cols=327 Identities=12% Similarity=0.134 Sum_probs=206.1
Q ss_pred CCCCCCCEEEEEECCCCCC------------------CCC-CC--CCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECC
Q ss_conf 8786660289801254233------------------456-77--89984378545665544450554069977489744
Q 002659 510 VRGWENVSRLSLMQNRIKN------------------LSE-IP--KCPHLLTLFLNSNELKIITNDFFQFMPSLKVLSLS 568 (896)
Q Consensus 510 ~~~~~~~~~l~l~~~~~~~------------------l~~-~~--~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~ 568 (896)
+..+++++.|.+++|.+.. +|. +. .+++|++|++++|.+....+..+..+++|++|+++
T Consensus 444 l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls 523 (876)
T 4ecn_A 444 IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIA 523 (876)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECT
T ss_pred HHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECC
T ss_conf 75699987897968867887465322332222224458744402559997789871898875273877379998999896
Q ss_pred CCCCCC--CCCCCCCCCC-------CCCEEECCCCCCCCCCH--HHHCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEE
Q ss_conf 775521--1321114878-------88777424777444542--321288788762366544457748898125566499
Q 002659 569 RNRRLT--NLQLGISKLV-------SLQHLDLSLTNIEKLSG--ELKALVNLKCLNLEYTWSLVTIPQQLIASFLRLHVL 637 (896)
Q Consensus 569 ~~~~l~--~lp~~i~~l~-------~L~~L~l~~~~i~~lp~--~~~~L~~L~~L~l~~~~~l~~ip~~~i~~l~~L~~L 637 (896)
+|..+. .+|..++++. +|++|++++|.+..+|. .++++++|+.|++++| .+..+| . ++.+++|+.|
T Consensus 524 ~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N-~l~~lp-~-~~~L~~L~~L 600 (876)
T 4ecn_A 524 CNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHN-KVRHLE-A-FGTNVKLTDL 600 (876)
T ss_dssp TCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTS-CCCBCC-C-CCTTSEESEE
T ss_pred CCCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCHHHHHCCCCCCEEECCCC-CCCCCH-H-HCCCCCCEEE
T ss_conf 898765664617787523301556883199822894776187235515898898989799-825621-2-2479850079
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCC-CCEEEEEECCCHHHHHHHCC------------------------
Q ss_conf 83033798643134654334671230898439999-85899995590446654101------------------------
Q 002659 638 RMFGVGDDAFEVASEDSVLFDGGEFLVEELLGLNH-LEVLSLTLRSPYALQSFLTS------------------------ 692 (896)
Q Consensus 638 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~-L~~L~l~~~~~~~~~~~~~~------------------------ 692 (896)
++.++.... .+..+..+++ |+.|.++.+....++..+..
T Consensus 601 ~Ls~N~l~~----------------lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~ 664 (876)
T 4ecn_A 601 KLDYNQIEE----------------IPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNIS 664 (876)
T ss_dssp ECCSSCCSC----------------CCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCS
T ss_pred ECCCCCCCC----------------CHHHHHHCCCCCCEEECCCCCCCCCCHHHHCCCCCCCCEEECCCCCCCCCCCCCH
T ss_conf 871871250----------------3587752511498999849978747644522556777889770884788643200
Q ss_pred --CC--CCCCCEEEEEEECCCCCEEEECCCCCCCCCCEEEECCCCCCCEEEECCCCCCC--CCCCCCCCEEEECCCCCCC
Q ss_conf --44--23552012661027998023605445678676865368887257716777544--4257775489823478888
Q 002659 693 --HK--LQCCTQALFLQYFKDSTSLVVSSLANLKRLNVLRIADCEKLEELKIDYTGEIQ--HFGFRSLCKVEIARCQKLK 766 (896)
Q Consensus 693 --~~--~~~~l~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~l~~~~~~~~~--~~~~~~L~~L~L~~c~~l~ 766 (896)
.. ...+++.|.+..+... .++...+..+++|+.|++.+| .+..++........ ...+++|+.|+|++| .+.
T Consensus 665 ~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N-~L~ 741 (876)
T 4ecn_A 665 CSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNN-LMTSIPENSLKPKDGNYKNTYLLTTIDLRFN-KLT 741 (876)
T ss_dssp SCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSC-CCSCCCTTSSSCTTSCCTTGGGCCEEECCSS-CCC
T ss_pred HHHCCCCCCCCCEEECCCCCCC-CCCHHHHCCCCCCCEEECCCC-CCCCCCHHHHCCCCCCCCCCCCCCEEECCCC-CCC
T ss_conf 0000135797688983199688-659788713898899989899-6885496784555334321487158988899-786
Q ss_pred CCCC-CC--CCCCCCEEEEECCCCCCHHCCCCCCCCCCCCCCCCCCEEECCC------CCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 9952-23--7999877958237321000136754477877676535862167------7756612779878998347967
Q 002659 767 DLTF-LV--FAPNLESIEVKSCLALEEIVSDVPEAMGNLNLFAKLQYLELLG------LPNLKSIYWKPLSFPRLKEMTI 837 (896)
Q Consensus 767 ~l~~-l~--~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~------~~~l~~i~~~~~~~~~L~~L~i 837 (896)
.+|. +. .+++|+.|++++| .+..++ ..+..+++|+.|++++ +.....++.....+++|+.|.+
T Consensus 742 ~lp~~l~~~~l~~L~~L~Ls~N-~L~~lp-------~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~L 813 (876)
T 4ecn_A 742 SLSDDFRATTLPYLSNMDVSYN-CFSSFP-------TQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQI 813 (876)
T ss_dssp CCCGGGSTTTCTTCCEEECCSS-CCSSCC-------CGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEEC
T ss_pred CCHHHHHHCCCCCCCEEEECCC-CCCCCC-------HHHHCCCCCCEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEEC
T ss_conf 6527762442798698990899-787610-------56615999889988799776656324448688836998788988
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEEECHHHHHHHC
Q ss_conf 477577888899977666535997017654313
Q 002659 838 ITCNKLKKLPVDSNSAKECKIVIRGDREWWRQL 870 (896)
Q Consensus 838 ~~C~~L~~Lp~~~~~~~~~l~~~~~~~~~~~~l 870 (896)
.+| .+..+|....+ .|..++...+.+..+
T Consensus 814 s~N-~L~~Ip~~l~~---~L~~LdLs~N~l~~i 842 (876)
T 4ecn_A 814 GSN-DIRKVDEKLTP---QLYILDIADNPNISI 842 (876)
T ss_dssp CSS-CCCBCCSCCCS---SSCEEECCSCTTCEE
T ss_pred CCC-CCCCCCHHHCC---CCCEEECCCCCCCCC
T ss_conf 799-78740876628---778899979988811
No 6
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=208.18 Aligned_cols=91 Identities=12% Similarity=0.036 Sum_probs=39.5
Q ss_pred CCCCCEEEECCCCCCCCCC-CCCCCCCCCEEEEECCCCCCHHCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCC
Q ss_conf 7775489823478888995-223799987795823732100013675447787767653586216777566127798789
Q 002659 751 FRSLCKVEIARCQKLKDLT-FLVFAPNLESIEVKSCLALEEIVSDVPEAMGNLNLFAKLQYLELLGLPNLKSIYWKPLSF 829 (896)
Q Consensus 751 ~~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~ 829 (896)
+++|+.|++++|.....+| .++.+++|+.|++++| .+...++ ..++.+++|+.|+++++.--..+|.....+
T Consensus 631 l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N-~l~g~ip------~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l 703 (768)
T 3rgz_A 631 NGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHN-DISGSIP------DEVGDLRGLNILDLSSNKLDGRIPQAMSAL 703 (768)
T ss_dssp SBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSS-CCCSCCC------GGGGGCTTCCEEECCSSCCEECCCGGGGGC
T ss_pred CCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCC-CCCCCCC------HHHHCCCCCCEEECCCCCCCCCCCHHHHCC
T ss_conf 356657978588015558778841415787848688-0388789------678477789989897880238688677578
Q ss_pred CCCCEEEECCCCCCCCCCC
Q ss_conf 9834796747757788889
Q 002659 830 PRLKEMTIITCNKLKKLPV 848 (896)
Q Consensus 830 ~~L~~L~i~~C~~L~~Lp~ 848 (896)
++|+.|.+++|+--..+|.
T Consensus 704 ~~L~~L~ls~N~l~g~iP~ 722 (768)
T 3rgz_A 704 TMLTEIDLSNNNLSGPIPE 722 (768)
T ss_dssp CCCSEEECCSSEEEEECCS
T ss_pred CCCCEEECCCCCCCCCCCC
T ss_conf 8789787968815560899
No 7
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=1.00 E-value=1 Score=205.15 Aligned_cols=324 Identities=13% Similarity=0.141 Sum_probs=186.9
Q ss_pred CCCCCEEEEEECCCCCC-CC-CCCCCCCCCEEECCCCC-CCC--CCHHHHCCC------CCCCEEECCCCCCCCCCCC--
Q ss_conf 86660289801254233-45-67789984378545665-544--450554069------9774897447755211321--
Q 002659 512 GWENVSRLSLMQNRIKN-LS-EIPKCPHLLTLFLNSNE-LKI--ITNDFFQFM------PSLKVLSLSRNRRLTNLQL-- 578 (896)
Q Consensus 512 ~~~~~~~l~l~~~~~~~-l~-~~~~~~~L~~L~l~~~~-l~~--~~~~~~~~l------~~L~~L~L~~~~~l~~lp~-- 578 (896)
.+++++.|.+.+|.+.. +| .+..+++|++|++++|. +.. +|.. +..+ ++|++|++++| .+..+|.
T Consensus 247 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~-~~~L~~~~~l~~L~~L~L~~n-~l~~ip~~~ 324 (636)
T 4eco_A 247 NLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDD-WQALADAPVGEKIQIIYIGYN-NLKTFPVET 324 (636)
T ss_dssp GCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHH-HHHHHHSGGGGTCCEEECCSS-CCSSCCCHH
T ss_pred CCCCCCEEEECCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCHHH-HHHHHCCCCCCCCCEEECCCC-CCCCCCCHH
T ss_conf 468788898048857762838883499978897847988766533578-875430465788888989799-377667655
Q ss_pred CCCCCCCCCEEECCCCCCC-CCCHHHHCCCCCCEEECCCCCCCCCCCHHHHHCCCC-CCEEEEECCCCCCCCCCCCCCCC
Q ss_conf 1148788877742477744-454232128878876236654445774889812556-64998303379864313465433
Q 002659 579 GISKLVSLQHLDLSLTNIE-KLSGELKALVNLKCLNLEYTWSLVTIPQQLIASFLR-LHVLRMFGVGDDAFEVASEDSVL 656 (896)
Q Consensus 579 ~i~~l~~L~~L~l~~~~i~-~lp~~~~~L~~L~~L~l~~~~~l~~ip~~~i~~l~~-L~~L~l~~~~~~~~~~~~~~~~~ 656 (896)
.++++++|++|++++|.+. .+| .+.++++|+.|++++| .+..+|.. +..+++ |++|++.++....
T Consensus 325 ~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N-~l~~lp~~-l~~l~~~L~~L~Ls~N~l~~---------- 391 (636)
T 4eco_A 325 SLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYN-QITEIPAN-FCGFTEQVENLSFAHNKLKY---------- 391 (636)
T ss_dssp HHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSS-EEEECCTT-SEEECTTCCEEECCSSCCSS----------
T ss_pred HHCCCCCCCEEECCCCCCCCCHH-HHCCCCCCCEEECCCC-CCCCCCHH-HHHHCCCCCEEECCCCCCCC----------
T ss_conf 54257888989690880705166-6478898898989899-40303375-65102368689852982754----------
Q ss_pred CCCCCCCHHHHCCC--CCCCEEEEEECCCHHHH-HHHC----CCCCCCCCEEEEEEECCCCCEEEECCCCCCCCCCEEEE
Q ss_conf 46712308984399--99858999955904466-5410----14423552012661027998023605445678676865
Q 002659 657 FDGGEFLVEELLGL--NHLEVLSLTLRSPYALQ-SFLT----SHKLQCCTQALFLQYFKDSTSLVVSSLANLKRLNVLRI 729 (896)
Q Consensus 657 ~~~~~~~~~~L~~l--~~L~~L~l~~~~~~~~~-~~~~----~~~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L 729 (896)
.+..+..+ ++|+.|.++.+...... ..+. ......+++.|.+..+... .++...+..+++|+.|++
T Consensus 392 ------lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~L 464 (636)
T 4eco_A 392 ------IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINL 464 (636)
T ss_dssp ------CCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEEC
T ss_pred ------CCHHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCCCCCCCCEEECCCCCCC-CCCHHHHCCCCCCCEEEC
T ss_conf ------4665533345766889774885788652442002201125898888977279668-678788715898898989
Q ss_pred CCCCCCCEEEECCCCCCC--CCCCCCCCEEEECCCCCCCCCCC-CC--CCCCCCEEEEECCCCCCHHCCCCCCCCCCCCC
Q ss_conf 368887257716777544--42577754898234788889952-23--79998779582373210001367544778776
Q 002659 730 ADCEKLEELKIDYTGEIQ--HFGFRSLCKVEIARCQKLKDLTF-LV--FAPNLESIEVKSCLALEEIVSDVPEAMGNLNL 804 (896)
Q Consensus 730 ~~~~~l~~l~~~~~~~~~--~~~~~~L~~L~L~~c~~l~~l~~-l~--~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~ 804 (896)
.+|. ++.++........ ...+++|+.|++++| .+..+|. +. .+++|+.|++++ +.+..++ ..+..
T Consensus 465 s~N~-l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~~~l~~L~~L~Ls~-N~l~~ip-------~~~~~ 534 (636)
T 4eco_A 465 MGNM-LTEIPKNSLKDENENFKNTYLLTSIDLRFN-KLTKLSDDFRATTLPYLVGIDLSY-NSFSKFP-------TQPLN 534 (636)
T ss_dssp CSSC-CSBCCSSSSEETTEECTTGGGCCEEECCSS-CCCBCCGGGSTTTCTTCCEEECCS-SCCSSCC-------CGGGG
T ss_pred CCCC-CCCCCHHHHCCCCCCCCCCCCCCEEECCCC-CCCCCCHHHHHCCCCCCCEEECCC-CCCCCCC-------HHHHC
T ss_conf 7997-887397884044001221477338989699-388168545344588769898989-9887768-------23530
Q ss_pred CCCCCEEECCC------CCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEECHHHHHHHCC
Q ss_conf 76535862167------77566127798789983479674775778888999776665359970176543132
Q 002659 805 FAKLQYLELLG------LPNLKSIYWKPLSFPRLKEMTIITCNKLKKLPVDSNSAKECKIVIRGDREWWRQLQ 871 (896)
Q Consensus 805 ~~~L~~L~l~~------~~~l~~i~~~~~~~~~L~~L~i~~C~~L~~Lp~~~~~~~~~l~~~~~~~~~~~~l~ 871 (896)
+++|+.|++++ +.....++.....+++|+.|.+.+| .++.+|.... +.+..++...+.+..+.
T Consensus 535 l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~ip~~~~---~~L~~L~Ls~N~l~~~~ 603 (636)
T 4eco_A 535 SSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSN-DIRKVNEKIT---PNISVLDIKDNPNISID 603 (636)
T ss_dssp CSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS-CCCBCCSCCC---TTCCEEECCSCTTCEEE
T ss_pred CCCCCEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEECCCC-CCCCCCHHHH---CCCCEEECCCCCCCCCC
T ss_conf 888787889888665667312127377856998788989899-4770597683---86789987699876336
No 8
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=1.00 E-value=1 Score=204.90 Aligned_cols=291 Identities=25% Similarity=0.304 Sum_probs=162.6
Q ss_pred EEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCC--CCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCC
Q ss_conf 9985998755999878666028980125423345--67789984378545665544450554069977489744775521
Q 002659 497 LVCAGAGLTEDPGVRGWENVSRLSLMQNRIKNLS--EIPKCPHLLTLFLNSNELKIITNDFFQFMPSLKVLSLSRNRRLT 574 (896)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~l~ 574 (896)
+...+..+..+|... ..+++.|++++|.+..++ .+..+++|++|++++|.+..+++..|..+++|++|++++| .+.
T Consensus 16 v~c~~~~l~~ip~~~-~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~ 93 (477)
T 2id5_A 16 VLCHRKRFVAVPEGI-PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN-RLK 93 (477)
T ss_dssp EECCSCCCSSCCSCC-CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCC
T ss_pred EEECCCCCCCCCCCC-CCCCCEEECCCCCCCEECHHHCCCCCCCCEEECCCCCCCEECHHHHHCCCCCCEEECCCC-CCC
T ss_conf 983899867378778-999838978799364579767158987899889999437708503208736899889999-687
Q ss_pred CCCCC-CCCCCCCCEEECCCCCCCCC-CHHHHCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEEEECCCCCCCCCCCC
Q ss_conf 13211-14878887774247774445-42321288788762366544457748898125566499830337986431346
Q 002659 575 NLQLG-ISKLVSLQHLDLSLTNIEKL-SGELKALVNLKCLNLEYTWSLVTIPQQLIASFLRLHVLRMFGVGDDAFEVASE 652 (896)
Q Consensus 575 ~lp~~-i~~l~~L~~L~l~~~~i~~l-p~~~~~L~~L~~L~l~~~~~l~~ip~~~i~~l~~L~~L~l~~~~~~~~~~~~~ 652 (896)
.+|.. +..+++|++|++++|.+..+ |..+.++++|+.|++++| .+..++...+..+++|++|++.++...
T Consensus 94 ~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~------- 165 (477)
T 2id5_A 94 LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDN-DLVYISHRAFSGLNSLEQLTLEKCNLT------- 165 (477)
T ss_dssp SCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCT-TCCEECTTSSTTCTTCCEEEEESCCCS-------
T ss_pred CCCCCCCCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCEEECCCC-CCCEECHHHCCCCCCCCEEECCCCCCC-------
T ss_conf 438320258777797889999566379657166435998989999-555108400358899998979899586-------
Q ss_pred CCCCCCCCCCCHHHHCCCCCCCEEEEEECCCHHHHHHHCCCCCCCCCEEEEEEECCCCCEEEECCCCCCCCCCEEEECCC
Q ss_conf 54334671230898439999858999955904466541014423552012661027998023605445678676865368
Q 002659 653 DSVLFDGGEFLVEELLGLNHLEVLSLTLRSPYALQSFLTSHKLQCCTQALFLQYFKDSTSLVVSSLANLKRLNVLRIADC 732 (896)
Q Consensus 653 ~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~ 732 (896)
......+..+++|+.|.+..+....... ..+..+++|+.|++.+|
T Consensus 166 --------~~~~~~l~~l~~L~~L~l~~n~i~~~~~---------------------------~~~~~l~~L~~L~l~~~ 210 (477)
T 2id5_A 166 --------SIPTEALSHLHGLIVLRLRHLNINAIRD---------------------------YSFKRLYRLKVLEISHW 210 (477)
T ss_dssp --------SCCHHHHTTCTTCCEEEEESCCCCEECT---------------------------TCSCSCTTCCEEEEECC
T ss_pred --------CCCHHHHCCCCCCCEEECCCCCCCEECH---------------------------HHCCCCCCCCEEECCCC
T ss_conf --------1474572226777688699995757386---------------------------44046755661358888
Q ss_pred CCCCEEEECCCCCCCCCCCCCCCEEEECCCCCCCCCC--CCCCCCCCCEEEEECCCCCCHHCCCCCCCCCCCCCCCCCCE
Q ss_conf 8872577167775444257775489823478888995--22379998779582373210001367544778776765358
Q 002659 733 EKLEELKIDYTGEIQHFGFRSLCKVEIARCQKLKDLT--FLVFAPNLESIEVKSCLALEEIVSDVPEAMGNLNLFAKLQY 810 (896)
Q Consensus 733 ~~l~~l~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~--~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~L~~ 810 (896)
..+..++..... ..+|+.|++++| .++.++ .+..+++|+.|++++| .+..++. ..+..+++|+.
T Consensus 211 ~~~~~~~~~~~~------~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~------~~~~~l~~L~~ 276 (477)
T 2id5_A 211 PYLDTMTPNCLY------GLNLTSLSITHC-NLTAVPYLAVRHLVYLRFLNLSYN-PISTIEG------SMLHELLRLQE 276 (477)
T ss_dssp TTCCEECTTTTT------TCCCSEEEEESS-CCCSCCHHHHTTCTTCCEEECCSS-CCCEECT------TSCTTCTTCCE
T ss_pred CCCCCCCCCCCC------CCCCCEEECCCC-CCCCCCHHHHCCCCCCCEEECCCC-CCCCCCH------HHCCCCCCCCE
T ss_conf 665556833246------763257978699-335549778427130686289999-3784682------13415525797
Q ss_pred EECCCCCCCCCC-CCCCCCCCCCCEEEECCCCCCCCCCC
Q ss_conf 621677756612-77987899834796747757788889
Q 002659 811 LELLGLPNLKSI-YWKPLSFPRLKEMTIITCNKLKKLPV 848 (896)
Q Consensus 811 L~l~~~~~l~~i-~~~~~~~~~L~~L~i~~C~~L~~Lp~ 848 (896)
|+++++. +..+ +.....+++|+.|.+.+| +++.+|.
T Consensus 277 L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~ 313 (477)
T 2id5_A 277 IQLVGGQ-LAVVEPYAFRGLNYLRVLNVSGN-QLTTLEE 313 (477)
T ss_dssp EECCSSC-CSEECTTTBTTCTTCCEEECCSS-CCSCCCG
T ss_pred EECCCCC-CCEECHHHHCCCCCCCEEECCCC-CCCEECH
T ss_conf 7898982-65589888447635898989999-5764398
No 9
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=204.27 Aligned_cols=127 Identities=20% Similarity=0.300 Sum_probs=48.4
Q ss_pred CCEEEEEECCCCCC-CC-CCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCC-CCCCCCCCCCCCCEEEC
Q ss_conf 60289801254233-45-67789984378545665544450554069977489744775521-13211148788877742
Q 002659 515 NVSRLSLMQNRIKN-LS-EIPKCPHLLTLFLNSNELKIITNDFFQFMPSLKVLSLSRNRRLT-NLQLGISKLVSLQHLDL 591 (896)
Q Consensus 515 ~~~~l~l~~~~~~~-l~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~l~-~lp~~i~~l~~L~~L~l 591 (896)
+++.+.+.+|.+.. ++ .+..+++|++|++++|.+....+..+..+++|++|++++| .+. .+|..+..+++|++|++
T Consensus 395 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n-~l~~~~p~~~~~l~~L~~L~L 473 (768)
T 3rgz_A 395 TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLN-MLEGEIPQELMYVKTLETLIL 473 (768)
T ss_dssp CCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSS-CCCSCCCGGGGGCTTCCEEEC
T ss_pred CCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCC-CCCCCCCHHHCCCCCCEEEEE
T ss_conf 7618989778465424877756898798989588466854677744998898989788-154718978828777329990
Q ss_pred CCCCCC-CCCHHHHCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEEEECCC
Q ss_conf 477744-4542321288788762366544457748898125566499830337
Q 002659 592 SLTNIE-KLSGELKALVNLKCLNLEYTWSLVTIPQQLIASFLRLHVLRMFGVG 643 (896)
Q Consensus 592 ~~~~i~-~lp~~~~~L~~L~~L~l~~~~~l~~ip~~~i~~l~~L~~L~l~~~~ 643 (896)
++|.+. .+|..+.++++|+.|++++|.....+|.. ++.+++|+.|++.+|.
T Consensus 474 ~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~-~~~l~~L~~L~L~~N~ 525 (768)
T 3rgz_A 474 DFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKW-IGRLENLAILKLSNNS 525 (768)
T ss_dssp CSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGG-GGGCTTCCEEECCSSC
T ss_pred CCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHH-HHCCCCCCEEECCCCC
T ss_conf 199513758878816998998975399518968768-8568999989897894
No 10
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=1.00 E-value=1 Score=203.51 Aligned_cols=299 Identities=15% Similarity=0.153 Sum_probs=138.4
Q ss_pred CCCCCCCEEEEEECCC-CCC--CCC-CC------CCCCCCEEECCCCCCCCCCH-HHHCCCCCCCEEECCCCCCCC-CCC
Q ss_conf 8786660289801254-233--456-77------89984378545665544450-554069977489744775521-132
Q 002659 510 VRGWENVSRLSLMQNR-IKN--LSE-IP------KCPHLLTLFLNSNELKIITN-DFFQFMPSLKVLSLSRNRRLT-NLQ 577 (896)
Q Consensus 510 ~~~~~~~~~l~l~~~~-~~~--l~~-~~------~~~~L~~L~l~~~~l~~~~~-~~~~~l~~L~~L~L~~~~~l~-~lp 577 (896)
+..+++++.|.+++|. +.. +|. +. .+++|++|++++|.+..+|. +.+..+++|++|++++| .+. .+|
T Consensus 269 l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N-~l~g~ip 347 (636)
T 4eco_A 269 LKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYN-QLEGKLP 347 (636)
T ss_dssp TTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSC-CCEEECC
T ss_pred HHCCCCCCEEECCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCEEECCCC-CCCCCHH
T ss_conf 834999788978479887665335788754304657888889897993776676555425788898969088-0705166
Q ss_pred CCCCCCCCCCEEECCCCCCCCCCHHHHCCCC-CCEEECCCCCCCCCCCHHHHHCCC--CCCEEEEECCCCCCCCCCCCCC
Q ss_conf 1114878887774247774445423212887-887623665444577488981255--6649983033798643134654
Q 002659 578 LGISKLVSLQHLDLSLTNIEKLSGELKALVN-LKCLNLEYTWSLVTIPQQLIASFL--RLHVLRMFGVGDDAFEVASEDS 654 (896)
Q Consensus 578 ~~i~~l~~L~~L~l~~~~i~~lp~~~~~L~~-L~~L~l~~~~~l~~ip~~~i~~l~--~L~~L~l~~~~~~~~~~~~~~~ 654 (896)
.++.+++|++|++++|.+..+|..+.++++ |++|++++| .+..+|.. +..++ +|+.|++.++....
T Consensus 348 -~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N-~l~~lp~~-~~~~~l~~L~~L~Ls~N~l~~-------- 416 (636)
T 4eco_A 348 -AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHN-KLKYIPNI-FDAKSVSVMSAIDFSYNEIGS-------- 416 (636)
T ss_dssp -CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSS-CCSSCCSC-CCTTCSSCEEEEECCSSCTTT--------
T ss_pred -HHCCCCCCCEEECCCCCCCCCCHHHHHHCCCCCEEECCCC-CCCCCCHH-HHHCCCCCCCEEECCCCCCCC--------
T ss_conf -6478898898989899403033756510236868985298-27544665-533345766889774885788--------
Q ss_pred CCCCCCCCCHHHHC-------CCCCCCEEEEEECCCHHHHHHHCCCCCCCCCEEEEEEECCCCCEEEECCCC-------C
Q ss_conf 33467123089843-------999985899995590446654101442355201266102799802360544-------5
Q 002659 655 VLFDGGEFLVEELL-------GLNHLEVLSLTLRSPYALQSFLTSHKLQCCTQALFLQYFKDSTSLVVSSLA-------N 720 (896)
Q Consensus 655 ~~~~~~~~~~~~L~-------~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~-------~ 720 (896)
..+..+. .+.+|+.|.++.+....++..... ....++.|.+..+... .++...+. +
T Consensus 417 -------~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~--~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~ 486 (636)
T 4eco_A 417 -------VDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFS--TGSPLSSINLMGNMLT-EIPKNSLKDENENFKN 486 (636)
T ss_dssp -------TTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHH--TTCCCSEEECCSSCCS-BCCSSSSEETTEECTT
T ss_pred -------CCHHHHCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHC--CCCCCCEEECCCCCCC-CCCHHHHCCCCCCCCC
T ss_conf -------65244200220112589888897727966867878871--5898898989799788-7397884044001221
Q ss_pred CCCCCEEEECCCCCCCEEEECCCCCCCCCCCCCCCEEEECCCCCCCCCC-CCCCCCCCCEEEEECCC-----C-CCHHCC
Q ss_conf 6786768653688872577167775444257775489823478888995-22379998779582373-----2-100013
Q 002659 721 LKRLNVLRIADCEKLEELKIDYTGEIQHFGFRSLCKVEIARCQKLKDLT-FLVFAPNLESIEVKSCL-----A-LEEIVS 793 (896)
Q Consensus 721 ~~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~l~~c~-----~-l~~l~~ 793 (896)
+++|+.|++.+| .++.++..+.. ..+++|+.|++++| .+..+| .+..+++|+.|++++|. . ...++
T Consensus 487 l~~L~~L~Ls~N-~l~~lp~~~~~----~~l~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p- 559 (636)
T 4eco_A 487 TYLLTSIDLRFN-KLTKLSDDFRA----TTLPYLVGIDLSYN-SFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWP- 559 (636)
T ss_dssp GGGCCEEECCSS-CCCBCCGGGST----TTCTTCCEEECCSS-CCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCC-
T ss_pred CCCCCEEECCCC-CCCCCCHHHHH----CCCCCCCEEECCCC-CCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCH-
T ss_conf 477338989699-38816854534----45887698989899-887768235308887878898886656673121273-
Q ss_pred CCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCC
Q ss_conf 675447787767653586216777566127798789983479674775778888
Q 002659 794 DVPEAMGNLNLFAKLQYLELLGLPNLKSIYWKPLSFPRLKEMTIITCNKLKKLP 847 (896)
Q Consensus 794 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~i~~C~~L~~Lp 847 (896)
..+..+++|+.|++++|. +..++... +++|+.|.+.+| .+..++
T Consensus 560 ------~~l~~l~~L~~L~Ls~N~-l~~ip~~~--~~~L~~L~Ls~N-~l~~~~ 603 (636)
T 4eco_A 560 ------EGITLCPSLTQLQIGSND-IRKVNEKI--TPNISVLDIKDN-PNISID 603 (636)
T ss_dssp ------TTGGGCSSCCEEECCSSC-CCBCCSCC--CTTCCEEECCSC-TTCEEE
T ss_pred ------HHHHCCCCCCEEECCCCC-CCCCCHHH--HCCCCEEECCCC-CCCCCC
T ss_conf ------778569987889898994-77059768--386789987699-876336
Done!