BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002663
(895 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3QFL|A Chain A, Coiled-Coil Domain-Dependent Homodimerization Of
Intracellular Mla Immune Receptors Defines A Minimal
Functional Module For Triggering Cell Death
Length = 115
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 60/121 (49%), Gaps = 10/121 (8%)
Query: 4 AAVNFALETLGPLLVEEIRLFGGVRKEVQSIKSELESLRSFLKDADTRAAVXXXXXXXXX 63
AA++ + LG LL EE +L GV+K ++ + ELES + L +
Sbjct: 1 AAISNLIPKLGELLTEEFKLHKGVKKNIEDLGKELESXNAAL------IKIGEVPREQLD 54
Query: 64 SV-RTWVKQLRDEAYRIEDFIDEYALMVAKLPHESG---LVGVLHRISRFIKKLRRRRGV 119
S + W ++R+ +Y IED +D++ + V + + G+ R + +KK++ + G+
Sbjct: 55 SQDKLWADEVRELSYVIEDVVDKFLVQVDGIKSDDNNNKFKGLXKRTTELLKKVKHKHGI 114
Query: 120 A 120
A
Sbjct: 115 A 115
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 82/299 (27%), Positives = 125/299 (41%), Gaps = 47/299 (15%)
Query: 536 IANFKLMKVLDLEDSPINYL-PEGVGNLFNLHLLNARNTKLKIIP----KSIGNLLSLEI 590
A+F ++ L+L ++ ++ + P NLFNL L R+ +LK+IP + NL L+I
Sbjct: 52 FASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI 111
Query: 591 LVLARTFVSELPEEIRNLKKLRSLIVFHYKYITGSIIPTEVAAKIHRGFGSLRGL--LVL 648
V L ++L L+SL V + S HR F L L L L
Sbjct: 112 --SENKIVILLDYMFQDLYNLKSLEVGDNDLVYIS----------HRAFSGLNSLEQLTL 159
Query: 649 STIEADSQVLKELMMLRQLRMLSIRPQNGNG-RDLCALIANLENVETLGVLMTSKEEILD 707
S + L L L +L +R N N RD + + + L VL S LD
Sbjct: 160 EKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDY-----SFKRLYRLKVLEISHWPYLD 214
Query: 708 LQSLSSPPQHLRYLSLRG------NMKKLPDWILKLKNLIGLRLILSGLTEDPI-----S 756
+ P L L+L N+ +P L +++L+ LR + L+ +PI S
Sbjct: 215 TMT----PNCLYGLNLTSLSITHCNLTAVP--YLAVRHLVYLRFL--NLSYNPISTIEGS 266
Query: 757 ILQALPNLLELMLHGGYDYELFHFEAGWFPKLRKLVLLNFEAVKLVIIEKGAMPDIREL 815
+L L L E+ L GG +L E F L L +LN +L +E+ + L
Sbjct: 267 MLHELLRLQEIQLVGG---QLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNL 322
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 38.5 bits (88), Expect = 0.016, Method: Composition-based stats.
Identities = 41/121 (33%), Positives = 58/121 (47%), Gaps = 10/121 (8%)
Query: 698 LMTSKEEILDLQSLSSPPQHLRYLSLRGNMKKLPDWILKLKNLIGLR-LILSG--LTEDP 754
++ + +I +Q + P ++RYL+L GN KL D I LK L L LIL+G L P
Sbjct: 46 IIANNSDIKSVQGIQYLP-NVRYLALGGN--KLHD-ISALKELTNLTYLILTGNQLQSLP 101
Query: 755 ISILQALPNLLELMLHGGYDYELFHFEAGWFPKLRKLVLLNFEAVKLVIIEKGAMPDIRE 814
+ L NL EL+L + +L G F KL L LN +L + KG +
Sbjct: 102 NGVFDKLTNLKELVL---VENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTN 158
Query: 815 L 815
L
Sbjct: 159 L 159
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 34.7 bits (78), Expect = 0.21, Method: Composition-based stats.
Identities = 40/121 (33%), Positives = 57/121 (47%), Gaps = 10/121 (8%)
Query: 698 LMTSKEEILDLQSLSSPPQHLRYLSLRGNMKKLPDWILKLKNLIGLR-LILSG--LTEDP 754
++ + +I +Q + P ++RYL+L GN KL D I LK L L LIL+G L P
Sbjct: 46 IIANNSDIKSVQGIQYLP-NVRYLALGGN--KLHD-ISALKELTNLTYLILTGNQLQSLP 101
Query: 755 ISILQALPNLLELMLHGGYDYELFHFEAGWFPKLRKLVLLNFEAVKLVIIEKGAMPDIRE 814
+ L NL EL+L + +L G F KL L L +L + KG +
Sbjct: 102 NGVFDKLTNLKELVL---VENQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTN 158
Query: 815 L 815
L
Sbjct: 159 L 159
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 61/154 (39%), Gaps = 25/154 (16%)
Query: 544 VLDLEDSPINYLPEGVGNLFNLHLLNARNTKLKIIPKSIGNLLSLEILVLARTFVSELPE 603
L+L P+ P+ L +L L +P + LE L LAR + LP
Sbjct: 85 ALELRSVPLPQFPDQAFRLSHLQHXTIDAAGLXELPDTXQQFAGLETLTLARNPLRALPA 144
Query: 604 EIRNLKKLRSLIVFHYKYITGSIIPTEVAAKIHRGFGSLRGLLVLSTIEADSQVLKELMM 663
I +L +LR L + +T +P +A+ G + Q L L
Sbjct: 145 SIASLNRLRELSIRACPELTE--LPEPLASTDASG---------------EHQGLVNLQS 187
Query: 664 LRQLRMLSIRPQNGNGRDLCALIANLENVETLGV 697
LR L I R L A IANL+N+++L +
Sbjct: 188 LR-LEWTGI-------RSLPASIANLQNLKSLKI 213
Score = 29.6 bits (65), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 532 MKSCIANFKLMKVLDLEDSPINYLPEGVGNLFNLHLLNARN-TKLKIIPKSIGNLLSLEI 590
+ + IAN + +K L + +SP++ L + +L L L+ R T L+ P G L+
Sbjct: 198 LPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKR 257
Query: 591 LVLAR-TFVSELPEEIRNLKKLRSL 614
L+L + + LP +I L +L L
Sbjct: 258 LILKDCSNLLTLPLDIHRLTQLEKL 282
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 32.7 bits (73), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Query: 544 VLDLEDSPINYLPEGVGNLFNLHLLNARNTKLKI-IPKSIGNLLSLEILVLA-RTFVSEL 601
+LD D +P G+ N NL+ ++ N +L IPK IG L +L IL L+ +F +
Sbjct: 469 ILDFNDL-TGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNI 527
Query: 602 PEEIRNLKKL 611
P E+ + + L
Sbjct: 528 PAELGDCRSL 537
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Query: 544 VLDLEDSPINYLPEGVGNLFNLHLLNARNTKLKI-IPKSIGNLLSLEILVLA-RTFVSEL 601
+LD D +P G+ N NL+ ++ N +L IPK IG L +L IL L+ +F +
Sbjct: 472 ILDFNDL-TGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNI 530
Query: 602 PEEIRNLKKL 611
P E+ + + L
Sbjct: 531 PAELGDCRSL 540
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 32.3 bits (72), Expect = 1.1, Method: Composition-based stats.
Identities = 42/121 (34%), Positives = 52/121 (42%), Gaps = 14/121 (11%)
Query: 706 LDLQS--LSSPPQH-------LRYLSLRGN-MKKLPDWILK-LKNLIGLRLILSGLTEDP 754
LDLQS LSS P LR L L N ++ LP I K LKNL L + + L P
Sbjct: 42 LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALP 101
Query: 755 ISILQALPNLLELMLHGGYDYELFHFEAGWFPKLRKLVLLNFEAVKLVIIEKGAMPDIRE 814
I + L NL EL L +L F L KL L+ +L + KG +
Sbjct: 102 IGVFDQLVNLAELRLDRN---QLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTS 158
Query: 815 L 815
L
Sbjct: 159 L 159
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 28/56 (50%)
Query: 536 IANFKLMKVLDLEDSPINYLPEGVGNLFNLHLLNARNTKLKIIPKSIGNLLSLEIL 591
I N ++VLDL + + LP +G+ F L + + +P GNL +L+ L
Sbjct: 266 IKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFL 321
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 6/82 (7%)
Query: 752 EDPISILQALPN----LLELMLHGGYDYELFHFEAGWFPKLRKLVLLNFEAVKLVIIEKG 807
ED +++A+ N L++ +L GG + E GW P L V ++ E + +++ G
Sbjct: 24 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTP-LHNAVQMSREDIVELLLRHG 82
Query: 808 AMPDIRELWSGPCPLLMEIPIG 829
A P +R+ +G P ++ G
Sbjct: 83 ADPVLRK-KNGATPFILAAIAG 103
>pdb|3N91|A Chain A, Crystal Structure Of A Structural Genomics, Unknown
Function (Bacova_03430) From Bacteroides Ovatus At 2.40
A Resolution
Length = 323
Score = 29.6 bits (65), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 8/64 (12%)
Query: 140 YRFRSIDEPSRSGT-RNVIPHDSPVRSFFVEDDEVVGI--ESIKDKLIDLMVNGRSKSSV 196
Y R ID + +GT +++I H+ FVE+DEVV I +S KD L+ L S +
Sbjct: 182 YLRRGIDHATVAGTSKDIIRHEQ-----FVENDEVVNISTKSXKDNLLTLKTKDESGKDI 236
Query: 197 VAVV 200
V
Sbjct: 237 SYTV 240
>pdb|3CVR|A Chain A, Crystal Structure Of The Full Length Ipah3
Length = 571
Score = 29.6 bits (65), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Query: 542 MKVLDLEDSPINYLPEGVGNLFNLHLLNARNTKLKIIPKSIGNLLSLEILVLARTFVSEL 601
+K LD++++ + LPE L +NA N +L +P+ +L L + TF+ EL
Sbjct: 122 LKHLDVDNNQLTXLPELPALL---EYINADNNQLTXLPELPTSLEVLSVRNNQLTFLPEL 178
Query: 602 PEEIRNL 608
PE + L
Sbjct: 179 PESLEAL 185
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 29.6 bits (65), Expect = 8.4, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 47/92 (51%), Gaps = 8/92 (8%)
Query: 752 EDPISILQALPN----LLELMLHGGYDYELFHFEAGWFPKLRKLVLLNFEAVKLVIIEKG 807
ED +++A+ N L++ +L GG + E GW P L V ++ E + +++ G
Sbjct: 4 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTP-LHNAVQMSREDIVELLLRHG 62
Query: 808 AMPDIRELWSGPCPLLMEIPIGIEHLRNLELF 839
A P +R+ +G P L+ G ++ L+LF
Sbjct: 63 ADPVLRKK-NGATPFLLAAIAG--SVKLLKLF 91
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.139 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,163,262
Number of Sequences: 62578
Number of extensions: 1020308
Number of successful extensions: 2164
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 2147
Number of HSP's gapped (non-prelim): 43
length of query: 895
length of database: 14,973,337
effective HSP length: 108
effective length of query: 787
effective length of database: 8,214,913
effective search space: 6465136531
effective search space used: 6465136531
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)