BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002660
(895 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2R60|A Chain A, Structure Of Apo Sucrose Phosphate Synthase (Sps) Of
Halothermothrix Orenii
pdb|2R66|A Chain A, Complex Structure Of Sucrose Phosphate Synthase (Sps)-F6p
Of Halothermothrix Orenii
pdb|2R68|A Chain A, Complex Structure Of Sucrose Phosphate Synthase (Sps)-S6p
Of Halothermothrix Orenii
Length = 499
Score = 171 bits (434), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 157/514 (30%), Positives = 237/514 (46%), Gaps = 70/514 (13%)
Query: 27 DTGGQVKYVVELARALGSMPGVYRVDLLTRQVSAPDVDWSYGEPTEMLTPRNSDDFMDDM 86
D GGQ+ YV E++ AL M GV +VD++TR++ D +W P S + +D
Sbjct: 31 DFGGQLVYVKEVSLALAEM-GV-QVDIITRRIK--DENW----------PEFSGE-IDYY 75
Query: 87 GESSGAYIIRIPFGPKDKYIAKELLWPHIPEFVDGALNHIIRMSNVLGEQIGGGKPVWPV 146
E++ I+RIPFG DK++ KE LWP++ E+V N II G+ +P
Sbjct: 76 QETNKVRIVRIPFG-GDKFLPKEELWPYLHEYV----NKIINFYREEGK--------FPQ 122
Query: 147 AIHGHYXXXXXXXXXXXXXXNVPMLFTGHSLGRDKLEQLLKQARLSRDEINATYKIMRRI 206
+ HY +P FTGHSLG K+E+L + E++ +K RRI
Sbjct: 123 VVTTHYGDGGLAGVLLKNIKGLPFTFTGHSLGAQKMEKLNVNTS-NFKEMDERFKFHRRI 181
Query: 207 EAEELSLDASEIVITSTRQEIEEQWR--LYDGFDPVLERKLRARIKRNVSCYGKFMPRMA 264
AE L++ ++ +I ST QE Q+ LY G NV KF +
Sbjct: 182 IAERLTMSYADKIIVSTSQERFGQYSHDLYRG-------------AVNVEDDDKF----S 224
Query: 265 IIPPGMEFHHIVPQDGDMDGETEGNEDNPASPDPPIWSEIMRFFTNPRKPVILALARPDP 324
+IPPG+ DG+ + + D + SE M P I+A +R D
Sbjct: 225 VIPPGVNTRVF---DGEYGDKIKAKITKYLERD--LGSERMEL------PAIIASSRLDQ 273
Query: 325 KKNITTLVKAFGECRPLRELANLTLIM-GNRDGIDEMXXXXXXXXX---XXXXXIDKYDL 380
KKN LV+A+ + + L++ ANL L + G + ++ ID D
Sbjct: 274 KKNHYGLVEAYVQNKELQDKANLVLTLRGIENPFEDYSRAGQEEKEILGKIIELIDNNDC 333
Query: 381 YGQVAYPKHHKQSDVPEIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPIVATKNGGP 440
G+V+ + Q ++ Y A VF +F EPFGL +EA A GLP V T+NGGP
Sbjct: 334 RGKVSMFPLNSQQELAGCYAYLASKGSVFALTSFYEPFGLAPVEAMASGLPAVVTRNGGP 393
Query: 441 VDIHRVLDNGLLVDPHDQQSVADALLKLVADKQLWARCRQNGLKNI-HLFSWPEHCKTYL 499
+I G+LVDP D + +A LLK ++ W+ ++ G + + ++W E + YL
Sbjct: 394 AEILDGGKYGVLVDPEDPEDIARGLLKAFESEETWSAYQEKGKQRVEERYTWQETARGYL 453
Query: 500 SRIAGCKPRHPQWQRNDDGGETSESD---SPGDS 530
I R + D+GG + D +PG S
Sbjct: 454 EVIQEIADRKDE---EDEGGSLNIPDYFTNPGAS 484
>pdb|3S28|A Chain A, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|B Chain B, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|C Chain C, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|D Chain D, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|E Chain E, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|F Chain F, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|G Chain G, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|H Chain H, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S29|A Chain A, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|B Chain B, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|C Chain C, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|D Chain D, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|E Chain E, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|F Chain F, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|G Chain G, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|H Chain H, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications
Length = 816
Score = 122 bits (306), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 136/526 (25%), Positives = 228/526 (43%), Gaps = 64/526 (12%)
Query: 1 MIFNNYFACSIHGLIRGENMELGRDSDTGGQVKYVVELARALG-------SMPGVY---R 50
M+FN S HG +N+ LG DTGGQV Y+++ RAL G+ R
Sbjct: 277 MVFN-VVILSPHGYFAQDNV-LGY-PDTGGQVVYILDQVRALEIEMLQRIKQQGLNIKPR 333
Query: 51 VDLLTRQVSAPD-VDWSYGEPTEMLTPRNSDDFMDDMGESSGAYIIRIPF----GPKDKY 105
+ +LTR + PD V + GE E + +S I+R+PF G K+
Sbjct: 334 ILILTRLL--PDAVGTTCGERLERVY------------DSEYCDILRVPFRTEKGIVRKW 379
Query: 106 IAKELLWPHIPEFVDGALNHIIRMSNVLGEQIGGGKPVWPVAIHGHYXXXXXXXXXXXXX 165
I++ +WP++ + + A + + N GKP I G+Y
Sbjct: 380 ISRFEVWPYLETYTEDAAVELSKELN--------GKPD---LIIGNYSDGNLVASLLAHK 428
Query: 166 XNVPMLFTGHSLGRDKLEQLLKQARLSRDEINATYKIMRRIEAEELSLDASEIVITSTRQ 225
V H+L + K + + +++ Y + A+ +++ ++ +ITST Q
Sbjct: 429 LGVTQCTIAHALEKTKY----PDSDIYWKKLDDKYHFSCQFTADIFAMNHTDFIITSTFQ 484
Query: 226 EIEEQWRLYDGFDPVLERKLRARIKRNVSCYGKFMPRMAIIPPGMEFHHIVPQDGDMDGE 285
EI ++ L + R V F P+ I+ PG + P +
Sbjct: 485 EIAGSKETVGQYESHTAFTLPG-LYRVVHGIDVFDPKFNIVSPGADMSIYFPYTEEKRRL 543
Query: 286 TEGNEDNPASPDPPIWSEI-----MRFFTNPRKPVILALARPDPKKNITTLVKAFGECRP 340
T+ + + + ++S++ + + +KP++ +AR D KN++ LV+ +G+
Sbjct: 544 TKFH----SEIEELLYSDVENKEHLCVLKDKKKPILFTMARLDRVKNLSGLVEWYGKNTR 599
Query: 341 LRELANLTLIMGNRDGIDEMXXXXXXXXXXXXXXIDKYDLYGQVAY-PKHHKQSDVPEIY 399
LRELANL ++ G+R + I++Y L GQ + + E+Y
Sbjct: 600 LRELANLVVVGGDRRK-ESKDNEEKAEMKKMYDLIEEYKLNGQFRWISSQMDRVRNGELY 658
Query: 400 RLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPIVATKNGGPVDIHRVLDNGLLVDPH--D 457
R TKG F+ PA E FGLT++EA GLP AT GGP +I +G +DP+ D
Sbjct: 659 RYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVHGKSGFHIDPYHGD 718
Query: 458 Q--QSVADALLKLVADKQLWARCRQNGLKNI-HLFSWPEHCKTYLS 500
Q ++AD K D W + GL+ I ++W + + L+
Sbjct: 719 QAADTLADFFTKCKEDPSHWDEISKGGLQRIEEKYTWQIYSQRLLT 764
>pdb|3S27|A Chain A, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|B Chain B, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|C Chain C, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|D Chain D, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|E Chain E, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|F Chain F, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|G Chain G, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|H Chain H, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications
Length = 816
Score = 119 bits (297), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 136/522 (26%), Positives = 225/522 (43%), Gaps = 63/522 (12%)
Query: 5 NYFACSIHGLIRGENMELGRDSDTGGQVKYVVELARALG-------SMPGVY---RVDLL 54
N S HG +N+ LG DTGGQV Y+++ RAL G+ R+ +L
Sbjct: 280 NVVILSPHGYFAQDNV-LGY-PDTGGQVVYILDQVRALEIEXLQRIKQQGLNIKPRILIL 337
Query: 55 TRQVSAPD-VDWSYGEPTEMLTPRNSDDFMDDMGESSGAYIIRIPF----GPKDKYIAKE 109
TR + PD V + GE E + +S I+R+PF G K+I++
Sbjct: 338 TRLL--PDAVGTTCGERLERVY------------DSEYCDILRVPFRTEKGIVRKWISRF 383
Query: 110 LLWPHIPEFVDGALNHIIRMSNVLGEQIGGGKPVWPVAIHGHYXXXXXXXXXXXXXXNVP 169
+WP++ + + A + + N GKP I G+Y V
Sbjct: 384 EVWPYLETYTEDAAVELSKELN--------GKPD---LIIGNYSDGNLVASLLAHKLGVT 432
Query: 170 MLFTGHSLGRDKLEQLLKQARLSRDEINATYKIMRRIEAEELSLDASEIVITSTRQEIEE 229
H+L + K + + +++ Y + A+ + + ++ +ITST QEI
Sbjct: 433 QCTIAHALEKTKY----PDSDIYWKKLDDKYHFSCQFTADIFAXNHTDFIITSTFQEIAG 488
Query: 230 QWRLYDGFDPVLERKLRARIKRNVSCYGKFMPRMAIIPPGMEFHHIVPQDGDMDGETEGN 289
++ L + R V F P+ I+ PG + P + T+ +
Sbjct: 489 SKETVGQYESHTAFTLPG-LYRVVHGIDVFDPKFNIVSPGADXSIYFPYTEEKRRLTKFH 547
Query: 290 EDNPASPDPPIWSEI-----MRFFTNPRKPVILALARPDPKKNITTLVKAFGECRPLREL 344
+ + ++S++ + + +KP++ AR D KN++ LV+ +G+ LREL
Sbjct: 548 ----SEIEELLYSDVENKEHLCVLKDKKKPILFTXARLDRVKNLSGLVEWYGKNTRLREL 603
Query: 345 ANLTLIMGNRDGIDEMXXXXXXXXXXXXXXIDKYDLYGQVAY-PKHHKQSDVPEIYRLAA 403
ANL ++ G+R + I++Y L GQ + + E+YR
Sbjct: 604 ANLVVVGGDRRK-ESKDNEEKAEXKKXYDLIEEYKLNGQFRWISSQXDRVRNGELYRYIC 662
Query: 404 KTKGVFINPAFIEPFGLTLIEAAAHGLPIVATKNGGPVDIHRVLDNGLLVDPH--DQ--Q 459
TKG F+ PA E FGLT++EA GLP AT GGP +I +G +DP+ DQ
Sbjct: 663 DTKGAFVQPALYEAFGLTVVEAXTCGLPTFATCKGGPAEIIVHGKSGFHIDPYHGDQAAD 722
Query: 460 SVADALLKLVADKQLWARCRQNGLKNI-HLFSWPEHCKTYLS 500
++AD K D W + GL+ I ++W + + L+
Sbjct: 723 TLADFFTKCKEDPSHWDEISKGGLQRIEEKYTWQIYSQRLLT 764
>pdb|3C4Q|A Chain A, Structure Of The Retaining Glycosyltransferase Msha : The
First Step In Mycothiol Biosynthesis. Organism :
Corynebacterium Glutamicum- Complex With Udp
pdb|3C4Q|B Chain B, Structure Of The Retaining Glycosyltransferase Msha : The
First Step In Mycothiol Biosynthesis. Organism :
Corynebacterium Glutamicum- Complex With Udp
pdb|3C4V|A Chain A, Structure Of The Retaining Glycosyltransferase Msha:the
First Step In Mycothiol Biosynthesis. Organism:
Corynebacterium Glutamicum : Complex With Udp And
1l-Ins-1- P.
pdb|3C4V|B Chain B, Structure Of The Retaining Glycosyltransferase Msha:the
First Step In Mycothiol Biosynthesis. Organism:
Corynebacterium Glutamicum : Complex With Udp And
1l-Ins-1- P
Length = 426
Score = 63.2 bits (152), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 88/400 (22%), Positives = 156/400 (39%), Gaps = 75/400 (18%)
Query: 94 IIRIPFGPKDKYIAKELLWPHIPEFVDGALNHIIRMSNVLGEQIGGGKPVWPVAIHGHYX 153
+I I GP + ++KE L + F G L+ R + V IH HY
Sbjct: 65 VINIAAGPYEG-LSKEELPTQLAAFTGGMLSFTRR------------EKVTYDLIHSHYW 111
Query: 154 XXXXXXXXXXXXXNVPMLFTGHSLGRDKLEQLLKQARLSRDEINATYKIMRRIEAEELSL 213
+P++ T H+L K RD+ + RRI ++L +
Sbjct: 112 LSGQVGWLLRDLWRIPLIHTAHTLAAVK--------NSYRDDSDTPESEARRICEQQL-V 162
Query: 214 DASEIVITSTRQEIEEQWRLYDGFDPVLERKLRARIKRNVSCYGKFMPRMAIIPPGMEFH 273
D ++++ +T++E+++ YD DP R++++ PG +
Sbjct: 163 DNADVLAVNTQEEMQDLMHHYDA-DP---------------------DRISVVSPGADVE 200
Query: 274 HIVPQDGDMDGETEGNEDNPASPDPPIWSEIMRFFTNPRKPVILALARPDPKKNITTLVK 333
P G E + P+ ++++ F + R P K L+K
Sbjct: 201 LYSP------GNDRATERSRRELGIPLHTKVVAF-----------VGRLQPFKGPQVLIK 243
Query: 334 AFGECRPLRELANLTLIM-GNRDGIDEMXXXXXXXXXXXXXXIDKYDLYGQVAYPKHHKQ 392
A NL +I+ G G + ++ + ++ +
Sbjct: 244 AVAALFDRDPDRNLRVIICGGPSGPNATPDTYRHMA-------EELGVEKRIRFLDPRPP 296
Query: 393 SDVPEIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPIVATKNGG-PVDIHRVLDNGL 451
S++ +YR A + P+F E FGL +EA A G P++A + GG P+ + + GL
Sbjct: 297 SELVAVYRAA----DIVAVPSFNESFGLVAMEAQASGTPVIAARVGGLPIAVAEG-ETGL 351
Query: 452 LVDPHDQQSVADALLKLVADKQLWARCRQNGLKNIHLFSW 491
LVD H + ADAL L+ D + R ++ +++ FSW
Sbjct: 352 LVDGHSPHAWADALATLLDDDETRIRMGEDAVEHARTFSW 391
>pdb|3C48|A Chain A, Structure Of The Retaining Glycosyltransferase Msha: The
First Step In Mycothiol Biosynthesis. Organism:
Corynebacterium Glutamicum- Apo (Open) Structure.
pdb|3C48|B Chain B, Structure Of The Retaining Glycosyltransferase Msha: The
First Step In Mycothiol Biosynthesis. Organism:
Corynebacterium Glutamicum- Apo (Open) Structure
Length = 438
Score = 63.2 bits (152), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 88/400 (22%), Positives = 156/400 (39%), Gaps = 75/400 (18%)
Query: 94 IIRIPFGPKDKYIAKELLWPHIPEFVDGALNHIIRMSNVLGEQIGGGKPVWPVAIHGHYX 153
+I I GP + ++KE L + F G L+ R + V IH HY
Sbjct: 85 VINIAAGPYEG-LSKEELPTQLAAFTGGMLSFTRR------------EKVTYDLIHSHYW 131
Query: 154 XXXXXXXXXXXXXNVPMLFTGHSLGRDKLEQLLKQARLSRDEINATYKIMRRIEAEELSL 213
+P++ T H+L K RD+ + RRI ++L +
Sbjct: 132 LSGQVGWLLRDLWRIPLIHTAHTLAAVK--------NSYRDDSDTPESEARRICEQQL-V 182
Query: 214 DASEIVITSTRQEIEEQWRLYDGFDPVLERKLRARIKRNVSCYGKFMPRMAIIPPGMEFH 273
D ++++ +T++E+++ YD DP R++++ PG +
Sbjct: 183 DNADVLAVNTQEEMQDLMHHYDA-DP---------------------DRISVVSPGADVE 220
Query: 274 HIVPQDGDMDGETEGNEDNPASPDPPIWSEIMRFFTNPRKPVILALARPDPKKNITTLVK 333
P G E + P+ ++++ F + R P K L+K
Sbjct: 221 LYSP------GNDRATERSRRELGIPLHTKVVAF-----------VGRLQPFKGPQVLIK 263
Query: 334 AFGECRPLRELANLTLIM-GNRDGIDEMXXXXXXXXXXXXXXIDKYDLYGQVAYPKHHKQ 392
A NL +I+ G G + ++ + ++ +
Sbjct: 264 AVAALFDRDPDRNLRVIICGGPSGPNATPDTYRHMA-------EELGVEKRIRFLDPRPP 316
Query: 393 SDVPEIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPIVATKNGG-PVDIHRVLDNGL 451
S++ +YR A + P+F E FGL +EA A G P++A + GG P+ + + GL
Sbjct: 317 SELVAVYRAA----DIVAVPSFNESFGLVAMEAQASGTPVIAARVGGLPIAVAEG-ETGL 371
Query: 452 LVDPHDQQSVADALLKLVADKQLWARCRQNGLKNIHLFSW 491
LVD H + ADAL L+ D + R ++ +++ FSW
Sbjct: 372 LVDGHSPHAWADALATLLDDDETRIRMGEDAVEHARTFSW 411
>pdb|2BIS|A Chain A, Structure Of Glycogen Synthase From Pyrococcus Abyssi
pdb|2BIS|B Chain B, Structure Of Glycogen Synthase From Pyrococcus Abyssi
pdb|2BIS|C Chain C, Structure Of Glycogen Synthase From Pyrococcus Abyssi
Length = 440
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 50/100 (50%), Gaps = 2/100 (2%)
Query: 410 INPAFIEPFGLTLIEAAAHGLPIVATKNGGPVDIHRVLDNGLLVDPHDQQSVADALLK-L 468
I P++ EPFGL +EA G +A+ GG DI + G+LV D +A+A+LK L
Sbjct: 336 IIPSYFEPFGLVALEAMCLGAIPIASAVGGLRDI-ITNETGILVKAGDPGELANAILKAL 394
Query: 469 VADKQLWARCRQNGLKNIHLFSWPEHCKTYLSRIAGCKPR 508
+ ++ R+N K FSW + + Y+ G R
Sbjct: 395 ELSRSDLSKFRENCKKRAMSFSWEKSAERYVKAYTGSIDR 434
>pdb|3FRO|A Chain A, Crystal Structure Of Pyrococcus Abyssi Glycogen Synthase
With Open And Closed Conformations
pdb|3FRO|B Chain B, Crystal Structure Of Pyrococcus Abyssi Glycogen Synthase
With Open And Closed Conformations
pdb|3FRO|C Chain C, Crystal Structure Of Pyrococcus Abyssi Glycogen Synthase
With Open And Closed Conformations
Length = 439
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 50/100 (50%), Gaps = 2/100 (2%)
Query: 410 INPAFIEPFGLTLIEAAAHGLPIVATKNGGPVDIHRVLDNGLLVDPHDQQSVADALLK-L 468
I P++ EPFGL +EA G +A+ GG DI + G+LV D +A+A+LK L
Sbjct: 335 IIPSYFEPFGLVALEAMCLGAIPIASAVGGLRDI-ITNETGILVKAGDPGELANAILKAL 393
Query: 469 VADKQLWARCRQNGLKNIHLFSWPEHCKTYLSRIAGCKPR 508
+ ++ R+N K FSW + + Y+ G R
Sbjct: 394 ELSRSDLSKFRENCKKRAMSFSWEKSAERYVKAYTGSIDR 433
>pdb|3L01|A Chain A, Crystal Structure Of Monomeric Glycogen Synthase From
Pyrococcus Abyssi
pdb|3L01|B Chain B, Crystal Structure Of Monomeric Glycogen Synthase From
Pyrococcus Abyssi
Length = 428
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 2/95 (2%)
Query: 410 INPAFIEPFGLTLIEAAAHGLPIVATKNGGPVDIHRVLDNGLLVDPHDQQSVADALLK-L 468
I P++ EPFGL +EA G +A+ GG DI + G+LV D +A+A+LK L
Sbjct: 335 IIPSYFEPFGLVALEAMCLGAIPIASAVGGLRDI-ITNETGILVKAGDPGELANAILKAL 393
Query: 469 VADKQLWARCRQNGLKNIHLFSWPEHCKTYLSRIA 503
+ ++ R+N K FSW + + Y+ A
Sbjct: 394 ELSRSDLSKFRENCKKRAMSFSWEKSAERYVKAYA 428
>pdb|2JJM|A Chain A, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|B Chain B, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|C Chain C, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|D Chain D, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|E Chain E, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|F Chain F, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|G Chain G, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|H Chain H, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|I Chain I, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|J Chain J, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|K Chain K, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|L Chain L, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558
Length = 394
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 36/59 (61%)
Query: 416 EPFGLTLIEAAAHGLPIVATKNGGPVDIHRVLDNGLLVDPHDQQSVADALLKLVADKQL 474
E FGL L+EA A G+P + T+ GG ++ + D G L + D VAD ++L+ D++L
Sbjct: 295 ESFGLVLLEAMACGVPCIGTRVGGIPEVIQHGDTGYLCEVGDTTGVADQAIQLLKDEEL 353
>pdb|3MBO|A Chain A, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|B Chain B, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|C Chain C, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|D Chain D, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|E Chain E, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|F Chain F, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|G Chain G, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|H Chain H, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
Length = 414
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 36/59 (61%)
Query: 416 EPFGLTLIEAAAHGLPIVATKNGGPVDIHRVLDNGLLVDPHDQQSVADALLKLVADKQL 474
E FGL L+EA A G+P + T+ GG ++ + D G L + D VAD ++L+ D++L
Sbjct: 315 ESFGLVLLEAMACGVPCIGTRVGGIPEVIQHGDTGYLCEVGDTTGVADQAIQLLKDEEL 373
>pdb|3OKC|A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb'
Bound To Gdp (Orthorhombic Crystal Form)
pdb|3OKP|A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb'
Bound To Gdp-Man (Orthorhombic Crystal Form)
Length = 394
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 77/181 (42%), Gaps = 15/181 (8%)
Query: 292 NPASPDPPIWSEIMRFFTNPRKPVILALARPDPKKNITTLVKAFGECRPLRELANLTLIM 351
PA+P+ + FT+ PVI +R P+K +L+KA + R A L ++
Sbjct: 178 TPATPEDKSATRKKLGFTD-TTPVIACNSRLVPRKGQDSLIKAMPQVIAARPDAQLLIVG 236
Query: 352 GNRDGIDEMXXXXXXXXXXXXXXIDKYDLYGQVAYPKHHKQSDVPEIYRLAAKTKGVFIN 411
R G++ Y +I+ + A+T+G ++
Sbjct: 237 SGR--------YESTLRRLATDVSQNVKFLGRLEYQDMINTLAAADIFAMPARTRGGGLD 288
Query: 412 PAFIEPFGLTLIEAAAHGLPIVA-TKNGGPVDIHRVLDNGLLVDPHDQQSVADALLKLVA 470
+E G+ +EA A G+P++A T G P + GL+V+ D +++ L++L+
Sbjct: 289 ---VEGLGIVYLEAQACGVPVIAGTSGGAPETVTPA--TGLVVEGSDVDKLSELLIELLD 343
Query: 471 D 471
D
Sbjct: 344 D 344
>pdb|3OKA|A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb' In
Complex With Gdp-Man (Triclinic Crystal Form)
pdb|3OKA|B Chain B, Crystal Structure Of Corynebacterium Glutamicum Pimb' In
Complex With Gdp-Man (Triclinic Crystal Form)
Length = 381
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 77/181 (42%), Gaps = 15/181 (8%)
Query: 292 NPASPDPPIWSEIMRFFTNPRKPVILALARPDPKKNITTLVKAFGECRPLRELANLTLIM 351
PA+P+ + FT+ PVI +R P+K +L+KA + R A L ++
Sbjct: 178 TPATPEDKSATRKKLGFTD-TTPVIACNSRLVPRKGQDSLIKAMPQVIAARPDAQLLIVG 236
Query: 352 GNRDGIDEMXXXXXXXXXXXXXXIDKYDLYGQVAYPKHHKQSDVPEIYRLAAKTKGVFIN 411
R G++ Y +I+ + A+T+G ++
Sbjct: 237 SGR--------YESTLRRLATDVSQNVKFLGRLEYQDMINTLAAADIFAMPARTRGGGLD 288
Query: 412 PAFIEPFGLTLIEAAAHGLPIVA-TKNGGPVDIHRVLDNGLLVDPHDQQSVADALLKLVA 470
+E G+ +EA A G+P++A T G P + GL+V+ D +++ L++L+
Sbjct: 289 ---VEGLGIVYLEAQACGVPVIAGTSGGAPETVTPA--TGLVVEGSDVDKLSELLIELLD 343
Query: 471 D 471
D
Sbjct: 344 D 344
>pdb|2BFW|A Chain A, Structure Of The C Domain Of Glycogen Synthase From
Pyrococcus Abyssi
Length = 200
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 410 INPAFIEPFGLTLIEAAAHGLPIVATKNGGPVDIHRVLDNGLLVDPHDQQSVADALLK-L 468
I P++ EPFGL +EA G +A+ GG DI + G+LV D +A+A+LK L
Sbjct: 120 IIPSYFEPFGLVALEAMCLGAIPIASAVGGLRDII-TNETGILVKAGDPGELANAILKAL 178
Query: 469 VADKQLWARCRQNGLKNIHLFS 490
+ ++ R+N K FS
Sbjct: 179 ELSRSDLSKFRENCKKRAMSFS 200
>pdb|2GEJ|A Chain A, Crystal Structure Of Phosphatidylinositol
Mannosyltransferase (Pima) From Mycobacterium Smegmatis
In Complex With Gdp-Man
pdb|2GEK|A Chain A, Crystal Structure Of Phosphatidylinositol
Mannosyltransferase (Pima) From Mycobacterium Smegmatis
In Complex With Gdp
Length = 406
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 38/79 (48%), Gaps = 6/79 (7%)
Query: 416 EPFGLTLIEAAAHGLPIVATKNGGPVDIHRVL---DNGLLVDPHDQQSVADALLKLVADK 472
E FG+ L+EA A G +VA+ RVL D G LV D +A AL+ ++ D
Sbjct: 294 ESFGIVLVEAMAAGTAVVASDLDA---FRRVLADGDAGRLVPVDDADGMAAALIGILEDD 350
Query: 473 QLWARCRQNGLKNIHLFSW 491
QL A + +H + W
Sbjct: 351 QLRAGYVARASERVHRYDW 369
>pdb|2IW1|A Chain A, Crystal Structure Of Waag, A Glycosyltransferase Involved
In Lipopolysaccharide Biosynthesis
Length = 374
Score = 37.7 bits (86), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 51/108 (47%), Gaps = 12/108 (11%)
Query: 392 QSDVPEIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPIVATKNGGPVDIHRVLDNG- 450
++DV E+ A + ++PA+ E G+ L+EA GLP++ T G H + D
Sbjct: 261 RNDVSELMAAA----DLLLHPAYQEAAGIVLLEAITAGLPVLTTAVCGYA--HYIADANC 314
Query: 451 --LLVDPHDQQSVADALLKLVADKQL---WARCRQNGLKNIHLFSWPE 493
++ +P Q+ + + L K + L WA ++ L+S PE
Sbjct: 315 GTVIAEPFSQEQLNEVLRKALTQSPLRMAWAENARHYADTQDLYSLPE 362
>pdb|2IV7|A Chain A, Crystal Structure Of Waag, A Glycosyltransferase Involved
In Lipopolysaccharide Biosynthesis
Length = 374
Score = 36.2 bits (82), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 8/89 (8%)
Query: 411 NPAFIEPFGLTLIEAAAHGLPIVATKNGGPVDIHRVLDNG---LLVDPHDQQSVADALLK 467
+PA+ E G+ L+EA GLP++ T G H + D ++ +P Q+ + + L K
Sbjct: 276 HPAYQEAAGIVLLEAITAGLPVLTTAVCGYA--HYIADANCGTVIAEPFSQEQLNEVLRK 333
Query: 468 LVADKQL---WARCRQNGLKNIHLFSWPE 493
+ L WA ++ L+S PE
Sbjct: 334 ALTQSPLRXAWAENARHYADTQDLYSLPE 362
>pdb|1VPB|A Chain A, Crystal Structure Of A Putative Modulator Of Dna Gyrase
(Bt3649) From Bacteroides Thetaiotaomicron Vpi-5482 At
1.75 A Resolution
Length = 451
Score = 34.3 bits (77), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 23/108 (21%), Positives = 45/108 (41%), Gaps = 19/108 (17%)
Query: 766 ELRKVLRIQALRCHVIYCQNGSRINVIPVLASRSQALRYLYLRWGVELSKMVVFVGESGD 825
E R + L + I N ++ V P ++ S + V E+GD
Sbjct: 317 ERRSIFDKGVLNTYFIDTYNAKKMGVDPTISGSS------------------ILVMETGD 358
Query: 826 TDYEGLLGGVHKTVILKGICSSSSNQIHANRSYPLSDVMPIDSPNIVQ 873
+ +GL+ GV K +++ G ++N + SY + + I++ + Q
Sbjct: 359 KNLDGLIAGVEKGILVTGFNGGNNNSSTGDFSYGIEGFL-IENGKLTQ 405
>pdb|2F9F|A Chain A, Crystal Structure Of The Putative Mannosyl Transferase
(Wbaz-1)from Archaeoglobus Fulgidus, Northeast
Structural Genomics Target Gr29a
Length = 177
Score = 33.9 bits (76), Expect = 0.39, Method: Composition-based stats.
Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 397 EIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPIVATKNGG 439
E+ L ++ KG+ A E FGLT IEA A G P++A GG
Sbjct: 90 ELIDLYSRCKGLLCT-AKDEDFGLTPIEAXASGKPVIAVNEGG 131
>pdb|2NW0|A Chain A, Crystal Structure Of A Lysin
pdb|2NW0|B Chain B, Crystal Structure Of A Lysin
Length = 189
Score = 32.7 bits (73), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 28/59 (47%)
Query: 392 QSDVPEIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPIVATKNGGPVDIHRVLDNG 450
Q+ + E+YRL AK G+++ E FG I+ +P K P D+ + + G
Sbjct: 103 QAFIDELYRLGAKKVGLYVGHHKYEEFGAAQIKCDFTWIPRYGAKPAYPCDLWQYDEYG 161
>pdb|3HMC|A Chain A, Endolysin From Bacillus Anthracis
Length = 192
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 392 QSDVPEIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGLP-IVATKNGGPVDIHRVLDNG 450
Q+ + E+YRL AK G+++ PFG+ +++ +P K P DI + + G
Sbjct: 107 QAFIDELYRLGAKKVGLYVGHHMYTPFGMANVKSDFVWIPRYGGNKPAYPCDIWQYTETG 166
>pdb|3NIX|A Chain A, Crystal Structure Of FlavoproteinDEHYDROGENASE FROM
CYTOPHAGA Hutchinsonii. Northeast Structural Genomics
Consortium Target Chr43.
pdb|3NIX|B Chain B, Crystal Structure Of FlavoproteinDEHYDROGENASE FROM
CYTOPHAGA Hutchinsonii. Northeast Structural Genomics
Consortium Target Chr43.
pdb|3NIX|C Chain C, Crystal Structure Of FlavoproteinDEHYDROGENASE FROM
CYTOPHAGA Hutchinsonii. Northeast Structural Genomics
Consortium Target Chr43.
pdb|3NIX|D Chain D, Crystal Structure Of FlavoproteinDEHYDROGENASE FROM
CYTOPHAGA Hutchinsonii. Northeast Structural Genomics
Consortium Target Chr43.
pdb|3NIX|E Chain E, Crystal Structure Of FlavoproteinDEHYDROGENASE FROM
CYTOPHAGA Hutchinsonii. Northeast Structural Genomics
Consortium Target Chr43.
pdb|3NIX|F Chain F, Crystal Structure Of FlavoproteinDEHYDROGENASE FROM
CYTOPHAGA Hutchinsonii. Northeast Structural Genomics
Consortium Target Chr43.
pdb|3NIX|G Chain G, Crystal Structure Of FlavoproteinDEHYDROGENASE FROM
CYTOPHAGA Hutchinsonii. Northeast Structural Genomics
Consortium Target Chr43.
pdb|3NIX|H Chain H, Crystal Structure Of FlavoproteinDEHYDROGENASE FROM
CYTOPHAGA Hutchinsonii. Northeast Structural Genomics
Consortium Target Chr43
Length = 421
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 7/73 (9%)
Query: 242 ERKLRARIKRNVSCYGKFMPRMAII--PPGME-----FHHIVPQDGDMDGETEGNEDNPA 294
+R++ AR + S YG+ +PR + P G E F HI + E EGN
Sbjct: 150 KREIEARFIIDASGYGRVIPRXFGLDKPSGFESRRTLFTHIKDVKRPVAAEXEGNRITAV 209
Query: 295 SPDPPIWSEIMRF 307
P +W ++ F
Sbjct: 210 VHKPKVWIWVIPF 222
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,851,912
Number of Sequences: 62578
Number of extensions: 1215012
Number of successful extensions: 2680
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 2645
Number of HSP's gapped (non-prelim): 25
length of query: 895
length of database: 14,973,337
effective HSP length: 108
effective length of query: 787
effective length of database: 8,214,913
effective search space: 6465136531
effective search space used: 6465136531
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)