Query 002662
Match_columns 895
No_of_seqs 339 out of 1069
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 04:34:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002662.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002662hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1196 Smc Chromosome segrega 99.9 2.8E-20 6.2E-25 236.3 43.0 439 148-593 557-1076(1163)
2 KOG0933 Structural maintenance 99.8 3.5E-18 7.6E-23 201.9 35.3 364 182-570 605-1018(1174)
3 TIGR02169 SMC_prok_A chromosom 99.8 4.4E-17 9.5E-22 206.7 44.7 62 533-594 1019-1085(1164)
4 KOG0161 Myosin class II heavy 99.8 1.1E-16 2.4E-21 204.5 48.0 288 291-578 1240-1617(1930)
5 KOG0996 Structural maintenance 99.8 1.6E-15 3.5E-20 182.2 38.4 177 179-363 697-896 (1293)
6 PF01576 Myosin_tail_1: Myosin 99.7 2.1E-19 4.6E-24 221.1 0.0 281 291-571 182-546 (859)
7 KOG0018 Structural maintenance 99.7 8.5E-14 1.8E-18 166.8 39.0 115 148-263 545-673 (1141)
8 KOG0161 Myosin class II heavy 99.6 1.7E-12 3.7E-17 166.8 43.5 326 245-574 1522-1908(1930)
9 PF00038 Filament: Intermediat 99.6 5.2E-11 1.1E-15 131.4 40.0 270 241-516 17-312 (312)
10 TIGR02168 SMC_prok_B chromosom 99.5 1.8E-10 4E-15 146.4 47.6 60 535-594 1031-1100(1179)
11 KOG0964 Structural maintenance 99.5 1.3E-10 2.9E-15 138.2 39.0 72 159-232 576-656 (1200)
12 KOG0977 Nuclear envelope prote 99.5 2.2E-11 4.8E-16 140.9 30.8 267 240-513 54-389 (546)
13 PF00498 FHA: FHA domain; Int 99.5 6.8E-14 1.5E-18 120.0 7.4 67 105-185 1-68 (68)
14 PF01576 Myosin_tail_1: Myosin 99.3 1.9E-13 4.2E-18 168.8 -0.8 315 244-561 463-838 (859)
15 cd00060 FHA Forkhead associate 99.3 4.8E-11 1E-15 108.8 12.1 91 79-186 1-93 (102)
16 TIGR03354 VI_FHA type VI secre 99.3 2.2E-11 4.8E-16 138.7 11.3 77 95-186 16-96 (396)
17 KOG1882 Transcriptional regula 99.2 1.5E-11 3.3E-16 127.3 6.8 130 52-187 147-278 (293)
18 TIGR02168 SMC_prok_B chromosom 99.2 5.9E-07 1.3E-11 114.7 48.0 32 244-275 672-703 (1179)
19 TIGR02169 SMC_prok_A chromosom 99.2 1.5E-06 3.2E-11 111.4 51.5 11 159-169 109-119 (1164)
20 KOG0615 Serine/threonine prote 99.2 3.5E-11 7.5E-16 133.8 7.7 116 72-201 39-158 (475)
21 PLN02927 antheraxanthin epoxid 99.1 3.3E-10 7.2E-15 136.2 10.2 92 77-187 532-637 (668)
22 KOG0933 Structural maintenance 99.1 6.5E-06 1.4E-10 99.7 45.6 230 209-454 651-894 (1174)
23 PF07888 CALCOCO1: Calcium bin 99.0 0.00027 5.8E-09 83.1 55.3 28 245-272 139-166 (546)
24 COG1716 FOG: FHA domain [Signa 99.0 1E-09 2.3E-14 112.1 7.6 73 98-187 84-157 (191)
25 PRK02224 chromosome segregatio 99.0 1.5E-05 3.2E-10 100.1 45.9 22 539-560 533-554 (880)
26 PF00038 Filament: Intermediat 99.0 1.9E-05 4.1E-10 87.4 41.3 283 251-561 6-297 (312)
27 PRK02224 chromosome segregatio 98.9 4.2E-05 9.2E-10 96.0 49.1 11 580-590 778-788 (880)
28 PRK03918 chromosome segregatio 98.9 2.1E-05 4.5E-10 98.6 46.3 78 426-503 621-703 (880)
29 COG1196 Smc Chromosome segrega 98.9 2.8E-05 6.1E-10 100.4 48.0 80 283-363 690-769 (1163)
30 COG3456 Predicted component of 98.9 1.3E-09 2.7E-14 121.9 7.0 73 98-185 21-96 (430)
31 smart00240 FHA Forkhead associ 98.9 1.9E-09 4.1E-14 87.4 4.9 50 105-167 1-52 (52)
32 KOG0612 Rho-associated, coiled 98.9 8.1E-05 1.8E-09 92.2 45.7 69 293-361 491-559 (1317)
33 KOG0971 Microtubule-associated 98.9 3.9E-05 8.4E-10 92.0 40.9 73 291-363 271-343 (1243)
34 TIGR00606 rad50 rad50. This fa 98.8 0.00011 2.4E-09 96.2 49.0 45 523-567 1079-1125(1311)
35 PF07888 CALCOCO1: Calcium bin 98.8 0.00027 5.8E-09 83.1 46.2 33 243-275 144-176 (546)
36 PRK03918 chromosome segregatio 98.8 0.0002 4.3E-09 90.0 47.9 10 124-133 80-89 (880)
37 KOG1881 Anion exchanger adapto 98.8 1.9E-08 4.1E-13 117.9 9.8 89 103-200 177-266 (793)
38 KOG0250 DNA repair protein RAD 98.7 8.6E-05 1.9E-09 91.6 38.2 14 580-593 986-999 (1074)
39 TIGR00606 rad50 rad50. This fa 98.7 0.00038 8.2E-09 91.2 45.2 17 795-811 1262-1278(1311)
40 KOG0977 Nuclear envelope prote 98.7 0.00026 5.6E-09 83.1 39.0 146 248-398 41-193 (546)
41 KOG0976 Rho/Rac1-interacting s 98.6 0.00047 1E-08 82.0 40.3 67 427-493 245-311 (1265)
42 PF00261 Tropomyosin: Tropomyo 98.6 0.0001 2.2E-09 79.1 30.7 209 293-517 5-220 (237)
43 PF12128 DUF3584: Protein of u 98.6 0.0022 4.8E-08 83.5 48.6 45 318-362 601-645 (1201)
44 PF10174 Cast: RIM-binding pro 98.6 0.0021 4.5E-08 79.2 45.3 204 293-496 312-537 (775)
45 PF00261 Tropomyosin: Tropomyo 98.6 0.00014 3E-09 78.1 31.2 72 425-496 156-227 (237)
46 PRK04863 mukB cell division pr 98.5 0.0052 1.1E-07 80.8 50.5 39 466-504 558-596 (1486)
47 KOG1029 Endocytic adaptor prot 98.5 0.00076 1.7E-08 80.2 38.6 23 239-261 312-336 (1118)
48 TIGR03185 DNA_S_dndD DNA sulfu 98.5 0.00075 1.6E-08 82.4 40.7 159 430-593 390-561 (650)
49 KOG0964 Structural maintenance 98.5 0.0012 2.7E-08 80.4 39.7 93 278-371 227-326 (1200)
50 KOG0976 Rho/Rac1-interacting s 98.5 0.0088 1.9E-07 71.7 45.6 33 240-272 83-115 (1265)
51 KOG1029 Endocytic adaptor prot 98.5 0.0006 1.3E-08 81.1 35.3 26 355-380 381-406 (1118)
52 PRK01156 chromosome segregatio 98.5 0.0093 2E-07 75.5 48.9 6 799-804 866-871 (895)
53 KOG0996 Structural maintenance 98.5 0.0071 1.5E-07 75.5 45.4 31 242-272 267-297 (1293)
54 PRK04778 septation ring format 98.5 0.0088 1.9E-07 72.1 46.3 13 214-226 52-64 (569)
55 PF09755 DUF2046: Uncharacteri 98.5 0.0043 9.2E-08 68.4 39.2 110 240-368 25-136 (310)
56 PF12128 DUF3584: Protein of u 98.4 0.0071 1.5E-07 78.9 47.4 48 262-309 401-448 (1201)
57 KOG0994 Extracellular matrix g 98.4 0.0034 7.3E-08 77.5 40.3 102 424-525 1591-1692(1758)
58 PF09726 Macoilin: Transmembra 98.4 0.00043 9.3E-09 84.6 33.2 95 241-347 417-511 (697)
59 PF10174 Cast: RIM-binding pro 98.4 0.008 1.7E-07 74.2 44.0 70 292-361 339-408 (775)
60 KOG4674 Uncharacterized conser 98.4 0.012 2.7E-07 77.0 46.9 38 241-278 635-676 (1822)
61 PF15070 GOLGA2L5: Putative go 98.4 0.0084 1.8E-07 72.6 42.7 7 803-809 579-585 (617)
62 KOG4673 Transcription factor T 98.4 0.015 3.2E-07 69.0 46.2 47 506-552 716-766 (961)
63 PHA02562 46 endonuclease subun 98.4 0.0012 2.6E-08 78.8 35.7 15 580-594 465-479 (562)
64 PRK11637 AmiB activator; Provi 98.4 0.00066 1.4E-08 78.9 32.1 25 733-759 388-412 (428)
65 PRK11637 AmiB activator; Provi 98.4 0.00068 1.5E-08 78.8 32.2 23 435-457 195-217 (428)
66 PRK04863 mukB cell division pr 98.3 0.006 1.3E-07 80.2 43.8 42 406-447 438-479 (1486)
67 KOG4674 Uncharacterized conser 98.3 0.013 2.8E-07 76.8 45.2 275 242-520 738-1058(1822)
68 PRK04778 septation ring format 98.3 0.016 3.5E-07 69.9 43.7 15 547-561 452-466 (569)
69 PHA02562 46 endonuclease subun 98.3 0.001 2.2E-08 79.4 33.1 59 298-356 215-273 (562)
70 KOG0250 DNA repair protein RAD 98.3 0.0041 8.9E-08 77.4 38.3 21 423-443 364-384 (1074)
71 KOG0995 Centromere-associated 98.3 0.019 4.1E-07 67.5 43.2 107 240-348 218-325 (581)
72 KOG4673 Transcription factor T 98.3 0.021 4.5E-07 67.8 41.6 110 242-352 416-530 (961)
73 KOG0612 Rho-associated, coiled 98.3 0.0049 1.1E-07 77.1 38.1 47 524-570 726-776 (1317)
74 KOG0994 Extracellular matrix g 98.3 0.015 3.2E-07 72.2 41.1 69 436-504 1652-1720(1758)
75 KOG0971 Microtubule-associated 98.3 0.0047 1E-07 74.9 36.0 84 252-358 227-310 (1243)
76 COG1340 Uncharacterized archae 98.2 0.015 3.2E-07 63.9 38.6 86 241-338 5-90 (294)
77 KOG0963 Transcription factor/C 98.2 0.039 8.4E-07 65.5 41.5 110 423-532 234-357 (629)
78 KOG0995 Centromere-associated 98.1 0.041 8.8E-07 64.8 47.0 20 242-261 235-254 (581)
79 KOG4643 Uncharacterized coiled 98.1 0.08 1.7E-06 65.5 43.5 43 294-336 306-348 (1195)
80 PF05701 WEMBL: Weak chloropla 98.1 0.063 1.4E-06 64.3 47.1 70 420-489 284-353 (522)
81 COG4942 Membrane-bound metallo 98.0 0.024 5.3E-07 65.1 34.1 61 300-360 42-102 (420)
82 PRK10929 putative mechanosensi 97.9 0.12 2.7E-06 66.3 42.2 40 520-559 388-427 (1109)
83 PF05701 WEMBL: Weak chloropla 97.9 0.11 2.3E-06 62.3 47.8 13 214-226 7-19 (522)
84 PF05483 SCP-1: Synaptonemal c 97.9 0.11 2.4E-06 62.3 47.5 68 246-313 353-422 (786)
85 PF09726 Macoilin: Transmembra 97.9 0.016 3.5E-07 71.1 32.9 58 314-371 464-521 (697)
86 COG4942 Membrane-bound metallo 97.9 0.03 6.6E-07 64.3 32.6 63 296-358 45-107 (420)
87 PF09730 BicD: Microtubule-ass 97.9 0.14 3E-06 62.9 43.1 113 241-365 33-148 (717)
88 PF15070 GOLGA2L5: Putative go 97.9 0.14 2.9E-06 62.4 39.4 198 293-503 47-260 (617)
89 KOG4643 Uncharacterized coiled 97.8 0.2 4.3E-06 62.3 44.2 37 242-278 177-213 (1195)
90 PRK11281 hypothetical protein; 97.8 0.18 3.9E-06 65.1 40.6 52 293-344 125-176 (1113)
91 KOG0245 Kinesin-like protein [ 97.8 0.0027 5.9E-08 78.1 23.1 101 78-200 453-556 (1221)
92 KOG0963 Transcription factor/C 97.8 0.18 3.8E-06 60.2 37.3 53 315-367 180-232 (629)
93 PF05667 DUF812: Protein of un 97.8 0.15 3.3E-06 61.8 37.2 74 426-504 449-522 (594)
94 KOG0018 Structural maintenance 97.7 0.05 1.1E-06 67.8 32.7 69 437-505 401-469 (1141)
95 PF14662 CCDC155: Coiled-coil 97.7 0.089 1.9E-06 54.6 28.9 153 310-471 8-163 (193)
96 TIGR03185 DNA_S_dndD DNA sulfu 97.7 0.25 5.5E-06 60.6 38.6 76 435-510 388-465 (650)
97 PF06160 EzrA: Septation ring 97.7 0.26 5.7E-06 59.5 44.5 12 214-225 48-59 (560)
98 PF09755 DUF2046: Uncharacteri 97.7 0.15 3.3E-06 56.5 38.7 22 547-568 286-308 (310)
99 KOG1880 Nuclear inhibitor of p 97.6 5.6E-05 1.2E-09 81.7 4.8 79 97-187 32-111 (337)
100 COG5185 HEC1 Protein involved 97.6 0.27 5.8E-06 56.7 36.0 29 320-348 333-361 (622)
101 KOG0980 Actin-binding protein 97.6 0.27 5.9E-06 60.5 34.9 15 733-747 803-817 (980)
102 COG3883 Uncharacterized protei 97.6 0.16 3.4E-06 55.5 30.1 53 427-479 165-217 (265)
103 PF06160 EzrA: Septation ring 97.6 0.38 8.2E-06 58.2 43.0 45 460-504 345-389 (560)
104 KOG0980 Actin-binding protein 97.5 0.51 1.1E-05 58.2 38.3 49 280-329 350-398 (980)
105 KOG0978 E3 ubiquitin ligase in 97.5 0.52 1.1E-05 57.6 38.2 39 465-503 558-596 (698)
106 KOG0979 Structural maintenance 97.5 0.59 1.3E-05 58.5 36.5 54 538-591 908-969 (1072)
107 KOG0999 Microtubule-associated 97.4 0.46 1E-05 55.8 34.9 87 421-511 153-239 (772)
108 KOG4593 Mitotic checkpoint pro 97.4 0.56 1.2E-05 56.7 47.4 10 641-650 638-647 (716)
109 COG1340 Uncharacterized archae 97.4 0.33 7.1E-06 53.7 39.0 43 316-358 54-96 (294)
110 PF05667 DUF812: Protein of un 97.4 0.55 1.2E-05 57.0 35.1 14 548-561 576-589 (594)
111 COG1579 Zn-ribbon protein, pos 97.4 0.07 1.5E-06 57.5 24.5 66 298-363 12-77 (239)
112 COG5185 HEC1 Protein involved 97.4 0.46 1E-05 54.9 40.1 64 300-363 299-362 (622)
113 PF06705 SF-assemblin: SF-asse 97.3 0.35 7.6E-06 52.3 32.3 142 347-494 7-149 (247)
114 COG1579 Zn-ribbon protein, pos 97.3 0.17 3.7E-06 54.6 26.0 114 411-531 53-168 (239)
115 KOG0946 ER-Golgi vesicle-tethe 97.3 0.84 1.8E-05 56.0 33.7 79 425-503 807-885 (970)
116 KOG2129 Uncharacterized conser 97.2 0.6 1.3E-05 53.2 32.7 54 508-571 281-335 (552)
117 PF14915 CCDC144C: CCDC144C pr 97.2 0.54 1.2E-05 51.9 41.2 89 406-501 161-249 (305)
118 COG0419 SbcC ATPase involved i 97.2 1.4 3.1E-05 56.3 49.9 17 807-823 873-891 (908)
119 PF05483 SCP-1: Synaptonemal c 97.2 1 2.2E-05 54.4 47.8 49 315-363 347-395 (786)
120 COG4372 Uncharacterized protei 97.2 0.69 1.5E-05 52.4 33.7 43 292-334 119-161 (499)
121 PF15619 Lebercilin: Ciliary p 97.2 0.44 9.6E-06 50.0 27.5 69 426-497 120-188 (194)
122 PF09728 Taxilin: Myosin-like 97.1 0.72 1.6E-05 51.8 42.3 73 425-497 203-275 (309)
123 KOG0978 E3 ubiquitin ligase in 97.1 1.3 2.8E-05 54.3 43.4 23 436-458 515-537 (698)
124 PF09728 Taxilin: Myosin-like 97.1 0.82 1.8E-05 51.3 42.7 57 302-358 42-98 (309)
125 KOG0946 ER-Golgi vesicle-tethe 97.0 0.69 1.5E-05 56.6 30.1 37 298-334 680-716 (970)
126 KOG1003 Actin filament-coating 97.0 0.54 1.2E-05 49.0 27.6 115 243-358 5-129 (205)
127 KOG0999 Microtubule-associated 97.0 1.1 2.5E-05 52.7 41.6 74 240-325 6-79 (772)
128 TIGR02680 conserved hypothetic 97.0 1.6 3.4E-05 58.3 36.2 22 804-825 1281-1302(1353)
129 PF14915 CCDC144C: CCDC144C pr 97.0 0.81 1.8E-05 50.5 41.6 40 314-353 60-99 (305)
130 PF12718 Tropomyosin_1: Tropom 97.0 0.17 3.6E-06 50.6 21.2 32 426-457 96-127 (143)
131 PRK09039 hypothetical protein; 96.9 0.18 3.9E-06 57.3 22.9 41 321-361 113-153 (343)
132 PF13514 AAA_27: AAA domain 96.9 2.9 6.3E-05 54.7 45.3 37 469-505 892-928 (1111)
133 KOG2129 Uncharacterized conser 96.8 1.4 3.1E-05 50.3 31.0 20 242-261 50-69 (552)
134 PF05010 TACC: Transforming ac 96.7 1.1 2.3E-05 47.7 31.0 43 461-503 163-205 (207)
135 PF05622 HOOK: HOOK protein; 96.7 0.0004 8.6E-09 85.7 0.0 10 103-112 98-107 (713)
136 PF05622 HOOK: HOOK protein; 96.7 0.0004 8.7E-09 85.6 0.0 7 580-586 678-684 (713)
137 COG3883 Uncharacterized protei 96.7 1.3 2.8E-05 48.5 29.8 10 346-355 81-90 (265)
138 PF05557 MAD: Mitotic checkpoi 96.7 0.00041 8.9E-09 85.6 0.0 20 438-457 305-324 (722)
139 PF09730 BicD: Microtubule-ass 96.7 2.8 6E-05 52.0 42.4 48 306-353 65-112 (717)
140 TIGR01843 type_I_hlyD type I s 96.6 0.71 1.5E-05 52.9 25.5 25 411-435 247-271 (423)
141 KOG1003 Actin filament-coating 96.6 1.2 2.6E-05 46.4 28.5 22 466-487 165-186 (205)
142 KOG0962 DNA repair protein RAD 96.6 4.4 9.6E-05 52.7 44.0 31 537-567 1082-1112(1294)
143 PF06008 Laminin_I: Laminin Do 96.5 1.8 3.9E-05 47.3 34.1 28 240-267 15-42 (264)
144 PF05557 MAD: Mitotic checkpoi 96.5 0.015 3.3E-07 72.0 11.7 17 568-584 644-661 (722)
145 PF12718 Tropomyosin_1: Tropom 96.5 0.75 1.6E-05 46.0 21.3 47 294-340 19-65 (143)
146 PRK11281 hypothetical protein; 96.4 5.1 0.00011 52.2 34.4 7 553-559 445-451 (1113)
147 PF04849 HAP1_N: HAP1 N-termin 96.4 2.1 4.6E-05 47.8 29.3 35 292-326 86-120 (306)
148 PF05911 DUF869: Plant protein 96.3 3.5 7.6E-05 51.6 30.4 78 428-505 635-712 (769)
149 COG4372 Uncharacterized protei 96.3 2.7 6E-05 47.8 33.4 51 302-352 122-172 (499)
150 PF07111 HCR: Alpha helical co 96.3 4.4 9.6E-05 49.4 46.4 21 790-810 695-715 (739)
151 KOG0962 DNA repair protein RAD 96.2 6.5 0.00014 51.3 44.1 70 440-511 1010-1079(1294)
152 KOG1853 LIS1-interacting prote 96.2 2 4.4E-05 46.2 23.8 131 304-449 28-158 (333)
153 PF09787 Golgin_A5: Golgin sub 96.2 4.1 8.9E-05 48.9 36.0 19 295-313 154-172 (511)
154 PF15619 Lebercilin: Ciliary p 96.2 2 4.4E-05 45.1 27.3 95 423-517 67-166 (194)
155 PF04912 Dynamitin: Dynamitin 96.2 3.4 7.4E-05 47.8 28.0 22 240-261 92-113 (388)
156 KOG4302 Microtubule-associated 96.1 2.1 4.6E-05 52.3 26.5 34 465-498 232-265 (660)
157 PF06705 SF-assemblin: SF-asse 96.1 2.7 5.9E-05 45.5 35.2 76 318-393 35-111 (247)
158 PRK10929 putative mechanosensi 96.1 7.7 0.00017 50.6 35.1 6 573-578 436-441 (1109)
159 TIGR01005 eps_transp_fam exopo 96.1 0.8 1.7E-05 57.2 23.7 13 582-594 552-565 (754)
160 PRK10246 exonuclease subunit S 96.0 8.3 0.00018 50.3 46.4 10 580-589 946-955 (1047)
161 TIGR00634 recN DNA repair prot 95.9 3.3 7.1E-05 50.2 27.3 13 582-594 439-451 (563)
162 TIGR03007 pepcterm_ChnLen poly 95.9 1.5 3.3E-05 51.9 24.2 30 243-272 162-191 (498)
163 TIGR03007 pepcterm_ChnLen poly 95.9 0.45 9.7E-06 56.4 19.7 63 430-496 316-378 (498)
164 TIGR01005 eps_transp_fam exopo 95.9 1.4 3E-05 55.2 24.7 22 293-314 198-219 (754)
165 PF03148 Tektin: Tektin family 95.8 5.3 0.00011 46.3 38.5 43 403-445 251-293 (384)
166 PF05911 DUF869: Plant protein 95.8 8.2 0.00018 48.4 32.5 110 247-363 22-145 (769)
167 KOG4360 Uncharacterized coiled 95.8 4.1 9E-05 47.9 25.4 98 400-504 202-299 (596)
168 KOG0249 LAR-interacting protei 95.7 4.3 9.3E-05 49.5 26.0 29 244-272 30-58 (916)
169 TIGR02680 conserved hypothetic 95.7 12 0.00026 50.2 43.7 14 242-255 220-233 (1353)
170 PF05010 TACC: Transforming ac 95.7 3.6 7.8E-05 43.7 31.4 51 308-358 60-110 (207)
171 KOG1899 LAR transmembrane tyro 95.7 1.4 3.1E-05 52.6 21.5 45 227-271 96-140 (861)
172 COG4913 Uncharacterized protei 95.7 7.8 0.00017 47.5 30.6 41 240-280 614-654 (1104)
173 KOG4809 Rab6 GTPase-interactin 95.6 7 0.00015 46.4 35.2 34 315-348 371-404 (654)
174 TIGR01843 type_I_hlyD type I s 95.6 4.4 9.6E-05 46.4 25.5 19 242-260 81-99 (423)
175 KOG4809 Rab6 GTPase-interactin 95.5 7.5 0.00016 46.2 37.7 139 317-456 331-474 (654)
176 KOG0979 Structural maintenance 95.5 11 0.00024 47.9 30.3 21 156-176 53-73 (1072)
177 PF04849 HAP1_N: HAP1 N-termin 95.4 6.1 0.00013 44.3 28.9 58 460-517 235-292 (306)
178 TIGR03017 EpsF chain length de 95.3 2.3 4.9E-05 49.6 22.4 18 426-443 344-361 (444)
179 PF06008 Laminin_I: Laminin Do 95.3 5.6 0.00012 43.5 30.0 25 426-450 187-211 (264)
180 TIGR02500 type_III_yscD type I 95.2 0.086 1.9E-06 61.2 9.9 83 93-200 10-95 (410)
181 PF08317 Spc7: Spc7 kinetochor 95.2 7.3 0.00016 44.1 30.6 31 242-272 68-98 (325)
182 PF07926 TPR_MLP1_2: TPR/MLP1/ 95.1 3.8 8.3E-05 40.2 19.9 30 243-272 4-33 (132)
183 COG4477 EzrA Negative regulato 95.0 10 0.00022 45.1 43.3 30 472-501 381-410 (570)
184 PF10481 CENP-F_N: Cenp-F N-te 94.8 1.5 3.3E-05 47.7 16.9 25 392-416 7-31 (307)
185 PF05384 DegS: Sensor protein 94.8 4.6 9.9E-05 41.2 19.6 118 242-363 27-151 (159)
186 PRK10869 recombination and rep 94.7 14 0.0003 45.0 29.0 13 582-594 429-441 (553)
187 TIGR00634 recN DNA repair prot 94.6 15 0.00032 44.7 28.2 35 405-439 303-337 (563)
188 KOG4807 F-actin binding protei 94.6 11 0.00024 43.1 29.7 39 242-280 291-329 (593)
189 KOG1850 Myosin-like coiled-coi 94.5 10 0.00022 42.4 38.3 198 315-532 107-312 (391)
190 PF13166 AAA_13: AAA domain 94.4 18 0.00038 44.9 36.9 31 567-597 484-514 (712)
191 KOG2293 Daxx-interacting prote 94.4 0.082 1.8E-06 61.8 6.9 82 98-199 443-530 (547)
192 PF10168 Nup88: Nuclear pore c 94.3 4.8 0.00011 50.2 22.4 38 417-454 632-669 (717)
193 PLN03229 acetyl-coenzyme A car 94.3 17 0.00037 45.1 26.0 16 246-261 433-448 (762)
194 PRK10869 recombination and rep 94.2 18 0.00038 44.0 28.2 6 806-811 530-535 (553)
195 KOG1892 Actin filament-binding 94.1 0.16 3.5E-06 62.5 8.6 93 77-187 354-448 (1629)
196 PF12325 TMF_TATA_bd: TATA ele 94.0 2.2 4.7E-05 41.6 14.8 43 316-358 67-109 (120)
197 COG4477 EzrA Negative regulato 94.0 18 0.00038 43.3 43.6 10 214-223 51-60 (570)
198 PF06785 UPF0242: Uncharacteri 93.9 9.8 0.00021 42.8 21.0 85 420-504 102-186 (401)
199 COG4026 Uncharacterized protei 93.8 1.3 2.7E-05 47.0 13.5 67 297-363 136-202 (290)
200 TIGR01000 bacteriocin_acc bact 93.8 18 0.00039 42.7 25.3 22 464-485 296-317 (457)
201 KOG4593 Mitotic checkpoint pro 93.7 22 0.00048 43.6 44.4 12 196-207 32-43 (716)
202 PLN02939 transferase, transfer 93.7 29 0.00063 44.7 32.4 65 488-552 325-395 (977)
203 PF09787 Golgin_A5: Golgin sub 93.6 21 0.00046 42.9 37.5 20 315-334 185-204 (511)
204 PF10498 IFT57: Intra-flagella 93.6 3.8 8.2E-05 47.0 18.1 16 377-392 331-346 (359)
205 PF13514 AAA_27: AAA domain 93.5 34 0.00074 45.1 44.8 16 624-639 1080-1095(1111)
206 PF15254 CCDC14: Coiled-coil d 93.5 15 0.00032 45.5 23.4 31 431-461 427-457 (861)
207 PF08614 ATG16: Autophagy prot 93.5 0.98 2.1E-05 47.2 12.4 79 426-504 83-161 (194)
208 PF08614 ATG16: Autophagy prot 93.4 1.4 2.9E-05 46.2 13.3 21 242-262 67-87 (194)
209 KOG1937 Uncharacterized conser 93.4 20 0.00043 41.9 35.8 37 444-480 388-424 (521)
210 PF15450 DUF4631: Domain of un 93.2 23 0.0005 42.2 45.7 42 316-357 166-212 (531)
211 KOG0982 Centrosomal protein Nu 93.1 21 0.00046 41.5 29.5 48 293-340 219-266 (502)
212 PF09304 Cortex-I_coil: Cortex 93.1 7.6 0.00017 37.0 16.1 65 295-366 15-79 (107)
213 PF12325 TMF_TATA_bd: TATA ele 93.0 5.7 0.00012 38.7 15.8 39 293-331 72-110 (120)
214 KOG1899 LAR transmembrane tyro 93.0 22 0.00047 43.1 23.0 24 516-539 278-301 (861)
215 COG2433 Uncharacterized conser 92.9 4.8 0.00011 48.4 18.0 31 466-496 474-504 (652)
216 TIGR01663 PNK-3'Pase polynucle 92.9 0.3 6.5E-06 58.5 8.4 77 96-187 25-101 (526)
217 PF00769 ERM: Ezrin/radixin/mo 92.8 8.2 0.00018 42.1 18.6 53 444-496 74-126 (246)
218 PRK12704 phosphodiesterase; Pr 92.7 29 0.00062 42.0 25.4 15 729-743 414-429 (520)
219 PF10168 Nup88: Nuclear pore c 92.7 7.7 0.00017 48.5 20.4 8 126-133 310-317 (717)
220 PF13851 GAS: Growth-arrest sp 92.7 16 0.00034 38.8 26.8 17 241-257 26-42 (201)
221 PF00769 ERM: Ezrin/radixin/mo 92.7 8.7 0.00019 41.9 18.5 84 434-517 43-126 (246)
222 PF15066 CAGE1: Cancer-associa 92.6 26 0.00056 41.2 29.4 68 294-365 343-410 (527)
223 PF15450 DUF4631: Domain of un 92.5 29 0.00062 41.5 41.8 37 468-504 407-443 (531)
224 TIGR03319 YmdA_YtgF conserved 92.5 30 0.00066 41.7 25.7 11 733-743 413-423 (514)
225 KOG1103 Predicted coiled-coil 92.5 22 0.00048 40.2 25.8 38 502-539 242-279 (561)
226 PF09304 Cortex-I_coil: Cortex 92.3 8.4 0.00018 36.7 15.3 69 422-490 14-82 (107)
227 KOG1850 Myosin-like coiled-coi 92.3 23 0.00049 39.8 42.3 48 465-512 228-275 (391)
228 PF11559 ADIP: Afadin- and alp 92.3 13 0.00029 37.1 18.5 24 504-527 125-148 (151)
229 COG0497 RecN ATPase involved i 92.3 33 0.00072 41.6 27.8 73 445-521 297-369 (557)
230 KOG0579 Ste20-like serine/thre 92.2 36 0.00077 41.9 44.1 21 241-261 796-816 (1187)
231 PF09731 Mitofilin: Mitochondr 92.2 34 0.00075 41.6 27.5 104 451-557 366-487 (582)
232 PF05276 SH3BP5: SH3 domain-bi 92.1 21 0.00045 38.9 30.0 108 424-531 84-196 (239)
233 PF15397 DUF4618: Domain of un 91.8 23 0.00051 38.9 31.2 34 315-348 72-105 (258)
234 KOG4787 Uncharacterized conser 91.8 36 0.00079 41.0 23.9 27 426-452 461-487 (852)
235 PRK10361 DNA recombination pro 91.7 35 0.00076 40.7 26.8 15 538-552 368-382 (475)
236 PF13870 DUF4201: Domain of un 91.5 19 0.0004 37.1 19.2 33 240-272 40-72 (177)
237 COG3096 MukB Uncharacterized p 91.3 46 0.001 41.2 38.5 61 304-364 349-409 (1480)
238 COG0497 RecN ATPase involved i 90.9 45 0.00098 40.5 27.9 40 404-443 298-337 (557)
239 TIGR03017 EpsF chain length de 90.9 38 0.00082 39.5 28.6 20 294-313 176-195 (444)
240 KOG0804 Cytoplasmic Zn-finger 90.9 9.7 0.00021 44.4 16.8 9 126-134 103-111 (493)
241 PF08826 DMPK_coil: DMPK coile 90.8 3.4 7.5E-05 35.6 10.1 58 301-358 2-59 (61)
242 KOG0241 Kinesin-like protein [ 90.8 12 0.00025 47.3 18.1 69 102-186 466-534 (1714)
243 KOG4807 F-actin binding protei 90.6 37 0.00081 39.0 32.9 20 293-312 295-314 (593)
244 COG2433 Uncharacterized conser 90.5 15 0.00033 44.4 18.4 18 95-112 128-147 (652)
245 PF14073 Cep57_CLD: Centrosome 90.2 26 0.00056 36.5 21.2 35 240-274 2-36 (178)
246 PF13851 GAS: Growth-arrest sp 90.0 29 0.00062 36.8 26.8 32 465-496 99-130 (201)
247 KOG0804 Cytoplasmic Zn-finger 90.0 19 0.00042 42.0 18.2 23 50-72 47-69 (493)
248 PF13166 AAA_13: AAA domain 89.9 60 0.0013 40.3 28.7 8 105-112 20-27 (712)
249 PF10481 CENP-F_N: Cenp-F N-te 89.9 15 0.00033 40.4 16.4 112 240-363 16-127 (307)
250 PF03148 Tektin: Tektin family 89.7 46 0.001 38.6 42.1 43 448-490 247-289 (384)
251 KOG2991 Splicing regulator [RN 89.6 36 0.00077 37.2 29.1 45 303-347 122-166 (330)
252 PF04012 PspA_IM30: PspA/IM30 89.5 31 0.00067 36.5 27.7 6 499-504 194-199 (221)
253 KOG0982 Centrosomal protein Nu 89.5 48 0.001 38.7 30.4 16 42-57 38-53 (502)
254 PF10498 IFT57: Intra-flagella 89.4 26 0.00056 40.4 19.0 12 121-132 112-123 (359)
255 PF15254 CCDC14: Coiled-coil d 89.3 68 0.0015 40.1 26.3 16 495-510 544-559 (861)
256 KOG1853 LIS1-interacting prote 89.1 38 0.00083 36.9 22.5 15 514-528 139-153 (333)
257 PF12252 SidE: Dot/Icm substra 89.0 83 0.0018 40.7 31.0 39 252-290 1066-1112(1439)
258 PF11932 DUF3450: Protein of u 88.9 33 0.00072 37.2 18.7 41 298-338 58-98 (251)
259 KOG0243 Kinesin-like protein [ 88.8 86 0.0019 40.6 41.3 106 258-363 406-515 (1041)
260 KOG4438 Centromere-associated 88.7 55 0.0012 38.2 37.7 54 292-345 148-201 (446)
261 PRK10884 SH3 domain-containing 88.6 7.1 0.00015 41.5 12.8 20 468-487 134-153 (206)
262 PF12795 MscS_porin: Mechanose 88.5 39 0.00085 36.4 24.3 17 403-419 192-208 (240)
263 TIGR01000 bacteriocin_acc bact 88.5 59 0.0013 38.4 26.5 9 563-571 320-328 (457)
264 PRK00106 hypothetical protein; 88.4 68 0.0015 39.0 27.5 10 733-742 434-443 (535)
265 PF11559 ADIP: Afadin- and alp 88.1 30 0.00065 34.5 18.6 37 412-448 54-90 (151)
266 PF10146 zf-C4H2: Zinc finger- 87.9 24 0.00052 38.2 16.5 45 314-358 50-94 (230)
267 TIGR02977 phageshock_pspA phag 87.6 43 0.00092 35.8 25.5 17 292-308 9-25 (219)
268 KOG0239 Kinesin (KAR3 subfamil 87.5 86 0.0019 39.2 23.0 17 642-658 396-412 (670)
269 smart00787 Spc7 Spc7 kinetocho 87.5 56 0.0012 37.0 31.1 31 242-272 63-93 (312)
270 PLN02939 transferase, transfer 87.3 1E+02 0.0023 39.9 32.4 15 442-456 328-342 (977)
271 PF00901 Orbi_VP5: Orbivirus o 87.2 64 0.0014 38.4 20.2 35 219-255 53-97 (508)
272 PF06785 UPF0242: Uncharacteri 87.1 60 0.0013 36.8 21.4 24 335-358 131-154 (401)
273 PRK10884 SH3 domain-containing 86.9 11 0.00023 40.2 12.9 23 240-262 91-113 (206)
274 PF12777 MT: Microtubule-bindi 86.9 63 0.0014 36.9 23.2 31 241-271 7-37 (344)
275 PF12777 MT: Microtubule-bindi 86.8 63 0.0014 36.9 23.3 55 450-504 219-273 (344)
276 KOG2685 Cystoskeletal protein 86.5 72 0.0016 37.2 35.2 49 262-311 79-127 (421)
277 PLN03188 kinesin-12 family pro 86.0 1.3E+02 0.0029 39.8 33.9 20 540-559 1233-1252(1320)
278 COG1842 PspA Phage shock prote 85.6 57 0.0012 35.2 22.1 31 475-505 94-124 (225)
279 PF10234 Cluap1: Clusterin-ass 85.6 64 0.0014 35.8 19.9 86 419-504 164-256 (267)
280 KOG4360 Uncharacterized coiled 85.5 89 0.0019 37.4 23.9 43 437-479 260-302 (596)
281 PF14073 Cep57_CLD: Centrosome 85.5 50 0.0011 34.4 23.4 36 426-461 122-157 (178)
282 PF06818 Fez1: Fez1; InterPro 85.3 56 0.0012 34.8 22.1 8 254-261 15-22 (202)
283 PRK10246 exonuclease subunit S 84.9 1.4E+02 0.0031 39.2 48.7 20 533-552 850-869 (1047)
284 KOG4403 Cell surface glycoprot 84.7 45 0.00098 38.9 17.0 36 421-456 256-291 (575)
285 TIGR02977 phageshock_pspA phag 84.6 61 0.0013 34.6 26.4 9 304-312 39-47 (219)
286 COG1842 PspA Phage shock prote 84.1 67 0.0014 34.8 26.8 12 298-309 15-26 (225)
287 PF05335 DUF745: Protein of un 84.0 60 0.0013 34.2 17.9 99 417-515 74-172 (188)
288 KOG1937 Uncharacterized conser 84.0 98 0.0021 36.5 35.2 9 192-200 204-212 (521)
289 PF08581 Tup_N: Tup N-terminal 83.9 21 0.00046 32.4 11.5 49 474-522 26-74 (79)
290 PF15290 Syntaphilin: Golgi-lo 83.5 45 0.00097 37.0 15.7 21 467-487 118-138 (305)
291 KOG4302 Microtubule-associated 83.4 1.3E+02 0.0028 37.5 36.5 24 531-554 359-382 (660)
292 COG4026 Uncharacterized protei 83.4 27 0.00057 37.5 13.5 56 298-353 130-185 (290)
293 PF07111 HCR: Alpha helical co 83.2 1.3E+02 0.0028 37.4 46.3 69 435-503 518-587 (739)
294 PF09738 DUF2051: Double stran 83.2 75 0.0016 35.9 18.0 25 404-428 220-244 (302)
295 PTZ00121 MAEBL; Provisional 83.0 1.9E+02 0.004 39.0 38.1 13 673-685 1861-1873(2084)
296 PF04912 Dynamitin: Dynamitin 83.0 99 0.0021 35.9 26.6 29 243-271 88-116 (388)
297 PF15397 DUF4618: Domain of un 82.9 81 0.0018 34.8 31.5 24 318-341 82-105 (258)
298 KOG1265 Phospholipase C [Lipid 82.9 1.5E+02 0.0032 37.9 26.6 15 278-292 950-964 (1189)
299 PF06818 Fez1: Fez1; InterPro 82.8 70 0.0015 34.0 22.0 16 455-470 169-184 (202)
300 PF10212 TTKRSYEDQ: Predicted 82.5 1.2E+02 0.0026 36.5 23.6 92 444-535 419-510 (518)
301 TIGR01010 BexC_CtrB_KpsE polys 82.4 47 0.001 37.9 16.6 22 293-314 174-195 (362)
302 PF14992 TMCO5: TMCO5 family 82.1 73 0.0016 35.5 16.9 31 426-456 111-141 (280)
303 TIGR03752 conj_TIGR03752 integ 81.9 15 0.00033 43.4 12.3 37 242-278 59-95 (472)
304 PF09789 DUF2353: Uncharacteri 81.6 1E+02 0.0022 35.1 30.7 25 254-278 14-38 (319)
305 PF14197 Cep57_CLD_2: Centroso 81.4 22 0.00048 31.4 10.4 60 294-353 3-62 (69)
306 PF05266 DUF724: Protein of un 81.4 71 0.0015 33.6 16.0 53 445-497 110-162 (190)
307 PF10205 KLRAQ: Predicted coil 80.7 27 0.00058 33.2 11.3 58 447-504 14-71 (102)
308 COG3206 GumC Uncharacterized p 80.5 1.3E+02 0.0028 35.6 26.4 29 323-351 238-266 (458)
309 KOG0163 Myosin class VI heavy 80.4 1.7E+02 0.0036 36.8 24.2 27 635-661 1164-1190(1259)
310 TIGR01010 BexC_CtrB_KpsE polys 80.4 1E+02 0.0022 35.2 18.4 14 187-200 27-40 (362)
311 PRK11519 tyrosine kinase; Prov 79.6 95 0.0021 39.0 19.2 26 494-519 370-395 (719)
312 PF07889 DUF1664: Protein of u 79.5 56 0.0012 32.3 13.5 52 445-496 68-119 (126)
313 KOG2264 Exostosin EXT1L [Signa 79.5 13 0.00027 44.5 10.5 60 307-366 90-149 (907)
314 KOG1962 B-cell receptor-associ 79.4 29 0.00063 37.2 12.4 16 241-256 113-128 (216)
315 PF06428 Sec2p: GDP/GTP exchan 79.2 15 0.00032 34.8 9.1 59 305-363 3-62 (100)
316 PRK00409 recombination and DNA 79.2 41 0.00089 42.7 15.9 7 149-155 409-415 (782)
317 KOG0239 Kinesin (KAR3 subfamil 78.9 1.8E+02 0.0039 36.5 20.8 35 315-349 173-207 (670)
318 PRK09841 cryptic autophosphory 78.8 90 0.002 39.3 18.7 23 495-517 371-393 (726)
319 PF02403 Seryl_tRNA_N: Seryl-t 78.7 32 0.0007 32.3 11.5 63 294-356 34-99 (108)
320 KOG0244 Kinesin-like protein [ 78.7 2.1E+02 0.0045 36.8 27.3 84 293-380 471-561 (913)
321 COG3096 MukB Uncharacterized p 78.6 1.9E+02 0.0041 36.3 38.0 27 733-769 1370-1396(1480)
322 KOG1103 Predicted coiled-coil 78.4 1.3E+02 0.0028 34.3 24.9 27 461-487 254-280 (561)
323 PRK10698 phage shock protein P 78.3 1E+02 0.0022 33.1 27.1 9 298-306 15-23 (222)
324 PF04899 MbeD_MobD: MbeD/MobD 78.0 33 0.00071 30.5 10.3 54 286-339 11-64 (70)
325 PF04582 Reo_sigmaC: Reovirus 77.5 4.1 8.8E-05 46.0 5.7 24 241-264 34-57 (326)
326 PF11932 DUF3450: Protein of u 77.4 1.1E+02 0.0025 33.1 19.8 8 532-539 142-149 (251)
327 PF07058 Myosin_HC-like: Myosi 77.1 1.3E+02 0.0029 33.8 18.6 15 490-504 69-83 (351)
328 KOG4572 Predicted DNA-binding 77.1 2.1E+02 0.0046 36.2 38.3 34 293-326 999-1032(1424)
329 PF07798 DUF1640: Protein of u 77.1 94 0.002 32.1 21.8 14 349-362 55-68 (177)
330 KOG1924 RhoA GTPase effector D 77.1 3.8 8.3E-05 50.3 5.7 29 31-59 538-566 (1102)
331 PF10267 Tmemb_cc2: Predicted 76.9 85 0.0019 36.7 16.3 27 244-270 214-240 (395)
332 PF05278 PEARLI-4: Arabidopsis 76.7 1.1E+02 0.0024 34.0 16.1 53 303-355 200-252 (269)
333 PF07889 DUF1664: Protein of u 76.7 72 0.0016 31.5 13.4 27 245-271 39-65 (126)
334 PRK10361 DNA recombination pro 76.5 1.8E+02 0.0039 35.0 25.7 26 533-558 377-402 (475)
335 PF05278 PEARLI-4: Arabidopsis 76.3 78 0.0017 35.1 14.9 61 298-358 202-262 (269)
336 PF09789 DUF2353: Uncharacteri 76.2 1.5E+02 0.0032 33.8 26.0 44 462-505 136-179 (319)
337 PF05335 DUF745: Protein of un 76.1 1.1E+02 0.0024 32.3 21.4 88 440-527 69-156 (188)
338 KOG1924 RhoA GTPase effector D 76.0 5.3 0.00011 49.2 6.4 16 118-133 634-649 (1102)
339 PRK10698 phage shock protein P 75.9 1.2E+02 0.0026 32.6 26.1 34 428-461 103-136 (222)
340 TIGR01069 mutS2 MutS2 family p 75.8 68 0.0015 40.7 16.4 12 149-160 404-415 (771)
341 PF15290 Syntaphilin: Golgi-lo 75.7 89 0.0019 34.8 14.9 27 298-324 77-103 (305)
342 KOG2008 BTK-associated SH3-dom 75.5 1.5E+02 0.0032 33.5 26.8 84 421-507 87-175 (426)
343 PF04582 Reo_sigmaC: Reovirus 75.3 5.7 0.00012 44.8 6.1 106 241-358 27-132 (326)
344 COG1382 GimC Prefoldin, chaper 75.3 86 0.0019 30.7 14.2 34 305-338 15-48 (119)
345 PF04102 SlyX: SlyX; InterPro 75.1 15 0.00033 32.2 7.6 49 295-343 3-51 (69)
346 PF13863 DUF4200: Domain of un 75.0 80 0.0017 30.3 17.4 30 467-496 75-104 (126)
347 KOG0288 WD40 repeat protein Ti 75.0 1.6E+02 0.0034 34.6 17.2 15 732-746 363-377 (459)
348 PF09744 Jnk-SapK_ap_N: JNK_SA 74.8 1.1E+02 0.0023 31.5 15.4 26 246-271 40-65 (158)
349 PF10211 Ax_dynein_light: Axon 74.7 1.2E+02 0.0025 31.9 16.0 62 327-388 123-184 (189)
350 PF07058 Myosin_HC-like: Myosi 74.3 1.6E+02 0.0034 33.3 17.2 70 244-313 2-83 (351)
351 KOG0288 WD40 repeat protein Ti 74.3 1.5E+02 0.0033 34.7 16.9 61 429-489 11-71 (459)
352 TIGR00618 sbcc exonuclease Sbc 74.3 2.9E+02 0.0063 36.3 42.9 284 242-526 187-498 (1042)
353 PF04065 Not3: Not1 N-terminal 73.5 1.4E+02 0.0031 32.4 18.0 68 384-451 117-190 (233)
354 PF12761 End3: Actin cytoskele 73.4 46 0.001 35.2 11.8 39 224-264 80-118 (195)
355 PF04871 Uso1_p115_C: Uso1 / p 73.3 1E+02 0.0022 30.7 14.5 10 488-497 85-94 (136)
356 PF05266 DUF724: Protein of un 73.1 1.2E+02 0.0025 32.1 14.8 46 313-358 127-172 (190)
357 PF08826 DMPK_coil: DMPK coile 73.0 47 0.001 28.8 9.7 36 455-490 21-56 (61)
358 PRK09841 cryptic autophosphory 73.0 2E+02 0.0043 36.3 19.5 34 468-501 365-398 (726)
359 PF10211 Ax_dynein_light: Axon 72.8 1.3E+02 0.0028 31.6 20.3 16 240-255 31-46 (189)
360 PRK04406 hypothetical protein; 72.6 30 0.00064 31.1 8.8 33 298-330 13-45 (75)
361 PRK11519 tyrosine kinase; Prov 72.4 81 0.0018 39.6 15.9 37 580-620 530-567 (719)
362 PRK00295 hypothetical protein; 72.3 26 0.00057 30.8 8.3 38 298-335 7-44 (68)
363 PF15035 Rootletin: Ciliary ro 72.2 1.3E+02 0.0029 31.5 19.3 8 357-364 65-72 (182)
364 TIGR02231 conserved hypothetic 72.2 49 0.0011 39.8 13.6 18 741-758 348-365 (525)
365 PF03999 MAP65_ASE1: Microtubu 72.0 4.8 0.0001 49.5 5.0 39 295-333 83-121 (619)
366 PF09744 Jnk-SapK_ap_N: JNK_SA 71.6 1.3E+02 0.0027 31.0 14.7 79 252-338 39-117 (158)
367 PRK00409 recombination and DNA 71.5 1.6E+02 0.0034 37.7 18.1 7 647-653 739-745 (782)
368 TIGR01069 mutS2 MutS2 family p 71.5 63 0.0014 41.0 14.7 40 251-290 506-545 (771)
369 KOG4787 Uncharacterized conser 71.2 2.5E+02 0.0055 34.3 22.5 45 444-488 500-544 (852)
370 PF07106 TBPIP: Tat binding pr 70.9 41 0.00088 34.3 10.8 60 428-487 76-137 (169)
371 PF13870 DUF4201: Domain of un 70.6 1.3E+02 0.0029 30.8 22.7 23 331-353 77-99 (177)
372 PF14988 DUF4515: Domain of un 70.5 1.5E+02 0.0033 31.5 27.6 12 294-305 45-56 (206)
373 PF06005 DUF904: Protein of un 70.4 80 0.0017 28.2 11.3 26 474-499 40-65 (72)
374 KOG4403 Cell surface glycoprot 70.3 2.3E+02 0.005 33.4 20.3 18 294-311 257-274 (575)
375 PF07106 TBPIP: Tat binding pr 70.2 23 0.0005 36.1 8.8 21 312-332 88-108 (169)
376 KOG3647 Predicted coiled-coil 69.9 1.4E+02 0.003 33.1 14.6 18 536-553 207-224 (338)
377 COG3206 GumC Uncharacterized p 69.7 2.4E+02 0.0052 33.4 27.4 45 412-456 287-331 (458)
378 PF12072 DUF3552: Domain of un 69.4 1.6E+02 0.0034 31.1 26.1 42 269-310 44-85 (201)
379 KOG3091 Nuclear pore complex, 69.4 2.2E+02 0.0047 34.2 17.1 43 412-454 357-399 (508)
380 PF15372 DUF4600: Domain of un 69.3 97 0.0021 30.8 12.2 51 502-556 55-106 (129)
381 COG1382 GimC Prefoldin, chaper 69.3 1.1E+02 0.0024 29.9 12.6 30 242-271 6-35 (119)
382 PF09738 DUF2051: Double stran 69.1 99 0.0021 35.0 14.0 17 545-561 228-244 (302)
383 KOG0243 Kinesin-like protein [ 69.1 3.7E+02 0.0079 35.3 44.7 67 299-365 479-545 (1041)
384 PRK04325 hypothetical protein; 68.9 31 0.00067 30.8 8.1 7 315-321 28-34 (74)
385 PRK00736 hypothetical protein; 68.9 31 0.00067 30.3 8.0 37 298-334 7-43 (68)
386 PF03915 AIP3: Actin interacti 68.7 2.5E+02 0.0054 33.3 19.3 9 150-158 42-50 (424)
387 PF03915 AIP3: Actin interacti 68.5 2.5E+02 0.0055 33.2 18.4 15 241-255 150-164 (424)
388 TIGR02231 conserved hypothetic 68.4 51 0.0011 39.7 12.6 6 772-777 384-389 (525)
389 PRK04406 hypothetical protein; 68.2 40 0.00086 30.3 8.7 41 321-361 8-48 (75)
390 KOG2751 Beclin-like protein [S 68.1 2E+02 0.0043 33.9 16.2 62 298-359 178-239 (447)
391 PRK02119 hypothetical protein; 67.4 37 0.00079 30.3 8.3 36 298-333 11-46 (73)
392 PRK15178 Vi polysaccharide exp 67.2 1.9E+02 0.0041 34.4 16.3 143 273-415 222-385 (434)
393 PF01920 Prefoldin_2: Prefoldi 67.0 1E+02 0.0023 28.3 12.8 35 468-502 64-98 (106)
394 PRK02793 phi X174 lysis protei 66.9 35 0.00075 30.4 8.0 25 300-324 12-36 (72)
395 PF13863 DUF4200: Domain of un 66.5 1.2E+02 0.0027 28.9 17.2 54 294-347 51-104 (126)
396 COG4717 Uncharacterized conser 65.6 3.9E+02 0.0085 34.4 39.0 34 472-505 773-806 (984)
397 PF12329 TMF_DNA_bd: TATA elem 65.6 1E+02 0.0022 27.6 10.7 21 316-336 32-52 (74)
398 KOG3091 Nuclear pore complex, 65.3 3.1E+02 0.0066 33.0 18.1 6 159-164 156-161 (508)
399 PRK13729 conjugal transfer pil 64.8 22 0.00049 42.1 8.2 9 193-201 29-37 (475)
400 PRK00295 hypothetical protein; 64.7 42 0.00091 29.5 8.0 38 324-361 5-42 (68)
401 PF14197 Cep57_CLD_2: Centroso 64.4 91 0.002 27.6 10.0 39 315-353 17-55 (69)
402 PRK04325 hypothetical protein; 64.4 44 0.00095 29.9 8.2 40 322-361 7-46 (74)
403 PF04899 MbeD_MobD: MbeD/MobD 64.4 1E+02 0.0023 27.4 10.3 60 440-499 9-68 (70)
404 PF09403 FadA: Adhesion protei 64.2 1.6E+02 0.0034 29.2 12.7 105 219-359 4-121 (126)
405 PF06005 DUF904: Protein of un 64.1 1.1E+02 0.0023 27.4 11.4 37 314-350 15-51 (72)
406 PF02403 Seryl_tRNA_N: Seryl-t 63.9 58 0.0013 30.5 9.5 9 448-456 39-47 (108)
407 PF03962 Mnd1: Mnd1 family; I 63.9 1.1E+02 0.0024 32.1 12.4 16 346-361 111-126 (188)
408 PRK15048 methyl-accepting chem 63.8 3.3E+02 0.0071 32.8 41.0 27 242-268 245-271 (553)
409 PF04102 SlyX: SlyX; InterPro 63.6 38 0.00082 29.7 7.6 33 326-358 6-38 (69)
410 PF11172 DUF2959: Protein of u 63.5 2.1E+02 0.0045 30.5 20.1 32 293-324 61-92 (201)
411 PF05546 She9_MDM33: She9 / Md 63.4 2.1E+02 0.0046 30.6 17.5 66 293-358 6-80 (207)
412 PRK02119 hypothetical protein; 63.2 56 0.0012 29.2 8.6 40 322-361 7-46 (73)
413 PRK13729 conjugal transfer pil 63.2 26 0.00056 41.6 8.3 47 464-510 74-120 (475)
414 KOG2072 Translation initiation 63.1 4.2E+02 0.0091 33.9 39.4 17 442-458 769-785 (988)
415 KOG4438 Centromere-associated 63.1 3.1E+02 0.0068 32.4 41.0 14 541-554 405-418 (446)
416 PF08647 BRE1: BRE1 E3 ubiquit 63.1 1.3E+02 0.0029 28.0 13.6 46 465-510 23-68 (96)
417 PF15456 Uds1: Up-regulated Du 62.8 1.6E+02 0.0035 29.0 12.5 25 240-264 20-44 (124)
418 PF14992 TMCO5: TMCO5 family 62.2 2.7E+02 0.0057 31.3 17.1 31 242-272 11-41 (280)
419 KOG2264 Exostosin EXT1L [Signa 61.6 54 0.0012 39.5 10.4 16 497-512 131-146 (907)
420 PRK00736 hypothetical protein; 61.5 52 0.0011 28.9 8.0 37 325-361 6-42 (68)
421 PRK10476 multidrug resistance 61.3 2.8E+02 0.0061 31.3 16.6 6 628-633 263-268 (346)
422 PF06156 DUF972: Protein of un 61.3 54 0.0012 31.4 8.7 43 294-336 13-55 (107)
423 KOG0247 Kinesin-like protein [ 61.1 2.8E+02 0.006 34.9 16.5 114 464-579 539-669 (809)
424 PF12240 Angiomotin_C: Angiomo 61.0 2.3E+02 0.0051 30.2 19.3 35 433-467 131-165 (205)
425 KOG1962 B-cell receptor-associ 61.0 1.5E+02 0.0032 32.0 12.7 52 465-516 150-201 (216)
426 PLN03229 acetyl-coenzyme A car 60.9 4.4E+02 0.0096 33.4 26.5 16 490-505 669-684 (762)
427 PF15035 Rootletin: Ciliary ro 60.9 2.2E+02 0.0047 29.9 20.2 40 478-517 86-125 (182)
428 PRK14154 heat shock protein Gr 60.7 1.8E+02 0.0039 31.2 13.3 67 243-312 53-119 (208)
429 PF05700 BCAS2: Breast carcino 60.5 2.4E+02 0.0052 30.2 18.3 66 293-358 140-209 (221)
430 KOG2072 Translation initiation 60.3 4.7E+02 0.01 33.5 43.4 16 471-486 770-785 (988)
431 TIGR02971 heterocyst_DevB ABC 60.2 2.8E+02 0.0061 30.9 18.7 6 628-633 258-263 (327)
432 PRK00846 hypothetical protein; 60.0 61 0.0013 29.4 8.3 29 298-326 15-43 (77)
433 PRK02793 phi X174 lysis protei 60.0 59 0.0013 28.9 8.2 40 322-361 6-45 (72)
434 PRK14143 heat shock protein Gr 59.9 1.6E+02 0.0034 32.3 13.0 69 242-313 67-135 (238)
435 KOG4677 Golgi integral membran 59.7 3.7E+02 0.0079 32.0 28.7 238 243-482 198-468 (554)
436 PF05700 BCAS2: Breast carcino 59.6 2.5E+02 0.0054 30.1 18.3 44 315-358 173-216 (221)
437 PRK00846 hypothetical protein; 59.4 82 0.0018 28.6 9.0 36 323-358 12-47 (77)
438 PLN03188 kinesin-12 family pro 59.3 5.8E+02 0.013 34.3 39.6 25 436-460 1119-1143(1320)
439 KOG0972 Huntingtin interacting 59.2 3E+02 0.0066 31.0 15.9 14 379-392 340-353 (384)
440 CHL00118 atpG ATP synthase CF0 59.1 2E+02 0.0044 28.9 16.6 9 305-313 62-70 (156)
441 PF06428 Sec2p: GDP/GTP exchan 59.0 6.7 0.00015 37.1 2.2 65 273-344 14-78 (100)
442 TIGR00998 8a0101 efflux pump m 58.9 2.9E+02 0.0064 30.7 17.3 6 628-633 259-264 (334)
443 PF05384 DegS: Sensor protein 58.7 2.2E+02 0.0048 29.2 23.9 50 436-485 103-152 (159)
444 PRK14139 heat shock protein Gr 58.7 1.9E+02 0.0041 30.5 12.9 68 242-312 32-99 (185)
445 PF08647 BRE1: BRE1 E3 ubiquit 58.4 1.6E+02 0.0035 27.5 13.7 47 298-344 12-58 (96)
446 KOG2391 Vacuolar sorting prote 58.2 80 0.0017 36.0 10.6 58 284-341 213-270 (365)
447 KOG2150 CCR4-NOT transcription 58.2 4.3E+02 0.0093 32.4 18.0 147 386-563 2-171 (575)
448 PTZ00121 MAEBL; Provisional 58.1 6.5E+02 0.014 34.4 43.1 12 606-617 1844-1855(2084)
449 KOG2077 JNK/SAPK-associated pr 58.1 1.8E+02 0.0039 35.4 13.8 59 457-515 320-378 (832)
450 KOG0993 Rab5 GTPase effector R 57.8 3.8E+02 0.0081 31.6 36.3 33 316-348 154-186 (542)
451 KOG2891 Surface glycoprotein [ 57.3 3.1E+02 0.0068 30.5 19.3 166 391-567 279-445 (445)
452 TIGR03752 conj_TIGR03752 integ 56.5 1.2E+02 0.0027 36.1 12.3 18 813-830 427-444 (472)
453 PF07851 TMPIT: TMPIT-like pro 56.4 91 0.002 35.6 10.9 42 317-358 11-52 (330)
454 PF04728 LPP: Lipoprotein leuc 56.1 1E+02 0.0022 26.3 8.4 35 304-338 4-38 (56)
455 PF02841 GBP_C: Guanylate-bind 55.6 3.3E+02 0.0072 30.3 19.6 141 276-416 150-297 (297)
456 PF10267 Tmemb_cc2: Predicted 55.4 4.1E+02 0.0089 31.3 16.5 105 447-556 214-318 (395)
457 PF09727 CortBP2: Cortactin-bi 55.4 2.8E+02 0.0061 29.4 14.8 104 421-531 85-192 (192)
458 PF08172 CASP_C: CASP C termin 55.3 1.7E+02 0.0037 32.1 12.5 81 420-500 2-134 (248)
459 PF15294 Leu_zip: Leucine zipp 55.3 3.4E+02 0.0075 30.4 25.7 210 244-455 32-277 (278)
460 PRK03947 prefoldin subunit alp 55.1 2.2E+02 0.0047 28.0 14.5 95 280-375 5-138 (140)
461 KOG4364 Chromatin assembly fac 54.6 5.2E+02 0.011 32.3 18.3 130 401-538 248-378 (811)
462 PF05377 FlaC_arch: Flagella a 54.5 64 0.0014 27.4 7.0 47 467-513 1-47 (55)
463 COG4913 Uncharacterized protei 54.4 5.5E+02 0.012 32.5 35.5 335 249-589 616-996 (1104)
464 TIGR03545 conserved hypothetic 54.4 1.1E+02 0.0025 37.3 12.0 103 296-399 164-269 (555)
465 PRK14147 heat shock protein Gr 54.1 2E+02 0.0043 29.9 12.1 92 242-336 18-109 (172)
466 PRK13460 F0F1 ATP synthase sub 53.9 2.6E+02 0.0057 28.6 16.6 100 315-414 45-145 (173)
467 PF07851 TMPIT: TMPIT-like pro 53.9 1.8E+02 0.0039 33.3 12.6 82 279-361 2-91 (330)
468 PRK13169 DNA replication intia 53.5 84 0.0018 30.4 8.6 55 283-338 3-57 (110)
469 PF07464 ApoLp-III: Apolipopho 53.1 1.8E+02 0.0039 29.8 11.4 136 279-414 1-150 (155)
470 PF05276 SH3BP5: SH3 domain-bi 53.1 3.4E+02 0.0074 29.7 30.2 206 293-508 8-226 (239)
471 PRK14151 heat shock protein Gr 52.4 2.6E+02 0.0056 29.2 12.7 96 244-342 22-117 (176)
472 PF02994 Transposase_22: L1 tr 52.1 46 0.00099 38.5 7.9 93 240-333 96-188 (370)
473 PF06156 DUF972: Protein of un 51.6 88 0.0019 30.0 8.4 52 312-363 3-54 (107)
474 PRK13453 F0F1 ATP synthase sub 51.6 2.9E+02 0.0062 28.4 16.6 100 315-414 47-147 (173)
475 PF03999 MAP65_ASE1: Microtubu 50.8 59 0.0013 40.1 9.1 256 240-513 140-410 (619)
476 COG3074 Uncharacterized protei 50.6 1.8E+02 0.004 25.9 10.2 71 293-363 8-78 (79)
477 PF15233 SYCE1: Synaptonemal c 50.5 2.7E+02 0.0059 27.7 16.0 112 404-517 7-131 (134)
478 PF14362 DUF4407: Domain of un 50.5 3.9E+02 0.0086 29.6 16.4 129 427-555 108-254 (301)
479 PRK09174 F0F1 ATP synthase sub 50.4 3.4E+02 0.0074 28.9 16.2 98 329-426 82-180 (204)
480 PF15233 SYCE1: Synaptonemal c 50.4 2.7E+02 0.0059 27.7 14.9 131 231-371 2-134 (134)
481 PF15372 DUF4600: Domain of un 50.4 2.7E+02 0.0059 27.7 13.4 122 392-527 5-126 (129)
482 PF15456 Uds1: Up-regulated Du 50.2 2.6E+02 0.0057 27.5 12.0 82 240-326 20-111 (124)
483 KOG3564 GTPase-activating prot 50.1 1.7E+02 0.0037 34.9 11.8 95 266-361 13-107 (604)
484 PF05529 Bap31: B-cell recepto 50.1 95 0.0021 32.3 9.3 70 293-362 122-192 (192)
485 PF06632 XRCC4: DNA double-str 50.0 2.6E+02 0.0057 32.2 13.3 84 241-328 136-219 (342)
486 PRK00286 xseA exodeoxyribonucl 49.4 5E+02 0.011 30.5 17.6 128 251-386 262-391 (438)
487 PRK15422 septal ring assembly 49.4 2.1E+02 0.0045 26.1 10.4 71 293-363 8-78 (79)
488 PF06810 Phage_GP20: Phage min 49.3 1.3E+02 0.0029 30.5 9.9 65 454-518 15-82 (155)
489 KOG4286 Dystrophin-like protei 49.0 6.7E+02 0.015 31.9 24.9 245 298-545 80-345 (966)
490 PF00901 Orbi_VP5: Orbivirus o 49.0 5.6E+02 0.012 30.9 19.6 135 279-414 89-223 (508)
491 PF13949 ALIX_LYPXL_bnd: ALIX 48.8 4E+02 0.0086 29.2 31.0 249 244-514 31-296 (296)
492 PF03357 Snf7: Snf7; InterPro 48.7 1.9E+02 0.0041 28.8 11.0 115 249-363 1-119 (171)
493 TIGR03321 alt_F1F0_F0_B altern 48.7 3.9E+02 0.0084 29.0 16.6 100 315-414 34-134 (246)
494 PF12004 DUF3498: Domain of un 48.7 5.8 0.00013 47.3 0.0 129 240-397 367-495 (495)
495 CHL00019 atpF ATP synthase CF0 48.4 3.3E+02 0.0072 28.1 16.6 100 315-414 53-153 (184)
496 PRK10803 tol-pal system protei 48.2 1E+02 0.0022 33.9 9.6 64 442-505 37-100 (263)
497 KOG4572 Predicted DNA-binding 48.1 7.1E+02 0.015 31.9 31.5 319 242-572 839-1165(1424)
498 PF12709 Kinetocho_Slk19: Cent 48.1 2.3E+02 0.0051 26.3 11.7 77 245-334 11-87 (87)
499 COG4985 ABC-type phosphate tra 48.0 1.6E+02 0.0034 32.1 10.3 83 448-538 164-247 (289)
500 PF10805 DUF2730: Protein of u 48.0 1.7E+02 0.0037 27.8 9.8 66 430-495 34-101 (106)
No 1
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=99.89 E-value=2.8e-20 Score=236.26 Aligned_cols=439 Identities=21% Similarity=0.230 Sum_probs=215.2
Q ss_pred ceEEEEeCCCC-ceeecCccccCCCCccccCCCCEE----EEc-cCCCCCccEEEEEcccccCCCcc------ccccccc
Q 002662 148 SSVCLKDTSTN-GTYVNCERFKKNSSEVNIDHGDII----SFA-APPQHDLAFAFVFRDVSRSTPTM------EGAAAKR 215 (895)
Q Consensus 148 ~~~~L~D~StN-GTfVNg~rI~kng~~~~L~~GDvI----sLg-~~p~~e~af~FVF~dtlv~~~~e------~g~~~~e 215 (895)
++-||+....+ .|||+-.+|............+.| .|. ++|.+.++|.|||++|++|++++ +......
T Consensus 557 ~i~~lk~~~~gr~tflpl~~i~~~~~~~~~~~~g~~~~a~dli~~d~~~~~~~~~~l~~t~Iv~~l~~A~~l~~~~~~~~ 636 (1163)
T COG1196 557 AIEFLKENKAGRATFLPLDRIKPLRSLKSDAAPGFLGLASDLIDFDPKYEPAVRFVLGDTLVVDDLEQARRLARKLRIKY 636 (1163)
T ss_pred HHHHHhhcCCCccccCchhhhccccccccccccchhHHHHHHhcCCHHHHHHHHHHhCCeEEecCHHHHHHHHHhcCCCc
Confidence 35677776655 999999999751111111123333 233 56788889999999999999998 2221255
Q ss_pred cceeecccccccccccccCCCCCCCH-H---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 002662 216 KAEEYVSDNKRLKGIGICSPDGPLSL-D---DFRSLQRSNTELRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKESVS 291 (895)
Q Consensus 216 KS~am~G~s~~~~G~~~sa~~~~~~l-d---~Vr~Le~e~~eLr~qLee~~~~i~~lr~Ei~~i~er~e~El~El~e~lr 291 (895)
+.+|++|+.+.++|.+++....+.+. . ++..|..++..+..++.....++..+..++..+... +.++...+
T Consensus 637 riVTl~G~~~~~~G~~tGG~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~- 711 (1163)
T COG1196 637 RIVTLDGDLVEPSGSITGGSRNKRSSLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDL----LEELRRQL- 711 (1163)
T ss_pred eEEecCCcEEeCCeeeecCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH-
Confidence 77888888888888777552221111 1 333455666666666666666655555555444333 22222222
Q ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 002662 292 ISYLHQLKVLRDMLD-------AKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEE 364 (895)
Q Consensus 292 kklE~QL~ELq~kLe-------e~ekeL~el~~~k~kLEsEleEL~~qLee~e~~~aeL~kelkkLe~qI~ELkrqLEeE 364 (895)
..+..++..+...+. .....+..+...+..+..++..+..++...+..+..+...+..++..+.++...+...
T Consensus 712 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~ 791 (1163)
T COG1196 712 EELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQAL 791 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122222222332222 2222222333333333333333333333333333333333333333333333211111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHH---
Q 002662 365 RNLRRVDRENAEADLKAAVQKSQLETQEKLKRLSDAASRRELEQQEVINKLQIAE--------------KQSSLQVE--- 427 (895)
Q Consensus 365 r~~~~EElEe~~~eLk~qLqkl~~El~eerkk~eee~~~~~eElee~l~KLeE~E--------------Kk~r~elE--- 427 (895)
. .....++..+..++..+..+..++..|.... ......++.+...+..+++.. ..+..+++
T Consensus 792 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ei~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~ 869 (1163)
T COG1196 792 Q-EELEELEEELEEAERRLDALERELESLEQRR-ERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELE 869 (1163)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 1 1111222222222223333333333333322 122222222222222222221 22222222
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHH
Q 002662 428 ----SLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAARE---------VAWA 494 (895)
Q Consensus 428 ----dLk~kLE~~ra~l~~lEkk~reLEkqLeEEk~~~~~lqkei~elE~EireLeeELE~ek~e~e---------el~d 494 (895)
.+...+...+.....+++.++.+...+.+.+.....+...+..+..+...+...+........ ++..
T Consensus 870 ~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 949 (1163)
T COG1196 870 AEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETELER 949 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHH
Confidence 222222222222222223333333333332222222222222222222222222222222111 3555
Q ss_pred HHHHHHHHHHH-------HHhhHHHHHHH----------HHHHHHHHHHHHHHH-----HHhhhhHHHHHHHHHHHHHHH
Q 002662 495 KVSGLELDILA-------ATRDLDFERRR----------LKAARERIMLRETQL-----RAFYSTTEEISVLFARQQEQL 552 (895)
Q Consensus 495 ~v~~LE~ELek-------a~r~LE~Ek~r----------Lq~~rErL~~~eqql-----kaeiEk~EEiee~rk~~~~qL 552 (895)
.+..|+.+++. ++.+|+....| +..++..|+..+..+ ..|+++|..++.+|...|+.|
T Consensus 950 ~i~~le~~i~~lg~VN~~Aiee~e~~~~r~~~l~~~~~dl~~a~~~l~~~i~~~d~~~~~~f~~~f~~In~~F~~if~~L 1029 (1163)
T COG1196 950 EIERLEEEIEALGPVNLRAIEEYEEVEERYEELKSQREDLEEAKEKLLEVIEELDKEKRERFKETFDKINENFSEIFKEL 1029 (1163)
T ss_pred HHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66666666542 55555555554 333444555554444 277799999999999999999
Q ss_pred HH---HhhhhhhhhhhcccccccccCCCCC---CCcccccCcccccc
Q 002662 553 KA---MQKTLEDEENYENTSVDIDLCVPDG---ENSRTIVGEKLPNG 593 (895)
Q Consensus 553 r~---LQ~~LEdeek~~s~~lelDl~p~ek---rl~~mSgGEKs~~~ 593 (895)
-. ....|.++++||++++++-++|-+| .|..|||||||.+.
T Consensus 1030 ~~GG~a~L~l~~~dd~l~~Giei~a~ppgK~~~~l~~LSGGEKsLtA 1076 (1163)
T COG1196 1030 FGGGTAELELTEPDDPLTAGIEISARPPGKKLQSLSLLSGGEKSLTA 1076 (1163)
T ss_pred CCCCeeEEEeCCCCchhhcCcEEEEECCCCCccchhhcCCcHHHHHH
Confidence 65 4577788888999999999999999 79999999998754
No 2
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=99.84 E-value=3.5e-18 Score=201.90 Aligned_cols=364 Identities=17% Similarity=0.191 Sum_probs=217.2
Q ss_pred EEEc-cCCCCCccEEEEEcccccCCCcc------ccccccccceeecccccccccccc--cCCCCCCCHHHHHHHHHHHH
Q 002662 182 ISFA-APPQHDLAFAFVFRDVSRSTPTM------EGAAAKRKAEEYVSDNKRLKGIGI--CSPDGPLSLDDFRSLQRSNT 252 (895)
Q Consensus 182 IsLg-~~p~~e~af~FVF~dtlv~~~~e------~g~~~~eKS~am~G~s~~~~G~~~--sa~~~~~~ld~Vr~Le~e~~ 252 (895)
|+|. |++...++|.||||.++||++++ |++.++.||+|+.||+|+|+|+++ +.+.+...|.+++.|...-.
T Consensus 605 l~Li~yd~~l~~amefvFG~tlVc~~~d~AKkVaf~~~i~~rsVTl~GDV~dP~GtlTGGs~~~~a~~L~~l~~l~~~~~ 684 (1174)
T KOG0933|consen 605 LSLIGYDDELKKAMEFVFGSTLVCDSLDVAKKVAFDPKIRTRSVTLEGDVYDPSGTLTGGSRSKGADLLRQLQKLKQAQK 684 (1174)
T ss_pred HHHhcCCHHHHHHHHHHhCceEEecCHHHHHHhhcccccccceeeecCceeCCCCcccCCCCCCcccHHHHHHHHHHHHH
Confidence 4444 67777789999999999999998 889999999999999999999999 44444445666655554433
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHH
Q 002662 253 ELRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKESVSISYLHQLKVLRDMLDAKQKELAE-----ISRISAEQKHEME 327 (895)
Q Consensus 253 eLr~qLee~~~~i~~lr~Ei~~i~er~e~El~El~e~lrkklE~QL~ELq~kLee~ekeL~e-----l~~~k~kLEsEle 327 (895)
+|+ ....+++.+..++..+ .....+. +.+..||.-....|...++++.. +.+.+..+..++.
T Consensus 685 ~~~----~~q~el~~le~eL~~l--------e~~~~kf-~~l~~ql~l~~~~l~l~~~r~~~~e~~~~~~~~~~~~e~v~ 751 (1174)
T KOG0933|consen 685 ELR----AIQKELEALERELKSL--------EAQSQKF-RDLKQQLELKLHELALLEKRLEQNEFHKLLDDLKELLEEVE 751 (1174)
T ss_pred HHH----HHHHHHHHHHHHHHHH--------HHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHH
Confidence 333 3344444444433222 1111222 45666666666667777666663 7778888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 328 DLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRRVDRENAEADLKAAVQKSQLETQEKLKRLSDAASRRELE 407 (895)
Q Consensus 328 EL~~qLee~e~~~aeL~kelkkLe~qI~ELkrqLEeEr~~~~EElEe~~~eLk~qLqkl~~El~eerkk~eee~~~~~eE 407 (895)
++..+|.+....+......+..++..+.+.+ .++..++.++++.+..++..++....++......+ +...-..++
T Consensus 752 e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~~----~~re~rlkdl~keik~~k~~~e~~~~~~ek~~~e~-e~l~lE~e~ 826 (1174)
T KOG0933|consen 752 ESEQQIKEKERALKKCEDKISTLEKKMKDAK----ANRERRLKDLEKEIKTAKQRAEESSKELEKRENEY-ERLQLEHEE 826 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh----hhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 8888888888888888888888888877776 55555555555544443333322221111100000 011111122
Q ss_pred HHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 002662 408 QQEV--------------INKLQIAEKQSSLQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELEN 473 (895)
Q Consensus 408 lee~--------------l~KLeE~EKk~r~elEdLk~kLE~~ra~l~~lEkk~reLEkqLeEEk~~~~~lqkei~elE~ 473 (895)
++.+ +..|......+...+..+..++...++.+....++++..+..+...-........+....+.
T Consensus 827 l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt~i~~~~~~~e~~~~e~~~~~l 906 (1174)
T KOG0933|consen 827 LEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDIDTEISGLLTSQEKCLSEKSDGEL 906 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhHHHhhhhhHHHHHHHHhhcccc
Confidence 2222 22222222222223333333334444444444455555554444433333444667777788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHhhHHHHHHHHHHHHHHHHHH---HHHHH--------
Q 002662 474 EIKKLREELESEKAAREVAWAKVSGLELDILA----------ATRDLDFERRRLKAARERIMLR---ETQLR-------- 532 (895)
Q Consensus 474 EireLeeELE~ek~e~eel~d~v~~LE~ELek----------a~r~LE~Ek~rLq~~rErL~~~---eqqlk-------- 532 (895)
++++|.+++..+..+...+...++.|..+++= --..|||+......++++|... ...++
T Consensus 907 ~~kkle~e~~~~~~e~~~~~k~v~~l~~k~~wi~~ek~~fgk~gt~yDf~~~~p~~are~l~~Lq~k~~~l~k~vn~~~m 986 (1174)
T KOG0933|consen 907 ERKKLEHEVTKLESEKANARKEVEKLLKKHEWIGDEKRLFGKKGTDYDFESYDPHEAREELKKLQEKKEKLEKTVNPKNM 986 (1174)
T ss_pred hHHHHHhHHHHhhhhHHHHHHHHHHHHHhccchhHHHHhhcCCCCccccccCCHhHHHHHHHHhhHHHHHHHhhcCHHHH
Confidence 89999999999999999999999999998851 1178888887777766655444 22221
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHhhhh-hhhhhhccccc
Q 002662 533 AFYSTTEEISVLFARQQEQLKAMQKTL-EDEENYENTSV 570 (895)
Q Consensus 533 aeiEk~EEiee~rk~~~~qLr~LQ~~L-Edeek~~s~~l 570 (895)
.++++.| ..+..|+.+...+ .|+.++..++.
T Consensus 987 ~mle~~E-------~~~~~lk~k~~~Ie~Dk~kI~ktI~ 1018 (1174)
T KOG0933|consen 987 DMLERAE-------EKEAALKTKKEIIEKDKSKIKKTIE 1018 (1174)
T ss_pred HHHHHHH-------HHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 4445555 3444555555444 44444444444
No 3
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.83 E-value=4.4e-17 Score=206.71 Aligned_cols=62 Identities=16% Similarity=0.098 Sum_probs=52.9
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHh--hhhhhhhhhcccccccccCCCCC---CCcccccCccccccc
Q 002662 533 AFYSTTEEISVLFARQQEQLKAMQ--KTLEDEENYENTSVDIDLCVPDG---ENSRTIVGEKLPNGH 594 (895)
Q Consensus 533 aeiEk~EEiee~rk~~~~qLr~LQ--~~LEdeek~~s~~lelDl~p~ek---rl~~mSgGEKs~~~~ 594 (895)
.|+.+|+.++.+|...|+.|..+. ..|.++.+++..++.+.|.|.++ .+..||||||+.+..
T Consensus 1019 ~f~~~f~~~~~~f~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lSgge~~~~~l 1085 (1164)
T TIGR02169 1019 VFMEAFEAINENFNEIFAELSGGTGELILENPDDPFAGGLELSAKPKGKPVQRLEAMSGGEKSLTAL 1085 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCeEEEEecCCCCcccCCeEEEEEcCCCCCCcchhcCcchHHHHHH
Confidence 677999999999999999998555 44467778899999999999888 788999999987655
No 4
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.83 E-value=1.1e-16 Score=204.46 Aligned_cols=288 Identities=23% Similarity=0.298 Sum_probs=246.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH--
Q 002662 291 SISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLR-- 368 (895)
Q Consensus 291 rkklE~QL~ELq~kLee~ekeL~el~~~k~kLEsEleEL~~qLee~e~~~aeL~kelkkLe~qI~ELkrqLEeEr~~~-- 368 (895)
++.++.++.+++.++++..+.+.++..++.++.+++.++..++++.+..+..+.+.+..+..+|.+++++|+++.+.+
T Consensus 1240 ~k~~E~~l~elq~k~~~~~~~~~~l~~q~~~l~~E~~~l~~~lee~e~~~~~~~r~~~~~~~qle~~k~qle~e~r~k~~ 1319 (1930)
T KOG0161|consen 1240 DKKLEAQLSELQLKLDEQERLRNDLTAKRSRLQNENEELSRQLEEAEAKLSALSRDKQALESQLEELKRQLEEETREKSA 1319 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999999999999999999999999999999999999999999999999999999999999999977542
Q ss_pred ------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------H----
Q 002662 369 ------------------RVDRENAEADLKAAVQKSQLETQEKLKRLSDAASRRELEQQEVINKLQIA-------E---- 419 (895)
Q Consensus 369 ------------------~EElEe~~~eLk~qLqkl~~El~eerkk~eee~~~~~eElee~l~KLeE~-------E---- 419 (895)
+++..+.+.++..++.+++.++.+|++++.+...+..+++++...++..+ .
T Consensus 1320 l~~~l~~l~~e~~~l~e~leee~e~~~~l~r~lsk~~~e~~~~~~k~e~~~~~~~eelee~kk~l~~~lq~~qe~~e~~~ 1399 (1930)
T KOG0161|consen 1320 LENALRQLEHELDLLREQLEEEQEAKNELERKLSKANAELAQWKKKFEEEVLQRLEELEELKKKLQQRLQELEEQIEAAN 1399 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 22233346666789999999999999999988887788877766665211 1
Q ss_pred ----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 420 ----------KQSSLQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAR 489 (895)
Q Consensus 420 ----------Kk~r~elEdLk~kLE~~ra~l~~lEkk~reLEkqLeEEk~~~~~lqkei~elE~EireLeeELE~ek~e~ 489 (895)
.+++.+++++..+++..++.+..++++++.|++.+++|+.....+...++..+.+.+.+.+++..+..++
T Consensus 1400 ~~~~~Lek~k~~l~~el~d~~~d~~~~~~~~~~le~k~k~f~k~l~e~k~~~e~l~~Eld~aq~e~r~~~tel~kl~~~l 1479 (1930)
T KOG0161|consen 1400 AKNASLEKAKNRLQQELEDLQLDLERSRAAVAALEKKQKRFEKLLAEWKKKLEKLQAELDAAQRELRQLSTELQKLKNAL 1479 (1930)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 2556668899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH------------------------HHHHHhhHHHHHHHHHHHHH--------------HHHHHHHHH
Q 002662 490 EVAWAKVSGLELD------------------------ILAATRDLDFERRRLKAARE--------------RIMLRETQL 531 (895)
Q Consensus 490 eel~d~v~~LE~E------------------------Leka~r~LE~Ek~rLq~~rE--------------rL~~~eqql 531 (895)
+++.+.+..|.++ +++..+.++.++.+|+.+++ |+++..+++
T Consensus 1480 ee~~e~~e~l~renk~l~~ei~dl~~~~~e~~k~v~elek~~r~le~e~~elQ~aLeElE~~le~eE~~~lr~~~~~~~~ 1559 (1930)
T KOG0161|consen 1480 EELLEQLEELRRENKNLSQEIEDLEEQKDEGGKRVHELEKEKRRLEQEKEELQAALEELEAALEAEEDKKLRLQLELQQL 1559 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 9999988887772 23456777887777777644 555566777
Q ss_pred HHhh-----hhHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccccc------cccCCCC
Q 002662 532 RAFY-----STTEEISVLFARQQEQLKAMQKTLEDEENYENTSVD------IDLCVPD 578 (895)
Q Consensus 532 kaei-----Ek~EEiee~rk~~~~qLr~LQ~~LEdeek~~s~~le------lDl~p~e 578 (895)
+.++ ++++++++.+++++..|.+|+.+|+++.+.++.++. +|+++++
T Consensus 1560 r~e~er~l~ek~Ee~E~~rk~~~~~i~~~q~~Le~E~r~k~e~~r~KKkle~di~elE 1617 (1930)
T KOG0161|consen 1560 RSEIERRLQEKDEEIEELRKNLQRQLESLQAELEAETRSKSEALRSKKKLEGDINELE 1617 (1930)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhhhhcchHHHH
Confidence 7665 899999999999999999999999999999999884 5676665
No 5
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=99.77 E-value=1.6e-15 Score=182.22 Aligned_cols=177 Identities=19% Similarity=0.309 Sum_probs=103.3
Q ss_pred CCEEEEccCCCCCccEEEEEcccccCCCcc------------------ccccccccceeecccccccccc--cccCCCCC
Q 002662 179 GDIISFAAPPQHDLAFAFVFRDVSRSTPTM------------------EGAAAKRKAEEYVSDNKRLKGI--GICSPDGP 238 (895)
Q Consensus 179 GDvIsLg~~p~~e~af~FVF~dtlv~~~~e------------------~g~~~~eKS~am~G~s~~~~G~--~~sa~~~~ 238 (895)
.|.|.+. +|.+.++|.|+.++|+||+.++ +|.+ .++||||+||....+|. +.+....+
T Consensus 697 fDLv~~~-d~~~r~aFYfaLrdtLV~d~LeQAtRiaygk~rr~RVvTL~G~l-Ie~SGtmtGGG~~v~~g~mg~~~~~t~ 774 (1293)
T KOG0996|consen 697 FDLVKCK-DEKFRPAFYFALRDTLVADNLEQATRIAYGKDRRWRVVTLDGSL-IEKSGTMTGGGKKVKGGRMGTSIRVTG 774 (1293)
T ss_pred hhhhccC-CHHHHHHHHHHHhhhhhhcCHHHHHHHhhcCCCceEEEEeccee-ecccccccCCCCcCCCCCCCCccccCC
Confidence 3445433 4677889999999999999998 5555 88999999997776543 22222445
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 239 LSLDDFRSLQRSNTELRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKESVSISYLHQLKVLRDMLDAKQKELAEISRI 318 (895)
Q Consensus 239 ~~ld~Vr~Le~e~~eLr~qLee~~~~i~~lr~Ei~~i~er~e~El~El~e~lrkklE~QL~ELq~kLee~ekeL~el~~~ 318 (895)
++-..|..|+++...+...+..+..++-.+...+..++.+ ..++.-.+ .++...++.+-..++.+++++.++.+.
T Consensus 775 ~s~~~v~~le~~l~~~~~~~~~~~~~~~~~ee~~~~lr~~----~~~l~~~l-~~~~~~~k~~~~~~~~l~~~i~~~E~~ 849 (1293)
T KOG0996|consen 775 VSKESVEKLERALSKMSDKARQHQEQLHELEERVRKLRER----IPELENRL-EKLTASVKRLAELIEYLESQIAELEAA 849 (1293)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778899999999988888777776655555555444444 33333333 234444444444444444444444433
Q ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 002662 319 SAEQKH---EMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDE 363 (895)
Q Consensus 319 k~kLEs---EleEL~~qLee~e~~~aeL~kelkkLe~qI~ELkrqLEe 363 (895)
+.+-.. .+.++..+++.++..+.++++...+ +++++.|+..++.
T Consensus 850 ~~k~~~d~~~l~~~~~~ie~l~kE~e~~qe~~~K-k~~i~~lq~~i~~ 896 (1293)
T KOG0996|consen 850 VLKKVVDKKRLKELEEQIEELKKEVEELQEKAAK-KARIKELQNKIDE 896 (1293)
T ss_pred hhhccCcHHHHHHHHHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHHH
Confidence 222222 2233344455555555555433333 4555555554444
No 6
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=99.74 E-value=2.1e-19 Score=221.05 Aligned_cols=281 Identities=22% Similarity=0.287 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH--
Q 002662 291 SISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLR-- 368 (895)
Q Consensus 291 rkklE~QL~ELq~kLee~ekeL~el~~~k~kLEsEleEL~~qLee~e~~~aeL~kelkkLe~qI~ELkrqLEeEr~~~-- 368 (895)
+++++.+|.+++.++++.++.+.++...+.+|+.++.+|..+|+.++..+..+.+.+..+..+|.+++++|+++...+
T Consensus 182 ~K~lE~qL~El~~klee~er~~~el~~~k~kL~~E~~eL~~qLee~e~~~~~l~r~k~~L~~qLeelk~~leeEtr~k~~ 261 (859)
T PF01576_consen 182 RKQLEAQLNELQAKLEESERQRNELTEQKAKLQSENSELTRQLEEAESQLSQLQREKSSLESQLEELKRQLEEETRAKQA 261 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHhhhhhh
Confidence 588999999999999999999999999999999999999999999999999999999999999999999999977543
Q ss_pred ------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------
Q 002662 369 ------------------RVDRENAEADLKAAVQKSQLETQEKLKRLSDAASRRELEQQEVINKLQ-------------- 416 (895)
Q Consensus 369 ------------------~EElEe~~~eLk~qLqkl~~El~eerkk~eee~~~~~eElee~l~KLe-------------- 416 (895)
+++....+..+..++.+++.++.+|++++..+.....+++++...+|.
T Consensus 262 L~~~l~~le~e~~~L~eqleeE~e~k~~l~~qlsk~~~El~~~k~K~e~e~~~~~EelEeaKKkL~~~L~el~e~le~~~ 341 (859)
T PF01576_consen 262 LEKQLRQLEHELEQLREQLEEEEEAKSELERQLSKLNAELEQWKKKYEEEAEQRTEELEEAKKKLERKLQELQEQLEEAN 341 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111222355666789999999999999999888777777777655552
Q ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 417 -------IAEKQSSLQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAR 489 (895)
Q Consensus 417 -------E~EKk~r~elEdLk~kLE~~ra~l~~lEkk~reLEkqLeEEk~~~~~lqkei~elE~EireLeeELE~ek~e~ 489 (895)
..-+++..+++++..+|+..++.+..++++++.|++.+.+|+..+..+...+..++.+.+.+..+++.++.++
T Consensus 342 ~~~~~LeK~k~rL~~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~~~~~~~e~d~~q~e~r~~~te~~~Lk~~l 421 (859)
T PF01576_consen 342 AKVSSLEKTKKRLQGELEDLTSELEKAQAAAAELEKKQRKFDKQLAEWKAKVEELQAERDAAQREARELETELFKLKNEL 421 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhh
Confidence 1113667778999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHH------------------------HHHHHHhhHHHHHHHHHHHHH--------------HHHHHHHHH
Q 002662 490 EVAWAKVSGLEL------------------------DILAATRDLDFERRRLKAARE--------------RIMLRETQL 531 (895)
Q Consensus 490 eel~d~v~~LE~------------------------ELeka~r~LE~Ek~rLq~~rE--------------rL~~~eqql 531 (895)
+++...+..|++ +|+++++.|+.++.+++.+++ ||++.++++
T Consensus 422 ee~~e~~e~lere~k~L~~El~dl~~q~~~~~k~v~eLek~kr~LE~e~~El~~~leE~E~~l~~~E~~~lRl~~el~~~ 501 (859)
T PF01576_consen 422 EELQEQLEELERENKQLQDELEDLTSQLDDAGKSVHELEKAKRRLEQEKEELQEQLEEAEDALEAEEQKKLRLQVELQQL 501 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhhccchhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888777 223466778777777655533 888889999
Q ss_pred HHhh-----hhHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccccc
Q 002662 532 RAFY-----STTEEISVLFARQQEQLKAMQKTLEDEENYENTSVD 571 (895)
Q Consensus 532 kaei-----Ek~EEiee~rk~~~~qLr~LQ~~LEdeek~~s~~le 571 (895)
+++| ++.+++++.|++++++|+.|+..||.+.+.++.++.
T Consensus 502 r~e~er~l~eKeeE~E~~Rr~~qr~l~~le~~LE~E~k~r~~~~r 546 (859)
T PF01576_consen 502 RQEIERELQEKEEEFEETRRNHQRQLESLEAELEEERKERAEALR 546 (859)
T ss_dssp ---------------------------------------------
T ss_pred HHHHHHHHHhhhhHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHH
Confidence 8887 888999999999999999999999999999998885
No 7
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.70 E-value=8.5e-14 Score=166.79 Aligned_cols=115 Identities=14% Similarity=0.182 Sum_probs=83.0
Q ss_pred ceEEEEeCCCC-ceeecCccccCCCCcccc-CCCCE---EEEc-cCCCCCccEEEEEcccccCCCcc------ccccccc
Q 002662 148 SSVCLKDTSTN-GTYVNCERFKKNSSEVNI-DHGDI---ISFA-APPQHDLAFAFVFRDVSRSTPTM------EGAAAKR 215 (895)
Q Consensus 148 ~~~~L~D~StN-GTfVNg~rI~kng~~~~L-~~GDv---IsLg-~~p~~e~af~FVF~dtlv~~~~e------~g~~~~e 215 (895)
||.||++.+.. -||||...|.-+.....| .+|++ |+.. ++|.++.++.|++|+++||++++ +|--++-
T Consensus 545 CI~ylKeqr~~~~TFlPld~i~v~~~~e~lr~~~g~rlv~Dvi~ye~e~eka~~~a~gn~Lvcds~e~Ar~l~y~~~~r~ 624 (1141)
T KOG0018|consen 545 CIQYLKEQRLEPMTFLPLDSIRVKPVNEKLRELGGVRLVIDVINYEPEYEKAVQFACGNALVCDSVEDARDLAYGGEIRF 624 (1141)
T ss_pred HHHHHHHhccCCccccchhhhhcCcccccccCcCCeEEEEEecCCCHHHHHHHHHHhccceecCCHHHHHHhhhcccccc
Confidence 56788887766 899999877552223344 46664 2222 46777889999999999999998 4433377
Q ss_pred cceeecccccccccccccCCCCCCCHHH--HHHHHHHHHHHHHHHHHHHH
Q 002662 216 KAEEYVSDNKRLKGIGICSPDGPLSLDD--FRSLQRSNTELRKQLESQVL 263 (895)
Q Consensus 216 KS~am~G~s~~~~G~~~sa~~~~~~ld~--Vr~Le~e~~eLr~qLee~~~ 263 (895)
|.+||+|..+-.+|++++...|+. ||+ |..|-....+|..+|.+++.
T Consensus 625 k~valdGtl~~ksGlmsGG~s~~~-wdek~~~~L~~~k~rl~eel~ei~~ 673 (1141)
T KOG0018|consen 625 KVVALDGTLIHKSGLMSGGSSGAK-WDEKEVDQLKEKKERLLEELKEIQK 673 (1141)
T ss_pred eEEEeeeeEEeccceecCCccCCC-cCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999987666654 654 45666666666666666654
No 8
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.64 E-value=1.7e-12 Score=166.76 Aligned_cols=326 Identities=21% Similarity=0.277 Sum_probs=240.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-----HHHHhhh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 245 RSLQRSNTELRKQLESQVLEI-----DKLRNEN-----RVVVERHEKEMKEMKESVSISYLHQLKVLRDMLDAKQKELAE 314 (895)
Q Consensus 245 r~Le~e~~eLr~qLee~~~~i-----~~lr~Ei-----~~i~er~e~El~El~e~lrkklE~QL~ELq~kLee~ekeL~e 314 (895)
+.|+.++.+|+.+|++++..+ ..++.++ +.-.++...+..+-.+..++++..++..++..|+...+...+
T Consensus 1522 r~le~e~~elQ~aLeElE~~le~eE~~~lr~~~~~~~~r~e~er~l~ek~Ee~E~~rk~~~~~i~~~q~~Le~E~r~k~e 1601 (1930)
T KOG0161|consen 1522 RRLEQEKEELQAALEELEAALEAEEDKKLRLQLELQQLRSEIERRLQEKDEEIEELRKNLQRQLESLQAELEAETRSKSE 1601 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 556677777777777775432 3333222 223333334444445556789999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH------HH-------HHHHH-
Q 002662 315 ISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRRVDRE------NA-------EADLK- 380 (895)
Q Consensus 315 l~~~k~kLEsEleEL~~qLee~e~~~aeL~kelkkLe~qI~ELkrqLEeEr~~~~EElE------e~-------~~eLk- 380 (895)
+.+.+++|+.+|++|..+++.+...+.++.+.+++++.++.+|++++++.+....+-++ .+ ..+|+
T Consensus 1602 ~~r~KKkle~di~elE~~ld~ank~~~d~~K~lkk~q~~~k~lq~~~e~~~~~~~e~~~q~~~aerr~~~l~~E~eeL~~ 1681 (1930)
T KOG0161|consen 1602 ALRSKKKLEGDINELEIQLDHANKANEDAQKQLKKLQAQLKELQRELEDAQRAREELLEQLAEAERRLAALQAELEELRE 1681 (1930)
T ss_pred HHhhhhhhhcchHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998765433321 11 11111
Q ss_pred --HHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Q 002662 381 --AAVQKSQLETQE---------------------KLKRLSDAASRRELEQQEVINKL---QIAEKQSSLQVESLKLKLD 434 (895)
Q Consensus 381 --~qLqkl~~El~e---------------------erkk~eee~~~~~eElee~l~KL---eE~EKk~r~elEdLk~kLE 434 (895)
..+.+++..+.. .+.+++.+......++++.+..+ .++.+++..+...+..+|.
T Consensus 1682 ~l~~~~Rarr~aE~e~~E~~e~i~~~~~~~s~l~~~KrklE~~i~~l~~elee~~~~~~~~~Er~kka~~~a~~~~~el~ 1761 (1930)
T KOG0161|consen 1682 KLEALERARRQAELELEELAERVNELNAQNSSLTAEKRKLEAEIAQLQSELEEEQSELRAAEERAKKAQADAAKLAEELR 1761 (1930)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHH
Confidence 122222222222 22222222333333444433333 3666788888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 435 ETRERLVTSDNKVRLLETQVCKEQNVSASW--------KKRVEELENEIKKLREELESEKAAREVAWAKVSGLELDILAA 506 (895)
Q Consensus 435 ~~ra~l~~lEkk~reLEkqLeEEk~~~~~l--------qkei~elE~EireLeeELE~ek~e~eel~d~v~~LE~ELeka 506 (895)
..+..+..++...+.|++++.+.+.+...+ .+.|..++.+|+.|+.+|+.+...+.+..+.++.+++.+...
T Consensus 1762 ~Eq~~~~~le~~k~~LE~~~kdLq~rL~e~E~~a~~~~k~~i~~Learir~LE~~l~~E~~~~~e~~k~~rk~er~vkEl 1841 (1930)
T KOG0161|consen 1762 KEQETSQKLERLKKSLERQVKDLQLRLDEAEQAALKGGKKQIAKLEARIRELESELEGEQRRKAEAIKGLRKKERRVKEL 1841 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHhHhhhhhHHHhHHHHHHHHHHHHH
Confidence 999999999988888888888766655555 778999999999999999999999999999999999999999
Q ss_pred HhhHHHHHH---HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccccccc
Q 002662 507 TRDLDFERR---RLKAARERIMLRETQLRAFYSTTEEISVLFARQQEQLKAMQKTLEDEENYENTSVDIDL 574 (895)
Q Consensus 507 ~r~LE~Ek~---rLq~~rErL~~~eqqlkaeiEk~EEiee~rk~~~~qLr~LQ~~LEdeek~~s~~lelDl 574 (895)
..+++.++. +++..+++++.+..+++++++.+|+....... +++.+|+.|++ ...++..++.++
T Consensus 1842 ~~q~eed~k~~~~~q~~~dkl~~k~~~~krQleeaE~~~~~~~~---k~R~~q~ele~-a~erad~~e~~~ 1908 (1930)
T KOG0161|consen 1842 QFQVEEDKKNIERLQDLVDKLQAKIKQYKRQLEEAEEEANQNLS---KYRKLQRELEE-AEERADTAESEL 1908 (1930)
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH---HHHHHHHHHHH-HHHHHHHHHHHH
Confidence 999988887 68888999999999999999888877766665 77788888876 334444444443
No 9
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=99.56 E-value=5.2e-11 Score=131.43 Aligned_cols=270 Identities=20% Similarity=0.268 Sum_probs=199.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH
Q 002662 241 LDDFRSLQRSNTELRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKESVS------ISYLHQLKVLRDMLDAKQKELAE 314 (895)
Q Consensus 241 ld~Vr~Le~e~~eLr~qLee~~~~i~~lr~Ei~~i~er~e~El~El~e~lr------kklE~QL~ELq~kLee~ekeL~e 314 (895)
|++||.|+.+|..|..++..+.... ...+..+...|+.++.+++..+. .+++.++..++..+++.+..+..
T Consensus 17 IekVr~LE~~N~~Le~~i~~~~~~~---~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~ 93 (312)
T PF00038_consen 17 IEKVRFLEQENKRLESEIEELREKK---GEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEE 93 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHhcc---cccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHH
Confidence 7999999999999999988887662 45556677788888888887773 57888899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH---------HHHHHHHHHHHH
Q 002662 315 ISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRRVDRE---------NAEADLKAAVQK 385 (895)
Q Consensus 315 l~~~k~kLEsEleEL~~qLee~e~~~aeL~kelkkLe~qI~ELkrqLEeEr~~~~EElE---------e~~~eLk~qLqk 385 (895)
.......++.++..|...+........+++..+..|+.+|.-++...+++...+...+. ....+|...|..
T Consensus 94 e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~heeEi~~L~~~~~~~~~~e~~~~~~~dL~~~L~e 173 (312)
T PF00038_consen 94 ELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQNHEEEIEELREQIQSSVTVEVDQFRSSDLSAALRE 173 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTT----------------HHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccccccceeecccccccchhhhhh
Confidence 99999999999999999999999999999999999988888877777666643321110 001222333333
Q ss_pred HHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 386 SQL-----------ETQEKLKRLSDAASRRELEQQEVINKLQIAEKQSSLQVESLKLKLDETRERLVTSDNKVRLLETQV 454 (895)
Q Consensus 386 l~~-----------El~eerkk~eee~~~~~eElee~l~KLeE~EKk~r~elEdLk~kLE~~ra~l~~lEkk~reLEkqL 454 (895)
++. ++..|-+....+...........+..+.+..+.++..+..|..+++.++.....|++.+..++..+
T Consensus 174 iR~~ye~~~~~~~~e~e~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~ 253 (312)
T PF00038_consen 174 IRAQYEEIAQKNREELEEWYQSKLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRL 253 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhhhhhcccccccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHH
Confidence 333 333333333323333333344445555666677788888888888888888888888888888888
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 002662 455 CKEQNVSASWKKRVEELENEIKKLREELESEKAAREVAWAKVSGLELDILAATRDLDFERRR 516 (895)
Q Consensus 455 eEEk~~~~~lqkei~elE~EireLeeELE~ek~e~eel~d~v~~LE~ELeka~r~LE~Ek~r 516 (895)
......+ +..+..++.++.+++.++.....+|+++.+..-.|+.||..|++.|+.|..|
T Consensus 254 ~~~~~~~---~~~i~~le~el~~l~~~~~~~~~ey~~Ll~~K~~Ld~EIatYR~LLEgEE~R 312 (312)
T PF00038_consen 254 DEEREEY---QAEIAELEEELAELREEMARQLREYQELLDVKLALDAEIATYRKLLEGEESR 312 (312)
T ss_dssp HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHC--
T ss_pred HHHHHHH---HHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCcccC
Confidence 7775544 8889999999999999999999999999999999999999999999987543
No 10
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.53 E-value=1.8e-10 Score=146.39 Aligned_cols=60 Identities=15% Similarity=0.059 Sum_probs=46.7
Q ss_pred hhhHHHHHHHHHHHHHHHHH-Hh------hhhhhhhhhcccccccccCCCCC---CCcccccCccccccc
Q 002662 535 YSTTEEISVLFARQQEQLKA-MQ------KTLEDEENYENTSVDIDLCVPDG---ENSRTIVGEKLPNGH 594 (895)
Q Consensus 535 iEk~EEiee~rk~~~~qLr~-LQ------~~LEdeek~~s~~lelDl~p~ek---rl~~mSgGEKs~~~~ 594 (895)
.++|..++.+|...|..|=. |- ..|++...++..++.+.+.|.++ .+..||||+|..+..
T Consensus 1031 ~~~F~~v~~~f~~~F~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lS~g~~~~~~l 1100 (1179)
T TIGR02168 1031 RERFKDTFDQVNENFQRVFPKLFGGGEAELRLTDPEDLLEAGIEIFAQPPGKKNQNLSLLSGGEKALTAL 1100 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCcccccCceEEEeCCCCccccccccCccHHHHHHH
Confidence 67777777777777777732 21 56677788999999999999877 889999999876654
No 11
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.50 E-value=1.3e-10 Score=138.20 Aligned_cols=72 Identities=21% Similarity=0.245 Sum_probs=49.4
Q ss_pred ceeecCccccCCCCcccc-CCCCEEEEc----cCCCCCccEEEEEcccccCCCcccccc----ccccceeeccccccccc
Q 002662 159 GTYVNCERFKKNSSEVNI-DHGDIISFA----APPQHDLAFAFVFRDVSRSTPTMEGAA----AKRKAEEYVSDNKRLKG 229 (895)
Q Consensus 159 GTfVNg~rI~kng~~~~L-~~GDvIsLg----~~p~~e~af~FVF~dtlv~~~~e~g~~----~~eKS~am~G~s~~~~G 229 (895)
-||+|-+||.. . .+.+ .+.|.|-|. +.|+|.++|.-||+.|.+|.+++.+-- -..-++||.||-...+|
T Consensus 576 VTF~PLNrl~~-r-~v~yp~~sdaiPli~kl~y~p~fdka~k~Vfgktivcrdl~qa~~~ak~~~ln~ITl~GDqvskkG 653 (1200)
T KOG0964|consen 576 VTFMPLNRLKA-R-DVEYPKDSDAIPLISKLRYEPQFDKALKHVFGKTIVCRDLEQALRLAKKHELNCITLSGDQVSKKG 653 (1200)
T ss_pred eEEeecccCch-h-hccCCCCCCccchHHHhCcchhhHHHHHHHhCceEEeccHHHHHHHHHhcCCCeEEeccceecccC
Confidence 59999999987 2 3333 788887776 578999999999999999999981100 01123455555555555
Q ss_pred ccc
Q 002662 230 IGI 232 (895)
Q Consensus 230 ~~~ 232 (895)
.++
T Consensus 654 ~lT 656 (1200)
T KOG0964|consen 654 VLT 656 (1200)
T ss_pred Ccc
Confidence 444
No 12
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=99.49 E-value=2.2e-11 Score=140.89 Aligned_cols=267 Identities=19% Similarity=0.214 Sum_probs=179.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHH
Q 002662 240 SLDDFRSLQRSNTELRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKESVS-------------ISYLHQLKVLRDMLD 306 (895)
Q Consensus 240 ~ld~Vr~Le~e~~eLr~qLee~~~~i~~lr~Ei~~i~er~e~El~El~e~lr-------------kklE~QL~ELq~kLe 306 (895)
-|++||.|+++|..|..++..++.. +..+..+++..|+.|+..++..+. ++++.++.++..+++
T Consensus 54 YIekVR~LEaqN~~L~~di~~lr~~---~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~ 130 (546)
T KOG0977|consen 54 YIEKVRFLEAQNRKLEHDINLLRGV---VGRETSGIKAKYEAELATARKLLDETARERAKLEIEITKLREELKELRKKLE 130 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh---ccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4899999999999999999999877 666667777788887777766662 477788888888888
Q ss_pred HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 002662 307 AKQKELAEI-------SRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRRVDRENAEADL 379 (895)
Q Consensus 307 e~ekeL~el-------~~~k~kLEsEleEL~~qLee~e~~~aeL~kelkkLe~qI~ELkrqLEeEr~~~~EElEe~~~eL 379 (895)
++++.+... ...+..++.++.-+..++..++..+..|.++..+|..+|..+..+|++|.-.+.+ +++.+..|
T Consensus 131 ~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d-~~n~~q~L 209 (546)
T KOG0977|consen 131 KAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDETLLRVD-LQNRVQTL 209 (546)
T ss_pred HHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH-HHhHHHHH
Confidence 887777654 4445555556666666666666666666666667777777777777776633211 11111111
Q ss_pred HHHHH---------------H----------------HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH------------
Q 002662 380 KAAVQ---------------K----------------SQLETQEKLKRLSDAASRRELEQQE-VINKL------------ 415 (895)
Q Consensus 380 k~qLq---------------k----------------l~~El~eerkk~eee~~~~~eElee-~l~KL------------ 415 (895)
...|. + |...+.+.+..|+.......++++. +..|+
T Consensus 210 leel~f~~~~h~~eI~e~~~~~~rd~t~~~r~~F~~eL~~Ai~eiRaqye~~~~~nR~diE~~Y~~kI~~i~~~~~~~~~ 289 (546)
T KOG0977|consen 210 LEELAFLKRIHKQEIEEERRKARRDTTADNREYFKNELALAIREIRAQYEAISRQNRKDIESWYKRKIQEIRTSAERANV 289 (546)
T ss_pred HHHHHHHHhccHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccccc
Confidence 11110 0 1111222233333222222222222 22222
Q ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 416 -----QIAEKQSSLQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAARE 490 (895)
Q Consensus 416 -----eE~EKk~r~elEdLk~kLE~~ra~l~~lEkk~reLEkqLeEEk~~~~~lqkei~elE~EireLeeELE~ek~e~e 490 (895)
.|..++.+..+..|+.+|..+......|++++..|.-++++++..+ ...+...++++.+|+.++..+..+++
T Consensus 290 ~~~~~rEEl~~~R~~i~~Lr~klselE~~n~~L~~~I~dL~~ql~e~~r~~---e~~L~~kd~~i~~mReec~~l~~Elq 366 (546)
T KOG0977|consen 290 EQNYAREELRRIRSRISGLRAKLSELESRNSALEKRIEDLEYQLDEDQRSF---EQALNDKDAEIAKMREECQQLSVELQ 366 (546)
T ss_pred hhHHHHHHHHHHHhcccchhhhhccccccChhHHHHHHHHHhhhhhhhhhh---hhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 2444455566666777777776677777788888888888887766 77899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHH
Q 002662 491 VAWAKVSGLELDILAATRDLDFE 513 (895)
Q Consensus 491 el~d~v~~LE~ELeka~r~LE~E 513 (895)
.|.+....|+.||..|...|+.+
T Consensus 367 ~LlD~ki~Ld~EI~~YRkLLege 389 (546)
T KOG0977|consen 367 KLLDTKISLDAEIAAYRKLLEGE 389 (546)
T ss_pred HhhchHhHHHhHHHHHHHHhccc
Confidence 99999999999999999988886
No 13
>PF00498 FHA: FHA domain; InterPro: IPR000253 The forkhead-associated (FHA) domain [] is a phosphopeptide recognition domain found in many regulatory proteins. It displays specificity for phosphothreonine-containing epitopes but will also recognise phosphotyrosine with relatively high affinity. It spans approximately 80-100 amino acid residues folded into an 11-stranded beta sandwich, which sometimes contain small helical insertions between the loops connecting the strands []. To date, genes encoding FHA-containing proteins have been identified in eubacterial and eukaryotic but not archaeal genomes. The domain is present in a diverse range of proteins, such as kinases, phosphatases, kinesins, transcription factors, RNA-binding proteins and metabolic enzymes which partake in many different cellular processes - DNA repair, signal transduction, vesicular transport and protein degradation are just a few examples.; GO: 0005515 protein binding; PDB: 1LGQ_B 1LGP_A 2CSW_A 2PIE_A 3FM8_A 3MDB_B 3GQS_B 1UHT_A 1WLN_A 3POA_A ....
Probab=99.48 E-value=6.8e-14 Score=120.05 Aligned_cols=67 Identities=33% Similarity=0.488 Sum_probs=59.0
Q ss_pred eEecCCCCCCceecCCCcccccceEEEEeccCCCCCCCCCCCCceEEEEe-CCCCceeecCccccCCCCccccCCCCEEE
Q 002662 105 HCIGRLVDDAHFQIDSNAVSANHCKIYRKKFASGDLDHSPSGCSSVCLKD-TSTNGTYVNCERFKKNSSEVNIDHGDIIS 183 (895)
Q Consensus 105 ~~IGR~~~~~di~i~~~~IS~~Hc~I~~~~~~~~~~~~~~~~~~~~~L~D-~StNGTfVNg~rI~kng~~~~L~~GDvIs 183 (895)
++|||++.| +++|+++.||+.||.|++... ..|||+| .|+|||||||.+|.+ +.++.|.+||+|.
T Consensus 1 ~~iGR~~~~-di~l~~~~iSr~Ha~i~~~~~------------~~~~i~d~~s~ngt~vng~~l~~-~~~~~L~~gd~i~ 66 (68)
T PF00498_consen 1 VTIGRSPDC-DIVLPDPSISRRHARISFDDD------------GQFYIEDLGSTNGTFVNGQRLGP-GEPVPLKDGDIIR 66 (68)
T ss_dssp EEEESSTTS-SEEETSTTSSTTSEEEEEETT------------EEEEEEESSSSS-EEETTEEESS-TSEEEE-TTEEEE
T ss_pred CEEcCCCCC-CEEECCHheeeeeeEEEEece------------eeEEEEeCCCCCcEEECCEEcCC-CCEEECCCCCEEE
Confidence 689999887 999999999999999998753 2599999 589999999999999 7889999999999
Q ss_pred Ec
Q 002662 184 FA 185 (895)
Q Consensus 184 Lg 185 (895)
||
T Consensus 67 ~G 68 (68)
T PF00498_consen 67 FG 68 (68)
T ss_dssp ET
T ss_pred cC
Confidence 86
No 14
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=99.32 E-value=1.9e-13 Score=168.83 Aligned_cols=315 Identities=24% Similarity=0.301 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHhhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 244 FRSLQRSNTELRKQLESQVLEI-------DKLRNENRVVVERHEKEMKE---MKESVSISYLHQLKVLRDMLDAKQKELA 313 (895)
Q Consensus 244 Vr~Le~e~~eLr~qLee~~~~i-------~~lr~Ei~~i~er~e~El~E---l~e~lrkklE~QL~ELq~kLee~ekeL~ 313 (895)
.+.|+.++.+|+.+|+++...+ -++..++..++..++..+.+ -.+.+++++..+|..|+..|+...+.++
T Consensus 463 kr~LE~e~~El~~~leE~E~~l~~~E~~~lRl~~el~~~r~e~er~l~eKeeE~E~~Rr~~qr~l~~le~~LE~E~k~r~ 542 (859)
T PF01576_consen 463 KRRLEQEKEELQEQLEEAEDALEAEEQKKLRLQVELQQLRQEIERELQEKEEEFEETRRNHQRQLESLEAELEEERKERA 542 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhHHHHHHHHhHHHHHHHHHH
Confidence 4667777777777777774444 23333335555555554444 4555578999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH------HHHHHHHHHHHHHH--
Q 002662 314 EISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRRVD------RENAEADLKAAVQK-- 385 (895)
Q Consensus 314 el~~~k~kLEsEleEL~~qLee~e~~~aeL~kelkkLe~qI~ELkrqLEeEr~~~~EE------lEe~~~eLk~qLqk-- 385 (895)
.+...+++|+.+|.+|..+|..+.....++.+.++++..+|.+++..|++....+.+. .+.....|+..+..
T Consensus 543 ~~~r~kkKLE~~l~eLe~~ld~~n~~~~e~~k~~kk~q~qlkdlq~~lee~~~~~~~~~~~~~~~e~r~~~l~~elee~~ 622 (859)
T PF01576_consen 543 EALREKKKLESDLNELEIQLDHANRANEEAQKQLKKLQAQLKDLQRELEEAQRAREELREQLAVSERRLRALQAELEELR 622 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999977544222 11122222211111
Q ss_pred --------HHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Q 002662 386 --------SQLETQE---------------------KLKRLSDAASRRELEQQEVIN---KLQIAEKQSSLQVESLKLKL 433 (895)
Q Consensus 386 --------l~~El~e---------------------erkk~eee~~~~~eElee~l~---KLeE~EKk~r~elEdLk~kL 433 (895)
.+..+.. .+.++.........++++... .+.++.++...++..|..+|
T Consensus 623 ~~~~~a~r~rk~aE~el~e~~~~~~~l~~~~~~l~~~kr~le~~i~~l~~eleE~~~~~~~~~ek~kka~~~~~~l~~eL 702 (859)
T PF01576_consen 623 EALEQAERARKQAESELDELQERLNELTSQNSSLSEEKRKLEAEIQQLEEELEEEQSEAEAAEEKAKKAQAQAAQLAEEL 702 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 1111111 111222111112222222222 22355578888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 434 DETRERLVTSDNKVRLLETQVCKEQNVSASW--------KKRVEELENEIKKLREELESEKAAREVAWAKVSGLELDILA 505 (895)
Q Consensus 434 E~~ra~l~~lEkk~reLEkqLeEEk~~~~~l--------qkei~elE~EireLeeELE~ek~e~eel~d~v~~LE~ELek 505 (895)
...+..+..+++..+.|+.++.+.+..+..+ .+.|..++.+|++|+.+|+.+.+.+.++...++.+++.+..
T Consensus 703 ~~Eq~~~~~le~~k~~LE~q~keLq~rl~e~E~~~~~~~k~~i~kLE~ri~eLE~~Le~E~r~~~~~~k~~rk~er~~kE 782 (859)
T PF01576_consen 703 RQEQDHNQHLEKEKKALERQVKELQARLEEAEQSALKGGKKQIAKLEARIRELEEELESEQRRRAEAQKQLRKLERRVKE 782 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 9999999999999999999888876665554 57788999999999999999999999999999999999999
Q ss_pred HHhhHHHHHH---HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhh
Q 002662 506 ATRDLDFERR---RLKAARERIMLRETQLRAFYSTTEEISVLFARQQEQLKAMQKTLED 561 (895)
Q Consensus 506 a~r~LE~Ek~---rLq~~rErL~~~eqqlkaeiEk~EEiee~rk~~~~qLr~LQ~~LEd 561 (895)
...+++.++. +++...++++.+++.++.+++.+++....... +.+.+|+.|++
T Consensus 783 l~~q~ee~~k~~~~~~d~~~kl~~k~k~~krq~eeaEe~~~~~~~---k~Rk~q~elee 838 (859)
T PF01576_consen 783 LQFQVEEERKNAERLQDLVDKLQLKLKQLKRQLEEAEEEASRNLA---KYRKLQRELEE 838 (859)
T ss_dssp ---------------------------------------------------SSSSHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH---HHHHHHHHHHH
Confidence 9999999887 58888899999999999999888877766555 66777888765
No 15
>cd00060 FHA Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins localize to the nucleus, where they participate in establishing or maintaining cell cycle checkpoints, DNA repair, or transcriptional regulation. Members of the FHA family include: Dun1, Rad53, Cds1, Mek1, KAPP(kinase-associated protein phosphatase),and Ki-67 (a human nuclear protein related to cell proliferation).
Probab=99.26 E-value=4.8e-11 Score=108.78 Aligned_cols=91 Identities=31% Similarity=0.412 Sum_probs=73.6
Q ss_pred eEEEEeecccccccCcceeEEecC-CceEecCCCCCCceecCCCcccccceEEEEeccCCCCCCCCCCCCceEEEEe-CC
Q 002662 79 WGVLTAISNNARKRHQGINILLTA-DEHCIGRLVDDAHFQIDSNAVSANHCKIYRKKFASGDLDHSPSGCSSVCLKD-TS 156 (895)
Q Consensus 79 WG~L~~i~~~~~~r~~g~~i~L~~-~~~~IGR~~~~~di~i~~~~IS~~Hc~I~~~~~~~~~~~~~~~~~~~~~L~D-~S 156 (895)
|..|.++... ..+..+.|.. ..++|||...|+++.|.++.||+.||.|.+... ..+|+.| .|
T Consensus 1 ~~~L~~~~~~----~~~~~~~l~~~~~~~iGr~~~~~~i~l~~~~iS~~H~~i~~~~~------------~~~~~~~~~s 64 (102)
T cd00060 1 VPRLVVLSGD----ASGRRYYLDPGGTYTIGRDSDNCDIVLDDPSVSRRHAVIRYDGD------------GGVVLIDLGS 64 (102)
T ss_pred CeEEEEecCC----CceeEEEECCCCeEEECcCCCcCCEEcCCCCeeCcceEEEEcCC------------CCEEEEECCC
Confidence 4456665542 1345788888 899999999988999999999999999998752 0256666 79
Q ss_pred CCceeecCccccCCCCccccCCCCEEEEcc
Q 002662 157 TNGTYVNCERFKKNSSEVNIDHGDIISFAA 186 (895)
Q Consensus 157 tNGTfVNg~rI~kng~~~~L~~GDvIsLg~ 186 (895)
.||||||+.++.+ +....|.+||+|.|+.
T Consensus 65 ~~g~~vn~~~~~~-~~~~~l~~gd~i~ig~ 93 (102)
T cd00060 65 TNGTFVNGQRVSP-GEPVRLRDGDVIRLGN 93 (102)
T ss_pred CCCeEECCEECCC-CCcEECCCCCEEEECC
Confidence 9999999999997 5678999999999995
No 16
>TIGR03354 VI_FHA type VI secretion system FHA domain protein. Members of this protein family are FHA (forkhead-associated) domain-containing proteins that are part of type VI secretion loci in a considerable number of bacteria, most of which are known pathogens. Species include Pseudomonas aeruginosa PAO1, Aeromonas hydrophila, Yersinia pestis, Burkholderia mallei, etc.
Probab=99.25 E-value=2.2e-11 Score=138.69 Aligned_cols=77 Identities=23% Similarity=0.376 Sum_probs=69.6
Q ss_pred ceeEEecCCceEecCCCCCCceecCCCc--ccccceEEEEeccCCCCCCCCCCCCceEEEEeCCCCceeec--CccccCC
Q 002662 95 GINILLTADEHCIGRLVDDAHFQIDSNA--VSANHCKIYRKKFASGDLDHSPSGCSSVCLKDTSTNGTYVN--CERFKKN 170 (895)
Q Consensus 95 g~~i~L~~~~~~IGR~~~~~di~i~~~~--IS~~Hc~I~~~~~~~~~~~~~~~~~~~~~L~D~StNGTfVN--g~rI~kn 170 (895)
+..+.+....++|||.+.| +++|+++. ||+.||+|++... .|||+|.|+|||||| |.+|.+
T Consensus 16 ~~~~~f~~~~~~IGR~~~~-d~~l~d~~~~VS~~Ha~I~~~~g-------------~~~l~DlStNGT~VN~sg~~l~~- 80 (396)
T TIGR03354 16 AAQKTFGTNGGTIGRSEDC-DWVLPDPERHVSGRHARIRYRDG-------------AYLLTDLSTNGVFLNGSGSPLGR- 80 (396)
T ss_pred ceEEEECCCCEEEecCCCC-CEEeCCCCCCcchhhcEEEEECC-------------EEEEEECCCCCeEECCCCCCCCC-
Confidence 4578888999999999998 99999998 9999999998743 499999999999999 899998
Q ss_pred CCccccCCCCEEEEcc
Q 002662 171 SSEVNIDHGDIISFAA 186 (895)
Q Consensus 171 g~~~~L~~GDvIsLg~ 186 (895)
+....|.+||+|.||.
T Consensus 81 ~~~~~L~~GD~I~iG~ 96 (396)
T TIGR03354 81 GNPVRLEQGDRLRLGD 96 (396)
T ss_pred CCceEcCCCCEEEECC
Confidence 7778999999999994
No 17
>KOG1882 consensus Transcriptional regulator SNIP1, contains FHA domain [Signal transduction mechanisms]
Probab=99.21 E-value=1.5e-11 Score=127.30 Aligned_cols=130 Identities=17% Similarity=0.145 Sum_probs=96.9
Q ss_pred CCCCccchhhhhcccCCCCCCCCCCCceEEEEeecccccccCcceeEEe-cCCceEecCCCCCCceecCCCcccccceEE
Q 002662 52 TVVPSHFVFWVAGTYAAQPLQNYDPKVWGVLTAISNNARKRHQGINILL-TADEHCIGRLVDDAHFQIDSNAVSANHCKI 130 (895)
Q Consensus 52 ~~~~~~~~~~va~~~~~qp~~~~~~~~WG~L~~i~~~~~~r~~g~~i~L-~~~~~~IGR~~~~~di~i~~~~IS~~Hc~I 130 (895)
.+-.++..+.|..+|..+|.+-.+-.-|-.....+... +..+.+ ..+.|+|||....+||.|++|.+|++||+|
T Consensus 147 l~E~tn~~~gv~v~y~eppearkP~kRwrLy~fk~~e~-----l~~l~iHrqs~yL~gRerkIaDi~idhpScSKQHavi 221 (293)
T KOG1882|consen 147 LLEDTNRFRGVVVKYNEPPEARKPKKRWRLYPFKCYEV-----LPVLYIHRQSCYLDGRERKIADIPIDHPSCSKQHAVI 221 (293)
T ss_pred hhhhhcceeeEEEEecCCchhcCchhheecccccCCcc-----cchheeeeeeeeecCceeeeeccCCCCccccccceee
Confidence 33445556888899999999887767786655443211 112222 468899999887789999999999999999
Q ss_pred EEeccCCCCCCCCCCCCceEEEEe-CCCCceeecCccccCCCCccccCCCCEEEEccC
Q 002662 131 YRKKFASGDLDHSPSGCSSVCLKD-TSTNGTYVNCERFKKNSSEVNIDHGDIISFAAP 187 (895)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~L~D-~StNGTfVNg~rI~kng~~~~L~~GDvIsLg~~ 187 (895)
++..+.+.-....--.....||.| .|+||||||..+|.+ ..++.|..+|+|.|++.
T Consensus 222 QyR~v~~~r~dGt~grrvkpYiiDLgS~NgTfLNnk~Iep-qRYyEL~ekDvlkfgfs 278 (293)
T KOG1882|consen 222 QYRLVEFTRADGTVGRRVKPYIIDLGSGNGTFLNNKVIEP-QRYYELREKDVLKFGFS 278 (293)
T ss_pred eeeecccccCCCccceeeeeEEEecCCCCcceecCcccCc-hheeeeecCceeeeccc
Confidence 987664332111111345699999 699999999999999 78999999999999964
No 18
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.19 E-value=5.9e-07 Score=114.67 Aligned_cols=32 Identities=19% Similarity=0.199 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 002662 244 FRSLQRSNTELRKQLESQVLEIDKLRNENRVV 275 (895)
Q Consensus 244 Vr~Le~e~~eLr~qLee~~~~i~~lr~Ei~~i 275 (895)
+..|..++..|+.++..+...+..+..++..+
T Consensus 672 ~~~l~~e~~~l~~~~~~l~~~l~~~~~~~~~~ 703 (1179)
T TIGR02168 672 ILERRREIEELEEKIEELEEKIAELEKALAEL 703 (1179)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555556655555555555555544333
No 19
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.18 E-value=1.5e-06 Score=111.37 Aligned_cols=11 Identities=27% Similarity=0.383 Sum_probs=6.8
Q ss_pred ceeecCccccC
Q 002662 159 GTYVNCERFKK 169 (895)
Q Consensus 159 GTfVNg~rI~k 169 (895)
-.||||.++..
T Consensus 109 ~~~~n~~~~~~ 119 (1164)
T TIGR02169 109 YYYLNGQRVRL 119 (1164)
T ss_pred eEEECCccccH
Confidence 35677776643
No 20
>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.17 E-value=3.5e-11 Score=133.84 Aligned_cols=116 Identities=30% Similarity=0.294 Sum_probs=89.2
Q ss_pred CCCCCCceEEEEeecccccccCcceeEEecCCceEecCCCCCCceecCCCcccccceEEEEecc----CCCCCCCCCCCC
Q 002662 72 QNYDPKVWGVLTAISNNARKRHQGINILLTADEHCIGRLVDDAHFQIDSNAVSANHCKIYRKKF----ASGDLDHSPSGC 147 (895)
Q Consensus 72 ~~~~~~~WG~L~~i~~~~~~r~~g~~i~L~~~~~~IGR~~~~~di~i~~~~IS~~Hc~I~~~~~----~~~~~~~~~~~~ 147 (895)
.+.-+.+|++|+.+.... .++.+..+.|+|||++.| ++++..+.+|.+|+.|+.... .+-..+ ....
T Consensus 39 ~~~~~~~r~r~~~v~~~~------~~~d~~nd~f~fGR~~~~-d~~ln~~~~s~~~~~i~~~~~~~~~~f~~dr--~~~s 109 (475)
T KOG0615|consen 39 QCATVKPRARLVGVRRGI------KSIDLANDEFTFGRGDSC-DAPLNLNNVSNKHFKILLYNKISKIHFRIDR--DKNS 109 (475)
T ss_pred ccccccchhhhcceeecc------ccceeccceEEecCCCcc-cccccCccccccchheeeeeeeeeeeecccC--CCcc
Confidence 344566799998886543 478899999999999988 888888889999998875410 000111 1244
Q ss_pred ceEEEEeCCCCceeecCccccCCCCccccCCCCEEEEccCCCCCccEEEEEccc
Q 002662 148 SSVCLKDTSTNGTYVNCERFKKNSSEVNIDHGDIISFAAPPQHDLAFAFVFRDV 201 (895)
Q Consensus 148 ~~~~L~D~StNGTfVNg~rI~kng~~~~L~~GDvIsLg~~p~~e~af~FVF~dt 201 (895)
+++||+|.|+||||||..+|++ +..+.|++||+|.|+.+. ...|||.+.
T Consensus 110 n~~y~~DhS~nGT~VN~e~i~k-~~~r~lkN~dei~is~p~----~~~~v~~~~ 158 (475)
T KOG0615|consen 110 NRVYLHDHSRNGTFVNDEMIGK-GLSRILKNGDEISISIPA----LKIFVFEDL 158 (475)
T ss_pred ceEEEEecccCcccccHhHhhc-cccccccCCCEEEeccch----hheeeeecc
Confidence 6899999999999999999999 788899999999998753 345677664
No 21
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=99.07 E-value=3.3e-10 Score=136.20 Aligned_cols=92 Identities=25% Similarity=0.361 Sum_probs=71.3
Q ss_pred CceEEEEeecccccccCcceeEEe---cCCceEecCCCCCCce-----ecCCCcccccceEEEEeccCCCCCCCCCCCCc
Q 002662 77 KVWGVLTAISNNARKRHQGINILL---TADEHCIGRLVDDAHF-----QIDSNAVSANHCKIYRKKFASGDLDHSPSGCS 148 (895)
Q Consensus 77 ~~WG~L~~i~~~~~~r~~g~~i~L---~~~~~~IGR~~~~~di-----~i~~~~IS~~Hc~I~~~~~~~~~~~~~~~~~~ 148 (895)
+-|- |+|++.... ....|.| ...+|+|||.+.| ++ +|+++.||+.||+|++++.
T Consensus 532 ~~w~-l~~~~~~~~---~~~~~~l~~~~~~p~~iG~~~~~-~~~~~~i~i~~~~vS~~Ha~i~~~~~------------- 593 (668)
T PLN02927 532 GEWY-LIPHGDDCC---VSETLCLTKDEDQPCIVGSEPDQ-DFPGMRIVIPSSQVSKMHARVIYKDG------------- 593 (668)
T ss_pred CCeE-EEecCCCCc---ccceeeeecCCCCCeEecCCCCc-CCCCceEEecCCccChhHeEEEEECC-------------
Confidence 3464 556553321 1124667 5667999999998 75 9999999999999999864
Q ss_pred eEEEEe-CCCCceeecCcc---c--cCCCCccccCCCCEEEEccC
Q 002662 149 SVCLKD-TSTNGTYVNCER---F--KKNSSEVNIDHGDIISFAAP 187 (895)
Q Consensus 149 ~~~L~D-~StNGTfVNg~r---I--~kng~~~~L~~GDvIsLg~~ 187 (895)
.+||+| .|+|||||||++ | .+ +.+..|++||+|.||.+
T Consensus 594 ~~~~~Dl~S~nGT~v~~~~~~r~~~~p-~~~~~l~~~d~I~~g~~ 637 (668)
T PLN02927 594 AFFLMDLRSEHGTYVTDNEGRRYRATP-NFPARFRSSDIIEFGSD 637 (668)
T ss_pred EEEEEECCCCCccEEeCCCCceEecCC-CCceEeCCCCEEEeCCC
Confidence 599999 699999998887 4 45 45679999999999975
No 22
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=99.07 E-value=6.5e-06 Score=99.68 Aligned_cols=230 Identities=13% Similarity=0.201 Sum_probs=115.7
Q ss_pred ccccccccceeecccccccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---HHHHHHHHHHHHH
Q 002662 209 EGAAAKRKAEEYVSDNKRLKGIGICSPDGPLSLDDFRSLQRSNTELRKQLESQVLEIDKLRNEN---RVVVERHEKEMKE 285 (895)
Q Consensus 209 ~g~~~~eKS~am~G~s~~~~G~~~sa~~~~~~ld~Vr~Le~e~~eLr~qLee~~~~i~~lr~Ei---~~i~er~e~El~E 285 (895)
+|++ ..++|+|+||+..+.+-..- -|.++..++.++...+.+++.+...+..+.... +.++..++-.+.+
T Consensus 651 ~GDV-~dP~GtlTGGs~~~~a~~L~------~l~~l~~~~~~~~~~q~el~~le~eL~~le~~~~kf~~l~~ql~l~~~~ 723 (1174)
T KOG0933|consen 651 EGDV-YDPSGTLTGGSRSKGADLLR------QLQKLKQAQKELRAIQKELEALERELKSLEAQSQKFRDLKQQLELKLHE 723 (1174)
T ss_pred cCce-eCCCCcccCCCCCCcccHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777 88999999999777553221 245666666666666666666655555554433 3344443333333
Q ss_pred HHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Q 002662 286 MKESVS-------ISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQ----SCTEANEIMKSQKVTI 354 (895)
Q Consensus 286 l~e~lr-------kklE~QL~ELq~kLee~ekeL~el~~~k~kLEsEleEL~~qLee~e~----~~aeL~kelkkLe~qI 354 (895)
+.--.. .++...+.++...+++.+.++.+....+.+.+..+..++..+..... .+.+|.++++.+++.+
T Consensus 724 l~l~~~r~~~~e~~~~~~~~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~~re~rlkdl~keik~~k~~~ 803 (1174)
T KOG0933|consen 724 LALLEKRLEQNEFHKLLDDLKELLEEVEESEQQIKEKERALKKCEDKISTLEKKMKDAKANRERRLKDLEKEIKTAKQRA 803 (1174)
T ss_pred HHHHHHHHhcChHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHhHHHHHHHHHHHHHHHH
Confidence 322221 35555566666666666666666666666666666665555554433 3334444444444444
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 355 DELKTQLDEERNLRRVDRENAEADLKAAVQKSQLETQEKLKRLSDAASRRELEQQEVINKLQIAEKQSSLQVESLKLKLD 434 (895)
Q Consensus 355 ~ELkrqLEeEr~~~~EElEe~~~eLk~qLqkl~~El~eerkk~eee~~~~~eElee~l~KLeE~EKk~r~elEdLk~kLE 434 (895)
.+..+.++.-... .+-+.-..++++..++....++ ......++.+...+..+.........++..++.+|.
T Consensus 804 e~~~~~~ek~~~e-~e~l~lE~e~l~~e~~~~k~~l--------~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~ 874 (1174)
T KOG0933|consen 804 EESSKELEKRENE-YERLQLEHEELEKEISSLKQQL--------EQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELK 874 (1174)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHH
Confidence 4333333221100 0011111222222332222222 233344445555555555555555555555566666
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 002662 435 ETRERLVTSDNKVRLLETQV 454 (895)
Q Consensus 435 ~~ra~l~~lEkk~reLEkqL 454 (895)
...+.+...+.++..+....
T Consensus 875 ~~k~k~~~~dt~i~~~~~~~ 894 (1174)
T KOG0933|consen 875 DQKAKQRDIDTEISGLLTSQ 894 (1174)
T ss_pred HHHHHHHhhhHHHhhhhhHH
Confidence 55555555555554444333
No 23
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.98 E-value=0.00027 Score=83.06 Aligned_cols=28 Identities=29% Similarity=0.281 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002662 245 RSLQRSNTELRKQLESQVLEIDKLRNEN 272 (895)
Q Consensus 245 r~Le~e~~eLr~qLee~~~~i~~lr~Ei 272 (895)
..|+..+.+...+.+++......|+.++
T Consensus 139 ~~lQ~qlE~~qkE~eeL~~~~~~Le~e~ 166 (546)
T PF07888_consen 139 QLLQNQLEECQKEKEELLKENEQLEEEV 166 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355555555555555555544454444
No 24
>COG1716 FOG: FHA domain [Signal transduction mechanisms]
Probab=98.97 E-value=1e-09 Score=112.10 Aligned_cols=73 Identities=37% Similarity=0.579 Sum_probs=63.3
Q ss_pred EEecCCceEecCCCCCCceecCCCcccccceEEEEeccCCCCCCCCCCCCceEEEEe-CCCCceeecCccccCCCCcccc
Q 002662 98 ILLTADEHCIGRLVDDAHFQIDSNAVSANHCKIYRKKFASGDLDHSPSGCSSVCLKD-TSTNGTYVNCERFKKNSSEVNI 176 (895)
Q Consensus 98 i~L~~~~~~IGR~~~~~di~i~~~~IS~~Hc~I~~~~~~~~~~~~~~~~~~~~~L~D-~StNGTfVNg~rI~kng~~~~L 176 (895)
+.+....++|||++++ +++|++..|||.||.|++... .+||+| .|+|||||||.++.. ...|
T Consensus 84 ~~~~~~~~tigr~~~~-~i~~~~~~vSR~Ha~l~~~~~-------------~~~~~d~~S~nGt~vn~~~v~~---~~~l 146 (191)
T COG1716 84 IVLGEPVTTIGRDPDN-DIVLDDDVVSRRHAELRREGN-------------EVFLEDLGSTNGTYVNGEKVRQ---RVLL 146 (191)
T ss_pred cccccceEEeccCCCC-CEEcCCCccccceEEEEEeCC-------------ceEEEECCCCcceEECCeEccC---cEEc
Confidence 3344457999999888 999999999999999999764 489999 699999999999985 4788
Q ss_pred CCCCEEEEccC
Q 002662 177 DHGDIISFAAP 187 (895)
Q Consensus 177 ~~GDvIsLg~~ 187 (895)
.+||+|.|+..
T Consensus 147 ~~gd~i~i~~~ 157 (191)
T COG1716 147 QDGDVIRLGGT 157 (191)
T ss_pred CCCCEEEECcc
Confidence 99999999964
No 25
>PRK02224 chromosome segregation protein; Provisional
Probab=98.96 E-value=1.5e-05 Score=100.09 Aligned_cols=22 Identities=18% Similarity=0.134 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhh
Q 002662 539 EEISVLFARQQEQLKAMQKTLE 560 (895)
Q Consensus 539 EEiee~rk~~~~qLr~LQ~~LE 560 (895)
++....+..+..++.+++..++
T Consensus 533 e~~~~~~~~l~~e~~~l~~~~~ 554 (880)
T PRK02224 533 EEKRERAEELRERAAELEAEAE 554 (880)
T ss_pred HhHHHHHHHHHHHHHHHHHHHH
Confidence 3333444445555555555443
No 26
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.95 E-value=1.9e-05 Score=87.42 Aligned_cols=283 Identities=23% Similarity=0.295 Sum_probs=130.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 251 NTELRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKES-------VSISYLHQLKVLRDMLDAKQKELAEISRISAEQK 323 (895)
Q Consensus 251 ~~eLr~qLee~~~~i~~lr~Ei~~i~er~e~El~El~e~-------lrkklE~QL~ELq~kLee~ekeL~el~~~k~kLE 323 (895)
...|...+..++..+..|..+.+.+... +..+... +...|+.++.++...++....+...+.-.+..+.
T Consensus 6 L~~LNdRla~YIekVr~LE~~N~~Le~~----i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~ 81 (312)
T PF00038_consen 6 LQSLNDRLASYIEKVRFLEQENKRLESE----IEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLK 81 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH---------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHH----HHHHHhcccccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHH
Confidence 4445555666666666666665444444 3333333 3456778888888777777777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 002662 324 HEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRRVDRENAEADLKAAVQKSQLETQEKLKRLSDAAS- 402 (895)
Q Consensus 324 sEleEL~~qLee~e~~~aeL~kelkkLe~qI~ELkrqLEeEr~~~~EElEe~~~eLk~qLqkl~~El~eerkk~eee~~- 402 (895)
.++.++..+++.....+..+..++..+. +.++++. .....++..+..|+..|.-+.....+++..+.....
T Consensus 82 ~e~~~~r~k~e~e~~~~~~le~el~~lr-------k~ld~~~-~~r~~le~~i~~L~eEl~fl~~~heeEi~~L~~~~~~ 153 (312)
T PF00038_consen 82 EELEDLRRKYEEELAERKDLEEELESLR-------KDLDEET-LARVDLENQIQSLKEELEFLKQNHEEEIEELREQIQS 153 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTT---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh-------hhhhhhh-hhHhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcccc
Confidence 7777777777777666665555555554 4443332 233334444555544444433333333322211110
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 002662 403 RRELEQQ-EVINKLQIAEKQSSLQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREE 481 (895)
Q Consensus 403 ~~~eEle-e~l~KLeE~EKk~r~elEdLk~kLE~~ra~l~~lEkk~reLEkqLeEEk~~~~~lqkei~elE~EireLeeE 481 (895)
...-+.. .....|....+.++.+.+..-.+ .-..++ .-+..++.+.+.........+..+..++..++..
T Consensus 154 ~~~~e~~~~~~~dL~~~L~eiR~~ye~~~~~------~~~e~e---~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~ 224 (312)
T PF00038_consen 154 SVTVEVDQFRSSDLSAALREIRAQYEEIAQK------NREELE---EWYQSKLEELRQQSEKSSEELESAKEELKELRRQ 224 (312)
T ss_dssp -------------HHHHHHHHHHHHHHHHHH------HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccceeecccccccchhhhhhHHHHHHHHHhh------hhhhhh---hhcccccccccccccccccccchhHhHHHHHHhh
Confidence 0000000 00111222222222222111110 001111 1222233333333333344444444445555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhh
Q 002662 482 LESEKAAREVAWAKVSGLELDILAATRDLDFERRRLKAARERIMLRETQLRAFYSTTEEISVLFARQQEQLKAMQKTLED 561 (895)
Q Consensus 482 LE~ek~e~eel~d~v~~LE~ELeka~r~LE~Ek~rLq~~rErL~~~eqqlkaeiEk~EEiee~rk~~~~qLr~LQ~~LEd 561 (895)
+..+..++..+......|+..|......|..+...++..+..+...+..++..+.... ..|+.|.+....|+-
T Consensus 225 ~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~-------~ey~~Ll~~K~~Ld~ 297 (312)
T PF00038_consen 225 IQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEMARQL-------REYQELLDVKLALDA 297 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
T ss_pred hhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHH-------HHHHHHHHHHHhHHH
Confidence 5555555555555555666666665555665555555555555555555544443333 334455444444433
No 27
>PRK02224 chromosome segregation protein; Provisional
Probab=98.95 E-value=4.2e-05 Score=96.05 Aligned_cols=11 Identities=27% Similarity=0.296 Sum_probs=6.4
Q ss_pred CCcccccCccc
Q 002662 580 ENSRTIVGEKL 590 (895)
Q Consensus 580 rl~~mSgGEKs 590 (895)
.+..||||+|-
T Consensus 778 ~~~~lS~G~~~ 788 (880)
T PRK02224 778 EPEQLSGGERA 788 (880)
T ss_pred ChhhcCccHHH
Confidence 35566666654
No 28
>PRK03918 chromosome segregation protein; Provisional
Probab=98.95 E-value=2.1e-05 Score=98.61 Aligned_cols=78 Identities=22% Similarity=0.311 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 426 VESLKLKLDETRERLVTSDNKVRLLETQVCKEQ-----NVSASWKKRVEELENEIKKLREELESEKAAREVAWAKVSGLE 500 (895)
Q Consensus 426 lEdLk~kLE~~ra~l~~lEkk~reLEkqLeEEk-----~~~~~lqkei~elE~EireLeeELE~ek~e~eel~d~v~~LE 500 (895)
+..+..+++.++..+..+..++..+..++++.. ..+..+...+..+..++.++..++..+...++.+...+..++
T Consensus 621 l~~~~~~l~~~~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~l~~~~~~l~~~l~~l~~~~~~l~~~i~~l~~~i~~~~ 700 (880)
T PRK03918 621 LKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLK 700 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444443 333444444444444444444444444444444444444444
Q ss_pred HHH
Q 002662 501 LDI 503 (895)
Q Consensus 501 ~EL 503 (895)
.++
T Consensus 701 ~~~ 703 (880)
T PRK03918 701 EEL 703 (880)
T ss_pred HHH
Confidence 333
No 29
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.94 E-value=2.8e-05 Score=100.44 Aligned_cols=80 Identities=26% Similarity=0.398 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 002662 283 MKEMKESVSISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLD 362 (895)
Q Consensus 283 l~El~e~lrkklE~QL~ELq~kLee~ekeL~el~~~k~kLEsEleEL~~qLee~e~~~aeL~kelkkLe~qI~ELkrqLE 362 (895)
+..+...+ +.+...+.++...+...+..+..+...+..++.++..+..++..+...+.++...+..++..+..++..+.
T Consensus 690 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 768 (1163)
T COG1196 690 LKSLKNEL-RSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELE 768 (1163)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444 44566666666666666666666666666666666666666666666666655555555555555554443
Q ss_pred H
Q 002662 363 E 363 (895)
Q Consensus 363 e 363 (895)
.
T Consensus 769 ~ 769 (1163)
T COG1196 769 S 769 (1163)
T ss_pred H
Confidence 3
No 30
>COG3456 Predicted component of the type VI protein secretion system, contains a FHA domain [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.93 E-value=1.3e-09 Score=121.85 Aligned_cols=73 Identities=33% Similarity=0.466 Sum_probs=64.0
Q ss_pred EEecCCceEecCCCCCCceecCCC--cccccceEEEEeccCCCCCCCCCCCCceEEEEeCCCCceeecCccccCCCCc-c
Q 002662 98 ILLTADEHCIGRLVDDAHFQIDSN--AVSANHCKIYRKKFASGDLDHSPSGCSSVCLKDTSTNGTYVNCERFKKNSSE-V 174 (895)
Q Consensus 98 i~L~~~~~~IGR~~~~~di~i~~~--~IS~~Hc~I~~~~~~~~~~~~~~~~~~~~~L~D~StNGTfVNg~rI~kng~~-~ 174 (895)
..+.....+|||+++| ++.|+++ .||+.||+|.+... .|||+|.|.|||||||-.+.. +.. .
T Consensus 21 ~~f~~~~g~IGrs~dc-dW~i~D~~~~VS~~Hc~I~~~dg-------------~f~L~DtS~g~l~VNgs~~~~-g~~~~ 85 (430)
T COG3456 21 KLFDRGGGVIGRSPDC-DWQIDDPERFVSKQHCTISYRDG-------------GFCLTDTSNGGLLVNGSDLPL-GEGSA 85 (430)
T ss_pred hhhhcCCcccccCCCC-CccccCcccccchhheEEEecCC-------------eEEEEecCCCceeecccccCC-CCCcc
Confidence 4566788999999998 9999986 89999999998754 499999999999999999887 444 8
Q ss_pred ccCCCCEEEEc
Q 002662 175 NIDHGDIISFA 185 (895)
Q Consensus 175 ~L~~GDvIsLg 185 (895)
+|..||+|.||
T Consensus 86 RLqqGd~i~iG 96 (430)
T COG3456 86 RLQQGDEILIG 96 (430)
T ss_pred ccccCCEEeec
Confidence 99999999998
No 31
>smart00240 FHA Forkhead associated domain. Found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain.
Probab=98.89 E-value=1.9e-09 Score=87.42 Aligned_cols=50 Identities=34% Similarity=0.428 Sum_probs=43.4
Q ss_pred eEecCCC-CCCceecCCCcccccceEEEEeccCCCCCCCCCCCCceEEEEeCC-CCceeecCccc
Q 002662 105 HCIGRLV-DDAHFQIDSNAVSANHCKIYRKKFASGDLDHSPSGCSSVCLKDTS-TNGTYVNCERF 167 (895)
Q Consensus 105 ~~IGR~~-~~~di~i~~~~IS~~Hc~I~~~~~~~~~~~~~~~~~~~~~L~D~S-tNGTfVNg~rI 167 (895)
++|||.+ .| +++|+++.||+.||+|++... ..|||.|.+ +|||||||.+|
T Consensus 1 ~~iGr~~~~~-~i~~~~~~vs~~H~~i~~~~~------------~~~~i~d~~s~~gt~vng~~v 52 (52)
T smart00240 1 VTIGRSSEDC-DIQLPGPSISRRHAEIVYDGG------------GRFYLIDLGSTNGTFVNGKRI 52 (52)
T ss_pred CEeCCCCCCC-CEEeCCCCcchhHcEEEECCC------------CeEEEEECCCCCCeeECCEEC
Confidence 4899999 76 999999999999999998643 149999965 99999999875
No 32
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=98.87 E-value=8.1e-05 Score=92.22 Aligned_cols=69 Identities=13% Similarity=0.222 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 002662 293 SYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQL 361 (895)
Q Consensus 293 klE~QL~ELq~kLee~ekeL~el~~~k~kLEsEleEL~~qLee~e~~~aeL~kelkkLe~qI~ELkrqL 361 (895)
-++.++++...++.+.+.++..+.+.+..++.+++++......+......+....+.+.....++....
T Consensus 491 l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~~~~~kv~~~rk~le~~~~d~~~e~ 559 (1317)
T KOG0612|consen 491 LLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNAADSLEKVNSLRKQLEEAELDMRAES 559 (1317)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhH
Confidence 345555555555555555555555555555555555554444444444444444444444433433333
No 33
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=98.86 E-value=3.9e-05 Score=91.98 Aligned_cols=73 Identities=25% Similarity=0.271 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 002662 291 SISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDE 363 (895)
Q Consensus 291 rkklE~QL~ELq~kLee~ekeL~el~~~k~kLEsEleEL~~qLee~e~~~aeL~kelkkLe~qI~ELkrqLEe 363 (895)
+.++..+..+|+.+|...+++..++.+.+.++..++.++...++-+.-...=++.....|+.++.-++..+++
T Consensus 271 kSkim~qqa~Lqrel~raR~e~keaqe~ke~~k~emad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~de 343 (1243)
T KOG0971|consen 271 KSKIMEQQADLQRELKRARKEAKEAQEAKERYKEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDE 343 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888888999999999899999999999888888887766665555555556666666666655444
No 34
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.84 E-value=0.00011 Score=96.16 Aligned_cols=45 Identities=4% Similarity=0.003 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHhhhhhhhhhhcc
Q 002662 523 RIMLRETQLRAFY--STTEEISVLFARQQEQLKAMQKTLEDEENYEN 567 (895)
Q Consensus 523 rL~~~eqqlkaei--Ek~EEiee~rk~~~~qLr~LQ~~LEdeek~~s 567 (895)
+|+..+.+++.++ ..+..++.++++..-++.......+|-.+|..
T Consensus 1079 ~le~qi~~l~~eL~e~~yk~a~~ryrka~i~~~~~~~~~~d~~~~~~ 1125 (1311)
T TIGR00606 1079 GYEKEIKHFKKELREPQFRDAEEKYREMMIVMRTTELVNKDLDIYYK 1125 (1311)
T ss_pred HHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444455 34555566666655555555555555555544
No 35
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.83 E-value=0.00027 Score=83.07 Aligned_cols=33 Identities=27% Similarity=0.357 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 002662 243 DFRSLQRSNTELRKQLESQVLEIDKLRNENRVV 275 (895)
Q Consensus 243 ~Vr~Le~e~~eLr~qLee~~~~i~~lr~Ei~~i 275 (895)
.+....+++.+|......+..+...++.++..+
T Consensus 144 qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l 176 (546)
T PF07888_consen 144 QLEECQKEKEELLKENEQLEEEVEQLREEVERL 176 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555555554333
No 36
>PRK03918 chromosome segregation protein; Provisional
Probab=98.81 E-value=0.0002 Score=89.97 Aligned_cols=10 Identities=20% Similarity=0.408 Sum_probs=4.7
Q ss_pred cccceEEEEe
Q 002662 124 SANHCKIYRK 133 (895)
Q Consensus 124 S~~Hc~I~~~ 133 (895)
.+.+++|.|.
T Consensus 80 ~~~~~~i~R~ 89 (880)
T PRK03918 80 NGRKYRIVRS 89 (880)
T ss_pred CCeEEEEEEE
Confidence 3444555543
No 37
>KOG1881 consensus Anion exchanger adaptor protein Kanadaptin, contains FHA domain [General function prediction only]
Probab=98.77 E-value=1.9e-08 Score=117.94 Aligned_cols=89 Identities=20% Similarity=0.271 Sum_probs=71.4
Q ss_pred CceEecCCCCCCceecCCCcccccceEEEEeccCCCCCCCCCCCCceEEEEe-CCCCceeecCccccCCCCccccCCCCE
Q 002662 103 DEHCIGRLVDDAHFQIDSNAVSANHCKIYRKKFASGDLDHSPSGCSSVCLKD-TSTNGTYVNCERFKKNSSEVNIDHGDI 181 (895)
Q Consensus 103 ~~~~IGR~~~~~di~i~~~~IS~~Hc~I~~~~~~~~~~~~~~~~~~~~~L~D-~StNGTfVNg~rI~kng~~~~L~~GDv 181 (895)
..|+|||...| |+.+.+|.|||.||.|.+... +.++.. .+...-|||.| +||.|||+|.+|+.+ ..+..++.|++
T Consensus 177 ~~~~fgr~~~c-D~~~eHpsISr~h~vlQy~~~-~~~~p~-~s~~~g~~i~dlgsThgt~~NK~rvpp-k~yir~~Vg~v 252 (793)
T KOG1881|consen 177 AACLFGRLGGC-DVALEHPSISRFHAVLQYKAS-GPDDPC-ASNGEGWYIYDLGSTHGTFLNKDRVPP-KVYIRDRVGHV 252 (793)
T ss_pred eeEEecccCCC-ccccccCcccccceeeeccCC-CCCccc-cCCCCceEEeeccccccceeccccCCC-cchhhhhHHHH
Confidence 45899999988 999999999999999998764 333211 12344599999 699999999999999 77888899999
Q ss_pred EEEccCCCCCccEEEEEcc
Q 002662 182 ISFAAPPQHDLAFAFVFRD 200 (895)
Q Consensus 182 IsLg~~p~~e~af~FVF~d 200 (895)
+.||.. .+.|+|.-
T Consensus 253 ~~fggs-----Trl~i~Qg 266 (793)
T KOG1881|consen 253 ARFGGS-----TRLYIFQG 266 (793)
T ss_pred HHhcCc-----eEEEEeeC
Confidence 999964 36677743
No 38
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=98.70 E-value=8.6e-05 Score=91.64 Aligned_cols=14 Identities=14% Similarity=0.060 Sum_probs=11.7
Q ss_pred CCcccccCcccccc
Q 002662 580 ENSRTIVGEKLPNG 593 (895)
Q Consensus 580 rl~~mSgGEKs~~~ 593 (895)
.+-+|||||+|-..
T Consensus 986 d~~gLSGGERSFsT 999 (1074)
T KOG0250|consen 986 DTRGLSGGERSFST 999 (1074)
T ss_pred cccccCcccchHHH
Confidence 68899999999543
No 39
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.66 E-value=0.00038 Score=91.23 Aligned_cols=17 Identities=12% Similarity=-0.052 Sum_probs=10.8
Q ss_pred CCcccccchhHHHhhhh
Q 002662 795 APTKWSHDRQALCEMIG 811 (895)
Q Consensus 795 ~~~~~~~~~~~~~~~~~ 811 (895)
...-++|+...+..+..
T Consensus 1262 ~viiitHd~~~~~~~~~ 1278 (1311)
T TIGR00606 1262 QLLVITHDEDFVELLGR 1278 (1311)
T ss_pred eEEEEecCHHHHHHHhh
Confidence 34556777777766654
No 40
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=98.65 E-value=0.00026 Score=83.14 Aligned_cols=146 Identities=20% Similarity=0.277 Sum_probs=106.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 248 QRSNTELRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKESV-------SISYLHQLKVLRDMLDAKQKELAEISRISA 320 (895)
Q Consensus 248 e~e~~eLr~qLee~~~~i~~lr~Ei~~i~er~e~El~El~e~l-------rkklE~QL~ELq~kLee~ekeL~el~~~k~ 320 (895)
..++..|..+|..+++.+.-|+.+.+.+.-. +..++... .-.|+..+..+..-+++..+.+..+...+.
T Consensus 41 K~El~~LNDRLA~YIekVR~LEaqN~~L~~d----i~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~ 116 (546)
T KOG0977|consen 41 KKELQELNDRLAVYIEKVRFLEAQNRKLEHD----INLLRGVVGRETSGIKAKYEAELATARKLLDETARERAKLEIEIT 116 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888889999988888887655444 66666554 357889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 321 EQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRRVDRENAEADLKAAVQKSQLETQEKLKRLS 398 (895)
Q Consensus 321 kLEsEleEL~~qLee~e~~~aeL~kelkkLe~qI~ELkrqLEeEr~~~~EElEe~~~eLk~qLqkl~~El~eerkk~e 398 (895)
+|+.++.+|..++......+......+......+.+++.++.--+ .+...++..+..|+.++.++..++...++...
T Consensus 117 kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~k-rr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld 193 (546)
T KOG0977|consen 117 KLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLK-RRIKALEDELKRLKAENSRLREELARARKQLD 193 (546)
T ss_pred HhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHH-HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 999999999999988888887777777766666666665443322 23444555566666666666666666555444
No 41
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=98.64 E-value=0.00047 Score=82.02 Aligned_cols=67 Identities=18% Similarity=0.205 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 427 ESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAREVAW 493 (895)
Q Consensus 427 EdLk~kLE~~ra~l~~lEkk~reLEkqLeEEk~~~~~lqkei~elE~EireLeeELE~ek~e~eel~ 493 (895)
+-++..-..++++.+.++.--+.++.++.+|+++.+.+..++...+-.++.++++|+.+++.+..+.
T Consensus 245 tp~rk~~s~i~E~d~~lq~sak~ieE~m~qlk~kns~L~~ElSqkeelVk~~qeeLd~lkqt~t~a~ 311 (1265)
T KOG0976|consen 245 TPLRKTCSMIEEQDMDLQASAKEIEEKMRQLKAKNSVLGDELSQKEELVKELQEELDTLKQTRTRAD 311 (1265)
T ss_pred hhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444444456777777777777888888888888888889999999999999999999887554443
No 42
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.58 E-value=0.0001 Score=79.14 Aligned_cols=209 Identities=17% Similarity=0.266 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 002662 293 SYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRRVDR 372 (895)
Q Consensus 293 klE~QL~ELq~kLee~ekeL~el~~~k~kLEsEleEL~~qLee~e~~~aeL~kelkkLe~qI~ELkrqLEeEr~~~~EEl 372 (895)
.+..++..+..++..++..+........+.+.++..|+.++..++..+..+...+......+.++...+++.... +..+
T Consensus 5 ~l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~-~k~l 83 (237)
T PF00261_consen 5 QLKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERA-RKVL 83 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHH-HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 344445555555555555555555556666666666666666665555555555555555555555444442211 1112
Q ss_pred HHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 373 ENA-------EADLKAAVQKSQLETQEKLKRLSDAASRRELEQQEVINKLQIAEKQSSLQVESLKLKLDETRERLVTSDN 445 (895)
Q Consensus 373 Ee~-------~~eLk~qLqkl~~El~eerkk~eee~~~~~eElee~l~KLeE~EKk~r~elEdLk~kLE~~ra~l~~lEk 445 (895)
+++ +..|..++..+...+.+--.++. +....+ ..+...++.+..+++.....+..|+.
T Consensus 84 E~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~-E~~rkl--------------~~~E~~Le~aEeR~e~~E~ki~eLE~ 148 (237)
T PF00261_consen 84 ENREQSDEERIEELEQQLKEAKRRAEEAERKYE-EVERKL--------------KVLEQELERAEERAEAAESKIKELEE 148 (237)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH-HCHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH--------------HHHHHHHHHHHHHHhhhchhHHHHHH
Confidence 222 22222222222221111111111 111111 11222233344444444444444444
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 002662 446 KVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAREVAWAKVSGLELDILAATRDLDFERRRL 517 (895)
Q Consensus 446 k~reLEkqLeEEk~~~~~lqkei~elE~EireLeeELE~ek~e~eel~d~v~~LE~ELeka~r~LE~Ek~rL 517 (895)
.++.+...|........++..+...++.+|+.|...|.......+.+...+..|+.++......|+..+..+
T Consensus 149 el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~ 220 (237)
T PF00261_consen 149 ELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKY 220 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444455556666666666666666666666666666666666665555555554444
No 43
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=98.58 E-value=0.0022 Score=83.45 Aligned_cols=45 Identities=22% Similarity=0.360 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 002662 318 ISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLD 362 (895)
Q Consensus 318 ~k~kLEsEleEL~~qLee~e~~~aeL~kelkkLe~qI~ELkrqLE 362 (895)
....|+.++..+..+|..+.....++++.++.....+..+++.+.
T Consensus 601 ~ee~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~ 645 (1201)
T PF12128_consen 601 SEEELRERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREIT 645 (1201)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555666666666666666666666666655555555554443
No 44
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=98.57 E-value=0.0021 Score=79.20 Aligned_cols=204 Identities=16% Similarity=0.228 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-----
Q 002662 293 SYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNL----- 367 (895)
Q Consensus 293 klE~QL~ELq~kLee~ekeL~el~~~k~kLEsEleEL~~qLee~e~~~aeL~kelkkLe~qI~ELkrqLEeEr~~----- 367 (895)
.+..+..+++..++.+...+.........|++++..|..+|+.....+....+.+..++.++.-+...|.+-++.
T Consensus 312 ~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e 391 (775)
T PF10174_consen 312 TLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKE 391 (775)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666777777777777777777777777777777777776666655555555554444444444332211
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Q 002662 368 -RRVDRENAEADLKAAVQKSQLETQEKLKRLS------------DAASRRELEQQEVINKLQIA----EKQSSLQVESLK 430 (895)
Q Consensus 368 -~~EElEe~~~eLk~qLqkl~~El~eerkk~e------------ee~~~~~eElee~l~KLeE~----EKk~r~elEdLk 430 (895)
....+...++.|...+..-..++...+.++. ..+...+.+.+..+..|.+. ++....+++.++
T Consensus 392 ~ki~~Lq~kie~Lee~l~ekd~ql~~~k~Rl~~~~d~~~~~~~~~~lEea~~eker~~e~l~e~r~~~e~e~~Eele~~~ 471 (775)
T PF10174_consen 392 RKINVLQKKIENLEEQLREKDRQLDEEKERLSSQADSSNEDEALETLEEALREKERLQERLEEQRERAEKERQEELETYQ 471 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111222222232222211111111111111 11112222222222222211 234445566777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 431 LKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAREVAWAKV 496 (895)
Q Consensus 431 ~kLE~~ra~l~~lEkk~reLEkqLeEEk~~~~~lqkei~elE~EireLeeELE~ek~e~eel~d~v 496 (895)
.++..++..+..|+.++......+...+.....+.........+|..|.-.+++.+-.+.++...+
T Consensus 472 ~e~~~lk~~~~~LQ~eLsEk~~~l~~~kee~s~l~s~~~K~~s~i~~l~I~lEk~rek~~kl~~ql 537 (775)
T PF10174_consen 472 KELKELKAKLESLQKELSEKELQLEDAKEEASKLASSQEKKDSEIERLEIELEKKREKHEKLEKQL 537 (775)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHhhccchhhhHHHHHHHHHHHhhhHHHHHHHHH
Confidence 777777777777776666666666655554444433333333444444444444444444333333
No 45
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.56 E-value=0.00014 Score=78.08 Aligned_cols=72 Identities=29% Similarity=0.402 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 425 QVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAREVAWAKV 496 (895)
Q Consensus 425 elEdLk~kLE~~ra~l~~lEkk~reLEkqLeEEk~~~~~lqkei~elE~EireLeeELE~ek~e~eel~d~v 496 (895)
.+..+....+........++.+++.|..++.+-......+...+..++.++..|+.+|...+..+..+.+-+
T Consensus 156 ~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~el 227 (237)
T PF00261_consen 156 NLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEEL 227 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333334444445555555555554333333455555555555555555555555444443333
No 46
>PRK04863 mukB cell division protein MukB; Provisional
Probab=98.55 E-value=0.0052 Score=80.77 Aligned_cols=39 Identities=23% Similarity=0.323 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 466 KRVEELENEIKKLREELESEKAAREVAWAKVSGLELDIL 504 (895)
Q Consensus 466 kei~elE~EireLeeELE~ek~e~eel~d~v~~LE~ELe 504 (895)
.-..+.+.++..+..++......+..+..+...|..+|.
T Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~qL~~~i~ 596 (1486)
T PRK04863 558 QLQEELEARLESLSESVSEARERRMALRQQLEQLQARIQ 596 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444445544444444
No 47
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.55 E-value=0.00076 Score=80.22 Aligned_cols=23 Identities=17% Similarity=0.458 Sum_probs=10.9
Q ss_pred CCHHHHHH--HHHHHHHHHHHHHHH
Q 002662 239 LSLDDFRS--LQRSNTELRKQLESQ 261 (895)
Q Consensus 239 ~~ld~Vr~--Le~e~~eLr~qLee~ 261 (895)
+.+++-|. |++=+.+|..+...+
T Consensus 312 ~TFEDKrkeNy~kGqaELerRRq~l 336 (1118)
T KOG1029|consen 312 VTFEDKRKENYEKGQAELERRRQAL 336 (1118)
T ss_pred cchhhhhHHhHhhhhHHHHHHHHHH
Confidence 44555443 444455555444444
No 48
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=98.54 E-value=0.00075 Score=82.43 Aligned_cols=159 Identities=13% Similarity=0.136 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 430 KLKLDETRERLVTSDNKVRLLETQVCK--EQNVSASWKKRVEELENEIKKLREELESEKAAREVAWAKVSGLELDILAAT 507 (895)
Q Consensus 430 k~kLE~~ra~l~~lEkk~reLEkqLeE--Ek~~~~~lqkei~elE~EireLeeELE~ek~e~eel~d~v~~LE~ELeka~ 507 (895)
+..+..+...+..++.++..+.++|.. ....+..+..++..++.++.+++.++......+..+...+..+++++.+..
T Consensus 390 ~~~~~~~~~~~~~~e~el~~l~~~l~~~~~~e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 469 (650)
T TIGR03185 390 QDAKSQLLKELRELEEELAEVDKKISTIPSEEQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLDEKT 469 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555566666666666666654 223555666667777777777777777777766666666666666665432
Q ss_pred hhHHHHHHHHHHH---HHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHh---hhhh-hhhhhcccccccccCCCC
Q 002662 508 RDLDFERRRLKAA---RERIMLRETQLRAFY--STTEEISVLFARQQEQLKAMQ---KTLE-DEENYENTSVDIDLCVPD 578 (895)
Q Consensus 508 r~LE~Ek~rLq~~---rErL~~~eqqlkaei--Ek~EEiee~rk~~~~qLr~LQ---~~LE-deek~~s~~lelDl~p~e 578 (895)
..... ...+... .+++...+..++..+ .....++..+...|.+|.... ..+. +.+++.-.++. +-+
T Consensus 470 ~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~le~~~~~~f~~l~~k~~~~~~v~id~~~~~~~l~~----~~g 544 (650)
T TIGR03185 470 KQKIN-AFELERAITIADKAKKTLKEFREKLLERKLQQLEEEITKSFKKLMRKHNLISRLKIDPETFAVSLYD----NNG 544 (650)
T ss_pred HHHHh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCceeEEEEcCCceeEEEEc----CCC
Confidence 22111 1111111 123333333332222 334445555556666664321 1121 11222222221 112
Q ss_pred C--CCcccccCcccccc
Q 002662 579 G--ENSRTIVGEKLPNG 593 (895)
Q Consensus 579 k--rl~~mSgGEKs~~~ 593 (895)
. .+..||||||..+.
T Consensus 545 ~~~~~~~lS~Ge~~~~~ 561 (650)
T TIGR03185 545 KHIDKERLSAGERQILA 561 (650)
T ss_pred CCcCCCCCCHHHHHHHH
Confidence 2 67889999988754
No 49
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.50 E-value=0.0012 Score=80.38 Aligned_cols=93 Identities=14% Similarity=0.205 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 278 RHEKEMKEMKESVSISYLHQL-------KVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQ 350 (895)
Q Consensus 278 r~e~El~El~e~lrkklE~QL-------~ELq~kLee~ekeL~el~~~k~kLEsEleEL~~qLee~e~~~aeL~kelkkL 350 (895)
.|..++.++..++-+ ++... ..+...++..+.....+...+.+|++.+..|....+.+.....++.+.+..|
T Consensus 227 iYdrEl~E~~~~l~~-le~~r~~~~e~s~~~~~~~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~l 305 (1200)
T KOG0964|consen 227 IYDRELNEINGELER-LEEDRSSAPEESEQYIDALDKVEDESEDLKCEIKELENKLTNLREEKEQLKARETKISKKKTKL 305 (1200)
T ss_pred hhhhHHHHHHHHHHH-HHHHHhccchhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 455667776666622 22222 2233345555556666777888888888888888888888888888888899
Q ss_pred HHHHHHHHHhHHHHHHHHHHH
Q 002662 351 KVTIDELKTQLDEERNLRRVD 371 (895)
Q Consensus 351 e~qI~ELkrqLEeEr~~~~EE 371 (895)
+-++++|+.++.-+..++...
T Consensus 306 el~~kdlq~~i~~n~q~r~~~ 326 (1200)
T KOG0964|consen 306 ELKIKDLQDQITGNEQQRNLA 326 (1200)
T ss_pred hhhhHHHHHHhhhhhhhhhhH
Confidence 999999999988877655333
No 50
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=98.48 E-value=0.0088 Score=71.69 Aligned_cols=33 Identities=24% Similarity=0.278 Sum_probs=15.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002662 240 SLDDFRSLQRSNTELRKQLESQVLEIDKLRNEN 272 (895)
Q Consensus 240 ~ld~Vr~Le~e~~eLr~qLee~~~~i~~lr~Ei 272 (895)
++..-+.|......|+.++..+...+..|.+.+
T Consensus 83 stqetriyRrdv~llEddlk~~~sQiriLQn~c 115 (1265)
T KOG0976|consen 83 STQETRIYRRDVNLLEDDLKHHESQIRILQNKC 115 (1265)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555554444444444433
No 51
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.48 E-value=0.0006 Score=81.09 Aligned_cols=26 Identities=35% Similarity=0.455 Sum_probs=15.7
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHH
Q 002662 355 DELKTQLDEERNLRRVDRENAEADLK 380 (895)
Q Consensus 355 ~ELkrqLEeEr~~~~EElEe~~~eLk 380 (895)
.+++++-|++++..++..|.+..+|+
T Consensus 381 ReiE~qrEEerkkeie~rEaar~ElE 406 (1118)
T KOG1029|consen 381 REIERQREEERKKEIERREAAREELE 406 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666666666666655555554
No 52
>PRK01156 chromosome segregation protein; Provisional
Probab=98.47 E-value=0.0093 Score=75.51 Aligned_cols=6 Identities=50% Similarity=0.734 Sum_probs=2.9
Q ss_pred cccchh
Q 002662 799 WSHDRQ 804 (895)
Q Consensus 799 ~~~~~~ 804 (895)
+||++.
T Consensus 866 ish~~~ 871 (895)
T PRK01156 866 ISHHRE 871 (895)
T ss_pred EECchH
Confidence 455544
No 53
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.46 E-value=0.0071 Score=75.46 Aligned_cols=31 Identities=13% Similarity=0.214 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002662 242 DDFRSLQRSNTELRKQLESQVLEIDKLRNEN 272 (895)
Q Consensus 242 d~Vr~Le~e~~eLr~qLee~~~~i~~lr~Ei 272 (895)
..|..|..++..|..........++-...+-
T Consensus 267 ~~I~~~~~rv~~L~e~~sek~~~~k~~e~ek 297 (1293)
T KOG0996|consen 267 EPIEELMRRVERLNEDRSEKENRVKLVEKEK 297 (1293)
T ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 3355566666666655555555554444444
No 54
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=98.46 E-value=0.0088 Score=72.13 Aligned_cols=13 Identities=15% Similarity=0.153 Sum_probs=7.0
Q ss_pred cccceeecccccc
Q 002662 214 KRKAEEYVSDNKR 226 (895)
Q Consensus 214 ~eKS~am~G~s~~ 226 (895)
+.|.-.|+|.+..
T Consensus 52 kvk~l~l~Ges~~ 64 (569)
T PRK04778 52 KVKKLNLTGQSEE 64 (569)
T ss_pred HHhcCCCCcccHH
Confidence 4445566666544
No 55
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=98.46 E-value=0.0043 Score=68.42 Aligned_cols=110 Identities=19% Similarity=0.253 Sum_probs=62.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q 002662 240 SLDDFRSLQRSNTELRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKESVSISYLHQLKVLRDMLDAKQKELA-EISRI 318 (895)
Q Consensus 240 ~ld~Vr~Le~e~~eLr~qLee~~~~i~~lr~Ei~~i~er~e~El~El~e~lrkklE~QL~ELq~kLee~ekeL~-el~~~ 318 (895)
...++..|++++..|+.++.......+.|..+++.++.. --.++.+.+-.+..+. .|.++
T Consensus 25 l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~-------------------sv~~~~~aEqEEE~isN~LlKk 85 (310)
T PF09755_consen 25 LRKRIESLQQENRVLKRELETEKARCKHLQEENRALREA-------------------SVRIQAKAEQEEEFISNTLLKK 85 (310)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 456677788888888877777666666666555444333 2223333333344444 36666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 002662 319 SAEQKHEMEDLNDRLSASMQSC-TEANEIMKSQKVTIDELKTQLDEERNLR 368 (895)
Q Consensus 319 k~kLEsEleEL~~qLee~e~~~-aeL~kelkkLe~qI~ELkrqLEeEr~~~ 368 (895)
+..++.+-..|--.++..+..+ ..|.+.+.+|..+-.+|...|+.+....
T Consensus 86 l~~l~keKe~L~~~~e~EEE~ltn~L~rkl~qLr~EK~~lE~~Le~EqE~~ 136 (310)
T PF09755_consen 86 LQQLKKEKETLALKYEQEEEFLTNDLSRKLNQLRQEKVELENQLEQEQEYL 136 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 6666666666655555554433 3566666666655555665555554433
No 56
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=98.43 E-value=0.0071 Score=78.87 Aligned_cols=48 Identities=19% Similarity=0.262 Sum_probs=22.6
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 262 VLEIDKLRNENRVVVERHEKEMKEMKESVSISYLHQLKVLRDMLDAKQ 309 (895)
Q Consensus 262 ~~~i~~lr~Ei~~i~er~e~El~El~e~lrkklE~QL~ELq~kLee~e 309 (895)
...+..++.+....+..+...+..+...++.....++.+++.+.....
T Consensus 401 ~~~~~~~~e~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 448 (1201)
T PF12128_consen 401 QAQQDEIREEKAERREQIEEEYQALEQELRQQSQEQLEELQEQREQLK 448 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444445555555555555555554433444444444433333
No 57
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=98.41 E-value=0.0034 Score=77.49 Aligned_cols=102 Identities=17% Similarity=0.080 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 424 LQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAREVAWAKVSGLELDI 503 (895)
Q Consensus 424 ~elEdLk~kLE~~ra~l~~lEkk~reLEkqLeEEk~~~~~lqkei~elE~EireLeeELE~ek~e~eel~d~v~~LE~EL 503 (895)
..+..++..|.+.++.....|+.....-+++.+....+..++.++.....+.+.+++.....+.+-..+...++.|+..+
T Consensus 1591 ~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~qns~~A~~a~~~a~sa~~~A~~a~q~~~~lq~~~ 1670 (1758)
T KOG0994|consen 1591 RDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEELKHKAAQNSAEAKQAEKTAGSAKEQALSAEQGLEILQKYY 1670 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444443333333333333333333333333344444455555555555555555555555555
Q ss_pred HHHHhhHHHHHHHHHHHHHHHH
Q 002662 504 LAATRDLDFERRRLKAARERIM 525 (895)
Q Consensus 504 eka~r~LE~Ek~rLq~~rErL~ 525 (895)
+...+.++.....-..+++|++
T Consensus 1671 ~~~~~l~~~r~~g~~~ar~rAe 1692 (1758)
T KOG0994|consen 1671 ELVDRLLEKRMEGSQAARERAE 1692 (1758)
T ss_pred HHHHHHHHHHhhcchhHHHHHH
Confidence 5555555444444434444333
No 58
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=98.40 E-value=0.00043 Score=84.55 Aligned_cols=95 Identities=19% Similarity=0.278 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 241 LDDFRSLQRSNTELRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKESVSISYLHQLKVLRDMLDAKQKELAEISRISA 320 (895)
Q Consensus 241 ld~Vr~Le~e~~eLr~qLee~~~~i~~lr~Ei~~i~er~e~El~El~e~lrkklE~QL~ELq~kLee~ekeL~el~~~k~ 320 (895)
-+.+.+|+.++.+|+.+|...+..-..||.++..+..- .+.+..+|..++.+.+.++..+..|...+.
T Consensus 417 ~~a~~rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~------------Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq 484 (697)
T PF09726_consen 417 PDAISRLEADVKKLRAELQSSRQSEQELRSQISSLTNN------------ERSLKSELSQLRQENEQLQNKLQNLVQARQ 484 (697)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhcccc------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36667888888888888777766655555554222111 134555566666666666666665555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 321 EQKHEMEDLNDRLSASMQSCTEANEIM 347 (895)
Q Consensus 321 kLEsEleEL~~qLee~e~~~aeL~kel 347 (895)
+=...+..|+.+|.++......+++++
T Consensus 485 ~DKq~l~~LEkrL~eE~~~R~~lEkQL 511 (697)
T PF09726_consen 485 QDKQSLQQLEKRLAEERRQRASLEKQL 511 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555444444433
No 59
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=98.39 E-value=0.008 Score=74.21 Aligned_cols=70 Identities=16% Similarity=0.182 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 002662 292 ISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQL 361 (895)
Q Consensus 292 kklE~QL~ELq~kLee~ekeL~el~~~k~kLEsEleEL~~qLee~e~~~aeL~kelkkLe~qI~ELkrqL 361 (895)
..|...+..|..+|+.+...+......+.+++.++.-+...|..+...+.-....+..|...|..|...|
T Consensus 339 ~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l 408 (775)
T PF10174_consen 339 EMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQL 408 (775)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777777777777777777655555555555555555554444444444444444444444444333
No 60
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=98.38 E-value=0.012 Score=76.97 Aligned_cols=38 Identities=18% Similarity=0.295 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhhhHHHHHH
Q 002662 241 LDDFRSLQRSNTELRKQ----LESQVLEIDKLRNENRVVVER 278 (895)
Q Consensus 241 ld~Vr~Le~e~~eLr~q----Lee~~~~i~~lr~Ei~~i~er 278 (895)
..+|+.|+.....+..+ +.-+...+..++.++..|+..
T Consensus 635 e~~l~qLe~~le~~~~E~~~~~~~l~e~~~~l~~ev~~ir~~ 676 (1822)
T KOG4674|consen 635 EKRLRQLENELESYKKEKRENLKKLQEDFDSLQKEVTAIRSQ 676 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666665544322 222244555555555555544
No 61
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=98.37 E-value=0.0084 Score=72.57 Aligned_cols=7 Identities=43% Similarity=0.359 Sum_probs=3.8
Q ss_pred hhHHHhh
Q 002662 803 RQALCEM 809 (895)
Q Consensus 803 ~~~~~~~ 809 (895)
-+.|.+|
T Consensus 579 mqLL~ei 585 (617)
T PF15070_consen 579 MQLLQEI 585 (617)
T ss_pred HHHhHhc
Confidence 4556555
No 62
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=98.36 E-value=0.015 Score=69.04 Aligned_cols=47 Identities=19% Similarity=0.180 Sum_probs=22.6
Q ss_pred HHhhHHHHHHH---HHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHH
Q 002662 506 ATRDLDFERRR---LKAARERIMLRETQLRAFY-STTEEISVLFARQQEQL 552 (895)
Q Consensus 506 a~r~LE~Ek~r---Lq~~rErL~~~eqqlkaei-Ek~EEiee~rk~~~~qL 552 (895)
....++.++.| ++.+..++++...+++-.+ ....++-..++.+.++|
T Consensus 716 l~~~le~e~nr~~~~~~e~~~~qeE~~~l~~r~~~le~e~r~~k~~~~q~l 766 (961)
T KOG4673|consen 716 LSKSLEKERNRAAENRQEYLAAQEEADTLEGRANQLEVEIRELKRKHKQEL 766 (961)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555555544 3334446666666665444 33334444444444444
No 63
>PHA02562 46 endonuclease subunit; Provisional
Probab=98.36 E-value=0.0012 Score=78.77 Aligned_cols=15 Identities=20% Similarity=0.023 Sum_probs=11.5
Q ss_pred CCcccccCccccccc
Q 002662 580 ENSRTIVGEKLPNGH 594 (895)
Q Consensus 580 rl~~mSgGEKs~~~~ 594 (895)
.+..||||||--+..
T Consensus 465 ~~~~lS~Ge~~r~~l 479 (562)
T PHA02562 465 SYASFSQGEKARIDL 479 (562)
T ss_pred ChhhcChhHHHHHHH
Confidence 678999999765544
No 64
>PRK11637 AmiB activator; Provisional
Probab=98.35 E-value=0.00066 Score=78.86 Aligned_cols=25 Identities=28% Similarity=0.282 Sum_probs=14.1
Q ss_pred hhhhhhhhhhhcccccccccCCCCCCC
Q 002662 733 TIRTADLLASEVAGSWACSTAPSVHGE 759 (895)
Q Consensus 733 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 759 (895)
.+..-|.|+. .|+=.++++|.+|=|
T Consensus 388 ~V~~G~~ig~--~g~~g~~~~~~l~fe 412 (428)
T PRK11637 388 QVRAGQPIAL--VGSSGGQGRPSLYFE 412 (428)
T ss_pred EECCCCeEEe--ecCCCCCCCCeEEEE
Confidence 4555555542 244445678877754
No 65
>PRK11637 AmiB activator; Provisional
Probab=98.35 E-value=0.00068 Score=78.76 Aligned_cols=23 Identities=13% Similarity=0.151 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 002662 435 ETRERLVTSDNKVRLLETQVCKE 457 (895)
Q Consensus 435 ~~ra~l~~lEkk~reLEkqLeEE 457 (895)
.+......++.++..|+....+.
T Consensus 195 ~l~~~~~e~~~~k~~L~~~k~e~ 217 (428)
T PRK11637 195 QQKTLLYEQQAQQQKLEQARNER 217 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444
No 66
>PRK04863 mukB cell division protein MukB; Provisional
Probab=98.35 E-value=0.006 Score=80.20 Aligned_cols=42 Identities=14% Similarity=0.188 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 406 LEQQEVINKLQIAEKQSSLQVESLKLKLDETRERLVTSDNKV 447 (895)
Q Consensus 406 eElee~l~KLeE~EKk~r~elEdLk~kLE~~ra~l~~lEkk~ 447 (895)
++|+..+..+......+..++.+++.++..+...+..+.+..
T Consensus 438 EeLe~~LenF~aklee~e~qL~elE~kL~~lea~leql~~~~ 479 (1486)
T PRK04863 438 DNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAY 479 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555555555555554443
No 67
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=98.33 E-value=0.013 Score=76.82 Aligned_cols=275 Identities=18% Similarity=0.216 Sum_probs=120.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 242 DDFRSLQRSNTELRKQLESQVLEIDKLRNENRVVVERHEK-------------EMKEMKESVSISYLHQLKVLRDMLDAK 308 (895)
Q Consensus 242 d~Vr~Le~e~~eLr~qLee~~~~i~~lr~Ei~~i~er~e~-------------El~El~e~lrkklE~QL~ELq~kLee~ 308 (895)
.+++.|+.++..|+.+-.-+..+-.+|..++..+..++.. .+.......+.+++.++.+|...|..+
T Consensus 738 ~k~~~le~ev~~LKqE~~ll~~t~~rL~~e~~~l~~e~~~L~~~l~~lQt~~~~~e~s~~~~k~~~e~~i~eL~~el~~l 817 (1822)
T KOG4674|consen 738 EKLEKLEAELSNLKQEKLLLKETEERLSQELEKLSAEQESLQLLLDNLQTQKNELEESEMATKDKCESRIKELERELQKL 817 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666655555555555555555444333222 222222223345566666666666555
Q ss_pred HHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH----H
Q 002662 309 QKELAE-----------ISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRRVDR----E 373 (895)
Q Consensus 309 ekeL~e-----------l~~~k~kLEsEleEL~~qLee~e~~~aeL~kelkkLe~qI~ELkrqLEeEr~~~~EEl----E 373 (895)
.+.+.. +...+..+.+.+.++...+..+...+..+...+..++..+.+|...|..........- -
T Consensus 818 k~klq~~~~~~r~l~~~~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~k~~eL~k~l~~~~~~~~~l~~~~~~ 897 (1822)
T KOG4674|consen 818 KKKLQEKSSDLRELTNSLEKQLENAQNLVDELESELKSLLTSLDSVSTNIAKLEIKLSELEKRLKSAKTQLLNLDSKSSN 897 (1822)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhccccchh
Confidence 555542 3333334444444444444444444455555555555666666655555332210000 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 374 NAEADLKAAVQKSQLETQEKLKRLSDAASRRELEQQE-----------VINKLQIAEKQSSLQVESLKLKLDETRERLVT 442 (895)
Q Consensus 374 e~~~eLk~qLqkl~~El~eerkk~eee~~~~~eElee-----------~l~KLeE~EKk~r~elEdLk~kLE~~ra~l~~ 442 (895)
.....+...+.....++...+.++. .....++.+.+ ...++.+--..+...++.+..++..++..++.
T Consensus 898 ~d~~~~~~~Lr~~~eq~~~l~~~L~-~a~s~i~~yqe~~~s~eqsl~~~ks~lde~~~~~ea~ie~~~~k~tslE~~ls~ 976 (1822)
T KOG4674|consen 898 EDATILEDTLRKELEEITDLKEELT-DALSQIREYQEEYSSLEQSLESVKSELDETRLELEAKIESLHKKITSLEEELSE 976 (1822)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 0000001111111111111111111 11122222222 22222222223333334444444444444444
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHhhHHHHHH
Q 002662 443 SDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAREVAWAKVSGLELDIL-------AATRDLDFERR 515 (895)
Q Consensus 443 lEkk~reLEkqLeEEk~~~~~lqkei~elE~EireLeeELE~ek~e~eel~d~v~~LE~ELe-------ka~r~LE~Ek~ 515 (895)
|.+++-.|...+ .......+.++..+..++..++.++........++...+..+...+. ++...|+.+.-
T Consensus 977 L~~~~~~l~~e~---~~~~k~~e~~~~~~~~e~~sl~ne~~~~~~~~s~~~~~~~~~k~dl~~~~~~~~~a~~~Ye~el~ 1053 (1822)
T KOG4674|consen 977 LEKEIENLREEL---ELSTKGKEDKLLDLSREISSLQNELKSLLKAASQANEQIEDLQNDLKTETEQLRKAQSKYESELV 1053 (1822)
T ss_pred HHHHHHHHHHHH---hccccchhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444443333222 11122225556666667777777777777766666666666666543 35667776666
Q ss_pred HHHHH
Q 002662 516 RLKAA 520 (895)
Q Consensus 516 rLq~~ 520 (895)
.+...
T Consensus 1054 ~ha~~ 1058 (1822)
T KOG4674|consen 1054 QHADL 1058 (1822)
T ss_pred HHHHH
Confidence 54333
No 68
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=98.32 E-value=0.016 Score=69.90 Aligned_cols=15 Identities=20% Similarity=0.532 Sum_probs=6.8
Q ss_pred HHHHHHHHHhhhhhh
Q 002662 547 RQQEQLKAMQKTLED 561 (895)
Q Consensus 547 ~~~~qLr~LQ~~LEd 561 (895)
.....+..+...|+.
T Consensus 452 ~~~~~i~~l~~~L~~ 466 (569)
T PRK04778 452 EVSDEIEALAEELEE 466 (569)
T ss_pred HHHHHHHHHHHHhcc
Confidence 344444555544433
No 69
>PHA02562 46 endonuclease subunit; Provisional
Probab=98.30 E-value=0.001 Score=79.43 Aligned_cols=59 Identities=15% Similarity=0.132 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 298 LKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDE 356 (895)
Q Consensus 298 L~ELq~kLee~ekeL~el~~~k~kLEsEleEL~~qLee~e~~~aeL~kelkkLe~qI~E 356 (895)
+.+++..++.....+..+..++..++.++.++...+......+..+...+..++..+..
T Consensus 215 i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~~i~~~~~~L~~l~~~~~~~~~~l~~ 273 (562)
T PHA02562 215 IARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQ 273 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444433333333333333333333333333
No 70
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=98.30 E-value=0.0041 Score=77.37 Aligned_cols=21 Identities=14% Similarity=0.268 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 002662 423 SLQVESLKLKLDETRERLVTS 443 (895)
Q Consensus 423 r~elEdLk~kLE~~ra~l~~l 443 (895)
+..+..++..++.++..+..+
T Consensus 364 ~n~i~~~k~~~d~l~k~I~~~ 384 (1074)
T KOG0250|consen 364 ENSIRKLKKEVDRLEKQIADL 384 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 71
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.30 E-value=0.019 Score=67.47 Aligned_cols=107 Identities=10% Similarity=0.158 Sum_probs=42.6
Q ss_pred CHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 240 SLDDF-RSLQRSNTELRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKESVSISYLHQLKVLRDMLDAKQKELAEISRI 318 (895)
Q Consensus 240 ~ld~V-r~Le~e~~eLr~qLee~~~~i~~lr~Ei~~i~er~e~El~El~e~lrkklE~QL~ELq~kLee~ekeL~el~~~ 318 (895)
..+++ ++|++...-+-.+++.+..+...|...|.. +++....++.++++. +.++.-+..+++-+...+.........
T Consensus 218 ~~~Elk~~l~~~~~~i~~~ie~l~~~n~~l~e~i~e-~ek~~~~~eslre~~-~~L~~D~nK~~~y~~~~~~k~~~~~~~ 295 (581)
T KOG0995|consen 218 LEDELKHRLEKYFTSIANEIEDLKKTNRELEEMINE-REKDPGKEESLREKK-ARLQDDVNKFQAYVSQMKSKKQHMEKK 295 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCcchHHHHHHHH-HHHHhHHHHHHHHHHHHHhhhHHHHHH
Confidence 34444 445555555555555555444444444331 111111222222222 223333333333333333333334444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 319 SAEQKHEMEDLNDRLSASMQSCTEANEIMK 348 (895)
Q Consensus 319 k~kLEsEleEL~~qLee~e~~~aeL~kelk 348 (895)
+.+|..+++....+++.+...+++|.+.+.
T Consensus 296 l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie 325 (581)
T KOG0995|consen 296 LEMLKSEIEEKEEEIEKLQKENDELKKQIE 325 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444433
No 72
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=98.29 E-value=0.021 Score=67.83 Aligned_cols=110 Identities=14% Similarity=0.217 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 242 DDFRSLQRSNTELRKQLESQVLEIDK--LRNE---NRVVVERHEKEMKEMKESVSISYLHQLKVLRDMLDAKQKELAEIS 316 (895)
Q Consensus 242 d~Vr~Le~e~~eLr~qLee~~~~i~~--lr~E---i~~i~er~e~El~El~e~lrkklE~QL~ELq~kLee~ekeL~el~ 316 (895)
.+|+.+-++-..|+.++..+..++.. ++.+ ...+....-.+-..+.+++ -.-...++.|.++..+.+..+..+.
T Consensus 416 kKvqa~~kERDalr~e~kslk~ela~~l~~DeLaEkdE~I~~lm~EGEkLSK~q-l~qs~iIkKLRAk~ke~etl~~K~g 494 (961)
T KOG4673|consen 416 KKVQALTKERDALRREQKSLKKELAAALLKDELAEKDEIINQLMAEGEKLSKKQ-LAQSAIIKKLRAKIKEAETLEEKKG 494 (961)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHHhhhhhHHHHHhh
Confidence 57888888888888888866554421 1112 2333333333333343333 2234456666666666666566666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 317 RISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKV 352 (895)
Q Consensus 317 ~~k~kLEsEleEL~~qLee~e~~~aeL~kelkkLe~ 352 (895)
..+.+|+++.+-|..-|...+..-..+...+.++..
T Consensus 495 e~i~~L~sE~~~lk~il~~Kee~Ek~~~E~I~k~~a 530 (961)
T KOG4673|consen 495 ELITKLQSEENKLKSILRDKEETEKLLQETIEKHQA 530 (961)
T ss_pred hHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 677777777766666655544444444444444443
No 73
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=98.28 E-value=0.0049 Score=77.09 Aligned_cols=47 Identities=17% Similarity=0.068 Sum_probs=24.6
Q ss_pred HHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccc
Q 002662 524 IMLRETQLRAFY----STTEEISVLFARQQEQLKAMQKTLEDEENYENTSV 570 (895)
Q Consensus 524 L~~~eqqlkaei----Ek~EEiee~rk~~~~qLr~LQ~~LEdeek~~s~~l 570 (895)
+.....+++.-+ ++........+.....+..||..||.+...+..+-
T Consensus 726 i~~e~e~L~~d~~~~~~~~~~l~r~~~~~~~~vl~Lq~~LEqe~~~r~~~~ 776 (1317)
T KOG0612|consen 726 IEAELEYLSNDYKQSQEKLNELRRSKDQLITEVLKLQSMLEQEISKRLSLQ 776 (1317)
T ss_pred HHHHHHHHhhhhhhhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 333444444333 33333333334444455778888888766665444
No 74
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=98.27 E-value=0.015 Score=72.17 Aligned_cols=69 Identities=14% Similarity=0.222 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 436 TRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAREVAWAKVSGLELDIL 504 (895)
Q Consensus 436 ~ra~l~~lEkk~reLEkqLeEEk~~~~~lqkei~elE~EireLeeELE~ek~e~eel~d~v~~LE~ELe 504 (895)
.+.++...++..+.|+...+.......+-.........+..+|+++..++..+-..-.+.+..|+.++.
T Consensus 1652 a~~~A~~a~q~~~~lq~~~~~~~~l~~~r~~g~~~ar~rAe~L~~eA~~Ll~~a~~kl~~l~dLe~~y~ 1720 (1758)
T KOG0994|consen 1652 AKEQALSAEQGLEILQKYYELVDRLLEKRMEGSQAARERAEQLRTEAEKLLGQANEKLDRLKDLELEYL 1720 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444444444444433333333334444455556666666655555555555555555444
No 75
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=98.25 E-value=0.0047 Score=74.90 Aligned_cols=84 Identities=20% Similarity=0.281 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 252 TELRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKESVSISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLND 331 (895)
Q Consensus 252 ~eLr~qLee~~~~i~~lr~Ei~~i~er~e~El~El~e~lrkklE~QL~ELq~kLee~ekeL~el~~~k~kLEsEleEL~~ 331 (895)
.+|+.|+..+.+++..+|..-..-+.+ |. .|+...-++.++.+=+.++.....+|..
T Consensus 227 ~eLr~QvrdLtEkLetlR~kR~EDk~K-------------------l~----ElekmkiqleqlqEfkSkim~qqa~Lqr 283 (1243)
T KOG0971|consen 227 EELRAQVRDLTEKLETLRLKRAEDKAK-------------------LK----ELEKMKIQLEQLQEFKSKIMEQQADLQR 283 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHH-------------------HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347777776666666665542111111 11 1334444445555556666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 332 RLSASMQSCTEANEIMKSQKVTIDELK 358 (895)
Q Consensus 332 qLee~e~~~aeL~kelkkLe~qI~ELk 358 (895)
+|..+.....++.....++..+|.++.
T Consensus 284 el~raR~e~keaqe~ke~~k~emad~a 310 (1243)
T KOG0971|consen 284 ELKRARKEAKEAQEAKERYKEEMADTA 310 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666666666554
No 76
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=98.24 E-value=0.015 Score=63.88 Aligned_cols=86 Identities=22% Similarity=0.341 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 241 LDDFRSLQRSNTELRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKESVSISYLHQLKVLRDMLDAKQKELAEISRISA 320 (895)
Q Consensus 241 ld~Vr~Le~e~~eLr~qLee~~~~i~~lr~Ei~~i~er~e~El~El~e~lrkklE~QL~ELq~kLee~ekeL~el~~~k~ 320 (895)
+..+..++.+...|+..+..+....+.++.+++..+++ +. .+-.++.++..++.....++.++..++.
T Consensus 5 ~~~~~E~e~K~~~lk~~~~e~~ekR~El~~~~~~~~ek----Rd--------eln~kvrE~~e~~~elr~~rdeineev~ 72 (294)
T COG1340 5 LDKLDELELKRKQLKEEIEELKEKRDELRKEASELAEK----RD--------ELNAKVRELREKAQELREERDEINEEVQ 72 (294)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555444433344333332222 22 2333344444444455555555555555
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 002662 321 EQKHEMEDLNDRLSASMQ 338 (895)
Q Consensus 321 kLEsEleEL~~qLee~e~ 338 (895)
++.....+++..+..+-.
T Consensus 73 elK~kR~ein~kl~eL~~ 90 (294)
T COG1340 73 ELKEKRDEINAKLQELRK 90 (294)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555555555555554333
No 77
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=98.16 E-value=0.039 Score=65.51 Aligned_cols=110 Identities=23% Similarity=0.331 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------hHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH
Q 002662 423 SLQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQN--------VSASWKKRVEELENEIKKLREELESEKA----ARE 490 (895)
Q Consensus 423 r~elEdLk~kLE~~ra~l~~lEkk~reLEkqLeEEk~--------~~~~lqkei~elE~EireLeeELE~ek~----e~e 490 (895)
..++.-+..+|+..+..+..++++...|..++..... .+.+....+..++..|.+|..+++.++. +++
T Consensus 234 ~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~e 313 (629)
T KOG0963|consen 234 AAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANSSKKLAKIDDIDALGSVLNQKDSEIAQLSNDIERLEASLVEERE 313 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446677788888888888888888888777765322 1223344555677778888888877766 556
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHH--HHHHHHHHHHHH
Q 002662 491 VAWAKVSGLELDILAATRDLDFERRRLKAA--RERIMLRETQLR 532 (895)
Q Consensus 491 el~d~v~~LE~ELeka~r~LE~Ek~rLq~~--rErL~~~eqqlk 532 (895)
.....|..|++++.+++..++.-+..|+.. .+.|...+.-++
T Consensus 314 ~~~~qI~~le~~l~~~~~~leel~~kL~~~sDYeeIK~ELsiLk 357 (629)
T KOG0963|consen 314 KHKAQISALEKELKAKISELEELKEKLNSRSDYEEIKKELSILK 357 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHH
Confidence 666777778888888777777777766554 345555555554
No 78
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.14 E-value=0.041 Score=64.82 Aligned_cols=20 Identities=20% Similarity=0.562 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 002662 242 DDFRSLQRSNTELRKQLESQ 261 (895)
Q Consensus 242 d~Vr~Le~e~~eLr~qLee~ 261 (895)
.++..|+..+.+|..++.+.
T Consensus 235 ~~ie~l~~~n~~l~e~i~e~ 254 (581)
T KOG0995|consen 235 NEIEDLKKTNRELEEMINER 254 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55666777777777776644
No 79
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=98.06 E-value=0.08 Score=65.54 Aligned_cols=43 Identities=14% Similarity=0.233 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 294 YLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSAS 336 (895)
Q Consensus 294 lE~QL~ELq~kLee~ekeL~el~~~k~kLEsEleEL~~qLee~ 336 (895)
+..++..++...+-.++++++|......|+.+-..|..+++-.
T Consensus 306 lkqkl~dm~~erdtdr~kteeL~eEnstLq~q~eqL~~~~ell 348 (1195)
T KOG4643|consen 306 LKQKLDDMRSERDTDRHKTEELHEENSTLQVQKEQLDGQMELL 348 (1195)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhHh
Confidence 4444444444444445555555555555555554554444433
No 80
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=98.06 E-value=0.063 Score=64.26 Aligned_cols=70 Identities=21% Similarity=0.311 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 420 KQSSLQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAR 489 (895)
Q Consensus 420 Kk~r~elEdLk~kLE~~ra~l~~lEkk~reLEkqLeEEk~~~~~lqkei~elE~EireLeeELE~ek~e~ 489 (895)
.....+|+.++..|.....-+..+......|...|...+..+..++.+.......+..|..+|...+.++
T Consensus 284 ~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eL 353 (522)
T PF05701_consen 284 ASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSEL 353 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHH
Confidence 3444445555555555555555555555555555555555555555544444444444444444444433
No 81
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=98.00 E-value=0.024 Score=65.09 Aligned_cols=61 Identities=15% Similarity=0.262 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002662 300 VLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQ 360 (895)
Q Consensus 300 ELq~kLee~ekeL~el~~~k~kLEsEleEL~~qLee~e~~~aeL~kelkkLe~qI~ELkrq 360 (895)
.++..++..++.+.....+..+|+.+|.+++..+..++..+.+....++++++.|.++...
T Consensus 42 q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~ 102 (420)
T COG4942 42 QIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNAR 102 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHH
Confidence 3333333444444444444444444444444444444444444444444444444444433
No 82
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=97.93 E-value=0.12 Score=66.32 Aligned_cols=40 Identities=13% Similarity=0.101 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhh
Q 002662 520 ARERIMLRETQLRAFYSTTEEISVLFARQQEQLKAMQKTL 559 (895)
Q Consensus 520 ~rErL~~~eqqlkaeiEk~EEiee~rk~~~~qLr~LQ~~L 559 (895)
.++-|....+.+.+++...-.+.-..+.....+.+++..|
T Consensus 388 rr~LL~~L~~~~~~~l~~l~~L~~~q~QL~~~~~~l~~~L 427 (1109)
T PRK10929 388 QRELLNSLLSGGDTLILELTKLKVANSQLEDALKEVNEAT 427 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555666555555544444444555555444
No 83
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=97.92 E-value=0.11 Score=62.26 Aligned_cols=13 Identities=8% Similarity=0.054 Sum_probs=7.0
Q ss_pred cccceeecccccc
Q 002662 214 KRKAEEYVSDNKR 226 (895)
Q Consensus 214 ~eKS~am~G~s~~ 226 (895)
+.-++++=||++.
T Consensus 7 Vk~Avs~FG~~~~ 19 (522)
T PF05701_consen 7 VKEAVSLFGGSID 19 (522)
T ss_pred HHHHHHHcCCccc
Confidence 3445666666553
No 84
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=97.92 E-value=0.11 Score=62.27 Aligned_cols=68 Identities=22% Similarity=0.294 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Q 002662 246 SLQRSNTELRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKESVS--ISYLHQLKVLRDMLDAKQKELA 313 (895)
Q Consensus 246 ~Le~e~~eLr~qLee~~~~i~~lr~Ei~~i~er~e~El~El~e~lr--kklE~QL~ELq~kLee~ekeL~ 313 (895)
.|+.-+..|..-|......+..+..+++.+.......-.++.+-.. ..-+-+|.+|...|++.++-+.
T Consensus 353 e~qtti~~L~~lL~~Eqqr~~~~ed~lk~l~~eLqkks~eleEmtk~k~~ke~eleeL~~~L~e~qkll~ 422 (786)
T PF05483_consen 353 ELQTTICNLKELLTTEQQRLKKNEDQLKILTMELQKKSSELEEMTKQKNNKEVELEELKKILAEKQKLLD 422 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444333333333221 3344456666666666654333
No 85
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.91 E-value=0.016 Score=71.12 Aligned_cols=58 Identities=17% Similarity=0.303 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 002662 314 EISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRRVD 371 (895)
Q Consensus 314 el~~~k~kLEsEleEL~~qLee~e~~~aeL~kelkkLe~qI~ELkrqLEeEr~~~~EE 371 (895)
.+......|+..+..|..........+..|++.+......-..++.+|.++++.+.++
T Consensus 464 qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL~eErk~r~~e 521 (697)
T PF09726_consen 464 QLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEERRQRASLEKQLQEERKARKEE 521 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 3444444444444444444444444444444444444444444555555555444443
No 86
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=97.90 E-value=0.03 Score=64.30 Aligned_cols=63 Identities=11% Similarity=0.248 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 296 HQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELK 358 (895)
Q Consensus 296 ~QL~ELq~kLee~ekeL~el~~~k~kLEsEleEL~~qLee~e~~~aeL~kelkkLe~qI~ELk 358 (895)
.++..++.++.....++..+...+++++.++..+..+|......+..+.+.+..+...+..|+
T Consensus 45 ~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~ 107 (420)
T COG4942 45 KEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALE 107 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHH
Confidence 333444444444444444444444445555555555544444444444444444444444444
No 87
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=97.90 E-value=0.14 Score=62.86 Aligned_cols=113 Identities=21% Similarity=0.223 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 241 LDDFRSLQRSNTELRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKESVSISYLHQLKVLRDMLDAKQKELAEISRISA 320 (895)
Q Consensus 241 ld~Vr~Le~e~~eLr~qLee~~~~i~~lr~Ei~~i~er~e~El~El~e~lrkklE~QL~ELq~kLee~ekeL~el~~~k~ 320 (895)
..+|..|+.++..++..+.....++++|...+ .++.+.. ..++.+...|+..+.+....=..+.....
T Consensus 33 ~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~-----------~~~~~~~-~~~e~~~~~lr~e~ke~K~rE~rll~dys 100 (717)
T PF09730_consen 33 QQRILELENELKQLRQELSNVQAENERLSQLN-----------QELRKEC-EDLELERKRLREEIKEYKFREARLLQDYS 100 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 34455555555555555555554444444333 2222222 22333333333333333333333444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhHHHHH
Q 002662 321 EQKHEMEDLNDRLSASMQSCT---EANEIMKSQKVTIDELKTQLDEER 365 (895)
Q Consensus 321 kLEsEleEL~~qLee~e~~~a---eL~kelkkLe~qI~ELkrqLEeEr 365 (895)
.|+.++-.|..++..+..... .+.-++++++.++.-|..+|++..
T Consensus 101 elEeENislQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee~~ 148 (717)
T PF09730_consen 101 ELEEENISLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLEEAA 148 (717)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555444444332 333344455555555555555533
No 88
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=97.88 E-value=0.14 Score=62.42 Aligned_cols=198 Identities=16% Similarity=0.172 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 293 SYLHQLKVLRDMLDAKQKELA----------------EISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDE 356 (895)
Q Consensus 293 klE~QL~ELq~kLee~ekeL~----------------el~~~k~kLEsEleEL~~qLee~e~~~aeL~kelkkLe~qI~E 356 (895)
....++.+|...|.+++.++. .+...+..|..+++.|..++...-..+..|...+...+..|.+
T Consensus 47 ~~~~~V~eLE~sL~eLk~q~~~~~~~~~pa~pse~E~~Lq~E~~~L~kElE~L~~qlqaqv~~ne~Ls~L~~EqEerL~E 126 (617)
T PF15070_consen 47 HDISRVQELERSLSELKNQMAEPPPPEPPAGPSEVEQQLQAEAEHLRKELESLEEQLQAQVENNEQLSRLNQEQEERLAE 126 (617)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666666555544 2666677777888888888777766667776666666777777
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 357 LKTQLDEERNLRRVDRENAEADLKAAVQKSQLETQEKLKRLSDAASRRELEQQEVINKLQIAEKQSSLQVESLKLKLDET 436 (895)
Q Consensus 357 LkrqLEeEr~~~~EElEe~~~eLk~qLqkl~~El~eerkk~eee~~~~~eElee~l~KLeE~EKk~r~elEdLk~kLE~~ 436 (895)
|++.|+.-.... .+. .++-..++.++.-+. .+..+..+|...+..|++..-++..+--+++..|...
T Consensus 127 LE~~le~~~e~~--------~D~----~kLLe~lqsdk~t~S-RAlsQN~eLK~QL~Elq~~Fv~ltne~~elt~~lq~E 193 (617)
T PF15070_consen 127 LEEELERLQEQQ--------EDR----QKLLEQLQSDKATAS-RALSQNRELKEQLAELQDAFVKLTNENMELTSALQSE 193 (617)
T ss_pred HHHHHHHHHHHH--------HHH----HHHHhhhcccchHHH-HHHHhHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHH
Confidence 765554422111 111 111112222222222 2333444444444444444444443333344444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 437 RERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAREVAWAKVSGLELDI 503 (895)
Q Consensus 437 ra~l~~lEkk~reLEkqLeEEk~~~~~lqkei~elE~EireLeeELE~ek~e~eel~d~v~~LE~EL 503 (895)
+-....|.+++..+...+..++..+..-..++..++.+-..+-..|..+...|+.+..-...|.+++
T Consensus 194 q~~~keL~~kl~~l~~~l~~~~e~le~K~qE~~~Lq~q~dq~~~~Lqqy~a~~q~l~~e~e~L~~q~ 260 (617)
T PF15070_consen 194 QHVKKELQKKLGELQEKLHNLKEKLELKSQEAQSLQEQRDQYLGHLQQYVAAYQQLASEKEELHKQL 260 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444443332222223333333333333344445555555555555555443
No 89
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=97.83 E-value=0.2 Score=62.30 Aligned_cols=37 Identities=24% Similarity=0.346 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 002662 242 DDFRSLQRSNTELRKQLESQVLEIDKLRNENRVVVER 278 (895)
Q Consensus 242 d~Vr~Le~e~~eLr~qLee~~~~i~~lr~Ei~~i~er 278 (895)
..+..|+..+..|+.++++.-+-+-.++.++..+..+
T Consensus 177 velAdle~kir~LrqElEEK~enll~lr~eLddleae 213 (1195)
T KOG4643|consen 177 VELADLEKKIRTLRQELEEKFENLLRLRNELDDLEAE 213 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677777777777777766555555555444333
No 90
>PRK11281 hypothetical protein; Provisional
Probab=97.81 E-value=0.18 Score=65.08 Aligned_cols=52 Identities=21% Similarity=0.160 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 293 SYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEAN 344 (895)
Q Consensus 293 klE~QL~ELq~kLee~ekeL~el~~~k~kLEsEleEL~~qLee~e~~~aeL~ 344 (895)
.++.++.++...|...+..+++++.++..+++..+....++.+...+..++.
T Consensus 125 qLEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~ 176 (1113)
T PRK11281 125 QLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIR 176 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHH
Confidence 3555555555555555555555444444444444444444444444444333
No 91
>KOG0245 consensus Kinesin-like protein [Cytoskeleton]
Probab=97.79 E-value=0.0027 Score=78.08 Aligned_cols=101 Identities=17% Similarity=0.268 Sum_probs=72.3
Q ss_pred ceEEEEeecccccccCcceeEEecCCceEecCCCCC--CceecCCCcccccceEEEEeccCCCCCCCCCCCCceEEEEeC
Q 002662 78 VWGVLTAISNNARKRHQGINILLTADEHCIGRLVDD--AHFQIDSNAVSANHCKIYRKKFASGDLDHSPSGCSSVCLKDT 155 (895)
Q Consensus 78 ~WG~L~~i~~~~~~r~~g~~i~L~~~~~~IGR~~~~--~di~i~~~~IS~~Hc~I~~~~~~~~~~~~~~~~~~~~~L~D~ 155 (895)
.-..||-+..+.. -....-+.|.....+|||.+.. .||+++...|=-.||.|.-.+. ..++..-.
T Consensus 453 k~phLVNLneDPl-lSe~LlY~ikeG~TrVG~~~a~~~~DI~LsG~~I~~qHC~i~~~~g------------~~~vtl~p 519 (1221)
T KOG0245|consen 453 KTPHLVNLNEDPL-LSECLLYYIKEGETRVGREDASSRQDIVLSGQLIREQHCSIRNEGG------------NDVVTLEP 519 (1221)
T ss_pred cCcceeccCCCch-hhccEEEEeccCceecCCCCcccCCceEecchhhhhhceEEEecCC------------CceEEecc
Confidence 3456666665432 1223345667788999998654 4899999999999999987653 12444455
Q ss_pred CCC-ceeecCccccCCCCccccCCCCEEEEccCCCCCccEEEEEcc
Q 002662 156 STN-GTYVNCERFKKNSSEVNIDHGDIISFAAPPQHDLAFAFVFRD 200 (895)
Q Consensus 156 StN-GTfVNg~rI~kng~~~~L~~GDvIsLg~~p~~e~af~FVF~d 200 (895)
+-+ -|||||+.|.- +..|++||+|-||.. -.|.|.+
T Consensus 520 ~e~aetyVNGk~v~e---p~qL~~GdRiilG~~------H~frfn~ 556 (1221)
T KOG0245|consen 520 CEDAETYVNGKLVTE---PTQLRSGDRIILGGN------HVFRFNH 556 (1221)
T ss_pred CCccceeEccEEcCC---cceeccCCEEEEcCc------eeEEecC
Confidence 655 89999999976 689999999999963 3466654
No 92
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=97.78 E-value=0.18 Score=60.18 Aligned_cols=53 Identities=19% Similarity=0.251 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 002662 315 ISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNL 367 (895)
Q Consensus 315 l~~~k~kLEsEleEL~~qLee~e~~~aeL~kelkkLe~qI~ELkrqLEeEr~~ 367 (895)
...+-+.|..+...++.++..++..+..+...+.....++-+++...+++...
T Consensus 180 ~~e~e~~L~~~~~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~ 232 (629)
T KOG0963|consen 180 WAEREAGLKDEEQNLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAA 232 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHH
Confidence 33444445555555666666666666666655555555555555554444433
No 93
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=97.76 E-value=0.15 Score=61.76 Aligned_cols=74 Identities=14% Similarity=0.187 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 426 VESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAREVAWAKVSGLELDIL 504 (895)
Q Consensus 426 lEdLk~kLE~~ra~l~~lEkk~reLEkqLeEEk~~~~~lqkei~elE~EireLeeELE~ek~e~eel~d~v~~LE~ELe 504 (895)
+..++.++......+...+...++|...++..... ..+..+-.+|.++-.-+.+.+.++.++..-.+.|+++|.
T Consensus 449 ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~-----~~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN 522 (594)
T PF05667_consen 449 IKELREEIKEIEEEIRQKEELYKQLVKELEKLPKD-----VNRSAYTRRILEIVKNIRKQKEEIEKILSDTRELQKEIN 522 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-----CCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444442111 113334444444444444444555555555555555554
No 94
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.74 E-value=0.05 Score=67.83 Aligned_cols=69 Identities=14% Similarity=0.220 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 437 RERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAREVAWAKVSGLELDILA 505 (895)
Q Consensus 437 ra~l~~lEkk~reLEkqLeEEk~~~~~lqkei~elE~EireLeeELE~ek~e~eel~d~v~~LE~ELek 505 (895)
.+....++.+++.+...+.+.......+...+..+...+.++.+++..+...+..+......+..+|..
T Consensus 401 ~~~~~elE~r~k~l~~sver~~~~~~~L~~~i~s~~~~~~e~~~d~~~l~~~~~~~~~~~~e~n~eL~~ 469 (1141)
T KOG0018|consen 401 LERRAELEARIKQLKESVERLDKRRNKLAAKITSLSRSYEELKHDLDSLESLVSSAEEEPYELNEELVE 469 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 334444455555555555444444444455555555555555555555555555554444444444444
No 95
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=97.69 E-value=0.089 Score=54.56 Aligned_cols=153 Identities=14% Similarity=0.196 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 310 KELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRRVDRENAEADLKAAVQKSQLE 389 (895)
Q Consensus 310 keL~el~~~k~kLEsEleEL~~qLee~e~~~aeL~kelkkLe~qI~ELkrqLEeEr~~~~EElEe~~~eLk~qLqkl~~E 389 (895)
..+.+|.....+|..+...|...++..+...+.|..++..|..++..++..++..+ ...+++ .+|+.-+..++.
T Consensus 8 ~~v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~aK-~l~eEl----edLk~~~~~lEE- 81 (193)
T PF14662_consen 8 SCVEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQKAK-ALEEEL----EDLKTLAKSLEE- 81 (193)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH----HHHHHHHHHHHH-
Confidence 34455667777788888888888888888888888888888888888875554433 223333 222222221111
Q ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 002662 390 TQEKLKRLSDA---ASRRELEQQEVINKLQIAEKQSSLQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKK 466 (895)
Q Consensus 390 l~eerkk~eee---~~~~~eElee~l~KLeE~EKk~r~elEdLk~kLE~~ra~l~~lEkk~reLEkqLeEEk~~~~~lqk 466 (895)
....+... .......+...+..|++.-.++..+.+.++.+...+......|..++..|+.-+....+....-..
T Consensus 82 ---~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~l~~~~da~l~e~t~ 158 (193)
T PF14662_consen 82 ---ENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCEFESLICQRDAILSERTQ 158 (193)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 11112211 112223444456666777777777778888877777777777777777777766665443333333
Q ss_pred HHHHH
Q 002662 467 RVEEL 471 (895)
Q Consensus 467 ei~el 471 (895)
.+.++
T Consensus 159 ~i~eL 163 (193)
T PF14662_consen 159 QIEEL 163 (193)
T ss_pred hHHHH
Confidence 33333
No 96
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=97.69 E-value=0.25 Score=60.64 Aligned_cols=76 Identities=18% Similarity=0.213 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 002662 435 ETRERLVTSDNKVRLLETQVCKEQNVSASW--KKRVEELENEIKKLREELESEKAAREVAWAKVSGLELDILAATRDL 510 (895)
Q Consensus 435 ~~ra~l~~lEkk~reLEkqLeEEk~~~~~l--qkei~elE~EireLeeELE~ek~e~eel~d~v~~LE~ELeka~r~L 510 (895)
..+..+..+-+++..++..+.+...++..+ ...+..+..++.+++.++.+...++..+...+..+..+++..++++
T Consensus 388 ~~~~~~~~~~~~~~~~e~el~~l~~~l~~~~~~e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 465 (650)
T TIGR03185 388 ELQDAKSQLLKELRELEEELAEVDKKISTIPSEEQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTL 465 (650)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666777777777777777765555443 3455666666666666666666666666666666666555555444
No 97
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=97.68 E-value=0.26 Score=59.53 Aligned_cols=12 Identities=17% Similarity=0.144 Sum_probs=5.8
Q ss_pred cccceeeccccc
Q 002662 214 KRKAEEYVSDNK 225 (895)
Q Consensus 214 ~eKS~am~G~s~ 225 (895)
+.|.-.|+|.+.
T Consensus 48 kvk~l~l~Gqt~ 59 (560)
T PF06160_consen 48 KVKKLNLTGQTE 59 (560)
T ss_pred HHHhccccHHHH
Confidence 344445555543
No 98
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=97.67 E-value=0.15 Score=56.49 Aligned_cols=22 Identities=23% Similarity=0.220 Sum_probs=14.8
Q ss_pred HHHHHHHHHhhhh-hhhhhhccc
Q 002662 547 RQQEQLKAMQKTL-EDEENYENT 568 (895)
Q Consensus 547 ~~~~qLr~LQ~~L-Edeek~~s~ 568 (895)
.+-+.|......| =+++++|+.
T Consensus 286 al~R~lsesEsslE~ddEr~fne 308 (310)
T PF09755_consen 286 ALCRHLSESESSLEMDDERQFNE 308 (310)
T ss_pred HHHHHHHHHHHHHhcchHhhhcc
Confidence 5666777777777 234788874
No 99
>KOG1880 consensus Nuclear inhibitor of phosphatase-1 [General function prediction only]
Probab=97.62 E-value=5.6e-05 Score=81.69 Aligned_cols=79 Identities=28% Similarity=0.393 Sum_probs=67.2
Q ss_pred eEEecCCceEecCCCCCCceecCCCcccccceEEEEeccCCCCCCCCCCCCceEEEEe-CCCCceeecCccccCCCCccc
Q 002662 97 NILLTADEHCIGRLVDDAHFQIDSNAVSANHCKIYRKKFASGDLDHSPSGCSSVCLKD-TSTNGTYVNCERFKKNSSEVN 175 (895)
Q Consensus 97 ~i~L~~~~~~IGR~~~~~di~i~~~~IS~~Hc~I~~~~~~~~~~~~~~~~~~~~~L~D-~StNGTfVNg~rI~kng~~~~ 175 (895)
.|.+.+..|.|||+..-|||+|++..+|+.|+.+..... ..++||+| .|+.||||-..||.+ .+.+.
T Consensus 32 l~iddkr~y~Fgrn~q~~df~idh~scSrvhaa~vyhkh-----------l~~~~lidl~s~hgtf~g~~rL~~-~~p~~ 99 (337)
T KOG1880|consen 32 LIIDDKRRYLFGRNHQTCDFVIDHASCSRVHAALVYHKH-----------LSRIFLIDLGSTHGTFLGNERLEP-HKPVQ 99 (337)
T ss_pred HHhhhhhhhhhccCCCccceEeecchhhhhHhhhhhhhc-----------cceEEEEEccCCcceeeeeeeecc-CCCcc
Confidence 344566789999999888999999999999999987653 12699999 588899999999999 78888
Q ss_pred cCCCCEEEEccC
Q 002662 176 IDHGDIISFAAP 187 (895)
Q Consensus 176 L~~GDvIsLg~~ 187 (895)
|..|-...|+..
T Consensus 100 l~i~~~~~fgas 111 (337)
T KOG1880|consen 100 LEIGSTFHFGAS 111 (337)
T ss_pred ccCCceEEEecc
Confidence 999999999864
No 100
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=97.57 E-value=0.27 Score=56.73 Aligned_cols=29 Identities=17% Similarity=0.241 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 320 AEQKHEMEDLNDRLSASMQSCTEANEIMK 348 (895)
Q Consensus 320 ~kLEsEleEL~~qLee~e~~~aeL~kelk 348 (895)
.+|+.++...+++++.+..+.+.|.+++.
T Consensus 333 ~kl~~eie~kEeei~~L~~~~d~L~~q~~ 361 (622)
T COG5185 333 EKLKSEIELKEEEIKALQSNIDELHKQLR 361 (622)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 33344444444444444444444443333
No 101
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=97.57 E-value=0.27 Score=60.47 Aligned_cols=15 Identities=20% Similarity=0.399 Sum_probs=9.7
Q ss_pred hhhhhhhhhhhcccc
Q 002662 733 TIRTADLLASEVAGS 747 (895)
Q Consensus 733 ~~~~~~~~~~~~~~~ 747 (895)
+|.++-.|--|++.|
T Consensus 803 Lv~as~~lQ~EIVas 817 (980)
T KOG0980|consen 803 LVKASRELQTEIVAS 817 (980)
T ss_pred HHHHHHHHHHHHHHh
Confidence 566666666666655
No 102
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.57 E-value=0.16 Score=55.46 Aligned_cols=53 Identities=15% Similarity=0.131 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 002662 427 ESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLR 479 (895)
Q Consensus 427 EdLk~kLE~~ra~l~~lEkk~reLEkqLeEEk~~~~~lqkei~elE~EireLe 479 (895)
..+..+++.+.+....++..+..|+.+..+....+..+......+..+...|.
T Consensus 165 ~~l~~~~e~l~al~~e~e~~~~~L~~qk~e~~~l~~~~aa~~a~~~~e~a~l~ 217 (265)
T COG3883 165 AALEDKLETLVALQNELETQLNSLNSQKAEKNALIAALAAKEASALGEKAALE 217 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 34555556666677777788888888887777777777666666666655555
No 103
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=97.56 E-value=0.38 Score=58.18 Aligned_cols=45 Identities=18% Similarity=0.311 Sum_probs=24.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 460 VSASWKKRVEELENEIKKLREELESEKAAREVAWAKVSGLELDIL 504 (895)
Q Consensus 460 ~~~~lqkei~elE~EireLeeELE~ek~e~eel~d~v~~LE~ELe 504 (895)
....+.+++..+...+..+...+..-...|..+...+..+...|.
T Consensus 345 ~~~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~ 389 (560)
T PF06160_consen 345 IVRELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLE 389 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHH
Confidence 334445555555555555555555555555555555555555444
No 104
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=97.50 E-value=0.51 Score=58.18 Aligned_cols=49 Identities=24% Similarity=0.335 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 280 EKEMKEMKESVSISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDL 329 (895)
Q Consensus 280 e~El~El~e~lrkklE~QL~ELq~kLee~ekeL~el~~~k~kLEsEleEL 329 (895)
+..+.+++..+ -+++.++.+++..+++.++...+......+|..++..+
T Consensus 350 ~~~~~ear~~~-~q~~~ql~~le~~~~e~q~~~qe~~~e~eqLr~elaql 398 (980)
T KOG0980|consen 350 ENLKEEARRRI-EQYENQLLALEGELQEQQREAQENREEQEQLRNELAQL 398 (980)
T ss_pred hhHHHHHHHHH-HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444 67888888888888888877776555555554444333
No 105
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=0.52 Score=57.59 Aligned_cols=39 Identities=31% Similarity=0.442 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 465 KKRVEELENEIKKLREELESEKAAREVAWAKVSGLELDI 503 (895)
Q Consensus 465 qkei~elE~EireLeeELE~ek~e~eel~d~v~~LE~EL 503 (895)
++.+.++...+..|+.++++..+.+..+...+..+..++
T Consensus 558 kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~el 596 (698)
T KOG0978|consen 558 KKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELEL 596 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444444443333
No 106
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.47 E-value=0.59 Score=58.49 Aligned_cols=54 Identities=20% Similarity=0.236 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHH-HHhhhhh-hhhhhcccccccccCC-----CCC-CCcccccCcccc
Q 002662 538 TEEISVLFARQQEQLK-AMQKTLE-DEENYENTSVDIDLCV-----PDG-ENSRTIVGEKLP 591 (895)
Q Consensus 538 ~EEiee~rk~~~~qLr-~LQ~~LE-deek~~s~~lelDl~p-----~ek-rl~~mSgGEKs~ 591 (895)
++.|+.+|...|..+- .+.-.|+ +..+|-.=++.|-|+= +.+ .--.=||||.|.
T Consensus 908 V~~In~~Fs~~F~~mg~aGeV~L~~~~~DydkwgI~ImVkFR~s~~L~~L~sh~QSGGERSV 969 (1072)
T KOG0979|consen 908 VEQINERFSQLFSSMGCAGEVSLEVNPLDYDKWGIMIMVKFRDSEGLKVLDSHRQSGGERSV 969 (1072)
T ss_pred HHHHHHHHHHHHhhcccCceEEeccCcccHhHhceEEEEEEccCcccccccccccCCcchHH
Confidence 4577778888776662 2445554 4444444343333321 222 333468999764
No 107
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.42 E-value=0.46 Score=55.77 Aligned_cols=87 Identities=21% Similarity=0.147 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 421 QSSLQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAREVAWAKVSGLE 500 (895)
Q Consensus 421 k~r~elEdLk~kLE~~ra~l~~lEkk~reLEkqLeEEk~~~~~lqkei~elE~EireLeeELE~ek~e~eel~d~v~~LE 500 (895)
+++.++.+.+-+=.++-.....|+.+--.|++++.-.+. .+-+-..+..+|+.|+++++-+....+++.....-.+
T Consensus 153 rlr~elKe~KfRE~RllseYSELEEENIsLQKqVs~LR~----sQVEyEglkheikRleEe~elln~q~ee~~~Lk~IAe 228 (772)
T KOG0999|consen 153 RLRDELKEYKFREARLLSEYSELEEENISLQKQVSNLRQ----SQVEYEGLKHEIKRLEEETELLNSQLEEAIRLKEIAE 228 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhh----hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444333333333334444444444444444443322 2344455666677777777777776666666666566
Q ss_pred HHHHHHHhhHH
Q 002662 501 LDILAATRDLD 511 (895)
Q Consensus 501 ~ELeka~r~LE 511 (895)
++|+.+-.-+.
T Consensus 229 kQlEEALeTlq 239 (772)
T KOG0999|consen 229 KQLEEALETLQ 239 (772)
T ss_pred HHHHHHHHHHH
Confidence 66654443333
No 108
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.42 E-value=0.56 Score=56.69 Aligned_cols=10 Identities=20% Similarity=0.129 Sum_probs=5.7
Q ss_pred CCCCCCCCCC
Q 002662 641 GGFGSDIDGV 650 (895)
Q Consensus 641 ~~~~~~~~~~ 650 (895)
=||.-||.+.
T Consensus 638 ~Gykid~~~~ 647 (716)
T KOG4593|consen 638 LGYKIDFTLE 647 (716)
T ss_pred hhhhhhcccc
Confidence 3556666655
No 109
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=97.40 E-value=0.33 Score=53.67 Aligned_cols=43 Identities=19% Similarity=0.291 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 316 SRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELK 358 (895)
Q Consensus 316 ~~~k~kLEsEleEL~~qLee~e~~~aeL~kelkkLe~qI~ELk 358 (895)
......+..+..+++.++.++.....+++..+..|-..+.++.
T Consensus 54 ~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~~~l~ 96 (294)
T COG1340 54 REKAQELREERDEINEEVQELKEKRDEINAKLQELRKEYRELK 96 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444444444444444444444444444444433
No 110
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=97.40 E-value=0.55 Score=57.04 Aligned_cols=14 Identities=0% Similarity=0.401 Sum_probs=7.7
Q ss_pred HHHHHHHHhhhhhh
Q 002662 548 QQEQLKAMQKTLED 561 (895)
Q Consensus 548 ~~~qLr~LQ~~LEd 561 (895)
+.+++++|+..|+.
T Consensus 576 ~~rEirdLe~qI~~ 589 (594)
T PF05667_consen 576 ISREIRDLEEQIDT 589 (594)
T ss_pred HHHHHHHHHHHHHH
Confidence 44455666655544
No 111
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=97.39 E-value=0.07 Score=57.46 Aligned_cols=66 Identities=20% Similarity=0.263 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 002662 298 LKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDE 363 (895)
Q Consensus 298 L~ELq~kLee~ekeL~el~~~k~kLEsEleEL~~qLee~e~~~aeL~kelkkLe~qI~ELkrqLEe 363 (895)
++.+-..++.+.+.+......+.+++.+++.++..+...+..+.++..++..++..|.++..++..
T Consensus 12 iq~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~ 77 (239)
T COG1579 12 IQKLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKR 77 (239)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666666677777788888888888888888888888877777777777777655444
No 112
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=97.38 E-value=0.46 Score=54.86 Aligned_cols=64 Identities=20% Similarity=0.251 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 002662 300 VLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDE 363 (895)
Q Consensus 300 ELq~kLee~ekeL~el~~~k~kLEsEleEL~~qLee~e~~~aeL~kelkkLe~qI~ELkrqLEe 363 (895)
.|..+...+.....-+......|+....+.-..|+.+...+...+.+++.|+.++.+|..++..
T Consensus 299 ~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~k 362 (622)
T COG5185 299 TLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQLRK 362 (622)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 3333333344444445556666666666666667777777777777777777777777777755
No 113
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=97.33 E-value=0.35 Score=52.34 Aligned_cols=142 Identities=22% Similarity=0.337 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 347 MKSQKVTIDELKTQLDEERNLRRVDRENAEADLKAAVQKSQLETQEKLKRLSDAASRRELEQQEVINKLQIAEKQSSLQV 426 (895)
Q Consensus 347 lkkLe~qI~ELkrqLEeEr~~~~EElEe~~~eLk~qLqkl~~El~eerkk~eee~~~~~eElee~l~KLeE~EKk~r~el 426 (895)
+..+...+..|...|+.+...++...+.+...++..+.++...+..+.++-.+.........+..+..+++...
T Consensus 7 L~~i~e~~~~f~~~le~e~~~Rr~~ee~r~~~i~e~i~~Le~~l~~E~k~R~E~~~~lq~~~e~~i~~~~~~v~------ 80 (247)
T PF06705_consen 7 LASINERFSGFESDLENEKRQRREQEEQRFQDIKEQIQKLEKALEAEVKRRVESNKKLQSKFEEQINNMQERVE------ 80 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 45666777788888888888888888888888888888888877776665543332222233333333332221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 427 ESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSAS-WKKRVEELENEIKKLREELESEKAAREVAWA 494 (895)
Q Consensus 427 EdLk~kLE~~ra~l~~lEkk~reLEkqLeEEk~~~~~-lqkei~elE~EireLeeELE~ek~e~eel~d 494 (895)
..+....+.+...+..+..++..|...+.+++..+.. +......+..++..|..-++.++..+.+-..
T Consensus 81 ~~~~~~~~~~~~~l~~L~~ri~~L~~~i~ee~~~r~~~ie~~~~~l~~~l~~l~~~~~~Er~~R~erE~ 149 (247)
T PF06705_consen 81 NQISEKQEQLQSRLDSLNDRIEALEEEIQEEKEERPQDIEELNQELVRELNELQEAFENERNEREEREE 149 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1233344445566666667777777777666554433 3445556666777777777777765544333
No 114
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=97.29 E-value=0.17 Score=54.57 Aligned_cols=114 Identities=19% Similarity=0.331 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 411 VINKLQIAEKQSSLQVESLKLKLDETRERLVTS--DNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAA 488 (895)
Q Consensus 411 ~l~KLeE~EKk~r~elEdLk~kLE~~ra~l~~l--Ekk~reLEkqLeEEk~~~~~lqkei~elE~EireLeeELE~ek~e 488 (895)
++..++.....+..++..+..++...+..+... +++.+.|...+.-+ +.++..++.++..+..+++.+...
T Consensus 53 e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~a-------k~r~~~le~el~~l~~~~~~l~~~ 125 (239)
T COG1579 53 ELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIA-------KERINSLEDELAELMEEIEKLEKE 125 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444333221 23444444444333 444444455555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 002662 489 REVAWAKVSGLELDILAATRDLDFERRRLKAARERIMLRETQL 531 (895)
Q Consensus 489 ~eel~d~v~~LE~ELeka~r~LE~Ek~rLq~~rErL~~~eqql 531 (895)
+..+...+..++..+..+...++.+...+......+......+
T Consensus 126 i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e~~~~~~~~~~~L 168 (239)
T COG1579 126 IEDLKERLERLEKNLAEAEARLEEEVAEIREEGQELSSKREEL 168 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555555555555444444444333333
No 115
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.26 E-value=0.84 Score=55.96 Aligned_cols=79 Identities=14% Similarity=0.206 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 425 QVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAREVAWAKVSGLELDI 503 (895)
Q Consensus 425 elEdLk~kLE~~ra~l~~lEkk~reLEkqLeEEk~~~~~lqkei~elE~EireLeeELE~ek~e~eel~d~v~~LE~EL 503 (895)
++..+..++...++++..+-.+..++-..+.........+..+..-.+.++..|.+++....+...++.+++..|+...
T Consensus 807 ~l~~~q~e~~~~keq~~t~~~~tsa~a~~le~m~~~~~~la~e~~~ieq~ls~l~~~~k~~~nli~~ltEk~~sl~~qa 885 (970)
T KOG0946|consen 807 RLQELQSELTQLKEQIQTLLERTSAAADSLESMGSTEKNLANELKLIEQKLSNLQEKIKFGNNLIKELTEKISSLEAQA 885 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhccccchhhHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhhHHHhh
Confidence 3445555555556666665555555555555544444444555555666666666666666666666666666666443
No 116
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=97.24 E-value=0.6 Score=53.24 Aligned_cols=54 Identities=24% Similarity=0.206 Sum_probs=29.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhh-hhhhhhcccccc
Q 002662 508 RDLDFERRRLKAARERIMLRETQLRAFYSTTEEISVLFARQQEQLKAMQKTL-EDEENYENTSVD 571 (895)
Q Consensus 508 r~LE~Ek~rLq~~rErL~~~eqqlkaeiEk~EEiee~rk~~~~qLr~LQ~~L-Edeek~~s~~le 571 (895)
.+|-.|+..+.++.+||+.++ ..++++-| .+-+.|.+-+..| =|+++|+++-+-
T Consensus 281 ~qy~~Ee~~~reen~rlQrkL---~~e~erRe-------alcr~lsEsesslemdeery~Ne~~~ 335 (552)
T KOG2129|consen 281 MQYRAEEVDHREENERLQRKL---INELERRE-------ALCRMLSESESSLEMDEERYLNEFVD 335 (552)
T ss_pred HHHHHHHhhHHHHHHHHHHHH---HHHHHHHH-------HHHHHhhhhhHHHHHHHHHHHhhhhc
Confidence 344444444544444554332 33444444 5556676666666 456888887764
No 117
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=97.20 E-value=0.54 Score=51.87 Aligned_cols=89 Identities=19% Similarity=0.185 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 406 LEQQEVINKLQIAEKQSSLQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESE 485 (895)
Q Consensus 406 eElee~l~KLeE~EKk~r~elEdLk~kLE~~ra~l~~lEkk~reLEkqLeEEk~~~~~lqkei~elE~EireLeeELE~e 485 (895)
..|+..+....+..++...-++.++++|..++-++..+ +.+..-++.++.++-.+-..++.++.+|+.+---+
T Consensus 161 nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~-------e~m~qne~~kv~k~~~Kqes~eERL~QlqsEN~LL 233 (305)
T PF14915_consen 161 NSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKEI-------EHMYQNEQDKVNKYIGKQESLEERLSQLQSENMLL 233 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445666666677788888888777555444 44444455555555555566666666666666666
Q ss_pred HHHHHHHHHHHHHHHH
Q 002662 486 KAAREVAWAKVSGLEL 501 (895)
Q Consensus 486 k~e~eel~d~v~~LE~ 501 (895)
+...+++-.+...-++
T Consensus 234 rQQLddA~~K~~~kek 249 (305)
T PF14915_consen 234 RQQLDDAHNKADNKEK 249 (305)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6655555555544444
No 118
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=97.18 E-value=1.4 Score=56.32 Aligned_cols=17 Identities=29% Similarity=0.167 Sum_probs=8.5
Q ss_pred Hhhhhcc--ChhhHhhcCC
Q 002662 807 CEMIGIV--TPELKVQFGG 823 (895)
Q Consensus 807 ~~~~~~~--~~~~~~~~~~ 823 (895)
..||||| +|+|+..++-
T Consensus 873 ~~qiiIISH~eel~e~~~~ 891 (908)
T COG0419 873 GRQIIIISHVEELKERADV 891 (908)
T ss_pred CCeEEEEeChHHHHHhCCe
Confidence 3455555 3555544433
No 119
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=97.16 E-value=1 Score=54.38 Aligned_cols=49 Identities=16% Similarity=0.268 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 002662 315 ISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDE 363 (895)
Q Consensus 315 l~~~k~kLEsEleEL~~qLee~e~~~aeL~kelkkLe~qI~ELkrqLEe 363 (895)
....+..++..+..|...|.....+...+...++.+-.++..--..|++
T Consensus 347 ~s~~v~e~qtti~~L~~lL~~Eqqr~~~~ed~lk~l~~eLqkks~eleE 395 (786)
T PF05483_consen 347 HSFVVTELQTTICNLKELLTTEQQRLKKNEDQLKILTMELQKKSSELEE 395 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHHHHH
Confidence 3334444444444444444444444444444444444444433333433
No 120
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=97.16 E-value=0.69 Score=52.37 Aligned_cols=43 Identities=19% Similarity=0.309 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 292 ISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLS 334 (895)
Q Consensus 292 kklE~QL~ELq~kLee~ekeL~el~~~k~kLEsEleEL~~qLe 334 (895)
+..+.++.+++..+......+..+.++...++..+..|..+..
T Consensus 119 ~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ 161 (499)
T COG4372 119 EAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRR 161 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555444444444444444443333
No 121
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=97.15 E-value=0.44 Score=50.01 Aligned_cols=69 Identities=22% Similarity=0.280 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 426 VESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAREVAWAKVS 497 (895)
Q Consensus 426 lEdLk~kLE~~ra~l~~lEkk~reLEkqLeEEk~~~~~lqkei~elE~EireLeeELE~ek~e~eel~d~v~ 497 (895)
-+.|..+|+.+...+...++++..|+++++-....+ ...+.....+..++..++..+..++..+..++.
T Consensus 120 ReeL~~kL~~~~~~l~~~~~ki~~Lek~leL~~k~~---~rql~~e~kK~~~~~~~~~~l~~ei~~L~~klk 188 (194)
T PF15619_consen 120 REELQRKLSQLEQKLQEKEKKIQELEKQLELENKSF---RRQLASEKKKHKEAQEEVKSLQEEIQRLNQKLK 188 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666666666666666666666666655443322 333343344444444444444444443333443
No 122
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=97.11 E-value=0.72 Score=51.79 Aligned_cols=73 Identities=29% Similarity=0.337 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 425 QVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAREVAWAKVS 497 (895)
Q Consensus 425 elEdLk~kLE~~ra~l~~lEkk~reLEkqLeEEk~~~~~lqkei~elE~EireLeeELE~ek~e~eel~d~v~ 497 (895)
.+..+...-..++.++.-+-.+..+|+..|..=...+..+.+++..+...++.|+.+-...+...+.....+-
T Consensus 203 ~~~~~~~~E~~Lr~QL~~Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~ 275 (309)
T PF09728_consen 203 QVQTLKETEKELREQLNLYSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTWKSKWEKSNKALI 275 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 4445555555567777777777777777777777777777777777777777777777777766665555553
No 123
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.09 E-value=1.3 Score=54.28 Aligned_cols=23 Identities=17% Similarity=0.049 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 002662 436 TRERLVTSDNKVRLLETQVCKEQ 458 (895)
Q Consensus 436 ~ra~l~~lEkk~reLEkqLeEEk 458 (895)
+.+....+..++..|+.++.-..
T Consensus 515 l~~~~~~~~~~i~~leeq~~~lt 537 (698)
T KOG0978|consen 515 LKASVDKLELKIGKLEEQERGLT 537 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444444444445544444443
No 124
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=97.05 E-value=0.82 Score=51.35 Aligned_cols=57 Identities=16% Similarity=0.105 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 302 RDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELK 358 (895)
Q Consensus 302 q~kLee~ekeL~el~~~k~kLEsEleEL~~qLee~e~~~aeL~kelkkLe~qI~ELk 358 (895)
+.++...++....+...+..+..++.-.......++..+.+|++..+.+..+...+.
T Consensus 42 ~k~~~~~~Kk~~~l~kek~~l~~E~~k~~~~k~KLE~LCRELQk~Nk~lkeE~~~~~ 98 (309)
T PF09728_consen 42 QKQLKKLQKKQEQLQKEKDQLQSELSKAILAKSKLESLCRELQKQNKKLKEESKRRA 98 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444555555566666655555555666666666666655554444333
No 125
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.04 E-value=0.69 Score=56.64 Aligned_cols=37 Identities=16% Similarity=0.223 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 298 LKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLS 334 (895)
Q Consensus 298 L~ELq~kLee~ekeL~el~~~k~kLEsEleEL~~qLe 334 (895)
..+|+...++.+.++........+|+.++..|..+|.
T Consensus 680 ~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg 716 (970)
T KOG0946|consen 680 EKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLG 716 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3333333344444444444444444444444444444
No 126
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=97.04 E-value=0.54 Score=48.95 Aligned_cols=115 Identities=17% Similarity=0.211 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 243 DFRSLQRSNTELRKQLESQVLEIDKLRNENRVVVE----------RHEKEMKEMKESVSISYLHQLKVLRDMLDAKQKEL 312 (895)
Q Consensus 243 ~Vr~Le~e~~eLr~qLee~~~~i~~lr~Ei~~i~e----------r~e~El~El~e~lrkklE~QL~ELq~kLee~ekeL 312 (895)
.|..|...+.-|..+++.....+..+...+....- -.+.......+++ ..++.|+++.++-.++..+..
T Consensus 5 ~va~lnrri~~leeele~aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~-e~~e~qLkEAk~iaE~adrK~ 83 (205)
T KOG1003|consen 5 DVAALNRRIQLLEEELDRAQERLATALQKLEEAEQAADESERGMKVIENRAQKLEEKM-EAQEAQLKEAKHIAEKADRKY 83 (205)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666665555554411110 0011122222222 567788888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 313 AEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELK 358 (895)
Q Consensus 313 ~el~~~k~kLEsEleEL~~qLee~e~~~aeL~kelkkLe~qI~ELk 358 (895)
.+...++.-.+.+++....+.+..+..+.+|...++.+...+..|.
T Consensus 84 eEVarkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk~l~ 129 (205)
T KOG1003|consen 84 EEVARKLVIIEGELERAEERAEAAESQSEELEEDLRILDSNLKSLS 129 (205)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHH
Confidence 8888888888888888888888888888888888877766665554
No 127
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.03 E-value=1.1 Score=52.67 Aligned_cols=74 Identities=18% Similarity=0.213 Sum_probs=42.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 240 SLDDFRSLQRSNTELRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKESVSISYLHQLKVLRDMLDAKQKELAEISRIS 319 (895)
Q Consensus 240 ~ld~Vr~Le~e~~eLr~qLee~~~~i~~lr~Ei~~i~er~e~El~El~e~lrkklE~QL~ELq~kLee~ekeL~el~~~k 319 (895)
....|..|..++..|..+++.....+- .-++.=|.=++++ ..+..++.+|++.++..+.++......+
T Consensus 6 aeq~ve~lr~eierLT~el~q~t~e~~----------qaAeyGL~lLeeK--~~Lkqq~eEleaeyd~~R~Eldqtkeal 73 (772)
T KOG0999|consen 6 AEQEVEKLRQEIERLTEELEQTTEEKI----------QAAEYGLELLEEK--EDLKQQLEELEAEYDLARTELDQTKEAL 73 (772)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777777777766555432210 0111112222222 3567778888888888888888766666
Q ss_pred HHHHHH
Q 002662 320 AEQKHE 325 (895)
Q Consensus 320 ~kLEsE 325 (895)
.+..+.
T Consensus 74 ~q~~s~ 79 (772)
T KOG0999|consen 74 GQYRSQ 79 (772)
T ss_pred HHHHHH
Confidence 665553
No 128
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=97.01 E-value=1.6 Score=58.29 Aligned_cols=22 Identities=18% Similarity=0.123 Sum_probs=14.9
Q ss_pred hHHHhhhhccChhhHhhcCCCC
Q 002662 804 QALCEMIGIVTPELKVQFGGAV 825 (895)
Q Consensus 804 ~~~~~~~~~~~~~~~~~~~~~~ 825 (895)
=+|-|+..=|||..+..|.+.+
T Consensus 1281 ilLDEp~a~lD~~~~~~~~~ll 1302 (1353)
T TIGR02680 1281 ILLDEAFAGVDDNARAHLFGLL 1302 (1353)
T ss_pred EEEeCccccCCHHHHHHHHHHH
Confidence 3566777778888777666543
No 129
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=97.00 E-value=0.81 Score=50.50 Aligned_cols=40 Identities=18% Similarity=0.095 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 314 EISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVT 353 (895)
Q Consensus 314 el~~~k~kLEsEleEL~~qLee~e~~~aeL~kelkkLe~q 353 (895)
+...++.-|..+..-|+..|+........|+.++.+....
T Consensus 60 qy~~QLn~L~aENt~L~SkLe~EKq~kerLEtEiES~rsR 99 (305)
T PF14915_consen 60 QYNGQLNVLKAENTMLNSKLEKEKQNKERLETEIESYRSR 99 (305)
T ss_pred HHhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHH
Confidence 4555555555555555566655555555555555544433
No 130
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=97.00 E-value=0.17 Score=50.62 Aligned_cols=32 Identities=22% Similarity=0.179 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 426 VESLKLKLDETRERLVTSDNKVRLLETQVCKE 457 (895)
Q Consensus 426 lEdLk~kLE~~ra~l~~lEkk~reLEkqLeEE 457 (895)
+..+..+|..+...+..++++++.|+.....|
T Consensus 96 L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~ 127 (143)
T PF12718_consen 96 LKETTEKLREADVKAEHFERKVKALEQERDQW 127 (143)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHH
Confidence 33444444444455555555555555555555
No 131
>PRK09039 hypothetical protein; Validated
Probab=96.87 E-value=0.18 Score=57.28 Aligned_cols=41 Identities=20% Similarity=0.215 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 002662 321 EQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQL 361 (895)
Q Consensus 321 kLEsEleEL~~qLee~e~~~aeL~kelkkLe~qI~ELkrqL 361 (895)
.++..+..+..+|........+....+..|+++|..|+.+|
T Consensus 113 ~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Ql 153 (343)
T PRK09039 113 AAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQL 153 (343)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555555555555555555555543
No 132
>PF13514 AAA_27: AAA domain
Probab=96.87 E-value=2.9 Score=54.74 Aligned_cols=37 Identities=35% Similarity=0.419 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 469 EELENEIKKLREELESEKAAREVAWAKVSGLELDILA 505 (895)
Q Consensus 469 ~elE~EireLeeELE~ek~e~eel~d~v~~LE~ELek 505 (895)
..+..++..++.+++.+..++.++...+..+..+|..
T Consensus 892 ~~l~~~l~~l~~~l~~l~~~~~~l~~~~~~~~~~l~~ 928 (1111)
T PF13514_consen 892 DELEAELEELEEELEELEEELEELQEERAELEQELEA 928 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555555555555543
No 133
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=96.80 E-value=1.4 Score=50.28 Aligned_cols=20 Identities=30% Similarity=0.398 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 002662 242 DDFRSLQRSNTELRKQLESQ 261 (895)
Q Consensus 242 d~Vr~Le~e~~eLr~qLee~ 261 (895)
.+|..|.++|..|..+++.+
T Consensus 50 ~rv~slsq~Nkvlk~elet~ 69 (552)
T KOG2129|consen 50 ARVSSLSQRNKVLKGELETL 69 (552)
T ss_pred HHHHHHHhhhhhhhhhHHhh
Confidence 45556666666666555544
No 134
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=96.73 E-value=1.1 Score=47.68 Aligned_cols=43 Identities=16% Similarity=0.159 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 461 SASWKKRVEELENEIKKLREELESEKAAREVAWAKVSGLELDI 503 (895)
Q Consensus 461 ~~~lqkei~elE~EireLeeELE~ek~e~eel~d~v~~LE~EL 503 (895)
...++..++..+.++..|+..|+.-.++.++|..++..|-..|
T Consensus 163 ~~aLqa~lkk~e~~~~SLe~~LeQK~kEn~ELtkICDeLI~k~ 205 (207)
T PF05010_consen 163 LLALQASLKKEEMKVQSLEESLEQKTKENEELTKICDELISKM 205 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445777777777888888888888888888888887776654
No 135
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=96.71 E-value=0.0004 Score=85.66 Aligned_cols=10 Identities=30% Similarity=0.308 Sum_probs=4.6
Q ss_pred CceEecCCCC
Q 002662 103 DEHCIGRLVD 112 (895)
Q Consensus 103 ~~~~IGR~~~ 112 (895)
+...||++++
T Consensus 98 d~~~Iae~~d 107 (713)
T PF05622_consen 98 DLQAIAENSD 107 (713)
T ss_dssp -HHHHHTT--
T ss_pred CHHHHHhCCC
Confidence 3457777654
No 136
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=96.71 E-value=0.0004 Score=85.65 Aligned_cols=7 Identities=0% Similarity=-0.401 Sum_probs=0.0
Q ss_pred CCccccc
Q 002662 580 ENSRTIV 586 (895)
Q Consensus 580 rl~~mSg 586 (895)
|+.+.||
T Consensus 678 r~~~~~~ 684 (713)
T PF05622_consen 678 RLAALSG 684 (713)
T ss_dssp -------
T ss_pred hcccCCC
Confidence 7777665
No 137
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.70 E-value=1.3 Score=48.46 Aligned_cols=10 Identities=20% Similarity=0.165 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 002662 346 IMKSQKVTID 355 (895)
Q Consensus 346 elkkLe~qI~ 355 (895)
.+++++.+|.
T Consensus 81 eik~l~~eI~ 90 (265)
T COG3883 81 EIKKLQKEIA 90 (265)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 138
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=96.69 E-value=0.00041 Score=85.65 Aligned_cols=20 Identities=20% Similarity=0.106 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 002662 438 ERLVTSDNKVRLLETQVCKE 457 (895)
Q Consensus 438 a~l~~lEkk~reLEkqLeEE 457 (895)
+.+..++-++..|+..+..|
T Consensus 305 ~el~~lq~e~~~Le~el~sW 324 (722)
T PF05557_consen 305 EELAELQLENEKLEDELNSW 324 (722)
T ss_dssp --------------------
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444444444
No 139
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=96.68 E-value=2.8 Score=51.95 Aligned_cols=48 Identities=17% Similarity=0.152 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 306 DAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVT 353 (895)
Q Consensus 306 ee~ekeL~el~~~k~kLEsEleEL~~qLee~e~~~aeL~kelkkLe~q 353 (895)
.++......+...+..|..+|.++..+=..+-..+++|+.+.-.|+++
T Consensus 65 ~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQKq 112 (717)
T PF09730_consen 65 QELRKECEDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQKQ 112 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 333333444444444555555555444333333333333333333333
No 140
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=96.60 E-value=0.71 Score=52.89 Aligned_cols=25 Identities=8% Similarity=0.081 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 411 VINKLQIAEKQSSLQVESLKLKLDE 435 (895)
Q Consensus 411 ~l~KLeE~EKk~r~elEdLk~kLE~ 435 (895)
.+..++.....++..+..++..++.
T Consensus 247 ~l~~~~~~l~~~~~~l~~~~~~l~~ 271 (423)
T TIGR01843 247 ELTEAQARLAELRERLNKARDRLQR 271 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444444445555555555555554
No 141
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=96.57 E-value=1.2 Score=46.41 Aligned_cols=22 Identities=45% Similarity=0.649 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 002662 466 KRVEELENEIKKLREELESEKA 487 (895)
Q Consensus 466 kei~elE~EireLeeELE~ek~ 487 (895)
+.+..|+..+-.|+..+..++.
T Consensus 165 RsVakLeke~DdlE~kl~~~k~ 186 (205)
T KOG1003|consen 165 RRVAKLEKERDDLEEKLEEAKE 186 (205)
T ss_pred HHHHHHcccHHHHHHhhHHHHH
Confidence 3333333333334433333333
No 142
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=96.56 E-value=4.4 Score=52.74 Aligned_cols=31 Identities=13% Similarity=0.202 Sum_probs=19.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhhhhhcc
Q 002662 537 TTEEISVLFARQQEQLKAMQKTLEDEENYEN 567 (895)
Q Consensus 537 k~EEiee~rk~~~~qLr~LQ~~LEdeek~~s 567 (895)
.+..+++++++.+-++......-+|-.+|..
T Consensus 1082 ~~kd~~~nyr~~~ie~~tt~~~~~DL~ky~~ 1112 (1294)
T KOG0962|consen 1082 DFKDAEKNYRKALIELKTTELSNKDLDKYYK 1112 (1294)
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666777777777666655566566655
No 143
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=96.48 E-value=1.8 Score=47.30 Aligned_cols=28 Identities=21% Similarity=0.143 Sum_probs=18.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 240 SLDDFRSLQRSNTELRKQLESQVLEIDK 267 (895)
Q Consensus 240 ~ld~Vr~Le~e~~eLr~qLee~~~~i~~ 267 (895)
.+...+.|...+..+..++......+..
T Consensus 15 ~~~~~~~l~~~~e~~~~~L~~~~~~~~~ 42 (264)
T PF06008_consen 15 AWPAPYKLLSSIEDLTNQLRSYRSKLNP 42 (264)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHhccchh
Confidence 4566777777777777666666555433
No 144
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=96.48 E-value=0.015 Score=71.99 Aligned_cols=17 Identities=12% Similarity=0.057 Sum_probs=12.9
Q ss_pred cccccccCCCCC-CCccc
Q 002662 568 TSVDIDLCVPDG-ENSRT 584 (895)
Q Consensus 568 ~~lelDl~p~ek-rl~~m 584 (895)
.||++|+.|-++ ||.+|
T Consensus 644 lGyki~~~~~~~~rl~S~ 661 (722)
T PF05557_consen 644 LGYKIDFMPNGRVRLTSM 661 (722)
T ss_dssp HSEEEEEETTTEEEEEET
T ss_pred hcceeeecCCCeEEEEec
Confidence 577899888877 77665
No 145
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=96.45 E-value=0.75 Score=46.01 Aligned_cols=47 Identities=15% Similarity=0.332 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 294 YLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSC 340 (895)
Q Consensus 294 lE~QL~ELq~kLee~ekeL~el~~~k~kLEsEleEL~~qLee~e~~~ 340 (895)
++.+++.+..+...++.++..|..++..++.++..+..+|..+....
T Consensus 19 ~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~l 65 (143)
T PF12718_consen 19 LEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKL 65 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444444444433333
No 146
>PRK11281 hypothetical protein; Provisional
Probab=96.45 E-value=5.1 Score=52.20 Aligned_cols=7 Identities=43% Similarity=0.653 Sum_probs=2.6
Q ss_pred HHHhhhh
Q 002662 553 KAMQKTL 559 (895)
Q Consensus 553 r~LQ~~L 559 (895)
.+++..|
T Consensus 445 ~~l~~~L 451 (1113)
T PRK11281 445 DSLQSTL 451 (1113)
T ss_pred HHHHHHH
Confidence 3333333
No 147
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=96.44 E-value=2.1 Score=47.76 Aligned_cols=35 Identities=23% Similarity=0.256 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 292 ISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEM 326 (895)
Q Consensus 292 kklE~QL~ELq~kLee~ekeL~el~~~k~kLEsEl 326 (895)
+.+..+-..|..+.+..+..+......+..|..++
T Consensus 86 qsLl~~N~~L~~~~~~le~~L~~~~e~v~qLrHeL 120 (306)
T PF04849_consen 86 QSLLEQNQDLSERNEALEEQLGAALEQVEQLRHEL 120 (306)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444445555555555555555555544
No 148
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=96.33 E-value=3.5 Score=51.58 Aligned_cols=78 Identities=24% Similarity=0.308 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 428 SLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAREVAWAKVSGLELDILA 505 (895)
Q Consensus 428 dLk~kLE~~ra~l~~lEkk~reLEkqLeEEk~~~~~lqkei~elE~EireLeeELE~ek~e~eel~d~v~~LE~ELek 505 (895)
.|+.+|...+.....++..++...............++.++..+..++..|+.+|+..+...+++..+...|+.+|+.
T Consensus 635 eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~~~~e~E~~~l~~Ki~~Le~Ele~er~~~~e~~~kc~~Le~el~r 712 (769)
T PF05911_consen 635 ELQSELESAKESNSLAETQLKAMKESYESLETRLKDLEAEAEELQSKISSLEEELEKERALSEELEAKCRELEEELER 712 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHh
Confidence 333333333333333333333333333333333333344555555555555555555555555555555555555543
No 149
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=96.33 E-value=2.7 Score=47.78 Aligned_cols=51 Identities=22% Similarity=0.260 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 302 RDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKV 352 (895)
Q Consensus 302 q~kLee~ekeL~el~~~k~kLEsEleEL~~qLee~e~~~aeL~kelkkLe~ 352 (895)
+.++..+.+.+......+..+..+..+|..+|..+-.+...|+.++..+..
T Consensus 122 ~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a 172 (499)
T COG4372 122 RQELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQA 172 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444444444444333
No 150
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=96.25 E-value=4.4 Score=49.44 Aligned_cols=21 Identities=33% Similarity=0.316 Sum_probs=13.9
Q ss_pred CCCCCCCcccccchhHHHhhh
Q 002662 790 PSSKAAPTKWSHDRQALCEMI 810 (895)
Q Consensus 790 ~~~~~~~~~~~~~~~~~~~~~ 810 (895)
+++..-.+..-++-+.|++-|
T Consensus 695 ~~~~gsl~~ll~dLQ~ls~~i 715 (739)
T PF07111_consen 695 ESTKGSLSVLLDDLQGLSEAI 715 (739)
T ss_pred cccCCCHHHHHHHHHHHHHHH
Confidence 344444556666788888887
No 151
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=96.24 E-value=6.5 Score=51.27 Aligned_cols=70 Identities=19% Similarity=0.246 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 002662 440 LVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAREVAWAKVSGLELDILAATRDLD 511 (895)
Q Consensus 440 l~~lEkk~reLEkqLeEEk~~~~~lqkei~elE~EireLeeELE~ek~e~eel~d~v~~LE~ELeka~r~LE 511 (895)
+..++.+++.+++.+......+..+. +.....+...|.++.+.+..+...+.-....++..+..++++|.
T Consensus 1010 ~~~l~~q~~e~~re~~~ld~Qi~~~~--~~~~~ee~~~L~~~~~~l~se~~~~lg~~ke~e~~i~~~k~eL~ 1079 (1294)
T KOG0962|consen 1010 LRNLERKLKELERELSELDKQILEAD--IKSVKEERVKLEEEREKLSSEKNLLLGEMKQYESQIKKLKQELR 1079 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHhh
Confidence 34444555555555554444333222 44444555666666666666555555555555555554444443
No 152
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=96.24 E-value=2 Score=46.23 Aligned_cols=131 Identities=12% Similarity=0.132 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 304 MLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRRVDRENAEADLKAAV 383 (895)
Q Consensus 304 kLee~ekeL~el~~~k~kLEsEleEL~~qLee~e~~~aeL~kelkkLe~qI~ELkrqLEeEr~~~~EElEe~~~eLk~qL 383 (895)
....++.++.+.+..-.+++. +|..+|..++.++.+|.....+|.-++.-++..++..+.+-+.. +
T Consensus 28 ~f~~~reEl~EFQegSrE~Ea---elesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q-----------~ 93 (333)
T KOG1853|consen 28 HFLQMREELNEFQEGSREIEA---ELESQLDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQ-----------E 93 (333)
T ss_pred HHHHHHHHHHHHhhhhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------H
Confidence 334444455555555555555 45566666666666666666666655544444443333221111 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 384 QKSQLETQEKLKRLSDAASRRELEQQEVINKLQIAEKQSSLQVESLKLKLDETRERLVTSDNKVRL 449 (895)
Q Consensus 384 qkl~~El~eerkk~eee~~~~~eElee~l~KLeE~EKk~r~elEdLk~kLE~~ra~l~~lEkk~re 449 (895)
+.++..+.+ .+.+.+.....+++|+..-..|+...+..-..++++..+|..+-+.++.|+-++.+
T Consensus 94 s~Leddlsq-t~aikeql~kyiReLEQaNDdLErakRati~sleDfeqrLnqAIErnAfLESELdE 158 (333)
T KOG1853|consen 94 SQLEDDLSQ-THAIKEQLRKYIRELEQANDDLERAKRATIYSLEDFEQRLNQAIERNAFLESELDE 158 (333)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHhccHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 111111111 00111222333444444444444444444455677777777766666655554433
No 153
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=96.23 E-value=4.1 Score=48.87 Aligned_cols=19 Identities=16% Similarity=0.151 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 002662 295 LHQLKVLRDMLDAKQKELA 313 (895)
Q Consensus 295 E~QL~ELq~kLee~ekeL~ 313 (895)
..+++.|+.++.+++..+.
T Consensus 154 ~~~~~sL~ekl~lld~al~ 172 (511)
T PF09787_consen 154 NGAPRSLQEKLSLLDEALK 172 (511)
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 3334555656555555444
No 154
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=96.21 E-value=2 Score=45.14 Aligned_cols=95 Identities=19% Similarity=0.210 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 423 SLQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEE-LENEIKKLREELESEKAAREVAWAKVSGLEL 501 (895)
Q Consensus 423 r~elEdLk~kLE~~ra~l~~lEkk~reLEkqLeEEk~~~~~lqkei~e-lE~EireLeeELE~ek~e~eel~d~v~~LE~ 501 (895)
..++..|+..|...+.....++++++..+..+-..+..+..+++-+.. --.+..+|..+|..+....++....+..|++
T Consensus 67 ~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l~~~~~ki~~Lek 146 (194)
T PF15619_consen 67 NEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKKLSEDKNLAEREELQRKLSQLEQKLQEKEKKIQELEK 146 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555555555555554444444333332221 1112456666666666666677777777777
Q ss_pred HHHH----HHhhHHHHHHHH
Q 002662 502 DILA----ATRDLDFERRRL 517 (895)
Q Consensus 502 ELek----a~r~LE~Ek~rL 517 (895)
.++- ..+++-.+....
T Consensus 147 ~leL~~k~~~rql~~e~kK~ 166 (194)
T PF15619_consen 147 QLELENKSFRRQLASEKKKH 166 (194)
T ss_pred HHHHHhhHHHHHHHHHHHHH
Confidence 6653 445555554443
No 155
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=96.20 E-value=3.4 Score=47.78 Aligned_cols=22 Identities=27% Similarity=0.498 Sum_probs=18.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHH
Q 002662 240 SLDDFRSLQRSNTELRKQLESQ 261 (895)
Q Consensus 240 ~ld~Vr~Le~e~~eLr~qLee~ 261 (895)
.+.++++|..++.+|+.+++..
T Consensus 92 ~~~kl~RL~~Ev~EL~eEl~~~ 113 (388)
T PF04912_consen 92 PEQKLQRLRREVEELKEELEKR 113 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4688899999999998888775
No 156
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=96.14 E-value=2.1 Score=52.32 Aligned_cols=34 Identities=21% Similarity=0.294 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 465 KKRVEELENEIKKLREELESEKAAREVAWAKVSG 498 (895)
Q Consensus 465 qkei~elE~EireLeeELE~ek~e~eel~d~v~~ 498 (895)
...+..+..+-.+.-..+..+.....++|..+..
T Consensus 232 ~~~v~~l~~~k~qr~~kl~~l~~~~~~LWn~l~t 265 (660)
T KOG4302|consen 232 DKMVKKLKEEKKQRLQKLQDLRTKLLELWNLLDT 265 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 4444444444444444455555555566665554
No 157
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=96.09 E-value=2.7 Score=45.51 Aligned_cols=76 Identities=14% Similarity=0.256 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 318 ISAEQKHEMEDLNDRLSASMQSCTEANEIMK-SQKVTIDELKTQLDEERNLRRVDRENAEADLKAAVQKSQLETQEK 393 (895)
Q Consensus 318 ~k~kLEsEleEL~~qLee~e~~~aeL~kelk-kLe~qI~ELkrqLEeEr~~~~EElEe~~~eLk~qLqkl~~El~ee 393 (895)
++..+...+..|...|........+..+.+. .++.++..+...++.....+...+......|...+..+...+.++
T Consensus 35 r~~~i~e~i~~Le~~l~~E~k~R~E~~~~lq~~~e~~i~~~~~~v~~~~~~~~~~~~~~l~~L~~ri~~L~~~i~ee 111 (247)
T PF06705_consen 35 RFQDIKEQIQKLEKALEAEVKRRVESNKKLQSKFEEQINNMQERVENQISEKQEQLQSRLDSLNDRIEALEEEIQEE 111 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444444444444443 334444444444444444444444444444444444444433333
No 158
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=96.08 E-value=7.7 Score=50.59 Aligned_cols=6 Identities=17% Similarity=0.152 Sum_probs=2.5
Q ss_pred ccCCCC
Q 002662 573 DLCVPD 578 (895)
Q Consensus 573 Dl~p~e 578 (895)
+.+|++
T Consensus 436 s~~Pi~ 441 (1109)
T PRK10929 436 DVSPIS 441 (1109)
T ss_pred CCCCCC
Confidence 344443
No 159
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=96.07 E-value=0.8 Score=57.22 Aligned_cols=13 Identities=15% Similarity=-0.235 Sum_probs=8.8
Q ss_pred cccccCc-cccccc
Q 002662 582 SRTIVGE-KLPNGH 594 (895)
Q Consensus 582 ~~mSgGE-Ks~~~~ 594 (895)
-+-.||+ ||++..
T Consensus 552 ts~~~G~GKTt~a~ 565 (754)
T TIGR01005 552 QRPRPVLGKSDIEA 565 (754)
T ss_pred ecCCCCCChhHHHH
Confidence 3444888 888766
No 160
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=96.00 E-value=8.3 Score=50.32 Aligned_cols=10 Identities=20% Similarity=0.225 Sum_probs=5.0
Q ss_pred CCcccccCcc
Q 002662 580 ENSRTIVGEK 589 (895)
Q Consensus 580 rl~~mSgGEK 589 (895)
.+..|||||+
T Consensus 946 ~~~~LSgGe~ 955 (1047)
T PRK10246 946 DTRTLSGGES 955 (1047)
T ss_pred CcccCCHHHH
Confidence 3445555554
No 161
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=95.94 E-value=3.3 Score=50.25 Aligned_cols=13 Identities=15% Similarity=-0.225 Sum_probs=9.2
Q ss_pred cccccCccccccc
Q 002662 582 SRTIVGEKLPNGH 594 (895)
Q Consensus 582 ~~mSgGEKs~~~~ 594 (895)
..+||||++-+..
T Consensus 439 ~~lSgGe~~rv~l 451 (563)
T TIGR00634 439 KVASGGELSRVML 451 (563)
T ss_pred hhcCHhHHHHHHH
Confidence 5789999885543
No 162
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=95.94 E-value=1.5 Score=51.92 Aligned_cols=30 Identities=20% Similarity=0.283 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002662 243 DFRSLQRSNTELRKQLESQVLEIDKLRNEN 272 (895)
Q Consensus 243 ~Vr~Le~e~~eLr~qLee~~~~i~~lr~Ei 272 (895)
-...|+.++.+++.+++.....+...+.+.
T Consensus 162 ~~~fl~~ql~~~~~~L~~ae~~l~~f~~~~ 191 (498)
T TIGR03007 162 AQRFIDEQIKTYEKKLEAAENRLKAFKQEN 191 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 456777888888888887777777666554
No 163
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=95.92 E-value=0.45 Score=56.36 Aligned_cols=63 Identities=17% Similarity=0.335 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 430 KLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAREVAWAKV 496 (895)
Q Consensus 430 k~kLE~~ra~l~~lEkk~reLEkqLeEEk~~~~~lqkei~elE~EireLeeELE~ek~e~eel~d~v 496 (895)
...+...+..+..+..++..|.+++++.+.... .+-..+.++..|+.+++..+..|+.+..+.
T Consensus 316 ~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~----~~~~~~~el~~L~Re~~~~~~~Y~~l~~r~ 378 (498)
T TIGR03007 316 QIELAEAEAEIASLEARVAELTARIERLESLLR----TIPEVEAELTQLNRDYEVNKSNYEQLLTRR 378 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444444443322221 122334444444444444444444444443
No 164
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=95.91 E-value=1.4 Score=55.17 Aligned_cols=22 Identities=14% Similarity=0.084 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 002662 293 SYLHQLKVLRDMLDAKQKELAE 314 (895)
Q Consensus 293 klE~QL~ELq~kLee~ekeL~e 314 (895)
=+..|+.+++.+++..+.++..
T Consensus 198 ~L~~ql~~l~~~l~~aE~~l~~ 219 (754)
T TIGR01005 198 FLAPEIADLSKQSRDAEAEVAA 219 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666666666666666664
No 165
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=95.78 E-value=5.3 Score=46.26 Aligned_cols=43 Identities=16% Similarity=0.302 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 403 RRELEQQEVINKLQIAEKQSSLQVESLKLKLDETRERLVTSDN 445 (895)
Q Consensus 403 ~~~eElee~l~KLeE~EKk~r~elEdLk~kLE~~ra~l~~lEk 445 (895)
+++.+......+|+...++...++..+...+..++..+...+.
T Consensus 251 ~Ri~et~~ak~~Le~ql~~~~~ei~~~e~~i~~L~~ai~~k~~ 293 (384)
T PF03148_consen 251 KRIHETQEAKNELEWQLKKTLQEIAEMEKNIEDLEKAIRDKEG 293 (384)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333444444444444444444444444444444444444433
No 166
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=95.77 E-value=8.2 Score=48.45 Aligned_cols=110 Identities=22% Similarity=0.237 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHHH--------------HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 247 LQRSNTELRKQLESQ--------------VLEIDKLRNENRVVVERHEKEMKEMKESVSISYLHQLKVLRDMLDAKQKEL 312 (895)
Q Consensus 247 Le~e~~eLr~qLee~--------------~~~i~~lr~Ei~~i~er~e~El~El~e~lrkklE~QL~ELq~kLee~ekeL 312 (895)
-+.+...|+.+|+.. -..++..=++++.+++..+..+.++.-+..+.++.--.+|+.+|.+..+++
T Consensus 22 ae~e~~~lk~~l~~~~~~~~~~e~r~~hld~aLkec~~qlr~~ree~eq~i~~~~~~~s~e~e~~~~~le~~l~e~~~~l 101 (769)
T PF05911_consen 22 AEAEAASLKQQLEAATQQKLALEDRVSHLDGALKECMRQLRQVREEQEQKIHEAVAKKSKEWEKIKSELEAKLAELSKRL 101 (769)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555554 333444445556777777777777776665555554445555555555544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 002662 313 AEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDE 363 (895)
Q Consensus 313 ~el~~~k~kLEsEleEL~~qLee~e~~~aeL~kelkkLe~qI~ELkrqLEe 363 (895)
.++..+...|...|.+-...+.+|.+.+...+.++..|...|+.
T Consensus 102 -------~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~ 145 (769)
T PF05911_consen 102 -------AESAAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLES 145 (769)
T ss_pred -------HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 44445555555556666666666666666666666666655544
No 167
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=95.77 E-value=4.1 Score=47.93 Aligned_cols=98 Identities=10% Similarity=0.078 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 002662 400 AASRRELEQQEVINKLQIAEKQSSLQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLR 479 (895)
Q Consensus 400 e~~~~~eElee~l~KLeE~EKk~r~elEdLk~kLE~~ra~l~~lEkk~reLEkqLeEEk~~~~~lqkei~elE~EireLe 479 (895)
...+.+++....+..+++....+..++-..+.+...+.+++.++.++++.+.-..++....... +...-+++.
T Consensus 202 ~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~-------~~da~~ql~ 274 (596)
T KOG4360|consen 202 DCVKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQA-------YKDAQRQLT 274 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-------HHhhHHHHH
Confidence 4444455544444444444444444444445555556666666666666555544444333322 222233444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 480 EELESEKAAREVAWAKVSGLELDIL 504 (895)
Q Consensus 480 eELE~ek~e~eel~d~v~~LE~ELe 504 (895)
.|+..+...|.+.+......+.+|.
T Consensus 275 aE~~EleDkyAE~m~~~~EaeeELk 299 (596)
T KOG4360|consen 275 AELEELEDKYAECMQMLHEAEEELK 299 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444455555555555555554
No 168
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=95.75 E-value=4.3 Score=49.48 Aligned_cols=29 Identities=28% Similarity=0.195 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002662 244 FRSLQRSNTELRKQLESQVLEIDKLRNEN 272 (895)
Q Consensus 244 Vr~Le~e~~eLr~qLee~~~~i~~lr~Ei 272 (895)
+..++....+++..+....+...++...+
T Consensus 30 ~~e~e~~~~~ar~~~~~a~e~~~~lq~~~ 58 (916)
T KOG0249|consen 30 VPELEHSLPEARKDLIKAEEMNTKLQRDI 58 (916)
T ss_pred cHHHHhhhhhhHHHHHHHHHHHHHHhhhh
Confidence 33444444444444444444444444443
No 169
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=95.74 E-value=12 Score=50.16 Aligned_cols=14 Identities=14% Similarity=0.344 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHH
Q 002662 242 DDFRSLQRSNTELR 255 (895)
Q Consensus 242 d~Vr~Le~e~~eLr 255 (895)
..|..|...+..|.
T Consensus 220 ~~i~~l~e~~~~~~ 233 (1353)
T TIGR02680 220 DELTDVADALEQLD 233 (1353)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444443
No 170
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=95.69 E-value=3.6 Score=43.74 Aligned_cols=51 Identities=20% Similarity=0.142 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 308 KQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELK 358 (895)
Q Consensus 308 ~ekeL~el~~~k~kLEsEleEL~~qLee~e~~~aeL~kelkkLe~qI~ELk 358 (895)
.++........+.++..+...+...|..++...++|-+...+++..|..++
T Consensus 60 ~~~~~~~~~~~i~~~~~erdq~~~dL~s~E~sfsdl~~ryek~K~vi~~~k 110 (207)
T PF05010_consen 60 KQKQKELSEAEIQKLLKERDQAYADLNSLEKSFSDLHKRYEKQKEVIEGYK 110 (207)
T ss_pred HHhhHHhHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 333344445555555555556666666666666666666666666655555
No 171
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=95.68 E-value=1.4 Score=52.56 Aligned_cols=45 Identities=11% Similarity=0.155 Sum_probs=30.8
Q ss_pred cccccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002662 227 LKGIGICSPDGPLSLDDFRSLQRSNTELRKQLESQVLEIDKLRNE 271 (895)
Q Consensus 227 ~~G~~~sa~~~~~~ld~Vr~Le~e~~eLr~qLee~~~~i~~lr~E 271 (895)
+++...+.+.++.--+++++|+.....|..|..-+.+.+......
T Consensus 96 p~~~~~s~~~~~~yQerLaRLe~dkesL~LQvsvLteqVeaQgEK 140 (861)
T KOG1899|consen 96 PSMSTVSCPEYPEYQERLARLEMDKESLQLQVSVLTEQVEAQGEK 140 (861)
T ss_pred CCCCCccCCcchHHHHHHHHHhcchhhheehHHHHHHHHHHhhhh
Confidence 345555778888778888888888888877766665554444333
No 172
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.67 E-value=7.8 Score=47.47 Aligned_cols=41 Identities=10% Similarity=0.126 Sum_probs=34.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 002662 240 SLDDFRSLQRSNTELRKQLESQVLEIDKLRNENRVVVERHE 280 (895)
Q Consensus 240 ~ld~Vr~Le~e~~eLr~qLee~~~~i~~lr~Ei~~i~er~e 280 (895)
+-++|..|......+......+...+-+.+.++.++.+++.
T Consensus 614 N~~Kv~TL~~~~k~~~~~~~~~~~~i~~~q~e~~klqeq~~ 654 (1104)
T COG4913 614 NDAKVETLRETVKAMLSREDFYMIKIMRQQGEYIKLQEQAN 654 (1104)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 44889999999999998888889999999999877777644
No 173
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.59 E-value=7 Score=46.42 Aligned_cols=34 Identities=12% Similarity=0.339 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 315 ISRISAEQKHEMEDLNDRLSASMQSCTEANEIMK 348 (895)
Q Consensus 315 l~~~k~kLEsEleEL~~qLee~e~~~aeL~kelk 348 (895)
|.....++.+++.++.-.|+.....|.+++.+++
T Consensus 371 Las~glk~ds~Lk~leIalEqkkEec~kme~qLk 404 (654)
T KOG4809|consen 371 LASAGLKRDSKLKSLEIALEQKKEECSKMEAQLK 404 (654)
T ss_pred HHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444444444444444443333
No 174
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=95.59 E-value=4.4 Score=46.41 Aligned_cols=19 Identities=16% Similarity=0.205 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 002662 242 DDFRSLQRSNTELRKQLES 260 (895)
Q Consensus 242 d~Vr~Le~e~~eLr~qLee 260 (895)
.++..|+.....|+.++..
T Consensus 81 ~~l~~l~~~~~~l~a~~~~ 99 (423)
T TIGR01843 81 ADAAELESQVLRLEAEVAR 99 (423)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 3455555555555544443
No 175
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.52 E-value=7.5 Score=46.20 Aligned_cols=139 Identities=17% Similarity=0.110 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 317 RISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRRVDRENAEADLKAAVQKSQLETQEKLKR 396 (895)
Q Consensus 317 ~~k~kLEsEleEL~~qLee~e~~~aeL~kelkkLe~qI~ELkrqLEeEr~~~~EElEe~~~eLk~qLqkl~~El~eerkk 396 (895)
+.+...+.++.+|.+.+..+.....+....+..++..+..|...... +..++..++-.++..++.+.+++.++.+..+.
T Consensus 331 EeIe~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~glk-~ds~Lk~leIalEqkkEec~kme~qLkkAh~~ 409 (654)
T KOG4809|consen 331 EEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLK-RDSKLKSLEIALEQKKEECSKMEAQLKKAHNI 409 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444555444444444444444444343333333322211 11112222222222234455555554443333
Q ss_pred HHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 397 LSDA-----ASRRELEQQEVINKLQIAEKQSSLQVESLKLKLDETRERLVTSDNKVRLLETQVCK 456 (895)
Q Consensus 397 ~eee-----~~~~~eElee~l~KLeE~EKk~r~elEdLk~kLE~~ra~l~~lEkk~reLEkqLeE 456 (895)
..+. ....+..++.+....+...++..++++.+..=+......-.+-++++-.++..+.+
T Consensus 410 ~ddar~~pe~~d~i~~le~e~~~y~de~~kaqaevdrlLeilkeveneKnDkdkkiaeler~~kd 474 (654)
T KOG4809|consen 410 EDDARMNPEFADQIKQLEKEASYYRDECGKAQAEVDRLLEILKEVENEKNDKDKKIAELERHMKD 474 (654)
T ss_pred hHhhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhcCchhhh
Confidence 3221 22344455555555555555555554433322222222223334555555544443
No 176
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.49 E-value=11 Score=47.90 Aligned_cols=21 Identities=10% Similarity=-0.035 Sum_probs=10.6
Q ss_pred CCCceeecCccccCCCCcccc
Q 002662 156 STNGTYVNCERFKKNSSEVNI 176 (895)
Q Consensus 156 StNGTfVNg~rI~kng~~~~L 176 (895)
|.--|+|++.=|+=-|++..|
T Consensus 53 SGKSSiVcAIcLglgG~Pk~l 73 (1072)
T KOG0979|consen 53 SGKSSIVCAICLGLGGKPKLL 73 (1072)
T ss_pred CCchHHHHHHHHHcCCChhhc
Confidence 333667776655442344444
No 177
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=95.37 E-value=6.1 Score=44.28 Aligned_cols=58 Identities=14% Similarity=0.074 Sum_probs=32.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 002662 460 VSASWKKRVEELENEIKKLREELESEKAAREVAWAKVSGLELDILAATRDLDFERRRL 517 (895)
Q Consensus 460 ~~~~lqkei~elE~EireLeeELE~ek~e~eel~d~v~~LE~ELeka~r~LE~Ek~rL 517 (895)
.+..+..++..++.+++.+-.|-+.+........+.-..|..++...+..|.....-|
T Consensus 235 EIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL 292 (306)
T PF04849_consen 235 EITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAML 292 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555566666665555555555555555555555555555555544444
No 178
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=95.35 E-value=2.3 Score=49.61 Aligned_cols=18 Identities=6% Similarity=0.200 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 002662 426 VESLKLKLDETRERLVTS 443 (895)
Q Consensus 426 lEdLk~kLE~~ra~l~~l 443 (895)
+..|+++++-.+.....+
T Consensus 344 ~~~L~r~~~~~~~~y~~l 361 (444)
T TIGR03017 344 MSVLQRDVENAQRAYDAA 361 (444)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444333333
No 179
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=95.31 E-value=5.6 Score=43.48 Aligned_cols=25 Identities=28% Similarity=0.387 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 426 VESLKLKLDETRERLVTSDNKVRLL 450 (895)
Q Consensus 426 lEdLk~kLE~~ra~l~~lEkk~reL 450 (895)
+.+...+|.+++..+.......++-
T Consensus 187 L~~~~~kL~Dl~~~l~eA~~~~~ea 211 (264)
T PF06008_consen 187 LNDYNAKLQDLRDLLNEAQNKTREA 211 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444443333333
No 180
>TIGR02500 type_III_yscD type III secretion apparatus protein, YscD/HrpQ family. This family represents a conserved protein of bacterial type III secretion systems. Gene symbols are variable from species to species. Members are designated YscD in Yersinia, HrpQ in Pseudomonas syringae, and EscD in enteropathogenic Escherichia coli. In the Chlamydiae, this model describes the C-terminal 400 residues of a longer protein.
Probab=95.19 E-value=0.086 Score=61.22 Aligned_cols=83 Identities=16% Similarity=0.257 Sum_probs=62.2
Q ss_pred CcceeEEecCCceEec-CCCCCCceecCCCcccccceEEEEeccCCCCCCCCCCCCceEEEEeCCCCceeecC--ccccC
Q 002662 93 HQGINILLTADEHCIG-RLVDDAHFQIDSNAVSANHCKIYRKKFASGDLDHSPSGCSSVCLKDTSTNGTYVNC--ERFKK 169 (895)
Q Consensus 93 ~~g~~i~L~~~~~~IG-R~~~~~di~i~~~~IS~~Hc~I~~~~~~~~~~~~~~~~~~~~~L~D~StNGTfVNg--~rI~k 169 (895)
..|..+.|....|+|| +.++| |+++.++.||+.||.|..... .++|.+ +..+.|+|| .....
T Consensus 10 ~~G~~~~L~~g~~~iG~~~~~~-di~L~d~~~~~~h~~l~v~~~-------------~~~l~~-~~~~~~~~g~~~~~~~ 74 (410)
T TIGR02500 10 HRGAELPLPEGNLVLGTDAADC-DIVLSDGGIAAVHVSLHVRLE-------------GVTLAG-AVEPAWEEGGVLPDEE 74 (410)
T ss_pred CCCcEEECCCCceEeccCCCCc-EEEeCCCCccchheEEEEcCc-------------eEEEec-CCcceeECCcccccCC
Confidence 3577899999999999 99988 999999999999999988543 266665 466799999 55554
Q ss_pred CCCccccCCCCEEEEccCCCCCccEEEEEcc
Q 002662 170 NSSEVNIDHGDIISFAAPPQHDLAFAFVFRD 200 (895)
Q Consensus 170 ng~~~~L~~GDvIsLg~~p~~e~af~FVF~d 200 (895)
+ ..|..+-.|.++. ..|+|+.
T Consensus 75 -g--~~l~~~~~l~~g~-------~~~~~g~ 95 (410)
T TIGR02500 75 -G--TPLPSGTPLLVAG-------VAFALGE 95 (410)
T ss_pred -C--CccCCCCceecce-------eEEeccC
Confidence 3 3455566666552 4566665
No 181
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=95.18 E-value=7.3 Score=44.06 Aligned_cols=31 Identities=19% Similarity=0.186 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002662 242 DDFRSLQRSNTELRKQLESQVLEIDKLRNEN 272 (895)
Q Consensus 242 d~Vr~Le~e~~eLr~qLee~~~~i~~lr~Ei 272 (895)
.-+.-++-...+|..-+.+....+..+..++
T Consensus 68 P~Lely~~~c~EL~~~I~egr~~~~~~E~~~ 98 (325)
T PF08317_consen 68 PMLELYQFSCRELKKYISEGRQIFEEIEEET 98 (325)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355555555666655555544444444443
No 182
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=95.06 E-value=3.8 Score=40.24 Aligned_cols=30 Identities=27% Similarity=0.364 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002662 243 DFRSLQRSNTELRKQLESQVLEIDKLRNEN 272 (895)
Q Consensus 243 ~Vr~Le~e~~eLr~qLee~~~~i~~lr~Ei 272 (895)
++..|..++..+......+...+..++.++
T Consensus 4 e~~~l~~e~~~~~~~~~~~~~~~~~~~~dl 33 (132)
T PF07926_consen 4 ELSSLQSELQRLKEQEEDAEEQLQSLREDL 33 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666655555555555555554
No 183
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=95.04 E-value=10 Score=45.12 Aligned_cols=30 Identities=10% Similarity=0.273 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 472 ENEIKKLREELESEKAAREVAWAKVSGLEL 501 (895)
Q Consensus 472 E~EireLeeELE~ek~e~eel~d~v~~LE~ 501 (895)
+..+..+...|........++.+.+..|.+
T Consensus 381 q~~l~~~~~~l~~i~~~q~~~~e~L~~Lrk 410 (570)
T COG4477 381 QDNLEEIEKALTDIEDEQEKVQEHLTSLRK 410 (570)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 333333333344444444444444444433
No 184
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=94.79 E-value=1.5 Score=47.73 Aligned_cols=25 Identities=24% Similarity=0.266 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 392 EKLKRLSDAASRRELEQQEVINKLQ 416 (895)
Q Consensus 392 eerkk~eee~~~~~eElee~l~KLe 416 (895)
+|+.-+-..+++.|.+++..+.+|.
T Consensus 7 EWKeGL~~~aLqKIqelE~QldkLk 31 (307)
T PF10481_consen 7 EWKEGLPTRALQKIQELEQQLDKLK 31 (307)
T ss_pred HHhccCCHHHHHHHHHHHHHHHHHH
Confidence 3444444444455555555555444
No 185
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=94.78 E-value=4.6 Score=41.25 Aligned_cols=118 Identities=12% Similarity=0.277 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 242 DDFRSLQRSNTELRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKESV-------SISYLHQLKVLRDMLDAKQKELAE 314 (895)
Q Consensus 242 d~Vr~Le~e~~eLr~qLee~~~~i~~lr~Ei~~i~er~e~El~El~e~l-------rkklE~QL~ELq~kLee~ekeL~e 314 (895)
.++..|..++.+++.++...+.+++.|....+..+.+ |.++.... .+..-.+..+++.+|..++.+-..
T Consensus 27 ~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~r----L~eVS~~f~~ysE~dik~AYe~A~~lQ~~L~~~re~E~q 102 (159)
T PF05384_consen 27 QEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQR----LAEVSRNFDRYSEEDIKEAYEEAHELQVRLAMLREREKQ 102 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566788888888888888888888888887777766 55555444 244555577777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 002662 315 ISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDE 363 (895)
Q Consensus 315 l~~~k~kLEsEleEL~~qLee~e~~~aeL~kelkkLe~qI~ELkrqLEe 363 (895)
|..+...|+..+..|...++.++.....+.-.+.=|...+.++...+++
T Consensus 103 Lr~rRD~LErrl~~l~~tierAE~l~sqi~vvl~yL~~dl~~v~~~~e~ 151 (159)
T PF05384_consen 103 LRERRDELERRLRNLEETIERAENLVSQIGVVLNYLSGDLQQVSEQIED 151 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 7777777777777777777777777777776666666666666655544
No 186
>PRK10869 recombination and repair protein; Provisional
Probab=94.72 E-value=14 Score=44.95 Aligned_cols=13 Identities=15% Similarity=-0.138 Sum_probs=10.0
Q ss_pred cccccCccccccc
Q 002662 582 SRTIVGEKLPNGH 594 (895)
Q Consensus 582 ~~mSgGEKs~~~~ 594 (895)
..+||||++-+..
T Consensus 429 k~lSgGe~~Ri~L 441 (553)
T PRK10869 429 KVASGGELSRIAL 441 (553)
T ss_pred hhCCHHHHHHHHH
Confidence 5789999886654
No 187
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=94.58 E-value=15 Score=44.69 Aligned_cols=35 Identities=14% Similarity=0.170 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 405 ELEQQEVINKLQIAEKQSSLQVESLKLKLDETRER 439 (895)
Q Consensus 405 ~eElee~l~KLeE~EKk~r~elEdLk~kLE~~ra~ 439 (895)
+.++++.+..+....++....++++...++..+..
T Consensus 303 L~ele~RL~~l~~LkrKyg~s~e~l~~~~~~l~~e 337 (563)
T TIGR00634 303 LNEIEERLAQIKRLKRKYGASVEEVLEYAEKIKEE 337 (563)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444333
No 188
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=94.56 E-value=11 Score=43.10 Aligned_cols=39 Identities=26% Similarity=0.288 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 002662 242 DDFRSLQRSNTELRKQLESQVLEIDKLRNENRVVVERHE 280 (895)
Q Consensus 242 d~Vr~Le~e~~eLr~qLee~~~~i~~lr~Ei~~i~er~e 280 (895)
|-...|++++..|+.|++.-+...+.+....+.++..|.
T Consensus 291 D~~~~L~k~vQ~L~AQle~~R~q~e~~q~~~~s~~d~~~ 329 (593)
T KOG4807|consen 291 DGHEALEKEVQALRAQLEAWRLQGEAPQSALRSQEDGHI 329 (593)
T ss_pred cchHHHHHHHHHHHHHHHHHHHhccCchhhHhhhhhccC
Confidence 335667777888887777776666666665555544443
No 189
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=94.46 E-value=10 Score=42.37 Aligned_cols=198 Identities=18% Similarity=0.181 Sum_probs=116.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 315 ISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRRVDRENAEADLKAAVQKSQLETQEKL 394 (895)
Q Consensus 315 l~~~k~kLEsEleEL~~qLee~e~~~aeL~kelkkLe~qI~ELkrqLEeEr~~~~EElEe~~~eLk~qLqkl~~El~eer 394 (895)
....+.+++..+.++...|+.-......+......|...+.+|-.+++.-.. .++-+.+.+. +..++......
T Consensus 107 Rkea~~~fqvtL~diqktla~~~~~n~klre~NieL~eKlkeL~eQy~~re~-hidk~~e~ke-l~~ql~~aKlq----- 179 (391)
T KOG1850|consen 107 RKEAVEQFQVTLKDIQKTLAEGRSKNDKLREDNIELSEKLKELGEQYEEREK-HIDKQIQKKE-LWEQLGKAKLQ----- 179 (391)
T ss_pred HHHHHHHHHhHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH-HHHHHhHHHHH-----
Confidence 3445667777788888888777777777777776776666666644433111 1111111111 22222221111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 002662 395 KRLSDAASRRELEQQEVINKLQIAEK--------QSSLQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKK 466 (895)
Q Consensus 395 kk~eee~~~~~eElee~l~KLeE~EK--------k~r~elEdLk~kLE~~ra~l~~lEkk~reLEkqLeEEk~~~~~lqk 466 (895)
.+.-+......+..+++ -++.-+++++..=-.++.++..+-.+-.+|...|..-...+..+..
T Consensus 180 ---------~~~~l~a~~ee~~~~e~~~glEKd~lak~~~e~~~~~e~qlK~ql~lY~aKyeefq~tl~KSNE~F~~fK~ 250 (391)
T KOG1850|consen 180 ---------EIKLLTAKLEEASIQEKKSGLEKDELAKIMLEEMKQVEGQLKEQLALYMAKYEEFQTTLAKSNELFTKFKQ 250 (391)
T ss_pred ---------HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 00001111111111111 1112233433333345556666677788888888888888888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 467 RVEELENEIKKLREELESEKAAREVAWAKVSGLELDILAATRDLDFERRRLKAARERIMLRETQLR 532 (895)
Q Consensus 467 ei~elE~EireLeeELE~ek~e~eel~d~v~~LE~ELeka~r~LE~Ek~rLq~~rErL~~~eqqlk 532 (895)
++..+...+..++.+.-..+..++.+...+ ..|...+..++.+...++..+++|+.....++
T Consensus 251 E~ekmtKk~kklEKE~l~wr~K~e~aNk~v----L~la~ekt~~~k~~~~lq~kiq~LekLcRALq 312 (391)
T KOG1850|consen 251 EMEKMTKKIKKLEKETLIWRTKWENANKAV----LQLAEEKTVRDKEYETLQKKIQRLEKLCRALQ 312 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHH----HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988888777776 34444556666666777777777777766664
No 190
>PF13166 AAA_13: AAA domain
Probab=94.42 E-value=18 Score=44.93 Aligned_cols=31 Identities=10% Similarity=-0.099 Sum_probs=21.6
Q ss_pred ccccccccCCCCCCCcccccCcccccccccc
Q 002662 567 NTSVDIDLCVPDGENSRTIVGEKLPNGHHSN 597 (895)
Q Consensus 567 s~~lelDl~p~ekrl~~mSgGEKs~~~~~~~ 597 (895)
...+.+......+....||-|||.++.+--+
T Consensus 484 ~~~y~l~~~~~~~~~~~LSEGEk~~iAf~yF 514 (712)
T PF13166_consen 484 DKGYKLQRKGGSKPAKILSEGEKRAIAFAYF 514 (712)
T ss_pred CCeEEEEECCCCcccCccCHHHHHHHHHHHH
Confidence 4456666654333678999999999998444
No 191
>KOG2293 consensus Daxx-interacting protein MSP58/p78, contains FHA domain [Transcription; Signal transduction mechanisms]
Probab=94.40 E-value=0.082 Score=61.77 Aligned_cols=82 Identities=20% Similarity=0.338 Sum_probs=65.3
Q ss_pred EEecCCceEecCCCCCCceecC------CCcccccceEEEEeccCCCCCCCCCCCCceEEEEeCCCCceeecCccccCCC
Q 002662 98 ILLTADEHCIGRLVDDAHFQID------SNAVSANHCKIYRKKFASGDLDHSPSGCSSVCLKDTSTNGTYVNCERFKKNS 171 (895)
Q Consensus 98 i~L~~~~~~IGR~~~~~di~i~------~~~IS~~Hc~I~~~~~~~~~~~~~~~~~~~~~L~D~StNGTfVNg~rI~kng 171 (895)
..+.+.+++|||....+-+-|| ...|||+.+.|..... ..+||+....-..||||..|.. |
T Consensus 443 h~mrk~EVtlGRat~d~~VDIDLgkegpatKISRRQa~IkL~n~------------GsF~IkNlGK~~I~vng~~l~~-g 509 (547)
T KOG2293|consen 443 HYMRKKEVTLGRATGDLKVDIDLGKEGPATKISRRQALIKLKND------------GSFFIKNLGKRSILVNGGELDR-G 509 (547)
T ss_pred hhhcCcceEeeccCCCcceeeeccccCccceeeccceeEEeccC------------CcEEeccCcceeEEeCCccccC-C
Confidence 3467789999999875333333 2489999999987643 1399999888899999999999 8
Q ss_pred CccccCCCCEEEEccCCCCCccEEEEEc
Q 002662 172 SEVNIDHGDIISFAAPPQHDLAFAFVFR 199 (895)
Q Consensus 172 ~~~~L~~GDvIsLg~~p~~e~af~FVF~ 199 (895)
....|.+..+|.|.. +.|||.
T Consensus 510 q~~~L~~nclveIrg-------~~FiF~ 530 (547)
T KOG2293|consen 510 QKVILKNNCLVEIRG-------LRFIFE 530 (547)
T ss_pred ceEEeccCcEEEEcc-------ceEEEe
Confidence 899999999999873 677875
No 192
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.33 E-value=4.8 Score=50.22 Aligned_cols=38 Identities=18% Similarity=0.288 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 417 IAEKQSSLQVESLKLKLDETRERLVTSDNKVRLLETQV 454 (895)
Q Consensus 417 E~EKk~r~elEdLk~kLE~~ra~l~~lEkk~reLEkqL 454 (895)
..|++...+|+.+..++..+++.+..+.+++.....++
T Consensus 632 ~AEr~~~~EL~~~~~~l~~l~~si~~lk~k~~~Q~~~i 669 (717)
T PF10168_consen 632 EAEREFKKELERMKDQLQDLKASIEQLKKKLDYQQRQI 669 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555544444433333
No 193
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=94.25 E-value=17 Score=45.12 Aligned_cols=16 Identities=19% Similarity=0.304 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 002662 246 SLQRSNTELRKQLESQ 261 (895)
Q Consensus 246 ~Le~e~~eLr~qLee~ 261 (895)
.|+.++..|+.|+...
T Consensus 433 ~Le~elekLk~eilKA 448 (762)
T PLN03229 433 ELEGEVEKLKEQILKA 448 (762)
T ss_pred cHHHHHHHHHHHHHhc
Confidence 4666666666655544
No 194
>PRK10869 recombination and repair protein; Provisional
Probab=94.19 E-value=18 Score=44.03 Aligned_cols=6 Identities=33% Similarity=0.949 Sum_probs=3.6
Q ss_pred HHhhhh
Q 002662 806 LCEMIG 811 (895)
Q Consensus 806 ~~~~~~ 811 (895)
|..|||
T Consensus 530 iARMl~ 535 (553)
T PRK10869 530 LARLLG 535 (553)
T ss_pred HHHHhC
Confidence 566664
No 195
>KOG1892 consensus Actin filament-binding protein Afadin [Cytoskeleton]
Probab=94.07 E-value=0.16 Score=62.48 Aligned_cols=93 Identities=23% Similarity=0.288 Sum_probs=69.2
Q ss_pred CceEEEEeecccccccCcceeEEecCCceEecCCCCC-CceecCCCcccccceEEEEeccCCCCCCCCCCCCceEEEEeC
Q 002662 77 KVWGVLTAISNNARKRHQGINILLTADEHCIGRLVDD-AHFQIDSNAVSANHCKIYRKKFASGDLDHSPSGCSSVCLKDT 155 (895)
Q Consensus 77 ~~WG~L~~i~~~~~~r~~g~~i~L~~~~~~IGR~~~~-~di~i~~~~IS~~Hc~I~~~~~~~~~~~~~~~~~~~~~L~D~ 155 (895)
....+|+-++.+-. .....|.|..+..-+|-...+ ..|.+..|.|=.+||-|..-.. .|.+.=.
T Consensus 354 ~~lPvLve~s~dG~--~s~~ri~L~~~vtEVGs~~~~~~~iqLfGP~IqprHc~it~meG-------------VvTvTP~ 418 (1629)
T KOG1892|consen 354 EKLPVLVELSPDGS--DSRKRIRLQLSVTEVGSEKLDDNSIQLFGPGIQPRHCDITNMEG-------------VVTVTPR 418 (1629)
T ss_pred ccCcEEEEEcCCCC--CcceeEEeccCceeccccccCCcceeeeCCCCCccccchhhccc-------------eEEeccc
Confidence 34567777664321 111467788888899987653 2588899999999999975321 4777777
Q ss_pred CCC-ceeecCccccCCCCccccCCCCEEEEccC
Q 002662 156 STN-GTYVNCERFKKNSSEVNIDHGDIISFAAP 187 (895)
Q Consensus 156 StN-GTfVNg~rI~kng~~~~L~~GDvIsLg~~ 187 (895)
++. -|||||.+|.. ...|++|++|.||..
T Consensus 419 ~~DA~t~VnGh~isq---ttiL~~G~~v~fGa~ 448 (1629)
T KOG1892|consen 419 SMDAETYVNGHRISQ---TTILQSGMKVQFGAS 448 (1629)
T ss_pred ccchhhhccceecch---hhhhccCCEEEeccc
Confidence 777 89999999986 578999999999953
No 196
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=94.04 E-value=2.2 Score=41.61 Aligned_cols=43 Identities=21% Similarity=0.374 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 316 SRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELK 358 (895)
Q Consensus 316 ~~~k~kLEsEleEL~~qLee~e~~~aeL~kelkkLe~qI~ELk 358 (895)
...+..|+.++.+|+.++..+-..+.+-...+..|+..|.+++
T Consensus 67 ~~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK 109 (120)
T PF12325_consen 67 KKEVEELEQELEELQQRYQTLLELLGEKSEEVEELRADVQDLK 109 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 3344444455555555555555555444444445554444444
No 197
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=94.00 E-value=18 Score=43.29 Aligned_cols=10 Identities=20% Similarity=0.099 Sum_probs=4.3
Q ss_pred cccceeeccc
Q 002662 214 KRKAEEYVSD 223 (895)
Q Consensus 214 ~eKS~am~G~ 223 (895)
+.|.-.|+|.
T Consensus 51 kVK~L~L~GQ 60 (570)
T COG4477 51 KVKKLHLTGQ 60 (570)
T ss_pred HHhcCcccCc
Confidence 3344444444
No 198
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=93.91 E-value=9.8 Score=42.78 Aligned_cols=85 Identities=19% Similarity=0.171 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 420 KQSSLQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAREVAWAKVSGL 499 (895)
Q Consensus 420 Kk~r~elEdLk~kLE~~ra~l~~lEkk~reLEkqLeEEk~~~~~lqkei~elE~EireLeeELE~ek~e~eel~d~v~~L 499 (895)
++++.+-+.|..+|-..+.-++....++..|+..+...+.....++-+++++..++++.+++-..+.++..++..-...|
T Consensus 102 ~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layqq~L 181 (401)
T PF06785_consen 102 EQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEALAYQQEL 181 (401)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHH
Confidence 45566667777888888887777778888888888777777777788899999999999988888888888888888777
Q ss_pred HHHHH
Q 002662 500 ELDIL 504 (895)
Q Consensus 500 E~ELe 504 (895)
-.++.
T Consensus 182 ~~eyQ 186 (401)
T PF06785_consen 182 NDEYQ 186 (401)
T ss_pred HHHhh
Confidence 77664
No 199
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=93.83 E-value=1.3 Score=47.01 Aligned_cols=67 Identities=25% Similarity=0.341 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 002662 297 QLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDE 363 (895)
Q Consensus 297 QL~ELq~kLee~ekeL~el~~~k~kLEsEleEL~~qLee~e~~~aeL~kelkkLe~qI~ELkrqLEe 363 (895)
.+.+++.+|++..++..++...+..++.++++++.+|+.++..++.|+..++++...+.+|+..+++
T Consensus 136 ~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~E 202 (290)
T COG4026 136 DYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDE 202 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHH
Confidence 3566777777777778888888888888888888888888888888888888777777776655543
No 200
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=93.82 E-value=18 Score=42.74 Aligned_cols=22 Identities=32% Similarity=0.543 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 002662 464 WKKRVEELENEIKKLREELESE 485 (895)
Q Consensus 464 lqkei~elE~EireLeeELE~e 485 (895)
++.++..++.++..++..+...
T Consensus 296 ~~~~l~~~~~~l~~a~~~l~~~ 317 (457)
T TIGR01000 296 LNQKLLELESKIKSLKEDSQKG 317 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHhCC
Confidence 3555566666666666655554
No 201
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=93.75 E-value=22 Score=43.63 Aligned_cols=12 Identities=17% Similarity=0.177 Sum_probs=6.0
Q ss_pred EEEcccccCCCc
Q 002662 196 FVFRDVSRSTPT 207 (895)
Q Consensus 196 FVF~dtlv~~~~ 207 (895)
|+|.+...+.|.
T Consensus 32 ~~~s~s~g~sP~ 43 (716)
T KOG4593|consen 32 DISSSSPGSSPN 43 (716)
T ss_pred chhccCCCCCcc
Confidence 444445555554
No 202
>PLN02939 transferase, transferring glycosyl groups
Probab=93.67 E-value=29 Score=44.69 Aligned_cols=65 Identities=18% Similarity=0.247 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH----hhHHH--HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 002662 488 AREVAWAKVSGLELDILAAT----RDLDF--ERRRLKAARERIMLRETQLRAFYSTTEEISVLFARQQEQL 552 (895)
Q Consensus 488 e~eel~d~v~~LE~ELeka~----r~LE~--Ek~rLq~~rErL~~~eqqlkaeiEk~EEiee~rk~~~~qL 552 (895)
..+++.+++..|+.-|+++. +-+-+ -.+.++...+||+..-.++.++++.+.+.-..|.....+|
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (977)
T PLN02939 325 QNQDLRDKVDKLEASLKEANVSKFSSYKVELLQQKLKLLEERLQASDHEIHSYIQLYQESIKEFQDTLSKL 395 (977)
T ss_pred cchHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555554321 11111 1123444445555555555555555554444444433333
No 203
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=93.60 E-value=21 Score=42.91 Aligned_cols=20 Identities=15% Similarity=0.295 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 002662 315 ISRISAEQKHEMEDLNDRLS 334 (895)
Q Consensus 315 l~~~k~kLEsEleEL~~qLe 334 (895)
...+..+++..+..|..++.
T Consensus 185 fl~rtl~~e~~~~~L~~~~~ 204 (511)
T PF09787_consen 185 FLKRTLKKEIERQELEERPK 204 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44555555556666666655
No 204
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=93.55 E-value=3.8 Score=47.05 Aligned_cols=16 Identities=25% Similarity=0.372 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 002662 377 ADLKAAVQKSQLETQE 392 (895)
Q Consensus 377 ~eLk~qLqkl~~El~e 392 (895)
-.++.+|.+++.|+.+
T Consensus 331 v~IKqAl~kLk~EI~q 346 (359)
T PF10498_consen 331 VKIKQALTKLKQEIKQ 346 (359)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445667766666655
No 205
>PF13514 AAA_27: AAA domain
Probab=93.55 E-value=34 Score=45.08 Aligned_cols=16 Identities=19% Similarity=0.200 Sum_probs=11.6
Q ss_pred ccCcccccccCCcccc
Q 002662 624 GQNTQEAEFTSGDRTC 639 (895)
Q Consensus 624 ~~~~~~~~~~~~~~~~ 639 (895)
+..+|-.=||.-.|.+
T Consensus 1080 s~~~QVI~FTch~~l~ 1095 (1111)
T PF13514_consen 1080 SRRRQVIYFTCHEHLV 1095 (1111)
T ss_pred ccCCeEEEEeccHHHH
Confidence 4567888888777763
No 206
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=93.52 E-value=15 Score=45.52 Aligned_cols=31 Identities=13% Similarity=-0.034 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 002662 431 LKLDETRERLVTSDNKVRLLETQVCKEQNVS 461 (895)
Q Consensus 431 ~kLE~~ra~l~~lEkk~reLEkqLeEEk~~~ 461 (895)
-+|-.++...+.|++++++..+.++-.+.+.
T Consensus 427 ~El~sLqSlN~~Lq~ql~es~k~~e~lq~kn 457 (861)
T PF15254_consen 427 LELFSLQSLNMSLQNQLQESLKSQELLQSKN 457 (861)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhHHHHHHhH
Confidence 3344455555555555555544444443333
No 207
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=93.50 E-value=0.98 Score=47.20 Aligned_cols=79 Identities=24% Similarity=0.379 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 426 VESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAREVAWAKVSGLELDIL 504 (895)
Q Consensus 426 lEdLk~kLE~~ra~l~~lEkk~reLEkqLeEEk~~~~~lqkei~elE~EireLeeELE~ek~e~eel~d~v~~LE~ELe 504 (895)
+..+......+..++..+..++..++..+......+..++..+..++.+++.+..+|....+..+.+.+-+.+|..++.
T Consensus 83 Lael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~ 161 (194)
T PF08614_consen 83 LAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLN 161 (194)
T ss_dssp -------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333344444444444444444444444444444455555555555555555555555555555544444443
No 208
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=93.45 E-value=1.4 Score=46.17 Aligned_cols=21 Identities=19% Similarity=0.313 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 002662 242 DDFRSLQRSNTELRKQLESQV 262 (895)
Q Consensus 242 d~Vr~Le~e~~eLr~qLee~~ 262 (895)
..+..++..+..++.+|.++.
T Consensus 67 ~~~~~le~~~~~l~~ELael~ 87 (194)
T PF08614_consen 67 AQISSLEQKLAKLQEELAELY 87 (194)
T ss_dssp ---------------------
T ss_pred ccccccccccccccccccccc
Confidence 445555566666654444443
No 209
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.38 E-value=20 Score=41.93 Aligned_cols=37 Identities=11% Similarity=0.217 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 002662 444 DNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLRE 480 (895)
Q Consensus 444 Ekk~reLEkqLeEEk~~~~~lqkei~elE~EireLee 480 (895)
..++++|...+..-+.-+.+...+-++++.++..+..
T Consensus 388 tqrikEi~gniRKq~~DI~Kil~etreLqkq~ns~se 424 (521)
T KOG1937|consen 388 TQRIKEIDGNIRKQEQDIVKILEETRELQKQENSESE 424 (521)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444434343344444444444433333
No 210
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=93.22 E-value=23 Score=42.20 Aligned_cols=42 Identities=7% Similarity=0.166 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 316 SRISAEQKHEMEDLNDRL-----SASMQSCTEANEIMKSQKVTIDEL 357 (895)
Q Consensus 316 ~~~k~kLEsEleEL~~qL-----ee~e~~~aeL~kelkkLe~qI~EL 357 (895)
...+.+|...+..+.+.+ .-.-..+..+++.+-.++..|+-.
T Consensus 166 d~E~arm~aqi~~l~eEmS~r~l~reakl~~~lqk~f~alEk~mka~ 212 (531)
T PF15450_consen 166 DNEVARMQAQITKLGEEMSLRFLKREAKLCSFLQKSFLALEKRMKAQ 212 (531)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555555555542 223334455555555555555543
No 211
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=93.11 E-value=21 Score=41.46 Aligned_cols=48 Identities=13% Similarity=0.084 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 293 SYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSC 340 (895)
Q Consensus 293 klE~QL~ELq~kLee~ekeL~el~~~k~kLEsEleEL~~qLee~e~~~ 340 (895)
.+..++.-|+.++.+.+..-.-...+..++..++-.|..++..++.+.
T Consensus 219 di~~kv~flerkv~eledd~~~~gd~~SrlkqEnlqLvhR~h~LEEq~ 266 (502)
T KOG0982|consen 219 DIERKVRFLERKVQELEDDQNIAGDRSSRLKQENLQLVHRYHMLEEQR 266 (502)
T ss_pred hHHHHHHHHHHHHHHhhcchhccccchhHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555444344455555555555555555544443
No 212
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=93.10 E-value=7.6 Score=37.01 Aligned_cols=65 Identities=18% Similarity=0.350 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 002662 295 LHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERN 366 (895)
Q Consensus 295 E~QL~ELq~kLee~ekeL~el~~~k~kLEsEleEL~~qLee~e~~~aeL~kelkkLe~qI~ELkrqLEeEr~ 366 (895)
+.+|..|+..++.......++ ..+..+|...+..+..+.......+..|+.+|.++.+.|+.++-
T Consensus 15 ~n~La~Le~slE~~K~S~~eL-------~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~eK~ 79 (107)
T PF09304_consen 15 QNRLASLERSLEDEKTSQGEL-------AKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLEDEKQ 79 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHH-------HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444 44444455555555555555555555566666666666666443
No 213
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=93.04 E-value=5.7 Score=38.74 Aligned_cols=39 Identities=21% Similarity=0.271 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 293 SYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLND 331 (895)
Q Consensus 293 klE~QL~ELq~kLee~ekeL~el~~~k~kLEsEleEL~~ 331 (895)
.++.++.+++.+++-.=.-+.+..+.+.+|+.++.++..
T Consensus 72 ~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK~ 110 (120)
T PF12325_consen 72 ELEQELEELQQRYQTLLELLGEKSEEVEELRADVQDLKE 110 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444443
No 214
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=92.98 E-value=22 Score=43.15 Aligned_cols=24 Identities=29% Similarity=0.310 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHH
Q 002662 516 RLKAARERIMLRETQLRAFYSTTE 539 (895)
Q Consensus 516 rLq~~rErL~~~eqqlkaeiEk~E 539 (895)
+|+.+++.++.--.++..+|+...
T Consensus 278 ~lk~a~eslm~ane~kdr~ie~lr 301 (861)
T KOG1899|consen 278 TLKNALESLMRANEQKDRFIESLR 301 (861)
T ss_pred HHHHHHHHHHhhchhhhhHHHHHH
Confidence 455555555555555555665555
No 215
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=92.94 E-value=4.8 Score=48.42 Aligned_cols=31 Identities=26% Similarity=0.375 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 466 KRVEELENEIKKLREELESEKAAREVAWAKV 496 (895)
Q Consensus 466 kei~elE~EireLeeELE~ek~e~eel~d~v 496 (895)
.+++.++.+|..|+.+|.......++|...+
T Consensus 474 rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l 504 (652)
T COG2433 474 REIRARDRRIERLEKELEEKKKRVEELERKL 504 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555554444444333333
No 216
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=92.88 E-value=0.3 Score=58.48 Aligned_cols=77 Identities=21% Similarity=0.214 Sum_probs=63.5
Q ss_pred eeEEecCCceEecCCCCCCceecCCCcccccceEEEEeccCCCCCCCCCCCCceEEEEeCCCCceeecCccccCCCCccc
Q 002662 96 INILLTADEHCIGRLVDDAHFQIDSNAVSANHCKIYRKKFASGDLDHSPSGCSSVCLKDTSTNGTYVNCERFKKNSSEVN 175 (895)
Q Consensus 96 ~~i~L~~~~~~IGR~~~~~di~i~~~~IS~~Hc~I~~~~~~~~~~~~~~~~~~~~~L~D~StNGTfVNg~rI~kng~~~~ 175 (895)
+.|.|.....+|||+|.- .|.+..+|++.-.+.-+-. .+.|.++-...|-|-|||.-|++ +....
T Consensus 25 ~~~~~~~~~~~~gr~pet---~i~d~~cs~~qv~l~a~~~-----------~~~v~~k~lg~np~~~~~~~~~~-~~~~~ 89 (526)
T TIGR01663 25 HFIHLDAGALFLGRGPET---GIRDRKCSKRQIELQADLE-----------KATVALKQLGVNPCGTGGLELKP-GGEGE 89 (526)
T ss_pred CeeccCCCceEEccCccc---ccchhhhchhhheeeeccc-----------CceEEEEEccCCCcccCceEecC-CCeee
Confidence 456677778899999865 8889999999988765432 12477788899999999999999 78899
Q ss_pred cCCCCEEEEccC
Q 002662 176 IDHGDIISFAAP 187 (895)
Q Consensus 176 L~~GDvIsLg~~ 187 (895)
|++||.+.|.+.
T Consensus 90 l~~g~~l~~v~~ 101 (526)
T TIGR01663 90 LGHGDLLEIVNG 101 (526)
T ss_pred ecCCCEEEEecc
Confidence 999999999864
No 217
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=92.84 E-value=8.2 Score=42.07 Aligned_cols=53 Identities=25% Similarity=0.326 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 444 DNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAREVAWAKV 496 (895)
Q Consensus 444 Ekk~reLEkqLeEEk~~~~~lqkei~elE~EireLeeELE~ek~e~eel~d~v 496 (895)
...+..|...+.+....+..+...+...+.+...|+.+|...+.........+
T Consensus 74 ~eEk~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~~ak~~L 126 (246)
T PF00769_consen 74 EEEKEQLEQELREAEAEIARLEEESERKEEEAEELQEELEEAREDEEEAKEEL 126 (246)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555566666666666666666666555444444433
No 218
>PRK12704 phosphodiesterase; Provisional
Probab=92.75 E-value=29 Score=42.00 Aligned_cols=15 Identities=20% Similarity=0.446 Sum_probs=9.4
Q ss_pred ccch-hhhhhhhhhhh
Q 002662 729 TMED-TIRTADLLASE 743 (895)
Q Consensus 729 ~~~~-~~~~~~~~~~~ 743 (895)
+++. .+-.||.|++-
T Consensus 414 ~~~a~IV~~ADaLsa~ 429 (520)
T PRK12704 414 SIEAVLVAAADAISAA 429 (520)
T ss_pred CHHHHHHHHHHHHhCc
Confidence 3344 77788877653
No 219
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=92.72 E-value=7.7 Score=48.47 Aligned_cols=8 Identities=25% Similarity=0.700 Sum_probs=5.0
Q ss_pred cceEEEEe
Q 002662 126 NHCKIYRK 133 (895)
Q Consensus 126 ~Hc~I~~~ 133 (895)
.||.+...
T Consensus 310 ~h~i~l~~ 317 (717)
T PF10168_consen 310 YHCILLEA 317 (717)
T ss_pred EEEEEecc
Confidence 57877543
No 220
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=92.67 E-value=16 Score=38.76 Aligned_cols=17 Identities=29% Similarity=0.516 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 002662 241 LDDFRSLQRSNTELRKQ 257 (895)
Q Consensus 241 ld~Vr~Le~e~~eLr~q 257 (895)
|+-|..|..++..++..
T Consensus 26 L~lIksLKeei~emkk~ 42 (201)
T PF13851_consen 26 LELIKSLKEEIAEMKKK 42 (201)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44455555555555533
No 221
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=92.66 E-value=8.7 Score=41.85 Aligned_cols=84 Identities=15% Similarity=0.182 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 002662 434 DETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAREVAWAKVSGLELDILAATRDLDFE 513 (895)
Q Consensus 434 E~~ra~l~~lEkk~reLEkqLeEEk~~~~~lqkei~elE~EireLeeELE~ek~e~eel~d~v~~LE~ELeka~r~LE~E 513 (895)
..++.....|+.+...++..+................|+.++.++..++..+..+.+.-..-...|..++..++..+..-
T Consensus 43 k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~~a 122 (246)
T PF00769_consen 43 KQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEAEIARLEEESERKEEEAEELQEELEEAREDEEEA 122 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444455555554444444444445555556666666666666666666655556666666666555555544
Q ss_pred HHHH
Q 002662 514 RRRL 517 (895)
Q Consensus 514 k~rL 517 (895)
+.+|
T Consensus 123 k~~L 126 (246)
T PF00769_consen 123 KEEL 126 (246)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 222
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=92.62 E-value=26 Score=41.19 Aligned_cols=68 Identities=15% Similarity=0.223 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 002662 294 YLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEER 365 (895)
Q Consensus 294 lE~QL~ELq~kLee~ekeL~el~~~k~kLEsEleEL~~qLee~e~~~aeL~kelkkLe~qI~ELkrqLEeEr 365 (895)
|+..+++||.+.-..+- +..-+.+|+.-+++|.+.--..--...++.+.++.|...+...++.|.+.+
T Consensus 343 Le~kvkeLQ~k~~kQqv----fvDiinkLk~niEeLIedKY~viLEKnd~~k~lqnLqe~la~tqk~LqEsr 410 (527)
T PF15066_consen 343 LEKKVKELQMKITKQQV----FVDIINKLKENIEELIEDKYRVILEKNDIEKTLQNLQEALANTQKHLQESR 410 (527)
T ss_pred HHHHHHHHHHHhhhhhH----HHHHHHHHHHHHHHHHHhHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444333222 334444444444444433222222233444445555555555554444433
No 223
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=92.53 E-value=29 Score=41.47 Aligned_cols=37 Identities=22% Similarity=0.182 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 468 VEELENEIKKLREELESEKAAREVAWAKVSGLELDIL 504 (895)
Q Consensus 468 i~elE~EireLeeELE~ek~e~eel~d~v~~LE~ELe 504 (895)
-.+.+..++.+++.++.+...+.++.+++.....++.
T Consensus 407 q~e~~~~l~~v~eKVd~LpqqI~~vs~Kc~~~Ksd~d 443 (531)
T PF15450_consen 407 QNEMEKHLKEVQEKVDSLPQQIEEVSDKCDLHKSDSD 443 (531)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhh
Confidence 3444556777777777777888888888877666554
No 224
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=92.51 E-value=30 Score=41.72 Aligned_cols=11 Identities=27% Similarity=0.422 Sum_probs=6.8
Q ss_pred hhhhhhhhhhh
Q 002662 733 TIRTADLLASE 743 (895)
Q Consensus 733 ~~~~~~~~~~~ 743 (895)
.+-.||.|++-
T Consensus 413 IV~~AD~lsa~ 423 (514)
T TIGR03319 413 LVAAADALSAA 423 (514)
T ss_pred HHHHHHHhcCC
Confidence 66677766543
No 225
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=92.51 E-value=22 Score=40.16 Aligned_cols=38 Identities=24% Similarity=0.295 Sum_probs=29.4
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 002662 502 DILAATRDLDFERRRLKAARERIMLRETQLRAFYSTTE 539 (895)
Q Consensus 502 ELeka~r~LE~Ek~rLq~~rErL~~~eqqlkaeiEk~E 539 (895)
++++.+.+++.+...|+..++|+..+.++++.+++...
T Consensus 242 qvek~i~EfdiEre~LRAel~ree~r~K~lKeEmeSLk 279 (561)
T KOG1103|consen 242 QVEKLIEEFDIEREFLRAELEREEKRQKMLKEEMESLK 279 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567778888888888888888888888886665555
No 226
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=92.34 E-value=8.4 Score=36.73 Aligned_cols=69 Identities=25% Similarity=0.295 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 422 SSLQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAARE 490 (895)
Q Consensus 422 ~r~elEdLk~kLE~~ra~l~~lEkk~reLEkqLeEEk~~~~~lqkei~elE~EireLeeELE~ek~e~e 490 (895)
++..+..|...|+.+......|-+....|...+...+.......+.+.+++++|.++...|+.++.++.
T Consensus 14 l~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~eK~ak~ 82 (107)
T PF09304_consen 14 LQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLEDEKQAKL 82 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555544455555555555554444555555555555555555555544443
No 227
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=92.32 E-value=23 Score=39.81 Aligned_cols=48 Identities=21% Similarity=0.168 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 002662 465 KKRVEELENEIKKLREELESEKAAREVAWAKVSGLELDILAATRDLDF 512 (895)
Q Consensus 465 qkei~elE~EireLeeELE~ek~e~eel~d~v~~LE~ELeka~r~LE~ 512 (895)
-.+-.+.+.-+..-.+-...++.+.+....++..|++|.--++..+|.
T Consensus 228 ~aKyeefq~tl~KSNE~F~~fK~E~ekmtKk~kklEKE~l~wr~K~e~ 275 (391)
T KOG1850|consen 228 MAKYEEFQTTLAKSNELFTKFKQEMEKMTKKIKKLEKETLIWRTKWEN 275 (391)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444455555555555556677778888888999999887655555544
No 228
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=92.27 E-value=13 Score=37.06 Aligned_cols=24 Identities=17% Similarity=0.217 Sum_probs=11.6
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHH
Q 002662 504 LAATRDLDFERRRLKAARERIMLR 527 (895)
Q Consensus 504 eka~r~LE~Ek~rLq~~rErL~~~ 527 (895)
...+.+|..+.++-..+.++|+.+
T Consensus 125 ~~~~tq~~~e~rkke~E~~kLk~r 148 (151)
T PF11559_consen 125 QQRKTQYEHELRKKEREIEKLKER 148 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555544444455444
No 229
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=92.25 E-value=33 Score=41.60 Aligned_cols=73 Identities=19% Similarity=0.271 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 002662 445 NKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAREVAWAKVSGLELDILAATRDLDFERRRLKAAR 521 (895)
Q Consensus 445 kk~reLEkqLeEEk~~~~~lqkei~elE~EireLeeELE~ek~e~eel~d~v~~LE~ELeka~r~LE~Ek~rLq~~r 521 (895)
.++...+.++...+...-++...+.++-.-..++..+|..+. .....+..|+.++..+..+|...-..|...|
T Consensus 297 ~~L~~ve~Rl~~L~~l~RKY~~~~~~l~~~~~~~~~el~~L~----~~~~~~~~Le~~~~~l~~~~~~~A~~Ls~~R 369 (557)
T COG0497 297 NRLEEVEERLFALKSLARKYGVTIEDLLEYLDKIKEELAQLD----NSEESLEALEKEVKKLKAELLEAAEALSAIR 369 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhh----hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666555555555555555555555555555443 3444566666666666666666555554433
No 230
>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]
Probab=92.21 E-value=36 Score=41.85 Aligned_cols=21 Identities=29% Similarity=0.585 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 002662 241 LDDFRSLQRSNTELRKQLESQ 261 (895)
Q Consensus 241 ld~Vr~Le~e~~eLr~qLee~ 261 (895)
|.++|+|+++..+-+.||...
T Consensus 796 LreLR~LQkeE~R~qqqL~~k 816 (1187)
T KOG0579|consen 796 LRELRRLQKEEARQQQQLQAK 816 (1187)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445566666665555555443
No 231
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=92.17 E-value=34 Score=41.58 Aligned_cols=104 Identities=19% Similarity=0.271 Sum_probs=47.6
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHH----HhhHHHHHHHHHHH
Q 002662 451 ETQVCKEQNVSASWKKRVEELENEIKKLREELESEKA------AREVAWAKVSGLELDILAA----TRDLDFERRRLKAA 520 (895)
Q Consensus 451 EkqLeEEk~~~~~lqkei~elE~EireLeeELE~ek~------e~eel~d~v~~LE~ELeka----~r~LE~Ek~rLq~~ 520 (895)
..++..++..+ ..++.++..++..|+.-+..... ....++--+..|...|... ...|..+...|+..
T Consensus 366 ~~~v~~Er~~~---~~~l~~~~~~~~~le~~~~~~~~~~~~~~~~~~l~~a~~~l~~~l~~~~~~~~~p~~~el~~l~~~ 442 (582)
T PF09731_consen 366 KEKVEQERNGR---LAKLAELNSRLKALEEALDARSEAEDENRRAQQLWLAVDALKSALDSGNAGSPRPFEDELRALKEL 442 (582)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCHHHHHHHHHHh
Confidence 33444444433 44445555555555543333221 2333444444444444432 25666666655443
Q ss_pred HH---HHHHHHHHH-----HHhhhhHHHHHHHHHHHHHHHHHHhh
Q 002662 521 RE---RIMLRETQL-----RAFYSTTEEISVLFARQQEQLKAMQK 557 (895)
Q Consensus 521 rE---rL~~~eqql-----kaeiEk~EEiee~rk~~~~qLr~LQ~ 557 (895)
-. -+..-+..+ ..=+-+.....++|......++....
T Consensus 443 ~~~d~~v~~~l~~l~~~a~~~Gv~s~~~L~~rf~~v~~~~r~~~l 487 (582)
T PF09731_consen 443 APDDELVDAALSSLPPEAAQRGVPSEAQLRNRFERVAPEVRRASL 487 (582)
T ss_pred CCCChHHHHHHHhcCHHHhhCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 11 111112222 11245666677777777777766543
No 232
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=92.12 E-value=21 Score=38.92 Aligned_cols=108 Identities=18% Similarity=0.086 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 424 LQVESLKLKLDETRERLVTSDNKVRLLE--TQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAREVAWAKVSGLEL 501 (895)
Q Consensus 424 ~elEdLk~kLE~~ra~l~~lEkk~reLE--kqLeEEk~~~~~lqkei~elE~EireLeeELE~ek~e~eel~d~v~~LE~ 501 (895)
..++.+..-+...+..+.-++..+-.-. .-=..|+...+.+-.++.+.+.+....+.+-...-..+..+...+..|++
T Consensus 84 ~~yerA~~~h~aAKe~v~laEq~l~~~~~~~~D~~wqEmLn~A~~kVneAE~ek~~ae~eH~~~~~~~~~ae~~v~~Lek 163 (239)
T PF05276_consen 84 LQYERANSMHAAAKEMVALAEQSLMSDSNWTFDPAWQEMLNHATQKVNEAEQEKTRAEREHQRRARIYNEAEQRVQQLEK 163 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555443322 11123666777778888888888888888888888899999999999999
Q ss_pred HHHHHH---hhHHHHHHHHHHHHHHHHHHHHHH
Q 002662 502 DILAAT---RDLDFERRRLKAARERIMLRETQL 531 (895)
Q Consensus 502 ELeka~---r~LE~Ek~rLq~~rErL~~~eqql 531 (895)
++..++ +.|=..+..+...++....++..+
T Consensus 164 ~lkr~I~KSrPYfe~K~~~~~~l~~~k~~v~~L 196 (239)
T PF05276_consen 164 KLKRAIKKSRPYFELKAKFNQQLEEQKEKVEEL 196 (239)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998655 566555555554444444333333
No 233
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=91.83 E-value=23 Score=38.91 Aligned_cols=34 Identities=9% Similarity=0.220 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 315 ISRISAEQKHEMEDLNDRLSASMQSCTEANEIMK 348 (895)
Q Consensus 315 l~~~k~kLEsEleEL~~qLee~e~~~aeL~kelk 348 (895)
|.+-..++++.+..|..++..+...+..+.+++.
T Consensus 72 Lqe~eek~e~~l~~Lq~ql~~l~akI~k~~~el~ 105 (258)
T PF15397_consen 72 LQEWEEKEESKLSKLQQQLEQLDAKIQKTQEELN 105 (258)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555555555555555555555555554
No 234
>KOG4787 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.76 E-value=36 Score=40.98 Aligned_cols=27 Identities=22% Similarity=0.300 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 426 VESLKLKLDETRERLVTSDNKVRLLET 452 (895)
Q Consensus 426 lEdLk~kLE~~ra~l~~lEkk~reLEk 452 (895)
+-.|+.+|+++..++.-|.-+++.+++
T Consensus 461 ~~sL~~~LeqAsK~CRIL~~RL~K~~R 487 (852)
T KOG4787|consen 461 VISLATKLEQANKQCRILNERLNKLHR 487 (852)
T ss_pred HHHHHHHHHHHhchhHHHHHHHhHHHH
Confidence 345566666655555555555555544
No 235
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=91.70 E-value=35 Score=40.69 Aligned_cols=15 Identities=7% Similarity=0.206 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHH
Q 002662 538 TEEISVLFARQQEQL 552 (895)
Q Consensus 538 ~EEiee~rk~~~~qL 552 (895)
+.+|...-..+|.++
T Consensus 368 a~eIa~~a~~Lydkl 382 (475)
T PRK10361 368 AQQIADRASKLYDKM 382 (475)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444444
No 236
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=91.47 E-value=19 Score=37.06 Aligned_cols=33 Identities=30% Similarity=0.439 Sum_probs=21.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002662 240 SLDDFRSLQRSNTELRKQLESQVLEIDKLRNEN 272 (895)
Q Consensus 240 ~ld~Vr~Le~e~~eLr~qLee~~~~i~~lr~Ei 272 (895)
.+.+|..|.-+|..|...+++.-.++..++..+
T Consensus 40 ~~iDFeqLkien~~l~~kIeERn~eL~~Lk~~~ 72 (177)
T PF13870_consen 40 HLIDFEQLKIENQQLNEKIEERNKELLKLKKKI 72 (177)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777777777766666666655555443
No 237
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=91.28 E-value=46 Score=41.25 Aligned_cols=61 Identities=20% Similarity=0.265 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 002662 304 MLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEE 364 (895)
Q Consensus 304 kLee~ekeL~el~~~k~kLEsEleEL~~qLee~e~~~aeL~kelkkLe~qI~ELkrqLEeE 364 (895)
+++..+..+.++..++.+...-+++.++++.+.+.+....+.++..++.++.+++..|+-.
T Consensus 349 KI~RYQ~Dl~Elt~RLEEQ~~VVeeA~e~~~e~e~r~e~~E~EvD~lksQLADYQQALD~Q 409 (1480)
T COG3096 349 KIERYQADLEELTIRLEEQNEVVEEANERQEENEARAEAAELEVDELKSQLADYQQALDVQ 409 (1480)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 3333344444455555555555555666666666666666666666667777776666543
No 238
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=90.94 E-value=45 Score=40.53 Aligned_cols=40 Identities=25% Similarity=0.277 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 404 RELEQQEVINKLQIAEKQSSLQVESLKLKLDETRERLVTS 443 (895)
Q Consensus 404 ~~eElee~l~KLeE~EKk~r~elEdLk~kLE~~ra~l~~l 443 (895)
.+++.++.+..|....||....++++-.-+++.++.+..+
T Consensus 298 ~L~~ve~Rl~~L~~l~RKY~~~~~~l~~~~~~~~~el~~L 337 (557)
T COG0497 298 RLEEVEERLFALKSLARKYGVTIEDLLEYLDKIKEELAQL 337 (557)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHh
Confidence 4445555555555556666666666666655555554444
No 239
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=90.86 E-value=38 Score=39.52 Aligned_cols=20 Identities=30% Similarity=0.559 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 002662 294 YLHQLKVLRDMLDAKQKELA 313 (895)
Q Consensus 294 lE~QL~ELq~kLee~ekeL~ 313 (895)
+..|+.+++.+|...+..+.
T Consensus 176 l~~ql~~~~~~l~~ae~~l~ 195 (444)
T TIGR03017 176 FVQQIAALREDLARAQSKLS 195 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555444
No 240
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=90.85 E-value=9.7 Score=44.39 Aligned_cols=9 Identities=22% Similarity=0.368 Sum_probs=5.8
Q ss_pred cceEEEEec
Q 002662 126 NHCKIYRKK 134 (895)
Q Consensus 126 ~Hc~I~~~~ 134 (895)
.|.+|.|++
T Consensus 103 ~~irivRd~ 111 (493)
T KOG0804|consen 103 SDIRIVRDG 111 (493)
T ss_pred heeEEeecC
Confidence 467777754
No 241
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=90.81 E-value=3.4 Score=35.59 Aligned_cols=58 Identities=17% Similarity=0.241 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 301 LRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELK 358 (895)
Q Consensus 301 Lq~kLee~ekeL~el~~~k~kLEsEleEL~~qLee~e~~~aeL~kelkkLe~qI~ELk 358 (895)
|+.-|+..-+....+...+.+.....-.+..+|.+++.++.+|..++..|+.+|.+++
T Consensus 2 lQsaL~~EirakQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 2 LQSALEAEIRAKQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4555555556666677777788888888888888888888888888888887777765
No 242
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=90.75 E-value=12 Score=47.25 Aligned_cols=69 Identities=22% Similarity=0.292 Sum_probs=52.5
Q ss_pred CCceEecCCCCCCceecCCCcccccceEEEEeccCCCCCCCCCCCCceEEEEeCCCCceeecCccccCCCCccccCCCCE
Q 002662 102 ADEHCIGRLVDDAHFQIDSNAVSANHCKIYRKKFASGDLDHSPSGCSSVCLKDTSTNGTYVNCERFKKNSSEVNIDHGDI 181 (895)
Q Consensus 102 ~~~~~IGR~~~~~di~i~~~~IS~~Hc~I~~~~~~~~~~~~~~~~~~~~~L~D~StNGTfVNg~rI~kng~~~~L~~GDv 181 (895)
.+..+||=..+- +|++....|=.+||.|..... + .+|+.-...--+||||..+.. ...|.|||.
T Consensus 466 ~~~tlig~~~~~-~i~l~glgi~p~h~vidI~~d----------g--~l~~~p~~~~R~~VNGs~v~~---~t~L~~GdR 529 (1714)
T KOG0241|consen 466 KDHTLIGLFKSQ-DIQLSGLGIQPKHCVIDIESD----------G--ELRLTPLLNARSCVNGSLVCS---TTQLWHGDR 529 (1714)
T ss_pred cCceeeccccCc-ceeeecCcccCccceeeeccC----------C--cEEecccccceeeecCceecc---ccccccCce
Confidence 355688866555 899999999999999976542 1 255554444499999999876 578999999
Q ss_pred EEEcc
Q 002662 182 ISFAA 186 (895)
Q Consensus 182 IsLg~ 186 (895)
|-.|+
T Consensus 530 iLwGn 534 (1714)
T KOG0241|consen 530 ILWGN 534 (1714)
T ss_pred EEecc
Confidence 98885
No 243
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=90.60 E-value=37 Score=39.03 Aligned_cols=20 Identities=20% Similarity=0.230 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 002662 293 SYLHQLKVLRDMLDAKQKEL 312 (895)
Q Consensus 293 klE~QL~ELq~kLee~ekeL 312 (895)
-++..+++|.++++..+-+.
T Consensus 295 ~L~k~vQ~L~AQle~~R~q~ 314 (593)
T KOG4807|consen 295 ALEKEVQALRAQLEAWRLQG 314 (593)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 34444555555554444443
No 244
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=90.46 E-value=15 Score=44.45 Aligned_cols=18 Identities=22% Similarity=0.287 Sum_probs=8.6
Q ss_pred ceeEEecCCc--eEecCCCC
Q 002662 95 GINILLTADE--HCIGRLVD 112 (895)
Q Consensus 95 g~~i~L~~~~--~~IGR~~~ 112 (895)
|..+.+..++ .+++|..+
T Consensus 128 G~ev~~fEdeT~I~VsR~RS 147 (652)
T COG2433 128 GTEVSVFEDETKITVSRGRS 147 (652)
T ss_pred CceeEeeeeeeEEEEEeccc
Confidence 3444444443 45666543
No 245
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=90.16 E-value=26 Score=36.48 Aligned_cols=35 Identities=14% Similarity=0.192 Sum_probs=28.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 002662 240 SLDDFRSLQRSNTELRKQLESQVLEIDKLRNENRV 274 (895)
Q Consensus 240 ~ld~Vr~Le~e~~eLr~qLee~~~~i~~lr~Ei~~ 274 (895)
++..++.|+.++..|+.+.......+..+..+...
T Consensus 2 visALK~LQeKIrrLELER~qAe~nl~~LS~et~~ 36 (178)
T PF14073_consen 2 VISALKNLQEKIRRLELERSQAEDNLKQLSRETSH 36 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 46778999999999998888888888888777633
No 246
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=89.98 E-value=29 Score=36.76 Aligned_cols=32 Identities=22% Similarity=0.361 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 465 KKRVEELENEIKKLREELESEKAAREVAWAKV 496 (895)
Q Consensus 465 qkei~elE~EireLeeELE~ek~e~eel~d~v 496 (895)
++++..+.++...|...+..+..+++++..+.
T Consensus 99 ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf 130 (201)
T PF13851_consen 99 EKELKDLKWEHEVLEQRFEKLEQERDELYRKF 130 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444333
No 247
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=89.97 E-value=19 Score=42.04 Aligned_cols=23 Identities=13% Similarity=0.174 Sum_probs=11.7
Q ss_pred CCCCCCccchhhhhcccCCCCCC
Q 002662 50 KKTVVPSHFVFWVAGTYAAQPLQ 72 (895)
Q Consensus 50 ~~~~~~~~~~~~va~~~~~qp~~ 72 (895)
.|+.--+.+|+.+....+..-..
T Consensus 47 np~ve~t~GiiHLyk~n~~~s~~ 69 (493)
T KOG0804|consen 47 NPSVEETHGIIHLYKKNSHSSLK 69 (493)
T ss_pred CCceeeeceeEEEEecCcccccc
Confidence 33444456666666554444443
No 248
>PF13166 AAA_13: AAA domain
Probab=89.90 E-value=60 Score=40.32 Aligned_cols=8 Identities=25% Similarity=0.077 Sum_probs=4.4
Q ss_pred eEecCCCC
Q 002662 105 HCIGRLVD 112 (895)
Q Consensus 105 ~~IGR~~~ 112 (895)
++.|++.+
T Consensus 20 ~IYG~NGs 27 (712)
T PF13166_consen 20 LIYGRNGS 27 (712)
T ss_pred EEECCCCC
Confidence 45566554
No 249
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=89.88 E-value=15 Score=40.35 Aligned_cols=112 Identities=11% Similarity=0.229 Sum_probs=62.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 240 SLDDFRSLQRSNTELRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKESVSISYLHQLKVLRDMLDAKQKELAEISRIS 319 (895)
Q Consensus 240 ~ld~Vr~Le~e~~eLr~qLee~~~~i~~lr~Ei~~i~er~e~El~El~e~lrkklE~QL~ELq~kLee~ekeL~el~~~k 319 (895)
.|-+|..|+..+.+|+++..-..-.++.|..-+...+.+.+.+..+... |+...--+-..+..+...+
T Consensus 16 aLqKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~------------LkREnq~l~e~c~~lek~r 83 (307)
T PF10481_consen 16 ALQKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSA------------LKRENQSLMESCENLEKTR 83 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhh------------hhhhhhhHHHHHHHHHHHH
Confidence 4788999999999988776666666666655554444443333332221 1111222222333345555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 002662 320 AEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDE 363 (895)
Q Consensus 320 ~kLEsEleEL~~qLee~e~~~aeL~kelkkLe~qI~ELkrqLEe 363 (895)
.++..++.--..++.-++.++..+.+.+.+|+++|.-++.+|+.
T Consensus 84 qKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELEr 127 (307)
T PF10481_consen 84 QKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELER 127 (307)
T ss_pred HHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555556666666666666666666666666655544
No 250
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=89.66 E-value=46 Score=38.64 Aligned_cols=43 Identities=14% Similarity=0.228 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 448 RLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAARE 490 (895)
Q Consensus 448 reLEkqLeEEk~~~~~lqkei~elE~EireLeeELE~ek~e~e 490 (895)
..|.+.+.+.+....+++-.+.....+|..++..+..+..++.
T Consensus 247 ~al~~Ri~et~~ak~~Le~ql~~~~~ei~~~e~~i~~L~~ai~ 289 (384)
T PF03148_consen 247 AALRKRIHETQEAKNELEWQLKKTLQEIAEMEKNIEDLEKAIR 289 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3555555555544444444444444444444444444444333
No 251
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=89.56 E-value=36 Score=37.22 Aligned_cols=45 Identities=9% Similarity=0.062 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 303 DMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIM 347 (895)
Q Consensus 303 ~kLee~ekeL~el~~~k~kLEsEleEL~~qLee~e~~~aeL~kel 347 (895)
.++.+..+.-.-+..++..-+.++.++..++..++.+..=...++
T Consensus 122 qQ~~~a~RrE~ilv~rlA~kEQEmqe~~sqi~~lK~qq~Ps~~ql 166 (330)
T KOG2991|consen 122 QQQQEAARRENILVMRLATKEQEMQECTSQIQYLKQQQQPSVAQL 166 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHH
Confidence 334444444444566666666666666666666666554333333
No 252
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=89.55 E-value=31 Score=36.52 Aligned_cols=6 Identities=33% Similarity=0.506 Sum_probs=2.4
Q ss_pred HHHHHH
Q 002662 499 LELDIL 504 (895)
Q Consensus 499 LE~ELe 504 (895)
++.+|.
T Consensus 194 ~e~~l~ 199 (221)
T PF04012_consen 194 LEAELE 199 (221)
T ss_pred HHHHHH
Confidence 334443
No 253
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=89.54 E-value=48 Score=38.70 Aligned_cols=16 Identities=19% Similarity=0.217 Sum_probs=8.3
Q ss_pred CCCCCCCCCCCCCCcc
Q 002662 42 QNPNATSPKKTVVPSH 57 (895)
Q Consensus 42 ~~~~~~~~~~~~~~~~ 57 (895)
|.|...+|.++.+..+
T Consensus 38 T~s~pssp~gss~dsp 53 (502)
T KOG0982|consen 38 TRSRPSSPGGSSSDSP 53 (502)
T ss_pred ccCCCCCCCCCCCCCc
Confidence 5555556665444333
No 254
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=89.44 E-value=26 Score=40.39 Aligned_cols=12 Identities=25% Similarity=0.274 Sum_probs=6.6
Q ss_pred CcccccceEEEE
Q 002662 121 NAVSANHCKIYR 132 (895)
Q Consensus 121 ~~IS~~Hc~I~~ 132 (895)
..+.+.+|.+.+
T Consensus 112 ~AL~~~~F~~~~ 123 (359)
T PF10498_consen 112 EALKRKNFKWKR 123 (359)
T ss_pred HHHHhcCcCccC
Confidence 455666665544
No 255
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=89.31 E-value=68 Score=40.12 Aligned_cols=16 Identities=19% Similarity=0.142 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHhhH
Q 002662 495 KVSGLELDILAATRDL 510 (895)
Q Consensus 495 ~v~~LE~ELeka~r~L 510 (895)
..+.|+.-|.+.-.+|
T Consensus 544 LtR~LQ~Sma~lL~dl 559 (861)
T PF15254_consen 544 LTRTLQNSMAKLLSDL 559 (861)
T ss_pred HHHHHHHHHHHHhhhc
Confidence 4444555444444433
No 256
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=89.09 E-value=38 Score=36.93 Aligned_cols=15 Identities=40% Similarity=0.432 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHH
Q 002662 514 RRRLKAARERIMLRE 528 (895)
Q Consensus 514 k~rLq~~rErL~~~e 528 (895)
.++|..+++|....+
T Consensus 139 eqrLnqAIErnAfLE 153 (333)
T KOG1853|consen 139 EQRLNQAIERNAFLE 153 (333)
T ss_pred HHHHHHHHHHHHHHH
Confidence 355655555554333
No 257
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=88.96 E-value=83 Score=40.66 Aligned_cols=39 Identities=23% Similarity=0.387 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhh--------HHHHHHHHHHHHHHHHHH
Q 002662 252 TELRKQLESQVLEIDKLRNEN--------RVVVERHEKEMKEMKESV 290 (895)
Q Consensus 252 ~eLr~qLee~~~~i~~lr~Ei--------~~i~er~e~El~El~e~l 290 (895)
.+|+.|+......++.|++.+ +..+.+|+..+.++-.++
T Consensus 1066 ~eLReQIq~~KQ~LesLQRAV~TPVvtd~eKvr~rYe~LI~~iTKrI 1112 (1439)
T PF12252_consen 1066 SELREQIQSVKQDLESLQRAVVTPVVTDAEKVRVRYETLITDITKRI 1112 (1439)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHH
Confidence 345555555544555555444 666777777777776666
No 258
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=88.94 E-value=33 Score=37.25 Aligned_cols=41 Identities=15% Similarity=0.244 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 298 LKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQ 338 (895)
Q Consensus 298 L~ELq~kLee~ekeL~el~~~k~kLEsEleEL~~qLee~e~ 338 (895)
++.+..+++-++.....+...+..++.++.+|+.+++..+.
T Consensus 58 ~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~ 98 (251)
T PF11932_consen 58 YRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEE 98 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333444444444444444444333333
No 259
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=88.80 E-value=86 Score=40.65 Aligned_cols=106 Identities=20% Similarity=0.254 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHH---HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 258 LESQVLEIDKLRNENRVVVERHE---KEMKE-MKESVSISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRL 333 (895)
Q Consensus 258 Lee~~~~i~~lr~Ei~~i~er~e---~El~E-l~e~lrkklE~QL~ELq~kLee~ekeL~el~~~k~kLEsEleEL~~qL 333 (895)
+..+..++++|++++.+.+++-- .+-.= ..+...+....+++++..+++.+++++.++.+...-+......|..++
T Consensus 406 lKd~~~EIerLK~dl~AaReKnGvyisee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~ 485 (1041)
T KOG0243|consen 406 LKDLYEEIERLKRDLAAAREKNGVYISEERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEK 485 (1041)
T ss_pred HHHHHHHHHHHHHHHHHhHhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 44556666777777765554310 00000 000011334455566666666666666665555554444445555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 002662 334 SASMQSCTEANEIMKSQKVTIDELKTQLDE 363 (895)
Q Consensus 334 ee~e~~~aeL~kelkkLe~qI~ELkrqLEe 363 (895)
..++..+..-..++..++..+.+++..|..
T Consensus 486 ~~~k~~L~~~~~el~~~~ee~~~~~~~l~~ 515 (1041)
T KOG0243|consen 486 EKLKSKLQNKNKELESLKEELQQAKATLKE 515 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555555555433
No 260
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=88.67 E-value=55 Score=38.25 Aligned_cols=54 Identities=11% Similarity=0.083 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 292 ISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANE 345 (895)
Q Consensus 292 kklE~QL~ELq~kLee~ekeL~el~~~k~kLEsEleEL~~qLee~e~~~aeL~k 345 (895)
+++..++.++..+++.....-..-...+++++..+++|+..+.....+...+..
T Consensus 148 ~q~da~~qq~~~ele~~d~~~~~d~ee~kqlEe~ieeL~qsl~kd~~~~~~l~~ 201 (446)
T KOG4438|consen 148 KQLDAKYQQALKELERFDEDVEEDEEEVKQLEENIEELNQSLLKDFNQQMSLLA 201 (446)
T ss_pred HHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555554444444555555555555555555544444444333
No 261
>PRK10884 SH3 domain-containing protein; Provisional
Probab=88.60 E-value=7.1 Score=41.52 Aligned_cols=20 Identities=25% Similarity=0.426 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 002662 468 VEELENEIKKLREELESEKA 487 (895)
Q Consensus 468 i~elE~EireLeeELE~ek~ 487 (895)
+.+++.+..+|++++...+.
T Consensus 134 ~~~L~~~n~~L~~~l~~~~~ 153 (206)
T PRK10884 134 INGLKEENQKLKNQLIVAQK 153 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333444444443333333
No 262
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=88.55 E-value=39 Score=36.41 Aligned_cols=17 Identities=24% Similarity=0.091 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 002662 403 RRELEQQEVINKLQIAE 419 (895)
Q Consensus 403 ~~~eElee~l~KLeE~E 419 (895)
..+..++.++..|+...
T Consensus 192 ~~~~~l~~~l~~Lq~~l 208 (240)
T PF12795_consen 192 ARIQRLQQQLQALQNLL 208 (240)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444555554444
No 263
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=88.54 E-value=59 Score=38.42 Aligned_cols=9 Identities=11% Similarity=0.139 Sum_probs=5.2
Q ss_pred hhhcccccc
Q 002662 563 ENYENTSVD 571 (895)
Q Consensus 563 ek~~s~~le 571 (895)
.-|+++.+.
T Consensus 320 ~AP~dG~V~ 328 (457)
T TIGR01000 320 KAPEDGVLH 328 (457)
T ss_pred ECCCCeEEE
Confidence 346666665
No 264
>PRK00106 hypothetical protein; Provisional
Probab=88.43 E-value=68 Score=38.99 Aligned_cols=10 Identities=40% Similarity=0.524 Sum_probs=5.0
Q ss_pred hhhhhhhhhh
Q 002662 733 TIRTADLLAS 742 (895)
Q Consensus 733 ~~~~~~~~~~ 742 (895)
.+-.||-|++
T Consensus 434 IV~~AD~lsa 443 (535)
T PRK00106 434 IVAAADALSS 443 (535)
T ss_pred HHHHHHHhcc
Confidence 4555555543
No 265
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=88.13 E-value=30 Score=34.55 Aligned_cols=37 Identities=14% Similarity=0.210 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 412 INKLQIAEKQSSLQVESLKLKLDETRERLVTSDNKVR 448 (895)
Q Consensus 412 l~KLeE~EKk~r~elEdLk~kLE~~ra~l~~lEkk~r 448 (895)
...+....+++..+++.+...++.+...+..+++++.
T Consensus 54 ~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~ 90 (151)
T PF11559_consen 54 REDLSDKLRRLRSDIERLQNDVERLKEQLEELERELA 90 (151)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444444333
No 266
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=87.94 E-value=24 Score=38.22 Aligned_cols=45 Identities=9% Similarity=0.093 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 314 EISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELK 358 (895)
Q Consensus 314 el~~~k~kLEsEleEL~~qLee~e~~~aeL~kelkkLe~qI~ELk 358 (895)
...+.+.....+++.|+.-+..++.........+.++..++.-|+
T Consensus 50 ~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk 94 (230)
T PF10146_consen 50 AHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLK 94 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444444444333333333
No 267
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=87.64 E-value=43 Score=35.76 Aligned_cols=17 Identities=18% Similarity=0.030 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 002662 292 ISYLHQLKVLRDMLDAK 308 (895)
Q Consensus 292 kklE~QL~ELq~kLee~ 308 (895)
.-+...+.++-.++++-
T Consensus 9 ~iv~a~~n~~~dk~EDP 25 (219)
T TIGR02977 9 DIVNSNLNALLDKAEDP 25 (219)
T ss_pred HHHHHHHHHHHHhccCH
Confidence 33444444444444443
No 268
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=87.54 E-value=86 Score=39.18 Aligned_cols=17 Identities=24% Similarity=0.323 Sum_probs=11.2
Q ss_pred CCCCCCCCCCCCcCCCC
Q 002662 642 GFGSDIDGVGTGPILEG 658 (895)
Q Consensus 642 ~~~~~~~~~~~~~~~~~ 658 (895)
.|.-+.-|-|-+-.++|
T Consensus 396 IFAYGQTGSGKTyTM~G 412 (670)
T KOG0239|consen 396 IFAYGQTGSGKTYTMSG 412 (670)
T ss_pred EEEecccCCCccccccC
Confidence 46666677776666666
No 269
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=87.46 E-value=56 Score=36.97 Aligned_cols=31 Identities=19% Similarity=0.128 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002662 242 DDFRSLQRSNTELRKQLESQVLEIDKLRNEN 272 (895)
Q Consensus 242 d~Vr~Le~e~~eLr~qLee~~~~i~~lr~Ei 272 (895)
.-+.-++-.-.+|...+.+-......++.++
T Consensus 63 P~LElY~~sC~EL~~~I~egr~~~~~~E~et 93 (312)
T smart00787 63 PLLELYQFSCKELKKYISEGRDLFKEIEEET 93 (312)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566667777777777766666666665
No 270
>PLN02939 transferase, transferring glycosyl groups
Probab=87.31 E-value=1e+02 Score=39.91 Aligned_cols=15 Identities=27% Similarity=0.282 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHH
Q 002662 442 TSDNKVRLLETQVCK 456 (895)
Q Consensus 442 ~lEkk~reLEkqLeE 456 (895)
++.+++..|+..|++
T Consensus 328 ~~~~~~~~~~~~~~~ 342 (977)
T PLN02939 328 DLRDKVDKLEASLKE 342 (977)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444443
No 271
>PF00901 Orbi_VP5: Orbivirus outer capsid protein VP5; InterPro: IPR000145 The orbivirus VP5 protein is one of the two proteins (with VP2) which make up the virus particle outer capsid. Cryoelectron microscopy indicates that VP5 is a trimer suggesting that there are 360 copies of VP5 per virion [].; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=87.17 E-value=64 Score=38.45 Aligned_cols=35 Identities=31% Similarity=0.391 Sum_probs=19.1
Q ss_pred eeccccccc----------ccccccCCCCCCCHHHHHHHHHHHHHHH
Q 002662 219 EYVSDNKRL----------KGIGICSPDGPLSLDDFRSLQRSNTELR 255 (895)
Q Consensus 219 am~G~s~~~----------~G~~~sa~~~~~~ld~Vr~Le~e~~eLr 255 (895)
+|||++|.- -|.+-+ +.+|.+..+ +.|..++.+|+
T Consensus 53 ~iTGesyGesvKqAVilNVlG~~d~-~pDPLsPgE-~~l~~Kl~eLE 97 (508)
T PF00901_consen 53 AITGESYGESVKQAVILNVLGTGDE-PPDPLSPGE-QGLQRKLKELE 97 (508)
T ss_pred HhcccchHHHHHHHHHHHhccCCCC-CCCCCCHhH-HHHHHHHHHHH
Confidence 567877765 233223 334555444 45666666665
No 272
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=87.07 E-value=60 Score=36.84 Aligned_cols=24 Identities=13% Similarity=0.075 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 335 ASMQSCTEANEIMKSQKVTIDELK 358 (895)
Q Consensus 335 e~e~~~aeL~kelkkLe~qI~ELk 358 (895)
.++..+..+..+...++.++.++.
T Consensus 131 ~LE~li~~~~EEn~~lqlqL~~l~ 154 (401)
T PF06785_consen 131 HLEGLIRHLREENQCLQLQLDALQ 154 (401)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHH
Confidence 333333344444444444444443
No 273
>PRK10884 SH3 domain-containing protein; Provisional
Probab=86.92 E-value=11 Score=40.23 Aligned_cols=23 Identities=13% Similarity=0.088 Sum_probs=14.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHH
Q 002662 240 SLDDFRSLQRSNTELRKQLESQV 262 (895)
Q Consensus 240 ~ld~Vr~Le~e~~eLr~qLee~~ 262 (895)
...++..|++++.+|+.+|.+..
T Consensus 91 ~~~rlp~le~el~~l~~~l~~~~ 113 (206)
T PRK10884 91 LRTRVPDLENQVKTLTDKLNNID 113 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777777777775555443
No 274
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=86.90 E-value=63 Score=36.89 Aligned_cols=31 Identities=23% Similarity=0.466 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002662 241 LDDFRSLQRSNTELRKQLESQVLEIDKLRNE 271 (895)
Q Consensus 241 ld~Vr~Le~e~~eLr~qLee~~~~i~~lr~E 271 (895)
|+++..-...+..|+.+|......+..-..+
T Consensus 7 L~KL~et~~~V~~m~~~L~~~~~~L~~k~~e 37 (344)
T PF12777_consen 7 LDKLKETEEQVEEMQEELEEKQPELEEKQKE 37 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666666665555555554444333
No 275
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=86.83 E-value=63 Score=36.86 Aligned_cols=55 Identities=18% Similarity=0.178 Sum_probs=29.7
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 450 LETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAREVAWAKVSGLELDIL 504 (895)
Q Consensus 450 LEkqLeEEk~~~~~lqkei~elE~EireLeeELE~ek~e~eel~d~v~~LE~ELe 504 (895)
+...+++........+..+.+.+.++.+++..|..+...|+++......|+.+++
T Consensus 219 ~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~ 273 (344)
T PF12777_consen 219 KRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIE 273 (344)
T ss_dssp HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444555555555555666666666665555555555555555444
No 276
>KOG2685 consensus Cystoskeletal protein Tektin [Cytoskeleton]
Probab=86.52 E-value=72 Score=37.24 Aligned_cols=49 Identities=12% Similarity=0.091 Sum_probs=22.1
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 262 VLEIDKLRNENRVVVERHEKEMKEMKESVSISYLHQLKVLRDMLDAKQKE 311 (895)
Q Consensus 262 ~~~i~~lr~Ei~~i~er~e~El~El~e~lrkklE~QL~ELq~kLee~eke 311 (895)
...+..++.++..-.+....|...+.... .+++..+..+..-+.-...-
T Consensus 79 ~~di~~Wk~el~~ele~l~~E~~~L~~~k-~rle~~L~~~~~P~~ia~eC 127 (421)
T KOG2685|consen 79 LDDVNFWKGELDRELEDLAAEIDDLLHEK-RRLERALNALALPLSIAEEC 127 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCcHHHHHHH
Confidence 44444555554444444444444443333 33555555555444444333
No 277
>PLN03188 kinesin-12 family protein; Provisional
Probab=86.00 E-value=1.3e+02 Score=39.80 Aligned_cols=20 Identities=10% Similarity=0.365 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHhhhh
Q 002662 540 EISVLFARQQEQLKAMQKTL 559 (895)
Q Consensus 540 Eiee~rk~~~~qLr~LQ~~L 559 (895)
+|+.+.++|..++..|...|
T Consensus 1233 ~~~klkrkh~~e~~t~~q~~ 1252 (1320)
T PLN03188 1233 QIDKLKRKHENEISTLNQLV 1252 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45555667777777777666
No 278
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=85.62 E-value=57 Score=35.24 Aligned_cols=31 Identities=19% Similarity=0.151 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 475 IKKLREELESEKAAREVAWAKVSGLELDILA 505 (895)
Q Consensus 475 ireLeeELE~ek~e~eel~d~v~~LE~ELek 505 (895)
+..|+..+..+...+..+...+..|...+.+
T Consensus 94 ~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~ 124 (225)
T COG1842 94 KQSLEDLAKALEAELQQAEEQVEKLKKQLAA 124 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444433
No 279
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=85.60 E-value=64 Score=35.78 Aligned_cols=86 Identities=22% Similarity=0.272 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Q 002662 419 EKQSSLQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELEN-------EIKKLREELESEKAAREV 491 (895)
Q Consensus 419 EKk~r~elEdLk~kLE~~ra~l~~lEkk~reLEkqLeEEk~~~~~lqkei~elE~-------EireLeeELE~ek~e~ee 491 (895)
++.++.-+..+..++..++..+.++......|+.+++..+.-....++++..++. ++..|+.||..+-..|-.
T Consensus 164 E~~l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~lY~~Y~~ 243 (267)
T PF10234_consen 164 EKALKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKLYEIYVE 243 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555566666666666666666666665554444444444444432 345555555555444444
Q ss_pred HHHHHHHHHHHHH
Q 002662 492 AWAKVSGLELDIL 504 (895)
Q Consensus 492 l~d~v~~LE~ELe 504 (895)
--..+.-|+.+|+
T Consensus 244 kfRNl~yLe~qle 256 (267)
T PF10234_consen 244 KFRNLDYLEHQLE 256 (267)
T ss_pred HHHhHHHHHHHHH
Confidence 4444444555444
No 280
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=85.52 E-value=89 Score=37.38 Aligned_cols=43 Identities=26% Similarity=0.291 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 002662 437 RERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLR 479 (895)
Q Consensus 437 ra~l~~lEkk~reLEkqLeEEk~~~~~lqkei~elE~EireLe 479 (895)
-+.+..+-..++++...+.+++.+.+.......+.+.+++.|+
T Consensus 260 ~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~~EaeeELk~lr 302 (596)
T KOG4360|consen 260 DEHLQAYKDAQRQLTAELEELEDKYAECMQMLHEAEEELKCLR 302 (596)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3344444455566666666665555555555555555555554
No 281
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=85.46 E-value=50 Score=34.43 Aligned_cols=36 Identities=17% Similarity=0.238 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 002662 426 VESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVS 461 (895)
Q Consensus 426 lEdLk~kLE~~ra~l~~lEkk~reLEkqLeEEk~~~ 461 (895)
|+.|..+.-++.+.-...+.+++.|+.+|.++.-..
T Consensus 122 Le~LE~E~~rLt~~Q~~ae~Ki~~LE~KL~eEehqR 157 (178)
T PF14073_consen 122 LEKLEKEYLRLTATQSLAETKIKELEEKLQEEEHQR 157 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555566666677888899998888874433
No 282
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=85.28 E-value=56 Score=34.78 Aligned_cols=8 Identities=38% Similarity=0.688 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q 002662 254 LRKQLESQ 261 (895)
Q Consensus 254 Lr~qLee~ 261 (895)
|+-||.+.
T Consensus 15 LKqQLke~ 22 (202)
T PF06818_consen 15 LKQQLKES 22 (202)
T ss_pred HHHHHHHH
Confidence 33333333
No 283
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=84.88 E-value=1.4e+02 Score=39.21 Aligned_cols=20 Identities=5% Similarity=-0.079 Sum_probs=7.2
Q ss_pred HhhhhHHHHHHHHHHHHHHH
Q 002662 533 AFYSTTEEISVLFARQQEQL 552 (895)
Q Consensus 533 aeiEk~EEiee~rk~~~~qL 552 (895)
..+...+++-.....+..++
T Consensus 850 ~~l~~~~~~~~~~~~~~~~~ 869 (1047)
T PRK10246 850 QQLKQDADNRQQQQALMQQI 869 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 284
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=84.67 E-value=45 Score=38.91 Aligned_cols=36 Identities=19% Similarity=0.242 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 421 QSSLQVESLKLKLDETRERLVTSDNKVRLLETQVCK 456 (895)
Q Consensus 421 k~r~elEdLk~kLE~~ra~l~~lEkk~reLEkqLeE 456 (895)
+....+++++..|+++|.......-++..|++++.+
T Consensus 256 ~aEqsl~dlQk~Lekar~e~rnvavek~~lerkl~e 291 (575)
T KOG4403|consen 256 RAEQSLEDLQKRLEKAREEQRNVAVEKLDLERKLDE 291 (575)
T ss_pred HHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHhh
Confidence 445667888888888887777666666777777664
No 285
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=84.56 E-value=61 Score=34.61 Aligned_cols=9 Identities=11% Similarity=-0.064 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 002662 304 MLDAKQKEL 312 (895)
Q Consensus 304 kLee~ekeL 312 (895)
.|...+..+
T Consensus 39 ~l~~ar~~l 47 (219)
T TIGR02977 39 TLVEVRTTS 47 (219)
T ss_pred HHHHHHHHH
Confidence 333333333
No 286
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=84.13 E-value=67 Score=34.75 Aligned_cols=12 Identities=17% Similarity=0.254 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHH
Q 002662 298 LKVLRDMLDAKQ 309 (895)
Q Consensus 298 L~ELq~kLee~e 309 (895)
+.++-.++++-+
T Consensus 15 ~~~~~dk~EDp~ 26 (225)
T COG1842 15 INELLDKAEDPE 26 (225)
T ss_pred HHHHHHhhcCHH
Confidence 333333333333
No 287
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=84.01 E-value=60 Score=34.16 Aligned_cols=99 Identities=14% Similarity=0.160 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 417 IAEKQSSLQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAREVAWAKV 496 (895)
Q Consensus 417 E~EKk~r~elEdLk~kLE~~ra~l~~lEkk~reLEkqLeEEk~~~~~lqkei~elE~EireLeeELE~ek~e~eel~d~v 496 (895)
...++...-+......|...+.++.....-.+.....+...+..+..++..+...+.-....+.+|..-..-++.+..++
T Consensus 74 ~ev~EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~~q~~~L~~~l~~a~~nl~~a~~~a~~AQ~el~eK~qLLeaAk~Rv 153 (188)
T PF05335_consen 74 QEVREAEAVVQEEKASLQQAQANAQAAQRAAQQAQQQLETLKAALKAAQANLANAEQVAEGAQQELAEKTQLLEAAKRRV 153 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444444444444444444444444444444444444444444444444555555555555555555555
Q ss_pred HHHHHHHHHHHhhHHHHHH
Q 002662 497 SGLELDILAATRDLDFERR 515 (895)
Q Consensus 497 ~~LE~ELeka~r~LE~Ek~ 515 (895)
..|.+.|..++.+|+.-+.
T Consensus 154 e~L~~QL~~Ar~D~~~tk~ 172 (188)
T PF05335_consen 154 EELQRQLQAARADYEKTKK 172 (188)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555443
No 288
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.97 E-value=98 Score=36.54 Aligned_cols=9 Identities=33% Similarity=0.597 Sum_probs=5.6
Q ss_pred ccEEEEEcc
Q 002662 192 LAFAFVFRD 200 (895)
Q Consensus 192 ~af~FVF~d 200 (895)
..|.|+|.+
T Consensus 204 ~df~f~~t~ 212 (521)
T KOG1937|consen 204 KDFNFKLTD 212 (521)
T ss_pred ccccceecC
Confidence 456676654
No 289
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=83.94 E-value=21 Score=32.39 Aligned_cols=49 Identities=18% Similarity=0.157 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 002662 474 EIKKLREELESEKAAREVAWAKVSGLELDILAATRDLDFERRRLKAARE 522 (895)
Q Consensus 474 EireLeeELE~ek~e~eel~d~v~~LE~ELeka~r~LE~Ek~rLq~~rE 522 (895)
.-.+++..+...-.+.+.+...|-.|+..+.+.+..||.|..+|+.+++
T Consensus 26 ~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~YEeEI~rLr~eLe 74 (79)
T PF08581_consen 26 QKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQQYEEEIARLRRELE 74 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555566666667888888888889999998888876554
No 290
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=83.49 E-value=45 Score=36.99 Aligned_cols=21 Identities=29% Similarity=0.548 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 002662 467 RVEELENEIKKLREELESEKA 487 (895)
Q Consensus 467 ei~elE~EireLeeELE~ek~ 487 (895)
.++++.++|++|+.-++.++.
T Consensus 118 ALKEARkEIkQLkQvieTmrs 138 (305)
T PF15290_consen 118 ALKEARKEIKQLKQVIETMRS 138 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444444444443
No 291
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=83.42 E-value=1.3e+02 Score=37.49 Aligned_cols=24 Identities=8% Similarity=0.081 Sum_probs=14.0
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHH
Q 002662 531 LRAFYSTTEEISVLFARQQEQLKA 554 (895)
Q Consensus 531 lkaeiEk~EEiee~rk~~~~qLr~ 554 (895)
+...+.++++....|+.+...+..
T Consensus 359 ~d~~i~k~keea~srk~il~~ve~ 382 (660)
T KOG4302|consen 359 IDNLIKKYKEEALSRKEILERVEK 382 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666666666543
No 292
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=83.38 E-value=27 Score=37.46 Aligned_cols=56 Identities=13% Similarity=0.146 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 298 LKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVT 353 (895)
Q Consensus 298 L~ELq~kLee~ekeL~el~~~k~kLEsEleEL~~qLee~e~~~aeL~kelkkLe~q 353 (895)
+.+++..+++.+..+.++.+.+..|-.++.+|+..+++....+..+..++++|+..
T Consensus 130 ~~d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~ 185 (290)
T COG4026 130 YMDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEM 185 (290)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555555555555555555555555555555444433
No 293
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=83.23 E-value=1.3e+02 Score=37.43 Aligned_cols=69 Identities=19% Similarity=0.214 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Q 002662 435 ETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAREV-AWAKVSGLELDI 503 (895)
Q Consensus 435 ~~ra~l~~lEkk~reLEkqLeEEk~~~~~lqkei~elE~EireLeeELE~ek~e~ee-l~d~v~~LE~EL 503 (895)
.+......++.....-...++........+.+...+.....-.++.+|......|.. +.+++..++..+
T Consensus 518 ~Lse~aqqLE~~Lq~~qe~la~l~~QL~~Ar~~lqes~eea~~lR~EL~~QQ~~y~~alqekvsevEsrl 587 (739)
T PF07111_consen 518 QLSEVAQQLEQELQEKQESLAELEEQLEAARKSLQESTEEAAELRRELTQQQEVYERALQEKVSEVESRL 587 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444555555555556666666666655552 333444444433
No 294
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=83.21 E-value=75 Score=35.88 Aligned_cols=25 Identities=20% Similarity=0.163 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 404 RELEQQEVINKLQIAEKQSSLQVES 428 (895)
Q Consensus 404 ~~eElee~l~KLeE~EKk~r~elEd 428 (895)
++..+..+...|.+..++++.+++.
T Consensus 220 RLkKl~~eke~L~~qv~klk~qLee 244 (302)
T PF09738_consen 220 RLKKLADEKEELLEQVRKLKLQLEE 244 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444455555555555543
No 295
>PTZ00121 MAEBL; Provisional
Probab=83.00 E-value=1.9e+02 Score=39.05 Aligned_cols=13 Identities=46% Similarity=0.792 Sum_probs=6.2
Q ss_pred CCCCcccccCCCC
Q 002662 673 GIDGEQNIDLNKP 685 (895)
Q Consensus 673 ~~~~~~~~~~~~~ 685 (895)
|-+|..|.|.++-
T Consensus 1861 ~~~~~~~~~~~~~ 1873 (2084)
T PTZ00121 1861 GEDGNKEADFNKE 1873 (2084)
T ss_pred ccccccccccccc
Confidence 3445455554444
No 296
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=82.98 E-value=99 Score=35.87 Aligned_cols=29 Identities=21% Similarity=0.326 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002662 243 DFRSLQRSNTELRKQLESQVLEIDKLRNE 271 (895)
Q Consensus 243 ~Vr~Le~e~~eLr~qLee~~~~i~~lr~E 271 (895)
.-..+.++..+|+.+++++..++......
T Consensus 88 e~Es~~~kl~RL~~Ev~EL~eEl~~~~~~ 116 (388)
T PF04912_consen 88 EKESPEQKLQRLRREVEELKEELEKRKAD 116 (388)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 35678888888988888888777665443
No 297
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=82.93 E-value=81 Score=34.82 Aligned_cols=24 Identities=8% Similarity=0.290 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 318 ISAEQKHEMEDLNDRLSASMQSCT 341 (895)
Q Consensus 318 ~k~kLEsEleEL~~qLee~e~~~a 341 (895)
.+..|+.++..|++++......+.
T Consensus 82 ~l~~Lq~ql~~l~akI~k~~~el~ 105 (258)
T PF15397_consen 82 KLSKLQQQLEQLDAKIQKTQEELN 105 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444443
No 298
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=82.90 E-value=1.5e+02 Score=37.89 Aligned_cols=15 Identities=33% Similarity=0.716 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHH
Q 002662 278 RHEKEMKEMKESVSI 292 (895)
Q Consensus 278 r~e~El~El~e~lrk 292 (895)
+++++|.+++++..|
T Consensus 950 r~eKeL~~LrKkh~k 964 (1189)
T KOG1265|consen 950 RHEKELRDLRKKHQK 964 (1189)
T ss_pred HHHHHHHHHHHHhhH
Confidence 455555555555433
No 299
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=82.83 E-value=70 Score=34.04 Aligned_cols=16 Identities=13% Similarity=0.347 Sum_probs=8.1
Q ss_pred HHHHhhHHHHHHHHHH
Q 002662 455 CKEQNVSASWKKRVEE 470 (895)
Q Consensus 455 eEEk~~~~~lqkei~e 470 (895)
.+++.++..+++.+..
T Consensus 169 ~eEKekVi~YQkQLQ~ 184 (202)
T PF06818_consen 169 QEEKEKVIRYQKQLQQ 184 (202)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445555555555543
No 300
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=82.53 E-value=1.2e+02 Score=36.55 Aligned_cols=92 Identities=12% Similarity=0.131 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 002662 444 DNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAREVAWAKVSGLELDILAATRDLDFERRRLKAARER 523 (895)
Q Consensus 444 Ekk~reLEkqLeEEk~~~~~lqkei~elE~EireLeeELE~ek~e~eel~d~v~~LE~ELeka~r~LE~Ek~rLq~~rEr 523 (895)
..++.+|-.++....++...+..+-+.+..++...+++.+.+..+...+...+..|+.||...++-|+.+..-|-+.+-.
T Consensus 419 ~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr~NYE~QLs~MSEHLas 498 (518)
T PF10212_consen 419 MSRIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDELETTRRNYEEQLSMMSEHLAS 498 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 45555555555555455555556666666666666666666667777777777788888888888888877776665555
Q ss_pred HHHHHHHHHHhh
Q 002662 524 IMLRETQLRAFY 535 (895)
Q Consensus 524 L~~~eqqlkaei 535 (895)
+...+..++-+|
T Consensus 499 mNeqL~~Q~eeI 510 (518)
T PF10212_consen 499 MNEQLAKQREEI 510 (518)
T ss_pred HHHHHHHHHHHH
Confidence 555555554333
No 301
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=82.41 E-value=47 Score=37.91 Aligned_cols=22 Identities=23% Similarity=0.214 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 002662 293 SYLHQLKVLRDMLDAKQKELAE 314 (895)
Q Consensus 293 klE~QL~ELq~kLee~ekeL~e 314 (895)
-++.|+.+++.+|...+..+.+
T Consensus 174 fl~~ql~~~~~~l~~ae~~l~~ 195 (362)
T TIGR01010 174 FAENEVKEAEQRLNATKAELLK 195 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555553
No 302
>PF14992 TMCO5: TMCO5 family
Probab=82.10 E-value=73 Score=35.53 Aligned_cols=31 Identities=16% Similarity=0.198 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 426 VESLKLKLDETRERLVTSDNKVRLLETQVCK 456 (895)
Q Consensus 426 lEdLk~kLE~~ra~l~~lEkk~reLEkqLeE 456 (895)
+...+.++..+.+.+...++++.+++.....
T Consensus 111 lq~sk~~lqql~~~~~~qE~ei~kve~d~~~ 141 (280)
T PF14992_consen 111 LQFSKNKLQQLLESCASQEKEIAKVEDDYQQ 141 (280)
T ss_pred cHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566667777777777776666554333
No 303
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=81.95 E-value=15 Score=43.42 Aligned_cols=37 Identities=35% Similarity=0.496 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 002662 242 DDFRSLQRSNTELRKQLESQVLEIDKLRNENRVVVER 278 (895)
Q Consensus 242 d~Vr~Le~e~~eLr~qLee~~~~i~~lr~Ei~~i~er 278 (895)
|-||.|-.+..+++.++..+....+.|+.+.+.++.+
T Consensus 59 DTlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r 95 (472)
T TIGR03752 59 DTLRTLVAEVKELRKRLAKLISENEALKAENERLQKR 95 (472)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7799999999999999888888888887776655554
No 304
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=81.57 E-value=1e+02 Score=35.07 Aligned_cols=25 Identities=28% Similarity=0.282 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHH
Q 002662 254 LRKQLESQVLEIDKLRNENRVVVER 278 (895)
Q Consensus 254 Lr~qLee~~~~i~~lr~Ei~~i~er 278 (895)
|..+|+..+.+.+..+.-+..+..+
T Consensus 14 L~~eLe~cq~ErDqyKlMAEqLqer 38 (319)
T PF09789_consen 14 LSQELEKCQSERDQYKLMAEQLQER 38 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444433
No 305
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=81.43 E-value=22 Score=31.39 Aligned_cols=60 Identities=12% Similarity=0.145 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 294 YLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVT 353 (895)
Q Consensus 294 lE~QL~ELq~kLee~ekeL~el~~~k~kLEsEleEL~~qLee~e~~~aeL~kelkkLe~q 353 (895)
++..+..|+.+|+-+.+.+.-.....+.|..+......+|..+-..+.+|..++..++++
T Consensus 3 Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~e 62 (69)
T PF14197_consen 3 LEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKE 62 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555554444444444444444444444444444444444433333
No 306
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=81.40 E-value=71 Score=33.64 Aligned_cols=53 Identities=19% Similarity=0.263 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 445 NKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAREVAWAKVS 497 (895)
Q Consensus 445 kk~reLEkqLeEEk~~~~~lqkei~elE~EireLeeELE~ek~e~eel~d~v~ 497 (895)
...+.++.++.+.......+...+.+++.+|.+|+.+...+...++.....+.
T Consensus 110 e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~ 162 (190)
T PF05266_consen 110 EERKKLEKKIEEKEAELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEIS 162 (190)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555555543333344444555555555555444444443333333333
No 307
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=80.73 E-value=27 Score=33.22 Aligned_cols=58 Identities=24% Similarity=0.290 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 447 VRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAREVAWAKVSGLELDIL 504 (895)
Q Consensus 447 ~reLEkqLeEEk~~~~~lqkei~elE~EireLeeELE~ek~e~eel~d~v~~LE~ELe 504 (895)
..-|-+.+-+++++...+...+...+..|+.++.|++.+.=.-+.+.+.|..|+.+|.
T Consensus 14 ~~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~ 71 (102)
T PF10205_consen 14 NQVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELE 71 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555667888888899999999999999999999998888888888888888776
No 308
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=80.52 E-value=1.3e+02 Score=35.57 Aligned_cols=29 Identities=17% Similarity=0.266 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 323 KHEMEDLNDRLSASMQSCTEANEIMKSQK 351 (895)
Q Consensus 323 EsEleEL~~qLee~e~~~aeL~kelkkLe 351 (895)
...+.+++.++.........+.+.+..+.
T Consensus 238 ~~~~~~ln~ql~~~~~~~~~~~a~l~~~~ 266 (458)
T COG3206 238 EQQLSALNTQLQSARARLAQAEARLASLL 266 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556666665555555555554433
No 309
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=80.45 E-value=1.7e+02 Score=36.82 Aligned_cols=27 Identities=26% Similarity=0.250 Sum_probs=17.5
Q ss_pred CcccccCCCCCCCCCCCCCcCCCCCCC
Q 002662 635 GDRTCKGGFGSDIDGVGTGPILEGDPI 661 (895)
Q Consensus 635 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 661 (895)
|+-+-+|-+---|+|--.+.-+|--|-
T Consensus 1164 p~~~k~gmWyaHFdGq~I~RQm~l~~~ 1190 (1259)
T KOG0163|consen 1164 PDNTKRGMWYAHFDGQWIARQMELHPD 1190 (1259)
T ss_pred CCCCccceEEEecCcHHHHhhheecCC
Confidence 444455666677788777777766553
No 310
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=80.38 E-value=1e+02 Score=35.22 Aligned_cols=14 Identities=21% Similarity=0.192 Sum_probs=7.0
Q ss_pred CCCCCccEEEEEcc
Q 002662 187 PPQHDLAFAFVFRD 200 (895)
Q Consensus 187 ~p~~e~af~FVF~d 200 (895)
+|.+.....|++..
T Consensus 27 ~p~Y~s~a~~~v~~ 40 (362)
T TIGR01010 27 SDRYVSESSFVVRS 40 (362)
T ss_pred cccceEEEEEEEec
Confidence 45555445555543
No 311
>PRK11519 tyrosine kinase; Provisional
Probab=79.59 E-value=95 Score=39.03 Aligned_cols=26 Identities=8% Similarity=0.019 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHH
Q 002662 494 AKVSGLELDILAATRDLDFERRRLKA 519 (895)
Q Consensus 494 d~v~~LE~ELeka~r~LE~Ek~rLq~ 519 (895)
.....|+++.+..+..|+.-.+++++
T Consensus 370 ~~~~~L~Re~~~~~~lY~~lL~r~~e 395 (719)
T PRK11519 370 QEIVRLTRDVESGQQVYMQLLNKQQE 395 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555554443
No 312
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=79.50 E-value=56 Score=32.30 Aligned_cols=52 Identities=13% Similarity=0.328 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 445 NKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAREVAWAKV 496 (895)
Q Consensus 445 kk~reLEkqLeEEk~~~~~lqkei~elE~EireLeeELE~ek~e~eel~d~v 496 (895)
.++..++.++++-.......+.++.++...+..+..++.........+..++
T Consensus 68 qRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki 119 (126)
T PF07889_consen 68 QRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKI 119 (126)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666666555555555555555555555555555544444444444
No 313
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=79.47 E-value=13 Score=44.50 Aligned_cols=60 Identities=22% Similarity=0.296 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 002662 307 AKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERN 366 (895)
Q Consensus 307 e~ekeL~el~~~k~kLEsEleEL~~qLee~e~~~aeL~kelkkLe~qI~ELkrqLEeEr~ 366 (895)
-..-+|.+++.+..+|.++|++++..+++++..+-..+-++..|+..|+..++++++-+.
T Consensus 90 sVs~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~ 149 (907)
T KOG2264|consen 90 SVSLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELRE 149 (907)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHh
Confidence 334455566777777888888888888888888887777888888888888877777553
No 314
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=79.43 E-value=29 Score=37.21 Aligned_cols=16 Identities=25% Similarity=0.405 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 002662 241 LDDFRSLQRSNTELRK 256 (895)
Q Consensus 241 ld~Vr~Le~e~~eLr~ 256 (895)
++++..|-.+...++.
T Consensus 113 I~R~~~ll~~l~~l~~ 128 (216)
T KOG1962|consen 113 IRRLHTLLRELATLRA 128 (216)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4555555555555553
No 315
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=79.19 E-value=15 Score=34.84 Aligned_cols=59 Identities=19% Similarity=0.282 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 002662 305 LDAKQKELAEISRISAEQKHEMEDLNDRL-SASMQSCTEANEIMKSQKVTIDELKTQLDE 363 (895)
Q Consensus 305 Lee~ekeL~el~~~k~kLEsEleEL~~qL-ee~e~~~aeL~kelkkLe~qI~ELkrqLEe 363 (895)
|.+....+..+...+.+++.++++|...| +++...++.+.++...++.....|+.+|.+
T Consensus 3 l~~e~~~r~~ae~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~k~~~le~~l~e 62 (100)
T PF06428_consen 3 LEEERERREEAEQEKEQIESELEELTASLFEEANKMVADARRERAALEEKNEQLEKQLKE 62 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666678888888888888888887 888888888887777777777667666644
No 316
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=79.18 E-value=41 Score=42.72 Aligned_cols=7 Identities=43% Similarity=0.444 Sum_probs=4.4
Q ss_pred eEEEEeC
Q 002662 149 SVCLKDT 155 (895)
Q Consensus 149 ~~~L~D~ 155 (895)
.++|.|-
T Consensus 409 sLvLlDE 415 (782)
T PRK00409 409 SLVLFDE 415 (782)
T ss_pred cEEEecC
Confidence 3677773
No 317
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=78.91 E-value=1.8e+02 Score=36.47 Aligned_cols=35 Identities=23% Similarity=0.289 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 315 ISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKS 349 (895)
Q Consensus 315 l~~~k~kLEsEleEL~~qLee~e~~~aeL~kelkk 349 (895)
+.....++..++..+...|......+.++...+..
T Consensus 173 ~~k~~~~~~~~~~~~~~~l~~v~~~~~~~~~~l~~ 207 (670)
T KOG0239|consen 173 ALKESLKLESDLGDLVTELEHVTNSISELESVLKS 207 (670)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34445555555555555555555555544444443
No 318
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=78.82 E-value=90 Score=39.28 Aligned_cols=23 Identities=22% Similarity=-0.005 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHH
Q 002662 495 KVSGLELDILAATRDLDFERRRL 517 (895)
Q Consensus 495 ~v~~LE~ELeka~r~LE~Ek~rL 517 (895)
....|+++.+..+..|+.-.++.
T Consensus 371 ~~~~L~R~~~~~~~lY~~lL~r~ 393 (726)
T PRK09841 371 EVLRLSRDVEAGRAVYLQLLNRQ 393 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455554444454444443
No 319
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=78.71 E-value=32 Score=32.27 Aligned_cols=63 Identities=19% Similarity=0.263 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 294 YLHQLKVLRDMLDAKQKELAEISRISAEQKH---EMEDLNDRLSASMQSCTEANEIMKSQKVTIDE 356 (895)
Q Consensus 294 lE~QL~ELq~kLee~ekeL~el~~~k~kLEs---EleEL~~qLee~e~~~aeL~kelkkLe~qI~E 356 (895)
+-.++..++.+++.++.++..++..+.++.. +..+|..++......+..+..++..++.++..
T Consensus 34 ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~ 99 (108)
T PF02403_consen 34 LDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEELNE 99 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555555555555544 34455555555555555555554444444443
No 320
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=78.66 E-value=2.1e+02 Score=36.83 Aligned_cols=84 Identities=19% Similarity=0.126 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 002662 293 SYLHQLKVLRDMLDAKQKELAE-------ISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEER 365 (895)
Q Consensus 293 klE~QL~ELq~kLee~ekeL~e-------l~~~k~kLEsEleEL~~qLee~e~~~aeL~kelkkLe~qI~ELkrqLEeEr 365 (895)
++..++.++..+|++++..... ....+...+.....|..++..++.....+..++..+.. +...|-+++
T Consensus 471 ~ls~el~el~k~l~~Ke~l~rr~~~~~~~~~~~~~~~e~~~~~le~e~~~le~E~~~l~~el~~~~~----~~~kl~eer 546 (913)
T KOG0244|consen 471 SLSGELSELEKRLAEKEPLTRRKAYEKAEKSKAKEQYESDSGTLEAEKSPLESERSRLRNELNVFNR----LAAKLGEER 546 (913)
T ss_pred hhhHHHHHHHhhhccccHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHhcccccccHHHHHHHHhhhH----HHHHhhhHH
Confidence 3444555555555554443332 22223333333333333333333333333333333332 223444666
Q ss_pred HHHHHHHHHHHHHHH
Q 002662 366 NLRRVDRENAEADLK 380 (895)
Q Consensus 366 ~~~~EElEe~~~eLk 380 (895)
..++..+|..+..++
T Consensus 547 ~qklk~le~q~s~lk 561 (913)
T KOG0244|consen 547 VQKLKSLETQISLLK 561 (913)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666667766666654
No 321
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=78.57 E-value=1.9e+02 Score=36.31 Aligned_cols=27 Identities=37% Similarity=0.480 Sum_probs=17.0
Q ss_pred hhhhhhhhhhhcccccccccCCCCCCCCCCCCCCCCC
Q 002662 733 TIRTADLLASEVAGSWACSTAPSVHGENESPRSRDNN 769 (895)
Q Consensus 733 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 769 (895)
+|+|.--+--=|.-|| |.||-|-|+.+
T Consensus 1370 AIGTGmSILlMVVQSW----------EEESRRlRgKD 1396 (1480)
T COG3096 1370 AIGTGMSILVMVVQSW----------EEESRRLRGKD 1396 (1480)
T ss_pred ccccCchhhHHHHHHH----------HHHHHhcccCC
Confidence 5666655555577777 45677777644
No 322
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=78.36 E-value=1.3e+02 Score=34.34 Aligned_cols=27 Identities=33% Similarity=0.367 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 461 SASWKKRVEELENEIKKLREELESEKA 487 (895)
Q Consensus 461 ~~~lqkei~elE~EireLeeELE~ek~ 487 (895)
+..+..++...+.+.+-|+++++.++.
T Consensus 254 re~LRAel~ree~r~K~lKeEmeSLke 280 (561)
T KOG1103|consen 254 REFLRAELEREEKRQKMLKEEMESLKE 280 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555555555566666666543
No 323
>PRK10698 phage shock protein PspA; Provisional
Probab=78.34 E-value=1e+02 Score=33.14 Aligned_cols=9 Identities=11% Similarity=0.309 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 002662 298 LKVLRDMLD 306 (895)
Q Consensus 298 L~ELq~kLe 306 (895)
+.++-.+.+
T Consensus 15 in~~ldkaE 23 (222)
T PRK10698 15 INALLEKAE 23 (222)
T ss_pred HHHHHHhhc
Confidence 333333333
No 324
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=78.00 E-value=33 Score=30.50 Aligned_cols=54 Identities=15% Similarity=0.174 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 286 MKESVSISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQS 339 (895)
Q Consensus 286 l~e~lrkklE~QL~ELq~kLee~ekeL~el~~~k~kLEsEleEL~~qLee~e~~ 339 (895)
+.+.+.+.|..+.++.+..+...++.+.........|...+..|..++..+...
T Consensus 11 ale~Lq~~y~~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~q 64 (70)
T PF04899_consen 11 ALEELQQSYEKQQQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQ 64 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444445555555555555555555544444444444444444444444333
No 325
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=77.48 E-value=4.1 Score=45.96 Aligned_cols=24 Identities=17% Similarity=0.187 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 241 LDDFRSLQRSNTELRKQLESQVLE 264 (895)
Q Consensus 241 ld~Vr~Le~e~~eLr~qLee~~~~ 264 (895)
.+++-.|+..+..|...+.....+
T Consensus 34 ~eRLsaLEssv~sL~~SVs~lss~ 57 (326)
T PF04582_consen 34 RERLSALESSVASLSDSVSSLSST 57 (326)
T ss_dssp ------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444443333333
No 326
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=77.36 E-value=1.1e+02 Score=33.13 Aligned_cols=8 Identities=38% Similarity=0.069 Sum_probs=4.1
Q ss_pred HHhhhhHH
Q 002662 532 RAFYSTTE 539 (895)
Q Consensus 532 kaeiEk~E 539 (895)
++.+...|
T Consensus 142 ~~dv~~~e 149 (251)
T PF11932_consen 142 DADVSLAE 149 (251)
T ss_pred ccCCCHHH
Confidence 44555555
No 327
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=77.12 E-value=1.3e+02 Score=33.82 Aligned_cols=15 Identities=13% Similarity=0.067 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHH
Q 002662 490 EVAWAKVSGLELDIL 504 (895)
Q Consensus 490 eel~d~v~~LE~ELe 504 (895)
.++.+..+.|++||.
T Consensus 69 ~elneEkrtLeRELA 83 (351)
T PF07058_consen 69 QELNEEKRTLERELA 83 (351)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444455555554
No 328
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=77.12 E-value=2.1e+02 Score=36.16 Aligned_cols=34 Identities=26% Similarity=0.341 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 293 SYLHQLKVLRDMLDAKQKELAEISRISAEQKHEM 326 (895)
Q Consensus 293 klE~QL~ELq~kLee~ekeL~el~~~k~kLEsEl 326 (895)
.++.....+...++++.++++.+...+.+++++|
T Consensus 999 efE~~mrdhrselEe~kKe~eaiineiee~eaeI 1032 (1424)
T KOG4572|consen 999 EFEIEMRDHRSELEEKKKELEAIINEIEELEAEI 1032 (1424)
T ss_pred HHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555555555555555555555555544
No 329
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=77.12 E-value=94 Score=32.07 Aligned_cols=14 Identities=36% Similarity=0.508 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHhHH
Q 002662 349 SQKVTIDELKTQLD 362 (895)
Q Consensus 349 kLe~qI~ELkrqLE 362 (895)
.++..+.+|+.++.
T Consensus 55 ~~~a~~~eLr~el~ 68 (177)
T PF07798_consen 55 LFKAAIAELRSELQ 68 (177)
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444443333
No 330
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=77.06 E-value=3.8 Score=50.32 Aligned_cols=29 Identities=17% Similarity=0.313 Sum_probs=16.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCccch
Q 002662 31 ASQSSSSHPPHQNPNATSPKKTVVPSHFV 59 (895)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 59 (895)
++|.|.|.||..+||.+.+++++++--++
T Consensus 538 G~g~pppPppPPlpggag~PPPPpplPg~ 566 (1102)
T KOG1924|consen 538 GTGPPPPPPPPPLPGGAGPPPPPPPLPGI 566 (1102)
T ss_pred CCCCCCCCCCCCCCCCCCCCccCCCCCcc
Confidence 44455555566777766666555444444
No 331
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=76.86 E-value=85 Score=36.72 Aligned_cols=27 Identities=15% Similarity=0.279 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002662 244 FRSLQRSNTELRKQLESQVLEIDKLRN 270 (895)
Q Consensus 244 Vr~Le~e~~eLr~qLee~~~~i~~lr~ 270 (895)
+..+-.++.+++.....+...++.|+.
T Consensus 214 l~~~~~el~eik~~~~~L~~~~e~Lk~ 240 (395)
T PF10267_consen 214 LQKILEELREIKESQSRLEESIEKLKE 240 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444333333
No 332
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=76.67 E-value=1.1e+02 Score=33.97 Aligned_cols=53 Identities=19% Similarity=0.271 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 303 DMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTID 355 (895)
Q Consensus 303 ~kLee~ekeL~el~~~k~kLEsEleEL~~qLee~e~~~aeL~kelkkLe~qI~ 355 (895)
.++...+.++......+.+.+.++.++..++.+...++.+|...-.++...+.
T Consensus 200 r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~ 252 (269)
T PF05278_consen 200 RKLELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIK 252 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444444444444444443333
No 333
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=76.67 E-value=72 Score=31.52 Aligned_cols=27 Identities=22% Similarity=0.316 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002662 245 RSLQRSNTELRKQLESQVLEIDKLRNE 271 (895)
Q Consensus 245 r~Le~e~~eLr~qLee~~~~i~~lr~E 271 (895)
|.|......+-++|+..-+.+...+++
T Consensus 39 r~m~~A~~~v~kql~~vs~~l~~tKkh 65 (126)
T PF07889_consen 39 RSMSDAVASVSKQLEQVSESLSSTKKH 65 (126)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666666655554444443
No 334
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=76.52 E-value=1.8e+02 Score=34.96 Aligned_cols=26 Identities=12% Similarity=0.109 Sum_probs=10.8
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHhhh
Q 002662 533 AFYSTTEEISVLFARQQEQLKAMQKT 558 (895)
Q Consensus 533 aeiEk~EEiee~rk~~~~qLr~LQ~~ 558 (895)
..|+++.-+...|.+.=+.|...+..
T Consensus 377 ~Lydkl~~f~~~~~klG~~L~~a~~~ 402 (475)
T PRK10361 377 KLYDKMRLFVDDMSAIGQSLDKAQDN 402 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455544443343444444443333
No 335
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=76.32 E-value=78 Score=35.08 Aligned_cols=61 Identities=20% Similarity=0.336 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 298 LKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELK 358 (895)
Q Consensus 298 L~ELq~kLee~ekeL~el~~~k~kLEsEleEL~~qLee~e~~~aeL~kelkkLe~qI~ELk 358 (895)
+......++.....+.+....++.+...+.+...+|..++.....+.+.+..++..+..|+
T Consensus 202 l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sKV~kf~ 262 (269)
T PF05278_consen 202 LELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSKVEKFH 262 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4444444555555555556666666666667777777777777777777777776666554
No 336
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=76.20 E-value=1.5e+02 Score=33.84 Aligned_cols=44 Identities=20% Similarity=0.318 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 462 ASWKKRVEELENEIKKLREELESEKAAREVAWAKVSGLELDILA 505 (895)
Q Consensus 462 ~~lqkei~elE~EireLeeELE~ek~e~eel~d~v~~LE~ELek 505 (895)
.+++.++..++..++.+-.|.+.+..+++....++..|-.||.-
T Consensus 136 Ek~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn~ 179 (319)
T PF09789_consen 136 EKLREQIEQLERDLQSLLDEKEELVTERDAYKCKAHRLNHELNY 179 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34477778888888888888888888888888899888888864
No 337
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=76.08 E-value=1.1e+02 Score=32.28 Aligned_cols=88 Identities=22% Similarity=0.208 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 002662 440 LVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAREVAWAKVSGLELDILAATRDLDFERRRLKA 519 (895)
Q Consensus 440 l~~lEkk~reLEkqLeEEk~~~~~lqkei~elE~EireLeeELE~ek~e~eel~d~v~~LE~ELeka~r~LE~Ek~rLq~ 519 (895)
+..|+.++++.+..+.++...+...+..+.....-.......+..+...+..+...+...+.-...+..+|.....-|..
T Consensus 69 veqLe~ev~EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~~q~~~L~~~l~~a~~nl~~a~~~a~~AQ~el~eK~qLLea 148 (188)
T PF05335_consen 69 VEQLEQEVREAEAVVQEEKASLQQAQANAQAAQRAAQQAQQQLETLKAALKAAQANLANAEQVAEGAQQELAEKTQLLEA 148 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444444444444444444444444444444333344444443333333
Q ss_pred HHHHHHHH
Q 002662 520 ARERIMLR 527 (895)
Q Consensus 520 ~rErL~~~ 527 (895)
.+.|+...
T Consensus 149 Ak~Rve~L 156 (188)
T PF05335_consen 149 AKRRVEEL 156 (188)
T ss_pred HHHHHHHH
Confidence 33333333
No 338
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=75.95 E-value=5.3 Score=49.20 Aligned_cols=16 Identities=19% Similarity=0.075 Sum_probs=9.7
Q ss_pred cCCCcccccceEEEEe
Q 002662 118 IDSNAVSANHCKIYRK 133 (895)
Q Consensus 118 i~~~~IS~~Hc~I~~~ 133 (895)
|....+|..-|.+-..
T Consensus 634 I~p~d~s~~cFWvkv~ 649 (1102)
T KOG1924|consen 634 IVPRDLSENCFWVKVN 649 (1102)
T ss_pred cCccccCccceeeecc
Confidence 5555677776665443
No 339
>PRK10698 phage shock protein PspA; Provisional
Probab=75.94 E-value=1.2e+02 Score=32.65 Aligned_cols=34 Identities=15% Similarity=0.241 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 002662 428 SLKLKLDETRERLVTSDNKVRLLETQVCKEQNVS 461 (895)
Q Consensus 428 dLk~kLE~~ra~l~~lEkk~reLEkqLeEEk~~~ 461 (895)
.|...++.....+..|...+..|..++.+.+.+.
T Consensus 103 ~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~ 136 (222)
T PRK10698 103 TLEHEVTLVDETLARMKKEIGELENKLSETRARQ 136 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333344444444444444433333
No 340
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=75.84 E-value=68 Score=40.73 Aligned_cols=12 Identities=42% Similarity=0.415 Sum_probs=7.3
Q ss_pred eEEEEeCCCCce
Q 002662 149 SVCLKDTSTNGT 160 (895)
Q Consensus 149 ~~~L~D~StNGT 160 (895)
.++|.|--.+||
T Consensus 404 sLvLlDE~g~Gt 415 (771)
T TIGR01069 404 SLVLFDELGAGT 415 (771)
T ss_pred cEEEecCCCCCC
Confidence 478888544444
No 341
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=75.68 E-value=89 Score=34.75 Aligned_cols=27 Identities=22% Similarity=0.322 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 298 LKVLRDMLDAKQKELAEISRISAEQKH 324 (895)
Q Consensus 298 L~ELq~kLee~ekeL~el~~~k~kLEs 324 (895)
|++-..+|.+-+.++.+|..++.+|+.
T Consensus 77 Lkes~~~l~dRetEI~eLksQL~RMrE 103 (305)
T PF15290_consen 77 LKESENRLHDRETEIDELKSQLARMRE 103 (305)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 333333344444444444444444433
No 342
>KOG2008 consensus BTK-associated SH3-domain binding protein SAB [Signal transduction mechanisms]
Probab=75.51 E-value=1.5e+02 Score=33.54 Aligned_cols=84 Identities=19% Similarity=0.154 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 421 QSSLQVESLKLKLDETRERLVTSDNKV-----RLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAREVAWAK 495 (895)
Q Consensus 421 k~r~elEdLk~kLE~~ra~l~~lEkk~-----reLEkqLeEEk~~~~~lqkei~elE~EireLeeELE~ek~e~eel~d~ 495 (895)
+...+++.++.-|.-+++++.-++..+ +.|+. .|...+...-+.+.+.+.+....+.---.--..|-.+...
T Consensus 87 kAa~~FeRat~vl~~AkeqVsl~~~sL~~~~~~~~~~---~~~evlnh~~qrV~EaE~e~t~aE~~Has~a~~~l~l~~~ 163 (426)
T KOG2008|consen 87 KAAQDFERATEVLRAAKEQVSLAEQSLLEDDKRQFDS---AWQEVLNHATQRVMEAEQEKTRAELVHASTAARYLALMGR 163 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555554333 33333 3555555556666666655444333222233366677777
Q ss_pred HHHHHHHHHHHH
Q 002662 496 VSGLELDILAAT 507 (895)
Q Consensus 496 v~~LE~ELeka~ 507 (895)
+++|+++...|+
T Consensus 164 ~R~~ek~n~~AI 175 (426)
T KOG2008|consen 164 MRQLEKKNKRAI 175 (426)
T ss_pred HHHHHHHhHHHH
Confidence 888888776554
No 343
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=75.28 E-value=5.7 Score=44.84 Aligned_cols=106 Identities=11% Similarity=0.200 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 241 LDDFRSLQRSNTELRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKESVSISYLHQLKVLRDMLDAKQKELAEISRISA 320 (895)
Q Consensus 241 ld~Vr~Le~e~~eLr~qLee~~~~i~~lr~Ei~~i~er~e~El~El~e~lrkklE~QL~ELq~kLee~ekeL~el~~~k~ 320 (895)
..++..|..++..|+.....+...+..+... +.++...+ ..+...+.+++..|..+...+..+...+.
T Consensus 27 ~GDLs~I~eRLsaLEssv~sL~~SVs~lss~-----------iSdLss~L-~~l~~sl~~~~s~L~sLsstV~~lq~Sl~ 94 (326)
T PF04582_consen 27 PGDLSPIRERLSALESSVASLSDSVSSLSST-----------ISDLSSDL-QDLASSLADMTSELNSLSSTVTSLQSSLS 94 (326)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555554444443333333333 33333333 22333344444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 321 EQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELK 358 (895)
Q Consensus 321 kLEsEleEL~~qLee~e~~~aeL~kelkkLe~qI~ELk 358 (895)
.+...+..|...+......+..|+..+..+.-.|..|+
T Consensus 95 ~lsssVs~lS~~ls~h~ssIS~Lqs~v~~lsTdvsNLk 132 (326)
T PF04582_consen 95 SLSSSVSSLSSTLSDHSSSISDLQSSVSALSTDVSNLK 132 (326)
T ss_dssp -----------------------HHHHHHHHHHHHHHH
T ss_pred HHhhhHHhhhhhhhhhhhhHHHHHHhhhhhhhhhhhhh
Confidence 44444444444444444444444444444444444444
No 344
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=75.27 E-value=86 Score=30.71 Aligned_cols=34 Identities=12% Similarity=0.244 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 305 LDAKQKELAEISRISAEQKHEMEDLNDRLSASMQ 338 (895)
Q Consensus 305 Lee~ekeL~el~~~k~kLEsEleEL~~qLee~e~ 338 (895)
+..++.+++.+..++.+++.++.+....+++++.
T Consensus 15 ~QqLq~ql~~~~~qk~~le~qL~E~~~al~Ele~ 48 (119)
T COG1382 15 LQQLQQQLQKVILQKQQLEAQLKEIEKALEELEK 48 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3334444444445555555555554444444443
No 345
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=75.15 E-value=15 Score=32.18 Aligned_cols=49 Identities=16% Similarity=0.272 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 295 LHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEA 343 (895)
Q Consensus 295 E~QL~ELq~kLee~ekeL~el~~~k~kLEsEleEL~~qLee~e~~~aeL 343 (895)
+..+.+|+.++.-.+..+.+|+..+.+.+.+|..|..++..+..++.++
T Consensus 3 e~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~ 51 (69)
T PF04102_consen 3 EERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLREL 51 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344455555555555555555555555555544444444444444433
No 346
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=75.04 E-value=80 Score=30.25 Aligned_cols=30 Identities=43% Similarity=0.430 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 467 RVEELENEIKKLREELESEKAAREVAWAKV 496 (895)
Q Consensus 467 ei~elE~EireLeeELE~ek~e~eel~d~v 496 (895)
.......+|..|..+|..+...+..+.+.+
T Consensus 75 ~~~~k~~ei~~l~~~l~~l~~~~~k~e~~l 104 (126)
T PF13863_consen 75 KKEEKEAEIKKLKAELEELKSEISKLEEKL 104 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444443333
No 347
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=74.95 E-value=1.6e+02 Score=34.61 Aligned_cols=15 Identities=33% Similarity=0.539 Sum_probs=7.3
Q ss_pred hhhhhhhhhhhhccc
Q 002662 732 DTIRTADLLASEVAG 746 (895)
Q Consensus 732 ~~~~~~~~~~~~~~~ 746 (895)
||+.+-||=+.|+-+
T Consensus 363 dtl~viDlRt~eI~~ 377 (459)
T KOG0288|consen 363 DTLKVIDLRTKEIRQ 377 (459)
T ss_pred CceeeeecccccEEE
Confidence 345555555555443
No 348
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=74.82 E-value=1.1e+02 Score=31.50 Aligned_cols=26 Identities=27% Similarity=0.275 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002662 246 SLQRSNTELRKQLESQVLEIDKLRNE 271 (895)
Q Consensus 246 ~Le~e~~eLr~qLee~~~~i~~lr~E 271 (895)
.+...+.....+++.+......|..+
T Consensus 40 ~~~~~n~~~~~e~~~L~~d~e~L~~q 65 (158)
T PF09744_consen 40 SLASRNQEHEVELELLREDNEQLETQ 65 (158)
T ss_pred HHHHhhhhhhhHHHHHHHHHHHHHHH
Confidence 33344444443344444333333333
No 349
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=74.74 E-value=1.2e+02 Score=31.94 Aligned_cols=62 Identities=15% Similarity=0.170 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 327 EDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRRVDRENAEADLKAAVQKSQL 388 (895)
Q Consensus 327 eEL~~qLee~e~~~aeL~kelkkLe~qI~ELkrqLEeEr~~~~EElEe~~~eLk~qLqkl~~ 388 (895)
.++..++..++..+.+|...+..++..+..+++..++.+........+.+..|+.+.+.+..
T Consensus 123 ~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~~~ei~~lk~~~~ql~~ 184 (189)
T PF10211_consen 123 QELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEEKKHQEEIDFLKKQNQQLKA 184 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444333333322222233334444444443333
No 350
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=74.33 E-value=1.6e+02 Score=33.29 Aligned_cols=70 Identities=29% Similarity=0.381 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhH---HHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHH
Q 002662 244 FRSLQRSNTELRKQLESQVLEIDKLRNENR---VVVERHEKEMKEMKESV---------SISYLHQLKVLRDMLDAKQKE 311 (895)
Q Consensus 244 Vr~Le~e~~eLr~qLee~~~~i~~lr~Ei~---~i~er~e~El~El~e~l---------rkklE~QL~ELq~kLee~eke 311 (895)
|..|+.+|.+|..|++=..++.+-|..-.+ .-.+++-.-+.++.+.+ .+-|+.|+.+|+....-++++
T Consensus 2 Vdd~QN~N~EL~kQiEIcqEENkiLdK~hRQKV~EVEKLsqTi~ELEEaiLagGaaaNavrdYqrq~~elneEkrtLeRE 81 (351)
T PF07058_consen 2 VDDVQNQNQELMKQIEICQEENKILDKMHRQKVLEVEKLSQTIRELEEAILAGGAAANAVRDYQRQVQELNEEKRTLERE 81 (351)
T ss_pred chhhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788899999998887666544433221 11122222344444444 256666676666666666666
Q ss_pred HH
Q 002662 312 LA 313 (895)
Q Consensus 312 L~ 313 (895)
|.
T Consensus 82 LA 83 (351)
T PF07058_consen 82 LA 83 (351)
T ss_pred HH
Confidence 66
No 351
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=74.33 E-value=1.5e+02 Score=34.70 Aligned_cols=61 Identities=21% Similarity=0.233 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 429 LKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAR 489 (895)
Q Consensus 429 Lk~kLE~~ra~l~~lEkk~reLEkqLeEEk~~~~~lqkei~elE~EireLeeELE~ek~e~ 489 (895)
...++.+++..++.+++++..+-.++.-+++....+.+.+...|.+|+.|++|...+..++
T Consensus 11 ~dqr~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~ 71 (459)
T KOG0288|consen 11 NDQRLIDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEER 71 (459)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666777777777777777777777777777777777778887777776665443
No 352
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=74.27 E-value=2.9e+02 Score=36.34 Aligned_cols=284 Identities=14% Similarity=0.061 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 242 DDFRSLQRSNTELRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKESVS-----ISYLHQLKVLRDMLDAKQKELAEIS 316 (895)
Q Consensus 242 d~Vr~Le~e~~eLr~qLee~~~~i~~lr~Ei~~i~er~e~El~El~e~lr-----kklE~QL~ELq~kLee~ekeL~el~ 316 (895)
++.+.+...+..|+.++.....-.......+..........+..+...+. .....++.++...+......+..+.
T Consensus 187 ~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (1042)
T TIGR00618 187 AKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQLLKQLR 266 (1042)
T ss_pred HHHHHHHHHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 317 RISAEQKHEMEDLNDRLSASMQSCT-----EANEIMKSQKVTIDELKTQLDEERNLRRVDRENAEADLKAAVQKSQLETQ 391 (895)
Q Consensus 317 ~~k~kLEsEleEL~~qLee~e~~~a-----eL~kelkkLe~qI~ELkrqLEeEr~~~~EElEe~~~eLk~qLqkl~~El~ 391 (895)
.....+..++..+............ .+......+..++..+...+..........+.. ...+......+...+.
T Consensus 267 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 345 (1042)
T TIGR00618 267 ARIEELRAQEAVLEETQERINRARKAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMK-RAAHVKQQSSIEEQRR 345 (1042)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q ss_pred HHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 002662 392 EKLK--------RLSDAASRRELEQQEVINKLQIAEKQSSLQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSAS 463 (895)
Q Consensus 392 eerk--------k~eee~~~~~eElee~l~KLeE~EKk~r~elEdLk~kLE~~ra~l~~lEkk~reLEkqLeEEk~~~~~ 463 (895)
.+.. ...........+.-..+............++......+...+..+..++..+......+...+.....
T Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 425 (1042)
T TIGR00618 346 LLQTLHSQEIHIRDAHEVATSIREISCQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQ 425 (1042)
T ss_pred HHHHHHHhChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred H---------HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 002662 464 W---------KKRVEELENEIKKLRE-ELESEKAAREVAWAKVSGLELDILAATRDLDFERRRLKAARERIML 526 (895)
Q Consensus 464 l---------qkei~elE~EireLee-ELE~ek~e~eel~d~v~~LE~ELeka~r~LE~Ek~rLq~~rErL~~ 526 (895)
+ ...+..+......+.. .+......+..+...+......++.....+..+.........|...
T Consensus 426 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~r~~l 498 (1042)
T TIGR00618 426 LAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQETRKKAVVLARLLE 498 (1042)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 353
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=73.47 E-value=1.4e+02 Score=32.45 Aligned_cols=68 Identities=21% Similarity=0.297 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 384 QKSQLETQEKLKRLSDAASRRELEQQEVINKLQIAEKQ------SSLQVESLKLKLDETRERLVTSDNKVRLLE 451 (895)
Q Consensus 384 qkl~~El~eerkk~eee~~~~~eElee~l~KLeE~EKk------~r~elEdLk~kLE~~ra~l~~lEkk~reLE 451 (895)
++...++..|+....+.+..+++.++..+..|....++ ....++.+...+++.+-++..|+.-++.|+
T Consensus 117 e~ek~e~~~wl~~~Id~L~~QiE~~E~E~E~L~~~~kKkk~~~~~~~r~~~l~~~ierhk~Hi~kLE~lLR~L~ 190 (233)
T PF04065_consen 117 EKEKEEARDWLKDSIDELNRQIEQLEAEIESLSSQKKKKKKDSTKQERIEELESRIERHKFHIEKLELLLRLLD 190 (233)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455667788877777778888888887777655442 234466777777777766666666555543
No 354
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=73.41 E-value=46 Score=35.17 Aligned_cols=39 Identities=21% Similarity=0.255 Sum_probs=25.7
Q ss_pred ccccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 224 NKRLKGIGICSPDGPLSLDDFRSLQRSNTELRKQLESQVLE 264 (895)
Q Consensus 224 s~~~~G~~~sa~~~~~~ld~Vr~Le~e~~eLr~qLee~~~~ 264 (895)
++.++|+-|+++.+.- + ++-+|.+++.+|...|......
T Consensus 80 s~~~~gTdfS~~~~~d-w-EevrLkrELa~Le~~l~~~~~~ 118 (195)
T PF12761_consen 80 SYKEKGTDFSATEGTD-W-EEVRLKRELAELEEKLSKVEQA 118 (195)
T ss_pred CCCCCCCCCCCCCCCc-h-HHHHHHHHHHHHHHHHHHHHHH
Confidence 5788999998866532 3 3445777777777666655444
No 355
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=73.34 E-value=1e+02 Score=30.70 Aligned_cols=10 Identities=0% Similarity=-0.134 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 002662 488 AREVAWAKVS 497 (895)
Q Consensus 488 e~eel~d~v~ 497 (895)
+.+++...+.
T Consensus 85 EldDLL~ll~ 94 (136)
T PF04871_consen 85 ELDDLLVLLG 94 (136)
T ss_pred hHHHHHHHHH
Confidence 3333333333
No 356
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=73.07 E-value=1.2e+02 Score=32.06 Aligned_cols=46 Identities=13% Similarity=0.145 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 313 AEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELK 358 (895)
Q Consensus 313 ~el~~~k~kLEsEleEL~~qLee~e~~~aeL~kelkkLe~qI~ELk 358 (895)
..+...+.+|+..|.+|..+...+........+++.+++..+..++
T Consensus 127 ~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~ 172 (190)
T PF05266_consen 127 KELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALK 172 (190)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444433333
No 357
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=72.97 E-value=47 Score=28.78 Aligned_cols=36 Identities=22% Similarity=0.384 Sum_probs=17.1
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 455 CKEQNVSASWKKRVEELENEIKKLREELESEKAARE 490 (895)
Q Consensus 455 eEEk~~~~~lqkei~elE~EireLeeELE~ek~e~e 490 (895)
...+.....++.++++.+.+.++|..+|..++.+.+
T Consensus 21 ~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~e 56 (61)
T PF08826_consen 21 TKVKSANLAFESKLQEAEKRNRELEQEIERLKKEME 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444455555555555555555554444333
No 358
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=72.95 E-value=2e+02 Score=36.31 Aligned_cols=34 Identities=15% Similarity=0.264 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 468 VEELENEIKKLREELESEKAAREVAWAKVSGLEL 501 (895)
Q Consensus 468 i~elE~EireLeeELE~ek~e~eel~d~v~~LE~ 501 (895)
+-..+.++.+|+.+.+..+.-|..+..+...+..
T Consensus 365 ~p~~e~~~~~L~R~~~~~~~lY~~lL~r~~e~~i 398 (726)
T PRK09841 365 MPSTQQEVLRLSRDVEAGRAVYLQLLNRQQELSI 398 (726)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777888877777777777777765544
No 359
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=72.84 E-value=1.3e+02 Score=31.61 Aligned_cols=16 Identities=19% Similarity=0.115 Sum_probs=9.7
Q ss_pred CHHHHHHHHHHHHHHH
Q 002662 240 SLDDFRSLQRSNTELR 255 (895)
Q Consensus 240 ~ld~Vr~Le~e~~eLr 255 (895)
+-.+|-.|...+..+-
T Consensus 31 tR~dVi~L~e~Ld~~L 46 (189)
T PF10211_consen 31 TRQDVIQLQEWLDKML 46 (189)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 4577777776654443
No 360
>PRK04406 hypothetical protein; Provisional
Probab=72.56 E-value=30 Score=31.09 Aligned_cols=33 Identities=12% Similarity=0.229 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 298 LKVLRDMLDAKQKELAEISRISAEQKHEMEDLN 330 (895)
Q Consensus 298 L~ELq~kLee~ekeL~el~~~k~kLEsEleEL~ 330 (895)
+.+|+.++.=.+..+.+|+..+.+.+.+|..|.
T Consensus 13 i~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~ 45 (75)
T PRK04406 13 INDLECQLAFQEQTIEELNDALSQQQLLITKMQ 45 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333
No 361
>PRK11519 tyrosine kinase; Provisional
Probab=72.42 E-value=81 Score=39.64 Aligned_cols=37 Identities=19% Similarity=0.062 Sum_probs=19.8
Q ss_pred CCcccccCc-cccccccccccccccCCCCcCccccccccccc
Q 002662 580 ENSRTIVGE-KLPNGHHSNSAAKADSSGEASTTEKHDCDIRS 620 (895)
Q Consensus 580 rl~~mSgGE-Ks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (895)
-+-+-.||| ||++.. |. |.--... -.-+=--|||.|.
T Consensus 530 ~vts~~~geGKTt~a~-nL-A~~la~~--g~rvLlID~Dlr~ 567 (719)
T PRK11519 530 MMTGVSPSIGKTFVCA-NL-AAVISQT--NKRVLLIDCDMRK 567 (719)
T ss_pred EEECCCCCCCHHHHHH-HH-HHHHHhC--CCcEEEEeCCCCC
Confidence 344455899 998866 21 2111111 1224457899886
No 362
>PRK00295 hypothetical protein; Provisional
Probab=72.32 E-value=26 Score=30.76 Aligned_cols=38 Identities=16% Similarity=0.262 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 298 LKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSA 335 (895)
Q Consensus 298 L~ELq~kLee~ekeL~el~~~k~kLEsEleEL~~qLee 335 (895)
+.+|+.++.=.+..+.+|+..+.+.+.+|..|..+|..
T Consensus 7 i~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~ 44 (68)
T PRK00295 7 VTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAA 44 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444333333333
No 363
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=72.18 E-value=1.3e+02 Score=31.45 Aligned_cols=8 Identities=38% Similarity=0.480 Sum_probs=3.0
Q ss_pred HHHhHHHH
Q 002662 357 LKTQLDEE 364 (895)
Q Consensus 357 LkrqLEeE 364 (895)
+-..|+++
T Consensus 65 ~l~rLeEE 72 (182)
T PF15035_consen 65 ALIRLEEE 72 (182)
T ss_pred HHHHHHHH
Confidence 33333333
No 364
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=72.17 E-value=49 Score=39.79 Aligned_cols=18 Identities=17% Similarity=0.331 Sum_probs=11.0
Q ss_pred hhhcccccccccCCCCCC
Q 002662 741 ASEVAGSWACSTAPSVHG 758 (895)
Q Consensus 741 ~~~~~~~~~~~~~~~~~~ 758 (895)
.-++...+.+.+.|.++.
T Consensus 348 ~~~~~a~~~~~~vP~~~~ 365 (525)
T TIGR02231 348 SFELPAALNYRAVPSLNS 365 (525)
T ss_pred EEecccceEEEEcccCCc
Confidence 344555666777776653
No 365
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=71.98 E-value=4.8 Score=49.46 Aligned_cols=39 Identities=31% Similarity=0.327 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 295 LHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRL 333 (895)
Q Consensus 295 E~QL~ELq~kLee~ekeL~el~~~k~kLEsEleEL~~qL 333 (895)
..++..|...++.+.+.+.+....+..|..++..|...|
T Consensus 83 ~~~~~~L~~~le~l~~~~~eR~~~~~~L~~~~~~l~~~L 121 (619)
T PF03999_consen 83 KEQLPKLRPQLEELRKEKEERMQEFKELQEQLEQLCEEL 121 (619)
T ss_dssp ---------------------------------------
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 333444444455544444444444444444444444443
No 366
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=71.57 E-value=1.3e+02 Score=30.96 Aligned_cols=79 Identities=18% Similarity=0.226 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 252 TELRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKESVSISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLND 331 (895)
Q Consensus 252 ~eLr~qLee~~~~i~~lr~Ei~~i~er~e~El~El~e~lrkklE~QL~ELq~kLee~ekeL~el~~~k~kLEsEleEL~~ 331 (895)
..+-.+-.....++..|+.+...+...++.+. ..+++.+..+.++...+. .+..++..++..|+.+...|..
T Consensus 39 e~~~~~n~~~~~e~~~L~~d~e~L~~q~~~ek-----~~r~~~e~~l~~~Ed~~~---~e~k~L~~~v~~Le~e~r~L~~ 110 (158)
T PF09744_consen 39 ESLASRNQEHEVELELLREDNEQLETQYEREK-----ELRKQAEEELLELEDQWR---QERKDLQSQVEQLEEENRQLEL 110 (158)
T ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444555566666666665555544321 222334444443332222 2222344445555554444444
Q ss_pred HHHHHHH
Q 002662 332 RLSASMQ 338 (895)
Q Consensus 332 qLee~e~ 338 (895)
.+.....
T Consensus 111 ~~~~~~~ 117 (158)
T PF09744_consen 111 KLKNLSD 117 (158)
T ss_pred Hhhhhhh
Confidence 4433333
No 367
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=71.49 E-value=1.6e+02 Score=37.67 Aligned_cols=7 Identities=71% Similarity=1.189 Sum_probs=4.2
Q ss_pred CCCCCCC
Q 002662 647 IDGVGTG 653 (895)
Q Consensus 647 ~~~~~~~ 653 (895)
|||.||+
T Consensus 739 IHGkGtG 745 (782)
T PRK00409 739 IHGKGTG 745 (782)
T ss_pred EcCCChh
Confidence 5666653
No 368
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=71.46 E-value=63 Score=41.02 Aligned_cols=40 Identities=20% Similarity=0.239 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 002662 251 NTELRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKESV 290 (895)
Q Consensus 251 ~~eLr~qLee~~~~i~~lr~Ei~~i~er~e~El~El~e~l 290 (895)
......+++.+...+...+.++...+...++.+.++.+..
T Consensus 506 ~~~~~~~~~~li~~L~~~~~~~e~~~~~~~~~~~e~~~~~ 545 (771)
T TIGR01069 506 YGEFKEEINVLIEKLSALEKELEQKNEHLEKLLKEQEKLK 545 (771)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666655555555544444444444444333
No 369
>KOG4787 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.24 E-value=2.5e+02 Score=34.31 Aligned_cols=45 Identities=16% Similarity=0.178 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 444 DNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAA 488 (895)
Q Consensus 444 Ekk~reLEkqLeEEk~~~~~lqkei~elE~EireLeeELE~ek~e 488 (895)
+.+|+.|+..+.--......|.+++..+...+.+++..++.+.+.
T Consensus 500 ~~kIK~LE~e~R~S~~Ls~~L~~ElE~~~~~~~~~e~~~evL~~~ 544 (852)
T KOG4787|consen 500 ELKIKILELEKRLSEKLAIDLVSELEGKIPTIDEIEQCCEVLAAV 544 (852)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHhHHHHHHHHHHHH
Confidence 455555555444444455566777777777777777777777653
No 370
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=70.94 E-value=41 Score=34.29 Aligned_cols=60 Identities=30% Similarity=0.487 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 428 SLKLKLDETRERLVTSDNKVRLLETQVCKEQNV--SASWKKRVEELENEIKKLREELESEKA 487 (895)
Q Consensus 428 dLk~kLE~~ra~l~~lEkk~reLEkqLeEEk~~--~~~lqkei~elE~EireLeeELE~ek~ 487 (895)
.+..++..+++.+..+....+.|...+....+. ...+...+..++.++..++..|..++.
T Consensus 76 ~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 76 ELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333334444444444444444444444433321 123455555555566666655555554
No 371
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=70.65 E-value=1.3e+02 Score=30.82 Aligned_cols=23 Identities=13% Similarity=0.021 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 002662 331 DRLSASMQSCTEANEIMKSQKVT 353 (895)
Q Consensus 331 ~qLee~e~~~aeL~kelkkLe~q 353 (895)
..|.........+......+..+
T Consensus 77 ~~L~h~keKl~~~~~~~~~l~~~ 99 (177)
T PF13870_consen 77 QILTHVKEKLHFLSEELERLKQE 99 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 372
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=70.55 E-value=1.5e+02 Score=31.54 Aligned_cols=12 Identities=42% Similarity=0.556 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHH
Q 002662 294 YLHQLKVLRDML 305 (895)
Q Consensus 294 lE~QL~ELq~kL 305 (895)
|..++.+|+..|
T Consensus 45 y~~q~~~Lq~qL 56 (206)
T PF14988_consen 45 YAKQTSELQDQL 56 (206)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 373
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=70.44 E-value=80 Score=28.20 Aligned_cols=26 Identities=31% Similarity=0.337 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 474 EIKKLREELESEKAAREVAWAKVSGL 499 (895)
Q Consensus 474 EireLeeELE~ek~e~eel~d~v~~L 499 (895)
+...|+.+...++.++.....+++.|
T Consensus 40 e~~~L~~en~~L~~e~~~~~~rl~~L 65 (72)
T PF06005_consen 40 ENEELKEENEQLKQERNAWQERLRSL 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444433
No 374
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=70.32 E-value=2.3e+02 Score=33.44 Aligned_cols=18 Identities=22% Similarity=0.283 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 002662 294 YLHQLKVLRDMLDAKQKE 311 (895)
Q Consensus 294 lE~QL~ELq~kLee~eke 311 (895)
.+..|.++|.+|+.++.+
T Consensus 257 aEqsl~dlQk~Lekar~e 274 (575)
T KOG4403|consen 257 AEQSLEDLQKRLEKAREE 274 (575)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 444455555554444443
No 375
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=70.24 E-value=23 Score=36.11 Aligned_cols=21 Identities=24% Similarity=0.370 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 002662 312 LAEISRISAEQKHEMEDLNDR 332 (895)
Q Consensus 312 L~el~~~k~kLEsEleEL~~q 332 (895)
+..+......|+.++..|...
T Consensus 88 l~~l~~~~k~l~~eL~~L~~~ 108 (169)
T PF07106_consen 88 LAELKKEVKSLEAELASLSSE 108 (169)
T ss_pred HHHHHHHHHHHHHHHHHHhcC
Confidence 333333333333333333333
No 376
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=69.92 E-value=1.4e+02 Score=33.12 Aligned_cols=18 Identities=22% Similarity=0.075 Sum_probs=8.4
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 002662 536 STTEEISVLFARQQEQLK 553 (895)
Q Consensus 536 Ek~EEiee~rk~~~~qLr 553 (895)
..+++.++...-+..+|+
T Consensus 207 ~rqeeaensm~~i~ekl~ 224 (338)
T KOG3647|consen 207 IRQEEAENSMPFIPEKLI 224 (338)
T ss_pred HHHHHHHhcchhhHHHhh
Confidence 444544444444444443
No 377
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=69.65 E-value=2.4e+02 Score=33.37 Aligned_cols=45 Identities=22% Similarity=0.298 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 412 INKLQIAEKQSSLQVESLKLKLDETRERLVTSDNKVRLLETQVCK 456 (895)
Q Consensus 412 l~KLeE~EKk~r~elEdLk~kLE~~ra~l~~lEkk~reLEkqLeE 456 (895)
+..|+.+.-.++.++.++..++-.....+..++..+..+++.+..
T Consensus 287 i~~Lr~~~~~~~~~~~~l~~~~~~~~p~~~~~~~q~~~~~~~~~~ 331 (458)
T COG3206 287 IQDLRQQYAQVRQQIADLSTELGAKHPQLVALEAQLAELRQQIAA 331 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccChHHHhHHHHHHHHHHHHHH
Confidence 333333333334444444444444444444444444444444433
No 378
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=69.42 E-value=1.6e+02 Score=31.15 Aligned_cols=42 Identities=24% Similarity=0.241 Sum_probs=15.7
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 269 RNENRVVVERHEKEMKEMKESVSISYLHQLKVLRDMLDAKQK 310 (895)
Q Consensus 269 r~Ei~~i~er~e~El~El~e~lrkklE~QL~ELq~kLee~ek 310 (895)
+.+...++.....+..+....++..++..+.+-+..+...++
T Consensus 44 ~~eAe~~~ke~~~eakee~~~~r~~~E~E~~~~~~el~~~E~ 85 (201)
T PF12072_consen 44 EREAEAIKKEAELEAKEEAQKLRQELERELKERRKELQRLEK 85 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333344444443333333333
No 379
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=69.36 E-value=2.2e+02 Score=34.18 Aligned_cols=43 Identities=14% Similarity=0.159 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 412 INKLQIAEKQSSLQVESLKLKLDETRERLVTSDNKVRLLETQV 454 (895)
Q Consensus 412 l~KLeE~EKk~r~elEdLk~kLE~~ra~l~~lEkk~reLEkqL 454 (895)
++.+.+...++.-..-+.-.++++++.+++.|.+++-.+-.++
T Consensus 357 i~~i~e~v~eLqk~~ad~~~KI~~~k~r~~~Ls~RiLRv~ikq 399 (508)
T KOG3091|consen 357 INAIGERVTELQKHHADAVAKIEEAKNRHVELSHRILRVMIKQ 399 (508)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444443334556666666666666666655444433
No 380
>PF15372 DUF4600: Domain of unknown function (DUF4600)
Probab=69.29 E-value=97 Score=30.77 Aligned_cols=51 Identities=14% Similarity=0.163 Sum_probs=28.4
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHH-HHhhhhHHHHHHHHHHHHHHHHHHh
Q 002662 502 DILAATRDLDFERRRLKAARERIMLRETQL-RAFYSTTEEISVLFARQQEQLKAMQ 556 (895)
Q Consensus 502 ELeka~r~LE~Ek~rLq~~rErL~~~eqql-kaeiEk~EEiee~rk~~~~qLr~LQ 556 (895)
.|....++|+.++..|..++..+..++.|- ||++-..+ .|+.-+.+|..+-
T Consensus 55 ~l~~llkqLEkeK~~Le~qlk~~e~rLeQEsKAyhk~nd----eRr~ylaEi~~~s 106 (129)
T PF15372_consen 55 SLNQLLKQLEKEKRSLENQLKDYEWRLEQESKAYHKAND----ERRQYLAEISQTS 106 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH----HHHHHHHHHHhhh
Confidence 344556666667777766666666665554 65553333 3445455554443
No 381
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=69.27 E-value=1.1e+02 Score=29.93 Aligned_cols=30 Identities=17% Similarity=0.320 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002662 242 DDFRSLQRSNTELRKQLESQVLEIDKLRNE 271 (895)
Q Consensus 242 d~Vr~Le~e~~eLr~qLee~~~~i~~lr~E 271 (895)
..+..+-.+...|..++.........+..+
T Consensus 6 p~~q~~l~q~QqLq~ql~~~~~qk~~le~q 35 (119)
T COG1382 6 PEVQAQLAQLQQLQQQLQKVILQKQQLEAQ 35 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555556665555555443333333
No 382
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=69.12 E-value=99 Score=34.95 Aligned_cols=17 Identities=24% Similarity=0.331 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHhhhhhh
Q 002662 545 FARQQEQLKAMQKTLED 561 (895)
Q Consensus 545 rk~~~~qLr~LQ~~LEd 561 (895)
++.++.+++.++.+|+.
T Consensus 228 ke~L~~qv~klk~qLee 244 (302)
T PF09738_consen 228 KEELLEQVRKLKLQLEE 244 (302)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33566677777777755
No 383
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=69.06 E-value=3.7e+02 Score=35.30 Aligned_cols=67 Identities=12% Similarity=0.198 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 002662 299 KVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEER 365 (895)
Q Consensus 299 ~ELq~kLee~ekeL~el~~~k~kLEsEleEL~~qLee~e~~~aeL~kelkkLe~qI~ELkrqLEeEr 365 (895)
..|+.+++..+..|......+..++.++..++.+|...+..+....+.-..+..+...|++.+++..
T Consensus 479 ~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l~~~e~ii~~~~~se~~l~~~a~~l~~~~~~s~ 545 (1041)
T KOG0243|consen 479 ELLKEEKEKLKSKLQNKNKELESLKEELQQAKATLKEEEEIISQQEKSEEKLVDRATKLRRSLEESQ 545 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555566666666666666666666666666666666666555555555555555555555544
No 384
>PRK04325 hypothetical protein; Provisional
Probab=68.95 E-value=31 Score=30.84 Aligned_cols=7 Identities=14% Similarity=0.207 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 002662 315 ISRISAE 321 (895)
Q Consensus 315 l~~~k~k 321 (895)
|+..+.+
T Consensus 28 LN~vv~~ 34 (74)
T PRK04325 28 LNATVAR 34 (74)
T ss_pred HHHHHHH
Confidence 3333333
No 385
>PRK00736 hypothetical protein; Provisional
Probab=68.94 E-value=31 Score=30.31 Aligned_cols=37 Identities=27% Similarity=0.349 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 298 LKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLS 334 (895)
Q Consensus 298 L~ELq~kLee~ekeL~el~~~k~kLEsEleEL~~qLe 334 (895)
+.+|+.++.-.+..+.+|+..+.+.+.+|..|..+|.
T Consensus 7 i~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~ 43 (68)
T PRK00736 7 LTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLD 43 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444443333333333
No 386
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=68.73 E-value=2.5e+02 Score=33.29 Aligned_cols=9 Identities=11% Similarity=0.508 Sum_probs=0.0
Q ss_pred EEEEeCCCC
Q 002662 150 VCLKDTSTN 158 (895)
Q Consensus 150 ~~L~D~StN 158 (895)
+||.|..+|
T Consensus 42 IyI~Dp~~~ 50 (424)
T PF03915_consen 42 IYIQDPKSG 50 (424)
T ss_dssp ---------
T ss_pred eEeecCCCC
Confidence 666665444
No 387
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=68.49 E-value=2.5e+02 Score=33.25 Aligned_cols=15 Identities=40% Similarity=0.574 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHH
Q 002662 241 LDDFRSLQRSNTELR 255 (895)
Q Consensus 241 ld~Vr~Le~e~~eLr 255 (895)
+.+|+.|..++..|+
T Consensus 150 ~~Ev~~LRreLavLR 164 (424)
T PF03915_consen 150 LKEVQSLRRELAVLR 164 (424)
T ss_dssp ---------------
T ss_pred HHHHHHHHHHHHHHH
Confidence 456666666666666
No 388
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=68.40 E-value=51 Score=39.66 Aligned_cols=6 Identities=17% Similarity=0.313 Sum_probs=2.6
Q ss_pred CCCCcc
Q 002662 772 GPLGPH 777 (895)
Q Consensus 772 ~~~~~~ 777 (895)
|++.+.
T Consensus 384 G~~~v~ 389 (525)
T TIGR02231 384 GEVNIF 389 (525)
T ss_pred CceEEE
Confidence 444443
No 389
>PRK04406 hypothetical protein; Provisional
Probab=68.15 E-value=40 Score=30.28 Aligned_cols=41 Identities=22% Similarity=0.394 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 002662 321 EQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQL 361 (895)
Q Consensus 321 kLEsEleEL~~qLee~e~~~aeL~kelkkLe~qI~ELkrqL 361 (895)
.++..|.+|+.++.-.+..+.+|++.+.+++++|..|+++|
T Consensus 8 ~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql 48 (75)
T PRK04406 8 QLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQM 48 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555555555555555555444
No 390
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=68.06 E-value=2e+02 Score=33.94 Aligned_cols=62 Identities=15% Similarity=0.084 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 298 LKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKT 359 (895)
Q Consensus 298 L~ELq~kLee~ekeL~el~~~k~kLEsEleEL~~qLee~e~~~aeL~kelkkLe~qI~ELkr 359 (895)
..++...++....+-..+..++++++.+-.++...|.+.+....++......+-..-....+
T Consensus 178 ~~~~~~e~~~l~~eE~~L~q~lk~le~~~~~l~~~l~e~~~~~~~~~e~~~~~~~ey~~~~~ 239 (447)
T KOG2751|consen 178 EEDLLKELKNLKEEEERLLQQLEELEKEEAELDHQLKELEFKAERLNEEEDQYWREYNNFQR 239 (447)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444445666666666666666666666666666666555555444444443
No 391
>PRK02119 hypothetical protein; Provisional
Probab=67.41 E-value=37 Score=30.31 Aligned_cols=36 Identities=17% Similarity=0.266 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 298 LKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRL 333 (895)
Q Consensus 298 L~ELq~kLee~ekeL~el~~~k~kLEsEleEL~~qL 333 (895)
+.+|..++.=.+..+.+|+..+.+.+.+|..|..+|
T Consensus 11 i~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql 46 (73)
T PRK02119 11 IAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQL 46 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333334444443333333333333
No 392
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=67.16 E-value=1.9e+02 Score=34.38 Aligned_cols=143 Identities=13% Similarity=0.186 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHH
Q 002662 273 RVVVERHEKEMKEMKESVS----ISYLHQLKVLRDMLDAKQKELAE----------------ISRISAEQKHEMEDLNDR 332 (895)
Q Consensus 273 ~~i~er~e~El~El~e~lr----kklE~QL~ELq~kLee~ekeL~e----------------l~~~k~kLEsEleEL~~q 332 (895)
..+...-+..+.++....+ +-.+.++...+.++...+..+.. ....+.+|+.++.++..+
T Consensus 222 ~aLL~~sE~~VN~Ls~rar~D~v~~Ae~ev~~Ae~rl~~Ar~aL~~fRn~~gvlDP~~~a~~~~~lI~~Le~qLa~~~ae 301 (434)
T PRK15178 222 QRILSFAEQHVNTVSARMQKERILWLENDVKSAQENLGAARLELLKIQHIQKDIDPKETITAIYQLIAGFETQLAEAKAE 301 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 333 LSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRRVDREN-AEADLKAAVQKSQLETQEKLKRLSDAASRRELEQQEV 411 (895)
Q Consensus 333 Lee~e~~~aeL~kelkkLe~qI~ELkrqLEeEr~~~~EElEe-~~~eLk~qLqkl~~El~eerkk~eee~~~~~eElee~ 411 (895)
|..+......-.-.+..++.+|..|++++..++...-..--. .....-...+.+..+.+=..+.+..........-.++
T Consensus 302 L~~L~~~~~p~sPqV~~l~~rI~aLe~QIa~er~kl~~~~g~~~la~~laeYe~L~le~efAe~~y~sAlaaLE~AR~EA 381 (434)
T PRK15178 302 YAQLMVNGLDQNPLIPRLSAKIKVLEKQIGEQRNRLSNKLGSQGSSESLSLFEDLRLQSEIAKARWESALQTLQQGKLQA 381 (434)
T ss_pred HHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHH
Q 002662 412 INKL 415 (895)
Q Consensus 412 l~KL 415 (895)
..++
T Consensus 382 ~RQ~ 385 (434)
T PRK15178 382 LRER 385 (434)
T ss_pred Hhhh
No 393
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=67.04 E-value=1e+02 Score=28.26 Aligned_cols=35 Identities=29% Similarity=0.369 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 468 VEELENEIKKLREELESEKAAREVAWAKVSGLELD 502 (895)
Q Consensus 468 i~elE~EireLeeELE~ek~e~eel~d~v~~LE~E 502 (895)
+..++.++..++.++..+...+..+...+..++..
T Consensus 64 ~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~ 98 (106)
T PF01920_consen 64 IEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKK 98 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444445544444444444444444444333
No 394
>PRK02793 phi X174 lysis protein; Provisional
Probab=66.89 E-value=35 Score=30.35 Aligned_cols=25 Identities=12% Similarity=0.161 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 300 VLRDMLDAKQKELAEISRISAEQKH 324 (895)
Q Consensus 300 ELq~kLee~ekeL~el~~~k~kLEs 324 (895)
+|+.++.=.+..+.+|+..+.+.+.
T Consensus 12 ~LE~~lafQe~tIe~Ln~~v~~Qq~ 36 (72)
T PRK02793 12 ELESRLAFQEITIEELNVTVTAHEM 36 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 395
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=66.50 E-value=1.2e+02 Score=28.94 Aligned_cols=54 Identities=17% Similarity=0.189 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 294 YLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIM 347 (895)
Q Consensus 294 lE~QL~ELq~kLee~ekeL~el~~~k~kLEsEleEL~~qLee~e~~~aeL~kel 347 (895)
+..-+++...+...+.+....-.........+|..|..+|..+...+..+...+
T Consensus 51 f~~flken~~k~~rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~~~k~e~~l 104 (126)
T PF13863_consen 51 FDKFLKENEAKRERAEKRAEEEKKKKEEKEAEIKKLKAELEELKSEISKLEEKL 104 (126)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444444444444444444444444333
No 396
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=65.59 E-value=3.9e+02 Score=34.35 Aligned_cols=34 Identities=26% Similarity=0.323 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 472 ENEIKKLREELESEKAAREVAWAKVSGLELDILA 505 (895)
Q Consensus 472 E~EireLeeELE~ek~e~eel~d~v~~LE~ELek 505 (895)
+.+...+++.++.+..++.++-..+..+..+|+.
T Consensus 773 e~E~~~lEe~~d~~~ee~~el~a~v~~~~~qi~~ 806 (984)
T COG4717 773 EEELALLEEAIDALDEEVEELHAQVAALSRQIAQ 806 (984)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666777777777777776664
No 397
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=65.58 E-value=1e+02 Score=27.56 Aligned_cols=21 Identities=5% Similarity=0.243 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 002662 316 SRISAEQKHEMEDLNDRLSAS 336 (895)
Q Consensus 316 ~~~k~kLEsEleEL~~qLee~ 336 (895)
...+.+|...+.++...+..+
T Consensus 32 ~~~IKKLr~~~~e~e~~~~~l 52 (74)
T PF12329_consen 32 NNTIKKLRAKIKELEKQIKEL 52 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 398
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=65.31 E-value=3.1e+02 Score=33.02 Aligned_cols=6 Identities=17% Similarity=0.091 Sum_probs=2.3
Q ss_pred ceeecC
Q 002662 159 GTYVNC 164 (895)
Q Consensus 159 GTfVNg 164 (895)
.+|.+|
T Consensus 156 ~~~~~g 161 (508)
T KOG3091|consen 156 APYKFG 161 (508)
T ss_pred CccccC
Confidence 333333
No 399
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=64.75 E-value=22 Score=42.10 Aligned_cols=9 Identities=0% Similarity=-0.182 Sum_probs=5.5
Q ss_pred cEEEEEccc
Q 002662 193 AFAFVFRDV 201 (895)
Q Consensus 193 af~FVF~dt 201 (895)
..||+|..-
T Consensus 29 g~~~~~~~~ 37 (475)
T PRK13729 29 GALYLSDVD 37 (475)
T ss_pred ceEEEeccc
Confidence 467777643
No 400
>PRK00295 hypothetical protein; Provisional
Probab=64.70 E-value=42 Score=29.49 Aligned_cols=38 Identities=18% Similarity=0.348 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 002662 324 HEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQL 361 (895)
Q Consensus 324 sEleEL~~qLee~e~~~aeL~kelkkLe~qI~ELkrqL 361 (895)
..|.+|+.++.-.+..+.+|++.+.++.++|..|+++|
T Consensus 5 ~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql 42 (68)
T PRK00295 5 ERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQM 42 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555555555555555443
No 401
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=64.38 E-value=91 Score=27.58 Aligned_cols=39 Identities=15% Similarity=0.125 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 315 ISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVT 353 (895)
Q Consensus 315 l~~~k~kLEsEleEL~~qLee~e~~~aeL~kelkkLe~q 353 (895)
+..++...+..+..|...=+....++..+-..+.+|+.+
T Consensus 17 ~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E 55 (69)
T PF14197_consen 17 LTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEE 55 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333333
No 402
>PRK04325 hypothetical protein; Provisional
Probab=64.36 E-value=44 Score=29.87 Aligned_cols=40 Identities=23% Similarity=0.271 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 002662 322 QKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQL 361 (895)
Q Consensus 322 LEsEleEL~~qLee~e~~~aeL~kelkkLe~qI~ELkrqL 361 (895)
++..|.+|+.++.-.+..+.+|++.+.+++.+|..|+++|
T Consensus 7 ~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql 46 (74)
T PRK04325 7 MEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQL 46 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555555555555555555555443
No 403
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=64.36 E-value=1e+02 Score=27.40 Aligned_cols=60 Identities=17% Similarity=0.102 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 440 LVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAREVAWAKVSGL 499 (895)
Q Consensus 440 l~~lEkk~reLEkqLeEEk~~~~~lqkei~elE~EireLeeELE~ek~e~eel~d~v~~L 499 (895)
+.+++.=++.+.++..+|+..++.++........+-..|...+..+......+...+..|
T Consensus 9 l~ale~Lq~~y~~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ql~rL 68 (70)
T PF04899_consen 9 LSALEELQQSYEKQQQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQLERL 68 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445555556777777777777777777777666666666666655555555555444433
No 404
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=64.21 E-value=1.6e+02 Score=29.24 Aligned_cols=105 Identities=16% Similarity=0.191 Sum_probs=0.0
Q ss_pred eecccccccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 219 EYVSDNKRLKGIGICSPDGPLSLDDFRSLQRSNTELRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKESVSISYLHQL 298 (895)
Q Consensus 219 am~G~s~~~~G~~~sa~~~~~~ld~Vr~Le~e~~eLr~qLee~~~~i~~lr~Ei~~i~er~e~El~El~e~lrkklE~QL 298 (895)
.|-++..=.+-.+|+++....+...+..|+.+...|. ..-...+
T Consensus 4 ~ll~~~lllss~sfaA~~~~~v~~~l~~LEae~q~L~------------------------------------~kE~~r~ 47 (126)
T PF09403_consen 4 ILLLGMLLLSSISFAATATASVESELNQLEAEYQQLE------------------------------------QKEEARY 47 (126)
T ss_dssp -------------------HHHHHHHHHHHHHHHHHH------------------------------------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHH------------------------------------HHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 299 KVLRDMLDAKQKELAEISRISAEQKHEMEDLNDR-------------LSASMQSCTEANEIMKSQKVTIDELKT 359 (895)
Q Consensus 299 ~ELq~kLee~ekeL~el~~~k~kLEsEleEL~~q-------------Lee~e~~~aeL~kelkkLe~qI~ELkr 359 (895)
++.+..-+.++..+..+.+.....+..+..+... +.....-..+|.+.++..+..|.+|..
T Consensus 48 ~~~k~~ae~a~~~L~~~~~~~~~i~e~~~kl~~~~~~r~yk~eYk~llk~y~~~~~~L~k~I~~~e~iI~~fe~ 121 (126)
T PF09403_consen 48 NEEKQEAEAAEAELAELKELYAEIEEKIEKLKQDSKVRWYKDEYKELLKKYKDLLNKLDKEIAEQEQIIDNFEK 121 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 405
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=64.06 E-value=1.1e+02 Score=27.37 Aligned_cols=37 Identities=16% Similarity=0.093 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 314 EISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQ 350 (895)
Q Consensus 314 el~~~k~kLEsEleEL~~qLee~e~~~aeL~kelkkL 350 (895)
.+...+.-|+.++.+|..+-..+...+..|..+..++
T Consensus 15 ~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L 51 (72)
T PF06005_consen 15 QAVETIALLQMENEELKEKNNELKEENEELKEENEQL 51 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3344444444444444444333333333333333333
No 406
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=63.94 E-value=58 Score=30.53 Aligned_cols=9 Identities=22% Similarity=0.346 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 002662 448 RLLETQVCK 456 (895)
Q Consensus 448 reLEkqLeE 456 (895)
+.+...++.
T Consensus 39 r~l~~~~e~ 47 (108)
T PF02403_consen 39 RELQQELEE 47 (108)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 407
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=63.91 E-value=1.1e+02 Score=32.15 Aligned_cols=16 Identities=31% Similarity=0.443 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHhH
Q 002662 346 IMKSQKVTIDELKTQL 361 (895)
Q Consensus 346 elkkLe~qI~ELkrqL 361 (895)
.+..|+.++..|+.+|
T Consensus 111 ~l~~l~~~~~~l~~el 126 (188)
T PF03962_consen 111 ELEELKKELKELKKEL 126 (188)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333444444444333
No 408
>PRK15048 methyl-accepting chemotaxis protein II; Provisional
Probab=63.77 E-value=3.3e+02 Score=32.81 Aligned_cols=27 Identities=15% Similarity=0.313 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 242 DDFRSLQRSNTELRKQLESQVLEIDKL 268 (895)
Q Consensus 242 d~Vr~Le~e~~eLr~qLee~~~~i~~l 268 (895)
+++..|......+...+......+...
T Consensus 245 DEig~l~~s~n~m~~~l~~~i~~i~~~ 271 (553)
T PRK15048 245 SEMGDLAQSVSHMQRSLTDTVTHVREG 271 (553)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667677666666666655555544333
No 409
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=63.63 E-value=38 Score=29.74 Aligned_cols=33 Identities=27% Similarity=0.461 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 326 MEDLNDRLSASMQSCTEANEIMKSQKVTIDELK 358 (895)
Q Consensus 326 leEL~~qLee~e~~~aeL~kelkkLe~qI~ELk 358 (895)
|.+|+.+|.-.+..+.+|++.+.++..+|..|+
T Consensus 6 i~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~ 38 (69)
T PF04102_consen 6 IEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQ 38 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444433333
No 410
>PF11172 DUF2959: Protein of unknown function (DUF2959); InterPro: IPR021342 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=63.51 E-value=2.1e+02 Score=30.51 Aligned_cols=32 Identities=13% Similarity=0.175 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 293 SYLHQLKVLRDMLDAKQKELAEISRISAEQKH 324 (895)
Q Consensus 293 klE~QL~ELq~kLee~ekeL~el~~~k~kLEs 324 (895)
.|+..++.|+..++..+..-.++..++.+++.
T Consensus 61 dLe~~Y~~ln~~ye~s~~~A~~V~~RI~~vE~ 92 (201)
T PF11172_consen 61 DLEDKYNALNDEYESSEDAAEEVSDRIDAVED 92 (201)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555544444444444444
No 411
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=63.42 E-value=2.1e+02 Score=30.59 Aligned_cols=66 Identities=14% Similarity=0.220 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 293 SYLHQLKVLRDMLDAKQKELAE---------ISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELK 358 (895)
Q Consensus 293 klE~QL~ELq~kLee~ekeL~e---------l~~~k~kLEsEleEL~~qLee~e~~~aeL~kelkkLe~qI~ELk 358 (895)
++..-+..|+..+....+.+++ +...+..++..+.+....+.++......+.......+.++.+|.
T Consensus 6 ~~~~~~d~lq~~i~~as~~lNd~TGYs~Ie~LK~~i~~~E~~l~~~r~~~~~aK~~Y~~ai~~Rs~sQrEvn~LL 80 (207)
T PF05546_consen 6 KLSFYMDSLQETIFTASQALNDVTGYSEIEKLKKSIEELEDELEAARQEVREAKAAYDDAIQQRSSSQREVNELL 80 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555544443 44444444555555555555555555555544444444554443
No 412
>PRK02119 hypothetical protein; Provisional
Probab=63.16 E-value=56 Score=29.16 Aligned_cols=40 Identities=20% Similarity=0.343 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 002662 322 QKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQL 361 (895)
Q Consensus 322 LEsEleEL~~qLee~e~~~aeL~kelkkLe~qI~ELkrqL 361 (895)
++..|.+|+.++.-.+..+.+|++.+.++.++|..|+++|
T Consensus 7 ~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql 46 (73)
T PRK02119 7 LENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQL 46 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444555555555555555544444333
No 413
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=63.16 E-value=26 Score=41.62 Aligned_cols=47 Identities=15% Similarity=0.237 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 002662 464 WKKRVEELENEIKKLREELESEKAAREVAWAKVSGLELDILAATRDL 510 (895)
Q Consensus 464 lqkei~elE~EireLeeELE~ek~e~eel~d~v~~LE~ELeka~r~L 510 (895)
.+.++.+++++|..|+.+++.+.+..+++..+|+.|+.++...+.++
T Consensus 74 qQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 74 MQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555555555444444444
No 414
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=63.15 E-value=4.2e+02 Score=33.88 Aligned_cols=17 Identities=18% Similarity=0.372 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 002662 442 TSDNKVRLLETQVCKEQ 458 (895)
Q Consensus 442 ~lEkk~reLEkqLeEEk 458 (895)
.++.+.++++..|+.++
T Consensus 769 ~~~e~~~~~ea~leaer 785 (988)
T KOG2072|consen 769 EYEEKLKQFEARLEAER 785 (988)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34555555555555554
No 415
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=63.12 E-value=3.1e+02 Score=32.37 Aligned_cols=14 Identities=21% Similarity=0.060 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHH
Q 002662 541 ISVLFARQQEQLKA 554 (895)
Q Consensus 541 iee~rk~~~~qLr~ 554 (895)
+...|..+..++..
T Consensus 405 ~~~~r~e~~~~i~a 418 (446)
T KOG4438|consen 405 IARGREELESQIVA 418 (446)
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444444433
No 416
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=63.10 E-value=1.3e+02 Score=28.03 Aligned_cols=46 Identities=17% Similarity=0.146 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 002662 465 KKRVEELENEIKKLREELESEKAAREVAWAKVSGLELDILAATRDL 510 (895)
Q Consensus 465 qkei~elE~EireLeeELE~ek~e~eel~d~v~~LE~ELeka~r~L 510 (895)
...+..++.++..|..++.+..+.|-.+......|..++......+
T Consensus 23 ~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~ 68 (96)
T PF08647_consen 23 VKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQL 68 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 4444555555556666666666666666666655555555444333
No 417
>PF15456 Uds1: Up-regulated During Septation
Probab=62.79 E-value=1.6e+02 Score=29.00 Aligned_cols=25 Identities=20% Similarity=0.296 Sum_probs=13.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 240 SLDDFRSLQRSNTELRKQLESQVLE 264 (895)
Q Consensus 240 ~ld~Vr~Le~e~~eLr~qLee~~~~ 264 (895)
+.++|..|.++...|..+++....+
T Consensus 20 s~eEVe~LKkEl~~L~~R~~~lr~k 44 (124)
T PF15456_consen 20 SFEEVEELKKELRSLDSRLEYLRRK 44 (124)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466666666555555444444444
No 418
>PF14992 TMCO5: TMCO5 family
Probab=62.23 E-value=2.7e+02 Score=31.26 Aligned_cols=31 Identities=23% Similarity=0.305 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002662 242 DDFRSLQRSNTELRKQLESQVLEIDKLRNEN 272 (895)
Q Consensus 242 d~Vr~Le~e~~eLr~qLee~~~~i~~lr~Ei 272 (895)
.+.++|-..|..|-..+.+.+.++-+|.+++
T Consensus 11 ~d~Q~ldE~Nq~lL~ki~~~E~~iq~Le~Ei 41 (280)
T PF14992_consen 11 KDEQRLDEANQSLLQKIQEKEGAIQSLEREI 41 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888888877777777777777776
No 419
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=61.59 E-value=54 Score=39.51 Aligned_cols=16 Identities=38% Similarity=0.376 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHhhHHH
Q 002662 497 SGLELDILAATRDLDF 512 (895)
Q Consensus 497 ~~LE~ELeka~r~LE~ 512 (895)
.+|+.+++++.++|++
T Consensus 131 ~~Lk~~ieqaq~~~~E 146 (907)
T KOG2264|consen 131 SALKGEIEQAQRQLEE 146 (907)
T ss_pred HHHHhHHHHHHHHHHH
Confidence 3333444444444433
No 420
>PRK00736 hypothetical protein; Provisional
Probab=61.52 E-value=52 Score=28.93 Aligned_cols=37 Identities=16% Similarity=0.360 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 002662 325 EMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQL 361 (895)
Q Consensus 325 EleEL~~qLee~e~~~aeL~kelkkLe~qI~ELkrqL 361 (895)
.|.+|+.++.-.+..+.+|++.+.++.++|..|+++|
T Consensus 6 Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql 42 (68)
T PRK00736 6 RLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKL 42 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555555555555443
No 421
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=61.32 E-value=2.8e+02 Score=31.29 Aligned_cols=6 Identities=17% Similarity=-0.086 Sum_probs=2.8
Q ss_pred cccccc
Q 002662 628 QEAEFT 633 (895)
Q Consensus 628 ~~~~~~ 633 (895)
|.+.++
T Consensus 263 q~v~i~ 268 (346)
T PRK10476 263 DCATVY 268 (346)
T ss_pred CEEEEE
Confidence 445554
No 422
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=61.31 E-value=54 Score=31.45 Aligned_cols=43 Identities=30% Similarity=0.339 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 294 YLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSAS 336 (895)
Q Consensus 294 lE~QL~ELq~kLee~ekeL~el~~~k~kLEsEleEL~~qLee~ 336 (895)
++.++..+..++..++..+.++.+.-..|.-++..|..+|...
T Consensus 13 le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~ 55 (107)
T PF06156_consen 13 LEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEEL 55 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444444444444444443
No 423
>KOG0247 consensus Kinesin-like protein [Cytoskeleton]
Probab=61.15 E-value=2.8e+02 Score=34.94 Aligned_cols=114 Identities=14% Similarity=0.161 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH-------Hhh-
Q 002662 464 WKKRVEELENEIKKLREELESEKAAREVAWAKVSGLELDILAATRDLDFERRRLKAARERIMLRETQLR-------AFY- 535 (895)
Q Consensus 464 lqkei~elE~EireLeeELE~ek~e~eel~d~v~~LE~ELeka~r~LE~Ek~rLq~~rErL~~~eqqlk-------aei- 535 (895)
+..++...+..+.+++.+++.+.+..-.....+.-++.- .++++++.....++++...++.....++ ..+
T Consensus 539 ~~~~l~~kke~i~q~re~~~~~~k~~l~~e~~~~i~E~~--~~~~~i~~l~~el~eq~~~~~~~~~~~~~~~~~~~~~~~ 616 (809)
T KOG0247|consen 539 LSSQLNDKKEQIEQLRDEIERLKKENLTTEYSIEILEST--EYEEEIEALDQELEEQKMELQQKFSEKKKAMAKVRGILA 616 (809)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcc--hhhhhhHHHHHHHHhhhHHHHhhccchhHHHhhhccccC
Confidence 345555556666666666666655444444444443333 2333333333333333333333322221 111
Q ss_pred ---------hhHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccccccccCCCCC
Q 002662 536 ---------STTEEISVLFARQQEQLKAMQKTLEDEENYENTSVDIDLCVPDG 579 (895)
Q Consensus 536 ---------Ek~EEiee~rk~~~~qLr~LQ~~LEdeek~~s~~lelDl~p~ek 579 (895)
++..+...+..-...+|+.++..|+-+..++..-++--+.+.+|
T Consensus 617 ~t~~~~~v~~~~~~~~~~l~~~~e~l~~~~~~i~~~p~p~~~~~~~~~~e~d~ 669 (809)
T KOG0247|consen 617 NTSPECSVAAKLLELQSKLWFKDEKLKHLTAIIQTPPPPYQTPGRNPLFEKDR 669 (809)
T ss_pred CCchhhhHHHHHHHHHHHhcccHHHHHHhhcccCCCCCCcCCcccccccccch
Confidence 11111112211233456777777776666666555433333333
No 424
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=61.03 E-value=2.3e+02 Score=30.22 Aligned_cols=35 Identities=14% Similarity=0.339 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 002662 433 LDETRERLVTSDNKVRLLETQVCKEQNVSASWKKR 467 (895)
Q Consensus 433 LE~~ra~l~~lEkk~reLEkqLeEEk~~~~~lqke 467 (895)
+-..+..+.+++.+++.|..+|.+..+.+.-|++.
T Consensus 131 l~~a~~K~qemE~RIK~LhaqI~EKDAmIkVLQqr 165 (205)
T PF12240_consen 131 LHMANRKCQEMENRIKALHAQIAEKDAMIKVLQQR 165 (205)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33456677788888888888888876655554443
No 425
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=61.00 E-value=1.5e+02 Score=32.04 Aligned_cols=52 Identities=23% Similarity=0.270 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 002662 465 KKRVEELENEIKKLREELESEKAAREVAWAKVSGLELDILAATRDLDFERRR 516 (895)
Q Consensus 465 qkei~elE~EireLeeELE~ek~e~eel~d~v~~LE~ELeka~r~LE~Ek~r 516 (895)
..+.+....++..|++++++....++.+..++.+|.+..+....+||.-..+
T Consensus 150 ~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee 201 (216)
T KOG1962|consen 150 EEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEE 201 (216)
T ss_pred hhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 4444555556666666666666666666667777776666666666655444
No 426
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=60.92 E-value=4.4e+02 Score=33.39 Aligned_cols=16 Identities=19% Similarity=0.194 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 002662 490 EVAWAKVSGLELDILA 505 (895)
Q Consensus 490 eel~d~v~~LE~ELek 505 (895)
.++..+++.|..|+.+
T Consensus 669 s~LK~k~E~Lk~Evak 684 (762)
T PLN03229 669 SDLKSKIELLKLEVAK 684 (762)
T ss_pred hhHHHHHHHHHHHHHh
Confidence 3455666666666654
No 427
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=60.90 E-value=2.2e+02 Score=29.85 Aligned_cols=40 Identities=25% Similarity=0.298 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 002662 478 LREELESEKAAREVAWAKVSGLELDILAATRDLDFERRRL 517 (895)
Q Consensus 478 LeeELE~ek~e~eel~d~v~~LE~ELeka~r~LE~Ek~rL 517 (895)
|+..|+....+-+.+..-+..|..++..+...++....+.
T Consensus 86 LReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~ke~~~ 125 (182)
T PF15035_consen 86 LREQLEQARKANEALQEDLQKLTQDWERLRDELEQKEAEW 125 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555555554444444444443333
No 428
>PRK14154 heat shock protein GrpE; Provisional
Probab=60.73 E-value=1.8e+02 Score=31.21 Aligned_cols=67 Identities=15% Similarity=0.128 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 243 DFRSLQRSNTELRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKESVSISYLHQLKVLRDMLDAKQKEL 312 (895)
Q Consensus 243 ~Vr~Le~e~~eLr~qLee~~~~i~~lr~Ei~~i~er~e~El~El~e~lrkklE~QL~ELq~kLee~ekeL 312 (895)
.+..|+.++..|+.++.++.....++..++.+.+.+.++++.++...-. +.-+.+|-.=++.+++.+
T Consensus 53 ~~~~l~~el~~le~e~~elkd~~lRl~ADfeNyRKR~~kE~e~~~~~a~---e~~~~~LLpVlDnLeRAL 119 (208)
T PRK14154 53 SREKLEGQLTRMERKVDEYKTQYLRAQAEMDNLRKRIEREKADIIKFGS---KQLITDLLPVADSLIHGL 119 (208)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhHHhHHHHHH
Confidence 3566778888899999999999999999999999998888888776663 333344444444444444
No 429
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=60.50 E-value=2.4e+02 Score=30.21 Aligned_cols=66 Identities=23% Similarity=0.277 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 293 SYLHQLKVLRDMLDAKQKELAEISRISAEQKH----EMEDLNDRLSASMQSCTEANEIMKSQKVTIDELK 358 (895)
Q Consensus 293 klE~QL~ELq~kLee~ekeL~el~~~k~kLEs----EleEL~~qLee~e~~~aeL~kelkkLe~qI~ELk 358 (895)
.++..+..++..|...++++.+++...+..+. +|..|+.+-...-..+-++...+..|+.+|..++
T Consensus 140 ~Le~~~~~le~~l~~~k~~ie~vN~~RK~~Q~~~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~ 209 (221)
T PF05700_consen 140 QLEAMLKRLEKELAKLKKEIEEVNRERKRRQEEAGEELRYLEQRWKELVSKNLEIEVACEELEQEIEQLK 209 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555555555554444443333 2333344444444444444444444444444444
No 430
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=60.31 E-value=4.7e+02 Score=33.49 Aligned_cols=16 Identities=31% Similarity=0.646 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 002662 471 LENEIKKLREELESEK 486 (895)
Q Consensus 471 lE~EireLeeELE~ek 486 (895)
++..+.+.+..|+.++
T Consensus 770 ~~e~~~~~ea~leaer 785 (988)
T KOG2072|consen 770 YEEKLKQFEARLEAER 785 (988)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334445555555444
No 431
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=60.15 E-value=2.8e+02 Score=30.87 Aligned_cols=6 Identities=50% Similarity=0.495 Sum_probs=2.7
Q ss_pred cccccc
Q 002662 628 QEAEFT 633 (895)
Q Consensus 628 ~~~~~~ 633 (895)
|.+.++
T Consensus 258 ~~v~i~ 263 (327)
T TIGR02971 258 QRATIT 263 (327)
T ss_pred CEEEEE
Confidence 344443
No 432
>PRK00846 hypothetical protein; Provisional
Probab=60.03 E-value=61 Score=29.38 Aligned_cols=29 Identities=24% Similarity=0.264 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 298 LKVLRDMLDAKQKELAEISRISAEQKHEM 326 (895)
Q Consensus 298 L~ELq~kLee~ekeL~el~~~k~kLEsEl 326 (895)
+.+|+.++.=.+..+.+|+..+.+.+..|
T Consensus 15 i~~LE~rlAfQe~tIe~LN~~v~~qq~~I 43 (77)
T PRK00846 15 LVELETRLSFQEQALTELSEALADARLTG 43 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333
No 433
>PRK02793 phi X174 lysis protein; Provisional
Probab=60.02 E-value=59 Score=28.89 Aligned_cols=40 Identities=18% Similarity=0.334 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 002662 322 QKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQL 361 (895)
Q Consensus 322 LEsEleEL~~qLee~e~~~aeL~kelkkLe~qI~ELkrqL 361 (895)
++..|.+|+.++.-.+..+.+|++.+.+++.+|..|+++|
T Consensus 6 ~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l 45 (72)
T PRK02793 6 LEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHL 45 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444555555555555555555555554444333
No 434
>PRK14143 heat shock protein GrpE; Provisional
Probab=59.93 E-value=1.6e+02 Score=32.29 Aligned_cols=69 Identities=12% Similarity=0.200 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 242 DDFRSLQRSNTELRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKESVSISYLHQLKVLRDMLDAKQKELA 313 (895)
Q Consensus 242 d~Vr~Le~e~~eLr~qLee~~~~i~~lr~Ei~~i~er~e~El~El~e~lrkklE~QL~ELq~kLee~ekeL~ 313 (895)
..+..|+.++..|+.++.++....-++..+..+.+.|..+++.++.... .+.-+.+|-.=++.+++.+.
T Consensus 67 ~~~~~l~~el~~l~~e~~elkd~~lR~~AdfeN~RKR~~kE~e~~~~~a---~~~~~~~lLpV~DnLerAl~ 135 (238)
T PRK14143 67 ARLAQLEQELESLKQELEELNSQYMRIAADFDNFRKRTSREQEDLRLQL---KCNTLSEILPVVDNFERARQ 135 (238)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhHHHHHHh
Confidence 5678899999999999999999888999999999999888888877665 33334444444444444443
No 435
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=59.65 E-value=3.7e+02 Score=32.03 Aligned_cols=238 Identities=13% Similarity=0.038 Sum_probs=0.0
Q ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 243 DFRSLQRS--NTELRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKESVSISYLHQLKVLRDMLDAKQKELAEISRISA 320 (895)
Q Consensus 243 ~Vr~Le~e--~~eLr~qLee~~~~i~~lr~Ei~~i~er~e~El~El~e~lrkklE~QL~ELq~kLee~ekeL~el~~~k~ 320 (895)
+|..|+.- ...|...|..+.+++.....-+...-..+.+.+-.+..++ +.+-.++.=....|....+++.++..++.
T Consensus 198 Rve~le~~Sal~~lq~~L~la~~~~~~~~e~~i~~~~~f~~r~~~~E~e~-rn~~E~~~lA~r~l~~~kKe~de~k~~~~ 276 (554)
T KOG4677|consen 198 RVESLERFSALRSLQDKLQLAEEAVSMHDENVITAVLIFLKRTLSKEIEF-RNELEVRQLALRHLIHFKKEIDEQKLLLD 276 (554)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred H-----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 002662 321 E-----------------------------QKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRRVD 371 (895)
Q Consensus 321 k-----------------------------LEsEleEL~~qLee~e~~~aeL~kelkkLe~qI~ELkrqLEeEr~~~~EE 371 (895)
. +..+++++.-.+.-....++.+..++-.|..+|.+++.+.-+...+..++
T Consensus 277 l~~~l~~keeL~~s~~~e~~i~qs~~kstas~~E~ee~rve~~~s~ed~~~~q~q~~~Lrs~~~d~EAq~r~l~s~~~~q 356 (554)
T KOG4677|consen 277 LFRFLDRKEELALSHYREHLIIQSPDKSTASRKEFEETRVELPFSAEDSAHIQDQYTLLRSQIIDIEAQDRHLESAGQTQ 356 (554)
T ss_pred HHHHhhhHHHHHHHHHHHhhccCCCCcchhHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Q 002662 372 RENAEADLKAAVQKSQLETQEKLKRLSDAASRRELEQQEVINKLQIAEKQSSLQVESLKLKLDE--TRERLVTSDNKVRL 449 (895)
Q Consensus 372 lEe~~~eLk~qLqkl~~El~eerkk~eee~~~~~eElee~l~KLeE~EKk~r~elEdLk~kLE~--~ra~l~~lEkk~re 449 (895)
+ .....-++.+-..-..+.........+.......+-..-.+++-+......++..+..+|.. ...+..+++.....
T Consensus 357 ~-~~~h~~ka~~~~~~~~l~~~~ec~~~e~e~~~~~~~r~~~~~qski~dk~~el~kl~~~l~~r~~~~s~~~l~~~~~q 435 (554)
T KOG4677|consen 357 I-FRKHPRKASILNMPLVLTLFYECFYHETEAEGTFSSRVNLKKQSKIPDKQYELTKLAARLKLRAWNDSVDALFTTKNQ 435 (554)
T ss_pred H-HHhhhHhhhhhhchHHHHHHHHHHHHHHHHhhhhhhhccchhhccCcchHHHHHHHHHHHHHHhhhhhHHHHhchhHH
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 002662 450 LETQVCKEQNVSASWKKRVEELENEIKKLREEL 482 (895)
Q Consensus 450 LEkqLeEEk~~~~~lqkei~elE~EireLeeEL 482 (895)
|--.+...+.....+-.....+-..+..|++.+
T Consensus 436 Lt~tl~qkq~~le~v~~~~~~ln~~lerLq~~~ 468 (554)
T KOG4677|consen 436 LTYTLKQKQIGLERVVEILHKLNAPLERLQEYV 468 (554)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHh
No 436
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=59.60 E-value=2.5e+02 Score=30.10 Aligned_cols=44 Identities=16% Similarity=0.144 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 315 ISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELK 358 (895)
Q Consensus 315 l~~~k~kLEsEleEL~~qLee~e~~~aeL~kelkkLe~qI~ELk 358 (895)
....+..|+..-.++-...-+.+..+..|..++..++.+..+++
T Consensus 173 ~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~~~~~~ 216 (221)
T PF05700_consen 173 AGEELRYLEQRWKELVSKNLEIEVACEELEQEIEQLKRKAAELK 216 (221)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444555555555555555555555555555555555544444
No 437
>PRK00846 hypothetical protein; Provisional
Probab=59.35 E-value=82 Score=28.57 Aligned_cols=36 Identities=25% Similarity=0.269 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 323 KHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELK 358 (895)
Q Consensus 323 EsEleEL~~qLee~e~~~aeL~kelkkLe~qI~ELk 358 (895)
+..|.+|+.++.-.+..+.+|++.+.++...|..|+
T Consensus 12 e~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~ 47 (77)
T PRK00846 12 EARLVELETRLSFQEQALTELSEALADARLTGARNA 47 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444
No 438
>PLN03188 kinesin-12 family protein; Provisional
Probab=59.34 E-value=5.8e+02 Score=34.28 Aligned_cols=25 Identities=8% Similarity=0.105 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 002662 436 TRERLVTSDNKVRLLETQVCKEQNV 460 (895)
Q Consensus 436 ~ra~l~~lEkk~reLEkqLeEEk~~ 460 (895)
+++....|-.+-+.+..-+.+.+.+
T Consensus 1119 l~ek~~~ll~~hr~i~egi~dvkka 1143 (1320)
T PLN03188 1119 LEEKHIQLLARHRRIQEGIDDVKKA 1143 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444554433
No 439
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=59.23 E-value=3e+02 Score=30.95 Aligned_cols=14 Identities=50% Similarity=0.484 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHH
Q 002662 379 LKAAVQKSQLETQE 392 (895)
Q Consensus 379 Lk~qLqkl~~El~e 392 (895)
++.++.|+..+.++
T Consensus 340 IkqavsKLk~et~~ 353 (384)
T KOG0972|consen 340 IKQAVSKLKEETQT 353 (384)
T ss_pred HHHHHHHHHHHHHh
Confidence 34555555555444
No 440
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=59.07 E-value=2e+02 Score=28.91 Aligned_cols=9 Identities=33% Similarity=0.309 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 002662 305 LDAKQKELA 313 (895)
Q Consensus 305 Lee~ekeL~ 313 (895)
+++.++...
T Consensus 62 l~~Ae~~~~ 70 (156)
T CHL00118 62 LTKASEILA 70 (156)
T ss_pred HHHHHHHHH
Confidence 333333333
No 441
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=59.02 E-value=6.7 Score=37.09 Aligned_cols=65 Identities=15% Similarity=0.242 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 273 RVVVERHEKEMKEMKESVSISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEAN 344 (895)
Q Consensus 273 ~~i~er~e~El~El~e~lrkklE~QL~ELq~kLee~ekeL~el~~~k~kLEsEleEL~~qLee~e~~~aeL~ 344 (895)
...+...+.|+.+|...+ |.+.+..+...++....+..+...|+.++.+....|..+..++..|.
T Consensus 14 e~~~~~ie~ElEeLTasL-------FeEAN~MVa~ar~e~~~~e~k~~~le~~l~e~~~~l~~lq~qL~~LK 78 (100)
T PF06428_consen 14 EQEKEQIESELEELTASL-------FEEANKMVADARRERAALEEKNEQLEKQLKEKEALLESLQAQLKELK 78 (100)
T ss_dssp HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTHHCHCCCHCTSSSSHHH
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555 55656666666665555555555555555555554444444444333
No 442
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=58.88 E-value=2.9e+02 Score=30.69 Aligned_cols=6 Identities=17% Similarity=0.169 Sum_probs=2.4
Q ss_pred cccccc
Q 002662 628 QEAEFT 633 (895)
Q Consensus 628 ~~~~~~ 633 (895)
|.++++
T Consensus 259 ~~v~v~ 264 (334)
T TIGR00998 259 QPVTIR 264 (334)
T ss_pred CEEEEE
Confidence 344443
No 443
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=58.73 E-value=2.2e+02 Score=29.24 Aligned_cols=50 Identities=20% Similarity=0.347 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 436 TRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESE 485 (895)
Q Consensus 436 ~ra~l~~lEkk~reLEkqLeEEk~~~~~lqkei~elE~EireLeeELE~e 485 (895)
++..-..|+++++.|...++.-.....+..-.+.=+...+..+...|+..
T Consensus 103 Lr~rRD~LErrl~~l~~tierAE~l~sqi~vvl~yL~~dl~~v~~~~e~~ 152 (159)
T PF05384_consen 103 LRERRDELERRLRNLEETIERAENLVSQIGVVLNYLSGDLQQVSEQIEDA 152 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 34444444455555555554444444444444444444444444444443
No 444
>PRK14139 heat shock protein GrpE; Provisional
Probab=58.66 E-value=1.9e+02 Score=30.48 Aligned_cols=68 Identities=15% Similarity=0.139 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 242 DDFRSLQRSNTELRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKESVSISYLHQLKVLRDMLDAKQKEL 312 (895)
Q Consensus 242 d~Vr~Le~e~~eLr~qLee~~~~i~~lr~Ei~~i~er~e~El~El~e~lrkklE~QL~ELq~kLee~ekeL 312 (895)
..+..|..++..|+.++.++.....++..+..+.+.|.++++.++..--..++ +.+|-.=++.+++-+
T Consensus 32 ~e~~~l~~~l~~le~e~~elkd~~lR~~AefeN~rKR~~kE~e~~~~~a~~~~---~~~LLpv~DnLerAl 99 (185)
T PRK14139 32 DAAPALEAELAEAEAKAAELQDSFLRAKAETENVRRRAQEDVAKAHKFAIESF---AESLLPVKDSLEAAL 99 (185)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhhHHhHHHHHH
Confidence 55778888899999999999999999999999999998888888876663333 333333444444433
No 445
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=58.35 E-value=1.6e+02 Score=27.47 Aligned_cols=47 Identities=23% Similarity=0.264 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 298 LKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEAN 344 (895)
Q Consensus 298 L~ELq~kLee~ekeL~el~~~k~kLEsEleEL~~qLee~e~~~aeL~ 344 (895)
++++...+..+...+..+...+.++..++......+-++......+.
T Consensus 12 ~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~ 58 (96)
T PF08647_consen 12 FKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALD 58 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 33333333334444444444444444444333333333333333333
No 446
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=58.24 E-value=80 Score=36.00 Aligned_cols=58 Identities=10% Similarity=0.115 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 284 KEMKESVSISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCT 341 (895)
Q Consensus 284 ~El~e~lrkklE~QL~ELq~kLee~ekeL~el~~~k~kLEsEleEL~~qLee~e~~~a 341 (895)
+..+++++.+.+..+..+++..+.+.+.-+++..-+++|+.+++.|+.++..+..+++
T Consensus 213 sa~~eklR~r~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niD 270 (365)
T KOG2391|consen 213 SAVREKLRRRREEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNID 270 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhH
Confidence 3344445555555555555555555555555555555555555544444444444333
No 447
>KOG2150 consensus CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=58.17 E-value=4.3e+02 Score=32.38 Aligned_cols=147 Identities=16% Similarity=0.214 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 002662 386 SQLETQEKLKRLSDAASRRELEQQEVINKLQIAEKQSSLQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWK 465 (895)
Q Consensus 386 l~~El~eerkk~eee~~~~~eElee~l~KLeE~EKk~r~elEdLk~kLE~~ra~l~~lEkk~reLEkqLeEEk~~~~~lq 465 (895)
....+++++.+..--....++-..+..+|+...- --.+-+.+..+|.+.- |+++.|.-++.-|.+ .
T Consensus 2 ~~RKLq~eIdr~lkKv~Egve~Fd~i~ek~~~~~--n~sqkeK~e~DLKkEI-------KKLQRlRdQIKtW~s-----s 67 (575)
T KOG2150|consen 2 AKRKLQQEIDRCLKKVDEGVEIFDEIYEKLHSAN--NVSQKEKLESDLKKEI-------KKLQRLRDQIKTWQS-----S 67 (575)
T ss_pred chhHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcC--ChhHHHHHHHHHHHHH-------HHHHHHHHHHHhhhc-----c
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------HHHHhhHHHHHHHHHHHHH
Q 002662 466 KRVEELENEIKKLREELESEKAAREVAWAKVSGLELDI-----------------------LAATRDLDFERRRLKAARE 522 (895)
Q Consensus 466 kei~elE~EireLeeELE~ek~e~eel~d~v~~LE~EL-----------------------eka~r~LE~Ek~rLq~~rE 522 (895)
..|+.. ..|-..++-++..+++-...++++ .....=+-....+|..+.+
T Consensus 68 ~dIKDK--------~~L~d~RrlIE~~MErfK~vEke~KtKa~SkegL~~~~klDPkEkek~d~~~wi~~~ideLe~q~d 139 (575)
T KOG2150|consen 68 SDIKDK--------DSLLDNRRLIEQRMERFKAVEKEMKTKAFSKEGLSAAEKLDPKEKEKRDTMDWISNQIDELERQVD 139 (575)
T ss_pred cccccH--------HHHHHHHHHHHHHHHHHHHHHHHhhccccchhhccccccCChHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 002662 523 RIMLRETQLRAFYSTTEEISVLFARQQEQLKAMQKTLEDEE 563 (895)
Q Consensus 523 rL~~~eqqlkaeiEk~EEiee~rk~~~~qLr~LQ~~LEdee 563 (895)
+++. ++++.++++.+ -|+..|.-..+.|++.+
T Consensus 140 ~~ea--~~~e~~~erh~-------~H~~~lEliLr~L~N~E 171 (575)
T KOG2150|consen 140 SFEA--EELERFIERHR-------WHQQKLELILRLLDNDE 171 (575)
T ss_pred HHHH--HHHHHHHHHHH-------HHHHHHHHHHHHhhccc
No 448
>PTZ00121 MAEBL; Provisional
Probab=58.13 E-value=6.5e+02 Score=34.45 Aligned_cols=12 Identities=42% Similarity=0.523 Sum_probs=7.4
Q ss_pred CCcCcccccccc
Q 002662 606 GEASTTEKHDCD 617 (895)
Q Consensus 606 ~~~~~~~~~~~~ 617 (895)
+++...++|.-.
T Consensus 1844 ~~~~~~~~~~~~ 1855 (2084)
T PTZ00121 1844 EEADAFEKHKFN 1855 (2084)
T ss_pred hhhhHhhhhccc
Confidence 566666777543
No 449
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=58.10 E-value=1.8e+02 Score=35.38 Aligned_cols=59 Identities=29% Similarity=0.271 Sum_probs=47.0
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 002662 457 EQNVSASWKKRVEELENEIKKLREELESEKAAREVAWAKVSGLELDILAATRDLDFERR 515 (895)
Q Consensus 457 Ek~~~~~lqkei~elE~EireLeeELE~ek~e~eel~d~v~~LE~ELeka~r~LE~Ek~ 515 (895)
.......|-.++++|..+-.-|+-|++..+.+..++.++++.|+.||.+++..+..-++
T Consensus 320 LNiVKNDLIakVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k~ea~~ar~ 378 (832)
T KOG2077|consen 320 LNIVKNDLIAKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAKAEAEDARQ 378 (832)
T ss_pred HHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566788888888888899999999999999999999999999887766665544
No 450
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.76 E-value=3.8e+02 Score=31.57 Aligned_cols=33 Identities=15% Similarity=0.292 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 316 SRISAEQKHEMEDLNDRLSASMQSCTEANEIMK 348 (895)
Q Consensus 316 ~~~k~kLEsEleEL~~qLee~e~~~aeL~kelk 348 (895)
..-+.-|+++|++|...+..++..+.++.+.+.
T Consensus 154 relv~pmekeI~elk~kl~~aE~~i~El~k~~~ 186 (542)
T KOG0993|consen 154 RELVTPMEKEINELKKKLAKAEQRIDELSKAKH 186 (542)
T ss_pred HHHHhhHHHHHHHHHHHHHhHHHHHHHHHhhhc
Confidence 333444555555555555555555555554443
No 451
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=57.27 E-value=3.1e+02 Score=30.51 Aligned_cols=166 Identities=15% Similarity=0.153 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhHHHHHHHHH
Q 002662 391 QEKLKRLSDAASRRELEQQEVINKLQIAEKQSSLQVESLKLKLDETRERLVTSD-NKVRLLETQVCKEQNVSASWKKRVE 469 (895)
Q Consensus 391 ~eerkk~eee~~~~~eElee~l~KLeE~EKk~r~elEdLk~kLE~~ra~l~~lE-kk~reLEkqLeEEk~~~~~lqkei~ 469 (895)
.+++..++ ..+++..+++++-.....-+...++++-...+++..-.-..++ .++++|+++.++++.....+...-+
T Consensus 279 aeerrqie---terlrqeeeelnikk~e~~kikqe~ddkdk~~ed~e~kkrqlerqekqeleqmaeeekkr~eeaeerqr 355 (445)
T KOG2891|consen 279 AEERRQIE---TERLRQEEEELNIKKAEACKIKQEFDDKDKHLEDAEIKKRQLERQEKQELEQMAEEEKKREEEAEERQR 355 (445)
T ss_pred HHHHhhhh---HHHHhhhHhhhhhhHHHhhchhhhcCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 002662 470 ELENEIKKLREELESEKAAREVAWAKVSGLELDILAATRDLDFERRRLKAARERIMLRETQLRAFYSTTEEISVLFARQQ 549 (895)
Q Consensus 470 elE~EireLeeELE~ek~e~eel~d~v~~LE~ELeka~r~LE~Ek~rLq~~rErL~~~eqqlkaeiEk~EEiee~rk~~~ 549 (895)
+-+.+-.+++ +++.+.........---...+.-..+.+|-+...++|+..++.++..-++-.+.+....-.+
T Consensus 356 aeekeq~eae--------e~~ra~kr~egvkllkf~fekieareerrkqkeeeklk~e~qkikeleek~~eeedal~~al 427 (445)
T KOG2891|consen 356 AEEKEQKEAE--------ELERARKREEGVKLLKFEFEKIEAREERRKQKEEEKLKAEEQKIKELEEKIKEEEDALLLAL 427 (445)
T ss_pred hHHHHHHHHH--------HHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHhhhhhhhhhhcc
Q 002662 550 EQLKAMQKTLEDEENYEN 567 (895)
Q Consensus 550 ~qLr~LQ~~LEdeek~~s 567 (895)
..|.+....-+=.++.+.
T Consensus 428 l~~qeirl~~~lkek~ka 445 (445)
T KOG2891|consen 428 LNLQEIRLIAELKEKAKA 445 (445)
T ss_pred HhhHHHHHHHHHHHhhcC
No 452
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=56.49 E-value=1.2e+02 Score=36.06 Aligned_cols=18 Identities=17% Similarity=0.239 Sum_probs=9.5
Q ss_pred cChhhHhhcCCCCccccc
Q 002662 813 VTPELKVQFGGAVDNDLH 830 (895)
Q Consensus 813 ~~~~~~~~~~~~~~~~~~ 830 (895)
++.=|++.++.+.|-.|-
T Consensus 427 ~adW~~krygqsFdAVyV 444 (472)
T TIGR03752 427 VADWVNKRYGQSFDAVYV 444 (472)
T ss_pred HHHHHHHHhhccccEEEe
Confidence 444555555555554443
No 453
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=56.40 E-value=91 Score=35.62 Aligned_cols=42 Identities=17% Similarity=0.192 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 317 RISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELK 358 (895)
Q Consensus 317 ~~k~kLEsEleEL~~qLee~e~~~aeL~kelkkLe~qI~ELk 358 (895)
..-.+|+........+++++........+.+++.+..++++.
T Consensus 11 ~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~ 52 (330)
T PF07851_consen 11 KEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELK 52 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333444444444444444444443333333
No 454
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=56.11 E-value=1e+02 Score=26.33 Aligned_cols=35 Identities=9% Similarity=0.219 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 304 MLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQ 338 (895)
Q Consensus 304 kLee~ekeL~el~~~k~kLEsEleEL~~qLee~e~ 338 (895)
+++.+...+..|..++.+|..++..+...+..+..
T Consensus 4 kid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~ 38 (56)
T PF04728_consen 4 KIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKE 38 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555666666666666666655544444
No 455
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=55.60 E-value=3.3e+02 Score=30.32 Aligned_cols=141 Identities=13% Similarity=0.156 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 276 VERHEKEMKEMKESVSIS------YLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKS 349 (895)
Q Consensus 276 ~er~e~El~El~e~lrkk------lE~QL~ELq~kLee~ekeL~el~~~k~kLEsEleEL~~qLee~e~~~aeL~kelkk 349 (895)
...+...+..+....... +..=|.+.-......+..+-.+...+...+.++.....+.+.++.....+......
T Consensus 150 ~~~~~~~~~~~~~~Y~~~p~Kg~ka~evL~~fl~~~~~~~~~ilq~d~~L~~~ek~~~~~~~k~e~~e~e~~~l~e~~~~ 229 (297)
T PF02841_consen 150 YQLFLKELDELEKEYEQEPGKGVKAEEVLQEFLQSKESMENSILQADQQLTEKEKEIEEEQAKAEAAEKEKEKLEEKQKE 229 (297)
T ss_dssp HHHHHHHHHHHHHHHHHSS---TTHHHHHHHHHHHCHHHHHHHHHH-TTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 002662 350 QKVTIDELKTQLDEERNLRRVDRENAEADLKAAVQKSQLETQEKLKRLSDA-ASRRELEQQEVINKLQ 416 (895)
Q Consensus 350 Le~qI~ELkrqLEeEr~~~~EElEe~~~eLk~qLqkl~~El~eerkk~eee-~~~~~eElee~l~KLe 416 (895)
.+..+.+-++.+++....+.+.++.....+.....++......+..++..+ .......++..+..|+
T Consensus 230 ~~~~le~~~~~~ee~~~~L~ekme~e~~~~~~e~e~~l~~k~~eq~~~l~e~~~~~~~~l~~ei~~L~ 297 (297)
T PF02841_consen 230 QEQMLEQQERSYEEHIKQLKEKMEEEREQLLQEQERLLEQKLQEQEELLKEGFQEEAEKLQKEIQDLQ 297 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
No 456
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=55.43 E-value=4.1e+02 Score=31.28 Aligned_cols=105 Identities=12% Similarity=0.123 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 002662 447 VRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAREVAWAKVSGLELDILAATRDLDFERRRLKAARERIML 526 (895)
Q Consensus 447 ~reLEkqLeEEk~~~~~lqkei~elE~EireLeeELE~ek~e~eel~d~v~~LE~ELeka~r~LE~Ek~rLq~~rErL~~ 526 (895)
+..+...+.+.+.....++..++.+..+ +..++.-+...+++..-+...||..+......--.|...|+.++.-.+.
T Consensus 214 l~~~~~el~eik~~~~~L~~~~e~Lk~~---~~~e~~~~~~~LqEEr~R~erLEeqlNd~~elHq~Ei~~LKqeLa~~EE 290 (395)
T PF10267_consen 214 LQKILEELREIKESQSRLEESIEKLKEQ---YQREYQFILEALQEERYRYERLEEQLNDLTELHQNEIYNLKQELASMEE 290 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHh
Q 002662 527 RETQLRAFYSTTEEISVLFARQQEQLKAMQ 556 (895)
Q Consensus 527 ~eqqlkaeiEk~EEiee~rk~~~~qLr~LQ 556 (895)
++.=+- ++++.+|.+.....+.++..|+
T Consensus 291 K~~Yqs--~eRaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 291 KMAYQS--YERARDIWEVMESCQTRISKLE 318 (395)
T ss_pred HHHHHH--HHHHhHHHHHHHHHHHHHHHHH
No 457
>PF09727 CortBP2: Cortactin-binding protein-2; InterPro: IPR019131 This entry represents a N-terminal domain found in cortactin-binding protein 2 and in filamin A interacting protein 1 (Filip1). In addition to being a positional candidate for autism, cortactin-binding protein 2 is expressed at highest levels in the brain in humans. Towards the C-terminal end of this protein are a series of proline-rich regions which are likely to be the points of interaction with the SH3 domain of cortactin. The human protein has six associated ankyrin repeat domains (IPR002110 from INTERPRO) towards the C terminus of the protein which act as protein-protein interaction domains []. Filip1 controls the start of neocortical cell migration from the ventricular zone by acting through a filamin-A/F-actin axis. It may be able to induce the degradation of Filamin A [, ].
Probab=55.40 E-value=2.8e+02 Score=29.41 Aligned_cols=104 Identities=22% Similarity=0.246 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 421 QSSLQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEE----LENEIKKLREELESEKAAREVAWAKV 496 (895)
Q Consensus 421 k~r~elEdLk~kLE~~ra~l~~lEkk~reLEkqLeEEk~~~~~lqkei~e----lE~EireLeeELE~ek~e~eel~d~v 496 (895)
.+..-++.-+.-..+...++...+++.+.+-..+++++.+.+....+.++ ++.+-..|...|+.++. ..
T Consensus 85 ~Le~l~~~qk~~q~Rm~~qL~~aE~rhrr~i~eLe~EKrkh~~~~aqgDD~t~lLEkEReRLkq~lE~Ek~-------~~ 157 (192)
T PF09727_consen 85 ELEKLMEHQKKMQRRMLEQLAAAEKRHRRTIQELEEEKRKHAEDMAQGDDFTNLLEKERERLKQQLEQEKA-------QQ 157 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHH-------HH
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 002662 497 SGLELDILAATRDLDFERRRLKAARERIMLRETQL 531 (895)
Q Consensus 497 ~~LE~ELeka~r~LE~Ek~rLq~~rErL~~~eqql 531 (895)
..+++++.+....+..|+.+++.-..-|-..-+++
T Consensus 158 ~~~EkE~~K~~~~l~eE~~k~K~~~l~Lv~E~k~~ 192 (192)
T PF09727_consen 158 KKLEKEHKKLVSQLEEERTKLKSFVLMLVKERKRM 192 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 458
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=55.29 E-value=1.7e+02 Score=32.10 Aligned_cols=81 Identities=21% Similarity=0.289 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------------------------
Q 002662 420 KQSSLQVESLKLKLDETRERLVTSDNKVRLLET----------------------------------------------- 452 (895)
Q Consensus 420 Kk~r~elEdLk~kLE~~ra~l~~lEkk~reLEk----------------------------------------------- 452 (895)
..++.++..+..++++.+..+..||..+..++.
T Consensus 2 ~~lq~~l~~l~~~~~~~~~L~~kLE~DL~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~sp~ss~~~~~~~~siL 81 (248)
T PF08172_consen 2 EELQKELSELEAKLEEQKELNAKLENDLAKVQASSSASRSFNDGASMASGATRQIPNSGRSGSLSPTSSIIGGGGDSSIL 81 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCcccccccchhhccCccccCCCCCCccCCCCCCcccHH
Q ss_pred -----HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 453 -----QVCKEQNVSASWKKRVEELENEIKKLREELESEKAAREVAWAKVSGLE 500 (895)
Q Consensus 453 -----qLeEEk~~~~~lqkei~elE~EireLeeELE~ek~e~eel~d~v~~LE 500 (895)
|-+..+....+|+.+++....++..|+.|+.++++.--+|-++++=|+
T Consensus 82 pIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylq 134 (248)
T PF08172_consen 82 PIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYLQ 134 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 459
>PF15294 Leu_zip: Leucine zipper
Probab=55.29 E-value=3.4e+02 Score=30.38 Aligned_cols=210 Identities=16% Similarity=0.158 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHH-----HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Q 002662 244 FRSLQRSNTELRKQLES-----QVLEIDKLRNENRVVVERHEKEMKEMKESVSISYLHQLKVLRDMLDAKQKELAE---- 314 (895)
Q Consensus 244 Vr~Le~e~~eLr~qLee-----~~~~i~~lr~Ei~~i~er~e~El~El~e~lrkklE~QL~ELq~kLee~ekeL~e---- 314 (895)
+......+..|..-+.. +....-.-..-++.+....++-.-.+.--+..--..++-+.-++.+..+-....
T Consensus 32 ~~EV~~~ldgL~~~v~~~vesEL~N~~htn~lllrql~~qAek~~lkl~~diselEn~eLLe~i~~~E~~~~~~~~~~~~ 111 (278)
T PF15294_consen 32 SDEVTEMLDGLQVVVKSEVESELINTSHTNVLLLRQLFSQAEKWYLKLQTDISELENRELLEQIAEFEKQEFTSSFKPNQ 111 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhhcccCCccc
Q ss_pred ------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH--------
Q 002662 315 ------------------ISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLR-------- 368 (895)
Q Consensus 315 ------------------l~~~k~kLEsEleEL~~qLee~e~~~aeL~kelkkLe~qI~ELkrqLEeEr~~~-------- 368 (895)
+...+..|+.++..|..+|...+.....+-++..+++.+|.+++. +......+
T Consensus 112 ~~~~~KL~pl~e~g~~~ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~-~~~~~~~k~~~~~~~q 190 (278)
T PF15294_consen 112 ETSKPKLEPLNESGGSELLNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQD-EQGDQKGKKDLSFKAQ 190 (278)
T ss_pred cccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhcccccccccc
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 369 -RVDRENAEADLKAAVQKSQLETQEKLKRLSDAASRRELEQQEVINKLQIAEKQSSLQVESLKLKLDETRERLVTSDNKV 447 (895)
Q Consensus 369 -~EElEe~~~eLk~qLqkl~~El~eerkk~eee~~~~~eElee~l~KLeE~EKk~r~elEdLk~kLE~~ra~l~~lEkk~ 447 (895)
...+++....++.++++.-.......+.+.+......-++-.....|...++.+..-+-. +.-+...+.-+..--..+
T Consensus 191 ~l~dLE~k~a~lK~e~ek~~~d~~~~~k~L~e~L~~~KhelL~~QeqL~~aekeLekKfqq-T~ay~NMk~~ltkKn~Qi 269 (278)
T PF15294_consen 191 DLSDLENKMAALKSELEKALQDKESQQKALEETLQSCKHELLRVQEQLSLAEKELEKKFQQ-TAAYRNMKEILTKKNEQI 269 (278)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhcchhhHHHHhCc-cHHHHHhHHHHHhccHHH
Q ss_pred HHHHHHHH
Q 002662 448 RLLETQVC 455 (895)
Q Consensus 448 reLEkqLe 455 (895)
++|.+++.
T Consensus 270 KeLRkrl~ 277 (278)
T PF15294_consen 270 KELRKRLA 277 (278)
T ss_pred HHHHHHhc
No 460
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=55.10 E-value=2.2e+02 Score=28.02 Aligned_cols=95 Identities=14% Similarity=0.234 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------------------
Q 002662 280 EKEMKEMKESVSISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEME-------------------------------- 327 (895)
Q Consensus 280 e~El~El~e~lrkklE~QL~ELq~kLee~ekeL~el~~~k~kLEsEle-------------------------------- 327 (895)
+.++..+...+ .+|..++..+...+......+.++...+..++.--.
T Consensus 5 ~~~l~~l~~~~-~~l~~~~~~l~~~~~~l~~~~~e~~~~~e~l~~l~~~~~~~e~lvplg~~~yv~~~v~~~~kV~v~lG 83 (140)
T PRK03947 5 EQELEELAAQL-QALQAQIEALQQQLEELQASINELDTAKETLEELKSKGEGKETLVPIGAGSFVKAKVKDKDKVIVSLG 83 (140)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCeEEEEcCCCcEEEEEecCCCeEEEEcC
Q ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 002662 328 -------DLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRRVDRENA 375 (895)
Q Consensus 328 -------EL~~qLee~e~~~aeL~kelkkLe~qI~ELkrqLEeEr~~~~EElEe~ 375 (895)
.+...+.-++.++..+.+.+..++..+..+..+++.=.....+...+.
T Consensus 84 ~g~~vE~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~ 138 (140)
T PRK03947 84 AGYSAEKDLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQQEA 138 (140)
T ss_pred CCEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 461
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=54.57 E-value=5.2e+02 Score=32.27 Aligned_cols=130 Identities=22% Similarity=0.196 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 002662 401 ASRRELEQQEVINKLQIAEKQSSLQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLRE 480 (895)
Q Consensus 401 ~~~~~eElee~l~KLeE~EKk~r~elEdLk~kLE~~ra~l~~lEkk~reLEkqLeEEk~~~~~lqkei~elE~EireLee 480 (895)
...+.+......+|++.+..+.-.+-..|+.+-..+...+..-++.....++++... .+++.++.+++-++-+.
T Consensus 248 ~~KQ~rk~meEreK~R~erEr~~leeKrlk~~~~~eek~~~keE~~kekee~Klekd------~KKqqkekEkeEKrrKd 321 (811)
T KOG4364|consen 248 LLKQLRKNMEEREKERKERERQVLEEKRLKEKEQKEEKKAIKEENNKEKEETKLEKD------IKKQQKEKEKEEKRRKD 321 (811)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhhhh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHhhhhH
Q 002662 481 ELESEKAAREVAWAKVSGLELDILAATRDLDFERRRLKA-ARERIMLRETQLRAFYSTT 538 (895)
Q Consensus 481 ELE~ek~e~eel~d~v~~LE~ELeka~r~LE~Ek~rLq~-~rErL~~~eqqlkaeiEk~ 538 (895)
+-+.+ ..++...+....+.+.++..+..+.++..+.. .++..+.+.+...+.|.+|
T Consensus 322 E~Ek~--kKqeek~KR~k~~Erkee~~rk~deerkK~e~ke~ea~E~rkkr~~aei~Kf 378 (811)
T KOG4364|consen 322 EQEKL--KKQEEKQKRAKIMERKEEKSRKSDEERKKLESKEVEAQELRKKRHEAEIGKF 378 (811)
T ss_pred HHHHH--HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhh
No 462
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=54.46 E-value=64 Score=27.42 Aligned_cols=47 Identities=21% Similarity=0.320 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 002662 467 RVEELENEIKKLREELESEKAAREVAWAKVSGLELDILAATRDLDFE 513 (895)
Q Consensus 467 ei~elE~EireLeeELE~ek~e~eel~d~v~~LE~ELeka~r~LE~E 513 (895)
++.+++.++-.+...+..++++.+++.+.+..++.-+......||..
T Consensus 1 Ri~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ll~lYE~V 47 (55)
T PF05377_consen 1 RIDELENELPRIESSINTVKKENEEISESVEKIEENVKDLLSLYEVV 47 (55)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 463
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=54.37 E-value=5.5e+02 Score=32.50 Aligned_cols=335 Identities=13% Similarity=0.079 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H
Q 002662 249 RSNTELRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKESVSISYLHQLKVLRDMLDAKQKELAEISRISAEQKH---E 325 (895)
Q Consensus 249 ~e~~eLr~qLee~~~~i~~lr~Ei~~i~er~e~El~El~e~lrkklE~QL~ELq~kLee~ekeL~el~~~k~kLEs---E 325 (895)
.++..|+++.........-+-..+-.+...+.+.-..+...- ....+.=.+-.+.-+.+++.++.+.+.+|.. .
T Consensus 616 ~Kv~TL~~~~k~~~~~~~~~~~~i~~~q~e~~klqeq~~Al~---~i~~~~fa~ID~~Sa~rqIael~~~lE~L~~t~~~ 692 (1104)
T COG4913 616 AKVETLRETVKAMLSREDFYMIKIMRQQGEYIKLQEQANALA---HIQALNFASIDLPSAQRQIAELQARLERLTHTQSD 692 (1104)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH---HHHhcchhhcchhhHHHHHHHHHHHHHHhcCChhH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHH
Q 002662 326 MEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRRVDRENAEADLKAAVQK------SQLETQEKLKRLSD 399 (895)
Q Consensus 326 leEL~~qLee~e~~~aeL~kelkkLe~qI~ELkrqLEeEr~~~~EElEe~~~eLk~qLqk------l~~El~eerkk~ee 399 (895)
+.-+...+.++..+...++...+..--+...++.+|+-.......-.-=.....-.+++. .+.-..+.......
T Consensus 693 ~~~~~~~l~aaQT~~~vler~~~~~~~e~~~~k~~lkrA~~~~~k~~si~~~~~t~~~q~~~~a~f~q~a~~~h~~~vd~ 772 (1104)
T COG4913 693 IAIAKAALDAAQTRQKVLERQYQQEVTECAGLKKDLKRAAMLSRKVHSIAKQGMTGALQALGAAHFPQVAPEQHDDIVDI 772 (1104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhhhhhChHhhhhhhhH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 002662 400 AASRRELEQQEVINKLQIAEKQSSLQVESLKLKLDET-RERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKL 478 (895)
Q Consensus 400 e~~~~~eElee~l~KLeE~EKk~r~elEdLk~kLE~~-ra~l~~lEkk~reLEkqLeEEk~~~~~lqkei~elE~EireL 478 (895)
...+.-+.|...+.......++++.++-......-.+ .+..+++..+...+=.-+...+... .-.+-+..++.+.|
T Consensus 773 ~~~~~r~~LqkrIDa~na~Lrrl~~~Iig~m~~~k~~~~a~~~e~~ael~~ipey~~rL~~L~---~D~Lpef~arF~~l 849 (1104)
T COG4913 773 ERIEHRRQLQKRIDAVNARLRRLREEIIGRMSDAKKEDTAALSEVGAELDDIPEYLARLQTLT---EDALPEFLARFQEL 849 (1104)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhcchhhhhhhccCHhHHHHHHHHHHhhh---hhhHHHHHHHHHHH
Q ss_pred HHH---------HHHHHHHHHHHHHHHHHHHHHHHH---------------------HHhhHHHHHHHHHHHHHHHHHHH
Q 002662 479 REE---------LESEKAAREVAWAKVSGLELDILA---------------------ATRDLDFERRRLKAARERIMLRE 528 (895)
Q Consensus 479 eeE---------LE~ek~e~eel~d~v~~LE~ELek---------------------a~r~LE~Ek~rLq~~rErL~~~e 528 (895)
-.+ +..+..++..+.+.++.+..-|.. .++.+.....-+...+.-=-.-+
T Consensus 850 lN~~S~~~v~q~~~~L~~er~~IeERIe~IN~SL~~vdfn~gRylhIdi~kQp~p~~~~R~fqq~lra~tsg~~~g~d~E 929 (1104)
T COG4913 850 LNRSSDDGVTQLLSHLDHERALIEERIEAINDSLRRVDFNSGRYLHIDIAKQPVPHDSMRTFQQALRALTSGRFVGDDGE 929 (1104)
T ss_pred hhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCceEEeecccCCCccHHHHHHHHHHHHhhcCCccCCchH
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccccccccCCCCC------CCcccccCcc
Q 002662 529 TQLRAFYSTTEEISVLFARQQEQLKAMQKTLEDEENYENTSVDIDLCVPDG------ENSRTIVGEK 589 (895)
Q Consensus 529 qqlkaeiEk~EEiee~rk~~~~qLr~LQ~~LEdeek~~s~~lelDl~p~ek------rl~~mSgGEK 589 (895)
+|.++-+.-...|-..|+.+-..=......+=|.+.-+-=++.-.=+.-+- .-.+.|||+|
T Consensus 930 ~q~~A~~alV~~Iid~~~~~~~ad~rw~~~VlD~R~~~~F~~ser~r~dgs~iety~dS~g~SGGQk 996 (1104)
T COG4913 930 SQYKALQALVGLIIDACERHDSADTRWARAVLDPRFRLEFAVSEREREDGSVIETYTDSQGGSGGQK 996 (1104)
T ss_pred HHHHHHHHHHHHHHHHHhcccchhhHHHHHhcChhheEEeeeeeeeccCCceeeeeecCCCCCcchH
No 464
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=54.37 E-value=1.1e+02 Score=37.29 Aligned_cols=103 Identities=21% Similarity=0.279 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH---HH
Q 002662 296 HQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRRV---DR 372 (895)
Q Consensus 296 ~QL~ELq~kLee~ekeL~el~~~k~kLEsEleEL~~qLee~e~~~aeL~kelkkLe~qI~ELkrqLEeEr~~~~E---El 372 (895)
...++++..+++.+.........+-. ..++.+++.+++++....-.--..+.+...+++.++.++...+..... ++
T Consensus 164 ~~~~~~~~~~k~~~~~w~~~~~~Lp~-~~~~~~yk~~v~~i~~~~ik~p~~i~~~~~e~d~lk~e~~~~~~~i~~~~~~l 242 (555)
T TIGR03545 164 ETAEEIEKSLKAMQQKWKKRKKDLPN-KQDLEEYKKRLEAIKKKDIKNPLELQKIKEEFDKLKKEGKADKQKIKSAKNDL 242 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCC-chhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 373 ENAEADLKAAVQKSQLETQEKLKRLSD 399 (895)
Q Consensus 373 Ee~~~eLk~qLqkl~~El~eerkk~ee 399 (895)
+.....++.++..+..--+.+.+++..
T Consensus 243 ~~~~~~~~~~~~~lk~ap~~D~~~L~~ 269 (555)
T TIGR03545 243 QNDKKQLKADLAELKKAPQNDLKRLEN 269 (555)
T ss_pred HHhHHHHHHHHHHHHhccHhHHHHHHH
No 465
>PRK14147 heat shock protein GrpE; Provisional
Probab=54.15 E-value=2e+02 Score=29.88 Aligned_cols=92 Identities=12% Similarity=0.109 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 242 DDFRSLQRSNTELRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKESVSISYLHQLKVLRDMLDAKQKELAEISRISAE 321 (895)
Q Consensus 242 d~Vr~Le~e~~eLr~qLee~~~~i~~lr~Ei~~i~er~e~El~El~e~lrkklE~QL~ELq~kLee~ekeL~el~~~k~k 321 (895)
.....|+.++..|+.++.++....-++..++.+.+.|..+++.++...- .+.-+.+|-.=++.+++.+.........
T Consensus 18 ~~~~~l~~~l~~l~~e~~elkd~~lR~~Ad~eN~rkR~~kE~e~~~~~a---~~~~~~~lLpv~DnlerAl~~~~~~~~~ 94 (172)
T PRK14147 18 PETDPLKAEVESLRSEIALVKADALRERADLENQRKRIARDVEQARKFA---NEKLLGELLPVFDSLDAGLTAAGTEPSP 94 (172)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhhhhHHHHHHhcccchHHH
Q ss_pred HHHHHHHHHHHHHHH
Q 002662 322 QKHEMEDLNDRLSAS 336 (895)
Q Consensus 322 LEsEleEL~~qLee~ 336 (895)
+..-+.-...+|...
T Consensus 95 l~~Gv~mi~k~l~~~ 109 (172)
T PRK14147 95 LRDGLELTYKQLLKV 109 (172)
T ss_pred HHHHHHHHHHHHHHH
No 466
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=53.95 E-value=2.6e+02 Score=28.60 Aligned_cols=100 Identities=8% Similarity=0.069 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 002662 315 ISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRRVD-RENAEADLKAAVQKSQLETQEK 393 (895)
Q Consensus 315 l~~~k~kLEsEleEL~~qLee~e~~~aeL~kelkkLe~qI~ELkrqLEeEr~~~~EE-lEe~~~eLk~qLqkl~~El~ee 393 (895)
+..+.......+.+......++.....+.++.+...+.+..++......+.....++ +.....+...-+..++.++..+
T Consensus 45 l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~A~~ea~~~~~~~~~~A~~ea~~~~~~a~~~ie~e 124 (173)
T PRK13460 45 LDERASGVQNDINKASELRLEAEALLKDYEARLNSAKDEANAIVAEAKSDALKLKNKLLEETNNEVKAQKDQAVKEIELA 124 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 002662 394 LKRLSDAASRRELEQQEVINK 414 (895)
Q Consensus 394 rkk~eee~~~~~eElee~l~K 414 (895)
+.+...+....+-.+--.+..
T Consensus 125 ~~~a~~el~~ei~~lA~~~a~ 145 (173)
T PRK13460 125 KGKALSQLQNQIVEMTITIAS 145 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
No 467
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=53.89 E-value=1.8e+02 Score=33.35 Aligned_cols=82 Identities=16% Similarity=0.229 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHH
Q 002662 279 HEKEMKEMKESVSISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSAS--------MQSCTEANEIMKSQ 350 (895)
Q Consensus 279 ~e~El~El~e~lrkklE~QL~ELq~kLee~ekeL~el~~~k~kLEsEleEL~~qLee~--------e~~~aeL~kelkkL 350 (895)
.+.|-.++.+.. +++++..+....++++..+....-...+.+....+.++...|... ...++++.+.+++.
T Consensus 2 ~~eEW~eL~~ef-q~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~sLk~~~~~~~~e~~~~i~~L~~~Ik~r 80 (330)
T PF07851_consen 2 CEEEWEELQKEF-QELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELKKSLKRCKKSLSAEERELIEKLEEDIKER 80 (330)
T ss_pred hHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHhH
Q 002662 351 KVTIDELKTQL 361 (895)
Q Consensus 351 e~qI~ELkrqL 361 (895)
+..+.+.+.-|
T Consensus 81 ~~~l~DmEa~L 91 (330)
T PF07851_consen 81 RCQLFDMEAFL 91 (330)
T ss_pred HhhHHHHHhhC
No 468
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=53.53 E-value=84 Score=30.35 Aligned_cols=55 Identities=27% Similarity=0.297 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 283 MKEMKESVSISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQ 338 (895)
Q Consensus 283 l~El~e~lrkklE~QL~ELq~kLee~ekeL~el~~~k~kLEsEleEL~~qLee~e~ 338 (895)
..++...+ .+++.++..+...+..++..+.++.+.-..|+-+..-|..+|...+.
T Consensus 3 k~elfd~l-~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~~~ 57 (110)
T PRK13169 3 KKEIFDAL-DDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEELEA 57 (110)
T ss_pred hhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
No 469
>PF07464 ApoLp-III: Apolipophorin-III precursor (apoLp-III); InterPro: IPR010009 This family consists of several insect apolipoprotein-III sequences. Exchangeable apolipoproteins constitute a functionally important family of proteins that play critical roles in lipid transport and lipoprotein metabolism. Apolipophorin III (apoLp-III) is a prototypical exchangeable apolipoprotein found in many insect species that functions in transport of diacylglycerol (DAG) from the fat body lipid storage depot to flight muscles in the adult life stage [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0005576 extracellular region; PDB: 1EQ1_A.
Probab=53.12 E-value=1.8e+02 Score=29.79 Aligned_cols=136 Identities=13% Similarity=0.207 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Q 002662 279 HEKEMKEMKESVSISYLHQL-----KVLRDMLDAKQKELAE-ISRISAEQKHEMED----LNDRLSASMQSCTEANEIMK 348 (895)
Q Consensus 279 ~e~El~El~e~lrkklE~QL-----~ELq~kLee~ekeL~e-l~~~k~kLEsEleE----L~~qLee~e~~~aeL~kelk 348 (895)
.+....++...+...+...+ +++..-+.+-...+.. +..-...|+.+|.+ +...+..+...+.+....++
T Consensus 1 ~~~~~~e~~~~~~~~~~~~~~~~~~~Ev~~aik~~sd~~~~~l~~~~~~l~eeik~~n~~~~e~l~~~~~kl~et~~~L~ 80 (155)
T PF07464_consen 1 IQQHAQEFQKEFQEQVNKLLGSQNQQEVVKAIKEQSDSVAQQLQNVSSSLQEEIKDANPEAEEALKQLKTKLEETAEKLR 80 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSS--SS-SSHHHHHHHHHHHHHHHHHHHHHHHHHTT-SSTHHHHHHHHHHHHHHHHHGGG
T ss_pred CchHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHH
Q ss_pred ----HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 349 ----SQKVTIDELKTQLDEERNLRRVDRENAEADLKAAVQKSQLETQEKLKRLSDAASRRELEQQEVINK 414 (895)
Q Consensus 349 ----kLe~qI~ELkrqLEeEr~~~~EElEe~~~eLk~qLqkl~~El~eerkk~eee~~~~~eElee~l~K 414 (895)
.+..+..+|...|......+..+.++...++.+.+..++..++.-++.+.+......+++...+..
T Consensus 81 k~~Pev~~qa~~l~e~lQ~~vq~l~~E~qk~~k~v~~~~~~~~e~l~~~~K~~~D~~~k~~~~~~~~l~~ 150 (155)
T PF07464_consen 81 KANPEVEKQANELQEKLQSAVQSLVQESQKLAKEVSENSEGANEKLQPAIKQAYDDAVKAAQKVQKQLHE 150 (155)
T ss_dssp G-SHHHHHT-SSSHHHHHHHHHHHHHHHHHHHHHHHS---SS-GGGHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 470
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=53.09 E-value=3.4e+02 Score=29.71 Aligned_cols=206 Identities=14% Similarity=0.151 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHhHH
Q 002662 293 SYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCT----------EANEIMKSQKVTIDELKTQLD 362 (895)
Q Consensus 293 klE~QL~ELq~kLee~ekeL~el~~~k~kLEsEleEL~~qLee~e~~~a----------eL~kelkkLe~qI~ELkrqLE 362 (895)
+.+.+|+.|+.--++.-+-=.+|.........-+.+...+|..+...+. ++....+.++..+...-
T Consensus 8 rVq~eLe~LN~atd~IN~lE~~L~~ar~~fr~~l~e~~~kL~~~~kkLg~~I~karPYyea~~~a~~aq~e~q~Aa---- 83 (239)
T PF05276_consen 8 RVQEELEKLNQATDEINRLENELDEARATFRRLLSESTKKLNELAKKLGSCIEKARPYYEARRKAKEAQQEAQKAA---- 83 (239)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHH----
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Q 002662 363 EERNLRRVDRENAEADLKAAVQKSQLETQEKLKRLSDAASRRELEQQEVINKLQIAEK---QSSLQVESLKLKLDETRER 439 (895)
Q Consensus 363 eEr~~~~EElEe~~~eLk~qLqkl~~El~eerkk~eee~~~~~eElee~l~KLeE~EK---k~r~elEdLk~kLE~~ra~ 439 (895)
...+-.-......+..+..+...+...-....+-..+ +-|.....++.+.+. +....+......+..+...
T Consensus 84 ----~~yerA~~~h~aAKe~v~laEq~l~~~~~~~~D~~wq--EmLn~A~~kVneAE~ek~~ae~eH~~~~~~~~~ae~~ 157 (239)
T PF05276_consen 84 ----LQYERANSMHAAAKEMVALAEQSLMSDSNWTFDPAWQ--EMLNHATQKVNEAEQEKTRAEREHQRRARIYNEAEQR 157 (239)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002662 440 LVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAREVAWAKVSGLELDILAATR 508 (895)
Q Consensus 440 l~~lEkk~reLEkqLeEEk~~~~~lqkei~elE~EireLeeELE~ek~e~eel~d~v~~LE~ELeka~r 508 (895)
+..|+++.+.--.+-.=.=.....+...+.....++..|+..|..-+..|..+...+..+-.+|..-++
T Consensus 158 v~~Lek~lkr~I~KSrPYfe~K~~~~~~l~~~k~~v~~Le~~v~~aK~~Y~~ALrnLE~ISeeIH~~R~ 226 (239)
T PF05276_consen 158 VQQLEKKLKRAIKKSRPYFELKAKFNQQLEEQKEKVEELEAKVKQAKSRYSEALRNLEQISEEIHEQRR 226 (239)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 471
>PRK14151 heat shock protein GrpE; Provisional
Probab=52.40 E-value=2.6e+02 Score=29.17 Aligned_cols=96 Identities=16% Similarity=0.064 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 244 FRSLQRSNTELRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKESVSISYLHQLKVLRDMLDAKQKELAEISRISAEQK 323 (895)
Q Consensus 244 Vr~Le~e~~eLr~qLee~~~~i~~lr~Ei~~i~er~e~El~El~e~lrkklE~QL~ELq~kLee~ekeL~el~~~k~kLE 323 (895)
+..|+.++..|+.++.++...+-++..+..+.+.|.++++.++..-- .+.-+.+|-.-++.+++.+......-..+.
T Consensus 22 ~~~l~~~i~~le~e~~el~d~~lR~~Ae~eN~rkR~~kE~e~~~~~a---~~~~~~~LLpv~DnlerAl~~~~~~~~~~~ 98 (176)
T PRK14151 22 GDDLTARVQELEEQLAAAKDQSLRAAADLQNVRRRAEQDVEKAHKFA---LEKFAGDLLPVVDSLERGLELSSADDEAIK 98 (176)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhHHhHHHHHHhcccccchhHH
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 002662 324 HEMEDLNDRLSASMQSCTE 342 (895)
Q Consensus 324 sEleEL~~qLee~e~~~ae 342 (895)
+=+..+.--+..+...+..
T Consensus 99 ~~~~Gv~mi~k~l~~~L~k 117 (176)
T PRK14151 99 PMREGVELTLKMFQDTLKR 117 (176)
T ss_pred HHHHHHHHHHHHHHHHHHH
No 472
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=52.13 E-value=46 Score=38.51 Aligned_cols=93 Identities=15% Similarity=0.302 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 240 SLDDFRSLQRSNTELRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKESVSISYLHQLKVLRDMLDAKQKELAEISRIS 319 (895)
Q Consensus 240 ~ld~Vr~Le~e~~eLr~qLee~~~~i~~lr~Ei~~i~er~e~El~El~e~lrkklE~QL~ELq~kLee~ekeL~el~~~k 319 (895)
.+..+..|...+..|..+++...........++..+..+.......+...+ ..++..+.++..++.+....+..+...+
T Consensus 96 ~~k~l~el~~~~~elkkEie~IKk~q~e~~~~i~~~~~~~~~~~~~l~~Ri-~e~Eeris~lEd~~~~i~~~~~~~~k~i 174 (370)
T PF02994_consen 96 SIKELNELKKRIKELKKEIENIKKNQSEMKLEIENLKKKLENIDESLNSRI-DELEERISELEDRIEEIEQAIKELEKRI 174 (370)
T ss_dssp ----------------------H-------------------------HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHH-HHHHhHHHHHHHHHHHHhhHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHH
Q 002662 320 AEQKHEMEDLNDRL 333 (895)
Q Consensus 320 ~kLEsEleEL~~qL 333 (895)
..++..+.+|..+.
T Consensus 175 ~~l~~kl~DlEnrs 188 (370)
T PF02994_consen 175 KKLEDKLDDLENRS 188 (370)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhc
No 473
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=51.58 E-value=88 Score=30.02 Aligned_cols=52 Identities=15% Similarity=0.184 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 002662 312 LAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDE 363 (895)
Q Consensus 312 L~el~~~k~kLEsEleEL~~qLee~e~~~aeL~kelkkLe~qI~ELkrqLEe 363 (895)
..++-.++..|+..+..+..+|..++..+.++..+-..|+-+...|...|.+
T Consensus 3 k~~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~ 54 (107)
T PF06156_consen 3 KKELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEE 54 (107)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 474
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=51.56 E-value=2.9e+02 Score=28.37 Aligned_cols=100 Identities=9% Similarity=0.143 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 002662 315 ISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRRVD-RENAEADLKAAVQKSQLETQEK 393 (895)
Q Consensus 315 l~~~k~kLEsEleEL~~qLee~e~~~aeL~kelkkLe~qI~ELkrqLEeEr~~~~EE-lEe~~~eLk~qLqkl~~El~ee 393 (895)
+..+.......+.+.......+.....+....+...+.+..++..+...+-....+. +.+...+....+..++.++..+
T Consensus 47 l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~a~~~a~~~~~~~~~~A~~ea~~~~~~A~~~I~~e 126 (173)
T PRK13453 47 MDKRERDINRDIDDAEQAKLNAQKLEEENKQKLKETQEEVQKILEDAKVQARQQQEQIIHEANVRANGMIETAQSEINSQ 126 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 002662 394 LKRLSDAASRRELEQQEVINK 414 (895)
Q Consensus 394 rkk~eee~~~~~eElee~l~K 414 (895)
+.+...+......++-..+..
T Consensus 127 k~~a~~~l~~ei~~lA~~~a~ 147 (173)
T PRK13453 127 KERAIADINNQVSELSVLIAS 147 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
No 475
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=50.84 E-value=59 Score=40.12 Aligned_cols=256 Identities=17% Similarity=0.166 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH-HHHHHHHHH----------HHHHHHHHHHHHHHH
Q 002662 240 SLDDFRSLQRSNTELRKQLESQVLEIDKLRNENRVVVERHEKEMK-EMKESVSIS----------YLHQLKVLRDMLDAK 308 (895)
Q Consensus 240 ~ld~Vr~Le~e~~eLr~qLee~~~~i~~lr~Ei~~i~er~e~El~-El~e~lrkk----------lE~QL~ELq~kLee~ 308 (895)
++.++..|...+..|+.+.......+..+...|..+-....-... ...+..... -...+..|...+..+
T Consensus 140 S~~~l~~l~~~l~~L~~e~~~R~~~v~~l~~~I~~l~~~L~~~~~~~~~e~~l~~~~~~~~~~~Ls~~~l~~L~~~~~~L 219 (619)
T PF03999_consen 140 SLEELEELRQHLQRLQEEKERRLEEVRELREEIISLMEELGIDPERTSFEKDLLSYSEDEESFCLSDENLEKLQELLQEL 219 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccchhhccccccccccCCCCHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 309 QKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQ-KVTIDELKTQLDEERNLRRVDRENAEADLKAAVQKSQ 387 (895)
Q Consensus 309 ekeL~el~~~k~kLEsEleEL~~qLee~e~~~aeL~kelkkL-e~qI~ELkrqLEeEr~~~~EElEe~~~eLk~qLqkl~ 387 (895)
+.........+..|...+..|=..|..-...+.........+ ...|..++.+|+-=...+.+-+..-+.++...|..+.
T Consensus 220 ~~~k~~r~~~~~~l~~~i~~LW~~L~~~~ee~~~F~~~~~~ls~~~i~~l~~El~RL~~lK~~~lk~~I~~~R~ei~elW 299 (619)
T PF03999_consen 220 EEEKEEREEKLQELREKIEELWNRLDVPEEEREAFLEENSGLSLDTIEALEEELERLEELKKQNLKEFIEKKRQEIEELW 299 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhccCcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q ss_pred HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 002662 388 LE---TQEKLKRLSDAASRRELEQQEVINKLQIAEKQSSLQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASW 464 (895)
Q Consensus 388 ~E---l~eerkk~eee~~~~~eElee~l~KLeE~EKk~r~elEdLk~kLE~~ra~l~~lEkk~reLEkqLeEEk~~~~~l 464 (895)
.. -.+++............ ++.......++..|+..++.-+.-+...++...-+.....=+.......
T Consensus 300 d~~~~s~eer~~F~~~~~d~~~---------E~lL~~hE~Ei~~Lk~~~~~~k~Il~~v~k~~~l~~~~~~Le~~~~D~~ 370 (619)
T PF03999_consen 300 DKCHYSEEERQAFTPFYIDSYT---------EELLELHEEEIERLKEEYESRKPILELVEKWESLWEEMEELEESSKDPS 370 (619)
T ss_dssp --------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CC
T ss_pred HHhCCCHHHHHHHHHHhcccch---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 002662 465 KKRVEELENEIKKLREELESEKAAREVAWAKVSGLELDILAATRDLDFE 513 (895)
Q Consensus 465 qkei~elE~EireLeeELE~ek~e~eel~d~v~~LE~ELeka~r~LE~E 513 (895)
++..-...|.++.+.+..+..++=.|+.+|.+....|+.+
T Consensus 371 ---------Rl~~RGg~LLkEEk~rk~i~k~lPkle~~L~~~l~~wE~e 410 (619)
T PF03999_consen 371 ---------RLNNRGGHLLKEEKERKRIQKKLPKLEEELKKKLEEWEEE 410 (619)
T ss_dssp ---------GG------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------hhcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
No 476
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=50.64 E-value=1.8e+02 Score=25.88 Aligned_cols=71 Identities=13% Similarity=0.154 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 002662 293 SYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDE 363 (895)
Q Consensus 293 klE~QL~ELq~kLee~ekeL~el~~~k~kLEsEleEL~~qLee~e~~~aeL~kelkkLe~qI~ELkrqLEe 363 (895)
+++..++..-..+..++-++.++..+...|..+..++....+.++.....+..+-..-+..|..|...+++
T Consensus 8 kLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsLLGkme~ 78 (79)
T COG3074 8 KLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRALLGKMEE 78 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
No 477
>PF15233 SYCE1: Synaptonemal complex central element protein 1
Probab=50.47 E-value=2.7e+02 Score=27.75 Aligned_cols=112 Identities=20% Similarity=0.194 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-------
Q 002662 404 RELEQQEVINKLQIAEKQSSLQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIK------- 476 (895)
Q Consensus 404 ~~eElee~l~KLeE~EKk~r~elEdLk~kLE~~ra~l~~lEkk~reLEkqLeEEk~~~~~lqkei~elE~Eir------- 476 (895)
+++++...+++|+...|+...++..++.-.+.++..+..|-.+.-.|+..+...+....-++-.-.+.+.+..
T Consensus 7 ~iE~LInrInelQQaKKk~~EELgEa~~l~eaL~~ELDsL~~EkvhLeeilnkKqe~l~iLqlhcqeke~eaqrq~~~~~ 86 (134)
T PF15233_consen 7 QIEDLINRINELQQAKKKSSEELGEAQALWEALQRELDSLNGEKVHLEEILNKKQETLRILQLHCQEKESEAQRQQTLLQ 86 (134)
T ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhH
Q ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 002662 477 ------KLREELESEKAAREVAWAKVSGLELDILAATRDLDFERRRL 517 (895)
Q Consensus 477 ------eLeeELE~ek~e~eel~d~v~~LE~ELeka~r~LE~Ek~rL 517 (895)
..+..|+.+...+.++|+--. ...+..-+..++.-+..|
T Consensus 87 eck~R~~fe~qLE~lm~qHKdLwefh~--~erLa~EI~~l~~sKEQL 131 (134)
T PF15233_consen 87 ECKLRLDFEEQLEDLMGQHKDLWEFHM--PERLAREICALESSKEQL 131 (134)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcc--HHHHHHHHHHHHhhHHHH
No 478
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=50.45 E-value=3.9e+02 Score=29.64 Aligned_cols=129 Identities=16% Similarity=0.192 Sum_probs=0.0
Q ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHH
Q 002662 427 ESLKLKLDE--TRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAA------------REVA 492 (895)
Q Consensus 427 EdLk~kLE~--~ra~l~~lEkk~reLEkqLeEEk~~~~~lqkei~elE~EireLeeELE~ek~e------------~eel 492 (895)
.+...++.. .+.......+....+..++.........++.++..++.++..+...+..+..- +...
T Consensus 108 ~eI~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~E~~g~~~tg~~G~Gp~~~~~ 187 (301)
T PF14362_consen 108 KEIDQKLDEIRQEKQDAIQAQVQASFDAQIARLDAEIAALQAEIDQLEKEIDRAQQEAQCEIFGTGGTGVPGKGPRYKEK 187 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCcHHHHH
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHH----HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 002662 493 WAKVSGLELDILAATRDLDFERRRLK----AARERIMLRETQLRAFYSTTEEISVLFARQQEQLKAM 555 (895)
Q Consensus 493 ~d~v~~LE~ELeka~r~LE~Ek~rLq----~~rErL~~~eqqlkaeiEk~EEiee~rk~~~~qLr~L 555 (895)
...+..++.++..+..+++.....+. .++.++........+..........=|-.....|..+
T Consensus 188 ~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~G~l~R~~Al~~L 254 (301)
T PF14362_consen 188 RAQLDAAQAELDTLQAQIDAAIAALDAQIAARKARLDEARQAKVAEFQAIISANDGFLARLEALWEL 254 (301)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHhhccCCCHHHHHHHHHHH
No 479
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=50.42 E-value=3.4e+02 Score=28.87 Aligned_cols=98 Identities=11% Similarity=0.163 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 329 LNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRRVDRENAEADLKAAVQKSQLETQEKLKRLSDAASRRELEQ 408 (895)
Q Consensus 329 L~~qLee~e~~~aeL~kelkkLe~qI~ELkrqLEeEr~~~~EElEe~~~eLk~qLqkl~~El~eerkk~eee~~~~~eEl 408 (895)
|..|-......+.++.+.....+..+.+++..|.+-+....+.+++...+.+.....+..++..+..+....+...++..
T Consensus 82 Le~R~~~I~~~L~~Ae~~k~eAe~~~~~ye~~L~~Ar~eA~~Ii~~Ar~ea~~~~e~~~~~a~~ea~~~l~~Ae~~I~~e 161 (204)
T PRK09174 82 IETRRDRIAQDLDQAARLKQEADAAVAAYEQELAQARAKAHSIAQAAREAAKAKAEAERAAIEASLEKKLKEAEARIAAI 161 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HH-HHHHHHHHHHHHHHHH
Q 002662 409 QE-VINKLQIAEKQSSLQV 426 (895)
Q Consensus 409 ee-~l~KLeE~EKk~r~el 426 (895)
.. .+..|....-++...+
T Consensus 162 k~~A~~el~~~a~e~A~~I 180 (204)
T PRK09174 162 KAKAMADVGSIAEETAAAI 180 (204)
T ss_pred HHHHHHHHHHHHHHHHHHH
No 480
>PF15233 SYCE1: Synaptonemal complex central element protein 1
Probab=50.41 E-value=2.7e+02 Score=27.74 Aligned_cols=131 Identities=15% Similarity=0.128 Sum_probs=0.0
Q ss_pred cccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 231 GICSPDGPLSLDDFRSLQRSNTELRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKESVSISYLHQLKVLRDMLDAKQK 310 (895)
Q Consensus 231 ~~sa~~~~~~ld~Vr~Le~e~~eLr~qLee~~~~i~~lr~Ei~~i~er~e~El~El~e~lrkklE~QL~ELq~kLee~ek 310 (895)
|+-.|.....|.+|..|++.......+|.+...-.+.|..++.++... ..-+.+-+ .+.+.-+.-|+-...+.+.
T Consensus 2 gsLeP~iE~LInrInelQQaKKk~~EELgEa~~l~eaL~~ELDsL~~E----kvhLeeil-nkKqe~l~iLqlhcqeke~ 76 (134)
T PF15233_consen 2 GSLEPQIEDLINRINELQQAKKKSSEELGEAQALWEALQRELDSLNGE----KVHLEEIL-NKKQETLRILQLHCQEKES 76 (134)
T ss_pred CCccchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhh----HHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhHHHHHHHHHHH
Q 002662 311 ELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMK--SQKVTIDELKTQLDEERNLRRVD 371 (895)
Q Consensus 311 eL~el~~~k~kLEsEleEL~~qLee~e~~~aeL~kelk--kLe~qI~ELkrqLEeEr~~~~EE 371 (895)
............. ..-++..+|+.+-.+-.++..--. +|-.+|..+. ..+.+++.+
T Consensus 77 eaqrq~~~~~eck-~R~~fe~qLE~lm~qHKdLwefh~~erLa~EI~~l~----~sKEQLL~E 134 (134)
T PF15233_consen 77 EAQRQQTLLQECK-LRLDFEEQLEDLMGQHKDLWEFHMPERLAREICALE----SSKEQLLKE 134 (134)
T ss_pred HhhhhhhhhHhHH-HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH----hhHHHHhcC
No 481
>PF15372 DUF4600: Domain of unknown function (DUF4600)
Probab=50.40 E-value=2.7e+02 Score=27.73 Aligned_cols=122 Identities=18% Similarity=0.057 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 002662 392 EKLKRLSDAASRRELEQQEVINKLQIAEKQSSLQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEEL 471 (895)
Q Consensus 392 eerkk~eee~~~~~eElee~l~KLeE~EKk~r~elEdLk~kLE~~ra~l~~lEkk~reLEkqLeEEk~~~~~lqkei~el 471 (895)
+|+.+|+ ........|+..+.-|+++..+++..--+... ..+.--.-....+..|-++|+.+ ...+
T Consensus 5 EWktRYE-tQ~E~N~QLekqi~~l~~kiek~r~n~~drl~---siR~ye~Ms~~~l~~llkqLEke----------K~~L 70 (129)
T PF15372_consen 5 EWKTRYE-TQLELNDQLEKQIIILREKIEKIRGNPSDRLS---SIRRYEQMSVESLNQLLKQLEKE----------KRSL 70 (129)
T ss_pred hHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCCCccccH---HHHHHhhccHHHHHHHHHHHHHH----------HHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 002662 472 ENEIKKLREELESEKAAREVAWAKVSGLELDILAATRDLDFERRRLKAARERIMLR 527 (895)
Q Consensus 472 E~EireLeeELE~ek~e~eel~d~v~~LE~ELeka~r~LE~Ek~rLq~~rErL~~~ 527 (895)
+.+++.++=.|+.+.++|-.+.+..+..-.+|..+-..++.-+..-..+..+....
T Consensus 71 e~qlk~~e~rLeQEsKAyhk~ndeRr~ylaEi~~~s~~~~~~k~qq~~~~~~~~e~ 126 (129)
T PF15372_consen 71 ENQLKDYEWRLEQESKAYHKANDERRQYLAEISQTSALHQVSKRQQMDQLHRMNEN 126 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhHhhhcccccchhHHhhhc
No 482
>PF15456 Uds1: Up-regulated During Septation
Probab=50.18 E-value=2.6e+02 Score=27.52 Aligned_cols=82 Identities=16% Similarity=0.214 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHH
Q 002662 240 SLDDFRSLQRSNTELRKQLESQVLEIDKLRNENRVVVERHEKEMKEM----------KESVSISYLHQLKVLRDMLDAKQ 309 (895)
Q Consensus 240 ~ld~Vr~Le~e~~eLr~qLee~~~~i~~lr~Ei~~i~er~e~El~El----------~e~lrkklE~QL~ELq~kLee~e 309 (895)
+.++|..|.++...|..+++....++. ++..++..... +..+ ...-..+.+.++.....++++..
T Consensus 20 s~eEVe~LKkEl~~L~~R~~~lr~kl~-le~k~RdAa~s----l~~l~~~~~~~~~~~~~~~~~~eeel~~~~rk~ee~~ 94 (124)
T PF15456_consen 20 SFEEVEELKKELRSLDSRLEYLRRKLA-LESKIRDAAHS----LSRLYSSSSRRARFSRESSLKAEEELAESDRKCEELA 94 (124)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH----HHHhcCCCccccCCCcchHHHHHHHHHHHHhhHHHHH
Q ss_pred HHHHHHHHHHHHHHHHH
Q 002662 310 KELAEISRISAEQKHEM 326 (895)
Q Consensus 310 keL~el~~~k~kLEsEl 326 (895)
.++..+..+...++..+
T Consensus 95 ~eL~~le~R~~~~~~rL 111 (124)
T PF15456_consen 95 QELWKLENRLAEVRQRL 111 (124)
T ss_pred HHHHHHHHHHHHHHHHH
No 483
>KOG3564 consensus GTPase-activating protein [General function prediction only]
Probab=50.10 E-value=1.7e+02 Score=34.92 Aligned_cols=95 Identities=14% Similarity=0.194 Sum_probs=0.0
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 266 DKLRNENRVVVERHEKEMKEMKESVSISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANE 345 (895)
Q Consensus 266 ~~lr~Ei~~i~er~e~El~El~e~lrkklE~QL~ELq~kLee~ekeL~el~~~k~kLEsEleEL~~qLee~e~~~aeL~k 345 (895)
+.+.+.++-+.+-.+-+...+.+-. +.++..++.+.+.+.+.+..|..+..+...|.-.+.....++..+-.....++.
T Consensus 13 ~~l~r~~~~l~~g~e~ef~rl~k~f-ed~~ek~~r~~ae~~~~~~~L~Ka~tk~~~ldvklkha~~~vda~ik~rr~ae~ 91 (604)
T KOG3564|consen 13 EQLVRDIEILGEGNEDEFIRLRKDF-EDFEEKWKRTDAELGKYKDLLAKAETKRSALDVKLKHARNQVDAEIKRRRRAEA 91 (604)
T ss_pred HHHHHHHHHhcCccHHHHHHHHHHH-HHHHHHHhhhhHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHhh
Q ss_pred HHHHHHHHHHHHHHhH
Q 002662 346 IMKSQKVTIDELKTQL 361 (895)
Q Consensus 346 elkkLe~qI~ELkrqL 361 (895)
.+.+++.+|.-+...|
T Consensus 92 d~~~~E~~i~~i~d~l 107 (604)
T KOG3564|consen 92 DCEKLETQIQLIKDML 107 (604)
T ss_pred hHHHHHHHHHHHHHHH
No 484
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=50.09 E-value=95 Score=32.26 Aligned_cols=70 Identities=19% Similarity=0.279 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 002662 293 SYLHQLKVLRDMLDAKQKELAEISRISAE-QKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLD 362 (895)
Q Consensus 293 klE~QL~ELq~kLee~ekeL~el~~~k~k-LEsEleEL~~qLee~e~~~aeL~kelkkLe~qI~ELkrqLE 362 (895)
.+..++..++.+++...++.....+...+ ...+...+..+++.++..+...+.++..++.|.+.+.++.+
T Consensus 122 ~li~~l~~~~~~~~~~~kq~~~~~~~~~~~~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~eyd 192 (192)
T PF05529_consen 122 SLIKELIKLEEKLEALKKQAESASEAAEKLLKEENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQKEYD 192 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
No 485
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=50.00 E-value=2.6e+02 Score=32.20 Aligned_cols=84 Identities=26% Similarity=0.261 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 241 LDDFRSLQRSNTELRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKESVSISYLHQLKVLRDMLDAKQKELAEISRISA 320 (895)
Q Consensus 241 ld~Vr~Le~e~~eLr~qLee~~~~i~~lr~Ei~~i~er~e~El~El~e~lrkklE~QL~ELq~kLee~ekeL~el~~~k~ 320 (895)
++.+..|...+..|..+-+.+..++..+..+++..... ..++...+-+++..-|.+-++++..+++.|..+...-.
T Consensus 136 l~~~~~l~~~~~~L~~enerL~~e~~~~~~qlE~~v~~----K~~~E~~L~~KF~~vLNeKK~KIR~lq~~L~~~~~~~~ 211 (342)
T PF06632_consen 136 LDANSRLQAENEHLQKENERLESEANKLLKQLEKFVNA----KEEHEEDLYAKFVLVLNEKKAKIRELQRLLASAKEEEK 211 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcccc
Q ss_pred HHHHHHHH
Q 002662 321 EQKHEMED 328 (895)
Q Consensus 321 kLEsEleE 328 (895)
....+..+
T Consensus 212 ~~~~~~~~ 219 (342)
T PF06632_consen 212 SPKQERED 219 (342)
T ss_dssp HHH-----
T ss_pred chhhhhcc
No 486
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=49.42 E-value=5e+02 Score=30.52 Aligned_cols=128 Identities=16% Similarity=0.220 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 002662 251 NTELRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKESVS-ISYLHQLKVLRDMLDAKQKELAE-ISRISAEQKHEMED 328 (895)
Q Consensus 251 ~~eLr~qLee~~~~i~~lr~Ei~~i~er~e~El~El~e~lr-kklE~QL~ELq~kLee~ekeL~e-l~~~k~kLEsEleE 328 (895)
..++..++..+... +..-+......+...+..+...+. ..-...+...+.+|+...+.+.. +...+...+..+..
T Consensus 262 ~~e~~q~Ld~l~~r---L~~a~~~~L~~~~~~L~~L~~rL~~~~P~~~l~~~~q~L~~l~~rL~~a~~~~L~~~~~~L~~ 338 (438)
T PRK00286 262 RAELLQRLQQLQQR---LARAMRRRLEQKRQRLDQLARRLKFQSPERLLAQQQQRLDRLQQRLQRALERRLRLAKQRLER 338 (438)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 329 LNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRRVDRENAEADLKAAVQKS 386 (895)
Q Consensus 329 L~~qLee~e~~~aeL~kelkkLe~qI~ELkrqLEeEr~~~~EElEe~~~eLk~qLqkl 386 (895)
+..+|. ...-...+.+.+..+..+...|......+......+...+...|..+
T Consensus 339 l~~rL~-----~lsP~~~L~r~~qrL~~L~~rL~~a~~~~L~~~~~rL~~l~~rL~~l 391 (438)
T PRK00286 339 LSQRLQ-----QQNPQRRIERAQQRLEQLEQRLRRAMRRQLKRKRQRLEALAQQLEAL 391 (438)
T ss_pred HHHHHh-----hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
No 487
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=49.40 E-value=2.1e+02 Score=26.15 Aligned_cols=71 Identities=11% Similarity=0.149 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 002662 293 SYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDE 363 (895)
Q Consensus 293 klE~QL~ELq~kLee~ekeL~el~~~k~kLEsEleEL~~qLee~e~~~aeL~kelkkLe~qI~ELkrqLEe 363 (895)
+++..++..-..+..++-++.++..+...|..++..+...-..+...+..+..+...-+..+..|-..+++
T Consensus 8 qLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LLGkm~~ 78 (79)
T PRK15422 8 KLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRMEE 78 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
No 488
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=49.34 E-value=1.3e+02 Score=30.54 Aligned_cols=65 Identities=12% Similarity=0.182 Sum_probs=0.0
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 002662 454 VCKEQNVSASWKKRVEELENEIKKLREELESEKA---AREVAWAKVSGLELDILAATRDLDFERRRLK 518 (895)
Q Consensus 454 LeEEk~~~~~lqkei~elE~EireLeeELE~ek~---e~eel~d~v~~LE~ELeka~r~LE~Ek~rLq 518 (895)
+...+..+..+..++..+..+|......|..++. ..+++...+..|+.++..+...|+.+...++
T Consensus 15 i~~~K~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~~~~~~~e~~l~~~~ 82 (155)
T PF06810_consen 15 IEAPKAKVDKVKEERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNKTAKEEYEAKLAQMK 82 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 489
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=49.00 E-value=6.7e+02 Score=31.88 Aligned_cols=245 Identities=18% Similarity=0.109 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 002662 298 LKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCT------EANEIMKSQKVTIDELKTQLDEERNLRRVD 371 (895)
Q Consensus 298 L~ELq~kLee~ekeL~el~~~k~kLEsEleEL~~qLee~e~~~a------eL~kelkkLe~qI~ELkrqLEeEr~~~~EE 371 (895)
+.+|+.+-......|+.....-.+|.--+.+|-.=|+.....+. ---..+.....-.+.|+++++.-.-..+.-
T Consensus 80 w~~l~kks~~ir~~lea~~~~w~kl~~~l~el~~wl~~kd~el~~q~p~ggd~~avq~q~~~~~a~~re~k~k~~~~~s~ 159 (966)
T KOG4286|consen 80 WSELRKKSLNIRSHLEASSDQWKRLHLSLQELLVWLQLKDDELSRQAPIGGDFPAVQKQNDVHRAFKRELKTKEPVIMST 159 (966)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhHHHHhcCCCCCChHHHHHHHHHHHHHHHHHhhcccHHHHH
Q ss_pred HHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 372 RENA-----------EADLKAAVQKSQLETQEKLKRLSDAASRRELEQQEVINKLQIAEKQSSLQVESLKLKLDETRERL 440 (895)
Q Consensus 372 lEe~-----------~~eLk~qLqkl~~El~eerkk~eee~~~~~eElee~l~KLeE~EKk~r~elEdLk~kLE~~ra~l 440 (895)
++.+ ..++....+.--.+-.+-+.+.. ..+-+++.+.-.+|......-...++....+|..++.++
T Consensus 160 ~e~a~~fl~~~p~e~~e~~~~~~e~~p~~r~q~~~r~~---~kqa~~~~~~we~l~~~~~~w~k~v~~~le~l~elq~a~ 236 (966)
T KOG4286|consen 160 LETARIFLTEQPLEGLEKYQEPRELPPEERAQNVTRLL---RKQAEEVNTEWEKLNLHSADWQRKIDETLERLQELQEAT 236 (966)
T ss_pred HHHHHHHHhcCCCcchhhcCCcccCCHHHHHHHHHHHH---HHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH-HHHhhHHHHHHH
Q 002662 441 VTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKA---AREVAWAKVSGLELDIL-AATRDLDFERRR 516 (895)
Q Consensus 441 ~~lEkk~reLEkqLeEEk~~~~~lqkei~elE~EireLeeELE~ek~---e~eel~d~v~~LE~ELe-ka~r~LE~Ek~r 516 (895)
.+++-.+++-+....-|+..-.-+--.+...-.++..+++++.-++- -..++..++..++..+. .+..+||....|
T Consensus 237 ~el~~~l~~ae~~~~~w~pvgdl~idsl~~h~e~~~~~~~ei~p~~~~v~~vndla~ql~~~d~~ls~~~~~~le~~n~r 316 (966)
T KOG4286|consen 237 DELDLKLRQAEVIKGSWQPVGDLLIDSLQDHLEKVKALRGEIAPLKENVSHVNDLARQLTTLDIQLSPYNLSTLEDLNTR 316 (966)
T ss_pred HHHHHhhhHHHhhhhccccHHHHHHhHHHHHHHHHHHHHhhcchHhhchhhHHHHHHHhhhcccCCChhhHhhHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 002662 517 LKAARERIMLRETQLRAFYSTTEEISVLF 545 (895)
Q Consensus 517 Lq~~rErL~~~eqqlkaeiEk~EEiee~r 545 (895)
.+..+--+-+++++++.-..-|--+.+.|
T Consensus 317 wk~Lq~SV~~rl~qlrna~~dfgp~sqhf 345 (966)
T KOG4286|consen 317 WKLLQVSVPDRLTQLRNAHRDFGPISQHF 345 (966)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcHHHHH
No 490
>PF00901 Orbi_VP5: Orbivirus outer capsid protein VP5; InterPro: IPR000145 The orbivirus VP5 protein is one of the two proteins (with VP2) which make up the virus particle outer capsid. Cryoelectron microscopy indicates that VP5 is a trimer suggesting that there are 360 copies of VP5 per virion [].; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=48.96 E-value=5.6e+02 Score=30.94 Aligned_cols=135 Identities=11% Similarity=0.186 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 279 HEKEMKEMKESVSISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELK 358 (895)
Q Consensus 279 ~e~El~El~e~lrkklE~QL~ELq~kLee~ekeL~el~~~k~kLEsEleEL~~qLee~e~~~aeL~kelkkLe~qI~ELk 358 (895)
....+.++.++. +.-+...+--..-++..-..|.++..-.+.....-+.-..+++-++..+..+.+..+.-..+|..|.
T Consensus 89 l~~Kl~eLE~e~-k~d~v~~khn~~I~~k~g~~L~~v~~~~~~~~~~~~~e~~q~~~LekAl~~~~~i~~~E~~~l~~L~ 167 (508)
T PF00901_consen 89 LQRKLKELEDEQ-KEDEVREKHNKKIIEKFGNDLEKVYKFMKGQEKVEEEEENQIEILEKALKSYGKIVKEENKQLDRLA 167 (508)
T ss_pred HHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 359 TQLDEERNLRRVDRENAEADLKAAVQKSQLETQEKLKRLSDAASRRELEQQEVINK 414 (895)
Q Consensus 359 rqLEeEr~~~~EElEe~~~eLk~qLqkl~~El~eerkk~eee~~~~~eElee~l~K 414 (895)
+.|..|...+-.+...-+.+....+..+..-++-++.-+.+++.+.+-++-..+-.
T Consensus 168 ~AL~kE~~~Rt~dE~~mv~~yr~ki~aL~~aIe~Er~~m~EEAiqe~~dmsaeVlE 223 (508)
T PF00901_consen 168 RALQKESRERTQDERKMVEEYRQKIDALKNAIEVEREGMQEEAIQEIADMSAEVLE 223 (508)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcccHHHHH
No 491
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=48.84 E-value=4e+02 Score=29.21 Aligned_cols=249 Identities=15% Similarity=0.140 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 244 FRSLQRSNTELRKQLESQVLEIDKLRNENRVVVERH---------EKEMKEMKESVSISYLHQLKVLRDMLDAKQKELAE 314 (895)
Q Consensus 244 Vr~Le~e~~eLr~qLee~~~~i~~lr~Ei~~i~er~---------e~El~El~e~lrkklE~QL~ELq~kLee~ekeL~e 314 (895)
+..|.......+..|.+....++....+....+.+| ...-..+...+ .++..-|.....--......+..
T Consensus 31 l~~l~~~~~~~~~~L~e~~~~L~~E~~ed~~~r~~~g~~W~r~~S~~~~~~l~~~l-~~~~~~L~~A~~sD~~~~~~~~~ 109 (296)
T PF13949_consen 31 LQELPELSQEVRSILDEIEEMLDEEEREDEQLRAKYGERWTRPPSSELNASLRKEL-QKYREYLEQASESDSQLRSKLES 109 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTCGSS-HHHHCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCcHhhHHHHHHHH-HHHHHHHHHHHhhHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 315 ISRISAEQKHEMEDLNDRLSASM----QSCTEANEIMKSQKVTIDELKTQLDEERNLRRVDRENAEADLKAAVQKSQLET 390 (895)
Q Consensus 315 l~~~k~kLEsEleEL~~qLee~e----~~~aeL~kelkkLe~qI~ELkrqLEeEr~~~~EElEe~~~eLk~qLqkl~~El 390 (895)
....+.-|..-..+|...|-... .........++.+-.++..++ .+|......+.+.... .-+.++-..+
T Consensus 110 ~~~~l~~L~~~~~~L~~~lp~~~~~~~~~~~~~i~~L~~ll~~l~~l~----~eR~~~~~~lk~~~~~--d~i~~~l~~~ 183 (296)
T PF13949_consen 110 IEENLELLSGPIEELEASLPSSSPSDSPQVSEVIRQLRELLNKLEELK----KEREELLEQLKEKLQN--DDISKLLSEL 183 (296)
T ss_dssp HHHHHHHHTSSHHHHHHHS--B---SSGSS-HHHHHHHHHHHHHHHHH----HHHHHHHHHHHH-------HHHHHHHHH
T ss_pred HHHHHHHHcCChhhHHhhCCCCCcccccchhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhh--ccHHHHHHHh
Q ss_pred HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 002662 391 QE----KLKRLSDAASRRELEQQEVINKLQIAEKQSSLQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKK 466 (895)
Q Consensus 391 ~e----erkk~eee~~~~~eElee~l~KLeE~EKk~r~elEdLk~kLE~~ra~l~~lEkk~reLEkqLeEEk~~~~~lqk 466 (895)
.. ....+....+.........+......+..+-..+..+..++-..+ ....+......+-.
T Consensus 184 ~~~~~~~~~~lf~~eL~k~~~~~~~i~~~~~~Q~~ll~~i~~~~~~~~~~~---------------~~~~~~~~r~~~~~ 248 (296)
T PF13949_consen 184 NKNGSADFEALFEEELKKFDPLQNRIQQNLSKQEELLQEIQEANEEFAQSR---------------KSDQEQKERESALQ 248 (296)
T ss_dssp HHSSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-----------------SHHHHHHHHHHH
T ss_pred hccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------------cccHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 002662 467 RVEELENEIKKLREELESEKAAREVAWAKVSGLELDILAATRDLDFER 514 (895)
Q Consensus 467 ei~elE~EireLeeELE~ek~e~eel~d~v~~LE~ELeka~r~LE~Ek 514 (895)
.+...-..+.++...|.+=..=|.++...+..|...+..+...-..|+
T Consensus 249 ~l~~a~~~y~el~~~l~eG~~FY~~L~~~~~~l~~~~~~f~~~R~~E~ 296 (296)
T PF13949_consen 249 RLEAAYDAYKELSSNLEEGLKFYNDLLEILNKLQQKVEDFCNARREEK 296 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
No 492
>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7. The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.
Probab=48.74 E-value=1.9e+02 Score=28.82 Aligned_cols=115 Identities=14% Similarity=0.267 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH
Q 002662 249 RSNTELRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKESVSISYLHQLKVLRDMLDAKQKELAEISRISAEQKH--EM 326 (895)
Q Consensus 249 ~e~~eLr~qLee~~~~i~~lr~Ei~~i~er~e~El~El~e~lrkklE~QL~ELq~kLee~ekeL~el~~~k~kLEs--El 326 (895)
..+..|+.....+...+..+..+++.+..+....+..-.....+.+..+...++..+......+..+.....+++. ..
T Consensus 1 eai~~Lk~~~~~L~~~~~~le~~i~~~~~~~k~~~~~~~~~~A~~~lk~~k~~~k~~~~~~~~~~~l~~~~~~ie~a~~~ 80 (171)
T PF03357_consen 1 EAILKLKKTIRRLEKQIKRLEKKIKKLEKKAKKAIKKGNKERAKIYLKRKKRLEKQLEKLLNQLSNLESVLLQIETAQSN 80 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhHHH
Q 002662 327 EDLNDRLSASMQSCTEANEIMK--SQKVTIDELKTQLDE 363 (895)
Q Consensus 327 eEL~~qLee~e~~~aeL~kelk--kLe~qI~ELkrqLEe 363 (895)
..+...|......+..+.+.+. .+..-+.++...++.
T Consensus 81 ~~v~~al~~~~~~Lk~~~~~i~~~~v~~~~d~~~e~~e~ 119 (171)
T PF03357_consen 81 QQVVKALKQSSKALKKINKQINLDKVEKLMDDFQEEMED 119 (171)
T ss_dssp HHHSSS----SHHHHHHHHSTTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
No 493
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=48.74 E-value=3.9e+02 Score=29.03 Aligned_cols=100 Identities=19% Similarity=0.149 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 002662 315 ISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRRVD-RENAEADLKAAVQKSQLETQEK 393 (895)
Q Consensus 315 l~~~k~kLEsEleEL~~qLee~e~~~aeL~kelkkLe~qI~ELkrqLEeEr~~~~EE-lEe~~~eLk~qLqkl~~El~ee 393 (895)
+..+.......+.+......+++....+....+...+.+...+......+-....+. +.+...+..+.+.+++.++..+
T Consensus 34 l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~i~~~A~~eA~~~~~~i~~~A~~ea~~~~~~a~~~ie~E 113 (246)
T TIGR03321 34 MDAREKKIAGELADADTKKREAEQERREYEEKNEELDQQREVLLTKAKEEAQAERQRLLDEAREEADEIREKWQEALRRE 113 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 002662 394 LKRLSDAASRRELEQQEVINK 414 (895)
Q Consensus 394 rkk~eee~~~~~eElee~l~K 414 (895)
+.+...+.......+--.+..
T Consensus 114 ~~~a~~~l~~ei~~la~~~A~ 134 (246)
T TIGR03321 114 QAALSDELRRRTGAEVFAIAR 134 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
No 494
>PF12004 DUF3498: Domain of unknown function (DUF3498); InterPro: IPR021887 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 433 to 538 amino acids in length. This domain is found associated with PF00616 from PFAM, PF00168 from PFAM. This domain has two conserved sequence motifs: DLQ and PLSFQNP. ; PDB: 3BXJ_B.
Probab=48.70 E-value=5.8 Score=47.27 Aligned_cols=129 Identities=12% Similarity=0.177 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 240 SLDDFRSLQRSNTELRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKESVSISYLHQLKVLRDMLDAKQKELAEISRIS 319 (895)
Q Consensus 240 ~ld~Vr~Le~e~~eLr~qLee~~~~i~~lr~Ei~~i~er~e~El~El~e~lrkklE~QL~ELq~kLee~ekeL~el~~~k 319 (895)
..++++.++.++..|++.|.....++++.++. |..|=+.++.-|-+.+..|++-++++
T Consensus 367 ~~~~~e~YEqEI~~LkErL~~S~rkLeEyErr----------------------Ll~QEqqt~Kll~qyq~RLedSE~RL 424 (495)
T PF12004_consen 367 SMKEVEKYEQEIQSLKERLRMSHRKLEEYERR----------------------LLSQEQQTQKLLLQYQARLEDSEERL 424 (495)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHhHHHHHHHHHHHHHhhhhhHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 320 AEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRRVDRENAEADLKAAVQKSQLETQEKLKRL 397 (895)
Q Consensus 320 ~kLEsEleEL~~qLee~e~~~aeL~kelkkLe~qI~ELkrqLEeEr~~~~EElEe~~~eLk~qLqkl~~El~eerkk~ 397 (895)
.+++. +-..+|.....++--.+.++++=...|..+- +.+...++.-++++..|.++..+|..-+.+.+.+|
T Consensus 425 r~QQ~---eKd~qmksII~RL~~vEeELrre~~~m~~~~----~~kqrii~aQ~~~i~~Ldaan~Rl~sal~~lk~ry 495 (495)
T PF12004_consen 425 RRQQE---EKDSQMKSIISRLMAVEEELRREHAEMQAVL----DHKQRIIDAQEKRIAALDAANSRLMSALTQLKERY 495 (495)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred HHHhh---hhHHHHHHHHhhhhhhhhhhhhhHHHHhccc----ccchHHHHHhhhhccccccccccccccccccccCC
No 495
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=48.36 E-value=3.3e+02 Score=28.15 Aligned_cols=100 Identities=9% Similarity=0.110 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 002662 315 ISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRRVD-RENAEADLKAAVQKSQLETQEK 393 (895)
Q Consensus 315 l~~~k~kLEsEleEL~~qLee~e~~~aeL~kelkkLe~qI~ELkrqLEeEr~~~~EE-lEe~~~eLk~qLqkl~~El~ee 393 (895)
+..+.......+.+.......+.....+..+.+...+.+..++......+-....+. +.+...+...-++.++.++..+
T Consensus 53 l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~L~~A~~ea~~ii~~A~~~ae~~~~~il~~A~~ea~~~~~~a~~~ie~E 132 (184)
T CHL00019 53 LDNRKQTILNTIRNSEERREEAIEKLEKARARLRQAELEADEIRVNGYSEIEREKENLINQAKEDLERLENYKNETIRFE 132 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 002662 394 LKRLSDAASRRELEQQEVINK 414 (895)
Q Consensus 394 rkk~eee~~~~~eElee~l~K 414 (895)
+.+...+....+..+--....
T Consensus 133 k~~a~~~l~~ei~~lav~~A~ 153 (184)
T CHL00019 133 QQRAINQVRQQVFQLALQRAL 153 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
No 496
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=48.16 E-value=1e+02 Score=33.92 Aligned_cols=64 Identities=13% Similarity=0.234 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 442 TSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAREVAWAKVSGLELDILA 505 (895)
Q Consensus 442 ~lEkk~reLEkqLeEEk~~~~~lqkei~elE~EireLeeELE~ek~e~eel~d~v~~LE~ELek 505 (895)
..+.++..|++++.--.....+++.++..++.++.+|+-.+|.+.-+.+.+.++-+.+-.+|..
T Consensus 37 ~~~~r~~~le~~~~~~~~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~ 100 (263)
T PRK10803 37 SVEDRVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDS 100 (263)
T ss_pred chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
No 497
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=48.13 E-value=7.1e+02 Score=31.92 Aligned_cols=319 Identities=14% Similarity=0.151 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 242 DDFRSLQRSNTELRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKESVSISYLHQLKVLRDMLDAKQKELAEISRISAE 321 (895)
Q Consensus 242 d~Vr~Le~e~~eLr~qLee~~~~i~~lr~Ei~~i~er~e~El~El~e~lrkklE~QL~ELq~kLee~ekeL~el~~~k~k 321 (895)
.+++-+......|.....+.-...+.|..+. .++..+..+-+.. ..-+..+..+...+--++--+.-....-.-
T Consensus 839 ~dfe~IIed~dc~~eit~ee~eqkElLele~-----E~egkldglieak-eaeenkihK~egEltcaE~i~q~kdee~al 912 (1424)
T KOG4572|consen 839 RDFEIIIEDGDCLKEITKEEGEQKELLELEL-----ENEGKLDGLIEAK-EAEENKIHKKEGELTCAECIKQMKDEEEAL 912 (1424)
T ss_pred HHHHHHHhhhHHHHHHHHHhhhhHHHHHHhh-----hcccccchHHHHH-HHHhhHHHHhhhhhHHHHHHHHcchHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----H
Q 002662 322 QKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRRVDRENAEADLKAAVQKSQLETQEKLK-----R 396 (895)
Q Consensus 322 LEsEleEL~~qLee~e~~~aeL~kelkkLe~qI~ELkrqLEeEr~~~~EElEe~~~eLk~qLqkl~~El~eerk-----k 396 (895)
...+-......+++....+.++...+.++.-.+++++ ....--.+.+.+--.+..+.+++...++.+-.. +
T Consensus 913 tdhekeasicl~eeKDqei~EleailekQNca~eeak----qn~eis~Ed~kkLhaE~daeLe~~~ael~eleqk~le~~ 988 (1424)
T KOG4572|consen 913 TDHEKEASICLIEEKDQEIEELEAILEKQNCAHEEAK----QNDEISEEDKKKLHAEIDAELEKEFAELIELEQKALECK 988 (1424)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhHHHHh----hcCcccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 002662 397 LSDAASRRELEQQEVINKLQIAEKQSSLQVESLKLKLDETRERLVTS-DNKVRLLETQVCKEQNVSASWKKRVEELENEI 475 (895)
Q Consensus 397 ~eee~~~~~eElee~l~KLeE~EKk~r~elEdLk~kLE~~ra~l~~l-Ekk~reLEkqLeEEk~~~~~lqkei~elE~Ei 475 (895)
..+...+.+.+++-.+..+.-....+..+++.+-.+++.+.+.+... +.++..++=..-++..-+.++.-+....++++
T Consensus 989 eDea~aRh~kefE~~mrdhrselEe~kKe~eaiineiee~eaeIiQekE~el~e~efka~d~Sd~r~kie~efAa~eaem 1068 (1424)
T KOG4572|consen 989 EDEAFARHEKEFEIEMRDHRSELEEKKKELEAIINEIEELEAEIIQEKEGELIEDEFKALDESDPRAKIEDEFAAIEAEM 1068 (1424)
T ss_pred hhHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHhhhccccCcchhHHHHHHHHHhhh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHH
Q 002662 476 KKLREELESEKAAREVAWAKVSGLELDILAATRDLDFERRRLKAARERIMLRETQLRAFY--STTEEISVLFARQQEQLK 553 (895)
Q Consensus 476 reLeeELE~ek~e~eel~d~v~~LE~ELeka~r~LE~Ek~rLq~~rErL~~~eqqlkaei--Ek~EEiee~rk~~~~qLr 553 (895)
.++.--+..-++...+..+.+ ++.+++....+.+.-...++..-+.-++-+-..+..+ ++.-.+.+.|..+...--
T Consensus 1069 deik~~~~edrakqkei~k~L--~ehelenLrnEieklndkIkdnne~~QVglae~nslmTiekDmcaselfneheeeS~ 1146 (1424)
T KOG4572|consen 1069 DEIKDGKCEDRAKQKEIDKIL--KEHELENLRNEIEKLNDKIKDNNEGDQVGLAEENSLMTIEKDMCASELFNEHEEESG 1146 (1424)
T ss_pred hhhhhhhhhhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhcCCCcchHHHHHhccCCccchhHHHHHHHHHhhhhcc
Q ss_pred HHhhhhhhhhhhccccccc
Q 002662 554 AMQKTLEDEENYENTSVDI 572 (895)
Q Consensus 554 ~LQ~~LEdeek~~s~~lel 572 (895)
.+...+..-.++-..++++
T Consensus 1147 ifdaa~nKiakiHe~AfEi 1165 (1424)
T KOG4572|consen 1147 IFDAAGNKIAKIHEIAFEI 1165 (1424)
T ss_pred hHHHHHHHHHHHHHHHHHH
No 498
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=48.08 E-value=2.3e+02 Score=26.33 Aligned_cols=77 Identities=16% Similarity=0.305 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 245 RSLQRSNTELRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKESVSISYLHQLKVLRDMLDAKQKELAEISRISAEQKH 324 (895)
Q Consensus 245 r~Le~e~~eLr~qLee~~~~i~~lr~Ei~~i~er~e~El~El~e~lrkklE~QL~ELq~kLee~ekeL~el~~~k~kLEs 324 (895)
+..+..+..+-.+|-.+-.. +|+.....+......+++.++.+|+.++....++...|..++.....
T Consensus 11 ~ev~~~ve~vA~eLh~~Yss-------------KHE~KV~~LKksYe~rwek~v~~L~~e~~~l~~E~e~L~~~l~~e~~ 77 (87)
T PF12709_consen 11 KEVEKAVEKVARELHALYSS-------------KHETKVKALKKSYEARWEKKVDELENENKALKRENEQLKKKLDTERE 77 (87)
T ss_pred HHHHHHHHHHHHHHHHHHhh-------------HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHH
Q 002662 325 EMEDLNDRLS 334 (895)
Q Consensus 325 EleEL~~qLe 334 (895)
+-..|-..|+
T Consensus 78 Ek~~Ll~ll~ 87 (87)
T PF12709_consen 78 EKQELLKLLE 87 (87)
T ss_pred HHHHHHHhhC
No 499
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=48.02 E-value=1.6e+02 Score=32.06 Aligned_cols=83 Identities=13% Similarity=0.142 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHHH
Q 002662 448 RLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAREVAWAKVSGLELDIL-AATRDLDFERRRLKAARERIML 526 (895)
Q Consensus 448 reLEkqLeEEk~~~~~lqkei~elE~EireLeeELE~ek~e~eel~d~v~~LE~ELe-ka~r~LE~Ek~rLq~~rErL~~ 526 (895)
++|.+.+-+....+ .+--+-.+.+++-+.+.++.++ +.++...|...+. ++...|..++.+|+.....|+.
T Consensus 164 ~eLqkr~~~v~~l~---~q~~k~~~~qv~~in~qlErLR-----L~krrlQl~g~Ld~~~q~~~~ae~seLq~r~~~l~~ 235 (289)
T COG4985 164 RELQKRLLEVETLR---DQVDKMVEQQVRVINSQLERLR-----LEKRRLQLNGQLDDEFQQHYVAEKSELQKRLAQLQT 235 (289)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHhhhhH
Q 002662 527 RETQLRAFYSTT 538 (895)
Q Consensus 527 ~eqqlkaeiEk~ 538 (895)
.+..+++++++.
T Consensus 236 ~L~~L~~e~~r~ 247 (289)
T COG4985 236 ELDALRAELERQ 247 (289)
T ss_pred HHHHHhhhhhhc
No 500
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=48.01 E-value=1.7e+02 Score=27.83 Aligned_cols=66 Identities=20% Similarity=0.313 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002662 430 KLKLDETRERLVTSDNKVRLLETQVCKE--QNVSASWKKRVEELENEIKKLREELESEKAAREVAWAK 495 (895)
Q Consensus 430 k~kLE~~ra~l~~lEkk~reLEkqLeEE--k~~~~~lqkei~elE~EireLeeELE~ek~e~eel~d~ 495 (895)
+.+++.+.+.+...++++..++.+++.. +..+..++..+.++..+++.+...|..+....+=+.++
T Consensus 34 ~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lLlE~ 101 (106)
T PF10805_consen 34 REDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLDLLLEN 101 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Done!