Query 002661
Match_columns 895
No_of_seqs 211 out of 1113
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 04:32:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002661.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002661hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03202 protein argonaute; Pr 100.0 2E-174 4E-179 1580.1 91.7 868 26-895 24-900 (900)
2 KOG1041 Translation initiation 100.0 2E-140 5E-145 1268.8 73.6 801 33-895 43-876 (876)
3 KOG1042 Germ-line stem cell di 100.0 2E-131 4E-136 1075.9 46.6 714 40-862 87-832 (845)
4 cd04657 Piwi_ago-like Piwi_ago 100.0 4.5E-97 1E-101 843.1 41.4 407 428-860 1-426 (426)
5 cd04658 Piwi_piwi-like_Euk Piw 100.0 7.1E-92 1.5E-96 808.8 45.6 433 397-858 3-448 (448)
6 cd02826 Piwi-like Piwi-like: P 100.0 2.1E-83 4.5E-88 725.1 39.5 380 441-858 2-393 (393)
7 PF02171 Piwi: Piwi domain; I 100.0 2.3E-69 4.9E-74 593.7 25.9 293 553-861 1-302 (302)
8 cd04659 Piwi_piwi-like_ProArk 100.0 4.6E-45 1E-49 415.3 24.1 285 536-858 96-402 (404)
9 PF02170 PAZ: PAZ domain; Int 99.9 1.4E-22 3.1E-27 194.9 10.7 129 267-406 1-134 (135)
10 cd02825 PAZ PAZ domain, named 99.8 5.6E-19 1.2E-23 164.3 9.8 106 266-383 1-115 (115)
11 cd02845 PAZ_piwi_like PAZ doma 99.8 5.4E-19 1.2E-23 163.7 8.0 107 267-385 2-116 (117)
12 cd02846 PAZ_argonaute_like PAZ 99.8 1.7E-18 3.6E-23 161.5 10.9 107 267-383 2-114 (114)
13 PF08699 DUF1785: Domain of un 99.5 3.2E-14 7E-19 111.0 3.9 51 215-266 2-52 (52)
14 cd02844 PAZ_CAF_like PAZ domai 99.4 1.4E-13 3E-18 130.4 6.5 84 290-384 27-133 (135)
15 COG1431 Argonaute homolog, imp 99.2 2E-09 4.4E-14 119.4 20.5 348 450-862 308-672 (685)
16 cd02843 PAZ_dicer_like PAZ dom 98.6 4.4E-08 9.6E-13 89.4 6.0 64 292-368 39-106 (122)
17 PF13032 DUF3893: Domain of un 91.6 0.37 8E-06 46.2 5.8 51 803-853 67-117 (138)
18 PF08459 UvrC_HhH_N: UvrC Heli 89.8 1.4 3E-05 43.1 7.9 106 626-763 9-120 (155)
19 PRK11617 endonuclease V; Provi 86.5 23 0.0005 36.9 14.8 48 803-860 170-217 (224)
20 TIGR00194 uvrC excinuclease AB 77.0 19 0.00041 43.2 11.5 110 629-768 382-498 (574)
21 PRK14672 uvrC excinuclease ABC 76.4 20 0.00042 43.4 11.3 110 626-766 452-564 (691)
22 PRK12306 uvrC excinuclease ABC 73.0 28 0.0006 41.2 11.3 107 627-766 365-475 (519)
23 PRK14670 uvrC excinuclease ABC 71.2 36 0.00078 40.8 11.8 108 627-762 357-468 (574)
24 PRK14667 uvrC excinuclease ABC 68.1 38 0.00081 40.6 11.1 107 627-766 360-470 (567)
25 PRK14671 uvrC excinuclease ABC 65.8 41 0.00088 40.8 11.0 108 627-767 414-525 (621)
26 PRK14669 uvrC excinuclease ABC 64.4 47 0.001 40.2 11.1 108 627-766 395-506 (624)
27 PRK00558 uvrC excinuclease ABC 57.6 84 0.0018 38.1 11.7 100 627-758 382-485 (598)
28 cd06559 Endonuclease_V Endonuc 57.0 66 0.0014 33.2 9.2 42 803-854 166-207 (208)
29 PRK14666 uvrC excinuclease ABC 52.9 98 0.0021 37.8 11.0 101 626-758 470-571 (694)
30 PF00763 THF_DHG_CYH: Tetrahyd 51.3 33 0.00071 31.9 5.5 69 536-605 16-85 (117)
31 PRK14668 uvrC excinuclease ABC 50.9 86 0.0019 37.7 10.2 100 627-760 374-479 (577)
32 PRK14185 bifunctional 5,10-met 44.1 65 0.0014 35.1 7.1 67 538-604 19-86 (293)
33 PRK14171 bifunctional 5,10-met 42.0 90 0.002 33.9 7.8 65 540-604 22-87 (288)
34 PRK14187 bifunctional 5,10-met 41.0 98 0.0021 33.8 7.9 66 540-605 22-88 (294)
35 PRK14184 bifunctional 5,10-met 40.6 95 0.002 33.8 7.6 68 537-604 18-86 (286)
36 PRK14176 bifunctional 5,10-met 39.9 1.1E+02 0.0025 33.2 8.1 66 540-605 28-94 (287)
37 KOG3123 Diphthine synthase [Tr 39.7 37 0.00081 34.4 4.0 47 550-599 131-177 (272)
38 PRK14183 bifunctional 5,10-met 38.4 1E+02 0.0022 33.5 7.4 55 550-604 31-86 (281)
39 PRK10792 bifunctional 5,10-met 36.6 1E+02 0.0022 33.5 7.2 68 538-605 21-89 (285)
40 PLN02897 tetrahydrofolate dehy 36.6 1.1E+02 0.0023 34.2 7.4 66 540-605 76-142 (345)
41 PRK14192 bifunctional 5,10-met 36.3 1.1E+02 0.0024 33.3 7.4 74 540-613 23-99 (283)
42 PRK14177 bifunctional 5,10-met 36.0 1.2E+02 0.0026 32.9 7.6 65 540-604 23-88 (284)
43 PLN02616 tetrahydrofolate dehy 36.0 1.2E+02 0.0026 34.0 7.7 65 540-604 93-158 (364)
44 PRK14186 bifunctional 5,10-met 35.9 1.2E+02 0.0025 33.3 7.4 66 540-605 22-88 (297)
45 PLN02516 methylenetetrahydrofo 35.8 1.3E+02 0.0028 32.9 7.8 65 541-605 30-95 (299)
46 PRK14188 bifunctional 5,10-met 35.1 1.3E+02 0.0028 32.9 7.7 66 540-605 22-88 (296)
47 PRK14174 bifunctional 5,10-met 35.0 1.2E+02 0.0026 33.2 7.4 66 540-605 21-87 (295)
48 PRK14180 bifunctional 5,10-met 35.0 1.2E+02 0.0026 32.9 7.3 65 540-604 21-86 (282)
49 PRK14168 bifunctional 5,10-met 34.2 1.2E+02 0.0026 33.2 7.2 69 536-604 19-88 (297)
50 PRK14169 bifunctional 5,10-met 33.0 1.4E+02 0.003 32.5 7.4 65 539-604 20-85 (282)
51 PRK00766 hypothetical protein; 32.4 74 0.0016 32.5 5.0 36 815-857 152-187 (194)
52 PRK14179 bifunctional 5,10-met 31.4 1.6E+02 0.0035 32.0 7.6 66 540-605 22-88 (284)
53 PRK14166 bifunctional 5,10-met 31.4 1.4E+02 0.003 32.5 7.1 64 540-604 21-85 (282)
54 PRK14193 bifunctional 5,10-met 31.3 1.4E+02 0.0031 32.4 7.2 56 550-605 32-88 (284)
55 PRK14194 bifunctional 5,10-met 31.1 1.5E+02 0.0032 32.5 7.3 55 550-604 33-88 (301)
56 PRK14191 bifunctional 5,10-met 30.6 1.6E+02 0.0035 32.0 7.4 66 540-605 21-87 (285)
57 PRK14172 bifunctional 5,10-met 30.5 1.6E+02 0.0034 31.9 7.3 69 537-605 19-88 (278)
58 PF02772 S-AdoMet_synt_M: S-ad 30.0 32 0.0007 32.1 1.8 30 831-860 12-41 (120)
59 PRK14190 bifunctional 5,10-met 29.0 1.6E+02 0.0035 32.0 7.1 57 549-605 31-88 (284)
60 COG1515 Nfi Deoxyinosine 3'end 28.9 2.1E+02 0.0045 29.5 7.4 35 815-856 177-211 (212)
61 cd06559 Endonuclease_V Endonuc 28.8 2.8E+02 0.0061 28.7 8.6 15 626-640 23-37 (208)
62 KOG1924 RhoA GTPase effector D 27.2 70 0.0015 38.8 4.2 24 35-59 625-648 (1102)
63 COG0322 UvrC Nuclease subunit 26.0 4.9E+02 0.011 31.4 11.0 107 627-766 378-486 (581)
64 PRK14170 bifunctional 5,10-met 25.9 1.9E+02 0.0042 31.4 7.0 56 549-604 30-86 (284)
65 KOG2488 Acetyltransferase (GNA 24.7 1.4E+02 0.0029 30.3 5.1 45 50-98 105-149 (202)
66 PRK14181 bifunctional 5,10-met 24.7 2.1E+02 0.0046 31.1 7.1 56 549-604 25-81 (287)
67 PRK14189 bifunctional 5,10-met 24.5 2.5E+02 0.0053 30.6 7.5 55 550-604 32-87 (285)
68 PRK14182 bifunctional 5,10-met 24.4 2.1E+02 0.0045 31.1 6.9 55 550-604 30-85 (282)
69 PRK14173 bifunctional 5,10-met 24.3 2.1E+02 0.0046 31.1 7.0 57 549-605 28-85 (287)
70 PRK14178 bifunctional 5,10-met 24.1 2.5E+02 0.0055 30.4 7.5 57 549-605 25-82 (279)
71 PRK14167 bifunctional 5,10-met 24.1 2.2E+02 0.0049 31.1 7.2 56 550-605 31-87 (297)
72 COG0190 FolD 5,10-methylene-te 24.0 2.1E+02 0.0045 31.0 6.7 66 539-604 19-85 (283)
73 PRK14175 bifunctional 5,10-met 22.4 2.4E+02 0.0052 30.7 7.0 55 550-604 32-87 (286)
No 1
>PLN03202 protein argonaute; Provisional
Probab=100.00 E-value=1.8e-174 Score=1580.13 Aligned_cols=868 Identities=72% Similarity=1.169 Sum_probs=750.3
Q ss_pred CccCCCcccccCCCCCCCCCCEEEEEeEEEEEEeccCCeEEEEEEEEeecCCccccCCchhhHHHHHHHHHHhhhhhcCC
Q 002661 26 EHVDLPRHSIMSRRGVGNCGRRISLLTNHFKVSVNTTDAVFYHYTVTISGEDKRIAKGKGIGRKVVDKLYQTYSAELAGK 105 (895)
Q Consensus 26 ~~~~~~~~~~~~RP~~Gt~G~~i~l~tN~f~i~~~~~~~~iy~YdV~i~~~~~~~v~~k~~~r~i~~~l~~~~~~~~~~~ 105 (895)
+....+++.+++||||||.|++|.|+||||+|.+..++..+|||||+|+++.++++.+++++++|+.++++++..++.+.
T Consensus 24 ~~~~~~~~~~~~RPg~Gt~G~~i~l~aN~f~v~~~~~~~~ly~Y~V~i~p~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 103 (900)
T PLN03202 24 KKPSKPKRLPMARRGFGSKGQKIQLLTNHFKVSVNNPDGHFFHYSVSLTYEDGRPVDGKGIGRKVIDKVQETYSSDLAGK 103 (900)
T ss_pred ccccccccccCCCCCCCCCCCEEEEEeeEEEEeccCCCCcEEEEEEEeccCCCCcccchhhhHHHHHHHHHhhHHhhCCC
Confidence 33456666889999999999999999999999976557789999999987654566667788999999988775556677
Q ss_pred ceEEeCCceeeecCCCCCCceEEEEEecccccccc--CCCCCCCCCC-CCCCCCCCCCCCCceEEEEEeeccccChHHHH
Q 002661 106 RFAYDGEKSLYTVGPLPQNKFEFTVVLEESRAKQQ--NGSPRGRDSP-IGPGKRSKHSFQSKTFMVEISFATKIPLRSIA 182 (895)
Q Consensus 106 ~~vyDG~~~lyS~~~Lp~~~~~~~v~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~I~~~~~i~~~~l~ 182 (895)
.+||||+++|||+.+||.+..++.|++.++...++ +++|++.+.| +++.+|.+...+.+.|+|+|+++++|++.+|.
T Consensus 104 ~~~~Dg~~~l~s~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~i~~~~L~ 183 (900)
T PLN03202 104 DFAYDGEKSLFTVGALPQNKLEFTVVLEDVSSNRNNGNGSPVGNGSPNGGDRKRSRRPYQSKTFKVEISFAAKIPMQAIA 183 (900)
T ss_pred ceeecCccceEECccCCCCCceEEEEecccccccccccccccccCCccccccccccccCCCceEEEEEEEccccCHHHHH
Confidence 89999999999999999877788887764311110 0111111111 11222222334578999999999999999999
Q ss_pred HHhcCCCCCChhHHHHHHHHHHhchhhhcCceecccccccCCCCCccccCCCeEEeecceEEEEecCCceeeeeecceee
Q 002661 183 LALKGNEVDNTQDALRVLDIVLRQQAANWGCLLVRQSFFHDDSRNLVDVGGGVSGIRGFHSSFRPTQGGLSLNMDVSTTM 262 (895)
Q Consensus 183 ~~l~g~~~~~~~~~iq~lniilr~~~~~~~~~~~gr~ff~~~~~~~~~l~~gle~~~Gf~~Sir~~~~gl~LniD~~~~~ 262 (895)
+||.|.......++||+||+|||+.++..++..+||+||.++.....++++|+|+|+||++|||+++++++||+|+++++
T Consensus 184 ~~l~~~~~~~~~~~iq~lnivlr~~~~~~~~~~~gr~ff~~~~~~~~~l~~gle~~~G~~~Svr~~~~~l~LnvDvs~~~ 263 (900)
T PLN03202 184 NALRGQESENSQDALRVLDIILRQHAAKQGCLLVRQSFFHNDPKNFVDLGGGVLGCRGFHSSFRTTQGGLSLNIDVSTTM 263 (900)
T ss_pred HHHcCCCCCCcHHHHHHHHHHHhhhhhhCCCceeccccCCCCCcccccCCCceEEeeeeeeEeeeccCceEEeeeeeeee
Confidence 99999877778899999999999998877788889999987655556789999999999999999999999999999999
Q ss_pred eeccccHHHHHHHhcCCCCCccccHHHHHhhccccEEEeccCCceEEEeecCCCCCCccccccccCCCCCCCCCCceeee
Q 002661 263 ILKPGPVIDFLIANQNVREPRFIDWTKAKKMLRNLRVKPRHRNMEFKIVGLSEKPCNQQFFPMKVKSTEGTNEGETLEIT 342 (895)
Q Consensus 263 F~~~~~l~d~l~~~~~~~~~~~~~~~~i~~~Lkgl~V~~~~~~r~~~I~~l~~~~a~~~~F~~~~~~~~g~~~~~g~~iS 342 (895)
|++++||+|+|.+..+.++....+|.+++++|+|++|.++|++++|+|.||++.++++.+|++++.+..|+ +++|++||
T Consensus 264 F~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~lkGl~V~t~~~~k~yrI~~i~~~~a~~~~F~~~~~~~~~~-~~~~~~iS 342 (900)
T PLN03202 264 IVQPGPVVDFLIANQNVRDPFQIDWSKAKRMLKNLRVKVSPSNQEYKITGLSEKPCKEQTFSLKQRNGNGN-EVETVEIT 342 (900)
T ss_pred eecCCcHHHHHHHhcCcCCccchhHHHHHHHhcCCEEEEecCCceEEEeeccCCCCcceEEEcccCCcccc-cCCcceEE
Confidence 99999999999987655443334677899999999999999999999999999999999998764332221 11246899
Q ss_pred HHHHHHHhcCcccccCC-CCcEEecCCCCCcccccccceEecccccccccCCHHHHHHHHHHhhCChHHHHHHHHHHHHh
Q 002661 343 VYDYFTQHCRIELTYSA-YLPCLDVGKPKRPNYLPLELCSLVSLQRYTKALSSMQRASLVEKSRQKPQDRMRTLTDALRS 421 (895)
Q Consensus 343 v~~Yf~~~Y~i~L~~~p-~lPlv~vg~~~~~~ylP~Elc~i~~~Q~~~~~l~~~q~~~~ik~~~~~P~~R~~~i~~~l~~ 421 (895)
|+|||+++|||+|+| | ++|||++|+.++++|||||||.|+|+|+++++|++.|+++||++|+.+|++|.+.|.++++.
T Consensus 343 v~dYfk~~Yni~l~~-p~~lPlv~~g~~~~~~ylP~ElC~i~~~Q~~~~~l~~~q~~~mik~a~~~P~~R~~~i~~~~~~ 421 (900)
T PLN03202 343 VYDYFVKHRGIELRY-SGDLPCINVGKPKRPTYFPIELCSLVSLQRYTKALSTLQRSSLVEKSRQKPQERMKVLTDALKS 421 (900)
T ss_pred HHHHHHHHcCccccC-CCCCCEEEcCCCCCCeEEcceeeEccCCceechhCCHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 999999999999999 7 99999999988899999999999999999999999999999999999999999999999999
Q ss_pred ccCCCccccceeeEEEccceeEeeeEEecCCceecCCccccCCCCCccccCCceeecccccceEEEEEeCCCccHHHHHH
Q 002661 422 YSYDEDPVLAACGISIGKQLTQVDGRILEIPKLKVGKSEDCIPRNGRWNFNNKRFLEATRIDRWIVVNFSARCDTSHISR 501 (895)
Q Consensus 422 ~~~~~~~~L~~~Gl~I~~~~~~v~arvL~~P~i~yg~~~~~~~~~g~Wn~~~~~f~~p~~l~~W~vv~~~~~~~~~~f~~ 501 (895)
++++.+++|++|||+|+.+|++|+||+|+||+|.||+++.+.|.+|+||+++++|++|+.+++|+++++....++++|++
T Consensus 422 ~~~~~~~~l~~fGi~i~~~~~~V~gRvL~~P~I~y~~~~~~~p~~g~Wn~~~~kf~~~~~l~~W~vv~~~~~~~~~~f~~ 501 (900)
T PLN03202 422 SNYDADPMLRSCGISISSQFTQVEGRVLPAPKLKVGNGEDFFPRNGRWNFNNKKLVEPTKIERWAVVNFSARCDIRHLVR 501 (900)
T ss_pred hCCCCchHHHHCCcEecCCceEEeEEEcCCceeecCCCcccCCCCCceecCCCEecCCCccceEEEEEecCchhHHHHHH
Confidence 88888899999999999999999999999999999987667788999999999999999999999998876667899999
Q ss_pred HHHHHhhccCeeccCCceeeeccccccCCCchhHHHHHHHHHHHhCCCCCeEEEEEcCCCCCCcchHHHHHHhhcccCce
Q 002661 502 ELINCGRNKGIHIERPFTLIEEDQQTRRGNPVVRVERMFELITEKLPGPPQFILCVLPERKNSDIYGPWKKKSLSDFGIA 581 (895)
Q Consensus 502 ~L~~~~~~~G~~i~~P~~v~~~~~~~~~~~~~~~le~~~~~i~~~~~~~~~lvlvIlp~~~~~~~Y~~iK~~~~~~~gV~ 581 (895)
.|.+.|+.+||.+.+|..+...++++......++++.+++.+++..+..++|+|||||++++.++|+.||++||++.||+
T Consensus 502 ~l~~~~~~~G~~i~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~qlv~vIlp~~~~~~~Y~~IK~~~~~~~gV~ 581 (900)
T PLN03202 502 DLIKCGEMKGINIEPPFDVFEENPQFRRAPPPVRVEKMFEQIQSKLPGPPQFLLCILPERKNSDIYGPWKKKNLSEFGIV 581 (900)
T ss_pred HHHHHHHHCCceeCCCccccccccccccccchHHHHHHHHHHHHhccCCCeEEEEEEcCCCCcchHHHHHHHHhhccCcc
Confidence 99999999999999886543333222222334678999999988766679999999997446889999999999999999
Q ss_pred eeeeeccccChhHHHHHHHHHHhccCCccccccccccccCCCccCCCeEEEEEEeecCCCCCCCCCeEEEEEeecCCCcc
Q 002661 582 TQCISPTKINDQYLTNVLLKINSKLGGINSLLALEQSSLIPLIKDTPTMILGMDVSHGSPGRSDIPSVAAVVGSQSWPLI 661 (895)
Q Consensus 582 TQci~~~~~~~q~~~Ni~lKiN~KlGG~n~~~~~~~~~~~p~~~~~~tmiiG~Dv~H~~~~~~~~pSi~avV~S~d~~~~ 661 (895)
||||..++.++|+++|||||||+||||+||.|+.+....+|++.+.+|||||+||+||++++.+.|||||+|||+|++.+
T Consensus 582 TQcv~~~~~~~q~~~NIalKiN~KLGG~n~~~~~~~~~~i~~~~~~~tMivG~DVtHp~~g~~~~pSiaa~VaS~d~~~~ 661 (900)
T PLN03202 582 TQCIAPTRVNDQYLTNVLLKINAKLGGLNSLLAIEHSPSIPLVSKVPTIILGMDVSHGSPGQSDVPSIAAVVSSRQWPLI 661 (900)
T ss_pred cEEeCccccchHHHHHHHHHHhhhhCCcceeecccccccCccccCCCeEEEEEEeecCCCCCCCCCceEEEEeccCcccc
Confidence 99998777899999999999999999999999765445678887889999999999999876557999999999997578
Q ss_pred ceeEEEEEeccCcceecccccccccCCChHHHHHHHHHHHHHHhCCCCCceEEEEeCCCCchhHHHHHHHHHHHHHHHHH
Q 002661 662 SRYRAAVRTQSSKVEMIDALYKPIANGNDDGIIRELLLDFYRTSKQRKPKQIIIFRDGVSESQFNQVLNIELEQIIKAYQ 741 (895)
Q Consensus 662 ~~y~~~~~~q~~~~e~i~~l~~~~~~~~~~~~~~~~l~~f~~~~~~~~P~~IIiyRDGvsegq~~~v~~~Ev~~i~~a~~ 741 (895)
++|++.+++|.+++|++++|.....+..+++|+.++|+.||+++++.+|++|||||||||||||++|+++|+++|++||+
T Consensus 662 ~~y~s~~~~Q~~~~E~i~~l~~~~~~~~~~~m~~~~L~~~~~~~~~~~P~~IiiyRDGVseGQ~~~Vl~~Ev~~i~~a~~ 741 (900)
T PLN03202 662 SRYRASVRTQSPKVEMIDSLFKPVGDKDDDGIIRELLLDFYTSSGKRKPEQIIIFRDGVSESQFNQVLNIELDQIIEACK 741 (900)
T ss_pred cceeeEEEecCCCceeeeehhccccccchHHHHHHHHHHHHHHcCCCCCceeEEEecCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988654444456789999999999987789999999999999999999999999999999999
Q ss_pred HhCCCCCCcEEEEEEeecccceeecCCCCCCCCCeeeeecccccCCcccEEeeeccCccccccCCeeEEEecCCCCChHH
Q 002661 742 HLGEADIPKFTVIVAQKNHHTKLFQASGPENVPPGTVVDTRIVHPRNYDFYMCAHAGMIGTSRPAHYHVLLDEIGFSPDD 821 (895)
Q Consensus 742 ~~~~~~~pkit~Ivv~Krh~~Rff~~~~~~N~~pGTvVD~~it~p~~~dFyL~sh~~~qGTarPt~Y~Vl~d~~~~~~d~ 821 (895)
+++++|+|+||||||+||||+|||+.+..+||+||||||++||+|..||||||||.++|||||||||+||+||+++++|+
T Consensus 742 ~~~~~~~Pkit~Ivv~Krh~tRff~~~~~~N~~pGTvVD~~it~p~~~dFyL~Sh~~~qGTarPthY~Vl~de~~~~~d~ 821 (900)
T PLN03202 742 FLDESWSPKFTVIVAQKNHHTKFFQAGSPDNVPPGTVVDNKICHPRNNDFYMCAHAGMIGTTRPTHYHVLLDEIGFSADD 821 (900)
T ss_pred HhCCCCCCcEEEEEEeccceeeeeccCCCCCCCCceEeccccccCCcceEEEecccccccCCcCceEEEEECCCCCCHHH
Confidence 99889999999999999999999998777999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcccccccCCccccchhHHHHHHHHhhcccccccCCCCCcc-----cCCCCCCCCCCccccccCCCCeeeC
Q 002661 822 LQNLIHSLSYVYQRSTTAISIVAPICYAHLAASQMGQFIKFEDSSDTSI-----TSAGSVPVPELPRLHKNVESSMFFC 895 (895)
Q Consensus 822 lq~lt~~Lc~~y~~~~~~vsiPaP~~yA~~~a~r~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~M~~~ 895 (895)
||+|||+|||+|+|||++|||||||||||++|+|||+||++++.+++++ +++++.+..++.+||++++++||||
T Consensus 822 lq~lty~lc~~y~~~t~~VsvpaP~yYAhlla~r~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~Mfy~ 900 (900)
T PLN03202 822 LQELVHSLSYVYQRSTTAISVVAPVCYAHLAAAQMGQFMKFEDMSETSSSHGGITSAGAVPVPELPRLHENVASSMFFC 900 (900)
T ss_pred HHHHHHHHhhhhcccCCceecchhHHHHHHHHHHhhhhccccCCccccccccccCCCCccccccccccchhhcCCeeeC
Confidence 9999999999999999999999999999999999999998764322211 1122233446778999999999998
No 2
>KOG1041 consensus Translation initiation factor 2C (eIF-2C) and related proteins [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.2e-140 Score=1268.80 Aligned_cols=801 Identities=39% Similarity=0.596 Sum_probs=683.9
Q ss_pred ccccCCCCCCCCCCEEEEEeEEEEEEeccCCeE-EEEEEEEeecCCccccCCchhhH-HHHHHHHHHhh-hhhcCCceEE
Q 002661 33 HSIMSRRGVGNCGRRISLLTNHFKVSVNTTDAV-FYHYTVTISGEDKRIAKGKGIGR-KVVDKLYQTYS-AELAGKRFAY 109 (895)
Q Consensus 33 ~~~~~RP~~Gt~G~~i~l~tN~f~i~~~~~~~~-iy~YdV~i~~~~~~~v~~k~~~r-~i~~~l~~~~~-~~~~~~~~vy 109 (895)
..++.||+.|+.|+.|.|.||||.++++.+... ++||+|++.+ +..++..++ .+++.+..... ..+.+..++|
T Consensus 43 ~~~~~rp~~~~~g~~i~~~~n~f~~~~~~~~~~~~~~y~v~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y 118 (876)
T KOG1041|consen 43 RFPMNRPGGGTKGKKIMVLVNHFKVDLKFTEESLFVHYSVGIFN----EHGRRKVQCLRFFLDKVKNPELFELKSGGPAY 118 (876)
T ss_pred cccccCCCCCccceEEEEeeeEEEeccccCCcceEEEeeeeecC----CCCchHHHHHHHHHHHHhccccccccCCcccc
Confidence 678899999999999999999999887655555 8999999954 434445554 55555544432 3355667779
Q ss_pred eCCceeeecCCCCC--CceEEEEEeccccccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEEeeccccChHHHHHHhcC
Q 002661 110 DGEKSLYTVGPLPQ--NKFEFTVVLEESRAKQQNGSPRGRDSPIGPGKRSKHSFQSKTFMVEISFATKIPLRSIALALKG 187 (895)
Q Consensus 110 DG~~~lyS~~~Lp~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~~~~~i~~~~l~~~l~g 187 (895)
||+++|||..+|+. ....+.+..++. ...|++.|+++..+.+..+..++.+
T Consensus 119 Dg~~~lyt~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~ik~~~~~~~~~~~~~~~~ 171 (876)
T KOG1041|consen 119 DGQKTLYTKLELPEGVVTLDFDVISPKE---------------------------WKKFKVSIKKVSEVVLTKLNGFIYT 171 (876)
T ss_pred cCCceeEeccccccccceEEEEecCCCC---------------------------CcceEEEEEecccccccCccccccC
Confidence 99999999888884 333444443321 1129999999999999888888888
Q ss_pred CCCCChhHHHHHHHHHHhchhhhcCceecccccccCCCCCccccCCCeEEeecceEEEEecCCceeeeeecceeeeeccc
Q 002661 188 NEVDNTQDALRVLDIVLRQQAANWGCLLVRQSFFHDDSRNLVDVGGGVSGIRGFHSSFRPTQGGLSLNMDVSTTMILKPG 267 (895)
Q Consensus 188 ~~~~~~~~~iq~lniilr~~~~~~~~~~~gr~ff~~~~~~~~~l~~gle~~~Gf~~Sir~~~~gl~LniD~~~~~F~~~~ 267 (895)
.....+.+++|++++++++.+...++...|++||.........+++|.|+|.||++|+|+++++++||+|+++++|++++
T Consensus 172 ~~~~~~~~~~~~ld~~~~~~~s~~~~~~~~~sff~~~~~~~~~l~~g~e~~~Gf~~s~r~~~~~~~l~id~~~~~F~k~~ 251 (876)
T KOG1041|consen 172 RGENAPRDANQTLDVVLREIATSQGLNNVGYSFFGNDTREPAKLGGGVEIWEGFHKSIRPTQGGLSLNIDVKTTAFYKGT 251 (876)
T ss_pred ccccCchhHHHHHHHHHHhhhchhcccccchheecCCCCCccccCCCceeeeeeeeeeeeccCceEEeeeeeeeeeecCc
Confidence 77777899999999999999987778899999998633333458999999999999999999999999999999999999
Q ss_pred cHHHHHHHhcCCCC-CccccHH-HHHhhccccEEEeccC--CceEEEeecCCCCCCccccccccCCCCCCCCCCceeeeH
Q 002661 268 PVIDFLIANQNVRE-PRFIDWT-KAKKMLRNLRVKPRHR--NMEFKIVGLSEKPCNQQFFPMKVKSTEGTNEGETLEITV 343 (895)
Q Consensus 268 ~l~d~l~~~~~~~~-~~~~~~~-~i~~~Lkgl~V~~~~~--~r~~~I~~l~~~~a~~~~F~~~~~~~~g~~~~~g~~iSv 343 (895)
+|++++.......+ ....++. .++++|+||+|.++|+ +|.|+|.+++..++.+.+|++++.+ +.++||
T Consensus 252 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~lkgL~v~~~h~~~~r~~~i~~l~~~~a~~~~F~l~~~~--------~~~~tV 323 (876)
T KOG1041|consen 252 PVIEFLKKILEIKTRAFHKDRPLDIKKALKGLKVYVTHGKRKRKIKIMGLSKKPAKNTTFELKDKK--------GREITV 323 (876)
T ss_pred chHHHHHhhhcCcccccccccchhHHHHhhCcEEEEecccCcceEEEecccCCcccCceeeccCCC--------ceEEeH
Confidence 99999998665442 1111222 3899999999999994 5889999999999999999977532 369999
Q ss_pred HHHHHHhcCcccccCCCCcEEecCCCCCcccccccceEecccccccc-cCCHHHHHHHHHHhhCChHHHHHHHHHHHHhc
Q 002661 344 YDYFTQHCRIELTYSAYLPCLDVGKPKRPNYLPLELCSLVSLQRYTK-ALSSMQRASLVEKSRQKPQDRMRTLTDALRSY 422 (895)
Q Consensus 344 ~~Yf~~~Y~i~L~~~p~lPlv~vg~~~~~~ylP~Elc~i~~~Q~~~~-~l~~~q~~~~ik~~~~~P~~R~~~i~~~l~~~ 422 (895)
+|||+++||++|+| |++|||++|+.++..|||||||.|++||++.+ +|++.|+++|++.+++.|++|.+.|.++++..
T Consensus 324 ~~Yf~~ky~~~Lky-p~LPcv~v~~~~~~~~~PmElc~i~~gQr~~k~kl~~~q~~~m~k~~~~~P~~R~~~i~~~~~~~ 402 (876)
T KOG1041|consen 324 ADYFLEKYNITLKY-PDLPCVVVKRPKRENFYPMELCNIVPGQRITKEKLTPNQQSAMIKASAVKPDQRQKLIKKVLKSS 402 (876)
T ss_pred HHHHHHhcCccccC-CCCccEeecCCCCCcccchhheecccCceeecccCCHHHHHHhhhhhcCCHHHHHHHHHHHHHHh
Confidence 99999999999999 99999999999999999999999999999998 89999999999999999999999999999998
Q ss_pred cCCCccccceeeEEEccceeEeeeEEecCCceecCCc-cccCCCCCccccCCceeecccccceEEEEEeCCCccH--HHH
Q 002661 423 SYDEDPVLAACGISIGKQLTQVDGRILEIPKLKVGKS-EDCIPRNGRWNFNNKRFLEATRIDRWIVVNFSARCDT--SHI 499 (895)
Q Consensus 423 ~~~~~~~L~~~Gl~I~~~~~~v~arvL~~P~i~yg~~-~~~~~~~g~Wn~~~~~f~~p~~l~~W~vv~~~~~~~~--~~f 499 (895)
++..+++|++|||.|.++|+.|+||+|+||.|.|+++ ....|..|.|++++++|+.|+.+..|+|++|....+. +.|
T Consensus 403 ~~~~d~~l~~fGi~i~~~~~~v~grvL~~P~L~~~~~~~~~~p~~g~~~~~~k~~~~~~~i~~wavv~f~~~~~~~~~~f 482 (876)
T KOG1041|consen 403 LKLSNPYLKEFGIIVVSEPTQVEGRVLPPPKLKFGGNEMPKNPTPGTWFMRNKKFVKPAKIKSWAVVNFSNSETLRQKQF 482 (876)
T ss_pred ccccchhHHhcCeEEecccccccccccCCceeeccCCCCccCCCcCccccccCcccccceEEEEEEEEecccccccHHHH
Confidence 8877999999999999999999999999999999987 3456788999999999999999999999999876532 689
Q ss_pred HHHHHHHhhccCeeccCCceeeeccccccCCCchhHHHHHHHHHHHhCC--CCCeEEEEEcCCCCCCcchHHHHHHhhcc
Q 002661 500 SRELINCGRNKGIHIERPFTLIEEDQQTRRGNPVVRVERMFELITEKLP--GPPQFILCVLPERKNSDIYGPWKKKSLSD 577 (895)
Q Consensus 500 ~~~L~~~~~~~G~~i~~P~~v~~~~~~~~~~~~~~~le~~~~~i~~~~~--~~~~lvlvIlp~~~~~~~Y~~iK~~~~~~ 577 (895)
++.|.+.|+..||.|..|. .. ...+.+++.++..++...+ ..+++++||+++ +..++|..+|++++..
T Consensus 483 ~~~L~~~c~~~Gm~i~~~~-~~--------~~~~~~~~~~~~~~~~~~~~~~~~~li~~I~~~-k~~~vy~~lK~~e~t~ 552 (876)
T KOG1041|consen 483 VDELIKICKDKGMEIKRPR-KW--------APTEESLEDMITEKSSMEKAAAGVQLVFIILPE-KNPDVHDELKYIEETV 552 (876)
T ss_pred HHHHHHHHHHcCccccccc-cc--------CcccchhHHHHHHHHhhhccCCCceEEEEEECC-CCcchhHHHHHHHHHh
Confidence 9999999999999997532 11 1122467777776665442 468999999998 7789999999999999
Q ss_pred cCceeeeeecc---ccChhHHHHHHHHHHhccCCccccccccccccCCCccCCCeEEEEEEeecCCCCCCC--CCeEEEE
Q 002661 578 FGIATQCISPT---KINDQYLTNVLLKINSKLGGINSLLALEQSSLIPLIKDTPTMILGMDVSHGSPGRSD--IPSVAAV 652 (895)
Q Consensus 578 ~gV~TQci~~~---~~~~q~~~Ni~lKiN~KlGG~n~~~~~~~~~~~p~~~~~~tmiiG~Dv~H~~~~~~~--~pSi~av 652 (895)
.||+|||+..+ +..+|+++||++|||+||||+|+.+..+.....| ....+|||||+||+||+++... .||||||
T Consensus 553 ~gi~tQc~~~~~~~k~~~qtl~Nl~lKiN~KlGG~N~~l~~~~~~~~~-~~~~ptl~IG~dVsHp~~~~~~~~~PSiagv 631 (876)
T KOG1041|consen 553 GGLTTQCIRPTTAKKMSPQTLANLILKINVKLGGLNYVLVSPRSSRGP-KLDSPTLFIGFDVSHPAAGTSFDGNPSIVGV 631 (876)
T ss_pred cCceeEEeecchhcccchHHHHHHHHHHhhccCceeeEEecccccCcc-cCCCCeEEEEEeeeCCCcCCCcCCCccEEEE
Confidence 99999999975 4568999999999999999999988765433333 4568999999999999988765 4999999
Q ss_pred EeecCCCccceeEEEEEeccCcceecccccccccCCChHHHHHHHHHHHHHHhCCCCCceEEEEeCCCCchhHHHHHHHH
Q 002661 653 VGSQSWPLISRYRAAVRTQSSKVEMIDALYKPIANGNDDGIIRELLLDFYRTSKQRKPKQIIIFRDGVSESQFNQVLNIE 732 (895)
Q Consensus 653 V~S~d~~~~~~y~~~~~~q~~~~e~i~~l~~~~~~~~~~~~~~~~l~~f~~~~~~~~P~~IIiyRDGvsegq~~~v~~~E 732 (895)
|+|+|| +.++|.+.+++|.+++|.|+++ ++|+.++|..|++. ++.+|++|||||||||||||.+|+++|
T Consensus 632 v~s~~~-~~~~y~g~~~~Q~~r~e~i~~~---------~~~~~~~l~~f~~~-t~~~P~~IIiyRdGvSEgqf~~vl~~E 700 (876)
T KOG1041|consen 632 VYNLDW-HPQKFAGFVRFQKSRQEVIQDL---------GEMIRELLRSFRKS-TRKLPDRIVIYRDGVSEGQFSMVLEEE 700 (876)
T ss_pred Eecccc-cchhhcceEEEecCChhhhcch---------HHHHHHHHHHHHHh-ccCCCceEEEEecCCccchHHHHHHHH
Confidence 999998 7899999999999999999883 46999999999876 457999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCcEEEEEEeecccceeecCCCC-------CCCCCeeeeecccccCCcccEEeeeccCccccccC
Q 002661 733 LEQIIKAYQHLGEADIPKFTVIVAQKNHHTKLFQASGP-------ENVPPGTVVDTRIVHPRNYDFYMCAHAGMIGTSRP 805 (895)
Q Consensus 733 v~~i~~a~~~~~~~~~pkit~Ivv~Krh~~Rff~~~~~-------~N~~pGTvVD~~it~p~~~dFyL~sh~~~qGTarP 805 (895)
+.+|++||..+.++|+|+||||||+||||+|||+.+.. .|++|||+||+.||||.++||||+||.++|||+||
T Consensus 701 ~~~ir~a~~~~~~~y~P~it~Iv~qKrHhtR~F~~~~~~~~~~~~~Nv~pGT~VD~~It~p~~~dFyL~sh~g~qGTsrp 780 (876)
T KOG1041|consen 701 LRAIKEACKKLQEGYNPKITVIVAQKRHHTRLFAAELSKDGKAQSQNVPPGTVVDTTITSPGYFDFYLCSHHGLQGTSKP 780 (876)
T ss_pred HHHHHHHHHHhCCCCCCceEEEEEEcccceeeecccCCCCccCCccCCCCCCEecccccCCCcceEEEeccCcccccccC
Confidence 99999999999999999999999999999999987654 59999999999999999999999999999999999
Q ss_pred CeeEEEecCCCCChHHHHHHHHHhhcccccccCCccccchhHHHHHHHHhhccccc--ccCCCCCcc-cC-CCCC--CCC
Q 002661 806 AHYHVLLDEIGFSPDDLQNLIHSLSYVYQRSTTAISIVAPICYAHLAASQMGQFIK--FEDSSDTSI-TS-AGSV--PVP 879 (895)
Q Consensus 806 t~Y~Vl~d~~~~~~d~lq~lt~~Lc~~y~~~~~~vsiPaP~~yA~~~a~r~~~~~~--~~~~~~~~~-~~-~~~~--~~~ 879 (895)
+||+||+||+++++|+||+|||.|||+|++|++|||||+|+||||++|+|||.+.+ ..+.+.+.+ .+ .+.. .++
T Consensus 781 ~~Y~VL~dd~~~~~d~lq~lt~~Lc~~~qr~t~pvSiP~P~YyA~~~A~Rgr~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 860 (876)
T KOG1041|consen 781 THYTVLYDDIGFSKDELQKLTYALCFTHQRCTKPVSLPAPLYYAHEVAKRGRNNYKEHLREKNSSAIYQSIVDLDALNSE 860 (876)
T ss_pred ceEEEEeCCCCCCHHHHHHHHHHHhhheeeecCCCcCCchHHHHHHHHHHhhhhhhhhccccCCCcccccccccchhhhh
Confidence 99999999999999999999999999999999999999999999999999999831 111111111 11 1111 234
Q ss_pred CCccccccCCCCeeeC
Q 002661 880 ELPRLHKNVESSMFFC 895 (895)
Q Consensus 880 ~~~~~~~~~~~~M~~~ 895 (895)
...++|.++..+||||
T Consensus 861 ~~~~~~~~~~~~~f~a 876 (876)
T KOG1041|consen 861 EGYKEKAGLFGTRFNA 876 (876)
T ss_pred hHHHhhhcccceEEeC
Confidence 5678999999999997
No 3
>KOG1042 consensus Germ-line stem cell division protein Hiwi/Piwi; negative developmental regulator [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=1.7e-131 Score=1075.89 Aligned_cols=714 Identities=26% Similarity=0.435 Sum_probs=624.7
Q ss_pred CCCCCCCEEEEEeEEEEEEeccCCeEEEEEEEEeecCCccccCCchhhHHHHHHHHHHhhhhhcCCceEEeCCceeeecC
Q 002661 40 GVGNCGRRISLLTNHFKVSVNTTDAVFYHYTVTISGEDKRIAKGKGIGRKVVDKLYQTYSAELAGKRFAYDGEKSLYTVG 119 (895)
Q Consensus 40 ~~Gt~G~~i~l~tN~f~i~~~~~~~~iy~YdV~i~~~~~~~v~~k~~~r~i~~~l~~~~~~~~~~~~~vyDG~~~lyS~~ 119 (895)
..|+.|.+|+|.||||++.. .+++.||||||+| .|.++.++++++++..+ ++.-|...+|||. +||.+.
T Consensus 87 KtGssG~pv~l~tN~f~l~t-~p~w~iyqYhVef----~P~ves~rlR~~~L~~h-----~~lig~~~~FDG~-iLfl~~ 155 (845)
T KOG1042|consen 87 KTGSSGIPVKLQTNFFRLMT-RPDWSIYQYHVEF----EPDVESRRLREALLYNH-----TDLIGKGYAFDGT-ILFLKE 155 (845)
T ss_pred ccCCCCceEEEEeceeeecc-CCCcEEEEEEEee----ccccccHHHHHHHHHHh-----Hhhhccceeecce-eehhhH
Confidence 66999999999999999875 5799999999999 57888888887777654 3345788999998 999999
Q ss_pred CCCCCceEEEEEeccccccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEEeeccccChHHHHHHhcCCCCCChhHHHHH
Q 002661 120 PLPQNKFEFTVVLEESRAKQQNGSPRGRDSPIGPGKRSKHSFQSKTFMVEISFATKIPLRSIALALKGNEVDNTQDALRV 199 (895)
Q Consensus 120 ~Lp~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~~~~~i~~~~l~~~l~g~~~~~~~~~iq~ 199 (895)
++..+-.+.. + ..+.+..++|+|++++++.. ...++||+
T Consensus 156 k~eq~~tel~------~----------------------ks~~ge~i~I~ik~~~~~~~-------------t~p~~iqv 194 (845)
T KOG1042|consen 156 KFEQKQTELV------S----------------------KSRDGELIKITIKLTNELPS-------------TDPQCIQV 194 (845)
T ss_pred HHhhhhheee------c----------------------ccCCCceEEEEEEEeccccC-------------CChhHHHH
Confidence 9986543221 0 02356789999999999875 34589999
Q ss_pred HHHHHhchhhhcCceecccccccCCCCCcccc-CCCeEEeecceEEEEecCCceeeeeecceeeeeccccHHHHHHHhcC
Q 002661 200 LDIVLRQQAANWGCLLVRQSFFHDDSRNLVDV-GGGVSGIRGFHSSFRPTQGGLSLNMDVSTTMILKPGPVIDFLIANQN 278 (895)
Q Consensus 200 lniilr~~~~~~~~~~~gr~ff~~~~~~~~~l-~~gle~~~Gf~~Sir~~~~gl~LniD~~~~~F~~~~~l~d~l~~~~~ 278 (895)
+|+|||..+..+++.++||+||++.... ++ ...+++|+||.+|||..+..++|+.|++|++ .+..|++|+|.++.+
T Consensus 195 ~NlI~RR~~k~L~L~qigRnyynp~~~i--~ip~~km~lwPGy~tSIrq~E~~illctei~hKv-mR~ETvy~~m~~~~~ 271 (845)
T KOG1042|consen 195 FNLILRRSMKGLNLTQIGRNYYDPRAKI--EIPEFKMSLWPGYETSIRQHENDILLCTEISHKV-MRTETVYDIMRSCQH 271 (845)
T ss_pred HHHHHHHHHhhccHHHhhhccCCCCccc--ccccccceecCcchhHHHHhhhceeeehhhhhhH-hhhhHHHHHHHHHhh
Confidence 9999999998888999999999986543 34 5689999999999999999999999999998 899999999988654
Q ss_pred CCCCccccHHHHHhhccccEEEeccCCceEEEeecCCCCCCccccccccCCCCCCCCCCceeeeHHHHHHHhcCcccccC
Q 002661 279 VREPRFIDWTKAKKMLRNLRVKPRHRNMEFKIVGLSEKPCNQQFFPMKVKSTEGTNEGETLEITVYDYFTQHCRIELTYS 358 (895)
Q Consensus 279 ~~~~~~~~~~~i~~~Lkgl~V~~~~~~r~~~I~~l~~~~a~~~~F~~~~~~~~g~~~~~g~~iSv~~Yf~~~Y~i~L~~~ 358 (895)
. +.. ..+++++.+.|+.|.|.||||+|+|+++++...+.++|..++ .+||+.|||+++|||+|++
T Consensus 272 ~--~~~-~qe~~~~~~~glivLT~YNNktyriddvD~~~tP~stF~k~d-----------geIs~veYyk~qYni~I~d- 336 (845)
T KOG1042|consen 272 N--TQR-FQETVNKNVIGLIVLTRYNNKTYRIDDVDFSQTPLSTFKKDD-----------GEISFVEYYKKQYNIEITD- 336 (845)
T ss_pred C--HHH-HHHHHHHHhcceEEEEecCCceeeeeccccCcCccceeeecC-----------ceeeHhHHHHHhcCeEEee-
Confidence 2 221 456899999999999999999999999999999999997654 4999999999999999999
Q ss_pred CCCcEEecCC--------CCCcccccccceEecccccccccCCHHHHH------HHHHHhhCChHHHHHHHHHHHHhccC
Q 002661 359 AYLPCLDVGK--------PKRPNYLPLELCSLVSLQRYTKALSSMQRA------SLVEKSRQKPQDRMRTLTDALRSYSY 424 (895)
Q Consensus 359 p~lPlv~vg~--------~~~~~ylP~Elc~i~~~Q~~~~~l~~~q~~------~~ik~~~~~P~~R~~~i~~~l~~~~~ 424 (895)
-+||++.... ..+.++++||||+++| |+|+|++ +|.+++++.|++|...+..++..+..
T Consensus 337 l~QPlliS~~k~K~~~g~~~q~~~lIPELc~~TG-------Ltd~mr~dF~~Mkama~hTRlsP~qR~~rlr~li~~l~~ 409 (845)
T KOG1042|consen 337 LNQPLLISEPKDKRPKGEPPQLAMLIPELCFLTG-------LTDEMRSDFQLMKAMAEHTRLSPQQRQDRLRRLIDRLQK 409 (845)
T ss_pred CCcceEeccCcccCCCCCCccceeeehhhhhccC-------CcHHHHhhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Confidence 9999997632 2235799999999997 7787776 58899999999999999999888754
Q ss_pred C--CccccceeeEEEccceeEeeeEEecCCceecCCccc-cCCCCCccc--cCCceeecccccceEEEEEeCCCc-cHHH
Q 002661 425 D--EDPVLAACGISIGKQLTQVDGRILEIPKLKVGKSED-CIPRNGRWN--FNNKRFLEATRIDRWIVVNFSARC-DTSH 498 (895)
Q Consensus 425 ~--~~~~L~~~Gl~I~~~~~~v~arvL~~P~i~yg~~~~-~~~~~g~Wn--~~~~~f~~p~~l~~W~vv~~~~~~-~~~~ 498 (895)
+ ....|+.|||+++.+.++|+||+|++.+|.+|+.+. ..++.+.|. ++...++....+++|++++..... .++.
T Consensus 410 n~~~~~~lr~Wgi~ld~~l~~v~gRil~sEkI~~~~~~~~~~~~~ADWsr~~R~c~i~~~~~l~~W~vi~p~r~~~~a~~ 489 (845)
T KOG1042|consen 410 NPNSVEELRDWGISLDSNLAEVQGRILPSEKILFGNQKVPYEGKQADWSREFRTCGILRGSNLDNWAVIYPGRNNSEAQE 489 (845)
T ss_pred ChHHHHHHHhcCcccCcchhhccceecCccceecCCcccCCCcchhhhhhhcccccccccCCCcceEEEecCccHHHHHH
Confidence 3 346799999999999999999999999999998653 334568897 677788899999999999876543 6999
Q ss_pred HHHHHHHHhhccCeeccCCceeeeccccccCCCchhHHHHHHHHHHHhCCCCCeEEEEEcCCCCCCcchHHHHHHhhccc
Q 002661 499 ISRELINCGRNKGIHIERPFTLIEEDQQTRRGNPVVRVERMFELITEKLPGPPQFILCVLPERKNSDIYGPWKKKSLSDF 578 (895)
Q Consensus 499 f~~~L~~~~~~~G~~i~~P~~v~~~~~~~~~~~~~~~le~~~~~i~~~~~~~~~lvlvIlp~~~~~~~Y~~iK~~~~~~~ 578 (895)
|++.|.+.+..+||++.+|..+.+.+ ++.+.+++.|.+....++++|+||+|+ .+.+.|+.||+++|++.
T Consensus 490 fi~~l~r~a~~mgm~i~~P~~v~i~d---------dr~~tYvraiqq~v~~D~qmvvcil~~-~nk~~Y~sIKK~~cvd~ 559 (845)
T KOG1042|consen 490 FINMLRRVASSMGMQIREPICVEIKD---------DRPGTYVRAIQQVVGADIQMVVCILPS-DNKTRYDSIKKYLCVDC 559 (845)
T ss_pred HHHHHHHhccccceecCCceEEEeCC---------CChHHHHHHHHHhccCCceEEEEEecC-CchhhHHHHHhheeccC
Confidence 99999999999999999999876542 446778888888877889999999998 77899999999999999
Q ss_pred CceeeeeeccccCh-h----HHHHHHHHHHhccCCccccccccccccCCCccCCCeEEEEEEeecCCCCCCCCCeEEEEE
Q 002661 579 GIATQCISPTKIND-Q----YLTNVLLKINSKLGGINSLLALEQSSLIPLIKDTPTMILGMDVSHGSPGRSDIPSVAAVV 653 (895)
Q Consensus 579 gV~TQci~~~~~~~-q----~~~Ni~lKiN~KlGG~n~~~~~~~~~~~p~~~~~~tmiiG~Dv~H~~~~~~~~pSi~avV 653 (895)
+||||||+.++++. + ..++|++||||||||..|.++ +|+ +.+||||+||+|.+.. ...|++|+|
T Consensus 560 pvPsQ~V~lrTl~~~~~lmSIAtKI~lQmnCKlGg~lW~V~------IPL---k~lMiVG~Dv~hd~~~--k~rsvga~V 628 (845)
T KOG1042|consen 560 PVPSQCVNLRTLAKRSKLMSIATKIALQMNCKLGGELWKVE------IPL---KGLMIVGFDVYHDPTL--KGRSVGAFV 628 (845)
T ss_pred CCccceEEEEeecCcchhHHHHHHHHHHHhhhhcCcceEEe------eec---ccceEEEEEeecCccc--cCceEEEEE
Confidence 99999999876543 2 458999999999999999985 564 7899999999998643 467999999
Q ss_pred eecCCCccceeEEEEEeccCcceecccccccccCCChHHHHHHHHHHHHHHhCCCCCceEEEEeCCCCchhHHHHHHHHH
Q 002661 654 GSQSWPLISRYRAAVRTQSSKVEMIDALYKPIANGNDDGIIRELLLDFYRTSKQRKPKQIIIFRDGVSESQFNQVLNIEL 733 (895)
Q Consensus 654 ~S~d~~~~~~y~~~~~~q~~~~e~i~~l~~~~~~~~~~~~~~~~l~~f~~~~~~~~P~~IIiyRDGvsegq~~~v~~~Ev 733 (895)
||+|. .+++|+|.+..|..++|+.+.|. -++..+|++||+.+ ..+|+|||+||||||+||++++.+.||
T Consensus 629 As~n~-~~tr~fS~v~~~~~~qel~d~L~---------~~~~~ALr~y~~~n-~~LPsRIi~YRDGVgDGQLk~l~n~EV 697 (845)
T KOG1042|consen 629 ASMNN-DFTRWFSRVIEQENGQELADNLK---------VFLAKALRQYYEVN-RTLPSRIIVYRDGVGDGQLKTLVNYEV 697 (845)
T ss_pred Eeecc-chhhhhhheecccCHHHHHHHHH---------HHHHHHHHHHHHhc-ccCCceEEEEecCCCCcccceeeeecc
Confidence 99994 89999999999999999988864 48999999999875 599999999999999999999999999
Q ss_pred H----HHHHHHHHhCCCCCCcEEEEEEeecccceeecCCC--CCCCCCeeeeecccccCCcccEEeeeccCccccccCCe
Q 002661 734 E----QIIKAYQHLGEADIPKFTVIVAQKNHHTKLFQASG--PENVPPGTVVDTRIVHPRNYDFYMCAHAGMIGTSRPAH 807 (895)
Q Consensus 734 ~----~i~~a~~~~~~~~~pkit~Ivv~Krh~~Rff~~~~--~~N~~pGTvVD~~it~p~~~dFyL~sh~~~qGTarPt~ 807 (895)
+ ++.+.+++++.+++|+++||||+||.++|||.... ..||+||||||++||.|.++||||+||.+.|||..|||
T Consensus 698 ~~~~dql~~~~a~~~~~~~~rl~~iVV~KrvntR~f~~~~~~~~NP~PGTVVD~~iT~pEryDFyLvsQ~VrqGtvsPTs 777 (845)
T KOG1042|consen 698 PLVCDQLLDCYAELSNKEKPRLAVIVVTKRVNTRFFLQGSSNAQNPPPGTVVDDTITRPERYDFYLVSQAVRQGTVSPTS 777 (845)
T ss_pred chHHHHHHHHHHHhcCCCCCcEEEEEEEeeccHHHHhhCCccccCCCCCceecceecccceeeeEeehhhhhcCCcCCce
Confidence 9 77777888888899999999999999999998764 37999999999999999999999999999999999999
Q ss_pred eEEEecCCCCChHHHHHHHHHhhcccccccCCccccchhHHHHHHHHhhcccccc
Q 002661 808 YHVLLDEIGFSPDDLQNLIHSLSYVYQRSTTAISIVAPICYAHLAASQMGQFIKF 862 (895)
Q Consensus 808 Y~Vl~d~~~~~~d~lq~lt~~Lc~~y~~~~~~vsiPaP~~yA~~~a~r~~~~~~~ 862 (895)
|.|+||++++++|.+|+|||.|||+|+||.++|++||||+||||||......|+.
T Consensus 778 Ynvi~d~~gL~PDkmQrLtfKlCHlYyNW~GtiRVPApCqYAHKLAfLv~qslH~ 832 (845)
T KOG1042|consen 778 YNVIYDDMGLSPDKMQRLTFKLCHLYYNWPGTIRVPAPCQYAHKLAFLVAQSLHR 832 (845)
T ss_pred EEEEecCCCCCHHHHHHHHHHHhheeecCCcceeccchhHHHHHHHHHHHhhhhh
Confidence 9999999999999999999999999999999999999999999999999998863
No 4
>cd04657 Piwi_ago-like Piwi_ago-like: PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing.
Probab=100.00 E-value=4.5e-97 Score=843.13 Aligned_cols=407 Identities=48% Similarity=0.796 Sum_probs=366.0
Q ss_pred cccceeeEEEccceeEeeeEEecCCceecCCc-cccCCCCCccccCCceeecccccceEEEEEeCCCc-------cHHHH
Q 002661 428 PVLAACGISIGKQLTQVDGRILEIPKLKVGKS-EDCIPRNGRWNFNNKRFLEATRIDRWIVVNFSARC-------DTSHI 499 (895)
Q Consensus 428 ~~L~~~Gl~I~~~~~~v~arvL~~P~i~yg~~-~~~~~~~g~Wn~~~~~f~~p~~l~~W~vv~~~~~~-------~~~~f 499 (895)
++|++|||+|+.+|++|+||+|+||+|.|+++ ....+.+|+|++++++|++|+.+++|+++++.... +++.|
T Consensus 1 ~~l~~fGi~i~~~~~~v~grvL~~P~i~y~~~~~~~~~~~g~W~~~~~~f~~~~~~~~W~vi~~~~~~~~~~~~~~~~~F 80 (426)
T cd04657 1 PYLKEFGISVSKEMITVPGRVLPPPKLKYGDSSKTVPPRNGSWNLRGKKFLEGGPIRSWAVLNFAGPRRSREERADLRNF 80 (426)
T ss_pred ChhHhCCCEecCCeeEEeEEEcCCceeeccCCccccCCCCCceeecCcccCCCcccceEEEEEecCccccchhHHHHHHH
Confidence 46899999999999999999999999999954 44567899999999999999999999999987531 48899
Q ss_pred HHHHHHHhhccCeeccCCceeeeccccccCCCchhHHHHHHHHHHHhCCCCCeEEEEEcCCCCCCcchHHHHHHhhcccC
Q 002661 500 SRELINCGRNKGIHIERPFTLIEEDQQTRRGNPVVRVERMFELITEKLPGPPQFILCVLPERKNSDIYGPWKKKSLSDFG 579 (895)
Q Consensus 500 ~~~L~~~~~~~G~~i~~P~~v~~~~~~~~~~~~~~~le~~~~~i~~~~~~~~~lvlvIlp~~~~~~~Y~~iK~~~~~~~g 579 (895)
++.|.+.|+.+||.+. . .+. ...+.++.+++.+++..+..++|+|||+|+ ++.++|+.||++|+.+.|
T Consensus 81 ~~~l~~~~~~~g~~~~-~-~~~---------~~~~~~~~~~~~~~~~~~~~~~lv~~ilp~-~~~~~Y~~iK~~~~~~~g 148 (426)
T cd04657 81 VDQLVKTVIGAGINIT-T-AIA---------SVEGRVEELFAKLKQAKGEGPQLVLVILPK-KDSDIYGRIKRLADTELG 148 (426)
T ss_pred HHHHHHHHHhcCCccc-c-ccc---------ccchhHHHHHHHHHhhccCCCCEEEEEEcC-CCcchHHHHHHHHhhcCC
Confidence 9999999999999987 1 111 112457778888887655578999999998 667999999999999999
Q ss_pred ceeeeeeccc----cChhHHHHHHHHHHhccCCccccccccccccCCCccCCCeEEEEEEeecCCCCC-CCCCeEEEEEe
Q 002661 580 IATQCISPTK----INDQYLTNVLLKINSKLGGINSLLALEQSSLIPLIKDTPTMILGMDVSHGSPGR-SDIPSVAAVVG 654 (895)
Q Consensus 580 V~TQci~~~~----~~~q~~~Ni~lKiN~KlGG~n~~~~~~~~~~~p~~~~~~tmiiG~Dv~H~~~~~-~~~pSi~avV~ 654 (895)
|+||||..++ .++|++.||++|||+||||+||.++... .+++...+|||||+||+||++++ ...|||+|+||
T Consensus 149 I~TQci~~~~~~k~~~~~~~~NI~lKin~KlGG~n~~v~~~~---~~~~~~~~tmiiG~Dv~H~~~~~~~~~pSiaa~Va 225 (426)
T cd04657 149 IHTQCVLAKKVTKKGNPQYFANVALKINLKLGGINHSLEPDI---RPLLTKEPTMVLGADVTHPSPGDPAGAPSIAAVVA 225 (426)
T ss_pred cccEEEcccccccccchHHHHHHHHHHHHhcCCEeeeccccc---ccccCCCCEEEEEEeeecCCCCCCCCCCcEEEEEE
Confidence 9999999754 4789999999999999999999997532 22445689999999999998864 45799999999
Q ss_pred ecCCCccceeEEEEEeccCcceecccccccccCCChHHHHHHHHHHHHHHhCCCCCceEEEEeCCCCchhHHHHHHHHHH
Q 002661 655 SQSWPLISRYRAAVRTQSSKVEMIDALYKPIANGNDDGIIRELLLDFYRTSKQRKPKQIIIFRDGVSESQFNQVLNIELE 734 (895)
Q Consensus 655 S~d~~~~~~y~~~~~~q~~~~e~i~~l~~~~~~~~~~~~~~~~l~~f~~~~~~~~P~~IIiyRDGvsegq~~~v~~~Ev~ 734 (895)
|+|. .+++|.+.+++|++++|++++| ++|++++|..|++. +|.+|++|||||||||||||++|+++|++
T Consensus 226 s~d~-~~~~y~~~~~~q~~~~e~i~~l---------~~~~~~~l~~~~~~-~~~~P~~IiiyRDGvsegq~~~v~~~E~~ 294 (426)
T cd04657 226 SVDW-HLAQYPASVRLQSHRQEIIDDL---------ESMVRELLRAFKKA-TGKLPERIIYYRDGVSEGQFAQVLNEELP 294 (426)
T ss_pred ecCC-cccccceEEEEeCCCcchHHHH---------HHHHHHHHHHHHHH-hCCCCceEEEEEcCcCHHHHHHHHHHHHH
Confidence 9996 8899999999999999998875 46999999998775 56899999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCcEEEEEEeecccceeecCCC------CCCCCCeeeeecccccCCcccEEeeeccCccccccCCee
Q 002661 735 QIIKAYQHLGEADIPKFTVIVAQKNHHTKLFQASG------PENVPPGTVVDTRIVHPRNYDFYMCAHAGMIGTSRPAHY 808 (895)
Q Consensus 735 ~i~~a~~~~~~~~~pkit~Ivv~Krh~~Rff~~~~------~~N~~pGTvVD~~it~p~~~dFyL~sh~~~qGTarPt~Y 808 (895)
+|++||.++..+|+|+||||||+||||+|||+.+. .+||+||||||++||+|..+||||+||.++|||||||||
T Consensus 295 ~i~~a~~~~~~~~~pkit~ivv~Krh~~Rff~~~~~~~~~~~~N~~pGTvVd~~it~p~~~dFyL~sh~~~qGTarPt~Y 374 (426)
T cd04657 295 AIRKACAKLYPGYKPKITFIVVQKRHHTRFFPTDEDDADGKNGNVPPGTVVDRGITHPREFDFYLCSHAGIQGTARPTHY 374 (426)
T ss_pred HHHHHHHHhccCCCCcEEEEEeccceeeeEeccCcccccccCCCCCCCeEEecccCCCCceeEEEeccccCccCCCCceE
Confidence 99999999988899999999999999999998643 479999999999999999999999999999999999999
Q ss_pred EEEecCCCCChHHHHHHHHHhhcccccccCCccccchhHHHHHHHHhhcccc
Q 002661 809 HVLLDEIGFSPDDLQNLIHSLSYVYQRSTTAISIVAPICYAHLAASQMGQFI 860 (895)
Q Consensus 809 ~Vl~d~~~~~~d~lq~lt~~Lc~~y~~~~~~vsiPaP~~yA~~~a~r~~~~~ 860 (895)
+||+||+++++|+||+|||+|||+|+||+++||+|+|+||||++|+|||+|+
T Consensus 375 ~vl~d~~~~~~d~lq~lt~~lc~~y~~~~~~vsip~p~~yA~~la~r~r~~~ 426 (426)
T cd04657 375 HVLWDEIGFTADELQTLTYNLCYTYARCTRSVSIPPPAYYAHLAAARARCYL 426 (426)
T ss_pred EEEECCCCCCHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999999999999999999999986
No 5
>cd04658 Piwi_piwi-like_Euk Piwi_piwi-like_Euk: PIWI domain, Piwi-like subfamily found in eukaryotes. This domain is found in Piwi and closely related proteins, where it is believed to perform a crucial role in germline cells, via RNA silencing. RNA silencing refers to a group of related gene-silencing mechanisms mediated by short RNA molecules, including siRNAs, miRNAs, and heterochromatin-related guide RNAs. The mechanism in Piwi is believed to be similar to that in Argonaute, the central component of the RNA-induced silencing complex (RISC). The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing.
Probab=100.00 E-value=7.1e-92 Score=808.77 Aligned_cols=433 Identities=29% Similarity=0.483 Sum_probs=385.0
Q ss_pred HHHHHHHhhCChHHHHHHHHHHHHhccCCCc--cccceeeEEEccceeEeeeEEecCCceecCCccccCCCCCccccC--
Q 002661 397 RASLVEKSRQKPQDRMRTLTDALRSYSYDED--PVLAACGISIGKQLTQVDGRILEIPKLKVGKSEDCIPRNGRWNFN-- 472 (895)
Q Consensus 397 ~~~~ik~~~~~P~~R~~~i~~~l~~~~~~~~--~~L~~~Gl~I~~~~~~v~arvL~~P~i~yg~~~~~~~~~g~Wn~~-- 472 (895)
.++|+++++.+|++|++.|.++++.++.+.+ ++|++|||+|++++++|+||+|+||+|.|+++....+.+|+|++.
T Consensus 3 m~~l~~~~~~~P~eR~~~i~~~~~~~~~~~~~~~~l~~~gi~i~~~~~~v~~rvL~~P~i~~~~~~~~~~~~~~w~~~~~ 82 (448)
T cd04658 3 MKELAEHTKLNPKERYDTIRQFIQRIQKNPSVQELLKKWGIELDSNPLKIQGRVLPPEQIIMGNVFVYANSNADWKREIR 82 (448)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHhcCCCchHHHHHHCCeEEcCCceEEeeEEeCCCeEEeCCCccCCCCCCCcchhhc
Confidence 4689999999999999999999999877655 589999999999999999999999999999876555678889764
Q ss_pred CceeecccccceEEEEEeCCCc-cHHHHHHHHHHHhhccCeeccCCceeeeccccccCCCchhHHHHHHHHHHHhCCCCC
Q 002661 473 NKRFLEATRIDRWIVVNFSARC-DTSHISRELINCGRNKGIHIERPFTLIEEDQQTRRGNPVVRVERMFELITEKLPGPP 551 (895)
Q Consensus 473 ~~~f~~p~~l~~W~vv~~~~~~-~~~~f~~~L~~~~~~~G~~i~~P~~v~~~~~~~~~~~~~~~le~~~~~i~~~~~~~~ 551 (895)
+..|+.++.+++|+++++..+. .+..|++.|.+.++.+||.+.+|..+...+ .+.+++++.+++....++
T Consensus 83 ~~~~~~~~~~~~W~vi~~~~~~~~~~~f~~~l~~~~~~~G~~~~~P~~~~~~~---------~~~~~~~~~l~~~~~~~~ 153 (448)
T cd04658 83 NQPLYDAVNLNNWVLIYPSRDQREAESFLQTLKQVAGPMGIQISPPKIIKVKD---------DRIETYIRALKDAFRSDP 153 (448)
T ss_pred CCcccCCcccCeEEEEEecCCHHHHHHHHHHHHHHHHHcCCccCCCeEEEeCC---------CCHHHHHHHHHHhhcCCC
Confidence 5578999999999999886433 699999999999999999999887654321 234566777776655679
Q ss_pred eEEEEEcCCCCCCcchHHHHHHhhcccCceeeeeecccc-----ChhHHHHHHHHHHhccCCccccccccccccCCCccC
Q 002661 552 QFILCVLPERKNSDIYGPWKKKSLSDFGIATQCISPTKI-----NDQYLTNVLLKINSKLGGINSLLALEQSSLIPLIKD 626 (895)
Q Consensus 552 ~lvlvIlp~~~~~~~Y~~iK~~~~~~~gV~TQci~~~~~-----~~q~~~Ni~lKiN~KlGG~n~~~~~~~~~~~p~~~~ 626 (895)
+|+|||+|+ +..++|+.||++++.+.||+||||..+++ ..+++.||++|||+||||+||.++.. ....
T Consensus 154 ~lvvvilp~-~~~~~Y~~iK~~~~~~~gI~tQ~i~~~t~~~~~~~~~~~~ni~lkinaKlGG~~w~l~~~------~~~~ 226 (448)
T cd04658 154 QLVVIILPG-NKKDLYDAIKKFCCVECPVPSQVITSRTLKKKKNLRSIASKIALQINAKLGGIPWTVEIP------PFIL 226 (448)
T ss_pred cEEEEEECC-CCchhHHHHHHHhhcccCcCCEEEehhhcccccccHHHHHHHHHHHHHHhCCcceEeccC------CCCC
Confidence 999999998 66789999999999999999999997643 34688999999999999999998642 1235
Q ss_pred CCeEEEEEEeecCCCCCCCCCeEEEEEeecCCCccceeEEEEEeccCccee-cccccccccCCChHHHHHHHHHHHHHHh
Q 002661 627 TPTMILGMDVSHGSPGRSDIPSVAAVVGSQSWPLISRYRAAVRTQSSKVEM-IDALYKPIANGNDDGIIRELLLDFYRTS 705 (895)
Q Consensus 627 ~~tmiiG~Dv~H~~~~~~~~pSi~avV~S~d~~~~~~y~~~~~~q~~~~e~-i~~l~~~~~~~~~~~~~~~~l~~f~~~~ 705 (895)
.+|||||+||+|++++ ..||++|+|||+|. ++++|++.+..|..++|+ ++++ ++|++++|..|++.
T Consensus 227 ~~tmiiGidv~h~~~~--~~~Si~a~vas~~~-~~~~~~~~~~~q~~~~e~~~~~l---------~~~~~~~l~~y~~~- 293 (448)
T cd04658 227 KNTMIVGIDVYHDTIT--KKKSVVGFVASLNK-SITKWFSKYISQVRGQEEIIDSL---------GKSMKKALKAYKKE- 293 (448)
T ss_pred CCeEEEEEeeecCCCC--CCCcEEEEEEEcCC-CCceEeeEEEEeCCCceeeHHHH---------HHHHHHHHHHHHHH-
Confidence 7899999999999863 46999999999995 889999999999999887 6654 56999999998776
Q ss_pred CCCCCceEEEEeCCCCchhHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEEeecccceeecCCCC--CCCCCeeeeeccc
Q 002661 706 KQRKPKQIIIFRDGVSESQFNQVLNIELEQIIKAYQHLGEADIPKFTVIVAQKNHHTKLFQASGP--ENVPPGTVVDTRI 783 (895)
Q Consensus 706 ~~~~P~~IIiyRDGvsegq~~~v~~~Ev~~i~~a~~~~~~~~~pkit~Ivv~Krh~~Rff~~~~~--~N~~pGTvVD~~i 783 (895)
+|.+|++|||||||||||||..|+++|+++|++||..+..+|+|+||||+|+||||+|||+.+.. +||+||||||++|
T Consensus 294 ~~~~P~~IiiyRdGvsegq~~~v~~~E~~~i~~a~~~~~~~~~p~it~ivv~Kr~~~Rff~~~~~~~~N~~~GTvVd~~i 373 (448)
T cd04658 294 NKKLPSRIIIYRDGVGDGQLKKVKEYEVPQIKKAIKQYSENYSPKLAYIVVNKRINTRFFNQGGNNFSNPPPGTVVDSEI 373 (448)
T ss_pred hCCCCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEeccccceeecCCCCCCCCCCCCcEecccc
Confidence 57999999999999999999999999999999999998888999999999999999999997654 5999999999999
Q ss_pred ccCCcccEEeeeccCccccccCCeeEEEecCCCCChHHHHHHHHHhhcccccccCCccccchhHHHHHHHHhhcc
Q 002661 784 VHPRNYDFYMCAHAGMIGTSRPAHYHVLLDEIGFSPDDLQNLIHSLSYVYQRSTTAISIVAPICYAHLAASQMGQ 858 (895)
Q Consensus 784 t~p~~~dFyL~sh~~~qGTarPt~Y~Vl~d~~~~~~d~lq~lt~~Lc~~y~~~~~~vsiPaP~~yA~~~a~r~~~ 858 (895)
|+|..+||||+||.++||||||+||+||+||+++++|+||+|||+|||+|+||++|||+|+|+||||++|+|++.
T Consensus 374 t~p~~~dFyL~s~~~~qGtarP~~Y~Vl~d~~~~~~~~lq~lt~~lc~~y~~~~~~vs~P~p~~yA~~~a~~~g~ 448 (448)
T cd04658 374 TKPEWYDFFLVSQSVRQGTVTPTHYNVLYDTTGLKPDHLQRLTYKLCHLYYNWSGSIRVPAPCQYAHKLAFLVGQ 448 (448)
T ss_pred cCCCcccEEEeccccCccCCCCceEEEEECCCCCCHHHHHHHHHHhhhcccCCCCCCccCHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999863
No 6
>cd02826 Piwi-like Piwi-like: PIWI domain. Domain found in proteins involved in RNA silencing. RNA silencing refers to a group of related gene-silencing mechanisms mediated by short RNA molecules, including siRNAs, miRNAs, and heterochromatin-related guide RNAs. The central component of the RNA-induced silencing complex (RISC) and related complexes is Argonaute. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing. This domain is also found in closely related proteins, including the Piwi subfamily, where it is believed to perform a crucial role in germline cells, via a similar mechanism.
Probab=100.00 E-value=2.1e-83 Score=725.06 Aligned_cols=380 Identities=28% Similarity=0.424 Sum_probs=327.4
Q ss_pred eeEeeeEEecCCceecCCccccCCCCCccccCCceeeccccc-ceEEEEEeCCCccHHHHHHHHHHHhhccCeeccC-Cc
Q 002661 441 LTQVDGRILEIPKLKVGKSEDCIPRNGRWNFNNKRFLEATRI-DRWIVVNFSARCDTSHISRELINCGRNKGIHIER-PF 518 (895)
Q Consensus 441 ~~~v~arvL~~P~i~yg~~~~~~~~~g~Wn~~~~~f~~p~~l-~~W~vv~~~~~~~~~~f~~~L~~~~~~~G~~i~~-P~ 518 (895)
+++|+||+|+||+|.|+++ |++++++|..|+.+ ++|+++++... ..++|++.|.+.++++||.+.+ |.
T Consensus 2 ~~~v~grvL~~p~i~~~~~---------w~~~~~~f~~~~~~~~~W~vi~~~~~-~~~~f~~~l~~~~~~~G~~~~~~~~ 71 (393)
T cd02826 2 PLILKGRVLPKPQILFKNK---------FLRNIGPFEKPAKITNPVAVIAFRNE-EVDDLVKRLADACRQLGMKIKEIPI 71 (393)
T ss_pred ceEEeeEecCCCceEecCC---------ccccCCeeCCCCEeCCeEEEEEcccH-HHHHHHHHHHHHHHhCCCccCCCCC
Confidence 6799999999999999863 99999999999999 99999988653 4678999999999999999988 55
Q ss_pred eeeeccccccCCCchhHHHHHHHHHHHhCCCCCeEEEEEcCCCCCCcchHHHHHHhhcccCceeeeeeccc-----cChh
Q 002661 519 TLIEEDQQTRRGNPVVRVERMFELITEKLPGPPQFILCVLPERKNSDIYGPWKKKSLSDFGIATQCISPTK-----INDQ 593 (895)
Q Consensus 519 ~v~~~~~~~~~~~~~~~le~~~~~i~~~~~~~~~lvlvIlp~~~~~~~Y~~iK~~~~~~~gV~TQci~~~~-----~~~q 593 (895)
........ ...+.++..++++. +.+++|+|||+|+ +++++|+.||++++.+ ||+||||..++ .+.+
T Consensus 72 ~~~~~~~~----~~~~~~~~~~~~~~---~~~~~lv~~ilp~-~~~~~Y~~iK~~~~~~-gI~tQ~i~~~t~~~~~~~~~ 142 (393)
T cd02826 72 VSWIEDLN----NSFKDLKSVFKNAI---KAGVQLVIFILKE-KKPPLHDEIKRLEAKS-DIPSQVIQLKTAKKMRRLKQ 142 (393)
T ss_pred cceeeccc----ccHHHHHHHHHHHh---hcCCCEEEEEEcC-CCccHHHHHHHHHhcc-CCceEEEehhhhccccccHH
Confidence 43222110 01223444444433 3468999999998 6779999999999988 99999999753 3578
Q ss_pred HHHHHHHHHHhccCCccccccccccccCCCccCCCeEEEEEEeecCCCC-CCCCCeEEEEEeecCCCccceeEEEEEecc
Q 002661 594 YLTNVLLKINSKLGGINSLLALEQSSLIPLIKDTPTMILGMDVSHGSPG-RSDIPSVAAVVGSQSWPLISRYRAAVRTQS 672 (895)
Q Consensus 594 ~~~Ni~lKiN~KlGG~n~~~~~~~~~~~p~~~~~~tmiiG~Dv~H~~~~-~~~~pSi~avV~S~d~~~~~~y~~~~~~q~ 672 (895)
++.||++|||+||||+||.++.. .+...+|||||+||+|++++ ....+|++|+|+|+|. . +.+.+..+.|.
T Consensus 143 ~~~Ni~lkin~KlGG~~~~l~~~------~~~~~~tmiiGiDv~h~~~~~~~~~~si~~~vas~~~-~-~~~g~~~~~~~ 214 (393)
T cd02826 143 TLDNLLRKVNSKLGGINYILDSP------VKLFKSDIFIGFDVSHPDRRTVNGGPSAVGFAANLSN-H-TFLGGFLYVQP 214 (393)
T ss_pred HHHHHHHHHhhhhCCeeeEeccC------CCCCCCEEEEEEEeeCCCCCCCCCCCcEEEEEeecCC-c-cccceEEEEec
Confidence 99999999999999999999642 12347899999999999875 3357999999999995 3 34445567787
Q ss_pred CcceecccccccccCCChHHHHHHHHHHHHHHhCCC-CCceEEEEeCCCCchhHHHHHHHHHHHHHHHHHHhCCCCCCcE
Q 002661 673 SKVEMIDALYKPIANGNDDGIIRELLLDFYRTSKQR-KPKQIIIFRDGVSESQFNQVLNIELEQIIKAYQHLGEADIPKF 751 (895)
Q Consensus 673 ~~~e~i~~l~~~~~~~~~~~~~~~~l~~f~~~~~~~-~P~~IIiyRDGvsegq~~~v~~~Ev~~i~~a~~~~~~~~~pki 751 (895)
.++|.++++ ++|++++|..|+++ ++. +|++|||||||||||||+.|+++|+++|++||. +..+|+|+|
T Consensus 215 ~~~~~~~~l---------~~~~~~~L~~y~~~-~~~~~P~~IiiyRDGvsegq~~~v~~~e~~~i~~a~~-~~~~~~p~i 283 (393)
T cd02826 215 SREVKLQDL---------GEVIKKCLDGFKKS-TGEGLPEKIVIYRDGVSEGEFKRVKEEVEEIIKEACE-IEESYRPKL 283 (393)
T ss_pred CccchHHHH---------HHHHHHHHHHHHHH-cCCCCcceeEEEecCCCHHHHHHHHHHHHHHHHHHHh-hCCCCCCCE
Confidence 788877664 46999999998765 567 999999999999999999999999999999999 777899999
Q ss_pred EEEEEeecccceeecCCCC---CCCCCeeeeecccccCCcccEEeeeccCccccccCCeeEEEecCCCCChHHHHHHHHH
Q 002661 752 TVIVAQKNHHTKLFQASGP---ENVPPGTVVDTRIVHPRNYDFYMCAHAGMIGTSRPAHYHVLLDEIGFSPDDLQNLIHS 828 (895)
Q Consensus 752 t~Ivv~Krh~~Rff~~~~~---~N~~pGTvVD~~it~p~~~dFyL~sh~~~qGTarPt~Y~Vl~d~~~~~~d~lq~lt~~ 828 (895)
|||+|+||||+|||+.+.. .||+||||||++||+|..+||||+||.++|||+||+||+||+||+++++|+||+|||+
T Consensus 284 t~Ivv~Krh~~Rff~~~~~~~~~Np~~GTvVd~~it~p~~~dFyL~sh~~~qGT~rP~~Y~Vl~d~~~~~~d~lq~lty~ 363 (393)
T cd02826 284 VIIVVQKRHNTRFFPNEKNGGVQNPEPGTVVDHTITSPGLSEFYLASHVARQGTVKPTKYTVVFNDKNWSLNELEILTYI 363 (393)
T ss_pred EEEEEeccccceeccCCCCCCCCCCCCceEeccccccCCcceEEEeccccCcCCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 9999999999999997652 7999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccccccCCccccchhHHHHHHHHhhcc
Q 002661 829 LSYVYQRSTTAISIVAPICYAHLAASQMGQ 858 (895)
Q Consensus 829 Lc~~y~~~~~~vsiPaP~~yA~~~a~r~~~ 858 (895)
|||+|+||+++||+|+|+||||++|+|||+
T Consensus 364 lc~~y~~~~~~vslP~p~~yA~~~a~r~rn 393 (393)
T cd02826 364 LCLTHQNVYSPISLPAPLYYAHKLAKRGRN 393 (393)
T ss_pred HhhcccccCCCcccChHHHHHHHHHHhhcC
Confidence 999999999999999999999999999985
No 7
>PF02171 Piwi: Piwi domain; InterPro: IPR003165 This domain is found in the stem cell self-renewal protein Piwi and its relatives in Drosophila melanogaster []. It has been found in the C-terminal of a number of proteins which also contain the PAZ domain (IPR003100 from INTERPRO) in their central region, for example the Argonaute proteins. Several of these proteins have been implicated in the development and maintenance of stem cells through the RNA-mediated gene-quelling mechanisms associated with the protein DICER. ; GO: 0005515 protein binding; PDB: 4F1N_B 3LUH_B 4EI1_A 3QX8_A 3LUC_C 3LUJ_B 3LUD_B 3QX9_A 3LUG_B 3LUK_B ....
Probab=100.00 E-value=2.3e-69 Score=593.69 Aligned_cols=293 Identities=47% Similarity=0.696 Sum_probs=256.8
Q ss_pred EEEEEcCCCCCCcchHHHHHHhhcccCceeeeeeccc---c--ChhHHHHHHHHHHhccCCcc-ccccccccccCCCccC
Q 002661 553 FILCVLPERKNSDIYGPWKKKSLSDFGIATQCISPTK---I--NDQYLTNVLLKINSKLGGIN-SLLALEQSSLIPLIKD 626 (895)
Q Consensus 553 lvlvIlp~~~~~~~Y~~iK~~~~~~~gV~TQci~~~~---~--~~q~~~Ni~lKiN~KlGG~n-~~~~~~~~~~~p~~~~ 626 (895)
+|+||+|+ ++.+.|+.+|++++.+.||+||||..++ . ..+++.||++|||+||||.| |.++.. ...++
T Consensus 1 ~i~~ii~~-~~~~~Y~~iKk~~~~~~gi~tQ~i~~~~~~~~~~~~~~~~ni~lkinaKlGG~n~~~~~~~--~~~~~--- 74 (302)
T PF02171_consen 1 LIVVIIPD-KNSDNYHAIKKYLERKLGIPTQCILSKTLRKKNKSKQILNNIALKINAKLGGINPWLLDSP--PSIDL--- 74 (302)
T ss_dssp -EEEEESS-SSHHHHHHHHHHHHTTTTCEEEEEEHHHHHTSTHHHHHHHHHHHHHHHHTTTBSEEECSCS--SGSSE---
T ss_pred CEEEEEeC-CChhHHHHHHHHHccCCCcccEEEccCcccccchHHHHHHHHHHHHHHhCCCeeeeecccc--ccccc---
Confidence 57899998 7789999999999999999999999753 2 36889999999999999995 555422 11111
Q ss_pred CCeEEEEEEeecCCCCCCCCCeEEEEEeecCCCccceeEEEEEeccCcceecccccccccCCChHHHHHHHHHHHHHHhC
Q 002661 627 TPTMILGMDVSHGSPGRSDIPSVAAVVGSQSWPLISRYRAAVRTQSSKVEMIDALYKPIANGNDDGIIRELLLDFYRTSK 706 (895)
Q Consensus 627 ~~tmiiG~Dv~H~~~~~~~~pSi~avV~S~d~~~~~~y~~~~~~q~~~~e~i~~l~~~~~~~~~~~~~~~~l~~f~~~~~ 706 (895)
.++||||+||+|++++....||++|+|+|+|. ..++|.+.+..|..++|+++++ +++++++|+.|++.++
T Consensus 75 ~~~miIGidv~h~~~~~~~~~sv~g~~~s~~~-~~~~~~~~~~~~~~~~e~~~~l---------~~~~~~~L~~~~~~~~ 144 (302)
T PF02171_consen 75 KNTMIIGIDVSHPSPGSDKNPSVVGFVASFDS-DGSKYFSSVRFQDSGQEIIDNL---------EEIIKEALKEFKKNNG 144 (302)
T ss_dssp SEEEEEEEEEEEESSTCTCSCEEEEEEEEEST-TTCEEEEEEEEECTTCCCHHHH---------HHHHHHHHHHHHHTTT
T ss_pred CceEEEEEEEEecCcccCCcceeeEEEEeccC-ccccccceeEEeccchhhhcch---------hhHHHHHHHHHHHHcC
Confidence 68999999999998765457999999999994 8899999999999999998875 3699999999877644
Q ss_pred CCCCceEEEEeCCCCchhHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEEeecccceeecCCCC---CCCCCeeeeeccc
Q 002661 707 QRKPKQIIIFRDGVSESQFNQVLNIELEQIIKAYQHLGEADIPKFTVIVAQKNHHTKLFQASGP---ENVPPGTVVDTRI 783 (895)
Q Consensus 707 ~~~P~~IIiyRDGvsegq~~~v~~~Ev~~i~~a~~~~~~~~~pkit~Ivv~Krh~~Rff~~~~~---~N~~pGTvVD~~i 783 (895)
+.+|++|||||||||||||..|+++|+++|++||+++..+|+|+|+||+|+||||+|||+.+.. .||+||||||+.|
T Consensus 145 ~~~P~~IiiyRdGvse~~~~~v~~~Ei~~i~~a~~~~~~~~~p~~~~i~v~K~~~~R~f~~~~~~~~~N~~~Gtvvd~~i 224 (302)
T PF02171_consen 145 KWLPERIIIYRDGVSEGQFKKVLEEEIEAIKEAIKELGEDYNPKITYIVVQKRHNTRFFPQNGRDGLQNPPPGTVVDTGI 224 (302)
T ss_dssp T-TTSEEEEEEES--GGGHHHHHHHHHHHHHHHHHHHTHTTCTEEEEEEEESSSS--EEESSSEETTTEECTTEEESSEE
T ss_pred CCCCceEEEEEcccCHHhhcccHHHHHHHHHHHHhhcccCCCCcEEEEEeeccccceEeecccccccCCCCCCeeeccce
Confidence 3499999999999999999999999999999999999989999999999999999999998764 5999999999999
Q ss_pred ccCCcccEEeeeccCccccccCCeeEEEecCCCCChHHHHHHHHHhhcccccccCCccccchhHHHHHHHHhhccccc
Q 002661 784 VHPRNYDFYMCAHAGMIGTSRPAHYHVLLDEIGFSPDDLQNLIHSLSYVYQRSTTAISIVAPICYAHLAASQMGQFIK 861 (895)
Q Consensus 784 t~p~~~dFyL~sh~~~qGTarPt~Y~Vl~d~~~~~~d~lq~lt~~Lc~~y~~~~~~vsiPaP~~yA~~~a~r~~~~~~ 861 (895)
|+|..+||||+||.++|||+||+||+|||||.+++.|+||++||+|||+|++|++++|+|+|+||||++|+|++++++
T Consensus 225 ~~~~~~~f~l~s~~~~~Gt~~P~~y~vl~~~~~~~~~~l~~~t~~L~~~~~~~~~~~~lP~p~~yA~~~a~~~~~~~~ 302 (302)
T PF02171_consen 225 TSPNYFEFYLVSHTARQGTARPTHYTVLYDDSNLSMDELQQLTYSLCHLYQNSTGPISLPAPLYYAHKLAKRGRNNLK 302 (302)
T ss_dssp EECSBEEEEEETSCCCSSSEEEEEEEEEEESSCSCHHHHHHHHHHHTTGGTTSSS--SS-HHHHHHHHHHHHHHHHC-
T ss_pred eeecceeeeeeecccccccccccEEEEecCcccccHHHHHHHHHHHHHHhcccCCCCccCHHHHHHHHHHHHHHhhcC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999874
No 8
>cd04659 Piwi_piwi-like_ProArk Piwi_piwi-like_ProArk: PIWI domain, Piwi-like subfamily found in Archaea and Bacteria. RNA silencing refers to a group of related gene-silencing mechanisms mediated by short RNA molecules, including siRNAs, miRNAs, and heterochromatin-related guide RNAs. The central component of the RNA-induced silencing complex (RISC) and related complexes is Argonaute. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing. This domain is also found in closely related proteins, including the Piwi subfamily, where it is believed to perform a crucial role in germline cells, via a similar mechanism.
Probab=100.00 E-value=4.6e-45 Score=415.27 Aligned_cols=285 Identities=20% Similarity=0.286 Sum_probs=219.2
Q ss_pred HHHHHHHHHHhCCCCCeEEEEEcCCCC-----CCcchHHHHHHhhcccCceeeeeecccc-----ChhHHHHHHHHHHhc
Q 002661 536 VERMFELITEKLPGPPQFILCVLPERK-----NSDIYGPWKKKSLSDFGIATQCISPTKI-----NDQYLTNVLLKINSK 605 (895)
Q Consensus 536 le~~~~~i~~~~~~~~~lvlvIlp~~~-----~~~~Y~~iK~~~~~~~gV~TQci~~~~~-----~~q~~~Ni~lKiN~K 605 (895)
+...++...+.....++++||++|+.. ..++|+.||+++ .+.||+||||..+++ ..+++.||++|||+|
T Consensus 96 ~~~a~~~~~~~~~~~~~~~lvilP~~~~~~~~~~~~Y~~iK~~~-~~~giptQ~v~~~tl~~~~~~~~~~~nial~i~aK 174 (404)
T cd04659 96 IIEAVDLALSESSQGVDVVIVVLPEDLKELPEEFDLYDRLKAKL-LRLGIPTQFVREDTLKNRQDLAYVAWNLALALYAK 174 (404)
T ss_pred HHHHHHHHHHhhcCCCCEEEEEeCHHHhhcccccCHHHHHHHHH-HhcCCceEEeeHHHcCccccHHHHHHHHHHHHHHh
Confidence 333444433332346899999999832 278999999987 679999999997543 356789999999999
Q ss_pred cCCccccccccccccCCCccCCCeEEEEEEeecCCCCCCCCCeEEEEEeecCCCccceeEEEEEeccCcceecccccccc
Q 002661 606 LGGINSLLALEQSSLIPLIKDTPTMILGMDVSHGSPGRSDIPSVAAVVGSQSWPLISRYRAAVRTQSSKVEMIDALYKPI 685 (895)
Q Consensus 606 lGG~n~~~~~~~~~~~p~~~~~~tmiiG~Dv~H~~~~~~~~pSi~avV~S~d~~~~~~y~~~~~~q~~~~e~i~~l~~~~ 685 (895)
+||+||.++.. ...+|||||+||+|+..+....+++|+++ +.++ ..+ ...+....+.+.+-
T Consensus 175 lGG~pW~l~~~--------~~~~~~iIGidv~~~~~~~~~~~~~a~vf-~~~g---~g~---~~~~~~~~~~~~~~---- 235 (404)
T cd04659 175 LGGIPWKLDAD--------SDPADLYIGIGFARSRDGEVRVTGCAQVF-DSDG---LGL---ILRGAPIEEPTEDR---- 235 (404)
T ss_pred cCCCceEcccC--------CCCCeEEEEEEEEEcCCCCEEEEEEEEEE-cCCC---CEE---EEecCccCCccccc----
Confidence 99999999632 13689999999999975422223443332 2221 111 11222222322210
Q ss_pred cCCChHHHHHHHHHHHHHHhCCCCCceEEEEeCCCCchhHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEEeecccceee
Q 002661 686 ANGNDDGIIRELLLDFYRTSKQRKPKQIIIFRDGVSESQFNQVLNIELEQIIKAYQHLGEADIPKFTVIVAQKNHHTKLF 765 (895)
Q Consensus 686 ~~~~~~~~~~~~l~~f~~~~~~~~P~~IIiyRDGvsegq~~~v~~~Ev~~i~~a~~~~~~~~~pkit~Ivv~Krh~~Rff 765 (895)
+.+.+.++++++|..|++.++..+|+||||||||+. .++|+++|++||.+++ ++++||+|+|+||+|||
T Consensus 236 ~~~~~~~~l~~~l~~y~~~~~~~~P~rIiihrdg~~-------~~~E~~~i~~a~~~~~----~~i~~I~V~k~~~~R~f 304 (404)
T cd04659 236 SPADLKDLLKRVLEGYRESHRGRDPKRLVLHKDGRF-------TDEEIEGLKEALEELG----IKVDLVEVIKSGPHRLF 304 (404)
T ss_pred CHHHHHHHHHHHHHHHHHHcCCCCCeEEEEECCCCC-------CHHHHHHHHHHHHhhC----ceEEEEEEEecCCcceE
Confidence 001356799999999877644339999999999983 6789999999999874 99999999999999999
Q ss_pred cCCCC---CCCCCeeeeecccccCCcccEEeeeccCc--------cccccCCeeEEEecCCCCChHHHHHHHHHhhcccc
Q 002661 766 QASGP---ENVPPGTVVDTRIVHPRNYDFYMCAHAGM--------IGTSRPAHYHVLLDEIGFSPDDLQNLIHSLSYVYQ 834 (895)
Q Consensus 766 ~~~~~---~N~~pGTvVD~~it~p~~~dFyL~sh~~~--------qGTarPt~Y~Vl~d~~~~~~d~lq~lt~~Lc~~y~ 834 (895)
..+.. .||++|||||.+ .+||||++|.+. +||++|+| |++++...+.|+|+++||.||++|+
T Consensus 305 ~~~~~~~~~np~~GT~v~~~-----~~~~~L~s~g~~~~~~~~~~~gtp~Pl~--v~~~~~~~~~~~l~~~~~~Lt~~~~ 377 (404)
T cd04659 305 RFGTYPNGFPPRRGTYVKLS-----DDEGLLWTHGSVPKYNTYPGMGTPRPLL--LRRHSGNTDLEQLASQILGLTKLNW 377 (404)
T ss_pred EecCCCCCCCCCCceEEEeC-----CCeEEEEecCCccccccCCCCCCCCcEE--EEEccCCCCHHHHHHHHHHHhhcCc
Confidence 86543 479999999953 499999999886 89999999 7788888999999999999999999
Q ss_pred cccC-CccccchhHHHHHHHHhhcc
Q 002661 835 RSTT-AISIVAPICYAHLAASQMGQ 858 (895)
Q Consensus 835 ~~~~-~vsiPaP~~yA~~~a~r~~~ 858 (895)
|++. ++++|+|+||||++|+..+.
T Consensus 378 n~~~~~~~lP~ti~YA~~~a~~~~~ 402 (404)
T cd04659 378 NSFQFYSRLPVTIHYADRVAKLLKR 402 (404)
T ss_pred CCCCCCCCcceEEeHHHHHHHHHhc
Confidence 9998 99999999999999987654
No 9
>PF02170 PAZ: PAZ domain; InterPro: IPR003100 This domain is named after the proteins Piwi Argonaut and Zwille. It is also found in the CAF protein from Arabidopsis thaliana. The function of the domain is unknown but has been found in the middle region of a number of members of the Argonaute protein family, which also contain the Piwi domain (IPR003165 from INTERPRO) in their C-terminal region []. Several members of this family have been implicated in the development and maintenance of stem cells through the RNA-mediated gene-quelling mechanisms associated with the protein DICER. ; GO: 0005515 protein binding; PDB: 1R6Z_P 1T2R_A 1T2S_A 3MJ0_A 1VYN_A 3O3I_X 2L5C_A 3O6E_X 3O7V_X 2L5D_A ....
Probab=99.88 E-value=1.4e-22 Score=194.88 Aligned_cols=129 Identities=37% Similarity=0.571 Sum_probs=108.0
Q ss_pred ccHHHHHHHhcCCCCCccccH-HHHHhhccccEEEeccCC--ceEEEeecCCCCCCccccccccCCCCCCCCCCceeeeH
Q 002661 267 GPVIDFLIANQNVREPRFIDW-TKAKKMLRNLRVKPRHRN--MEFKIVGLSEKPCNQQFFPMKVKSTEGTNEGETLEITV 343 (895)
Q Consensus 267 ~~l~d~l~~~~~~~~~~~~~~-~~i~~~Lkgl~V~~~~~~--r~~~I~~l~~~~a~~~~F~~~~~~~~g~~~~~g~~iSv 343 (895)
++|+|++.+..+........+ .++++.|+|++|.++|++ |.|+|.+|++.++++.+|+.+. |+.+||
T Consensus 1 ~~vld~~~~~~~~~~~~~~~~~~~~~~~lkg~~V~~~~~~~~r~~~I~~i~~~~~~~~~F~~~~----------g~~itv 70 (135)
T PF02170_consen 1 QSVLDFLKEIQNFRQRNNIKFQKKLERALKGLKVTTTYNNNKRTYKIKGISFDPAPESTFPDND----------GKEITV 70 (135)
T ss_dssp HHHHHHHHHHCTCSSHHHHHHHHHHHHHHTTEEEEETTTTCCEEEEEEEEEEEETTTSEEEETT----------SEEEEH
T ss_pred CcHHHHHHHHHhhhcccchHHHHHHHHHcCCcEEEEecCCCceEEEEeEEECCCCcceeeecCC----------CceEEh
Confidence 478999998776554332222 348999999999999998 9999999999999999998762 479999
Q ss_pred HHHHHHhcCcccccCCCCcEEecCCCCC--cccccccceEecccccccccCCHHHHHHHHHHhhC
Q 002661 344 YDYFTQHCRIELTYSAYLPCLDVGKPKR--PNYLPLELCSLVSLQRYTKALSSMQRASLVEKSRQ 406 (895)
Q Consensus 344 ~~Yf~~~Y~i~L~~~p~lPlv~vg~~~~--~~ylP~Elc~i~~~Q~~~~~l~~~q~~~~ik~~~~ 406 (895)
+|||+++||++|+| |+||||+++..++ ++|||||||.|+|+|++.+++.+.+++.|++.++.
T Consensus 71 ~eYf~~~Y~i~L~~-p~~Pll~~~~~~~~~~~~lP~Elc~i~~~q~~~~~~~~~~~s~m~r~~~~ 134 (135)
T PF02170_consen 71 AEYFKEKYNIRLKY-PDLPLLNVKSKKKKQPIYLPPELCFIVPGQRYKKKLFTCQPSIMIRFACS 134 (135)
T ss_dssp HHHHHHTCT---SS-TTSEEEEECSTTTTTCEEEECCGEEEETTTBB-SS--HHHHHHHHHHHSS
T ss_pred HHHHHhhhhccccc-CCCCeEEeccCCCCceEEEChhHhcccCCcHHHHhccHHHHHHHHHHHhc
Confidence 99999999999999 9999999998777 99999999999999999999999999999999875
No 10
>cd02825 PAZ PAZ domain, named PAZ after the proteins Piwi Argonaut and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the piwi and Dicer families. PAZ functions as a nucleic-acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes. This parent model also contains structures of an archaeal PAZ domain.
Probab=99.78 E-value=5.6e-19 Score=164.34 Aligned_cols=106 Identities=27% Similarity=0.305 Sum_probs=89.8
Q ss_pred cccHHHHHHHhcCCCCC----ccccHHHHHhhccccEEEeccC--CceEEEeecCCCCCCccccccccCCCCCCCCCCce
Q 002661 266 PGPVIDFLIANQNVREP----RFIDWTKAKKMLRNLRVKPRHR--NMEFKIVGLSEKPCNQQFFPMKVKSTEGTNEGETL 339 (895)
Q Consensus 266 ~~~l~d~l~~~~~~~~~----~~~~~~~i~~~Lkgl~V~~~~~--~r~~~I~~l~~~~a~~~~F~~~~~~~~g~~~~~g~ 339 (895)
.++|+|++.+..+.++. ...++.++.+.|+|++|.++|+ +|.|+|.||++.++++. |...+ |.
T Consensus 1 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkg~~V~~~h~~~~r~y~i~~i~~~~a~~~-f~~~~----------~~ 69 (115)
T cd02825 1 ADPVIETMCKFPKDREIDTPLLDSPREEFTKELKGLKVEDTHNPLNRVYRPDGETRLKAPSQ-LKHSD----------GK 69 (115)
T ss_pred CccHHHHHHHHhcccccccccchHHHHHHHHHcCCCEEEEecCCCceEEEEeeEECCCChhh-eecCC----------CC
Confidence 36899999887654322 2335678999999999999997 79999999999999988 75332 46
Q ss_pred eeeHHHHHHHhcCcccccCCCCcEEecCCC---CCcccccccceEec
Q 002661 340 EITVYDYFTQHCRIELTYSAYLPCLDVGKP---KRPNYLPLELCSLV 383 (895)
Q Consensus 340 ~iSv~~Yf~~~Y~i~L~~~p~lPlv~vg~~---~~~~ylP~Elc~i~ 383 (895)
++||+|||+++||++|+| |+||||++|+. ++.+|||||||.|+
T Consensus 70 ~isv~dYf~~kY~~~l~~-p~~Pll~~~~~~~~~~~~~lp~Elc~i~ 115 (115)
T cd02825 70 EITFADYFKERYNLTLTD-LNQPLLIVKFSSKKSYSILLPPELCVIT 115 (115)
T ss_pred EEEHHHHHHHHcCCcccC-CCCCEEEecCcccCCCceEEchheEEeC
Confidence 899999999999999999 99999999987 67899999999985
No 11
>cd02845 PAZ_piwi_like PAZ domain, Piwi_like subfamily. In multi-cellular organisms, the Piwi protein appears to be essential for the maintenance of germline stem cells. In the Drosophila male germline, Piwi was shown to be involved in the silencing of retrotransposons in the male gametes. The Piwi proteins share their domain architecture with other members of the argonaute family. The PAZ domain has been named after the proteins Piwi, Argonaut, and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the Piwi and Dicer families. PAZ functions as a nucleic acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might
Probab=99.77 E-value=5.4e-19 Score=163.70 Aligned_cols=107 Identities=25% Similarity=0.241 Sum_probs=89.0
Q ss_pred ccHHHHHHHhcCCCCCccccHHHHHhhccccEEEeccCCceEEEeecCCCCCCccccccccCCCCCCCCCCceeeeHHHH
Q 002661 267 GPVIDFLIANQNVREPRFIDWTKAKKMLRNLRVKPRHRNMEFKIVGLSEKPCNQQFFPMKVKSTEGTNEGETLEITVYDY 346 (895)
Q Consensus 267 ~~l~d~l~~~~~~~~~~~~~~~~i~~~Lkgl~V~~~~~~r~~~I~~l~~~~a~~~~F~~~~~~~~g~~~~~g~~iSv~~Y 346 (895)
.+++|++.+..+... ....++++++.|+|+.|.+.|+++.|+|.+|++.+++.++|+.++ +..+||+||
T Consensus 2 ~~~~~~~~~~~~~~~-~~~~~~~~~~~l~g~~V~t~yn~k~Y~I~~I~~~~~p~s~F~~~~----------~~~~S~~~Y 70 (117)
T cd02845 2 TTVLDRMHKLYRQET-DERFREECEKELIGSIVLTRYNNKTYRIDDIDFDKTPLSTFKKSD----------GTEITFVEY 70 (117)
T ss_pred eeHHHHHHHHHHhcc-cHHHHHHHHHHcCCCEEEEeeCCeEEEEeEecCCCCccccCcCCC----------CCeeeHHHH
Confidence 467888877543221 112567899999999999999999999999999999999997543 347999999
Q ss_pred HHHhcCcccccCCCCcEEecCCC--------CCcccccccceEeccc
Q 002661 347 FTQHCRIELTYSAYLPCLDVGKP--------KRPNYLPLELCSLVSL 385 (895)
Q Consensus 347 f~~~Y~i~L~~~p~lPlv~vg~~--------~~~~ylP~Elc~i~~~ 385 (895)
|+++||+.|+| |+|||+.++.+ .+++|||||||.++|.
T Consensus 71 y~~kY~i~I~~-~~qPLL~~~~k~~~~~~~~~~~iyL~pElC~ltgl 116 (117)
T cd02845 71 YKKQYNIEITD-LNQPLLVSRPKRRDPRGGEKEPIYLIPELCFLTGL 116 (117)
T ss_pred HHHHcCCcccc-CCCCcEEeeccccccCCCCCcEEEEchHHhhhcCC
Confidence 99999999999 99999999763 3479999999999984
No 12
>cd02846 PAZ_argonaute_like PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the Piwi and Dicer families. PAZ functions as a nucleic acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes.
Probab=99.77 E-value=1.7e-18 Score=161.55 Aligned_cols=107 Identities=47% Similarity=0.791 Sum_probs=92.1
Q ss_pred ccHHHHHHHhcCCCCC---ccccHHHHHhhccccEEEeccC---CceEEEeecCCCCCCccccccccCCCCCCCCCCcee
Q 002661 267 GPVIDFLIANQNVREP---RFIDWTKAKKMLRNLRVKPRHR---NMEFKIVGLSEKPCNQQFFPMKVKSTEGTNEGETLE 340 (895)
Q Consensus 267 ~~l~d~l~~~~~~~~~---~~~~~~~i~~~Lkgl~V~~~~~---~r~~~I~~l~~~~a~~~~F~~~~~~~~g~~~~~g~~ 340 (895)
++|+|++++..+.... ...++.+++++|+|++|.++|. +|.|+|.||+..++.+.+|+.++. +.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkgl~v~~~~~~~~~r~~~i~~l~~~~~~~~~F~~~~~---------~~~ 72 (114)
T cd02846 2 QPVIEFLKEFLGFDTPLGLSDNDRRKLKKALKGLKVEVTHRGNTNRKYKIKGLSAEPASQQTFELKDG---------EKE 72 (114)
T ss_pred ccHHHHHHHHhCcccccccchHHHHHHHHHhCCCEEEEEcCCCCCceEEEeeccCCCccceEEEcCCC---------CcE
Confidence 6899999987655432 2236778999999999999997 699999999999998999976541 148
Q ss_pred eeHHHHHHHhcCcccccCCCCcEEecCCCCCcccccccceEec
Q 002661 341 ITVYDYFTQHCRIELTYSAYLPCLDVGKPKRPNYLPLELCSLV 383 (895)
Q Consensus 341 iSv~~Yf~~~Y~i~L~~~p~lPlv~vg~~~~~~ylP~Elc~i~ 383 (895)
+||+|||+++||++|+| |+||||++|+.++++|+|||||.|.
T Consensus 73 isV~dYf~~~y~~~l~~-p~lP~v~~g~~~~~~~~P~Elc~i~ 114 (114)
T cd02846 73 ISVADYFKEKYNIRLKY-PNLPCLQVGRKGKPNYLPMELCNIV 114 (114)
T ss_pred EEHHHHHHHHcCCcccC-CCCCEEEeCCCCCCcEecceeEEeC
Confidence 99999999999999999 9999999999888999999999984
No 13
>PF08699 DUF1785: Domain of unknown function (DUF1785); InterPro: IPR014811 This region is found in argonaute [] proteins and often co-occurs with IPR003103 from INTERPRO and IPR003165 from INTERPRO. ; PDB: 1R6Z_P 3MJ0_A 4EI1_A 4F3T_A 4EI3_A 1R4K_A.
Probab=99.47 E-value=3.2e-14 Score=110.98 Aligned_cols=51 Identities=55% Similarity=0.868 Sum_probs=41.5
Q ss_pred ecccccccCCCCCccccCCCeEEeecceEEEEecCCceeeeeecceeeeecc
Q 002661 215 LVRQSFFHDDSRNLVDVGGGVSGIRGFHSSFRPTQGGLSLNMDVSTTMILKP 266 (895)
Q Consensus 215 ~~gr~ff~~~~~~~~~l~~gle~~~Gf~~Sir~~~~gl~LniD~~~~~F~~~ 266 (895)
.+||+||..+... .++++|+|+|+|||+||||+.++|.||+|+++++|+++
T Consensus 2 ~vgrsFF~~~~~~-~~l~~Gle~~rG~~qSvRp~~~~l~lNvDvs~~aF~~p 52 (52)
T PF08699_consen 2 AVGRSFFPPSGGP-VDLGGGLEAWRGFFQSVRPTQGGLLLNVDVSHTAFYKP 52 (52)
T ss_dssp EETTEEEE-------EEETTEEEEEEEEEEEEEETTEEEEEEECCEECCC--
T ss_pred ccccccCCCCCCC-ccCCCcEEEeEeEEeeeEEcCCCCEEEEeCceeeEECc
Confidence 5799999877554 68999999999999999999999999999999999975
No 14
>cd02844 PAZ_CAF_like PAZ domain, CAF_like subfamily. CAF (for carpel factory) is a plant homolog of Dicer. CAF has been implicated in flower morphogenesis and in early Arabidopsis development and might function through posttranscriptional regulation of specific mRNA molecules. PAZ domains are named after the proteins Piwi, Argonaut, and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the Piwi and Dicer families. PAZ functions as a nucleic-acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes.
Probab=99.44 E-value=1.4e-13 Score=130.38 Aligned_cols=84 Identities=26% Similarity=0.288 Sum_probs=70.2
Q ss_pred HHhhccccEEEeccCCceEEEeecCCCCCCccccccccCCCCCCCCCCceeeeHHHHHHHhcCcccccCCCCcEEecCC-
Q 002661 290 AKKMLRNLRVKPRHRNMEFKIVGLSEKPCNQQFFPMKVKSTEGTNEGETLEITVYDYFTQHCRIELTYSAYLPCLDVGK- 368 (895)
Q Consensus 290 i~~~Lkgl~V~~~~~~r~~~I~~l~~~~a~~~~F~~~~~~~~g~~~~~g~~iSv~~Yf~~~Y~i~L~~~p~lPlv~vg~- 368 (895)
..+.|+|+.|.+.|++|.|+|.+|+ ..+++++|+.++ | +..+|++|||+++|||.|+| |+|||+++..
T Consensus 27 ~~~~l~g~~V~t~hn~r~Y~I~~i~-~~~p~s~F~~~~----~-----~~~~Sy~eYy~~kY~i~L~~-~~QPLL~~~~~ 95 (135)
T cd02844 27 CACDLKGSVVTAPHNGRFYVISGIL-DLNANSSFPGKE----G-----LGYATYAEYFKEKYGIVLNH-PNQPLLKGKQI 95 (135)
T ss_pred cHHHhcCCEEEEcCCCcEEEEEEEc-CCCccCcccCCC----C-----CceeeHHHHHHHHhCceecc-CCcceEEEecc
Confidence 4678999999999999999999999 899999997543 1 14699999999999999999 9999997641
Q ss_pred -------------C------C---CcccccccceEecc
Q 002661 369 -------------P------K---RPNYLPLELCSLVS 384 (895)
Q Consensus 369 -------------~------~---~~~ylP~Elc~i~~ 384 (895)
. . ..++||||||.+.+
T Consensus 96 ~~~~NlL~~~~~~~~~~~~~~~~~~~v~L~PELC~~~~ 133 (135)
T cd02844 96 FNLHNLLHNRFEEKGESEEKEKDRYFVELPPELCSVID 133 (135)
T ss_pred cccceecccccccccccccccccceEEEeChHHhcccc
Confidence 0 1 14699999999864
No 15
>COG1431 Argonaute homolog, implicated in RNA metabolism [Translation, ribosomal structure and biogenesis]
Probab=99.16 E-value=2e-09 Score=119.45 Aligned_cols=348 Identities=17% Similarity=0.161 Sum_probs=187.9
Q ss_pred cCCceecCC-ccccCCCCCccccCCceeecccccceEEEEEe---CCCc--cHHHHHHHHHHHhhccC-ee--ccCCcee
Q 002661 450 EIPKLKVGK-SEDCIPRNGRWNFNNKRFLEATRIDRWIVVNF---SARC--DTSHISRELINCGRNKG-IH--IERPFTL 520 (895)
Q Consensus 450 ~~P~i~yg~-~~~~~~~~g~Wn~~~~~f~~p~~l~~W~vv~~---~~~~--~~~~f~~~L~~~~~~~G-~~--i~~P~~v 520 (895)
.+|.+..|+ |++......-|++. .+..|.....|.-+.. +..- .+..+.+.+....+..+ +. +.-+...
T Consensus 308 k~pdiv~g~~gktti~n~nl~~yl--py~~p~~~~l~nei~~iv~d~El~~rlk~~~kkv~~~fkn~n~i~~k~eg~~l~ 385 (685)
T COG1431 308 KGPDIVIGTEGKTTIDNVNLFCYL--PYFKPDGTMLWNEISPIVTDSELLTRLKSTIKKVVYGFKNSNGIDWKVEGLTLH 385 (685)
T ss_pred cCCceEecccceeeEehhhhhhhh--cccccccceecceeeEEEehhhhhhHHHHHHHHHHHHHHhccchhhhcccceee
Confidence 455665554 44322233344432 3345544455654432 2211 36778888888777655 33 2223222
Q ss_pred eeccccccCCCchhHHHHHHHHHHHhCCCCCeEEEEEcCCCCCCcchHHHHHHhhcccCceeeeeeccc---cChhHHHH
Q 002661 521 IEEDQQTRRGNPVVRVERMFELITEKLPGPPQFILCVLPERKNSDIYGPWKKKSLSDFGIATQCISPTK---INDQYLTN 597 (895)
Q Consensus 521 ~~~~~~~~~~~~~~~le~~~~~i~~~~~~~~~lvlvIlp~~~~~~~Y~~iK~~~~~~~gV~TQci~~~~---~~~q~~~N 597 (895)
.... +....+.+-.++.++ ....++..-+- ++...|+.+|| .+.-|+||.+.-.+ .-.-++.|
T Consensus 386 ~a~~----r~~~kddl~~iIkei------d~ee~~k~e~y-kdd~~YailKr---ld~~ipsqvil~~n~rk~~Kg~~tn 451 (685)
T COG1431 386 VAGK----RPKMKDDLTKIIKEI------DVEELKKQEMY-KDDVKYAILKR---LDETIPSQVILDPNNRKPYKGTKTN 451 (685)
T ss_pred eccc----chhhhccchhhhhhh------hhhhhcccccc-ccchHHHHHHh---hcccCcceeeeccccCCcchhhhhH
Confidence 1110 100112222333332 01122333333 56678999998 56789999998632 22347899
Q ss_pred HHHHHHhccCCccccccccccccCCCccCCCeEEEEEEeecCCCCCCCCCeEEEEEeecCC-CccceeEEEEEeccCcce
Q 002661 598 VLLKINSKLGGINSLLALEQSSLIPLIKDTPTMILGMDVSHGSPGRSDIPSVAAVVGSQSW-PLISRYRAAVRTQSSKVE 676 (895)
Q Consensus 598 i~lKiN~KlGG~n~~~~~~~~~~~p~~~~~~tmiiG~Dv~H~~~~~~~~pSi~avV~S~d~-~~~~~y~~~~~~q~~~~e 676 (895)
++.|+-+|-+|+++.+.... ..-+-|+|+||+...-| ...+-|++.-.+. ..+.+|+..... ..+ |
T Consensus 452 la~~~~~ktlgqpY~~r~~~--------gpvDaivGlDvsr~~~g---n~tV~gct~~f~seg~l~eyy~t~tp-a~G-E 518 (685)
T COG1431 452 LASKRYLKTLGQPYLKRNGL--------GPVDAIVGLDVSRVSEG---NWTVEGCTSCFVSEGGLEEYYHTVTP-ALG-E 518 (685)
T ss_pred HHHHHHHHhcCCceeeeccC--------CCccceeeeeeeEEeeC---CeEEeeeeEEEeccCceEEeeecccC-Ccc-c
Confidence 99999999999999885321 12358999999997632 2344442221221 133344322110 011 1
Q ss_pred ecccccccccCCChHHHHHHHHHHHHHHhCCCCCceEEEEeCCCCchhHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEE
Q 002661 677 MIDALYKPIANGNDDGIIRELLLDFYRTSKQRKPKQIIIFRDGVSESQFNQVLNIELEQIIKAYQHLGEADIPKFTVIVA 756 (895)
Q Consensus 677 ~i~~l~~~~~~~~~~~~~~~~l~~f~~~~~~~~P~~IIiyRDGvsegq~~~v~~~Ev~~i~~a~~~~~~~~~pkit~Ivv 756 (895)
.. + ..++.+..+ .| ..-..-++|++.|||- +...|++++++.=+.++ ..++.+.+
T Consensus 519 rl----~-----~~g~yle~~--~~---~gfe~~n~iV~lRDG~-------l~~~E~aavkeyg~elg----sn~ev~~i 573 (685)
T COG1431 519 RL----E-----TSGRYLEKM--NW---RGFESRNLIVTLRDGK-------LVAGEIAAVKEYGGELG----SNPEVNRI 573 (685)
T ss_pred hh----h-----hHHHHHHHH--Hh---hhhhccCeeEEEecCc-------cchHHHHHHHHHhhhcC----CChhhhee
Confidence 11 0 011111111 11 0113446799999994 55668777666555443 34455555
Q ss_pred eecccceeecCCCCCCCCCeeeeecccccCCcccEEee--eccCccccccCCeeEEEecCCCCChHHHHHHHHHhhcccc
Q 002661 757 QKNHHTKLFQASGPENVPPGTVVDTRIVHPRNYDFYMC--AHAGMIGTSRPAHYHVLLDEIGFSPDDLQNLIHSLSYVYQ 834 (895)
Q Consensus 757 ~Krh~~Rff~~~~~~N~~pGTvVD~~it~p~~~dFyL~--sh~~~qGTarPt~Y~Vl~d~~~~~~d~lq~lt~~Lc~~y~ 834 (895)
.| .+-+||......= |-.+-.++..++. .+ +.....||.+|...-=. +-.+.-|-|- |.|.|+-|.+
T Consensus 574 ~k-nNp~vf~~e~~i~---g~f~~~~~s~~h~----~~~~ynpv~~gT~~pi~~r~~--~g~l~~e~i~-lv~dLT~mNy 642 (685)
T COG1431 574 LK-NNPWVFAIEGEIW---GAFVRLDGSTVHL----CCSPYNPVRRGTPRPIALRRR--DGKLDGELIG-LVHDLTAMNY 642 (685)
T ss_pred cc-cCCeEEEecceee---eEEEecCCccccc----ccCCCCceecCCCcccccccc--cCccchhhHH-HHHHhhhhcc
Confidence 44 5666998654210 3333322211110 00 12345788888765433 3335555555 9999999999
Q ss_pred cccCC--ccccchhHHHHHHHHhhcccccc
Q 002661 835 RSTTA--ISIVAPICYAHLAASQMGQFIKF 862 (895)
Q Consensus 835 ~~~~~--vsiPaP~~yA~~~a~r~~~~~~~ 862 (895)
.+... .+||||++|||++.+.++.-.+.
T Consensus 643 s~~~g~~~rlPApvhYaDk~~kl~~~~~~I 672 (685)
T COG1431 643 SNPSGTWSRLPAPVHYADKASKLARYGVSI 672 (685)
T ss_pred CCCCCceecCCcchhhhHHHHHHHhccCCc
Confidence 88888 99999999999999999885543
No 16
>cd02843 PAZ_dicer_like PAZ domain, dicer_like subfamily. Dicer is an RNAse involved in cleaving dsRNA in the RNA interference pathway. It generates dsRNAs which are approximately 20 bp long (siRNAs), which in turn target hydrolysis of homologous RNAs. PAZ domains are named after the proteins Piwi Argonaut and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the piwi and Dicer families. PAZ functions as a nucleic-acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes.
Probab=98.64 E-value=4.4e-08 Score=89.40 Aligned_cols=64 Identities=20% Similarity=0.281 Sum_probs=57.1
Q ss_pred hhccccEEEeccCC----ceEEEeecCCCCCCccccccccCCCCCCCCCCceeeeHHHHHHHhcCcccccCCCCcEEecC
Q 002661 292 KMLRNLRVKPRHRN----MEFKIVGLSEKPCNQQFFPMKVKSTEGTNEGETLEITVYDYFTQHCRIELTYSAYLPCLDVG 367 (895)
Q Consensus 292 ~~Lkgl~V~~~~~~----r~~~I~~l~~~~a~~~~F~~~~~~~~g~~~~~g~~iSv~~Yf~~~Y~i~L~~~p~lPlv~vg 367 (895)
+.+.|..|.+.|+| ++|+|.+|.+...+.++|+.+ ..+|++|||+++|||.|++ ++||||.|.
T Consensus 39 ~~~~g~vV~t~YnN~d~pK~Y~V~dI~~dltP~S~F~~~------------~~~Ty~eYyk~KY~I~I~~-~~QPLL~v~ 105 (122)
T cd02843 39 EDYQDAVVMPWYRNFDQPQYFYVAEICTDLRPLSKFPGP------------EYETFEEYYKKKYKLDIQN-LNQPLLDVD 105 (122)
T ss_pred HHhCCCEEeecccCCCCCeEEEEEEEcCCCCCCCCCCCC------------CCccHHHHHHHhcCeEecc-CCCCcEeec
Confidence 46899999999998 899999999988889999632 2799999999999999999 999999985
Q ss_pred C
Q 002661 368 K 368 (895)
Q Consensus 368 ~ 368 (895)
.
T Consensus 106 ~ 106 (122)
T cd02843 106 H 106 (122)
T ss_pred C
Confidence 3
No 17
>PF13032 DUF3893: Domain of unknown function (DUF3893)
Probab=91.61 E-value=0.37 Score=46.23 Aligned_cols=51 Identities=20% Similarity=0.177 Sum_probs=42.7
Q ss_pred ccCCeeEEEecCCCCChHHHHHHHHHhhcccccccCCccccchhHHHHHHH
Q 002661 803 SRPAHYHVLLDEIGFSPDDLQNLIHSLSYVYQRSTTAISIVAPICYAHLAA 853 (895)
Q Consensus 803 arPt~Y~Vl~d~~~~~~d~lq~lt~~Lc~~y~~~~~~vsiPaP~~yA~~~a 853 (895)
....=.+|+.=...-+.++|..|||.||+++.-+...+.+|.|+|+|.++.
T Consensus 67 ~~ilEI~V~~~~~~d~~~~lA~~vh~LR~~~~~~~~~l~lP~PLHlak~~~ 117 (138)
T PF13032_consen 67 PQILEITVLGCQPEDDPEALAKLVHYLRRSPPLYDENLALPLPLHLAKQAK 117 (138)
T ss_pred CCceEEEEeccCCCCCHHHHHHHHHHHHhCcccccccccCcccHHHHHHHH
Confidence 344556777655567899999999999999999999999999999998864
No 18
>PF08459 UvrC_HhH_N: UvrC Helix-hairpin-helix N-terminal; InterPro: IPR001162 During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products []. The UvrC proteins contain 4 conserved regions: a central region which interacts with UvrB (Uvr domain), a Helix hairpin Helix (HhH) domain important for 5 prime incision of damage DNA and the homology regions 1 and 2 of unknown function. UvrC homology region 2 is specific for UvrC proteins, whereas UvrC homology region 1 is also shared by few other nucleases. Proteins that contain the UvrC homology region 1, IPR000305 from INTERPRO, are listed below: Prokaryotic UvrC proteins. Bacteriophage T4 END2 protein. Small subunit of ribonucleotide reductase enzyme. T4 TEV1 protein. Endonuclease specific to the thymidylate synthase (td) gene splice junction. Found in putative intron-homing endonucleases encoded by group I introns of fungi and phage. Mycobacterium hypothetical protein Y002. Exonuclease by similarity. Bacillus subtilis hypothetical protein YURQ. ; GO: 0003677 DNA binding, 0004518 nuclease activity, 0006289 nucleotide-excision repair; PDB: 3C65_A 2NRZ_A 2NRR_A 2NRX_A 2NRV_A 2NRT_A 2NRW_A.
Probab=89.77 E-value=1.4 Score=43.12 Aligned_cols=106 Identities=28% Similarity=0.365 Sum_probs=53.6
Q ss_pred CCCeEEEEEEeecCCCCCCCCCeEEEEEeecCC-CccceeEEEEEeccCcceecccccccccCCChHHHHHHHHHHHHHH
Q 002661 626 DTPTMILGMDVSHGSPGRSDIPSVAAVVGSQSW-PLISRYRAAVRTQSSKVEMIDALYKPIANGNDDGIIRELLLDFYRT 704 (895)
Q Consensus 626 ~~~tmiiG~Dv~H~~~~~~~~pSi~avV~S~d~-~~~~~y~~~~~~q~~~~e~i~~l~~~~~~~~~~~~~~~~l~~f~~~ 704 (895)
+.|.-|-++|+||-.+ .-.|+++|.-.|. +.-..|. ...+... +-.+|. .+|.|.|...++.
T Consensus 9 ~~P~rIE~fDiSh~~G----~~~Vgs~Vvf~~G~~~k~~YR-~f~i~~~--~~~dDy----------~~M~Evl~RR~~~ 71 (155)
T PF08459_consen 9 KLPRRIECFDISHIQG----SDTVGSMVVFENGKPDKSEYR-RFNIKTV--DGGDDY----------AAMREVLTRRFKR 71 (155)
T ss_dssp S--SEEEEEEEEECTT----TCEEEEEEEEETTEE-GGG-E-EEEEE----STT-HH----------HHHHHHHHHHHCC
T ss_pred CCCCEEEEEECcccCC----cccEEEEEEEECCccChhhCc-eEecCCC--CCCcHH----------HHHHHHHHHHHhc
Confidence 3567899999999753 3467788776664 2223332 2333311 112332 4788888776643
Q ss_pred h---CCCCCceEEEEeCCCCchhHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEEee--cccce
Q 002661 705 S---KQRKPKQIIIFRDGVSESQFNQVLNIELEQIIKAYQHLGEADIPKFTVIVAQK--NHHTK 763 (895)
Q Consensus 705 ~---~~~~P~~IIiyRDGvsegq~~~v~~~Ev~~i~~a~~~~~~~~~pkit~Ivv~K--rh~~R 763 (895)
. ...+|+-|+| || +.||+. +.++++++++-. +-+|-..| .|.++
T Consensus 72 ~~~~~~~lPDLilI--DG-G~gQl~--------aa~~~l~~lgl~----i~viglaK~~~~~t~ 120 (155)
T PF08459_consen 72 LKEEKEPLPDLILI--DG-GKGQLN--------AAKEVLKELGLN----IPVIGLAKNDEHKTG 120 (155)
T ss_dssp CHHHT----SEEEE--SS-SHHHHH--------HHHHHHHCTT--------EEEEESSSSE---
T ss_pred ccccCCCCCCEEEE--cC-CHHHHH--------HHHHHHHHcCCC----eEEEEEEeccccccc
Confidence 1 1268999999 88 556654 456777766433 44444444 45555
No 19
>PRK11617 endonuclease V; Provisional
Probab=86.53 E-value=23 Score=36.89 Aligned_cols=48 Identities=17% Similarity=0.175 Sum_probs=35.4
Q ss_pred ccCCeeEEEecCCCCChHHHHHHHHHhhcccccccCCccccchhHHHHHHHHhhcccc
Q 002661 803 SRPAHYHVLLDEIGFSPDDLQNLIHSLSYVYQRSTTAISIVAPICYAHLAASQMGQFI 860 (895)
Q Consensus 803 arPt~Y~Vl~d~~~~~~d~lq~lt~~Lc~~y~~~~~~vsiPaP~~yA~~~a~r~~~~~ 860 (895)
.+|....+ ...++.|+--.++-.+|- --++|.|+..||.+|++.+...
T Consensus 170 ~kPiyVS~---Gh~i~l~~A~~~v~~~~~-------~yRlPePlR~Ad~ls~~~~~~~ 217 (224)
T PRK11617 170 CNPLFIST---GHRVSLDSALAWVQRCMK-------GYRLPEPTRWADALASRRPAFV 217 (224)
T ss_pred CCCEEEcC---CCCcCHHHHHHHHHHHcc-------CCCCCHHHHHHHHHHhhhhhhh
Confidence 35544333 345788998888888774 3379999999999998887754
No 20
>TIGR00194 uvrC excinuclease ABC, C subunit. This family consists of the DNA repair enzyme UvrC, an ABC excinuclease subunit which interacts with the UvrA/UvrB complex to excise UV-damaged nucleotide segments.
Probab=76.99 E-value=19 Score=43.21 Aligned_cols=110 Identities=29% Similarity=0.360 Sum_probs=64.7
Q ss_pred eEEEEEEeecCCCCCCCCCeEEEEEeecCC-CccceeEEEEEeccCcceecccccccccCCChHHHHHHHHHHHHHHhCC
Q 002661 629 TMILGMDVSHGSPGRSDIPSVAAVVGSQSW-PLISRYRAAVRTQSSKVEMIDALYKPIANGNDDGIIRELLLDFYRTSKQ 707 (895)
Q Consensus 629 tmiiG~Dv~H~~~~~~~~pSi~avV~S~d~-~~~~~y~~~~~~q~~~~e~i~~l~~~~~~~~~~~~~~~~l~~f~~~~~~ 707 (895)
.-|-++|+||-.+ .-.|+++|.-.|+ +.-..|. ..++... +-.+|. .+|+|.|...|+....
T Consensus 382 ~rIE~fDiSh~~G----~~~V~smVvf~~G~~~k~~YR-~f~i~~~--~~~dDy----------a~m~Evl~RR~~r~~~ 444 (574)
T TIGR00194 382 KRIEIFDISHIDG----SQTVGSMVVFEDGKPLKASYR-RYNINSI--TGGDDY----------AAMREVLRRRYSSIQK 444 (574)
T ss_pred CEEEEEECCccCC----CcceEEEEEEeCCccChhhCC-eeecCCC--CCCCHH----------HHHHHHHHHHHhhhcc
Confidence 6789999999753 2367888877664 2223332 1222211 112332 4778887766644211
Q ss_pred ----CCCceEEEEeCCCCchhHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEEee--cccceeecCC
Q 002661 708 ----RKPKQIIIFRDGVSESQFNQVLNIELEQIIKAYQHLGEADIPKFTVIVAQK--NHHTKLFQAS 768 (895)
Q Consensus 708 ----~~P~~IIiyRDGvsegq~~~v~~~Ev~~i~~a~~~~~~~~~pkit~Ivv~K--rh~~Rff~~~ 768 (895)
.+|+-||| || +.||+.. ..+++++++-. ..+.+|-..| ||.+++|..+
T Consensus 445 ~~~~~~PDLili--DG-GkgQl~a--------a~~~l~~lg~~--~~i~viglaK~~~~~~~i~~~~ 498 (574)
T TIGR00194 445 KNNLPLPDLILI--DG-GKGQLNA--------ALEVLKSLGVV--NKPIVIGLAKAKRHETDIFLIG 498 (574)
T ss_pred ccCCCCCCEEEE--eC-CHHHHHH--------HHHHHHHcCCC--CCCcEEEEEecCCCceEEEeCC
Confidence 48998888 88 5677654 45666666531 1355666666 6767777644
No 21
>PRK14672 uvrC excinuclease ABC subunit C; Provisional
Probab=76.39 E-value=20 Score=43.42 Aligned_cols=110 Identities=22% Similarity=0.329 Sum_probs=65.5
Q ss_pred CCCeEEEEEEeecCCCCCCCCCeEEEEEeecCC-CccceeEEEEEeccCcceecccccccccCCChHHHHHHHHHHHHHH
Q 002661 626 DTPTMILGMDVSHGSPGRSDIPSVAAVVGSQSW-PLISRYRAAVRTQSSKVEMIDALYKPIANGNDDGIIRELLLDFYRT 704 (895)
Q Consensus 626 ~~~tmiiG~Dv~H~~~~~~~~pSi~avV~S~d~-~~~~~y~~~~~~q~~~~e~i~~l~~~~~~~~~~~~~~~~l~~f~~~ 704 (895)
..|..|-|+|+||-.+ .-.|+++|.-.|+ +.-..|. ...+.... .-.+|. .+|.|.|...|..
T Consensus 452 ~~p~rIE~fDiSh~~G----~~~VasmVvf~~G~p~k~~YR-~f~ik~~~-~~~DD~----------asM~Evl~RR~~r 515 (691)
T PRK14672 452 RIPTLIEGFDISHLGG----KYTVASLICFKNGAPDTKNYR-LFNLRAHD-TRIDDF----------ASMREAIARRYTH 515 (691)
T ss_pred CCCCeEEEEECCccCC----cCceEEEEEEECCccChhhCC-eeeccCCC-CCCchH----------HHHHHHHHHHhhc
Confidence 3578999999999753 2368888877764 2222332 22222110 012333 3778888766643
Q ss_pred hC--CCCCceEEEEeCCCCchhHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEEeecccceeec
Q 002661 705 SK--QRKPKQIIIFRDGVSESQFNQVLNIELEQIIKAYQHLGEADIPKFTVIVAQKNHHTKLFQ 766 (895)
Q Consensus 705 ~~--~~~P~~IIiyRDGvsegq~~~v~~~Ev~~i~~a~~~~~~~~~pkit~Ivv~Krh~~Rff~ 766 (895)
.. ..+|+-||| || +.||+.. .++++.+++- .+.+|-..||.-.-|+|
T Consensus 516 ~~~~~~~PDLilI--DG-GkgQl~a--------a~~vl~elgl----~i~vigLaKr~e~i~~~ 564 (691)
T PRK14672 516 TPEGYTLPDLILV--DG-GIGHVSA--------AQHVLDALGL----SIPLVGLAKRAEELFIP 564 (691)
T ss_pred ccccCCCCCEEEE--eC-CHHHHHH--------HHHHHHHcCC----CCcEEEEEecccEEEeC
Confidence 21 258999988 87 5577544 4667777653 36677778866444444
No 22
>PRK12306 uvrC excinuclease ABC subunit C; Reviewed
Probab=72.98 E-value=28 Score=41.21 Aligned_cols=107 Identities=27% Similarity=0.417 Sum_probs=62.8
Q ss_pred CCeEEEEEEeecCCCCCCCCCeEEEEEeecCC-CccceeEEEEEeccCcceecccccccccCCChHHHHHHHHHHHHHHh
Q 002661 627 TPTMILGMDVSHGSPGRSDIPSVAAVVGSQSW-PLISRYRAAVRTQSSKVEMIDALYKPIANGNDDGIIRELLLDFYRTS 705 (895)
Q Consensus 627 ~~tmiiG~Dv~H~~~~~~~~pSi~avV~S~d~-~~~~~y~~~~~~q~~~~e~i~~l~~~~~~~~~~~~~~~~l~~f~~~~ 705 (895)
.|.-|-|+|+||-.+ .-.|+++|.-.|+ |.-..|. ..++... +-.+|. .+|.|.|...|...
T Consensus 365 ~p~rIE~fDiSh~~G----~~~V~smVvf~~G~p~k~~YR-~f~Ik~~--~~~dDy----------~~m~Evl~RR~~r~ 427 (519)
T PRK12306 365 PPNVIECFDISHLSG----TSTVGSMVQFRNGKPDKKNYR-RFKIKTV--EGIDDF----------ASIAEVVRRRYSRL 427 (519)
T ss_pred CCCeEEEEECCccCC----CCceEEEEEEeCCccChhhcC-eeecCCC--CCCCHH----------HHHHHHHHHHHhhc
Confidence 356789999999753 2367888776664 2222332 2223211 112332 47778777655432
Q ss_pred CC---CCCceEEEEeCCCCchhHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEEeecccceeec
Q 002661 706 KQ---RKPKQIIIFRDGVSESQFNQVLNIELEQIIKAYQHLGEADIPKFTVIVAQKNHHTKLFQ 766 (895)
Q Consensus 706 ~~---~~P~~IIiyRDGvsegq~~~v~~~Ev~~i~~a~~~~~~~~~pkit~Ivv~Krh~~Rff~ 766 (895)
.. .+|+-||| || +-||+.. ..+++.+++- .+.+|-..|+. .++|.
T Consensus 428 ~~~~~~~PDLilI--DG-GkgQl~a--------a~~~l~elg~----~i~viglaK~~-e~i~~ 475 (519)
T PRK12306 428 LEENSELPDLIVI--DG-GKGQLSS--------AFKELRKLGL----KIPLISIAKRE-EEIYV 475 (519)
T ss_pred ccccCCCCCEEEE--eC-CHHHHHH--------HHHHHHHcCC----CCcEEEEEcCc-eEEEe
Confidence 11 48998888 87 5677654 4667776653 36677777865 44443
No 23
>PRK14670 uvrC excinuclease ABC subunit C; Provisional
Probab=71.19 E-value=36 Score=40.77 Aligned_cols=108 Identities=27% Similarity=0.330 Sum_probs=62.6
Q ss_pred CCeEEEEEEeecCCCCCCCCCeEEEEEeecCC-CccceeEEEEEeccCcceecccccccccCCChHHHHHHHHHHHHHHh
Q 002661 627 TPTMILGMDVSHGSPGRSDIPSVAAVVGSQSW-PLISRYRAAVRTQSSKVEMIDALYKPIANGNDDGIIRELLLDFYRTS 705 (895)
Q Consensus 627 ~~tmiiG~Dv~H~~~~~~~~pSi~avV~S~d~-~~~~~y~~~~~~q~~~~e~i~~l~~~~~~~~~~~~~~~~l~~f~~~~ 705 (895)
.|.-|-++|+||-.+ .-.|+++|.-.|+ +.-..|. ...+........+|. .+|.|.|...|+..
T Consensus 357 ~p~rIE~fDiSh~~G----~~~V~smVvf~~G~~~k~~YR-kf~ik~~~~~~~DD~----------a~M~Evl~RR~~r~ 421 (574)
T PRK14670 357 LPKTIEGFDIAHLNG----QKTVASLVTFKMGKPFKDGYR-VYKINSLLKGEIDDF----------KAIKEVISRRYSKL 421 (574)
T ss_pred CCCeEEEEECCccCC----CCceEEEEEEECCccChhhCC-eeeccCCCCCCCCHH----------HHHHHHHHHHHhhc
Confidence 457899999999753 2367888877664 2222332 222321100002332 47788887666542
Q ss_pred C---CCCCceEEEEeCCCCchhHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEEeecccc
Q 002661 706 K---QRKPKQIIIFRDGVSESQFNQVLNIELEQIIKAYQHLGEADIPKFTVIVAQKNHHT 762 (895)
Q Consensus 706 ~---~~~P~~IIiyRDGvsegq~~~v~~~Ev~~i~~a~~~~~~~~~pkit~Ivv~Krh~~ 762 (895)
. +.+|+-||| || +.||+.. ..+++.+++- ..++.+|-..|+.-+
T Consensus 422 ~~~~~~~PDLilI--DG-GkgQl~a--------a~~vl~~lg~--~~~i~v~gLaK~~e~ 468 (574)
T PRK14670 422 INEQLELPNLILI--DG-GKGQLNA--------AYSILKGLKI--ENKVKVCALAKKEET 468 (574)
T ss_pred ccccCCCCCEEEE--eC-CHHHHHH--------HHHHHHHcCC--CCCceEEEEecCCeE
Confidence 1 258999988 88 5677654 4566666643 223667777786533
No 24
>PRK14667 uvrC excinuclease ABC subunit C; Provisional
Probab=68.14 E-value=38 Score=40.58 Aligned_cols=107 Identities=26% Similarity=0.303 Sum_probs=63.9
Q ss_pred CCeEEEEEEeecCCCCCCCCCeEEEEEeecCC-CccceeEEEEEeccCcceecccccccccCCChHHHHHHHHHHHHHHh
Q 002661 627 TPTMILGMDVSHGSPGRSDIPSVAAVVGSQSW-PLISRYRAAVRTQSSKVEMIDALYKPIANGNDDGIIRELLLDFYRTS 705 (895)
Q Consensus 627 ~~tmiiG~Dv~H~~~~~~~~pSi~avV~S~d~-~~~~~y~~~~~~q~~~~e~i~~l~~~~~~~~~~~~~~~~l~~f~~~~ 705 (895)
.|.-|-++|+||-.+ .-.|+++|.-.|+ |.-..|. ...+... +-.+|. .+|.|.|...|...
T Consensus 360 ~p~rIE~fDiSh~~G----~~~V~smVvf~~G~~~k~~YR-~f~i~~~--~~~dD~----------~~m~Evl~RR~~r~ 422 (567)
T PRK14667 360 LPERIEGFDISHFYG----EFTVGSCVVWEDGSMNKKEYR-RYKIKTV--DGIDDY----------ASLREVLTRRARRY 422 (567)
T ss_pred CCCeEEEEECcccCC----CcceEEEEEEECCccChhhCC-eeecCCC--CCCCHH----------HHHHHHHHHHhhhc
Confidence 356889999999753 2368888877765 2222332 2223221 112332 47888887666542
Q ss_pred C---CCCCceEEEEeCCCCchhHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEEeecccceeec
Q 002661 706 K---QRKPKQIIIFRDGVSESQFNQVLNIELEQIIKAYQHLGEADIPKFTVIVAQKNHHTKLFQ 766 (895)
Q Consensus 706 ~---~~~P~~IIiyRDGvsegq~~~v~~~Ev~~i~~a~~~~~~~~~pkit~Ivv~Krh~~Rff~ 766 (895)
. +.+|+-||| || +-||+.. ..+++.+++- .|.+|-..|+. .++|.
T Consensus 423 ~~~~~~~PDLili--DG-GkgQl~a--------a~~~l~~lg~----~i~v~glaK~~-e~i~~ 470 (567)
T PRK14667 423 KEGENPMPDLWLI--DG-GKGQLSV--------GIEVRDRLGL----NIKVFSLAKKE-EILYT 470 (567)
T ss_pred cccCCCCCCEEEE--eC-CHHHHHH--------HHHHHHHcCC----CCcEEEEEecC-cEEEc
Confidence 1 248999988 88 5677644 4667777653 35577777765 44554
No 25
>PRK14671 uvrC excinuclease ABC subunit C; Provisional
Probab=65.84 E-value=41 Score=40.84 Aligned_cols=108 Identities=31% Similarity=0.328 Sum_probs=63.9
Q ss_pred CCeEEEEEEeecCCCCCCCCCeEEEEEeecCC-CccceeEEEEEeccCcceecccccccccCCChHHHHHHHHHHHHHHh
Q 002661 627 TPTMILGMDVSHGSPGRSDIPSVAAVVGSQSW-PLISRYRAAVRTQSSKVEMIDALYKPIANGNDDGIIRELLLDFYRTS 705 (895)
Q Consensus 627 ~~tmiiG~Dv~H~~~~~~~~pSi~avV~S~d~-~~~~~y~~~~~~q~~~~e~i~~l~~~~~~~~~~~~~~~~l~~f~~~~ 705 (895)
.|.-|-|+|+||-.+ .-.|+++|.-.|+ |.-..|. ...+... .-.+|. .+|.|.|...|...
T Consensus 414 ~p~rIE~fDiSh~~G----~~~V~smVvf~~G~~~k~~YR-~f~ik~~--~~~dDy----------~~m~Evl~RR~~r~ 476 (621)
T PRK14671 414 LPRRIECFDNSHFQG----TDYVSSMVCFVDGKPKKSDYR-KFKLRSF--EGSDDY----------AAMREVVTRRYSGS 476 (621)
T ss_pred CCCEEEEEECCccCC----CCceEEEEEEECCccChhhCC-eeecCCC--CCCCHH----------HHHHHHHHHHhhcc
Confidence 456789999999753 2367788776664 2223332 2223211 112332 47888887666432
Q ss_pred C---CCCCceEEEEeCCCCchhHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEEeecccceeecC
Q 002661 706 K---QRKPKQIIIFRDGVSESQFNQVLNIELEQIIKAYQHLGEADIPKFTVIVAQKNHHTKLFQA 767 (895)
Q Consensus 706 ~---~~~P~~IIiyRDGvsegq~~~v~~~Ev~~i~~a~~~~~~~~~pkit~Ivv~Krh~~Rff~~ 767 (895)
. +.+|+-||| || +.||+.. ..+++++++- .+.+|-..|+. .++|..
T Consensus 477 ~~~~~~~PDLilI--DG-GkgQl~a--------a~~vl~~lg~----~i~viglaK~~-e~i~~~ 525 (621)
T PRK14671 477 LAEELPLPDLIVI--DG-GKGQVNS--------AWKVLQELGL----SVPVIGLAKRL-EEIFTP 525 (621)
T ss_pred ccccCCCCCEEEE--eC-CHHHHHH--------HHHHHHHcCC----CCcEEEEEecc-cEEEeC
Confidence 1 258999998 88 5677654 4667776653 36677777844 445543
No 26
>PRK14669 uvrC excinuclease ABC subunit C; Provisional
Probab=64.39 E-value=47 Score=40.24 Aligned_cols=108 Identities=22% Similarity=0.297 Sum_probs=62.7
Q ss_pred CCeEEEEEEeecCCCCCCCCCeEEEEEeecCC-CccceeEEEEEeccCcceecccccccccCCChHHHHHHHHHHHHHHh
Q 002661 627 TPTMILGMDVSHGSPGRSDIPSVAAVVGSQSW-PLISRYRAAVRTQSSKVEMIDALYKPIANGNDDGIIRELLLDFYRTS 705 (895)
Q Consensus 627 ~~tmiiG~Dv~H~~~~~~~~pSi~avV~S~d~-~~~~~y~~~~~~q~~~~e~i~~l~~~~~~~~~~~~~~~~l~~f~~~~ 705 (895)
.|.-|-++|+||-.+ .-.|+++|.-.|+ +.-..|. ...+.. .+-.+|. .+|+|.|...|...
T Consensus 395 ~p~rIE~fDiSh~~G----~~~V~smVvf~~G~~~k~~YR-kf~Ik~--~~~~DDy----------a~M~Evl~RR~~r~ 457 (624)
T PRK14669 395 LPSRIECFDISHIQG----AETVASMVVWEDGKMKKSDYR-KFIIKT--VVGVDDF----------ASMREVVTRRYSRL 457 (624)
T ss_pred CCCeEEEEECCccCC----CCceEEEEEEECCccChhhCC-eeecCC--CCCCCHH----------HHHHHHHHHHhhcc
Confidence 456889999999753 2367787776664 2222332 222221 0112332 37778777655431
Q ss_pred C--C-CCCceEEEEeCCCCchhHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEEeecccceeec
Q 002661 706 K--Q-RKPKQIIIFRDGVSESQFNQVLNIELEQIIKAYQHLGEADIPKFTVIVAQKNHHTKLFQ 766 (895)
Q Consensus 706 ~--~-~~P~~IIiyRDGvsegq~~~v~~~Ev~~i~~a~~~~~~~~~pkit~Ivv~Krh~~Rff~ 766 (895)
. + .+|+-||| || +.||+.. ..+++.+++-+ .+.+|-..|+.. ++|-
T Consensus 458 ~~~~~~~PDLilI--DG-GkgQl~a--------a~~vl~elgl~---~i~vigLaK~~e-~i~~ 506 (624)
T PRK14669 458 QEEKQPMPGLVLI--DG-GLGQLHA--------AAEALEAIGIT---DQPLASIAKREE-IIYV 506 (624)
T ss_pred ccccCCCCCEEEE--eC-CHHHHHH--------HHHHHHHcCCC---CCcEEEEecCCe-EEEC
Confidence 1 1 48999988 88 5677654 46677766532 266777778764 4554
No 27
>PRK00558 uvrC excinuclease ABC subunit C; Validated
Probab=57.58 E-value=84 Score=38.05 Aligned_cols=100 Identities=28% Similarity=0.319 Sum_probs=58.7
Q ss_pred CCeEEEEEEeecCCCCCCCCCeEEEEEeecCC-CccceeEEEEEeccCcceecccccccccCCChHHHHHHHHHHHHHHh
Q 002661 627 TPTMILGMDVSHGSPGRSDIPSVAAVVGSQSW-PLISRYRAAVRTQSSKVEMIDALYKPIANGNDDGIIRELLLDFYRTS 705 (895)
Q Consensus 627 ~~tmiiG~Dv~H~~~~~~~~pSi~avV~S~d~-~~~~~y~~~~~~q~~~~e~i~~l~~~~~~~~~~~~~~~~l~~f~~~~ 705 (895)
.|.-|-++|+||-.+ .-.|+++|.-.|+ |.-..|. ...+... +-.+|. .+|+|.|...|...
T Consensus 382 ~p~rIE~fDiSh~~G----~~~V~smVvf~~G~~~k~~YR-~f~i~~~--~~~dDy----------a~m~Evl~RR~~~~ 444 (598)
T PRK00558 382 PPYRIECFDISHIQG----TATVASMVVFEDGGPDKSEYR-RYNIKGV--TGGDDY----------AAMREVLTRRYSRL 444 (598)
T ss_pred CCCEEEEEECCccCC----CcceEEEEEEECCccChhhCC-eeecCCC--CCCCHH----------HHHHHHHHHHhhcc
Confidence 467889999999753 2467888776664 2223332 2223221 112332 47788877665432
Q ss_pred ---CCCCCceEEEEeCCCCchhHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEEee
Q 002661 706 ---KQRKPKQIIIFRDGVSESQFNQVLNIELEQIIKAYQHLGEADIPKFTVIVAQK 758 (895)
Q Consensus 706 ---~~~~P~~IIiyRDGvsegq~~~v~~~Ev~~i~~a~~~~~~~~~pkit~Ivv~K 758 (895)
.+.+|+-||| || +.||+.. ..+++++++- .+.+|-..|
T Consensus 445 ~~~~~~~PDLili--DG-GkgQl~~--------a~~~l~~lg~----~i~v~glaK 485 (598)
T PRK00558 445 LKEFGPLPDLILI--DG-GKGQLNA--------AKEVLEELGL----DIPVVGLAK 485 (598)
T ss_pred ccccCCCCCEEEE--eC-CHHHHHH--------HHHHHHHCCC----CCcEEEEEe
Confidence 1258999998 88 5677654 4566776653 255555555
No 28
>cd06559 Endonuclease_V Endonuclease_V, a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases. Endonuclease_V (EndoV) is an enzyme that can initiate repair of all possible deaminated DNA bases. EndoV cleaves the DNA strand containing lesions at the second phosphodiester bond 3' to the lesion using Mg2+ as a cofactor. EndoV homologs are conserved throughout all domains of life from bacteria to humans. EndoV is encoded by the nfi gene and nfi null mutant mice have a phenotype prone to cancer. The ability of endonuclease V to recognize mismatches and abnormal replicative DNA structures suggests that the enzyme plays an important role in DNA metabolism. The details of downstream processing for the EndoV pathway remain unknown.
Probab=56.98 E-value=66 Score=33.25 Aligned_cols=42 Identities=12% Similarity=0.112 Sum_probs=30.5
Q ss_pred ccCCeeEEEecCCCCChHHHHHHHHHhhcccccccCCccccchhHHHHHHHH
Q 002661 803 SRPAHYHVLLDEIGFSPDDLQNLIHSLSYVYQRSTTAISIVAPICYAHLAAS 854 (895)
Q Consensus 803 arPt~Y~Vl~d~~~~~~d~lq~lt~~Lc~~y~~~~~~vsiPaP~~yA~~~a~ 854 (895)
.+|....+ ...++.|+--+++-.+|- .-++|.|+..||++|+
T Consensus 166 ~~PiyVS~---Gh~i~l~~A~~~v~~~~~-------~~r~Pep~R~Ad~~sr 207 (208)
T cd06559 166 VKPVYVSP---GHRIDLETAVELVLKCCK-------GYRLPEPTRLADLLSR 207 (208)
T ss_pred CCCEEEcC---CCCcCHHHHHHHHHHHcc-------CCCCCcHHHHHHHHhc
Confidence 45554443 345788888888886663 3679999999999985
No 29
>PRK14666 uvrC excinuclease ABC subunit C; Provisional
Probab=52.93 E-value=98 Score=37.81 Aligned_cols=101 Identities=22% Similarity=0.292 Sum_probs=59.4
Q ss_pred CCCeEEEEEEeecCCCCCCCCCeEEEEEeecCC-CccceeEEEEEeccCcceecccccccccCCChHHHHHHHHHHHHHH
Q 002661 626 DTPTMILGMDVSHGSPGRSDIPSVAAVVGSQSW-PLISRYRAAVRTQSSKVEMIDALYKPIANGNDDGIIRELLLDFYRT 704 (895)
Q Consensus 626 ~~~tmiiG~Dv~H~~~~~~~~pSi~avV~S~d~-~~~~~y~~~~~~q~~~~e~i~~l~~~~~~~~~~~~~~~~l~~f~~~ 704 (895)
..|.-|-++|+||-.+ .-.++|+|.-.|+ |.-..|. ...+... + .+|. .+|.|.+...+++
T Consensus 470 ~~p~rIE~~DiSh~~G----~~~v~~mVvf~~G~p~k~~YR-~f~i~~~--~-~dD~----------~~m~ev~~RR~~~ 531 (694)
T PRK14666 470 GPPHRIEAVDVSHTGG----RNTRVGMVVFEDGKPARDAYR-TYAFEDG--E-GDDY----------GTLAAWAGRRVES 531 (694)
T ss_pred CCCCEEEEEECcccCC----cCceEEEEEEECCccChhhCC-eeeCCCC--C-CChH----------HHHHHHHHHHhcC
Confidence 3567899999999753 2367777776664 2222332 1222211 1 1332 4777877765543
Q ss_pred hCCCCCceEEEEeCCCCchhHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEEee
Q 002661 705 SKQRKPKQIIIFRDGVSESQFNQVLNIELEQIIKAYQHLGEADIPKFTVIVAQK 758 (895)
Q Consensus 705 ~~~~~P~~IIiyRDGvsegq~~~v~~~Ev~~i~~a~~~~~~~~~pkit~Ivv~K 758 (895)
. ..+|+-||| || +.||+.. ..+++++++-+ ..+.+|-..|
T Consensus 532 ~-~~~PDLili--DG-G~gQl~a--------a~~~l~e~g~~--~~~~v~~laK 571 (694)
T PRK14666 532 G-PPWPDLLLV--DG-GRGQLAA--------VVRALEEAGMG--GLFAVASIAK 571 (694)
T ss_pred C-CCCCCEEEE--cC-CHHHHHH--------HHHHHHHcCCC--CCccEEEEec
Confidence 2 258998888 87 5677654 46667766532 2356666666
No 30
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=51.34 E-value=33 Score=31.91 Aligned_cols=69 Identities=22% Similarity=0.310 Sum_probs=46.1
Q ss_pred HHHHHHHHHHhCCCCCeEEEEEcCCCCCCcchHHHHHHhhcccCceeeeeec-cccChhHHHHHHHHHHhc
Q 002661 536 VERMFELITEKLPGPPQFILCVLPERKNSDIYGPWKKKSLSDFGIATQCISP-TKINDQYLTNVLLKINSK 605 (895)
Q Consensus 536 le~~~~~i~~~~~~~~~lvlvIlp~~~~~~~Y~~iK~~~~~~~gV~TQci~~-~~~~~q~~~Ni~lKiN~K 605 (895)
+...++.++.. +..|.|+++...+...+..|...|.-.+.+.||.+..+.. .....+-+...+.++|.-
T Consensus 16 l~~~i~~l~~~-~~~P~Laii~vg~d~~S~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~i~~lN~D 85 (117)
T PF00763_consen 16 LKEEIEKLKEK-GITPKLAIILVGDDPASISYVRSKQKAAEKLGIEFELIELPEDISEEELLELIEKLNED 85 (117)
T ss_dssp HHHHHHHHHHC-T---EEEEEEES--HHHHHHHHHHHHHHHHHT-EEEEEEE-TTSSHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHhc-CCCcEEEEEecCCChhHHHHHHHHHHHHHHcCCceEEEECCCCcCHHHHHHHHHHHhCC
Confidence 33444555554 3468888887765345788999998889999999999886 455667778888888854
No 31
>PRK14668 uvrC excinuclease ABC subunit C; Provisional
Probab=50.87 E-value=86 Score=37.75 Aligned_cols=100 Identities=24% Similarity=0.279 Sum_probs=59.5
Q ss_pred CCeEEEEEEeecCCCCCCCCCeEEEEEeecCC-CccceeEEEEEeccCcceecccccccccCCChHHHHHHHHHHHHHHh
Q 002661 627 TPTMILGMDVSHGSPGRSDIPSVAAVVGSQSW-PLISRYRAAVRTQSSKVEMIDALYKPIANGNDDGIIRELLLDFYRTS 705 (895)
Q Consensus 627 ~~tmiiG~Dv~H~~~~~~~~pSi~avV~S~d~-~~~~~y~~~~~~q~~~~e~i~~l~~~~~~~~~~~~~~~~l~~f~~~~ 705 (895)
.|.-|-++|+||-.+ .-.|+++|.-.|+ +.-..|. ...+.. + .+|. .+|.|.|...+++.
T Consensus 374 ~p~rIE~fDiSh~~G----~~~V~s~Vvf~~G~~~k~~YR-~f~i~~-~---~dD~----------~~m~Evl~RR~~r~ 434 (577)
T PRK14668 374 RPERIEGFDVSHAQG----RAVVGSNVCFVDGSAETADYR-RKKLTE-R---NDDY----------ANMRELVRWRAERA 434 (577)
T ss_pred CCCEEEEEECCccCC----CCceEEEEEEECCccCHHHcC-eecCCC-C---CChH----------HHHHHHHHHHHHhh
Confidence 356789999999753 2367888877664 2222332 222322 1 2332 37777776655431
Q ss_pred C-----CCCCceEEEEeCCCCchhHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEEeecc
Q 002661 706 K-----QRKPKQIIIFRDGVSESQFNQVLNIELEQIIKAYQHLGEADIPKFTVIVAQKNH 760 (895)
Q Consensus 706 ~-----~~~P~~IIiyRDGvsegq~~~v~~~Ev~~i~~a~~~~~~~~~pkit~Ivv~Krh 760 (895)
. +.+|+-||| || +-||+.. ..+++.+++- .+.+|-..|+.
T Consensus 435 ~~~~~~~~~PDLili--DG-G~gQl~a--------a~~~l~elg~----~i~v~glaK~~ 479 (577)
T PRK14668 435 VEGRDDRPDPDLLLI--DG-GDGQLGA--------ARDALAETGW----DVPAIALAKAE 479 (577)
T ss_pred hccccCCCCCCEEEE--eC-CHHHHHH--------HHHHHHHcCC----CCcEEEEEcCC
Confidence 1 258999988 87 5577544 4667777653 35567667754
No 32
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=44.07 E-value=65 Score=35.13 Aligned_cols=67 Identities=16% Similarity=0.194 Sum_probs=48.2
Q ss_pred HHHHHHHHhCCCCCeEEEEEcCCCCCCcchHHHHHHhhcccCceeeeeec-cccChhHHHHHHHHHHh
Q 002661 538 RMFELITEKLPGPPQFILCVLPERKNSDIYGPWKKKSLSDFGIATQCISP-TKINDQYLTNVLLKINS 604 (895)
Q Consensus 538 ~~~~~i~~~~~~~~~lvlvIlp~~~~~~~Y~~iK~~~~~~~gV~TQci~~-~~~~~q~~~Ni~lKiN~ 604 (895)
..++.++++.+..|.|+++...++..+..|...|...+.+.||.+..+.. ......-+.+++.++|.
T Consensus 19 ~~v~~l~~~~g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~ 86 (293)
T PRK14185 19 AEVAEIVAKGGKRPHLAAILVGHDGGSETYVANKVKACEECGFKSSLIRYESDVTEEELLAKVRELNQ 86 (293)
T ss_pred HHHHHHHhccCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 33444544433468898887766566788999999899999999998875 34444556677888884
No 33
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=41.97 E-value=90 Score=33.93 Aligned_cols=65 Identities=20% Similarity=0.276 Sum_probs=46.7
Q ss_pred HHHHHHhCCCCCeEEEEEcCCCCCCcchHHHHHHhhcccCceeeeeec-cccChhHHHHHHHHHHh
Q 002661 540 FELITEKLPGPPQFILCVLPERKNSDIYGPWKKKSLSDFGIATQCISP-TKINDQYLTNVLLKINS 604 (895)
Q Consensus 540 ~~~i~~~~~~~~~lvlvIlp~~~~~~~Y~~iK~~~~~~~gV~TQci~~-~~~~~q~~~Ni~lKiN~ 604 (895)
++.++++.+..|.|+++...+...+..|...|.-.+.+.||.+..+.. ......-+.+.+.++|.
T Consensus 22 v~~l~~~~g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~~l~~~I~~LN~ 87 (288)
T PRK14171 22 IQELKSQTNASPKLAIVLVGDNPASIIYVKNKIKNAHKIGIDTLLVNLSTTIHTNDLISKINELNL 87 (288)
T ss_pred HHHHHhccCCCCeEEEEEeCCCccHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcC
Confidence 344444323468888877766466889999988888999999988875 44555566777888874
No 34
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=41.01 E-value=98 Score=33.77 Aligned_cols=66 Identities=15% Similarity=0.257 Sum_probs=47.7
Q ss_pred HHHHHHhCCCCCeEEEEEcCCCCCCcchHHHHHHhhcccCceeeeeec-cccChhHHHHHHHHHHhc
Q 002661 540 FELITEKLPGPPQFILCVLPERKNSDIYGPWKKKSLSDFGIATQCISP-TKINDQYLTNVLLKINSK 605 (895)
Q Consensus 540 ~~~i~~~~~~~~~lvlvIlp~~~~~~~Y~~iK~~~~~~~gV~TQci~~-~~~~~q~~~Ni~lKiN~K 605 (895)
++.++.+.+-.|.|+++...+...+..|...|...+.+.||.+..+.. ......-+..++.++|.-
T Consensus 22 v~~l~~~~g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~e~~l~~~I~~lN~d 88 (294)
T PRK14187 22 IDDLKRQHNLFPCLIVILVGDDPASQLYVRNKQRKAEMLGLRSETILLPSTISESSLIEKINELNND 88 (294)
T ss_pred HHHHHHccCCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 344443322357888887766567889999999999999999999875 344555677888888843
No 35
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=40.56 E-value=95 Score=33.77 Aligned_cols=68 Identities=16% Similarity=0.307 Sum_probs=48.7
Q ss_pred HHHHHHHHHhCCCCCeEEEEEcCCCCCCcchHHHHHHhhcccCceeeeeec-cccChhHHHHHHHHHHh
Q 002661 537 ERMFELITEKLPGPPQFILCVLPERKNSDIYGPWKKKSLSDFGIATQCISP-TKINDQYLTNVLLKINS 604 (895)
Q Consensus 537 e~~~~~i~~~~~~~~~lvlvIlp~~~~~~~Y~~iK~~~~~~~gV~TQci~~-~~~~~q~~~Ni~lKiN~ 604 (895)
...++.++++.+..|.|+++...+...+..|...|.-.+.+.||.+..+.. ......-+.+.+.++|.
T Consensus 18 ~~~v~~l~~~~g~~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~ 86 (286)
T PRK14184 18 KTEVAALTARHGRAPGLAVILVGEDPASQVYVRNKERACEDAGIVSEAFRLPADTTQEELEDLIAELNA 86 (286)
T ss_pred HHHHHHHHhccCCCCEEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 333444444423468888887766466789999999899999999988875 44555567788888885
No 36
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=39.90 E-value=1.1e+02 Score=33.17 Aligned_cols=66 Identities=15% Similarity=0.191 Sum_probs=48.0
Q ss_pred HHHHHHhCCCCCeEEEEEcCCCCCCcchHHHHHHhhcccCceeeeeec-cccChhHHHHHHHHHHhc
Q 002661 540 FELITEKLPGPPQFILCVLPERKNSDIYGPWKKKSLSDFGIATQCISP-TKINDQYLTNVLLKINSK 605 (895)
Q Consensus 540 ~~~i~~~~~~~~~lvlvIlp~~~~~~~Y~~iK~~~~~~~gV~TQci~~-~~~~~q~~~Ni~lKiN~K 605 (895)
++.++++.+..|.|+++..-+...+..|...|.-.+.+.||.+-.+.. ......-+.+.+.++|.-
T Consensus 28 i~~l~~~~g~~P~Laii~vg~d~aS~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~LN~D 94 (287)
T PRK14176 28 VERLKSNRGITPGLATILVGDDPASKMYVRLKHKACERVGIRAEDQFLPADTTQEELLELIDSLNKR 94 (287)
T ss_pred HHHHHhccCCCCeEEEEEECCCcchHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 344443322358898887766567889999999999999999988875 445555677888888853
No 37
>KOG3123 consensus Diphthine synthase [Translation, ribosomal structure and biogenesis]
Probab=39.72 E-value=37 Score=34.44 Aligned_cols=47 Identities=17% Similarity=0.319 Sum_probs=33.0
Q ss_pred CCeEEEEEcCCCCCCcchHHHHHHhhcccCceeeeeeccccChhHHHHHH
Q 002661 550 PPQFILCVLPERKNSDIYGPWKKKSLSDFGIATQCISPTKINDQYLTNVL 599 (895)
Q Consensus 550 ~~~lvlvIlp~~~~~~~Y~~iK~~~~~~~gV~TQci~~~~~~~q~~~Ni~ 599 (895)
-.+++++--.. +....|+.||+ ..+.|..|-|++.-+.+.|.+.|++
T Consensus 131 tVSiv~ftd~w-rP~SfydkI~~--Nr~~glHTLcLLDIkvkEqs~enl~ 177 (272)
T KOG3123|consen 131 TVSIVFFTDNW-RPESFYDKIKE--NRQLGLHTLCLLDIKVKEQSVENLA 177 (272)
T ss_pred EEEEEEEccCc-CchhHHHHHHH--hhhcCceeEEEEEEeeccHHHHHHh
Confidence 34555544434 55688999986 6889999999997666666665554
No 38
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=38.44 E-value=1e+02 Score=33.46 Aligned_cols=55 Identities=16% Similarity=0.245 Sum_probs=43.5
Q ss_pred CCeEEEEEcCCCCCCcchHHHHHHhhcccCceeeeeec-cccChhHHHHHHHHHHh
Q 002661 550 PPQFILCVLPERKNSDIYGPWKKKSLSDFGIATQCISP-TKINDQYLTNVLLKINS 604 (895)
Q Consensus 550 ~~~lvlvIlp~~~~~~~Y~~iK~~~~~~~gV~TQci~~-~~~~~q~~~Ni~lKiN~ 604 (895)
.|.|+++...+...+..|...|.-.+.+.||.+..+.. ......-+.+.+.++|.
T Consensus 31 ~P~Laii~vgdd~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~ 86 (281)
T PRK14183 31 VPGLAVILVGDDPASHTYVKMKAKACDRVGIYSITHEMPSTISQKEILETIAMMNN 86 (281)
T ss_pred CCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 57898887776567889999999999999999988875 44455557788888884
No 39
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=36.56 E-value=1e+02 Score=33.46 Aligned_cols=68 Identities=12% Similarity=0.204 Sum_probs=48.2
Q ss_pred HHHHHHHHhCCCCCeEEEEEcCCCCCCcchHHHHHHhhcccCceeeeeec-cccChhHHHHHHHHHHhc
Q 002661 538 RMFELITEKLPGPPQFILCVLPERKNSDIYGPWKKKSLSDFGIATQCISP-TKINDQYLTNVLLKINSK 605 (895)
Q Consensus 538 ~~~~~i~~~~~~~~~lvlvIlp~~~~~~~Y~~iK~~~~~~~gV~TQci~~-~~~~~q~~~Ni~lKiN~K 605 (895)
..++.++++....|.|+++..-+...+..|...|.-.+.+.||.+..+.. ......-+...+.++|.-
T Consensus 21 ~~v~~l~~~~~~~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~s~~el~~~I~~lN~d 89 (285)
T PRK10792 21 QKVQARVAAGLRAPGLAVVLVGSDPASQVYVASKRKACEEVGFVSRSYDLPETTSEAELLALIDELNAD 89 (285)
T ss_pred HHHHHHHHcCCCCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 33444444322357888887765456788999999899999999998876 344555566778888854
No 40
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=36.55 E-value=1.1e+02 Score=34.17 Aligned_cols=66 Identities=15% Similarity=0.226 Sum_probs=47.4
Q ss_pred HHHHHHhCCCCCeEEEEEcCCCCCCcchHHHHHHhhcccCceeeeeec-cccChhHHHHHHHHHHhc
Q 002661 540 FELITEKLPGPPQFILCVLPERKNSDIYGPWKKKSLSDFGIATQCISP-TKINDQYLTNVLLKINSK 605 (895)
Q Consensus 540 ~~~i~~~~~~~~~lvlvIlp~~~~~~~Y~~iK~~~~~~~gV~TQci~~-~~~~~q~~~Ni~lKiN~K 605 (895)
++.++++.+..|.|+++...++..+..|...|...+.+.||.+..+.. ......-+..++.++|.-
T Consensus 76 v~~l~~~~g~~P~LaiIlvGddpaS~~Yv~~k~K~a~~~GI~~~~~~l~~~~te~ell~~I~~lN~D 142 (345)
T PLN02897 76 VRKMKKAVGKVPGLAVVLVGQQRDSQTYVRNKIKACEETGIKSLLAELPEDCTEGQILSALRKFNED 142 (345)
T ss_pred HHHHHhccCCCCeEEEEEeCCChHHHHHHHHHHHHHHhcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 344444323458898888876567889999999999999999988875 344444566788888743
No 41
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=36.31 E-value=1.1e+02 Score=33.30 Aligned_cols=74 Identities=15% Similarity=0.181 Sum_probs=52.9
Q ss_pred HHHHHHhCCCCCeEEEEEcCCCCCCcchHHHHHHhhcccCceeeeeecc-ccChhHHHHHHHHHHhc--cCCccccc
Q 002661 540 FELITEKLPGPPQFILCVLPERKNSDIYGPWKKKSLSDFGIATQCISPT-KINDQYLTNVLLKINSK--LGGINSLL 613 (895)
Q Consensus 540 ~~~i~~~~~~~~~lvlvIlp~~~~~~~Y~~iK~~~~~~~gV~TQci~~~-~~~~q~~~Ni~lKiN~K--lGG~n~~~ 613 (895)
++.++++....|.|+++...+...+..|..+|...+.+.||.+..+... .....-+..++.++|.. +-|++..+
T Consensus 23 i~~~~~~~~~~p~L~~i~vg~~~~s~~Y~~~~~~~~~~~Gi~~~~~~l~~~~~~~~l~~~i~~Ln~d~~v~Gi~Vql 99 (283)
T PRK14192 23 VEALKAKTGRTPILATILVGDDPASATYVRMKGNACRRVGMDSLKVELPQETTTEQLLAKIEELNANPDVHGILLQH 99 (283)
T ss_pred HHHHHhccCCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeC
Confidence 3444433223588888877665678899999999999999999888763 34455578888889875 56776543
No 42
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=36.00 E-value=1.2e+02 Score=32.88 Aligned_cols=65 Identities=20% Similarity=0.234 Sum_probs=47.1
Q ss_pred HHHHHHhCCCCCeEEEEEcCCCCCCcchHHHHHHhhcccCceeeeeec-cccChhHHHHHHHHHHh
Q 002661 540 FELITEKLPGPPQFILCVLPERKNSDIYGPWKKKSLSDFGIATQCISP-TKINDQYLTNVLLKINS 604 (895)
Q Consensus 540 ~~~i~~~~~~~~~lvlvIlp~~~~~~~Y~~iK~~~~~~~gV~TQci~~-~~~~~q~~~Ni~lKiN~ 604 (895)
++.++++....|.|+++...+...+..|...|...+.+.||.+..+.. ......-+.+.+.++|.
T Consensus 23 i~~l~~~~~~~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~s~~el~~~I~~lN~ 88 (284)
T PRK14177 23 IEERKTKNKRIPKLATILVGNNPASETYVSMKVKACHKVGMGSEMIRLKEQTTTEELLGVIDKLNL 88 (284)
T ss_pred HHHHHhcCCCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 344444322357888877765456788999998889999999999885 44455567788888886
No 43
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=35.97 E-value=1.2e+02 Score=33.99 Aligned_cols=65 Identities=20% Similarity=0.262 Sum_probs=47.1
Q ss_pred HHHHHHhCCCCCeEEEEEcCCCCCCcchHHHHHHhhcccCceeeeeec-cccChhHHHHHHHHHHh
Q 002661 540 FELITEKLPGPPQFILCVLPERKNSDIYGPWKKKSLSDFGIATQCISP-TKINDQYLTNVLLKINS 604 (895)
Q Consensus 540 ~~~i~~~~~~~~~lvlvIlp~~~~~~~Y~~iK~~~~~~~gV~TQci~~-~~~~~q~~~Ni~lKiN~ 604 (895)
++.++++.+..|.|+++...++..+..|...|...+.+.||.+..+.. ......-+.+.+.++|.
T Consensus 93 v~~lk~~~g~~P~LaiIlvG~dpaS~~Yv~~k~K~~e~~GI~~~~~~lpe~~te~ell~~I~~LN~ 158 (364)
T PLN02616 93 VSRMKESIGVVPGLAVILVGDRKDSATYVRNKKKACDSVGINSFEVRLPEDSTEQEVLKFISGFNN 158 (364)
T ss_pred HHHHHHcCCCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcC
Confidence 344444433358898888776567889999999899999999988874 44455556677888874
No 44
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=35.85 E-value=1.2e+02 Score=33.30 Aligned_cols=66 Identities=18% Similarity=0.225 Sum_probs=47.7
Q ss_pred HHHHHHhCCCCCeEEEEEcCCCCCCcchHHHHHHhhcccCceeeeeec-cccChhHHHHHHHHHHhc
Q 002661 540 FELITEKLPGPPQFILCVLPERKNSDIYGPWKKKSLSDFGIATQCISP-TKINDQYLTNVLLKINSK 605 (895)
Q Consensus 540 ~~~i~~~~~~~~~lvlvIlp~~~~~~~Y~~iK~~~~~~~gV~TQci~~-~~~~~q~~~Ni~lKiN~K 605 (895)
++.++++.+..|.|+++...+...+..|...|...+.+.||.+-.+.. ......-+.+++.++|.-
T Consensus 22 v~~l~~~~g~~p~LaiI~vgdd~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D 88 (297)
T PRK14186 22 IESNLPKAGRPPGLAVLRVGDDPASAVYVRNKEKACARVGIASFGKHLPADTSQAEVEALIAQLNQD 88 (297)
T ss_pred HHHHHHhcCCCceEEEEEeCCChHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 344444323357888877766456788999999899999999988875 445555677888888864
No 45
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=35.80 E-value=1.3e+02 Score=32.90 Aligned_cols=65 Identities=22% Similarity=0.354 Sum_probs=46.5
Q ss_pred HHHHHhCCCCCeEEEEEcCCCCCCcchHHHHHHhhcccCceeeeeec-cccChhHHHHHHHHHHhc
Q 002661 541 ELITEKLPGPPQFILCVLPERKNSDIYGPWKKKSLSDFGIATQCISP-TKINDQYLTNVLLKINSK 605 (895)
Q Consensus 541 ~~i~~~~~~~~~lvlvIlp~~~~~~~Y~~iK~~~~~~~gV~TQci~~-~~~~~q~~~Ni~lKiN~K 605 (895)
+.++++.+..|.|+++..-+...+..|...|.-.+.+.||.+-.+.. ......-+...+.++|.-
T Consensus 30 ~~l~~~~g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~s~~el~~~I~~lN~D 95 (299)
T PLN02516 30 AQLSEKHGKVPGLAVVIVGSRKDSQTYVNMKRKACAEVGIKSFDVDLPENISEAELISKVHELNAN 95 (299)
T ss_pred HHHHHcCCCCCeEEEEEECCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 33433323357888877766466889999999899999999988875 455555567778888754
No 46
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=35.05 E-value=1.3e+02 Score=32.95 Aligned_cols=66 Identities=15% Similarity=0.194 Sum_probs=47.1
Q ss_pred HHHHHHhCCCCCeEEEEEcCCCCCCcchHHHHHHhhcccCceeeeeec-cccChhHHHHHHHHHHhc
Q 002661 540 FELITEKLPGPPQFILCVLPERKNSDIYGPWKKKSLSDFGIATQCISP-TKINDQYLTNVLLKINSK 605 (895)
Q Consensus 540 ~~~i~~~~~~~~~lvlvIlp~~~~~~~Y~~iK~~~~~~~gV~TQci~~-~~~~~q~~~Ni~lKiN~K 605 (895)
++.++.+.+..|.|+++...+...+..|...|.-.+.+.||.+-.+.. ......-+.+++.++|.-
T Consensus 22 v~~l~~~~g~~p~La~i~vg~~~~s~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~i~~lN~d 88 (296)
T PRK14188 22 VARLKAAHGVTPGLAVVLVGEDPASQVYVRSKGKQTKEAGMASFEHKLPADTSQAELLALIARLNAD 88 (296)
T ss_pred HHHHHHccCCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 344443322358898887766466788999999899999999888775 344555566788888855
No 47
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=35.02 E-value=1.2e+02 Score=33.16 Aligned_cols=66 Identities=20% Similarity=0.283 Sum_probs=47.4
Q ss_pred HHHHHHhCCCCCeEEEEEcCCCCCCcchHHHHHHhhcccCceeeeeec-cccChhHHHHHHHHHHhc
Q 002661 540 FELITEKLPGPPQFILCVLPERKNSDIYGPWKKKSLSDFGIATQCISP-TKINDQYLTNVLLKINSK 605 (895)
Q Consensus 540 ~~~i~~~~~~~~~lvlvIlp~~~~~~~Y~~iK~~~~~~~gV~TQci~~-~~~~~q~~~Ni~lKiN~K 605 (895)
++.++++.+..|.|+++...+...+..|...|.-.+.+.||.+-.+.. ......-+.+.+.++|.-
T Consensus 21 v~~l~~~~g~~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D 87 (295)
T PRK14174 21 VEAYRAKTGKVPGLTVIIVGEDPASQVYVRNKAKSCKEIGMNSTVIELPADTTEEHLLKKIEDLNND 87 (295)
T ss_pred HHHHHHccCCCCeEEEEEeCCChHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 334443322358898887766566889999999999999999988875 344555567778888853
No 48
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=34.96 E-value=1.2e+02 Score=32.94 Aligned_cols=65 Identities=17% Similarity=0.275 Sum_probs=46.1
Q ss_pred HHHHHHhCCCCCeEEEEEcCCCCCCcchHHHHHHhhcccCceeeeeec-cccChhHHHHHHHHHHh
Q 002661 540 FELITEKLPGPPQFILCVLPERKNSDIYGPWKKKSLSDFGIATQCISP-TKINDQYLTNVLLKINS 604 (895)
Q Consensus 540 ~~~i~~~~~~~~~lvlvIlp~~~~~~~Y~~iK~~~~~~~gV~TQci~~-~~~~~q~~~Ni~lKiN~ 604 (895)
++.++++.+..|.|+++...+...+..|...|.-.+.+.||.+..+.. ......-+.+++.++|.
T Consensus 21 v~~~~~~~g~~P~La~I~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~ 86 (282)
T PRK14180 21 VQEYKHHTAITPKLVAIIVGNDPASKTYVASKEKACAQVGIDSQVITLPEHTTESELLELIDQLNN 86 (282)
T ss_pred HHHHHhccCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 334443322357888877765456788999998899999999988875 34445556788888884
No 49
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=34.22 E-value=1.2e+02 Score=33.19 Aligned_cols=69 Identities=19% Similarity=0.192 Sum_probs=48.3
Q ss_pred HHHHHHHHHHhCCCCCeEEEEEcCCCCCCcchHHHHHHhhcccCceeeeeec-cccChhHHHHHHHHHHh
Q 002661 536 VERMFELITEKLPGPPQFILCVLPERKNSDIYGPWKKKSLSDFGIATQCISP-TKINDQYLTNVLLKINS 604 (895)
Q Consensus 536 le~~~~~i~~~~~~~~~lvlvIlp~~~~~~~Y~~iK~~~~~~~gV~TQci~~-~~~~~q~~~Ni~lKiN~ 604 (895)
+...++.++++.+..|.|+++..-+...+..|...|...+.+.||.+-.+.. ......-+...+.++|.
T Consensus 19 lk~~v~~l~~~~g~~P~LaiI~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~t~~el~~~I~~lN~ 88 (297)
T PRK14168 19 IRGEVAELKEKYGKVPGLVTILVGESPASLSYVTLKIKTAHRLGFHEIQDNQSVDITEEELLALIDKYNN 88 (297)
T ss_pred HHHHHHHHHHcCCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3333444444423358888887766456789999999999999999987764 44555556678888874
No 50
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=32.99 E-value=1.4e+02 Score=32.46 Aligned_cols=65 Identities=12% Similarity=0.229 Sum_probs=47.0
Q ss_pred HHHHHHHhCCCCCeEEEEEcCCCCCCcchHHHHHHhhcccCceeeeeec-cccChhHHHHHHHHHHh
Q 002661 539 MFELITEKLPGPPQFILCVLPERKNSDIYGPWKKKSLSDFGIATQCISP-TKINDQYLTNVLLKINS 604 (895)
Q Consensus 539 ~~~~i~~~~~~~~~lvlvIlp~~~~~~~Y~~iK~~~~~~~gV~TQci~~-~~~~~q~~~Ni~lKiN~ 604 (895)
.++.++++ +..|.|+++...+...+..|...|...+.+.||.+..+.. ......-+.+.+.++|.
T Consensus 20 ~v~~l~~~-g~~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~ 85 (282)
T PRK14169 20 TVAKLAQQ-DVTPTLAVVLVGSDPASEVYVRNKQRRAEDIGVRSLMFRLPEATTQADLLAKVAELNH 85 (282)
T ss_pred HHHHHHhC-CCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34444433 2357888887766567889999999999999999988875 34445556678888885
No 51
>PRK00766 hypothetical protein; Provisional
Probab=32.41 E-value=74 Score=32.45 Aligned_cols=36 Identities=28% Similarity=0.355 Sum_probs=29.3
Q ss_pred CCCChHHHHHHHHHhhcccccccCCccccchhHHHHHHHHhhc
Q 002661 815 IGFSPDDLQNLIHSLSYVYQRSTTAISIVAPICYAHLAASQMG 857 (895)
Q Consensus 815 ~~~~~d~lq~lt~~Lc~~y~~~~~~vsiPaP~~yA~~~a~r~~ 857 (895)
.+++.++-.+++-.+|.-| ++|.|+..||++|....
T Consensus 152 ~gi~l~~A~~lv~~~~~~~-------riPEPlR~Ahlia~~~~ 187 (194)
T PRK00766 152 AGIDPETAAEIVRLTSTRS-------LIPEPLRLAHLIASGVM 187 (194)
T ss_pred cCCCHHHHHHHHHHhccCC-------CCchhhHHHHHHHHHhh
Confidence 5688999999998888533 68999999999986554
No 52
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=31.38 E-value=1.6e+02 Score=32.01 Aligned_cols=66 Identities=15% Similarity=0.258 Sum_probs=46.9
Q ss_pred HHHHHHhCCCCCeEEEEEcCCCCCCcchHHHHHHhhcccCceeeeeec-cccChhHHHHHHHHHHhc
Q 002661 540 FELITEKLPGPPQFILCVLPERKNSDIYGPWKKKSLSDFGIATQCISP-TKINDQYLTNVLLKINSK 605 (895)
Q Consensus 540 ~~~i~~~~~~~~~lvlvIlp~~~~~~~Y~~iK~~~~~~~gV~TQci~~-~~~~~q~~~Ni~lKiN~K 605 (895)
++.++.+.+..|.|+++..-+...+..|...|.-.+.+.||.+-.+.. ......-+.+++.++|.-
T Consensus 22 v~~l~~~~g~~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~d 88 (284)
T PRK14179 22 VAKLKEEKGIVPGLVVILVGDNPASQVYVRNKERSALAAGFKSEVVRLPETISQEELLDLIERYNQD 88 (284)
T ss_pred HHHHHhccCCCceEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 334433322357888887766456789999998888999999988775 445555677888888853
No 53
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=31.35 E-value=1.4e+02 Score=32.46 Aligned_cols=64 Identities=14% Similarity=0.172 Sum_probs=46.2
Q ss_pred HHHHHHhCCCCCeEEEEEcCCCCCCcchHHHHHHhhcccCceeeeeecc-ccChhHHHHHHHHHHh
Q 002661 540 FELITEKLPGPPQFILCVLPERKNSDIYGPWKKKSLSDFGIATQCISPT-KINDQYLTNVLLKINS 604 (895)
Q Consensus 540 ~~~i~~~~~~~~~lvlvIlp~~~~~~~Y~~iK~~~~~~~gV~TQci~~~-~~~~q~~~Ni~lKiN~ 604 (895)
++.++++ +-.|.|+++...+...+..|...|.-.+.+.||.+..+... .....-+.+.+.++|.
T Consensus 21 v~~l~~~-g~~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~t~~~l~~~I~~lN~ 85 (282)
T PRK14166 21 NQFLKSK-GIESCLAVILVGDNPASQTYVKSKAKACEECGIKSLVYHLNENTTQNELLALINTLNH 85 (282)
T ss_pred HHHHHhC-CCCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3444433 23578888777664567889999998999999999999863 3445556678888884
No 54
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=31.33 E-value=1.4e+02 Score=32.37 Aligned_cols=56 Identities=16% Similarity=0.236 Sum_probs=43.1
Q ss_pred CCeEEEEEcCCCCCCcchHHHHHHhhcccCceeeeeec-cccChhHHHHHHHHHHhc
Q 002661 550 PPQFILCVLPERKNSDIYGPWKKKSLSDFGIATQCISP-TKINDQYLTNVLLKINSK 605 (895)
Q Consensus 550 ~~~lvlvIlp~~~~~~~Y~~iK~~~~~~~gV~TQci~~-~~~~~q~~~Ni~lKiN~K 605 (895)
.|.|+++...+...+..|...|...+.+.||.+..+.. ......-+.+.+.++|.-
T Consensus 32 ~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~t~~el~~~I~~lN~D 88 (284)
T PRK14193 32 TPGLGTVLVGDDPGSQAYVRGKHRDCAEVGITSIRRDLPADATQEELNAVIDELNAD 88 (284)
T ss_pred CceEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 57888877766456789999999999999999988875 344555566777888754
No 55
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=31.11 E-value=1.5e+02 Score=32.53 Aligned_cols=55 Identities=15% Similarity=0.196 Sum_probs=43.1
Q ss_pred CCeEEEEEcCCCCCCcchHHHHHHhhcccCceeeeeec-cccChhHHHHHHHHHHh
Q 002661 550 PPQFILCVLPERKNSDIYGPWKKKSLSDFGIATQCISP-TKINDQYLTNVLLKINS 604 (895)
Q Consensus 550 ~~~lvlvIlp~~~~~~~Y~~iK~~~~~~~gV~TQci~~-~~~~~q~~~Ni~lKiN~ 604 (895)
.|.|+++...++..+..|...|...+.+.||.+-.+.. ......-+.+.+.++|.
T Consensus 33 ~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~t~~~l~~~I~~lN~ 88 (301)
T PRK14194 33 EPALAVILVGNDPASQVYVRNKILRAEEAGIRSLEHRLPADTSQARLLALIAELNA 88 (301)
T ss_pred CCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcC
Confidence 58898887766566788999999899999999988875 44455556678888874
No 56
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=30.65 E-value=1.6e+02 Score=32.02 Aligned_cols=66 Identities=14% Similarity=0.263 Sum_probs=47.1
Q ss_pred HHHHHHhCCCCCeEEEEEcCCCCCCcchHHHHHHhhcccCceeeeeec-cccChhHHHHHHHHHHhc
Q 002661 540 FELITEKLPGPPQFILCVLPERKNSDIYGPWKKKSLSDFGIATQCISP-TKINDQYLTNVLLKINSK 605 (895)
Q Consensus 540 ~~~i~~~~~~~~~lvlvIlp~~~~~~~Y~~iK~~~~~~~gV~TQci~~-~~~~~q~~~Ni~lKiN~K 605 (895)
++.++++.+..|.|+++..-+...+..|...|...+.+.||.+-.+.. ......-+.+.+.++|.-
T Consensus 21 v~~l~~~~g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D 87 (285)
T PRK14191 21 IQILTAQTGKRPKLAVILVGKDPASQTYVNMKIKACERVGMDSDLHTLQENTTEAELLSLIKDLNTD 87 (285)
T ss_pred HHHHHhcCCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 344443323367888887766466889999999999999999988875 344555567888888854
No 57
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=30.47 E-value=1.6e+02 Score=31.95 Aligned_cols=69 Identities=19% Similarity=0.188 Sum_probs=46.9
Q ss_pred HHHHHHHHHhCCCCCeEEEEEcCCCCCCcchHHHHHHhhcccCceeeeeec-cccChhHHHHHHHHHHhc
Q 002661 537 ERMFELITEKLPGPPQFILCVLPERKNSDIYGPWKKKSLSDFGIATQCISP-TKINDQYLTNVLLKINSK 605 (895)
Q Consensus 537 e~~~~~i~~~~~~~~~lvlvIlp~~~~~~~Y~~iK~~~~~~~gV~TQci~~-~~~~~q~~~Ni~lKiN~K 605 (895)
...++.++.+....|.|+++...+...+..|...|.-.+.+.||.+..+.. ......-+.+.+.++|.-
T Consensus 19 k~~i~~l~~~g~~~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~d 88 (278)
T PRK14172 19 KNFVEERKENGLSIPKIASILVGNDGGSIYYMNNQEKVANSLGIDFKKIKLDESISEEDLINEIEELNKD 88 (278)
T ss_pred HHHHHHHHhcCCCCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 333444443311247888887766456788999988888999999988875 344444566777888854
No 58
>PF02772 S-AdoMet_synt_M: S-adenosylmethionine synthetase, central domain; InterPro: IPR022629 The three domains of S-adenosylmethionine synthetase have the same alpha+beta fold. This entry represents the central domain and is found in association with PF00438 from PFAM and PF02773 from PFAM. S-adenosylmethionine synthetase (MAT, 2.5.1.6 from EC) is the enzyme that catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP []. AdoMet is an important methyl donor for transmethylation and is also the propylamino donor in polyamine biosynthesis. In bacteria there is a single isoform of AdoMet synthetase (gene metK), there are two in budding yeast (genes SAM1 and SAM2) and in mammals while in plants there is generally a multigene family. The sequence of AdoMet synthetase is highly conserved throughout isozymes and species. The active sites of both the Escherichia coli and rat liver MAT reside between two subunits, with contributions from side chains of residues from both subunits, resulting in a dimer as the minimal catalytic entity. The side chains that contribute to the ligand binding sites are conserved between the two proteins. In the structures of complexes with the E. coli enzyme, the phosphate groups have the same positions in the (PPi plus Pi) complex and the (ADP plus Pi) complex, and are located at the bottom of a deep cavity with the adenosyl group nearer the entrance []; GO: 0004478 methionine adenosyltransferase activity; PDB: 3S82_B 2OBV_A 3RV2_A 1FUG_A 1RG9_D 1XRA_A 1P7L_C 1XRB_A 1MXA_A 1MXB_A ....
Probab=29.99 E-value=32 Score=32.12 Aligned_cols=30 Identities=23% Similarity=0.314 Sum_probs=21.4
Q ss_pred cccccccCCccccchhHHHHHHHHhhcccc
Q 002661 831 YVYQRSTTAISIVAPICYAHLAASQMGQFI 860 (895)
Q Consensus 831 ~~y~~~~~~vsiPaP~~yA~~~a~r~~~~~ 860 (895)
|.|+-.-.+-=+|.|+++||++++|....-
T Consensus 12 fGYA~~ET~~~MPl~i~lAh~L~~~l~~~R 41 (120)
T PF02772_consen 12 FGYACDETPELMPLPIVLAHRLARRLAEVR 41 (120)
T ss_dssp EEEEETTSTTSS-HHHHHHHHHHHHHHHHH
T ss_pred EeeEcCCCCccCChHHHHHHHHHHHHHHHH
Confidence 344444456679999999999999886643
No 59
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=28.96 E-value=1.6e+02 Score=31.96 Aligned_cols=57 Identities=19% Similarity=0.255 Sum_probs=43.7
Q ss_pred CCCeEEEEEcCCCCCCcchHHHHHHhhcccCceeeeeec-cccChhHHHHHHHHHHhc
Q 002661 549 GPPQFILCVLPERKNSDIYGPWKKKSLSDFGIATQCISP-TKINDQYLTNVLLKINSK 605 (895)
Q Consensus 549 ~~~~lvlvIlp~~~~~~~Y~~iK~~~~~~~gV~TQci~~-~~~~~q~~~Ni~lKiN~K 605 (895)
..|.|+++...++..+..|...|...+.+.||.+..+.. ......-+...+.++|.-
T Consensus 31 ~~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D 88 (284)
T PRK14190 31 IVPGLAVILVGDDPASHSYVRGKKKAAEKVGIYSELYEFPADITEEELLALIDRLNAD 88 (284)
T ss_pred CCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 357888877766456788999999899999999988875 344555567778888854
No 60
>COG1515 Nfi Deoxyinosine 3'endonuclease (endonuclease V) [DNA replication, recombination, and repair]
Probab=28.86 E-value=2.1e+02 Score=29.54 Aligned_cols=35 Identities=20% Similarity=0.138 Sum_probs=27.9
Q ss_pred CCCChHHHHHHHHHhhcccccccCCccccchhHHHHHHHHhh
Q 002661 815 IGFSPDDLQNLIHSLSYVYQRSTTAISIVAPICYAHLAASQM 856 (895)
Q Consensus 815 ~~~~~d~lq~lt~~Lc~~y~~~~~~vsiPaP~~yA~~~a~r~ 856 (895)
...+.++.-+|+.+||- + .++|.|+..||.+|++.
T Consensus 177 ~~i~l~sal~l~~~l~~------~-~rlpeptr~ad~~a~~~ 211 (212)
T COG1515 177 HRISLPSALKLAQRLSK------G-YRLPEPTRLADILAKKR 211 (212)
T ss_pred CccCHHHHHHHHHHHcc------c-ccCCCcccHHHHhhhhc
Confidence 34678888888887763 2 67899999999998764
No 61
>cd06559 Endonuclease_V Endonuclease_V, a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases. Endonuclease_V (EndoV) is an enzyme that can initiate repair of all possible deaminated DNA bases. EndoV cleaves the DNA strand containing lesions at the second phosphodiester bond 3' to the lesion using Mg2+ as a cofactor. EndoV homologs are conserved throughout all domains of life from bacteria to humans. EndoV is encoded by the nfi gene and nfi null mutant mice have a phenotype prone to cancer. The ability of endonuclease V to recognize mismatches and abnormal replicative DNA structures suggests that the enzyme plays an important role in DNA metabolism. The details of downstream processing for the EndoV pathway remain unknown.
Probab=28.79 E-value=2.8e+02 Score=28.68 Aligned_cols=15 Identities=27% Similarity=0.401 Sum_probs=12.7
Q ss_pred CCCeEEEEEEeecCC
Q 002661 626 DTPTMILGMDVSHGS 640 (895)
Q Consensus 626 ~~~tmiiG~Dv~H~~ 640 (895)
..+.+|-|+|++|..
T Consensus 23 ~~~~~I~gvDiS~~~ 37 (208)
T cd06559 23 GEVRLVAGVDVSYKK 37 (208)
T ss_pred CCccEEEEEEeeecc
Confidence 367899999999974
No 62
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=27.20 E-value=70 Score=38.76 Aligned_cols=24 Identities=29% Similarity=0.105 Sum_probs=10.6
Q ss_pred ccCCCCCCCCCCEEEEEeEEEEEEe
Q 002661 35 IMSRRGVGNCGRRISLLTNHFKVSV 59 (895)
Q Consensus 35 ~~~RP~~Gt~G~~i~l~tN~f~i~~ 59 (895)
+|+|+..|. =.+-.+.-|+|.+.+
T Consensus 625 ~Mrr~nW~k-I~p~d~s~~cFWvkv 648 (1102)
T KOG1924|consen 625 PMRRFNWSK-IVPRDLSENCFWVKV 648 (1102)
T ss_pred ccccCCccc-cCccccCccceeeec
Confidence 344444443 233344455555543
No 63
>COG0322 UvrC Nuclease subunit of the excinuclease complex [DNA replication, recombination, and repair]
Probab=26.03 E-value=4.9e+02 Score=31.40 Aligned_cols=107 Identities=27% Similarity=0.322 Sum_probs=57.8
Q ss_pred CCeEEEEEEeecCCCCCCCCCeEEEEEeecCC-CccceeEEEEEeccCcceecccccccccCCChHHHHHHHHHH-HHHH
Q 002661 627 TPTMILGMDVSHGSPGRSDIPSVAAVVGSQSW-PLISRYRAAVRTQSSKVEMIDALYKPIANGNDDGIIRELLLD-FYRT 704 (895)
Q Consensus 627 ~~tmiiG~Dv~H~~~~~~~~pSi~avV~S~d~-~~~~~y~~~~~~q~~~~e~i~~l~~~~~~~~~~~~~~~~l~~-f~~~ 704 (895)
.|.-|-++|.||-... -.++++|...|. +.-..|. ...+.. +-.+|. .+|.|.|.. |.+-
T Consensus 378 ~p~rIE~~D~Sh~~g~----~~V~smvvf~~g~~~k~~YR-ry~i~~---~~~dDy----------a~m~evl~RR~~~~ 439 (581)
T COG0322 378 APYRIECFDISHIQGE----DTVGSMVVFEDGGPSKKDYR-RYNIKI---TGGDDY----------ASMREVLTRRYSRL 439 (581)
T ss_pred CceeEEEeecCccccc----cceeEEEEEcCCCCChhhcc-cccccC---CCCchH----------HHHHHHHHHHhhhc
Confidence 3567789999997542 256666666554 1111221 111110 112222 356666653 3222
Q ss_pred hCCCCCceEEEEeCCCCchhHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEEeecccceeec
Q 002661 705 SKQRKPKQIIIFRDGVSESQFNQVLNIELEQIIKAYQHLGEADIPKFTVIVAQKNHHTKLFQ 766 (895)
Q Consensus 705 ~~~~~P~~IIiyRDGvsegq~~~v~~~Ev~~i~~a~~~~~~~~~pkit~Ivv~Krh~~Rff~ 766 (895)
....+|+-|+| || +.||+.. .++++++++-. .. +|-+.|+-.+-|++
T Consensus 440 ~~~~~Pdli~i--DG-GkgQl~~--------a~~vl~~l~~~--~~--viglaK~~~~~~~~ 486 (581)
T COG0322 440 LKEELPDLILI--DG-GKGQLNA--------AKEVLKELGLD--IP--VIGLAKGEEELLLP 486 (581)
T ss_pred cccCCCCEEEE--eC-CHHHHHH--------HHHHHHHcCCC--cc--EEEEEecCceeEec
Confidence 23479987777 77 5677654 46677766433 22 77778886644444
No 64
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=25.92 E-value=1.9e+02 Score=31.36 Aligned_cols=56 Identities=18% Similarity=0.312 Sum_probs=42.5
Q ss_pred CCCeEEEEEcCCCCCCcchHHHHHHhhcccCceeeeeec-cccChhHHHHHHHHHHh
Q 002661 549 GPPQFILCVLPERKNSDIYGPWKKKSLSDFGIATQCISP-TKINDQYLTNVLLKINS 604 (895)
Q Consensus 549 ~~~~lvlvIlp~~~~~~~Y~~iK~~~~~~~gV~TQci~~-~~~~~q~~~Ni~lKiN~ 604 (895)
..|.|+++..-+...+..|...|...+.+.||.+-.+.. ......-+.+.+.++|.
T Consensus 30 ~~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~ 86 (284)
T PRK14170 30 KKPGLAVVLVGDNQASRTYVRNKQKRTEEAGMKSVLIELPENVTEEKLLSVVEELNE 86 (284)
T ss_pred CCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 357888887766456788999999899999999988875 34444456678888874
No 65
>KOG2488 consensus Acetyltransferase (GNAT) domain-containing protein [General function prediction only]
Probab=24.74 E-value=1.4e+02 Score=30.29 Aligned_cols=45 Identities=33% Similarity=0.571 Sum_probs=33.7
Q ss_pred EEeEEEEEEeccCCeEEEEEEEEeecCCccccCCchhhHHHHHHHHHHh
Q 002661 50 LLTNHFKVSVNTTDAVFYHYTVTISGEDKRIAKGKGIGRKVVDKLYQTY 98 (895)
Q Consensus 50 l~tN~f~i~~~~~~~~iy~YdV~i~~~~~~~v~~k~~~r~i~~~l~~~~ 98 (895)
+-==+|+..++-.+.++|.|+|.+ .+...+|++.+-++..+....
T Consensus 105 vgf~~Frf~vd~g~~vlYcyEvqv----~~~yR~kGiGk~LL~~l~~~a 149 (202)
T KOG2488|consen 105 VGFTMFRFTVDTGDPVLYCYEVQV----ASAYRGKGIGKFLLDTLEKLA 149 (202)
T ss_pred eeEEEEEEEcccCCeEEEEEEEee----hhhhhccChHHHHHHHHHHHH
Confidence 333468888776677999999998 455667889888887776543
No 66
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=24.69 E-value=2.1e+02 Score=31.13 Aligned_cols=56 Identities=14% Similarity=0.308 Sum_probs=43.7
Q ss_pred CCCeEEEEEcCCCCCCcchHHHHHHhhcccCceeeeeec-cccChhHHHHHHHHHHh
Q 002661 549 GPPQFILCVLPERKNSDIYGPWKKKSLSDFGIATQCISP-TKINDQYLTNVLLKINS 604 (895)
Q Consensus 549 ~~~~lvlvIlp~~~~~~~Y~~iK~~~~~~~gV~TQci~~-~~~~~q~~~Ni~lKiN~ 604 (895)
..|.|+++...+...+..|...|...+.+.||.+..+.. ......-+..++.++|.
T Consensus 25 ~~P~LaiI~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~t~~el~~~I~~lN~ 81 (287)
T PRK14181 25 TAPGLAVVLIGNDPASEVYVGMKVKKATDLGMVSKAHRLPSDATLSDILKLIHRLNN 81 (287)
T ss_pred CCCcEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 368888887766456889999999999999999988875 34455556688888883
No 67
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=24.47 E-value=2.5e+02 Score=30.62 Aligned_cols=55 Identities=16% Similarity=0.201 Sum_probs=43.0
Q ss_pred CCeEEEEEcCCCCCCcchHHHHHHhhcccCceeeeeec-cccChhHHHHHHHHHHh
Q 002661 550 PPQFILCVLPERKNSDIYGPWKKKSLSDFGIATQCISP-TKINDQYLTNVLLKINS 604 (895)
Q Consensus 550 ~~~lvlvIlp~~~~~~~Y~~iK~~~~~~~gV~TQci~~-~~~~~q~~~Ni~lKiN~ 604 (895)
.|.|+++...+...+..|...|...+.+.||.+-.+.. ......-+..++.++|.
T Consensus 32 ~p~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~ 87 (285)
T PRK14189 32 QPGLAVILVGDNPASQVYVRNKVKACEDNGFHSLKDRYPADLSEAELLARIDELNR 87 (285)
T ss_pred CCeEEEEEeCCCchHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcC
Confidence 57888887766567889999999899999999988775 44555566778888874
No 68
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=24.42 E-value=2.1e+02 Score=31.09 Aligned_cols=55 Identities=16% Similarity=0.224 Sum_probs=42.6
Q ss_pred CCeEEEEEcCCCCCCcchHHHHHHhhcccCceeeeeec-cccChhHHHHHHHHHHh
Q 002661 550 PPQFILCVLPERKNSDIYGPWKKKSLSDFGIATQCISP-TKINDQYLTNVLLKINS 604 (895)
Q Consensus 550 ~~~lvlvIlp~~~~~~~Y~~iK~~~~~~~gV~TQci~~-~~~~~q~~~Ni~lKiN~ 604 (895)
.|.|+++..-+...+..|...|...+.+.||.+-.+.. ......-+.+.+.++|.
T Consensus 30 ~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~t~~~l~~~I~~lN~ 85 (282)
T PRK14182 30 QTGLTVVRVGDDPASAIYVRGKRKDCEEVGITSVEHHLPATTTQAELLALIARLNA 85 (282)
T ss_pred CCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 57888887766456788999999899999999988875 44455556777788875
No 69
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=24.33 E-value=2.1e+02 Score=31.09 Aligned_cols=57 Identities=18% Similarity=0.228 Sum_probs=43.9
Q ss_pred CCCeEEEEEcCCCCCCcchHHHHHHhhcccCceeeeeec-cccChhHHHHHHHHHHhc
Q 002661 549 GPPQFILCVLPERKNSDIYGPWKKKSLSDFGIATQCISP-TKINDQYLTNVLLKINSK 605 (895)
Q Consensus 549 ~~~~lvlvIlp~~~~~~~Y~~iK~~~~~~~gV~TQci~~-~~~~~q~~~Ni~lKiN~K 605 (895)
..|.|+++...+...+..|...|...+.+.||.+..+.. ......-+.+++.++|.-
T Consensus 28 ~~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D 85 (287)
T PRK14173 28 FVPHLRVVRLGEDPASVSYVRLKDRQAKALGLRSQVEVLPESTSQEELLELIARLNAD 85 (287)
T ss_pred CCCcEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 357888887766456789999999999999999988875 344455567888888853
No 70
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=24.14 E-value=2.5e+02 Score=30.40 Aligned_cols=57 Identities=14% Similarity=0.237 Sum_probs=44.0
Q ss_pred CCCeEEEEEcCCCCCCcchHHHHHHhhcccCceeeeeec-cccChhHHHHHHHHHHhc
Q 002661 549 GPPQFILCVLPERKNSDIYGPWKKKSLSDFGIATQCISP-TKINDQYLTNVLLKINSK 605 (895)
Q Consensus 549 ~~~~lvlvIlp~~~~~~~Y~~iK~~~~~~~gV~TQci~~-~~~~~q~~~Ni~lKiN~K 605 (895)
..|.|+++...+...+..|...|...+.+.||.+..+.. ......-+...+.++|.-
T Consensus 25 ~~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D 82 (279)
T PRK14178 25 LYPRLATVIVGDDPASQMYVRMKHRACERVGIGSVGIELPGDATTRTVLERIRRLNED 82 (279)
T ss_pred CCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 468898887766456788999999999999999988875 444555567788888753
No 71
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=24.13 E-value=2.2e+02 Score=31.10 Aligned_cols=56 Identities=14% Similarity=0.285 Sum_probs=43.2
Q ss_pred CCeEEEEEcCCCCCCcchHHHHHHhhcccCceeeeeec-cccChhHHHHHHHHHHhc
Q 002661 550 PPQFILCVLPERKNSDIYGPWKKKSLSDFGIATQCISP-TKINDQYLTNVLLKINSK 605 (895)
Q Consensus 550 ~~~lvlvIlp~~~~~~~Y~~iK~~~~~~~gV~TQci~~-~~~~~q~~~Ni~lKiN~K 605 (895)
.|.|+++..-+...+..|...|...+.+.||.+-.+.. ......-+.+.+.++|.-
T Consensus 31 ~P~LaiI~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D 87 (297)
T PRK14167 31 TPGLATVLMSDDPASETYVSMKQRDCEEVGIEAIDVEIDPDAPAEELYDTIDELNAD 87 (297)
T ss_pred CceEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 57888877766456788999999999999999988775 444555567888888853
No 72
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=24.02 E-value=2.1e+02 Score=31.02 Aligned_cols=66 Identities=21% Similarity=0.294 Sum_probs=48.3
Q ss_pred HHHHHHHhCCCCCeEEEEEcCCCCCCcchHHHHHHhhcccCceeeeeec-cccChhHHHHHHHHHHh
Q 002661 539 MFELITEKLPGPPQFILCVLPERKNSDIYGPWKKKSLSDFGIATQCISP-TKINDQYLTNVLLKINS 604 (895)
Q Consensus 539 ~~~~i~~~~~~~~~lvlvIlp~~~~~~~Y~~iK~~~~~~~gV~TQci~~-~~~~~q~~~Ni~lKiN~ 604 (895)
..+.++++....|.|+++..-+.-.+..|-..|...+.+.|+.+..... ......-+.++..++|.
T Consensus 19 ~v~~~~~~~~~~P~LavilvgddpaS~~YV~~K~k~~~~iGi~~~~~~l~~~~t~~eLl~~I~~lN~ 85 (283)
T COG0190 19 KVEALKAKGGFKPGLAVILVGDDPASQVYVRSKKKAAEEIGIASELYDLPEDITEEELLALIDELNA 85 (283)
T ss_pred HHHHHHhccCCCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCeeEEEeCCCcCCHHHHHHHHHHhcC
Confidence 3344444333468888887766445789999999999999999998886 45566677788888874
No 73
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=22.44 E-value=2.4e+02 Score=30.72 Aligned_cols=55 Identities=18% Similarity=0.305 Sum_probs=42.3
Q ss_pred CCeEEEEEcCCCCCCcchHHHHHHhhcccCceeeeeec-cccChhHHHHHHHHHHh
Q 002661 550 PPQFILCVLPERKNSDIYGPWKKKSLSDFGIATQCISP-TKINDQYLTNVLLKINS 604 (895)
Q Consensus 550 ~~~lvlvIlp~~~~~~~Y~~iK~~~~~~~gV~TQci~~-~~~~~q~~~Ni~lKiN~ 604 (895)
.|.|+++...+...+..|...|...+.+.||.+-.+.. ......-+.+.+.++|.
T Consensus 32 ~p~Laii~vg~~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~ 87 (286)
T PRK14175 32 TPKLSVILVGNDGASQSYVRSKKKAAEKIGMISEIVHLEETATEEEVLNELNRLNN 87 (286)
T ss_pred CCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 57888877766456788999999999999999988875 34445556677788874
Done!