Query 002661
Match_columns 895
No_of_seqs 190 out of 1113
Neff 8.1
Searched_HMMs 29240
Date Tue Mar 26 22:14:49 2013
Command hhsearch -i /local_scratch/syshi/lefta3m2/002661.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H2_63-67//hhsearch_pdb/002661hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f3t_A Protein argonaute-2; hy 1.0 1 1 1448.0 77.9 806 29-895 21-861 (861)
2 4f1n_A Kpago; argonaute, RNAI, 1.0 1 1 1358.8 63.1 840 28-895 12-1046(1046)
3 1yvu_A Hypothetical protein AQ 1.0 1 1 810.5 39.6 653 51-861 6-694 (706)
4 2yhb_A QDE-2, post-transcripti 1.0 1 1 773.3 22.2 403 471-895 2-437 (437)
5 1u04_A Argonaute, hypothetical 1.0 1 1 756.6 39.7 667 47-864 3-760 (771)
6 3ho1_A Argonaute; argonaute, p 1.0 1 1 639.8 50.6 640 46-858 5-668 (685)
7 2yha_A Post-transcriptional ge 1.0 1 1 636.1 23.9 359 471-895 2-388 (388)
8 2w42_A PIWI, putative uncharac 1.0 1 1 431.0 13.7 362 448-864 5-409 (427)
9 1vyn_A Argonaute2; nucleic aci 1.0 1 1 203.5 8.0 131 264-407 2-143 (143)
10 1r6z_P Chimera of maltose-bind 1.0 1 1 195.5 8.5 124 257-393 375-509 (509)
No 1
>4f3t_A Protein argonaute-2; hydrolase/gene regulation, RNAI, slicer, hydrolase-RNA; 2.25A {Homo sapiens} PDB: 4ei1_A 4ei3_A* 1r4k_A 1si2_A 1si3_A
Probab=1.00 E-value=1 Score=1447.97 Aligned_cols=806 Identities=34% Similarity=0.581 Sum_probs=696.8
Q ss_pred CCCCCCCCCCCCCCCCCCEEEEEEEEEEEEECCCCEEEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHH-HHHCCCCE
Q ss_conf 89843456889999889878999578897843678079998888616886225771235999999999865-54149765
Q 002661 29 DLPRHSIMSRRGVGNCGRRISLLTNHFKVSVNTTDAVFYHYTVTISGEDKRIAKGKGIGRKVVDKLYQTYS-AELAGKRF 107 (895)
Q Consensus 29 ~~~~~~~~~Rp~~Gt~G~~i~l~tN~f~i~~~~~~~~iy~Y~V~i~~~~~~~~~~k~~~r~i~~~l~~~~~-~~f~~~~~ 107 (895)
......+++|||+|+.|++|.|+||||++.++ ++.+|||||+|.| +.++++++|++++++++++. ..|++..+
T Consensus 21 ~~~~~~~p~RPg~Gt~G~~i~l~aN~F~v~~~--~~~ly~Y~V~i~p----~~~~~~~~r~i~~~l~~~~~~~~~~~~~~ 94 (861)
T 4f3t_A 21 QGYAFKPPPRPDFGTSGRTIKLQANFFEMDIP--KIDIYHYELDIKP----EKCPRRVNREIVEHMVQHFKTQIFGDRKP 94 (861)
T ss_dssp ----CCCCBCCCCCCCSEEEEEEESEEEEECC--SCEEEEEEEEEES----CSCCHHHHHHHHHHHHHHSCCCCCTTCCC
T ss_pred CCCCCCCCCCCCCCCCCCEEEEEEEEEEEECC--CCCEEEEEEEECC----CCCCHHHHHHHHHHHHHHHHHHHHCCCEE
T ss_conf 45456679899789888478999556998778--8862650378478----76767799999999998755665068607
Q ss_pred EEECCCEEEECCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHCC
Q ss_conf 89287505633778999507999852100001599999999999999888787888529999963222176879999649
Q 002661 108 AYDGEKSLYTVGPLPQNKFEFTVVLEESRAKQQNGSPRGRDSPIGPGKRSKHSFQSKTFMVEISFATKIPLRSIALALKG 187 (895)
Q Consensus 108 vyDG~~~lyS~~~Lp~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~~~~~i~l~~l~~~l~g 187 (895)
||||+++|||+.+||.+..+.++..... + +.+.++|+|+|++++++++.+|..|++|
T Consensus 95 afDG~~~l~s~~~L~~~~~~~~~~v~~~----------------~-------~~~~~~~~V~I~~~~~i~l~~L~~~l~g 151 (861)
T 4f3t_A 95 VFDGRKNLYTAMPLPIGRDKVELEVTLP----------------G-------EGKDRIFKVSIKWVSCVSLQALHDALSG 151 (861)
T ss_dssp EECSSSEEEESSCCSCSSCEEEEECCC------------------------------CEEEEEEEEEEEEHHHHHHHHHT
T ss_pred EECCCCEEEECCCCCCCCCCEEEEEECC----------------C-------CCCCCEEEEEEEEEEECCHHHHHHHHCC
T ss_conf 8758631788876787786369998637----------------8-------8987279999999024388999999649
Q ss_pred CCCCCHHHHHHHHHHHHHCHHHHCCCEECCCCCCCCCCCCCCCCCCCEEEEECCEEEEEECCCCEEEEEECCEEEEECCC
Q ss_conf 99987268999999999610010274110432226899781026997697414437998518904564101033462465
Q 002661 188 NEVDNTQDALRVLDIVLRQQAANWGCLLVRQSFFHDDSRNLVDVGGGVSGIRGFHSSFRPTQGGLSLNMDVSTTMILKPG 267 (895)
Q Consensus 188 ~~~~~~~~~lq~ldiil~~~~~~~~~~~~g~~fF~~~~~~~~~l~~G~e~~~G~~~Sir~~~~~l~LniD~~~~~F~~~~ 267 (895)
.....+++++|+||+|+|+.++ .++..+||+||.+..+...++++|+|+|+||++|||+++++++||+|+++++|++++
T Consensus 152 ~~~~~~~~~iq~Lniilr~~~~-~~~~~vGR~Ff~~~~~~~~~lg~Gle~w~G~~~Svr~~~~~l~LnvDvs~~~F~~~~ 230 (861)
T 4f3t_A 152 RLPSVPFETIQALDVVMRHLPS-MRYTPVGRSFFTASEGCSNPLGGGREVWFGFHQSVRPSLWKMMLNIDVSATAFYKAQ 230 (861)
T ss_dssp CSSSCCHHHHHHHHHHHHHHHH-HHSEEETTEEECCC---CCEEETTEEEEEEEEEEEEECSSSEEEEEEEEEEEEECCE
T ss_pred CCCCCCHHHHHHHHHHHHHHCC-CCCCCCCCCCCCCCCCCEECCCCCEEEEECEEEEEEECCCCCEEEECCCCEEEEECC
T ss_conf 9878828999999999976221-246426877558987750116898799845067898517852785414310276077
Q ss_pred CHHHHHHHHCCCCCC-------CCCCHHHHHHHCCCCEEEECC---CCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 088999972488997-------600189999650551999301---7935999406888888662016457888988897
Q 002661 268 PVIDFLIANQNVREP-------RFIDWTKAKKMLRNLRVKPRH---RNMEFKIVGLSEKPCNQQFFPMKVKSTEGTNEGE 337 (895)
Q Consensus 268 ~l~d~i~~~~~~~~~-------~~~~~~~i~~~Lkgl~V~~~~---~~r~~~I~gi~~~~a~~~~F~~~~~~~~g~~~~~ 337 (895)
+|+|+|.+..+.++. ...++.+++++|+|++|.++| ++|+|+|.||++.++.+.+|.++..+ | +
T Consensus 231 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~k~LkGl~V~~t~~~~~~r~yrI~~i~~~pa~~~~F~~~~~~--g----~ 304 (861)
T 4f3t_A 231 PVIEFVCEVLDFKSIEEQQKPLTDSQRVKFTKEIKGLKVEITHCGQMKRKYRVCNVTRRPASHQTFPLQQES--G----Q 304 (861)
T ss_dssp EHHHHHHHHHTCSSCC---CCCCHHHHHHHHHHHTTCEEEESCC---CCEEEEEEEEEEETTTCEEEEECSS--S----C
T ss_pred CHHHHHHHHHCCCCHHHHCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCEEEEEECCCCCCCCCEEEEECCC--C----C
T ss_conf 099999998634550220356577899999998579389983037788659995378899877678765278--9----8
Q ss_pred CEEEEHHHHHHHHCCCCCCCCCCCCEEECCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 41653989998834941134899757965899986211345327636641023499999999999950796999999999
Q 002661 338 TLEITVYDYFTQHCRIELTYSAYLPCLDVGKPKRPNYLPLELCSLVSLQRYTKALSSMQRASLVEKSRQKPQDRMRTLTD 417 (895)
Q Consensus 338 g~~iSv~dYf~~~Y~i~L~~~p~lP~i~vg~~~~~~~lP~Elc~i~~~Q~~~~~l~~~q~~~lik~~~~~P~~R~~~i~~ 417 (895)
+.++||+|||+++|||+|+| |+||||++|+.++++|||||||.|+|||++.++|++.|+++||++++..|.+|++.|.+
T Consensus 305 ~~~iSV~dYFk~kYni~L~~-p~lPll~~g~~~~~~ylP~Elc~i~~gQ~~~~~Lt~~q~s~mik~~~~~P~~R~~~I~~ 383 (861)
T 4f3t_A 305 TVECTVAQYFKDRHKLVLRY-PHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIRATARSAPDRQEEISK 383 (861)
T ss_dssp EEEEEHHHHHHHHHCCCCSC-TTSEEEEESCTTTTEEEEGGGEEECTTCBCCSCCCHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred CEEEEHHHHHHHHCCCCCCC-CCCCEEEECCCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 41688899998753952479-99763883488887525656689407844556689899999999875497999999999
Q ss_pred HHHHCCCCCCCCCCEEEEEECCCEEEEEEEEECCCCEECCCCC--CCCCCCCCCCCCCCEEECCCCCCEEEEEEECCC--
Q ss_conf 9872267885334202179726302765587159814309842--358989743347840211334454899995897--
Q 002661 418 ALRSYSYDEDPVLAACGISIGKQLTQVDGRILEIPKLKVGKSE--DCIPRNGRWNFNNKRFLEATRIDRWIVVNFSAR-- 493 (895)
Q Consensus 418 ~~~~~~~~~~~~l~~fGl~i~~~~~~v~arvL~~P~I~yg~~~--~~~~~~g~W~~~~~~f~~p~~l~~W~ii~~~~~-- 493 (895)
+++.++++.+++|++|||+|+++|++|+||||+||+|.|++++ ...|.+|+|++++++|++|+++++|++++++..
T Consensus 384 ~~~~l~~~~~~~l~~fGi~i~~~~~~v~gRvL~~P~I~y~~~~~~~~~~~~g~W~~~~~~f~~~~~l~~W~vv~~~~~~~ 463 (861)
T 4f3t_A 384 LMRSASFNTDPYVREFGIMVKDEMTDVTGRVLQPPSILYGGRNKAIATPVQGVWDMRNKQFHTGIEIKVWAIACFAPQRQ 463 (861)
T ss_dssp HHHHHCGGGCHHHHHTTCEECSSCEEEEEEECCCCCEECCSSSCCEECCBTTBCCCTTCCCTBCCCBCCEEEEECSCTTT
T ss_pred HHHHHCCCCCHHHHHCCCEEECCEEEEEEEEECCCEEEECCCCCCCCCCCCCCEECCCCEECCCCCCCEEEEEEECCCCC
T ss_conf 99871689756899779788387568977982586488568764333788785135698870275444059998457544
Q ss_pred C---CHHHHHHHHHHHHHCCCEECCC-CCEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHH
Q ss_conf 6---4899999999984203702048-81344235311379914689999999997499998399999179999865588
Q 002661 494 C---DTSHISRELINCGRNKGIHIER-PFTLIEEDQQTRRGNPVVRVERMFELITEKLPGPPQFILCVLPERKNSDIYGP 569 (895)
Q Consensus 494 ~---~~~~f~~~L~~~~~~~G~~i~~-p~~i~~~~~~~~~~~~~~~le~~~~~~~~~~~~~~~lvlvIlp~~~~~~~Y~~ 569 (895)
. .++.|++.|.+.|+.+||.+.. |....... ..+.++.+++.+++.. ..+|||+||+|+ + .+.|+.
T Consensus 464 ~~~~~~~~f~~~L~~~~~~~G~~i~~~p~~~~~~~-------~~~~~~~~~~~l~~~~-~~~qlvl~Ilp~-~-~~~Y~~ 533 (861)
T 4f3t_A 464 CTEVHLKSFTEQLRKISRDAGMPIQGQPCFCKYAQ-------GADSVEPMFRHLKNTY-AGLQLVVVILPG-K-TPVYAE 533 (861)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTCCBCSCCSEEEECC-------SSSSHHHHHHHHHHHS-TTCCEEEEEESS-S-CTHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECC-------CHHHHHHHHHHHHHHC-CCCCEEEEEECC-C-CCHHHH
T ss_conf 45899999999999998507865479973777258-------4578999999998526-898389999589-8-428999
Q ss_pred HHHHHHCCCCCEEEEEECC---CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCC
Q ss_conf 9998621569411454036---5675689999999885059843223432346678745899299999831399999998
Q 002661 570 WKKKSLSDFGIATQCISPT---KINDQYLTNVLLKINSKLGGINSLLALEQSSLIPLIKDTPTMILGMDVSHGSPGRSDI 646 (895)
Q Consensus 570 iK~~~~~~~gV~TQci~~~---k~~~q~~~Ni~lKiN~KlGG~n~~~~~~~~~~~p~~~~~~tmiiG~dv~h~~~~~~~~ 646 (895)
||+++|++.||+||||+.+ +.++|++.||++|||+||||+||.+.+. ..|.+...+|||||+||+||+++....
T Consensus 534 IK~~~~~~~gI~TQcv~~~~~~k~~~q~~~ni~lKiN~KlGG~n~~l~~~---~~~~~~~~~tmiiG~DV~H~~~~~~~~ 610 (861)
T 4f3t_A 534 VKRVGDTVLGMATQCVQMKNVQRTTPQTLSNLCLKINVKLGGVNNILLPQ---GRPPVFQQPVIFLGADVTHPPAGDGKK 610 (861)
T ss_dssp HHHHHHHTSCCEEEEEETHHHHSCCHHHHHHHHHHHHHHTTCBCCEECST---TSCGGGGSCEEEEEEEEECCC----CC
T ss_pred HHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEECCCC---CCCCCCCCCEEEEEEEECCCCCCCCCC
T ss_conf 99974306784228997212255567899999999988619833044665---465346896589987721468887788
Q ss_pred CEEEEEEEECCCCCCCEEEEEEEECCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHH
Q ss_conf 83889995047886431578999606862000223455568991899999999999871799994699982888901489
Q 002661 647 PSVAAVVGSQSWPLISRYRAAVRTQSSKVEMIDALYKPIANGNDDGIIRELLLDFYRTSKQRKPKQIIIFRDGVSESQFN 726 (895)
Q Consensus 647 pSi~avVaS~d~~~~~~y~~~~~~q~~~~e~i~~~~~~~~~~~~~~~~~~~l~~f~~~~~~~~P~~IiiyRDGvsegq~~ 726 (895)
||++|+|||+|+ ..++|.+.+++|.+++|+|+++ ++|++++|..|++.+ +.+|++|||||||||||||+
T Consensus 611 pSiaa~vaS~d~-~~~~y~~~~~~Q~~~~E~i~~l---------~~~~~~~L~~~~~~~-~~~P~~IiiyRDGVsegq~~ 679 (861)
T 4f3t_A 611 PSIAAVVGSMDA-HPNRYCATVRVQQHRQEIIQDL---------AAMVRELLIQFYKST-RFKPTRIIFYRDGVSEGQFQ 679 (861)
T ss_dssp CEEEEEEEECSS-SSCCEEEEEEEESTTCCSCTTH---------HHHHHHHHHHHHHHH-SCCCSEEEEEEESCCGGGHH
T ss_pred CEEEEEEEECCC-CCCEEEEEEEECCCCCCHHHHH---------HHHHHHHHHHHHHHH-CCCCCEEEEEECCCCHHHHH
T ss_conf 659999998479-8565878999758995589989---------999999999999982-89984599992687768899
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCEEECCCC------CCCCCCEEEEECCCCCCCCCCEEEEECCCCC
Q ss_conf 9999999999999998379999719999995313200103899------9999990065054446872227962025864
Q 002661 727 QVLNIELEQIIKAYQHLGEADIPKFTVIVAQKNHHTKLFQASG------PENVPPGTVVDTRIVHPRNYDFYMCAHAGMI 800 (895)
Q Consensus 727 ~v~~~Ei~~i~~a~~~~~~~~~p~it~Ivv~Krh~~Rff~~~~------~~N~~pGTvVD~~it~p~~~dFyL~sh~~~q 800 (895)
+|+++|+++|++||.++..+|+|+||||||+||||+|||+.+. .+|++||||||++||+|.+|||||+||.++|
T Consensus 680 ~v~~~Ev~~i~~a~~~~~~~~~P~it~Ivv~Krh~tRff~~~~~~~~~~~~N~~pGTvVD~~it~p~~~dFyL~Sh~~~q 759 (861)
T 4f3t_A 680 QVLHHELLAIREACIKLEKDYQPGITFIVVQKRHHTRLFCTDKNERVGKSGNIPAGTTVDTKITHPTEFDFYLCSHAGIQ 759 (861)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCCCEEEEEEEECCSCCCEEESSGGGCBTTTTBCCTTEEECSSSSCSSBCEEEEECSCCCS
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCEEEECCCCCCCCCCCCCCCCEECCCCCCCCCCCEEEEEEEECCC
T ss_conf 99999999999999985447798579999972566356225875333446898984011575025887779998885141
Q ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCC-CCCCCCCCCCCCCCC---
Q ss_conf 3336873699936999995799999999620124336874345515789999986201231-347899766678999---
Q 002661 801 GTSRPAHYHVLLDEIGFSPDDLQNLIHSLSYVYQRSTTAISIVAPICYAHLAASQMGQFIK-FEDSSDTSITSAGSV--- 876 (895)
Q Consensus 801 GTarPt~Y~Vl~d~~~~~~d~lq~lt~~Lc~~y~~~~~~vsiP~P~~yA~~~a~r~~~~l~-~~~~~~~~~~~~~~~--- 876 (895)
||+|||||+||+||+++++|+||+|||+|||+|+|||++||+||||||||++|+|||+|+. .+.+++++|.++|.+
T Consensus 760 GTarPthY~Vl~d~~~~~~d~lq~lty~Lc~~y~~~t~~vsvpaP~yYA~~~a~R~r~~l~~~~~~~~~~~~~~~~~~~~ 839 (861)
T 4f3t_A 760 GTSRPSHYHVLWDDNRFSSDELQILTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEHDSAEGSHTSGQSNGR 839 (861)
T ss_dssp SCCCCEEEEEEEETTCCCHHHHHHHHHHHTTCCTTSSBCCSSCHHHHHHHHHHHHHHHHHCCC----------------C
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
T ss_conf 36667668998379999999999999998655210478887762889999999999975110135677665446887665
Q ss_pred CCC---CCCCCCCCCCCCEEEC
Q ss_conf 999---8822221498980329
Q 002661 877 PVP---ELPRLHKNVESSMFFC 895 (895)
Q Consensus 877 ~~~---~~~~~~~~~~~~m~~~ 895 (895)
... ...++|++++++|||+
T Consensus 840 ~~~~~~~~~~vh~~~~~~M~y~ 861 (861)
T 4f3t_A 840 DHQALAKAVQVHQDTLRTMYFA 861 (861)
T ss_dssp CSTTHHHHTCCCHHHHTTTTTC
T ss_pred CHHHHHHHHHHHHHHCCCCEEC
T ss_conf 5355544534316551583039
No 2
>4f1n_A Kpago; argonaute, RNAI, RNAse H, RNA binding protein-RNA complex; 3.19A {Vanderwaltozyma polyspora}
Probab=1.00 E-value=1 Score=1358.77 Aligned_cols=840 Identities=23% Similarity=0.342 Sum_probs=666.0
Q ss_pred CCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEECCCC-------------------EEEEEEEEEEECCCCC---------
Q ss_conf 689843456889999889878999578897843678-------------------0799988886168862---------
Q 002661 28 VDLPRHSIMSRRGVGNCGRRISLLTNHFKVSVNTTD-------------------AVFYHYTVTISGEDKR--------- 79 (895)
Q Consensus 28 ~~~~~~~~~~Rp~~Gt~G~~i~l~tN~f~i~~~~~~-------------------~~iy~Y~V~i~~~~~~--------- 79 (895)
+-...+.++.||||||.|++|.|+||||.+.+++.. ..||+|+|+|.++..+
T Consensus 12 ~~~~~~~~p~Rp~yGt~G~~v~l~aN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~i~~~~~~~~~~~~~~~~~ 91 (1046)
T 4f1n_A 12 DTHAIYKVENRHDYGTKGTKVDILTNHILLAVGNDVPTEKIDKELVPKLDGWWKTAFIFTYHIDFKPQQKGPPRRGKPVP 91 (1046)
T ss_dssp CCCCCCCCCBCCCCCCCSEEEEEEESEEEEECCTTSCTTTSCTTTSCCCCSTTTSCEEEEEEEEEC--------------
T ss_pred CCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCC
T ss_conf 76113547899988989967899963799854777543322111233444333541589988997564566544456676
Q ss_pred -CCCCCHHHHHHHHHHHHHH--HHHHCCCCEEEECCCEEEECCCCC---CCCEEEEEEECCCCCCCCCCCCCCCCCC---
Q ss_conf -2577123599999999986--554149765892875056337789---9950799985210000159999999999---
Q 002661 80 -IAKGKGIGRKVVDKLYQTY--SAELAGKRFAYDGEKSLYTVGPLP---QNKFEFTVVLEESRAKQQNGSPRGRDSP--- 150 (895)
Q Consensus 80 -~~~~k~~~r~i~~~l~~~~--~~~f~~~~~vyDG~~~lyS~~~Lp---~~~~~~~v~~~~~~~~~~~~~~~~~~~~--- 150 (895)
...+++..++|+..++++. ... .++.+||||+++|||+++|| .....|.|..... ++.. .+.|.|
T Consensus 92 ~~~~~~~k~~~ii~~ll~e~~~~~~-~~~~ia~d~~~~L~s~~~L~~~~l~~~~~~v~~~~~---~~~~--~~~~~~~~~ 165 (1046)
T 4f1n_A 92 PQELSKPKKYELIEALLDEDEILYK-YRDRIAFNGEDTIYSHVPLEEFTLFDGCWEVSNKQK---KKVV--PGMGAPSNK 165 (1046)
T ss_dssp ---CCHHHHHHHHHHHHHSCTTTGG-GTTSEEECSSSEEEESSCGGGSTTCTTCCC------------------------
T ss_pred CCCCCHHHHHHHHHHHHHHCCHHHH-CCCCEEECCCCCEEECCCCCCCCCCCCCEEEECCCC---CCCC--CCCCCCCCC
T ss_conf 5322123799999999972613564-288604647221687876776535777669865533---4466--776654433
Q ss_pred CCCCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHCCCCCCCH-----HHHHHHHHHHHHCHHHHC-CC-EEC-CCCCCC
Q ss_conf 9999888787888529999963222176879999649999872-----689999999996100102-74-110-432226
Q 002661 151 IGPGKRSKHSFQSKTFMVEISFATKIPLRSIALALKGNEVDNT-----QDALRVLDIVLRQQAANW-GC-LLV-RQSFFH 222 (895)
Q Consensus 151 ~~~~~~~~~~~~~~~~~v~I~~~~~i~l~~l~~~l~g~~~~~~-----~~~lq~ldiil~~~~~~~-~~-~~~-g~~fF~ 222 (895)
.........+.+.++|+|+|+++++|++.+|.+|+.|...... .+++++|+++|++.+... +. ..+ +++||.
T Consensus 166 ~~~~~~~~~~~~~~~~~V~i~~~~~i~l~dL~~~l~~~~~~~~~~~~~~~~i~aL~~il~~~~~~~~~~i~~vg~nkFF~ 245 (1046)
T 4f1n_A 166 ASLQKKIDPELEEMVSQITLKFSGKVGLKDIYNDTTTQDTEVQESRMSAIDKTCLLSLLGAKFMSTDDLIFQVQGNKFFI 245 (1046)
T ss_dssp ------------CGGGGEEEEEEEEEEGGGGGSCSSCCCTTHHHHHHTCHHHHHHHHHHHHHHHCSSSCEEEETTTEEEE
T ss_pred CCCCCCCCCCCCCCEEEEEEEEEEECCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCC
T ss_conf 22234555556684599999871051799999997289855443334167899999997556553589648757843046
Q ss_pred CC-CCCCCCCCCCEEEEECCEEEEEECCCCEEEEEECCEEEEECC-----------------CCHHHHHHHHCCC-----
Q ss_conf 89-978102699769741443799851890456410103346246-----------------5088999972488-----
Q 002661 223 DD-SRNLVDVGGGVSGIRGFHSSFRPTQGGLSLNMDVSTTMILKP-----------------GPVIDFLIANQNV----- 279 (895)
Q Consensus 223 ~~-~~~~~~l~~G~e~~~G~~~Sir~~~~~l~LniD~~~~~F~~~-----------------~~l~d~i~~~~~~----- 279 (895)
.. .....+|++|+|+|+|||+|||++.++++||+|+++++|+++ ++|+|+|.++.+.
T Consensus 246 ~~~~~~~~~Lg~Gle~wrGffqSvRpa~~rLlLNvdvs~~aF~k~~~~~~~~~~~~~~~~~p~~lid~l~~~~~~~~~~~ 325 (1046)
T 4f1n_A 246 FNNFAKAIPFQIGGYLLQGFTVSLTHVYGGVALNTVSVPAPFIKHTKYLPGDPRFKNNEKEQFTLMDWIIECYHQSKAIR 325 (1046)
T ss_dssp CSTTCCEEECSSSEEEEEEEEEEEEEETTEEEEEEEEEEEEEECCSSSCTTSHHHHHCTTCCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCEEEEEEEEEEEEECCCCEEEEEECCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCC
T ss_conf 79877510378817999767666785189408997255111784666676531000135688609999999863333322
Q ss_pred ---------CCCCCCCH-------HHHHHHCCCCEEEECCCC---------------CEEEEEECCCCCCCCCCCCCCCC
Q ss_conf ---------99760018-------999965055199930179---------------35999406888888662016457
Q 002661 280 ---------REPRFIDW-------TKAKKMLRNLRVKPRHRN---------------MEFKIVGLSEKPCNQQFFPMKVK 328 (895)
Q Consensus 280 ---------~~~~~~~~-------~~i~~~Lkgl~V~~~~~~---------------r~~~I~gi~~~~a~~~~F~~~~~ 328 (895)
+.+...++ .+++++|+||+|.++|.+ +.++|.||+..+|.+.+|..++.
T Consensus 326 ~~~~~~~~~~~~~~~d~~~f~~~~~kl~k~LKgLkV~vth~~~~~~~~g~~~~~~~~r~k~I~GLs~~~a~~~~F~~~~~ 405 (1046)
T 4f1n_A 326 DIRYNPKTAPPPSVKDLNYFVEKNTDISALLKGLKVYRPYINYSINKDGTPKPPRKRSSKGIVGFTRESAVSMRFNVLES 405 (1046)
T ss_dssp SSSCTTTTSCCCCSSHHHHHHHHCHHHHHHHTTCEECCTTCC--------------CCCEECCEECSSCSSSCC------
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCEEEECCCC
T ss_conf 22223223578755665445678899999848978999866754455665244346664698634689977319961687
Q ss_pred C--CCC--CCCCCCEEEEHHHHHHHHCCCCCCCCCCCCEEECCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 8--889--888974165398999883494113489975796589998621134532763664102349999999999995
Q 002661 329 S--TEG--TNEGETLEITVYDYFTQHCRIELTYSAYLPCLDVGKPKRPNYLPLELCSLVSLQRYTKALSSMQRASLVEKS 404 (895)
Q Consensus 329 ~--~~g--~~~~~g~~iSv~dYf~~~Y~i~L~~~p~lP~i~vg~~~~~~~lP~Elc~i~~~Q~~~~~l~~~q~~~lik~~ 404 (895)
+ .+| ....+++++||+|||+++||++|+| |+||||++|++ .+|||||||.|++||+|+++|++ +++||++|
T Consensus 406 ~~~~~~~~~~g~~~~~iTVadYFk~kYni~Lky-P~LPcV~VG~~--~~ylPmElC~I~pGQr~~kKL~~--ts~MIKfA 480 (1046)
T 4f1n_A 406 SLKKNSAPKPNEKPININTIDYFKRKYDITLKY-PDMKLVNLGGK--NDVVPPECLTIVPGQKLKGQIFD--TKTYIDFS 480 (1046)
T ss_dssp -----------------CHHHHHHHHSCCCCSC-TTSCCEECSTT--TCEECGGGCCBCTTCBCCSCCCC--HHHHHHHH
T ss_pred CCCCCCCCCCCCCCEEEEHHHHHHHHHCCCCCC-CCCCEEEECCC--CCCCCCCEEEECCCCCCCCCCCC--HHHHHHHH
T ss_conf 544456666776752788999999873940479-99877997897--74213104796689624512351--78999987
Q ss_pred HCCHHHHHHHHHHHHHH-----CCCCCCCCCCEEEEEECCCEEEEEEEEECCCCEECCCCCC----------CCCCCCCC
Q ss_conf 07969999999999872-----2678853342021797263027655871598143098423----------58989743
Q 002661 405 RQKPQDRMRTLTDALRS-----YSYDEDPVLAACGISIGKQLTQVDGRILEIPKLKVGKSED----------CIPRNGRW 469 (895)
Q Consensus 405 ~~~P~~R~~~i~~~~~~-----~~~~~~~~l~~fGl~i~~~~~~v~arvL~~P~I~yg~~~~----------~~~~~g~W 469 (895)
+.+|.+|++.|.+.... +..+.+++|++|| +|+.+|++|+||||+||.|+|+++.. ..+.+|.|
T Consensus 481 a~rP~eR~~~I~~~~~~~~~~~l~~~~~~~l~~FG-~I~~~m~~V~gRVLppP~L~Yg~~~~~~~~~p~~~~~~p~~G~W 559 (1046)
T 4f1n_A 481 AIRPTEKFDLISRLSMPAIKRGLTDSEKEESSAPH-NSAYQFMRVPSRILDAPVVQFKESTFEYKDKSYGTKHEESKGNW 559 (1046)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHTSCCC---------CCSSSCCEEEEEECCCCCEECSSCEECCCCCCSSSSGGGGTTBC
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCC-CCCCCEEEEEEEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 56949999999999887541024666557678628-75685036778874897576168754555565434457667852
Q ss_pred CCCCCEEECCCC-CCEEEEEEEC-CC--------CCHHHHHHHHHHHHHCCCEECCCCC-EEEECC---C---------C
Q ss_conf 347840211334-4548999958-97--------6489999999998420370204881-344235---3---------1
Q 002661 470 NFNNKRFLEATR-IDRWIVVNFS-AR--------CDTSHISRELINCGRNKGIHIERPF-TLIEED---Q---------Q 526 (895)
Q Consensus 470 ~~~~~~f~~p~~-l~~W~ii~~~-~~--------~~~~~f~~~L~~~~~~~G~~i~~p~-~i~~~~---~---------~ 526 (895)
||++++|++|+. +.+|.++.+. .. .++..|++.|.+.|+..||.+..|. .+.... + .
T Consensus 560 nm~~~kf~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~Gm~i~~~~~p~~~~~~~~~~~~~~~~~~~ 639 (1046)
T 4f1n_A 560 NMKGHQFISTPAKQVNLRAIFINNANTAPPASMESELDISMDKFASDVKQLGVDFNVSGKPILINQFGPPIKKFQGGGRG 639 (1046)
T ss_dssp CCTTCCCSBCCSSCEEEEEEEEECSSSCCCGGGHHHHHHHHHHHHHHHHTTTCCEECCSCCEEEESCCSCBC--------
T ss_pred CCCCCEEECCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 68888771378666407999972787666542389999999999999986698547877874121345543111233433
Q ss_pred CCCC------------------CCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 1379------------------9146899999999974999983999991799998655889998621569411454036
Q 002661 527 TRRG------------------NPVVRVERMFELITEKLPGPPQFILCVLPERKNSDIYGPWKKKSLSDFGIATQCISPT 588 (895)
Q Consensus 527 ~~~~------------------~~~~~le~~~~~~~~~~~~~~~lvlvIlp~~~~~~~Y~~iK~~~~~~~gV~TQci~~~ 588 (895)
.+.. ......+..+..+.++. ..++|||||+|++++++.|+.||+++|+++||+||||+.+
T Consensus 640 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~lvl~Ilp~~~~~~~Y~~IK~~~d~~~gV~TQcv~~~ 718 (1046)
T 4f1n_A 640 GRGGRGSRGGRGGRGAPSGPPTFETSPGEISLLNLLENI-PSNTYILYVLRRGNDSAVYDRLKYITDLKFGALNSCVVWD 718 (1046)
T ss_dssp --------------------CCCBCCTTHHHHHHHHHTC-CTTEEEEEEESSSCCHHHHHHHHHHHTTTTCCCEEEEEHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHC-CCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEEHH
T ss_conf 323333333333333444432111231799999999745-8997899996688871689999997613578144898423
Q ss_pred ---CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC----CCCCEEEEEEEEECCCCCCCCCCEEEEEEEECCCCCC
Q ss_conf ---567568999999988505984322343234667874----5899299999831399999998838899950478864
Q 002661 589 ---KINDQYLTNVLLKINSKLGGINSLLALEQSSLIPLI----KDTPTMILGMDVSHGSPGRSDIPSVAAVVGSQSWPLI 661 (895)
Q Consensus 589 ---k~~~q~~~Ni~lKiN~KlGG~n~~~~~~~~~~~p~~----~~~~tmiiG~dv~h~~~~~~~~pSi~avVaS~d~~~~ 661 (895)
+.+.|+++||+||||+||||+||.++... ++++ +..+|||||+||+|++.+. .+||+|+|||+|. .+
T Consensus 719 t~~k~~~q~~~NI~lKiN~KLGG~n~~l~~~~---~~~l~~~~~~~ptMiiG~DVtH~p~~~--~~SiaavVaS~d~-~~ 792 (1046)
T 4f1n_A 719 NFKKNSIQYNSNVVMKMNLKLLGSNHSLSIEN---NKLLIDKESNLPILVLGSDVTHYPEKD--QNSIASLVGSYDD-KF 792 (1046)
T ss_dssp HHTTCCHHHHHHHHHHHHHHTTCBCCEECTTG---GGGGEETTTTEECEEEEEEEECCSSTT--CEEEEEEEECCSS-SC
T ss_pred HHCCCCHHHHHHHHHHHHHHCCCEEEECCCCC---CCCCCCCCCCCCEEEEEEEEECCCCCC--CCEEEEEEEEECC-CC
T ss_conf 51354278999999999986098511436654---432344456773499853111179899--8726699999879-85
Q ss_pred CEEEEEEEECCC-CCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 315789996068-6200022345556899189999999999987179999469998288890148999999999999999
Q 002661 662 SRYRAAVRTQSS-KVEMIDALYKPIANGNDDGIIRELLLDFYRTSKQRKPKQIIIFRDGVSESQFNQVLNIELEQIIKAY 740 (895)
Q Consensus 662 ~~y~~~~~~q~~-~~e~i~~~~~~~~~~~~~~~~~~~l~~f~~~~~~~~P~~IiiyRDGvsegq~~~v~~~Ei~~i~~a~ 740 (895)
++|.+.+++|.+ ++|+|++|. +|+.++|..|++.+++.+|++|||||||||||||++|+++|+++|++||
T Consensus 793 t~y~s~~~~Q~~~~~Eii~~L~---------~~~~~~L~~y~~~n~~~lP~~IIiYRDGVSEGQf~~Vl~~Ev~~Ik~a~ 863 (1046)
T 4f1n_A 793 TQFPGDYMLQDGPGEEIITNVG---------SLMLNRLKIYQKHNNGKLPTKIMYFRDGVSVDQFSQVVKIEVKSIKESV 863 (1046)
T ss_dssp CCCCEEEEEEEEETCCSCTTGG---------GGHHHHHHHHHHTTTTCCCSSEEEEEESCCGGGHHHHHHTHHHHHHHHH
T ss_pred CEEEEEEEEECCCCCCHHHHHH---------HHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 8583599984588724898899---------9999999999986379998579998068765778999999999999999
Q ss_pred HHHC------CCCCCCEEEEEEEECCCCEEECCCC--------------CCCCCCEEEEECCCCCCCCCCEEEEECCCCC
Q ss_conf 9837------9999719999995313200103899--------------9999990065054446872227962025864
Q 002661 741 QHLG------EADIPKFTVIVAQKNHHTKLFQASG--------------PENVPPGTVVDTRIVHPRNYDFYMCAHAGMI 800 (895)
Q Consensus 741 ~~~~------~~~~p~it~Ivv~Krh~~Rff~~~~--------------~~N~~pGTvVD~~it~p~~~dFyL~sh~~~q 800 (895)
.++. .+|+|+||||||+||||+|||+.+. .+|++||||||++||+|..|||||+||.++|
T Consensus 864 ~~~~~~~~~~~~y~Pkit~IVV~KRhhtRfF~~~~~~~d~~g~~~~~~~~~N~~pGTVVD~~It~p~~~DFyL~Sh~~~q 943 (1046)
T 4f1n_A 864 RKFGPQLNGGNKYDPPVTCIATVKRNQVRFIPIQENAKNEKGEEVAVQSMGNVMPGTVVDRGITSVAHFDFFIQSHQALK 943 (1046)
T ss_dssp HHHTHHHHTSCCCCCCEEEEEEECSCSCCEEECCSEEECTTSCEEECEETTEECTTEEECSSSSCSSBEEEEEECSCCCS
T ss_pred HHHHHHCCCCCCCCCCEEEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCEEEEECCCCCC
T ss_conf 98543003455779877999996576423511455543333443234566799997286466456674128997033477
Q ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCC--CCC-CCCCCCCCCCC--
Q ss_conf 3336873699936999995799999999620124336874345515789999986201231--347-89976667899--
Q 002661 801 GTSRPAHYHVLLDEIGFSPDDLQNLIHSLSYVYQRSTTAISIVAPICYAHLAASQMGQFIK--FED-SSDTSITSAGS-- 875 (895)
Q Consensus 801 GTarPt~Y~Vl~d~~~~~~d~lq~lt~~Lc~~y~~~~~~vsiP~P~~yA~~~a~r~~~~l~--~~~-~~~~~~~~~~~-- 875 (895)
||+|||||+|||||+++++|+||+|||+|||+|+|||++||+|+||||||++|+|||+|++ |+. .+++++.+.++
T Consensus 944 GTarPthY~VL~De~~~~~d~lQ~LTy~LC~~y~r~t~sVsvPaP~yYAhlla~R~r~~~~~~~~~~~~~~~~~~~~~~~ 1023 (1046)
T 4f1n_A 944 GTGVPCHYWCLYDENQSTSDYLQEICNNLCYIFGRSTTSVKVPAPVYYADLLCTRATCFFKAGFELNMAQAPKEKGSKDQ 1023 (1046)
T ss_dssp SSCCCEEEEEEEESSCCCHHHHHHHHHHTTSCCTTSSBCCSSCHHHHHHHHHHHHHHHHHHHTSHHHHHCC---------
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 76657379999679999989999999998655335178862557899999999999999986412022224556677665
Q ss_pred ---CCCCCCCCCCCCCCCCEEEC
Q ss_conf ---99998822221498980329
Q 002661 876 ---VPVPELPRLHKNVESSMFFC 895 (895)
Q Consensus 876 ---~~~~~~~~~~~~~~~~m~~~ 895 (895)
..++.++++|++++++||||
T Consensus 1024 ~~~~~~~~~~~~~~~~~~~mf~i 1046 (1046)
T 4f1n_A 1024 PTVSKNVLLPQVNDNIKSVMYYI 1046 (1046)
T ss_dssp -CCCHHHHSCCCCGGGTTSCTTC
T ss_pred CCCCCCCCCCHHHHHHCCCEEEC
T ss_conf 55676654511335540152359
No 3
>1yvu_A Hypothetical protein AQ_1447; RNAse H fold, RNA binding protein, gene regulation; 2.90A {Aquifex aeolicus} SCOP: b.34.14.1 c.55.3.10 PDB: 2f8s_A 2f8t_A 2nub_A
Probab=1.00 E-value=1 Score=810.46 Aligned_cols=653 Identities=16% Similarity=0.167 Sum_probs=485.6
Q ss_pred EEEEEEEEECCCCEEEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCCEEEECCCCCCCCEEEEE
Q ss_conf 95788978436780799988886168862257712359999999998655414976589287505633778999507999
Q 002661 51 LTNHFKVSVNTTDAVFYHYTVTISGEDKRIAKGKGIGRKVVDKLYQTYSAELAGKRFAYDGEKSLYTVGPLPQNKFEFTV 130 (895)
Q Consensus 51 ~tN~f~i~~~~~~~~iy~Y~V~i~~~~~~~~~~k~~~r~i~~~l~~~~~~~f~~~~~vyDG~~~lyS~~~Lp~~~~~~~v 130 (895)
..|.|+++..+.+..+-. +.| .-++ .|...-++-|+++-. .+..-|....-.|.+++...+..-...
T Consensus 6 ~~~~~~~~~~~~~~~~~~----~~~--~~~~-~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (706)
T 1yvu_A 6 LLNLYRIEYRPKDTTFTV----FKP--THEI-QKEKLNKVRWRVFLQ------TGLPTFRREDEFWCAGKVEKDTLYLTL 72 (706)
T ss_dssp EESEEEEEECCSSCEEBC----CEE--SSCC-CHHHHHHHHHHHHHH------HCSCEEEETTEEEESSCCTTCCCEEEE
T ss_pred HHHHHEEEECCCCCEEEE----ECC--HHHH-HHHHHHHEEEEEEEE------CCCCCCCCCCCCEECCCCCCCEEEEEC
T ss_conf 535442551367733676----345--0788-787641201476510------178652015310343520132489981
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHCHHHH
Q ss_conf 85210000159999999999999988878788852999996322217687999964999987268999999999610010
Q 002661 131 VLEESRAKQQNGSPRGRDSPIGPGKRSKHSFQSKTFMVEISFATKIPLRSIALALKGNEVDNTQDALRVLDIVLRQQAAN 210 (895)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~~~~~i~l~~l~~~l~g~~~~~~~~~lq~ldiil~~~~~~ 210 (895)
. .+. +|+|++++++... | .....+++|+++.+++.. +
T Consensus 73 --~----------------------------~~~--~~~~~~~~~~~~~-------~--~~~~~~~~~~~~~~~~~~--~ 109 (706)
T 1yvu_A 73 --S----------------------------NGE--IVELKRVGEEEFR-------G--FQNERECQELFRDFLTKT--K 109 (706)
T ss_dssp --C----------------------------SSS--CEEEEECCCEECC-------C--CSCHHHHHHHHHHHHHHT--C
T ss_pred --C----------------------------CCC--EEEEEEEEEEECC-------C--CCCCHHHHHHHHHHHHHC--C
T ss_conf --7----------------------------997--8999999886156-------7--899989999999999975--7
Q ss_pred CCCEECCCCCCCCCCCCCCC-CCCCEEEEECCEEEEEECC-CCEEEEEECCEEEEECCCCHHHHHHHHCCCCCCCCCCHH
Q ss_conf 27411043222689978102-6997697414437998518-904564101033462465088999972488997600189
Q 002661 211 WGCLLVRQSFFHDDSRNLVD-VGGGVSGIRGFHSSFRPTQ-GGLSLNMDVSTTMILKPGPVIDFLIANQNVREPRFIDWT 288 (895)
Q Consensus 211 ~~~~~~g~~fF~~~~~~~~~-l~~G~e~~~G~~~Sir~~~-~~l~LniD~~~~~F~~~~~l~d~i~~~~~~~~~~~~~~~ 288 (895)
..+..+||+||++..+...+ -..++|+|+||.+||+..+ ++++||+|++|+ |++..+|+|+|.++... +
T Consensus 110 l~~~~igr~~~~~~~~~~i~~~~~~l~iwPG~~tsi~~~e~~~~~L~~DvshK-vlr~~Tvld~l~~~~~~--~------ 180 (706)
T 1yvu_A 110 VKDKFISDFYKKFRDKITVQGKNRKIALIPEVNEKVLKSEEGYFLLHLDLKFR-IQPFETLQTLLERNDFN--P------ 180 (706)
T ss_dssp HHHHHHHHHHHHHHHHHEEECSSCEEEEEEEEEEEEEEBSSSCEEEEEEEEEE-EEESSCHHHHHHHCCCC--C------
T ss_pred CHHHHHCCCCCCCCCCCCCCCCCCCEEECCCEEEEEEECCCCCEEEEEEEEEE-ECCCCHHHHHHHHHHHC--C------
T ss_conf 74755172445833562056778767981686889885267875999973404-55665399999972304--6------
Q ss_pred HHHHHCCCCEEEECCCCCEE--EEEEC-CCCCCCCCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHCCCC--------CCC
Q ss_conf 99965055199930179359--99406-88888866201645788898889741653989998834941--------134
Q 002661 289 KAKKMLRNLRVKPRHRNMEF--KIVGL-SEKPCNQQFFPMKVKSTEGTNEGETLEITVYDYFTQHCRIE--------LTY 357 (895)
Q Consensus 289 ~i~~~Lkgl~V~~~~~~r~~--~I~gi-~~~~a~~~~F~~~~~~~~g~~~~~g~~iSv~dYf~~~Y~i~--------L~~ 357 (895)
..+..+|++++| +|+++ .+...+..+|. + |.++| ||+++|++. .+.
T Consensus 181 --------~~~~~~y~n~ty~~riddi~~~~~~P~~~f~-~-----------g~~iS---Yyk~~~~~~q~ll~~r~~~~ 237 (706)
T 1yvu_A 181 --------KRIRVKPIGIDFVGRVQDVFKAKEKGEEFFR-L-----------CMERS---THKSSKKAWEELLKNRELRE 237 (706)
T ss_dssp --------TTCEEEETTCCCCEEEEEEEESTTSCHHHHH-H-----------HHHTC---SSHHHHHHHHHHHHCHHHHH
T ss_pred --------HHHHHHCCCCEECCCCCCCCCCCCCCCEEEC-C-----------CCCCC---EEECCCCCCHHHHHCCCCCC
T ss_conf --------5688643255633365740046889513842-8-----------99755---58514675414443024456
Q ss_pred CCCCCEEECCCCCC-CCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEE
Q ss_conf 89975796589998-62113453276366410234999999999999507969999999999872267885334202179
Q 002661 358 SAYLPCLDVGKPKR-PNYLPLELCSLVSLQRYTKALSSMQRASLVEKSRQKPQDRMRTLTDALRSYSYDEDPVLAACGIS 436 (895)
Q Consensus 358 ~p~lP~i~vg~~~~-~~~lP~Elc~i~~~Q~~~~~l~~~q~~~lik~~~~~P~~R~~~i~~~~~~~~~~~~~~l~~fGl~ 436 (895)
+.+|++....... +.++++ +|.+ .+|++.|+++|+++++.+|++|++.|.++++.+ ++.|+.|||+
T Consensus 238 -~~~~~~v~~~~~~p~~lL~p-lc~~-------t~Ltd~q~~~mik~t~~~P~~R~~~i~~~~~~~----~~~L~~fGi~ 304 (706)
T 1yvu_A 238 -KAFLVVLEKGYTYPATILKP-VLTY-------ENLEDEERNEVADIVRMEPGKRLNLIRYILRRY----VKALRDYGWY 304 (706)
T ss_dssp -HCEEEEETTSCEEEGGGEEE-CCCC-------C------HHHHTSTTSCCHHHHHHHHHHHHHHH----HHHHHTTTEE
T ss_pred -CCCEEEECCCCCCCCEEECC-CCCC-------CCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHH----HHHHHHCCCE
T ss_conf -77248842688778644300-1213-------799999999999998259999999999999998----9999976988
Q ss_pred ECCCEEEEEEEEECCCCEECCCCC--CCCC-CCCCCCCCCCEEECCCCCCE---EEEEEECCCC-CHHHHHHHHHHHHHC
Q ss_conf 726302765587159814309842--3589-89743347840211334454---8999958976-489999999998420
Q 002661 437 IGKQLTQVDGRILEIPKLKVGKSE--DCIP-RNGRWNFNNKRFLEATRIDR---WIVVNFSARC-DTSHISRELINCGRN 509 (895)
Q Consensus 437 i~~~~~~v~arvL~~P~I~yg~~~--~~~~-~~g~W~~~~~~f~~p~~l~~---W~ii~~~~~~-~~~~f~~~L~~~~~~ 509 (895)
|+++|++++||||++|+|.++.++ ...+ ..|.|++.+ +|+.++.++. |.+++ ..+. +++.|++.|.++|+.
T Consensus 305 i~~~~~~v~gRVLp~P~i~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~lW~~i~-~~~~~~~~~f~~~L~~~~~~ 382 (706)
T 1yvu_A 305 ISPEEERAKGKLNFKDTVLDAKGKNTKVITNLRKFLELCR-PFVKKDVLSVEIISVSVY-KKLEWRKEEFLKELINFLKN 382 (706)
T ss_dssp ECSSCEECCEECCCCCCEECSSCCEECCSSCCHHHHHHCC-CCCSCSEEEEEEEEEEC------CHHHHHHHHHHHHHHT
T ss_pred ECCCEEECCCEECCCCEEECCCCCCCEECCCCCCCCCCCC-CEECCCCCCCCEEEEEEE-CCHHHHHHHHHHHHHHHHHH
T ss_conf 8886422136873895066478974302368754300037-411143256433899981-66168999999999999987
Q ss_pred CCEECCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHC--CCCCEEEEEECCCCC-------CCCCHHHHHHHHHCCCCC
Q ss_conf 37020488134423531137991468999999999749--999839999917999-------986558899986215694
Q 002661 510 KGIHIERPFTLIEEDQQTRRGNPVVRVERMFELITEKL--PGPPQFILCVLPERK-------NSDIYGPWKKKSLSDFGI 580 (895)
Q Consensus 510 ~G~~i~~p~~i~~~~~~~~~~~~~~~le~~~~~~~~~~--~~~~~lvlvIlp~~~-------~~~~Y~~iK~~~~~~~gV 580 (895)
+||.+..|..+.... +.++.+++.+.... ...+++++||+|+ + +.+.|+.||+++ .+.||
T Consensus 383 ~G~~i~~p~~~~~~~---------~~~~~~~~~l~~~~~~~~~~qlvlvIlp~-~~~~~~~~~~~~Y~~IK~~~-~~~GI 451 (706)
T 1yvu_A 383 KGIKLKIKGKSLILA---------QTREEAKEKLIPVINKIKDVDLVIVFLEE-YPKVDPYKSFLLYDFVKREL-LKKMI 451 (706)
T ss_dssp TTCEEEEEEEEEEEC---------SSTTHHHHHHHHHHTTTSSCSEEEEEEC-----------CHHHHHHHHHH-HHTTC
T ss_pred CCCEECCCCCCCCCC---------HHHHHHHHHHHHHHCCCCCCCEEEEEECC-CCCCCCCCCCCHHHHHHHHH-HCCCC
T ss_conf 496206874223340---------01999999999875005899589999777-44445556754799999998-52898
Q ss_pred EEEEEECCCC----CHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCEEEEEEEEC
Q ss_conf 1145403656----756899999998850598432234323466787458992999998313999999988388999504
Q 002661 581 ATQCISPTKI----NDQYLTNVLLKINSKLGGINSLLALEQSSLIPLIKDTPTMILGMDVSHGSPGRSDIPSVAAVVGSQ 656 (895)
Q Consensus 581 ~TQci~~~k~----~~q~~~Ni~lKiN~KlGG~n~~~~~~~~~~~p~~~~~~tmiiG~dv~h~~~~~~~~pSi~avVaS~ 656 (895)
+||||..+++ +.|++.||++|||+||||+||.++. + ...+|||||+||+|++.++ ..||++|+|||+
T Consensus 452 ~TQcv~~~tl~~~~~~q~~~NI~lkiN~KLGG~nw~L~~------~--~~~~tmiIGiDVsH~~~~~-~~pSv~g~vas~ 522 (706)
T 1yvu_A 452 PSQVILNRTLKNENLKFVLLNVAEQVLAKTGNIPYKLKE------I--EGKVDAFVGIDISRITRDG-KTVNAVAFTKIF 522 (706)
T ss_dssp CCEEEEHHHHHHSCHHHHHHHHHHHHHHHTTCCSCEESC------C--TTCCSEEEEECEEECCCSS-SCCCEEEEEEEE
T ss_pred CEEEEEHHHCCCCCHHHHHHHHHHHHHHHHCCEEEEECC------C--CCCCEEEEEEEEECCCCCC-CCCEEEEEEEEE
T ss_conf 549980102166530789999999999984986156025------8--8885599999886168788-885699999998
Q ss_pred CC-CCCCEEEEEEEECCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 78-86431578999606862000223455568991899999999999871799994699982888901489999999999
Q 002661 657 SW-PLISRYRAAVRTQSSKVEMIDALYKPIANGNDDGIIRELLLDFYRTSKQRKPKQIIIFRDGVSESQFNQVLNIELEQ 735 (895)
Q Consensus 657 d~-~~~~~y~~~~~~q~~~~e~i~~~~~~~~~~~~~~~~~~~l~~f~~~~~~~~P~~IiiyRDGvsegq~~~v~~~Ei~~ 735 (895)
|. ...++|.+....|. ++|++++ ++..+|..| ++.++.+|++|||||||||| ++|+++
T Consensus 523 d~~g~~~~~~~~~~~q~-~~ei~~~------------l~~~~l~~~-~~~~~~~P~rIIiyRDGVse-------~~El~~ 581 (706)
T 1yvu_A 523 NSKGELVRYYLTSYPAF-GEKLTEK------------AIGDVFSLL-EKLGFKKGSKIVVHRDGRLY-------RDEVAA 581 (706)
T ss_dssp CTTSCEEEEEEEEECSC-TTHHHHH------------HHHHHHHHH-HHTTCCTTCEEEEEESSCCC-------HHHHHH
T ss_pred CCCCCEEEEEEEECCCC-CCHHHHH------------HHHHHHHHH-HHHCCCCCCEEEEEECCCCC-------HHHHHH
T ss_conf 58998899998733666-4269999------------999999999-98649998379999688885-------899999
Q ss_pred HHHHHHHHCCCCCCCEEEEEEEECCCCEEECCCCCCCCCCEEEEECCCCCCCCCCEEEEECCC-CCCCCCCCEEEEEECC
Q ss_conf 999999837999971999999531320010389999999900650544468722279620258-6433368736999369
Q 002661 736 IIKAYQHLGEADIPKFTVIVAQKNHHTKLFQASGPENVPPGTVVDTRIVHPRNYDFYMCAHAG-MIGTSRPAHYHVLLDE 814 (895)
Q Consensus 736 i~~a~~~~~~~~~p~it~Ivv~Krh~~Rff~~~~~~N~~pGTvVD~~it~p~~~dFyL~sh~~-~qGTarPt~Y~Vl~d~ 814 (895)
|++||.+ |.|++|||+|+||||+|||+.+ ||+||||||. ..+||||++|.+ +|||+||+||+|+++|
T Consensus 582 Ik~A~~~----~~pkit~IvV~Krh~tRfF~~~---np~pGTvVD~-----~~~~ffL~ss~~~~qGT~rPthY~vv~~D 649 (706)
T 1yvu_A 582 FKKYGEL----YGYSLELLEIIKRNNPRFFSNE---KFIKGYFYKL-----SEDSVILATYNQVYEGTHQPIKVRKVYGE 649 (706)
T ss_dssp HHHHHHH----HTCEEEEEEEECSSCCCEECSC---SCCTTEEEEB-----SSSEEEECCSCCCSTTCCCCEEEEEEECS
T ss_pred HHHHHHH----CCCCEEEEEEEECCCEEEECCC---CCCCEEEEEC-----CCCEEEEEECCCCCCCCCCCEEEEEEECC
T ss_conf 9999997----2994799999704671587889---9997389972-----79769999447766788788799999189
Q ss_pred CCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 99995799999999620124336874345515789999986201231
Q 002661 815 IGFSPDDLQNLIHSLSYVYQRSTTAISIVAPICYAHLAASQMGQFIK 861 (895)
Q Consensus 815 ~~~~~d~lq~lt~~Lc~~y~~~~~~vsiP~P~~yA~~~a~r~~~~l~ 861 (895)
. ++|+||++||+|||+|+||+++||+|+|+||||++|+|++.+++
T Consensus 650 ~--~~d~Lq~lty~Lc~ly~r~t~svslPaPiyYAhllA~r~~~~~~ 694 (706)
T 1yvu_A 650 L--PVEVLCSQILSLTLMNYSSFQPIKLPATVHYSDKITKLMLRGIE 694 (706)
T ss_dssp S--CHHHHHHHHHHGGGGGCCSSSCCCSCTTTTTHHHHHHHHHTCSS
T ss_pred C--CHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 9--99999999999898601648996047589999999999974278
No 4
>2yhb_A QDE-2, post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; 3.65A {Neurospora crassa}
Probab=1.00 E-value=1 Score=773.29 Aligned_cols=403 Identities=29% Similarity=0.461 Sum_probs=339.1
Q ss_pred CCCCEEEC-CCCCCEEEEEEECCC---CCHHHHHHHHHHHHHCCCEECCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 47840211-334454899995897---64899999999984203702048813442353113799146899999999974
Q 002661 471 FNNKRFLE-ATRIDRWIVVNFSAR---CDTSHISRELINCGRNKGIHIERPFTLIEEDQQTRRGNPVVRVERMFELITEK 546 (895)
Q Consensus 471 ~~~~~f~~-p~~l~~W~ii~~~~~---~~~~~f~~~L~~~~~~~G~~i~~p~~i~~~~~~~~~~~~~~~le~~~~~~~~~ 546 (895)
+++++|++ ++++++|+++++... ..++.|++.|.+.|+.+||.+..|........ ..+.+..+ .++.+...
T Consensus 2 ~~~~~f~~p~~~l~~W~vv~~~~~~~~~~~~~f~~~l~~~~~~~G~~i~~p~~~~~~~~---~~~~~~~~--~~~~~~~~ 76 (437)
T 2yhb_A 2 AMAVKVARPCRKIEKWTYLELKGSKANEGVPQAMTAFAEFLNRTGIPINPRFSPGMSMS---VPGSEKEF--FAKVKELM 76 (437)
T ss_dssp ---CCCSBCCCCBCSEEEEEEECSSCCCCHHHHHHHHHHHHHHTTCCBCSCCCCCEEEE---CCSSHHHH--HHHHHHHH
T ss_pred CCCCEECCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEECCCCCCCEECC---CCCHHHHH--HHHHHHCC
T ss_conf 98888626997277799999127778799999999999999876977179987641037---78658887--99875045
Q ss_pred CCCCCEEEEEECCCCCCCCCHHHHHHHHHCCCCCEEEEEECCC---CCHH--HHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 9999839999917999986558899986215694114540365---6756--8999999988505984322343234667
Q 002661 547 LPGPPQFILCVLPERKNSDIYGPWKKKSLSDFGIATQCISPTK---INDQ--YLTNVLLKINSKLGGINSLLALEQSSLI 621 (895)
Q Consensus 547 ~~~~~~lvlvIlp~~~~~~~Y~~iK~~~~~~~gV~TQci~~~k---~~~q--~~~Ni~lKiN~KlGG~n~~~~~~~~~~~ 621 (895)
..++|+|||+|+ ++.+.|+.||+++|++.||+||||+.++ .++| ++.||++|||+||||+||.++. .+
T Consensus 77 --~~~~lvl~ilp~-~~~~~Y~~iK~~~~~~~gI~TQcv~~~~~~k~~~q~s~~~Ni~lKiN~KlGG~n~~l~~----~~ 149 (437)
T 2yhb_A 77 --SSHQFVVVLLPR-KDVAIYNMVKRAADITFGVHTVCCVAEKFLSTKGQLGYFANVGLKVNLKFGGTNHNIKT----PI 149 (437)
T ss_dssp --HTCSEEEEEESS-CCHHHHHHHHHHHHTTSCCEEEEEEHHHHHCSTTHHHHHHHHHHHHHHHTTCBCCCCSS----CC
T ss_pred --CCCCEEEEEECC-CCHHHHHHHHHHHHCCCCCCCEEEEHHHHCCCCCHHHHHHHHHHHHHHHHCCCCEECCC----CC
T ss_conf --898389999788-98348999999870156854189726672476628999999999999984992402366----64
Q ss_pred CCCCCCCEEEEEEEEECCC---CC--CCCCCEEEEEEEECCCCCCCEEEEEEEECC-CCCEECCCCCCCCCCCCHHHHHH
Q ss_conf 8745899299999831399---99--999883889995047886431578999606-86200022345556899189999
Q 002661 622 PLIKDTPTMILGMDVSHGS---PG--RSDIPSVAAVVGSQSWPLISRYRAAVRTQS-SKVEMIDALYKPIANGNDDGIIR 695 (895)
Q Consensus 622 p~~~~~~tmiiG~dv~h~~---~~--~~~~pSi~avVaS~d~~~~~~y~~~~~~q~-~~~e~i~~~~~~~~~~~~~~~~~ 695 (895)
|++...+|||||+||+||+ ++ ....||++|+|||+|. ..++|.+.+++|. +++|++++| ++|++
T Consensus 150 ~~~~~~~tmiiG~DV~H~~~~~~g~~~~~~pSiaa~vaS~d~-~~~~y~~~~~~Q~~~~~E~i~~l---------~~~~~ 219 (437)
T 2yhb_A 150 PLLAKGKTMVVGYDVTHPTNLAAGQSPASAPSIVGLVSTIDQ-HLGQWPAMVWNNPHGQESMTEQF---------TDKFK 219 (437)
T ss_dssp HHHHTTCEEEEEEEECCCSCCCTTCCSTTSCEEEEEEECCST-TCCCCCEEEEEETTTHHHHHHHH---------HHHHH
T ss_pred CCCCCCCEEEEEEEEECCCCCCCCCCCCCCCEEEEEEEECCC-CCCEEEEEEEECCCCCHHHHHHH---------HHHHH
T ss_conf 545778779998887525655677767899979999873499-96744027898677644489999---------99999
Q ss_pred HHHHHHHH--HHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCC-CCCEEEEEEEECCCCEEECCCC---
Q ss_conf 99999998--71799994699982888901489999999999999999837999-9719999995313200103899---
Q 002661 696 ELLLDFYR--TSKQRKPKQIIIFRDGVSESQFNQVLNIELEQIIKAYQHLGEAD-IPKFTVIVAQKNHHTKLFQASG--- 769 (895)
Q Consensus 696 ~~l~~f~~--~~~~~~P~~IiiyRDGvsegq~~~v~~~Ei~~i~~a~~~~~~~~-~p~it~Ivv~Krh~~Rff~~~~--- 769 (895)
++|..|++ .+++.+|++|||||||||||||.+|+++|+++|++||.++..+| +|+||||||+||||+|||+.+.
T Consensus 220 ~~L~~~~~~~~~~~~~P~rIiiyRDGVseGqf~~V~~~El~~i~~a~~~~~~~~~~p~it~Ivv~Krh~tRff~~~~~~~ 299 (437)
T 2yhb_A 220 TRLELWRSNPANNRSLPENILIFRDGVSEGQFQMVIKDELPLVRAACKLVYPAGKLPRITLIVSVKRHQTRFFPTDPKHI 299 (437)
T ss_dssp HHHHHHHTCGGGTTCCCSEEEEEEESCCTTTHHHHHHHTHHHHHHHHHHHSCTTCCCEEEEEEEC---------------
T ss_pred HHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCEECCCCCCCC
T ss_conf 99999986554337998638999177566779999999999999999985043679877999997145532546775433
Q ss_pred ---CCCCCCEEEEECCCCCCCCCCEEEEECCCCCCCCCCCEEEEEECCC------CCCHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf ---9999990065054446872227962025864333687369993699------9995799999999620124336874
Q 002661 770 ---PENVPPGTVVDTRIVHPRNYDFYMCAHAGMIGTSRPAHYHVLLDEI------GFSPDDLQNLIHSLSYVYQRSTTAI 840 (895)
Q Consensus 770 ---~~N~~pGTvVD~~it~p~~~dFyL~sh~~~qGTarPt~Y~Vl~d~~------~~~~d~lq~lt~~Lc~~y~~~~~~v 840 (895)
.+|++||||||++||+|..|||||+||.++|||+|||||+||+||+ ++++|+||+|||+|||+|+|||++|
T Consensus 300 ~~~~~N~~pGTvVD~~it~p~~~dFyL~Sh~~~qGTarPthY~Vl~de~f~~~~~~~~~d~lq~lTy~Lc~~y~r~t~sV 379 (437)
T 2yhb_A 300 HFKSKSPKEGTVVDRGVTNVRYWDFFLQAHASLQGTARSAHYTVLVDEIFRADYGNKAADTLEQLTHDMCYLFGRATKAV 379 (437)
T ss_dssp ----------------------------------------CEEEEEESSHHHHHGGGHHHHHHHHHHHHHTC--------
T ss_pred CCCCCCCCCCEEECCCCCCCCCCEEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 44668999855715644677773289973312104687638999937854323579998999999999877520315887
Q ss_pred CCCCHHHHHHHHHHHHCCCCCC-CCCCCCCCCCCCC--CCCCCCCCCCCCCCCCEEEC
Q ss_conf 3455157899999862012313-4789976667899--99998822221498980329
Q 002661 841 SIVAPICYAHLAASQMGQFIKF-EDSSDTSITSAGS--VPVPELPRLHKNVESSMFFC 895 (895)
Q Consensus 841 siP~P~~yA~~~a~r~~~~l~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~m~~~ 895 (895)
|+|+|+||||++|+|||+||.. .+.++++|+++++ .+...+.++|++++++||||
T Consensus 380 sipaP~yYAh~~a~R~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~mfyl 437 (437)
T 2yhb_A 380 SICPPAYYADLVCDRARIHQKELFDALDENDSVKTDDFARWGNSGAVHPNLRNSMYYI 437 (437)
T ss_dssp --CHHHHHHHHHHHHHHHHCHHHHHHHHHTSCCCHHHHHHHHHHTSCCGGGTTSCTTC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCEEC
T ss_conf 7487899999999999987454115777777667777432223466597663783569
No 5
>1u04_A Argonaute, hypothetical protein PF0537; RNAI, silencing, PIWI, PAZ, RISC, slicer, RNAse H hydrolase-gene regulation complex; 2.25A {Pyrococcus furiosus} SCOP: b.34.14.1 c.55.3.10 PDB: 1z25_A 1z26_A
Probab=1.00 E-value=1 Score=756.55 Aligned_cols=667 Identities=13% Similarity=0.105 Sum_probs=487.2
Q ss_pred EEEEEEEEEEEEEC-CCCEEEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCCE--EEECCCCCC
Q ss_conf 78999578897843-678079998888616886225771235999999999865541497658928750--563377899
Q 002661 47 RISLLTNHFKVSVN-TTDAVFYHYTVTISGEDKRIAKGKGIGRKVVDKLYQTYSAELAGKRFAYDGEKS--LYTVGPLPQ 123 (895)
Q Consensus 47 ~i~l~tN~f~i~~~-~~~~~iy~Y~V~i~~~~~~~~~~k~~~r~i~~~l~~~~~~~f~~~~~vyDG~~~--lyS~~~Lp~ 123 (895)
++.+.+|||++... .++ .+|+|+|++ +|+++.+ ....++..+.+. + | .++|||. . ||++.+|+.
T Consensus 3 ~~~~~~n~~~~~~~~~~~-~~y~y~v~~----~p~~~~~-~~~~~~~~~~~~----~-g-~~~fdg~-~~~l~~~~~l~~ 69 (771)
T 1u04_A 3 KAIVVINLVKINKKIIPD-KIYVYRLFN----DPEEELQ-KEGYSIYRLAYE----N-V-GIVIDPE-NLIIATTKELEY 69 (771)
T ss_dssp EEEEEBSEEEBCGGGSCS-CEEEEEC-----------------CCHHHHHHH----T-T-EEEEETT-TTEEEESSCCCC
T ss_pred CEEEEEEEEEEECCCCCC-EEEEEEEEC----CCHHHHH-HHHHHHHHHHHH----C-C-CEEECCC-CEEEECCCEECC
T ss_conf 069994068873246887-059998623----8758889-999899987865----3-7-1896475-203222532146
Q ss_pred CCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf 95079998521000015999999999999998887878885299999632221768799996499998726899999999
Q 002661 124 NKFEFTVVLEESRAKQQNGSPRGRDSPIGPGKRSKHSFQSKTFMVEISFATKIPLRSIALALKGNEVDNTQDALRVLDIV 203 (895)
Q Consensus 124 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~~~~~i~l~~l~~~l~g~~~~~~~~~lq~ldii 203 (895)
+ +..+.++++.++++. +|++|++
T Consensus 70 ~--------------------------------------~~~~~~~~~~~~~~~-------------------~~~~n~i 92 (771)
T 1u04_A 70 E--------------------------------------GEFIPEGEISFSELR-------------------NDYQSKL 92 (771)
T ss_dssp S--------------------------------------SCCEEEEEECGGGSC-------------------HHHHHHH
T ss_pred C--------------------------------------CCEEEEEEEECCEEC-------------------HHHHHHH
T ss_conf 8--------------------------------------973789999904402-------------------9999999
Q ss_pred HHCHHHHCC-----CEECCCCCCCCCCCCCCCCCCCEEEEECCEEEEEECCCCEEEEEECCEEEEECCCCHHHHHHHHCC
Q ss_conf 961001027-----411043222689978102699769741443799851890456410103346246508899997248
Q 002661 204 LRQQAANWG-----CLLVRQSFFHDDSRNLVDVGGGVSGIRGFHSSFRPTQGGLSLNMDVSTTMILKPGPVIDFLIANQN 278 (895)
Q Consensus 204 l~~~~~~~~-----~~~~g~~fF~~~~~~~~~l~~G~e~~~G~~~Sir~~~~~l~LniD~~~~~F~~~~~l~d~i~~~~~ 278 (895)
+|..+...+ +..+||+||++. .+ +.+++|+|+.+||+..+++++||+|++|++ .+..+|+|+|.+..+
T Consensus 93 ~r~~l~~~~~~~~~l~~~~r~~~~~~-----~~-~~~~~~~~~~tsi~~~e~~~ll~~di~hkv-~r~~t~~d~~~~~~~ 165 (771)
T 1u04_A 93 VLRLLKENGIGEYELSKLLRKFRKPK-----TF-GDYKVIPSVEMSVIKHDEDFYLVIHIIHQI-QSMKTLWELVNKDPK 165 (771)
T ss_dssp HHHHHHHTTCSHHHHHHHHTTTSCCE-----EE-TTEEEEEEEEEEEEECSSCEEEEEEEEEEE-EESSCHHHHTTTCHH
T ss_pred HHHHHHHCCCCHHHHHHHHHHCCCCC-----CC-CCCEEEECCEEEEEECCCCEEEEEEEEEEE-EEHHHHHHHHHHHHH
T ss_conf 99999874620588999766207983-----34-662799873466885378438999866567-555679999999999
Q ss_pred CCCCCCCCHHHHHHHCCCCEEEEC--------C--CCCEEEEEECCCCCCCCC--CC---CCCCCCCCCCCCCCCEEEEH
Q ss_conf 899760018999965055199930--------1--793599940688888866--20---16457888988897416539
Q 002661 279 VREPRFIDWTKAKKMLRNLRVKPR--------H--RNMEFKIVGLSEKPCNQQ--FF---PMKVKSTEGTNEGETLEITV 343 (895)
Q Consensus 279 ~~~~~~~~~~~i~~~Lkgl~V~~~--------~--~~r~~~I~gi~~~~a~~~--~F---~~~~~~~~g~~~~~g~~iSv 343 (895)
..+...+...|..|.+. | ++++|++++ .++..+.+ +| ..++ |+ .++++
T Consensus 166 -------~~~~~~~~~~g~~~~~~~~~~~~~vy~~n~~~Y~~~~-~~d~~~~~~~~~~~~~~~~----~~-----~~~~~ 228 (771)
T 1u04_A 166 -------ELEEFLMTHKENLMLKDIASPLKTVYKPCFEEYTKKP-KLDHNQEIVKYWYNYHIER----YW-----NTPEA 228 (771)
T ss_dssp -------HHHHHHHHSTTTCEEEETTSTTCCEEEECBCTTSSCB-CEECCHHHHHHHHHHHHHH----HC-----CSHHH
T ss_pred -------HHHHHHHHCCCCEEEEECCCCCEEEEECCCCEEECCC-CCCCCCCCHHHEECEEECC----CC-----CCCCH
T ss_conf -------9998887356737853113444268604662441588-5123789854401302137----78-----87411
Q ss_pred HHHHHHHCCCCCCCCCCCCEEECCC-------CCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHH
Q ss_conf 8999883494113489975796589-------998621134532763664102349999999999995079699999999
Q 002661 344 YDYFTQHCRIELTYSAYLPCLDVGK-------PKRPNYLPLELCSLVSLQRYTKALSSMQRASLVEKSRQKPQDRMRTLT 416 (895)
Q Consensus 344 ~dYf~~~Y~i~L~~~p~lP~i~vg~-------~~~~~~lP~Elc~i~~~Q~~~~~l~~~q~~~lik~~~~~P~~R~~~i~ 416 (895)
.+||.++|++ ++ ++||++.... ..+.++|+||||.++|. ...++....++|..+++..|++|.+.+.
T Consensus 229 ~~~y~~~y~i--~d-~~QPllvs~~~~~~~~~~~~~i~LiPELc~~TG~---~~~~~~~~MK~la~~trl~P~~R~~~l~ 302 (771)
T 1u04_A 229 KLEFYRKFGQ--VD-LKQPAILAKFASKIKKNKNYKIYLLPQLVVPTYN---AEQLESDVAKEILEYTKLMPEERKELLE 302 (771)
T ss_dssp HHHHHHHHCS--CC-TTSCEEEEEESCC-----CCCEEECTTTEEEEEE---GGGC----CCHHHHHHCCCHHHHHHHHH
T ss_pred HHHHHHHCCC--CC-CCCCEEEECCHHHCCCCCCCEEEECHHHHHHCCC---HHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 6878876486--76-7887698514432467889603642476533674---3566689999999987779899999999
Q ss_pred HHHHHC-----CCC--CCCCCCEEEEEECCCEEEEEEEEECCCCEECCCCCCCCCCCCCCC--CCCCEEECCC-------
Q ss_conf 998722-----678--853342021797263027655871598143098423589897433--4784021133-------
Q 002661 417 DALRSY-----SYD--EDPVLAACGISIGKQLTQVDGRILEIPKLKVGKSEDCIPRNGRWN--FNNKRFLEAT------- 480 (895)
Q Consensus 417 ~~~~~~-----~~~--~~~~l~~fGl~i~~~~~~v~arvL~~P~I~yg~~~~~~~~~g~W~--~~~~~f~~p~------- 480 (895)
++++++ +.+ ....|+.|+ .++.. +.+.++++.+-.+..++ ......++|. +++.+++.+.
T Consensus 303 ~~~~~l~~~~~~~~~~~~~~l~~~~-~l~~~-~~v~~~~~~~~~i~~~~--~~~~~~adW~~~~~~~~~~~~~~~p~~l~ 378 (771)
T 1u04_A 303 NILAEVDSDIIDKSLSEIEVEKIAQ-ELENK-IRVRDDKGNSVPISQLN--VQKSQLLLWTNYSRKYPVILPYEVPEKFR 378 (771)
T ss_dssp HHHHHCCCSSBCSSCCEEEEEECCG-GGGSS-EEEECSSSCEEESCCC----------CGGGGSCCCCCCCCSBCCTHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHH-CCCCC-CCCCCCCCCCCCEEECC--CCCCCCCCCCHHHCCCCCEECCCCHHHHH
T ss_conf 9999861544307988999975554-11767-50025456645326327--67776677605537785110465426550
Q ss_pred ---CCCEEEEEEECCCCCHHHHH---------HHHHHHHHCCCEE---------CCCCCEEEECCCC-CC-CCCCHHHHH
Q ss_conf ---44548999958976489999---------9999984203702---------0488134423531-13-799146899
Q 002661 481 ---RIDRWIVVNFSARCDTSHIS---------RELINCGRNKGIH---------IERPFTLIEEDQQ-TR-RGNPVVRVE 537 (895)
Q Consensus 481 ---~l~~W~ii~~~~~~~~~~f~---------~~L~~~~~~~G~~---------i~~p~~i~~~~~~-~~-~~~~~~~le 537 (895)
.|+.|++++-.....+.+|+ ..|.+.++.+|+. ++.|...+.+++. .. .....+.++
T Consensus 379 ~~~~i~~wil~~~~~~~~~~~f~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~p~~~~~~~~~~i~~dl~~~~~i~ 458 (771)
T 1u04_A 379 KIREIPMFIILDSGLLADIQNFATNEFRELVKSMYYSLAKKYNSLAKKARSTNEIGLPFLDFRGKEKVITEDLNSDKGII 458 (771)
T ss_dssp HCCCCCEEEEEETTSCHHHHHHHHHHHHHHHHHHCC-----------------------------CEEEEECTTSHHHHH
T ss_pred CCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCEECCCCCCHHHHH
T ss_conf 43555359999577168899888887666778999987532231011035664225787333467514315655347799
Q ss_pred HHHHHHHHHC-CCCCEEEEEECCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCC------------HHHHHHHHHHHHH
Q ss_conf 9999999749-99983999991799998655889998621569411454036567------------5689999999885
Q 002661 538 RMFELITEKL-PGPPQFILCVLPERKNSDIYGPWKKKSLSDFGIATQCISPTKIN------------DQYLTNVLLKINS 604 (895)
Q Consensus 538 ~~~~~~~~~~-~~~~~lvlvIlp~~~~~~~Y~~iK~~~~~~~gV~TQci~~~k~~------------~q~~~Ni~lKiN~ 604 (895)
.+++.+.+.. +..+++++++++..++.+.|+.||+.+ .+.|||||||..+++. .+++.||++|||+
T Consensus 459 ~~l~~~~~~~~~~~~~lvlv~l~~~~~~d~Y~~IK~~~-~~~gIpTQcV~~~Tl~~~~~k~~~~~l~~sia~NIalqIn~ 537 (771)
T 1u04_A 459 EVVEQVSSFMKGKELGLAFIAARNKLSSEKFEEIKRRL-FNLNVISQVVNEDTLKNKRDKYDRNRLDLFVRHNLLFQVLS 537 (771)
T ss_dssp HHHHHHHHHHTTCSCEEEEEEECTTSCHHHHHHHHHHH-HHTTEEEEEEEHHHHHHCEETTEEEEECHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHH-HCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 99999997515789878999975898866689999998-54896639984350067654433231328999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCEEEEEEEECCCCCCCEEEEEEEECCCCCEECCCCCCC
Q ss_conf 05984322343234667874589929999983139999999883889995047886431578999606862000223455
Q 002661 605 KLGGINSLLALEQSSLIPLIKDTPTMILGMDVSHGSPGRSDIPSVAAVVGSQSWPLISRYRAAVRTQSSKVEMIDALYKP 684 (895)
Q Consensus 605 KlGG~n~~~~~~~~~~~p~~~~~~tmiiG~dv~h~~~~~~~~pSi~avVaS~d~~~~~~y~~~~~~q~~~~e~i~~~~~~ 684 (895)
||||+||.++. | ..++||||+||+|+.++. ..++++|+|+|.++ ...+|.+.+..|.++ |.++ +
T Consensus 538 KLGG~pW~L~~------p---~~~tmiIGiDV~H~~~~~-~svs~~A~V~s~dg-~~~~~~s~~~~~~~~-E~i~-l--- 601 (771)
T 1u04_A 538 KLGVKYYVLDY------R---FNYDYIIGIDVAPMKRSE-GYIGGSAVMFDSQG-YIRKIVPIKIGEQRG-ESVD-M--- 601 (771)
T ss_dssp HTTCBCCEESC------C---CSSSEEEEEEEEEECCTT-TCEEEEEEEEETTS-CEEEEEEEECCCCSS-SSCC-H---
T ss_pred HHCCCCEEECC------C---CCCEEEEEEEEECCCCCC-CCEEEEEEEECCCC-CEEEEEEEEEECCCC-CEEC-H---
T ss_conf 85983326068------9---998799999987479899-74699999977999-789998887303776-3773-9---
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCEE
Q ss_conf 56899189999999999987179999469998288890148999999999999999983799997199999953132001
Q 002661 685 IANGNDDGIIRELLLDFYRTSKQRKPKQIIIFRDGVSESQFNQVLNIELEQIIKAYQHLGEADIPKFTVIVAQKNHHTKL 764 (895)
Q Consensus 685 ~~~~~~~~~~~~~l~~f~~~~~~~~P~~IiiyRDGvsegq~~~v~~~Ei~~i~~a~~~~~~~~~p~it~Ivv~Krh~~Rf 764 (895)
..++.++|..|++.+++.+|+||||||||+ |+++|+++|++||.++ .|+++||+|+||||+||
T Consensus 602 ------~~~l~~~L~~y~~~n~~~lP~RIIiyRDG~-------v~~~El~~i~ea~~~~----~p~itfIvV~Krh~tRf 664 (771)
T 1u04_A 602 ------NEFFKEMVDKFKEFNIKLDNKKILLLRDGR-------ITNNEEEGLKYISEMF----DIEVVTMDVIKNHPVRA 664 (771)
T ss_dssp ------HHHHHHHHHHHHHTTCCCTTCEEEEECSBC-------CCHHHHHHHHHHHHHH----TCEEEEEEEESCCCCCB
T ss_pred ------HHHHHHHHHHHHHHHCCCCCCEEEEECCCC-------CCHHHHHHHHHHHHHC----CCCEEEEEEEECCCEEE
T ss_conf ------999999999999970799997799991888-------8789999999999855----99889999994575156
Q ss_pred ECCCCCCCCCCEEEEECCCCCCCCCCEEEEECC--CCCCCCCCCEE--EEEECCCCCC----HHHHHHHHHHHHCCCCCC
Q ss_conf 038999999990065054446872227962025--86433368736--9993699999----579999999962012433
Q 002661 765 FQASGPENVPPGTVVDTRIVHPRNYDFYMCAHA--GMIGTSRPAHY--HVLLDEIGFS----PDDLQNLIHSLSYVYQRS 836 (895)
Q Consensus 765 f~~~~~~N~~pGTvVD~~it~p~~~dFyL~sh~--~~qGTarPt~Y--~Vl~d~~~~~----~d~lq~lt~~Lc~~y~~~ 836 (895)
|. |.+|||||| . ||||+||. +.|||++|+|| +|++|+++++ +|+||.+||+|||+|+||
T Consensus 665 F~-----~~~pGTVV~-------~-DFyL~Sh~v~~~qGTprPthY~~~Vi~D~~~~~~~~~~D~lq~lty~Lchlyyn~ 731 (771)
T 1u04_A 665 FA-----NMKMYFNLG-------G-AIYLIPHKLKQAKGTPIPIKLAKKRIIKNGKVEKQSITRQDVLDIFILTRLNYGS 731 (771)
T ss_dssp SS-----CSCEEEEET-------T-EEEEECSCCSSSCSCCCCEEEEEEEEEETTEEEECCCCHHHHHHHHHHHTCCTTC
T ss_pred EC-----CCCCEEEEE-------C-CEEEEECCCCCCCCCCCCEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 46-----999804996-------8-8899834545888888878999788752788787778999999999865501457
Q ss_pred CC-CCCCCCHHHHHHHHHHHHCCCCCCCC
Q ss_conf 68-74345515789999986201231347
Q 002661 837 TT-AISIVAPICYAHLAASQMGQFIKFED 864 (895)
Q Consensus 837 ~~-~vsiP~P~~yA~~~a~r~~~~l~~~~ 864 (895)
++ ++|+||||||||++|++++.++++++
T Consensus 732 ~~~svrvPAP~~YAhklA~lvgq~~~~~~ 760 (771)
T 1u04_A 732 ISADMRLPAPVHYAHKFANAIRNEWKIKE 760 (771)
T ss_dssp SSCCCCSCHHHHHHHHHHHHHHTTCCCCH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHCCCH
T ss_conf 99996478127999999999976624576
No 6
>3ho1_A Argonaute; argonaute, protein-DNA-RNA complex, nucleic acid binding Pro RNA complex; 2.60A {Thermus thermophilus} PDB: 3dlb_A* 3dlh_A* 3f73_A* 3hm9_A 3hvr_A 3hxm_A* 3hk2_A 3hjf_A
Probab=1.00 E-value=1 Score=639.84 Aligned_cols=640 Identities=15% Similarity=0.170 Sum_probs=450.5
Q ss_pred CEEEEEEEEEEEE-ECCCCEEEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCCEEEECCCCCCC
Q ss_conf 8789995788978-436780799988886168862257712359999999998655414976589287505633778999
Q 002661 46 RRISLLTNHFKVS-VNTTDAVFYHYTVTISGEDKRIAKGKGIGRKVVDKLYQTYSAELAGKRFAYDGEKSLYTVGPLPQN 124 (895)
Q Consensus 46 ~~i~l~tN~f~i~-~~~~~~~iy~Y~V~i~~~~~~~~~~k~~~r~i~~~l~~~~~~~f~~~~~vyDG~~~lyS~~~Lp~~ 124 (895)
..+.|.-|-|.+. +..++...|.|.|.+.+. . ..+.-..++.+++... |...+= -++.|.|-.+ |..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~-----~~~~~~-~~~~~~~~~~-~~~ 72 (685)
T 3ho1_A 5 GKTEVFLNRFALRPLNPEELRPWRLEVVLDPP----P-GREEVYPLLAQVARRA-----GGVTVR-MGDGLASWSP-PEV 72 (685)
T ss_dssp CCEEEEEEEEEEEECCTTTSSCEEEEEEEESC----C-CTTTHHHHHHHHHHHT-----CSSEEE-ETTEEEESSC-TTT
T ss_pred CCEEEEEEEEECCCCCHHHCCEEEEEEECCCC----C-CCCHHHHHHHHHHHHH-----CCEEEE-ECCCEECCCC-CHH
T ss_conf 52058975003454885348505899850799----8-8414778999999873-----874786-3274000467-055
Q ss_pred -CEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf -5079998521000015999999999999998887878885299999632221768799996499998726899999999
Q 002661 125 -KFEFTVVLEESRAKQQNGSPRGRDSPIGPGKRSKHSFQSKTFMVEISFATKIPLRSIALALKGNEVDNTQDALRVLDIV 203 (895)
Q Consensus 125 -~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~~~~~i~l~~l~~~l~g~~~~~~~~~lq~ldii 203 (895)
..|-+|. ++.....|.+.-.=...+++.+ + .--++|+.+
T Consensus 73 ~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~------------~-~~~~~~~~~ 112 (685)
T 3ho1_A 73 LVLEGTLA---------------------------RMGQTYAYRLYPKGRRPLDPKD------------P-GERSVLSAL 112 (685)
T ss_dssp SCCEEEEE---------------------------CSSCEEEEEEEEEEECCCCTTS------------H-HHHHHHHHH
T ss_pred HHCCCHHC---------------------------CCCCCCCEEEEECCCCCCCCCC------------H-HHHHHHHHH
T ss_conf 41022000---------------------------2368866365305664578898------------6-788999999
Q ss_pred HHCHHH----H-CCCEECCCCCCCCCCCCCCCCCCCEEEEECCEEEEEECC-CCEEEEEECCEEEEECCCCHHHHHHHHC
Q ss_conf 961001----0-274110432226899781026997697414437998518-9045641010334624650889999724
Q 002661 204 LRQQAA----N-WGCLLVRQSFFHDDSRNLVDVGGGVSGIRGFHSSFRPTQ-GGLSLNMDVSTTMILKPGPVIDFLIANQ 277 (895)
Q Consensus 204 l~~~~~----~-~~~~~~g~~fF~~~~~~~~~l~~G~e~~~G~~~Sir~~~-~~l~LniD~~~~~F~~~~~l~d~i~~~~ 277 (895)
-|..+- . .+...-|.-.+-.+ + .-|.|.|+.+|+-..|.+.. +++.|.+|..+.. +++.++.+|+++..
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~g~~~~v~~~~~~~~~l~vd~~~r~-~~~~~~~~~l~~~~ 187 (685)
T 3ho1_A 113 ARRLLQERLRRLEGVWVEGLAVYRRE-H---ARGPGWRVLGGAVLDLWVSDSGAFLLEVDPAYRI-LCEMSLEAWLAQGH 187 (685)
T ss_dssp HHHHHHHHHHTCSSSEEETTEEEEEE-E---EEETTEEEEEEEEEEEEECSSSEEEEEEEEEEEE-EECSCHHHHHHHSC
T ss_pred HHHHHHHHHHHHHCEEECCEEEEEEC-C---CCCCCEEEECCEEEEEEECCCCCEEEEEEEHEEE-CCHHHHHHHHHHCC
T ss_conf 99999999876533377647898406-8---8777438843669999987788679997403011-47644999998179
Q ss_pred CCCCCCCCCHHHHHHHCCCCEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHCCCCCCC
Q ss_conf 88997600189999650551999301793599940688888866201645788898889741653989998834941134
Q 002661 278 NVREPRFIDWTKAKKMLRNLRVKPRHRNMEFKIVGLSEKPCNQQFFPMKVKSTEGTNEGETLEITVYDYFTQHCRIELTY 357 (895)
Q Consensus 278 ~~~~~~~~~~~~i~~~Lkgl~V~~~~~~r~~~I~gi~~~~a~~~~F~~~~~~~~g~~~~~g~~iSv~dYf~~~Y~i~L~~ 357 (895)
. |. ..|.++|+.++|+|.+++. ..++..|-. ..+|++||++++|.+ +.
T Consensus 188 ~---------------~~-~~v~~~y~~~~~~~~~~~~-~~p~~~~l~-------------~~~s~~~y~~~k~~~--~~ 235 (685)
T 3ho1_A 188 P---------------LP-KRVRNAYDRRTWELLRLGE-EDPKELPLP-------------GGLSLLDYHASKGRL--QG 235 (685)
T ss_dssp C---------------CC-SEEEESSSCCEECCCEEEC-CCTTCC-------------------CSTTTTTTTSTT--TT
T ss_pred C---------------CC-HHHHHHCCCCEEEEEECCC-CCCHHEECC-------------CCCCHHHHHHHCCCC--CC
T ss_conf 8---------------32-7776431662489863366-893323457-------------886599997542653--34
Q ss_pred CCCCCEEEC-CCC---CC-----CCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 899757965-899---98-----621134532763664102349999999999995079699999999998722678853
Q 002661 358 SAYLPCLDV-GKP---KR-----PNYLPLELCSLVSLQRYTKALSSMQRASLVEKSRQKPQDRMRTLTDALRSYSYDEDP 428 (895)
Q Consensus 358 ~p~lP~i~v-g~~---~~-----~~~lP~Elc~i~~~Q~~~~~l~~~q~~~lik~~~~~P~~R~~~i~~~~~~~~~~~~~ 428 (895)
-++|.|.. .+. .+ .++|.|||| +.+. ++.+.+ .++++.|++|++.+.++.+.+
T Consensus 236 -~~~~~vv~~~~~~~~~~~i~~~~~~l~p~l~-m~~l-------~~~~~~---~~trlsP~~R~~~l~~~~~~i------ 297 (685)
T 3ho1_A 236 -REGGRVAWVADPKDPRKPIPHLTGLLVPVLT-LEDL-------HEEEGS---LALSLPWEERRRRTREIASWI------ 297 (685)
T ss_dssp -SCCCSEEEECSCC---CCEEEETTSEEEECC-TTTT-------SSCSSC---CCCCCCHHHHHHHHHHHHHHH------
T ss_pred -CCCCEEEEEECCCCCCCCCEEEEEEECHHHH-HHHH-------HHHHHH---CCCCCCHHHHHHHHHHHHHHH------
T ss_conf -6786599995544578733244256322767-8777-------666640---625679899999999999998------
Q ss_pred CCCEEEEEECCCEEEEEEEEECCCCEECCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEEECCC-CCHHHHHHHHHHHH
Q ss_conf 34202179726302765587159814309842358989743347840211334454899995897-64899999999984
Q 002661 429 VLAACGISIGKQLTQVDGRILEIPKLKVGKSEDCIPRNGRWNFNNKRFLEATRIDRWIVVNFSAR-CDTSHISRELINCG 507 (895)
Q Consensus 429 ~l~~fGl~i~~~~~~v~arvL~~P~I~yg~~~~~~~~~g~W~~~~~~f~~p~~l~~W~ii~~~~~-~~~~~f~~~L~~~~ 507 (895)
++.|||+ +.+|++++||+||||+| +++.. + .+.|++.+.+|+.++.. .|++++++.. ..++.|+++|.+.|
T Consensus 298 -~~~~Gl~-~~~~i~v~gRvLppp~I-~g~~~-~---~~~~d~~~~~~~~~~~~-~~ail~l~~~~~~~~~f~~~L~~va 369 (685)
T 3ho1_A 298 -GRRLGLG-TPEAVRAQAYRLSIPKL-MGRRA-V---SKPADALRVGFYRAQET-ALALLRLDGAQGWPEFLRRALLRAF 369 (685)
T ss_dssp -HHTTCSC-CCEEEEEEEEECCCCCE-ESSSB-C---SSGGGHHHHCCSSCCCE-EEEEEECSSCCSCCHHHHHHHHHHH
T ss_pred -HHHCCCC-CCCCCEEEEEECCHHHH-CCCCC-C---CCCHHHCCCCCEECCCC-EEEEEECCCCHHHHHHHHHHHHHHH
T ss_conf -8853999-89711687788388995-58997-5---78621114753113673-5999962672678999999999988
Q ss_pred HCCCEECCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHHCCCCCEEEEEE-
Q ss_conf 2037020488134423531137991468999999999749999839999917999986558899986215694114540-
Q 002661 508 RNKGIHIERPFTLIEEDQQTRRGNPVVRVERMFELITEKLPGPPQFILCVLPERKNSDIYGPWKKKSLSDFGIATQCIS- 586 (895)
Q Consensus 508 ~~~G~~i~~p~~i~~~~~~~~~~~~~~~le~~~~~~~~~~~~~~~lvlvIlp~~~~~~~Y~~iK~~~~~~~gV~TQci~- 586 (895)
+.+||.+..|... +.++ ....+...+++..+ .++|+|+||+|+ ++.+.|+.||+.+ .+.|||||||.
T Consensus 370 ~~~G~~i~~~~~~--~~~~-----d~~~~~~~l~~~~~---~~~qlvvvIlp~-~~~~~y~~IKk~~-~~~GIpTQcV~~ 437 (685)
T 3ho1_A 370 GASGASLRLHTLH--AHPS-----QGLAFREALRKAKE---EGVQAVLVLTPP-MAWEDRNRLKALL-LREGLPSQILNV 437 (685)
T ss_dssp HSSSSCEEEEECC--CCGG-----GTHHHHHHHHHHHH---TTCCEEEEEESC-CCHHHHHHHHHHH-HHTTCCEEEEES
T ss_pred HHCCCEECCCEEE--CCCC-----CHHHHHHHHHHHHH---CCCCEEEEEECC-CCCCHHHHHHHHH-HCCCCCCEEEEC
T ss_conf 7679376355110--4777-----36999999998642---399889999779-9954789999998-639976389961
Q ss_pred C-CCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCEEEEEEEECCC-CCCCEE
Q ss_conf 3-65675689999999885059843223432346678745899299999831399999998838899950478-864315
Q 002661 587 P-TKINDQYLTNVLLKINSKLGGINSLLALEQSSLIPLIKDTPTMILGMDVSHGSPGRSDIPSVAAVVGSQSW-PLISRY 664 (895)
Q Consensus 587 ~-~k~~~q~~~Ni~lKiN~KlGG~n~~~~~~~~~~~p~~~~~~tmiiG~dv~h~~~~~~~~pSi~avVaS~d~-~~~~~y 664 (895)
. .+...+++.||++|||+||||+||.++. | ..++||||+||+|++. .++++++++++. ....+|
T Consensus 438 tl~k~~~~ia~NIaLkINaKLGG~pW~L~~------P---~~~tmiIGiDVsH~~~-----~~~~~~aav~~~dg~~~~~ 503 (685)
T 3ho1_A 438 PLREEERHRWENALLGLLAKAGLQVVALSG------A---YPAELAVGFDAGGRES-----FRFGGAACAVGGDGGHLLW 503 (685)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHTCCCCEECS------C---CSCSEEEEEEEEETTE-----EEEEEEEEEECC--CCCEE
T ss_pred CCCCCCHHHHHHHHHHHHHHHCCEEEEECC------C---CCCEEEEEEEEECCCC-----CCCCEEEEEEECCCCEEEE
T ss_conf 225640719999999998873983578568------9---9986999999973898-----9612399999788887776
Q ss_pred EEEEEECCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCC-CCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 78999606862000223455568991899999999999871799994699982888-90148999999999999999983
Q 002661 665 RAAVRTQSSKVEMIDALYKPIANGNDDGIIRELLLDFYRTSKQRKPKQIIIFRDGV-SESQFNQVLNIELEQIIKAYQHL 743 (895)
Q Consensus 665 ~~~~~~q~~~~e~i~~~~~~~~~~~~~~~~~~~l~~f~~~~~~~~P~~IiiyRDGv-segq~~~v~~~Ei~~i~~a~~~~ 743 (895)
. .++.|....+.++++ ..++.++|..|++. ++.+|+||||||||| +|+|+. +|++||.++
T Consensus 504 ~-~~~~Q~~e~l~~~~L---------~~~l~eaL~~Y~k~-ng~lP~RIIIyRDGV~se~E~~--------~I~eAl~~~ 564 (685)
T 3ho1_A 504 T-LPEAQAGERIPQEVV---------WDLLEETLWAFRRK-AGRLPSRVLLLRNGRVPQDEFA--------LALEALARE 564 (685)
T ss_dssp E-CCCCCCSCCCHHHHH---------HHHHHHHHHHHHHH-HSSCCSEEEEEECSSSCSGGGH--------HHHHHHHHT
T ss_pred E-EEECCCCCEECHHHH---------HHHHHHHHHHHHHH-HCCCCCEEEEEECCCCCHHHHH--------HHHHHHHHC
T ss_conf 7-887267858649999---------99999999999998-3899848999958989989999--------999999861
Q ss_pred CCCCCCCEEEEEEEECCCCEEECCCCCCCCCCEEEEECCCCCCCCCCEEEEEC-CCCCCCCCCCEEEEEECCCCCCHHHH
Q ss_conf 79999719999995313200103899999999006505444687222796202-58643336873699936999995799
Q 002661 744 GEADIPKFTVIVAQKNHHTKLFQASGPENVPPGTVVDTRIVHPRNYDFYMCAH-AGMIGTSRPAHYHVLLDEIGFSPDDL 822 (895)
Q Consensus 744 ~~~~~p~it~Ivv~Krh~~Rff~~~~~~N~~pGTvVD~~it~p~~~dFyL~sh-~~~qGTarPt~Y~Vl~d~~~~~~d~l 822 (895)
.+++|||+|+||||+|||+.+ .++.+||+++. ..++|||.+| .+.|||++|+||+ +|++++++|+|
T Consensus 565 ----~~~~t~IvVqKRh~tRfF~~n--~pp~~Gt~v~~-----e~d~flL~s~gsv~qGT~rPthy~--~D~~~~s~D~L 631 (685)
T 3ho1_A 565 ----GIAYDLVSVRKSGGGRVYPVQ--GRLADGLYVPL-----EDKTFLLLTVHRDFRGTPRPLKLV--HEAGDTPLEAL 631 (685)
T ss_dssp ----TCEEEEEEEESSCCCCEEESS--SCCCSSEEEEC-----STTEEEEECCCCCSSSCCCCEEEE--EEEECSCHHHH
T ss_pred ----CCCEEEEEEEECCCCEEECCC--CCCCCEEEEEC-----CCCEEEEEECCCCCCCCCCEEEEE--ECCCCCCHHHH
T ss_conf ----998799999916871374689--89987599807-----897899996688876678619999--89899899999
Q ss_pred HHHHHHHHCCCCCCC-CCCCCCCHHHHHHHHHHHHCC
Q ss_conf 999999620124336-874345515789999986201
Q 002661 823 QNLIHSLSYVYQRST-TAISIVAPICYAHLAASQMGQ 858 (895)
Q Consensus 823 q~lt~~Lc~~y~~~~-~~vsiP~P~~yA~~~a~r~~~ 858 (895)
|++||+|||+|+||+ +++|+|+||||||++|++-..
T Consensus 632 Q~ltY~Lchmy~nst~~svsvPAP~~YAhklAk~~~r 668 (685)
T 3ho1_A 632 AHQIFHLTRLYPASGFAFPRLPAPLHLADRLVKEVGR 668 (685)
T ss_dssp HHHHHHGGGCCSSCSSSCCSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 9999997775116899999867578999999999987
No 7
>2yha_A Post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; HET: GOL; 1.85A {Neurospora crassa} PDB: 2xdy_A
Probab=1.00 E-value=1 Score=636.08 Aligned_cols=359 Identities=28% Similarity=0.442 Sum_probs=299.3
Q ss_pred CCCCEEEC-CCCCCEEEEEEECCC---CCHHHHHHHHHHHHHCCCEECCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 47840211-334454899995897---64899999999984203702048813442353113799146899999999974
Q 002661 471 FNNKRFLE-ATRIDRWIVVNFSAR---CDTSHISRELINCGRNKGIHIERPFTLIEEDQQTRRGNPVVRVERMFELITEK 546 (895)
Q Consensus 471 ~~~~~f~~-p~~l~~W~ii~~~~~---~~~~~f~~~L~~~~~~~G~~i~~p~~i~~~~~~~~~~~~~~~le~~~~~~~~~ 546 (895)
+++++|++ ++++++|+++++... ..++.|++.|.+.|+.+||.+..|........ ..+.+..+ .++.+...
T Consensus 2 ~~~~~f~~p~~~l~~W~vv~~~~~~~~~~~~~f~~~l~~~~~~~G~~i~~p~~~~~~~~---~~~~~~~~--~~~~~~~~ 76 (388)
T 2yha_A 2 AMAVKVARPCRKIEKWTYLELKGSKANEGVPQAMTAFAEFLNRTGIPINPRFSPGMSMS---VPGSEKEF--FAKVKELM 76 (388)
T ss_dssp ---CCCSBCCSCBCSEEEEEEECSSCCCCHHHHHHHHHHHHHHTTCCBCSCCCCCEEEE---CCSSHHHH--HHHHHHHH
T ss_pred CCCCEECCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEECCCCCCCEECC---CCCHHHHH--HHHHHHCC
T ss_conf 98888516997277899999027778799999999999999876977479987541037---78638785--89875045
Q ss_pred CCCCCEEEEEECCCCCCCCCHHHHHHHHHCCCCCEEEEEECCC---CCHH--HHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 9999839999917999986558899986215694114540365---6756--8999999988505984322343234667
Q 002661 547 LPGPPQFILCVLPERKNSDIYGPWKKKSLSDFGIATQCISPTK---INDQ--YLTNVLLKINSKLGGINSLLALEQSSLI 621 (895)
Q Consensus 547 ~~~~~~lvlvIlp~~~~~~~Y~~iK~~~~~~~gV~TQci~~~k---~~~q--~~~Ni~lKiN~KlGG~n~~~~~~~~~~~ 621 (895)
..++|++||+|+ ++.+.|+.||+++|+++||+||||+.++ .++| ++.||++|||+||||+||.++. .+
T Consensus 77 --~~~~lvl~ilp~-~~~~~Y~~iK~~~~~~~GI~TQcv~~~~~~k~~~q~s~~~NI~lKiN~KlGG~n~~l~~----~~ 149 (388)
T 2yha_A 77 --SSHQFVVVLLPR-KDVAIYNMVKRAADITFGVHTVCCVAEKFLSTKGQLGYFANVGLKVNLKFGGTNHNIKT----PI 149 (388)
T ss_dssp --HTCSEEEEEESS-SCHHHHHHHHHHHHTTTCCEEEEEEHHHHHCSTTHHHHHHHHHHHHHHHTTCBCCCCCS----CC
T ss_pred --CCCEEEEEEECC-CCHHHHHHHHHHHHCCCCCCEEEEEHHHHCCCCCHHHHHHHHHHHHHHHHCCCCEECCC----CC
T ss_conf --898299999789-98348999999871057975089834560576748999999999999971893312256----65
Q ss_pred CCCCCCCEEEEEEEEECCC---CC--CCCCCEEEEEEEECCCCCCCEEEEEEEECC-CCCEECCCCCCCCCCCCHHHHHH
Q ss_conf 8745899299999831399---99--999883889995047886431578999606-86200022345556899189999
Q 002661 622 PLIKDTPTMILGMDVSHGS---PG--RSDIPSVAAVVGSQSWPLISRYRAAVRTQS-SKVEMIDALYKPIANGNDDGIIR 695 (895)
Q Consensus 622 p~~~~~~tmiiG~dv~h~~---~~--~~~~pSi~avVaS~d~~~~~~y~~~~~~q~-~~~e~i~~~~~~~~~~~~~~~~~ 695 (895)
|++.+.+|||||+||+||+ +| ....||++|+|||+|. ..++|.+.+++|. +++|++++| ++|++
T Consensus 150 ~~~~~~~tmiiG~DV~H~~~~~~g~~~~~~pSiaavVaS~d~-~~~~y~~~~~~Q~~~~~E~i~~l---------~~~~~ 219 (388)
T 2yha_A 150 PLLAKGKTMVVGYDVTHPTNLAAGQSPASAPSIVGLVSTIDQ-HLGQWPAMVWNNPHGQESMTEQF---------TDKFK 219 (388)
T ss_dssp HHHHTSCEEEEEEEEECSCCCSSSSCCTTSCEEEEEEECCST-TCCCCCEEEEEETTTHHHHHHHH---------HHHHH
T ss_pred CCCCCCCEEEEEEEEECCCCCCCCCCCCCCCEEEEEEEECCC-CCCEEEEEEEECCCCCCCHHHHH---------HHHHH
T ss_conf 545778779998777515656777767899879998777599-97779789998688862579999---------99999
Q ss_pred HHHHHHHH--HHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCC-CCCEEEEEEEECCCCEEECCCCCCC
Q ss_conf 99999998--71799994699982888901489999999999999999837999-9719999995313200103899999
Q 002661 696 ELLLDFYR--TSKQRKPKQIIIFRDGVSESQFNQVLNIELEQIIKAYQHLGEAD-IPKFTVIVAQKNHHTKLFQASGPEN 772 (895)
Q Consensus 696 ~~l~~f~~--~~~~~~P~~IiiyRDGvsegq~~~v~~~Ei~~i~~a~~~~~~~~-~p~it~Ivv~Krh~~Rff~~~~~~N 772 (895)
++|..|++ .+++.+|++|||||||||||||.+|+++|+++|++||.++..+| +|+||||||+||
T Consensus 220 ~~L~~~~~~~~~~~~~P~rIiiyRDGVseGQf~~V~~~El~~i~~a~~~~~~~~~~P~it~Ivv~Kr------------- 286 (388)
T 2yha_A 220 TRLELWRSNPANNRSLPENILIFRDGVSEGQFQMVIKDELPLVRAACKLVYPAGKLPRITLIVSVKG------------- 286 (388)
T ss_dssp HHHHHHHHSGGGTTCCCSEEEEEEESCCGGGHHHHHHHTHHHHHHHHHHHSCTTCCCEEEEEEEC---------------
T ss_pred HHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCC-------------
T ss_conf 9999998756543789752899946867257999999999999999998514467986799996466-------------
Q ss_pred CCCEEEEECCCCCCCCCCEEEEECCCCCCCCCCCEEEEEECCC------CCCHHHHHHHHHHHHCCCCCCCCCCCCCCHH
Q ss_conf 9990065054446872227962025864333687369993699------9995799999999620124336874345515
Q 002661 773 VPPGTVVDTRIVHPRNYDFYMCAHAGMIGTSRPAHYHVLLDEI------GFSPDDLQNLIHSLSYVYQRSTTAISIVAPI 846 (895)
Q Consensus 773 ~~pGTvVD~~it~p~~~dFyL~sh~~~qGTarPt~Y~Vl~d~~------~~~~d~lq~lt~~Lc~~y~~~~~~vsiP~P~ 846 (895)
+|||||+||+||+ ++++|+||+|||+|||+|+|||++||+|+|+
T Consensus 287 ------------------------------arPthY~Vl~De~f~~~~~~~~~d~lq~lty~Lc~~y~r~t~sVsipaP~ 336 (388)
T 2yha_A 287 ------------------------------SGSAHYTVLVDEIFRADYGNKAADTLEQLTHDMCYLFGRATKAVSICPPA 336 (388)
T ss_dssp ----------------------------------CEEEEEESSHHHHHGGGHHHHHHHHHHHHHHC----------CHHH
T ss_pred ------------------------------CCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHH
T ss_conf ------------------------------68826999827864334579999999999999977753325887757589
Q ss_pred HHHHHHHHHHCCCCC--CCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCEEEC
Q ss_conf 789999986201231--34789976667899--99998822221498980329
Q 002661 847 CYAHLAASQMGQFIK--FEDSSDTSITSAGS--VPVPELPRLHKNVESSMFFC 895 (895)
Q Consensus 847 ~yA~~~a~r~~~~l~--~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~m~~~ 895 (895)
||||++|+|||.|+. +++ ++++|+++++ .....+.++|++++++||||
T Consensus 337 yYAh~~a~R~r~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~mfyl 388 (388)
T 2yha_A 337 YYADLVCDRARIHQKELFDA-LDENDSVKTDDFARWGNSGAVHPNLRNSMYYI 388 (388)
T ss_dssp HHHHHHHHHHHHHCHHHHHH-HTTCSCCCHHHHHHHHHHTCCCGGGTTSCTTC
T ss_pred HHHHHHHHHHHHHHHHHCCC-CCCCCCCCCCCCCCCCCCCCCCHHHCCCCEEC
T ss_conf 99999999999985541267-77666667776433223466597763784369
No 8
>2w42_A PIWI, putative uncharacterized protein; RNAI, RISC, argonaute, PIWI domain, protein/DNA complex; 1.90A {Archaeoglobus fulgidus} PDB: 1ytu_A 2bgg_A 1w9h_A
Probab=1.00 E-value=1 Score=430.98 Aligned_cols=362 Identities=14% Similarity=0.102 Sum_probs=250.7
Q ss_pred EECCCCEECC--CCCCC------CCCCCCCCCCCCEEECCCCC--CEEEEEEECCCCCHHHHHHHHHHHHH---CCCEEC
Q ss_conf 7159814309--84235------89897433478402113344--54899995897648999999999842---037020
Q 002661 448 ILEIPKLKVG--KSEDC------IPRNGRWNFNNKRFLEATRI--DRWIVVNFSARCDTSHISRELINCGR---NKGIHI 514 (895)
Q Consensus 448 vL~~P~I~yg--~~~~~------~~~~g~W~~~~~~f~~p~~l--~~W~ii~~~~~~~~~~f~~~L~~~~~---~~G~~i 514 (895)
-|..|.+.|+ +++.+ ++..| +.+...++.... .+|++++...... |++.|.+... ..++.+
T Consensus 5 ~~~ep~~~~~~~~~~~~~~~~~~~~~~g---l~~~gpy~~~~~~~~~w~vI~~~~~~~---~l~~l~~~~~~~~g~~f~~ 78 (427)
T 2w42_A 5 KIVENGLTYRIGNGASVPISNTGELIKG---LRNYGPYEVPSLKYNQIALIHNNQFSS---LINQLKSQISSKIDEVWHI 78 (427)
T ss_dssp ------CEEECGGGCEEESSCHHHHHHH---HHHHCCSBCCCCSSSEEEEEESCTTCH---HHHHHHHHHHHHHHHTTCC
T ss_pred CCCCCCCEEECCCCCCCCCCCCCCHHHH---HHHCCCCCCCCCCCCEEEEEECCCCHH---HHHHHHHHHHHCCCCCEEE
T ss_conf 4478753441247973444456787899---986699746778898899997733089---9999987533128984053
Q ss_pred CCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEC--------CCCCCCCCHHHHHHHHHCCCCCEEEEEE
Q ss_conf 48813442353113799146899999999974999983999991--------7999986558899986215694114540
Q 002661 515 ERPFTLIEEDQQTRRGNPVVRVERMFELITEKLPGPPQFILCVL--------PERKNSDIYGPWKKKSLSDFGIATQCIS 586 (895)
Q Consensus 515 ~~p~~i~~~~~~~~~~~~~~~le~~~~~~~~~~~~~~~lvlvIl--------p~~~~~~~Y~~iK~~~~~~~gV~TQci~ 586 (895)
..+... ...+. +.++ +.+++ ++++++||+ |+ ++ +.|..+|+ ++.+.|||||||.
T Consensus 79 ~~~~~~---~~~y~-----~~i~---~~l~~----~~~lvlvilp~~~~~~~~~-~~-~~~y~~K~-~~~~~gvptQ~I~ 140 (427)
T 2w42_A 79 HNINIS---EFIYD-----SPHF---DSIKS----QVDNAIDTGVDGIMLVLPE-YN-TPLYYKLK-SYLINSIPSQFMR 140 (427)
T ss_dssp CSCEEE---EEECS-----SSSH---HHHHH----HHHHHHHHCCSEEEEEESS-CC-HHHHHHHH-HHHHTTSCEEEEE
T ss_pred CCCCCC---HHHHH-----HHHH---HHHCC----CCCEEEEEEECCCCCCCCC-CC-CCHHHHHH-HHHCCCCCCEEEE
T ss_conf 577678---07899-----9999---97437----9979999997601045898-77-50599999-9867996758987
Q ss_pred CCCC---CHH-HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCEEEEEEEECCCCCCC
Q ss_conf 3656---756-899999998850598432234323466787458992999998313999999988388999504788643
Q 002661 587 PTKI---NDQ-YLTNVLLKINSKLGGINSLLALEQSSLIPLIKDTPTMILGMDVSHGSPGRSDIPSVAAVVGSQSWPLIS 662 (895)
Q Consensus 587 ~~k~---~~q-~~~Ni~lKiN~KlGG~n~~~~~~~~~~~p~~~~~~tmiiG~dv~h~~~~~~~~pSi~avVaS~d~~~~~ 662 (895)
.+++ +.+ .+.||++|||+||||+||.++.. .| ..++||||+||+|++.+ +++|++.+.|. +..
T Consensus 141 ~~tl~~~~~~~~~~nIalqi~~KlGG~pW~l~~~----~~---~~~~miiGidv~h~~~~-----~v~g~a~v~~~-~g~ 207 (427)
T 2w42_A 141 YDILSNRNLTFYVDNLLVQFVSKLGGKPWILNVD----PE---KGSDIIIGTGATRIDNV-----NLFCFAMVFKK-DGT 207 (427)
T ss_dssp GGGCCTTTHHHHHHHHHHHHHHHTTCBCCEECCC----TT---SSCSEEEEEEEEESSSS-----EEEEEEEEECT-TSC
T ss_pred HHHCCCCCCHHHHHHHHHHHHHHHCCCCEECCCC----CC---CCCEEEEEEEEEECCCC-----CEEEEEEEECC-CCC
T ss_conf 3354556505699999999978738966064567----89---89869997899876999-----57999999838-997
Q ss_pred EEEEEEEECCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCC--EEEEEECCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 1578999606862000223455568991899999999999871799994--69998288890148999999999999999
Q 002661 663 RYRAAVRTQSSKVEMIDALYKPIANGNDDGIIRELLLDFYRTSKQRKPK--QIIIFRDGVSESQFNQVLNIELEQIIKAY 740 (895)
Q Consensus 663 ~y~~~~~~q~~~~e~i~~~~~~~~~~~~~~~~~~~l~~f~~~~~~~~P~--~IiiyRDGvsegq~~~v~~~Ei~~i~~a~ 740 (895)
.+.+.+..|.+++|+++++ ..++.++|..|++..++.+|+ ||||| ||+..+.++|+++|++||
T Consensus 208 ~~~~~~~~~~~~~E~~~~l---------~~~l~~aL~~y~~~~~~~~P~~~rIii~------gq~~~v~~~Ei~~i~~a~ 272 (427)
T 2w42_A 208 MLWNEISPIVTSSEYLTYL---------KSTIKKVVYGFKKSNPDWDVEKLTLHVS------GKRPKMKDGETKILKETV 272 (427)
T ss_dssp EEEEEECCCEEGGGHHHHH---------HHHHHHHHHHHHHHCTTCCCSEEEEEEE------SSCCSCHHHHHHHHHHHH
T ss_pred EEEEEEEECCCHHHHHHHH---------HHHHHHHHHHHHHHHCCCCCCCEEEEEE------EECCCCCHHHHHHHHHHH
T ss_conf 8999888427706799999---------9999999999998742789982599999------214111699999999999
Q ss_pred HHHCC----CCCCCEEEEEEEECCC-CEEECCCCCCCCCCEEEEECCCCCCCCCCEEEEECC------CCCCCCCCCEEE
Q ss_conf 98379----9997199999953132-001038999999990065054446872227962025------864333687369
Q 002661 741 QHLGE----ADIPKFTVIVAQKNHH-TKLFQASGPENVPPGTVVDTRIVHPRNYDFYMCAHA------GMIGTSRPAHYH 809 (895)
Q Consensus 741 ~~~~~----~~~p~it~Ivv~Krh~-~Rff~~~~~~N~~pGTvVD~~it~p~~~dFyL~sh~------~~qGTarPt~Y~ 809 (895)
.+++. +++|+++||+|+|||| +|||..+..+||+||||||.+ .+++++|++.+|. ..+ +++|+||+
T Consensus 273 ~~~~~~~~~~~~~~l~~IvV~Kr~~~~r~f~~~~~~nP~~GTvVd~~--~~~~l~~~~g~q~~~~~~~~~~-~~~Pt~y~ 349 (427)
T 2w42_A 273 EELKKQEMVSRDVKYAILHLNETHPFWVMGDPNNRFHPYEGTKVKLS--SKRYLLTLLQPYLKRNGLEMVT-PIKPLSVE 349 (427)
T ss_dssp HHHHHTTSSCTTCEEEEEEEEECCCEEEEC--------CCSEEEESS--SSEEEEEEEC---------CEE-EEEEEEEE
T ss_pred HHHCCCCCCCCCCCEEEEEEECCCCCEEEECCCCCCCCCCCEEEECC--CCEEEEEEEEEECCCCCCCCCC-CCCCEEEE
T ss_conf 87154434578887799999816665466547888998996499758--9808999974523656656535-88987999
Q ss_pred EEEC----CCCC-CHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCC
Q ss_conf 9936----9999-95799999999620124336874345515789999986201231347
Q 002661 810 VLLD----EIGF-SPDDLQNLIHSLSYVYQRSTTAISIVAPICYAHLAASQMGQFIKFED 864 (895)
Q Consensus 810 Vl~d----~~~~-~~d~lq~lt~~Lc~~y~~~~~~vsiP~P~~yA~~~a~r~~~~l~~~~ 864 (895)
|++| ++++ ++|+||++||+|||+|+|++.++|+||||||||++|++++....++.
T Consensus 350 vi~d~~~~~~~~~~~d~lq~lty~L~~~nw~~t~~v~vPap~~YAhklA~l~~~~~~~~~ 409 (427)
T 2w42_A 350 IVSDNWTSEEYYHNVHEILDEIYYLSKMNWRGFRSRNLPVTVNYPKLVAGIIANVNRYGG 409 (427)
T ss_dssp EEEECCCTTTHHHHHHHHHHHHHHHHTCCTTSSSCCSSCHHHHHHHHHHHHHHHHHHTTC
T ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf 996687684459899999999998547656888889837650769999999865642588
No 9
>1vyn_A Argonaute2; nucleic acid binding, RNA interference; NMR {Drosophila melanogaster} SCOP: b.34.14.1
Probab=1.00 E-value=1 Score=203.49 Aligned_cols=131 Identities=22% Similarity=0.373 Sum_probs=114.1
Q ss_pred ECCCCHHHHHHHHCCC---CCCCCC--CHHHHHHHCCCCEEEECC------CCCEEEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 2465088999972488---997600--189999650551999301------79359994068888886620164578889
Q 002661 264 LKPGPVIDFLIANQNV---REPRFI--DWTKAKKMLRNLRVKPRH------RNMEFKIVGLSEKPCNQQFFPMKVKSTEG 332 (895)
Q Consensus 264 ~~~~~l~d~i~~~~~~---~~~~~~--~~~~i~~~Lkgl~V~~~~------~~r~~~I~gi~~~~a~~~~F~~~~~~~~g 332 (895)
++++||+||+.+..+. .....+ ++.+++++|+|++|.++| ++|+|+|.||++.++++.+|+.+
T Consensus 2 ~~~~~vidfl~~~~~~~~~~~~~~~~~~r~~~~k~LkGl~V~~~~~~~~~~~~r~yrI~~i~~~~a~~~~F~~~------ 75 (143)
T 1vyn_A 2 AMAMPMIEYLERFSLKAKINNTTNLDYSRRFLEPFLRGINVVYTPPQSFQSAPRVYRVNGLSRAPASSETFEHD------ 75 (143)
T ss_dssp --CEEHHHHHHHHTTSSCCSSSSCHHHHHHHSHHHHTTEEEEECCCTTSCCCCEEEEEEEEEEEETTTCEEESS------
T ss_pred CCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEEEECCCCCCCCEEEECC------
T ss_conf 88634999999986216666557566899999997498399995687766787359981056899521289749------
Q ss_pred CCCCCCEEEEHHHHHHHHCCCCCCCCCCCCEEECCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCC
Q ss_conf 888974165398999883494113489975796589998621134532763664102349999999999995079
Q 002661 333 TNEGETLEITVYDYFTQHCRIELTYSAYLPCLDVGKPKRPNYLPLELCSLVSLQRYTKALSSMQRASLVEKSRQK 407 (895)
Q Consensus 333 ~~~~~g~~iSv~dYf~~~Y~i~L~~~p~lP~i~vg~~~~~~~lP~Elc~i~~~Q~~~~~l~~~q~~~lik~~~~~ 407 (895)
|.++||+|||+++ |++|+| |+||||++|++.+++|||||||.|++||+++++|++.|+++||++++.+
T Consensus 76 -----g~~isv~~Yf~~~-~~~l~~-p~lP~l~~g~~~k~~ylP~ElC~i~~gQ~~~~kl~~~q~~~mik~a~~~ 143 (143)
T 1vyn_A 76 -----GKKVTIASYFHSR-NYPLKF-PQLHCLNVGSSIKSILLPIELCSIEEGQALNRKDGATQVANMIKYAATS 143 (143)
T ss_dssp -----SCEEEHHHHHHHT-TCCCSS-TTSEEEEEECSSSEEEEEGGGEEECC-----------------------
T ss_pred -----CCEEEHHHHHHHC-CCCCCC-CCCCEEEECCCCCCEEECCEEEECCCCCCCCCCCCHHHHHHHHHHHHCC
T ss_conf -----9779899999872-997789-9987587437889758511858805895224318989999999998359
No 10
>1r6z_P Chimera of maltose-binding periplasmic protein AN argonaute 2; deviant OB fold, RNAI, gene regulation; HET: MAL; 2.80A {Escherichia coli} SCOP: b.34.14.1 c.94.1.1
Probab=1.00 E-value=1 Score=195.54 Aligned_cols=124 Identities=24% Similarity=0.433 Sum_probs=108.3
Q ss_pred ECCEEEEECCCCHHHHHHHHC---CCCCCCCCCHH--HHHHHCCCCEEEECC------CCCEEEEEECCCCCCCCCCCCC
Q ss_conf 010334624650889999724---88997600189--999650551999301------7935999406888888662016
Q 002661 257 DVSTTMILKPGPVIDFLIANQ---NVREPRFIDWT--KAKKMLRNLRVKPRH------RNMEFKIVGLSEKPCNQQFFPM 325 (895)
Q Consensus 257 D~~~~~F~~~~~l~d~i~~~~---~~~~~~~~~~~--~i~~~Lkgl~V~~~~------~~r~~~I~gi~~~~a~~~~F~~ 325 (895)
+...+.|++++|++|++.++. +.+++..+++. ++++.|+||+|+++| .+|.|+|.||+..+|.+.+|+.
T Consensus 375 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~i~~~~~~~~~~~~f~~ 454 (509)
T 1r6z_P 375 DISHKSFPISMPMIEYLERFSLKAKINNTTNLDYSRRFLEPFLRGINVVYTPPQSFQSAPRVYRVNGLSRAPASSETFEH 454 (509)
T ss_dssp CSSCCCSSCEEEHHHHHHHHTTCSCCCTTCCGGGGHHHHHHHHTTCEEEECCCGGGCCCCEEEECCEEEEEETTTCEEEE
T ss_pred HHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCEEEEEECCCCCHHHCEECC
T ss_conf 64544007772099999987630366786554156899999707817999668876678875998637779754268536
Q ss_pred CCCCCCCCCCCCCEEEEHHHHHHHHCCCCCCCCCCCCEEECCCCCCCCCCCCCCEEECCCCCCCCCCC
Q ss_conf 45788898889741653989998834941134899757965899986211345327636641023499
Q 002661 326 KVKSTEGTNEGETLEITVYDYFTQHCRIELTYSAYLPCLDVGKPKRPNYLPLELCSLVSLQRYTKALS 393 (895)
Q Consensus 326 ~~~~~~g~~~~~g~~iSv~dYf~~~Y~i~L~~~p~lP~i~vg~~~~~~~lP~Elc~i~~~Q~~~~~l~ 393 (895)
+ ++++||+|||+ +||++|+| |+||||++|++++++|||||||.|+++|||+++|+
T Consensus 455 ~-----------~~~~sv~~yf~-~~~~~l~~-p~lp~v~~~~~~~~~~~P~e~~~i~~~q~~~~~~~ 509 (509)
T 1r6z_P 455 D-----------GKKVTIASYFH-SRNYPLKF-PQLHCLNVGSSIKSILLPIELCSIEEGQALNRKDG 509 (509)
T ss_dssp T-----------TEEEEHHHHHH-HTTCCCSC-TTSEEEECSCTTSCCEECGGGEEEEC---------
T ss_pred C-----------CEEEEHHHHHH-HCCCCCCC-CCCCEEECCCCCCCCEECCEEEEECCCCCCCCCCC
T ss_conf 9-----------91888999999-71975658-99986934888788561403268648841145579
Done!