Query 002662
Match_columns 895
No_of_seqs 287 out of 1069
Neff 5.8
Searched_HMMs 29240
Date Tue Mar 26 21:05:53 2013
Command hhsearch -i /local_scratch/syshi/lefta3m2/002662.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H2_68-71//hhsearch_pdb/002662hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gxc_A CHK2, CDS1, serine/thre 1.0 1 1 153.7 12.6 113 73-205 24-145 (149)
2 3elv_A PRE-mRNA leakage protei 1.0 1 1 141.8 8.6 133 56-200 43-204 (205)
3 1lgp_A Cell cycle checkpoint p 1.0 1 1 140.7 11.3 109 77-202 2-112 (116)
4 3i6u_A CDS1, serine/threonine- 1.0 1 1 139.2 11.6 112 74-205 5-125 (419)
5 1qu5_A Protein kinase SPK1; FH 1.0 1 1 138.3 7.0 126 66-199 16-145 (182)
6 4h87_A Kanadaptin; FHA domain 1.0 1 1 137.3 14.4 120 66-199 8-129 (130)
7 2jqj_A DNA damage response pro 1.0 1 1 136.6 13.8 115 74-205 13-128 (151)
8 3els_A PRE-mRNA leakage protei 1.0 1 1 136.5 9.1 127 61-199 1-156 (158)
9 1dmz_A Protein (protein kinase 1.0 1 1 131.4 10.6 117 76-198 2-122 (158)
10 1g3g_A Protien kinase SPK1; FH 1.0 1 1 127.5 12.4 118 61-200 18-147 (164)
No 1
>1gxc_A CHK2, CDS1, serine/threonine-protein kinase CHK2; phosphoprotein-binding domain, checkpoint kinase, transferase; HET: TPO; 2.7A {Homo sapiens} SCOP: b.26.1.2
Probab=1.00 E-value=1 Score=153.72 Aligned_cols=113 Identities=24% Similarity=0.340 Sum_probs=91.7
Q ss_pred CCCCCCEEEEEEECCCCCCCCCCEEEEECCCCEEECCCCCCCCEECCCCC---------CCCCCEEEEEECCCCCCCCCC
Q ss_conf 88988408999521662235764048835992584489999851218975---------443443789831578989999
Q 002662 73 NYDPKVWGVLTAISNNARKRHQGINILLTADEHCIGRLVDDAHFQIDSNA---------VSANHCKIYRKKFASGDLDHS 143 (895)
Q Consensus 73 ~~~~~~WG~L~~i~~~~~~~~~~~~i~L~~~~~~iGR~~~~~d~~i~~~~---------IS~~Hc~I~~~~~~~~~~~~~ 143 (895)
++.+.+||+|+++.... ..+.|....++|||.+.| |++|+++. ||+.||.|++....
T Consensus 24 ~~~~~~w~~L~~~~~~~------~~i~L~~~~~~IGR~~~~-di~l~d~~~~~~~~~~~VSr~Ha~I~~~~~~------- 89 (149)
T 1gxc_A 24 EPTPAPWARLWALQDGF------ANLECVNDNYWFGRDKSC-EYCFDEPLLKRTDKYRTYSKKHFRIFREVGP------- 89 (149)
T ss_dssp -----CCEEEEECSTTC------CCEEECSSEEEEESSTTC-SEECCCGGGGGSSGGGGSCTTCEEEEEEECT-------
T ss_pred CCCCCEEEEEEECCCCC------CEEEECCCCEEECCCCCC-CEEECCCCCCCCCCCCCCCHHHEEEEEECCC-------
T ss_conf 78887469999827997------669977988895689988-9897885334545578595015499998997-------
Q ss_pred CCCCCEEEEEECCCCCEEECCCCCCCCCCCCCCCCCCEEEECCCCCCCCCEEEEECCCCCCC
Q ss_conf 99974189985787752446820358997422579999997259998720899973346679
Q 002662 144 PSGCSSVCLKDTSTNGTYVNCERFKKNSSEVNIDHGDIISFAAPPQHDLAFAFVFRDVSRST 205 (895)
Q Consensus 144 ~~~~~~~~L~D~StNGTfvN~~ki~kng~~~~L~~GDvIsLa~~p~~~~af~FVFgdtlv~~ 205 (895)
.+...|||.|.|+||||||+.+|.+ +..+.|.+||+|.|+... .+.|+|.+.....
T Consensus 90 -~~~~~~~i~D~StNGT~VNg~~i~~-~~~~~L~~GD~I~lG~~~----~~~f~f~d~~~~~ 145 (149)
T 1gxc_A 90 -KNSYIAYIEDHSGNGTFVNTELVGK-GKRRPLNNNSEIALSLSR----NKVFVFFDLTVDD 145 (149)
T ss_dssp -TSSEEEEEEECCSSCEEETTEECCT-TCEEECCTTEEEEESSTT----CEEEEEEETTCC-
T ss_pred -CCEEEEEEEECCCCCEEECCEECCC-CCEEECCCCCEEEECCCC----CEEEEEEECCCCC
T ss_conf -8605799999998986999999789-983888899999987887----7499999799555
No 2
>3elv_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 2.40A {Saccharomyces cerevisiae} PDB: 2jkd_A
Probab=1.00 E-value=1 Score=141.80 Aligned_cols=133 Identities=17% Similarity=0.188 Sum_probs=95.3
Q ss_pred CCCHHHHHCCCCCCCCCCCCCCCEE-------------EEEEECCCCCCCCCCEEEEEC-CCCEEECCCCC---------
Q ss_conf 5311222001278888888988408-------------999521662235764048835-99258448999---------
Q 002662 56 SHFVFWVAGTYAAQPLQNYDPKVWG-------------VLTAISNNARKRHQGINILLT-ADEHCIGRLVD--------- 112 (895)
Q Consensus 56 ~~~~~~va~~~~~qp~~~~~~~~WG-------------~L~~i~~~~~~~~~~~~i~L~-~~~~~iGR~~~--------- 112 (895)
+..+.+|++++.+||.+..|...|. ..+.... .........+.|. ...|+|||.+.
T Consensus 43 ~n~~~gv~lky~eP~~a~~P~~~w~~~~~~~~~~~~~~L~v~k~g-~k~~~~i~~~~L~~~s~y~IGR~~~~~~~~~~~~ 121 (205)
T 3elv_A 43 SNNKEGIALKHVEPQDAISPDNYMDMLGLEARDRTMYELVIYRKN-DKDKGPWKRYDLNGRSCYLVGRELGHSLDTDLDD 121 (205)
T ss_dssp ---------CCCCCTTBCCHHHHHHHTTCCGGGSCCEEEEEEEGG-GCTTCCSEEEECSSCSEEEEEECCCC--------
T ss_pred HCCCCCEEEECCCCCCCCCCCHHHHHCCCCCCCCCCEEEEEEECC-CCCCCCCEEEEECCCCCEEECCCCCCCCCCCCCC
T ss_conf 156663797236998645984677215566345772689999699-7665310379935887435322355454433322
Q ss_pred -----CCCEECCCCCCCCCCEEEEEECCCCCCCCCCCCCCCEEEEEEC-CCCCEEECCCCCCCCCCCCCCCCCCEEEECC
Q ss_conf -----9851218975443443789831578989999999741899857-8775244682035899742257999999725
Q 002662 113 -----DAHFQIDSNAVSANHCKIYRKKFASGDLDHSPSGCSSVCLKDT-STNGTYVNCERFKKNSSEVNIDHGDIISFAA 186 (895)
Q Consensus 113 -----~~d~~i~~~~IS~~Hc~I~~~~~~~~~~~~~~~~~~~~~L~D~-StNGTfvN~~ki~kng~~~~L~~GDvIsLa~ 186 (895)
.||++|+++.||+.||.|.+.... +...|||.|. |+|||||||.+|.+ ..++.|.+||+|.|+.
T Consensus 122 ~~e~~~cDIvL~dp~VSR~HA~I~~~~~~---------~~~~~~l~DLgStNGTfVNG~rI~~-~~~~~L~~GD~I~fG~ 191 (205)
T 3elv_A 122 RTEIVVADIGIPEETSSKQHCVIQFRNVR---------GILKCYVMDLDSSNGTCLNNVVIPG-ARYIELRSGDVLTLSE 191 (205)
T ss_dssp -CCCCCCSEEECCTTSCTTCEEEEEEEET---------TEEEEEEEECSCSSCCEETTEECCB-TSCEECCTTCEEESSS
T ss_pred CCCCCCCEEEECCCCCCCCCEEEEEECCC---------CCEEEEEEECCCCCCCEECCEECCC-CCEEECCCCCEEEECC
T ss_conf 35674320896999987201899996689---------8126999969989988699999889-9615879999999798
Q ss_pred CCCCCCCEEEEECC
Q ss_conf 99987208999733
Q 002662 187 PPQHDLAFAFVFRD 200 (895)
Q Consensus 187 ~p~~~~af~FVFgd 200 (895)
.+. ...+.|+|..
T Consensus 192 s~r-~~~~el~f~~ 204 (205)
T 3elv_A 192 FEE-DNDYELIFMN 204 (205)
T ss_dssp SGG-GCSEEEEEEE
T ss_pred CCC-CCCEEEEEEE
T ss_conf 887-8986999983
No 3
>1lgp_A Cell cycle checkpoint protein CHFR; FHA, tungstate, domain swapping; 2.00A {Homo sapiens} SCOP: b.26.1.2 PDB: 1lgq_A
Probab=1.00 E-value=1 Score=140.72 Aligned_cols=109 Identities=28% Similarity=0.466 Sum_probs=87.7
Q ss_pred CCEEEEEEECCCCCCCCCCEEEEECCCCEEECCCCCCCCEECCCC-CCCCCCEEEEEECCCCCCCCCCCCCCCEEEEEEC
Q ss_conf 840899952166223576404883599258448999985121897-5443443789831578989999999741899857
Q 002662 77 KVWGVLTAISNNARKRHQGINILLTADEHCIGRLVDDAHFQIDSN-AVSANHCKIYRKKFASGDLDHSPSGCSSVCLKDT 155 (895)
Q Consensus 77 ~~WG~L~~i~~~~~~~~~~~~i~L~~~~~~iGR~~~~~d~~i~~~-~IS~~Hc~I~~~~~~~~~~~~~~~~~~~~~L~D~ 155 (895)
.+||+|+++.... .+..+.|....++|||.+.| |++|++. .||+.||.|++.... ..|||.|.
T Consensus 2 ~~wg~L~~~~~~~----~~~~~~l~~~~~~iGR~~~~-di~l~~~~~vSr~Ha~i~~~~~~-----------~~~~l~D~ 65 (116)
T 1lgp_A 2 QPWGRLLRLGAEE----GEPHVLLRKREWTIGRRRGC-DLSFPSNKLVSGDHCRIVVDEKS-----------GQVTLEDT 65 (116)
T ss_dssp CCCEEECCTTCCS----SSCCEEECSSEEEEESSTTS-SEECTTCTTSCTTCEEEEECTTT-----------CCEEEEEC
T ss_pred CCEEEEEEECCCC----CCCEEEECCCCEEECCCCCC-CEEECCCCCCCHHHEEEEEECCC-----------CEEEEEEC
T ss_conf 8779999947988----76689989988897899788-88947999978427399998889-----------81999989
Q ss_pred CCCCEEECCCCCCCCCCCCCCCCCCEEEECCCCCC-CCCEEEEECCCC
Q ss_conf 87752446820358997422579999997259998-720899973346
Q 002662 156 STNGTYVNCERFKKNSSEVNIDHGDIISFAAPPQH-DLAFAFVFRDVS 202 (895)
Q Consensus 156 StNGTfvN~~ki~kng~~~~L~~GDvIsLa~~p~~-~~af~FVFgdtl 202 (895)
|+||||||+.+|.+ +....|.+||+|.|+..+.. ...+.|+|.+..
T Consensus 66 S~NGt~vng~~l~~-~~~~~L~~GD~i~~G~~~~~~~~~~~f~f~~~~ 112 (116)
T 1lgp_A 66 STSGTVINKLKVVK-KQTCPLQTGDVIYLVYRKNEPEHNVAYLYESLS 112 (116)
T ss_dssp SSSCCCCCCCCCCC-SSCCCCCTTCEEEEECCSSCGGGCEEEECCCSC
T ss_pred CCCCCEECCEECCC-CCCEECCCCCEEEEECCCCCCCCEEEEEEECCC
T ss_conf 92985799999579-971898899999994568888850999997134
No 4
>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A
Probab=1.00 E-value=1 Score=139.22 Aligned_cols=112 Identities=24% Similarity=0.349 Sum_probs=89.5
Q ss_pred CCCCCEEEEEEECCCCCCCCCCEEEEECCCCEEECCCCCCCCEECCCCCC---------CCCCEEEEEECCCCCCCCCCC
Q ss_conf 89884089995216622357640488359925844899998512189754---------434437898315789899999
Q 002662 74 YDPKVWGVLTAISNNARKRHQGINILLTADEHCIGRLVDDAHFQIDSNAV---------SANHCKIYRKKFASGDLDHSP 144 (895)
Q Consensus 74 ~~~~~WG~L~~i~~~~~~~~~~~~i~L~~~~~~iGR~~~~~d~~i~~~~I---------S~~Hc~I~~~~~~~~~~~~~~ 144 (895)
+.+.+||+|+++..+. ..+.|..+.++|||.+.| |++++++.| |++||.|++....
T Consensus 5 ~~~~~~g~l~~~~~~~------~~~~l~~~~~~iGR~~~~-~~~~~~~~~~~~~~~~~vS~~H~~i~~~~~~-------- 69 (419)
T 3i6u_A 5 PTPAPWARLWALQDGF------ANLECVNDNYWFGRDKSC-EYCFDEPLLKRTDKYRTYSKKHFRIFREVGP-------- 69 (419)
T ss_dssp -CCCCSEEEEECSSSS------CCEEECSSEEEEESSTTS-SEETTCTTGGGCSGGGGSCTTCEEEECCEET--------
T ss_pred CCCCCCEEEEECCCCC------CCEEECCCCEEECCCCCC-CEEECCCCCCCCCCCCCCCCCCEEEEEECCC--------
T ss_conf 5677755864168998------726746888785179866-8897886445444336534525699997588--------
Q ss_pred CCCCEEEEEECCCCCEEECCCCCCCCCCCCCCCCCCEEEECCCCCCCCCEEEEECCCCCCC
Q ss_conf 9974189985787752446820358997422579999997259998720899973346679
Q 002662 145 SGCSSVCLKDTSTNGTYVNCERFKKNSSEVNIDHGDIISFAAPPQHDLAFAFVFRDVSRST 205 (895)
Q Consensus 145 ~~~~~~~L~D~StNGTfvN~~ki~kng~~~~L~~GDvIsLa~~p~~~~af~FVFgdtlv~~ 205 (895)
.+..++||.|.|+||||||+.++++ +..+.|.+++.|.|+... ...|+|.+....+
T Consensus 70 ~~~~~~~i~D~S~nGt~vn~~~~~~-~~~~~l~~~d~i~~~~~~----~~~~~~~~~~~~~ 125 (419)
T 3i6u_A 70 KNSYIAYIEDHSGNGTFVNTELVGK-GKRRPLNNNSEIALSLSR----NKVFVFFDLTVDD 125 (419)
T ss_dssp TTEECCEEEECCSSCEEETTEECCT-TCEEECCTTEEEEESSTT----CEEEEEEESCSSC
T ss_pred CCCEEEEEEECCCCCCEECCCCCCC-CCCCCCCCCCEEEEECCC----CCEEEEECCCCCC
T ss_conf 9714799987786774588102068-975448888876451266----6158982356552
No 5
>1qu5_A Protein kinase SPK1; FHA, RAD53, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2
Probab=1.00 E-value=1 Score=138.30 Aligned_cols=126 Identities=21% Similarity=0.338 Sum_probs=88.1
Q ss_pred CCCCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEECCCC--EEECCCCCCCCEECCCCCCCCCCEEEEEECCCCCC--CC
Q ss_conf 278888888988408999521662235764048835992--58448999985121897544344378983157898--99
Q 002662 66 YAAQPLQNYDPKVWGVLTAISNNARKRHQGINILLTADE--HCIGRLVDDAHFQIDSNAVSANHCKIYRKKFASGD--LD 141 (895)
Q Consensus 66 ~~~qp~~~~~~~~WG~L~~i~~~~~~~~~~~~i~L~~~~--~~iGR~~~~~d~~i~~~~IS~~Hc~I~~~~~~~~~--~~ 141 (895)
..-+|.....++.|..|.++.... .+..|.|.... ++|||.+.| |++|+++.||+.||.|++....... ..
T Consensus 16 ~~~~~~~~~~~g~~l~L~~~~~~~----~~~~i~L~~~~~~~~IGR~~~~-di~l~d~~VSr~HA~I~~~~~~~g~~~~e 90 (182)
T 1qu5_A 16 ENVKSSKKKGNGRFLTLKPLPDSI----IQESLEIQQGVNPFFIGRSEDC-NCKIEDNRLSRVHCFIFKKRHAVGKSMYE 90 (182)
T ss_dssp GGSSCSCCSSSSCCEEECCCTTSS----SCSCCCBTTCCSSEEESSSTTS-SSCCCCTTSCSSCEEEEEECCCCCSSCCS
T ss_pred HHCEECCCCCCCCEEEEEECCCCC----CCEEEEECCCCCEEEECCCCCC-CEEECCCCCCHHHEEEEEECCCCCCCCCC
T ss_conf 670153458986289998479877----5408997689814997789888-78979988396795999935766543223
Q ss_pred CCCCCCCEEEEEECCCCCEEECCCCCCCCCCCCCCCCCCEEEECCCCCCCCCEEEEEC
Q ss_conf 9999974189985787752446820358997422579999997259998720899973
Q 002662 142 HSPSGCSSVCLKDTSTNGTYVNCERFKKNSSEVNIDHGDIISFAAPPQHDLAFAFVFR 199 (895)
Q Consensus 142 ~~~~~~~~~~L~D~StNGTfvN~~ki~kng~~~~L~~GDvIsLa~~p~~~~af~FVFg 199 (895)
.+..+...|||.|.|+|||||||.+|.+ +....|.+||+|.|+.++.- .+.|.|.
T Consensus 91 ~~~~~~~~~~l~DlStNGT~VNg~ri~~-~~~~~L~~GD~I~l~~d~~G--~~~l~f~ 145 (182)
T 1qu5_A 91 SPAQGLDDIWYCHTGTNVSYLNNNRMIQ-GTKFLLQDGDEIKIIWDKNN--KFVIGFK 145 (182)
T ss_dssp SCCCSCCEEEECCCSSSCCEETTEECCS-SEEEECCTTBCCEEEEEGGG--TEEEECC
T ss_pred CCCCCCCEEEEEECCCCCEEECCEECCC-CCCEECCCCCEEEEEECCCC--CEEEEEE
T ss_conf 4446655099998995884899999679-96568489999999876899--8899999
No 6
>4h87_A Kanadaptin; FHA domain of PF00498, mRNA processing, nucleus, structural joint center for structural genomics, JCSG, protein structu initiative; HET: SO4; 1.55A {Homo sapiens}
Probab=1.00 E-value=1 Score=137.34 Aligned_cols=120 Identities=19% Similarity=0.252 Sum_probs=85.1
Q ss_pred CCCCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEECC-CCEEECCCCCCCCEECCCCCCCCCCEEEEEECCCCCCCCCCC
Q ss_conf 2788888889884089995216622357640488359-925844899998512189754434437898315789899999
Q 002662 66 YAAQPLQNYDPKVWGVLTAISNNARKRHQGINILLTA-DEHCIGRLVDDAHFQIDSNAVSANHCKIYRKKFASGDLDHSP 144 (895)
Q Consensus 66 ~~~qp~~~~~~~~WG~L~~i~~~~~~~~~~~~i~L~~-~~~~iGR~~~~~d~~i~~~~IS~~Hc~I~~~~~~~~~~~~~~ 144 (895)
|.+||-+.+++.+|...+..+... ...+.|.. ..|+|||.+.| |++|+++.||+.||.|+++.... .... .
T Consensus 8 y~~P~wa~~p~~~~~L~v~k~g~~-----~~~~~L~~~~~~~IGR~~~~-di~l~~~~VSr~HA~I~~r~~~~-~~~~-~ 79 (130)
T 4h87_A 8 YQEPPWGGPATAPYSLETLKGGTI-----LGTRSLKGTSYCLFGRLSGC-DVCLEHPSVSRYHAVLQHRASGP-DGEC-D 79 (130)
T ss_dssp CCCCTTBCCCCSCCEEEEEETTEE-----EEEEECTTCSEEEEESSTTS-SEECCCTTSCSSCEEEEEBCCCC-CC----
T ss_pred CCCCCCCCCCCCCEEEEEEECCEE-----EEEEEECCCCEEEECCCCCC-CEEECCCCCCHHCEEEEEECCCC-CCCE-E
T ss_conf 878887668999979999989945-----11698289824998688478-99968998150247999823667-4302-1
Q ss_pred CCCCEEEEEEC-CCCCEEECCCCCCCCCCCCCCCCCCEEEECCCCCCCCCEEEEEC
Q ss_conf 99741899857-87752446820358997422579999997259998720899973
Q 002662 145 SGCSSVCLKDT-STNGTYVNCERFKKNSSEVNIDHGDIISFAAPPQHDLAFAFVFR 199 (895)
Q Consensus 145 ~~~~~~~L~D~-StNGTfvN~~ki~kng~~~~L~~GDvIsLa~~p~~~~af~FVFg 199 (895)
.....|||.|. |+||||||+.+|.+ +.++.|.+||+|.|+... ..|||+
T Consensus 80 ~~~~~~~l~Dl~StNGT~vNg~ri~~-~~~~~L~~GD~I~~G~st-----r~yvl~ 129 (130)
T 4h87_A 80 SNGPGFYLYDLGSTHGTFLNKTRIPP-RTYCRVHVGHVVRFGGST-----RLFILQ 129 (130)
T ss_dssp ---CCEEEEECSCSSCEEETTEECCT-TCCEECCTTCEEEETTCS-----EEEEEE
T ss_pred CCCCCCEEEECCCCCCEEECCEECCC-CCEEECCCCCEEEECCCE-----EEEEEC
T ss_conf 13783268528998756899999889-951699999999988963-----899980
No 7
>2jqj_A DNA damage response protein kinase DUN1; protein/phosphopeptide, cell cycle; HET: DNA; NMR {Saccharomyces cerevisiae} PDB: 2jql_A*
Probab=1.00 E-value=1 Score=136.55 Aligned_cols=115 Identities=20% Similarity=0.292 Sum_probs=87.0
Q ss_pred CCCCCEEEEEEECCCCCCCCCCEEEEEC-CCCEEECCCCCCCCEECCCCCCCCCCEEEEEECCCCCCCCCCCCCCCEEEE
Q ss_conf 8988408999521662235764048835-992584489999851218975443443789831578989999999741899
Q 002662 74 YDPKVWGVLTAISNNARKRHQGINILLT-ADEHCIGRLVDDAHFQIDSNAVSANHCKIYRKKFASGDLDHSPSGCSSVCL 152 (895)
Q Consensus 74 ~~~~~WG~L~~i~~~~~~~~~~~~i~L~-~~~~~iGR~~~~~d~~i~~~~IS~~Hc~I~~~~~~~~~~~~~~~~~~~~~L 152 (895)
.+..+||+|+.+..+. +..+.|. ...++|||.+.| |++|.++.||+.||.|++....... .....|||
T Consensus 13 ~~~~~~~~L~~~~~~~-----g~~~~l~~~~~~~IGR~~~~-di~l~d~~VSr~Ha~I~~~~~~~~~-----~~~~~~~l 81 (151)
T 2jqj_A 13 SEYTCLGHLVNLIPGK-----EQKVEITNRNVTTIGRSRSC-DVILSEPDISTFHAEFHLLQMDVDN-----FQRNLINV 81 (151)
T ss_dssp SSCCEEEEEEEEETTE-----EEEEEEECCSCEEEESSTTS-SEECCCTTCCTTSEEEEEEEEEETT-----EEEEEEEE
T ss_pred CCCCCEEEEEEECCCC-----CEEEEECCCCEEEECCCCCC-CEEECCCCCCCCCCEEEEECCCCCC-----CCCCEEEE
T ss_conf 8999669999965999-----50899748982896999889-9997998876005799996144776-----76887999
Q ss_pred EECCCCCEEECCCCCCCCCCCCCCCCCCEEEECCCCCCCCCEEEEECCCCCCC
Q ss_conf 85787752446820358997422579999997259998720899973346679
Q 002662 153 KDTSTNGTYVNCERFKKNSSEVNIDHGDIISFAAPPQHDLAFAFVFRDVSRST 205 (895)
Q Consensus 153 ~D~StNGTfvN~~ki~kng~~~~L~~GDvIsLa~~p~~~~af~FVFgdtlv~~ 205 (895)
.|.|+|||||||.+|.+ + ...|.+||+|.|+.. ..|.|.|.......
T Consensus 82 ~DlS~NGT~VNg~~i~~-~-~~~L~~GD~I~lG~~----~~~~f~~~~~~~~~ 128 (151)
T 2jqj_A 82 IDKSRNGTFINGNRLVK-K-DYILKNGDRIVFGKS----CSFLFKYASSSSTD 128 (151)
T ss_dssp EECCSSCEEETTEECCS-S-CEEECSSEEEEETTT----EEEEEEECSSCCCC
T ss_pred EECCCCCEEECCEECCC-C-CEECCCCCEEEECCC----CEEEEEECCCCCCC
T ss_conf 99997883999999479-8-459789999998998----47999986888354
No 8
>3els_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 1.80A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=136.55 Aligned_cols=127 Identities=17% Similarity=0.215 Sum_probs=90.5
Q ss_pred HHHCCCCCCCCCCCCCCCE-------------EEEEEECCCCCCCCCCEEEEEC-CCCEEECCCCC--------------
Q ss_conf 2200127888888898840-------------8999521662235764048835-99258448999--------------
Q 002662 61 WVAGTYAAQPLQNYDPKVW-------------GVLTAISNNARKRHQGINILLT-ADEHCIGRLVD-------------- 112 (895)
Q Consensus 61 ~va~~~~~qp~~~~~~~~W-------------G~L~~i~~~~~~~~~~~~i~L~-~~~~~iGR~~~-------------- 112 (895)
+|+++|.+||.+..|...| ..++.... .........+.|. +..|+|||.+.
T Consensus 1 ~~~l~~~ep~~a~~p~~~w~~~~~~~~~~~~~~l~v~k~g-~~~~~~~~~~~L~~~~~~~IGR~~~~~~~~~~~~~n~~~ 79 (158)
T 3els_A 1 GAMGKHVEPQDAISPDNYMDMLGLEARDRTMYELVIYRKN-DKDKGPWKRYDLNGRSCYLVGRELGHSLDTDLDDRTEIV 79 (158)
T ss_dssp ----CCCCCTTBCCHHHHHHHTTCCGGGSCCEEEEEEEGG-GGGGCCSEEEECSSCSEEEEEECCCC---------CCCC
T ss_pred CCEEEECCCCCCCCCCHHHHCCCCCCCCCCCEEEEEEECC-CCCCCCCEEEEECCCCCEEECCCCCCCCCCCCCCCCCCC
T ss_conf 9246745995323985332003367455774699999699-667632038995698716763454555433333225662
Q ss_pred CCCEECCCCCCCCCCEEEEEECCCCCCCCCCCCCCCEEEEEEC-CCCCEEECCCCCCCCCCCCCCCCCCEEEECCCCCCC
Q ss_conf 9851218975443443789831578989999999741899857-877524468203589974225799999972599987
Q 002662 113 DAHFQIDSNAVSANHCKIYRKKFASGDLDHSPSGCSSVCLKDT-STNGTYVNCERFKKNSSEVNIDHGDIISFAAPPQHD 191 (895)
Q Consensus 113 ~~d~~i~~~~IS~~Hc~I~~~~~~~~~~~~~~~~~~~~~L~D~-StNGTfvN~~ki~kng~~~~L~~GDvIsLa~~p~~~ 191 (895)
.||++|+++.||+.||.|.+.... +...|||.|. |+||||||+.+|.+ +.+..|.+||+|.|+.... .
T Consensus 80 ~~Di~l~~~~VSr~HA~I~~~~~~---------~~~~~~l~Dl~StNGT~VNg~ri~~-~~~~~L~~GD~I~~G~s~~-~ 148 (158)
T 3els_A 80 VADIGIPEETSSKQHCVIQFRNVR---------GILKCYVMDLDSSNGTCLNNVVIPG-ARYIELRSGDVLTLSEFEE-D 148 (158)
T ss_dssp CCSEEECCTTSCSSCEEEEEEEET---------TEEEEEEEECSCSSCCEETTEECCT-TCCEECCTTEEEESSSCGG-G
T ss_pred CCCEECCCCCCCCCCEEEEEECCC---------CEEEEEEEECCCCCCCEECCEECCC-CCEEECCCCCEEEECCCCC-C
T ss_conf 078976999888242899998158---------8137999969988866799999679-9658837999999878988-8
Q ss_pred CCEEEEEC
Q ss_conf 20899973
Q 002662 192 LAFAFVFR 199 (895)
Q Consensus 192 ~af~FVFg 199 (895)
..+.|+|-
T Consensus 149 ~~~elvF~ 156 (158)
T 3els_A 149 NDYELIFM 156 (158)
T ss_dssp CCEEEEEE
T ss_pred CCEEEEEE
T ss_conf 97899997
No 9
>1dmz_A Protein (protein kinase SPK1); beta-sandwich, antiparallel beta-sheets, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1fhq_A 1fhr_A* 1j4k_A* 1j4l_A* 1k2m_A* 1k2n_A*
Probab=1.00 E-value=1 Score=131.36 Aligned_cols=117 Identities=21% Similarity=0.359 Sum_probs=84.1
Q ss_pred CCCEEEEEEECCCCCCCCCCEEEEECCCC--EEECCCCCCCCEECCCCCCCCCCEEEEEECCCCCC--CCCCCCCCCEEE
Q ss_conf 88408999521662235764048835992--58448999985121897544344378983157898--999999974189
Q 002662 76 PKVWGVLTAISNNARKRHQGINILLTADE--HCIGRLVDDAHFQIDSNAVSANHCKIYRKKFASGD--LDHSPSGCSSVC 151 (895)
Q Consensus 76 ~~~WG~L~~i~~~~~~~~~~~~i~L~~~~--~~iGR~~~~~d~~i~~~~IS~~Hc~I~~~~~~~~~--~~~~~~~~~~~~ 151 (895)
.+.|-.|.++.... .+..|.|.... ++|||.+.| |++|+++.||+.||.|++....... ...+..+...||
T Consensus 2 ~g~~l~L~p~~~~~----~~~~i~L~~~~~~~~IGR~~~~-di~l~d~~VSr~Ha~I~~~~~~~g~~~~~~~~~~~~~~~ 76 (158)
T 1dmz_A 2 NGRFLTLKPLPDSI----IQESLEIQQGVNPFFIGRSEDC-NCKIEDNRLSRVHCFIFKKRHAVGKSMYESPAQGLDDIW 76 (158)
T ss_dssp CSCCEEEEECTTSS----CCCCEEETTSCSCEEEESSTTS-SEECCCTTSCSSSEEEEEEECCCCCCCSSCSCSSCEEEE
T ss_pred CCEEEEEEECCCCC----CCEEEEECCCCCEEEECCCCCC-CEEECCCCCCHHHEEEEEECCCCCCCCCCCCCCCCCCEE
T ss_conf 96699998689876----5408997589845997789998-889699981868929999567665432334546554099
Q ss_pred EEECCCCCEEECCCCCCCCCCCCCCCCCCEEEECCCCCCCCCEEEEE
Q ss_conf 98578775244682035899742257999999725999872089997
Q 002662 152 LKDTSTNGTYVNCERFKKNSSEVNIDHGDIISFAAPPQHDLAFAFVF 198 (895)
Q Consensus 152 L~D~StNGTfvN~~ki~kng~~~~L~~GDvIsLa~~p~~~~af~FVF 198 (895)
|.|.|+||||||+.+|.+ +....|.+||+|.|+.++.-...+.|.+
T Consensus 77 l~DlStNGT~VNg~ri~~-~~~~~L~~GD~I~l~~d~~G~~~l~f~~ 122 (158)
T 1dmz_A 77 YCHTGTNVSYLNNNRMIQ-GTKFLLQDGDEIKIIWDKNNKFVIGFKV 122 (158)
T ss_dssp EEECSTTCCEETTEECCS-SEEEECCSSCCEESCCCTTTTCCCCEEE
T ss_pred EEECCCCCEEECCEECCC-CCEEECCCCCEEEEEECCCCCEEEEEEE
T ss_conf 998996980899999689-9508937999999965489988999999
No 10
>1g3g_A Protien kinase SPK1; FHA domain, RAD53, phosphopeptide, phosphoprotein, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1j4o_A 1j4p_A* 1j4q_A* 1k3j_A 1k3n_A* 1k3q_A* 2a0t_A* 2jqi_A*
Probab=1.00 E-value=1 Score=127.50 Aligned_cols=118 Identities=16% Similarity=0.234 Sum_probs=84.7
Q ss_pred HHHCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEECC-----------CCEEECCCCCCCCEECCCC-CCCCCCE
Q ss_conf 220012788888889884089995216622357640488359-----------9258448999985121897-5443443
Q 002662 61 WVAGTYAAQPLQNYDPKVWGVLTAISNNARKRHQGINILLTA-----------DEHCIGRLVDDAHFQIDSN-AVSANHC 128 (895)
Q Consensus 61 ~va~~~~~qp~~~~~~~~WG~L~~i~~~~~~~~~~~~i~L~~-----------~~~~iGR~~~~~d~~i~~~-~IS~~Hc 128 (895)
.+..+|... ...+.+|++|+.+.... .+..+.|.. ..++|||.+.| |++|+++ .||+.||
T Consensus 18 ~~i~~~~~e---~~~~~~~~~L~v~~G~~----~g~~~~l~~~~v~~~~~~~~~~~~IGR~~~~-di~l~d~~~vSr~Ha 89 (164)
T 1g3g_A 18 FLIEKFSQE---QIGENIVCRVICTTGQI----PIRDLSADISQVLKEKRSIKKVWTFGRNPAC-DYHLGNISRLSNKHF 89 (164)
T ss_dssp HHHHHHHCC---CCCSSCCEEEECSSSSS----CCEEECCCHHHHHHCSSSCCEEEEEESSSSS-SEECCCCTTTTSSCE
T ss_pred EEEEECCCC---CCCCCCCEEEEEECCCC----CCEEEEECCCCCCCCCCCCCCCEEECCCCCC-CEEECCCCCCCHHHE
T ss_conf 466612610---03899558999966998----8859990365433333366773897899999-989589678583377
Q ss_pred EEEEECCCCCCCCCCCCCCCEEEEEECCCCCEEECCCCCCCCCCCCCCCCCCEEEECCCCCCCCCEEEEECC
Q ss_conf 789831578989999999741899857877524468203589974225799999972599987208999733
Q 002662 129 KIYRKKFASGDLDHSPSGCSSVCLKDTSTNGTYVNCERFKKNSSEVNIDHGDIISFAAPPQHDLAFAFVFRD 200 (895)
Q Consensus 129 ~I~~~~~~~~~~~~~~~~~~~~~L~D~StNGTfvN~~ki~kng~~~~L~~GDvIsLa~~p~~~~af~FVFgd 200 (895)
.|++... ..|||.|.|+||||||+.+|.+ +....|.+||+|.|+.... ...+.|+|.-
T Consensus 90 ~I~~~~~------------g~~~l~DlS~NGT~vNg~~i~~-~~~~~L~~GD~I~iG~~~~-~~~~~f~~~~ 147 (164)
T 1g3g_A 90 QILLGED------------GNLLLNDISTNGTWLNGQKVEK-NSNQLLSQGDEITVGVGVE-SDILSLVIFI 147 (164)
T ss_dssp EEEECST------------TCEEEEECCSSCEEETTEEECT-TEEEECCTTCEEEESCSST-TSCEEEEEEE
T ss_pred EEEECCC------------CCEEEEECCCCCEEECCEECCC-CCCEECCCCCEEEECCCCC-CCCEEEEEEE
T ss_conf 9998889------------9899998898982899999589-9746918999999899888-7748999995
Done!