Query 002660
Match_columns 895
No_of_seqs 524 out of 4699
Neff 8.8
Searched_HMMs 29240
Date Tue Mar 26 21:57:00 2013
Command hhsearch -i /local_scratch/syshi/lefta3m2/002660.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H2_63-67//hhsearch_pdb/002660hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3s28_A Sucrose synthase 1; gly 1.0 1 1 460.4 37.8 454 1-505 277-769 (816)
2 2r60_A Glycosyl transferase, g 1.0 1 1 385.2 32.5 441 4-510 8-464 (499)
3 3fro_A GLGA glycogen synthase; 1.0 1 1 359.3 32.3 428 3-509 2-434 (439)
4 3c48_A Predicted glycosyltrans 1.0 1 1 357.2 36.7 407 1-510 18-430 (438)
5 3vue_A GBSS-I, granule-bound s 1.0 1 1 340.1 31.0 454 3-508 9-514 (536)
6 1rzu_A Glycogen synthase 1; gl 1.0 1 1 332.5 28.7 447 4-509 1-479 (485)
7 2qzs_A Glycogen synthase; glyc 1.0 1 1 328.6 31.5 438 4-509 1-480 (485)
8 3okp_A GDP-mannose-dependent a 1.0 1 1 327.7 34.2 375 1-511 2-385 (394)
9 2iw1_A Lipopolysaccharide core 1.0 1 1 320.1 26.1 369 4-507 1-373 (374)
10 2jjm_A Glycosyl transferase, g 1.0 1 1 315.2 37.6 362 26-509 24-389 (394)
No 1
>3s28_A Sucrose synthase 1; glycosyltransferase, sucrose metabolism, sugar donar complex rossmann fold, GT-B fold, glycosyltansferase, UDP-glucose; HET: UDP LCN NHF; 2.80A {Arabidopsis thaliana} PDB: 3s27_A* 3s29_A*
Probab=1.00 E-value=1 Score=460.37 Aligned_cols=454 Identities=27% Similarity=0.455 Sum_probs=350.6
Q ss_pred CCCEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHH--------HHHHHHCCCCEEEEE----EEECCCCCCCCCCCCC
Q ss_conf 9310675332044445676568888999841579999--------999980599911799----9526855999998879
Q 002660 1 MIFNNYFACSIHGLIRGENMELGRDSDTGGQVKYVVE--------LARALGSMPGVYRVD----LLTRQVSAPDVDWSYG 68 (895)
Q Consensus 1 ~~~m~I~~is~~~~~~~~~~~~~~~~~~GG~~~~v~~--------La~~L~~~G~~h~V~----vvt~~~~~~~~~~~y~ 68 (895)
|+ |+|+|||+||++++.++ +|+ |||||++.||++ |+++|+++| |+|+ |+|+.+.++ ..++|.
T Consensus 277 ~~-~~i~~is~hg~~~~~~~-lG~-~dtGGq~vyV~e~~~al~~ela~~L~~~G--~~V~~~V~v~Tr~~~~~-~g~~y~ 350 (816)
T 3s28_A 277 MV-FNVVILSPHGYFAQDNV-LGY-PDTGGQVVYILDQVRALEIEMLQRIKQQG--LNIKPRILILTRLLPDA-VGTTCG 350 (816)
T ss_dssp CC-CEEEEECCSSCCCSSSC-TTS-TTCSHHHHHHHHHHHHHHHHHHHHHHHTT--CCCCCEEEEEEECCTTC-TTSSTT
T ss_pred CE-EEEEEECCCCCCCCCCC-CCC-CCCCCCEEEHHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECCCCCC-CCCCCC
T ss_conf 52-48999847766575445-788-88898365099899899999999999779--96200168996898787-777657
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCC----CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 7531158999986344579999709994689998----766322258998478899999999986332001138999887
Q 002660 69 EPTEMLTPRNSDDFMDDMGESSGAYIIRIPFGPK----DKYIAKELLWPHIPEFVDGALNHIIRMSNVLGEQIGGGKPVW 144 (895)
Q Consensus 69 ~~~e~~~~~~~~~~~~~~~~~~gv~i~~i~~~~~----~~~~~~~~~~~~l~~f~~~~~~~~~~~~~~l~~~~~~~~~~~ 144 (895)
.+.+.+. ..+|++|+|+|+++. ++|+++..+|+++..|...++..+... ...+
T Consensus 351 ~~~e~i~------------~~~gv~I~RvP~~~~~g~l~~~l~k~~L~~~L~~F~~~~l~~il~~-----------~~~~ 407 (816)
T 3s28_A 351 ERLERVY------------DSEYCDILRVPFRTEKGIVRKWISRFEVWPYLETYTEDAAVELSKE-----------LNGK 407 (816)
T ss_dssp SSEEECT------------TCSSEEEEEECEEETTEEECSCCCTTTCGGGHHHHHHHHHHHHHHH-----------CSSC
T ss_pred CCCEEEC------------CCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-----------CCCC
T ss_conf 7511554------------8697599996687766543345657788999999999999999996-----------5899
Q ss_pred CCEEEECCCCCHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCH
Q ss_conf 82999235661128999850179989998089824149999997101588887654366778999841024689992796
Q 002660 145 PVAIHGHYADAGDSAALLSGALNVPMLFTGHSLGRDKLEQLLKQARLSRDEINATYKIMRRIEAEELSLDASEIVITSTR 224 (895)
Q Consensus 145 pDiVh~h~~~~~~~~~~~~~~~~ip~v~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~ad~Vi~~s~ 224 (895)
|||||+|++.+++++..+++.+++|+|+|.|+++..+... ....+..+...|++..++.+|+.+++.||.||++|.
T Consensus 408 PDVIHsH~~~sglva~llar~~gvP~V~T~Hsl~~~k~~~----~~~~~~~~~~~y~~~~r~~aE~~~l~~AD~VIa~S~ 483 (816)
T 3s28_A 408 PDLIIGNYSDGNLVASLLAHKLGVTQCTIAHALEKTKYPD----SDIYWKKLDDKYHFSCQFTADIFAMNHTDFIITSTF 483 (816)
T ss_dssp CSEEEEEHHHHHHHHHHHHHHHTCCEEEECSCCHHHHSTT----TTTTHHHHHHHHCHHHHHHHHHHHHHHSSEEEESCH
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCC----CCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCH
T ss_conf 7399968853899999999975998899981663001222----330155677888898888899999984999998889
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH--
Q ss_conf 999999965149995789999996721433358899988991999989997789999998778999999999994168--
Q 002660 225 QEIEEQWRLYDGFDPVLERKLRARIKRNVSCYGKFMPRMAIIPPGMEFHHIVPQDGDMDGETEGNEDNPASPDPPIWS-- 302 (895)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~~g~~~~~v~vip~Gid~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 302 (895)
.+++.+...+..+.......+ -...+.+...+++.+++.+||||+|.+.|.|....... ......
T Consensus 484 ~~~~~l~~~~~~y~~~~~~~~-p~Lyr~~~gI~~~~~ki~VIpnGVD~~~F~P~~~~~~R------------l~~~~~~i 550 (816)
T 3s28_A 484 QEIAGSKETVGQYESHTAFTL-PGLYRVVHGIDVFDPKFNIVSPGADMSIYFPYTEEKRR------------LTKFHSEI 550 (816)
T ss_dssp HHHHCCSSSCCTTGGGSSEEE-TTTEEEEESCCTTCTTEEECCCCCCTTTSCCTTCTTTC------------CGGGHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCC-CHHHHCCCCCCCCCCCEEEECCCCCHHHCCCCCHHHHH------------HHHCCCCC
T ss_conf 999999988877644201354-11221012244677887998897478872863103554------------32002320
Q ss_pred ---------HHHHHC--CCCCCCEEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHH
Q ss_conf ---------864213--899974999972789989989999999751254699719999814999642220028999999
Q 002660 303 ---------EIMRFF--TNPRKPVILALARPDPKKNITTLVKAFGECRPLRELANLTLIMGNRDGIDEMSSTSASVLLSV 371 (895)
Q Consensus 303 ---------~~~~~~--~~~~~~~il~vgrl~~~Kgi~~ll~A~~~l~~~~~~~~l~livG~~~~~~~~~~~~~~~~~~i 371 (895)
....++ ..+++++|+++||+++.||++.+++|+..+.+..+..++ +|+|++++......+..+...++
T Consensus 551 ~~~l~~p~~~r~~lg~l~~~~~~vIl~vGRl~~~KGid~LIeA~~~L~~~~~~v~L-vIvG~g~~~~~~~~e~~~~~~~L 629 (816)
T 3s28_A 551 EELLYSDVENKEHLCVLKDKKKPILFTMARLDRVKNLSGLVEWYGKNTRLRELANL-VVVGGDRRKESKDNEEKAEMKKM 629 (816)
T ss_dssp HHHHHCSCCBTTEESCBSCTTSCEEEEECCCCTTTTHHHHHHHHHHCHHHHHHCEE-EEECCCTTSCCCCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEE-EEEECCCCCCCCCHHHHHHHHHH
T ss_conf 00124605677774445789983999974472217999999999997855799699-99968875333433569999999
Q ss_pred HHHHHHCCCCCCEEECCCCCC----CCHHHHHHH-HHCCCCEEEECCCCCCCCHHHHHHHHCCCCEEECCCCCCHHCCCC
Q ss_conf 999986299996884999998----989999998-122994999469999996699999990998998188882000104
Q 002660 372 LKLIDKYDLYGQVAYPKHHKQ----SDVPEIYRL-AAKTKGVFINPAFIEPFGLTLIEAAAHGLPIVATKNGGPVDIHRV 446 (895)
Q Consensus 372 ~~~~~~~~l~~~v~~~g~~~~----~el~~ly~~-A~~~~dv~v~ps~~Eg~gl~~~Ea~a~G~PVIas~~gg~~eii~~ 446 (895)
..++.++++.++|.|+|+++. +++..+|+. + |++|+||..|+||++++||||||+|||+++.||..|++.+
T Consensus 630 ~~li~~lgL~~~V~flG~~~~~v~~~eL~~~~~~aa----DvfV~PS~~EgfglvllEAMA~G~PVIasd~GG~~EiV~d 705 (816)
T 3s28_A 630 YDLIEEYKLNGQFRWISSQMDRVRNGELYRYICDTK----GAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVH 705 (816)
T ss_dssp HHHHHHTTCBBBEEEECCCCCHHHHHHHHHHHHHTT----CEEEECCSCBSSCHHHHHHHHTTCCEEEESSBTHHHHCCB
T ss_pred HHHHHHCCCCCCEEECCCCCCCCCHHHHHHHHHHCC----EEEEECCCCCCCCHHHHHHHHCCCCEEEECCCCHHHHHCC
T ss_conf 999997499872898167556689999999999569----0999888755764999999980999999689876999706
Q ss_pred CCCEEEECCCCHHHHHHHHHHHH----HCHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHCC
Q ss_conf 98718919999999999999997----39999999999998885-4099899999999999811
Q 002660 447 LDNGLLVDPHDQQSVADALLKLV----ADKQLWARCRQNGLKNI-HLFSWPEHCKTYLSRIAGC 505 (895)
Q Consensus 447 ~~~g~lv~p~d~~~la~ai~~ll----~~~~~~~~~~~~~~~~~-~~~s~~~~a~~~~~~l~~~ 505 (895)
+.+|++++|.|+++++++|.+++ .+++.++++++++++.+ ++|||+.++++++++|+..
T Consensus 706 g~~Gllv~p~D~e~LA~aI~~lL~~Ll~d~~~~~~m~~~ar~~a~~~fSwe~~a~~ll~lY~~~ 769 (816)
T 3s28_A 706 GKSGFHIDPYHGDQAADTLADFFTKCKEDPSHWDEISKGGLQRIEEKYTWQIYSQRLLTLTGVY 769 (816)
T ss_dssp TTTBEEECTTSHHHHHHHHHHHHHHHHHCTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHH
T ss_pred CCCEEEECCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_conf 9818996899999999999999987526999999999999999998689999999999999997
No 2
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Probab=1.00 E-value=1 Score=385.23 Aligned_cols=441 Identities=31% Similarity=0.504 Sum_probs=318.5
Q ss_pred EEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 06753320444456765688889998415799999999805999117999526855999998879753115899998634
Q 002660 4 NNYFACSIHGLIRGENMELGRDSDTGGQVKYVVELARALGSMPGVYRVDLLTRQVSAPDVDWSYGEPTEMLTPRNSDDFM 83 (895)
Q Consensus 4 m~I~~is~~~~~~~~~~~~~~~~~~GG~~~~v~~La~~L~~~G~~h~V~vvt~~~~~~~~~~~y~~~~e~~~~~~~~~~~ 83 (895)
|||++++.+++....++.+...+..||+++++.+|+++|+++| |+|+|+|.....+.. +.|....+.+
T Consensus 8 MkIl~i~~~~~P~~~~l~v~~~~~~GG~~~~~~~la~~L~~~G--~~V~v~~~~~~~~~~-~~~~~~~~~~--------- 75 (499)
T 2r60_A 8 KHVAFLNPQGNFDPADSYWTEHPDFGGQLVYVKEVSLALAEMG--VQVDIITRRIKDENW-PEFSGEIDYY--------- 75 (499)
T ss_dssp CEEEEECCSSCCCTTCTTTTSBTTBSHHHHHHHHHHHHHHHTT--CEEEEEEECCCBTTB-GGGCCSEEEC---------
T ss_pred CEEEEEECCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHCC--CEEEEEECCCCCCCC-CCHHHHHHHC---------
T ss_conf 2499996577744344234788887994334999999998559--848999578872336-5113567750---------
Q ss_pred CCCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCHHHHHHHH
Q ss_conf 45799997099946899987663222589984788999999999863320011389998878299923566112899985
Q 002660 84 DDMGESSGAYIIRIPFGPKDKYIAKELLWPHIPEFVDGALNHIIRMSNVLGEQIGGGKPVWPVAIHGHYADAGDSAALLS 163 (895)
Q Consensus 84 ~~~~~~~gv~i~~i~~~~~~~~~~~~~~~~~l~~f~~~~~~~~~~~~~~l~~~~~~~~~~~pDiVh~h~~~~~~~~~~~~ 163 (895)
....|+++++++..+. .+..+..+|.++..+...+.+.+++. ..+||+||+|.+..++++..++
T Consensus 76 ---~~~~gv~v~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~l~~~------------~~~~Divh~~~~~~~~~~~~~~ 139 (499)
T 2r60_A 76 ---QETNKVRIVRIPFGGD-KFLPKEELWPYLHEYVNKIINFYREE------------GKFPQVVTTHYGDGGLAGVLLK 139 (499)
T ss_dssp ---TTCSSEEEEEECCSCS-SCCCGGGCGGGHHHHHHHHHHHHHHH------------TCCCSEEEEEHHHHHHHHHHHH
T ss_pred ---CCCCCEEEEEECCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHC------------CCCCCEEEECCCCCHHHHHHHH
T ss_conf ---6789817998257776-77688999998999999999999853------------8998889975786207999988
Q ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHH--HCCC----
Q ss_conf 0179989998089824149999997101588887654366778999841024689992796999999965--1499----
Q 002660 164 GALNVPMLFTGHSLGRDKLEQLLKQARLSRDEINATYKIMRRIEAEELSLDASEIVITSTRQEIEEQWRL--YDGF---- 237 (895)
Q Consensus 164 ~~~~ip~v~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~ad~Vi~~s~~~~~~~~~~--~~~~---- 237 (895)
+..++|+|+|.|+............+. ....+...+++..+...++..++.+|.|+++|+...+.+... ++..
T Consensus 140 ~~~~~p~v~~~H~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~g~~~~~~ 218 (499)
T 2r60_A 140 NIKGLPFTFTGHSLGAQKMEKLNVNTS-NFKEMDERFKFHRRIIAERLTMSYADKIIVSTSQERFGQYSHDLYRGAVNVE 218 (499)
T ss_dssp HHHCCCEEEECSSCHHHHHHTTCCCST-TSHHHHHHHCHHHHHHHHHHHHHHCSEEEESSHHHHHHTTTSGGGTTTCCTT
T ss_pred HHCCCCEEEECCCCCCCCCHHHCCCCC-CCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHCCCCCCCCC
T ss_conf 735996899806840011134414787-7612455678889999999998468999988889999998641246422346
Q ss_pred CHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHC-----CCCC
Q ss_conf 95789999996721433358899988991999989997789999998778999999999994168864213-----8999
Q 002660 238 DPVLERKLRARIKRNVSCYGKFMPRMAIIPPGMEFHHIVPQDGDMDGETEGNEDNPASPDPPIWSEIMRFF-----TNPR 312 (895)
Q Consensus 238 ~~~~~~~l~~~~~~gv~~~g~~~~~v~vip~Gid~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~ 312 (895)
.+ .++.+||||+|.+.|.+... .......+.+++ ..++
T Consensus 219 ~~---------------------~ki~vi~ngvd~~~~~~~~~----------------~~~~~~~r~~~~~~~~~~~~~ 261 (499)
T 2r60_A 219 DD---------------------DKFSVIPPGVNTRVFDGEYG----------------DKIKAKITKYLERDLGSERME 261 (499)
T ss_dssp CG---------------------GGEEECCCCBCTTTSSSCCC----------------HHHHHHHHHHHHHHSCGGGTT
T ss_pred CC---------------------CCEEEECCCCCHHHCCCCCH----------------HHHHHHHHHHHCCCCCCCCCC
T ss_conf 78---------------------87699879958665686410----------------356789998836433456888
Q ss_pred CCEEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEECCCCC----CCCCCCHHHHHHHHHHHHHHCCCCCCEEECC
Q ss_conf 749999727899899899999997512546997199998149996----4222002899999999998629999688499
Q 002660 313 KPVILALARPDPKKNITTLVKAFGECRPLRELANLTLIMGNRDGI----DEMSSTSASVLLSVLKLIDKYDLYGQVAYPK 388 (895)
Q Consensus 313 ~~~il~vgrl~~~Kgi~~ll~A~~~l~~~~~~~~l~livG~~~~~----~~~~~~~~~~~~~i~~~~~~~~l~~~v~~~g 388 (895)
+++|+++||+.+.||++.+++|+..+.+..+.....+++|+.+.. ..+.....++..++..++.++++.++|.|+|
T Consensus 262 ~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~~~~l~i~G~~~~~~~~y~~l~~~~~~y~~~l~~~~~~~~l~~~V~~~G 341 (499)
T 2r60_A 262 LPAIIASSRLDQKKNHYGLVEAYVQNKELQDKANLVLTLRGIENPFEDYSRAGQEEKEILGKIIELIDNNDCRGKVSMFP 341 (499)
T ss_dssp SCEEEECSCCCGGGCHHHHHHHHHTCHHHHHHCEEEEEESSCSBTTTBCTTSCHHHHHHHHHHHHHHHHTTCBTTEEEEE
T ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECC
T ss_conf 76899960685015889999999999873888659999878887532211113201479999999998649986099878
Q ss_pred CCCCCCHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHCCCCEEECCCCCCHHCCCCCCCEEEECCCCHHHHHHHHHHH
Q ss_conf 99989899999981229949994699999966999999909989981888820001049871891999999999999999
Q 002660 389 HHKQSDVPEIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPIVATKNGGPVDIHRVLDNGLLVDPHDQQSVADALLKL 468 (895)
Q Consensus 389 ~~~~~el~~ly~~A~~~~dv~v~ps~~Eg~gl~~~Ea~a~G~PVIas~~gg~~eii~~~~~g~lv~p~d~~~la~ai~~l 468 (895)
+++.+++..+|+.|..+.|++|+||..||||++++|||+||+|||+++.||..|++.++.+|+++++.|+++++++|.++
T Consensus 342 ~v~~~~~~~~~~~a~~~~dv~v~pS~~Eg~~~~~lEAma~G~PvI~s~~~g~~e~v~~~~~g~l~~~~d~~~la~~i~~l 421 (499)
T 2r60_A 342 LNSQQELAGCYAYLASKGSVFALTSFYEPFGLAPVEAMASGLPAVVTRNGGPAEILDGGKYGVLVDPEDPEDIARGLLKA 421 (499)
T ss_dssp CCSHHHHHHHHHHHHHTTCEEEECCSCBCCCSHHHHHHHTTCCEEEESSBHHHHHTGGGTSSEEECTTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHCCCCCCEEEECCCCCCCCCHHHHHHHCCCCEEEECCCCHHHHHCCCCEEEEECCCCHHHHHHHHHHH
T ss_conf 89989999999955767988997864589796899999769988981688778873478607995899999999999999
Q ss_pred HHCHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHCCCCCCC
Q ss_conf 7399999999999988854-09989999999999981169999
Q 002660 469 VADKQLWARCRQNGLKNIH-LFSWPEHCKTYLSRIAGCKPRHP 510 (895)
Q Consensus 469 l~~~~~~~~~~~~~~~~~~-~~s~~~~a~~~~~~l~~~~~~~~ 510 (895)
+++++.++++++++++.++ +|||+.+++++.++|+++.....
T Consensus 422 l~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~y~~~~~~~~ 464 (499)
T 2r60_A 422 FESEETWSAYQEKGKQRVEERYTWQETARGYLEVIQEIADRKD 464 (499)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHSBHHHHHHHHHHHHHHHHHC--
T ss_pred HHCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 8699999999999999998757999999999999999873213
No 3
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=1.00 E-value=1 Score=359.33 Aligned_cols=428 Identities=21% Similarity=0.257 Sum_probs=303.5
Q ss_pred CEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 10675332044445676568888999841579999999980599911799952685599999887975311589999863
Q 002660 3 FNNYFACSIHGLIRGENMELGRDSDTGGQVKYVVELARALGSMPGVYRVDLLTRQVSAPDVDWSYGEPTEMLTPRNSDDF 82 (895)
Q Consensus 3 ~m~I~~is~~~~~~~~~~~~~~~~~~GG~~~~v~~La~~L~~~G~~h~V~vvt~~~~~~~~~~~y~~~~e~~~~~~~~~~ 82 (895)
.|||++++.+.. ++..||.++++.+|+++|+++| |+|+|+|+...... ...-...+.+.. ....
T Consensus 2 ~MkIl~v~~~~~----------p~~~gG~~~~~~~la~~L~~~G--~~V~v~~~~~~~~~--~~~~~~~~~~~~--~~~~ 65 (439)
T 3fro_A 2 HMKVLLLGFEFL----------PVKVGGLAEALTAISEALASLG--HEVLVFTPSHGRFQ--GEEIGKIRVFGE--EVQV 65 (439)
T ss_dssp CCEEEEECSCCT----------TSCSSSHHHHHHHHHHHHHHTT--CEEEEEEECTTCSC--CEEEEEEEETTE--EEEE
T ss_pred CEEEEEEECCCC----------CCCCCCHHHHHHHHHHHHHHCC--CEEEEEECCCCCCH--HHHHCCCCCCCC--CCCE
T ss_conf 528999950217----------7666889999999999999779--85999836778823--655246301476--5310
Q ss_pred CCCCCCCCCEEEEECCCCCCCCCCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCHHHHHH
Q ss_conf 4457999970999468999876632225899-847889999999998633200113899988782999235661128999
Q 002660 83 MDDMGESSGAYIIRIPFGPKDKYIAKELLWP-HIPEFVDGALNHIIRMSNVLGEQIGGGKPVWPVAIHGHYADAGDSAAL 161 (895)
Q Consensus 83 ~~~~~~~~gv~i~~i~~~~~~~~~~~~~~~~-~l~~f~~~~~~~~~~~~~~l~~~~~~~~~~~pDiVh~h~~~~~~~~~~ 161 (895)
.......+|+.+++++. + ++.+..++. +...+..++..+.......+...+. ...+||+||+|.+..++.+..
T Consensus 66 ~~~~~~~~gv~v~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~Dii~~~~~~~~~~~~~ 139 (439)
T 3fro_A 66 KVSYEERGNLRIYRIGG-G---LLDSEDVYGPGWDGLIRKAVTFGRASVLLLNDLLR--EEPLPDVVHFHDWHTVFAGAL 139 (439)
T ss_dssp EEEEEEETTEEEEEEES-G---GGGCSSTTCSHHHHHHHHHHHHHHHHHHHHHHHTT--TSCCCSEEEEESGGGHHHHHH
T ss_pred EEEECCCCCCEEEEECC-H---HCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHC--CCCCCEEEEECCHHHHHHHHH
T ss_conf 24312578840899353-2---20521246677630023257899999999999744--479981999464034345898
Q ss_pred HHCCCCCCEEEEECCCCHHHHHHH-HHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHCCCCHH
Q ss_conf 850179989998089824149999-9971015888876543667789998410246899927969999999651499957
Q 002660 162 LSGALNVPMLFTGHSLGRDKLEQL-LKQARLSRDEINATYKIMRRIEAEELSLDASEIVITSTRQEIEEQWRLYDGFDPV 240 (895)
Q Consensus 162 ~~~~~~ip~v~t~H~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~ad~Vi~~s~~~~~~~~~~~~~~~~~ 240 (895)
+++..++|+|++.|+......... .....+.. .........++..++.+|.++++|+...+..++.+..
T Consensus 140 ~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~ad~ii~~S~~~~~~~~~~~~~---- 209 (439)
T 3fro_A 140 IKKYFKIPAVFTIHRLNKSKLPAFYFHEAGLSE------LAPYPDIDPEHTGGYIADIVTTVSRGYLIDEWGFFRN---- 209 (439)
T ss_dssp HHHHHCCCEEEEESCCCCCCEEHHHHHHTTCGG------GCCSSEECHHHHHHHHCSEEEESCHHHHHHTHHHHGG----
T ss_pred HHHCCCCCEEEEECCCCCCCCCHHHHCCCCCCC------CCCCCEEEHHHHHHHHCCEEEECCHHHHHHHHHHHHH----
T ss_conf 865269978999653444568567747455100------3566632076665543458872689899998605650----
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEEEE
Q ss_conf 89999996721433358899988991999989997789999998778999999999994168864213899974999972
Q 002660 241 LERKLRARIKRNVSCYGKFMPRMAIIPPGMEFHHIVPQDGDMDGETEGNEDNPASPDPPIWSEIMRFFTNPRKPVILALA 320 (895)
Q Consensus 241 ~~~~l~~~~~~gv~~~g~~~~~v~vip~Gid~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~vg 320 (895)
+..++.+||||+|.+.|.+..... .........+++++.+++ ++|+++|
T Consensus 210 ------------------~~~~i~vi~ngvd~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~-~~i~~~G 258 (439)
T 3fro_A 210 ------------------FEGKITYVFNGIDCSFWNESYLTG------------SRDERKKSLLSKFGMDEG-VTFMFIG 258 (439)
T ss_dssp ------------------GTTSEEECCCCCCTTTSCGGGSCS------------CHHHHHHHHHHHHTCCSC-EEEEEEC
T ss_pred ------------------CCCCEEECCCCCCCHHCCCCCCCC------------HHHHHHHHHHHHCCCCCC-CEEEEEC
T ss_conf ------------------477345347888804308432211------------045669999997399998-4799973
Q ss_pred CCC-CCCCHHHHHHHHHHCCCCCCCCCEEE-EEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCHHHH
Q ss_conf 789-98998999999975125469971999-9814999642220028999999999986299996884999998989999
Q 002660 321 RPD-PKKNITTLVKAFGECRPLRELANLTL-IMGNRDGIDEMSSTSASVLLSVLKLIDKYDLYGQVAYPKHHKQSDVPEI 398 (895)
Q Consensus 321 rl~-~~Kgi~~ll~A~~~l~~~~~~~~l~l-ivG~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~v~~~g~~~~~el~~l 398 (895)
|+. +.||++.+++|+..+.+....+++.+ ++|+++ ..+...+..++.+++ +.+.|.|+++.+++..+
T Consensus 259 ~~~~~~Kg~~~li~a~~~l~~~~~~~~~~l~i~G~g~---------~~~~~~l~~~~~~~~--~~~~~~g~~~~~~~~~~ 327 (439)
T 3fro_A 259 RFDRGQKGVDVLLKAIEILSSKKEFQEMRFIIIGKGD---------PELEGWARSLEEKHG--NVKVITEMLSREFVREL 327 (439)
T ss_dssp CSSCTTBCHHHHHHHHHHHHTSGGGGGEEEEEECCCC---------HHHHHHHHHHHHHCT--TEEEECSCCCHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCC---------HHHHHHHHHHHHHCC--CEEEECCCCCHHHHHHH
T ss_conf 3353436699999999999854667871899980797---------267789999875069--89997287998899999
Q ss_pred HHHHHCCCCEEEECCCCCCCCHHHHHHHHCCCCEEECCCCCCHHCCCCCCCEEEECCCCHHHHHHHHHHHHH-CHHHHHH
Q ss_conf 998122994999469999996699999990998998188882000104987189199999999999999973-9999999
Q 002660 399 YRLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPIVATKNGGPVDIHRVLDNGLLVDPHDQQSVADALLKLVA-DKQLWAR 477 (895)
Q Consensus 399 y~~A~~~~dv~v~ps~~Eg~gl~~~Ea~a~G~PVIas~~gg~~eii~~~~~g~lv~p~d~~~la~ai~~ll~-~~~~~~~ 477 (895)
|+.| |++|+||..||||++++|||+||+|||+++.|+..|++.++ +|+++++.|+++++++|.++++ +++.+++
T Consensus 328 ~~~a----dv~v~ps~~e~~~~~~~EAma~G~Pvi~s~~~~~~e~~~~~-~g~~~~~~d~~~la~~i~~ll~~~~~~~~~ 402 (439)
T 3fro_A 328 YGSV----DFVIIPSYFEPFGLVALEAMCLGAIPIASAVGGLRDIITNE-TGILVKAGDPGELANAILKALELSRSDLSK 402 (439)
T ss_dssp HTTC----SEEEECBSCCSSCHHHHHHHHTTCEEEEESSTHHHHHCCTT-TCEEECTTCHHHHHHHHHHHHHHTTTTTHH
T ss_pred HHHC----CEEEECCCCCCCCHHHHHHHHCCCCEEECCCCCCCEEEECC-CEEEECCCCHHHHHHHHHHHHHCCHHHHHH
T ss_conf 9977----99995898788618999999779976973788743168758-448968899899999999998319999999
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 99999888540998999999999998116999
Q 002660 478 CRQNGLKNIHLFSWPEHCKTYLSRIAGCKPRH 509 (895)
Q Consensus 478 ~~~~~~~~~~~~s~~~~a~~~~~~l~~~~~~~ 509 (895)
+++++++.+++|||+.++++|.++|++++++.
T Consensus 403 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 434 (439)
T 3fro_A 403 FRENCKKRAMSFSWEKSAERYVKAYTGSIDRA 434 (439)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHHTCSCCB
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
T ss_conf 99999998764729999999999999999754
No 4
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=1.00 E-value=1 Score=357.16 Aligned_cols=407 Identities=23% Similarity=0.329 Sum_probs=303.6
Q ss_pred CCCEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 93106753320444456765688889998415799999999805999117999526855999998879753115899998
Q 002660 1 MIFNNYFACSIHGLIRGENMELGRDSDTGGQVKYVVELARALGSMPGVYRVDLLTRQVSAPDVDWSYGEPTEMLTPRNSD 80 (895)
Q Consensus 1 ~~~m~I~~is~~~~~~~~~~~~~~~~~~GG~~~~v~~La~~L~~~G~~h~V~vvt~~~~~~~~~~~y~~~~e~~~~~~~~ 80 (895)
+.||||++++.++. +.........||+++++.+|+++|+++| |+|+|+|....... . ..+..
T Consensus 18 ~~mmkIl~i~~~~~----p~~~~~~~~~GG~~~~~~~la~~L~~~G--~~V~v~~~~~~~~~-----~-~~~~~------ 79 (438)
T 3c48_A 18 GSHMRVAMISMHTS----PLQQPGTGDSGGMNVYILSTATELAKQG--IEVDIYTRATRPSQ-----G-EIVRV------ 79 (438)
T ss_dssp -CCCEEEEECTTSC----TTCC-------CHHHHHHHHHHHHHHTT--CEEEEEEECCCGGG-----C-SEEEE------
T ss_pred CCHHEEEEEEEECC----CCCCCCCCCCCCHHHHHHHHHHHHHHCC--CEEEEEECCCCCCC-----C-CCCCC------
T ss_conf 00203345775325----6346787887879999999999999669--97999954788777-----5-40025------
Q ss_pred CCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHH-HHHHHHHHHCCCCCCCCCCCCEEEECCCCCHHHH
Q ss_conf 634457999970999468999876632225899847889999999-9986332001138999887829992356611289
Q 002660 81 DFMDDMGESSGAYIIRIPFGPKDKYIAKELLWPHIPEFVDGALNH-IIRMSNVLGEQIGGGKPVWPVAIHGHYADAGDSA 159 (895)
Q Consensus 81 ~~~~~~~~~~gv~i~~i~~~~~~~~~~~~~~~~~l~~f~~~~~~~-~~~~~~~l~~~~~~~~~~~pDiVh~h~~~~~~~~ 159 (895)
.+++++++++..+. ..+.+..++..+..|...+... ++. ..+||+||+|.+..+.++
T Consensus 80 --------~~~v~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~Div~~~~~~~~~~~ 137 (438)
T 3c48_A 80 --------AENLRVINIAAGPY-EGLSKEELPTQLAAFTGGMLSFTRRE-------------KVTYDLIHSHYWLSGQVG 137 (438)
T ss_dssp --------ETTEEEEEECCSCS-SSCCGGGGGGGHHHHHHHHHHHHHHH-------------TCCCSEEEEEHHHHHHHH
T ss_pred --------CCCEEEEEECCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHC-------------CCCCCEEEECCCCHHHHH
T ss_conf --------68748999247875-43236677899999999999999841-------------689998994775578999
Q ss_pred HHHHCCCCCCEEEEECCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHCCCCH
Q ss_conf 99850179989998089824149999997101588887654366778999841024689992796999999965149995
Q 002660 160 ALLSGALNVPMLFTGHSLGRDKLEQLLKQARLSRDEINATYKIMRRIEAEELSLDASEIVITSTRQEIEEQWRLYDGFDP 239 (895)
Q Consensus 160 ~~~~~~~~ip~v~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~ad~Vi~~s~~~~~~~~~~~~~~~~ 239 (895)
..+++..++|+|++.|+.+......+.. +. . .....+...++..++.+|.|+++|+...+.+...++. ..
T Consensus 138 ~~~~~~~~~p~v~~~h~~~~~~~~~~~~-~~-~-------~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~g~-~~ 207 (438)
T 3c48_A 138 WLLRDLWRIPLIHTAHTLAAVKNSYRDD-SD-T-------PESEARRICEQQLVDNADVLAVNTQEEMQDLMHHYDA-DP 207 (438)
T ss_dssp HHHHHHHTCCEEEECSSCHHHHSCC-----C-C-------HHHHHHHHHHHHHHHHCSEEEESSHHHHHHHHHHHCC-CG
T ss_pred HHHHHHCCCCEEEEECCCCCCCCCCCCC-CC-C-------CCHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHCC-CH
T ss_conf 9999974999899942774011111002-67-7-------3157899999999840899998479999999998589-82
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEEE
Q ss_conf 78999999672143335889998899199998999778999999877899999999999416886421389997499997
Q 002660 240 VLERKLRARIKRNVSCYGKFMPRMAIIPPGMEFHHIVPQDGDMDGETEGNEDNPASPDPPIWSEIMRFFTNPRKPVILAL 319 (895)
Q Consensus 240 ~~~~~l~~~~~~gv~~~g~~~~~v~vip~Gid~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v 319 (895)
.++.+||||+|.+.|.+... ......+.+++..+++++|+++
T Consensus 208 ---------------------~k~~vi~ngvd~~~~~~~~~-----------------~~~~~~r~~~~~~~~~~~i~~~ 249 (438)
T 3c48_A 208 ---------------------DRISVVSPGADVELYSPGND-----------------RATERSRRELGIPLHTKVVAFV 249 (438)
T ss_dssp ---------------------GGEEECCCCCCTTTSCCC---------------------CHHHHHHTTCCSSSEEEEEE
T ss_pred ---------------------HHEEEECCCCCCCCCCCCCC-----------------CHHHHHHHHCCCCCCCCEEEEE
T ss_conf ---------------------02688269766110478662-----------------0245668860899898489997
Q ss_pred ECCCCCCCHHHHHHHHHHCCCCCCCCCEEE-EEEC----CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCC
Q ss_conf 278998998999999975125469971999-9814----99964222002899999999998629999688499999898
Q 002660 320 ARPDPKKNITTLVKAFGECRPLRELANLTL-IMGN----RDGIDEMSSTSASVLLSVLKLIDKYDLYGQVAYPKHHKQSD 394 (895)
Q Consensus 320 grl~~~Kgi~~ll~A~~~l~~~~~~~~l~l-ivG~----~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~v~~~g~~~~~e 394 (895)
||+.+.||++.+++|+..+.+..+..++.+ ++|+ ++. ..++..++.++++.++|.|.|+++.++
T Consensus 250 G~~~~~Kg~~~li~a~~~l~~~~p~~~~~l~i~G~~~~~g~~-----------~~~l~~~~~~~~l~~~v~~~g~~~~~~ 318 (438)
T 3c48_A 250 GRLQPFKGPQVLIKAVAALFDRDPDRNLRVIICGGPSGPNAT-----------PDTYRHMAEELGVEKRIRFLDPRPPSE 318 (438)
T ss_dssp SCBSGGGCHHHHHHHHHHHHHHCTTCSEEEEEECCBC-----------------CHHHHHHHHTTCTTTEEEECCCCHHH
T ss_pred EEECCCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCH-----------HHHHHHHHHHCCCCCCEEECCCCCHHH
T ss_conf 431566798999999999996397766699998188877727-----------899999999719878689858898588
Q ss_pred HHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHCCCCEEECCCCCCHHCCCCCCCEEEECCCCHHHHHHHHHHHHHCHHH
Q ss_conf 99999981229949994699999966999999909989981888820001049871891999999999999999739999
Q 002660 395 VPEIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPIVATKNGGPVDIHRVLDNGLLVDPHDQQSVADALLKLVADKQL 474 (895)
Q Consensus 395 l~~ly~~A~~~~dv~v~ps~~Eg~gl~~~Ea~a~G~PVIas~~gg~~eii~~~~~g~lv~p~d~~~la~ai~~ll~~~~~ 474 (895)
+..+|+.| |++|+||..|+||++++|||+||+|||+++.|+..|++.++.+|+++++.|+++++++|.+++++++.
T Consensus 319 ~~~~~~~a----dv~v~ps~~e~~~~~~~Eama~G~PvI~~~~~~~~e~i~~~~~g~~~~~~d~~~la~~i~~l~~~~~~ 394 (438)
T 3c48_A 319 LVAVYRAA----DIVAVPSFNESFGLVAMEAQASGTPVIAARVGGLPIAVAEGETGLLVDGHSPHAWADALATLLDDDET 394 (438)
T ss_dssp HHHHHHHC----SEEEECCSCCSSCHHHHHHHHTTCCEEEESCTTHHHHSCBTTTEEEESSCCHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHC----CEEEECCCCCCCCHHHHHHHHCCCCEEECCCCCHHHHHHCCCCEEECCCCCHHHHHHHHHHHHCCHHH
T ss_conf 99999858----99998740268755999998769988962798725775079727987999999999999999759899
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCC
Q ss_conf 999999998885409989999999999981169999
Q 002660 475 WARCRQNGLKNIHLFSWPEHCKTYLSRIAGCKPRHP 510 (895)
Q Consensus 475 ~~~~~~~~~~~~~~~s~~~~a~~~~~~l~~~~~~~~ 510 (895)
+.++++++++.++.|||+.+++++.++|++++.+..
T Consensus 395 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 430 (438)
T 3c48_A 395 RIRMGEDAVEHARTFSWAATAAQLSSLYNDAIANEN 430 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 999999999998857999999999999999863136
No 5
>3vue_A GBSS-I, granule-bound starch synthase 1, chloroplastic/amyloplastic; rossmann fold, glycosyltransferase, transferase; 2.70A {Oryza sativa japonica group} PDB: 3vuf_A*
Probab=1.00 E-value=1 Score=340.10 Aligned_cols=454 Identities=16% Similarity=0.102 Sum_probs=274.9
Q ss_pred CEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCCC-CCCCCCCCC-
Q ss_conf 106753320444456765688889998415799999999805999117999526855999998879753-115899998-
Q 002660 3 FNNYFACSIHGLIRGENMELGRDSDTGGQVKYVVELARALGSMPGVYRVDLLTRQVSAPDVDWSYGEPT-EMLTPRNSD- 80 (895)
Q Consensus 3 ~m~I~~is~~~~~~~~~~~~~~~~~~GG~~~~v~~La~~L~~~G~~h~V~vvt~~~~~~~~~~~y~~~~-e~~~~~~~~- 80 (895)
.|||+|+|.-.. + -.-+||...++..|+++|+++| |+|+|+++.+.. ......... ..+.-....
T Consensus 9 ~MkIl~vs~E~~--------P-~~K~GGLadvv~~L~~aL~~~G--~~V~Vi~P~Y~~--~~~~~~~~~~~~~~~~~~~~ 75 (536)
T 3vue_A 9 HMNVVFVGAEMA--------P-WSKTGGLGDVLGGLPPAMAANG--HRVMVISPRYDQ--YKDAWDTSVVAEIKVADRYE 75 (536)
T ss_dssp CCEEEEECSCBT--------T-TBCSSHHHHHHHHHHHHHHTTT--CEEEEEEECCSC--CTTCEEEEEEEEEEETTEEE
T ss_pred CCEEEEEEEECC--------C-HHCCCCHHHHHHHHHHHHHHCC--CEEEEEECCCHH--HHHHCCCCEEEEEEECCCEE
T ss_conf 738999987243--------1-2126769999999999999769--969999048502--22422651689998368337
Q ss_pred CCCCCCCCCCCEEEEECCCCCCCCCCCC------------CCCCCCHHHHHHHH--HHHHHHHHHHHHCC---CCCCCCC
Q ss_conf 6344579999709994689998766322------------25899847889999--99999863320011---3899988
Q 002660 81 DFMDDMGESSGAYIIRIPFGPKDKYIAK------------ELLWPHIPEFVDGA--LNHIIRMSNVLGEQ---IGGGKPV 143 (895)
Q Consensus 81 ~~~~~~~~~~gv~i~~i~~~~~~~~~~~------------~~~~~~l~~f~~~~--~~~~~~~~~~l~~~---~~~~~~~ 143 (895)
...-......|+.++.+... .++.+ ....++.+...... .+........+... .......
T Consensus 76 ~~~~~~~~~~gv~~y~id~~---~~~~r~~~~~~~~~Y~~~~~~~~~d~~~rf~~f~~a~l~~~~~l~~~~~~~~~~~~~ 152 (536)
T 3vue_A 76 RVRFFHCYKRGVDRVFIDHP---SFLEKVWGKTGEKIYGPDTGVDYKDNQMRFSLLCQAALEAPRILNLNNNPYFKGTYG 152 (536)
T ss_dssp EEEEEECEETTEEEEEEECT---TTTCC------------------CHHHHHHHHHHHHHHHHHHHCCCCCCTTCCSCCC
T ss_pred EEEEEEEEECCCEEEEECCH---HHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCC
T ss_conf 89999999789559996475---541233466778666887567664179999999999999999730265301101479
Q ss_pred CCCEEEECCCCCHHHHHHHHCC-------CCCCEEEEECCCCHHHHH---HHHHHHHCCHHHHHH-------HHHHHHHH
Q ss_conf 7829992356611289998501-------799899980898241499---999971015888876-------54366778
Q 002660 144 WPVAIHGHYADAGDSAALLSGA-------LNVPMLFTGHSLGRDKLE---QLLKQARLSRDEINA-------TYKIMRRI 206 (895)
Q Consensus 144 ~pDiVh~h~~~~~~~~~~~~~~-------~~ip~v~t~H~~~~~~~~---~~~~~~~~~~~~~~~-------~~~~~~~~ 206 (895)
.+||+|+|+|.+++++.++... .++|+|+|+|++...... .+...+......... .......+
T Consensus 153 ~ddIiH~hDW~t~l~~~~l~~~~~~~~~~~~~~~V~TiHnl~~qg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (536)
T 3vue_A 153 EDVVFVCNDWHTGPLASYLKNNYQPNGIYRNAKVAFCIHNISYQGRFAFEDYPELNLSERFRSSFDFIDGYDTPVEGRKI 232 (536)
T ss_dssp SCEEEEEESGGGSTHHHHHHHHTTTTTSSTTCEEEEEESCTTCCCEEEGGGGGGGCCCGGGHHHHEEEETTTSTTCEEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHCCCCHHHCCHHHHHHCCCCCCCCCCH
T ss_conf 98799977604899999999864023320256345421574224555533364418965640103333114641003304
Q ss_pred HHHHHHHCCCCEEEECCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCC-CCCCCCEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 99984102468999279699999996514999578999999672143335-88999889919999899977899999987
Q 002660 207 EAEELSLDASEIVITSTRQEIEEQWRLYDGFDPVLERKLRARIKRNVSCY-GKFMPRMAIIPPGMEFHHIVPQDGDMDGE 285 (895)
Q Consensus 207 ~~e~~~l~~ad~Vi~~s~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~~-g~~~~~v~vip~Gid~~~f~~~~~~~~~~ 285 (895)
..++..+..||.|+++|+..++++...+.. |.... .....++.+||||||.+.|.|.....-..
T Consensus 233 n~~k~~i~~ad~v~tVS~~~a~ei~~~~~~---------------g~~l~~~~~~~~i~~I~NGiD~~~~~p~~d~~~~~ 297 (536)
T 3vue_A 233 NWMKAGILEADRVLTVSPYYAEELISGIAR---------------GCELDNIMRLTGITGIVNGMDVSEWDPSKDKYITA 297 (536)
T ss_dssp EHHHHHHHHCSEEEESCHHHHHHHHTTCCC---------------CSSSCCCSCCCSCEECCCCCCTTTSCTTTCSSSSC
T ss_pred HHHHHHHHHCCEEEECCHHHHHHHHCCCCC---------------CCCCCCCCCCCCEEEEECCCCHHHCCCCCCCCCCC
T ss_conf 399999985367787687885343126344---------------52200125457818997996642148877621001
Q ss_pred CCCCCCCCCCCC-CCHHHHHHHHCC--CCCCCEEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCC
Q ss_conf 789999999999-941688642138--99974999972789989989999999751254699719999814999642220
Q 002660 286 TEGNEDNPASPD-PPIWSEIMRFFT--NPRKPVILALARPDPKKNITTLVKAFGECRPLRELANLTLIMGNRDGIDEMSS 362 (895)
Q Consensus 286 ~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~il~vgrl~~~Kgi~~ll~A~~~l~~~~~~~~l~livG~~~~~~~~~~ 362 (895)
...... ..... ........+++. .++.++|+++||+.++||++.+++|+.++. ...+++ +++|.|+.
T Consensus 298 ~~~~~~-~~~~K~~~k~~l~~~~gl~~d~~~p~i~~vgRl~~~Kg~~~li~a~~~l~--~~~~~l-~l~G~G~~------ 367 (536)
T 3vue_A 298 KYDATT-AIEAKALNKEALQAEAGLPVDRKIPLIAFIGRLEEQKGPDVMAAAIPELM--QEDVQI-VLLGTGKK------ 367 (536)
T ss_dssp CCCTTT-HHHHHHHHHHHHHHHTTSCCCTTSCEEEEECCBSGGGCHHHHHHHHHHHT--TSSCEE-EEECCBCH------
T ss_pred CCCHHH-HHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHH--HHCCEE-EEEECCCC------
T ss_conf 444345-55656777999998619987999758999965302378478999999768--549859-99954672------
Q ss_pred CHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHCCCCEEECCCCCCHH
Q ss_conf 02899999999998629999688499999898999999812299499946999999669999999099899818888200
Q 002660 363 TSASVLLSVLKLIDKYDLYGQVAYPKHHKQSDVPEIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPIVATKNGGPVD 442 (895)
Q Consensus 363 ~~~~~~~~i~~~~~~~~l~~~v~~~g~~~~~el~~ly~~A~~~~dv~v~ps~~Eg~gl~~~Ea~a~G~PVIas~~gg~~e 442 (895)
.....+......+ ..++.+.+..+.+++..+|+.| |++|+||++||||++++|||+||+|||+++.||..|
T Consensus 368 ---~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~a----D~~v~PS~~E~fgl~~lEAma~G~PvI~s~~gG~~e 438 (536)
T 3vue_A 368 ---KFEKLLKSMEEKY--PGKVRAVVKFNAPLAHLIMAGA----DVLAVPSRFEPCGLIQLQGMRYGTPCACASTGGLVD 438 (536)
T ss_dssp ---HHHHHHHHHHHHS--TTTEEEECSCCHHHHHHHHHHC----SEEEECCSCCSSCSHHHHHHHTTCCEEECSCTHHHH
T ss_pred ---HHHHHHHHHHHHC--CCCEEEEEECCHHHHHHHHHHH----HEEECCCCCCCCCHHHHHHHHCCCCEEECCCCCCHH
T ss_conf ---6899999987616--8854999714688899999862----342534656898889999998699899907998222
Q ss_pred CCCCCCCEE----------EECCCCHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 010498718----------9199999999999999973--99999999999988854099899999999999811699
Q 002660 443 IHRVLDNGL----------LVDPHDQQSVADALLKLVA--DKQLWARCRQNGLKNIHLFSWPEHCKTYLSRIAGCKPR 508 (895)
Q Consensus 443 ii~~~~~g~----------lv~p~d~~~la~ai~~ll~--~~~~~~~~~~~~~~~~~~~s~~~~a~~~~~~l~~~~~~ 508 (895)
+|.++.+|+ +++|.|+++++++|.++++ +.+.|+++.+++++ ++|||++.|++|+++|+++...
T Consensus 439 ~V~dg~~G~~~~~~~~~g~l~~~~d~~~la~ai~ral~~~~~~~~~~~~~~am~--~~fSW~~~A~~y~~ly~~L~~~ 514 (536)
T 3vue_A 439 TVIEGKTGFHMGRLSVDCKVVEPSDVKKVAATLKRAIKVVGTPAYEEMVRNCMN--QDLSWKGPAKNWENVLLGLGVA 514 (536)
T ss_dssp HCCBTTTEEECCCCCSCTTCCCHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHH--SCCSSHHHHHHHHHHHHTTCC-
T ss_pred EEECCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHH--HCCCHHHHHHHHHHHHHHHHHC
T ss_conf 022798763246677751587999999999999999985295999999999877--3599999999999999986044
No 6
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A
Probab=1.00 E-value=1 Score=332.48 Aligned_cols=447 Identities=16% Similarity=0.136 Sum_probs=280.4
Q ss_pred EEEEEEECCCCCCCCCCCCCCCC--CCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCC--CCCCCCCCC
Q ss_conf 06753320444456765688889--99841579999999980599911799952685599999887975--311589999
Q 002660 4 NNYFACSIHGLIRGENMELGRDS--DTGGQVKYVVELARALGSMPGVYRVDLLTRQVSAPDVDWSYGEP--TEMLTPRNS 79 (895)
Q Consensus 4 m~I~~is~~~~~~~~~~~~~~~~--~~GG~~~~v~~La~~L~~~G~~h~V~vvt~~~~~~~~~~~y~~~--~e~~~~~~~ 79 (895)
|||++++.+.. | ..||+++++.+|+++|+++| |+|+|+|....... ..+... ...+.....
T Consensus 1 MkIl~v~~~~~-----------P~~~~GG~~~~~~~la~~L~~~G--~~V~vi~~~~~~~~--~~~~~~~~~~~~~~~~~ 65 (485)
T 1rzu_A 1 MNVLSVSSEIY-----------PLIKTGGLADVVGALPIALEAHG--VRTRTLIPGYPAVK--AAVTDPVKCFEFTDLLG 65 (485)
T ss_dssp CEEEEECSCBT-----------TTBCSSHHHHHHHHHHHHHHTTT--CEEEEEEECCHHHH--HHCCSCEEEEEESCSSS
T ss_pred CEEEEEEEEEC-----------CCCCCCCHHHHHHHHHHHHHHCC--CEEEEEECCCCCCC--CCCCCCCEEEEEEEECC
T ss_conf 96999944651-----------56566549999999999999769--86999915644334--44356513689998308
Q ss_pred CCCCCCCCCCCCEEEEECCCCCC--CC--CCCC--CCCCCCH-HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECC
Q ss_conf 86344579999709994689998--76--6322--2589984-7889999999998633200113899988782999235
Q 002660 80 DDFMDDMGESSGAYIIRIPFGPK--DK--YIAK--ELLWPHI-PEFVDGALNHIIRMSNVLGEQIGGGKPVWPVAIHGHY 152 (895)
Q Consensus 80 ~~~~~~~~~~~gv~i~~i~~~~~--~~--~~~~--~~~~~~l-~~f~~~~~~~~~~~~~~l~~~~~~~~~~~pDiVh~h~ 152 (895)
...........|+++++++.... +. .+.. ...|... ..+.. +...+.+..+.+. +..+|||||+|.
T Consensus 66 ~~~~~~~~~~~gv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~------~~~~~DiIh~~~ 138 (485)
T 1rzu_A 66 EKADLLEVQHERLDLLILDAPAYYERSGGPYLGQTGKDYPDNWKRFAA-LSLAAARIGAGVL------PGWRPDMVHAHD 138 (485)
T ss_dssp CCEEEEEEEETTEEEEEEECHHHHCSSSCSSBCTTSSBCTTHHHHHHH-HHHHHHHHHTTCS------SSCCCSEEEEEH
T ss_pred CEEEEEEEEECCCEEEEEECHHHHCCCCCCCCCCCCCCCCCHHHHHHH-HHHHHHHHHHHHC------CCCCCCEEEECC
T ss_conf 747899999669569998486772777665588656665306799999-9999999999861------579998899646
Q ss_pred CCCHHHHHHHHCC--CCCCEEEEECCCCHHHH--HHHHHHHHCCHHHHH-HHHHHHHHHHHHHHHHCCCCEEEECCHHHH
Q ss_conf 6611289998501--79989998089824149--999997101588887-654366778999841024689992796999
Q 002660 153 ADAGDSAALLSGA--LNVPMLFTGHSLGRDKL--EQLLKQARLSRDEIN-ATYKIMRRIEAEELSLDASEIVITSTRQEI 227 (895)
Q Consensus 153 ~~~~~~~~~~~~~--~~ip~v~t~H~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~e~~~l~~ad~Vi~~s~~~~ 227 (895)
+.+++++..+++. .++|+|+|.|+.+.... ...+........... ....+......++..++.+|.|+++|+...
T Consensus 139 ~~~~~~~~~~~~~~~~~~p~v~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~ 218 (485)
T 1rzu_A 139 WQAAMTPVYMRYAETPEIPSLLTIHNIAFQGQFGANIFSKLALPAHAFGMEGIEYYNDVSFLKGGLQTATALSTVSPSYA 218 (485)
T ss_dssp HHHTTHHHHHHHSSSCCCCEEEEESCTTCCCEECGGGGGGSCCCGGGSSTTTTEETTEEEHHHHHHHHCSEEEESCHHHH
T ss_pred CCHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCHHHHHHCCCCHHHCCCCCCCCCCCCCHHHHHHHHCCEEEECCHHHH
T ss_conf 30557899973103589978999667544687887787343998032020001325623599988864677996087589
Q ss_pred HHHHHH-HCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCHHHHHH
Q ss_conf 999965-1499957899999967214333588999889919999899977899999987789999999999-94168864
Q 002660 228 EEQWRL-YDGFDPVLERKLRARIKRNVSCYGKFMPRMAIIPPGMEFHHIVPQDGDMDGETEGNEDNPASPD-PPIWSEIM 305 (895)
Q Consensus 228 ~~~~~~-~~~~~~~~~~~l~~~~~~gv~~~g~~~~~v~vip~Gid~~~f~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 305 (895)
+.+... ++.-.+. .++.+..++.+||||+|.+.|.+....... ..+........ ......+.
T Consensus 219 ~~~~~~~~g~~~~~--------------~~~~~~~~~~vi~ngvd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~r~ 282 (485)
T 1rzu_A 219 EEILTAEFGMGLEG--------------VIGSRAHVLHGIVNGIDADVWNPATDHLIH--DNYSAANLKNRALNKKAVAE 282 (485)
T ss_dssp HHTTSHHHHTTCHH--------------HHHTTGGGEEECCCCBCTTTSCTTTCTTSS--SCCBTTBCTTHHHHHHHHHH
T ss_pred HHHHCCCCCCCHHH--------------HHHHHCCCCEEECCCCCCCCCCCCCCCCCC--CCCCCCCHHHHHHHHHHHHH
T ss_conf 99835435766589--------------998606881697089860205886651100--01243244567886999999
Q ss_pred HHCCCCC-CCEEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCE
Q ss_conf 2138999-749999727899899899999997512546997199998149996422200289999999999862999968
Q 002660 306 RFFTNPR-KPVILALARPDPKKNITTLVKAFGECRPLRELANLTLIMGNRDGIDEMSSTSASVLLSVLKLIDKYDLYGQV 384 (895)
Q Consensus 306 ~~~~~~~-~~~il~vgrl~~~Kgi~~ll~A~~~l~~~~~~~~l~livG~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~v 384 (895)
+++.+.+ .++|+++||+.+.||++.+++|+..+.+ +...+ +++|+++ ..+...+..++.+++ ++|
T Consensus 283 ~~~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~--~~~~l-~ivG~g~---------~~~~~~l~~~~~~~~--~~v 348 (485)
T 1rzu_A 283 HFRIDDDGSPLFCVISRLTWQKGIDLMAEAVDEIVS--LGGRL-VVLGAGD---------VALEGALLAAASRHH--GRV 348 (485)
T ss_dssp HHTCCCSSSCEEEEESCBSTTTTHHHHHTTHHHHHH--TTCEE-EEEECBC---------HHHHHHHHHHHHHTT--TTE
T ss_pred HCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHH--CCCEE-EEEECCC---------HHHHHHHHHHHHHCC--CCE
T ss_conf 629888998399997257531287999999999872--69569-9996894---------689999999998678--868
Q ss_pred E-ECCCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHCCCCEEECCCCCCHHCCCCC---------CCEEEEC
Q ss_conf 8-49999989899999981229949994699999966999999909989981888820001049---------8718919
Q 002660 385 A-YPKHHKQSDVPEIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPIVATKNGGPVDIHRVL---------DNGLLVD 454 (895)
Q Consensus 385 ~-~~g~~~~~el~~ly~~A~~~~dv~v~ps~~Eg~gl~~~Ea~a~G~PVIas~~gg~~eii~~~---------~~g~lv~ 454 (895)
. |.|+ +.+++..+|+.| |++|+||..||||++++|||+||+|||+++.||..|++.++ .+|++++
T Consensus 349 ~~~~g~-~~~~~~~~~~~a----dv~v~pS~~E~~~~~~lEAma~G~PvI~s~~gg~~e~v~~~~~~~~~~~~~~G~l~~ 423 (485)
T 1rzu_A 349 GVAIGY-NEPLSHLMQAGC----DAIIIPSRFEPCGLTQLYALRYGCIPVVARTGGLADTVIDANHAALASKAATGVQFS 423 (485)
T ss_dssp EEEESC-CHHHHHHHHHHC----SEEEECCSCCSSCSHHHHHHHHTCEEEEESSHHHHHHCCBCCHHHHHTTCCCBEEES
T ss_pred EEECCC-CHHHHHHHHHCC----CEEEECCCCCCCCHHHHHHHHCCCCEEEECCCCHHHEECCCCCCCCCCCCCCCEEEC
T ss_conf 994389-979999998529----999978446887779999997799779808998311321565332345677634867
Q ss_pred CCCHHHHHHHHHHHH---HCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 999999999999997---3999999999999888540998999999999998116999
Q 002660 455 PHDQQSVADALLKLV---ADKQLWARCRQNGLKNIHLFSWPEHCKTYLSRIAGCKPRH 509 (895)
Q Consensus 455 p~d~~~la~ai~~ll---~~~~~~~~~~~~~~~~~~~~s~~~~a~~~~~~l~~~~~~~ 509 (895)
+.|+++++++|.+++ ++++.++++++++++ ++|||+.++++|+++|+++....
T Consensus 424 ~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~--~~fs~~~~~~~~~~~y~~~~~~~ 479 (485)
T 1rzu_A 424 PVTLDGLKQAIRRTVRYYHDPKLWTQMQKLGMK--SDVSWEKSAGLYAALYSQLISKG 479 (485)
T ss_dssp SCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--CCCBHHHHHHHHHHHHHHHTC--
T ss_pred CCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHHHHCCC
T ss_conf 899999999999999872799999999999998--86896999999999999863799
No 7
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A
Probab=1.00 E-value=1 Score=328.58 Aligned_cols=438 Identities=16% Similarity=0.142 Sum_probs=279.5
Q ss_pred EEEEEEECCCCCCCCCCCCCCCC--CCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCC--CCCC--------CCCCCC
Q ss_conf 06753320444456765688889--99841579999999980599911799952685599--9998--------879753
Q 002660 4 NNYFACSIHGLIRGENMELGRDS--DTGGQVKYVVELARALGSMPGVYRVDLLTRQVSAP--DVDW--------SYGEPT 71 (895)
Q Consensus 4 m~I~~is~~~~~~~~~~~~~~~~--~~GG~~~~v~~La~~L~~~G~~h~V~vvt~~~~~~--~~~~--------~y~~~~ 71 (895)
|||++++.... | ..||+++++.+|+++|+++| |+|+|+|...... .... .++...
T Consensus 1 MkIl~v~~~~~-----------P~~~~GG~~~~~~~la~~L~~~G--~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (485)
T 2qzs_A 1 MQVLHVCSEMF-----------PLLKTGGLADVIGALPAAQIADG--VDARVLLPAFPDIRRGVTDAQVVSRRDTFAGHI 67 (485)
T ss_dssp CEEEEECSCBT-----------TTBCSSHHHHHHHHHHHHHHHTT--CEEEEEEECCHHHHHHCTTCEEEEEECCTTCCE
T ss_pred CEEEEEEEECC-----------CCCCCCCHHHHHHHHHHHHHHCC--CEEEEEECCCCCCCCCCCCCEEEEEECCCCCCE
T ss_conf 96999964104-----------66567739999999999999749--878999447643454345640578741568717
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEEEECCCCCC---CC-CCCC--CCCCCCH-HHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 1158999986344579999709994689998---76-6322--2589984-78899999999986332001138999887
Q 002660 72 EMLTPRNSDDFMDDMGESSGAYIIRIPFGPK---DK-YIAK--ELLWPHI-PEFVDGALNHIIRMSNVLGEQIGGGKPVW 144 (895)
Q Consensus 72 e~~~~~~~~~~~~~~~~~~gv~i~~i~~~~~---~~-~~~~--~~~~~~l-~~f~~~~~~~~~~~~~~l~~~~~~~~~~~ 144 (895)
+.. . ...+|+.+++++.... .. .+.. ...|+.. ..+.. ....+.+..+.+.+ ..+
T Consensus 68 ~~~---------~--~~~~gv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~------~~~ 129 (485)
T 2qzs_A 68 TLL---------F--GHYNGVGIYLIDAPHLYDRPGSPYHDTNLFAYTDNVLRFAL-LGWVGAEMASGLDP------FWR 129 (485)
T ss_dssp EEE---------E--EEETTEEEEEEECHHHHCCSSCSSBCTTSCBCTTHHHHHHH-HHHHHHHHTTTSST------TCC
T ss_pred EEE---------E--EEECCCEEEEEECHHHCCCCCCCCCCCCCCCCCCHHHHHHH-HHHHHHHHHHHHCC------CCC
T ss_conf 999---------9--98789479997082650689876677545778735899999-99999999998456------789
Q ss_pred CCEEEECCCCCHHHHHHHH-CCCCCCEEEEECCCCHHHHH--HHHHHHHCCHHHHH-HHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 8299923566112899985-01799899980898241499--99997101588887-65436677899984102468999
Q 002660 145 PVAIHGHYADAGDSAALLS-GALNVPMLFTGHSLGRDKLE--QLLKQARLSRDEIN-ATYKIMRRIEAEELSLDASEIVI 220 (895)
Q Consensus 145 pDiVh~h~~~~~~~~~~~~-~~~~ip~v~t~H~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~e~~~l~~ad~Vi 220 (895)
|||||+|.+..+.++..++ +..++|+|+|.|+.+..... ..+........... ....+......++..++.+|.++
T Consensus 130 ~Divh~~~~~~~~~~~~~~~~~~~~p~v~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi 209 (485)
T 2qzs_A 130 PDVVHAHDWHAGLAPAYLAARGRPAKSVFTVHNLAYQGMFYAHHMNDIQLPWSFFNIHGLEFNGQISFLKAGLYYADHIT 209 (485)
T ss_dssp CSEEEEETGGGTTHHHHHHHTTCSSEEEEEESCTTCCCEEEGGGGGTTTCCGGGCSTTTTEETTEEEHHHHHHHHCSEEE
T ss_pred CCEEEEECCCHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHHHCCCCCHHCCCCCCCCCCCCCHHHHHHHHCCEEE
T ss_conf 97899606213378999754368997899946841357889888876499913213111232465469999987538688
Q ss_pred ECCHHHHHHHHHH-HCCCCHHHHHHHHHHHHCCCCCCCCCC--CCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 2796999999965-149995789999996721433358899--9889919999899977899999987789999999999
Q 002660 221 TSTRQEIEEQWRL-YDGFDPVLERKLRARIKRNVSCYGKFM--PRMAIIPPGMEFHHIVPQDGDMDGETEGNEDNPASPD 297 (895)
Q Consensus 221 ~~s~~~~~~~~~~-~~~~~~~~~~~l~~~~~~gv~~~g~~~--~~v~vip~Gid~~~f~~~~~~~~~~~~~~~~~~~~~~ 297 (895)
++|+...+.+... ++.-... .+. .+. .++.+||||+|.+.|.+....... ..+........
T Consensus 210 ~~S~~~~~~~~~~~~~~~~~~---~~~-----------~~~~~~~~~vi~ngvd~~~~~~~~~~~~~--~~~~~~~~~~~ 273 (485)
T 2qzs_A 210 AVSPTYAREITEPQFAYGMEG---LLQ-----------QRHREGRLSGVLNGVDEKIWSPETDLLLA--SRYTRDTLEDK 273 (485)
T ss_dssp ESSHHHHHHTTSHHHHTTCHH---HHH-----------HHHHTTCEEECCCCCCTTTSCTTTCTTSS--SCCCTTCGGGG
T ss_pred ECCHHHHHHHHCCCCCCCHHH---HHH-----------HHCCCCCEEEEECCCCCCCCCCCCCCCCC--CCCCCCCHHHH
T ss_conf 568899999854014724689---998-----------50667866997469876645864442221--23663006577
Q ss_pred -CCHHHHHHHHCCCC--CCCEEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHH
Q ss_conf -94168864213899--974999972789989989999999751254699719999814999642220028999999999
Q 002660 298 -PPIWSEIMRFFTNP--RKPVILALARPDPKKNITTLVKAFGECRPLRELANLTLIMGNRDGIDEMSSTSASVLLSVLKL 374 (895)
Q Consensus 298 -~~~~~~~~~~~~~~--~~~~il~vgrl~~~Kgi~~ll~A~~~l~~~~~~~~l~livG~~~~~~~~~~~~~~~~~~i~~~ 374 (895)
......+++++.++ +.++|+++||+.+.||++.+++|+..+.+ +...+ +++|+++ ..+...+..+
T Consensus 274 ~~~~~~~r~~~~~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~--~~~~l-~ivG~g~---------~~~~~~l~~~ 341 (485)
T 2qzs_A 274 AENKRQLQIAMGLKVDDKVPLFAVVSRLTSQKGLDLVLEALPGLLE--QGGQL-ALLGAGD---------PVLQEGFLAA 341 (485)
T ss_dssp HHHHHHHHHHHTCCCCTTSCEEEEEEEESGGGCHHHHHHHHHHHHH--TTCEE-EEEEEEC---------HHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHH--CCCEE-EEEECCC---------HHHHHHHHHH
T ss_conf 8849999987198889997399996667543587999999999862--79489-9992895---------6789999999
Q ss_pred HHHCCCCCCEE-ECCCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHCCCCEEECCCCCCHHCCCCC------
Q ss_conf 98629999688-49999989899999981229949994699999966999999909989981888820001049------
Q 002660 375 IDKYDLYGQVA-YPKHHKQSDVPEIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPIVATKNGGPVDIHRVL------ 447 (895)
Q Consensus 375 ~~~~~l~~~v~-~~g~~~~~el~~ly~~A~~~~dv~v~ps~~Eg~gl~~~Ea~a~G~PVIas~~gg~~eii~~~------ 447 (895)
+.+++ ++|. |.|+ +.+++..+|+.| |++|+||..||||++++|||+||+|||+++.||..|++.++
T Consensus 342 ~~~~~--~~v~~~~g~-~~~~~~~~~~~a----dv~v~pS~~E~~g~~~lEAma~G~PvI~s~~gg~~e~v~~~~~~~~~ 414 (485)
T 2qzs_A 342 AAEYP--GQVGVQIGY-HEAFSHRIMGGA----DVILVPSRFEPCGLTQLYGLKYGTLPLVRRTGGLADTVSDCSLENLA 414 (485)
T ss_dssp HHHST--TTEEEEESC-CHHHHHHHHHHC----SEEEECCSCCSSCSHHHHHHHHTCEEEEESSHHHHHHCCBCCHHHHH
T ss_pred HHHCC--CCEEEECCC-CHHHHHHHHHHC----CEEEECCCCCCCCHHHHHHHHCCCCEEECCCCCCCCEECCCCCCCCC
T ss_conf 97579--938994789-979999999758----89997885678767999999779977987899832552157644344
Q ss_pred ---CCEEEECCCCHHHHHHHHHHHH---HCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf ---8718919999999999999997---3999999999999888540998999999999998116999
Q 002660 448 ---DNGLLVDPHDQQSVADALLKLV---ADKQLWARCRQNGLKNIHLFSWPEHCKTYLSRIAGCKPRH 509 (895)
Q Consensus 448 ---~~g~lv~p~d~~~la~ai~~ll---~~~~~~~~~~~~~~~~~~~~s~~~~a~~~~~~l~~~~~~~ 509 (895)
.+|+++++.|+++++++|.+++ ++++.++++++++++ ++|||+.++++|+++|+++....
T Consensus 415 ~~~~~G~l~~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~--~~fs~~~~~~~~~~ly~~~~~~~ 480 (485)
T 2qzs_A 415 DGVASGFVFEDSNAWSLLRAIRRAFVLWSRPSLWRFVQRQAMA--MDFSWQVAAKSYRELYYRLKLEH 480 (485)
T ss_dssp TTCCCBEEECSSSHHHHHHHHHHHHHHHTSHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHC---
T ss_pred CCCCCEEEECCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 4666459977899999999999999870899999999999876--32898999999999999865421
No 8
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=1.00 E-value=1 Score=327.65 Aligned_cols=375 Identities=17% Similarity=0.196 Sum_probs=284.4
Q ss_pred CCCEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 93106753320444456765688889998415799999999805999117999526855999998879753115899998
Q 002660 1 MIFNNYFACSIHGLIRGENMELGRDSDTGGQVKYVVELARALGSMPGVYRVDLLTRQVSAPDVDWSYGEPTEMLTPRNSD 80 (895)
Q Consensus 1 ~~~m~I~~is~~~~~~~~~~~~~~~~~~GG~~~~v~~La~~L~~~G~~h~V~vvt~~~~~~~~~~~y~~~~e~~~~~~~~ 80 (895)
|.||||++++.... |..||.++++..++++| +| |+|+|+|....... ....
T Consensus 2 ~~~mkIl~v~~~~~-----------p~~gG~~~~~~~l~~~L--~g--~~v~v~~~~~~~~~--------~~~~------ 52 (394)
T 3okp_A 2 SASRKTLVVTNDFP-----------PRIGGIQSYLRDFIATQ--DP--ESIVVFASTQNAEE--------AHAY------ 52 (394)
T ss_dssp --CCCEEEEESCCT-----------TSCSHHHHHHHHHHTTS--CG--GGEEEEEECSSHHH--------HHHH------
T ss_pred CCCCEEEEEECCCC-----------CCCCHHHHHHHHHHHHH--CC--CEEEEEECCCCCCC--------HHHH------
T ss_conf 98866999927668-----------86551999999999985--69--76899977888642--------4443------
Q ss_pred CCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCHHHHH
Q ss_conf 63445799997099946899987663222589984788999999999863320011389998878299923566112899
Q 002660 81 DFMDDMGESSGAYIIRIPFGPKDKYIAKELLWPHIPEFVDGALNHIIRMSNVLGEQIGGGKPVWPVAIHGHYADAGDSAA 160 (895)
Q Consensus 81 ~~~~~~~~~~gv~i~~i~~~~~~~~~~~~~~~~~l~~f~~~~~~~~~~~~~~l~~~~~~~~~~~pDiVh~h~~~~~~~~~ 160 (895)
....++.+++++.... ++. ..+...+.+.+.+ .+||+||+|.........
T Consensus 53 ------~~~~~~~~~~~~~~~~---------~~~-~~~~~~l~~~~~~--------------~~~Dvv~~~~~~~~~~~~ 102 (394)
T 3okp_A 53 ------DKTLDYEVIRWPRSVM---------LPT-PTTAHAMAEIIRE--------------REIDNVWFGAAAPLALMA 102 (394)
T ss_dssp ------HTTCSSEEEEESSSSC---------CSC-HHHHHHHHHHHHH--------------TTCSEEEESSCTTGGGGH
T ss_pred ------CCCCCEEEEECCCCCC---------CCC-HHHHHHHHHHHHH--------------CCCCEEEECCCCHHHHHH
T ss_conf ------3456628998456545---------555-1469999999876--------------389889988854488999
Q ss_pred HHHCCCCCC-EEEEECCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHCCCCH
Q ss_conf 985017998-9998089824149999997101588887654366778999841024689992796999999965149995
Q 002660 161 LLSGALNVP-MLFTGHSLGRDKLEQLLKQARLSRDEINATYKIMRRIEAEELSLDASEIVITSTRQEIEEQWRLYDGFDP 239 (895)
Q Consensus 161 ~~~~~~~ip-~v~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~ad~Vi~~s~~~~~~~~~~~~~~~~ 239 (895)
.+++..++| +|++.|+...... .....++ .++..++.+|.++++|+...+.+...+.. .
T Consensus 103 ~~~~~~~~~~~i~~~h~~~~~~~----------------~~~~~~~--~~~~~~~~~d~ii~~s~~~~~~~~~~~~~-~- 162 (394)
T 3okp_A 103 GTAKQAGASKVIASTHGHEVGWS----------------MLPGSRQ--SLRKIGTEVDVLTYISQYTLRRFKSAFGS-H- 162 (394)
T ss_dssp HHHHHTTCSEEEEECCSTHHHHT----------------TSHHHHH--HHHHHHHHCSEEEESCHHHHHHHHHHHCS-S-
T ss_pred HHHHHCCCCCEEEEECCCHHHHH----------------HCCHHHH--HHHHHHHHCCEEEECCHHHHHHHHHHCCC-C-
T ss_conf 99975189819999346423332----------------1220348--99999986797997688999999984189-9-
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEEE
Q ss_conf 78999999672143335889998899199998999778999999877899999999999416886421389997499997
Q 002660 240 VLERKLRARIKRNVSCYGKFMPRMAIIPPGMEFHHIVPQDGDMDGETEGNEDNPASPDPPIWSEIMRFFTNPRKPVILAL 319 (895)
Q Consensus 240 ~~~~~l~~~~~~gv~~~g~~~~~v~vip~Gid~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v 319 (895)
.++.+||||+|.+.|.+.. .......+.+++.++++++|+++
T Consensus 163 ---------------------~~~~vi~ngv~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~i~~~ 204 (394)
T 3okp_A 163 ---------------------PTFEHLPSGVDVKRFTPAT-----------------PEDKSATRKKLGFTDTTPVIACN 204 (394)
T ss_dssp ---------------------SEEEECCCCBCTTTSCCCC-----------------HHHHHHHHHHTTCCTTCCEEEEE
T ss_pred ---------------------CCEEEECCCCCHHHCCCCC-----------------CHHHHHHHHHCCCCCCCEEEEEE
T ss_conf ---------------------9858836985888758877-----------------21468999864998576699997
Q ss_pred ECCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCHHHHH
Q ss_conf 27899899899999997512546997199998149996422200289999999999862999968849999989899999
Q 002660 320 ARPDPKKNITTLVKAFGECRPLRELANLTLIMGNRDGIDEMSSTSASVLLSVLKLIDKYDLYGQVAYPKHHKQSDVPEIY 399 (895)
Q Consensus 320 grl~~~Kgi~~ll~A~~~l~~~~~~~~l~livG~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~v~~~g~~~~~el~~ly 399 (895)
||+.+.||++.+++|+..+.+..+...+ +++|+++.. ..+..++ .++.++|.|.|+++.+++..+|
T Consensus 205 G~~~~~Kg~~~li~a~~~l~~~~~~~~l-~i~G~g~~~-----------~~l~~~~--~~~~~~v~~~g~~~~~~~~~~~ 270 (394)
T 3okp_A 205 SRLVPRKGQDSLIKAMPQVIAARPDAQL-LIVGSGRYE-----------STLRRLA--TDVSQNVKFLGRLEYQDMINTL 270 (394)
T ss_dssp SCSCGGGCHHHHHHHHHHHHHHSTTCEE-EEECCCTTH-----------HHHHHHT--GGGGGGEEEEESCCHHHHHHHH
T ss_pred ECCCCCCCHHHHHHHHHHHHHHCCCEEE-EEECCCHHH-----------HHHHHHH--HCCCCEEEECCCCCHHHHHHHH
T ss_conf 6441345887999999998861898699-998686479-----------9999987--5545729990789978999999
Q ss_pred HHHHCCCCEEEECCCC-------CCCCHHHHHHHHCCCCEEECCCCCCHHCCCCCCCEEEECCCCHHHHHHHHHHHHHCH
Q ss_conf 9812299499946999-------999669999999099899818888200010498718919999999999999997399
Q 002660 400 RLAAKTKGVFINPAFI-------EPFGLTLIEAAAHGLPIVATKNGGPVDIHRVLDNGLLVDPHDQQSVADALLKLVADK 472 (895)
Q Consensus 400 ~~A~~~~dv~v~ps~~-------Eg~gl~~~Ea~a~G~PVIas~~gg~~eii~~~~~g~lv~p~d~~~la~ai~~ll~~~ 472 (895)
+.| |++|+||.. |+||++++|||+||+|||+++.|+..|++.++ +|+++++.|+++++++|.++++++
T Consensus 271 ~~a----d~~v~ps~~~~~~~~~e~~~~~~~Ea~a~G~PvI~~~~~~~~e~i~~~-~g~~~~~~d~~~l~~~i~~l~~~~ 345 (394)
T 3okp_A 271 AAA----DIFAMPARTRGGGLDVEGLGIVYLEAQACGVPVIAGTSGGAPETVTPA-TGLVVEGSDVDKLSELLIELLDDP 345 (394)
T ss_dssp HHC----SEEEECCCCBGGGTBCCSSCHHHHHHHHTTCCEEECSSTTGGGGCCTT-TEEECCTTCHHHHHHHHHHHHTCH
T ss_pred HHC----CEEEECCCCCCCCCCCCCCCCHHHHHHHCCCCEEEECCCCHHHHHHCC-CCEEECCCCHHHHHHHHHHHHHCH
T ss_conf 868----999945755566656555673999999759979993899737787468-856728999999999999998199
Q ss_pred HHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 99999999998885-4099899999999999811699999
Q 002660 473 QLWARCRQNGLKNI-HLFSWPEHCKTYLSRIAGCKPRHPQ 511 (895)
Q Consensus 473 ~~~~~~~~~~~~~~-~~~s~~~~a~~~~~~l~~~~~~~~~ 511 (895)
+.++++++++++.+ ++|||+.+++++.++|+++.+....
T Consensus 346 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~r~~~~ 385 (394)
T 3okp_A 346 IRRAAMGAAGRAHVEAEWSWEIMGERLTNILQSEPRKLAA 385 (394)
T ss_dssp HHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHSCCC----
T ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCH
T ss_conf 9999999999999987479999999999999972037613
No 9
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Probab=1.00 E-value=1 Score=320.05 Aligned_cols=369 Identities=16% Similarity=0.192 Sum_probs=268.4
Q ss_pred EEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 06753320444456765688889998415799999999805999117999526855999998879753115899998634
Q 002660 4 NNYFACSIHGLIRGENMELGRDSDTGGQVKYVVELARALGSMPGVYRVDLLTRQVSAPDVDWSYGEPTEMLTPRNSDDFM 83 (895)
Q Consensus 4 m~I~~is~~~~~~~~~~~~~~~~~~GG~~~~v~~La~~L~~~G~~h~V~vvt~~~~~~~~~~~y~~~~e~~~~~~~~~~~ 83 (895)
|||++++.+.. ..||.++++.+++++|+++| |+|+++|...... .
T Consensus 1 MkIl~i~~~~~------------~~gG~~~~~~~l~~~L~~~G--~~V~v~~~~~~~~-~-------------------- 45 (374)
T 2iw1_A 1 MIVAFCLYKYF------------PFGGLQRDFMRIASTVAARG--HHVRVYTQSWEGD-C-------------------- 45 (374)
T ss_dssp -CEEEECSEEC------------TTCHHHHHHHHHHHHHHHTT--CCEEEEESEECSC-C--------------------
T ss_pred CEEEEEEEECC------------CCCCHHHHHHHHHHHHHHCC--CEEEEEECCCCCC-C--------------------
T ss_conf 96999972158------------87616359999999999679--8489996489887-8--------------------
Q ss_pred CCCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCHHHHHHHH
Q ss_conf 45799997099946899987663222589984788999999999863320011389998878299923566112899985
Q 002660 84 DDMGESSGAYIIRIPFGPKDKYIAKELLWPHIPEFVDGALNHIIRMSNVLGEQIGGGKPVWPVAIHGHYADAGDSAALLS 163 (895)
Q Consensus 84 ~~~~~~~gv~i~~i~~~~~~~~~~~~~~~~~l~~f~~~~~~~~~~~~~~l~~~~~~~~~~~pDiVh~h~~~~~~~~~~~~ 163 (895)
.+++++++++..... ... ....+...+...+.+ .+||+||+|....+..+....
T Consensus 46 -----~~~~~v~~~~~~~~~-~~~------~~~~~~~~l~~~i~~--------------~~~Dvv~~~~~~~~~~~~~~~ 99 (374)
T 2iw1_A 46 -----PKAFELIQVPVKSHT-NHG------RNAEYYAWVQNHLKE--------------HPADRVVGFNKMPGLDVYFAA 99 (374)
T ss_dssp -----CTTCEEEECCCCCSS-HHH------HHHHHHHHHHHHHHH--------------SCCSEEEESSCCTTCSEEECC
T ss_pred -----CCCCEEEEECCCCCC-CHH------HHHHHHHHHHHHHHC--------------CCCCEEEEECCCCCCEEEECC
T ss_conf -----877479997168644-301------677899999999850--------------699889996677885213001
Q ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH--CCCCEEEECCHHHHHHHHHHHCCCCHHH
Q ss_conf 01799899980898241499999971015888876543667789998410--2468999279699999996514999578
Q 002660 164 GALNVPMLFTGHSLGRDKLEQLLKQARLSRDEINATYKIMRRIEAEELSL--DASEIVITSTRQEIEEQWRLYDGFDPVL 241 (895)
Q Consensus 164 ~~~~ip~v~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l--~~ad~Vi~~s~~~~~~~~~~~~~~~~~~ 241 (895)
...+++.+.+.|+..... ...+++...+ ++..+ +.+|.++++|+...+.+...++. ..
T Consensus 100 ~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~--~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~-~~-- 159 (374)
T 2iw1_A 100 DVCYAEKVAQEKGFLYRL---------------TSRYRHYAAF--ERATFEQGKSTKLMMLTDKQIADFQKHYQT-EP-- 159 (374)
T ss_dssp SCCHHHHHHHHCCHHHHT---------------SHHHHHHHHH--HHHHHSTTCCCEEEESCHHHHHHHHHHHCC-CG--
T ss_pred CCCCCEEEEECCCCHHHH---------------CHHHHHHHHH--HHHHHHCCCCCEEEECCHHHHHHHHHHHCC-CH--
T ss_conf 565421333035621210---------------4778999999--999864267757998698999999997189-71--
Q ss_pred HHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEEEEC
Q ss_conf 99999967214333588999889919999899977899999987789999999999941688642138999749999727
Q 002660 242 ERKLRARIKRNVSCYGKFMPRMAIIPPGMEFHHIVPQDGDMDGETEGNEDNPASPDPPIWSEIMRFFTNPRKPVILALAR 321 (895)
Q Consensus 242 ~~~l~~~~~~gv~~~g~~~~~v~vip~Gid~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~vgr 321 (895)
.++.+||||+|.+.|.+... .......+.+++.++++++++++||
T Consensus 160 -------------------~~~~vi~ngv~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~i~~~G~ 204 (374)
T 2iw1_A 160 -------------------ERFQILPPGIYPDRKYSEQI----------------PNSREIYRQKNGIKEQQNLLLQVGS 204 (374)
T ss_dssp -------------------GGEEECCCCCCGGGSGGGSC----------------TTHHHHHHHHTTCCTTCEEEEEECS
T ss_pred -------------------HHEEEECCCCCHHHCCCCCC----------------HHHHHHHHHHHCCCCCCEEEEEECC
T ss_conf -------------------10688569858776176442----------------3579999997289978729999646
Q ss_pred CCCCCCHHHHHHHHHHCCCCCCCCCEE-EEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCHHHHHH
Q ss_conf 899899899999997512546997199-9981499964222002899999999998629999688499999898999999
Q 002660 322 PDPKKNITTLVKAFGECRPLRELANLT-LIMGNRDGIDEMSSTSASVLLSVLKLIDKYDLYGQVAYPKHHKQSDVPEIYR 400 (895)
Q Consensus 322 l~~~Kgi~~ll~A~~~l~~~~~~~~l~-livG~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~v~~~g~~~~~el~~ly~ 400 (895)
+.+.||++.+++|+..+.+.. .+++. +++|+++. .++..++.++++.++|.|.|+ .+++..+|+
T Consensus 205 ~~~~K~~~~li~a~~~l~~~~-~~~~~l~i~G~g~~------------~~~~~~~~~~~~~~~v~~~g~--~~~~~~~~~ 269 (374)
T 2iw1_A 205 DFGRKGVDRSIEALASLPESL-RHNTLLFVVGQDKP------------RKFEALAEKLGVRSNVHFFSG--RNDVSELMA 269 (374)
T ss_dssp CTTTTTHHHHHHHHHTSCHHH-HHTEEEEEESSSCC------------HHHHHHHHHHTCGGGEEEESC--CSCHHHHHH
T ss_pred CHHHCCHHHHHHHHHHHHHCC-CCCEEEEEECCCCH------------HHHHHHHHHCCCCCCEEECCC--CCCHHHHHH
T ss_conf 410138899999999867604-88669999708987------------999999997398773797788--403899998
Q ss_pred HHHCCCCEEEECCCCCCCCHHHHHHHHCCCCEEECCCCCCHHCCCCCCCEEEEC-CCCHHHHHHHHHHHHHCHHHHHHHH
Q ss_conf 812299499946999999669999999099899818888200010498718919-9999999999999973999999999
Q 002660 401 LAAKTKGVFINPAFIEPFGLTLIEAAAHGLPIVATKNGGPVDIHRVLDNGLLVD-PHDQQSVADALLKLVADKQLWARCR 479 (895)
Q Consensus 401 ~A~~~~dv~v~ps~~Eg~gl~~~Ea~a~G~PVIas~~gg~~eii~~~~~g~lv~-p~d~~~la~ai~~ll~~~~~~~~~~ 479 (895)
.| |++|+||..|+||++++|||+||+|||+++.|+..|++.++.+|++++ |.|+++++++|.+++++++.+++++
T Consensus 270 ~a----d~~v~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~e~i~~~~~g~~~~~~~~~~~l~~~i~~l~~~~~~~~~~~ 345 (374)
T 2iw1_A 270 AA----DLLLHPAYQEAAGIVLLEAITAGLPVLTTAVCGYAHYIADANCGTVIAEPFSQEQLNEVLRKALTQSPLRMAWA 345 (374)
T ss_dssp HC----SEEEECCSCCSSCHHHHHHHHHTCCEEEETTSTTTHHHHHHTCEEEECSSCCHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HC----CEEEECCCCCCCCCHHHHHHHCCCCEEEECCCCCHHHHCCCCCEEEECCCCCHHHHHHHHHHHHCCHHHHHHHH
T ss_conf 46----88983542477556999999779988982699804443069831996799998999999999971949999999
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHCCCC
Q ss_conf 9998885409989999999999981169
Q 002660 480 QNGLKNIHLFSWPEHCKTYLSRIAGCKP 507 (895)
Q Consensus 480 ~~~~~~~~~~s~~~~a~~~~~~l~~~~~ 507 (895)
+++++.+++|+|..+++++.++++..+.
T Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 373 (374)
T 2iw1_A 346 ENARHYADTQDLYSLPEKAADIITGGLD 373 (374)
T ss_dssp HHHHHHHHHSCCSCHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 9999999875389999999999998636
No 10
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Probab=1.00 E-value=1 Score=315.21 Aligned_cols=362 Identities=17% Similarity=0.233 Sum_probs=271.7
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCC
Q ss_conf 99984157999999998059991179995268559999988797531158999986344579999709994689998766
Q 002660 26 SDTGGQVKYVVELARALGSMPGVYRVDLLTRQVSAPDVDWSYGEPTEMLTPRNSDDFMDDMGESSGAYIIRIPFGPKDKY 105 (895)
Q Consensus 26 ~~~GG~~~~v~~La~~L~~~G~~h~V~vvt~~~~~~~~~~~y~~~~e~~~~~~~~~~~~~~~~~~gv~i~~i~~~~~~~~ 105 (895)
|..||.++++.+|+++|+++| |+|+++|..... .. . ...+++.+..++.... ..
T Consensus 24 p~~GG~~~~~~~la~~L~~~G--~~V~v~~~~~~~-~~------~----------------~~~~~i~~~~~~~~~~-~~ 77 (394)
T 2jjm_A 24 PSVGGSGVVGTELGKQLAERG--HEIHFITSGLPF-RL------N----------------KVYPNIYFHEVTVNQY-SV 77 (394)
T ss_dssp C--CHHHHHHHHHHHHHHHTT--CEEEEECSSCC---------------------------CCCTTEEEECCCCC-----
T ss_pred CCCCCHHHHHHHHHHHHHHCC--CEEEEEECCCCC-CC------C----------------CCCCCEEEEECCCCCC-CC
T ss_conf 898987899999999999689--879999688877-62------0----------------0378628985256665-40
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCC-HHHHHHHHCCC--CCCEEEEECCCCHHHH
Q ss_conf 32225899847889999999998633200113899988782999235661-12899985017--9989998089824149
Q 002660 106 IAKELLWPHIPEFVDGALNHIIRMSNVLGEQIGGGKPVWPVAIHGHYADA-GDSAALLSGAL--NVPMLFTGHSLGRDKL 182 (895)
Q Consensus 106 ~~~~~~~~~l~~f~~~~~~~~~~~~~~l~~~~~~~~~~~pDiVh~h~~~~-~~~~~~~~~~~--~ip~v~t~H~~~~~~~ 182 (895)
.. ...+...+...+...+.+ .+||+||+|+... .+.+....+.. ++|+|++.|+......
T Consensus 78 ~~---~~~~~~~~~~~l~~~l~~--------------~~~Dvv~~~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~ 140 (394)
T 2jjm_A 78 FQ---YPPYDLALASKMAEVAQR--------------ENLDILHVHYAIPHAICAYLAKQMIGERIKIVTTLHGTDITVL 140 (394)
T ss_dssp CC---SCCHHHHHHHHHHHHHHH--------------HTCSEEEECSSTTHHHHHHHHHHHTTTCSEEEEECCHHHHHTT
T ss_pred CC---CCCCCHHHHHHHHHHHHH--------------CCCCEEEECCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCC
T ss_conf 01---565207999999999977--------------6999999724337778899988862678777999715752125
Q ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 99999710158888765436677899984102468999279699999996514999578999999672143335889998
Q 002660 183 EQLLKQARLSRDEINATYKIMRRIEAEELSLDASEIVITSTRQEIEEQWRLYDGFDPVLERKLRARIKRNVSCYGKFMPR 262 (895)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~ad~Vi~~s~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~~g~~~~~ 262 (895)
+. .....+ .++..++.+|.++++|+...+.+...+.. + .+
T Consensus 141 ------~~---------~~~~~~--~~~~~~~~ad~ii~~s~~~~~~~~~~~~~--~---------------------~~ 180 (394)
T 2jjm_A 141 ------GS---------DPSLNN--LIRFGIEQSDVVTAVSHSLINETHELVKP--N---------------------KD 180 (394)
T ss_dssp ------TT---------CTTTHH--HHHHHHHHSSEEEESCHHHHHHHHHHTCC--S---------------------SC
T ss_pred ------CC---------CHHHHH--HHHHHHHHCCEEEECCHHHHHHHHHHHCC--C---------------------CC
T ss_conf ------88---------877889--99999861998999799999999985287--6---------------------56
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHHHCCCCC
Q ss_conf 89919999899977899999987789999999999941688642138999749999727899899899999997512546
Q 002660 263 MAIIPPGMEFHHIVPQDGDMDGETEGNEDNPASPDPPIWSEIMRFFTNPRKPVILALARPDPKKNITTLVKAFGECRPLR 342 (895)
Q Consensus 263 v~vip~Gid~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~vgrl~~~Kgi~~ll~A~~~l~~~~ 342 (895)
+.+||||+|.+.|.+.. ....+.+++.++++++|+++||+.+.||++.+++|+..+.+.
T Consensus 181 ~~vi~ngv~~~~~~~~~--------------------~~~~~~~~~~~~~~~~i~~~G~~~~~Kg~~~li~a~~~l~~~- 239 (394)
T 2jjm_A 181 IQTVYNFIDERVYFKRD--------------------MTQLKKEYGISESEKILIHISNFRKVKRVQDVVQAFAKIVTE- 239 (394)
T ss_dssp EEECCCCCCTTTCCCCC--------------------CHHHHHHTTCC---CEEEEECCCCGGGTHHHHHHHHHHHHHS-
T ss_pred EEEECCCCCHHHCCCCC--------------------HHHHHHHCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHH-
T ss_conf 79955875687608863--------------------488998719998880899950466535889999999999853-
Q ss_pred CCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCHHH
Q ss_conf 99719999814999642220028999999999986299996884999998989999998122994999469999996699
Q 002660 343 ELANLTLIMGNRDGIDEMSSTSASVLLSVLKLIDKYDLYGQVAYPKHHKQSDVPEIYRLAAKTKGVFINPAFIEPFGLTL 422 (895)
Q Consensus 343 ~~~~l~livG~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~v~~~g~~~~~el~~ly~~A~~~~dv~v~ps~~Eg~gl~~ 422 (895)
....+ +++|+++. ..++.+.+.++++.++|.|.|+ .+++..+|+.| |++|+||..|+||+++
T Consensus 240 ~~~~l-~i~G~g~~-----------~~~l~~~~~~~~l~~~v~~~g~--~~~~~~~~~~a----dv~v~ps~~e~~~~~~ 301 (394)
T 2jjm_A 240 VDAKL-LLVGDGPE-----------FCTILQLVKNLHIEDRVLFLGK--QDNVAELLAMS----DLMLLLSEKESFGLVL 301 (394)
T ss_dssp SCCEE-EEECCCTT-----------HHHHHHHHHTTTCGGGBCCCBS--CSCTHHHHHTC----SEEEECCSCCSCCHHH
T ss_pred CCCEE-EEECCCHH-----------HHHHHHHHHHCCCCCEEEEECC--HHHHHHHHHHC----CEEEECCCCCCCCHHH
T ss_conf 79789-99889657-----------9999999997399875999276--66599999867----8999656667872689
Q ss_pred HHHHHCCCCEEECCCCCCHHCCCCCCCEEEECCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHH
Q ss_conf 9999909989981888820001049871891999999999999999739999999999998885-409989999999999
Q 002660 423 IEAAAHGLPIVATKNGGPVDIHRVLDNGLLVDPHDQQSVADALLKLVADKQLWARCRQNGLKNI-HLFSWPEHCKTYLSR 501 (895)
Q Consensus 423 ~Ea~a~G~PVIas~~gg~~eii~~~~~g~lv~p~d~~~la~ai~~ll~~~~~~~~~~~~~~~~~-~~~s~~~~a~~~~~~ 501 (895)
+|||+||+|||+++.|+..|++.++.+|+++++.|+++++++|.+++++++.++++++++++.+ ++|||+.+++++.++
T Consensus 302 ~EAma~G~PvI~~~~~~~~e~v~~~~~g~~~~~~d~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 381 (394)
T 2jjm_A 302 LEAMACGVPCIGTRVGGIPEVIQHGDTGYLCEVGDTTGVADQAIQLLKDEELHRNMGERARESVYEQFRSEKIVSQYETI 381 (394)
T ss_dssp HHHHHTTCCEEEECCTTSTTTCCBTTTEEEECTTCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHCCCCEEEECCCCHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf 99996499889815898077763488539968999999999999997497999999999999998737999999999999
Q ss_pred HHCCCCCC
Q ss_conf 98116999
Q 002660 502 IAGCKPRH 509 (895)
Q Consensus 502 l~~~~~~~ 509 (895)
|++++...
T Consensus 382 ~~~~~~~~ 389 (394)
T 2jjm_A 382 YYDVLRDD 389 (394)
T ss_dssp HHHTC---
T ss_pred HHHHHHHH
T ss_conf 99999666
Done!