Query 002663
Match_columns 895
No_of_seqs 460 out of 4778
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 04:35:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002663.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002663hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 1.5E-78 3.3E-83 702.8 39.5 790 3-844 2-856 (889)
2 PLN03210 Resistant to P. syrin 100.0 1.9E-56 4.2E-61 550.2 40.9 627 168-845 181-904 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 1.4E-32 3.1E-37 290.8 10.8 246 176-424 1-285 (287)
4 PLN00113 leucine-rich repeat r 99.9 1.3E-25 2.8E-30 278.5 16.4 363 493-877 119-512 (968)
5 PLN00113 leucine-rich repeat r 99.9 2E-25 4.4E-30 276.7 16.7 353 512-877 91-465 (968)
6 KOG0444 Cytoskeletal regulator 99.9 6.8E-25 1.5E-29 229.4 -5.8 315 492-824 55-376 (1255)
7 KOG0444 Cytoskeletal regulator 99.9 7.3E-25 1.6E-29 229.2 -5.5 337 493-849 33-377 (1255)
8 KOG4194 Membrane glycoprotein 99.9 5.4E-23 1.2E-27 214.2 1.1 345 513-880 77-456 (873)
9 PLN03210 Resistant to P. syrin 99.8 4.6E-20 9.9E-25 228.5 19.9 264 539-825 610-908 (1153)
10 KOG4194 Membrane glycoprotein 99.8 2.8E-21 6.1E-26 201.5 2.6 289 541-844 79-375 (873)
11 KOG0472 Leucine-rich repeat pr 99.8 1.8E-21 3.9E-26 194.3 -9.0 171 538-726 135-307 (565)
12 KOG0618 Serine/threonine phosp 99.7 2.8E-20 6.1E-25 204.9 -8.4 344 515-875 46-487 (1081)
13 KOG0472 Leucine-rich repeat pr 99.7 2.3E-20 4.9E-25 186.5 -11.9 260 542-845 47-308 (565)
14 KOG0618 Serine/threonine phosp 99.6 1.3E-17 2.8E-22 184.1 -6.0 323 512-845 66-487 (1081)
15 PRK15387 E3 ubiquitin-protein 99.6 1.8E-15 3.8E-20 173.5 10.7 254 541-845 202-456 (788)
16 PRK15370 E3 ubiquitin-protein 99.5 1.9E-14 4.1E-19 166.3 8.0 242 542-845 180-426 (754)
17 PRK15387 E3 ubiquitin-protein 99.5 2.6E-14 5.7E-19 163.9 8.4 242 541-830 223-465 (788)
18 PRK15370 E3 ubiquitin-protein 99.4 2.7E-13 5.9E-18 156.9 5.9 72 541-618 200-271 (754)
19 KOG0617 Ras suppressor protein 99.4 1.2E-14 2.5E-19 128.9 -5.1 132 536-678 52-186 (264)
20 KOG4658 Apoptotic ATPase [Sign 99.3 1E-12 2.2E-17 154.5 7.1 312 509-873 518-855 (889)
21 KOG0617 Ras suppressor protein 99.3 2.8E-14 6.1E-19 126.5 -4.9 154 537-701 30-184 (264)
22 KOG4237 Extracellular matrix p 99.3 8.4E-14 1.8E-18 139.9 -2.7 269 542-845 69-357 (498)
23 cd00116 LRR_RI Leucine-rich re 99.3 1.6E-13 3.5E-18 148.0 -1.2 110 736-845 191-318 (319)
24 cd00116 LRR_RI Leucine-rich re 99.3 9E-13 2E-17 142.2 1.6 261 533-821 16-318 (319)
25 KOG4237 Extracellular matrix p 99.2 9.5E-13 2.1E-17 132.5 -5.3 122 517-651 70-196 (498)
26 KOG4341 F-box protein containi 99.0 5.8E-12 1.2E-16 128.1 -7.8 151 716-870 294-458 (483)
27 KOG3207 Beta-tubulin folding c 98.9 7.9E-10 1.7E-14 113.5 2.1 182 560-774 118-313 (505)
28 KOG2120 SCF ubiquitin ligase, 98.8 2.3E-10 4.9E-15 111.2 -3.3 139 658-796 227-373 (419)
29 KOG3207 Beta-tubulin folding c 98.8 1.4E-09 3E-14 111.7 -0.1 204 639-845 117-337 (505)
30 KOG1909 Ran GTPase-activating 98.7 1.7E-09 3.7E-14 108.1 -1.9 250 534-822 24-310 (382)
31 PF14580 LRR_9: Leucine-rich r 98.7 1.9E-08 4.1E-13 94.8 5.1 82 537-620 16-99 (175)
32 KOG2120 SCF ubiquitin ligase, 98.7 7.5E-10 1.6E-14 107.7 -4.4 164 659-823 204-376 (419)
33 COG4886 Leucine-rich repeat (L 98.7 1.1E-08 2.3E-13 113.6 3.9 85 536-620 112-197 (394)
34 KOG1909 Ran GTPase-activating 98.7 1.4E-09 3.1E-14 108.6 -3.3 188 658-845 85-309 (382)
35 KOG1259 Nischarin, modulator o 98.6 3.7E-09 7.9E-14 102.9 -1.1 41 578-618 206-246 (490)
36 KOG0532 Leucine-rich repeat (L 98.6 1.9E-09 4.2E-14 114.1 -4.0 79 539-618 97-175 (722)
37 KOG1259 Nischarin, modulator o 98.6 9.2E-09 2E-13 100.2 0.8 131 537-702 281-411 (490)
38 KOG0532 Leucine-rich repeat (L 98.5 3.8E-09 8.3E-14 111.9 -5.0 151 513-679 97-248 (722)
39 KOG4341 F-box protein containi 98.5 3.1E-09 6.7E-14 108.6 -5.9 270 564-869 139-431 (483)
40 PRK00411 cdc6 cell division co 98.4 1.6E-05 3.6E-10 88.1 21.1 287 169-463 28-374 (394)
41 COG4886 Leucine-rich repeat (L 98.4 1.7E-07 3.7E-12 104.1 4.8 198 543-780 96-295 (394)
42 PF14580 LRR_9: Leucine-rich r 98.3 1.7E-07 3.7E-12 88.3 1.7 133 551-697 8-147 (175)
43 PRK04841 transcriptional regul 98.3 4.8E-05 1.1E-09 94.6 23.9 268 171-475 14-333 (903)
44 PF13855 LRR_8: Leucine rich r 98.3 6.1E-07 1.3E-11 69.1 4.0 56 541-596 2-59 (61)
45 PF05729 NACHT: NACHT domain 98.3 1.2E-06 2.6E-11 84.0 7.0 132 195-326 1-162 (166)
46 KOG2982 Uncharacterized conser 98.3 1.8E-07 3.8E-12 91.5 0.3 87 534-620 65-157 (418)
47 PRK00080 ruvB Holliday junctio 98.3 1E-05 2.2E-10 86.8 13.3 254 170-449 24-310 (328)
48 TIGR00635 ruvB Holliday juncti 98.2 2.9E-05 6.3E-10 82.7 15.8 257 171-449 4-289 (305)
49 PTZ00202 tuzin; Provisional 98.2 5.9E-05 1.3E-09 79.5 17.1 76 168-251 259-335 (550)
50 PF13855 LRR_8: Leucine rich r 98.2 1.6E-06 3.6E-11 66.7 3.9 58 563-620 1-60 (61)
51 PLN03150 hypothetical protein; 98.1 4.5E-06 9.8E-11 97.1 7.3 80 541-620 419-501 (623)
52 KOG0531 Protein phosphatase 1, 98.1 6.8E-07 1.5E-11 99.3 -0.5 194 536-772 91-287 (414)
53 PRK06893 DNA replication initi 98.1 1.8E-05 4E-10 79.7 9.8 127 194-331 39-178 (229)
54 PF12799 LRR_4: Leucine Rich r 98.0 5.2E-06 1.1E-10 58.3 3.8 39 564-602 2-40 (44)
55 COG2256 MGS1 ATPase related to 98.0 1.3E-05 2.7E-10 82.9 8.1 144 171-326 24-175 (436)
56 PF13173 AAA_14: AAA domain 98.0 1.2E-05 2.5E-10 73.0 7.1 123 194-319 2-127 (128)
57 PLN03150 hypothetical protein; 98.0 5E-06 1.1E-10 96.7 4.8 111 717-827 419-532 (623)
58 PF12799 LRR_4: Leucine Rich r 97.9 8.4E-06 1.8E-10 57.2 3.3 41 540-580 1-41 (44)
59 COG2909 MalT ATP-dependent tra 97.9 0.00087 1.9E-08 76.2 20.4 272 171-476 19-340 (894)
60 KOG0531 Protein phosphatase 1, 97.9 1.3E-06 2.7E-11 97.1 -2.0 105 511-620 92-197 (414)
61 KOG3665 ZYG-1-like serine/thre 97.9 4.6E-06 9.9E-11 96.5 1.9 139 533-698 141-283 (699)
62 KOG2982 Uncharacterized conser 97.9 1.2E-05 2.7E-10 78.9 4.3 178 662-842 68-287 (418)
63 KOG2028 ATPase related to the 97.8 7.8E-05 1.7E-09 75.5 9.4 149 171-326 138-293 (554)
64 PRK09376 rho transcription ter 97.8 1.8E-05 4E-10 83.0 4.5 52 194-246 169-222 (416)
65 cd01128 rho_factor Transcripti 97.8 4.2E-05 9.2E-10 77.1 6.3 52 194-246 16-69 (249)
66 TIGR02928 orc1/cdc6 family rep 97.8 5.2E-05 1.1E-09 83.2 7.7 82 169-250 13-100 (365)
67 PRK15386 type III secretion pr 97.8 9.7E-05 2.1E-09 78.6 9.0 71 536-617 48-120 (426)
68 PF13191 AAA_16: AAA ATPase do 97.7 2.8E-05 6E-10 76.1 3.9 50 172-221 1-51 (185)
69 PRK12402 replication factor C 97.7 0.0005 1.1E-08 74.6 13.7 153 171-329 15-199 (337)
70 KOG1859 Leucine-rich repeat pr 97.7 2.2E-06 4.9E-11 93.8 -4.9 76 542-619 166-242 (1096)
71 PRK07003 DNA polymerase III su 97.7 0.00052 1.1E-08 78.2 13.3 154 170-329 15-193 (830)
72 PRK13342 recombination factor 97.6 0.00017 3.7E-09 79.8 9.4 143 171-327 12-164 (413)
73 PRK14960 DNA polymerase III su 97.6 0.00068 1.5E-08 76.3 13.7 154 170-329 14-192 (702)
74 COG5238 RNA1 Ran GTPase-activa 97.6 1.3E-05 2.9E-10 77.7 0.2 249 537-823 27-316 (388)
75 PLN03025 replication factor C 97.6 0.00079 1.7E-08 71.9 13.3 154 170-329 12-173 (319)
76 KOG1859 Leucine-rich repeat pr 97.6 9.9E-07 2.1E-11 96.5 -8.7 85 533-619 180-264 (1096)
77 PRK14961 DNA polymerase III su 97.5 0.0012 2.7E-08 71.6 14.0 154 170-329 15-193 (363)
78 PRK08727 hypothetical protein; 97.5 0.00075 1.6E-08 68.2 11.3 143 173-330 22-178 (233)
79 PRK00440 rfc replication facto 97.5 0.0016 3.5E-08 70.0 14.5 154 170-330 16-177 (319)
80 PRK14949 DNA polymerase III su 97.4 0.0018 3.9E-08 75.5 14.0 153 170-328 15-192 (944)
81 PRK08084 DNA replication initi 97.4 0.0011 2.4E-08 67.0 11.2 145 170-329 22-182 (235)
82 PRK08691 DNA polymerase III su 97.4 0.0039 8.3E-08 71.2 16.3 156 170-329 15-193 (709)
83 TIGR01242 26Sp45 26S proteasom 97.4 0.00094 2E-08 72.8 11.3 162 168-331 119-310 (364)
84 PRK05564 DNA polymerase III su 97.4 0.0017 3.6E-08 69.3 12.7 150 171-326 4-164 (313)
85 PRK06645 DNA polymerase III su 97.4 0.0024 5.2E-08 71.4 14.2 155 170-330 20-203 (507)
86 PRK04195 replication factor C 97.4 0.01 2.2E-07 67.3 19.5 150 170-329 13-175 (482)
87 TIGR03420 DnaA_homol_Hda DnaA 97.4 0.00038 8.3E-09 70.5 7.3 137 176-327 22-172 (226)
88 PRK14957 DNA polymerase III su 97.4 0.0022 4.8E-08 72.2 13.8 152 170-327 15-191 (546)
89 KOG3665 ZYG-1-like serine/thre 97.4 0.00011 2.3E-09 85.4 3.5 109 510-620 144-261 (699)
90 COG1222 RPT1 ATP-dependent 26S 97.4 0.006 1.3E-07 62.6 15.3 155 169-331 149-339 (406)
91 PRK12323 DNA polymerase III su 97.3 0.0021 4.6E-08 72.3 12.9 153 170-328 15-197 (700)
92 PRK14963 DNA polymerase III su 97.3 0.0027 5.9E-08 71.3 13.9 155 170-330 13-191 (504)
93 PRK14964 DNA polymerase III su 97.3 0.0023 5E-08 70.9 12.9 155 170-330 12-191 (491)
94 TIGR02903 spore_lon_C ATP-depe 97.3 0.0017 3.7E-08 75.2 12.5 46 171-218 154-199 (615)
95 PRK08118 topology modulation p 97.3 0.0001 2.2E-09 70.1 1.9 36 195-230 2-38 (167)
96 KOG4579 Leucine-rich repeat (L 97.3 1.3E-05 2.9E-10 69.5 -3.7 77 540-616 53-130 (177)
97 PRK13341 recombination factor 97.3 0.00086 1.9E-08 78.3 9.7 51 170-224 27-80 (725)
98 KOG2004 Mitochondrial ATP-depe 97.3 0.0028 6.1E-08 70.5 12.9 55 168-224 408-466 (906)
99 PRK11331 5-methylcytosine-spec 97.3 0.00044 9.4E-09 74.6 6.6 69 171-243 175-243 (459)
100 PRK15386 type III secretion pr 97.3 0.0011 2.3E-08 70.9 9.4 11 787-797 157-167 (426)
101 PRK14962 DNA polymerase III su 97.3 0.0049 1.1E-07 68.7 14.9 154 170-329 13-191 (472)
102 COG5238 RNA1 Ran GTPase-activa 97.3 0.00017 3.8E-09 70.1 3.0 235 513-797 29-314 (388)
103 KOG4579 Leucine-rich repeat (L 97.3 3.9E-05 8.5E-10 66.6 -1.2 78 542-619 29-110 (177)
104 KOG1947 Leucine rich repeat pr 97.3 3.3E-05 7.1E-10 88.7 -2.4 235 562-845 187-438 (482)
105 PF01637 Arch_ATPase: Archaeal 97.3 0.00018 3.9E-09 73.4 3.3 43 173-217 1-43 (234)
106 PRK09087 hypothetical protein; 97.2 0.0038 8.3E-08 62.5 12.3 116 194-329 44-168 (226)
107 PRK14958 DNA polymerase III su 97.2 0.0042 9.2E-08 70.0 13.9 152 170-327 15-191 (509)
108 PRK05896 DNA polymerase III su 97.2 0.0033 7.1E-08 70.9 12.8 153 170-328 15-192 (605)
109 PRK14956 DNA polymerase III su 97.2 0.0037 7.9E-08 68.5 12.7 153 170-328 17-194 (484)
110 PRK14951 DNA polymerase III su 97.2 0.004 8.6E-08 71.2 13.6 154 170-329 15-198 (618)
111 cd00009 AAA The AAA+ (ATPases 97.2 0.0007 1.5E-08 63.2 6.4 60 174-237 1-60 (151)
112 PRK03992 proteasome-activating 97.2 0.0064 1.4E-07 66.6 14.6 159 168-331 128-319 (389)
113 PF05496 RuvB_N: Holliday junc 97.2 0.00047 1E-08 66.7 4.7 53 170-224 23-78 (233)
114 TIGR03015 pepcterm_ATPase puta 97.2 0.0041 8.8E-08 64.9 12.3 56 194-252 43-98 (269)
115 TIGR00767 rho transcription te 97.2 0.00067 1.5E-08 71.9 6.1 54 194-248 168-223 (415)
116 PRK05642 DNA replication initi 97.0 0.0034 7.5E-08 63.4 10.0 127 194-330 45-182 (234)
117 PRK14969 DNA polymerase III su 97.0 0.0081 1.8E-07 68.2 13.9 152 170-327 15-191 (527)
118 PRK14955 DNA polymerase III su 97.0 0.0043 9.4E-08 68.2 11.5 153 170-327 15-199 (397)
119 TIGR02397 dnaX_nterm DNA polym 97.0 0.01 2.2E-07 64.8 14.3 153 170-329 13-191 (355)
120 PRK14952 DNA polymerase III su 97.0 0.01 2.2E-07 67.7 14.3 153 170-328 12-191 (584)
121 PRK06620 hypothetical protein; 97.0 0.021 4.6E-07 56.6 15.0 133 169-328 15-161 (214)
122 PRK07940 DNA polymerase III su 97.0 0.0094 2E-07 64.8 13.2 151 171-326 5-188 (394)
123 KOG1644 U2-associated snRNP A' 97.0 0.00083 1.8E-08 62.9 4.4 12 832-843 138-149 (233)
124 PRK07994 DNA polymerase III su 96.9 0.0091 2E-07 68.5 13.2 152 170-327 15-191 (647)
125 PTZ00361 26 proteosome regulat 96.9 0.016 3.6E-07 63.5 14.6 155 171-330 183-370 (438)
126 PHA02544 44 clamp loader, smal 96.9 0.0043 9.3E-08 66.5 10.1 146 169-325 19-171 (316)
127 PRK09111 DNA polymerase III su 96.9 0.011 2.3E-07 67.9 13.5 155 169-329 22-206 (598)
128 TIGR03689 pup_AAA proteasome A 96.9 0.011 2.3E-07 66.0 12.8 158 169-328 180-379 (512)
129 TIGR02881 spore_V_K stage V sp 96.9 0.0061 1.3E-07 63.0 10.2 47 171-217 6-65 (261)
130 PRK14970 DNA polymerase III su 96.9 0.016 3.4E-07 63.5 14.0 155 170-330 16-183 (367)
131 PRK07764 DNA polymerase III su 96.9 0.012 2.6E-07 69.9 13.7 152 170-327 14-192 (824)
132 PRK14954 DNA polymerase III su 96.8 0.017 3.7E-07 66.3 14.5 152 170-328 15-200 (620)
133 smart00763 AAA_PrkA PrkA AAA d 96.8 0.00096 2.1E-08 70.0 3.7 47 171-217 51-101 (361)
134 PRK14959 DNA polymerase III su 96.8 0.021 4.5E-07 65.0 14.1 154 170-329 15-193 (624)
135 PTZ00112 origin recognition co 96.7 0.0057 1.2E-07 70.5 9.3 81 170-250 754-842 (1164)
136 CHL00181 cbbX CbbX; Provisiona 96.7 0.019 4E-07 59.9 12.5 47 171-217 23-82 (287)
137 PF00308 Bac_DnaA: Bacterial d 96.7 0.027 5.8E-07 56.3 13.1 153 170-331 8-183 (219)
138 PF05659 RPW8: Arabidopsis bro 96.7 0.035 7.5E-07 50.8 12.5 108 2-134 7-114 (147)
139 PRK08451 DNA polymerase III su 96.7 0.028 6.1E-07 63.1 14.4 153 170-328 13-190 (535)
140 COG1474 CDC6 Cdc6-related prot 96.7 0.0046 1E-07 66.4 8.0 79 170-250 16-98 (366)
141 TIGR03345 VI_ClpV1 type VI sec 96.7 0.013 2.9E-07 70.4 12.7 46 170-217 186-231 (852)
142 TIGR02880 cbbX_cfxQ probable R 96.7 0.0086 1.9E-07 62.4 9.7 159 171-329 22-210 (284)
143 PRK06305 DNA polymerase III su 96.7 0.026 5.6E-07 62.9 14.0 152 170-328 16-194 (451)
144 PF13207 AAA_17: AAA domain; P 96.7 0.0011 2.5E-08 59.4 2.8 22 196-217 1-22 (121)
145 PF13401 AAA_22: AAA domain; P 96.7 0.00085 1.9E-08 61.2 2.0 58 194-253 4-66 (131)
146 PRK14971 DNA polymerase III su 96.7 0.022 4.8E-07 65.9 13.7 153 170-329 16-195 (614)
147 PRK07133 DNA polymerase III su 96.6 0.027 5.7E-07 65.2 13.6 152 170-327 17-190 (725)
148 KOG1644 U2-associated snRNP A' 96.6 0.0018 4E-08 60.7 3.4 105 717-821 43-151 (233)
149 PTZ00454 26S protease regulato 96.6 0.029 6.4E-07 61.1 13.2 50 168-217 142-202 (398)
150 PRK07261 topology modulation p 96.5 0.004 8.7E-08 59.5 5.7 50 196-245 2-52 (171)
151 PRK06696 uridine kinase; Valid 96.5 0.0028 6.1E-08 63.7 4.8 42 176-217 3-45 (223)
152 TIGR02639 ClpA ATP-dependent C 96.5 0.01 2.3E-07 70.8 10.2 45 171-217 182-226 (731)
153 TIGR00678 holB DNA polymerase 96.5 0.041 8.8E-07 53.7 12.3 139 182-326 3-167 (188)
154 KOG1947 Leucine rich repeat pr 96.4 0.00019 4.1E-09 82.4 -5.1 213 585-845 187-412 (482)
155 COG0466 Lon ATP-dependent Lon 96.4 0.013 2.9E-07 65.7 9.2 54 169-224 321-378 (782)
156 PRK07667 uridine kinase; Provi 96.4 0.0044 9.5E-08 60.7 4.9 38 180-217 3-40 (193)
157 PRK14950 DNA polymerase III su 96.4 0.046 1E-06 63.3 13.9 154 170-329 15-194 (585)
158 COG3903 Predicted ATPase [Gene 96.3 0.003 6.5E-08 66.3 3.6 263 193-475 13-315 (414)
159 PRK14953 DNA polymerase III su 96.3 0.07 1.5E-06 59.9 14.6 153 170-328 15-192 (486)
160 PRK14965 DNA polymerase III su 96.3 0.046 1E-06 63.0 13.5 152 170-327 15-191 (576)
161 PRK14948 DNA polymerase III su 96.3 0.065 1.4E-06 62.0 14.3 154 170-329 15-195 (620)
162 KOG0726 26S proteasome regulat 96.3 0.052 1.1E-06 53.9 11.3 53 170-224 184-247 (440)
163 PRK06647 DNA polymerase III su 96.2 0.081 1.8E-06 60.5 14.8 153 170-329 15-193 (563)
164 PRK15455 PrkA family serine pr 96.2 0.0046 9.9E-08 68.4 4.5 45 172-216 77-125 (644)
165 PF12061 DUF3542: Protein of u 96.2 0.018 3.9E-07 57.5 7.8 76 5-87 297-373 (402)
166 PRK11034 clpA ATP-dependent Cl 96.2 0.033 7.2E-07 65.7 11.5 45 171-217 186-230 (758)
167 PRK07471 DNA polymerase III su 96.1 0.091 2E-06 56.7 13.8 153 169-327 17-213 (365)
168 COG2255 RuvB Holliday junction 96.1 0.0051 1.1E-07 61.0 3.5 48 170-217 25-75 (332)
169 TIGR00763 lon ATP-dependent pr 96.1 0.076 1.6E-06 63.9 14.1 48 170-217 319-370 (775)
170 PRK12422 chromosomal replicati 96.0 0.033 7.2E-07 61.8 10.1 150 170-330 111-287 (445)
171 PRK05563 DNA polymerase III su 96.0 0.098 2.1E-06 60.1 14.0 152 170-328 15-192 (559)
172 PRK14087 dnaA chromosomal repl 96.0 0.024 5.1E-07 63.2 8.8 151 170-329 115-290 (450)
173 KOG2739 Leucine-rich acidic nu 95.9 0.0037 8E-08 61.4 1.9 81 536-617 61-151 (260)
174 COG1618 Predicted nucleotide k 95.9 0.0056 1.2E-07 55.3 2.7 23 195-217 6-28 (179)
175 COG3899 Predicted ATPase [Gene 95.9 0.11 2.5E-06 62.6 14.5 46 172-217 1-47 (849)
176 KOG2123 Uncharacterized conser 95.9 0.00055 1.2E-08 67.0 -4.0 78 541-620 20-99 (388)
177 PRK09112 DNA polymerase III su 95.9 0.16 3.4E-06 54.6 14.1 48 169-217 21-68 (351)
178 PRK08903 DnaA regulatory inact 95.9 0.013 2.8E-07 59.3 5.6 44 173-217 21-65 (227)
179 COG0593 DnaA ATPase involved i 95.8 0.081 1.8E-06 56.9 11.5 152 170-331 87-261 (408)
180 PF00560 LRR_1: Leucine Rich R 95.8 0.0048 1E-07 35.8 1.4 19 565-583 2-20 (22)
181 TIGR00362 DnaA chromosomal rep 95.8 0.044 9.5E-07 60.8 10.1 60 170-231 110-173 (405)
182 CHL00095 clpC Clp protease ATP 95.8 0.0071 1.5E-07 73.1 4.0 45 171-217 179-223 (821)
183 KOG2543 Origin recognition com 95.7 0.025 5.4E-07 58.6 6.8 76 170-250 5-81 (438)
184 PF13238 AAA_18: AAA domain; P 95.7 0.0066 1.4E-07 55.0 2.5 21 197-217 1-21 (129)
185 PF00485 PRK: Phosphoribulokin 95.7 0.0068 1.5E-07 59.5 2.8 22 196-217 1-22 (194)
186 PRK14088 dnaA chromosomal repl 95.6 0.063 1.4E-06 59.8 10.3 148 170-329 105-278 (440)
187 PRK00149 dnaA chromosomal repl 95.6 0.05 1.1E-06 61.2 9.5 60 171-232 123-186 (450)
188 PRK13531 regulatory ATPase Rav 95.5 0.013 2.9E-07 64.0 4.5 43 171-217 20-62 (498)
189 COG1373 Predicted ATPase (AAA+ 95.5 0.11 2.5E-06 56.8 11.6 135 178-322 24-162 (398)
190 TIGR02237 recomb_radB DNA repa 95.5 0.02 4.4E-07 57.0 5.4 49 192-243 10-58 (209)
191 PRK08058 DNA polymerase III su 95.5 0.13 2.7E-06 55.1 11.6 149 172-326 6-181 (329)
192 PF05621 TniB: Bacterial TniB 95.5 0.054 1.2E-06 55.4 8.2 75 178-254 44-125 (302)
193 PRK10865 protein disaggregatio 95.4 0.013 2.7E-07 70.9 4.3 45 171-217 178-222 (857)
194 KOG2123 Uncharacterized conser 95.4 0.001 2.2E-08 65.2 -4.0 98 513-615 18-123 (388)
195 PRK09270 nucleoside triphospha 95.4 0.019 4.2E-07 58.0 4.9 27 191-217 30-56 (229)
196 cd02019 NK Nucleoside/nucleoti 95.4 0.01 2.2E-07 46.7 2.2 22 196-217 1-22 (69)
197 KOG2739 Leucine-rich acidic nu 95.4 0.0079 1.7E-07 59.1 1.9 86 534-620 37-127 (260)
198 PRK06547 hypothetical protein; 95.4 0.02 4.4E-07 54.4 4.6 26 192-217 13-38 (172)
199 TIGR00235 udk uridine kinase. 95.4 0.012 2.6E-07 58.4 3.2 26 192-217 4-29 (207)
200 PRK05541 adenylylsulfate kinas 95.3 0.015 3.2E-07 56.1 3.6 36 194-231 7-42 (176)
201 PRK05480 uridine/cytidine kina 95.3 0.014 3E-07 58.2 3.3 25 193-217 5-29 (209)
202 PRK08233 hypothetical protein; 95.3 0.014 3E-07 56.8 3.2 24 194-217 3-26 (182)
203 PRK10787 DNA-binding ATP-depen 95.3 0.058 1.2E-06 64.3 8.9 48 169-216 320-371 (784)
204 TIGR00150 HI0065_YjeE ATPase, 95.2 0.025 5.5E-07 50.7 4.4 40 178-217 6-45 (133)
205 PRK09361 radB DNA repair and r 95.2 0.037 7.9E-07 55.9 6.2 58 181-241 10-67 (225)
206 PF07726 AAA_3: ATPase family 95.2 0.0097 2.1E-07 52.2 1.7 27 197-225 2-28 (131)
207 PHA00729 NTP-binding motif con 95.2 0.023 5E-07 55.9 4.5 25 193-217 16-40 (226)
208 COG0572 Udk Uridine kinase [Nu 95.2 0.016 3.4E-07 56.3 3.0 26 192-217 6-31 (218)
209 KOG0730 AAA+-type ATPase [Post 95.1 0.23 5.1E-06 55.5 12.3 160 165-331 428-619 (693)
210 PTZ00301 uridine kinase; Provi 95.1 0.016 3.5E-07 57.1 3.1 23 194-216 3-25 (210)
211 PRK14086 dnaA chromosomal repl 95.1 0.1 2.3E-06 59.2 9.7 126 194-330 314-462 (617)
212 cd01123 Rad51_DMC1_radA Rad51_ 95.1 0.055 1.2E-06 55.1 7.1 61 183-243 8-72 (235)
213 PRK06762 hypothetical protein; 95.1 0.016 3.4E-07 55.3 2.9 23 195-217 3-25 (166)
214 smart00382 AAA ATPases associa 95.1 0.021 4.6E-07 52.6 3.8 37 195-233 3-39 (148)
215 cd01394 radB RadB. The archaea 95.1 0.049 1.1E-06 54.7 6.6 56 180-237 5-60 (218)
216 PF13671 AAA_33: AAA domain; P 95.1 0.016 3.5E-07 53.6 2.9 21 196-216 1-21 (143)
217 PF00004 AAA: ATPase family as 95.0 0.016 3.4E-07 52.8 2.6 21 197-217 1-21 (132)
218 TIGR00390 hslU ATP-dependent p 95.0 0.059 1.3E-06 57.8 7.0 78 170-249 11-104 (441)
219 KOG0989 Replication factor C, 94.9 0.27 5.7E-06 49.8 10.9 159 169-331 34-205 (346)
220 COG1428 Deoxynucleoside kinase 94.9 0.017 3.7E-07 55.2 2.6 24 194-217 4-27 (216)
221 PF00560 LRR_1: Leucine Rich R 94.9 0.012 2.7E-07 34.1 1.1 22 587-608 1-22 (22)
222 cd01393 recA_like RecA is a b 94.9 0.065 1.4E-06 54.1 7.1 60 181-242 6-71 (226)
223 TIGR03346 chaperone_ClpB ATP-d 94.9 0.022 4.9E-07 69.1 4.3 45 171-217 173-217 (852)
224 KOG0991 Replication factor C, 94.9 0.028 6.2E-07 53.9 3.9 74 169-245 25-99 (333)
225 PRK04040 adenylate kinase; Pro 94.8 0.02 4.4E-07 55.5 2.9 23 195-217 3-25 (188)
226 PF01583 APS_kinase: Adenylyls 94.8 0.023 5E-07 52.5 3.0 35 195-231 3-37 (156)
227 TIGR01360 aden_kin_iso1 adenyl 94.8 0.022 4.7E-07 55.7 3.1 25 193-217 2-26 (188)
228 PF07728 AAA_5: AAA domain (dy 94.7 0.045 9.7E-07 50.4 4.9 43 197-244 2-44 (139)
229 PF05673 DUF815: Protein of un 94.7 0.072 1.6E-06 52.7 6.4 49 168-217 24-75 (249)
230 PRK03839 putative kinase; Prov 94.7 0.021 4.5E-07 55.3 2.7 22 196-217 2-23 (180)
231 PF00158 Sigma54_activat: Sigm 94.6 0.1 2.2E-06 49.5 7.0 45 173-217 1-45 (168)
232 COG1936 Predicted nucleotide k 94.6 0.024 5.2E-07 52.2 2.6 20 196-215 2-21 (180)
233 PRK05201 hslU ATP-dependent pr 94.6 0.067 1.5E-06 57.5 6.3 48 170-217 14-73 (443)
234 PRK00625 shikimate kinase; Pro 94.6 0.023 4.9E-07 54.2 2.5 22 196-217 2-23 (173)
235 COG1223 Predicted ATPase (AAA+ 94.6 0.043 9.3E-07 53.7 4.3 50 168-217 118-174 (368)
236 PF00910 RNA_helicase: RNA hel 94.6 0.018 4E-07 50.0 1.7 21 197-217 1-21 (107)
237 cd02024 NRK1 Nicotinamide ribo 94.6 0.02 4.4E-07 55.0 2.2 22 196-217 1-22 (187)
238 CHL00195 ycf46 Ycf46; Provisio 94.5 0.24 5.2E-06 55.5 10.8 48 170-217 227-282 (489)
239 cd02023 UMPK Uridine monophosp 94.5 0.021 4.5E-07 56.3 2.2 22 196-217 1-22 (198)
240 cd02025 PanK Pantothenate kina 94.5 0.02 4.3E-07 57.2 2.1 22 196-217 1-22 (220)
241 PF13177 DNA_pol3_delta2: DNA 94.5 0.32 6.9E-06 45.9 10.2 135 175-315 1-162 (162)
242 KOG0727 26S proteasome regulat 94.5 0.072 1.6E-06 51.7 5.6 55 168-224 152-217 (408)
243 PRK07399 DNA polymerase III su 94.4 0.5 1.1E-05 49.9 12.3 152 171-327 4-195 (314)
244 COG2019 AdkA Archaeal adenylat 94.3 0.037 8E-07 50.4 3.1 24 194-217 4-27 (189)
245 PLN02318 phosphoribulokinase/u 94.3 0.048 1E-06 60.9 4.6 35 183-217 54-88 (656)
246 TIGR02322 phosphon_PhnN phosph 94.2 0.032 6.9E-07 54.0 2.8 23 195-217 2-24 (179)
247 COG0470 HolB ATPase involved i 94.2 0.29 6.4E-06 52.5 10.6 142 172-317 2-171 (325)
248 COG0003 ArsA Predicted ATPase 94.2 0.059 1.3E-06 56.5 4.8 49 194-244 2-50 (322)
249 PRK13765 ATP-dependent proteas 94.1 0.07 1.5E-06 61.6 5.7 76 170-251 30-105 (637)
250 PRK00889 adenylylsulfate kinas 94.1 0.04 8.6E-07 53.1 3.3 24 194-217 4-27 (175)
251 PRK05707 DNA polymerase III su 94.1 0.79 1.7E-05 48.8 13.1 129 193-326 21-177 (328)
252 PRK00131 aroK shikimate kinase 94.1 0.036 7.9E-07 53.3 2.9 24 194-217 4-27 (175)
253 PRK12726 flagellar biosynthesi 94.1 0.73 1.6E-05 49.1 12.5 38 194-233 206-243 (407)
254 KOG0731 AAA+-type ATPase conta 94.1 0.33 7.1E-06 56.1 10.7 156 169-331 309-499 (774)
255 TIGR00764 lon_rel lon-related 94.0 0.12 2.5E-06 60.0 7.2 76 170-252 17-93 (608)
256 cd02028 UMPK_like Uridine mono 94.0 0.032 7E-07 53.7 2.3 22 196-217 1-22 (179)
257 PRK10536 hypothetical protein; 94.0 0.092 2E-06 52.6 5.5 52 171-226 55-106 (262)
258 TIGR03263 guanyl_kin guanylate 94.0 0.039 8.4E-07 53.5 2.8 23 195-217 2-24 (180)
259 TIGR01359 UMP_CMP_kin_fam UMP- 94.0 0.032 6.8E-07 54.3 2.2 22 196-217 1-22 (183)
260 cd00227 CPT Chloramphenicol (C 93.9 0.038 8.2E-07 53.2 2.6 23 195-217 3-25 (175)
261 PRK12377 putative replication 93.9 0.054 1.2E-06 54.8 3.8 38 194-233 101-138 (248)
262 COG1102 Cmk Cytidylate kinase 93.9 0.036 7.7E-07 50.3 2.1 43 196-251 2-44 (179)
263 cd02021 GntK Gluconate kinase 93.9 0.035 7.6E-07 51.9 2.3 22 196-217 1-22 (150)
264 PRK05439 pantothenate kinase; 93.8 0.082 1.8E-06 55.1 5.0 25 192-216 84-108 (311)
265 PRK06217 hypothetical protein; 93.8 0.039 8.4E-07 53.5 2.5 22 196-217 3-24 (183)
266 COG1703 ArgK Putative periplas 93.8 0.075 1.6E-06 53.6 4.5 63 181-243 38-100 (323)
267 PRK13947 shikimate kinase; Pro 93.8 0.04 8.6E-07 52.8 2.4 22 196-217 3-24 (171)
268 TIGR03877 thermo_KaiC_1 KaiC d 93.8 0.15 3.3E-06 51.8 6.8 62 180-245 7-68 (237)
269 KOG0744 AAA+-type ATPase [Post 93.8 0.072 1.6E-06 54.0 4.2 39 194-232 177-217 (423)
270 cd02020 CMPK Cytidine monophos 93.7 0.039 8.5E-07 51.3 2.2 22 196-217 1-22 (147)
271 PRK10751 molybdopterin-guanine 93.7 0.058 1.3E-06 50.9 3.3 25 193-217 5-29 (173)
272 PRK14738 gmk guanylate kinase; 93.7 0.054 1.2E-06 53.6 3.3 28 190-217 9-36 (206)
273 TIGR02640 gas_vesic_GvpN gas v 93.7 0.15 3.3E-06 52.6 6.7 56 178-242 9-64 (262)
274 TIGR02236 recomb_radA DNA repa 93.7 0.2 4.3E-06 53.3 7.8 63 182-244 83-149 (310)
275 PRK04301 radA DNA repair and r 93.7 0.17 3.7E-06 53.9 7.2 64 181-244 89-156 (317)
276 PF03205 MobB: Molybdopterin g 93.6 0.052 1.1E-06 49.7 2.8 38 195-234 1-39 (140)
277 KOG0652 26S proteasome regulat 93.6 1.3 2.8E-05 43.5 12.2 47 171-217 171-228 (424)
278 COG0714 MoxR-like ATPases [Gen 93.6 0.15 3.2E-06 54.7 6.7 68 171-247 24-91 (329)
279 PRK07952 DNA replication prote 93.6 0.089 1.9E-06 53.1 4.6 51 180-232 85-135 (244)
280 COG1419 FlhF Flagellar GTP-bin 93.6 0.073 1.6E-06 56.5 4.1 23 194-216 203-226 (407)
281 PF00448 SRP54: SRP54-type pro 93.5 0.11 2.4E-06 50.7 5.1 56 195-252 2-58 (196)
282 PF03308 ArgK: ArgK protein; 93.5 0.078 1.7E-06 52.7 4.0 39 179-217 14-52 (266)
283 PRK13949 shikimate kinase; Pro 93.5 0.051 1.1E-06 51.8 2.7 23 195-217 2-24 (169)
284 COG0467 RAD55 RecA-superfamily 93.5 0.098 2.1E-06 54.1 5.0 58 185-246 14-71 (260)
285 PRK11889 flhF flagellar biosyn 93.5 0.083 1.8E-06 56.2 4.4 25 193-217 240-264 (436)
286 PF14532 Sigma54_activ_2: Sigm 93.5 0.038 8.3E-07 50.7 1.7 44 174-217 1-44 (138)
287 TIGR00554 panK_bact pantothena 93.4 0.061 1.3E-06 55.7 3.3 23 194-216 62-84 (290)
288 COG1124 DppF ABC-type dipeptid 93.4 0.092 2E-06 51.4 4.2 23 194-216 33-55 (252)
289 TIGR00064 ftsY signal recognit 93.4 0.12 2.5E-06 53.4 5.3 38 193-232 71-108 (272)
290 KOG0728 26S proteasome regulat 93.4 0.92 2E-05 44.3 10.7 147 173-328 149-332 (404)
291 PF01078 Mg_chelatase: Magnesi 93.4 0.11 2.4E-06 50.2 4.7 42 171-216 3-44 (206)
292 COG0468 RecA RecA/RadA recombi 93.4 0.18 4E-06 51.5 6.6 59 183-243 49-107 (279)
293 TIGR02012 tigrfam_recA protein 93.4 0.12 2.6E-06 54.1 5.3 56 181-238 41-97 (321)
294 PRK12339 2-phosphoglycerate ki 93.4 0.065 1.4E-06 52.3 3.1 24 194-217 3-26 (197)
295 PRK08181 transposase; Validate 93.3 0.6 1.3E-05 48.0 10.3 36 195-232 107-142 (269)
296 TIGR02238 recomb_DMC1 meiotic 93.3 0.18 4E-06 53.1 6.7 69 180-249 82-154 (313)
297 PRK00300 gmk guanylate kinase; 93.3 0.056 1.2E-06 53.7 2.7 24 194-217 5-28 (205)
298 cd00983 recA RecA is a bacter 93.3 0.12 2.5E-06 54.3 5.1 56 181-238 41-97 (325)
299 PRK10078 ribose 1,5-bisphospho 93.3 0.059 1.3E-06 52.4 2.8 23 195-217 3-25 (186)
300 cd01120 RecA-like_NTPases RecA 93.3 0.06 1.3E-06 51.0 2.9 39 196-236 1-39 (165)
301 cd00071 GMPK Guanosine monopho 93.3 0.054 1.2E-06 49.5 2.3 22 196-217 1-22 (137)
302 TIGR03878 thermo_KaiC_2 KaiC d 93.3 0.19 4E-06 51.8 6.6 40 193-234 35-74 (259)
303 COG0563 Adk Adenylate kinase a 93.3 0.056 1.2E-06 51.7 2.5 22 196-217 2-23 (178)
304 PF08298 AAA_PrkA: PrkA AAA do 93.3 0.096 2.1E-06 54.7 4.3 47 170-216 60-110 (358)
305 cd00464 SK Shikimate kinase (S 93.3 0.056 1.2E-06 50.7 2.5 21 197-217 2-22 (154)
306 cd00820 PEPCK_HprK Phosphoenol 93.2 0.073 1.6E-06 45.5 2.9 22 194-215 15-36 (107)
307 PRK06761 hypothetical protein; 93.2 0.12 2.6E-06 53.1 4.9 23 195-217 4-26 (282)
308 PRK10463 hydrogenase nickel in 93.2 0.15 3.4E-06 52.3 5.7 26 192-217 102-127 (290)
309 COG3640 CooC CO dehydrogenase 93.2 0.1 2.2E-06 50.7 4.1 21 196-216 2-22 (255)
310 PRK03846 adenylylsulfate kinas 93.2 0.076 1.6E-06 52.2 3.4 25 193-217 23-47 (198)
311 KOG0473 Leucine-rich repeat pr 93.1 0.0029 6.2E-08 60.5 -6.3 86 536-621 38-123 (326)
312 PF02374 ArsA_ATPase: Anion-tr 93.1 0.074 1.6E-06 56.0 3.3 46 195-242 2-47 (305)
313 PLN02348 phosphoribulokinase 93.1 0.17 3.7E-06 54.1 6.0 26 192-217 47-72 (395)
314 PRK14530 adenylate kinase; Pro 93.1 0.061 1.3E-06 53.7 2.6 23 195-217 4-26 (215)
315 TIGR02902 spore_lonB ATP-depen 93.1 0.092 2E-06 60.0 4.3 45 171-217 65-109 (531)
316 TIGR01313 therm_gnt_kin carboh 93.1 0.053 1.1E-06 51.5 2.0 21 197-217 1-21 (163)
317 PF03193 DUF258: Protein of un 93.0 0.15 3.2E-06 47.4 4.8 36 177-217 23-58 (161)
318 PLN03187 meiotic recombination 93.0 0.19 4.1E-06 53.4 6.2 68 181-249 113-184 (344)
319 TIGR00602 rad24 checkpoint pro 93.0 0.1 2.3E-06 60.0 4.6 50 168-217 81-133 (637)
320 TIGR01241 FtsH_fam ATP-depende 93.0 0.11 2.3E-06 59.3 4.7 50 168-217 52-111 (495)
321 PF13504 LRR_7: Leucine rich r 93.0 0.07 1.5E-06 28.6 1.5 15 564-578 2-16 (17)
322 PRK13948 shikimate kinase; Pro 93.0 0.077 1.7E-06 50.9 3.0 25 193-217 9-33 (182)
323 KOG1969 DNA replication checkp 93.0 0.18 4E-06 56.9 6.2 56 192-252 324-379 (877)
324 PF02562 PhoH: PhoH-like prote 93.0 0.092 2E-06 51.1 3.5 52 176-231 5-56 (205)
325 KOG3347 Predicted nucleotide k 93.0 0.069 1.5E-06 47.6 2.3 23 194-216 7-29 (176)
326 PF08423 Rad51: Rad51; InterP 93.0 0.17 3.6E-06 51.9 5.6 66 181-247 25-94 (256)
327 PRK13975 thymidylate kinase; P 93.0 0.072 1.6E-06 52.4 2.9 23 195-217 3-25 (196)
328 PRK05057 aroK shikimate kinase 92.9 0.074 1.6E-06 50.9 2.8 24 194-217 4-27 (172)
329 KOG1532 GTPase XAB1, interacts 92.9 0.083 1.8E-06 52.1 3.1 24 194-217 19-42 (366)
330 PF08477 Miro: Miro-like prote 92.9 0.073 1.6E-06 47.3 2.6 21 197-217 2-22 (119)
331 PRK09435 membrane ATPase/prote 92.9 0.13 2.8E-06 54.4 4.7 36 182-217 44-79 (332)
332 cd02027 APSK Adenosine 5'-phos 92.9 0.066 1.4E-06 49.8 2.4 22 196-217 1-22 (149)
333 PRK06067 flagellar accessory p 92.8 0.23 4.9E-06 50.4 6.4 61 180-244 11-71 (234)
334 KOG2228 Origin recognition com 92.8 0.93 2E-05 46.7 10.3 80 170-252 23-106 (408)
335 cd01133 F1-ATPase_beta F1 ATP 92.8 0.13 2.7E-06 52.5 4.4 51 194-246 69-121 (274)
336 TIGR02239 recomb_RAD51 DNA rep 92.8 0.2 4.3E-06 53.0 6.1 64 178-241 80-147 (316)
337 TIGR01243 CDC48 AAA family ATP 92.8 0.11 2.3E-06 62.5 4.5 50 168-217 175-235 (733)
338 PF00625 Guanylate_kin: Guanyl 92.8 0.095 2E-06 50.8 3.4 34 194-229 2-35 (183)
339 PRK14737 gmk guanylate kinase; 92.8 0.091 2E-06 50.8 3.2 24 194-217 4-27 (186)
340 PLN03186 DNA repair protein RA 92.8 0.2 4.4E-06 53.3 6.1 70 178-248 107-180 (342)
341 COG1224 TIP49 DNA helicase TIP 92.8 0.17 3.7E-06 52.1 5.2 49 169-217 37-88 (450)
342 KOG3864 Uncharacterized conser 92.8 0.011 2.3E-07 55.8 -3.0 36 738-773 101-136 (221)
343 PRK13946 shikimate kinase; Pro 92.7 0.078 1.7E-06 51.4 2.7 24 194-217 10-33 (184)
344 COG1100 GTPase SAR1 and relate 92.7 0.12 2.7E-06 51.8 4.2 23 195-217 6-28 (219)
345 PRK09354 recA recombinase A; P 92.7 0.17 3.6E-06 53.6 5.2 57 180-238 45-102 (349)
346 cd01672 TMPK Thymidine monopho 92.7 0.16 3.5E-06 50.0 5.0 22 196-217 2-23 (200)
347 COG0194 Gmk Guanylate kinase [ 92.6 0.094 2E-06 49.2 2.9 24 194-217 4-27 (191)
348 COG0542 clpA ATP-binding subun 92.6 0.12 2.5E-06 60.1 4.3 154 170-326 169-345 (786)
349 COG0703 AroK Shikimate kinase 92.6 0.085 1.8E-06 49.2 2.6 28 195-224 3-30 (172)
350 PRK13768 GTPase; Provisional 92.6 0.12 2.6E-06 52.9 4.0 36 194-231 2-37 (253)
351 TIGR00073 hypB hydrogenase acc 92.6 0.091 2E-06 52.1 3.1 26 192-217 20-45 (207)
352 TIGR01287 nifH nitrogenase iro 92.6 0.076 1.7E-06 55.5 2.6 23 195-217 1-23 (275)
353 PF04665 Pox_A32: Poxvirus A32 92.6 0.12 2.7E-06 51.4 3.9 34 196-231 15-48 (241)
354 PF03266 NTPase_1: NTPase; In 92.6 0.079 1.7E-06 50.2 2.4 21 197-217 2-22 (168)
355 TIGR03881 KaiC_arch_4 KaiC dom 92.6 0.29 6.3E-06 49.5 6.7 52 181-234 7-58 (229)
356 PRK05342 clpX ATP-dependent pr 92.6 0.13 2.9E-06 56.2 4.5 48 170-217 70-131 (412)
357 COG0237 CoaE Dephospho-CoA kin 92.5 0.092 2E-06 51.1 2.9 23 194-216 2-24 (201)
358 COG0542 clpA ATP-binding subun 92.5 1.7 3.8E-05 50.8 13.4 46 171-216 491-543 (786)
359 COG1126 GlnQ ABC-type polar am 92.5 0.15 3.2E-06 49.0 4.1 36 194-232 28-63 (240)
360 CHL00176 ftsH cell division pr 92.5 0.085 1.8E-06 61.2 3.0 49 169-217 181-239 (638)
361 KOG0733 Nuclear AAA ATPase (VC 92.5 0.17 3.7E-06 55.9 5.0 50 168-217 187-246 (802)
362 TIGR00176 mobB molybdopterin-g 92.4 0.081 1.8E-06 49.4 2.2 22 196-217 1-22 (155)
363 PF00005 ABC_tran: ABC transpo 92.4 0.1 2.2E-06 47.8 2.8 24 194-217 11-34 (137)
364 PRK10865 protein disaggregatio 92.4 0.2 4.4E-06 60.7 6.1 47 171-217 568-621 (857)
365 TIGR00750 lao LAO/AO transport 92.3 0.14 3E-06 54.0 4.2 35 183-217 23-57 (300)
366 TIGR03499 FlhF flagellar biosy 92.3 0.11 2.3E-06 54.2 3.3 24 194-217 194-217 (282)
367 PF13245 AAA_19: Part of AAA d 92.3 0.17 3.8E-06 40.5 3.7 23 194-216 10-33 (76)
368 PF13521 AAA_28: AAA domain; P 92.3 0.091 2E-06 49.9 2.5 20 197-216 2-21 (163)
369 PRK14527 adenylate kinase; Pro 92.3 0.11 2.3E-06 50.9 3.0 24 194-217 6-29 (191)
370 PRK09825 idnK D-gluconate kina 92.3 0.099 2.2E-06 50.1 2.7 23 195-217 4-26 (176)
371 PRK08533 flagellar accessory p 92.3 0.23 5.1E-06 49.9 5.5 49 193-245 23-71 (230)
372 PRK08356 hypothetical protein; 92.2 0.12 2.6E-06 50.6 3.4 22 194-215 5-26 (195)
373 TIGR02173 cyt_kin_arch cytidyl 92.2 0.099 2.2E-06 50.1 2.7 22 196-217 2-23 (171)
374 cd01130 VirB11-like_ATPase Typ 92.2 0.081 1.8E-06 51.4 2.1 24 194-217 25-48 (186)
375 cd01878 HflX HflX subfamily. 92.2 0.2 4.3E-06 49.6 5.0 25 193-217 40-64 (204)
376 KOG2227 Pre-initiation complex 92.2 0.5 1.1E-05 50.8 7.9 82 169-250 148-231 (529)
377 TIGR02030 BchI-ChlI magnesium 92.2 0.16 3.4E-06 54.0 4.3 45 171-217 4-48 (337)
378 PLN02796 D-glycerate 3-kinase 92.2 0.26 5.6E-06 51.9 5.8 25 193-217 99-123 (347)
379 TIGR00041 DTMP_kinase thymidyl 92.2 0.22 4.8E-06 48.8 5.2 23 195-217 4-26 (195)
380 cd03222 ABC_RNaseL_inhibitor T 92.2 0.19 4.2E-06 48.0 4.5 24 194-217 25-48 (177)
381 PRK04182 cytidylate kinase; Pr 92.1 0.1 2.2E-06 50.4 2.7 22 196-217 2-23 (180)
382 PLN02200 adenylate kinase fami 92.1 0.12 2.5E-06 52.2 3.1 24 194-217 43-66 (234)
383 PF13504 LRR_7: Leucine rich r 92.1 0.097 2.1E-06 28.1 1.4 17 586-602 1-17 (17)
384 PRK04328 hypothetical protein; 92.1 0.33 7.2E-06 49.6 6.5 52 181-234 10-61 (249)
385 PF06309 Torsin: Torsin; Inte 92.1 0.28 6.1E-06 43.1 5.0 47 171-217 25-76 (127)
386 cd01983 Fer4_NifH The Fer4_Nif 92.1 0.098 2.1E-06 44.4 2.2 22 196-217 1-22 (99)
387 PRK14493 putative bifunctional 92.1 0.15 3.1E-06 52.6 3.8 35 195-232 2-36 (274)
388 cd03269 ABC_putative_ATPase Th 92.0 0.16 3.5E-06 50.5 4.1 34 194-230 26-59 (210)
389 TIGR01166 cbiO cobalt transpor 92.0 0.18 3.9E-06 49.3 4.3 24 194-217 18-41 (190)
390 TIGR00382 clpX endopeptidase C 92.0 0.2 4.2E-06 54.7 4.9 48 170-217 76-139 (413)
391 cd03229 ABC_Class3 This class 92.0 0.19 4.2E-06 48.4 4.4 23 194-216 26-48 (178)
392 TIGR00960 3a0501s02 Type II (G 92.0 0.18 3.9E-06 50.5 4.4 34 194-230 29-62 (216)
393 TIGR03574 selen_PSTK L-seryl-t 92.0 0.088 1.9E-06 54.0 2.2 22 196-217 1-22 (249)
394 PF06068 TIP49: TIP49 C-termin 92.0 0.5 1.1E-05 49.7 7.6 53 170-224 23-78 (398)
395 PTZ00494 tuzin-like protein; P 92.0 3.3 7.1E-05 44.6 13.4 74 169-250 369-443 (664)
396 PLN00020 ribulose bisphosphate 92.0 0.11 2.4E-06 54.5 2.9 25 193-217 147-171 (413)
397 cd03221 ABCF_EF-3 ABCF_EF-3 E 92.0 0.18 3.9E-06 46.6 4.0 24 194-217 26-49 (144)
398 cd02022 DPCK Dephospho-coenzym 92.0 0.095 2.1E-06 50.6 2.2 21 196-216 1-21 (179)
399 PRK15453 phosphoribulokinase; 92.0 0.13 2.8E-06 52.3 3.2 24 193-216 4-27 (290)
400 cd04139 RalA_RalB RalA/RalB su 92.0 0.13 2.8E-06 48.7 3.2 22 196-217 2-23 (164)
401 PRK13407 bchI magnesium chelat 92.0 0.14 3.1E-06 54.2 3.7 45 170-216 7-51 (334)
402 PF01926 MMR_HSR1: 50S ribosom 91.9 0.12 2.6E-06 45.7 2.7 21 197-217 2-22 (116)
403 cd01858 NGP_1 NGP-1. Autoanti 91.9 0.23 5E-06 46.7 4.8 43 175-217 82-125 (157)
404 PRK03731 aroL shikimate kinase 91.9 0.11 2.4E-06 49.8 2.6 23 195-217 3-25 (171)
405 cd03297 ABC_ModC_molybdenum_tr 91.9 0.21 4.5E-06 49.9 4.7 23 195-217 24-46 (214)
406 cd03255 ABC_MJ0796_Lo1CDE_FtsE 91.9 0.19 4.1E-06 50.4 4.3 24 194-217 30-53 (218)
407 TIGR02673 FtsE cell division A 91.9 0.19 4.2E-06 50.1 4.4 34 194-230 28-61 (214)
408 cd02117 NifH_like This family 91.9 0.11 2.5E-06 51.7 2.7 22 195-216 1-22 (212)
409 PRK09183 transposase/IS protei 91.8 0.13 2.8E-06 52.8 3.1 24 194-217 102-125 (259)
410 COG1084 Predicted GTPase [Gene 91.8 2.4 5.2E-05 43.8 11.9 26 192-217 166-191 (346)
411 PF13306 LRR_5: Leucine rich r 91.8 0.5 1.1E-05 42.5 6.8 83 533-618 5-90 (129)
412 PRK06835 DNA replication prote 91.8 0.16 3.4E-06 53.9 3.8 36 195-232 184-219 (329)
413 PRK05973 replicative DNA helic 91.8 0.4 8.7E-06 48.0 6.5 48 194-245 64-111 (237)
414 PF10662 PduV-EutP: Ethanolami 91.8 0.13 2.8E-06 46.6 2.6 23 195-217 2-24 (143)
415 cd01124 KaiC KaiC is a circadi 91.8 0.13 2.9E-06 50.0 3.1 45 196-244 1-45 (187)
416 KOG0738 AAA+-type ATPase [Post 91.8 0.17 3.6E-06 52.8 3.8 46 172-217 213-268 (491)
417 CHL00081 chlI Mg-protoporyphyr 91.7 0.16 3.4E-06 54.1 3.7 47 169-217 15-61 (350)
418 PRK13230 nitrogenase reductase 91.7 0.12 2.7E-06 54.0 2.9 22 195-216 2-23 (279)
419 TIGR01817 nifA Nif-specific re 91.7 0.31 6.7E-06 56.2 6.4 50 168-217 193-242 (534)
420 cd03225 ABC_cobalt_CbiO_domain 91.7 0.19 4.1E-06 50.1 4.1 24 194-217 27-50 (211)
421 PRK10416 signal recognition pa 91.7 0.15 3.1E-06 54.0 3.4 25 193-217 113-137 (318)
422 cd03265 ABC_DrrA DrrA is the A 91.7 0.2 4.2E-06 50.4 4.2 34 194-230 26-59 (220)
423 COG1120 FepC ABC-type cobalami 91.7 0.22 4.7E-06 50.2 4.4 35 194-231 28-62 (258)
424 COG0464 SpoVK ATPases of the A 91.6 0.88 1.9E-05 52.0 10.0 156 170-330 241-426 (494)
425 COG4088 Predicted nucleotide k 91.6 0.13 2.7E-06 48.8 2.4 22 195-216 2-23 (261)
426 PTZ00035 Rad51 protein; Provis 91.6 0.45 9.9E-06 50.8 7.0 62 180-241 104-169 (337)
427 PF00142 Fer4_NifH: 4Fe-4S iro 91.6 0.19 4.1E-06 50.2 3.8 41 195-237 1-41 (273)
428 cd03114 ArgK-like The function 91.6 0.12 2.6E-06 47.9 2.4 22 196-217 1-22 (148)
429 cd03116 MobB Molybdenum is an 91.6 0.15 3.3E-06 47.7 3.0 23 195-217 2-24 (159)
430 KOG0729 26S proteasome regulat 91.5 0.41 8.8E-06 47.1 5.9 48 170-217 176-234 (435)
431 PF03029 ATP_bind_1: Conserved 91.5 0.15 3.3E-06 51.4 3.2 32 199-232 1-32 (238)
432 PRK08099 bifunctional DNA-bind 91.5 0.12 2.7E-06 56.3 2.7 26 192-217 217-242 (399)
433 cd03263 ABC_subfamily_A The AB 91.5 0.21 4.5E-06 50.2 4.2 34 194-230 28-61 (220)
434 PRK08116 hypothetical protein; 91.5 0.26 5.5E-06 50.9 4.9 35 195-231 115-149 (268)
435 PRK11608 pspF phage shock prot 91.5 0.17 3.7E-06 54.0 3.7 46 171-216 6-51 (326)
436 PRK10646 ADP-binding protein; 91.5 0.27 5.9E-06 45.2 4.4 41 177-217 11-51 (153)
437 PRK13540 cytochrome c biogenes 91.4 0.22 4.7E-06 49.1 4.2 35 194-231 27-61 (200)
438 PF02367 UPF0079: Uncharacteri 91.4 0.19 4.1E-06 44.4 3.3 24 194-217 15-38 (123)
439 PTZ00088 adenylate kinase 1; P 91.4 0.13 2.7E-06 51.6 2.5 22 196-217 8-29 (229)
440 PRK05537 bifunctional sulfate 91.4 0.25 5.3E-06 56.8 5.1 45 173-217 371-415 (568)
441 PRK14722 flhF flagellar biosyn 91.4 0.17 3.7E-06 54.3 3.6 24 194-217 137-160 (374)
442 COG4240 Predicted kinase [Gene 91.4 0.2 4.4E-06 48.1 3.6 55 193-248 49-103 (300)
443 cd01428 ADK Adenylate kinase ( 91.4 0.13 2.7E-06 50.5 2.5 21 197-217 2-22 (194)
444 cd03293 ABC_NrtD_SsuB_transpor 91.4 0.23 5E-06 49.9 4.4 24 194-217 30-53 (220)
445 cd03235 ABC_Metallic_Cations A 91.4 0.21 4.6E-06 49.8 4.1 24 194-217 25-48 (213)
446 cd03264 ABC_drug_resistance_li 91.4 0.21 4.6E-06 49.7 4.1 32 196-230 27-58 (211)
447 TIGR03864 PQQ_ABC_ATP ABC tran 91.4 0.21 4.6E-06 50.8 4.1 34 194-230 27-60 (236)
448 PRK14974 cell division protein 91.3 0.24 5.2E-06 52.5 4.6 24 193-216 139-162 (336)
449 PRK01184 hypothetical protein; 91.3 0.14 3.1E-06 49.6 2.8 21 195-216 2-22 (184)
450 cd02040 NifH NifH gene encodes 91.3 0.2 4.4E-06 52.2 4.0 39 195-235 2-40 (270)
451 cd01121 Sms Sms (bacterial rad 91.3 0.25 5.4E-06 53.4 4.7 54 178-233 66-119 (372)
452 TIGR01618 phage_P_loop phage n 91.3 0.13 2.8E-06 50.8 2.4 23 194-216 12-34 (220)
453 PRK13541 cytochrome c biogenes 91.3 0.23 5.1E-06 48.7 4.2 24 194-217 26-49 (195)
454 PHA02244 ATPase-like protein 91.2 0.17 3.7E-06 53.6 3.3 43 171-217 96-142 (383)
455 TIGR01425 SRP54_euk signal rec 91.2 0.27 5.9E-06 53.7 4.9 24 194-217 100-123 (429)
456 PRK14532 adenylate kinase; Pro 91.2 0.14 3E-06 50.0 2.5 21 197-217 3-23 (188)
457 PRK13236 nitrogenase reductase 91.2 0.17 3.7E-06 53.3 3.4 25 192-216 4-28 (296)
458 cd03230 ABC_DR_subfamily_A Thi 91.2 0.24 5.2E-06 47.5 4.1 24 194-217 26-49 (173)
459 PRK13232 nifH nitrogenase redu 91.2 0.14 3.1E-06 53.3 2.8 22 195-216 2-23 (273)
460 KOG0735 AAA+-type ATPase [Post 91.2 0.66 1.4E-05 52.4 7.8 81 170-251 407-489 (952)
461 PRK00771 signal recognition pa 91.2 0.36 7.8E-06 53.2 5.9 25 193-217 94-118 (437)
462 cd01131 PilT Pilus retraction 91.2 0.21 4.6E-06 49.0 3.8 22 196-217 3-24 (198)
463 COG4608 AppF ABC-type oligopep 91.2 0.24 5.2E-06 49.7 4.1 35 194-231 39-73 (268)
464 smart00072 GuKc Guanylate kina 91.2 0.2 4.3E-06 48.6 3.5 24 194-217 2-25 (184)
465 COG0529 CysC Adenylylsulfate k 91.2 0.19 4.2E-06 46.5 3.1 25 193-217 22-46 (197)
466 PRK14531 adenylate kinase; Pro 91.2 0.15 3.3E-06 49.3 2.7 22 196-217 4-25 (183)
467 PRK12724 flagellar biosynthesi 91.1 0.19 4.2E-06 54.3 3.6 24 194-217 223-246 (432)
468 cd03224 ABC_TM1139_LivF_branch 91.1 0.26 5.6E-06 49.6 4.5 34 194-230 26-59 (222)
469 cd03226 ABC_cobalt_CbiO_domain 91.1 0.26 5.6E-06 48.9 4.4 23 194-216 26-48 (205)
470 TIGR03880 KaiC_arch_3 KaiC dom 91.1 0.49 1.1E-05 47.6 6.5 59 182-244 4-62 (224)
471 PRK10584 putative ABC transpor 91.1 0.25 5.4E-06 49.9 4.3 23 194-216 36-58 (228)
472 cd03256 ABC_PhnC_transporter A 91.1 0.25 5.4E-06 50.4 4.4 24 194-217 27-50 (241)
473 smart00173 RAS Ras subfamily o 91.1 0.16 3.4E-06 48.2 2.7 22 196-217 2-23 (164)
474 TIGR02211 LolD_lipo_ex lipopro 91.1 0.26 5.6E-06 49.5 4.4 34 194-230 31-64 (221)
475 TIGR02315 ABC_phnC phosphonate 91.1 0.25 5.4E-06 50.5 4.4 34 194-230 28-61 (243)
476 TIGR02639 ClpA ATP-dependent C 91.1 0.27 5.8E-06 58.9 5.2 47 171-217 454-507 (731)
477 PRK06526 transposase; Provisio 91.0 0.15 3.3E-06 52.0 2.6 24 194-217 98-121 (254)
478 PRK13695 putative NTPase; Prov 91.0 0.15 3.3E-06 49.0 2.5 22 196-217 2-23 (174)
479 COG1763 MobB Molybdopterin-gua 91.0 0.16 3.4E-06 47.3 2.5 36 194-231 2-37 (161)
480 KOG0733 Nuclear AAA ATPase (VC 91.0 0.15 3.2E-06 56.3 2.7 128 195-329 546-694 (802)
481 TIGR01184 ntrCD nitrate transp 91.0 0.27 5.8E-06 49.7 4.4 24 194-217 11-34 (230)
482 cd01862 Rab7 Rab7 subfamily. 91.0 0.16 3.5E-06 48.5 2.8 22 196-217 2-23 (172)
483 cd03301 ABC_MalK_N The N-termi 91.0 0.27 5.9E-06 49.0 4.4 24 194-217 26-49 (213)
484 PRK06921 hypothetical protein; 91.0 0.2 4.3E-06 51.6 3.5 37 194-232 117-154 (266)
485 TIGR01277 thiQ thiamine ABC tr 91.0 0.27 5.8E-06 49.1 4.4 34 194-230 24-57 (213)
486 COG1121 ZnuC ABC-type Mn/Zn tr 91.0 0.27 5.9E-06 49.2 4.3 33 195-230 31-63 (254)
487 cd02026 PRK Phosphoribulokinas 91.0 0.14 2.9E-06 53.0 2.3 21 196-216 1-21 (273)
488 PRK08699 DNA polymerase III su 91.0 1.9 4.1E-05 45.8 10.9 128 194-326 21-184 (325)
489 PLN02165 adenylate isopentenyl 91.0 0.18 3.9E-06 52.8 3.1 25 193-217 42-66 (334)
490 PF13086 AAA_11: AAA domain; P 90.9 0.23 5E-06 50.3 4.0 52 196-247 19-75 (236)
491 cd03261 ABC_Org_Solvent_Resist 90.9 0.27 5.8E-06 49.9 4.4 24 194-217 26-49 (235)
492 PRK11034 clpA ATP-dependent Cl 90.9 0.29 6.3E-06 58.0 5.2 47 171-217 458-511 (758)
493 PRK05703 flhF flagellar biosyn 90.9 0.24 5.2E-06 54.7 4.3 39 194-232 221-259 (424)
494 cd03259 ABC_Carb_Solutes_like 90.9 0.28 6E-06 49.0 4.4 23 194-216 26-48 (213)
495 cd03238 ABC_UvrA The excision 90.9 0.17 3.7E-06 48.4 2.7 23 194-216 21-43 (176)
496 cd02034 CooC The accessory pro 90.9 0.17 3.7E-06 44.5 2.5 21 197-217 2-22 (116)
497 PRK11629 lolD lipoprotein tran 90.9 0.28 6E-06 49.8 4.4 34 194-230 35-68 (233)
498 KOG0734 AAA+-type ATPase conta 90.9 0.26 5.7E-06 53.5 4.2 50 170-219 303-362 (752)
499 cd03296 ABC_CysA_sulfate_impor 90.9 0.27 5.8E-06 50.1 4.3 24 194-217 28-51 (239)
500 cd04155 Arl3 Arl3 subfamily. 90.8 0.16 3.5E-06 48.6 2.6 24 194-217 14-37 (173)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=1.5e-78 Score=702.84 Aligned_cols=790 Identities=26% Similarity=0.367 Sum_probs=570.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCChhHHHHHHHHHHHHhhhhHHH
Q 002663 3 EAAVNFALETLGPLLVEEIRLFGGVRKEVQSIKSELESLRSFLKDADTRAAVEELEGGGEESVRTWVKQLRDEAYRIEDF 82 (895)
Q Consensus 3 ~~~v~~~~~kl~~~l~~~~~~~~~~~~~~~~l~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~wl~~l~~~~~~~ed~ 82 (895)
++.++..++|+.+++.++...+.+.++++..|+++|..++++++|+++++. .. ..+..|.+.+++++|++||.
T Consensus 2 ~~~~s~~~~~~~~~l~~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a~~~-~~------~~~~~~~e~~~~~~~~~e~~ 74 (889)
T KOG4658|consen 2 GACVSFGVEKLDQLLNRESECLDGKDNYILELKENLKALQSALEDLDAKRD-DL------ERRVNWEEDVGDLVYLAEDI 74 (889)
T ss_pred CeEEEEehhhHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhhcc-hH------HHHHHHHHHHHHHHHHHHHH
Confidence 445667788999999999999999999999999999999999999999976 55 78999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCcch-h--hhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccCCccccccCCCCCCCccccccC
Q 002663 83 IDEYALMVAKLPHESGLVG-V--LHRISRFIKKLRRRRGVATEIQDSESALADIKRRGESYRFRSIDEPSRSGTRNVIPH 159 (895)
Q Consensus 83 ld~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~r~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (895)
++.|....... +..+... . ..+.. +-..+++..+..+..+.+++.++.+....+.........+... .+.
T Consensus 75 ~~~~~v~~~~~-~~~~~l~~~~~~~~~~---c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~---~~~ 147 (889)
T KOG4658|consen 75 IWLFLVEEIER-KANDLLSTRSVERQRL---CLCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESL---DPR 147 (889)
T ss_pred HHHHHHHHHHH-HHhHHhhhhHHHHHHH---hhhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccc---cch
Confidence 99999876652 1111110 0 11111 1113444555555555555555555554444332111100000 011
Q ss_pred CCCCCCCCCCCCceeechhhHHHHHHHHhcCCCCceEEEEEcCCCchhhHHHHHHhcccc-ccCCCCceEEEEeCCCCCH
Q 002663 160 DSPVRSFFVEDDEVVGIESIKDKLIDLMVNGRSKSSVVAVVGEGGLGKTTLAGKLFNNEG-LKTHFSCRAWVTVGKEYNK 238 (895)
Q Consensus 160 ~~~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~-~~~~F~~~~wv~~~~~~~~ 238 (895)
..+...+.....+ ||.++.++++.+.|..++ ..+|||+||||+||||||+.++|+.. +..+||.++||.||+.++.
T Consensus 148 ~~~e~~~~~~~~~-VG~e~~~~kl~~~L~~d~--~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~ 224 (889)
T KOG4658|consen 148 EKVETRPIQSESD-VGLETMLEKLWNRLMEDD--VGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTT 224 (889)
T ss_pred hhcccCCCCcccc-ccHHHHHHHHHHHhccCC--CCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccH
Confidence 1223333333444 999999999999999866 48999999999999999999999977 9999999999999999999
Q ss_pred HHHHHHHHHHHHhccCCCCCCC-CccC---cCc---------cc------cHHHHHHhcCCCCCCcEEEEEcCchhhhhh
Q 002663 239 NDLLRTIIKEFHRLSKHGRDGP-DRHA---EGP---------LE------GQKDVEHALLDNKKCSRIIVTTRHMNVAKF 299 (895)
Q Consensus 239 ~~l~~~i~~~l~~~~~~~~~~~-~~~~---~~~---------L~------~~~~l~~~l~~~~~gs~iivTTR~~~v~~~ 299 (895)
.+++.+|++.++.......... +... .+. |+ +|+.+..++|...+||||++|||++.|+..
T Consensus 225 ~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~ 304 (889)
T KOG4658|consen 225 RKIQQTILERLGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGR 304 (889)
T ss_pred HhHHHHHHHHhccCCcccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhc
Confidence 9999999998887533321211 0000 001 11 788899999999999999999999999998
Q ss_pred -hccCCCcceeeccCCChhhHHHHHHHhhcCCCCCC-CCchhHHHH----------HHHHHHhhhccCCCCHHHHHhhhh
Q 002663 300 -CKSSSSVRIHELETLPPDEAWKLFCRKAFGPSSGG-CCPSELKEF----------FIVALGGLLSTKNRIVSEWKKLFD 367 (895)
Q Consensus 300 -~~~~~~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~-~~~~~l~~~----------ai~~~g~~l~~~~~~~~~w~~~~~ 367 (895)
+++. ..+++++|+++|||.||++.||...... ...+++.+. |+.++|+.|+.|.. .++|+++.+
T Consensus 305 ~m~~~---~~~~v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t-~~eW~~~~~ 380 (889)
T KOG4658|consen 305 AMGVD---YPIEVECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKT-VQEWRRALN 380 (889)
T ss_pred cccCC---ccccccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCc-HHHHHHHHc
Confidence 6543 7999999999999999999999884322 222344332 99999999999987 889999985
Q ss_pred c---------CCChHHHHHHHhcccCCCChhhhhHhcccccCCCCcccchhhHHHHHHHcCcccc-cCCCCHHHHHHHHH
Q 002663 368 S---------DPHLKDCNRVLSEGYYDLPHHLKSCLLYFGLFPESCKINRGRLIRLWIAEGFVQY-RKRLTSEQVAAEYL 437 (895)
Q Consensus 368 ~---------~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~fp~~~~i~~~~li~~w~a~g~~~~-~~~~~~~~~~~~~l 437 (895)
. ......+++++++||+.||++.|.||+|||+||+||.|+++.|+.+|+||||+.+ ..+..+++.|..|+
T Consensus 381 ~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i 460 (889)
T KOG4658|consen 381 VLKSSLAADFSGMEESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYI 460 (889)
T ss_pred cccccccCCCCchhhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHH
Confidence 3 1235678999999999999889999999999999999999999999999999987 44678899999999
Q ss_pred HHHhhCCceeeeecCCCCceeEEEecHHHHHHHHHHhh-----hcCcEEEeC-----CCCCCCCCCceEEEEeccCCccc
Q 002663 438 DELIDRSLVQVSNREIPGRAIICQVHDLMHEIIIRKTE-----ELGFGRLLN-----GEDSSHCSKTRRITIQRSIDDGA 507 (895)
Q Consensus 438 ~~L~~~sll~~~~~~~~~~~~~~~mhdli~~~~~~~~~-----~~~~~~~~~-----~~~~~~~~~~~~l~l~~~~~~~~ 507 (895)
.+|++++|+...... ++..+|+|||+||++|.++++ +++++...+ ......+...|+++++.+.....
T Consensus 461 ~~LV~~~Ll~~~~~~--~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~ 538 (889)
T KOG4658|consen 461 EELVRASLLIEERDE--GRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHI 538 (889)
T ss_pred HHHHHHHHHhhcccc--cceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchhhc
Confidence 999999999987754 566789999999999999999 666333322 11222445689999999988887
Q ss_pred ccccCCcceeEEEEEccCCCCccchhcccCCCceeeEEecCCCC-CCcCccccccccCCCeEeecCCCcccccccccCcC
Q 002663 508 LESIKDWKVRSVILFNVDKLPDSFMKSCIANFKLMKVLDLEDSP-INYLPEGVGNLFNLHLLNARNTKLKIIPKSIGNLL 586 (895)
Q Consensus 508 ~~~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~-~~~l~~~i~~l~~Lr~L~L~~~~l~~lp~~i~~l~ 586 (895)
.....++++++|.+..+..........+|..++.|++|||++|. +..+|++|+.|.|||||+++++.+..+|..+++|+
T Consensus 539 ~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk 618 (889)
T KOG4658|consen 539 AGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLK 618 (889)
T ss_pred cCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHH
Confidence 78888889999999987642234555678999999999999865 67999999999999999999999999999999999
Q ss_pred CCcEEEcCcc-cccccchhhhccccCCeEEeecccccccccccccccccccccccCcccceEEeeeecChHHHHHhhccc
Q 002663 587 SLEILVLART-FVSELPEEIRNLKKLRSLIVFHYKYITGSIIPTEVAAKIHRGFGSLRGLLVLSTIEADSQVLKELMMLR 665 (895)
Q Consensus 587 ~L~~L~L~~~-~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~l~~l~ 665 (895)
+|.+||+..+ .+..+|.....|++||+|.+..... ......-..+.+|.+|+.+.....+......+..+.
T Consensus 619 ~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~--------~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~ 690 (889)
T KOG4658|consen 619 KLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSAL--------SNDKLLLKELENLEHLENLSITISSVLLLEDLLGMT 690 (889)
T ss_pred hhheeccccccccccccchhhhcccccEEEeecccc--------ccchhhHHhhhcccchhhheeecchhHhHhhhhhhH
Confidence 9999999998 6666666666799999999987431 111122223455555555555444443445555555
Q ss_pred cCcEEEEEec--CCCcchHHHHhhccCCCCEEEEEecCcccccc--cccC-cC-CCcCccEEEEecc-CCCCCcccccCC
Q 002663 666 QLRMLSIRPQ--NGNGRDLCALIANLENVETLGVLMTSKEEILD--LQSL-SS-PPQHLRYLSLRGN-MKKLPDWILKLK 738 (895)
Q Consensus 666 ~L~~L~l~~~--~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~--l~~~-~~-~~~~L~~L~l~~~-~~~lp~~~~~l~ 738 (895)
+|+.+...-. ..........+..+.+|+.|.+..|...+... .... .. ..+++..+.+.++ ....+.|....+
T Consensus 691 ~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~ 770 (889)
T KOG4658|consen 691 RLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAP 770 (889)
T ss_pred HHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhhccC
Confidence 5553222110 11222355677788999999999987754321 0000 00 0113444444444 345677777789
Q ss_pred CcceEEEEeccCCCcchhhhccCccccceeeccccCCCe-EEEecCCCcccceeeeccCCCceeeEEccCcccccceEEE
Q 002663 739 NLIGLRLILSGLTEDPISILQALPNLLELMLHGGYDYEL-FHFEAGWFPKLRKLVLLNFEAVKLVIIEKGAMPDIRELWS 817 (895)
Q Consensus 739 ~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l 817 (895)
+|+.|.+..|....++++....+..++.+.+..+..... .....++|+++..+.+ .+++|+.+.+
T Consensus 771 ~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l--------------~~~~l~~~~v 836 (889)
T KOG4658|consen 771 HLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPL--------------SFLKLEELIV 836 (889)
T ss_pred cccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEeccc--------------Cccchhheeh
Confidence 999999999998888887777777776644433322222 2233333333333333 3444666666
Q ss_pred ccCCCCcccCccccccccCcEEEEEcC
Q 002663 818 GPCPLLMEIPIGIEHLRNLELFTFHDM 844 (895)
Q Consensus 818 ~~c~~l~~lp~~~~~l~~L~~L~l~~c 844 (895)
..|+.+..+| .+.++.+.+|
T Consensus 837 e~~p~l~~~P-------~~~~~~i~~~ 856 (889)
T KOG4658|consen 837 EECPKLGKLP-------LLSTLTIVGC 856 (889)
T ss_pred hcCcccccCc-------cccccceecc
Confidence 6666655444 4555555555
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=1.9e-56 Score=550.25 Aligned_cols=627 Identities=20% Similarity=0.215 Sum_probs=406.8
Q ss_pred CCCCceeechhhHHHHHHHHhcCCCCceEEEEEcCCCchhhHHHHHHhccccccCCCCceEEEEe---CCC---C-----
Q 002663 168 VEDDEVVGIESIKDKLIDLMVNGRSKSSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTV---GKE---Y----- 236 (895)
Q Consensus 168 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~---~~~---~----- 236 (895)
.+.+++|||+++++++.++|..+.+++++||||||||+||||||+++|+ ++..+|+..+|+.. +.. +
T Consensus 181 ~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~--~l~~~F~g~vfv~~~~v~~~~~~~~~~~~ 258 (1153)
T PLN03210 181 NDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFS--RLSRQFQSSVFIDRAFISKSMEIYSSANP 258 (1153)
T ss_pred cccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHH--HHhhcCCeEEEeeccccccchhhcccccc
Confidence 3456799999999999999987777899999999999999999999999 58889999888742 111 0
Q ss_pred ---C-HHHHHHHHHHHHHhccCCCCCCCCc-cC------cC---------ccccHHHHHHhcCCCCCCcEEEEEcCchhh
Q 002663 237 ---N-KNDLLRTIIKEFHRLSKHGRDGPDR-HA------EG---------PLEGQKDVEHALLDNKKCSRIIVTTRHMNV 296 (895)
Q Consensus 237 ---~-~~~l~~~i~~~l~~~~~~~~~~~~~-~~------~~---------~L~~~~~l~~~l~~~~~gs~iivTTR~~~v 296 (895)
. ...++..++.++...... ..... .. .+ ....|+.+.......++||+||||||++++
T Consensus 259 ~~~~~~~~l~~~~l~~il~~~~~--~~~~~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd~~v 336 (1153)
T PLN03210 259 DDYNMKLHLQRAFLSEILDKKDI--KIYHLGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDKHF 336 (1153)
T ss_pred cccchhHHHHHHHHHHHhCCCCc--ccCCHHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCcHHH
Confidence 1 123445555554332111 00000 00 01 112455555544455789999999999999
Q ss_pred hhhhccCCCcceeeccCCChhhHHHHHHHhhcCCCCCCCCchhHHH-H---------HHHHHHhhhccCCCCHHHHHhhh
Q 002663 297 AKFCKSSSSVRIHELETLPPDEAWKLFCRKAFGPSSGGCCPSELKE-F---------FIVALGGLLSTKNRIVSEWKKLF 366 (895)
Q Consensus 297 ~~~~~~~~~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~l~~-~---------ai~~~g~~l~~~~~~~~~w~~~~ 366 (895)
+..++.. .+|+|+.|++++||+||+++||+...+.....++.. + |++++|++|+.+. ..+|+.++
T Consensus 337 l~~~~~~---~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~--~~~W~~~l 411 (1153)
T PLN03210 337 LRAHGID---HIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRD--KEDWMDML 411 (1153)
T ss_pred HHhcCCC---eEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCC--HHHHHHHH
Confidence 9876544 799999999999999999999987643222223322 1 9999999999764 79999998
Q ss_pred hc--CCChHHHHHHHhcccCCCCh-hhhhHhcccccCCCCcccchhhHHHHHHHcCcccccCCCCHHHHHHHHHHHHhhC
Q 002663 367 DS--DPHLKDCNRVLSEGYYDLPH-HLKSCLLYFGLFPESCKINRGRLIRLWIAEGFVQYRKRLTSEQVAAEYLDELIDR 443 (895)
Q Consensus 367 ~~--~~~~~~i~~~l~~sy~~L~~-~~k~~fl~~a~fp~~~~i~~~~li~~w~a~g~~~~~~~~~~~~~~~~~l~~L~~~ 443 (895)
++ ......+.++|++||+.|++ ..|.||+++|+||.+..++ .+..|.+.+... +...++.|+++
T Consensus 412 ~~L~~~~~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~----------~~~~l~~L~~k 478 (1153)
T PLN03210 412 PRLRNGLDGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVN---DIKLLLANSDLD----------VNIGLKNLVDK 478 (1153)
T ss_pred HHHHhCccHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHH---HHHHHHHhcCCC----------chhChHHHHhc
Confidence 54 22346799999999999987 5999999999999886554 356677765442 23348999999
Q ss_pred CceeeeecCCCCceeEEEecHHHHHHHHHHhhhcCc-----EEEeCCCC-------CCCCCCceEEEEeccCCccc----
Q 002663 444 SLVQVSNREIPGRAIICQVHDLMHEIIIRKTEELGF-----GRLLNGED-------SSHCSKTRRITIQRSIDDGA---- 507 (895)
Q Consensus 444 sll~~~~~~~~~~~~~~~mhdli~~~~~~~~~~~~~-----~~~~~~~~-------~~~~~~~~~l~l~~~~~~~~---- 507 (895)
||++.... .+.|||++|+|++.++.++.. .+.+...+ .....+++.+++........
T Consensus 479 sLi~~~~~-------~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~ 551 (1153)
T PLN03210 479 SLIHVRED-------IVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHE 551 (1153)
T ss_pred CCEEEcCC-------eEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecH
Confidence 99987531 389999999999999876531 11221110 11123455555553332211
Q ss_pred ccccCCcceeEEEEEccCC-----CCccchhcccCCC-ceeeEEecCCCCCCcCccccccccCCCeEeecCCCccccccc
Q 002663 508 LESIKDWKVRSVILFNVDK-----LPDSFMKSCIANF-KLMKVLDLEDSPINYLPEGVGNLFNLHLLNARNTKLKIIPKS 581 (895)
Q Consensus 508 ~~~~~~~~lr~l~~~~~~~-----~~~~~~~~~~~~~-~~L~~L~L~~~~~~~l~~~i~~l~~Lr~L~L~~~~l~~lp~~ 581 (895)
.....+.+++.|.++.... ..... +..+..+ ++|+.|.+.++.++.+|..+ ...+|+.|+++++.+..+|..
T Consensus 552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~l-p~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~ 629 (1153)
T PLN03210 552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHL-PEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDG 629 (1153)
T ss_pred HHHhcCccccEEEEecccccccccceeec-CcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccccc
Confidence 1133566777776654321 01111 1223333 45888888888888888777 467888888888888888888
Q ss_pred ccCcCCCcEEEcCcc-cccccchhhhccccCCeEEeecccccccccccccccccccccccCcccceEEeeeecCh-HHHH
Q 002663 582 IGNLLSLEILVLART-FVSELPEEIRNLKKLRSLIVFHYKYITGSIIPTEVAAKIHRGFGSLRGLLVLSTIEADS-QVLK 659 (895)
Q Consensus 582 i~~l~~L~~L~L~~~-~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~p~~i~~l~~L~~L~~~~~~~-~~~~ 659 (895)
+..+++|+.|+|+++ .+..+|. +..+++|+.|++++|. ....+|..++.+++|+.|.+.+|.. ..+.
T Consensus 630 ~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~----------~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp 698 (1153)
T PLN03210 630 VHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCS----------SLVELPSSIQYLNKLEDLDMSRCENLEILP 698 (1153)
T ss_pred cccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCC----------CccccchhhhccCCCCEEeCCCCCCcCccC
Confidence 888888888888877 6777774 7778888888888763 3456777788888888888876621 1111
Q ss_pred HhhccccCcEEEEEecCCCcchHHHHhhccCCCCEEEEEecCcccccccc---c------------------------Cc
Q 002663 660 ELMMLRQLRMLSIRPQNGNGRDLCALIANLENVETLGVLMTSKEEILDLQ---S------------------------LS 712 (895)
Q Consensus 660 ~l~~l~~L~~L~l~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~l~---~------------------------~~ 712 (895)
.-..+++|+.|+++++.... .++ ....+|+.|++.++.....+... . ..
T Consensus 699 ~~i~l~sL~~L~Lsgc~~L~-~~p---~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~ 774 (1153)
T PLN03210 699 TGINLKSLYRLNLSGCSRLK-SFP---DISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMT 774 (1153)
T ss_pred CcCCCCCCCEEeCCCCCCcc-ccc---cccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhh
Confidence 11267788888887743221 122 12357788888777643322100 0 00
Q ss_pred CCCcCccEEEEecc--CCCCCcccccCCCcceEEEEeccCCCcchhhhccCccccceeeccccCCCeEEEecCCCcccce
Q 002663 713 SPPQHLRYLSLRGN--MKKLPDWILKLKNLIGLRLILSGLTEDPISILQALPNLLELMLHGGYDYELFHFEAGWFPKLRK 790 (895)
Q Consensus 713 ~~~~~L~~L~l~~~--~~~lp~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~ 790 (895)
..+++|+.|++++| ...+|.+++++++|+.|+|++|......+..+ ++++|+.|+|++|.....++. ..++|+.
T Consensus 775 ~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~---~~~nL~~ 850 (1153)
T PLN03210 775 MLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPD---ISTNISD 850 (1153)
T ss_pred hccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccc---cccccCE
Confidence 11235566666655 24466666666666666666654323322222 456666666666544433321 2345666
Q ss_pred eeeccCCCceeeEEccCcccccceEEEccCCCCcccCccccccccCcEEEEEcCh
Q 002663 791 LVLLNFEAVKLVIIEKGAMPDIRELWSGPCPLLMEIPIGIEHLRNLELFTFHDMS 845 (895)
Q Consensus 791 L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~ 845 (895)
|+|++| .++.+|..+..+++|+.|++++|+.+..+|..+..+++|+.+++++|+
T Consensus 851 L~Ls~n-~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 851 LNLSRT-GIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred eECCCC-CCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 666654 455566666667777777777777777777666677777777777775
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.97 E-value=1.4e-32 Score=290.81 Aligned_cols=246 Identities=31% Similarity=0.494 Sum_probs=184.2
Q ss_pred chhhHHHHHHHHhcCCCCceEEEEEcCCCchhhHHHHHHhccccccCCCCceEEEEeCCCCCHHHHHHHHHHHHHhccCC
Q 002663 176 IESIKDKLIDLMVNGRSKSSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRTIIKEFHRLSKH 255 (895)
Q Consensus 176 r~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~ 255 (895)
||.++++|.+.|....++.++|+|+||||+||||||++++++..++.+|+.++||.++...+..+++..|+.++......
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 80 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSS 80 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-ST
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccc
Confidence 78999999999998667899999999999999999999999767899999999999999999999999999999876332
Q ss_pred CCCCCCc-cC----------cCc---cc------cHHHHHHhcCCCCCCcEEEEEcCchhhhhhhccCCCcceeeccCCC
Q 002663 256 GRDGPDR-HA----------EGP---LE------GQKDVEHALLDNKKCSRIIVTTRHMNVAKFCKSSSSVRIHELETLP 315 (895)
Q Consensus 256 ~~~~~~~-~~----------~~~---L~------~~~~l~~~l~~~~~gs~iivTTR~~~v~~~~~~~~~~~~~~l~~L~ 315 (895)
.....+. .. ... ++ .|+.+...++....||+||||||++.++..+... ...|++++|+
T Consensus 81 ~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~--~~~~~l~~L~ 158 (287)
T PF00931_consen 81 ISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGT--DKVIELEPLS 158 (287)
T ss_dssp SSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSC--EEEEECSS--
T ss_pred cccccccccccccchhhhccccceeeeeeecccccccccccccccccccccccccccccccccccccc--cccccccccc
Confidence 1000110 00 011 11 5666666677777799999999999998877642 3799999999
Q ss_pred hhhHHHHHHHhhcCCC--CCCCCchhHHHH---------HHHHHHhhhccCCCCHHHHHhhhhc--------CCChHHHH
Q 002663 316 PDEAWKLFCRKAFGPS--SGGCCPSELKEF---------FIVALGGLLSTKNRIVSEWKKLFDS--------DPHLKDCN 376 (895)
Q Consensus 316 ~~es~~Lf~~~a~~~~--~~~~~~~~l~~~---------ai~~~g~~l~~~~~~~~~w~~~~~~--------~~~~~~i~ 376 (895)
++||++||++.++... .+........++ |++.+|++|+.+.. ..+|+.+++. ......++
T Consensus 159 ~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~-~~~w~~~~~~l~~~~~~~~~~~~~~~ 237 (287)
T PF00931_consen 159 EEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKST-VDEWEEALEELENSLRESRDYDRSVF 237 (287)
T ss_dssp HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHS-SSSHHHHHHHHHHCHTCSSGSCHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccc
Confidence 9999999999998765 111222223333 99999999976653 6788887732 11457899
Q ss_pred HHHhcccCCCChhhhhHhcccccCCCCcccchhhHHHHHHHcCccccc
Q 002663 377 RVLSEGYYDLPHHLKSCLLYFGLFPESCKINRGRLIRLWIAEGFVQYR 424 (895)
Q Consensus 377 ~~l~~sy~~L~~~~k~~fl~~a~fp~~~~i~~~~li~~w~a~g~~~~~ 424 (895)
.++.+||+.||++.|.||+|||+||+++.|+++.++++|+++||+...
T Consensus 238 ~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 238 SALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp HHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred ccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence 999999999999999999999999999999999999999999999643
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.93 E-value=1.3e-25 Score=278.49 Aligned_cols=363 Identities=20% Similarity=0.218 Sum_probs=169.8
Q ss_pred CceEEEEeccCCcccccccCCcceeEEEEEccCCCCccchhcccCCCceeeEEecCCCCCC-cCccccccccCCCeEeec
Q 002663 493 KTRRITIQRSIDDGALESIKDWKVRSVILFNVDKLPDSFMKSCIANFKLMKVLDLEDSPIN-YLPEGVGNLFNLHLLNAR 571 (895)
Q Consensus 493 ~~~~l~l~~~~~~~~~~~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~-~l~~~i~~l~~Lr~L~L~ 571 (895)
..+++.+..+......+....+++++|.+.++.. ....+..+.++++|++|+|++|.+. .+|..++++++|++|+++
T Consensus 119 ~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~--~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 196 (968)
T PLN00113 119 SLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNML--SGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLA 196 (968)
T ss_pred CCCEEECcCCccccccCccccCCCCEEECcCCcc--cccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeecc
Confidence 4455554443332221222345555555555432 1122334556666666666666654 556666666666666666
Q ss_pred CCCcc-cccccccCcCCCcEEEcCccccc-ccchhhhccccCCeEEeecccccccccccccccccccccccCcccceEEe
Q 002663 572 NTKLK-IIPKSIGNLLSLEILVLARTFVS-ELPEEIRNLKKLRSLIVFHYKYITGSIIPTEVAAKIHRGFGSLRGLLVLS 649 (895)
Q Consensus 572 ~~~l~-~lp~~i~~l~~L~~L~L~~~~l~-~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~p~~i~~l~~L~~L~ 649 (895)
+|.+. .+|..++++++|++|+|++|.+. .+|..++++++|++|++++|.. ...+|..++.+++|+.|.
T Consensus 197 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l----------~~~~p~~l~~l~~L~~L~ 266 (968)
T PLN00113 197 SNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNL----------TGPIPSSLGNLKNLQYLF 266 (968)
T ss_pred CCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCcee----------ccccChhHhCCCCCCEEE
Confidence 66654 45666666666666666666444 4566666666666666665432 123344455555555555
Q ss_pred eeec--ChHHHHHhhccccCcEEEEEecCCCcchHHHHhhccCCCCEEEEEecCcccccccccCcCCCcCccEEEEeccC
Q 002663 650 TIEA--DSQVLKELMMLRQLRMLSIRPQNGNGRDLCALIANLENVETLGVLMTSKEEILDLQSLSSPPQHLRYLSLRGNM 727 (895)
Q Consensus 650 ~~~~--~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~ 727 (895)
+..+ ....+..+..+++|+.|+++++.... .++..+.++++|+.|++.+|..... ++......++|+.|++++|.
T Consensus 267 L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-~~p~~~~~l~~L~~L~l~~n~~~~~--~~~~~~~l~~L~~L~L~~n~ 343 (968)
T PLN00113 267 LYQNKLSGPIPPSIFSLQKLISLDLSDNSLSG-EIPELVIQLQNLEILHLFSNNFTGK--IPVALTSLPRLQVLQLWSNK 343 (968)
T ss_pred CcCCeeeccCchhHhhccCcCEEECcCCeecc-CCChhHcCCCCCcEEECCCCccCCc--CChhHhcCCCCCEEECcCCC
Confidence 4443 12233344445555555554433222 2333444444555555544433211 11111122244444444432
Q ss_pred --CCCCcccccCCCcceEEEEeccCC------------------------CcchhhhccCccccceeeccccCCCeEEEe
Q 002663 728 --KKLPDWILKLKNLIGLRLILSGLT------------------------EDPISILQALPNLLELMLHGGYDYELFHFE 781 (895)
Q Consensus 728 --~~lp~~~~~l~~L~~L~L~~~~l~------------------------~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~ 781 (895)
..+|.+++.+++|+.|++++|.+. +..+..++.+++|+.|+|++|.+...++..
T Consensus 344 l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~ 423 (968)
T PLN00113 344 FSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSE 423 (968)
T ss_pred CcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChh
Confidence 234444444444444444444433 333333444444444444444433333333
Q ss_pred cCCCcccceeeeccCCCceeeEEccCcccccceEEEccCCCCcccCccccccccCcEEEEEcChhhhhcccccceeEEec
Q 002663 782 AGWFPKLRKLVLLNFEAVKLVIIEKGAMPDIRELWSGPCPLLMEIPIGIEHLRNLELFTFHDMSKQVCCMTKNEKWEVTE 861 (895)
Q Consensus 782 ~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~~~~~i~~~~~~~i~~ 861 (895)
...+++|+.|++++|.....++.....+++|+.|++++|.....+|..+ ..++|+.|++++|. +.. ..+..+.
T Consensus 424 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~-----l~~-~~~~~~~ 496 (968)
T PLN00113 424 FTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQ-----FSG-AVPRKLG 496 (968)
T ss_pred HhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCc-----cCC-ccChhhh
Confidence 3344444444444443333333333344455555555544444444322 23455555555542 111 1112225
Q ss_pred cCCcEEEEEEeCCeec
Q 002663 862 HIPDVRVTYIDAGQLF 877 (895)
Q Consensus 862 ~~p~l~~l~l~~~~i~ 877 (895)
.+++|+.+.+++|.+.
T Consensus 497 ~l~~L~~L~Ls~N~l~ 512 (968)
T PLN00113 497 SLSELMQLKLSENKLS 512 (968)
T ss_pred hhhccCEEECcCCcce
Confidence 6677888888777664
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.93 E-value=2e-25 Score=276.72 Aligned_cols=353 Identities=19% Similarity=0.209 Sum_probs=170.8
Q ss_pred CCcceeEEEEEccCCCCccchhcccCCCceeeEEecCCCCCC-cCccccccccCCCeEeecCCCcc-cccccccCcCCCc
Q 002663 512 KDWKVRSVILFNVDKLPDSFMKSCIANFKLMKVLDLEDSPIN-YLPEGVGNLFNLHLLNARNTKLK-IIPKSIGNLLSLE 589 (895)
Q Consensus 512 ~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~-~l~~~i~~l~~Lr~L~L~~~~l~-~lp~~i~~l~~L~ 589 (895)
..++++.|.+.++.. ...++...+..+++|++|+|++|.+. .+|. +.+++|++|+|++|.+. .+|..++++++|+
T Consensus 91 ~l~~L~~L~Ls~n~~-~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~ 167 (968)
T PLN00113 91 RLPYIQTINLSNNQL-SGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLK 167 (968)
T ss_pred CCCCCCEEECCCCcc-CCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCC
Confidence 445555555554432 11223333445555555555555544 2222 33455555555555544 4444555555555
Q ss_pred EEEcCccccc-ccchhhhccccCCeEEeeccccccccccc---------------ccccccccccccCcccceEEeeeec
Q 002663 590 ILVLARTFVS-ELPEEIRNLKKLRSLIVFHYKYITGSIIP---------------TEVAAKIHRGFGSLRGLLVLSTIEA 653 (895)
Q Consensus 590 ~L~L~~~~l~-~lp~~i~~l~~L~~L~l~~~~~~~~~~~~---------------~~~~~~~p~~i~~l~~L~~L~~~~~ 653 (895)
+|+|++|.+. .+|..++++++|++|++++|.... ..+. ......+|..++.+++|+.|++..+
T Consensus 168 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n 246 (968)
T PLN00113 168 VLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVG-QIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYN 246 (968)
T ss_pred EEECccCcccccCChhhhhCcCCCeeeccCCCCcC-cCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCc
Confidence 5555555332 444455555555555555432100 0000 0111233444455555555554443
Q ss_pred --ChHHHHHhhccccCcEEEEEecCCCcchHHHHhhccCCCCEEEEEecCcccccccccCcCCCcCccEEEEeccC--CC
Q 002663 654 --DSQVLKELMMLRQLRMLSIRPQNGNGRDLCALIANLENVETLGVLMTSKEEILDLQSLSSPPQHLRYLSLRGNM--KK 729 (895)
Q Consensus 654 --~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~--~~ 729 (895)
....+..++.+++|+.|+++++.... .++..+.++++|+.|++++|..... ++......++|+.|++++|. ..
T Consensus 247 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~--~p~~~~~l~~L~~L~l~~n~~~~~ 323 (968)
T PLN00113 247 NLTGPIPSSLGNLKNLQYLFLYQNKLSG-PIPPSIFSLQKLISLDLSDNSLSGE--IPELVIQLQNLEILHLFSNNFTGK 323 (968)
T ss_pred eeccccChhHhCCCCCCEEECcCCeeec-cCchhHhhccCcCEEECcCCeeccC--CChhHcCCCCCcEEECCCCccCCc
Confidence 12233444555555555554433322 2334444555555555554433211 12222223355555555542 34
Q ss_pred CCcccccCCCcceEEEEeccCCCcchhhhccCccccceeeccccCCCeEEEecCCCcccceeeeccCCCceeeEEccCcc
Q 002663 730 LPDWILKLKNLIGLRLILSGLTEDPISILQALPNLLELMLHGGYDYELFHFEAGWFPKLRKLVLLNFEAVKLVIIEKGAM 809 (895)
Q Consensus 730 lp~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~ 809 (895)
.|.++..+++|+.|+|++|.+.+..+..++.+++|+.|+|++|.+...++.....+++|+.|++.+|.....+|.....+
T Consensus 324 ~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~ 403 (968)
T PLN00113 324 IPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGAC 403 (968)
T ss_pred CChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCC
Confidence 45555555555555555555554455555555555555555555444444334445555566665554444444445556
Q ss_pred cccceEEEccCCCCcccCccccccccCcEEEEEcChhhhhcccccceeEEeccCCcEEEEEEeCCeec
Q 002663 810 PDIRELWSGPCPLLMEIPIGIEHLRNLELFTFHDMSKQVCCMTKNEKWEVTEHIPDVRVTYIDAGQLF 877 (895)
Q Consensus 810 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~~~~~i~~~~~~~i~~~~p~l~~l~l~~~~i~ 877 (895)
++|+.|++++|.....+|..+..+++|+.|++++|. +....-... ..+|+|+.+.+.+|.+.
T Consensus 404 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~-----l~~~~~~~~-~~l~~L~~L~L~~n~~~ 465 (968)
T PLN00113 404 RSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNN-----LQGRINSRK-WDMPSLQMLSLARNKFF 465 (968)
T ss_pred CCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCc-----ccCccChhh-ccCCCCcEEECcCceee
Confidence 666666666666555566666666666666666663 111000012 35677888877776664
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.88 E-value=6.8e-25 Score=229.44 Aligned_cols=315 Identities=23% Similarity=0.185 Sum_probs=196.7
Q ss_pred CCceEEEEeccC-CcccccccCCcceeEEEEEccCCCCccchhcccCCCceeeEEecCCCCCCcCccccccccCCCeEee
Q 002663 492 SKTRRITIQRSI-DDGALESIKDWKVRSVILFNVDKLPDSFMKSCIANFKLMKVLDLEDSPINYLPEGVGNLFNLHLLNA 570 (895)
Q Consensus 492 ~~~~~l~l~~~~-~~~~~~~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~i~~l~~Lr~L~L 570 (895)
.+..|+++..+. .....+....+.+|++++..+.--...++.. +..++.|.+|||+.|++++.|..+.+-+++-.|+|
T Consensus 55 qkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~d-iF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNL 133 (1255)
T KOG0444|consen 55 QKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTD-IFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNL 133 (1255)
T ss_pred hhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCch-hcccccceeeecchhhhhhcchhhhhhcCcEEEEc
Confidence 345566554332 2333355567778888776665433444433 44678888888888888888888888888888888
Q ss_pred cCCCcccccccc-cCcCCCcEEEcCcccccccchhhhccccCCeEEeecccccccccccccccccccccccCcccceEEe
Q 002663 571 RNTKLKIIPKSI-GNLLSLEILVLARTFVSELPEEIRNLKKLRSLIVFHYKYITGSIIPTEVAAKIHRGFGSLRGLLVLS 649 (895)
Q Consensus 571 ~~~~l~~lp~~i-~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~p~~i~~l~~L~~L~ 649 (895)
|+|+|..||.++ -+|..|-+||||+|.+..+|+.+..|.+|++|.+++|+..- ..+ ..+..+++|+.|.
T Consensus 134 S~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~h------fQL----rQLPsmtsL~vLh 203 (1255)
T KOG0444|consen 134 SYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNH------FQL----RQLPSMTSLSVLH 203 (1255)
T ss_pred ccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhH------HHH----hcCccchhhhhhh
Confidence 888888888664 47778888888888888888888888888888888764321 011 1233455556665
Q ss_pred eeecC---hHHHHHhhccccCcEEEEEecCCCcchHHHHhhccCCCCEEEEEecCcccccccccCcCCCcCccEEEEecc
Q 002663 650 TIEAD---SQVLKELMMLRQLRMLSIRPQNGNGRDLCALIANLENVETLGVLMTSKEEILDLQSLSSPPQHLRYLSLRGN 726 (895)
Q Consensus 650 ~~~~~---~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~ 726 (895)
+.+.. ...+.++..+.||+.++++.|+... +|..+.++++|..|++++|.+.+.. .......+|++|+++.|
T Consensus 204 ms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~--vPecly~l~~LrrLNLS~N~iteL~---~~~~~W~~lEtLNlSrN 278 (1255)
T KOG0444|consen 204 MSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPI--VPECLYKLRNLRRLNLSGNKITELN---MTEGEWENLETLNLSRN 278 (1255)
T ss_pred cccccchhhcCCCchhhhhhhhhccccccCCCc--chHHHhhhhhhheeccCcCceeeee---ccHHHHhhhhhhccccc
Confidence 55442 2344556666677777777665443 5666667777777777776554332 11112226666666666
Q ss_pred -CCCCCcccccCCCcceEEEEeccCCCc-chhhhccCccccceeeccccCCCeEEEecCCCcccceeeeccCCCceeeEE
Q 002663 727 -MKKLPDWILKLKNLIGLRLILSGLTED-PISILQALPNLLELMLHGGYDYELFHFEAGWFPKLRKLVLLNFEAVKLVII 804 (895)
Q Consensus 727 -~~~lp~~~~~l~~L~~L~L~~~~l~~~-~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~ 804 (895)
...+|..++.++.|+.|.+.+|+++-+ .++.+|+|.+|+.+...+|.+ +..|.....+++|+.|.|.+| .+-.+|.
T Consensus 279 QLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~L-ElVPEglcRC~kL~kL~L~~N-rLiTLPe 356 (1255)
T KOG0444|consen 279 QLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKL-ELVPEGLCRCVKLQKLKLDHN-RLITLPE 356 (1255)
T ss_pred hhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhcccc-ccCchhhhhhHHHHHhccccc-ceeechh
Confidence 356666666666666666666665432 344556666666666655443 344555555666666666554 3444555
Q ss_pred ccCcccccceEEEccCCCCc
Q 002663 805 EKGAMPDIRELWSGPCPLLM 824 (895)
Q Consensus 805 ~~~~~~~L~~L~l~~c~~l~ 824 (895)
.+.-+|-|+.|+++.|+.+.
T Consensus 357 aIHlL~~l~vLDlreNpnLV 376 (1255)
T KOG0444|consen 357 AIHLLPDLKVLDLRENPNLV 376 (1255)
T ss_pred hhhhcCCcceeeccCCcCcc
Confidence 55556666666666666554
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.88 E-value=7.3e-25 Score=229.22 Aligned_cols=337 Identities=16% Similarity=0.163 Sum_probs=274.6
Q ss_pred CceEEEEeccCCc-ccccccCCcceeEEEEEccCCCCccchhcccCCCceeeEEecCCCCCC--cCccccccccCCCeEe
Q 002663 493 KTRRITIQRSIDD-GALESIKDWKVRSVILFNVDKLPDSFMKSCIANFKLMKVLDLEDSPIN--YLPEGVGNLFNLHLLN 569 (895)
Q Consensus 493 ~~~~l~l~~~~~~-~~~~~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~--~l~~~i~~l~~Lr~L~ 569 (895)
..+.+.+...... .+.+...+.++..|.+..+.-. ....-++.++.||.+++..|+++ .+|..|-+|..|..|+
T Consensus 33 ~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~---~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lD 109 (1255)
T KOG0444|consen 33 QMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLI---SVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILD 109 (1255)
T ss_pred heeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhH---hhhhhhccchhhHHHhhhccccccCCCCchhcccccceeee
Confidence 3445555544433 3334455667777766555431 23355778999999999999987 7899999999999999
Q ss_pred ecCCCcccccccccCcCCCcEEEcCcccccccchhhh-ccccCCeEEeecccccccccccccccccccccccCcccceEE
Q 002663 570 ARNTKLKIIPKSIGNLLSLEILVLARTFVSELPEEIR-NLKKLRSLIVFHYKYITGSIIPTEVAAKIHRGFGSLRGLLVL 648 (895)
Q Consensus 570 L~~~~l~~lp~~i~~l~~L~~L~L~~~~l~~lp~~i~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~p~~i~~l~~L~~L 648 (895)
||+|++++.|..+...+++-.|+||+|++..+|..+. +|..|-.|++++| .+..+|+.+..|..||+|
T Consensus 110 LShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N-----------rLe~LPPQ~RRL~~LqtL 178 (1255)
T KOG0444|consen 110 LSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN-----------RLEMLPPQIRRLSMLQTL 178 (1255)
T ss_pred cchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccc-----------hhhhcCHHHHHHhhhhhh
Confidence 9999999999999999999999999999999998654 8999999999984 467889999999999999
Q ss_pred eeeecC--hHHHHHhhccccCcEEEEEecCCCcchHHHHhhccCCCCEEEEEecCcccccccccCcCCCcCccEEEEecc
Q 002663 649 STIEAD--SQVLKELMMLRQLRMLSIRPQNGNGRDLCALIANLENVETLGVLMTSKEEILDLQSLSSPPQHLRYLSLRGN 726 (895)
Q Consensus 649 ~~~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~ 726 (895)
.+.++. ...+..+..+++|+.|.+++..-+...+|.++..+.||..++++.|+.... +...-..++|+.|+|++|
T Consensus 179 ~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~v---Pecly~l~~LrrLNLS~N 255 (1255)
T KOG0444|consen 179 KLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIV---PECLYKLRNLRRLNLSGN 255 (1255)
T ss_pred hcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcc---hHHHhhhhhhheeccCcC
Confidence 998874 445667888899999999985555556788899999999999998865443 333334458999999998
Q ss_pred -CCCCCcccccCCCcceEEEEeccCCCcchhhhccCccccceeeccccCC-CeEEEecCCCcccceeeeccCCCceeeEE
Q 002663 727 -MKKLPDWILKLKNLIGLRLILSGLTEDPISILQALPNLLELMLHGGYDY-ELFHFEAGWFPKLRKLVLLNFEAVKLVII 804 (895)
Q Consensus 727 -~~~lp~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~l~~l~~ 804 (895)
...+.-..+...+|++|+|+.|+++ ..+.++.+|++|+.|.+.+|.+. +.+|..++.+-.|+.+...+| .++-+|.
T Consensus 256 ~iteL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN-~LElVPE 333 (1255)
T KOG0444|consen 256 KITELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANN-KLELVPE 333 (1255)
T ss_pred ceeeeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhcc-ccccCch
Confidence 4666666677899999999999986 56678899999999999888664 567888888899999999876 6888999
Q ss_pred ccCcccccceEEEccCCCCcccCccccccccCcEEEEEcChhhhh
Q 002663 805 EKGAMPDIRELWSGPCPLLMEIPIGIEHLRNLELFTFHDMSKQVC 849 (895)
Q Consensus 805 ~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~~~~ 849 (895)
+++.|++|+.|.++.|... .+|.++.-++.|+.|++..||....
T Consensus 334 glcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVM 377 (1255)
T KOG0444|consen 334 GLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVM 377 (1255)
T ss_pred hhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCccC
Confidence 9999999999999988754 6899999999999999999995444
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.86 E-value=5.4e-23 Score=214.24 Aligned_cols=345 Identities=19% Similarity=0.177 Sum_probs=216.6
Q ss_pred CcceeEEEEEccCCCCccchhcccCCCceeeEEecCCCCCCcCccccccccCCCeEeecCCCccccc-ccccCcCCCcEE
Q 002663 513 DWKVRSVILFNVDKLPDSFMKSCIANFKLMKVLDLEDSPINYLPEGVGNLFNLHLLNARNTKLKIIP-KSIGNLLSLEIL 591 (895)
Q Consensus 513 ~~~lr~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~i~~l~~Lr~L~L~~~~l~~lp-~~i~~l~~L~~L 591 (895)
.+..++|.+..+... .+-..+|.++++|+.+.+..|.++.+|...+..-||+.|+|.+|.|.++. +.+.-++-|++|
T Consensus 77 p~~t~~LdlsnNkl~--~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrsl 154 (873)
T KOG4194|consen 77 PSQTQTLDLSNNKLS--HIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSL 154 (873)
T ss_pred ccceeeeeccccccc--cCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhh
Confidence 455667777666542 23346678899999999999999999988888888999999998888664 456778888999
Q ss_pred EcCcccccccch-hhhccccCCeEEeecccccccccccccccccccccccCcccceEEeeeec--ChHHHHHhhccccCc
Q 002663 592 VLARTFVSELPE-EIRNLKKLRSLIVFHYKYITGSIIPTEVAAKIHRGFGSLRGLLVLSTIEA--DSQVLKELMMLRQLR 668 (895)
Q Consensus 592 ~L~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~p~~i~~l~~L~~L~~~~~--~~~~~~~l~~l~~L~ 668 (895)
|||.|.+.++|. .+..-.++++|+|++|...+- --..|..+.+|.+|.+.++ +.-....+.++++|+
T Consensus 155 DLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l----------~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~ 224 (873)
T KOG4194|consen 155 DLSRNLISEIPKPSFPAKVNIKKLNLASNRITTL----------ETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLE 224 (873)
T ss_pred hhhhchhhcccCCCCCCCCCceEEeecccccccc----------ccccccccchheeeecccCcccccCHHHhhhcchhh
Confidence 999888888876 344557888888887643221 0112344444444444444 222333444455555
Q ss_pred EEEEEecCCCcch-----------------------HHHHhhccCCCCEEEEEecCcccccccccCcCCCcCccEEEEec
Q 002663 669 MLSIRPQNGNGRD-----------------------LCALIANLENVETLGVLMTSKEEILDLQSLSSPPQHLRYLSLRG 725 (895)
Q Consensus 669 ~L~l~~~~~~~~~-----------------------l~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~ 725 (895)
.|++..|.+.... --..+..+.++++|++..|...... ..+.-....|+.|+++.
T Consensus 225 ~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn--~g~lfgLt~L~~L~lS~ 302 (873)
T KOG4194|consen 225 SLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVN--EGWLFGLTSLEQLDLSY 302 (873)
T ss_pred hhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhh--cccccccchhhhhccch
Confidence 5544443221110 0122334455555555555433321 11112223666666666
Q ss_pred cC-CC-CCcccccCCCcceEEEEeccCCCcchhhhccCccccceeeccccCCCeEEEecCCCcccceeeeccCCCceeeE
Q 002663 726 NM-KK-LPDWILKLKNLIGLRLILSGLTEDPISILQALPNLLELMLHGGYDYELFHFEAGWFPKLRKLVLLNFEAVKLVI 803 (895)
Q Consensus 726 ~~-~~-lp~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~ 803 (895)
|. .. -++....+++|..|+|++|+++..+...|..|..|++|+|++|.+...-...+.++++|+.|+|.+|. +....
T Consensus 303 NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~-ls~~I 381 (873)
T KOG4194|consen 303 NAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNE-LSWCI 381 (873)
T ss_pred hhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCe-EEEEE
Confidence 62 21 23334456777777777777777666677777777777777776655444555678889999998874 33322
Q ss_pred ----EccCcccccceEEEccCCCCcccC-ccccccccCcEEEEEcChhhhhcccccceeEEeccCCcEEEEEEeC-Ceec
Q 002663 804 ----IEKGAMPDIRELWSGPCPLLMEIP-IGIEHLRNLELFTFHDMSKQVCCMTKNEKWEVTEHIPDVRVTYIDA-GQLF 877 (895)
Q Consensus 804 ----~~~~~~~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~c~~~~~~i~~~~~~~i~~~~p~l~~l~l~~-~~i~ 877 (895)
..+.++|+|+.|.+.+|. ++.+| ..|..++.|++|++.+|+ +.+|.. ..+.+. +|+.+.+.. +.++
T Consensus 382 EDaa~~f~gl~~LrkL~l~gNq-lk~I~krAfsgl~~LE~LdL~~Na--iaSIq~----nAFe~m-~Lk~Lv~nSssflC 453 (873)
T KOG4194|consen 382 EDAAVAFNGLPSLRKLRLTGNQ-LKSIPKRAFSGLEALEHLDLGDNA--IASIQP----NAFEPM-ELKELVMNSSSFLC 453 (873)
T ss_pred ecchhhhccchhhhheeecCce-eeecchhhhccCcccceecCCCCc--ceeecc----cccccc-hhhhhhhcccceEE
Confidence 224469999999999987 66776 468899999999999997 223332 222444 677777754 6778
Q ss_pred ccc
Q 002663 878 YCP 880 (895)
Q Consensus 878 ~cp 880 (895)
+|.
T Consensus 454 DCq 456 (873)
T KOG4194|consen 454 DCQ 456 (873)
T ss_pred ecc
Confidence 885
No 9
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.84 E-value=4.6e-20 Score=228.47 Aligned_cols=264 Identities=20% Similarity=0.188 Sum_probs=137.7
Q ss_pred CceeeEEecCCCCCCcCccccccccCCCeEeecCC-CcccccccccCcCCCcEEEcCcc-cccccchhhhccccCCeEEe
Q 002663 539 FKLMKVLDLEDSPINYLPEGVGNLFNLHLLNARNT-KLKIIPKSIGNLLSLEILVLART-FVSELPEEIRNLKKLRSLIV 616 (895)
Q Consensus 539 ~~~L~~L~L~~~~~~~l~~~i~~l~~Lr~L~L~~~-~l~~lp~~i~~l~~L~~L~L~~~-~l~~lp~~i~~l~~L~~L~l 616 (895)
+.+|+.|++.++.+..+|..+..+++|++|+|+++ .+..+|. ++.+++|++|+|++| .+..+|..++++++|++|++
T Consensus 610 ~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L 688 (1153)
T PLN03210 610 PENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDM 688 (1153)
T ss_pred ccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeC
Confidence 45666666666666666666666666666666653 3455553 556666666666665 55666666666666666666
Q ss_pred ecccccccccccccccccccccccCcccceEEeeeecChHHHHHh-hccccCcEEEEEecCCCcchHHHHh---------
Q 002663 617 FHYKYITGSIIPTEVAAKIHRGFGSLRGLLVLSTIEADSQVLKEL-MMLRQLRMLSIRPQNGNGRDLCALI--------- 686 (895)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~l~~~l--------- 686 (895)
++|+. ...+|..+ ++++|+.|.+.++... ..+ ....+|+.|++.++.... ++..+
T Consensus 689 ~~c~~----------L~~Lp~~i-~l~sL~~L~Lsgc~~L--~~~p~~~~nL~~L~L~~n~i~~--lP~~~~l~~L~~L~ 753 (1153)
T PLN03210 689 SRCEN----------LEILPTGI-NLKSLYRLNLSGCSRL--KSFPDISTNISWLDLDETAIEE--FPSNLRLENLDELI 753 (1153)
T ss_pred CCCCC----------cCccCCcC-CCCCCCEEeCCCCCCc--cccccccCCcCeeecCCCcccc--cccccccccccccc
Confidence 66532 23344433 4566666665554210 011 112455566665533211 11111
Q ss_pred ---------------------hccCCCCEEEEEecCcccccccccCcCCCcCccEEEEecc--CCCCCcccccCCCcceE
Q 002663 687 ---------------------ANLENVETLGVLMTSKEEILDLQSLSSPPQHLRYLSLRGN--MKKLPDWILKLKNLIGL 743 (895)
Q Consensus 687 ---------------------~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~--~~~lp~~~~~l~~L~~L 743 (895)
...++|+.|++++|.... .++.....+++|+.|+|++| ...+|..+ .+++|+.|
T Consensus 754 l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~--~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L 830 (1153)
T PLN03210 754 LCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLV--ELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESL 830 (1153)
T ss_pred ccccchhhccccccccchhhhhccccchheeCCCCCCcc--ccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEE
Confidence 011234444444432211 12322333446666666654 24455544 45666666
Q ss_pred EEEeccCCCcchhhhccCccccceeeccccCCCeEEEecCCCcccceeeeccCCCceeeEEccCcccccceEEEccCCCC
Q 002663 744 RLILSGLTEDPISILQALPNLLELMLHGGYDYELFHFEAGWFPKLRKLVLLNFEAVKLVIIEKGAMPDIRELWSGPCPLL 823 (895)
Q Consensus 744 ~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l 823 (895)
+|++|......+. ..++|+.|+|++|.+. .++.....+++|+.|++.+|..+..++.....+++|+.|++++|..+
T Consensus 831 ~Ls~c~~L~~~p~---~~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L 906 (1153)
T PLN03210 831 DLSGCSRLRTFPD---ISTNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGAL 906 (1153)
T ss_pred ECCCCCccccccc---cccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCccc
Confidence 6666643222211 1345666666665543 34444555666666666666666666655556666666666666655
Q ss_pred cc
Q 002663 824 ME 825 (895)
Q Consensus 824 ~~ 825 (895)
..
T Consensus 907 ~~ 908 (1153)
T PLN03210 907 TE 908 (1153)
T ss_pred cc
Confidence 43
No 10
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.82 E-value=2.8e-21 Score=201.54 Aligned_cols=289 Identities=19% Similarity=0.126 Sum_probs=179.5
Q ss_pred eeeEEecCCCCCCcC-ccccccccCCCeEeecCCCcccccccccCcCCCcEEEcCcccccccch-hhhccccCCeEEeec
Q 002663 541 LMKVLDLEDSPINYL-PEGVGNLFNLHLLNARNTKLKIIPKSIGNLLSLEILVLARTFVSELPE-EIRNLKKLRSLIVFH 618 (895)
Q Consensus 541 ~L~~L~L~~~~~~~l-~~~i~~l~~Lr~L~L~~~~l~~lp~~i~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~ 618 (895)
.-+.||+++|.+... +..|.++++|+.+++.+|.++.+|...+..-+|+.|+|.+|.+..+.. .+.-++.|+.|||+.
T Consensus 79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSr 158 (873)
T KOG4194|consen 79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSR 158 (873)
T ss_pred ceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhh
Confidence 356799999999855 677899999999999999999999877777789999999998888854 688899999999998
Q ss_pred ccccccccccccccccccc-cccCcccceEEeeeecChH--HHHHhhccccCcEEEEEecCCCcchHHHHhhccCCCCEE
Q 002663 619 YKYITGSIIPTEVAAKIHR-GFGSLRGLLVLSTIEADSQ--VLKELMMLRQLRMLSIRPQNGNGRDLCALIANLENVETL 695 (895)
Q Consensus 619 ~~~~~~~~~~~~~~~~~p~-~i~~l~~L~~L~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~l~~L~~L 695 (895)
|. +..+|. .+..-.+++.|.+..+... ....+..+.+|..|.++.|.++. .....+.++++|++|
T Consensus 159 N~-----------is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNritt-Lp~r~Fk~L~~L~~L 226 (873)
T KOG4194|consen 159 NL-----------ISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITT-LPQRSFKRLPKLESL 226 (873)
T ss_pred ch-----------hhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccc-cCHHHhhhcchhhhh
Confidence 64 333332 3455578888888776433 34567888899999999987665 234677889999999
Q ss_pred EEEecCcccccccccCcCCCcCccEEEEeccC-CCCCc-ccccCCCcceEEEEeccCCCcchhhhccCccccceeecccc
Q 002663 696 GVLMTSKEEILDLQSLSSPPQHLRYLSLRGNM-KKLPD-WILKLKNLIGLRLILSGLTEDPISILQALPNLLELMLHGGY 773 (895)
Q Consensus 696 ~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~lp~-~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~ 773 (895)
++..|.+..... ..+.+. ++|+.|.+..|. ..+.+ .|-.+.+++.|+|+.|++....-.++-+|++|++|+|++|.
T Consensus 227 dLnrN~irive~-ltFqgL-~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~Na 304 (873)
T KOG4194|consen 227 DLNRNRIRIVEG-LTFQGL-PSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNA 304 (873)
T ss_pred hccccceeeehh-hhhcCc-hhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhh
Confidence 998886533211 111111 145555555442 22222 23334555555555555544444445555555555555555
Q ss_pred CCCeEEEecCCCcccceeeeccCCCceeeEE-ccCcccccceEEEccCCCCcccCccccccccCcEEEEEcC
Q 002663 774 DYELFHFEAGWFPKLRKLVLLNFEAVKLVII-EKGAMPDIRELWSGPCPLLMEIPIGIEHLRNLELFTFHDM 844 (895)
Q Consensus 774 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c 844 (895)
+...-....+..++|+.|+|++|. ++.++. .+..+..|+.|.++.|....--...+..+.+|++|+++.|
T Consensus 305 I~rih~d~WsftqkL~~LdLs~N~-i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N 375 (873)
T KOG4194|consen 305 IQRIHIDSWSFTQKLKELDLSSNR-ITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSN 375 (873)
T ss_pred hheeecchhhhcccceeEeccccc-cccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCC
Confidence 443333334444555555555542 333322 2233444555555554422111122344445555555444
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.77 E-value=1.8e-21 Score=194.32 Aligned_cols=171 Identities=25% Similarity=0.282 Sum_probs=85.7
Q ss_pred CCceeeEEecCCCCCCcCccccccccCCCeEeecCCCcccccccccCcCCCcEEEcCcccccccchhhhccccCCeEEee
Q 002663 538 NFKLMKVLDLEDSPINYLPEGVGNLFNLHLLNARNTKLKIIPKSIGNLLSLEILVLARTFVSELPEEIRNLKKLRSLIVF 617 (895)
Q Consensus 538 ~~~~L~~L~L~~~~~~~l~~~i~~l~~Lr~L~L~~~~l~~lp~~i~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~ 617 (895)
.+..|..|+..+|++..+|.+++.+.+|..|++.+|.++.+|+..-+++.|++||...|-++.+|+.++.+.+|..|++.
T Consensus 135 ~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~ 214 (565)
T KOG0472|consen 135 RLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLR 214 (565)
T ss_pred HHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhh
Confidence 33344444444444444444444444444444444444444443333444444444444444444444444444444444
Q ss_pred cccccccccccccccccccccccCcccceEEeeeecChHH--HHHhhccccCcEEEEEecCCCcchHHHHhhccCCCCEE
Q 002663 618 HYKYITGSIIPTEVAAKIHRGFGSLRGLLVLSTIEADSQV--LKELMMLRQLRMLSIRPQNGNGRDLCALIANLENVETL 695 (895)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~--~~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~l~~L~~L 695 (895)
.| .+..+| .|+.+..|.+|+...+.... .+.+.++++|..|++..|.... +|..+.-+++|+.|
T Consensus 215 ~N-----------ki~~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke--~Pde~clLrsL~rL 280 (565)
T KOG0472|consen 215 RN-----------KIRFLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKE--VPDEICLLRSLERL 280 (565)
T ss_pred hc-----------ccccCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeecccccccc--CchHHHHhhhhhhh
Confidence 32 233334 45555555555544432221 2234467777777777765543 55666677778888
Q ss_pred EEEecCcccccccccCcCCCcCccEEEEecc
Q 002663 696 GVLMTSKEEILDLQSLSSPPQHLRYLSLRGN 726 (895)
Q Consensus 696 ~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~ 726 (895)
++++|.++. ++...+.. +|+.|-+.||
T Consensus 281 DlSNN~is~---Lp~sLgnl-hL~~L~leGN 307 (565)
T KOG0472|consen 281 DLSNNDISS---LPYSLGNL-HLKFLALEGN 307 (565)
T ss_pred cccCCcccc---CCcccccc-eeeehhhcCC
Confidence 887776543 33333444 6666666654
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.73 E-value=2.8e-20 Score=204.86 Aligned_cols=344 Identities=20% Similarity=0.199 Sum_probs=198.4
Q ss_pred ceeEEEEEccCCCCccchhcccCCCceeeEEecCCCCCCcCccccccccCCCeEeecCCCcccccccccCcCCCcEEEcC
Q 002663 515 KVRSVILFNVDKLPDSFMKSCIANFKLMKVLDLEDSPINYLPEGVGNLFNLHLLNARNTKLKIIPKSIGNLLSLEILVLA 594 (895)
Q Consensus 515 ~lr~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~i~~l~~Lr~L~L~~~~l~~lp~~i~~l~~L~~L~L~ 594 (895)
++++|.+.++... .++..+..+..|+.|+++.|.|..+|.+++++.+|+||+|.+|.+..+|.++..+++|++|+++
T Consensus 46 ~L~~l~lsnn~~~---~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS 122 (1081)
T KOG0618|consen 46 KLKSLDLSNNQIS---SFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLS 122 (1081)
T ss_pred eeEEeeccccccc---cCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccchhhcCchhHHhhhcccccccc
Confidence 3555555544432 1223344555666666666666666666666666666666666666666666666666666666
Q ss_pred cccccccchhhhccccCCeEEeecccccc--cc--cc-----cccccccccccc-------------------cCcccc-
Q 002663 595 RTFVSELPEEIRNLKKLRSLIVFHYKYIT--GS--II-----PTEVAAKIHRGF-------------------GSLRGL- 645 (895)
Q Consensus 595 ~~~l~~lp~~i~~l~~L~~L~l~~~~~~~--~~--~~-----~~~~~~~~p~~i-------------------~~l~~L- 645 (895)
.|.+..+|..+..+..+..+.+++|..+. +. +. .......++.++ ..+.+|
T Consensus 123 ~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~~~dls~~~~l~ 202 (1081)
T KOG0618|consen 123 FNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNEMEVLDLSNLANLE 202 (1081)
T ss_pred hhccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhheeeecccchhhhhhhhhccchh
Confidence 66666555544444333333333330000 00 00 000000011111 111111
Q ss_pred -----------------------------------------eEEeeeec-ChHHHHHhhccccCcEEEEEecCCCcchHH
Q 002663 646 -----------------------------------------LVLSTIEA-DSQVLKELMMLRQLRMLSIRPQNGNGRDLC 683 (895)
Q Consensus 646 -----------------------------------------~~L~~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~ 683 (895)
+.+++... -...++.++.+.+|+.+.+..|.+. .++
T Consensus 203 ~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~--~lp 280 (1081)
T KOG0618|consen 203 VLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLV--ALP 280 (1081)
T ss_pred hhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhhcchHHHHhcccceEecccchhHH--hhH
Confidence 11111111 1223466778888998888776552 355
Q ss_pred HHhhccCCCCEEEEEecCcccccccccCcCCCcCccEEEEecc-CCCCCccc------------------------c--c
Q 002663 684 ALIANLENVETLGVLMTSKEEILDLQSLSSPPQHLRYLSLRGN-MKKLPDWI------------------------L--K 736 (895)
Q Consensus 684 ~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~lp~~~------------------------~--~ 736 (895)
..+....+|+.|.+..|.... ++......++|++|+|..| +..+|..+ + .
T Consensus 281 ~ri~~~~~L~~l~~~~nel~y---ip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~ 357 (1081)
T KOG0618|consen 281 LRISRITSLVSLSAAYNELEY---IPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENN 357 (1081)
T ss_pred HHHhhhhhHHHHHhhhhhhhh---CCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchh
Confidence 555556666666666554322 2222333335666666554 23344321 1 1
Q ss_pred CCCcceEEEEeccCCCcchhhhccCccccceeeccccCCCeEEEecCCCcccceeeeccCCCceeeEEccCcccccceEE
Q 002663 737 LKNLIGLRLILSGLTEDPISILQALPNLLELMLHGGYDYELFHFEAGWFPKLRKLVLLNFEAVKLVIIEKGAMPDIRELW 816 (895)
Q Consensus 737 l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~ 816 (895)
++.|+.|.+.+|.++....+.+-+.++|+.|+|++|.+..........++.|+.|+|++| .++.+|....+++.|++|.
T Consensus 358 ~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGN-kL~~Lp~tva~~~~L~tL~ 436 (1081)
T KOG0618|consen 358 HAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGN-KLTTLPDTVANLGRLHTLR 436 (1081)
T ss_pred hHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccc-hhhhhhHHHHhhhhhHHHh
Confidence 356788888888888888888888899999999888776554455567888888999987 5788887778888888888
Q ss_pred EccCCCCcccCccccccccCcEEEEEcChhhhhcccccceeEEeccCCcEEEEEEeCCe
Q 002663 817 SGPCPLLMEIPIGIEHLRNLELFTFHDMSKQVCCMTKNEKWEVTEHIPDVRVTYIDAGQ 875 (895)
Q Consensus 817 l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~~~~~i~~~~~~~i~~~~p~l~~l~l~~~~ 875 (895)
..+|..+ .+| .+..+++|+.+|++.|. +.....+.. ---|+|+.+.+.||.
T Consensus 437 ahsN~l~-~fP-e~~~l~qL~~lDlS~N~-----L~~~~l~~~-~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 437 AHSNQLL-SFP-ELAQLPQLKVLDLSCNN-----LSEVTLPEA-LPSPNLKYLDLSGNT 487 (1081)
T ss_pred hcCCcee-ech-hhhhcCcceEEecccch-----hhhhhhhhh-CCCcccceeeccCCc
Confidence 8877744 567 77888888888888874 222111111 001688888888765
No 13
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.71 E-value=2.3e-20 Score=186.50 Aligned_cols=260 Identities=22% Similarity=0.222 Sum_probs=165.2
Q ss_pred eeEEecCCCCCCcCccccccccCCCeEeecCCCcccccccccCcCCCcEEEcCcccccccchhhhccccCCeEEeecccc
Q 002663 542 MKVLDLEDSPINYLPEGVGNLFNLHLLNARNTKLKIIPKSIGNLLSLEILVLARTFVSELPEEIRNLKKLRSLIVFHYKY 621 (895)
Q Consensus 542 L~~L~L~~~~~~~l~~~i~~l~~Lr~L~L~~~~l~~lp~~i~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~ 621 (895)
|+.|+++.|.+..+.+.+.++..|.+|++.++.+.++|+.++.+..+..|+.+++++.++|..++.+.+|++|+.+.+
T Consensus 47 l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n-- 124 (565)
T KOG0472|consen 47 LQKLILSHNDLEVLREDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSN-- 124 (565)
T ss_pred hhhhhhccCchhhccHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhcccc--
Confidence 445555666555555555566666666666666666666666666666666666666666666666666666655553
Q ss_pred cccccccccccccccccccCcccceEEeeeecC-hHHHHHhhccccCcEEEEEecCCCcchHHHHhhccCCCCEEEEEec
Q 002663 622 ITGSIIPTEVAAKIHRGFGSLRGLLVLSTIEAD-SQVLKELMMLRQLRMLSIRPQNGNGRDLCALIANLENVETLGVLMT 700 (895)
Q Consensus 622 ~~~~~~~~~~~~~~p~~i~~l~~L~~L~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~l~~L~~L~l~~~ 700 (895)
....+|.+++.+..|..|...++. .+.+..+.++.+|..|.+.++.... +++..-+++
T Consensus 125 ---------~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~--l~~~~i~m~---------- 183 (565)
T KOG0472|consen 125 ---------ELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKA--LPENHIAMK---------- 183 (565)
T ss_pred ---------ceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhh--CCHHHHHHH----------
Confidence 233444444444444444332221 1223334444444444444432221 222222233
Q ss_pred CcccccccccCcCCCcCccEEEEecc-CCCCCcccccCCCcceEEEEeccCCCcchhhhccCccccceeeccccCCCeEE
Q 002663 701 SKEEILDLQSLSSPPQHLRYLSLRGN-MKKLPDWILKLKNLIGLRLILSGLTEDPISILQALPNLLELMLHGGYDYELFH 779 (895)
Q Consensus 701 ~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~lp~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~ 779 (895)
.|++|+...| .+.+|+.++.+.+|..|+|..|++... +.|++|..|++|.++.|++.-...
T Consensus 184 ----------------~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~l--Pef~gcs~L~Elh~g~N~i~~lpa 245 (565)
T KOG0472|consen 184 ----------------RLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFL--PEFPGCSLLKELHVGENQIEMLPA 245 (565)
T ss_pred ----------------HHHhcccchhhhhcCChhhcchhhhHHHHhhhcccccC--CCCCccHHHHHHHhcccHHHhhHH
Confidence 4555555555 367888889999999999999887533 367888899999998877643323
Q ss_pred EecCCCcccceeeeccCCCceeeEEccCcccccceEEEccCCCCcccCccccccccCcEEEEEcCh
Q 002663 780 FEAGWFPKLRKLVLLNFEAVKLVIIEKGAMPDIRELWSGPCPLLMEIPIGIEHLRNLELFTFHDMS 845 (895)
Q Consensus 780 ~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~ 845 (895)
.....+++|..|++.+| .++++|.+..-+.+|+.|++++|. +..+|..++++ .|+.|-+.|+|
T Consensus 246 e~~~~L~~l~vLDLRdN-klke~Pde~clLrsL~rLDlSNN~-is~Lp~sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 246 EHLKHLNSLLVLDLRDN-KLKEVPDEICLLRSLERLDLSNND-ISSLPYSLGNL-HLKFLALEGNP 308 (565)
T ss_pred HHhcccccceeeecccc-ccccCchHHHHhhhhhhhcccCCc-cccCCcccccc-eeeehhhcCCc
Confidence 33457889999999987 588888888888999999999887 55788889999 89999999998
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.61 E-value=1.3e-17 Score=184.14 Aligned_cols=323 Identities=20% Similarity=0.174 Sum_probs=205.1
Q ss_pred CCcceeEEEEEccCCCCccchhcccCCCceeeEEecCCCCCCcCccccccccCCCeEeecCCCcccccccccCcC-----
Q 002663 512 KDWKVRSVILFNVDKLPDSFMKSCIANFKLMKVLDLEDSPINYLPEGVGNLFNLHLLNARNTKLKIIPKSIGNLL----- 586 (895)
Q Consensus 512 ~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~i~~l~~Lr~L~L~~~~l~~lp~~i~~l~----- 586 (895)
...+++.+.+..+.. ...+....++++|++|.|.+|.+..+|.++..+++|+||++++|.+..+|..+..+.
T Consensus 66 ~l~~L~~ln~s~n~i---~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~ 142 (1081)
T KOG0618|consen 66 LLSHLRQLNLSRNYI---RSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFNHFGPIPLVIEVLTAEEEL 142 (1081)
T ss_pred hHHHHhhcccchhhH---hhCchhhhhhhcchhheeccchhhcCchhHHhhhcccccccchhccCCCchhHHhhhHHHHH
Confidence 445555555544432 223355567777777777777777777777777777777777776665554332221
Q ss_pred -----------------------------------CCcE-EEcCcccccccchhhh--------------------cccc
Q 002663 587 -----------------------------------SLEI-LVLARTFVSELPEEIR--------------------NLKK 610 (895)
Q Consensus 587 -----------------------------------~L~~-L~L~~~~l~~lp~~i~--------------------~l~~ 610 (895)
+|++ |+|++|.+..+ .+. ..++
T Consensus 143 ~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~~~--dls~~~~l~~l~c~rn~ls~l~~~g~~ 220 (1081)
T KOG0618|consen 143 AASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNEMEVL--DLSNLANLEVLHCERNQLSELEISGPS 220 (1081)
T ss_pred hhhcchhhhhhccccchhhhhhhhhcccchhcchhhhheeeecccchhhhh--hhhhccchhhhhhhhcccceEEecCcc
Confidence 2222 55555543311 011 1234
Q ss_pred CCeEEeecccccccc-----------cccccccccccccccCcccceEEeeeecC-hHHHHHhhccccCcEEEEEecCCC
Q 002663 611 LRSLIVFHYKYITGS-----------IIPTEVAAKIHRGFGSLRGLLVLSTIEAD-SQVLKELMMLRQLRMLSIRPQNGN 678 (895)
Q Consensus 611 L~~L~l~~~~~~~~~-----------~~~~~~~~~~p~~i~~l~~L~~L~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~ 678 (895)
|++|+...|...+.. .+.......+|..++.+.+|+.+....+. ...+..+...++|+.|.+..+...
T Consensus 221 l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~ 300 (1081)
T KOG0618|consen 221 LTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELE 300 (1081)
T ss_pred hheeeeccCcceeeccccccccceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhh
Confidence 444444444432211 12234456788888999999998877763 334555666667776666654332
Q ss_pred cchHHHHhhccCCCCEEEEEecCcccccc----------------------cccCc-CCCcCccEEEEeccC--CCCCcc
Q 002663 679 GRDLCALIANLENVETLGVLMTSKEEILD----------------------LQSLS-SPPQHLRYLSLRGNM--KKLPDW 733 (895)
Q Consensus 679 ~~~l~~~l~~l~~L~~L~l~~~~~~~~~~----------------------l~~~~-~~~~~L~~L~l~~~~--~~lp~~ 733 (895)
.++..+..+++|++|++..|....++. ++... ...+.|+.|.+.+|. ...-+.
T Consensus 301 --yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~ 378 (1081)
T KOG0618|consen 301 --YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPV 378 (1081)
T ss_pred --hCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhh
Confidence 244455556677777777665443221 01000 111357778887773 333445
Q ss_pred cccCCCcceEEEEeccCCCcchhhhccCccccceeeccccCCCeEEEecCCCcccceeeeccCCCceeeEEccCcccccc
Q 002663 734 ILKLKNLIGLRLILSGLTEDPISILQALPNLLELMLHGGYDYELFHFEAGWFPKLRKLVLLNFEAVKLVIIEKGAMPDIR 813 (895)
Q Consensus 734 ~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~ 813 (895)
+.++.+|+.|+|+.|.+...+...+.+++.|++|+|+||.+. .++.....++.|++|...+| .+...| +...+|.|+
T Consensus 379 l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN-~l~~fP-e~~~l~qL~ 455 (1081)
T KOG0618|consen 379 LVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSN-QLLSFP-ELAQLPQLK 455 (1081)
T ss_pred hccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCC-ceeech-hhhhcCcce
Confidence 778899999999999998888888999999999999999875 45566678889999988876 466677 778899999
Q ss_pred eEEEccCCCCc-ccCccccccccCcEEEEEcCh
Q 002663 814 ELWSGPCPLLM-EIPIGIEHLRNLELFTFHDMS 845 (895)
Q Consensus 814 ~L~l~~c~~l~-~lp~~~~~l~~L~~L~l~~c~ 845 (895)
.+|++.|.... .+|..... ++|++|+++||+
T Consensus 456 ~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 456 VLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNT 487 (1081)
T ss_pred EEecccchhhhhhhhhhCCC-cccceeeccCCc
Confidence 99999776332 23333322 799999999997
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.60 E-value=1.8e-15 Score=173.47 Aligned_cols=254 Identities=19% Similarity=0.179 Sum_probs=171.0
Q ss_pred eeeEEecCCCCCCcCccccccccCCCeEeecCCCcccccccccCcCCCcEEEcCcccccccchhhhccccCCeEEeeccc
Q 002663 541 LMKVLDLEDSPINYLPEGVGNLFNLHLLNARNTKLKIIPKSIGNLLSLEILVLARTFVSELPEEIRNLKKLRSLIVFHYK 620 (895)
Q Consensus 541 ~L~~L~L~~~~~~~l~~~i~~l~~Lr~L~L~~~~l~~lp~~i~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~ 620 (895)
.-.+|+|+.+.++.+|..+. .+|+.|++.+|+++.+|.. +++|++|++++|.++.+|.. .++|++|++++|.
T Consensus 202 ~~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~ 273 (788)
T PRK15387 202 GNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNP 273 (788)
T ss_pred CCcEEEcCCCCCCcCCcchh--cCCCEEEccCCcCCCCCCC---CCCCcEEEecCCccCcccCc---ccccceeeccCCc
Confidence 35567888888877777665 3788888888888877752 46788888888877777753 3567777777653
Q ss_pred ccccccccccccccccccccCcccceEEeeeecChHHHHHhhccccCcEEEEEecCCCcchHHHHhhccCCCCEEEEEec
Q 002663 621 YITGSIIPTEVAAKIHRGFGSLRGLLVLSTIEADSQVLKELMMLRQLRMLSIRPQNGNGRDLCALIANLENVETLGVLMT 700 (895)
Q Consensus 621 ~~~~~~~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~l~~L~~L~l~~~ 700 (895)
...+|.. ..+|+.|.+..+....+.. .+++|+.|++++|.+.. ++. ...+|+.|.+.+|
T Consensus 274 -----------L~~Lp~l---p~~L~~L~Ls~N~Lt~LP~--~p~~L~~LdLS~N~L~~--Lp~---lp~~L~~L~Ls~N 332 (788)
T PRK15387 274 -----------LTHLPAL---PSGLCKLWIFGNQLTSLPV--LPPGLQELSVSDNQLAS--LPA---LPSELCKLWAYNN 332 (788)
T ss_pred -----------hhhhhhc---hhhcCEEECcCCccccccc--cccccceeECCCCcccc--CCC---CcccccccccccC
Confidence 2233321 1345555554442221111 24678888888875543 222 1245778888877
Q ss_pred CcccccccccCcCCCcCccEEEEecc-CCCCCcccccCCCcceEEEEeccCCCcchhhhccCccccceeeccccCCCeEE
Q 002663 701 SKEEILDLQSLSSPPQHLRYLSLRGN-MKKLPDWILKLKNLIGLRLILSGLTEDPISILQALPNLLELMLHGGYDYELFH 779 (895)
Q Consensus 701 ~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~lp~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~ 779 (895)
....+ + ..+.+|+.|+|++| +..+|.. .++|+.|++++|.+...+ . ..++|+.|+|++|.+.. ++
T Consensus 333 ~L~~L---P---~lp~~Lq~LdLS~N~Ls~LP~l---p~~L~~L~Ls~N~L~~LP-~---l~~~L~~LdLs~N~Lt~-LP 398 (788)
T PRK15387 333 QLTSL---P---TLPSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLTSLP-A---LPSGLKELIVSGNRLTS-LP 398 (788)
T ss_pred ccccc---c---ccccccceEecCCCccCCCCCC---CcccceehhhccccccCc-c---cccccceEEecCCcccC-CC
Confidence 65433 2 22348999999987 4567753 467888899988876432 2 23578999999887763 32
Q ss_pred EecCCCcccceeeeccCCCceeeEEccCcccccceEEEccCCCCcccCccccccccCcEEEEEcCh
Q 002663 780 FEAGWFPKLRKLVLLNFEAVKLVIIEKGAMPDIRELWSGPCPLLMEIPIGIEHLRNLELFTFHDMS 845 (895)
Q Consensus 780 ~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~ 845 (895)
. ..++|+.|++++|. +..+|. .+.+|+.|++++|. ++.+|..+.++++|+.|++++|+
T Consensus 399 ~---l~s~L~~LdLS~N~-LssIP~---l~~~L~~L~Ls~Nq-Lt~LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 399 V---LPSELKELMVSGNR-LTSLPM---LPSGLLSLSVYRNQ-LTRLPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred C---cccCCCEEEccCCc-CCCCCc---chhhhhhhhhccCc-ccccChHHhhccCCCeEECCCCC
Confidence 2 34689999999885 566653 24578889999887 55789889999999999999997
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.51 E-value=1.9e-14 Score=166.35 Aligned_cols=242 Identities=14% Similarity=0.145 Sum_probs=118.8
Q ss_pred eeEEecCCCCCCcCccccccccCCCeEeecCCCcccccccccCcCCCcEEEcCcccccccchhhhccccCCeEEeecccc
Q 002663 542 MKVLDLEDSPINYLPEGVGNLFNLHLLNARNTKLKIIPKSIGNLLSLEILVLARTFVSELPEEIRNLKKLRSLIVFHYKY 621 (895)
Q Consensus 542 L~~L~L~~~~~~~l~~~i~~l~~Lr~L~L~~~~l~~lp~~i~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~ 621 (895)
...|+++++.++.+|..+. ++|+.|+|++|.++.+|..+. .+|++|++++|.+..+|..+. ++|+.|++++|.
T Consensus 180 ~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~- 252 (754)
T PRK15370 180 KTELRLKILGLTTIPACIP--EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSINR- 252 (754)
T ss_pred ceEEEeCCCCcCcCCcccc--cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcCCc-
Confidence 4455555555555555442 355566666666655555443 356666666555555555332 245555555532
Q ss_pred cccccccccccccccccccCcccceEEeeeecChHHHHHhhccccCcEEEEEecCCCcchHHHHhhccCCCCEEEEEecC
Q 002663 622 ITGSIIPTEVAAKIHRGFGSLRGLLVLSTIEADSQVLKELMMLRQLRMLSIRPQNGNGRDLCALIANLENVETLGVLMTS 701 (895)
Q Consensus 622 ~~~~~~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~l~~L~~L~l~~~~ 701 (895)
...+|..+. .+|+.|++++|.+.. ++..+ .++|+.|++++|.
T Consensus 253 ----------L~~LP~~l~------------------------s~L~~L~Ls~N~L~~--LP~~l--~~sL~~L~Ls~N~ 294 (754)
T PRK15370 253 ----------ITELPERLP------------------------SALQSLDLFHNKISC--LPENL--PEELRYLSVYDNS 294 (754)
T ss_pred ----------cCcCChhHh------------------------CCCCEEECcCCccCc--ccccc--CCCCcEEECCCCc
Confidence 112222111 123333333322221 12111 1245555555543
Q ss_pred cccccccccCcCCCcCccEEEEecc-CCCCCcccccCCCcceEEEEeccCCCcchhhhccCccccceeeccccCCCeEEE
Q 002663 702 KEEILDLQSLSSPPQHLRYLSLRGN-MKKLPDWILKLKNLIGLRLILSGLTEDPISILQALPNLLELMLHGGYDYELFHF 780 (895)
Q Consensus 702 ~~~~~~l~~~~~~~~~L~~L~l~~~-~~~lp~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~ 780 (895)
.... +.. .+++|+.|++++| ...+|..+ .++|+.|++++|.++..+ ..+ .++|+.|+|++|.+.. ++.
T Consensus 295 Lt~L---P~~--lp~sL~~L~Ls~N~Lt~LP~~l--~~sL~~L~Ls~N~Lt~LP-~~l--~~sL~~L~Ls~N~L~~-LP~ 363 (754)
T PRK15370 295 IRTL---PAH--LPSGITHLNVQSNSLTALPETL--PPGLKTLEAGENALTSLP-ASL--PPELQVLDVSKNQITV-LPE 363 (754)
T ss_pred cccC---ccc--chhhHHHHHhcCCccccCCccc--cccceeccccCCccccCC-hhh--cCcccEEECCCCCCCc-CCh
Confidence 3221 110 1125666666655 23444332 256666666666665432 222 2567777777665542 222
Q ss_pred ecCCCcccceeeeccCCCceeeEEccCcccccceEEEccCCCCcccCcccc----ccccCcEEEEEcCh
Q 002663 781 EAGWFPKLRKLVLLNFEAVKLVIIEKGAMPDIRELWSGPCPLLMEIPIGIE----HLRNLELFTFHDMS 845 (895)
Q Consensus 781 ~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~lp~~~~----~l~~L~~L~l~~c~ 845 (895)
. -.++|++|+|++|. +..+|... .++|+.|++++|.. ..+|..+. .++++..|++.+||
T Consensus 364 ~--lp~~L~~LdLs~N~-Lt~LP~~l--~~sL~~LdLs~N~L-~~LP~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 364 T--LPPTITTLDVSRNA-LTNLPENL--PAALQIMQASRNNL-VRLPESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred h--hcCCcCEEECCCCc-CCCCCHhH--HHHHHHHhhccCCc-ccCchhHHHHhhcCCCccEEEeeCCC
Confidence 1 13567777777763 44554332 23577777777663 35554433 34667777777776
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.50 E-value=2.6e-14 Score=163.90 Aligned_cols=242 Identities=19% Similarity=0.127 Sum_probs=137.4
Q ss_pred eeeEEecCCCCCCcCccccccccCCCeEeecCCCcccccccccCcCCCcEEEcCcccccccchhhhccccCCeEEeeccc
Q 002663 541 LMKVLDLEDSPINYLPEGVGNLFNLHLLNARNTKLKIIPKSIGNLLSLEILVLARTFVSELPEEIRNLKKLRSLIVFHYK 620 (895)
Q Consensus 541 ~L~~L~L~~~~~~~l~~~i~~l~~Lr~L~L~~~~l~~lp~~i~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~ 620 (895)
+|+.|++.+|.++.+|.. +++|++|++++|.++.+|.. .++|+.|++++|.+..+|.. .++|+.|++++|.
T Consensus 223 ~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~L~~Lp~l---p~~L~~L~Ls~N~ 293 (788)
T PRK15387 223 HITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNPLTHLPAL---PSGLCKLWIFGNQ 293 (788)
T ss_pred CCCEEEccCCcCCCCCCC---CCCCcEEEecCCccCcccCc---ccccceeeccCCchhhhhhc---hhhcCEEECcCCc
Confidence 344555555555544432 24455555555555544432 23444555555544444431 1334444444432
Q ss_pred ccccccccccccccccccccCcccceEEeeeecChHHHHHhhccccCcEEEEEecCCCcchHHHHhhccCCCCEEEEEec
Q 002663 621 YITGSIIPTEVAAKIHRGFGSLRGLLVLSTIEADSQVLKELMMLRQLRMLSIRPQNGNGRDLCALIANLENVETLGVLMT 700 (895)
Q Consensus 621 ~~~~~~~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~l~~L~~L~l~~~ 700 (895)
+..+|.. +++|+.|++.++....+.. ...+|+.|.+++|.+.. ++. ...+|+.|++++|
T Consensus 294 -----------Lt~LP~~---p~~L~~LdLS~N~L~~Lp~--lp~~L~~L~Ls~N~L~~--LP~---lp~~Lq~LdLS~N 352 (788)
T PRK15387 294 -----------LTSLPVL---PPGLQELSVSDNQLASLPA--LPSELCKLWAYNNQLTS--LPT---LPSGLQELSVSDN 352 (788)
T ss_pred -----------ccccccc---ccccceeECCCCccccCCC--CcccccccccccCcccc--ccc---cccccceEecCCC
Confidence 1122221 1334444443331111111 11345666666654432 221 1247888999888
Q ss_pred CcccccccccCcCCCcCccEEEEecc-CCCCCcccccCCCcceEEEEeccCCCcchhhhccCccccceeeccccCCCeEE
Q 002663 701 SKEEILDLQSLSSPPQHLRYLSLRGN-MKKLPDWILKLKNLIGLRLILSGLTEDPISILQALPNLLELMLHGGYDYELFH 779 (895)
Q Consensus 701 ~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~lp~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~ 779 (895)
.....+ . .+.+|+.|++++| +..+|.. .++|+.|+|++|.++..+. ..++|+.|++++|.+.. ++
T Consensus 353 ~Ls~LP---~---lp~~L~~L~Ls~N~L~~LP~l---~~~L~~LdLs~N~Lt~LP~----l~s~L~~LdLS~N~Lss-IP 418 (788)
T PRK15387 353 QLASLP---T---LPSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLTSLPV----LPSELKELMVSGNRLTS-LP 418 (788)
T ss_pred ccCCCC---C---CCcccceehhhccccccCccc---ccccceEEecCCcccCCCC----cccCCCEEEccCCcCCC-CC
Confidence 655432 2 2347888888887 3556653 3678999999998875332 23679999999988764 33
Q ss_pred EecCCCcccceeeeccCCCceeeEEccCcccccceEEEccCCCCcccCccc
Q 002663 780 FEAGWFPKLRKLVLLNFEAVKLVIIEKGAMPDIRELWSGPCPLLMEIPIGI 830 (895)
Q Consensus 780 ~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~lp~~~ 830 (895)
. .+.+|+.|++++|. ++.+|..+..+++|+.|++++|+.....|..+
T Consensus 419 ~---l~~~L~~L~Ls~Nq-Lt~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 419 M---LPSGLLSLSVYRNQ-LTRLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred c---chhhhhhhhhccCc-ccccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 2 24578899999874 67888888889999999999999766555444
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.38 E-value=2.7e-13 Score=156.88 Aligned_cols=72 Identities=29% Similarity=0.473 Sum_probs=41.2
Q ss_pred eeeEEecCCCCCCcCccccccccCCCeEeecCCCcccccccccCcCCCcEEEcCcccccccchhhhccccCCeEEeec
Q 002663 541 LMKVLDLEDSPINYLPEGVGNLFNLHLLNARNTKLKIIPKSIGNLLSLEILVLARTFVSELPEEIRNLKKLRSLIVFH 618 (895)
Q Consensus 541 ~L~~L~L~~~~~~~l~~~i~~l~~Lr~L~L~~~~l~~lp~~i~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~ 618 (895)
.|+.|+|++|.++.+|..+. .+|++|++++|.++.+|..+. .+|+.|+|++|.+..+|..+. .+|+.|++++
T Consensus 200 ~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~ 271 (754)
T PRK15370 200 QITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSINRITELPERLP--SALQSLDLFH 271 (754)
T ss_pred CCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcCCccCcCChhHh--CCCCEEECcC
Confidence 45566666666666655443 356666666666666655432 356666666666666665443 3566666654
No 19
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.37 E-value=1.2e-14 Score=128.86 Aligned_cols=132 Identities=30% Similarity=0.427 Sum_probs=73.2
Q ss_pred cCCCceeeEEecCCCCCCcCccccccccCCCeEeecCCCcccccccccCcCCCcEEEcCccccc--ccchhhhccccCCe
Q 002663 536 IANFKLMKVLDLEDSPINYLPEGVGNLFNLHLLNARNTKLKIIPKSIGNLLSLEILVLARTFVS--ELPEEIRNLKKLRS 613 (895)
Q Consensus 536 ~~~~~~L~~L~L~~~~~~~l~~~i~~l~~Lr~L~L~~~~l~~lp~~i~~l~~L~~L~L~~~~l~--~lp~~i~~l~~L~~ 613 (895)
+..+++|++|++.+|+++++|.+++.+++||.|++.-|.+..+|..++.++-|+.|||.+|++. .+|..+..+.-|+.
T Consensus 52 ia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlra 131 (264)
T KOG0617|consen 52 IAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRA 131 (264)
T ss_pred HHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhccccccccccCCcchhHHHHHHH
Confidence 3445555555555555555555555555555555555555555555555555555555554332 44555555555555
Q ss_pred EEeecccccccccccccccccccccccCcccceEEeeeecC-hHHHHHhhccccCcEEEEEecCCC
Q 002663 614 LIVFHYKYITGSIIPTEVAAKIHRGFGSLRGLLVLSTIEAD-SQVLKELMMLRQLRMLSIRPQNGN 678 (895)
Q Consensus 614 L~l~~~~~~~~~~~~~~~~~~~p~~i~~l~~L~~L~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~ 678 (895)
|.++.| .-..+|..+++|++||.|.+...+ ...+.+++.+..|+.|+|.++...
T Consensus 132 lyl~dn-----------dfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl~ 186 (264)
T KOG0617|consen 132 LYLGDN-----------DFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRLT 186 (264)
T ss_pred HHhcCC-----------CcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccceee
Confidence 555542 234566667777777777766553 345566666666666666665443
No 20
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.34 E-value=1e-12 Score=154.53 Aligned_cols=312 Identities=23% Similarity=0.201 Sum_probs=182.5
Q ss_pred cccCCcceeEEEEEccCCCCccchhcccCCCceeeEEecCCCC--CCcCc-cccccccCCCeEeecC-CCcccccccccC
Q 002663 509 ESIKDWKVRSVILFNVDKLPDSFMKSCIANFKLMKVLDLEDSP--INYLP-EGVGNLFNLHLLNARN-TKLKIIPKSIGN 584 (895)
Q Consensus 509 ~~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~--~~~l~-~~i~~l~~Lr~L~L~~-~~l~~lp~~i~~ 584 (895)
.......+|...+..+..... ..-..++.|++|-+..+. +..++ ..|..+++|++|||++ ..+.++|.+|++
T Consensus 518 ~~~~~~~~rr~s~~~~~~~~~----~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~ 593 (889)
T KOG4658|consen 518 QVKSWNSVRRMSLMNNKIEHI----AGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGE 593 (889)
T ss_pred cccchhheeEEEEeccchhhc----cCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhh
Confidence 344455677777766654211 112345679999999886 55554 3478899999999996 457899999999
Q ss_pred cCCCcEEEcCcccccccchhhhccccCCeEEeecccccccccccccccccccccccCcccceEEeeeecC----hHHHHH
Q 002663 585 LLSLEILVLARTFVSELPEEIRNLKKLRSLIVFHYKYITGSIIPTEVAAKIHRGFGSLRGLLVLSTIEAD----SQVLKE 660 (895)
Q Consensus 585 l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~p~~i~~l~~L~~L~~~~~~----~~~~~~ 660 (895)
|.+|++|+++++.+..+|.++++|.+|.+|++..+.. ...+|.....|.+|++|.+.... .....+
T Consensus 594 Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~----------l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~e 663 (889)
T KOG4658|consen 594 LVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGR----------LESIPGILLELQSLRVLRLPRSALSNDKLLLKE 663 (889)
T ss_pred hhhhhcccccCCCccccchHHHHHHhhheeccccccc----------cccccchhhhcccccEEEeeccccccchhhHHh
Confidence 9999999999999999999999999999999987532 22224444557777777766542 334444
Q ss_pred hhccccCcEEEEEecCCCcchHHHHhhccCCCCEEEEEecCcccccccccCcCCCcCccEEEEecc-CCCCCcccccCCC
Q 002663 661 LMMLRQLRMLSIRPQNGNGRDLCALIANLENVETLGVLMTSKEEILDLQSLSSPPQHLRYLSLRGN-MKKLPDWILKLKN 739 (895)
Q Consensus 661 l~~l~~L~~L~l~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~lp~~~~~l~~ 739 (895)
+..+.+|+.+.+..... .+...+.....|.+ ..+.+.+.++ ....+..+..+.+
T Consensus 664 l~~Le~L~~ls~~~~s~---~~~e~l~~~~~L~~----------------------~~~~l~~~~~~~~~~~~~~~~l~~ 718 (889)
T KOG4658|consen 664 LENLEHLENLSITISSV---LLLEDLLGMTRLRS----------------------LLQSLSIEGCSKRTLISSLGSLGN 718 (889)
T ss_pred hhcccchhhheeecchh---HhHhhhhhhHHHHH----------------------HhHhhhhcccccceeecccccccC
Confidence 55555555544433111 00111111111111 1222222222 2345556677888
Q ss_pred cceEEEEeccCCCcchhhhc------cCccccceeeccccCCCeEEEecCCCcccceeeeccCCCceeeEEccCcccccc
Q 002663 740 LIGLRLILSGLTEDPISILQ------ALPNLLELMLHGGYDYELFHFEAGWFPKLRKLVLLNFEAVKLVIIEKGAMPDIR 813 (895)
Q Consensus 740 L~~L~L~~~~l~~~~~~~l~------~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~ 813 (895)
|+.|.+.+|........... .+++|..+.+.+|.....+.. .-..|+|+.|.+.+|..++++......+..++
T Consensus 719 L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~-~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~ 797 (889)
T KOG4658|consen 719 LEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTW-LLFAPHLTSLSLVSCRLLEDIIPKLKALLELK 797 (889)
T ss_pred cceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccch-hhccCcccEEEEecccccccCCCHHHHhhhcc
Confidence 88888888876543322211 144555555555544332221 23568999999999887777543333444444
Q ss_pred eEEEccC-----------CCCcccCccccccccCcEEEEEcChhhhhcccccceeEEeccCCcEEEEEEeC
Q 002663 814 ELWSGPC-----------PLLMEIPIGIEHLRNLELFTFHDMSKQVCCMTKNEKWEVTEHIPDVRVTYIDA 873 (895)
Q Consensus 814 ~L~l~~c-----------~~l~~lp~~~~~l~~L~~L~l~~c~~~~~~i~~~~~~~i~~~~p~l~~l~l~~ 873 (895)
.+.+..+ +.+..+-..=-..+.|+++.+..|| +. ..+|.+..+.+.+
T Consensus 798 ~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~~~l~~~~ve~~p------------~l-~~~P~~~~~~i~~ 855 (889)
T KOG4658|consen 798 ELILPFNKLEGLRMLCSLGGLPQLYWLPLSFLKLEELIVEECP------------KL-GKLPLLSTLTIVG 855 (889)
T ss_pred cEEecccccccceeeecCCCCceeEecccCccchhheehhcCc------------cc-ccCccccccceec
Confidence 3222222 2111111000112236666666666 55 6678877776555
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.33 E-value=2.8e-14 Score=126.47 Aligned_cols=154 Identities=22% Similarity=0.274 Sum_probs=113.1
Q ss_pred CCCceeeEEecCCCCCCcCccccccccCCCeEeecCCCcccccccccCcCCCcEEEcCcccccccchhhhccccCCeEEe
Q 002663 537 ANFKLMKVLDLEDSPINYLPEGVGNLFNLHLLNARNTKLKIIPKSIGNLLSLEILVLARTFVSELPEEIRNLKKLRSLIV 616 (895)
Q Consensus 537 ~~~~~L~~L~L~~~~~~~l~~~i~~l~~Lr~L~L~~~~l~~lp~~i~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l 616 (895)
..+.+...|.|++|.++.+|+.|..+.+|+.|++.+|+|+++|.+++.+++|++|+++-|.+..+|.+++.+|-|+.|++
T Consensus 30 f~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldl 109 (264)
T KOG0617|consen 30 FNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDL 109 (264)
T ss_pred cchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhc
Confidence 45677888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccccccccccccccccccccccCcccceEEeeeecC-hHHHHHhhccccCcEEEEEecCCCcchHHHHhhccCCCCEE
Q 002663 617 FHYKYITGSIIPTEVAAKIHRGFGSLRGLLVLSTIEAD-SQVLKELMMLRQLRMLSIRPQNGNGRDLCALIANLENVETL 695 (895)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~p~~i~~l~~L~~L~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~l~~L~~L 695 (895)
+.|+.-. ..+|..|.-++.|+-|.+.+.+ ...+.+++++++|+.|.+..+... .+|..++.+..|+.|
T Consensus 110 tynnl~e---------~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll--~lpkeig~lt~lrel 178 (264)
T KOG0617|consen 110 TYNNLNE---------NSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLL--SLPKEIGDLTRLREL 178 (264)
T ss_pred ccccccc---------ccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchh--hCcHHHHHHHHHHHH
Confidence 8875322 2345555555555555554443 223455666666666666554333 245555566666666
Q ss_pred EEEecC
Q 002663 696 GVLMTS 701 (895)
Q Consensus 696 ~l~~~~ 701 (895)
++.+|.
T Consensus 179 hiqgnr 184 (264)
T KOG0617|consen 179 HIQGNR 184 (264)
T ss_pred hcccce
Confidence 655553
No 22
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.32 E-value=8.4e-14 Score=139.93 Aligned_cols=269 Identities=18% Similarity=0.172 Sum_probs=139.9
Q ss_pred eeEEecCCCCCCcCc-cccccccCCCeEeecCCCcccc-cccccCcCCCcEEEcCc-ccccccchh-hhccccCCeEEee
Q 002663 542 MKVLDLEDSPINYLP-EGVGNLFNLHLLNARNTKLKII-PKSIGNLLSLEILVLAR-TFVSELPEE-IRNLKKLRSLIVF 617 (895)
Q Consensus 542 L~~L~L~~~~~~~l~-~~i~~l~~Lr~L~L~~~~l~~l-p~~i~~l~~L~~L~L~~-~~l~~lp~~-i~~l~~L~~L~l~ 617 (895)
-..++|..|.|+.+| ..|+.+++||.|||++|.|+.| |..|..|.+|-.|-+.+ |.|+.+|.. ++.|..|+.|.+.
T Consensus 69 tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllN 148 (498)
T KOG4237|consen 69 TVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLN 148 (498)
T ss_pred ceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcC
Confidence 456777777777775 4567777788888877777755 56677777776666655 577777763 5567666666654
Q ss_pred cccccccccccccccccccccccCcccceEEeeeecChHHHHHhhccccCcEEEEEecCCCcchHHH-HhhccCCCCEEE
Q 002663 618 HYKYITGSIIPTEVAAKIHRGFGSLRGLLVLSTIEADSQVLKELMMLRQLRMLSIRPQNGNGRDLCA-LIANLENVETLG 696 (895)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~-~l~~l~~L~~L~ 696 (895)
-|. +.......+..+++|..|.+.++.... ++. .+..+..++.+.
T Consensus 149 an~--------------------------------i~Cir~~al~dL~~l~lLslyDn~~q~--i~~~tf~~l~~i~tlh 194 (498)
T KOG4237|consen 149 ANH--------------------------------INCIRQDALRDLPSLSLLSLYDNKIQS--ICKGTFQGLAAIKTLH 194 (498)
T ss_pred hhh--------------------------------hcchhHHHHHHhhhcchhcccchhhhh--hccccccchhccchHh
Confidence 431 122233445556666666665543221 222 344455555555
Q ss_pred EEecCcccccccccCcCC----------CcCccEEEEecc-CCCCCcc-c-ccCCCcceEEEEeccCC-CcchhhhccCc
Q 002663 697 VLMTSKEEILDLQSLSSP----------PQHLRYLSLRGN-MKKLPDW-I-LKLKNLIGLRLILSGLT-EDPISILQALP 762 (895)
Q Consensus 697 l~~~~~~~~~~l~~~~~~----------~~~L~~L~l~~~-~~~lp~~-~-~~l~~L~~L~L~~~~l~-~~~~~~l~~l~ 762 (895)
+..+.......++..... ........+.+. ..+.+.. + ..+..+.+=-.+.|... .-+...|.+||
T Consensus 195 lA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~ 274 (498)
T KOG4237|consen 195 LAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLP 274 (498)
T ss_pred hhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcc
Confidence 554432221111111100 000000001110 0111100 0 00111111112223222 22334566677
Q ss_pred cccceeeccccCCCeEEEecCCCcccceeeeccCCCceeeEE-ccCcccccceEEEccCCCCcccCccccccccCcEEEE
Q 002663 763 NLLELMLHGGYDYELFHFEAGWFPKLRKLVLLNFEAVKLVII-EKGAMPDIRELWSGPCPLLMEIPIGIEHLRNLELFTF 841 (895)
Q Consensus 763 ~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l 841 (895)
+|+.|+|++|.+...-...+.+..+|+.|.|..|. ++.+.. .+.++..|+.|++.+|....--|..|..+.+|.+|++
T Consensus 275 ~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~-l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l 353 (498)
T KOG4237|consen 275 NLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNK-LEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNL 353 (498)
T ss_pred cceEeccCCCccchhhhhhhcchhhhhhhhcCcch-HHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeeh
Confidence 77777777776665555555666677777776653 444322 2445666777777777655555666677777777777
Q ss_pred EcCh
Q 002663 842 HDMS 845 (895)
Q Consensus 842 ~~c~ 845 (895)
-.||
T Consensus 354 ~~Np 357 (498)
T KOG4237|consen 354 LSNP 357 (498)
T ss_pred ccCc
Confidence 6666
No 23
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.32 E-value=1.6e-13 Score=148.03 Aligned_cols=110 Identities=21% Similarity=0.012 Sum_probs=58.4
Q ss_pred cCCCcceEEEEeccCCCcch----hhhccCccccceeeccccCCCeEEEe-c----CCCcccceeeeccCCCce----ee
Q 002663 736 KLKNLIGLRLILSGLTEDPI----SILQALPNLLELMLHGGYDYELFHFE-A----GWFPKLRKLVLLNFEAVK----LV 802 (895)
Q Consensus 736 ~l~~L~~L~L~~~~l~~~~~----~~l~~l~~L~~L~L~~~~~~~~~~~~-~----~~~~~L~~L~l~~~~~l~----~l 802 (895)
.+++|+.|++++|.+..... ..+..+++|++|++++|.+....... . ...+.|++|++.+|.... .+
T Consensus 191 ~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l 270 (319)
T cd00116 191 ANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDL 270 (319)
T ss_pred hCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHH
Confidence 34566666666665543322 23345666666666666544210000 0 123677777777764321 11
Q ss_pred EEccCcccccceEEEccCCCCcc----cCcccccc-ccCcEEEEEcCh
Q 002663 803 IIEKGAMPDIRELWSGPCPLLME----IPIGIEHL-RNLELFTFHDMS 845 (895)
Q Consensus 803 ~~~~~~~~~L~~L~l~~c~~l~~----lp~~~~~l-~~L~~L~l~~c~ 845 (895)
......+++|+.+++++|..... +...+... +.|++|++.++|
T Consensus 271 ~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 271 AEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred HHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence 12233457788888888775532 23233334 677888877765
No 24
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.27 E-value=9e-13 Score=142.16 Aligned_cols=261 Identities=17% Similarity=0.084 Sum_probs=136.5
Q ss_pred hcccCCCceeeEEecCCCCCC-----cCccccccccCCCeEeecCCCccc-------ccccccCcCCCcEEEcCccccc-
Q 002663 533 KSCIANFKLMKVLDLEDSPIN-----YLPEGVGNLFNLHLLNARNTKLKI-------IPKSIGNLLSLEILVLARTFVS- 599 (895)
Q Consensus 533 ~~~~~~~~~L~~L~L~~~~~~-----~l~~~i~~l~~Lr~L~L~~~~l~~-------lp~~i~~l~~L~~L~L~~~~l~- 599 (895)
...+..+..|++|+++++.++ .++..+...+.|++|+++++.+.. ++..+.++++|+.|++++|.+.
T Consensus 16 ~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 95 (319)
T cd00116 16 TELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGP 95 (319)
T ss_pred HHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCCh
Confidence 345566677888888888774 355566677778888887766552 3344566778888888877655
Q ss_pred ccchhhhcccc---CCeEEeecccccccccccccccccccccccCcccceEEeeeecChHHHHHhhcc-ccCcEEEEEec
Q 002663 600 ELPEEIRNLKK---LRSLIVFHYKYITGSIIPTEVAAKIHRGFGSLRGLLVLSTIEADSQVLKELMML-RQLRMLSIRPQ 675 (895)
Q Consensus 600 ~lp~~i~~l~~---L~~L~l~~~~~~~~~~~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~l~~l-~~L~~L~l~~~ 675 (895)
..+..+..+.+ |++|++++|..... ....+ ...+..+ ++|+.|+++++
T Consensus 96 ~~~~~~~~l~~~~~L~~L~ls~~~~~~~------~~~~l----------------------~~~l~~~~~~L~~L~L~~n 147 (319)
T cd00116 96 DGCGVLESLLRSSSLQELKLNNNGLGDR------GLRLL----------------------AKGLKDLPPALEKLVLGRN 147 (319)
T ss_pred hHHHHHHHHhccCcccEEEeeCCccchH------HHHHH----------------------HHHHHhCCCCceEEEcCCC
Confidence 33444444444 88888877542110 00111 1223333 45555555554
Q ss_pred CCCcc---hHHHHhhccCCCCEEEEEecCccccc--ccccCcCCCcCccEEEEeccC------CCCCcccccCCCcceEE
Q 002663 676 NGNGR---DLCALIANLENVETLGVLMTSKEEIL--DLQSLSSPPQHLRYLSLRGNM------KKLPDWILKLKNLIGLR 744 (895)
Q Consensus 676 ~~~~~---~l~~~l~~l~~L~~L~l~~~~~~~~~--~l~~~~~~~~~L~~L~l~~~~------~~lp~~~~~l~~L~~L~ 744 (895)
..... .+...+..+++|+.|++.+|...... .+.......++|++|++++|. ..++..+..+++|+.|+
T Consensus 148 ~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ 227 (319)
T cd00116 148 RLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLN 227 (319)
T ss_pred cCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEe
Confidence 33321 22333344445555555555433210 010001111255666665542 12333445566777777
Q ss_pred EEeccCCCcchhhhc-----cCccccceeeccccCCCe----EEEecCCCcccceeeeccCCCcee----eEEccCcc-c
Q 002663 745 LILSGLTEDPISILQ-----ALPNLLELMLHGGYDYEL----FHFEAGWFPKLRKLVLLNFEAVKL----VIIEKGAM-P 810 (895)
Q Consensus 745 L~~~~l~~~~~~~l~-----~l~~L~~L~L~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~l~~----l~~~~~~~-~ 810 (895)
+++|.+....+..+. ..+.|+.|++++|.+... +......+++|++|++++|....+ +......+ +
T Consensus 228 ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~ 307 (319)
T cd00116 228 LGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGN 307 (319)
T ss_pred cCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCC
Confidence 777766543332222 136777777777655411 111223446777777777653322 11222334 6
Q ss_pred ccceEEEccCC
Q 002663 811 DIRELWSGPCP 821 (895)
Q Consensus 811 ~L~~L~l~~c~ 821 (895)
.|+.|++.+++
T Consensus 308 ~~~~~~~~~~~ 318 (319)
T cd00116 308 ELESLWVKDDS 318 (319)
T ss_pred chhhcccCCCC
Confidence 77777777665
No 25
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.15 E-value=9.5e-13 Score=132.49 Aligned_cols=122 Identities=23% Similarity=0.353 Sum_probs=93.2
Q ss_pred eEEEEEccCCCCccchhcccCCCceeeEEecCCCCCCcC-ccccccccCCCeEeecC-CCccccccc-ccCcCCCcEEEc
Q 002663 517 RSVILFNVDKLPDSFMKSCIANFKLMKVLDLEDSPINYL-PEGVGNLFNLHLLNARN-TKLKIIPKS-IGNLLSLEILVL 593 (895)
Q Consensus 517 r~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l-~~~i~~l~~Lr~L~L~~-~~l~~lp~~-i~~l~~L~~L~L 593 (895)
..+.+..+.. ..+++..|+.+++||.|||+.|.|+.+ |..|..++.|-.|-+.+ |+|+.+|.. ++.|..|+-|.+
T Consensus 70 veirLdqN~I--~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 70 VEIRLDQNQI--SSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred eEEEeccCCc--ccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 3444444433 557788999999999999999999965 88999999988887766 999999964 788999999999
Q ss_pred Ccccccccch-hhhccccCCeEEeecccccccccccccccccccc-cccCcccceEEeee
Q 002663 594 ARTFVSELPE-EIRNLKKLRSLIVFHYKYITGSIIPTEVAAKIHR-GFGSLRGLLVLSTI 651 (895)
Q Consensus 594 ~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~p~-~i~~l~~L~~L~~~ 651 (895)
.-|.+..++. .+..|++|..|.+..+. ...++. .+..+..++++.+.
T Consensus 148 Nan~i~Cir~~al~dL~~l~lLslyDn~-----------~q~i~~~tf~~l~~i~tlhlA 196 (498)
T KOG4237|consen 148 NANHINCIRQDALRDLPSLSLLSLYDNK-----------IQSICKGTFQGLAAIKTLHLA 196 (498)
T ss_pred ChhhhcchhHHHHHHhhhcchhcccchh-----------hhhhccccccchhccchHhhh
Confidence 8887776655 57799999999998854 333443 35556666665543
No 26
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.99 E-value=5.8e-12 Score=128.11 Aligned_cols=151 Identities=21% Similarity=0.198 Sum_probs=98.1
Q ss_pred cCccEEEEeccCC--CCC--cccccCCCcceEEEEecc-CCCcchhhhc-cCccccceeeccccCCCe--EEEecCCCcc
Q 002663 716 QHLRYLSLRGNMK--KLP--DWILKLKNLIGLRLILSG-LTEDPISILQ-ALPNLLELMLHGGYDYEL--FHFEAGWFPK 787 (895)
Q Consensus 716 ~~L~~L~l~~~~~--~lp--~~~~~l~~L~~L~L~~~~-l~~~~~~~l~-~l~~L~~L~L~~~~~~~~--~~~~~~~~~~ 787 (895)
..|+.|+.+++.. ..+ ....+.++|+.|.++.|+ ++...+..++ +++.|+.+++.++..+.. +.....++|.
T Consensus 294 ~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~ 373 (483)
T KOG4341|consen 294 HALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPR 373 (483)
T ss_pred hHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCch
Confidence 3556666555421 111 112456777777777774 4444455555 677888888876654322 2233457889
Q ss_pred cceeeeccCCCceee-----EEccCcccccceEEEccCCCCcc-cCccccccccCcEEEEEcChhhhhcccccceeEEec
Q 002663 788 LRKLVLLNFEAVKLV-----IIEKGAMPDIRELWSGPCPLLME-IPIGIEHLRNLELFTFHDMSKQVCCMTKNEKWEVTE 861 (895)
Q Consensus 788 L~~L~l~~~~~l~~l-----~~~~~~~~~L~~L~l~~c~~l~~-lp~~~~~l~~L~~L~l~~c~~~~~~i~~~~~~~i~~ 861 (895)
|+.|.+++|..+++- .....++..|+.+.+.+|+.... ....+..+++|+.+++.+|.. +..+....+-.
T Consensus 374 lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~----vtk~~i~~~~~ 449 (483)
T KOG4341|consen 374 LRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQD----VTKEAISRFAT 449 (483)
T ss_pred hccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhh----hhhhhhHHHHh
Confidence 999999998777664 33345788899999999997652 344677899999999999983 33333233337
Q ss_pred cCCcEEEEE
Q 002663 862 HIPDVRVTY 870 (895)
Q Consensus 862 ~~p~l~~l~ 870 (895)
|+|++++.-
T Consensus 450 ~lp~i~v~a 458 (483)
T KOG4341|consen 450 HLPNIKVHA 458 (483)
T ss_pred hCccceehh
Confidence 788887663
No 27
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=7.9e-10 Score=113.45 Aligned_cols=182 Identities=18% Similarity=0.107 Sum_probs=104.1
Q ss_pred ccccCCCeEeecCCCcccccc--cccCcCCCcEEEcCccccc---ccchhhhccccCCeEEeeccccccccccccccccc
Q 002663 560 GNLFNLHLLNARNTKLKIIPK--SIGNLLSLEILVLARTFVS---ELPEEIRNLKKLRSLIVFHYKYITGSIIPTEVAAK 634 (895)
Q Consensus 560 ~~l~~Lr~L~L~~~~l~~lp~--~i~~l~~L~~L~L~~~~l~---~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 634 (895)
+++++|+...|.++.+...+. ....|++++.|||++|-+. .+-..+.+||+|+.|+++.|......
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~--------- 188 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFI--------- 188 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCc---------
Confidence 456667777777776665552 4556777777777777433 33334557888888888776432110
Q ss_pred ccccccCcccceEEeeeecChHHHHHhhccccCcEEEEEecCCCcchHHHHhhccCCCCEEEEEecCcccccccccCcCC
Q 002663 635 IHRGFGSLRGLLVLSTIEADSQVLKELMMLRQLRMLSIRPQNGNGRDLCALIANLENVETLGVLMTSKEEILDLQSLSSP 714 (895)
Q Consensus 635 ~p~~i~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~ 714 (895)
++. . -..++.|+.|.+..++++...+...+..+|+|+.|.+..|...... ......
T Consensus 189 -----~s~---~--------------~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~--~~~~~i 244 (505)
T KOG3207|consen 189 -----SSN---T--------------TLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIK--ATSTKI 244 (505)
T ss_pred -----ccc---c--------------hhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhccccccee--cchhhh
Confidence 000 0 0134566777777777777777777778888888888877421111 111122
Q ss_pred CcCccEEEEeccC-CCCC--cccccCCCcceEEEEeccCCCcchhh------hccCccccceeeccccC
Q 002663 715 PQHLRYLSLRGNM-KKLP--DWILKLKNLIGLRLILSGLTEDPISI------LQALPNLLELMLHGGYD 774 (895)
Q Consensus 715 ~~~L~~L~l~~~~-~~lp--~~~~~l~~L~~L~L~~~~l~~~~~~~------l~~l~~L~~L~L~~~~~ 774 (895)
++.|+.|+|++|. ..++ .-.+.++.|..|+++.|.+.....+. ...+|+|++|++..|.+
T Consensus 245 ~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I 313 (505)
T KOG3207|consen 245 LQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNI 313 (505)
T ss_pred hhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCcc
Confidence 3367777777663 3333 33556677777777777654432211 13455555555555544
No 28
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=2.3e-10 Score=111.25 Aligned_cols=139 Identities=19% Similarity=0.136 Sum_probs=76.8
Q ss_pred HHHhhccccCcEEEEEe-cCCCcchHHHHhhccCCCCEEEEEecCcccccccccCcCCCcCccEEEEeccCCC-----CC
Q 002663 658 LKELMMLRQLRMLSIRP-QNGNGRDLCALIANLENVETLGVLMTSKEEILDLQSLSSPPQHLRYLSLRGNMKK-----LP 731 (895)
Q Consensus 658 ~~~l~~l~~L~~L~l~~-~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~-----lp 731 (895)
...+.+-.+|+.|+++. +.++...+.-.+.+++.|..|++++|.......-.....-.++|..|+|+|+... +.
T Consensus 227 ~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~ 306 (419)
T KOG2120|consen 227 VNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLS 306 (419)
T ss_pred HHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHH
Confidence 34455556666666666 4455555556667777778888877765433211111222237788888886422 22
Q ss_pred cccccCCCcceEEEEecc-CCCcchhhhccCccccceeeccccCCC-eEEEecCCCcccceeeeccC
Q 002663 732 DWILKLKNLIGLRLILSG-LTEDPISILQALPNLLELMLHGGYDYE-LFHFEAGWFPKLRKLVLLNF 796 (895)
Q Consensus 732 ~~~~~l~~L~~L~L~~~~-l~~~~~~~l~~l~~L~~L~L~~~~~~~-~~~~~~~~~~~L~~L~l~~~ 796 (895)
.....+++|..|+|++|. ++......+-+++.|++|.|+.|+... .........|+|.+|++.+|
T Consensus 307 tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 307 TLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred HHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence 223456777777777764 444445556666666666666664331 11222344455555555544
No 29
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=1.4e-09 Score=111.70 Aligned_cols=204 Identities=16% Similarity=0.108 Sum_probs=124.2
Q ss_pred ccCcccceEEeeeecChHHH---HHhhccccCcEEEEEecCC-CcchHHHHhhccCCCCEEEEEecCcccccccccCcCC
Q 002663 639 FGSLRGLLVLSTIEADSQVL---KELMMLRQLRMLSIRPQNG-NGRDLCALIANLENVETLGVLMTSKEEILDLQSLSSP 714 (895)
Q Consensus 639 i~~l~~L~~L~~~~~~~~~~---~~l~~l~~L~~L~l~~~~~-~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~ 714 (895)
=.++.+|+...+.++....+ .....|++++.|+++.|-+ ....+......+|+|+.|+++.|......+- .....
T Consensus 117 Qsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s-~~~~~ 195 (505)
T KOG3207|consen 117 QSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISS-NTTLL 195 (505)
T ss_pred hhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccc-cchhh
Confidence 34677777777766643332 3567788888888888533 3345667777888888888888765432210 11112
Q ss_pred CcCccEEEEeccCC---CCCcccccCCCcceEEEEeccCCCcchhhhccCccccceeeccccCCCeE-EEecCCCcccce
Q 002663 715 PQHLRYLSLRGNMK---KLPDWILKLKNLIGLRLILSGLTEDPISILQALPNLLELMLHGGYDYELF-HFEAGWFPKLRK 790 (895)
Q Consensus 715 ~~~L~~L~l~~~~~---~lp~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~-~~~~~~~~~L~~ 790 (895)
.++|+.|.|++|.- ..-.....+|+|..|+|..|............+..|+.|+|++|.+...- ....+.||.|+.
T Consensus 196 l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~ 275 (505)
T KOG3207|consen 196 LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQ 275 (505)
T ss_pred hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhh
Confidence 33788888887742 12222345788888888877411111112234567888888877655432 233567888888
Q ss_pred eeeccCCCceeeEEc-------cCcccccceEEEccCCCCcccC--ccccccccCcEEEEEcCh
Q 002663 791 LVLLNFEAVKLVIIE-------KGAMPDIRELWSGPCPLLMEIP--IGIEHLRNLELFTFHDMS 845 (895)
Q Consensus 791 L~l~~~~~l~~l~~~-------~~~~~~L~~L~l~~c~~l~~lp--~~~~~l~~L~~L~l~~c~ 845 (895)
|+++.| .+.++... ...+|+|++|++..|+.. .++ ..+..+++|+.|.+..++
T Consensus 276 Lnls~t-gi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~-~w~sl~~l~~l~nlk~l~~~~n~ 337 (505)
T KOG3207|consen 276 LNLSST-GIASIAEPDVESLDKTHTFPKLEYLNISENNIR-DWRSLNHLRTLENLKHLRITLNY 337 (505)
T ss_pred hhcccc-CcchhcCCCccchhhhcccccceeeecccCccc-cccccchhhccchhhhhhccccc
Confidence 888776 45554221 235788888888888752 233 245566777777777765
No 30
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.68 E-value=1.7e-09 Score=108.06 Aligned_cols=250 Identities=18% Similarity=0.119 Sum_probs=129.6
Q ss_pred cccCCCceeeEEecCCCCCC-----cCccccccccCCCeEeecC--CC--cccccccc-------cCcCCCcEEEcCccc
Q 002663 534 SCIANFKLMKVLDLEDSPIN-----YLPEGVGNLFNLHLLNARN--TK--LKIIPKSI-------GNLLSLEILVLARTF 597 (895)
Q Consensus 534 ~~~~~~~~L~~L~L~~~~~~-----~l~~~i~~l~~Lr~L~L~~--~~--l~~lp~~i-------~~l~~L~~L~L~~~~ 597 (895)
.....+..+..|+|++|.+. .+.+.+.+.++|+.-+|+. +. ..++|+.+ -..++|++||||.|.
T Consensus 24 ~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA 103 (382)
T KOG1909|consen 24 EELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA 103 (382)
T ss_pred HHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc
Confidence 34566778999999999876 4556677788899999886 22 22566543 345688888888885
Q ss_pred cc-----ccchhhhccccCCeEEeecccccccccccccccccccccccCcccceEEeeeecChHHHHHhhccccCcEEEE
Q 002663 598 VS-----ELPEEIRNLKKLRSLIVFHYKYITGSIIPTEVAAKIHRGFGSLRGLLVLSTIEADSQVLKELMMLRQLRMLSI 672 (895)
Q Consensus 598 l~-----~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l 672 (895)
+. .+-.-+.++..|++|.|.+|..-.. -+..+... |+.| ......+.-++|+.+..
T Consensus 104 ~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~------ag~~l~~a------l~~l-------~~~kk~~~~~~Lrv~i~ 164 (382)
T KOG1909|consen 104 FGPKGIRGLEELLSSCTDLEELYLNNCGLGPE------AGGRLGRA------LFEL-------AVNKKAASKPKLRVFIC 164 (382)
T ss_pred cCccchHHHHHHHHhccCHHHHhhhcCCCChh------HHHHHHHH------HHHH-------HHHhccCCCcceEEEEe
Confidence 44 2222355677788888877632110 00000000 0000 01122344566777777
Q ss_pred EecCC---CcchHHHHhhccCCCCEEEEEecCcccccccccCcCCCcCccEEEEeccCCCCCcccccCCCcceEEEEecc
Q 002663 673 RPQNG---NGRDLCALIANLENVETLGVLMTSKEEILDLQSLSSPPQHLRYLSLRGNMKKLPDWILKLKNLIGLRLILSG 749 (895)
Q Consensus 673 ~~~~~---~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~lp~~~~~l~~L~~L~L~~~~ 749 (895)
..|.. ....+...+...+.|+.+.+..|++..... ..+-..+..+++|+.|+|.+|.
T Consensus 165 ~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~--------------------~al~eal~~~~~LevLdl~DNt 224 (382)
T KOG1909|consen 165 GRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGV--------------------TALAEALEHCPHLEVLDLRDNT 224 (382)
T ss_pred eccccccccHHHHHHHHHhccccceEEEecccccCchh--------------------HHHHHHHHhCCcceeeecccch
Confidence 66532 223455666666777777777665432111 0011123334444444444444
Q ss_pred CCCcc----hhhhccCccccceeeccccCCCeEEE-----ecCCCcccceeeeccCCCcee----eEEccCcccccceEE
Q 002663 750 LTEDP----ISILQALPNLLELMLHGGYDYELFHF-----EAGWFPKLRKLVLLNFEAVKL----VIIEKGAMPDIRELW 816 (895)
Q Consensus 750 l~~~~----~~~l~~l~~L~~L~L~~~~~~~~~~~-----~~~~~~~L~~L~l~~~~~l~~----l~~~~~~~~~L~~L~ 816 (895)
++... ...+..+|+|+.|++++|.+...-.. ....+|+|+.|.+.+|....+ +.......|.|+.|+
T Consensus 225 ft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLn 304 (382)
T KOG1909|consen 225 FTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLN 304 (382)
T ss_pred hhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhc
Confidence 33221 12233344444555544433221110 112356666666666643332 112233467777777
Q ss_pred EccCCC
Q 002663 817 SGPCPL 822 (895)
Q Consensus 817 l~~c~~ 822 (895)
|++|..
T Consensus 305 LngN~l 310 (382)
T KOG1909|consen 305 LNGNRL 310 (382)
T ss_pred CCcccc
Confidence 777764
No 31
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.68 E-value=1.9e-08 Score=94.78 Aligned_cols=82 Identities=24% Similarity=0.370 Sum_probs=26.6
Q ss_pred CCCceeeEEecCCCCCCcCccccc-cccCCCeEeecCCCcccccccccCcCCCcEEEcCcccccccchhhh-ccccCCeE
Q 002663 537 ANFKLMKVLDLEDSPINYLPEGVG-NLFNLHLLNARNTKLKIIPKSIGNLLSLEILVLARTFVSELPEEIR-NLKKLRSL 614 (895)
Q Consensus 537 ~~~~~L~~L~L~~~~~~~l~~~i~-~l~~Lr~L~L~~~~l~~lp~~i~~l~~L~~L~L~~~~l~~lp~~i~-~l~~L~~L 614 (895)
.+...++.|+|+++.|+.+. .++ .+.+|+.|++++|.|+.++ .+..+++|++|++++|.++.++..+. .+++|++|
T Consensus 16 ~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L 93 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQEL 93 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH-TT--EE
T ss_pred cccccccccccccccccccc-chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCEE
Confidence 34456788888888887663 455 5778888888888888876 47778888888888888888866554 68888888
Q ss_pred Eeeccc
Q 002663 615 IVFHYK 620 (895)
Q Consensus 615 ~l~~~~ 620 (895)
++++|.
T Consensus 94 ~L~~N~ 99 (175)
T PF14580_consen 94 YLSNNK 99 (175)
T ss_dssp E-TTS-
T ss_pred ECcCCc
Confidence 887753
No 32
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=7.5e-10 Score=107.69 Aligned_cols=164 Identities=23% Similarity=0.134 Sum_probs=99.8
Q ss_pred HHhhccccCcEEEEEecCCCcchHHHHhhccCCCCEEEEEecCcccccccccCcCCCcCccEEEEeccCC---CCCcccc
Q 002663 659 KELMMLRQLRMLSIRPQNGNGRDLCALIANLENVETLGVLMTSKEEILDLQSLSSPPQHLRYLSLRGNMK---KLPDWIL 735 (895)
Q Consensus 659 ~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~---~lp~~~~ 735 (895)
..++.|.+|+.|.+.+....+ .+...+..-.+|+.|+++.|+......+..+...++.|..|+|+.|.. .....+.
T Consensus 204 ~iLs~C~kLk~lSlEg~~LdD-~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~ 282 (419)
T KOG2120|consen 204 GILSQCSKLKNLSLEGLRLDD-PIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVA 282 (419)
T ss_pred HHHHHHHhhhhccccccccCc-HHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHh
Confidence 346778888888888766554 577778888888888888877655545555566666788888877742 1222222
Q ss_pred cC-CCcceEEEEecc--CCCcchhhhc-cCccccceeeccccCCCe-EEEecCCCcccceeeeccCCCcee-eEEccCcc
Q 002663 736 KL-KNLIGLRLILSG--LTEDPISILQ-ALPNLLELMLHGGYDYEL-FHFEAGWFPKLRKLVLLNFEAVKL-VIIEKGAM 809 (895)
Q Consensus 736 ~l-~~L~~L~L~~~~--l~~~~~~~l~-~l~~L~~L~L~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~l~~-l~~~~~~~ 809 (895)
+. ++|+.|+|++|. +...+...+. .+|+|.+|+|+.|..... ....+-.|+.|++|+++.|..+.. .-..+..+
T Consensus 283 hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~ 362 (419)
T KOG2120|consen 283 HISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSK 362 (419)
T ss_pred hhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccC
Confidence 32 677777777773 2223343333 577777777775543221 111233566777777777754332 12345566
Q ss_pred cccceEEEccCCCC
Q 002663 810 PDIRELWSGPCPLL 823 (895)
Q Consensus 810 ~~L~~L~l~~c~~l 823 (895)
|+|.+|++.+|-.-
T Consensus 363 psl~yLdv~g~vsd 376 (419)
T KOG2120|consen 363 PSLVYLDVFGCVSD 376 (419)
T ss_pred cceEEEEeccccCc
Confidence 77777777766533
No 33
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.67 E-value=1.1e-08 Score=113.63 Aligned_cols=85 Identities=29% Similarity=0.423 Sum_probs=75.3
Q ss_pred cCCCceeeEEecCCCCCCcCcccccccc-CCCeEeecCCCcccccccccCcCCCcEEEcCcccccccchhhhccccCCeE
Q 002663 536 IANFKLMKVLDLEDSPINYLPEGVGNLF-NLHLLNARNTKLKIIPKSIGNLLSLEILVLARTFVSELPEEIRNLKKLRSL 614 (895)
Q Consensus 536 ~~~~~~L~~L~L~~~~~~~l~~~i~~l~-~Lr~L~L~~~~l~~lp~~i~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L 614 (895)
+..+..+..|++.++.+..++.....+. +|++|+++++.+..+|..++.+++|+.|++++|.+..+|...+.+++|+.|
T Consensus 112 ~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L 191 (394)
T COG4886 112 LLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNL 191 (394)
T ss_pred hhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhhe
Confidence 3455789999999999999998888885 999999999999999878999999999999999999999887799999999
Q ss_pred Eeeccc
Q 002663 615 IVFHYK 620 (895)
Q Consensus 615 ~l~~~~ 620 (895)
+++++.
T Consensus 192 ~ls~N~ 197 (394)
T COG4886 192 DLSGNK 197 (394)
T ss_pred eccCCc
Confidence 999853
No 34
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.66 E-value=1.4e-09 Score=108.64 Aligned_cols=188 Identities=17% Similarity=0.139 Sum_probs=132.0
Q ss_pred HHHhhccccCcEEEEEecCCCc---chHHHHhhccCCCCEEEEEecCcccccc-----------cccCcCCCcCccEEEE
Q 002663 658 LKELMMLRQLRMLSIRPQNGNG---RDLCALIANLENVETLGVLMTSKEEILD-----------LQSLSSPPQHLRYLSL 723 (895)
Q Consensus 658 ~~~l~~l~~L~~L~l~~~~~~~---~~l~~~l~~l~~L~~L~l~~~~~~~~~~-----------l~~~~~~~~~L~~L~l 723 (895)
...|..+++|++|++++|.+.. ..+...+.++..|++|.+.+|+...... .....+.++.|+.+..
T Consensus 85 ~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~ 164 (382)
T KOG1909|consen 85 SKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFIC 164 (382)
T ss_pred HHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEe
Confidence 3456677789999998875433 3456777788899999999997653221 1223345559999999
Q ss_pred eccC-CC-----CCcccccCCCcceEEEEeccCCCcch----hhhccCccccceeeccccCCCe----EEEecCCCcccc
Q 002663 724 RGNM-KK-----LPDWILKLKNLIGLRLILSGLTEDPI----SILQALPNLLELMLHGGYDYEL----FHFEAGWFPKLR 789 (895)
Q Consensus 724 ~~~~-~~-----lp~~~~~l~~L~~L~L~~~~l~~~~~----~~l~~l~~L~~L~L~~~~~~~~----~~~~~~~~~~L~ 789 (895)
..|. .. +-..+...+.|+.+.+..|.+..... ..+..+|+|+.|+|..|.++.. +......+|.|+
T Consensus 165 ~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~ 244 (382)
T KOG1909|consen 165 GRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLR 244 (382)
T ss_pred eccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchhe
Confidence 9884 22 23346667899999999998765433 4567899999999998877643 223345788999
Q ss_pred eeeeccCCCceeeE-----EccCcccccceEEEccCCCCcc----cCccccccccCcEEEEEcCh
Q 002663 790 KLVLLNFEAVKLVI-----IEKGAMPDIRELWSGPCPLLME----IPIGIEHLRNLELFTFHDMS 845 (895)
Q Consensus 790 ~L~l~~~~~l~~l~-----~~~~~~~~L~~L~l~~c~~l~~----lp~~~~~l~~L~~L~l~~c~ 845 (895)
.|++++|..-..-. .-....|+|+.|.+.+|..... +...+...+.|..|+|++|.
T Consensus 245 El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 245 ELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred eecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 99999994322211 0123489999999999986542 23345668999999999995
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.64 E-value=3.7e-09 Score=102.92 Aligned_cols=41 Identities=10% Similarity=0.120 Sum_probs=20.1
Q ss_pred ccccccCcCCCcEEEcCcccccccchhhhccccCCeEEeec
Q 002663 578 IPKSIGNLLSLEILVLARTFVSELPEEIRNLKKLRSLIVFH 618 (895)
Q Consensus 578 lp~~i~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~ 618 (895)
+|-.+.-+.+|.++.++.|.-..+-.-...-|-|+++.+.+
T Consensus 206 l~f~l~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~ 246 (490)
T KOG1259|consen 206 LSFNLNAFRNLKTLKFSALSTENIVDIELLKPTLQTICVHN 246 (490)
T ss_pred cccchHHhhhhheeeeeccchhheeceeecCchhheeeeec
Confidence 34444455566666666664433332222334555555543
No 36
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.61 E-value=1.9e-09 Score=114.08 Aligned_cols=79 Identities=30% Similarity=0.455 Sum_probs=37.0
Q ss_pred CceeeEEecCCCCCCcCccccccccCCCeEeecCCCcccccccccCcCCCcEEEcCcccccccchhhhccccCCeEEeec
Q 002663 539 FKLMKVLDLEDSPINYLPEGVGNLFNLHLLNARNTKLKIIPKSIGNLLSLEILVLARTFVSELPEEIRNLKKLRSLIVFH 618 (895)
Q Consensus 539 ~~~L~~L~L~~~~~~~l~~~i~~l~~Lr~L~L~~~~l~~lp~~i~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~ 618 (895)
|..|..|.|+.|.+..+|..++++..|.||+|+.|.+..+|..++.| -|+.|-+++|+++.+|..++.++.|.+|+.+.
T Consensus 97 f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~l-pLkvli~sNNkl~~lp~~ig~~~tl~~ld~s~ 175 (722)
T KOG0532|consen 97 FVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDL-PLKVLIVSNNKLTSLPEEIGLLPTLAHLDVSK 175 (722)
T ss_pred HHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcC-cceeEEEecCccccCCcccccchhHHHhhhhh
Confidence 33444444444444444444444444444444444444444444332 24444444444444444444444444444444
No 37
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.61 E-value=9.2e-09 Score=100.17 Aligned_cols=131 Identities=21% Similarity=0.233 Sum_probs=90.5
Q ss_pred CCCceeeEEecCCCCCCcCccccccccCCCeEeecCCCcccccccccCcCCCcEEEcCcccccccchhhhccccCCeEEe
Q 002663 537 ANFKLMKVLDLEDSPINYLPEGVGNLFNLHLLNARNTKLKIIPKSIGNLLSLEILVLARTFVSELPEEIRNLKKLRSLIV 616 (895)
Q Consensus 537 ~~~~~L~~L~L~~~~~~~l~~~i~~l~~Lr~L~L~~~~l~~lp~~i~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l 616 (895)
...+.|..|||++|.|+.+-+++.-.|.+|.|++++|.|..+-. +..|++|+.|||++|.+.++-..-.+|.|.+.|.+
T Consensus 281 dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 281 DTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKL 359 (490)
T ss_pred chHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccchhHhhhhhHhhhcCEeeeeh
Confidence 44567888888888888888888888888888888888887754 77788888888888877776543446777777777
Q ss_pred ecccccccccccccccccccccccCcccceEEeeeecChHHHHHhhccccCcEEEEEecCCCcchHHHHhhccCCCCEEE
Q 002663 617 FHYKYITGSIIPTEVAAKIHRGFGSLRGLLVLSTIEADSQVLKELMMLRQLRMLSIRPQNGNGRDLCALIANLENVETLG 696 (895)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~l~~L~~L~ 696 (895)
++|. ...++.+.++-+|..|++++|.+....-...++++|.|+++.
T Consensus 360 a~N~----------------------------------iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~ 405 (490)
T KOG1259|consen 360 AQNK----------------------------------IETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLR 405 (490)
T ss_pred hhhh----------------------------------HhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHh
Confidence 7652 222334555566666677665544333345566666666666
Q ss_pred EEecCc
Q 002663 697 VLMTSK 702 (895)
Q Consensus 697 l~~~~~ 702 (895)
+.+|..
T Consensus 406 L~~NPl 411 (490)
T KOG1259|consen 406 LTGNPL 411 (490)
T ss_pred hcCCCc
Confidence 666643
No 38
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.51 E-value=3.8e-09 Score=111.88 Aligned_cols=151 Identities=25% Similarity=0.358 Sum_probs=114.8
Q ss_pred CcceeEEEEEccCCCCccchhcccCCCceeeEEecCCCCCCcCccccccccCCCeEeecCCCcccccccccCcCCCcEEE
Q 002663 513 DWKVRSVILFNVDKLPDSFMKSCIANFKLMKVLDLEDSPINYLPEGVGNLFNLHLLNARNTKLKIIPKSIGNLLSLEILV 592 (895)
Q Consensus 513 ~~~lr~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~i~~l~~Lr~L~L~~~~l~~lp~~i~~l~~L~~L~ 592 (895)
+-.+.+++++.+.. ...+..+.++..|.+|+|+.|++..+|..++.|+ |+.|-+++|+++.+|+.++.+..|..||
T Consensus 97 f~~Le~liLy~n~~---r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld 172 (722)
T KOG0532|consen 97 FVSLESLILYHNCI---RTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLD 172 (722)
T ss_pred HHHHHHHHHHhccc---eecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhh
Confidence 33445555544432 2334567788999999999999999999888775 9999999999999999999899999999
Q ss_pred cCcccccccchhhhccccCCeEEeecccccccccccccccccccccccCcccceEEeeeecC-hHHHHHhhccccCcEEE
Q 002663 593 LARTFVSELPEEIRNLKKLRSLIVFHYKYITGSIIPTEVAAKIHRGFGSLRGLLVLSTIEAD-SQVLKELMMLRQLRMLS 671 (895)
Q Consensus 593 L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~p~~i~~l~~L~~L~~~~~~-~~~~~~l~~l~~L~~L~ 671 (895)
.+.|.+..+|+.++.+.+|+.|++..|. ...+|..++.| .|..|++..+. ...+..+.+|+.|+.|-
T Consensus 173 ~s~nei~slpsql~~l~slr~l~vrRn~-----------l~~lp~El~~L-pLi~lDfScNkis~iPv~fr~m~~Lq~l~ 240 (722)
T KOG0532|consen 173 VSKNEIQSLPSQLGYLTSLRDLNVRRNH-----------LEDLPEELCSL-PLIRLDFSCNKISYLPVDFRKMRHLQVLQ 240 (722)
T ss_pred hhhhhhhhchHHhhhHHHHHHHHHhhhh-----------hhhCCHHHhCC-ceeeeecccCceeecchhhhhhhhheeee
Confidence 9999999999999999999999998853 55677666643 35566655443 23455677777777777
Q ss_pred EEecCCCc
Q 002663 672 IRPQNGNG 679 (895)
Q Consensus 672 l~~~~~~~ 679 (895)
+.+|.+..
T Consensus 241 LenNPLqS 248 (722)
T KOG0532|consen 241 LENNPLQS 248 (722)
T ss_pred eccCCCCC
Confidence 77765543
No 39
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.50 E-value=3.1e-09 Score=108.59 Aligned_cols=270 Identities=19% Similarity=0.148 Sum_probs=175.1
Q ss_pred CCCeEeecCCCc---ccccccccCcCCCcEEEcCcc-ccccc-chhhh-ccccCCeEEeecccccccccccccccccccc
Q 002663 564 NLHLLNARNTKL---KIIPKSIGNLLSLEILVLART-FVSEL-PEEIR-NLKKLRSLIVFHYKYITGSIIPTEVAAKIHR 637 (895)
Q Consensus 564 ~Lr~L~L~~~~l---~~lp~~i~~l~~L~~L~L~~~-~l~~l-p~~i~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~p~ 637 (895)
.||.|.++|+.- ..+-....++++.++|.+.+| +++.- -.++. .+++|++|++..|..+++.
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~------------ 206 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDV------------ 206 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHH------------
Confidence 478888887542 233333457788888888888 55422 12233 6788888888776544321
Q ss_pred cccCcccceEEeeeecChHHHH-HhhccccCcEEEEEec-CCCcchHHHHhhccCCCCEEEEEecCcccccccccCcCCC
Q 002663 638 GFGSLRGLLVLSTIEADSQVLK-ELMMLRQLRMLSIRPQ-NGNGRDLCALIANLENVETLGVLMTSKEEILDLQSLSSPP 715 (895)
Q Consensus 638 ~i~~l~~L~~L~~~~~~~~~~~-~l~~l~~L~~L~l~~~-~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~ 715 (895)
.+. .-..+++|.+|+++++ .+.+..+......+++++.+...+|...+...+......+
T Consensus 207 -------------------~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~ 267 (483)
T KOG4341|consen 207 -------------------SLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYC 267 (483)
T ss_pred -------------------HHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccC
Confidence 122 2346788899999883 4444556677778888888888888665554444444444
Q ss_pred cCccEEEEeccC--CCCCcc--cccCCCcceEEEEecc-CCCcchhhhc-cCccccceeeccccCCCe--EEEecCCCcc
Q 002663 716 QHLRYLSLRGNM--KKLPDW--ILKLKNLIGLRLILSG-LTEDPISILQ-ALPNLLELMLHGGYDYEL--FHFEAGWFPK 787 (895)
Q Consensus 716 ~~L~~L~l~~~~--~~lp~~--~~~l~~L~~L~L~~~~-l~~~~~~~l~-~l~~L~~L~L~~~~~~~~--~~~~~~~~~~ 787 (895)
..+..+++..+. ....-| -..+..|+.|+.++|. ++......++ +.++|+.|-+.+|..... +.....+.+.
T Consensus 268 ~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~ 347 (483)
T KOG4341|consen 268 LEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPH 347 (483)
T ss_pred hHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChh
Confidence 456667665652 111111 2346889999999985 3334444554 789999999998864332 2233457889
Q ss_pred cceeeeccCCCceee--EEccCcccccceEEEccCCCCccc-----CccccccccCcEEEEEcChhhhhcccccceeEEe
Q 002663 788 LRKLVLLNFEAVKLV--IIEKGAMPDIRELWSGPCPLLMEI-----PIGIEHLRNLELFTFHDMSKQVCCMTKNEKWEVT 860 (895)
Q Consensus 788 L~~L~l~~~~~l~~l--~~~~~~~~~L~~L~l~~c~~l~~l-----p~~~~~l~~L~~L~l~~c~~~~~~i~~~~~~~i~ 860 (895)
|+.|++..|-.+.+- .....++|.|+.|.++.|...+.- ..+-.....|+.+.+++|| .+++......
T Consensus 348 Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p----~i~d~~Le~l- 422 (483)
T KOG4341|consen 348 LERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCP----LITDATLEHL- 422 (483)
T ss_pred hhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCC----CchHHHHHHH-
Confidence 999999988655442 223457999999999999865532 3344567889999999999 4444333344
Q ss_pred ccCCcEEEE
Q 002663 861 EHIPDVRVT 869 (895)
Q Consensus 861 ~~~p~l~~l 869 (895)
.++++|+-+
T Consensus 423 ~~c~~Leri 431 (483)
T KOG4341|consen 423 SICRNLERI 431 (483)
T ss_pred hhCccccee
Confidence 667777776
No 40
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.44 E-value=1.6e-05 Score=88.13 Aligned_cols=287 Identities=13% Similarity=0.102 Sum_probs=147.0
Q ss_pred CCCceeechhhHHHHHHHHhcC--CCCceEEEEEcCCCchhhHHHHHHhccccccCCCCceEEEEeCCCCCHHHHHHHHH
Q 002663 169 EDDEVVGIESIKDKLIDLMVNG--RSKSSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRTII 246 (895)
Q Consensus 169 ~~~~~vGr~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~l~~~i~ 246 (895)
.++.++||+++++++...+... +.....+.|+|++|+||||+++.++++.......-..+++++....+...++..++
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~ 107 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIA 107 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHH
Confidence 4567999999999999998543 23345678999999999999999998532222123356777776677788888888
Q ss_pred HHHHhccCCCCCCCCccC----------cC-----ccccHHHHH---------Hhc--CCCCCCcE--EEEEcCchhhhh
Q 002663 247 KEFHRLSKHGRDGPDRHA----------EG-----PLEGQKDVE---------HAL--LDNKKCSR--IIVTTRHMNVAK 298 (895)
Q Consensus 247 ~~l~~~~~~~~~~~~~~~----------~~-----~L~~~~~l~---------~~l--~~~~~gs~--iivTTR~~~v~~ 298 (895)
.++............... .. .+++.+.+. ..+ .....+++ +|.++.+..+..
T Consensus 108 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~~~~~~~ 187 (394)
T PRK00411 108 RQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGISSDLTFLY 187 (394)
T ss_pred HHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEECCcchhh
Confidence 887642111000000000 00 022333221 111 11112333 566666654433
Q ss_pred hhc----cCCCcceeeccCCChhhHHHHHHHhhcCCCCCCCCchhHHHHHHHHHHh---hhcc--------------C--
Q 002663 299 FCK----SSSSVRIHELETLPPDEAWKLFCRKAFGPSSGGCCPSELKEFFIVALGG---LLST--------------K-- 355 (895)
Q Consensus 299 ~~~----~~~~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~l~~~ai~~~g~---~l~~--------------~-- 355 (895)
... .......+.+++++.++..+++..++-..-.+....++..+......++ .++. .
T Consensus 188 ~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~~ 267 (394)
T PRK00411 188 ILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREGS 267 (394)
T ss_pred hcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCC
Confidence 221 1111246789999999999999887632111111222222221111111 0100 0
Q ss_pred C-CCHHHHHhhhhcCCChHHHHHHHhcccCCCChhhhhHhcccccCC--CCcccchhhHHHHH--HHcCcccccCCCCHH
Q 002663 356 N-RIVSEWKKLFDSDPHLKDCNRVLSEGYYDLPHHLKSCLLYFGLFP--ESCKINRGRLIRLW--IAEGFVQYRKRLTSE 430 (895)
Q Consensus 356 ~-~~~~~w~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~fp--~~~~i~~~~li~~w--~a~g~~~~~~~~~~~ 430 (895)
. -+.+....+.+.. -.....-.+..||.+.|..+.-++..- ....+...++.... +++.+-. . .-..
T Consensus 268 ~~I~~~~v~~a~~~~-----~~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~~--~-~~~~ 339 (394)
T PRK00411 268 RKVTEEDVRKAYEKS-----EIVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELGY--E-PRTH 339 (394)
T ss_pred CCcCHHHHHHHHHHH-----HHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcCC--C-cCcH
Confidence 0 0122222222111 012233457789988777655544221 11335555554432 2221110 0 1122
Q ss_pred HHHHHHHHHHhhCCceeeeec--CCCCceeEEEec
Q 002663 431 QVAAEYLDELIDRSLVQVSNR--EIPGRAIICQVH 463 (895)
Q Consensus 431 ~~~~~~l~~L~~~sll~~~~~--~~~~~~~~~~mh 463 (895)
.....++..|.+.++|..... +..|+...++.+
T Consensus 340 ~~~~~~l~~L~~~glI~~~~~~~g~~g~~~~~~~~ 374 (394)
T PRK00411 340 TRFYEYINKLDMLGIINTRYSGKGGRGRTRLISLS 374 (394)
T ss_pred HHHHHHHHHHHhcCCeEEEEecCCCCCCeEEEEec
Confidence 345679999999999987543 334555555544
No 41
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.42 E-value=1.7e-07 Score=104.09 Aligned_cols=198 Identities=28% Similarity=0.267 Sum_probs=131.7
Q ss_pred eEEecCCCCCCcCccccccccCCCeEeecCCCcccccccccCcC-CCcEEEcCcccccccchhhhccccCCeEEeecccc
Q 002663 543 KVLDLEDSPINYLPEGVGNLFNLHLLNARNTKLKIIPKSIGNLL-SLEILVLARTFVSELPEEIRNLKKLRSLIVFHYKY 621 (895)
Q Consensus 543 ~~L~L~~~~~~~l~~~i~~l~~Lr~L~L~~~~l~~lp~~i~~l~-~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~ 621 (895)
..|+++.+.+...+..+..+.++..|++.++.+..+|+....+. +|+.|+++++.+..+|..+..+++|+.|++++|+
T Consensus 96 ~~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~- 174 (394)
T COG4886 96 PSLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFND- 174 (394)
T ss_pred ceeeccccccccCchhhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCch-
Confidence 35777777775555556667889999999999999998888885 9999999999999998788999999999998853
Q ss_pred cccccccccccccccccccCcccceEEeeeecChHHHHHhhccccCcEEEEEecCCCcchHHHHhhccCCCCEEEEEecC
Q 002663 622 ITGSIIPTEVAAKIHRGFGSLRGLLVLSTIEADSQVLKELMMLRQLRMLSIRPQNGNGRDLCALIANLENVETLGVLMTS 701 (895)
Q Consensus 622 ~~~~~~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~l~~L~~L~l~~~~ 701 (895)
...+|... ..+++|+.|+++++.... ++..+....+|+.|.+..|.
T Consensus 175 ----------l~~l~~~~----------------------~~~~~L~~L~ls~N~i~~--l~~~~~~~~~L~~l~~~~N~ 220 (394)
T COG4886 175 ----------LSDLPKLL----------------------SNLSNLNNLDLSGNKISD--LPPEIELLSALEELDLSNNS 220 (394)
T ss_pred ----------hhhhhhhh----------------------hhhhhhhheeccCCcccc--CchhhhhhhhhhhhhhcCCc
Confidence 22333211 145667777777765443 34444445557777777764
Q ss_pred cccccccccCcCCCcCccEEEEeccC-CCCCcccccCCCcceEEEEeccCCCcchhhhccCccccceeeccccCCCeEEE
Q 002663 702 KEEILDLQSLSSPPQHLRYLSLRGNM-KKLPDWILKLKNLIGLRLILSGLTEDPISILQALPNLLELMLHGGYDYELFHF 780 (895)
Q Consensus 702 ~~~~~~l~~~~~~~~~L~~L~l~~~~-~~lp~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~ 780 (895)
.... ........++..|.+.++. ..++..++.+++++.|++++|.+..... ++.+.+|+.|+++++......+.
T Consensus 221 ~~~~---~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 221 IIEL---LSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred ceec---chhhhhcccccccccCCceeeeccchhccccccceecccccccccccc--ccccCccCEEeccCccccccchh
Confidence 2211 1111222255556555553 3346677777778888887777654433 67777777777777766544433
No 42
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.33 E-value=1.7e-07 Score=88.34 Aligned_cols=133 Identities=24% Similarity=0.307 Sum_probs=37.9
Q ss_pred CCCcCccccccccCCCeEeecCCCccccccccc-CcCCCcEEEcCcccccccchhhhccccCCeEEeecccccccccccc
Q 002663 551 PINYLPEGVGNLFNLHLLNARNTKLKIIPKSIG-NLLSLEILVLARTFVSELPEEIRNLKKLRSLIVFHYKYITGSIIPT 629 (895)
Q Consensus 551 ~~~~l~~~i~~l~~Lr~L~L~~~~l~~lp~~i~-~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~ 629 (895)
.|...+. +.+..+++.|+|+++.|..+. .++ .+.+|+.|+|++|.+..++ ++..+++|+.|++++|.
T Consensus 8 ~i~~~~~-~~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~--------- 75 (175)
T PF14580_consen 8 MIEQIAQ-YNNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNR--------- 75 (175)
T ss_dssp ------------------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS----------
T ss_pred ccccccc-ccccccccccccccccccccc-chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCC---------
Confidence 3444443 345567899999999999875 465 5889999999999999986 48889999999999853
Q ss_pred cccccccccc-cCcccceEEeeeecCh---HHHHHhhccccCcEEEEEecCCCc--chHHHHhhccCCCCEEEE
Q 002663 630 EVAAKIHRGF-GSLRGLLVLSTIEADS---QVLKELMMLRQLRMLSIRPQNGNG--RDLCALIANLENVETLGV 697 (895)
Q Consensus 630 ~~~~~~p~~i-~~l~~L~~L~~~~~~~---~~~~~l~~l~~L~~L~l~~~~~~~--~~l~~~l~~l~~L~~L~l 697 (895)
+..++.++ ..+++|++|.+.++.. ..+..+..+++|+.|++.+|.... ..-...+..+|+|+.|+-
T Consensus 76 --I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 76 --ISSISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp ----S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred --CCccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 33333223 2355566665544422 123344455555555555532221 112233444555555543
No 43
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.33 E-value=4.8e-05 Score=94.60 Aligned_cols=268 Identities=14% Similarity=0.186 Sum_probs=147.6
Q ss_pred CceeechhhHHHHHHHHhcCCCCceEEEEEcCCCchhhHHHHHHhccccccCCCCceEEEEeCC-CCCHHHHHHHHHHHH
Q 002663 171 DEVVGIESIKDKLIDLMVNGRSKSSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGK-EYNKNDLLRTIIKEF 249 (895)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~-~~~~~~l~~~i~~~l 249 (895)
..+|-|+...+.+.+ ....+++.|.|++|.||||++...... ++.++|+++.. ..++..+...++..+
T Consensus 14 ~~~~~R~rl~~~l~~-----~~~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~~l~~~l 82 (903)
T PRK04841 14 HNTVVRERLLAKLSG-----ANNYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFASYLIAAL 82 (903)
T ss_pred cccCcchHHHHHHhc-----ccCCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHHHHHHHH
Confidence 455666655554432 235789999999999999999998752 23688999864 456667777777777
Q ss_pred HhccCCCC-CC---------CCcc-------------CcCc---cccH---------HHHHHhcCCCCCCcEEEEEcCch
Q 002663 250 HRLSKHGR-DG---------PDRH-------------AEGP---LEGQ---------KDVEHALLDNKKCSRIIVTTRHM 294 (895)
Q Consensus 250 ~~~~~~~~-~~---------~~~~-------------~~~~---L~~~---------~~l~~~l~~~~~gs~iivTTR~~ 294 (895)
........ .. +... .... ++++ +.+...+....++-++|||||..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~ 162 (903)
T PRK04841 83 QQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNL 162 (903)
T ss_pred HHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCC
Confidence 53321100 00 0000 0000 2222 12222333445567888999984
Q ss_pred hhhh--hhccCCCcceeecc----CCChhhHHHHHHHhhcCCCCCCCCchhHHHH---------HHHHHHhhhccCCCCH
Q 002663 295 NVAK--FCKSSSSVRIHELE----TLPPDEAWKLFCRKAFGPSSGGCCPSELKEF---------FIVALGGLLSTKNRIV 359 (895)
Q Consensus 295 ~v~~--~~~~~~~~~~~~l~----~L~~~es~~Lf~~~a~~~~~~~~~~~~l~~~---------ai~~~g~~l~~~~~~~ 359 (895)
.-.. ...... ...++. +|+.+|+.++|.......- ....+..+ ++..++..+.......
T Consensus 163 ~~~~~~~l~~~~--~~~~l~~~~l~f~~~e~~~ll~~~~~~~~----~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~~ 236 (903)
T PRK04841 163 PPLGIANLRVRD--QLLEIGSQQLAFDHQEAQQFFDQRLSSPI----EAAESSRLCDDVEGWATALQLIALSARQNNSSL 236 (903)
T ss_pred CCCchHhHHhcC--cceecCHHhCCCCHHHHHHHHHhccCCCC----CHHHHHHHHHHhCChHHHHHHHHHHHhhCCCch
Confidence 2111 111111 345555 9999999999987654322 22333333 4444444443222101
Q ss_pred HHHHhhhhcCCChHHHHHHHhc-ccCCCChhhhhHhcccccCCCCcccchhhHHHHHHHcCcccccCCCCHHHHHHHHHH
Q 002663 360 SEWKKLFDSDPHLKDCNRVLSE-GYYDLPHHLKSCLLYFGLFPESCKINRGRLIRLWIAEGFVQYRKRLTSEQVAAEYLD 438 (895)
Q Consensus 360 ~~w~~~~~~~~~~~~i~~~l~~-sy~~L~~~~k~~fl~~a~fp~~~~i~~~~li~~w~a~g~~~~~~~~~~~~~~~~~l~ 438 (895)
......+. ......+...+.- -++.||+..+..++..|+++ .++.+.+-. +.. .+.+...++
T Consensus 237 ~~~~~~~~-~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~---~~~~~l~~~------l~~-------~~~~~~~L~ 299 (903)
T PRK04841 237 HDSARRLA-GINASHLSDYLVEEVLDNVDLETRHFLLRCSVLR---SMNDALIVR------VTG-------EENGQMRLE 299 (903)
T ss_pred hhhhHhhc-CCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc---cCCHHHHHH------HcC-------CCcHHHHHH
Confidence 11000000 0012335544333 37899999999999999986 244322211 111 111467899
Q ss_pred HHhhCCceeeeecCCCCceeEEEecHHHHHHHHHHhh
Q 002663 439 ELIDRSLVQVSNREIPGRAIICQVHDLMHEIIIRKTE 475 (895)
Q Consensus 439 ~L~~~sll~~~~~~~~~~~~~~~mhdli~~~~~~~~~ 475 (895)
+|.+.+++....... + ..|+.|++++++.+....
T Consensus 300 ~l~~~~l~~~~~~~~-~--~~yr~H~L~r~~l~~~l~ 333 (903)
T PRK04841 300 ELERQGLFIQRMDDS-G--EWFRYHPLFASFLRHRCQ 333 (903)
T ss_pred HHHHCCCeeEeecCC-C--CEEehhHHHHHHHHHHHH
Confidence 999999975432211 1 247789999999887653
No 44
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.31 E-value=6.1e-07 Score=69.12 Aligned_cols=56 Identities=32% Similarity=0.499 Sum_probs=27.5
Q ss_pred eeeEEecCCCCCCcCc-cccccccCCCeEeecCCCcccccc-cccCcCCCcEEEcCcc
Q 002663 541 LMKVLDLEDSPINYLP-EGVGNLFNLHLLNARNTKLKIIPK-SIGNLLSLEILVLART 596 (895)
Q Consensus 541 ~L~~L~L~~~~~~~l~-~~i~~l~~Lr~L~L~~~~l~~lp~-~i~~l~~L~~L~L~~~ 596 (895)
+|++|++++|.+..+| ..|..+++|++|++++|.+..+|+ .+..+++|++|++++|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 3455555555555444 234455555555555555554432 3444555555555444
No 45
>PF05729 NACHT: NACHT domain
Probab=98.30 E-value=1.2e-06 Score=84.04 Aligned_cols=132 Identities=18% Similarity=0.238 Sum_probs=73.6
Q ss_pred eEEEEEcCCCchhhHHHHHHhccccccCC----CCceEEEEeCCCCCHH---HHHHHHHHHHHhccCCCCCCCCc---cC
Q 002663 195 SVVAVVGEGGLGKTTLAGKLFNNEGLKTH----FSCRAWVTVGKEYNKN---DLLRTIIKEFHRLSKHGRDGPDR---HA 264 (895)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~----F~~~~wv~~~~~~~~~---~l~~~i~~~l~~~~~~~~~~~~~---~~ 264 (895)
|++.|+|.+|+||||+++.++.+...... +...+|+......... .+...+..+.............. ..
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKN 80 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcC
Confidence 58999999999999999999986544433 3455666655443322 33333333332211110000000 00
Q ss_pred cC---ccccHH---------------H-HHHhcCC-CCCCcEEEEEcCchhhhhhhccCCCcceeeccCCChhhHHHHHH
Q 002663 265 EG---PLEGQK---------------D-VEHALLD-NKKCSRIIVTTRHMNVAKFCKSSSSVRIHELETLPPDEAWKLFC 324 (895)
Q Consensus 265 ~~---~L~~~~---------------~-l~~~l~~-~~~gs~iivTTR~~~v~~~~~~~~~~~~~~l~~L~~~es~~Lf~ 324 (895)
.. .+++.| . +...+.. ..++.++|||||................+++++|++++..+++.
T Consensus 81 ~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 160 (166)
T PF05729_consen 81 KRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDIKQYLR 160 (166)
T ss_pred CceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHHHHHHH
Confidence 00 011111 1 2222332 35689999999998773322222222689999999999999997
Q ss_pred Hh
Q 002663 325 RK 326 (895)
Q Consensus 325 ~~ 326 (895)
++
T Consensus 161 ~~ 162 (166)
T PF05729_consen 161 KY 162 (166)
T ss_pred HH
Confidence 66
No 46
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.27 E-value=1.8e-07 Score=91.53 Aligned_cols=87 Identities=24% Similarity=0.170 Sum_probs=57.7
Q ss_pred cccCCCceeeEEecCCCCCC---cCccccccccCCCeEeecCCCcccccccc-cCcCCCcEEEcCcc--cccccchhhhc
Q 002663 534 SCIANFKLMKVLDLEDSPIN---YLPEGVGNLFNLHLLNARNTKLKIIPKSI-GNLLSLEILVLART--FVSELPEEIRN 607 (895)
Q Consensus 534 ~~~~~~~~L~~L~L~~~~~~---~l~~~i~~l~~Lr~L~L~~~~l~~lp~~i-~~l~~L~~L~L~~~--~l~~lp~~i~~ 607 (895)
.+-..+..++.|||.+|.|. ++-..+.+||+|++|+|+.|++..--.++ -.+.+|++|.|.++ ..+.+...+..
T Consensus 65 ~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~ 144 (418)
T KOG2982|consen 65 LFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDD 144 (418)
T ss_pred HHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhc
Confidence 44456777888888888776 33344567888888888887655221112 24567888888777 44455566677
Q ss_pred cccCCeEEeeccc
Q 002663 608 LKKLRSLIVFHYK 620 (895)
Q Consensus 608 l~~L~~L~l~~~~ 620 (895)
+|+++.|+++.|+
T Consensus 145 lP~vtelHmS~N~ 157 (418)
T KOG2982|consen 145 LPKVTELHMSDNS 157 (418)
T ss_pred chhhhhhhhccch
Confidence 7888888777754
No 47
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.25 E-value=1e-05 Score=86.76 Aligned_cols=254 Identities=19% Similarity=0.106 Sum_probs=126.2
Q ss_pred CCceeechhhHHHHHHHHhc---CCCCceEEEEEcCCCchhhHHHHHHhccccccCCCCceEEEEeCCCCCHHHHHHHHH
Q 002663 170 DDEVVGIESIKDKLIDLMVN---GRSKSSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRTII 246 (895)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~---~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~l~~~i~ 246 (895)
-.+|||+++.++.+..++.. .......+.|+|++|+||||+|+.+++. ....+ .++... .......+..++
T Consensus 24 ~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~--l~~~~---~~~~~~-~~~~~~~l~~~l 97 (328)
T PRK00080 24 LDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANE--MGVNI---RITSGP-ALEKPGDLAAIL 97 (328)
T ss_pred HHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHH--hCCCe---EEEecc-cccChHHHHHHH
Confidence 46799999999999988863 2334567889999999999999999995 32222 122211 112222223333
Q ss_pred HHHHhccCCCCCCCCccCcCccc--cHHHHHHh---------cCC----------CCCCcEEEEEcCchhhhhhhccCCC
Q 002663 247 KEFHRLSKHGRDGPDRHAEGPLE--GQKDVEHA---------LLD----------NKKCSRIIVTTRHMNVAKFCKSSSS 305 (895)
Q Consensus 247 ~~l~~~~~~~~~~~~~~~~~~L~--~~~~l~~~---------l~~----------~~~gs~iivTTR~~~v~~~~~~~~~ 305 (895)
..+... ...-.+..+.+. ..+.+... +.. ..+.+-|..|||...+...... ..
T Consensus 98 ~~l~~~-----~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~~~~~l~~~L~s-Rf 171 (328)
T PRK00080 98 TNLEEG-----DVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATTRAGLLTSPLRD-RF 171 (328)
T ss_pred HhcccC-----CEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCCCceEEeecCCcccCCHHHHH-hc
Confidence 322110 000000000000 00001000 000 1223456667775544332211 01
Q ss_pred cceeeccCCChhhHHHHHHHhhcCCCCCCCCchhHHHHHHHHHHhhhccCCC---CHHHHHhhhhc-CCCh---HHHHHH
Q 002663 306 VRIHELETLPPDEAWKLFCRKAFGPSSGGCCPSELKEFFIVALGGLLSTKNR---IVSEWKKLFDS-DPHL---KDCNRV 378 (895)
Q Consensus 306 ~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~l~~~ai~~~g~~l~~~~~---~~~~w~~~~~~-~~~~---~~i~~~ 378 (895)
...+++++++.++..+++...+..... ...++.....+...++..+.-.. ....|...... .-.. ......
T Consensus 172 ~~~~~l~~~~~~e~~~il~~~~~~~~~--~~~~~~~~~ia~~~~G~pR~a~~~l~~~~~~a~~~~~~~I~~~~v~~~l~~ 249 (328)
T PRK00080 172 GIVQRLEFYTVEELEKIVKRSARILGV--EIDEEGALEIARRSRGTPRIANRLLRRVRDFAQVKGDGVITKEIADKALDM 249 (328)
T ss_pred CeeeecCCCCHHHHHHHHHHHHHHcCC--CcCHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 157899999999999999988765432 22232222222222222111000 01223222111 1111 233455
Q ss_pred HhcccCCCChhhhhHhc-ccccCCCCcccchhhHHHHHHHcCcccccCCCCHHHHHHHHHH-HHhhCCceeee
Q 002663 379 LSEGYYDLPHHLKSCLL-YFGLFPESCKINRGRLIRLWIAEGFVQYRKRLTSEQVAAEYLD-ELIDRSLVQVS 449 (895)
Q Consensus 379 l~~sy~~L~~~~k~~fl-~~a~fp~~~~i~~~~li~~w~a~g~~~~~~~~~~~~~~~~~l~-~L~~~sll~~~ 449 (895)
+...|..|++..+..+. ....|+.+ .+..+.+...+ | ...+.+++.++ .|++.+|++..
T Consensus 250 ~~~~~~~l~~~~~~~l~~~~~~~~~~-~~~~~~~a~~l---g--------~~~~~~~~~~e~~Li~~~li~~~ 310 (328)
T PRK00080 250 LGVDELGLDEMDRKYLRTIIEKFGGG-PVGLDTLAAAL---G--------EERDTIEDVYEPYLIQQGFIQRT 310 (328)
T ss_pred hCCCcCCCCHHHHHHHHHHHHHcCCC-ceeHHHHHHHH---C--------CCcchHHHHhhHHHHHcCCcccC
Confidence 66778889888777775 55566544 45555543322 1 11223444566 89999999743
No 48
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.22 E-value=2.9e-05 Score=82.74 Aligned_cols=257 Identities=17% Similarity=0.101 Sum_probs=122.4
Q ss_pred CceeechhhHHHHHHHHhcC---CCCceEEEEEcCCCchhhHHHHHHhccccccCCCCceEEEEeCCCCCHHHHHHHHHH
Q 002663 171 DEVVGIESIKDKLIDLMVNG---RSKSSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRTIIK 247 (895)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~---~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~l~~~i~~ 247 (895)
.+|||+++.++++..++... ......+.++|++|+|||+||+++++. ....| ..+..+......++ ...+.
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~--~~~~~---~~~~~~~~~~~~~l-~~~l~ 77 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANE--MGVNL---KITSGPALEKPGDL-AAILT 77 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHH--hCCCE---EEeccchhcCchhH-HHHHH
Confidence 57899999999999988632 223556889999999999999999985 33222 11221111112222 22222
Q ss_pred HHHhcc----CCCCCCCCccCcCccccH-HHHHH--hc----------CCCCCCcEEEEEcCchhhhhhhccCCCcceee
Q 002663 248 EFHRLS----KHGRDGPDRHAEGPLEGQ-KDVEH--AL----------LDNKKCSRIIVTTRHMNVAKFCKSSSSVRIHE 310 (895)
Q Consensus 248 ~l~~~~----~~~~~~~~~~~~~~L~~~-~~l~~--~l----------~~~~~gs~iivTTR~~~v~~~~~~~~~~~~~~ 310 (895)
.+.... ++....+. ...+.|..+ +.... .+ ....+.+-|..||+...+...... .....++
T Consensus 78 ~~~~~~vl~iDEi~~l~~-~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~~~l~~~l~s-R~~~~~~ 155 (305)
T TIGR00635 78 NLEEGDVLFIDEIHRLSP-AVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRAGMLTSPLRD-RFGIILR 155 (305)
T ss_pred hcccCCEEEEehHhhhCH-HHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCCccccCHHHHh-hcceEEE
Confidence 221100 00000000 000001000 00000 00 011224556667776544332211 0115789
Q ss_pred ccCCChhhHHHHHHHhhcCCCCCCCCchhHHHHHHHHHHhhhccCCCC-HHHHHhhh--hcC-CCh---HHHHHHHhccc
Q 002663 311 LETLPPDEAWKLFCRKAFGPSSGGCCPSELKEFFIVALGGLLSTKNRI-VSEWKKLF--DSD-PHL---KDCNRVLSEGY 383 (895)
Q Consensus 311 l~~L~~~es~~Lf~~~a~~~~~~~~~~~~l~~~ai~~~g~~l~~~~~~-~~~w~~~~--~~~-~~~---~~i~~~l~~sy 383 (895)
+++++.++..+++.+.+..... ...++.....+...++..+.-... ...|.... ... -.. ......+...|
T Consensus 156 l~~l~~~e~~~il~~~~~~~~~--~~~~~al~~ia~~~~G~pR~~~~ll~~~~~~a~~~~~~~it~~~v~~~l~~l~~~~ 233 (305)
T TIGR00635 156 LEFYTVEELAEIVSRSAGLLNV--EIEPEAALEIARRSRGTPRIANRLLRRVRDFAQVRGQKIINRDIALKALEMLMIDE 233 (305)
T ss_pred eCCCCHHHHHHHHHHHHHHhCC--CcCHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHhCCCC
Confidence 9999999999999988754321 222332222222222222111000 01122211 111 111 12233356778
Q ss_pred CCCChhhhhHhc-ccccCCCCcccchhhHHHHHHHcCcccccCCCCHHHHHHHHHH-HHhhCCceeee
Q 002663 384 YDLPHHLKSCLL-YFGLFPESCKINRGRLIRLWIAEGFVQYRKRLTSEQVAAEYLD-ELIDRSLVQVS 449 (895)
Q Consensus 384 ~~L~~~~k~~fl-~~a~fp~~~~i~~~~li~~w~a~g~~~~~~~~~~~~~~~~~l~-~L~~~sll~~~ 449 (895)
..+++..+..+. ..+.+..+ .+..+++.... |. ....+...++ .|++++||...
T Consensus 234 ~~l~~~~~~~L~al~~~~~~~-~~~~~~ia~~l---g~--------~~~~~~~~~e~~Li~~~li~~~ 289 (305)
T TIGR00635 234 LGLDEIDRKLLSVLIEQFQGG-PVGLKTLAAAL---GE--------DADTIEDVYEPYLLQIGFLQRT 289 (305)
T ss_pred CCCCHHHHHHHHHHHHHhCCC-cccHHHHHHHh---CC--------CcchHHHhhhHHHHHcCCcccC
Confidence 889888777665 44556433 44443333322 11 1223556677 69999999743
No 49
>PTZ00202 tuzin; Provisional
Probab=98.21 E-value=5.9e-05 Score=79.48 Aligned_cols=76 Identities=17% Similarity=0.184 Sum_probs=58.9
Q ss_pred CCCCceeechhhHHHHHHHHhcCC-CCceEEEEEcCCCchhhHHHHHHhccccccCCCCceEEEEeCCCCCHHHHHHHHH
Q 002663 168 VEDDEVVGIESIKDKLIDLMVNGR-SKSSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRTII 246 (895)
Q Consensus 168 ~~~~~~vGr~~~~~~l~~~L~~~~-~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~l~~~i~ 246 (895)
.+...|+||+.++.++...|...+ ...+++.|.|++|+|||||++.+... .. ...++.... +..++++.++
T Consensus 259 a~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~--l~----~~qL~vNpr--g~eElLr~LL 330 (550)
T PTZ00202 259 AVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRK--EG----MPAVFVDVR--GTEDTLRSVV 330 (550)
T ss_pred CCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhc--CC----ceEEEECCC--CHHHHHHHHH
Confidence 345689999999999999997543 23469999999999999999999974 22 123333333 6799999999
Q ss_pred HHHHh
Q 002663 247 KEFHR 251 (895)
Q Consensus 247 ~~l~~ 251 (895)
.+|+.
T Consensus 331 ~ALGV 335 (550)
T PTZ00202 331 KALGV 335 (550)
T ss_pred HHcCC
Confidence 99986
No 50
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.18 E-value=1.6e-06 Score=66.71 Aligned_cols=58 Identities=36% Similarity=0.442 Sum_probs=52.2
Q ss_pred cCCCeEeecCCCcccccc-cccCcCCCcEEEcCcccccccch-hhhccccCCeEEeeccc
Q 002663 563 FNLHLLNARNTKLKIIPK-SIGNLLSLEILVLARTFVSELPE-EIRNLKKLRSLIVFHYK 620 (895)
Q Consensus 563 ~~Lr~L~L~~~~l~~lp~-~i~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~~~ 620 (895)
++|++|++++|.+..+|+ .+..+++|++|++++|.+..+|. .+..+++|++|++++|+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 579999999999999985 67899999999999999999976 67899999999999863
No 51
>PLN03150 hypothetical protein; Provisional
Probab=98.11 E-value=4.5e-06 Score=97.07 Aligned_cols=80 Identities=26% Similarity=0.490 Sum_probs=69.7
Q ss_pred eeeEEecCCCCCC-cCccccccccCCCeEeecCCCcc-cccccccCcCCCcEEEcCccccc-ccchhhhccccCCeEEee
Q 002663 541 LMKVLDLEDSPIN-YLPEGVGNLFNLHLLNARNTKLK-IIPKSIGNLLSLEILVLARTFVS-ELPEEIRNLKKLRSLIVF 617 (895)
Q Consensus 541 ~L~~L~L~~~~~~-~l~~~i~~l~~Lr~L~L~~~~l~-~lp~~i~~l~~L~~L~L~~~~l~-~lp~~i~~l~~L~~L~l~ 617 (895)
.++.|+|+++.+. .+|..++.+++|++|+|++|.+. .+|..++.+++|+.|+|++|.+. .+|..++++++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 4788999999887 77888999999999999999887 78888999999999999999776 678889999999999998
Q ss_pred ccc
Q 002663 618 HYK 620 (895)
Q Consensus 618 ~~~ 620 (895)
+|.
T Consensus 499 ~N~ 501 (623)
T PLN03150 499 GNS 501 (623)
T ss_pred CCc
Confidence 864
No 52
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.07 E-value=6.8e-07 Score=99.28 Aligned_cols=194 Identities=26% Similarity=0.323 Sum_probs=91.8
Q ss_pred cCCCceeeEEecCCCCCCcCccccccccCCCeEeecCCCcccccccccCcCCCcEEEcCcccccccchhhhccccCCeEE
Q 002663 536 IANFKLMKVLDLEDSPINYLPEGVGNLFNLHLLNARNTKLKIIPKSIGNLLSLEILVLARTFVSELPEEIRNLKKLRSLI 615 (895)
Q Consensus 536 ~~~~~~L~~L~L~~~~~~~l~~~i~~l~~Lr~L~L~~~~l~~lp~~i~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~ 615 (895)
+..++.|..|++.+|.+..+...+..+++|++|++++|.|+.+.. +..+..|+.|++++|.+..+.. +..+++|+.++
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~-l~~l~~L~~L~l~~N~i~~~~~-~~~l~~L~~l~ 168 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEG-LSTLTLLKELNLSGNLISDISG-LESLKSLKLLD 168 (414)
T ss_pred cccccceeeeeccccchhhcccchhhhhcchheeccccccccccc-hhhccchhhheeccCcchhccC-Cccchhhhccc
Confidence 444555555555555555554445555555555555555555542 4445555555555555554432 33355555555
Q ss_pred eecccccccccccccccccccccccCcccceEEeeeecChHHHHH--hhccccCcEEEEEecCCCcchHHHHhhccCCCC
Q 002663 616 VFHYKYITGSIIPTEVAAKIHRGFGSLRGLLVLSTIEADSQVLKE--LMMLRQLRMLSIRPQNGNGRDLCALIANLENVE 693 (895)
Q Consensus 616 l~~~~~~~~~~~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~--l~~l~~L~~L~l~~~~~~~~~l~~~l~~l~~L~ 693 (895)
+++| ....... +..+.+++.+.+.++..... ..+..+..+.
T Consensus 169 l~~n----------------------------------~i~~ie~~~~~~~~~l~~l~l~~n~i~~i---~~~~~~~~l~ 211 (414)
T KOG0531|consen 169 LSYN----------------------------------RIVDIENDELSELISLEELDLGGNSIREI---EGLDLLKKLV 211 (414)
T ss_pred CCcc----------------------------------hhhhhhhhhhhhccchHHHhccCCchhcc---cchHHHHHHH
Confidence 5443 2222222 45566666666666433221 1122222333
Q ss_pred EEEEEecCcccccccccCcCCCcCccEEEEeccC-CCCCcccccCCCcceEEEEeccCCCcchhhhccCccccceeeccc
Q 002663 694 TLGVLMTSKEEILDLQSLSSPPQHLRYLSLRGNM-KKLPDWILKLKNLIGLRLILSGLTEDPISILQALPNLLELMLHGG 772 (895)
Q Consensus 694 ~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~lp~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~ 772 (895)
.+++..+.......+...... +|+.+++.++. ...+..+..+.++..|++.++.+.. ...+...+.+..+.+..+
T Consensus 212 ~~~l~~n~i~~~~~l~~~~~~--~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~~--~~~~~~~~~~~~~~~~~~ 287 (414)
T KOG0531|consen 212 LLSLLDNKISKLEGLNELVML--HLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRISN--LEGLERLPKLSELWLNDN 287 (414)
T ss_pred HhhcccccceeccCcccchhH--HHHHHhcccCccccccccccccccccccchhhccccc--cccccccchHHHhccCcc
Confidence 334444433322221111100 26677777664 2333455566666677766665432 122233444444444444
No 53
>PRK06893 DNA replication initiation factor; Validated
Probab=98.06 E-value=1.8e-05 Score=79.69 Aligned_cols=127 Identities=12% Similarity=0.114 Sum_probs=69.3
Q ss_pred ceEEEEEcCCCchhhHHHHHHhccccccCCCCceEEEEeCCCCCHHHHHHHHHHHHHhccCCCCCCCCc-cCcCccccHH
Q 002663 194 SSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRTIIKEFHRLSKHGRDGPDR-HAEGPLEGQK 272 (895)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~-~~~~~L~~~~ 272 (895)
.+.+.|||++|+|||+||+++++. .......+.|+.+... ......+.+.+....- -..++ +....-..|+
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~y~~~~~~---~~~~~~~~~~~~~~dl---LilDDi~~~~~~~~~~ 110 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNH--YLLNQRTAIYIPLSKS---QYFSPAVLENLEQQDL---VCLDDLQAVIGNEEWE 110 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEeeHHHh---hhhhHHHHhhcccCCE---EEEeChhhhcCChHHH
Confidence 457899999999999999999985 3333445667776421 1111222222211000 00000 0000001333
Q ss_pred H-HHHhcCCC-CCCcEEEEEcCc----------hhhhhhhccCCCcceeeccCCChhhHHHHHHHhhcCCC
Q 002663 273 D-VEHALLDN-KKCSRIIVTTRH----------MNVAKFCKSSSSVRIHELETLPPDEAWKLFCRKAFGPS 331 (895)
Q Consensus 273 ~-l~~~l~~~-~~gs~iivTTR~----------~~v~~~~~~~~~~~~~~l~~L~~~es~~Lf~~~a~~~~ 331 (895)
. +...+... ..|+.+||||.+ +++...+... .++++++++.++.+++++++++...
T Consensus 111 ~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g---~~~~l~~pd~e~~~~iL~~~a~~~~ 178 (229)
T PRK06893 111 LAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWG---EIYQLNDLTDEQKIIVLQRNAYQRG 178 (229)
T ss_pred HHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcC---CeeeCCCCCHHHHHHHHHHHHHHcC
Confidence 2 22222211 235566554443 3565555443 6899999999999999999987543
No 54
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.04 E-value=5.2e-06 Score=58.26 Aligned_cols=39 Identities=31% Similarity=0.486 Sum_probs=22.4
Q ss_pred CCCeEeecCCCcccccccccCcCCCcEEEcCcccccccc
Q 002663 564 NLHLLNARNTKLKIIPKSIGNLLSLEILVLARTFVSELP 602 (895)
Q Consensus 564 ~Lr~L~L~~~~l~~lp~~i~~l~~L~~L~L~~~~l~~lp 602 (895)
+|++|++++|.|+.+|+.+++|++|++|++++|.++.++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 556666666666666655666666666666666555443
No 55
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.04 E-value=1.3e-05 Score=82.88 Aligned_cols=144 Identities=24% Similarity=0.228 Sum_probs=77.7
Q ss_pred CceeechhhH---HHHHHHHhcCCCCceEEEEEcCCCchhhHHHHHHhccccccCCCCceEEEEeCCCCCHHHHHHHHHH
Q 002663 171 DEVVGIESIK---DKLIDLMVNGRSKSSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRTIIK 247 (895)
Q Consensus 171 ~~~vGr~~~~---~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~l~~~i~~ 247 (895)
+++||-+..+ .-|.+++..+ .+.-.-+||++|+||||||+.+... ....| ..++-..+-.+-++.+++
T Consensus 24 de~vGQ~HLlg~~~~lrr~v~~~--~l~SmIl~GPPG~GKTTlA~liA~~--~~~~f-----~~~sAv~~gvkdlr~i~e 94 (436)
T COG2256 24 DEVVGQEHLLGEGKPLRRAVEAG--HLHSMILWGPPGTGKTTLARLIAGT--TNAAF-----EALSAVTSGVKDLREIIE 94 (436)
T ss_pred HHhcChHhhhCCCchHHHHHhcC--CCceeEEECCCCCCHHHHHHHHHHh--hCCce-----EEeccccccHHHHHHHHH
Confidence 4455554433 2233444443 3666779999999999999999983 55544 333333333333333333
Q ss_pred HHHhccC-CCCCCCCccCcCccccHH--HHHHhcCCCCCCcEEEE--EcCchhhhhhhccCCCcceeeccCCChhhHHHH
Q 002663 248 EFHRLSK-HGRDGPDRHAEGPLEGQK--DVEHALLDNKKCSRIIV--TTRHMNVAKFCKSSSSVRIHELETLPPDEAWKL 322 (895)
Q Consensus 248 ~l~~~~~-~~~~~~~~~~~~~L~~~~--~l~~~l~~~~~gs~iiv--TTR~~~v~~~~~~~~~~~~~~l~~L~~~es~~L 322 (895)
.-..... ...... ..+++.-++ +-...||...+|.-|+| ||-++...-.-.--+...++++++|+.++-.++
T Consensus 95 ~a~~~~~~gr~tiL---flDEIHRfnK~QQD~lLp~vE~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~ 171 (436)
T COG2256 95 EARKNRLLGRRTIL---FLDEIHRFNKAQQDALLPHVENGTIILIGATTENPSFELNPALLSRARVFELKPLSSEDIKKL 171 (436)
T ss_pred HHHHHHhcCCceEE---EEehhhhcChhhhhhhhhhhcCCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHHHHH
Confidence 3211110 000000 011111111 11234667777887777 677764322211112237999999999999999
Q ss_pred HHHh
Q 002663 323 FCRK 326 (895)
Q Consensus 323 f~~~ 326 (895)
+.+-
T Consensus 172 l~ra 175 (436)
T COG2256 172 LKRA 175 (436)
T ss_pred HHHH
Confidence 9883
No 56
>PF13173 AAA_14: AAA domain
Probab=98.04 E-value=1.2e-05 Score=73.03 Aligned_cols=123 Identities=20% Similarity=0.136 Sum_probs=72.1
Q ss_pred ceEEEEEcCCCchhhHHHHHHhccccccCCCCceEEEEeCCCCCHHHHHHHHHHHHHhccCCCCCCCCccCcCccccHHH
Q 002663 194 SSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRTIIKEFHRLSKHGRDGPDRHAEGPLEGQKD 273 (895)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~~~ 273 (895)
-+++.|.|+.|+||||++++++.+.. .....+|++............++.+.+......+....-.+....+.+|..
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iDEiq~~~~~~~ 78 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLADPDLLEYFLELIKPGKKYIFIDEIQYLPDWED 78 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHhhhhhHHHHHHhhccCCcEEEEehhhhhccHHH
Confidence 36899999999999999999997522 335566777655433221111122222221101001111133344567877
Q ss_pred HHHhcCCCCCCcEEEEEcCchhhhhhhc---cCCCcceeeccCCChhhH
Q 002663 274 VEHALLDNKKCSRIIVTTRHMNVAKFCK---SSSSVRIHELETLPPDEA 319 (895)
Q Consensus 274 l~~~l~~~~~gs~iivTTR~~~v~~~~~---~~~~~~~~~l~~L~~~es 319 (895)
....+.+..+..+|++|+.+......-. ..+....+++.||+..|-
T Consensus 79 ~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 79 ALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred HHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 7777766666789999999876663311 112235689999988773
No 57
>PLN03150 hypothetical protein; Provisional
Probab=97.99 E-value=5e-06 Score=96.70 Aligned_cols=111 Identities=20% Similarity=0.084 Sum_probs=77.9
Q ss_pred CccEEEEeccC--CCCCcccccCCCcceEEEEeccCCCcchhhhccCccccceeeccccCCCeEEEecCCCcccceeeec
Q 002663 717 HLRYLSLRGNM--KKLPDWILKLKNLIGLRLILSGLTEDPISILQALPNLLELMLHGGYDYELFHFEAGWFPKLRKLVLL 794 (895)
Q Consensus 717 ~L~~L~l~~~~--~~lp~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~ 794 (895)
.++.|+|+++. +.+|..++.+++|+.|+|++|.+.+..+..++.+++|+.|+|++|.+...++...+.+++|+.|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 36677777763 4677777778888888888887777777777788888888888777776667667777788888887
Q ss_pred cCCCceeeEEccCc-ccccceEEEccCCCCcccC
Q 002663 795 NFEAVKLVIIEKGA-MPDIRELWSGPCPLLMEIP 827 (895)
Q Consensus 795 ~~~~l~~l~~~~~~-~~~L~~L~l~~c~~l~~lp 827 (895)
+|.....+|..++. +.++..+++.+|+.+...|
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCC
Confidence 77655556554443 2456677777776555443
No 58
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.94 E-value=8.4e-06 Score=57.21 Aligned_cols=41 Identities=37% Similarity=0.458 Sum_probs=36.1
Q ss_pred ceeeEEecCCCCCCcCccccccccCCCeEeecCCCcccccc
Q 002663 540 KLMKVLDLEDSPINYLPEGVGNLFNLHLLNARNTKLKIIPK 580 (895)
Q Consensus 540 ~~L~~L~L~~~~~~~l~~~i~~l~~Lr~L~L~~~~l~~lp~ 580 (895)
++|++|++++|.++.+|..+++|++|++|++++|+++.+|+
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDISP 41 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCcC
Confidence 47999999999999999889999999999999999998764
No 59
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.92 E-value=0.00087 Score=76.19 Aligned_cols=272 Identities=17% Similarity=0.219 Sum_probs=151.2
Q ss_pred CceeechhhHHHHHHHHhcCCCCceEEEEEcCCCchhhHHHHHHhccccccCCCCceEEEEeCCC-CCHHHHHHHHHHHH
Q 002663 171 DEVVGIESIKDKLIDLMVNGRSKSSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKE-YNKNDLLRTIIKEF 249 (895)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~-~~~~~l~~~i~~~l 249 (895)
.+.|-|.. +.+.|... .+.|.+.|..+.|.|||||+-+... ....-..+.|.+.... .++..+.+-++..+
T Consensus 19 ~~~v~R~r----L~~~L~~~-~~~RL~li~APAGfGKttl~aq~~~---~~~~~~~v~Wlslde~dndp~rF~~yLi~al 90 (894)
T COG2909 19 DNYVVRPR----LLDRLRRA-NDYRLILISAPAGFGKTTLLAQWRE---LAADGAAVAWLSLDESDNDPARFLSYLIAAL 90 (894)
T ss_pred ccccccHH----HHHHHhcC-CCceEEEEeCCCCCcHHHHHHHHHH---hcCcccceeEeecCCccCCHHHHHHHHHHHH
Confidence 34454544 44444433 3589999999999999999999875 2223356889997654 67788888888888
Q ss_pred HhccCCCCCCCCc----cCcCc----------------------cccHHH---------HHHhcCCCCCCcEEEEEcCch
Q 002663 250 HRLSKHGRDGPDR----HAEGP----------------------LEGQKD---------VEHALLDNKKCSRIIVTTRHM 294 (895)
Q Consensus 250 ~~~~~~~~~~~~~----~~~~~----------------------L~~~~~---------l~~~l~~~~~gs~iivTTR~~ 294 (895)
........+.... +.... +++|.- +...+....++-.+|||||++
T Consensus 91 ~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~r 170 (894)
T COG2909 91 QQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSR 170 (894)
T ss_pred HHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccC
Confidence 7543321110000 00000 223322 222334455678999999987
Q ss_pred hhhhhhccCCCcceeecc----CCChhhHHHHHHHhhcCCCCCCCCchhHHHH---------HHHHHHhhhccCCCCHHH
Q 002663 295 NVAKFCKSSSSVRIHELE----TLPPDEAWKLFCRKAFGPSSGGCCPSELKEF---------FIVALGGLLSTKNRIVSE 361 (895)
Q Consensus 295 ~v~~~~~~~~~~~~~~l~----~L~~~es~~Lf~~~a~~~~~~~~~~~~l~~~---------ai~~~g~~l~~~~~~~~~ 361 (895)
--......--.+...++. .++.+|+-++|...-...- ...++..+ |+..++-.++ .+.+.+.
T Consensus 171 P~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~L----d~~~~~~L~~~teGW~~al~L~aLa~~-~~~~~~q 245 (894)
T COG2909 171 PQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLPL----DAADLKALYDRTEGWAAALQLIALALR-NNTSAEQ 245 (894)
T ss_pred CCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCCCC----ChHHHHHHHhhcccHHHHHHHHHHHcc-CCCcHHH
Confidence 322211100011233333 4788999999987742221 12223222 4444444444 2221222
Q ss_pred HHhhhhcCCChHHHHHH-HhcccCCCChhhhhHhcccccCCCCcccchhhHHHHHHHcCcccccCCCCHHHHHHHHHHHH
Q 002663 362 WKKLFDSDPHLKDCNRV-LSEGYYDLPHHLKSCLLYFGLFPESCKINRGRLIRLWIAEGFVQYRKRLTSEQVAAEYLDEL 440 (895)
Q Consensus 362 w~~~~~~~~~~~~i~~~-l~~sy~~L~~~~k~~fl~~a~fp~~~~i~~~~li~~w~a~g~~~~~~~~~~~~~~~~~l~~L 440 (895)
-...+... ...+.+- ..-=++.||+++|..++.+|+++. +. ++|.....+ ++.+...+++|
T Consensus 246 ~~~~LsG~--~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~~---f~-~eL~~~Ltg------------~~ng~amLe~L 307 (894)
T COG2909 246 SLRGLSGA--ASHLSDYLVEEVLDRLPPELRDFLLQTSVLSR---FN-DELCNALTG------------EENGQAMLEEL 307 (894)
T ss_pred Hhhhccch--HHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHH---hh-HHHHHHHhc------------CCcHHHHHHHH
Confidence 22211111 1112111 122357899999999999999853 22 223322211 22367789999
Q ss_pred hhCCceeeeecCCCCceeEEEecHHHHHHHHHHhhh
Q 002663 441 IDRSLVQVSNREIPGRAIICQVHDLMHEIIIRKTEE 476 (895)
Q Consensus 441 ~~~sll~~~~~~~~~~~~~~~mhdli~~~~~~~~~~ 476 (895)
..++|+-..-++.. ..|+.|.+..++.+...+.
T Consensus 308 ~~~gLFl~~Ldd~~---~WfryH~LFaeFL~~r~~~ 340 (894)
T COG2909 308 ERRGLFLQRLDDEG---QWFRYHHLFAEFLRQRLQR 340 (894)
T ss_pred HhCCCceeeecCCC---ceeehhHHHHHHHHhhhcc
Confidence 99998875443322 4589999999998776654
No 60
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.91 E-value=1.3e-06 Score=97.13 Aligned_cols=105 Identities=21% Similarity=0.234 Sum_probs=82.5
Q ss_pred cCCcceeEEEEEccCCCCccchhcccCCCceeeEEecCCCCCCcCccccccccCCCeEeecCCCcccccccccCcCCCcE
Q 002663 511 IKDWKVRSVILFNVDKLPDSFMKSCIANFKLMKVLDLEDSPINYLPEGVGNLFNLHLLNARNTKLKIIPKSIGNLLSLEI 590 (895)
Q Consensus 511 ~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~i~~l~~Lr~L~L~~~~l~~lp~~i~~l~~L~~ 590 (895)
.....+..+.+.++... .....+..+++|++|++++|.|..+. .+..++.|+.|++++|.|..++. +..+++|+.
T Consensus 92 ~~~~~l~~l~l~~n~i~---~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N~i~~~~~-~~~l~~L~~ 166 (414)
T KOG0531|consen 92 SKLKSLEALDLYDNKIE---KIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGNLISDISG-LESLKSLKL 166 (414)
T ss_pred ccccceeeeeccccchh---hcccchhhhhcchheecccccccccc-chhhccchhhheeccCcchhccC-Cccchhhhc
Confidence 34556666666665442 12222678999999999999999774 47788889999999999998874 666999999
Q ss_pred EEcCcccccccchh-hhccccCCeEEeeccc
Q 002663 591 LVLARTFVSELPEE-IRNLKKLRSLIVFHYK 620 (895)
Q Consensus 591 L~L~~~~l~~lp~~-i~~l~~L~~L~l~~~~ 620 (895)
+++++|.+..+... ...+.+|+.+.+.++.
T Consensus 167 l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 167 LDLSYNRIVDIENDELSELISLEELDLGGNS 197 (414)
T ss_pred ccCCcchhhhhhhhhhhhccchHHHhccCCc
Confidence 99999998888764 5788899999988753
No 61
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.89 E-value=4.6e-06 Score=96.50 Aligned_cols=139 Identities=23% Similarity=0.248 Sum_probs=64.5
Q ss_pred hcccCCCceeeEEecCCCCCC--cCccccccccCCCeEeecCCCcccccccccCcCCCcEEEcCcccccccc--hhhhcc
Q 002663 533 KSCIANFKLMKVLDLEDSPIN--YLPEGVGNLFNLHLLNARNTKLKIIPKSIGNLLSLEILVLARTFVSELP--EEIRNL 608 (895)
Q Consensus 533 ~~~~~~~~~L~~L~L~~~~~~--~l~~~i~~l~~Lr~L~L~~~~l~~lp~~i~~l~~L~~L~L~~~~l~~lp--~~i~~l 608 (895)
...-.-+|.|+.|.+++-.+. ++..-..++++|+.||+|+++++.+ ..+++|++|+.|.+++-.+..-. ..+.+|
T Consensus 141 ~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L 219 (699)
T KOG3665|consen 141 KKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNL 219 (699)
T ss_pred HHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHHhcc
Confidence 333344555555555554332 2222333445555555555555544 33555555555555443333211 234556
Q ss_pred ccCCeEEeecccccccccccccccccccccccCcccceEEeeeecChHHHHHhhccccCcEEEEEecCCCcchHHHHhhc
Q 002663 609 KKLRSLIVFHYKYITGSIIPTEVAAKIHRGFGSLRGLLVLSTIEADSQVLKELMMLRQLRMLSIRPQNGNGRDLCALIAN 688 (895)
Q Consensus 609 ~~L~~L~l~~~~~~~~~~~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~ 688 (895)
++|++||+|........ .+ -....+.-..+|+|+.|+.+++......+...+..
T Consensus 220 ~~L~vLDIS~~~~~~~~--------~i------------------i~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~s 273 (699)
T KOG3665|consen 220 KKLRVLDISRDKNNDDT--------KI------------------IEQYLECGMVLPELRFLDCSGTDINEEILEELLNS 273 (699)
T ss_pred cCCCeeeccccccccch--------HH------------------HHHHHHhcccCccccEEecCCcchhHHHHHHHHHh
Confidence 66666666553221110 00 00112222345666666666655555555555555
Q ss_pred cCCCCEEEEE
Q 002663 689 LENVETLGVL 698 (895)
Q Consensus 689 l~~L~~L~l~ 698 (895)
.++|+.+...
T Consensus 274 H~~L~~i~~~ 283 (699)
T KOG3665|consen 274 HPNLQQIAAL 283 (699)
T ss_pred CccHhhhhhh
Confidence 5666655544
No 62
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.87 E-value=1.2e-05 Score=78.90 Aligned_cols=178 Identities=19% Similarity=0.182 Sum_probs=112.7
Q ss_pred hccccCcEEEEEecCCC-cchHHHHhhccCCCCEEEEEecCcccccccccCcCCCcCccEEEEeccC---CCCCcccccC
Q 002663 662 MMLRQLRMLSIRPQNGN-GRDLCALIANLENVETLGVLMTSKEEILDLQSLSSPPQHLRYLSLRGNM---KKLPDWILKL 737 (895)
Q Consensus 662 ~~l~~L~~L~l~~~~~~-~~~l~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~---~~lp~~~~~l 737 (895)
..++.++.+++.+|.++ +..+...+.++|.|+.|+++.|..... +..++.+..+|+.|.|.|.. ......+..+
T Consensus 68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~--I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~l 145 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSD--IKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDL 145 (418)
T ss_pred HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCc--cccCcccccceEEEEEcCCCCChhhhhhhhhcc
Confidence 35678889999997543 456778888999999999999876543 33443455699999999863 3455556678
Q ss_pred CCcceEEEEeccCCCcc-----hh-------hhc-----------------cCccccceeeccccCCCe-EEEecCCCcc
Q 002663 738 KNLIGLRLILSGLTEDP-----IS-------ILQ-----------------ALPNLLELMLHGGYDYEL-FHFEAGWFPK 787 (895)
Q Consensus 738 ~~L~~L~L~~~~l~~~~-----~~-------~l~-----------------~l~~L~~L~L~~~~~~~~-~~~~~~~~~~ 787 (895)
|.++.|.++.|++.... .+ .+. -+|++..+-+..|.+... -......||.
T Consensus 146 P~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~ 225 (418)
T KOG2982|consen 146 PKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPS 225 (418)
T ss_pred hhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCc
Confidence 88888888888432210 00 011 145555555555543221 2223445677
Q ss_pred cceeeeccCCCceeeEE--ccCcccccceEEEccCCCCcccCc------cccccccCcEEEEE
Q 002663 788 LRKLVLLNFEAVKLVII--EKGAMPDIRELWSGPCPLLMEIPI------GIEHLRNLELFTFH 842 (895)
Q Consensus 788 L~~L~l~~~~~l~~l~~--~~~~~~~L~~L~l~~c~~l~~lp~------~~~~l~~L~~L~l~ 842 (895)
+.-|+|..+ ++.+|.. ....||+|..|.+.++|....+-. .++++++++.|+=+
T Consensus 226 ~~~LnL~~~-~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 226 LSCLNLGAN-NIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred chhhhhccc-ccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence 777777665 4555532 345688888888888876654322 35667777777644
No 63
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=97.84 E-value=7.8e-05 Score=75.46 Aligned_cols=149 Identities=18% Similarity=0.194 Sum_probs=84.9
Q ss_pred CceeechhhHH---HHHHHHhcCCCCceEEEEEcCCCchhhHHHHHHhccccccCCCCceEEEEeCCCCCHHHHHHHHHH
Q 002663 171 DEVVGIESIKD---KLIDLMVNGRSKSSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRTIIK 247 (895)
Q Consensus 171 ~~~vGr~~~~~---~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~l~~~i~~ 247 (895)
.+.||.+..+. -+.+++.. +...-+.+||++|+||||||+.+.+..+-.. ..||..|-......-.+.|.+
T Consensus 138 ~dyvGQ~hlv~q~gllrs~ieq--~~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~ife 211 (554)
T KOG2028|consen 138 DDYVGQSHLVGQDGLLRSLIEQ--NRIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRDIFE 211 (554)
T ss_pred HHhcchhhhcCcchHHHHHHHc--CCCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHHHHH
Confidence 34555544442 23344433 3477888999999999999999998532222 557877766555455555555
Q ss_pred HHHhccCCCCCCCCccCcCccccHHHHH--HhcCCCCCCcEEEE--EcCchhhhhhhccCCCcceeeccCCChhhHHHHH
Q 002663 248 EFHRLSKHGRDGPDRHAEGPLEGQKDVE--HALLDNKKCSRIIV--TTRHMNVAKFCKSSSSVRIHELETLPPDEAWKLF 323 (895)
Q Consensus 248 ~l~~~~~~~~~~~~~~~~~~L~~~~~l~--~~l~~~~~gs~iiv--TTR~~~v~~~~~~~~~~~~~~l~~L~~~es~~Lf 323 (895)
+-....... .....-..+.+..+.... ..+|...+|+-++| ||.+....-.....+...++-++.|+.++-..++
T Consensus 212 ~aq~~~~l~-krkTilFiDEiHRFNksQQD~fLP~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL 290 (554)
T KOG2028|consen 212 QAQNEKSLT-KRKTILFIDEIHRFNKSQQDTFLPHVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTIL 290 (554)
T ss_pred HHHHHHhhh-cceeEEEeHHhhhhhhhhhhcccceeccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHH
Confidence 433221110 000000012222222222 35777788887776 7777643322111122268999999999998888
Q ss_pred HHh
Q 002663 324 CRK 326 (895)
Q Consensus 324 ~~~ 326 (895)
.+-
T Consensus 291 ~ra 293 (554)
T KOG2028|consen 291 MRA 293 (554)
T ss_pred HHH
Confidence 773
No 64
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.80 E-value=1.8e-05 Score=82.98 Aligned_cols=52 Identities=21% Similarity=0.175 Sum_probs=44.5
Q ss_pred ceEEEEEcCCCchhhHHHHHHhccccccCCCCceEEEEeCCCC--CHHHHHHHHH
Q 002663 194 SSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEY--NKNDLLRTII 246 (895)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~--~~~~l~~~i~ 246 (895)
-+..+|+|++|+||||||++||++.... +|+.++||.+++.. ++.++++.+.
T Consensus 169 GQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIl 222 (416)
T PRK09376 169 GQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVK 222 (416)
T ss_pred CceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhc
Confidence 4578999999999999999999974333 89999999999887 7778888886
No 65
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.77 E-value=4.2e-05 Score=77.14 Aligned_cols=52 Identities=23% Similarity=0.153 Sum_probs=44.6
Q ss_pred ceEEEEEcCCCchhhHHHHHHhccccccCCCCceEEEEeCCC--CCHHHHHHHHH
Q 002663 194 SSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKE--YNKNDLLRTII 246 (895)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~--~~~~~l~~~i~ 246 (895)
...++|.|++|+|||||++.+|++.... +|+.++|+.++.. +++.++++.+.
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~ 69 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVK 69 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhc
Confidence 4689999999999999999999974333 8999999998777 78899998883
No 66
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=97.76 E-value=5.2e-05 Score=83.19 Aligned_cols=82 Identities=16% Similarity=0.163 Sum_probs=61.3
Q ss_pred CCCceeechhhHHHHHHHHhcC--CCCceEEEEEcCCCchhhHHHHHHhcccccc-CCC---CceEEEEeCCCCCHHHHH
Q 002663 169 EDDEVVGIESIKDKLIDLMVNG--RSKSSVVAVVGEGGLGKTTLAGKLFNNEGLK-THF---SCRAWVTVGKEYNKNDLL 242 (895)
Q Consensus 169 ~~~~~vGr~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-~~F---~~~~wv~~~~~~~~~~l~ 242 (895)
.++.++||++++++|..+|... +.....+.|+|++|+|||++++++++..... ... -..+|+++....+...++
T Consensus 13 ~p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~ 92 (365)
T TIGR02928 13 VPDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVL 92 (365)
T ss_pred CCCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHH
Confidence 3457999999999999998642 2334578999999999999999999852110 111 135677777777788899
Q ss_pred HHHHHHHH
Q 002663 243 RTIIKEFH 250 (895)
Q Consensus 243 ~~i~~~l~ 250 (895)
..|++++.
T Consensus 93 ~~i~~~l~ 100 (365)
T TIGR02928 93 VELANQLR 100 (365)
T ss_pred HHHHHHHh
Confidence 99998885
No 67
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.75 E-value=9.7e-05 Score=78.56 Aligned_cols=71 Identities=31% Similarity=0.376 Sum_probs=46.5
Q ss_pred cCCCceeeEEecCCCCCCcCccccccccCCCeEeecC-CCcccccccccCcCCCcEEEcCcc-cccccchhhhccccCCe
Q 002663 536 IANFKLMKVLDLEDSPINYLPEGVGNLFNLHLLNARN-TKLKIIPKSIGNLLSLEILVLART-FVSELPEEIRNLKKLRS 613 (895)
Q Consensus 536 ~~~~~~L~~L~L~~~~~~~l~~~i~~l~~Lr~L~L~~-~~l~~lp~~i~~l~~L~~L~L~~~-~l~~lp~~i~~l~~L~~ 613 (895)
+..+++++.|++++|.++.+|. + ..+|+.|.+++ +.+..+|..+ ..+|++|++++| .+..+|.. |++
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~s------Le~ 116 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPES------VRS 116 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccccc------cce
Confidence 3456778888888887777772 1 23578888876 4566666554 247778888777 66666653 555
Q ss_pred EEee
Q 002663 614 LIVF 617 (895)
Q Consensus 614 L~l~ 617 (895)
|++.
T Consensus 117 L~L~ 120 (426)
T PRK15386 117 LEIK 120 (426)
T ss_pred EEeC
Confidence 5554
No 68
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.71 E-value=2.8e-05 Score=76.11 Aligned_cols=50 Identities=28% Similarity=0.400 Sum_probs=33.7
Q ss_pred ceeechhhHHHHHHHHhc-CCCCceEEEEEcCCCchhhHHHHHHhcccccc
Q 002663 172 EVVGIESIKDKLIDLMVN-GRSKSSVVAVVGEGGLGKTTLAGKLFNNEGLK 221 (895)
Q Consensus 172 ~~vGr~~~~~~l~~~L~~-~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 221 (895)
.||||+++++++...+.. .....+.+.|+|.+|+|||+|.++++......
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 489999999999999942 23446899999999999999999999863333
No 69
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=97.68 E-value=0.0005 Score=74.58 Aligned_cols=153 Identities=16% Similarity=0.176 Sum_probs=83.4
Q ss_pred CceeechhhHHHHHHHHhcCCCCceEEEEEcCCCchhhHHHHHHhccccccCCCC-ceEEEEeCCCC-----------C-
Q 002663 171 DEVVGIESIKDKLIDLMVNGRSKSSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFS-CRAWVTVGKEY-----------N- 237 (895)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~-~~~wv~~~~~~-----------~- 237 (895)
++++|+++.++.+.+++..+. .+.+.++|+.|+||||+|+++.+... ...+. ..++++++.-. +
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~~--~~~lll~Gp~GtGKT~la~~~~~~l~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 91 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSPN--LPHLLVQGPPGSGKTAAVRALARELY-GDPWENNFTEFNVADFFDQGKKYLVEDPRF 91 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCCC--CceEEEECCCCCCHHHHHHHHHHHhc-CcccccceEEechhhhhhcchhhhhcCcch
Confidence 678999999999999887643 45678999999999999999987421 12222 23344443211 0
Q ss_pred -------------HHHHHHHHHHHHHhccCCCCCCCCc---cCcCccc--cHHHHHHhcCCCCCCcEEEEEcCch-hhhh
Q 002663 238 -------------KNDLLRTIIKEFHRLSKHGRDGPDR---HAEGPLE--GQKDVEHALLDNKKCSRIIVTTRHM-NVAK 298 (895)
Q Consensus 238 -------------~~~l~~~i~~~l~~~~~~~~~~~~~---~~~~~L~--~~~~l~~~l~~~~~gs~iivTTR~~-~v~~ 298 (895)
..+..+.+++......... ..... +..+.+. ....+...+....+.+++|+||... .+..
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~~~ 170 (337)
T PRK12402 92 AHFLGTDKRIRSSKIDNFKHVLKEYASYRPLS-ADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLIP 170 (337)
T ss_pred hhhhhhhhhhccchHHHHHHHHHHHHhcCCCC-CCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhCch
Confidence 1122333332222111000 00000 1111121 2233444444444456788777543 2322
Q ss_pred hhccCCCcceeeccCCChhhHHHHHHHhhcC
Q 002663 299 FCKSSSSVRIHELETLPPDEAWKLFCRKAFG 329 (895)
Q Consensus 299 ~~~~~~~~~~~~l~~L~~~es~~Lf~~~a~~ 329 (895)
.... ....+++.+++.++..+++...+-.
T Consensus 171 ~L~s--r~~~v~~~~~~~~~~~~~l~~~~~~ 199 (337)
T PRK12402 171 PIRS--RCLPLFFRAPTDDELVDVLESIAEA 199 (337)
T ss_pred hhcC--CceEEEecCCCHHHHHHHHHHHHHH
Confidence 2221 1257889999999998888876543
No 70
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.66 E-value=2.2e-06 Score=93.82 Aligned_cols=76 Identities=18% Similarity=0.231 Sum_probs=39.4
Q ss_pred eeEEecCCCCCCcCccccccccCCCeEeecCCCcccccccccCcCCCcEEEcCcccccccch-hhhccccCCeEEeecc
Q 002663 542 MKVLDLEDSPINYLPEGVGNLFNLHLLNARNTKLKIIPKSIGNLLSLEILVLARTFVSELPE-EIRNLKKLRSLIVFHY 619 (895)
Q Consensus 542 L~~L~L~~~~~~~l~~~i~~l~~Lr~L~L~~~~l~~lp~~i~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~~ 619 (895)
|.+.+.++|.+..+-+++.-+++|+.|+|++|++...- .+..|++|++|||++|.+..+|. +...+. |..|++.+|
T Consensus 166 L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN 242 (1096)
T KOG1859|consen 166 LATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNN 242 (1096)
T ss_pred HhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhh-heeeeeccc
Confidence 44444445554444455555555666666666555443 35555566666666665555554 122222 555555543
No 71
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=97.65 E-value=0.00052 Score=78.17 Aligned_cols=154 Identities=14% Similarity=0.117 Sum_probs=92.0
Q ss_pred CCceeechhhHHHHHHHHhcCCCCceEEEEEcCCCchhhHHHHHHhcccccc-------------------CCCCceEEE
Q 002663 170 DDEVVGIESIKDKLIDLMVNGRSKSSVVAVVGEGGLGKTTLAGKLFNNEGLK-------------------THFSCRAWV 230 (895)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-------------------~~F~~~~wv 230 (895)
-+++||.+..++.|.+++..+. -.+.+.++|..|+||||+|+.+.+...-. +.|...+++
T Consensus 15 FdEVIGQe~Vv~~L~~aL~~gR-L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~DviEI 93 (830)
T PRK07003 15 FASLVGQEHVVRALTHALDGGR-LHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYVEM 93 (830)
T ss_pred HHHHcCcHHHHHHHHHHHhcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEEEe
Confidence 3679999999999999987653 24567799999999999998777642111 123334555
Q ss_pred EeCCCCCHHHHHHHHHHHHHhccCCCCCCCCc---cCcCccc--cHHHHHHhcCCCCCCcEEEEEcCch-hhhhhhccCC
Q 002663 231 TVGKEYNKNDLLRTIIKEFHRLSKHGRDGPDR---HAEGPLE--GQKDVEHALLDNKKCSRIIVTTRHM-NVAKFCKSSS 304 (895)
Q Consensus 231 ~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~---~~~~~L~--~~~~l~~~l~~~~~gs~iivTTR~~-~v~~~~~~~~ 304 (895)
+.+....+.+ .+.+++........ ..... +..+.|. .|+.+...+..-....++|+||.+. .|......
T Consensus 94 DAas~rgVDd-IReLIe~a~~~P~~--gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIrS-- 168 (830)
T PRK07003 94 DAASNRGVDE-MAALLERAVYAPVD--ARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLS-- 168 (830)
T ss_pred cccccccHHH-HHHHHHHHHhcccc--CCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccchhhh--
Confidence 5444433433 33444443322111 00000 1112222 4566666665555567888777765 33322221
Q ss_pred CcceeeccCCChhhHHHHHHHhhcC
Q 002663 305 SVRIHELETLPPDEAWKLFCRKAFG 329 (895)
Q Consensus 305 ~~~~~~l~~L~~~es~~Lf~~~a~~ 329 (895)
....++++.++.++..+.+.+.+..
T Consensus 169 RCq~f~Fk~Ls~eeIv~~L~~Il~~ 193 (830)
T PRK07003 169 RCLQFNLKQMPAGHIVSHLERILGE 193 (830)
T ss_pred heEEEecCCcCHHHHHHHHHHHHHH
Confidence 1268999999999999888876543
No 72
>PRK13342 recombination factor protein RarA; Reviewed
Probab=97.64 E-value=0.00017 Score=79.84 Aligned_cols=143 Identities=24% Similarity=0.242 Sum_probs=75.5
Q ss_pred CceeechhhHHH---HHHHHhcCCCCceEEEEEcCCCchhhHHHHHHhccccccCCCCceEEEEeCCCCCHHHHHHHHHH
Q 002663 171 DEVVGIESIKDK---LIDLMVNGRSKSSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRTIIK 247 (895)
Q Consensus 171 ~~~vGr~~~~~~---l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~l~~~i~~ 247 (895)
+++||.+..+.. +.+++..+. ...+.|+|++|+||||+|+.+++. .... |+.++......+-.+.+.+
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~~~--~~~ilL~GppGtGKTtLA~~ia~~--~~~~-----~~~l~a~~~~~~~ir~ii~ 82 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEAGR--LSSMILWGPPGTGKTTLARIIAGA--TDAP-----FEALSAVTSGVKDLREVIE 82 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHcCC--CceEEEECCCCCCHHHHHHHHHHH--hCCC-----EEEEecccccHHHHHHHHH
Confidence 568888887666 777776543 567889999999999999999984 3333 2322222222222333444
Q ss_pred HHHhccCCCC-CCCCccCcCccc--cHHHHHHhcCCCCCCcEEEE--EcCchh--hhhhhccCCCcceeeccCCChhhHH
Q 002663 248 EFHRLSKHGR-DGPDRHAEGPLE--GQKDVEHALLDNKKCSRIIV--TTRHMN--VAKFCKSSSSVRIHELETLPPDEAW 320 (895)
Q Consensus 248 ~l~~~~~~~~-~~~~~~~~~~L~--~~~~l~~~l~~~~~gs~iiv--TTR~~~--v~~~~~~~~~~~~~~l~~L~~~es~ 320 (895)
.......... ...-.+..+.+. ..+.+...+. .|..++| ||.+.. +...... ...++.+++++.++.+
T Consensus 83 ~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~aL~S--R~~~~~~~~ls~e~i~ 157 (413)
T PRK13342 83 EARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNPALLS--RAQVFELKPLSEEDIE 157 (413)
T ss_pred HHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccHHHhc--cceeeEeCCCCHHHHH
Confidence 3322110000 000001111111 2223333332 3455555 344432 2111111 1268999999999999
Q ss_pred HHHHHhh
Q 002663 321 KLFCRKA 327 (895)
Q Consensus 321 ~Lf~~~a 327 (895)
+++.+.+
T Consensus 158 ~lL~~~l 164 (413)
T PRK13342 158 QLLKRAL 164 (413)
T ss_pred HHHHHHH
Confidence 9998765
No 73
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.63 E-value=0.00068 Score=76.33 Aligned_cols=154 Identities=17% Similarity=0.131 Sum_probs=90.3
Q ss_pred CCceeechhhHHHHHHHHhcCCCCceEEEEEcCCCchhhHHHHHHhccccc-------------------cCCCCceEEE
Q 002663 170 DDEVVGIESIKDKLIDLMVNGRSKSSVVAVVGEGGLGKTTLAGKLFNNEGL-------------------KTHFSCRAWV 230 (895)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~-------------------~~~F~~~~wv 230 (895)
-+++||.+...+.+.+++..+. -.+.+.++|+.|+||||+|+.+++...- .+.|...+.+
T Consensus 14 FddVIGQe~vv~~L~~aI~~gr-l~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDviEI 92 (702)
T PRK14960 14 FNELVGQNHVSRALSSALERGR-LHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLIEI 92 (702)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCceEEe
Confidence 4679999999999999998653 2468899999999999999988774211 1122234445
Q ss_pred EeCCCCCHHHHHHHHHHHHHhccCCCCCCCCc---cCcCccc--cHHHHHHhcCCCCCCcEEEEEcCch-hhhhhhccCC
Q 002663 231 TVGKEYNKNDLLRTIIKEFHRLSKHGRDGPDR---HAEGPLE--GQKDVEHALLDNKKCSRIIVTTRHM-NVAKFCKSSS 304 (895)
Q Consensus 231 ~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~---~~~~~L~--~~~~l~~~l~~~~~gs~iivTTR~~-~v~~~~~~~~ 304 (895)
+.+....+.++ +.++......... ..... +..+.|. .++.+...+.....+.++|++|.+. .+......
T Consensus 93 DAAs~~~VddI-Reli~~~~y~P~~--gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~TIlS-- 167 (702)
T PRK14960 93 DAASRTKVEDT-RELLDNVPYAPTQ--GRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVIS-- 167 (702)
T ss_pred cccccCCHHHH-HHHHHHHhhhhhc--CCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhHHHHH--
Confidence 54433344433 4444443222111 00000 1111121 4445555555555566777777653 23222111
Q ss_pred CcceeeccCCChhhHHHHHHHhhcC
Q 002663 305 SVRIHELETLPPDEAWKLFCRKAFG 329 (895)
Q Consensus 305 ~~~~~~l~~L~~~es~~Lf~~~a~~ 329 (895)
....+++++++.++..+.+.+.+-.
T Consensus 168 RCq~feFkpLs~eEI~k~L~~Il~k 192 (702)
T PRK14960 168 RCLQFTLRPLAVDEITKHLGAILEK 192 (702)
T ss_pred hhheeeccCCCHHHHHHHHHHHHHH
Confidence 1268999999999998888776543
No 74
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.62 E-value=1.3e-05 Score=77.67 Aligned_cols=249 Identities=19% Similarity=0.101 Sum_probs=131.2
Q ss_pred CCCceeeEEecCCCCCC-----cCccccccccCCCeEeecC--CCc-c-cccc-------cccCcCCCcEEEcCccccc-
Q 002663 537 ANFKLMKVLDLEDSPIN-----YLPEGVGNLFNLHLLNARN--TKL-K-IIPK-------SIGNLLSLEILVLARTFVS- 599 (895)
Q Consensus 537 ~~~~~L~~L~L~~~~~~-----~l~~~i~~l~~Lr~L~L~~--~~l-~-~lp~-------~i~~l~~L~~L~L~~~~l~- 599 (895)
.-+..+..++||+|.|. .+...|.+-.+|+..+++. +.. . ++|+ .+-++++|+..+||.|.+.
T Consensus 27 ~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~ 106 (388)
T COG5238 27 EMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS 106 (388)
T ss_pred HhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence 34778899999999987 4567777888899999886 221 1 3443 3457889999999988544
Q ss_pred ccch----hhhccccCCeEEeecccccccccccccccccccccccCcccceEEeeeecChHHHHHhhccccCcEEEEEec
Q 002663 600 ELPE----EIRNLKKLRSLIVFHYKYITGSIIPTEVAAKIHRGFGSLRGLLVLSTIEADSQVLKELMMLRQLRMLSIRPQ 675 (895)
Q Consensus 600 ~lp~----~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~~ 675 (895)
..|. -|.+-..|.||.+++|..-+ ..+.++... |+.|. .-.....-+.|+......|
T Consensus 107 ~~~e~L~d~is~~t~l~HL~l~NnGlGp------~aG~rigka------l~~la-------~nKKaa~kp~Le~vicgrN 167 (388)
T COG5238 107 EFPEELGDLISSSTDLVHLKLNNNGLGP------IAGGRIGKA------LFHLA-------YNKKAADKPKLEVVICGRN 167 (388)
T ss_pred ccchHHHHHHhcCCCceeEEeecCCCCc------cchhHHHHH------HHHHH-------HHhhhccCCCceEEEeccc
Confidence 3333 35567788899888763210 000111100 01000 0112234456666666654
Q ss_pred CC---CcchHHHHhhccCCCCEEEEEecCcccccccccCcCCCcCccEEEEeccCCCCCcccccCCCcceEEEEeccCCC
Q 002663 676 NG---NGRDLCALIANLENVETLGVLMTSKEEILDLQSLSSPPQHLRYLSLRGNMKKLPDWILKLKNLIGLRLILSGLTE 752 (895)
Q Consensus 676 ~~---~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~lp~~~~~l~~L~~L~L~~~~l~~ 752 (895)
.+ +.......+....+|+.+.+..|++.... + .+| .-..+..+.+|+.|+|..|.++.
T Consensus 168 Rlengs~~~~a~~l~sh~~lk~vki~qNgIrpeg-v----------~~L--------~~~gl~y~~~LevLDlqDNtft~ 228 (388)
T COG5238 168 RLENGSKELSAALLESHENLKEVKIQQNGIRPEG-V----------TML--------AFLGLFYSHSLEVLDLQDNTFTL 228 (388)
T ss_pred hhccCcHHHHHHHHHhhcCceeEEeeecCcCcch-h----------HHH--------HHHHHHHhCcceeeeccccchhh
Confidence 22 22233344444456777777766543210 0 000 00012234555555555555443
Q ss_pred cchh----hhccCccccceeeccccCCCeEE------EecCCCcccceeeeccCCCceeeE-------EccCcccccceE
Q 002663 753 DPIS----ILQALPNLLELMLHGGYDYELFH------FEAGWFPKLRKLVLLNFEAVKLVI-------IEKGAMPDIREL 815 (895)
Q Consensus 753 ~~~~----~l~~l~~L~~L~L~~~~~~~~~~------~~~~~~~~L~~L~l~~~~~l~~l~-------~~~~~~~~L~~L 815 (895)
.... .+...+.|+.|.+..|.....-. +....+|+|..|-+.+|..-..+. +..+++|-|..|
T Consensus 229 ~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~l 308 (388)
T COG5238 229 EGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDL 308 (388)
T ss_pred hhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHH
Confidence 3221 22334455666655554332111 112245666666666654332221 234578888888
Q ss_pred EEccCCCC
Q 002663 816 WSGPCPLL 823 (895)
Q Consensus 816 ~l~~c~~l 823 (895)
.+.+|..-
T Consensus 309 e~ngNr~~ 316 (388)
T COG5238 309 ERNGNRIK 316 (388)
T ss_pred HHccCcch
Confidence 88888743
No 75
>PLN03025 replication factor C subunit; Provisional
Probab=97.59 E-value=0.00079 Score=71.86 Aligned_cols=154 Identities=16% Similarity=0.166 Sum_probs=82.5
Q ss_pred CCceeechhhHHHHHHHHhcCCCCceEEEEEcCCCchhhHHHHHHhccccccCCCCc-eEEEEeCCCCCHHHHHHHHHHH
Q 002663 170 DDEVVGIESIKDKLIDLMVNGRSKSSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSC-RAWVTVGKEYNKNDLLRTIIKE 248 (895)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~-~~wv~~~~~~~~~~l~~~i~~~ 248 (895)
-++++|-++.++.+..++..+. .+-+-++|++|+||||+|+.+++.. ....|.. ++-++.+...... ..+.+++.
T Consensus 12 l~~~~g~~~~~~~L~~~~~~~~--~~~lll~Gp~G~GKTtla~~la~~l-~~~~~~~~~~eln~sd~~~~~-~vr~~i~~ 87 (319)
T PLN03025 12 LDDIVGNEDAVSRLQVIARDGN--MPNLILSGPPGTGKTTSILALAHEL-LGPNYKEAVLELNASDDRGID-VVRNKIKM 87 (319)
T ss_pred HHHhcCcHHHHHHHHHHHhcCC--CceEEEECCCCCCHHHHHHHHHHHH-hcccCccceeeecccccccHH-HHHHHHHH
Confidence 3678999999999988876543 4457799999999999999998741 1222321 2222333333333 33333333
Q ss_pred HHhccCCCC-CCCCc---cCcCccc--cHHHHHHhcCCCCCCcEEEEEcCch-hhhhhhccCCCcceeeccCCChhhHHH
Q 002663 249 FHRLSKHGR-DGPDR---HAEGPLE--GQKDVEHALLDNKKCSRIIVTTRHM-NVAKFCKSSSSVRIHELETLPPDEAWK 321 (895)
Q Consensus 249 l~~~~~~~~-~~~~~---~~~~~L~--~~~~l~~~l~~~~~gs~iivTTR~~-~v~~~~~~~~~~~~~~l~~L~~~es~~ 321 (895)
+........ ..... +..+.+. ....+...+......+++|+++... .+......- ...+++++++.++..+
T Consensus 88 ~~~~~~~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SR--c~~i~f~~l~~~~l~~ 165 (319)
T PLN03025 88 FAQKKVTLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSR--CAIVRFSRLSDQEILG 165 (319)
T ss_pred HHhccccCCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHh--hhcccCCCCCHHHHHH
Confidence 322110000 00000 0011111 2233333343334456777776542 222211111 1578999999999988
Q ss_pred HHHHhhcC
Q 002663 322 LFCRKAFG 329 (895)
Q Consensus 322 Lf~~~a~~ 329 (895)
.+...+-.
T Consensus 166 ~L~~i~~~ 173 (319)
T PLN03025 166 RLMKVVEA 173 (319)
T ss_pred HHHHHHHH
Confidence 88877643
No 76
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.59 E-value=9.9e-07 Score=96.52 Aligned_cols=85 Identities=20% Similarity=0.214 Sum_probs=68.2
Q ss_pred hcccCCCceeeEEecCCCCCCcCccccccccCCCeEeecCCCcccccccccCcCCCcEEEcCcccccccchhhhccccCC
Q 002663 533 KSCIANFKLMKVLDLEDSPINYLPEGVGNLFNLHLLNARNTKLKIIPKSIGNLLSLEILVLARTFVSELPEEIRNLKKLR 612 (895)
Q Consensus 533 ~~~~~~~~~L~~L~L~~~~~~~l~~~i~~l~~Lr~L~L~~~~l~~lp~~i~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~ 612 (895)
...+.-++.|+.|||+.|.+...- .+..|++|+.|||++|.+..+|.--..-.+|+.|++++|.++.|- ++.+|.+|+
T Consensus 180 D~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l~tL~-gie~LksL~ 257 (1096)
T KOG1859|consen 180 DESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNALTTLR-GIENLKSLY 257 (1096)
T ss_pred HHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhhheeeeecccHHHhhh-hHHhhhhhh
Confidence 344555778999999999988764 778899999999999999988853222235999999999888885 588999999
Q ss_pred eEEeecc
Q 002663 613 SLIVFHY 619 (895)
Q Consensus 613 ~L~l~~~ 619 (895)
+||++.|
T Consensus 258 ~LDlsyN 264 (1096)
T KOG1859|consen 258 GLDLSYN 264 (1096)
T ss_pred ccchhHh
Confidence 9999875
No 77
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.53 E-value=0.0012 Score=71.56 Aligned_cols=154 Identities=14% Similarity=0.136 Sum_probs=89.1
Q ss_pred CCceeechhhHHHHHHHHhcCCCCceEEEEEcCCCchhhHHHHHHhccccccC-------------------CCCceEEE
Q 002663 170 DDEVVGIESIKDKLIDLMVNGRSKSSVVAVVGEGGLGKTTLAGKLFNNEGLKT-------------------HFSCRAWV 230 (895)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~-------------------~F~~~~wv 230 (895)
-+++||-+..++.+.+.+..+. -.+.+.++|+.|+||||+|+.+.+...-.. .+....++
T Consensus 15 ~~~iiGq~~~~~~l~~~~~~~~-~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~~~~ 93 (363)
T PRK14961 15 FRDIIGQKHIVTAISNGLSLGR-IHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDLIEI 93 (363)
T ss_pred hhhccChHHHHHHHHHHHHcCC-CCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceEEe
Confidence 3678999999999999987643 346789999999999999999987421100 11122333
Q ss_pred EeCCCCCHHHHHHHHHHHHHhccCCCCCCCCc---cCcCccc--cHHHHHHhcCCCCCCcEEEEEcCch-hhhhhhccCC
Q 002663 231 TVGKEYNKNDLLRTIIKEFHRLSKHGRDGPDR---HAEGPLE--GQKDVEHALLDNKKCSRIIVTTRHM-NVAKFCKSSS 304 (895)
Q Consensus 231 ~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~---~~~~~L~--~~~~l~~~l~~~~~gs~iivTTR~~-~v~~~~~~~~ 304 (895)
+.+....+. -.+.+.+.+...... ..... +..+.+. .++.+...+.......++|++|.+. .+......
T Consensus 94 ~~~~~~~v~-~ir~i~~~~~~~p~~--~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~tI~S-- 168 (363)
T PRK14961 94 DAASRTKVE-EMREILDNIYYSPSK--SRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTILS-- 168 (363)
T ss_pred cccccCCHH-HHHHHHHHHhcCccc--CCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHHHHh--
Confidence 332222333 344555544321100 00000 1112222 4555655665555566777766543 34333221
Q ss_pred CcceeeccCCChhhHHHHHHHhhcC
Q 002663 305 SVRIHELETLPPDEAWKLFCRKAFG 329 (895)
Q Consensus 305 ~~~~~~l~~L~~~es~~Lf~~~a~~ 329 (895)
....+++++++.++..+.+...+-.
T Consensus 169 Rc~~~~~~~l~~~el~~~L~~~~~~ 193 (363)
T PRK14961 169 RCLQFKLKIISEEKIFNFLKYILIK 193 (363)
T ss_pred hceEEeCCCCCHHHHHHHHHHHHHH
Confidence 1268999999999998888776533
No 78
>PRK08727 hypothetical protein; Validated
Probab=97.52 E-value=0.00075 Score=68.22 Aligned_cols=143 Identities=15% Similarity=0.096 Sum_probs=74.4
Q ss_pred eeechhhHHHHHHHHhcCCCCceEEEEEcCCCchhhHHHHHHhccccccCCCCceEEEEeCCCCCHHHHHHHHHHHHHhc
Q 002663 173 VVGIESIKDKLIDLMVNGRSKSSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRTIIKEFHRL 252 (895)
Q Consensus 173 ~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~l~~~i~~~l~~~ 252 (895)
++|=...+..+..+... .....+.|+|..|+|||+||+++++. .......+.|+++.+.. .-...+++.+...
T Consensus 22 ~~~~~n~~~~~~~~~~~--~~~~~l~l~G~~G~GKThL~~a~~~~--~~~~~~~~~y~~~~~~~---~~~~~~~~~l~~~ 94 (233)
T PRK08727 22 IAAPDGLLAQLQALAAG--QSSDWLYLSGPAGTGKTHLALALCAA--AEQAGRSSAYLPLQAAA---GRLRDALEALEGR 94 (233)
T ss_pred cCCcHHHHHHHHHHHhc--cCCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEeHHHhh---hhHHHHHHHHhcC
Confidence 33444444444443322 22356999999999999999999884 33334456677643311 1112222222211
Q ss_pred cCCCCCCCCccCcCccc---cHHH-HHHhcCC-CCCCcEEEEEcCch---------hhhhhhccCCCcceeeccCCChhh
Q 002663 253 SKHGRDGPDRHAEGPLE---GQKD-VEHALLD-NKKCSRIIVTTRHM---------NVAKFCKSSSSVRIHELETLPPDE 318 (895)
Q Consensus 253 ~~~~~~~~~~~~~~~L~---~~~~-l~~~l~~-~~~gs~iivTTR~~---------~v~~~~~~~~~~~~~~l~~L~~~e 318 (895)
.- -.. +..+.+. .|.. +-..+.. ..+|..||+||+.. ++...+... .++++++++.++
T Consensus 95 dl---LiI--DDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~---~~~~l~~~~~e~ 166 (233)
T PRK08727 95 SL---VAL--DGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQC---IRIGLPVLDDVA 166 (233)
T ss_pred CE---EEE--eCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcC---ceEEecCCCHHH
Confidence 00 000 0011111 1221 1111111 12356799999852 222222222 589999999999
Q ss_pred HHHHHHHhhcCC
Q 002663 319 AWKLFCRKAFGP 330 (895)
Q Consensus 319 s~~Lf~~~a~~~ 330 (895)
-.+++.+++...
T Consensus 167 ~~~iL~~~a~~~ 178 (233)
T PRK08727 167 RAAVLRERAQRR 178 (233)
T ss_pred HHHHHHHHHHHc
Confidence 999999877543
No 79
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=97.50 E-value=0.0016 Score=69.97 Aligned_cols=154 Identities=19% Similarity=0.224 Sum_probs=84.3
Q ss_pred CCceeechhhHHHHHHHHhcCCCCceEEEEEcCCCchhhHHHHHHhccccccCCCCceEEEEe--CCCCCHHHHHHHHHH
Q 002663 170 DDEVVGIESIKDKLIDLMVNGRSKSSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTV--GKEYNKNDLLRTIIK 247 (895)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~--~~~~~~~~l~~~i~~ 247 (895)
-++++|+++.++.+..++..+. .+.+.|+|..|+||||+|+.+.+.. ....+.. .++.+ +...... .....+.
T Consensus 16 ~~~~~g~~~~~~~l~~~i~~~~--~~~~ll~G~~G~GKt~~~~~l~~~l-~~~~~~~-~~i~~~~~~~~~~~-~~~~~i~ 90 (319)
T PRK00440 16 LDEIVGQEEIVERLKSYVKEKN--MPHLLFAGPPGTGKTTAALALAREL-YGEDWRE-NFLELNASDERGID-VIRNKIK 90 (319)
T ss_pred HHHhcCcHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHHHH-cCCcccc-ceEEeccccccchH-HHHHHHH
Confidence 3568999999999999997643 4457999999999999999998842 1112211 23333 2222222 2222323
Q ss_pred HHHhccCCCCCCCCc---cCcCccc--cHHHHHHhcCCCCCCcEEEEEcCch-hhhhhhccCCCcceeeccCCChhhHHH
Q 002663 248 EFHRLSKHGRDGPDR---HAEGPLE--GQKDVEHALLDNKKCSRIIVTTRHM-NVAKFCKSSSSVRIHELETLPPDEAWK 321 (895)
Q Consensus 248 ~l~~~~~~~~~~~~~---~~~~~L~--~~~~l~~~l~~~~~gs~iivTTR~~-~v~~~~~~~~~~~~~~l~~L~~~es~~ 321 (895)
++............. +..+.+. ..+.+...+....+.+++|+++... .+...... ....+++++++.++...
T Consensus 91 ~~~~~~~~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~s--r~~~~~~~~l~~~ei~~ 168 (319)
T PRK00440 91 EFARTAPVGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQS--RCAVFRFSPLKKEAVAE 168 (319)
T ss_pred HHHhcCCCCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHH--HhheeeeCCCCHHHHHH
Confidence 322211110000000 1111221 2344555555444556777776432 22222111 11578999999999988
Q ss_pred HHHHhhcCC
Q 002663 322 LFCRKAFGP 330 (895)
Q Consensus 322 Lf~~~a~~~ 330 (895)
.+...+-..
T Consensus 169 ~l~~~~~~~ 177 (319)
T PRK00440 169 RLRYIAENE 177 (319)
T ss_pred HHHHHHHHc
Confidence 888776443
No 80
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.43 E-value=0.0018 Score=75.47 Aligned_cols=153 Identities=14% Similarity=0.129 Sum_probs=88.0
Q ss_pred CCceeechhhHHHHHHHHhcCCCCceEEEEEcCCCchhhHHHHHHhccccccC-------------------CCCceEEE
Q 002663 170 DDEVVGIESIKDKLIDLMVNGRSKSSVVAVVGEGGLGKTTLAGKLFNNEGLKT-------------------HFSCRAWV 230 (895)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~-------------------~F~~~~wv 230 (895)
-.++||-+..++.+.+++..+. -.+.+.++|+.|+||||+|+.+++...-.. .|...+++
T Consensus 15 FddIIGQe~Iv~~LknaI~~~r-l~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~DviEi 93 (944)
T PRK14949 15 FEQMVGQSHVLHALTNALTQQR-LHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLIEV 93 (944)
T ss_pred HHHhcCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEEEe
Confidence 3679999999999999987653 235678999999999999999997521111 12122334
Q ss_pred EeCCCCCHHHHHHHHHHHHHhccCCCCCCCCc---cCcCcc--ccHHHHHHhcCCCCCCcEEEEEcCc-hhhhhhhccCC
Q 002663 231 TVGKEYNKNDLLRTIIKEFHRLSKHGRDGPDR---HAEGPL--EGQKDVEHALLDNKKCSRIIVTTRH-MNVAKFCKSSS 304 (895)
Q Consensus 231 ~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~---~~~~~L--~~~~~l~~~l~~~~~gs~iivTTR~-~~v~~~~~~~~ 304 (895)
+......+. ..+.|.+.+...... ..... +..+.| ..++.+...+..-....++|++|.+ ..+......
T Consensus 94 dAas~~kVD-dIReLie~v~~~P~~--gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl~TIlS-- 168 (944)
T PRK14949 94 DAASRTKVD-DTRELLDNVQYRPSR--GRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLS-- 168 (944)
T ss_pred ccccccCHH-HHHHHHHHHHhhhhc--CCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhchHHHHH--
Confidence 332222333 345565554322111 00000 111111 1444555555544445666665544 444433221
Q ss_pred CcceeeccCCChhhHHHHHHHhhc
Q 002663 305 SVRIHELETLPPDEAWKLFCRKAF 328 (895)
Q Consensus 305 ~~~~~~l~~L~~~es~~Lf~~~a~ 328 (895)
....|++++|+.++..+.+.+.+-
T Consensus 169 RCq~f~fkpLs~eEI~~~L~~il~ 192 (944)
T PRK14949 169 RCLQFNLKSLTQDEIGTQLNHILT 192 (944)
T ss_pred hheEEeCCCCCHHHHHHHHHHHHH
Confidence 126899999999999988877553
No 81
>PRK08084 DNA replication initiation factor; Provisional
Probab=97.42 E-value=0.0011 Score=67.02 Aligned_cols=145 Identities=13% Similarity=0.090 Sum_probs=75.1
Q ss_pred CCceeechh-hHHHHHHHHhcCCCCceEEEEEcCCCchhhHHHHHHhccccccCCCCceEEEEeCCCCCHHHHHHHHHHH
Q 002663 170 DDEVVGIES-IKDKLIDLMVNGRSKSSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRTIIKE 248 (895)
Q Consensus 170 ~~~~vGr~~-~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~l~~~i~~~ 248 (895)
++.++|-.. .+..+.++... .+.+.+.|+|+.|+|||+||+++++. .......+.|+++..... ...++.+.
T Consensus 22 d~f~~~~n~~a~~~l~~~~~~--~~~~~l~l~Gp~G~GKThLl~a~~~~--~~~~~~~v~y~~~~~~~~---~~~~~~~~ 94 (235)
T PRK08084 22 ASFYPGDNDSLLAALQNALRQ--EHSGYIYLWSREGAGRSHLLHAACAE--LSQRGRAVGYVPLDKRAW---FVPEVLEG 94 (235)
T ss_pred cccccCccHHHHHHHHHHHhC--CCCCeEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEEHHHHhh---hhHHHHHH
Confidence 444557333 23334444332 23468899999999999999999984 333334456766543211 11122222
Q ss_pred HHhccCCCCCCCCccCcCcc---ccHHHH-HHhcCC-CCCC-cEEEEEcCch---------hhhhhhccCCCcceeeccC
Q 002663 249 FHRLSKHGRDGPDRHAEGPL---EGQKDV-EHALLD-NKKC-SRIIVTTRHM---------NVAKFCKSSSSVRIHELET 313 (895)
Q Consensus 249 l~~~~~~~~~~~~~~~~~~L---~~~~~l-~~~l~~-~~~g-s~iivTTR~~---------~v~~~~~~~~~~~~~~l~~ 313 (895)
+... +..-.+..+.+ ..|+.. ...+.. ...| .++|+||+.. ++...+... .++++++
T Consensus 95 ~~~~-----dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g---~~~~l~~ 166 (235)
T PRK08084 95 MEQL-----SLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWG---QIYKLQP 166 (235)
T ss_pred hhhC-----CEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCC---ceeeecC
Confidence 2110 00000000011 123211 111111 1123 3799999754 333344333 6899999
Q ss_pred CChhhHHHHHHHhhcC
Q 002663 314 LPPDEAWKLFCRKAFG 329 (895)
Q Consensus 314 L~~~es~~Lf~~~a~~ 329 (895)
++.++-.+++.++|..
T Consensus 167 ~~~~~~~~~l~~~a~~ 182 (235)
T PRK08084 167 LSDEEKLQALQLRARL 182 (235)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999887644
No 82
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=97.42 E-value=0.0039 Score=71.16 Aligned_cols=156 Identities=15% Similarity=0.127 Sum_probs=86.4
Q ss_pred CCceeechhhHHHHHHHHhcCCCCceEEEEEcCCCchhhHHHHHHhcccccc-------------------CCCCceEEE
Q 002663 170 DDEVVGIESIKDKLIDLMVNGRSKSSVVAVVGEGGLGKTTLAGKLFNNEGLK-------------------THFSCRAWV 230 (895)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-------------------~~F~~~~wv 230 (895)
-+++||.+..++.|.+++..+. -.+.+.++|+.|+||||+|+.+.+...-. ..|...+.+
T Consensus 15 FddIIGQe~vv~~L~~ai~~~r-l~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~DvlEi 93 (709)
T PRK08691 15 FADLVGQEHVVKALQNALDEGR-LHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDLLEI 93 (709)
T ss_pred HHHHcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccceEEE
Confidence 4689999999999999998653 24678999999999999999887731100 112222344
Q ss_pred EeCCCCCHHHHHHHHHHHHHhccCCC-CCCCCccCcCccc--cHHHHHHhcCCCCCCcEEEEEcCch-hhhhhhccCCCc
Q 002663 231 TVGKEYNKNDLLRTIIKEFHRLSKHG-RDGPDRHAEGPLE--GQKDVEHALLDNKKCSRIIVTTRHM-NVAKFCKSSSSV 306 (895)
Q Consensus 231 ~~~~~~~~~~l~~~i~~~l~~~~~~~-~~~~~~~~~~~L~--~~~~l~~~l~~~~~gs~iivTTR~~-~v~~~~~~~~~~ 306 (895)
+......+. .++++++......... ...--.+..+.+. ....+...+.......++|++|.+. .+...... ..
T Consensus 94 daAs~~gVd-~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~~TIrS--RC 170 (709)
T PRK08691 94 DAASNTGID-NIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLS--RC 170 (709)
T ss_pred eccccCCHH-HHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccchHHHH--HH
Confidence 434433433 3444544332111000 0000001111122 2344455554444456677666543 33322211 11
Q ss_pred ceeeccCCChhhHHHHHHHhhcC
Q 002663 307 RIHELETLPPDEAWKLFCRKAFG 329 (895)
Q Consensus 307 ~~~~l~~L~~~es~~Lf~~~a~~ 329 (895)
..++++.++.++....+.+.+-.
T Consensus 171 ~~f~f~~Ls~eeI~~~L~~Il~k 193 (709)
T PRK08691 171 LQFVLRNMTAQQVADHLAHVLDS 193 (709)
T ss_pred hhhhcCCCCHHHHHHHHHHHHHH
Confidence 56888899999988888776543
No 83
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=97.41 E-value=0.00094 Score=72.78 Aligned_cols=162 Identities=13% Similarity=0.095 Sum_probs=83.4
Q ss_pred CCCCceeechhhHHHHHHHHhcC--C---------CCceEEEEEcCCCchhhHHHHHHhccccccCCCCceEEEEeCCC-
Q 002663 168 VEDDEVVGIESIKDKLIDLMVNG--R---------SKSSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKE- 235 (895)
Q Consensus 168 ~~~~~~vGr~~~~~~l~~~L~~~--~---------~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~- 235 (895)
+..+++.|+++.++++.+.+... . ...+-|.++|++|+|||++|+++++. ....|-..........
T Consensus 119 ~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~--l~~~~~~v~~~~l~~~~ 196 (364)
T TIGR01242 119 VSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE--TNATFIRVVGSELVRKY 196 (364)
T ss_pred CCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--CCCCEEecchHHHHHHh
Confidence 44568999999999999887531 1 12456899999999999999999984 4433321110000000
Q ss_pred C-CHHHHHHHHHHHHHhccCC---CCCCCC---cc------CcCc-cccHHHHHHhcCC--CCCCcEEEEEcCchhhhhh
Q 002663 236 Y-NKNDLLRTIIKEFHRLSKH---GRDGPD---RH------AEGP-LEGQKDVEHALLD--NKKCSRIIVTTRHMNVAKF 299 (895)
Q Consensus 236 ~-~~~~l~~~i~~~l~~~~~~---~~~~~~---~~------~~~~-L~~~~~l~~~l~~--~~~gs~iivTTR~~~v~~~ 299 (895)
. ......+.+.+........ .++... .. .... -..+..+...+.. ...+.+||.||...+....
T Consensus 197 ~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ld~ 276 (364)
T TIGR01242 197 IGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDILDP 276 (364)
T ss_pred hhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhCCh
Confidence 0 1112222222221110000 000000 00 0000 0012222222221 1235778888876433221
Q ss_pred -h-ccCCCcceeeccCCChhhHHHHHHHhhcCCC
Q 002663 300 -C-KSSSSVRIHELETLPPDEAWKLFCRKAFGPS 331 (895)
Q Consensus 300 -~-~~~~~~~~~~l~~L~~~es~~Lf~~~a~~~~ 331 (895)
. ........++++..+.++..++|..++.+..
T Consensus 277 al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~ 310 (364)
T TIGR01242 277 ALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMK 310 (364)
T ss_pred hhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCC
Confidence 1 1111236789999999999999999876554
No 84
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=97.40 E-value=0.0017 Score=69.25 Aligned_cols=150 Identities=21% Similarity=0.292 Sum_probs=94.3
Q ss_pred CceeechhhHHHHHHHHhcCCCCceEEEEEcCCCchhhHHHHHHhccc----cccCCCCceEEEE-eCCCCCHHHHHHHH
Q 002663 171 DEVVGIESIKDKLIDLMVNGRSKSSVVAVVGEGGLGKTTLAGKLFNNE----GLKTHFSCRAWVT-VGKEYNKNDLLRTI 245 (895)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~----~~~~~F~~~~wv~-~~~~~~~~~l~~~i 245 (895)
++++|-+..++.+.+.+..+. -.+...++|+.|+||||+|+.++... ....+.|...|.. .+....+.+ .+++
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~-~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~-ir~~ 81 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNR-FSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD-IRNI 81 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCC-CCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-HHHH
Confidence 467899999999999987643 34678899999999999999998731 1234556555554 234444545 3344
Q ss_pred HHHHHhccCCCCCCCCc---cCcCc--cccHHHHHHhcCCCCCCcEEEEEcCchh-hhhhhccCCCcceeeccCCChhhH
Q 002663 246 IKEFHRLSKHGRDGPDR---HAEGP--LEGQKDVEHALLDNKKCSRIIVTTRHMN-VAKFCKSSSSVRIHELETLPPDEA 319 (895)
Q Consensus 246 ~~~l~~~~~~~~~~~~~---~~~~~--L~~~~~l~~~l~~~~~gs~iivTTR~~~-v~~~~~~~~~~~~~~l~~L~~~es 319 (895)
.+.+...... ..... +..+. -..++.+...+..-.+++.+|++|.+.+ +...... ....+++.++++++.
T Consensus 82 ~~~~~~~p~~--~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~S--Rc~~~~~~~~~~~~~ 157 (313)
T PRK05564 82 IEEVNKKPYE--GDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKS--RCQIYKLNRLSKEEI 157 (313)
T ss_pred HHHHhcCccc--CCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHh--hceeeeCCCcCHHHH
Confidence 4544332111 00000 00111 2267778888887778899998887653 2222222 126899999999998
Q ss_pred HHHHHHh
Q 002663 320 WKLFCRK 326 (895)
Q Consensus 320 ~~Lf~~~ 326 (895)
...+...
T Consensus 158 ~~~l~~~ 164 (313)
T PRK05564 158 EKFISYK 164 (313)
T ss_pred HHHHHHH
Confidence 8777654
No 85
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=97.40 E-value=0.0024 Score=71.42 Aligned_cols=155 Identities=18% Similarity=0.111 Sum_probs=91.2
Q ss_pred CCceeechhhHHHHHHHHhcCCCCceEEEEEcCCCchhhHHHHHHhccccccCC-----------------------CCc
Q 002663 170 DDEVVGIESIKDKLIDLMVNGRSKSSVVAVVGEGGLGKTTLAGKLFNNEGLKTH-----------------------FSC 226 (895)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~-----------------------F~~ 226 (895)
-.++||-+..++.+...+..+. -.+.+.++|+.|+||||+|+.+++...-... ...
T Consensus 20 f~dliGq~~vv~~L~~ai~~~r-i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~h~D 98 (507)
T PRK06645 20 FAELQGQEVLVKVLSYTILNDR-LAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHNHPD 98 (507)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCCCCc
Confidence 3678999999999988877643 2467899999999999999999874211100 012
Q ss_pred eEEEEeCCCCCHHHHHHHHHHHHHhccCCCCCCCCc---cCcCcc--ccHHHHHHhcCCCCCCcEEEE-EcCchhhhhhh
Q 002663 227 RAWVTVGKEYNKNDLLRTIIKEFHRLSKHGRDGPDR---HAEGPL--EGQKDVEHALLDNKKCSRIIV-TTRHMNVAKFC 300 (895)
Q Consensus 227 ~~wv~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~---~~~~~L--~~~~~l~~~l~~~~~gs~iiv-TTR~~~v~~~~ 300 (895)
++.++......+.++ +.+++........ ..... +..+.+ ..|+.+...+....+.+.+|+ ||+...+....
T Consensus 99 v~eidaas~~~vd~I-r~iie~a~~~P~~--~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~~tI 175 (507)
T PRK06645 99 IIEIDAASKTSVDDI-RRIIESAEYKPLQ--GKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPATI 175 (507)
T ss_pred EEEeeccCCCCHHHH-HHHHHHHHhcccc--CCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhhHHH
Confidence 233333333444443 3444443322110 00000 111122 246666666666555666654 55555555443
Q ss_pred ccCCCcceeeccCCChhhHHHHHHHhhcCC
Q 002663 301 KSSSSVRIHELETLPPDEAWKLFCRKAFGP 330 (895)
Q Consensus 301 ~~~~~~~~~~l~~L~~~es~~Lf~~~a~~~ 330 (895)
... ...+++++++.++..+.+.+.+-..
T Consensus 176 ~SR--c~~~ef~~ls~~el~~~L~~i~~~e 203 (507)
T PRK06645 176 ISR--CQRYDLRRLSFEEIFKLLEYITKQE 203 (507)
T ss_pred Hhc--ceEEEccCCCHHHHHHHHHHHHHHc
Confidence 322 2679999999999999998877543
No 86
>PRK04195 replication factor C large subunit; Provisional
Probab=97.39 E-value=0.01 Score=67.32 Aligned_cols=150 Identities=15% Similarity=0.157 Sum_probs=82.8
Q ss_pred CCceeechhhHHHHHHHHhcC--CCCceEEEEEcCCCchhhHHHHHHhccccccCCCCceEEEEeCCCCCHHHHHHHHHH
Q 002663 170 DDEVVGIESIKDKLIDLMVNG--RSKSSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRTIIK 247 (895)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~l~~~i~~ 247 (895)
-++++|.++.++++.+|+..- +...+.+.|+|++|+||||+|++++++ .. |+ .+-++.+...+.. ....++.
T Consensus 13 l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~e--l~--~~-~ielnasd~r~~~-~i~~~i~ 86 (482)
T PRK04195 13 LSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALAND--YG--WE-VIELNASDQRTAD-VIERVAG 86 (482)
T ss_pred HHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHH--cC--CC-EEEEcccccccHH-HHHHHHH
Confidence 467999999999999998742 222678999999999999999999995 32 22 2333444433332 3333333
Q ss_pred HHHhccCCCCCCCCc---cCcCcc------ccHHHHHHhcCCCCCCcEEEEEcCchh-hhh-hhccCCCcceeeccCCCh
Q 002663 248 EFHRLSKHGRDGPDR---HAEGPL------EGQKDVEHALLDNKKCSRIIVTTRHMN-VAK-FCKSSSSVRIHELETLPP 316 (895)
Q Consensus 248 ~l~~~~~~~~~~~~~---~~~~~L------~~~~~l~~~l~~~~~gs~iivTTR~~~-v~~-~~~~~~~~~~~~l~~L~~ 316 (895)
............... +..+.+ ..+..+...+.. .+..||+|+.+.. +.. .... ....+++.+++.
T Consensus 87 ~~~~~~sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~--~~~~iIli~n~~~~~~~k~Lrs--r~~~I~f~~~~~ 162 (482)
T PRK04195 87 EAATSGSLFGARRKLILLDEVDGIHGNEDRGGARAILELIKK--AKQPIILTANDPYDPSLRELRN--ACLMIEFKRLST 162 (482)
T ss_pred HhhccCcccCCCCeEEEEecCcccccccchhHHHHHHHHHHc--CCCCEEEeccCccccchhhHhc--cceEEEecCCCH
Confidence 322211100000000 011111 123334444432 2345677765432 211 1111 126789999999
Q ss_pred hhHHHHHHHhhcC
Q 002663 317 DEAWKLFCRKAFG 329 (895)
Q Consensus 317 ~es~~Lf~~~a~~ 329 (895)
++....+...+..
T Consensus 163 ~~i~~~L~~i~~~ 175 (482)
T PRK04195 163 RSIVPVLKRICRK 175 (482)
T ss_pred HHHHHHHHHHHHH
Confidence 9988888776644
No 87
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=97.39 E-value=0.00038 Score=70.51 Aligned_cols=137 Identities=12% Similarity=0.102 Sum_probs=73.0
Q ss_pred chhhHHHHHHHHhcCCCCceEEEEEcCCCchhhHHHHHHhccccccCCCCceEEEEeCCCCCHHHHHHHHHHHHHhccCC
Q 002663 176 IESIKDKLIDLMVNGRSKSSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRTIIKEFHRLSKH 255 (895)
Q Consensus 176 r~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~ 255 (895)
-+..++.+.+++.. .....|.|+|..|+|||++|+++++. ........++++++.-.+. ...++..+...
T Consensus 22 ~~~~~~~l~~~~~~--~~~~~lll~G~~G~GKT~la~~~~~~--~~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~--- 91 (226)
T TIGR03420 22 NAELLAALRQLAAG--KGDRFLYLWGESGSGKSHLLQAACAA--AEERGKSAIYLPLAELAQA---DPEVLEGLEQA--- 91 (226)
T ss_pred cHHHHHHHHHHHhc--CCCCeEEEECCCCCCHHHHHHHHHHH--HHhcCCcEEEEeHHHHHHh---HHHHHhhcccC---
Confidence 45567777777643 23568999999999999999999985 3223344556665432211 01222211100
Q ss_pred CCCCCCccCcCccc---cH-HHHHHhcCC-CCCCcEEEEEcCchh---------hhhhhccCCCcceeeccCCChhhHHH
Q 002663 256 GRDGPDRHAEGPLE---GQ-KDVEHALLD-NKKCSRIIVTTRHMN---------VAKFCKSSSSVRIHELETLPPDEAWK 321 (895)
Q Consensus 256 ~~~~~~~~~~~~L~---~~-~~l~~~l~~-~~~gs~iivTTR~~~---------v~~~~~~~~~~~~~~l~~L~~~es~~ 321 (895)
...-.+..+.+. .| +.+...+.. ...+.++|+||+... +...+.. ...+++++++.++-..
T Consensus 92 --~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~---~~~i~l~~l~~~e~~~ 166 (226)
T TIGR03420 92 --DLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAW---GLVFQLPPLSDEEKIA 166 (226)
T ss_pred --CEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhc---CeeEecCCCCHHHHHH
Confidence 000001111121 11 222222221 122347899888532 1222211 1578999999999999
Q ss_pred HHHHhh
Q 002663 322 LFCRKA 327 (895)
Q Consensus 322 Lf~~~a 327 (895)
++...+
T Consensus 167 ~l~~~~ 172 (226)
T TIGR03420 167 ALQSRA 172 (226)
T ss_pred HHHHHH
Confidence 987754
No 88
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.38 E-value=0.0022 Score=72.15 Aligned_cols=152 Identities=14% Similarity=0.114 Sum_probs=87.6
Q ss_pred CCceeechhhHHHHHHHHhcCCCCceEEEEEcCCCchhhHHHHHHhccccc-------------------cCCCCceEEE
Q 002663 170 DDEVVGIESIKDKLIDLMVNGRSKSSVVAVVGEGGLGKTTLAGKLFNNEGL-------------------KTHFSCRAWV 230 (895)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~-------------------~~~F~~~~wv 230 (895)
-+++||-+..++.+...+..+. -.+.+.++|+.|+||||+|+.+++...- ...|...+++
T Consensus 15 f~diiGq~~~v~~L~~~i~~~r-l~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dliei 93 (546)
T PRK14957 15 FAEVAGQQHALNSLVHALETQK-VHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEI 93 (546)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEe
Confidence 3678999999999999987643 3456789999999999999999873110 0123344455
Q ss_pred EeCCCCCHHHHHHHHHHHHHhccCCCCCCCCc---cCcCcc--ccHHHHHHhcCCCCCCcEEE-EEcCchhhhhhhccCC
Q 002663 231 TVGKEYNKNDLLRTIIKEFHRLSKHGRDGPDR---HAEGPL--EGQKDVEHALLDNKKCSRII-VTTRHMNVAKFCKSSS 304 (895)
Q Consensus 231 ~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~---~~~~~L--~~~~~l~~~l~~~~~gs~ii-vTTR~~~v~~~~~~~~ 304 (895)
+......+.++ +.+++.+...... ..... +..+.+ ..++.+...+......+++| +||....+......
T Consensus 94 daas~~gvd~i-r~ii~~~~~~p~~--g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Ttd~~kil~tI~S-- 168 (546)
T PRK14957 94 DAASRTGVEET-KEILDNIQYMPSQ--GRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTILS-- 168 (546)
T ss_pred ecccccCHHHH-HHHHHHHHhhhhc--CCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEECChhhhhhhHHH--
Confidence 44333444332 4444444322111 00000 111112 14555666666555556555 45544445433222
Q ss_pred CcceeeccCCChhhHHHHHHHhh
Q 002663 305 SVRIHELETLPPDEAWKLFCRKA 327 (895)
Q Consensus 305 ~~~~~~l~~L~~~es~~Lf~~~a 327 (895)
...++++++++.++-.+.+.+.+
T Consensus 169 Rc~~~~f~~Ls~~eI~~~L~~il 191 (546)
T PRK14957 169 RCIQLHLKHISQADIKDQLKIIL 191 (546)
T ss_pred heeeEEeCCCCHHHHHHHHHHHH
Confidence 12689999999999877777644
No 89
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.38 E-value=0.00011 Score=85.36 Aligned_cols=109 Identities=23% Similarity=0.225 Sum_probs=84.4
Q ss_pred ccCCcceeEEEEEccCCCCccchhcccCCCceeeEEecCCCCCCcCccccccccCCCeEeecCCCccccc--ccccCcCC
Q 002663 510 SIKDWKVRSVILFNVDKLPDSFMKSCIANFKLMKVLDLEDSPINYLPEGVGNLFNLHLLNARNTKLKIIP--KSIGNLLS 587 (895)
Q Consensus 510 ~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~i~~l~~Lr~L~L~~~~l~~lp--~~i~~l~~ 587 (895)
..-.|.+++|.+.+.....++ +...+.+|++|+.||+|+++++.+ .++++|++|+.|.+++-.+..-. ..+.+|++
T Consensus 144 g~~LPsL~sL~i~~~~~~~~d-F~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~ 221 (699)
T KOG3665|consen 144 GTMLPSLRSLVISGRQFDNDD-FSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKK 221 (699)
T ss_pred hhhCcccceEEecCceecchh-HHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHHhcccC
Confidence 345789999999887654333 456678999999999999999988 78999999999999997766322 34678999
Q ss_pred CcEEEcCcccccccch-------hhhccccCCeEEeeccc
Q 002663 588 LEILVLARTFVSELPE-------EIRNLKKLRSLIVFHYK 620 (895)
Q Consensus 588 L~~L~L~~~~l~~lp~-------~i~~l~~L~~L~l~~~~ 620 (895)
|+.||+|......-+. .-..||+||.||.+++.
T Consensus 222 L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 222 LRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTD 261 (699)
T ss_pred CCeeeccccccccchHHHHHHHHhcccCccccEEecCCcc
Confidence 9999999863333221 12258999999999754
No 90
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.38 E-value=0.006 Score=62.57 Aligned_cols=155 Identities=13% Similarity=0.122 Sum_probs=86.4
Q ss_pred CCCceeechhhHHHHHHHHhcC-----------CCCceEEEEEcCCCchhhHHHHHHhccccccCCCCceEEEEeCCCC-
Q 002663 169 EDDEVVGIESIKDKLIDLMVNG-----------RSKSSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEY- 236 (895)
Q Consensus 169 ~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~- 236 (895)
.-.++=|.++.+++|.+..... =+..+=|.+||++|.|||-||++|++. ....| +.+...-
T Consensus 149 tY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~--T~AtF-----IrvvgSEl 221 (406)
T COG1222 149 TYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQ--TDATF-----IRVVGSEL 221 (406)
T ss_pred ChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhc--cCceE-----EEeccHHH
Confidence 3356789999999999887642 123566889999999999999999994 44443 3332211
Q ss_pred ------CHHHHHHHHHHHHHhccCCC---CCCCCccCcCccc-----------cHHHHHHhcCCCC--CCcEEEEEcCch
Q 002663 237 ------NKNDLLRTIIKEFHRLSKHG---RDGPDRHAEGPLE-----------GQKDVEHALLDNK--KCSRIIVTTRHM 294 (895)
Q Consensus 237 ------~~~~l~~~i~~~l~~~~~~~---~~~~~~~~~~~L~-----------~~~~l~~~l~~~~--~gs~iivTTR~~ 294 (895)
.-..+.+++..-........ +.. +....++.+ ..-++...+.++. ..-|||..|.-.
T Consensus 222 VqKYiGEGaRlVRelF~lArekaPsIIFiDEI-DAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~ 300 (406)
T COG1222 222 VQKYIGEGARLVRELFELAREKAPSIIFIDEI-DAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRP 300 (406)
T ss_pred HHHHhccchHHHHHHHHHHhhcCCeEEEEech-hhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCc
Confidence 11123333332221110000 000 000000000 1111222222222 246899988877
Q ss_pred hhhh--hhccCCCcceeeccCCChhhHHHHHHHhhcCCC
Q 002663 295 NVAK--FCKSSSSVRIHELETLPPDEAWKLFCRKAFGPS 331 (895)
Q Consensus 295 ~v~~--~~~~~~~~~~~~l~~L~~~es~~Lf~~~a~~~~ 331 (895)
++.+ ......-++.++++.-+.+--.++|+-|+-+..
T Consensus 301 D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~ 339 (406)
T COG1222 301 DILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMN 339 (406)
T ss_pred cccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhcc
Confidence 6654 234444557899997788888899999986654
No 91
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.35 E-value=0.0021 Score=72.34 Aligned_cols=153 Identities=15% Similarity=0.117 Sum_probs=88.2
Q ss_pred CCceeechhhHHHHHHHHhcCCCCceEEEEEcCCCchhhHHHHHHhccccc------------------------cCCCC
Q 002663 170 DDEVVGIESIKDKLIDLMVNGRSKSSVVAVVGEGGLGKTTLAGKLFNNEGL------------------------KTHFS 225 (895)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~------------------------~~~F~ 225 (895)
-+++||-+..++.|.+.+..+. -.+.+.++|..|+||||+|+.+.+...- .+.|.
T Consensus 15 FddVIGQe~vv~~L~~al~~gR-LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG~hp 93 (700)
T PRK12323 15 FTTLVGQEHVVRALTHALEQQR-LHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAGRFV 93 (700)
T ss_pred HHHHcCcHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcCCCC
Confidence 3679999999999999998653 2467789999999999999988764211 01122
Q ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHhccCCCCCCCCc---cCcCcc--ccHHHHHHhcCCCCCCcEEE-EEcCchhhhhh
Q 002663 226 CRAWVTVGKEYNKNDLLRTIIKEFHRLSKHGRDGPDR---HAEGPL--EGQKDVEHALLDNKKCSRII-VTTRHMNVAKF 299 (895)
Q Consensus 226 ~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~---~~~~~L--~~~~~l~~~l~~~~~gs~ii-vTTR~~~v~~~ 299 (895)
..++++......+.++ +++++.+...... ..... +.-+.| ..++.+...+..-....++| +||....+...
T Consensus 94 DviEIdAas~~gVDdI-ReLie~~~~~P~~--gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLlpT 170 (700)
T PRK12323 94 DYIEMDAASNRGVDEM-AQLLDKAVYAPTA--GRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVT 170 (700)
T ss_pred cceEecccccCCHHHH-HHHHHHHHhchhc--CCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhhhH
Confidence 3445544433344433 3444444322111 00000 111111 14445555554444445544 45555555543
Q ss_pred hccCCCcceeeccCCChhhHHHHHHHhhc
Q 002663 300 CKSSSSVRIHELETLPPDEAWKLFCRKAF 328 (895)
Q Consensus 300 ~~~~~~~~~~~l~~L~~~es~~Lf~~~a~ 328 (895)
...- ...+.++.++.++..+.+.+.+.
T Consensus 171 IrSR--Cq~f~f~~ls~eei~~~L~~Il~ 197 (700)
T PRK12323 171 VLSR--CLQFNLKQMPPGHIVSHLDAILG 197 (700)
T ss_pred HHHH--HHhcccCCCChHHHHHHHHHHHH
Confidence 3221 16899999999999888876653
No 92
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.34 E-value=0.0027 Score=71.29 Aligned_cols=155 Identities=17% Similarity=0.122 Sum_probs=89.7
Q ss_pred CCceeechhhHHHHHHHHhcCCCCceEEEEEcCCCchhhHHHHHHhccccccCCCC------------------ceEEEE
Q 002663 170 DDEVVGIESIKDKLIDLMVNGRSKSSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFS------------------CRAWVT 231 (895)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~------------------~~~wv~ 231 (895)
-+++||-+..++.+..++..+. -.+.+.++|++|+||||+|+.+++...-.+.+. .+.+++
T Consensus 13 ~~dvvGq~~v~~~L~~~i~~~~-l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~el~ 91 (504)
T PRK14963 13 FDEVVGQEHVKEVLLAALRQGR-LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVLEID 91 (504)
T ss_pred HHHhcChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceEEec
Confidence 3578999999999999887653 235779999999999999999987532111111 133444
Q ss_pred eCCCCCHHHHHHHHHHHHHhccCCCCCCCCc---cCcCcc--ccHHHHHHhcCCCCCCcEEEEEcC-chhhhhhhccCCC
Q 002663 232 VGKEYNKNDLLRTIIKEFHRLSKHGRDGPDR---HAEGPL--EGQKDVEHALLDNKKCSRIIVTTR-HMNVAKFCKSSSS 305 (895)
Q Consensus 232 ~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~---~~~~~L--~~~~~l~~~l~~~~~gs~iivTTR-~~~v~~~~~~~~~ 305 (895)
.+....+. ..+++...+...... ..... +..+.+ ..++.+...+........+|++|. ...+.......
T Consensus 92 ~~~~~~vd-~iR~l~~~~~~~p~~--~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SR-- 166 (504)
T PRK14963 92 AASNNSVE-DVRDLREKVLLAPLR--GGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSR-- 166 (504)
T ss_pred ccccCCHH-HHHHHHHHHhhcccc--CCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcc--
Confidence 43333333 334454444322110 00000 111112 145556666655544555555554 34443333221
Q ss_pred cceeeccCCChhhHHHHHHHhhcCC
Q 002663 306 VRIHELETLPPDEAWKLFCRKAFGP 330 (895)
Q Consensus 306 ~~~~~l~~L~~~es~~Lf~~~a~~~ 330 (895)
...+++.+++.++..+.+.+.+-..
T Consensus 167 c~~~~f~~ls~~el~~~L~~i~~~e 191 (504)
T PRK14963 167 TQHFRFRRLTEEEIAGKLRRLLEAE 191 (504)
T ss_pred eEEEEecCCCHHHHHHHHHHHHHHc
Confidence 2689999999999999998876443
No 93
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.32 E-value=0.0023 Score=70.93 Aligned_cols=155 Identities=15% Similarity=0.150 Sum_probs=93.0
Q ss_pred CCceeechhhHHHHHHHHhcCCCCceEEEEEcCCCchhhHHHHHHhccc------c------------c-cCCCCceEEE
Q 002663 170 DDEVVGIESIKDKLIDLMVNGRSKSSVVAVVGEGGLGKTTLAGKLFNNE------G------------L-KTHFSCRAWV 230 (895)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~------~------------~-~~~F~~~~wv 230 (895)
-+++||-+..++.+.+.+..+. -.+.+-++|+.|+||||+|+.+.... . + ...+..++.+
T Consensus 12 f~dliGQe~vv~~L~~a~~~~r-i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~ei 90 (491)
T PRK14964 12 FKDLVGQDVLVRILRNAFTLNK-IPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEI 90 (491)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEE
Confidence 3678999999999988887653 23578999999999999999887521 0 0 1123345566
Q ss_pred EeCCCCCHHHHHHHHHHHHHhccCCCCCCCCc---cCcCccc--cHHHHHHhcCCCCCCcEEEEEcC-chhhhhhhccCC
Q 002663 231 TVGKEYNKNDLLRTIIKEFHRLSKHGRDGPDR---HAEGPLE--GQKDVEHALLDNKKCSRIIVTTR-HMNVAKFCKSSS 304 (895)
Q Consensus 231 ~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~---~~~~~L~--~~~~l~~~l~~~~~gs~iivTTR-~~~v~~~~~~~~ 304 (895)
+.+....+.+ .+.+++...-.... ..... +..+.|. ..+.+...+..-.+.+++|++|. .+.+.......
T Consensus 91 daas~~~vdd-IR~Iie~~~~~P~~--~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte~~Kl~~tI~SR- 166 (491)
T PRK14964 91 DAASNTSVDD-IKVILENSCYLPIS--SKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKKIPVTIISR- 166 (491)
T ss_pred ecccCCCHHH-HHHHHHHHHhcccc--CCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCChHHHHHHHHHh-
Confidence 6655555554 34455444322110 00000 1111121 45556666666556677666554 34554433322
Q ss_pred CcceeeccCCChhhHHHHHHHhhcCC
Q 002663 305 SVRIHELETLPPDEAWKLFCRKAFGP 330 (895)
Q Consensus 305 ~~~~~~l~~L~~~es~~Lf~~~a~~~ 330 (895)
...+++++++.++-.+.+.+.+...
T Consensus 167 -c~~~~f~~l~~~el~~~L~~ia~~E 191 (491)
T PRK14964 167 -CQRFDLQKIPTDKLVEHLVDIAKKE 191 (491)
T ss_pred -heeeecccccHHHHHHHHHHHHHHc
Confidence 2689999999999988888776543
No 94
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.32 E-value=0.0017 Score=75.16 Aligned_cols=46 Identities=26% Similarity=0.349 Sum_probs=38.6
Q ss_pred CceeechhhHHHHHHHHhcCCCCceEEEEEcCCCchhhHHHHHHhccc
Q 002663 171 DEVVGIESIKDKLIDLMVNGRSKSSVVAVVGEGGLGKTTLAGKLFNNE 218 (895)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 218 (895)
++++|.+..++.+.+.+... ....+.|+|++|+||||+|+.+++..
T Consensus 154 ~~iiGqs~~~~~l~~~ia~~--~~~~vlL~Gp~GtGKTTLAr~i~~~~ 199 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVASP--FPQHIILYGPPGVGKTTAARLALEEA 199 (615)
T ss_pred HhceeCcHHHHHHHHHHhcC--CCCeEEEECCCCCCHHHHHHHHHHhh
Confidence 56899999999988877543 35579999999999999999998753
No 95
>PRK08118 topology modulation protein; Reviewed
Probab=97.31 E-value=0.0001 Score=70.10 Aligned_cols=36 Identities=31% Similarity=0.567 Sum_probs=28.6
Q ss_pred eEEEEEcCCCchhhHHHHHHhcccccc-CCCCceEEE
Q 002663 195 SVVAVVGEGGLGKTTLAGKLFNNEGLK-THFSCRAWV 230 (895)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~~~~~-~~F~~~~wv 230 (895)
+.|.|+|++|+||||||+.+++..... .+||..+|-
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~ 38 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWK 38 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhcc
Confidence 368999999999999999999864443 457777753
No 96
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.31 E-value=1.3e-05 Score=69.50 Aligned_cols=77 Identities=21% Similarity=0.231 Sum_probs=35.6
Q ss_pred ceeeEEecCCCCCCcCcccccc-ccCCCeEeecCCCcccccccccCcCCCcEEEcCcccccccchhhhccccCCeEEe
Q 002663 540 KLMKVLDLEDSPINYLPEGVGN-LFNLHLLNARNTKLKIIPKSIGNLLSLEILVLARTFVSELPEEIRNLKKLRSLIV 616 (895)
Q Consensus 540 ~~L~~L~L~~~~~~~l~~~i~~-l~~Lr~L~L~~~~l~~lp~~i~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l 616 (895)
..|...+|++|.++.+|+.|.. .+.+..|+|++|.|..+|..+..++.|+.|+++.|.+...|..|..|.+|-.|+.
T Consensus 53 ~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds 130 (177)
T KOG4579|consen 53 YELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDS 130 (177)
T ss_pred ceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcC
Confidence 3444444444444444444432 2244444444444444444444444444444444444444444444444444443
No 97
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=97.30 E-value=0.00086 Score=78.34 Aligned_cols=51 Identities=31% Similarity=0.445 Sum_probs=38.2
Q ss_pred CCceeechhhHH---HHHHHHhcCCCCceEEEEEcCCCchhhHHHHHHhccccccCCC
Q 002663 170 DDEVVGIESIKD---KLIDLMVNGRSKSSVVAVVGEGGLGKTTLAGKLFNNEGLKTHF 224 (895)
Q Consensus 170 ~~~~vGr~~~~~---~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F 224 (895)
-+++||.+..+. .+.+.+..+ ....+.+||++|+||||+|+.+++. ....|
T Consensus 27 ldd~vGQe~ii~~~~~L~~~i~~~--~~~slLL~GPpGtGKTTLA~aIA~~--~~~~f 80 (725)
T PRK13341 27 LEEFVGQDHILGEGRLLRRAIKAD--RVGSLILYGPPGVGKTTLARIIANH--TRAHF 80 (725)
T ss_pred HHHhcCcHHHhhhhHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHHH--hcCcc
Confidence 357899988874 455666543 3566789999999999999999984 44444
No 98
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.30 E-value=0.0028 Score=70.46 Aligned_cols=55 Identities=25% Similarity=0.628 Sum_probs=44.8
Q ss_pred CCCCceeechhhHHHHHHHHhcC----CCCceEEEEEcCCCchhhHHHHHHhccccccCCC
Q 002663 168 VEDDEVVGIESIKDKLIDLMVNG----RSKSSVVAVVGEGGLGKTTLAGKLFNNEGLKTHF 224 (895)
Q Consensus 168 ~~~~~~vGr~~~~~~l~~~L~~~----~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F 224 (895)
.-+.+-.|+++-+++|.+++.-+ +.+-+++..+|++|||||.+|+.|+. .....|
T Consensus 408 iLdeDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~--ALnRkF 466 (906)
T KOG2004|consen 408 ILDEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIAR--ALNRKF 466 (906)
T ss_pred hhcccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHH--HhCCce
Confidence 34567799999999999999743 34568999999999999999999998 344444
No 99
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.29 E-value=0.00044 Score=74.62 Aligned_cols=69 Identities=16% Similarity=0.194 Sum_probs=56.1
Q ss_pred CceeechhhHHHHHHHHhcCCCCceEEEEEcCCCchhhHHHHHHhccccccCCCCceEEEEeCCCCCHHHHHH
Q 002663 171 DEVVGIESIKDKLIDLMVNGRSKSSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLR 243 (895)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~l~~ 243 (895)
+++++.++.++.+...|... +.|.++|++|+||||+|+++++.......|+.+.||.+++.++..+++.
T Consensus 175 ~d~~i~e~~le~l~~~L~~~----~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~ 243 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK----KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQ 243 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC----CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhc
Confidence 46888999999999998753 4778899999999999999998644445677788999998887766654
No 100
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.29 E-value=0.0011 Score=70.86 Aligned_cols=11 Identities=27% Similarity=0.377 Sum_probs=5.4
Q ss_pred ccceeeeccCC
Q 002663 787 KLRKLVLLNFE 797 (895)
Q Consensus 787 ~L~~L~l~~~~ 797 (895)
+|++|++.+|.
T Consensus 157 SLk~L~Is~c~ 167 (426)
T PRK15386 157 SLKTLSLTGCS 167 (426)
T ss_pred cccEEEecCCC
Confidence 45555554443
No 101
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.27 E-value=0.0049 Score=68.65 Aligned_cols=154 Identities=17% Similarity=0.127 Sum_probs=84.5
Q ss_pred CCceeechhhHHHHHHHHhcCCCCceEEEEEcCCCchhhHHHHHHhccccccC-------------------CCCceEEE
Q 002663 170 DDEVVGIESIKDKLIDLMVNGRSKSSVVAVVGEGGLGKTTLAGKLFNNEGLKT-------------------HFSCRAWV 230 (895)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~-------------------~F~~~~wv 230 (895)
-+++||.+...+.+...+..+. -.+.+.++|++|+||||+|+.+++...-.. .+.....+
T Consensus 13 ~~divGq~~i~~~L~~~i~~~~-l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el 91 (472)
T PRK14962 13 FSEVVGQDHVKKLIINALKKNS-ISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIEL 91 (472)
T ss_pred HHHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEEE
Confidence 3679999998888888877643 235688999999999999999987421110 01123344
Q ss_pred EeCCCCCHHHHHHHHHHHHHhccCCCCCCCCccCcC---ccc--cHHHHHHhcCCCCCCcEEEEE-cCchhhhhhhccCC
Q 002663 231 TVGKEYNKNDLLRTIIKEFHRLSKHGRDGPDRHAEG---PLE--GQKDVEHALLDNKKCSRIIVT-TRHMNVAKFCKSSS 304 (895)
Q Consensus 231 ~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~---~L~--~~~~l~~~l~~~~~gs~iivT-TR~~~v~~~~~~~~ 304 (895)
+.+......++ +.+.+........ .....-..+ .+. ..+.+...+........+|++ |....+.......
T Consensus 92 ~aa~~~gid~i-R~i~~~~~~~p~~--~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilattn~~kl~~~L~SR- 167 (472)
T PRK14962 92 DAASNRGIDEI-RKIRDAVGYRPME--GKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVPPTIISR- 167 (472)
T ss_pred eCcccCCHHHH-HHHHHHHhhChhc--CCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeCChHhhhHHHhcC-
Confidence 44433444443 3454443321110 000000011 111 233444444443333444444 4334444433322
Q ss_pred CcceeeccCCChhhHHHHHHHhhcC
Q 002663 305 SVRIHELETLPPDEAWKLFCRKAFG 329 (895)
Q Consensus 305 ~~~~~~l~~L~~~es~~Lf~~~a~~ 329 (895)
...+++++++.++-...+...+..
T Consensus 168 -~~vv~f~~l~~~el~~~L~~i~~~ 191 (472)
T PRK14962 168 -CQVIEFRNISDELIIKRLQEVAEA 191 (472)
T ss_pred -cEEEEECCccHHHHHHHHHHHHHH
Confidence 268999999999988888776643
No 102
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.27 E-value=0.00017 Score=70.13 Aligned_cols=235 Identities=17% Similarity=0.077 Sum_probs=130.2
Q ss_pred CcceeEEEEEccCCCC--ccchhcccCCCceeeEEecCCCCCC----cC-------ccccccccCCCeEeecCCCcc-cc
Q 002663 513 DWKVRSVILFNVDKLP--DSFMKSCIANFKLMKVLDLEDSPIN----YL-------PEGVGNLFNLHLLNARNTKLK-II 578 (895)
Q Consensus 513 ~~~lr~l~~~~~~~~~--~~~~~~~~~~~~~L~~L~L~~~~~~----~l-------~~~i~~l~~Lr~L~L~~~~l~-~l 578 (895)
...+..+.+.++..-. .......+.+-++|++.+++..-.. .+ .+.+-+|++|+..+||.|.+. ..
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 4556667777765432 2234456778899999999864322 22 345668999999999998876 44
Q ss_pred cc----cccCcCCCcEEEcCcccccccchh-h-------------hccccCCeEEeeccccccccccccccccccccccc
Q 002663 579 PK----SIGNLLSLEILVLARTFVSELPEE-I-------------RNLKKLRSLIVFHYKYITGSIIPTEVAAKIHRGFG 640 (895)
Q Consensus 579 p~----~i~~l~~L~~L~L~~~~l~~lp~~-i-------------~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~p~~i~ 640 (895)
|+ -|++-..|.+|.|++|.+..+... | ..-|.|+......|....++.
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~-------------- 174 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSK-------------- 174 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcH--------------
Confidence 43 467788999999999977744321 2 233455555555543322211
Q ss_pred CcccceEEeeeecChHHHHHhhccccCcEEEEEecCCCcch----HHHHhhccCCCCEEEEEecCcccccc--cccCcCC
Q 002663 641 SLRGLLVLSTIEADSQVLKELMMLRQLRMLSIRPQNGNGRD----LCALIANLENVETLGVLMTSKEEILD--LQSLSSP 714 (895)
Q Consensus 641 ~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~----l~~~l~~l~~L~~L~l~~~~~~~~~~--l~~~~~~ 714 (895)
......+..-.+|+.+.+..|.+..+. ....+..+++|+.|++..|.++...+ +.
T Consensus 175 --------------~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La----- 235 (388)
T COG5238 175 --------------ELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLA----- 235 (388)
T ss_pred --------------HHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHH-----
Confidence 111223333467777777776544331 22334456677777777665432110 00
Q ss_pred CcCccEEEEeccCCCCCcccccCCCcceEEEEeccCCCcchh----hhc--cCccccceeeccccCCCeEE-------Ee
Q 002663 715 PQHLRYLSLRGNMKKLPDWILKLKNLIGLRLILSGLTEDPIS----ILQ--ALPNLLELMLHGGYDYELFH-------FE 781 (895)
Q Consensus 715 ~~~L~~L~l~~~~~~lp~~~~~l~~L~~L~L~~~~l~~~~~~----~l~--~l~~L~~L~L~~~~~~~~~~-------~~ 781 (895)
..+|. .+.|+.|.+..|-+...... .+. ..|+|..|.+.+|-...... +.
T Consensus 236 -------------~al~~----W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e 298 (388)
T COG5238 236 -------------DALCE----WNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFE 298 (388)
T ss_pred -------------HHhcc----cchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhh
Confidence 11222 24456666666655433222 111 35666666666553322211 11
Q ss_pred cCCCcccceeeeccCC
Q 002663 782 AGWFPKLRKLVLLNFE 797 (895)
Q Consensus 782 ~~~~~~L~~L~l~~~~ 797 (895)
.+.+|-|..|.+.+|.
T Consensus 299 ~~~~p~L~~le~ngNr 314 (388)
T COG5238 299 QDAVPLLVDLERNGNR 314 (388)
T ss_pred hcccHHHHHHHHccCc
Confidence 2456667777666653
No 103
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.27 E-value=3.9e-05 Score=66.64 Aligned_cols=78 Identities=24% Similarity=0.370 Sum_probs=43.4
Q ss_pred eeEEecCCCCCCcCc---cccccccCCCeEeecCCCcccccccccC-cCCCcEEEcCcccccccchhhhccccCCeEEee
Q 002663 542 MKVLDLEDSPINYLP---EGVGNLFNLHLLNARNTKLKIIPKSIGN-LLSLEILVLARTFVSELPEEIRNLKKLRSLIVF 617 (895)
Q Consensus 542 L~~L~L~~~~~~~l~---~~i~~l~~Lr~L~L~~~~l~~lp~~i~~-l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~ 617 (895)
+-.+||+.|.+..++ ..+....+|...+|++|.++.+|+.+.. .+.+++|+|++|.+..+|.++..++.|+.|+++
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~ 108 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLR 108 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccc
Confidence 344555555544332 2333444555556666666666655533 335666666666666666666666666666666
Q ss_pred cc
Q 002663 618 HY 619 (895)
Q Consensus 618 ~~ 619 (895)
.|
T Consensus 109 ~N 110 (177)
T KOG4579|consen 109 FN 110 (177)
T ss_pred cC
Confidence 53
No 104
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.27 E-value=3.3e-05 Score=88.69 Aligned_cols=235 Identities=19% Similarity=0.089 Sum_probs=107.4
Q ss_pred ccCCCeEeecCC-Cccc--ccccccCcCCCcEEEcCcc--cccccc----hhhhccccCCeEEeeccccccccccccccc
Q 002663 562 LFNLHLLNARNT-KLKI--IPKSIGNLLSLEILVLART--FVSELP----EEIRNLKKLRSLIVFHYKYITGSIIPTEVA 632 (895)
Q Consensus 562 l~~Lr~L~L~~~-~l~~--lp~~i~~l~~L~~L~L~~~--~l~~lp----~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~ 632 (895)
+++|+.|.+.++ .+.. +-+....+++|+.|+++++ .....+ .....+++|++|+++.+...+
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~is--------- 257 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVT--------- 257 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccC---------
Confidence 566777776663 3333 3234456677777777762 211111 223345666777766653211
Q ss_pred ccccccccCcccceEEeeeecChHHHHHhh-ccccCcEEEEEecC-CCcchHHHHhhccCCCCEEEEEecCccccccccc
Q 002663 633 AKIHRGFGSLRGLLVLSTIEADSQVLKELM-MLRQLRMLSIRPQN-GNGRDLCALIANLENVETLGVLMTSKEEILDLQS 710 (895)
Q Consensus 633 ~~~p~~i~~l~~L~~L~~~~~~~~~~~~l~-~l~~L~~L~l~~~~-~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~l~~ 710 (895)
...+..+. .+++|+.|.+.... .+...+......+++|++|++++|.......+..
T Consensus 258 ----------------------d~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~ 315 (482)
T KOG1947|consen 258 ----------------------DIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEA 315 (482)
T ss_pred ----------------------chhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHH
Confidence 11222222 25666666644432 4555555666666666666666665432222222
Q ss_pred CcCCCcCccEEEEeccCCCCCcccccCCCcceEEEEeccCCC---cchhhhccCccccceeeccccCCCeEEEecCCCcc
Q 002663 711 LSSPPQHLRYLSLRGNMKKLPDWILKLKNLIGLRLILSGLTE---DPISILQALPNLLELMLHGGYDYELFHFEAGWFPK 787 (895)
Q Consensus 711 ~~~~~~~L~~L~l~~~~~~lp~~~~~l~~L~~L~L~~~~l~~---~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~ 787 (895)
....+++|+.|.+..... +..++.+.+..+.... .....+..+++|+.+.+..+.......
T Consensus 316 ~~~~c~~l~~l~~~~~~~--------c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~-------- 379 (482)
T KOG1947|consen 316 LLKNCPNLRELKLLSLNG--------CPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGL-------- 379 (482)
T ss_pred HHHhCcchhhhhhhhcCC--------CccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcch--------
Confidence 222333444443332211 4444555444443211 112233456666666666554221110
Q ss_pred cceeeeccCCCc-eeeEEccCcccccceEEEccCCCCcccC-ccccc-cccCcEEEEEcCh
Q 002663 788 LRKLVLLNFEAV-KLVIIEKGAMPDIRELWSGPCPLLMEIP-IGIEH-LRNLELFTFHDMS 845 (895)
Q Consensus 788 L~~L~l~~~~~l-~~l~~~~~~~~~L~~L~l~~c~~l~~lp-~~~~~-l~~L~~L~l~~c~ 845 (895)
.+.+.+|+.+ ..+.........|+.|+++.|...+.-- ..... +.++..+++.+|+
T Consensus 380 --~~~l~gc~~l~~~l~~~~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~ 438 (482)
T KOG1947|consen 380 --ELSLRGCPNLTESLELRLCRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCR 438 (482)
T ss_pred --HHHhcCCcccchHHHHHhccCCccceEecccCccccccchHHHhhhhhccccCCccCcc
Confidence 2223333333 1111111222336667777666443110 01111 5566667777765
No 105
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=97.26 E-value=0.00018 Score=73.37 Aligned_cols=43 Identities=33% Similarity=0.484 Sum_probs=36.1
Q ss_pred eeechhhHHHHHHHHhcCCCCceEEEEEcCCCchhhHHHHHHhcc
Q 002663 173 VVGIESIKDKLIDLMVNGRSKSSVVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 173 ~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
|+||++++++|.+++..+. .+.+.|+|+.|+|||+|++++.+.
T Consensus 1 F~gR~~el~~l~~~l~~~~--~~~~~l~G~rg~GKTsLl~~~~~~ 43 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGP--SQHILLYGPRGSGKTSLLKEFINE 43 (234)
T ss_dssp S-S-HHHHHHHHHCHHH----SSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhc--CcEEEEEcCCcCCHHHHHHHHHHH
Confidence 6899999999999998643 678999999999999999999984
No 106
>PRK09087 hypothetical protein; Validated
Probab=97.23 E-value=0.0038 Score=62.50 Aligned_cols=116 Identities=14% Similarity=0.073 Sum_probs=62.1
Q ss_pred ceEEEEEcCCCchhhHHHHHHhccccccCCCCceEEEEeCCCCCHHHHHHHHHHHHHhccCCCCCCCCccCcCccccHHH
Q 002663 194 SSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRTIIKEFHRLSKHGRDGPDRHAEGPLEGQKD 273 (895)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~~~ 273 (895)
.+.+.|||..|+|||+|++.++.. .. ..|++.. .+...+...+....--.++.... ...+ ..+-.
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~--~~-----~~~i~~~------~~~~~~~~~~~~~~l~iDDi~~~-~~~~-~~lf~ 108 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREK--SD-----ALLIHPN------EIGSDAANAAAEGPVLIEDIDAG-GFDE-TGLFH 108 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHh--cC-----CEEecHH------HcchHHHHhhhcCeEEEECCCCC-CCCH-HHHHH
Confidence 467899999999999999999874 21 1244332 22222222221100000000000 0000 01111
Q ss_pred HHHhcCCCCCCcEEEEEcCc---------hhhhhhhccCCCcceeeccCCChhhHHHHHHHhhcC
Q 002663 274 VEHALLDNKKCSRIIVTTRH---------MNVAKFCKSSSSVRIHELETLPPDEAWKLFCRKAFG 329 (895)
Q Consensus 274 l~~~l~~~~~gs~iivTTR~---------~~v~~~~~~~~~~~~~~l~~L~~~es~~Lf~~~a~~ 329 (895)
+-..+. ..|..||+|++. +++...+... .++++++++.++-.+++.+++-.
T Consensus 109 l~n~~~--~~g~~ilits~~~p~~~~~~~~dL~SRl~~g---l~~~l~~pd~e~~~~iL~~~~~~ 168 (226)
T PRK09087 109 LINSVR--QAGTSLLMTSRLWPSSWNVKLPDLKSRLKAA---TVVEIGEPDDALLSQVIFKLFAD 168 (226)
T ss_pred HHHHHH--hCCCeEEEECCCChHHhccccccHHHHHhCC---ceeecCCCCHHHHHHHHHHHHHH
Confidence 111111 225679999873 3344444433 68999999999999999988744
No 107
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.23 E-value=0.0042 Score=69.99 Aligned_cols=152 Identities=16% Similarity=0.119 Sum_probs=88.4
Q ss_pred CCceeechhhHHHHHHHHhcCCCCceEEEEEcCCCchhhHHHHHHhccccc-------------------cCCCCceEEE
Q 002663 170 DDEVVGIESIKDKLIDLMVNGRSKSSVVAVVGEGGLGKTTLAGKLFNNEGL-------------------KTHFSCRAWV 230 (895)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~-------------------~~~F~~~~wv 230 (895)
-+++||-+..++.+.+++..+. -.+.+.++|+.|+||||+|+.+.+..-- .+.|..++.+
T Consensus 15 f~divGq~~v~~~L~~~~~~~~-l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~ei 93 (509)
T PRK14958 15 FQEVIGQAPVVRALSNALDQQY-LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEV 93 (509)
T ss_pred HHHhcCCHHHHHHHHHHHHhCC-CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEEE
Confidence 3678999999999999997653 2356789999999999999988874211 1123334555
Q ss_pred EeCCCCCHHHHHHHHHHHHHhccCCCCCCCCc---cCcCcc--ccHHHHHHhcCCCCCCcEEEEEcCc-hhhhhhhccCC
Q 002663 231 TVGKEYNKNDLLRTIIKEFHRLSKHGRDGPDR---HAEGPL--EGQKDVEHALLDNKKCSRIIVTTRH-MNVAKFCKSSS 304 (895)
Q Consensus 231 ~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~---~~~~~L--~~~~~l~~~l~~~~~gs~iivTTR~-~~v~~~~~~~~ 304 (895)
+.+....+.++ +++++.+...... ..... +..+.| ...+.+...+....+.+++|++|.+ ..+......-
T Consensus 94 daas~~~v~~i-R~l~~~~~~~p~~--~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~~kl~~tI~SR- 169 (509)
T PRK14958 94 DAASRTKVEDT-RELLDNIPYAPTK--GRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLPVTVLSR- 169 (509)
T ss_pred cccccCCHHHH-HHHHHHHhhcccc--CCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECChHhchHHHHHH-
Confidence 55444455554 4566554432111 00000 111111 1444555555555556666665543 3443332211
Q ss_pred CcceeeccCCChhhHHHHHHHhh
Q 002663 305 SVRIHELETLPPDEAWKLFCRKA 327 (895)
Q Consensus 305 ~~~~~~l~~L~~~es~~Lf~~~a 327 (895)
...+++++++.++-...+.+.+
T Consensus 170 -c~~~~f~~l~~~~i~~~l~~il 191 (509)
T PRK14958 170 -CLQFHLAQLPPLQIAAHCQHLL 191 (509)
T ss_pred -hhhhhcCCCCHHHHHHHHHHHH
Confidence 1578899999988776655554
No 108
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=97.22 E-value=0.0033 Score=70.88 Aligned_cols=153 Identities=17% Similarity=0.161 Sum_probs=86.7
Q ss_pred CCceeechhhHHHHHHHHhcCCCCceEEEEEcCCCchhhHHHHHHhccccccC-------------------CCCceEEE
Q 002663 170 DDEVVGIESIKDKLIDLMVNGRSKSSVVAVVGEGGLGKTTLAGKLFNNEGLKT-------------------HFSCRAWV 230 (895)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~-------------------~F~~~~wv 230 (895)
-++++|.+..++.+.+.+..+. -.+.+.++|+.|+||||+|+.+.+...-.. .....+++
T Consensus 15 F~dIIGQe~iv~~L~~aI~~~r-l~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~~~~h~DiieI 93 (605)
T PRK05896 15 FKQIIGQELIKKILVNAILNNK-LTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINTNQSVDIVEL 93 (605)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHHcCCCCceEEe
Confidence 4678999999999999987653 246788999999999999999877421000 01123344
Q ss_pred EeCCCCCHHHHHHHHHHHHHhccCCCCCCCCc---cCcCcc--ccHHHHHHhcCCCCCCcEEEEEc-CchhhhhhhccCC
Q 002663 231 TVGKEYNKNDLLRTIIKEFHRLSKHGRDGPDR---HAEGPL--EGQKDVEHALLDNKKCSRIIVTT-RHMNVAKFCKSSS 304 (895)
Q Consensus 231 ~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~---~~~~~L--~~~~~l~~~l~~~~~gs~iivTT-R~~~v~~~~~~~~ 304 (895)
+.+....+.++ +.+.+.+...... ..... +..+.+ ..++.+...+........+|++| ....+......-
T Consensus 94 daas~igVd~I-ReIi~~~~~~P~~--~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~TI~SR- 169 (605)
T PRK05896 94 DAASNNGVDEI-RNIIDNINYLPTT--FKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLTIISR- 169 (605)
T ss_pred ccccccCHHHH-HHHHHHHHhchhh--CCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhHHHHhh-
Confidence 43333334333 4444443322111 00000 001111 14555555555544455565554 444443332211
Q ss_pred CcceeeccCCChhhHHHHHHHhhc
Q 002663 305 SVRIHELETLPPDEAWKLFCRKAF 328 (895)
Q Consensus 305 ~~~~~~l~~L~~~es~~Lf~~~a~ 328 (895)
...+++.++++++....+...+-
T Consensus 170 -cq~ieF~~Ls~~eL~~~L~~il~ 192 (605)
T PRK05896 170 -CQRYNFKKLNNSELQELLKSIAK 192 (605)
T ss_pred -hhhcccCCCCHHHHHHHHHHHHH
Confidence 26899999999999888877653
No 109
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.21 E-value=0.0037 Score=68.52 Aligned_cols=153 Identities=13% Similarity=0.049 Sum_probs=84.4
Q ss_pred CCceeechhhHHHHHHHHhcCCCCceEEEEEcCCCchhhHHHHHHhccccccC--CC-----------------CceEEE
Q 002663 170 DDEVVGIESIKDKLIDLMVNGRSKSSVVAVVGEGGLGKTTLAGKLFNNEGLKT--HF-----------------SCRAWV 230 (895)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~--~F-----------------~~~~wv 230 (895)
-+++||-+..+..+..++..+. -.+.+.++|+.|+||||+|+.+++...-.. .+ ..++.+
T Consensus 17 f~dvVGQe~iv~~L~~~i~~~r-i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~dviEI 95 (484)
T PRK14956 17 FRDVIHQDLAIGALQNALKSGK-IGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEITKGISSDVLEI 95 (484)
T ss_pred HHHHhChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHHHccCCccceee
Confidence 3678999999999999988654 235689999999999999999987421110 00 011122
Q ss_pred EeCCCCCHHHHHHHHHHHHHhccCCCCCCCCc---cCcCccc--cHHHHHHhcCCCCCCcEEE-EEcCchhhhhhhccCC
Q 002663 231 TVGKEYNKNDLLRTIIKEFHRLSKHGRDGPDR---HAEGPLE--GQKDVEHALLDNKKCSRII-VTTRHMNVAKFCKSSS 304 (895)
Q Consensus 231 ~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~---~~~~~L~--~~~~l~~~l~~~~~gs~ii-vTTR~~~v~~~~~~~~ 304 (895)
+......+. ..+++.+.+...... ..... +..+.|. .++.+...+........+| .||....+......-
T Consensus 96 daas~~gVd-~IReL~e~l~~~p~~--g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~SR- 171 (484)
T PRK14956 96 DAASNRGIE-NIRELRDNVKFAPMG--GKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILSR- 171 (484)
T ss_pred chhhcccHH-HHHHHHHHHHhhhhc--CCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHHhh-
Confidence 222222222 234444444322111 00000 1111121 4555555554433344544 455545554433321
Q ss_pred CcceeeccCCChhhHHHHHHHhhc
Q 002663 305 SVRIHELETLPPDEAWKLFCRKAF 328 (895)
Q Consensus 305 ~~~~~~l~~L~~~es~~Lf~~~a~ 328 (895)
...|.+.+++.++-.+.+.+.+-
T Consensus 172 -Cq~~~f~~ls~~~i~~~L~~i~~ 194 (484)
T PRK14956 172 -CQDFIFKKVPLSVLQDYSEKLCK 194 (484)
T ss_pred -hheeeecCCCHHHHHHHHHHHHH
Confidence 15799999999998888877654
No 110
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.21 E-value=0.004 Score=71.17 Aligned_cols=154 Identities=14% Similarity=0.150 Sum_probs=88.1
Q ss_pred CCceeechhhHHHHHHHHhcCCCCceEEEEEcCCCchhhHHHHHHhccccc------------------------cCCCC
Q 002663 170 DDEVVGIESIKDKLIDLMVNGRSKSSVVAVVGEGGLGKTTLAGKLFNNEGL------------------------KTHFS 225 (895)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~------------------------~~~F~ 225 (895)
-+++||-+..++.|.+++..+. -.+.+-++|..|+||||+|+.+.+..-- .+.+.
T Consensus 15 f~dviGQe~vv~~L~~~l~~~r-l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C~~i~~g~h~ 93 (618)
T PRK14951 15 FSEMVGQEHVVQALTNALTQQR-LHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQACRDIDSGRFV 93 (618)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHHHHHHcCCCC
Confidence 3678999999999999988653 3467899999999999999998543110 01122
Q ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHhccCCCCCCCCc---cCcCccc--cHHHHHHhcCCCCCCcEEEEEc-Cchhhhhh
Q 002663 226 CRAWVTVGKEYNKNDLLRTIIKEFHRLSKHGRDGPDR---HAEGPLE--GQKDVEHALLDNKKCSRIIVTT-RHMNVAKF 299 (895)
Q Consensus 226 ~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~---~~~~~L~--~~~~l~~~l~~~~~gs~iivTT-R~~~v~~~ 299 (895)
..++++......+.+ .+++++........ ..... +..+.|. .++.+...+..-....++|++| ....+...
T Consensus 94 D~~eldaas~~~Vd~-iReli~~~~~~p~~--g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil~T 170 (618)
T PRK14951 94 DYTELDAASNRGVDE-VQQLLEQAVYKPVQ--GRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPVT 170 (618)
T ss_pred ceeecCcccccCHHH-HHHHHHHHHhCccc--CCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhhhHH
Confidence 234444443344433 34555544322111 00000 1111111 4445555555544455666554 44444433
Q ss_pred hccCCCcceeeccCCChhhHHHHHHHhhcC
Q 002663 300 CKSSSSVRIHELETLPPDEAWKLFCRKAFG 329 (895)
Q Consensus 300 ~~~~~~~~~~~l~~L~~~es~~Lf~~~a~~ 329 (895)
...- ...++++.++.++..+.+.+.+..
T Consensus 171 IlSR--c~~~~f~~Ls~eei~~~L~~i~~~ 198 (618)
T PRK14951 171 VLSR--CLQFNLRPMAPETVLEHLTQVLAA 198 (618)
T ss_pred HHHh--ceeeecCCCCHHHHHHHHHHHHHH
Confidence 2221 268999999999988888776543
No 111
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.20 E-value=0.0007 Score=63.19 Aligned_cols=60 Identities=22% Similarity=0.174 Sum_probs=44.1
Q ss_pred eechhhHHHHHHHHhcCCCCceEEEEEcCCCchhhHHHHHHhccccccCCCCceEEEEeCCCCC
Q 002663 174 VGIESIKDKLIDLMVNGRSKSSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYN 237 (895)
Q Consensus 174 vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~ 237 (895)
+|++..+.++...+... ..+.+.|+|.+|+||||+|+++++.. ...-..++++.......
T Consensus 1 ~~~~~~~~~i~~~~~~~--~~~~v~i~G~~G~GKT~l~~~i~~~~--~~~~~~v~~~~~~~~~~ 60 (151)
T cd00009 1 VGQEEAIEALREALELP--PPKNLLLYGPPGTGKTTLARAIANEL--FRPGAPFLYLNASDLLE 60 (151)
T ss_pred CchHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHh--hcCCCCeEEEehhhhhh
Confidence 47888899998888653 35688999999999999999999853 22223456666655443
No 112
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.19 E-value=0.0064 Score=66.58 Aligned_cols=159 Identities=16% Similarity=0.141 Sum_probs=83.0
Q ss_pred CCCCceeechhhHHHHHHHHhcC-----------CCCceEEEEEcCCCchhhHHHHHHhccccccCCCCceEEEEeCCC-
Q 002663 168 VEDDEVVGIESIKDKLIDLMVNG-----------RSKSSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKE- 235 (895)
Q Consensus 168 ~~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~- 235 (895)
+..++++|+++.++++.+.+... -...+-|.++|++|+|||++|+++++. ....| +.+..+.-
T Consensus 128 ~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~--~~~~~---i~v~~~~l~ 202 (389)
T PRK03992 128 VTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE--TNATF---IRVVGSELV 202 (389)
T ss_pred CCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHH--hCCCE---EEeehHHHh
Confidence 34467899999999999887431 123466899999999999999999984 33222 11111110
Q ss_pred ----CCHHHHHHHHHHHHHhccC------CCCCCCCccC----cCccccHHHHHHhc---CC--CCCCcEEEEEcCchhh
Q 002663 236 ----YNKNDLLRTIIKEFHRLSK------HGRDGPDRHA----EGPLEGQKDVEHAL---LD--NKKCSRIIVTTRHMNV 296 (895)
Q Consensus 236 ----~~~~~l~~~i~~~l~~~~~------~~~~~~~~~~----~~~L~~~~~l~~~l---~~--~~~gs~iivTTR~~~v 296 (895)
-......+.+......... +.+....... ...-..+..+...+ .. ...+..||.||...+.
T Consensus 203 ~~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~ 282 (389)
T PRK03992 203 QKFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDI 282 (389)
T ss_pred HhhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChhh
Confidence 0112333333333221100 0000000000 00000111122222 11 1235667878876543
Q ss_pred hhhh--ccCCCcceeeccCCChhhHHHHHHHhhcCCC
Q 002663 297 AKFC--KSSSSVRIHELETLPPDEAWKLFCRKAFGPS 331 (895)
Q Consensus 297 ~~~~--~~~~~~~~~~l~~L~~~es~~Lf~~~a~~~~ 331 (895)
.+.. ....-+..++++..+.++..++|+.++.+..
T Consensus 283 ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~ 319 (389)
T PRK03992 283 LDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMN 319 (389)
T ss_pred CCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCC
Confidence 3321 1111235799999999999999998875543
No 113
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=97.16 E-value=0.00047 Score=66.73 Aligned_cols=53 Identities=36% Similarity=0.428 Sum_probs=37.3
Q ss_pred CCceeechhhHHHHHHHHhc---CCCCceEEEEEcCCCchhhHHHHHHhccccccCCC
Q 002663 170 DDEVVGIESIKDKLIDLMVN---GRSKSSVVAVVGEGGLGKTTLAGKLFNNEGLKTHF 224 (895)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~---~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F 224 (895)
-++|||-+..++.+.-++.. .++...-+-+||++|+||||||.-+++. ....|
T Consensus 23 L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e--~~~~~ 78 (233)
T PF05496_consen 23 LDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANE--LGVNF 78 (233)
T ss_dssp CCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHH--CT--E
T ss_pred HHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhc--cCCCe
Confidence 47899999999987766642 2345678899999999999999999994 55444
No 114
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=97.16 E-value=0.0041 Score=64.93 Aligned_cols=56 Identities=29% Similarity=0.401 Sum_probs=37.9
Q ss_pred ceEEEEEcCCCchhhHHHHHHhccccccCCCCceEEEEeCCCCCHHHHHHHHHHHHHhc
Q 002663 194 SSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRTIIKEFHRL 252 (895)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~l~~~i~~~l~~~ 252 (895)
..++.|+|++|+||||+++.+++.... ..+ ..+|+ +....+..+++..++..++..
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~-~~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~ 98 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQ-ERV-VAAKL-VNTRVDAEDLLRMVAADFGLE 98 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCC-CCe-EEeee-eCCCCCHHHHHHHHHHHcCCC
Confidence 458999999999999999999985321 111 12233 233456677888888776543
No 115
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.15 E-value=0.00067 Score=71.93 Aligned_cols=54 Identities=22% Similarity=0.158 Sum_probs=45.2
Q ss_pred ceEEEEEcCCCchhhHHHHHHhccccccCCCCceEEEEeCCC--CCHHHHHHHHHHH
Q 002663 194 SSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKE--YNKNDLLRTIIKE 248 (895)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~--~~~~~l~~~i~~~ 248 (895)
-+.++|+|++|.|||||++.+++.... .+|+..+||.+++. .++.++++.+...
T Consensus 168 Gq~~~IvG~~g~GKTtL~~~i~~~I~~-nhfdv~v~VlLIgER~~EVtDLqrsIlg~ 223 (415)
T TIGR00767 168 GQRGLIVAPPKAGKTVLLQKIAQAITR-NHPEVELIVLLIDERPEEVTDMQRSVKGE 223 (415)
T ss_pred CCEEEEECCCCCChhHHHHHHHHhhcc-cCCceEEEEEEcCCCCccHHHHHHHhhce
Confidence 468999999999999999999996332 36999999998866 7889999988643
No 116
>PRK05642 DNA replication initiation factor; Validated
Probab=97.04 E-value=0.0034 Score=63.41 Aligned_cols=127 Identities=8% Similarity=0.122 Sum_probs=66.0
Q ss_pred ceEEEEEcCCCchhhHHHHHHhccccccCCCCceEEEEeCCCCCHHHHHHHHHHHHHhccCCCCCCCCccCcCccccHHH
Q 002663 194 SSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRTIIKEFHRLSKHGRDGPDRHAEGPLEGQKD 273 (895)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~~~ 273 (895)
...+.|||..|+|||.||+++++. ....-..++|++...-... ...+.+.+....-- ...+......-..|..
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~--~~~~~~~v~y~~~~~~~~~---~~~~~~~~~~~d~L--iiDDi~~~~~~~~~~~ 117 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLR--FEQRGEPAVYLPLAELLDR---GPELLDNLEQYELV--CLDDLDVIAGKADWEE 117 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHhCCCcEEEeeHHHHHhh---hHHHHHhhhhCCEE--EEechhhhcCChHHHH
Confidence 367899999999999999999874 3322345667765321110 11222222111000 0000000000113322
Q ss_pred -HHHhcCC-CCCCcEEEEEcCchh--h-------hhhhccCCCcceeeccCCChhhHHHHHHHhhcCC
Q 002663 274 -VEHALLD-NKKCSRIIVTTRHMN--V-------AKFCKSSSSVRIHELETLPPDEAWKLFCRKAFGP 330 (895)
Q Consensus 274 -l~~~l~~-~~~gs~iivTTR~~~--v-------~~~~~~~~~~~~~~l~~L~~~es~~Lf~~~a~~~ 330 (895)
+...+.. ..+|..+|+||+... . ...+... .++++++++.++-.++++.++...
T Consensus 118 ~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~g---l~~~l~~~~~e~~~~il~~ka~~~ 182 (234)
T PRK05642 118 ALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLA---LVFQMRGLSDEDKLRALQLRASRR 182 (234)
T ss_pred HHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcC---eeeecCCCCHHHHHHHHHHHHHHc
Confidence 2222221 123567899887531 1 1122222 578999999999999999776543
No 117
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.04 E-value=0.0081 Score=68.24 Aligned_cols=152 Identities=17% Similarity=0.163 Sum_probs=86.6
Q ss_pred CCceeechhhHHHHHHHHhcCCCCceEEEEEcCCCchhhHHHHHHhcccccc-------------------CCCCceEEE
Q 002663 170 DDEVVGIESIKDKLIDLMVNGRSKSSVVAVVGEGGLGKTTLAGKLFNNEGLK-------------------THFSCRAWV 230 (895)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-------------------~~F~~~~wv 230 (895)
-+++||-+..++.+.+++..+. -.+.+.++|+.|+||||+|+.+.....-. ..|...+++
T Consensus 15 f~divGq~~v~~~L~~~i~~~~-~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ei 93 (527)
T PRK14969 15 FSELVGQEHVVRALTNALEQQR-LHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIEV 93 (527)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeEe
Confidence 3578999999999999988643 23567899999999999999987642110 123334455
Q ss_pred EeCCCCCHHHHHHHHHHHHHhccCCCCCCCCc---cCcCccc--cHHHHHHhcCCCCCCcEEEEEcCc-hhhhhhhccCC
Q 002663 231 TVGKEYNKNDLLRTIIKEFHRLSKHGRDGPDR---HAEGPLE--GQKDVEHALLDNKKCSRIIVTTRH-MNVAKFCKSSS 304 (895)
Q Consensus 231 ~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~---~~~~~L~--~~~~l~~~l~~~~~gs~iivTTR~-~~v~~~~~~~~ 304 (895)
+.+....+. ..+++++........ ..... +..+.+. ..+.+...+......+.+|++|.+ ..+......
T Consensus 94 ~~~~~~~vd-~ir~l~~~~~~~p~~--~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~~kil~tI~S-- 168 (527)
T PRK14969 94 DAASNTQVD-AMRELLDNAQYAPTR--GRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLS-- 168 (527)
T ss_pred eccccCCHH-HHHHHHHHHhhCccc--CCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCChhhCchhHHH--
Confidence 444333333 344555544322111 00000 1111221 344555556554445666665544 333322111
Q ss_pred CcceeeccCCChhhHHHHHHHhh
Q 002663 305 SVRIHELETLPPDEAWKLFCRKA 327 (895)
Q Consensus 305 ~~~~~~l~~L~~~es~~Lf~~~a 327 (895)
....++++.++.++-.+.+.+.+
T Consensus 169 Rc~~~~f~~l~~~~i~~~L~~il 191 (527)
T PRK14969 169 RCLQFNLKQMPPPLIVSHLQHIL 191 (527)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHH
Confidence 11688999999999888777654
No 118
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.04 E-value=0.0043 Score=68.23 Aligned_cols=153 Identities=14% Similarity=0.117 Sum_probs=85.7
Q ss_pred CCceeechhhHHHHHHHHhcCCCCceEEEEEcCCCchhhHHHHHHhccccccC---------------------------
Q 002663 170 DDEVVGIESIKDKLIDLMVNGRSKSSVVAVVGEGGLGKTTLAGKLFNNEGLKT--------------------------- 222 (895)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~--------------------------- 222 (895)
-++++|-+..++.+.+++..+. -.+.+.++|+.|+||||+|+.+.+...-..
T Consensus 15 ~~eiiGq~~~~~~L~~~~~~~~-~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~~~~ 93 (397)
T PRK14955 15 FADITAQEHITRTIQNSLRMGR-VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDFDAG 93 (397)
T ss_pred HhhccChHHHHHHHHHHHHhCC-cceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHHhcC
Confidence 3678999999999999887653 235688999999999999999887421111
Q ss_pred -CCCceEEEEeCCCCCHHHHHHHHHHHHHhccCCCCC-CCCccCcCccc--cHHHHHHhcCCCCCCcEEEEEc-Cchhhh
Q 002663 223 -HFSCRAWVTVGKEYNKNDLLRTIIKEFHRLSKHGRD-GPDRHAEGPLE--GQKDVEHALLDNKKCSRIIVTT-RHMNVA 297 (895)
Q Consensus 223 -~F~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~~~~-~~~~~~~~~L~--~~~~l~~~l~~~~~gs~iivTT-R~~~v~ 297 (895)
+++. ..++......+.++ +++.+.+.......+. .--.+..+.+. .++.+...+....+.+.+|++| +...+.
T Consensus 94 ~~~n~-~~~~~~~~~~id~I-r~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl~ 171 (397)
T PRK14955 94 TSLNI-SEFDAASNNSVDDI-RLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIP 171 (397)
T ss_pred CCCCe-EeecccccCCHHHH-HHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHhH
Confidence 1111 11221122223333 3455555322111000 00001111222 5666767776655566766555 444444
Q ss_pred hhhccCCCcceeeccCCChhhHHHHHHHhh
Q 002663 298 KFCKSSSSVRIHELETLPPDEAWKLFCRKA 327 (895)
Q Consensus 298 ~~~~~~~~~~~~~l~~L~~~es~~Lf~~~a 327 (895)
...... ..+++++++++++..+.+...+
T Consensus 172 ~tl~sR--~~~v~f~~l~~~ei~~~l~~~~ 199 (397)
T PRK14955 172 ATIASR--CQRFNFKRIPLEEIQQQLQGIC 199 (397)
T ss_pred HHHHHH--HHHhhcCCCCHHHHHHHHHHHH
Confidence 332211 1578899999999887777665
No 119
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=97.02 E-value=0.01 Score=64.81 Aligned_cols=153 Identities=14% Similarity=0.158 Sum_probs=86.3
Q ss_pred CCceeechhhHHHHHHHHhcCCCCceEEEEEcCCCchhhHHHHHHhccccc--c------------------CCCCceEE
Q 002663 170 DDEVVGIESIKDKLIDLMVNGRSKSSVVAVVGEGGLGKTTLAGKLFNNEGL--K------------------THFSCRAW 229 (895)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~--~------------------~~F~~~~w 229 (895)
-.++||.+..++.+.+.+..+. -.+.+-++|+.|+||||+|+.+.....- . .+++ .++
T Consensus 13 ~~~iig~~~~~~~l~~~~~~~~-~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~-~~~ 90 (355)
T TIGR02397 13 FEDVIGQEHIVQTLKNAIKNGR-IAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLD-VIE 90 (355)
T ss_pred HhhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCC-EEE
Confidence 3578999999999999987643 2357889999999999999888764110 0 1222 234
Q ss_pred EEeCCCCCHHHHHHHHHHHHHhccCCCCCCCCc---cCcCcc--ccHHHHHHhcCCCCCCcEEEEEcCchh-hhhhhccC
Q 002663 230 VTVGKEYNKNDLLRTIIKEFHRLSKHGRDGPDR---HAEGPL--EGQKDVEHALLDNKKCSRIIVTTRHMN-VAKFCKSS 303 (895)
Q Consensus 230 v~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~---~~~~~L--~~~~~l~~~l~~~~~gs~iivTTR~~~-v~~~~~~~ 303 (895)
++-....... -.+.+...+...... ..... +..+.+ ...+.+...+......+.+|++|.+.. +.......
T Consensus 91 ~~~~~~~~~~-~~~~l~~~~~~~p~~--~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~~l~~~l~sr 167 (355)
T TIGR02397 91 IDAASNNGVD-DIREILDNVKYAPSS--GKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTEPHKIPATILSR 167 (355)
T ss_pred eeccccCCHH-HHHHHHHHHhcCccc--CCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEEeCCHHHHHHHHHhh
Confidence 4333222222 234444443322111 00000 111112 234455556655455667667765443 33322221
Q ss_pred CCcceeeccCCChhhHHHHHHHhhcC
Q 002663 304 SSVRIHELETLPPDEAWKLFCRKAFG 329 (895)
Q Consensus 304 ~~~~~~~l~~L~~~es~~Lf~~~a~~ 329 (895)
...++.+++++++..+.+...+-.
T Consensus 168 --~~~~~~~~~~~~~l~~~l~~~~~~ 191 (355)
T TIGR02397 168 --CQRFDFKRIPLEDIVERLKKILDK 191 (355)
T ss_pred --eeEEEcCCCCHHHHHHHHHHHHHH
Confidence 157889999999988888876543
No 120
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.02 E-value=0.01 Score=67.68 Aligned_cols=153 Identities=18% Similarity=0.124 Sum_probs=86.7
Q ss_pred CCceeechhhHHHHHHHHhcCCCCceEEEEEcCCCchhhHHHHHHhccccccC---------------------CCCceE
Q 002663 170 DDEVVGIESIKDKLIDLMVNGRSKSSVVAVVGEGGLGKTTLAGKLFNNEGLKT---------------------HFSCRA 228 (895)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~---------------------~F~~~~ 228 (895)
-+++||-+..++.|.+++..+. -.+.+.++|+.|+||||+|+.+.....-.. ....++
T Consensus 12 f~eivGq~~i~~~L~~~i~~~r-~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~~dvi 90 (584)
T PRK14952 12 FAEVVGQEHVTEPLSSALDAGR-INHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGSIDVV 90 (584)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCCceEE
Confidence 3678999999999999998653 235678999999999999999887411000 011133
Q ss_pred EEEeCCCCCHHHHHHHHHHHHHhccCCCCCCCCc---cCcCcc--ccHHHHHHhcCCCCCCcEEEE-EcCchhhhhhhcc
Q 002663 229 WVTVGKEYNKNDLLRTIIKEFHRLSKHGRDGPDR---HAEGPL--EGQKDVEHALLDNKKCSRIIV-TTRHMNVAKFCKS 302 (895)
Q Consensus 229 wv~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~---~~~~~L--~~~~~l~~~l~~~~~gs~iiv-TTR~~~v~~~~~~ 302 (895)
.++.+....+.++ ++|.+.+...... ..... +..+.+ ...+.+...+..-.....+|+ ||....+......
T Consensus 91 eidaas~~gvd~i-Rel~~~~~~~P~~--~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kll~TI~S 167 (584)
T PRK14952 91 ELDAASHGGVDDT-RELRDRAFYAPAQ--SRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRS 167 (584)
T ss_pred EeccccccCHHHH-HHHHHHHHhhhhc--CCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhhHHHHHH
Confidence 4433333333333 4444443221100 00000 111111 145555556655554555555 5444555443322
Q ss_pred CCCcceeeccCCChhhHHHHHHHhhc
Q 002663 303 SSSVRIHELETLPPDEAWKLFCRKAF 328 (895)
Q Consensus 303 ~~~~~~~~l~~L~~~es~~Lf~~~a~ 328 (895)
- ...++...++.++..+.+.+.+-
T Consensus 168 R--c~~~~F~~l~~~~i~~~L~~i~~ 191 (584)
T PRK14952 168 R--THHYPFRLLPPRTMRALIARICE 191 (584)
T ss_pred h--ceEEEeeCCCHHHHHHHHHHHHH
Confidence 1 26899999999998888776554
No 121
>PRK06620 hypothetical protein; Validated
Probab=97.01 E-value=0.021 Score=56.62 Aligned_cols=133 Identities=14% Similarity=0.108 Sum_probs=67.6
Q ss_pred CCCceeechh--hHHHHHHHHhcCCC-C-ceEEEEEcCCCchhhHHHHHHhccccccCCCCceEEEEeCCCCCHHHHHHH
Q 002663 169 EDDEVVGIES--IKDKLIDLMVNGRS-K-SSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRT 244 (895)
Q Consensus 169 ~~~~~vGr~~--~~~~l~~~L~~~~~-~-~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~l~~~ 244 (895)
.++.+||-.. ....+.++-..... . .+.+-|||++|+|||+|++++++.. .. .++. ..+... .
T Consensus 15 fd~Fvvg~~N~~a~~~~~~~~~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~--~~-----~~~~--~~~~~~----~ 81 (214)
T PRK06620 15 PDEFIVSSSNDQAYNIIKNWQCGFGVNPYKFTLLIKGPSSSGKTYLTKIWQNLS--NA-----YIIK--DIFFNE----E 81 (214)
T ss_pred chhhEecccHHHHHHHHHHHHHccccCCCcceEEEECCCCCCHHHHHHHHHhcc--CC-----EEcc--hhhhch----h
Confidence 3455677622 33444444321111 1 2568999999999999999988742 11 2222 110000 1
Q ss_pred HHHHHHhccCCCCCCCCccCcCccccHHH--HHHhcCC-CCCCcEEEEEcCchh-------hhhhhccCCCcceeeccCC
Q 002663 245 IIKEFHRLSKHGRDGPDRHAEGPLEGQKD--VEHALLD-NKKCSRIIVTTRHMN-------VAKFCKSSSSVRIHELETL 314 (895)
Q Consensus 245 i~~~l~~~~~~~~~~~~~~~~~~L~~~~~--l~~~l~~-~~~gs~iivTTR~~~-------v~~~~~~~~~~~~~~l~~L 314 (895)
..++. +.-..+.++.|.+ +-..+.. ...|..||+|++... +...+... -+++++++
T Consensus 82 ~~~~~-----------d~lliDdi~~~~~~~lf~l~N~~~e~g~~ilits~~~p~~l~l~~L~SRl~~g---l~~~l~~p 147 (214)
T PRK06620 82 ILEKY-----------NAFIIEDIENWQEPALLHIFNIINEKQKYLLLTSSDKSRNFTLPDLSSRIKSV---LSILLNSP 147 (214)
T ss_pred HHhcC-----------CEEEEeccccchHHHHHHHHHHHHhcCCEEEEEcCCCccccchHHHHHHHhCC---ceEeeCCC
Confidence 11000 0001112222321 1111110 134668999987432 22233222 58999999
Q ss_pred ChhhHHHHHHHhhc
Q 002663 315 PPDEAWKLFCRKAF 328 (895)
Q Consensus 315 ~~~es~~Lf~~~a~ 328 (895)
+.++-.+++.+.+-
T Consensus 148 d~~~~~~~l~k~~~ 161 (214)
T PRK06620 148 DDELIKILIFKHFS 161 (214)
T ss_pred CHHHHHHHHHHHHH
Confidence 99998888877764
No 122
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=96.99 E-value=0.0094 Score=64.77 Aligned_cols=151 Identities=14% Similarity=0.121 Sum_probs=85.1
Q ss_pred CceeechhhHHHHHHHHhcCCC--------CceEEEEEcCCCchhhHHHHHHhcccccc------------------CCC
Q 002663 171 DEVVGIESIKDKLIDLMVNGRS--------KSSVVAVVGEGGLGKTTLAGKLFNNEGLK------------------THF 224 (895)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~--------~~~vv~I~G~gGiGKTtLA~~v~~~~~~~------------------~~F 224 (895)
++++|-+..++.+.+.+..+.. -.+.+.++|+.|+||||+|+.+....--. ..+
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~h 84 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTH 84 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 4689999999999999986531 24678899999999999999987631000 111
Q ss_pred CceEEEEeC-CCCCHHHHHHHHHHHHHhccCCCCCCCCc---cCcCccc--cHHHHHHhcCCCCCCcEEEEEcCch-hhh
Q 002663 225 SCRAWVTVG-KEYNKNDLLRTIIKEFHRLSKHGRDGPDR---HAEGPLE--GQKDVEHALLDNKKCSRIIVTTRHM-NVA 297 (895)
Q Consensus 225 ~~~~wv~~~-~~~~~~~l~~~i~~~l~~~~~~~~~~~~~---~~~~~L~--~~~~l~~~l~~~~~gs~iivTTR~~-~v~ 297 (895)
....++.-. ....+.+ .+.+.+.+...... ..... +..+.+. ..+.+...+....++..+|++|.+. .+.
T Consensus 85 pD~~~i~~~~~~i~i~~-iR~l~~~~~~~p~~--~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~~~~ll 161 (394)
T PRK07940 85 PDVRVVAPEGLSIGVDE-VRELVTIAARRPST--GRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSPEDVL 161 (394)
T ss_pred CCEEEeccccccCCHHH-HHHHHHHHHhCccc--CCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECChHHCh
Confidence 122233221 2233333 34555555432111 00000 1111111 3334444554445566666666553 444
Q ss_pred hhhccCCCcceeeccCCChhhHHHHHHHh
Q 002663 298 KFCKSSSSVRIHELETLPPDEAWKLFCRK 326 (895)
Q Consensus 298 ~~~~~~~~~~~~~l~~L~~~es~~Lf~~~ 326 (895)
.....- ...+.+++++.++..+.+...
T Consensus 162 pTIrSR--c~~i~f~~~~~~~i~~~L~~~ 188 (394)
T PRK07940 162 PTIRSR--CRHVALRTPSVEAVAEVLVRR 188 (394)
T ss_pred HHHHhh--CeEEECCCCCHHHHHHHHHHh
Confidence 443321 268999999999998888744
No 123
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.99 E-value=0.00083 Score=62.87 Aligned_cols=12 Identities=25% Similarity=0.512 Sum_probs=5.2
Q ss_pred ccccCcEEEEEc
Q 002663 832 HLRNLELFTFHD 843 (895)
Q Consensus 832 ~l~~L~~L~l~~ 843 (895)
.+|+|+.||+..
T Consensus 138 klp~l~~LDF~k 149 (233)
T KOG1644|consen 138 KLPSLRTLDFQK 149 (233)
T ss_pred ecCcceEeehhh
Confidence 344444444444
No 124
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=96.94 E-value=0.0091 Score=68.47 Aligned_cols=152 Identities=16% Similarity=0.147 Sum_probs=87.4
Q ss_pred CCceeechhhHHHHHHHHhcCCCCceEEEEEcCCCchhhHHHHHHhcccccc-------------------CCCCceEEE
Q 002663 170 DDEVVGIESIKDKLIDLMVNGRSKSSVVAVVGEGGLGKTTLAGKLFNNEGLK-------------------THFSCRAWV 230 (895)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-------------------~~F~~~~wv 230 (895)
-+++||-+..++.+.+.+..+. -.+.+.++|..|+||||+|+.+.+...-. +.|...+.+
T Consensus 15 f~divGQe~vv~~L~~~l~~~r-l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~~g~~~D~iei 93 (647)
T PRK07994 15 FAEVVGQEHVLTALANALDLGR-LHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIEQGRFVDLIEI 93 (647)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHcCCCCCceee
Confidence 3678999999999999987653 23567899999999999999998742110 112223444
Q ss_pred EeCCCCCHHHHHHHHHHHHHhccCCCCCCCCc---cCcCcc--ccHHHHHHhcCCCCCCcEEEEEcCc-hhhhhhhccCC
Q 002663 231 TVGKEYNKNDLLRTIIKEFHRLSKHGRDGPDR---HAEGPL--EGQKDVEHALLDNKKCSRIIVTTRH-MNVAKFCKSSS 304 (895)
Q Consensus 231 ~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~---~~~~~L--~~~~~l~~~l~~~~~gs~iivTTR~-~~v~~~~~~~~ 304 (895)
+......+.+ .+++.+.+...... ..... +..+.| ...+.+...+..-....++|.+|.+ ..+......-
T Consensus 94 daas~~~Vdd-iR~li~~~~~~p~~--g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~TI~SR- 169 (647)
T PRK07994 94 DAASRTKVED-TRELLDNVQYAPAR--GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR- 169 (647)
T ss_pred cccccCCHHH-HHHHHHHHHhhhhc--CCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccchHHHhh-
Confidence 4332233333 45565554432111 00000 111111 1444455555444445555555444 4444332221
Q ss_pred CcceeeccCCChhhHHHHHHHhh
Q 002663 305 SVRIHELETLPPDEAWKLFCRKA 327 (895)
Q Consensus 305 ~~~~~~l~~L~~~es~~Lf~~~a 327 (895)
...|.+++++.++..+.+.+..
T Consensus 170 -C~~~~f~~Ls~~ei~~~L~~il 191 (647)
T PRK07994 170 -CLQFHLKALDVEQIRQQLEHIL 191 (647)
T ss_pred -heEeeCCCCCHHHHHHHHHHHH
Confidence 2689999999999998887754
No 125
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=96.93 E-value=0.016 Score=63.55 Aligned_cols=155 Identities=15% Similarity=0.168 Sum_probs=81.1
Q ss_pred CceeechhhHHHHHHHHhcC-----------CCCceEEEEEcCCCchhhHHHHHHhccccccCCCCceEEEEeCCC---C
Q 002663 171 DEVVGIESIKDKLIDLMVNG-----------RSKSSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKE---Y 236 (895)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~---~ 236 (895)
.++.|.++.++++.+.+... -...+-|.++|++|.|||++|+++++. ....| +.+..+.- +
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~e--l~~~f---i~V~~seL~~k~ 257 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANE--TSATF---LRVVGSELIQKY 257 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHh--hCCCE---EEEecchhhhhh
Confidence 56789999999999887521 123456889999999999999999994 44444 12221111 1
Q ss_pred --CHHHHHHHHHHHHHhccCC------------CCCCCCccCcCcc-ccHHHHHHhcCC--CCCCcEEEEEcCchhhhhh
Q 002663 237 --NKNDLLRTIIKEFHRLSKH------------GRDGPDRHAEGPL-EGQKDVEHALLD--NKKCSRIIVTTRHMNVAKF 299 (895)
Q Consensus 237 --~~~~l~~~i~~~l~~~~~~------------~~~~~~~~~~~~L-~~~~~l~~~l~~--~~~gs~iivTTR~~~v~~~ 299 (895)
......+.+.......... ............. ...-.+...+.+ ...+-+||+||...+..+.
T Consensus 258 ~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~LDp 337 (438)
T PTZ00361 258 LGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIESLDP 337 (438)
T ss_pred cchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHHhhH
Confidence 1122233333222111000 0000000000000 001111111111 1235678888886554433
Q ss_pred h--ccCCCcceeeccCCChhhHHHHHHHhhcCC
Q 002663 300 C--KSSSSVRIHELETLPPDEAWKLFCRKAFGP 330 (895)
Q Consensus 300 ~--~~~~~~~~~~l~~L~~~es~~Lf~~~a~~~ 330 (895)
. ........+++...+.++..++|..++.+.
T Consensus 338 aLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~ 370 (438)
T PTZ00361 338 ALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKM 370 (438)
T ss_pred HhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcC
Confidence 1 112223688999999999999999886544
No 126
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=96.93 E-value=0.0043 Score=66.45 Aligned_cols=146 Identities=18% Similarity=0.226 Sum_probs=79.6
Q ss_pred CCCceeechhhHHHHHHHHhcCCCCceEEEEEcCCCchhhHHHHHHhccccccCCCCceEEEEeCCCCCHHHHHHHHHHH
Q 002663 169 EDDEVVGIESIKDKLIDLMVNGRSKSSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRTIIKE 248 (895)
Q Consensus 169 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~l~~~i~~~ 248 (895)
.-++++|.++..+.+..++..+. -..++.++|++|+||||+|+++++. ... ....++.+. .... ..+..+..
T Consensus 19 ~~~~~~~~~~~~~~l~~~~~~~~-~~~~lll~G~~G~GKT~la~~l~~~--~~~---~~~~i~~~~-~~~~-~i~~~l~~ 90 (316)
T PHA02544 19 TIDECILPAADKETFKSIVKKGR-IPNMLLHSPSPGTGKTTVAKALCNE--VGA---EVLFVNGSD-CRID-FVRNRLTR 90 (316)
T ss_pred cHHHhcCcHHHHHHHHHHHhcCC-CCeEEEeeCcCCCCHHHHHHHHHHH--hCc---cceEeccCc-ccHH-HHHHHHHH
Confidence 34678999999999999997643 3467778999999999999999984 222 223444444 2222 22222222
Q ss_pred HHhccCCCCCCCCc---cCcCcc--c-cHHHHHHhcCCCCCCcEEEEEcCchh-hhhhhccCCCcceeeccCCChhhHHH
Q 002663 249 FHRLSKHGRDGPDR---HAEGPL--E-GQKDVEHALLDNKKCSRIIVTTRHMN-VAKFCKSSSSVRIHELETLPPDEAWK 321 (895)
Q Consensus 249 l~~~~~~~~~~~~~---~~~~~L--~-~~~~l~~~l~~~~~gs~iivTTR~~~-v~~~~~~~~~~~~~~l~~L~~~es~~ 321 (895)
........ ..... +..+.+ . ..+.+...+.....++++|+||.... +....... ...+.++..+.++..+
T Consensus 91 ~~~~~~~~-~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR--~~~i~~~~p~~~~~~~ 167 (316)
T PHA02544 91 FASTVSLT-GGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSR--CRVIDFGVPTKEEQIE 167 (316)
T ss_pred HHHhhccc-CCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhh--ceEEEeCCCCHHHHHH
Confidence 21111000 00000 111112 1 22233334444455778999887543 21211111 1467777778888766
Q ss_pred HHHH
Q 002663 322 LFCR 325 (895)
Q Consensus 322 Lf~~ 325 (895)
++..
T Consensus 168 il~~ 171 (316)
T PHA02544 168 MMKQ 171 (316)
T ss_pred HHHH
Confidence 6543
No 127
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=96.92 E-value=0.011 Score=67.88 Aligned_cols=155 Identities=18% Similarity=0.154 Sum_probs=89.4
Q ss_pred CCCceeechhhHHHHHHHHhcCCCCceEEEEEcCCCchhhHHHHHHhccccccCC------------------------C
Q 002663 169 EDDEVVGIESIKDKLIDLMVNGRSKSSVVAVVGEGGLGKTTLAGKLFNNEGLKTH------------------------F 224 (895)
Q Consensus 169 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~------------------------F 224 (895)
.-+++||.+..++.+.+.+..+. -.+.+-++|+.|+||||+|+.+.+...-... .
T Consensus 22 ~f~dliGq~~~v~~L~~~~~~gr-i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~C~~i~~g~h 100 (598)
T PRK09111 22 TFDDLIGQEAMVRTLTNAFETGR-IAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEHCQAIMEGRH 100 (598)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHHHHHHhcCCC
Confidence 34689999999999999998653 2457889999999999999999874211110 1
Q ss_pred CceEEEEeCCCCCHHHHHHHHHHHHHhccCCCCCCCCc---cCcCccc--cHHHHHHhcCCCCCCcEEEEEc-Cchhhhh
Q 002663 225 SCRAWVTVGKEYNKNDLLRTIIKEFHRLSKHGRDGPDR---HAEGPLE--GQKDVEHALLDNKKCSRIIVTT-RHMNVAK 298 (895)
Q Consensus 225 ~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~---~~~~~L~--~~~~l~~~l~~~~~gs~iivTT-R~~~v~~ 298 (895)
..+++++......+.+ .++|.+.+...... ..... +..+.+. ..+.+...+..-...+++|++| ....+..
T Consensus 101 ~Dv~e~~a~s~~gvd~-IReIie~~~~~P~~--a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kll~ 177 (598)
T PRK09111 101 VDVLEMDAASHTGVDD-IREIIESVRYRPVS--ARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVPV 177 (598)
T ss_pred CceEEecccccCCHHH-HHHHHHHHHhchhc--CCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhhhH
Confidence 1123443333333433 34555554322111 00000 0011121 3445555665555566666554 4444443
Q ss_pred hhccCCCcceeeccCCChhhHHHHHHHhhcC
Q 002663 299 FCKSSSSVRIHELETLPPDEAWKLFCRKAFG 329 (895)
Q Consensus 299 ~~~~~~~~~~~~l~~L~~~es~~Lf~~~a~~ 329 (895)
..... ...++++.++.++....+.+.+-.
T Consensus 178 tI~SR--cq~~~f~~l~~~el~~~L~~i~~k 206 (598)
T PRK09111 178 TVLSR--CQRFDLRRIEADVLAAHLSRIAAK 206 (598)
T ss_pred HHHhh--eeEEEecCCCHHHHHHHHHHHHHH
Confidence 33221 268999999999988888776543
No 128
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=96.88 E-value=0.011 Score=65.98 Aligned_cols=158 Identities=15% Similarity=0.152 Sum_probs=82.7
Q ss_pred CCCceeechhhHHHHHHHHhcC-----------CCCceEEEEEcCCCchhhHHHHHHhccccccCC-----CCceEEEEe
Q 002663 169 EDDEVVGIESIKDKLIDLMVNG-----------RSKSSVVAVVGEGGLGKTTLAGKLFNNEGLKTH-----FSCRAWVTV 232 (895)
Q Consensus 169 ~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~-----F~~~~wv~~ 232 (895)
.-.++.|.++.++++.+.+... -...+-|.++|++|.|||++|+++++. .... +....|+.+
T Consensus 180 ~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~e--L~~~i~~~~~~~~~fl~v 257 (512)
T TIGR03689 180 TYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANS--LAQRIGAETGDKSYFLNI 257 (512)
T ss_pred CHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHh--hccccccccCCceeEEec
Confidence 3456889999999998886421 122456899999999999999999995 3322 223445554
Q ss_pred CCC-----C--CHHHHHHHHHHHHHhccCCCCC-CC--Cc-cC---------cCccc--cHHHHHHhcCCCC--CCcEEE
Q 002663 233 GKE-----Y--NKNDLLRTIIKEFHRLSKHGRD-GP--DR-HA---------EGPLE--GQKDVEHALLDNK--KCSRII 288 (895)
Q Consensus 233 ~~~-----~--~~~~l~~~i~~~l~~~~~~~~~-~~--~~-~~---------~~~L~--~~~~l~~~l~~~~--~gs~ii 288 (895)
... + .....++.+.+........... .. +. +. ..... ....+...+.+.. .+..||
T Consensus 258 ~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~ViVI 337 (512)
T TIGR03689 258 KGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDNVIVI 337 (512)
T ss_pred cchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCceEEE
Confidence 321 1 1122233333332211000000 00 00 00 00000 1112222222221 244566
Q ss_pred EEcCchhhhhh--hccCCCcceeeccCCChhhHHHHHHHhhc
Q 002663 289 VTTRHMNVAKF--CKSSSSVRIHELETLPPDEAWKLFCRKAF 328 (895)
Q Consensus 289 vTTR~~~v~~~--~~~~~~~~~~~l~~L~~~es~~Lf~~~a~ 328 (895)
.||...+..+. .....-+..++++..+.++..++|..+.-
T Consensus 338 ~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~ 379 (512)
T TIGR03689 338 GASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLT 379 (512)
T ss_pred eccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhh
Confidence 67765544332 11122235799999999999999998863
No 129
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=96.86 E-value=0.0061 Score=63.00 Aligned_cols=47 Identities=26% Similarity=0.359 Sum_probs=34.7
Q ss_pred CceeechhhHHHHHHHHhc----------C---CCCceEEEEEcCCCchhhHHHHHHhcc
Q 002663 171 DEVVGIESIKDKLIDLMVN----------G---RSKSSVVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~----------~---~~~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
..+||.+..+++|.+.... + .+...-+.++|++|+||||+|+.+++.
T Consensus 6 ~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~ 65 (261)
T TIGR02881 6 SRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKL 65 (261)
T ss_pred HHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHH
Confidence 4589998888777644321 1 223456889999999999999999863
No 130
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.86 E-value=0.016 Score=63.53 Aligned_cols=155 Identities=17% Similarity=0.204 Sum_probs=84.4
Q ss_pred CCceeechhhHHHHHHHHhcCCCCceEEEEEcCCCchhhHHHHHHhccccc------cCCCCceE-EEEeCCCCCHHHHH
Q 002663 170 DDEVVGIESIKDKLIDLMVNGRSKSSVVAVVGEGGLGKTTLAGKLFNNEGL------KTHFSCRA-WVTVGKEYNKNDLL 242 (895)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~------~~~F~~~~-wv~~~~~~~~~~l~ 242 (895)
-++++|.+..++.+.+.+..+. -.+.+.++|+.|+||||+|+.+.+...- ...|...+ -++........+ .
T Consensus 16 ~~~iig~~~~~~~l~~~i~~~~-~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-i 93 (367)
T PRK14970 16 FDDVVGQSHITNTLLNAIENNH-LAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVDD-I 93 (367)
T ss_pred HHhcCCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHHH-H
Confidence 3678999999999999997643 2468889999999999999999874211 11222221 122122222222 3
Q ss_pred HHHHHHHHhccCCCCCCCCc---cCcCccc--cHHHHHHhcCCCCCCcEEEEEc-CchhhhhhhccCCCcceeeccCCCh
Q 002663 243 RTIIKEFHRLSKHGRDGPDR---HAEGPLE--GQKDVEHALLDNKKCSRIIVTT-RHMNVAKFCKSSSSVRIHELETLPP 316 (895)
Q Consensus 243 ~~i~~~l~~~~~~~~~~~~~---~~~~~L~--~~~~l~~~l~~~~~gs~iivTT-R~~~v~~~~~~~~~~~~~~l~~L~~ 316 (895)
+.+.+++...... ..... +..+.+. .++.+...+......+.+|++| ....+....... ..+++.+++++
T Consensus 94 ~~l~~~~~~~p~~--~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~sr--~~~v~~~~~~~ 169 (367)
T PRK14970 94 RNLIDQVRIPPQT--GKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSR--CQIFDFKRITI 169 (367)
T ss_pred HHHHHHHhhcccc--CCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHHhc--ceeEecCCccH
Confidence 3444443221100 00000 0011111 3445555554434445555555 333333322211 15789999999
Q ss_pred hhHHHHHHHhhcCC
Q 002663 317 DEAWKLFCRKAFGP 330 (895)
Q Consensus 317 ~es~~Lf~~~a~~~ 330 (895)
++....+...+...
T Consensus 170 ~~l~~~l~~~~~~~ 183 (367)
T PRK14970 170 KDIKEHLAGIAVKE 183 (367)
T ss_pred HHHHHHHHHHHHHc
Confidence 99888888766443
No 131
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=96.85 E-value=0.012 Score=69.86 Aligned_cols=152 Identities=16% Similarity=0.122 Sum_probs=87.3
Q ss_pred CCceeechhhHHHHHHHHhcCCCCceEEEEEcCCCchhhHHHHHHhccccccC---------------------CCCceE
Q 002663 170 DDEVVGIESIKDKLIDLMVNGRSKSSVVAVVGEGGLGKTTLAGKLFNNEGLKT---------------------HFSCRA 228 (895)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~---------------------~F~~~~ 228 (895)
-.++||-+..++.|...+..+. -.+.+.++|+.|+||||+|+.+.+...-.. .+..++
T Consensus 14 f~eiiGqe~v~~~L~~~i~~~r-i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~dv~ 92 (824)
T PRK07764 14 FAEVIGQEHVTEPLSTALDSGR-INHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLDVT 92 (824)
T ss_pred HHHhcCcHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCcEE
Confidence 3678999999999999998653 235788999999999999999877421100 011123
Q ss_pred EEEeCCCCCHHHHHHHHHHHHHhccCCCCCCCCc---cCcCcc--ccHHHHHHhcCCCCCCcEEEEEcC-chhhhhhhcc
Q 002663 229 WVTVGKEYNKNDLLRTIIKEFHRLSKHGRDGPDR---HAEGPL--EGQKDVEHALLDNKKCSRIIVTTR-HMNVAKFCKS 302 (895)
Q Consensus 229 wv~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~---~~~~~L--~~~~~l~~~l~~~~~gs~iivTTR-~~~v~~~~~~ 302 (895)
+++-.....+.++ +++.+.+...... ..... +..+.| ..++.|...+..-...+.+|++|. ...+...+..
T Consensus 93 eidaas~~~Vd~i-R~l~~~~~~~p~~--~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl~TIrS 169 (824)
T PRK07764 93 EIDAASHGGVDDA-RELRERAFFAPAE--SRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVIGTIRS 169 (824)
T ss_pred EecccccCCHHHH-HHHHHHHHhchhc--CCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHh
Confidence 4433333334443 3344443322111 00000 111111 255566666666555666665554 3345443332
Q ss_pred CCCcceeeccCCChhhHHHHHHHhh
Q 002663 303 SSSVRIHELETLPPDEAWKLFCRKA 327 (895)
Q Consensus 303 ~~~~~~~~l~~L~~~es~~Lf~~~a 327 (895)
- ...|++..++.++-.+.+.+..
T Consensus 170 R--c~~v~F~~l~~~~l~~~L~~il 192 (824)
T PRK07764 170 R--THHYPFRLVPPEVMRGYLERIC 192 (824)
T ss_pred h--eeEEEeeCCCHHHHHHHHHHHH
Confidence 2 2689999999998887776654
No 132
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.85 E-value=0.017 Score=66.33 Aligned_cols=152 Identities=14% Similarity=0.099 Sum_probs=84.2
Q ss_pred CCceeechhhHHHHHHHHhcCCCCceEEEEEcCCCchhhHHHHHHhcccccc----------------------------
Q 002663 170 DDEVVGIESIKDKLIDLMVNGRSKSSVVAVVGEGGLGKTTLAGKLFNNEGLK---------------------------- 221 (895)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~---------------------------- 221 (895)
-.++||-+..++.+.+.+..+. -.+.+.++|+.|+||||+|+.+.+...-.
T Consensus 15 f~eivGQe~i~~~L~~~i~~~r-i~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~g 93 (620)
T PRK14954 15 FADITAQEHITHTIQNSLRMDR-VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDFDAG 93 (620)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHHhcc
Confidence 3678999999999999887643 23568899999999999998887642111
Q ss_pred CCCCceEEEEeCCCCCHHHHHHHHHHHHHhccCCCCCCCCc---cCcCcc--ccHHHHHHhcCCCCCCcEEEEEc-Cchh
Q 002663 222 THFSCRAWVTVGKEYNKNDLLRTIIKEFHRLSKHGRDGPDR---HAEGPL--EGQKDVEHALLDNKKCSRIIVTT-RHMN 295 (895)
Q Consensus 222 ~~F~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~---~~~~~L--~~~~~l~~~l~~~~~gs~iivTT-R~~~ 295 (895)
.+|+.. .++......+.++ +.+.+.+...... ..... +..+.+ ...+.+...+..-...+.+|++| +...
T Consensus 94 ~~~n~~-~~d~~s~~~vd~I-r~l~e~~~~~P~~--~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~k 169 (620)
T PRK14954 94 TSLNIS-EFDAASNNSVDDI-RQLRENVRYGPQK--GRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHK 169 (620)
T ss_pred CCCCeE-EecccccCCHHHH-HHHHHHHHhhhhc--CCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhh
Confidence 122221 1121122223333 3444544322111 00000 011111 13455666665554455555444 4445
Q ss_pred hhhhhccCCCcceeeccCCChhhHHHHHHHhhc
Q 002663 296 VAKFCKSSSSVRIHELETLPPDEAWKLFCRKAF 328 (895)
Q Consensus 296 v~~~~~~~~~~~~~~l~~L~~~es~~Lf~~~a~ 328 (895)
+....... ..++++++++.++....+.+.+-
T Consensus 170 Ll~TI~SR--c~~vef~~l~~~ei~~~L~~i~~ 200 (620)
T PRK14954 170 IPATIASR--CQRFNFKRIPLDEIQSQLQMICR 200 (620)
T ss_pred hhHHHHhh--ceEEecCCCCHHHHHHHHHHHHH
Confidence 54433221 26899999999998777766543
No 133
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.81 E-value=0.00096 Score=70.04 Aligned_cols=47 Identities=17% Similarity=0.405 Sum_probs=40.6
Q ss_pred CceeechhhHHHHHHHHhcC----CCCceEEEEEcCCCchhhHHHHHHhcc
Q 002663 171 DEVVGIESIKDKLIDLMVNG----RSKSSVVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~----~~~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
++++|.++.++++++++... +..-++++++|++|.||||||+++.+.
T Consensus 51 ~~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~ 101 (361)
T smart00763 51 HDFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRG 101 (361)
T ss_pred hhccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999998653 234579999999999999999999985
No 134
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.77 E-value=0.021 Score=64.98 Aligned_cols=154 Identities=14% Similarity=0.071 Sum_probs=85.9
Q ss_pred CCceeechhhHHHHHHHHhcCCCCceEEEEEcCCCchhhHHHHHHhccccccCC-------------------CCceEEE
Q 002663 170 DDEVVGIESIKDKLIDLMVNGRSKSSVVAVVGEGGLGKTTLAGKLFNNEGLKTH-------------------FSCRAWV 230 (895)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~-------------------F~~~~wv 230 (895)
-+++||-+..++.+.+.+..+. -.+.+.++|+.|+||||+|+.+.+...-... ...++++
T Consensus 15 f~dIiGQe~v~~~L~~ai~~~r-i~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~hpDv~eI 93 (624)
T PRK14959 15 FAEVAGQETVKAILSRAAQENR-VAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHVDVVEI 93 (624)
T ss_pred HHHhcCCHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCCCceEEE
Confidence 3578999988888888887642 2467889999999999999999875211110 1113344
Q ss_pred EeCCCCCHHHHHHHHHHHHHhccCCCCCCCCc---cCcCcc--ccHHHHHHhcCCCCCCcEEEEEcCc-hhhhhhhccCC
Q 002663 231 TVGKEYNKNDLLRTIIKEFHRLSKHGRDGPDR---HAEGPL--EGQKDVEHALLDNKKCSRIIVTTRH-MNVAKFCKSSS 304 (895)
Q Consensus 231 ~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~---~~~~~L--~~~~~l~~~l~~~~~gs~iivTTR~-~~v~~~~~~~~ 304 (895)
+......+.++ +.+.+.+...... ..... +..+.+ ..++.+...+..-.....+|++|.+ ..+......-
T Consensus 94 d~a~~~~Id~i-R~L~~~~~~~p~~--g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~TI~SR- 169 (624)
T PRK14959 94 DGASNRGIDDA-KRLKEAIGYAPME--GRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTIVSR- 169 (624)
T ss_pred ecccccCHHHH-HHHHHHHHhhhhc--CCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhHHHHhh-
Confidence 33323333332 3344444322111 00000 111112 1344555555443344556665544 4444332211
Q ss_pred CcceeeccCCChhhHHHHHHHhhcC
Q 002663 305 SVRIHELETLPPDEAWKLFCRKAFG 329 (895)
Q Consensus 305 ~~~~~~l~~L~~~es~~Lf~~~a~~ 329 (895)
...+++++++.++..+.+...+..
T Consensus 170 -cq~i~F~pLs~~eL~~~L~~il~~ 193 (624)
T PRK14959 170 -CQHFTFTRLSEAGLEAHLTKVLGR 193 (624)
T ss_pred -hhccccCCCCHHHHHHHHHHHHHH
Confidence 157899999999998888876544
No 135
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=96.74 E-value=0.0057 Score=70.50 Aligned_cols=81 Identities=11% Similarity=0.085 Sum_probs=59.9
Q ss_pred CCceeechhhHHHHHHHHhcC---CCCceEEEEEcCCCchhhHHHHHHhccccc---cCCCC--ceEEEEeCCCCCHHHH
Q 002663 170 DDEVVGIESIKDKLIDLMVNG---RSKSSVVAVVGEGGLGKTTLAGKLFNNEGL---KTHFS--CRAWVTVGKEYNKNDL 241 (895)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~~---~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~---~~~F~--~~~wv~~~~~~~~~~l 241 (895)
++.++|||+++++|...|... .....++-|+|++|.|||+.++.|.+.... ....+ .+++|++....+...+
T Consensus 754 PD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sI 833 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAA 833 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHH
Confidence 467899999999999998642 223467789999999999999999874211 11222 2467777776778888
Q ss_pred HHHHHHHHH
Q 002663 242 LRTIIKEFH 250 (895)
Q Consensus 242 ~~~i~~~l~ 250 (895)
...|..++.
T Consensus 834 YqvI~qqL~ 842 (1164)
T PTZ00112 834 YQVLYKQLF 842 (1164)
T ss_pred HHHHHHHHc
Confidence 888888874
No 136
>CHL00181 cbbX CbbX; Provisional
Probab=96.72 E-value=0.019 Score=59.88 Aligned_cols=47 Identities=28% Similarity=0.473 Sum_probs=33.7
Q ss_pred CceeechhhHHHHHHHHhc----------C---CCCceEEEEEcCCCchhhHHHHHHhcc
Q 002663 171 DEVVGIESIKDKLIDLMVN----------G---RSKSSVVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~----------~---~~~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
.+++|.++.+++|.++... + ......+.++|.+|+||||+|+.++..
T Consensus 23 ~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~ 82 (287)
T CHL00181 23 EELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADI 82 (287)
T ss_pred HhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 4688988888876655321 1 112335789999999999999999773
No 137
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=96.72 E-value=0.027 Score=56.26 Aligned_cols=153 Identities=14% Similarity=0.158 Sum_probs=73.0
Q ss_pred CCceeechhh-HHHHHHHHhcC-CCCceEEEEEcCCCchhhHHHHHHhccccccCCCCceEEEEeCCCCCHHHHHHHHHH
Q 002663 170 DDEVVGIESI-KDKLIDLMVNG-RSKSSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRTIIK 247 (895)
Q Consensus 170 ~~~~vGr~~~-~~~l~~~L~~~-~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~l~~~i~~ 247 (895)
++.++|-... .-.....+... +.....+-|||..|+|||.|.+++++.......-..++|++ ..++...+..
T Consensus 8 dnfv~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~------~~~f~~~~~~ 81 (219)
T PF00308_consen 8 DNFVVGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS------AEEFIREFAD 81 (219)
T ss_dssp CCS--TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE------HHHHHHHHHH
T ss_pred ccCCcCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec------HHHHHHHHHH
Confidence 3444564332 23333444433 33455789999999999999999999522111112345654 3345554444
Q ss_pred HHHhccCC----CCCCCCc---cCcCccc---cHHH-HHHhcCC-CCCCcEEEEEcCch---------hhhhhhccCCCc
Q 002663 248 EFHRLSKH----GRDGPDR---HAEGPLE---GQKD-VEHALLD-NKKCSRIIVTTRHM---------NVAKFCKSSSSV 306 (895)
Q Consensus 248 ~l~~~~~~----~~~~~~~---~~~~~L~---~~~~-l~~~l~~-~~~gs~iivTTR~~---------~v~~~~~~~~~~ 306 (895)
.+...... .-...+. +..+.+. .|.. +-..+.. ...|-+||+|++.. ++...+...
T Consensus 82 ~~~~~~~~~~~~~~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~G--- 158 (219)
T PF00308_consen 82 ALRDGEIEEFKDRLRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWG--- 158 (219)
T ss_dssp HHHTTSHHHHHHHHCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCS---
T ss_pred HHHcccchhhhhhhhcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhc---
Confidence 43221000 0000000 0111121 1211 1111111 12356899999542 222333333
Q ss_pred ceeeccCCChhhHHHHHHHhhcCCC
Q 002663 307 RIHELETLPPDEAWKLFCRKAFGPS 331 (895)
Q Consensus 307 ~~~~l~~L~~~es~~Lf~~~a~~~~ 331 (895)
-++++++++.++..+++.++|-...
T Consensus 159 l~~~l~~pd~~~r~~il~~~a~~~~ 183 (219)
T PF00308_consen 159 LVVELQPPDDEDRRRILQKKAKERG 183 (219)
T ss_dssp EEEEE----HHHHHHHHHHHHHHTT
T ss_pred chhhcCCCCHHHHHHHHHHHHHHhC
Confidence 6899999999999999999885543
No 138
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=96.70 E-value=0.035 Score=50.78 Aligned_cols=108 Identities=15% Similarity=0.223 Sum_probs=80.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCChhHHHHHHHHHHHHhhhhHH
Q 002663 2 AEAAVNFALETLGPLLVEEIRLFGGVRKEVQSIKSELESLRSFLKDADTRAAVEELEGGGEESVRTWVKQLRDEAYRIED 81 (895)
Q Consensus 2 a~~~v~~~~~kl~~~l~~~~~~~~~~~~~~~~l~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~wl~~l~~~~~~~ed 81 (895)
++||++.+++.+...+.+..+....++.-+++|...+..|..++++.+.....-+ .+-+.=++++.+...++++
T Consensus 7 ~gaalG~~~~eLlk~v~~~~~k~~~fk~~l~~L~sTl~~i~P~i~eI~~~~~eld------~~~~ee~e~L~~~L~~g~~ 80 (147)
T PF05659_consen 7 GGAALGAVFGELLKAVIDASKKSLSFKSILKRLESTLESIIPIIKEIDKLNVELD------RPRQEEIERLKELLEKGKE 80 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHhhhcC------CchhHHHHHHHHHHHHHHH
Confidence 3567788888888888888888889999999999999999999999887644122 2336678899999999999
Q ss_pred HHHHHHHHHhcCCCCCCcchhhhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 002663 82 FIDEYALMVAKLPHESGLVGVLHRISRFIKKLRRRRGVATEIQDSESALADIK 134 (895)
Q Consensus 82 ~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~i~~~~~~l~~~~ 134 (895)
++++|..- ++ .|+...++++++|+++.+.+....
T Consensus 81 LV~k~sk~--------------~r-----~n~~kk~~y~~Ki~~le~~l~~f~ 114 (147)
T PF05659_consen 81 LVEKCSKV--------------RR-----WNLYKKPRYARKIEELEESLRRFI 114 (147)
T ss_pred HHHHhccc--------------cH-----HHHHhhHhHHHHHHHHHHHHHHHh
Confidence 99988421 11 233345566777777777776553
No 139
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=96.70 E-value=0.028 Score=63.08 Aligned_cols=153 Identities=14% Similarity=0.075 Sum_probs=84.6
Q ss_pred CCceeechhhHHHHHHHHhcCCCCceEEEEEcCCCchhhHHHHHHhccccc--cCC----------------CC-ceEEE
Q 002663 170 DDEVVGIESIKDKLIDLMVNGRSKSSVVAVVGEGGLGKTTLAGKLFNNEGL--KTH----------------FS-CRAWV 230 (895)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~--~~~----------------F~-~~~wv 230 (895)
-+++||-+...+.+...+..+. -.++..++|+.|+||||+|+.+.+..-- ... +. .++.+
T Consensus 13 fdeiiGqe~v~~~L~~~I~~gr-l~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~el 91 (535)
T PRK08451 13 FDELIGQESVSKTLSLALDNNR-LAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDIIEM 91 (535)
T ss_pred HHHccCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEEEe
Confidence 3678999999999999987653 3457789999999999999987763100 000 11 12233
Q ss_pred EeCCCCCHHHHHHHHHHHHHhccCCCCCCCCc---cCcCccc--cHHHHHHhcCCCCCCcEEEEEcCch-hhhhhhccCC
Q 002663 231 TVGKEYNKNDLLRTIIKEFHRLSKHGRDGPDR---HAEGPLE--GQKDVEHALLDNKKCSRIIVTTRHM-NVAKFCKSSS 304 (895)
Q Consensus 231 ~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~---~~~~~L~--~~~~l~~~l~~~~~gs~iivTTR~~-~v~~~~~~~~ 304 (895)
+.+....+.++. +++.+....... ..... +..+.+. ..+.+...+....+.+++|++|.+. .+......-
T Consensus 92 daas~~gId~IR-elie~~~~~P~~--~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~kL~~tI~SR- 167 (535)
T PRK08451 92 DAASNRGIDDIR-ELIEQTKYKPSM--ARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPATILSR- 167 (535)
T ss_pred ccccccCHHHHH-HHHHHHhhCccc--CCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhhCchHHHhh-
Confidence 332222343333 333332211000 00000 1111121 3445555555555567777766653 333222221
Q ss_pred CcceeeccCCChhhHHHHHHHhhc
Q 002663 305 SVRIHELETLPPDEAWKLFCRKAF 328 (895)
Q Consensus 305 ~~~~~~l~~L~~~es~~Lf~~~a~ 328 (895)
...+++.+++.++..+.+.+.+-
T Consensus 168 -c~~~~F~~Ls~~ei~~~L~~Il~ 190 (535)
T PRK08451 168 -TQHFRFKQIPQNSIISHLKTILE 190 (535)
T ss_pred -ceeEEcCCCCHHHHHHHHHHHHH
Confidence 26899999999998888776553
No 140
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=96.70 E-value=0.0046 Score=66.39 Aligned_cols=79 Identities=15% Similarity=0.224 Sum_probs=62.8
Q ss_pred CCceeechhhHHHHHHHHhcC--CCCceEEEEEcCCCchhhHHHHHHhccccccCCC--CceEEEEeCCCCCHHHHHHHH
Q 002663 170 DDEVVGIESIKDKLIDLMVNG--RSKSSVVAVVGEGGLGKTTLAGKLFNNEGLKTHF--SCRAWVTVGKEYNKNDLLRTI 245 (895)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F--~~~~wv~~~~~~~~~~l~~~i 245 (895)
++.+.+||++++++...|..- +....-+.|+|..|.|||+.++.|+.. +.... ..+++|++-...+..+++..|
T Consensus 16 P~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~--l~~~~~~~~~~yINc~~~~t~~~i~~~i 93 (366)
T COG1474 16 PEELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEE--LEESSANVEVVYINCLELRTPYQVLSKI 93 (366)
T ss_pred cccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHH--HHhhhccCceEEEeeeeCCCHHHHHHHH
Confidence 344999999999999988642 222334899999999999999999995 33332 127899999999999999999
Q ss_pred HHHHH
Q 002663 246 IKEFH 250 (895)
Q Consensus 246 ~~~l~ 250 (895)
+.+++
T Consensus 94 ~~~~~ 98 (366)
T COG1474 94 LNKLG 98 (366)
T ss_pred HHHcC
Confidence 99887
No 141
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.69 E-value=0.013 Score=70.43 Aligned_cols=46 Identities=28% Similarity=0.446 Sum_probs=39.0
Q ss_pred CCceeechhhHHHHHHHHhcCCCCceEEEEEcCCCchhhHHHHHHhcc
Q 002663 170 DDEVVGIESIKDKLIDLMVNGRSKSSVVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
-+.+|||+.++.++.+.|.... ..-+.++|.+|+||||+|+.++..
T Consensus 186 ld~~iGr~~ei~~~i~~l~r~~--~~n~lLvG~pGvGKTal~~~La~~ 231 (852)
T TIGR03345 186 IDPVLGRDDEIRQMIDILLRRR--QNNPILTGEAGVGKTAVVEGLALR 231 (852)
T ss_pred CCcccCCHHHHHHHHHHHhcCC--cCceeEECCCCCCHHHHHHHHHHH
Confidence 3578999999999999987654 335569999999999999999985
No 142
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=96.68 E-value=0.0086 Score=62.40 Aligned_cols=159 Identities=13% Similarity=0.092 Sum_probs=75.5
Q ss_pred CceeechhhHHHHHHHHhc----------C---CCCceEEEEEcCCCchhhHHHHHHhccccccCCCCceEEEEeCCCCC
Q 002663 171 DEVVGIESIKDKLIDLMVN----------G---RSKSSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYN 237 (895)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~----------~---~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~ 237 (895)
..++|.++.+++|.++... + .....-|.++|.+|.||||+|+.++.............|+.++..--
T Consensus 22 ~~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l 101 (284)
T TIGR02880 22 RELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDL 101 (284)
T ss_pred HhccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHH
Confidence 3578988888887665321 1 01123588999999999999987776311111111112443332100
Q ss_pred H-------HHHHHHHHHHHHhccCCCCCCCCc---cCcCc--cccHHHHHHhcCCCCCCcEEEEEcCchhhhhhhccC--
Q 002663 238 K-------NDLLRTIIKEFHRLSKHGRDGPDR---HAEGP--LEGQKDVEHALLDNKKCSRIIVTTRHMNVAKFCKSS-- 303 (895)
Q Consensus 238 ~-------~~l~~~i~~~l~~~~~~~~~~~~~---~~~~~--L~~~~~l~~~l~~~~~gs~iivTTR~~~v~~~~~~~-- 303 (895)
. ..-...++++.....--.++.... ..... -..++.+...+.....+-+||.+|.....-......
T Consensus 102 ~~~~~g~~~~~~~~~~~~a~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~ 181 (284)
T TIGR02880 102 VGQYIGHTAPKTKEILKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPG 181 (284)
T ss_pred hHhhcccchHHHHHHHHHccCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHH
Confidence 0 001112222211100000000000 00000 112334444554554556777776543332211110
Q ss_pred ---CCcceeeccCCChhhHHHHHHHhhcC
Q 002663 304 ---SSVRIHELETLPPDEAWKLFCRKAFG 329 (895)
Q Consensus 304 ---~~~~~~~l~~L~~~es~~Lf~~~a~~ 329 (895)
.....+++++++.+|-.+++...+-.
T Consensus 182 L~sR~~~~i~fp~l~~edl~~I~~~~l~~ 210 (284)
T TIGR02880 182 FSSRVAHHVDFPDYSEAELLVIAGLMLKE 210 (284)
T ss_pred HHhhCCcEEEeCCcCHHHHHHHHHHHHHH
Confidence 01257899999999999998887643
No 143
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=96.68 E-value=0.026 Score=62.89 Aligned_cols=152 Identities=16% Similarity=0.121 Sum_probs=83.3
Q ss_pred CCceeechhhHHHHHHHHhcCCCCceEEEEEcCCCchhhHHHHHHhccccc---------------------cCCCCceE
Q 002663 170 DDEVVGIESIKDKLIDLMVNGRSKSSVVAVVGEGGLGKTTLAGKLFNNEGL---------------------KTHFSCRA 228 (895)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~---------------------~~~F~~~~ 228 (895)
-+++||-+..++.+.+.+..+. -.+.+.++|+.|+||||+|+.+.+...- ..+++ .+
T Consensus 16 ~~diiGq~~~v~~L~~~i~~~~-i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d-~~ 93 (451)
T PRK06305 16 FSEILGQDAVVAVLKNALRFNR-AAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD-VL 93 (451)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc-eE
Confidence 3678999999999999997643 2357889999999999999988763110 01122 22
Q ss_pred EEEeCCCCCHHHHHHHHHHHHHhccCCCCCCCCc---cCcCcc--ccHHHHHHhcCCCCCCcEEEEEcC-chhhhhhhcc
Q 002663 229 WVTVGKEYNKNDLLRTIIKEFHRLSKHGRDGPDR---HAEGPL--EGQKDVEHALLDNKKCSRIIVTTR-HMNVAKFCKS 302 (895)
Q Consensus 229 wv~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~---~~~~~L--~~~~~l~~~l~~~~~gs~iivTTR-~~~v~~~~~~ 302 (895)
++.-.......+ .+.+.+.+...... ..... +..+.+ ...+.+...+........+|++|. ...+......
T Consensus 94 ~i~g~~~~gid~-ir~i~~~l~~~~~~--~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~~~~kl~~tI~s 170 (451)
T PRK06305 94 EIDGASHRGIED-IRQINETVLFTPSK--SRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIHKIPGTILS 170 (451)
T ss_pred EeeccccCCHHH-HHHHHHHHHhhhhc--CCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeCChHhcchHHHH
Confidence 222112222333 33344443322110 00000 001111 133445555555444566666653 3334332221
Q ss_pred CCCcceeeccCCChhhHHHHHHHhhc
Q 002663 303 SSSVRIHELETLPPDEAWKLFCRKAF 328 (895)
Q Consensus 303 ~~~~~~~~l~~L~~~es~~Lf~~~a~ 328 (895)
. ...++++++++++....+...+-
T Consensus 171 R--c~~v~f~~l~~~el~~~L~~~~~ 194 (451)
T PRK06305 171 R--CQKMHLKRIPEETIIDKLALIAK 194 (451)
T ss_pred h--ceEEeCCCCCHHHHHHHHHHHHH
Confidence 1 16899999999998887777653
No 144
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.68 E-value=0.0011 Score=59.37 Aligned_cols=22 Identities=41% Similarity=0.607 Sum_probs=20.6
Q ss_pred EEEEEcCCCchhhHHHHHHhcc
Q 002663 196 VVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 196 vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
+|+|.|++|+||||+|+.+.+.
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999984
No 145
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.67 E-value=0.00085 Score=61.18 Aligned_cols=58 Identities=21% Similarity=0.303 Sum_probs=43.1
Q ss_pred ceEEEEEcCCCchhhHHHHHHhccccccCC-----CCceEEEEeCCCCCHHHHHHHHHHHHHhcc
Q 002663 194 SSVVAVVGEGGLGKTTLAGKLFNNEGLKTH-----FSCRAWVTVGKEYNKNDLLRTIIKEFHRLS 253 (895)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~-----F~~~~wv~~~~~~~~~~l~~~i~~~l~~~~ 253 (895)
-+++.|+|.+|+|||++++.+.++ .... -..++|+.+....+...+...++.++....
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~ 66 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQ--LNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPL 66 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHH--HHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SS
T ss_pred CcccEEEcCCCCCHHHHHHHHHHH--hHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccc
Confidence 468999999999999999999985 2211 344669988877799999999999998663
No 146
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.66 E-value=0.022 Score=65.85 Aligned_cols=153 Identities=14% Similarity=0.156 Sum_probs=90.0
Q ss_pred CCceeechhhHHHHHHHHhcCCCCceEEEEEcCCCchhhHHHHHHhcccc---------------------ccCCCCceE
Q 002663 170 DDEVVGIESIKDKLIDLMVNGRSKSSVVAVVGEGGLGKTTLAGKLFNNEG---------------------LKTHFSCRA 228 (895)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~---------------------~~~~F~~~~ 228 (895)
-+++||-+..++.+...+..+. -.+.+.++|+.|+||||+|+.+..... ...+|+. .
T Consensus 16 f~~viGq~~~~~~L~~~i~~~~-l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~-~ 93 (614)
T PRK14971 16 FESVVGQEALTTTLKNAIATNK-LAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNI-H 93 (614)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCce-E
Confidence 3678999999999999997653 245688999999999999988776321 1123432 2
Q ss_pred EEEeCCCCCHHHHHHHHHHHHHhccCCCCCCCCc---cCcCcc--ccHHHHHHhcCCCCCCcEEEEEc-Cchhhhhhhcc
Q 002663 229 WVTVGKEYNKNDLLRTIIKEFHRLSKHGRDGPDR---HAEGPL--EGQKDVEHALLDNKKCSRIIVTT-RHMNVAKFCKS 302 (895)
Q Consensus 229 wv~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~---~~~~~L--~~~~~l~~~l~~~~~gs~iivTT-R~~~v~~~~~~ 302 (895)
.++......+.++ +.+++++...... ..... +..+.+ ..++.+...+..-...+.+|++| +...+......
T Consensus 94 ~ld~~~~~~vd~I-r~li~~~~~~P~~--~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt~~~kIl~tI~S 170 (614)
T PRK14971 94 ELDAASNNSVDDI-RNLIEQVRIPPQI--GKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHKILPTILS 170 (614)
T ss_pred EecccccCCHHHH-HHHHHHHhhCccc--CCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeCCchhchHHHHh
Confidence 3333333334333 3444444322111 00000 111122 24566666666655566665544 54555544332
Q ss_pred CCCcceeeccCCChhhHHHHHHHhhcC
Q 002663 303 SSSVRIHELETLPPDEAWKLFCRKAFG 329 (895)
Q Consensus 303 ~~~~~~~~l~~L~~~es~~Lf~~~a~~ 329 (895)
. ..++++++++.++....+.+.+-.
T Consensus 171 R--c~iv~f~~ls~~ei~~~L~~ia~~ 195 (614)
T PRK14971 171 R--CQIFDFNRIQVADIVNHLQYVASK 195 (614)
T ss_pred h--hheeecCCCCHHHHHHHHHHHHHH
Confidence 2 268999999999988888776543
No 147
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=96.60 E-value=0.027 Score=65.21 Aligned_cols=152 Identities=17% Similarity=0.162 Sum_probs=84.8
Q ss_pred CCceeechhhHHHHHHHHhcCCCCceEEEEEcCCCchhhHHHHHHhccccccCC---C-------------CceEEEEeC
Q 002663 170 DDEVVGIESIKDKLIDLMVNGRSKSSVVAVVGEGGLGKTTLAGKLFNNEGLKTH---F-------------SCRAWVTVG 233 (895)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~---F-------------~~~~wv~~~ 233 (895)
-.++||-+..++.+...+..+. -.+.+.++|+.|+||||+|+.++...--... + ..++++...
T Consensus 17 f~dIiGQe~~v~~L~~aI~~~r-l~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvieidaa 95 (725)
T PRK07133 17 FDDIVGQDHIVQTLKNIIKSNK-ISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDIIEMDAA 95 (725)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEEEEecc
Confidence 3678999999999999997653 3467789999999999999998763110000 0 011223222
Q ss_pred CCCCHHHHHHHHHHHHHhccCCCCCCCCc---cCcCcc--ccHHHHHHhcCCCCCCcEEE-EEcCchhhhhhhccCCCcc
Q 002663 234 KEYNKNDLLRTIIKEFHRLSKHGRDGPDR---HAEGPL--EGQKDVEHALLDNKKCSRII-VTTRHMNVAKFCKSSSSVR 307 (895)
Q Consensus 234 ~~~~~~~l~~~i~~~l~~~~~~~~~~~~~---~~~~~L--~~~~~l~~~l~~~~~gs~ii-vTTR~~~v~~~~~~~~~~~ 307 (895)
....+.+ .+.+.+.+...... ..... +..+.+ ..+..+...+........+| +||+...+......- ..
T Consensus 96 sn~~vd~-IReLie~~~~~P~~--g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~TI~SR--cq 170 (725)
T PRK07133 96 SNNGVDE-IRELIENVKNLPTQ--SKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLTILSR--VQ 170 (725)
T ss_pred ccCCHHH-HHHHHHHHHhchhc--CCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHHHHhh--ce
Confidence 2222333 34455544432111 00000 011112 14555555555544445544 455555554332221 26
Q ss_pred eeeccCCChhhHHHHHHHhh
Q 002663 308 IHELETLPPDEAWKLFCRKA 327 (895)
Q Consensus 308 ~~~l~~L~~~es~~Lf~~~a 327 (895)
.+++.+++.++-.+.+...+
T Consensus 171 ~ieF~~L~~eeI~~~L~~il 190 (725)
T PRK07133 171 RFNFRRISEDEIVSRLEFIL 190 (725)
T ss_pred eEEccCCCHHHHHHHHHHHH
Confidence 89999999999888887654
No 148
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.58 E-value=0.0018 Score=60.65 Aligned_cols=105 Identities=24% Similarity=0.142 Sum_probs=71.5
Q ss_pred CccEEEEeccCCCCCcccccCCCcceEEEEeccCCCcchhhhccCccccceeeccccCCCeEE-EecCCCcccceeeecc
Q 002663 717 HLRYLSLRGNMKKLPDWILKLKNLIGLRLILSGLTEDPISILQALPNLLELMLHGGYDYELFH-FEAGWFPKLRKLVLLN 795 (895)
Q Consensus 717 ~L~~L~l~~~~~~lp~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~-~~~~~~~~L~~L~l~~ 795 (895)
....++|++|.-..-..+..++.|..|.|.+|.++...+..-.-+|+|..|.|.+|++-+.-. .....+|+|++|.+-+
T Consensus 43 ~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~ 122 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLG 122 (233)
T ss_pred ccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecC
Confidence 567788887742222245578888999999988877666555567889999998887654221 2235788899998888
Q ss_pred CCCceee---EEccCcccccceEEEccCC
Q 002663 796 FEAVKLV---IIEKGAMPDIRELWSGPCP 821 (895)
Q Consensus 796 ~~~l~~l---~~~~~~~~~L~~L~l~~c~ 821 (895)
|+....- ...+..+|+|+.|+..+-.
T Consensus 123 Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 123 NPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred CchhcccCceeEEEEecCcceEeehhhhh
Confidence 8644331 1334568888888887643
No 149
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=96.57 E-value=0.029 Score=61.14 Aligned_cols=50 Identities=22% Similarity=0.267 Sum_probs=39.8
Q ss_pred CCCCceeechhhHHHHHHHHhcC-----------CCCceEEEEEcCCCchhhHHHHHHhcc
Q 002663 168 VEDDEVVGIESIKDKLIDLMVNG-----------RSKSSVVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 168 ~~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
+.-.++.|.+..++++.+.+... -...+-|.++|++|.|||++|+++++.
T Consensus 142 v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~ 202 (398)
T PTZ00454 142 VTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHH 202 (398)
T ss_pred CCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh
Confidence 34467899999999998876521 123567899999999999999999984
No 150
>PRK07261 topology modulation protein; Provisional
Probab=96.55 E-value=0.004 Score=59.50 Aligned_cols=50 Identities=28% Similarity=0.411 Sum_probs=30.6
Q ss_pred EEEEEcCCCchhhHHHHHHhcccccc-CCCCceEEEEeCCCCCHHHHHHHH
Q 002663 196 VVAVVGEGGLGKTTLAGKLFNNEGLK-THFSCRAWVTVGKEYNKNDLLRTI 245 (895)
Q Consensus 196 vv~I~G~gGiGKTtLA~~v~~~~~~~-~~F~~~~wv~~~~~~~~~~l~~~i 245 (895)
.|.|+|++|+||||||+++....... -+.|...|-..-...+..++...+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~ 52 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPNWQERDDDDMIADI 52 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEeccccccCCHHHHHHHH
Confidence 58999999999999999998642221 234555554322233334444443
No 151
>PRK06696 uridine kinase; Validated
Probab=96.54 E-value=0.0028 Score=63.74 Aligned_cols=42 Identities=24% Similarity=0.320 Sum_probs=34.8
Q ss_pred chhhHHHHHHHHhc-CCCCceEEEEEcCCCchhhHHHHHHhcc
Q 002663 176 IESIKDKLIDLMVN-GRSKSSVVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 176 r~~~~~~l~~~L~~-~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
|.+.+++|.+.+.. ..++..+|+|.|.+|+||||+|+++...
T Consensus 3 ~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~ 45 (223)
T PRK06696 3 RKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEE 45 (223)
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 56777888888764 3456789999999999999999999984
No 152
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.52 E-value=0.01 Score=70.75 Aligned_cols=45 Identities=29% Similarity=0.456 Sum_probs=38.5
Q ss_pred CceeechhhHHHHHHHHhcCCCCceEEEEEcCCCchhhHHHHHHhcc
Q 002663 171 DEVVGIESIKDKLIDLMVNGRSKSSVVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
+.+|||+.+++++.+.|.... ..-+.++|++|+|||++|+.+++.
T Consensus 182 ~~~igr~~ei~~~~~~L~~~~--~~n~lL~G~pG~GKT~l~~~la~~ 226 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRRK--KNNPLLVGEPGVGKTAIAEGLALR 226 (731)
T ss_pred CcccCcHHHHHHHHHHHhcCC--CCceEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999887653 334679999999999999999985
No 153
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=96.45 E-value=0.041 Score=53.70 Aligned_cols=139 Identities=14% Similarity=0.178 Sum_probs=74.0
Q ss_pred HHHHHHhcCCCCceEEEEEcCCCchhhHHHHHHhccccccC-------------------CCCceEEEEeC-CCCCHHHH
Q 002663 182 KLIDLMVNGRSKSSVVAVVGEGGLGKTTLAGKLFNNEGLKT-------------------HFSCRAWVTVG-KEYNKNDL 241 (895)
Q Consensus 182 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~-------------------~F~~~~wv~~~-~~~~~~~l 241 (895)
.+.+.+..+. -.+.+.++|+.|+||||+|+.+.....-.. .+....++... ..... +.
T Consensus 3 ~l~~~i~~~~-~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~~~~-~~ 80 (188)
T TIGR00678 3 QLKRALEKGR-LAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQSIKV-DQ 80 (188)
T ss_pred HHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccCcCCH-HH
Confidence 4455555432 236789999999999999988877421110 12122333222 22333 33
Q ss_pred HHHHHHHHHhccCCCCCCCCc---cCcCccc--cHHHHHHhcCCCCCCcEEEEEcCch-hhhhhhccCCCcceeeccCCC
Q 002663 242 LRTIIKEFHRLSKHGRDGPDR---HAEGPLE--GQKDVEHALLDNKKCSRIIVTTRHM-NVAKFCKSSSSVRIHELETLP 315 (895)
Q Consensus 242 ~~~i~~~l~~~~~~~~~~~~~---~~~~~L~--~~~~l~~~l~~~~~gs~iivTTR~~-~v~~~~~~~~~~~~~~l~~L~ 315 (895)
.+.+.+.+...... ..... +..+.+. .++.+...+....+.+.+|++|++. .+...... ...++++.+++
T Consensus 81 i~~i~~~~~~~~~~--~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~s--r~~~~~~~~~~ 156 (188)
T TIGR00678 81 VRELVEFLSRTPQE--SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRS--RCQVLPFPPLS 156 (188)
T ss_pred HHHHHHHHccCccc--CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHh--hcEEeeCCCCC
Confidence 33445544332111 00000 1111121 3455666666655566777777653 33333222 12689999999
Q ss_pred hhhHHHHHHHh
Q 002663 316 PDEAWKLFCRK 326 (895)
Q Consensus 316 ~~es~~Lf~~~ 326 (895)
.++..+.+.+.
T Consensus 157 ~~~~~~~l~~~ 167 (188)
T TIGR00678 157 EEALLQWLIRQ 167 (188)
T ss_pred HHHHHHHHHHc
Confidence 99988888776
No 154
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.43 E-value=0.00019 Score=82.35 Aligned_cols=213 Identities=24% Similarity=0.213 Sum_probs=104.2
Q ss_pred cCCCcEEEcCcc-cccc--cchhhhccccCCeEEeecc-cccccccccccccccccccccCcccceEEeeeecChHHHHH
Q 002663 585 LLSLEILVLART-FVSE--LPEEIRNLKKLRSLIVFHY-KYITGSIIPTEVAAKIHRGFGSLRGLLVLSTIEADSQVLKE 660 (895)
Q Consensus 585 l~~L~~L~L~~~-~l~~--lp~~i~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~ 660 (895)
+++|+.|.+.++ .+.. +-.....+++|+.|+++++ ..... ........
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~----------------------------~~~~~~~~ 238 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITL----------------------------SPLLLLLL 238 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCccccccc----------------------------chhHhhhh
Confidence 567777777776 5554 3344556777777777652 11000 00011123
Q ss_pred hhccccCcEEEEEecC-CCcchHHHHhhccCCCCEEEEEecCcccccccccCcCCCcCccEEEEeccCC----CCCcccc
Q 002663 661 LMMLRQLRMLSIRPQN-GNGRDLCALIANLENVETLGVLMTSKEEILDLQSLSSPPQHLRYLSLRGNMK----KLPDWIL 735 (895)
Q Consensus 661 l~~l~~L~~L~l~~~~-~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~----~lp~~~~ 735 (895)
...+++|+.|++.... .++..+......+++|+.|.+..|.......+..+...+++|++|+++++.. .+.....
T Consensus 239 ~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~ 318 (482)
T KOG1947|consen 239 LSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLK 318 (482)
T ss_pred hhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHH
Confidence 3455777777777643 4444454444457777777766665323233444444444566666665521 1222223
Q ss_pred cCCCcceEEEEeccCCCcchhhhccCccccceeeccccCC---CeEEEecCCCcccceeeeccCCCceeeEEccCccccc
Q 002663 736 KLKNLIGLRLILSGLTEDPISILQALPNLLELMLHGGYDY---ELFHFEAGWFPKLRKLVLLNFEAVKLVIIEKGAMPDI 812 (895)
Q Consensus 736 ~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~---~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L 812 (895)
++++|+.|.+..+. .++.++.+.+.++... .........+++|+.+.+..|. .....
T Consensus 319 ~c~~l~~l~~~~~~----------~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~-~~~~~--------- 378 (482)
T KOG1947|consen 319 NCPNLRELKLLSLN----------GCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG-ISDLG--------- 378 (482)
T ss_pred hCcchhhhhhhhcC----------CCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh-ccCcc---------
Confidence 34444444333221 1334444444333221 1111222345555555555543 22211
Q ss_pred ceEEEccCCCC-cccCccccccccCcEEEEEcCh
Q 002663 813 RELWSGPCPLL-MEIPIGIEHLRNLELFTFHDMS 845 (895)
Q Consensus 813 ~~L~l~~c~~l-~~lp~~~~~l~~L~~L~l~~c~ 845 (895)
..+.+.+|+.+ ..+.........|+.|+++.|.
T Consensus 379 ~~~~l~gc~~l~~~l~~~~~~~~~l~~L~l~~~~ 412 (482)
T KOG1947|consen 379 LELSLRGCPNLTESLELRLCRSDSLRVLNLSDCR 412 (482)
T ss_pred hHHHhcCCcccchHHHHHhccCCccceEecccCc
Confidence 14556667666 3333333344448999999997
No 155
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=96.40 E-value=0.013 Score=65.69 Aligned_cols=54 Identities=26% Similarity=0.570 Sum_probs=43.6
Q ss_pred CCCceeechhhHHHHHHHHhcC----CCCceEEEEEcCCCchhhHHHHHHhccccccCCC
Q 002663 169 EDDEVVGIESIKDKLIDLMVNG----RSKSSVVAVVGEGGLGKTTLAGKLFNNEGLKTHF 224 (895)
Q Consensus 169 ~~~~~vGr~~~~~~l~~~L~~~----~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F 224 (895)
-+.+-.|.++-+++|.++|.-. .-.-.++.+||++|||||.|++.++. .....|
T Consensus 321 Ld~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~--al~Rkf 378 (782)
T COG0466 321 LDKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAK--ALGRKF 378 (782)
T ss_pred hcccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHH--HhCCCE
Confidence 3456789999999999999743 22347999999999999999999998 355554
No 156
>PRK07667 uridine kinase; Provisional
Probab=96.37 E-value=0.0044 Score=60.66 Aligned_cols=38 Identities=26% Similarity=0.435 Sum_probs=31.6
Q ss_pred HHHHHHHHhcCCCCceEEEEEcCCCchhhHHHHHHhcc
Q 002663 180 KDKLIDLMVNGRSKSSVVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 180 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
.+.+.+.+........+|||.|.+|.||||+|+.+...
T Consensus 3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~ 40 (193)
T PRK07667 3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKEN 40 (193)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45667777666666789999999999999999999884
No 157
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.36 E-value=0.046 Score=63.33 Aligned_cols=154 Identities=16% Similarity=0.109 Sum_probs=86.0
Q ss_pred CCceeechhhHHHHHHHHhcCCCCceEEEEEcCCCchhhHHHHHHhcccccc---CCC-----------------CceEE
Q 002663 170 DDEVVGIESIKDKLIDLMVNGRSKSSVVAVVGEGGLGKTTLAGKLFNNEGLK---THF-----------------SCRAW 229 (895)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~---~~F-----------------~~~~w 229 (895)
-+++||-+..++.+..++..+. -.+.+.++|..|+||||+|+.+.+...-. ..+ ..++.
T Consensus 15 ~~eiiGq~~~~~~L~~~i~~~~-i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~i~~~~~~d~~~ 93 (585)
T PRK14950 15 FAELVGQEHVVQTLRNAIAEGR-VAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRAIAEGSAVDVIE 93 (585)
T ss_pred HHHhcCCHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHHHhcCCCCeEEE
Confidence 3679999999999999887653 24567899999999999999998642110 011 01223
Q ss_pred EEeCCCCCHHHHHHHHHHHHHhccCCCCCCCCc---cCcCcc--ccHHHHHHhcCCCCCCcEEEEEcCc-hhhhhhhccC
Q 002663 230 VTVGKEYNKNDLLRTIIKEFHRLSKHGRDGPDR---HAEGPL--EGQKDVEHALLDNKKCSRIIVTTRH-MNVAKFCKSS 303 (895)
Q Consensus 230 v~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~---~~~~~L--~~~~~l~~~l~~~~~gs~iivTTR~-~~v~~~~~~~ 303 (895)
++.+......+ .+.+.+.+...... ..... +..+.+ ...+.+...+......+.+|++|.+ ..+.......
T Consensus 94 i~~~~~~~vd~-ir~ii~~~~~~p~~--~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~tI~SR 170 (585)
T PRK14950 94 MDAASHTSVDD-AREIIERVQFRPAL--ARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPATILSR 170 (585)
T ss_pred EeccccCCHHH-HHHHHHHHhhCccc--CCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhHHHHhc
Confidence 33222333333 34454444322111 00000 011112 1344555555555555666665543 3443332221
Q ss_pred CCcceeeccCCChhhHHHHHHHhhcC
Q 002663 304 SSVRIHELETLPPDEAWKLFCRKAFG 329 (895)
Q Consensus 304 ~~~~~~~l~~L~~~es~~Lf~~~a~~ 329 (895)
...++++.++.++....+.+.+..
T Consensus 171 --~~~i~f~~l~~~el~~~L~~~a~~ 194 (585)
T PRK14950 171 --CQRFDFHRHSVADMAAHLRKIAAA 194 (585)
T ss_pred --cceeeCCCCCHHHHHHHHHHHHHH
Confidence 157889999999888888777644
No 158
>COG3903 Predicted ATPase [General function prediction only]
Probab=96.32 E-value=0.003 Score=66.27 Aligned_cols=263 Identities=17% Similarity=0.118 Sum_probs=143.4
Q ss_pred CceEEEEEcCCCchhhHHHHHHhccccccCCCCc-eEEEEeCCCCCHHHHHHHHHHHHHhccCCCCCCCCc--------c
Q 002663 193 KSSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSC-RAWVTVGKEYNKNDLLRTIIKEFHRLSKHGRDGPDR--------H 263 (895)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~-~~wv~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~--------~ 263 (895)
..+.|.++|.|||||||++-.+.. +...|.. +.++......+...+.......+......++..-+. .
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~---~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~g~~~~~~~~~~~~~rr 89 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH---AASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQPGDSAVDTLVRRIGDRR 89 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh---HhhhcccceeeeeccccCchhHhHHHHHhhcccccccchHHHHHHHHHHhhhh
Confidence 368999999999999999998887 6777844 556666666666666555555555442221111000 0
Q ss_pred CcCccccHH-------HHHHhcCCCCCCcEEEEEcCchhhhhhhccCCCcceeeccCCChh-hHHHHHHHhhcCCCCC--
Q 002663 264 AEGPLEGQK-------DVEHALLDNKKCSRIIVTTRHMNVAKFCKSSSSVRIHELETLPPD-EAWKLFCRKAFGPSSG-- 333 (895)
Q Consensus 264 ~~~~L~~~~-------~l~~~l~~~~~gs~iivTTR~~~v~~~~~~~~~~~~~~l~~L~~~-es~~Lf~~~a~~~~~~-- 333 (895)
....++.-. .+...+..+.+.-.|+.|+|....... ...+.++.|+.. ++.++|...|.....+
T Consensus 90 ~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l~~g------e~~~~~~~L~~~d~a~~lf~~ra~~~~~~f~ 163 (414)
T COG3903 90 ALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAILVAG------EVHRRVPSLSLFDEAIELFVCRAVLVALSFW 163 (414)
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhcccc------cccccCCccccCCchhHHHHHHHHHhcccee
Confidence 001122222 222234455556678999998544332 257788888876 7899998876332211
Q ss_pred --CCCchhHHHH---------HHHHHHhhhccCCCC------HHHHHhhhhc----CCChHHHHHHHhcccCCCChhhhh
Q 002663 334 --GCCPSELKEF---------FIVALGGLLSTKNRI------VSEWKKLFDS----DPHLKDCNRVLSEGYYDLPHHLKS 392 (895)
Q Consensus 334 --~~~~~~l~~~---------ai~~~g~~l~~~~~~------~~~w~~~~~~----~~~~~~i~~~l~~sy~~L~~~~k~ 392 (895)
........++ +|...+...+.-... -+.|..+-.. ........+.+.+||.-|...++-
T Consensus 164 l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgwe~~ 243 (414)
T COG3903 164 LTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGWERA 243 (414)
T ss_pred ecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhHHHH
Confidence 0111112221 333333332221110 0122222211 233455678899999999999999
Q ss_pred HhcccccCCCCcccchhhHHHHHHHcCcccccCCCCHHHHHHHHHHHHhhCCceeeeecCCCCceeEEEecHHHHHHHHH
Q 002663 393 CLLYFGLFPESCKINRGRLIRLWIAEGFVQYRKRLTSEQVAAEYLDELIDRSLVQVSNREIPGRAIICQVHDLMHEIIIR 472 (895)
Q Consensus 393 ~fl~~a~fp~~~~i~~~~li~~w~a~g~~~~~~~~~~~~~~~~~l~~L~~~sll~~~~~~~~~~~~~~~mhdli~~~~~~ 472 (895)
.|--++.|...+... ...|.+.|-... ...-.....+..+++++++...+... ...++.-+-.+.|+..
T Consensus 244 ~~~rLa~~~g~f~~~----l~~~~a~g~~~~----~~~y~~~~a~~ll~~kslv~a~~~~~---~a~~Rl~eT~r~Yala 312 (414)
T COG3903 244 LFGRLAVFVGGFDLG----LALAVAAGADVD----VPRYLVLLALTLLVDKSLVVALDLLG---RARYRLLETGRRYALA 312 (414)
T ss_pred Hhcchhhhhhhhccc----HHHHHhcCCccc----cchHHHHHHHHHHhhccchhhhhhhh---HHHHHHHHHHHHHHHH
Confidence 999999997664443 233444332210 01112444567888999887654321 1124444555556554
Q ss_pred Hhh
Q 002663 473 KTE 475 (895)
Q Consensus 473 ~~~ 475 (895)
+..
T Consensus 313 eL~ 315 (414)
T COG3903 313 ELH 315 (414)
T ss_pred HHH
Confidence 443
No 159
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.32 E-value=0.07 Score=59.93 Aligned_cols=153 Identities=17% Similarity=0.099 Sum_probs=84.9
Q ss_pred CCceeechhhHHHHHHHHhcCCCCceEEEEEcCCCchhhHHHHHHhcccc-----c--------------cCCCCceEEE
Q 002663 170 DDEVVGIESIKDKLIDLMVNGRSKSSVVAVVGEGGLGKTTLAGKLFNNEG-----L--------------KTHFSCRAWV 230 (895)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~-----~--------------~~~F~~~~wv 230 (895)
-.+++|-+...+.+.+.+..+. -.+.+.++|+.|+||||+|+.++.... . ...|...+++
T Consensus 15 f~diiGq~~i~~~L~~~i~~~~-i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~ei 93 (486)
T PRK14953 15 FKEVIGQEIVVRILKNAVKLQR-VSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIEI 93 (486)
T ss_pred HHHccChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEEE
Confidence 3578999999999999997653 345678899999999999998876311 0 0112233444
Q ss_pred EeCCCCCHHHHHHHHHHHHHhccCCCCCCCCc---cCcCcc--ccHHHHHHhcCCCCCCcEEEEEc-CchhhhhhhccCC
Q 002663 231 TVGKEYNKNDLLRTIIKEFHRLSKHGRDGPDR---HAEGPL--EGQKDVEHALLDNKKCSRIIVTT-RHMNVAKFCKSSS 304 (895)
Q Consensus 231 ~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~---~~~~~L--~~~~~l~~~l~~~~~gs~iivTT-R~~~v~~~~~~~~ 304 (895)
+.+....+.+ .+.+.+.+...... ..... +..+.+ ...+.+...+....+...+|++| +...+.......
T Consensus 94 daas~~gvd~-ir~I~~~~~~~P~~--~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt~~~kl~~tI~SR- 169 (486)
T PRK14953 94 DAASNRGIDD-IRALRDAVSYTPIK--GKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYDKIPPTILSR- 169 (486)
T ss_pred eCccCCCHHH-HHHHHHHHHhCccc--CCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEECCHHHHHHHHHHh-
Confidence 4433333332 23444443322111 00000 111112 13445555555544455555544 443443322211
Q ss_pred CcceeeccCCChhhHHHHHHHhhc
Q 002663 305 SVRIHELETLPPDEAWKLFCRKAF 328 (895)
Q Consensus 305 ~~~~~~l~~L~~~es~~Lf~~~a~ 328 (895)
...+++.+++.++-...+...+-
T Consensus 170 -c~~i~f~~ls~~el~~~L~~i~k 192 (486)
T PRK14953 170 -CQRFIFSKPTKEQIKEYLKRICN 192 (486)
T ss_pred -ceEEEcCCCCHHHHHHHHHHHHH
Confidence 15789999999998887777653
No 160
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.31 E-value=0.046 Score=62.99 Aligned_cols=152 Identities=16% Similarity=0.134 Sum_probs=83.5
Q ss_pred CCceeechhhHHHHHHHHhcCCCCceEEEEEcCCCchhhHHHHHHhccccccCC-------------------CCceEEE
Q 002663 170 DDEVVGIESIKDKLIDLMVNGRSKSSVVAVVGEGGLGKTTLAGKLFNNEGLKTH-------------------FSCRAWV 230 (895)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~-------------------F~~~~wv 230 (895)
-+++||-+...+.+.+.+..+. -.+.+.++|+.|+||||+|+.+.+..--... +..++.+
T Consensus 15 f~~iiGq~~v~~~L~~~i~~~~-~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~d~~ei 93 (576)
T PRK14965 15 FSDLTGQEHVSRTLQNAIDTGR-VAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSVDVFEI 93 (576)
T ss_pred HHHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCCCeeee
Confidence 3689999999999999987653 2356789999999999999988774110010 1112222
Q ss_pred EeCCCCCHHHHHHHHHHHHHhccCCCCCCCCc---cCcCccc--cHHHHHHhcCCCCCCcEEEE-EcCchhhhhhhccCC
Q 002663 231 TVGKEYNKNDLLRTIIKEFHRLSKHGRDGPDR---HAEGPLE--GQKDVEHALLDNKKCSRIIV-TTRHMNVAKFCKSSS 304 (895)
Q Consensus 231 ~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~---~~~~~L~--~~~~l~~~l~~~~~gs~iiv-TTR~~~v~~~~~~~~ 304 (895)
+......+.+ .+++.+.+...... ..... +..+.|. ..+.+...+..-.....+|+ ||....+......-
T Consensus 94 d~~s~~~v~~-ir~l~~~~~~~p~~--~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~tI~SR- 169 (576)
T PRK14965 94 DGASNTGVDD-IRELRENVKYLPSR--SRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITILSR- 169 (576)
T ss_pred eccCccCHHH-HHHHHHHHHhcccc--CCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhHHHHHh-
Confidence 2222233333 34454444322111 00000 0111121 34455555555444556655 55545555433221
Q ss_pred CcceeeccCCChhhHHHHHHHhh
Q 002663 305 SVRIHELETLPPDEAWKLFCRKA 327 (895)
Q Consensus 305 ~~~~~~l~~L~~~es~~Lf~~~a 327 (895)
...++++.++.++....+...+
T Consensus 170 -c~~~~f~~l~~~~i~~~L~~i~ 191 (576)
T PRK14965 170 -CQRFDFRRIPLQKIVDRLRYIA 191 (576)
T ss_pred -hhhhhcCCCCHHHHHHHHHHHH
Confidence 1578899999988877776544
No 161
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.26 E-value=0.065 Score=62.03 Aligned_cols=154 Identities=16% Similarity=0.108 Sum_probs=84.6
Q ss_pred CCceeechhhHHHHHHHHhcCCCCceEEEEEcCCCchhhHHHHHHhccccccCCC---------------------CceE
Q 002663 170 DDEVVGIESIKDKLIDLMVNGRSKSSVVAVVGEGGLGKTTLAGKLFNNEGLKTHF---------------------SCRA 228 (895)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F---------------------~~~~ 228 (895)
-.+++|.+...+.+..++..+. -.+.+.++|..|+||||+|+.++...--.... ..++
T Consensus 15 f~~liGq~~i~~~L~~~l~~~r-l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~~i~~g~h~D~~ 93 (620)
T PRK14948 15 FDELVGQEAIATTLKNALISNR-IAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCRAIAAGNALDVI 93 (620)
T ss_pred HhhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHHHHhcCCCccEE
Confidence 3678999999999999998653 23577899999999999999998752111000 0122
Q ss_pred EEEeCCCCCHHHHHHHHHHHHHhccCCCCCCCCc---cCcCccc--cHHHHHHhcCCCCCCcEEEEEcC-chhhhhhhcc
Q 002663 229 WVTVGKEYNKNDLLRTIIKEFHRLSKHGRDGPDR---HAEGPLE--GQKDVEHALLDNKKCSRIIVTTR-HMNVAKFCKS 302 (895)
Q Consensus 229 wv~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~---~~~~~L~--~~~~l~~~l~~~~~gs~iivTTR-~~~v~~~~~~ 302 (895)
.+.......+ +-.+++.+.+...... ..... +..+.|. .++.+...+..-.....+|++|. ...+......
T Consensus 94 ei~~~~~~~v-d~IReii~~a~~~p~~--~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpTIrS 170 (620)
T PRK14948 94 EIDAASNTGV-DNIRELIERAQFAPVQ--ARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTIIS 170 (620)
T ss_pred EEeccccCCH-HHHHHHHHHHhhChhc--CCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHHHHh
Confidence 2332222233 3334454444322111 00000 1111221 45556556655444455555444 3344433222
Q ss_pred CCCcceeeccCCChhhHHHHHHHhhcC
Q 002663 303 SSSVRIHELETLPPDEAWKLFCRKAFG 329 (895)
Q Consensus 303 ~~~~~~~~l~~L~~~es~~Lf~~~a~~ 329 (895)
- ...+++..++.++....+.+.+..
T Consensus 171 R--c~~~~f~~l~~~ei~~~L~~ia~k 195 (620)
T PRK14948 171 R--CQRFDFRRIPLEAMVQHLSEIAEK 195 (620)
T ss_pred h--eeEEEecCCCHHHHHHHHHHHHHH
Confidence 1 157888899998888777766543
No 162
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=96.25 E-value=0.052 Score=53.94 Aligned_cols=53 Identities=26% Similarity=0.295 Sum_probs=41.1
Q ss_pred CCceeechhhHHHHHHHHhcC-----------CCCceEEEEEcCCCchhhHHHHHHhccccccCCC
Q 002663 170 DDEVVGIESIKDKLIDLMVNG-----------RSKSSVVAVVGEGGLGKTTLAGKLFNNEGLKTHF 224 (895)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F 224 (895)
-.++-|.|..+++|.+-.... -...+=|.+||.+|.|||-||++|+|. .+..|
T Consensus 184 y~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANq--TSATF 247 (440)
T KOG0726|consen 184 YADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQ--TSATF 247 (440)
T ss_pred hcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcc--cchhh
Confidence 356788999999999887532 113456789999999999999999994 55555
No 163
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=96.24 E-value=0.081 Score=60.49 Aligned_cols=153 Identities=11% Similarity=0.095 Sum_probs=86.9
Q ss_pred CCceeechhhHHHHHHHHhcCCCCceEEEEEcCCCchhhHHHHHHhcccccc--------------------CCCCceEE
Q 002663 170 DDEVVGIESIKDKLIDLMVNGRSKSSVVAVVGEGGLGKTTLAGKLFNNEGLK--------------------THFSCRAW 229 (895)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~--------------------~~F~~~~w 229 (895)
-.++||-+..++.+...+..+. -.+.+.++|+.|+||||+|+.+++..--. .+++ .++
T Consensus 15 f~diiGqe~iv~~L~~~i~~~~-i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~~~~~d-v~~ 92 (563)
T PRK06647 15 FNSLEGQDFVVETLKHSIESNK-IANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDNDNSLD-VIE 92 (563)
T ss_pred HHHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHcCCCCC-eEE
Confidence 3678999999999999997653 34578899999999999999998742111 1222 223
Q ss_pred EEeCCCCCHHHHHHHHHHHHHhccCCCCCCCCc---cCcCccc--cHHHHHHhcCCCCCCcEEEEEcCc-hhhhhhhccC
Q 002663 230 VTVGKEYNKNDLLRTIIKEFHRLSKHGRDGPDR---HAEGPLE--GQKDVEHALLDNKKCSRIIVTTRH-MNVAKFCKSS 303 (895)
Q Consensus 230 v~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~---~~~~~L~--~~~~l~~~l~~~~~gs~iivTTR~-~~v~~~~~~~ 303 (895)
+.......+.++. ++.+.+...... ..... +..+.+. .++.+...+....+...+|.+|.+ ..+......-
T Consensus 93 idgas~~~vddIr-~l~e~~~~~p~~--~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~tI~SR 169 (563)
T PRK06647 93 IDGASNTSVQDVR-QIKEEIMFPPAS--SRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPATIKSR 169 (563)
T ss_pred ecCcccCCHHHHH-HHHHHHHhchhc--CCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHHHHHHh
Confidence 3322223343433 344333221111 00000 1111121 455566666555556666665543 3443332221
Q ss_pred CCcceeeccCCChhhHHHHHHHhhcC
Q 002663 304 SSVRIHELETLPPDEAWKLFCRKAFG 329 (895)
Q Consensus 304 ~~~~~~~l~~L~~~es~~Lf~~~a~~ 329 (895)
...++.++++.++-.+.+...+..
T Consensus 170 --c~~~~f~~l~~~el~~~L~~i~~~ 193 (563)
T PRK06647 170 --CQHFNFRLLSLEKIYNMLKKVCLE 193 (563)
T ss_pred --ceEEEecCCCHHHHHHHHHHHHHH
Confidence 157899999999988888776543
No 164
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.23 E-value=0.0046 Score=68.42 Aligned_cols=45 Identities=24% Similarity=0.428 Sum_probs=39.2
Q ss_pred ceeechhhHHHHHHHHhc----CCCCceEEEEEcCCCchhhHHHHHHhc
Q 002663 172 EVVGIESIKDKLIDLMVN----GRSKSSVVAVVGEGGLGKTTLAGKLFN 216 (895)
Q Consensus 172 ~~vGr~~~~~~l~~~L~~----~~~~~~vv~I~G~gGiGKTtLA~~v~~ 216 (895)
+++|.++.++++++.|.. ....-+++.++|++|+||||||+.+..
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~ 125 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKS 125 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHH
Confidence 689999999999999932 234567999999999999999999998
No 165
>PF12061 DUF3542: Protein of unknown function (DUF3542); InterPro: IPR021929 R1 is a gene for resistance to late blight, the most destructive disease in potato cultivation worldwide. The R1 gene belongs to the class of plant genes for pathogen resistance that have a leucine zipper motif, a putative nucleotide binding domain and a leucine-rich repeat domain []. Most proteins matching this entry are found associated with PF00931 from PFAM.
Probab=96.17 E-value=0.018 Score=57.48 Aligned_cols=76 Identities=25% Similarity=0.363 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhh-hhhhhccCCChhHHHHHHHHHHHHhhhhHHHH
Q 002663 5 AVNFALETLGPLLVEEIRLFGGVRKEVQSIKSELESLRSFLKDADTR-AAVEELEGGGEESVRTWVKQLRDEAYRIEDFI 83 (895)
Q Consensus 5 ~v~~~~~kl~~~l~~~~~~~~~~~~~~~~l~~~l~~i~~~l~~~~~~-~~~~~~~~~~~~~~~~wl~~l~~~~~~~ed~l 83 (895)
-|.++++++-+........+.-++.+++.++.+++.+|.||+..... +. .- ...+.+..++.+.||++|.++
T Consensus 297 yVdFlL~NLkdfq~rysdSlaflKnQiqvIQ~elesLqpFLk~V~ee~~n-kh------~~~ed~a~~ii~kAyevEYVV 369 (402)
T PF12061_consen 297 YVDFLLKNLKDFQGRYSDSLAFLKNQIQVIQTELESLQPFLKHVVEEPHN-KH------DTNEDCATQIIRKAYEVEYVV 369 (402)
T ss_pred HHHHHHhhHHHHhccccchHHHHHHHHHHHHHHHHHhhHHHHHHHhccch-hh------hhhhhHHHHHHHHHhheeeee
Confidence 46677777777776666777888999999999999999999997544 33 22 348899999999999999999
Q ss_pred HHHH
Q 002663 84 DEYA 87 (895)
Q Consensus 84 d~~~ 87 (895)
|.+.
T Consensus 370 DaCi 373 (402)
T PF12061_consen 370 DACI 373 (402)
T ss_pred ehhh
Confidence 9884
No 166
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.17 E-value=0.033 Score=65.71 Aligned_cols=45 Identities=31% Similarity=0.479 Sum_probs=38.0
Q ss_pred CceeechhhHHHHHHHHhcCCCCceEEEEEcCCCchhhHHHHHHhcc
Q 002663 171 DEVVGIESIKDKLIDLMVNGRSKSSVVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
+.++||+++++++.+.|.... -.-+.++|.+|+|||++|+.++..
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~--~~n~LLvGppGvGKT~lae~la~~ 230 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRR--KNNPLLVGESGVGKTAIAEGLAWR 230 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccC--CCCeEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999998743 234468999999999999999874
No 167
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=96.13 E-value=0.091 Score=56.69 Aligned_cols=153 Identities=16% Similarity=0.174 Sum_probs=85.8
Q ss_pred CCCceeechhhHHHHHHHHhcCCCCceEEEEEcCCCchhhHHHHHHhccccccC--------------------------
Q 002663 169 EDDEVVGIESIKDKLIDLMVNGRSKSSVVAVVGEGGLGKTTLAGKLFNNEGLKT-------------------------- 222 (895)
Q Consensus 169 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~-------------------------- 222 (895)
...++||-++..+.+.+.+..+. -.+.+.++|+.|+||+|+|..+....--..
T Consensus 17 ~~~~iiGq~~~~~~L~~~~~~~r-l~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~~i 95 (365)
T PRK07471 17 ETTALFGHAAAEAALLDAYRSGR-LHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVARRI 95 (365)
T ss_pred chhhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHHHHH
Confidence 34679999999999999988753 245789999999999999977766310000
Q ss_pred ---CCCceEEEEeC--CC-------CCHHHHHHHHHHHHHhccCCCCCCCCccCcCcc-----ccHHHHHHhcCCCCCCc
Q 002663 223 ---HFSCRAWVTVG--KE-------YNKNDLLRTIIKEFHRLSKHGRDGPDRHAEGPL-----EGQKDVEHALLDNKKCS 285 (895)
Q Consensus 223 ---~F~~~~wv~~~--~~-------~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~L-----~~~~~l~~~l~~~~~gs 285 (895)
......||.-. .. ..+.+ .+.+.+.+...... ........+.. .....+...+..-..++
T Consensus 96 ~~~~HPDl~~i~~~~~~~~~~~~~~I~Vdq-iR~l~~~~~~~~~~--~~~kVviIDead~m~~~aanaLLK~LEepp~~~ 172 (365)
T PRK07471 96 AAGAHGGLLTLERSWNEKGKRLRTVITVDE-VRELISFFGLTAAE--GGWRVVIVDTADEMNANAANALLKVLEEPPARS 172 (365)
T ss_pred HccCCCCeEEEecccccccccccccccHHH-HHHHHHHhCcCccc--CCCEEEEEechHhcCHHHHHHHHHHHhcCCCCe
Confidence 01112233210 10 11222 34444444332111 11110011111 13344444555544566
Q ss_pred EEEEEcCch-hhhhhhccCCCcceeeccCCChhhHHHHHHHhh
Q 002663 286 RIIVTTRHM-NVAKFCKSSSSVRIHELETLPPDEAWKLFCRKA 327 (895)
Q Consensus 286 ~iivTTR~~-~v~~~~~~~~~~~~~~l~~L~~~es~~Lf~~~a 327 (895)
.+|++|.+. .+...... ....+.+.+++.++..+.+....
T Consensus 173 ~~IL~t~~~~~llpti~S--Rc~~i~l~~l~~~~i~~~L~~~~ 213 (365)
T PRK07471 173 LFLLVSHAPARLLPTIRS--RCRKLRLRPLAPEDVIDALAAAG 213 (365)
T ss_pred EEEEEECCchhchHHhhc--cceEEECCCCCHHHHHHHHHHhc
Confidence 677777665 34333222 22689999999999999998764
No 168
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=96.06 E-value=0.0051 Score=60.98 Aligned_cols=48 Identities=35% Similarity=0.452 Sum_probs=40.3
Q ss_pred CCceeechhhHHHHHHHHhcC---CCCceEEEEEcCCCchhhHHHHHHhcc
Q 002663 170 DDEVVGIESIKDKLIDLMVNG---RSKSSVVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~~---~~~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
-.+|||-++.++++.=++... ++..--|.++|++|.||||||.-+++.
T Consensus 25 l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~E 75 (332)
T COG2255 25 LDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANE 75 (332)
T ss_pred HHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHH
Confidence 468999999999988887643 344568899999999999999999994
No 169
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=96.06 E-value=0.076 Score=63.93 Aligned_cols=48 Identities=23% Similarity=0.587 Sum_probs=38.7
Q ss_pred CCceeechhhHHHHHHHHhcC----CCCceEEEEEcCCCchhhHHHHHHhcc
Q 002663 170 DDEVVGIESIKDKLIDLMVNG----RSKSSVVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~~----~~~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
+.+++|.+..++++.+++... .....++.++|++|+|||++|+.+.+.
T Consensus 319 ~~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~ 370 (775)
T TIGR00763 319 DEDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKA 370 (775)
T ss_pred hhhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 356899999999999876522 223458999999999999999999984
No 170
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=96.03 E-value=0.033 Score=61.80 Aligned_cols=150 Identities=13% Similarity=0.082 Sum_probs=73.7
Q ss_pred CCceeechhhHH--HHHHHHhcC----CCCceEEEEEcCCCchhhHHHHHHhccccccCCCCceEEEEeCCCCCHHHHHH
Q 002663 170 DDEVVGIESIKD--KLIDLMVNG----RSKSSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLR 243 (895)
Q Consensus 170 ~~~~vGr~~~~~--~l~~~L~~~----~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~l~~ 243 (895)
++.++|-..... .+.++.... +....-+.|||+.|+|||+||+++++. +......+++++. .++..
T Consensus 111 dnFv~g~~N~~a~~~a~~~a~~~~~~~~~~~npl~L~G~~G~GKTHLl~Ai~~~--l~~~~~~v~yi~~------~~f~~ 182 (445)
T PRK12422 111 ANFLVTPENDLPHRILQEFTKVSEQGKGFPFNPIYLFGPEGSGKTHLMQAAVHA--LRESGGKILYVRS------ELFTE 182 (445)
T ss_pred cceeeCCcHHHHHHHHHHHHhccccccCCCCceEEEEcCCCCCHHHHHHHHHHH--HHHcCCCEEEeeH------HHHHH
Confidence 344568655542 333333211 112356889999999999999999985 3322333456543 22333
Q ss_pred HHHHHHHhcc----CCCCCCCCc---cCcCcccc--H--HHHHHhcCC-CCCCcEEEEEcCch---------hhhhhhcc
Q 002663 244 TIIKEFHRLS----KHGRDGPDR---HAEGPLEG--Q--KDVEHALLD-NKKCSRIIVTTRHM---------NVAKFCKS 302 (895)
Q Consensus 244 ~i~~~l~~~~----~~~~~~~~~---~~~~~L~~--~--~~l~~~l~~-~~~gs~iivTTR~~---------~v~~~~~~ 302 (895)
.+...+.... .......+. +..+.+.. | +.+...+.. ...|..||+||... .+...+..
T Consensus 183 ~~~~~l~~~~~~~f~~~~~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~ 262 (445)
T PRK12422 183 HLVSAIRSGEMQRFRQFYRNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEW 262 (445)
T ss_pred HHHHHHhcchHHHHHHHcccCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcC
Confidence 3333222100 000000000 00111111 1 111111110 01245688888542 22222222
Q ss_pred CCCcceeeccCCChhhHHHHHHHhhcCC
Q 002663 303 SSSVRIHELETLPPDEAWKLFCRKAFGP 330 (895)
Q Consensus 303 ~~~~~~~~l~~L~~~es~~Lf~~~a~~~ 330 (895)
..++++++++.++-.+++.+++-..
T Consensus 263 ---Gl~~~l~~pd~e~r~~iL~~k~~~~ 287 (445)
T PRK12422 263 ---GIAIPLHPLTKEGLRSFLERKAEAL 287 (445)
T ss_pred ---CeEEecCCCCHHHHHHHHHHHHHHc
Confidence 2688999999999999999887443
No 171
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=95.99 E-value=0.098 Score=60.05 Aligned_cols=152 Identities=14% Similarity=0.108 Sum_probs=84.3
Q ss_pred CCceeechhhHHHHHHHHhcCCCCceEEEEEcCCCchhhHHHHHHhcccccc--------------------CCCCceEE
Q 002663 170 DDEVVGIESIKDKLIDLMVNGRSKSSVVAVVGEGGLGKTTLAGKLFNNEGLK--------------------THFSCRAW 229 (895)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~--------------------~~F~~~~w 229 (895)
-+++||.+...+.+.+.+..+. -.+.+.++|+.|+||||+|+.+....--. .++| ++.
T Consensus 15 f~~viGq~~v~~~L~~~i~~~~-~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i~~g~~~d-v~e 92 (559)
T PRK05563 15 FEDVVGQEHITKTLKNAIKQGK-ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAITNGSLMD-VIE 92 (559)
T ss_pred HHhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCCCCC-eEE
Confidence 4689999999999999998653 34677889999999999999887631100 1122 233
Q ss_pred EEeCCCCCHHHHHHHHHHHHHhccCCCCCCCCc---cCcCcc--ccHHHHHHhcCCCCCCcEEEE-EcCchhhhhhhccC
Q 002663 230 VTVGKEYNKNDLLRTIIKEFHRLSKHGRDGPDR---HAEGPL--EGQKDVEHALLDNKKCSRIIV-TTRHMNVAKFCKSS 303 (895)
Q Consensus 230 v~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~---~~~~~L--~~~~~l~~~l~~~~~gs~iiv-TTR~~~v~~~~~~~ 303 (895)
++.+....+. -.+.+...+...... ..... +..+.| ..+..+...+........+|+ ||....+......-
T Consensus 93 idaas~~~vd-~ir~i~~~v~~~p~~--~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~tI~SR 169 (559)
T PRK05563 93 IDAASNNGVD-EIRDIRDKVKYAPSE--AKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPATILSR 169 (559)
T ss_pred eeccccCCHH-HHHHHHHHHhhCccc--CCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcHHHHhH
Confidence 4333222332 233344433321110 00000 111122 144555555554444445454 44444444332211
Q ss_pred CCcceeeccCCChhhHHHHHHHhhc
Q 002663 304 SSVRIHELETLPPDEAWKLFCRKAF 328 (895)
Q Consensus 304 ~~~~~~~l~~L~~~es~~Lf~~~a~ 328 (895)
...++..+++.++..+.+.+.+-
T Consensus 170 --c~~~~f~~~~~~ei~~~L~~i~~ 192 (559)
T PRK05563 170 --CQRFDFKRISVEDIVERLKYILD 192 (559)
T ss_pred --heEEecCCCCHHHHHHHHHHHHH
Confidence 15788999999998888877654
No 172
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=95.99 E-value=0.024 Score=63.20 Aligned_cols=151 Identities=11% Similarity=0.045 Sum_probs=74.5
Q ss_pred CCceeechhh--HHHHHHHHhcCCCCceEEEEEcCCCchhhHHHHHHhccccccCCCCceEEEEeCCCCCHHHHHHHHHH
Q 002663 170 DDEVVGIESI--KDKLIDLMVNGRSKSSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRTIIK 247 (895)
Q Consensus 170 ~~~~vGr~~~--~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~l~~~i~~ 247 (895)
++.++|-... ...+..+....+....-+.|+|..|+|||+|++++.+.......-..+++++. .++...+..
T Consensus 115 dnFv~g~~n~~A~~aa~~~a~~~~~~~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~------~~f~~~~~~ 188 (450)
T PRK14087 115 ENFVIGSSNEQAFIAVQTVSKNPGISYNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSG------DEFARKAVD 188 (450)
T ss_pred hcccCCCcHHHHHHHHHHHHhCcCcccCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH------HHHHHHHHH
Confidence 3445676443 22333333222222356899999999999999999984211111123345543 344444444
Q ss_pred HHHhccCCC------CCCCCccCcCc---cc---cH-HHHHHhcCC-CCCCcEEEEEcCch---------hhhhhhccCC
Q 002663 248 EFHRLSKHG------RDGPDRHAEGP---LE---GQ-KDVEHALLD-NKKCSRIIVTTRHM---------NVAKFCKSSS 304 (895)
Q Consensus 248 ~l~~~~~~~------~~~~~~~~~~~---L~---~~-~~l~~~l~~-~~~gs~iivTTR~~---------~v~~~~~~~~ 304 (895)
.+....... ....+.-..+. +. .+ +.+...+.. ...|..||+|+... ++...+...
T Consensus 189 ~l~~~~~~~~~~~~~~~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~G- 267 (450)
T PRK14087 189 ILQKTHKEIEQFKNEICQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMG- 267 (450)
T ss_pred HHHHhhhHHHHHHHHhccCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCC-
Confidence 333210000 00000000111 11 11 122222211 12244688886532 233333322
Q ss_pred CcceeeccCCChhhHHHHHHHhhcC
Q 002663 305 SVRIHELETLPPDEAWKLFCRKAFG 329 (895)
Q Consensus 305 ~~~~~~l~~L~~~es~~Lf~~~a~~ 329 (895)
-++++++++.++-.+++.+++-.
T Consensus 268 --l~~~L~~pd~e~r~~iL~~~~~~ 290 (450)
T PRK14087 268 --LSIAIQKLDNKTATAIIKKEIKN 290 (450)
T ss_pred --ceeccCCcCHHHHHHHHHHHHHh
Confidence 57889999999999999988743
No 173
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.94 E-value=0.0037 Score=61.38 Aligned_cols=81 Identities=25% Similarity=0.231 Sum_probs=40.5
Q ss_pred cCCCceeeEEecCCC--CCC-cCccccccccCCCeEeecCCCccc---ccccccCcCCCcEEEcCcccccccch----hh
Q 002663 536 IANFKLMKVLDLEDS--PIN-YLPEGVGNLFNLHLLNARNTKLKI---IPKSIGNLLSLEILVLARTFVSELPE----EI 605 (895)
Q Consensus 536 ~~~~~~L~~L~L~~~--~~~-~l~~~i~~l~~Lr~L~L~~~~l~~---lp~~i~~l~~L~~L~L~~~~l~~lp~----~i 605 (895)
|..+++|+.|.++.| ++. .++-...++++|++|++++|+|.. +++ +..+.+|..|++.+|..+.+-. .+
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~p-l~~l~nL~~Ldl~n~~~~~l~dyre~vf 139 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRP-LKELENLKSLDLFNCSVTNLDDYREKVF 139 (260)
T ss_pred CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccch-hhhhcchhhhhcccCCccccccHHHHHH
Confidence 344556666666666 322 344344445666666666666552 221 3445556666666554433321 23
Q ss_pred hccccCCeEEee
Q 002663 606 RNLKKLRSLIVF 617 (895)
Q Consensus 606 ~~l~~L~~L~l~ 617 (895)
.-+++|++|+-.
T Consensus 140 ~ll~~L~~LD~~ 151 (260)
T KOG2739|consen 140 LLLPSLKYLDGC 151 (260)
T ss_pred HHhhhhcccccc
Confidence 345555555443
No 174
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.90 E-value=0.0056 Score=55.30 Aligned_cols=23 Identities=35% Similarity=0.501 Sum_probs=21.0
Q ss_pred eEEEEEcCCCchhhHHHHHHhcc
Q 002663 195 SVVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
--|+|.||+|+||||+++.+.+.
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~ 28 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEK 28 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHH
Confidence 46899999999999999999984
No 175
>COG3899 Predicted ATPase [General function prediction only]
Probab=95.89 E-value=0.11 Score=62.63 Aligned_cols=46 Identities=26% Similarity=0.447 Sum_probs=39.4
Q ss_pred ceeechhhHHHHHHHHhcC-CCCceEEEEEcCCCchhhHHHHHHhcc
Q 002663 172 EVVGIESIKDKLIDLMVNG-RSKSSVVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 172 ~~vGr~~~~~~l~~~L~~~-~~~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
.++||+.+++.+...+... .....++.+.|..|||||+++++|...
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~ 47 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKP 47 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHH
Confidence 3689999999999988754 234579999999999999999999984
No 176
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.88 E-value=0.00055 Score=67.04 Aligned_cols=78 Identities=19% Similarity=0.213 Sum_probs=41.7
Q ss_pred eeeEEecCCCCCCcCccccccccCCCeEeecCCCcccccccccCcCCCcEEEcCcccccccch--hhhccccCCeEEeec
Q 002663 541 LMKVLDLEDSPINYLPEGVGNLFNLHLLNARNTKLKIIPKSIGNLLSLEILVLARTFVSELPE--EIRNLKKLRSLIVFH 618 (895)
Q Consensus 541 ~L~~L~L~~~~~~~l~~~i~~l~~Lr~L~L~~~~l~~lp~~i~~l~~L~~L~L~~~~l~~lp~--~i~~l~~L~~L~l~~ 618 (895)
+.+.|++-+|++.++ +.+.+|+.|++|.|+-|+|+.+.+ +..+++|+.|.|+.|.|..+-. .+.++|+|+.|.|..
T Consensus 20 ~vkKLNcwg~~L~DI-sic~kMp~lEVLsLSvNkIssL~p-l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~E 97 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDI-SICEKMPLLEVLSLSVNKISSLAP-LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDE 97 (388)
T ss_pred HhhhhcccCCCccHH-HHHHhcccceeEEeeccccccchh-HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhcc
Confidence 344455555555433 123355555555555555555532 4555666666666665554433 345666777776665
Q ss_pred cc
Q 002663 619 YK 620 (895)
Q Consensus 619 ~~ 620 (895)
|.
T Consensus 98 NP 99 (388)
T KOG2123|consen 98 NP 99 (388)
T ss_pred CC
Confidence 43
No 177
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=95.88 E-value=0.16 Score=54.59 Aligned_cols=48 Identities=29% Similarity=0.394 Sum_probs=40.5
Q ss_pred CCCceeechhhHHHHHHHHhcCCCCceEEEEEcCCCchhhHHHHHHhcc
Q 002663 169 EDDEVVGIESIKDKLIDLMVNGRSKSSVVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 169 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
....++|-++..+.+...+..+. -.+.+.|+|+.|+||||+|+.+...
T Consensus 21 ~~~~l~Gh~~a~~~L~~a~~~gr-l~ha~L~~G~~G~GKttlA~~lA~~ 68 (351)
T PRK09112 21 ENTRLFGHEEAEAFLAQAYREGK-LHHALLFEGPEGIGKATLAFHLANH 68 (351)
T ss_pred chhhccCcHHHHHHHHHHHHcCC-CCeeEeeECCCCCCHHHHHHHHHHH
Confidence 45679999999999999997653 3457899999999999999888774
No 178
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=95.87 E-value=0.013 Score=59.31 Aligned_cols=44 Identities=25% Similarity=0.377 Sum_probs=30.2
Q ss_pred eeechhhH-HHHHHHHhcCCCCceEEEEEcCCCchhhHHHHHHhcc
Q 002663 173 VVGIESIK-DKLIDLMVNGRSKSSVVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 173 ~vGr~~~~-~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
+.|..+.. ..+.++.. .....+.+.|+|..|+|||+||+++++.
T Consensus 21 ~~~~~~~~~~~l~~~~~-~~~~~~~~~l~G~~G~GKT~La~ai~~~ 65 (227)
T PRK08903 21 VAGENAELVARLRELAA-GPVADRFFYLWGEAGSGRSHLLQALVAD 65 (227)
T ss_pred ccCCcHHHHHHHHHHHh-ccCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 34554444 44444433 2233567899999999999999999984
No 179
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=95.83 E-value=0.081 Score=56.90 Aligned_cols=152 Identities=18% Similarity=0.135 Sum_probs=77.7
Q ss_pred CCceeechhhHHHHH--HHHhcCCCCceEEEEEcCCCchhhHHHHHHhccccccCCCCceEEEEeCCCCCHHHHHHHHHH
Q 002663 170 DDEVVGIESIKDKLI--DLMVNGRSKSSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRTIIK 247 (895)
Q Consensus 170 ~~~~vGr~~~~~~l~--~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~l~~~i~~ 247 (895)
++.++|-......-. .+-...+.....+-|||..|.|||-|++++.+. ..........+.++. .++......
T Consensus 87 dnFv~g~~N~~A~aa~~~va~~~g~~~nplfi~G~~GlGKTHLl~Aign~--~~~~~~~a~v~y~~s----e~f~~~~v~ 160 (408)
T COG0593 87 DNFVVGPSNRLAYAAAKAVAENPGGAYNPLFIYGGVGLGKTHLLQAIGNE--ALANGPNARVVYLTS----EDFTNDFVK 160 (408)
T ss_pred hheeeCCchHHHHHHHHHHHhccCCcCCcEEEECCCCCCHHHHHHHHHHH--HHhhCCCceEEeccH----HHHHHHHHH
Confidence 445566555443322 222222234678999999999999999999994 555554333333322 222222222
Q ss_pred HHHhc----cCCCCCCCCccCcC---ccccH----HHHHHhcCC-CCCCcEEEEEcCc---------hhhhhhhccCCCc
Q 002663 248 EFHRL----SKHGRDGPDRHAEG---PLEGQ----KDVEHALLD-NKKCSRIIVTTRH---------MNVAKFCKSSSSV 306 (895)
Q Consensus 248 ~l~~~----~~~~~~~~~~~~~~---~L~~~----~~l~~~l~~-~~~gs~iivTTR~---------~~v~~~~~~~~~~ 306 (895)
.+... -+... ..+....+ .+... +.+-..|.. ...|-.||+|++. .++...+...
T Consensus 161 a~~~~~~~~Fk~~y-~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~G--- 236 (408)
T COG0593 161 ALRDNEMEKFKEKY-SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWG--- 236 (408)
T ss_pred HHHhhhHHHHHHhh-ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhce---
Confidence 22210 00000 00000011 11111 111111111 1123379999854 2333444433
Q ss_pred ceeeccCCChhhHHHHHHHhhcCCC
Q 002663 307 RIHELETLPPDEAWKLFCRKAFGPS 331 (895)
Q Consensus 307 ~~~~l~~L~~~es~~Lf~~~a~~~~ 331 (895)
-++++.+++.+....++.+++....
T Consensus 237 l~~~I~~Pd~e~r~aiL~kka~~~~ 261 (408)
T COG0593 237 LVVEIEPPDDETRLAILRKKAEDRG 261 (408)
T ss_pred eEEeeCCCCHHHHHHHHHHHHHhcC
Confidence 6899999999999999999775443
No 180
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.83 E-value=0.0048 Score=35.83 Aligned_cols=19 Identities=32% Similarity=0.501 Sum_probs=10.5
Q ss_pred CCeEeecCCCccccccccc
Q 002663 565 LHLLNARNTKLKIIPKSIG 583 (895)
Q Consensus 565 Lr~L~L~~~~l~~lp~~i~ 583 (895)
|++|++++|.++.+|++++
T Consensus 2 L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp ESEEEETSSEESEEGTTTT
T ss_pred ccEEECCCCcCEeCChhhc
Confidence 5555555555555555443
No 181
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=95.82 E-value=0.044 Score=60.79 Aligned_cols=60 Identities=23% Similarity=0.240 Sum_probs=35.9
Q ss_pred CCceeechhhH--HHHHHHHhcCCCCceEEEEEcCCCchhhHHHHHHhccccccCCC--CceEEEE
Q 002663 170 DDEVVGIESIK--DKLIDLMVNGRSKSSVVAVVGEGGLGKTTLAGKLFNNEGLKTHF--SCRAWVT 231 (895)
Q Consensus 170 ~~~~vGr~~~~--~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F--~~~~wv~ 231 (895)
++.++|.+... ..+.++..........+.|+|..|+|||+||+++++. +.... ..++|++
T Consensus 110 d~fi~g~~n~~a~~~~~~~~~~~~~~~n~l~l~G~~G~GKThL~~ai~~~--l~~~~~~~~v~yi~ 173 (405)
T TIGR00362 110 DNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNE--ILENNPNAKVVYVS 173 (405)
T ss_pred cccccCCcHHHHHHHHHHHHhCcCccCCeEEEECCCCCcHHHHHHHHHHH--HHHhCCCCcEEEEE
Confidence 34456765542 2223333222222457899999999999999999985 33332 2345664
No 182
>CHL00095 clpC Clp protease ATP binding subunit
Probab=95.81 E-value=0.0071 Score=73.12 Aligned_cols=45 Identities=29% Similarity=0.477 Sum_probs=38.4
Q ss_pred CceeechhhHHHHHHHHhcCCCCceEEEEEcCCCchhhHHHHHHhcc
Q 002663 171 DEVVGIESIKDKLIDLMVNGRSKSSVVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
+.++||+++++++.+.|.... ..-+.++|.+|+|||++|+.++..
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~--~~n~lL~G~pGvGKTal~~~la~~ 223 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRT--KNNPILIGEPGVGKTAIAEGLAQR 223 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccc--cCCeEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999997653 334569999999999999999885
No 183
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=95.71 E-value=0.025 Score=58.64 Aligned_cols=76 Identities=25% Similarity=0.340 Sum_probs=64.1
Q ss_pred CCceeechhhHHHHHHHHhcCCCCc-eEEEEEcCCCchhhHHHHHHhccccccCCCCceEEEEeCCCCCHHHHHHHHHHH
Q 002663 170 DDEVVGIESIKDKLIDLMVNGRSKS-SVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRTIIKE 248 (895)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~~~~~~-~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~l~~~i~~~ 248 (895)
++.+.+|+..+..+..++...+... ..|-|+|-.|.|||.+.+++++.. . -..+|+++...++...++..|+.+
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~--n---~~~vw~n~~ecft~~~lle~IL~~ 79 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKL--N---LENVWLNCVECFTYAILLEKILNK 79 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhc--C---CcceeeehHHhccHHHHHHHHHHH
Confidence 5678899999999999997766544 456899999999999999999853 1 235799999999999999999998
Q ss_pred HH
Q 002663 249 FH 250 (895)
Q Consensus 249 l~ 250 (895)
..
T Consensus 80 ~~ 81 (438)
T KOG2543|consen 80 SQ 81 (438)
T ss_pred hc
Confidence 85
No 184
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.70 E-value=0.0066 Score=55.01 Aligned_cols=21 Identities=38% Similarity=0.564 Sum_probs=19.7
Q ss_pred EEEEcCCCchhhHHHHHHhcc
Q 002663 197 VAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 197 v~I~G~gGiGKTtLA~~v~~~ 217 (895)
|+|.|+.|+||||+|+++...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999984
No 185
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.70 E-value=0.0068 Score=59.47 Aligned_cols=22 Identities=41% Similarity=0.656 Sum_probs=20.6
Q ss_pred EEEEEcCCCchhhHHHHHHhcc
Q 002663 196 VVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 196 vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
||||.|.+|+||||+|+++...
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~ 22 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQI 22 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999999884
No 186
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=95.62 E-value=0.063 Score=59.76 Aligned_cols=148 Identities=15% Similarity=0.152 Sum_probs=72.7
Q ss_pred CCceeechhhH--HHHHHHHhcCCCCceEEEEEcCCCchhhHHHHHHhccccccCCC-C-ceEEEEeCCCCCHHHHHHHH
Q 002663 170 DDEVVGIESIK--DKLIDLMVNGRSKSSVVAVVGEGGLGKTTLAGKLFNNEGLKTHF-S-CRAWVTVGKEYNKNDLLRTI 245 (895)
Q Consensus 170 ~~~~vGr~~~~--~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F-~-~~~wv~~~~~~~~~~l~~~i 245 (895)
++.++|-.... ..+.+.... .....-+.|||..|+|||+||+++++. +.... . .++|++. .++...+
T Consensus 105 dnFv~g~~n~~a~~~~~~~~~~-~~~~n~l~lyG~~G~GKTHLl~ai~~~--l~~~~~~~~v~yi~~------~~f~~~~ 175 (440)
T PRK14088 105 ENFVVGPGNSFAYHAALEVAKN-PGRYNPLFIYGGVGLGKTHLLQSIGNY--VVQNEPDLRVMYITS------EKFLNDL 175 (440)
T ss_pred cccccCCchHHHHHHHHHHHhC-cCCCCeEEEEcCCCCcHHHHHHHHHHH--HHHhCCCCeEEEEEH------HHHHHHH
Confidence 34456754432 233333322 222456999999999999999999995 33332 2 3456653 2344444
Q ss_pred HHHHHhccCC-----CCCCCCccCcCccc------cH-HHHHHhcCC-CCCCcEEEEEcC-chhhh----h----hhccC
Q 002663 246 IKEFHRLSKH-----GRDGPDRHAEGPLE------GQ-KDVEHALLD-NKKCSRIIVTTR-HMNVA----K----FCKSS 303 (895)
Q Consensus 246 ~~~l~~~~~~-----~~~~~~~~~~~~L~------~~-~~l~~~l~~-~~~gs~iivTTR-~~~v~----~----~~~~~ 303 (895)
...+...... .....+.-..+.++ .+ +.+...+.. ...|..||+||. ...-. . .+..
T Consensus 176 ~~~~~~~~~~~f~~~~~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~- 254 (440)
T PRK14088 176 VDSMKEGKLNEFREKYRKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQM- 254 (440)
T ss_pred HHHHhcccHHHHHHHHHhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhc-
Confidence 3333211000 00000000011110 01 112121111 012446888875 32211 1 1221
Q ss_pred CCcceeeccCCChhhHHHHHHHhhcC
Q 002663 304 SSVRIHELETLPPDEAWKLFCRKAFG 329 (895)
Q Consensus 304 ~~~~~~~l~~L~~~es~~Lf~~~a~~ 329 (895)
..++++++.+.+.-.+++.+.+-.
T Consensus 255 --gl~v~i~~pd~e~r~~IL~~~~~~ 278 (440)
T PRK14088 255 --GLVAKLEPPDEETRKKIARKMLEI 278 (440)
T ss_pred --CceEeeCCCCHHHHHHHHHHHHHh
Confidence 157899999999999999988754
No 187
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=95.59 E-value=0.05 Score=61.19 Aligned_cols=60 Identities=23% Similarity=0.212 Sum_probs=36.5
Q ss_pred Cceeechhh--HHHHHHHHhcCCCCceEEEEEcCCCchhhHHHHHHhccccccCCC--CceEEEEe
Q 002663 171 DEVVGIESI--KDKLIDLMVNGRSKSSVVAVVGEGGLGKTTLAGKLFNNEGLKTHF--SCRAWVTV 232 (895)
Q Consensus 171 ~~~vGr~~~--~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F--~~~~wv~~ 232 (895)
+.++|.... ...+.++....+....-+.|+|..|+|||+||+++.+. ....+ -.++|++.
T Consensus 123 ~fv~g~~n~~a~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~v~yi~~ 186 (450)
T PRK00149 123 NFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNY--ILEKNPNAKVVYVTS 186 (450)
T ss_pred ccccCCCcHHHHHHHHHHHhCcCccCCeEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEEEH
Confidence 345675443 23333333322223456899999999999999999995 44443 22446543
No 188
>PRK13531 regulatory ATPase RavA; Provisional
Probab=95.55 E-value=0.013 Score=64.01 Aligned_cols=43 Identities=16% Similarity=0.178 Sum_probs=37.7
Q ss_pred CceeechhhHHHHHHHHhcCCCCceEEEEEcCCCchhhHHHHHHhcc
Q 002663 171 DEVVGIESIKDKLIDLMVNGRSKSSVVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
..++|+++.++.+...+..+. -|.|+|++|+|||++|+.+...
T Consensus 20 ~~i~gre~vI~lll~aalag~----hVLL~GpPGTGKT~LAraLa~~ 62 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSGE----SVFLLGPPGIAKSLIARRLKFA 62 (498)
T ss_pred hhccCcHHHHHHHHHHHccCC----CEEEECCCChhHHHHHHHHHHH
Confidence 458999999999999887654 6789999999999999999984
No 189
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=95.51 E-value=0.11 Score=56.83 Aligned_cols=135 Identities=16% Similarity=0.164 Sum_probs=77.8
Q ss_pred hhHHHHHHHHhcCCCCceEEEEEcCCCchhhHHHHHHhccccccCCCCceEEEEeCCC-CCHHHHHHHHHHHHHhccCCC
Q 002663 178 SIKDKLIDLMVNGRSKSSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKE-YNKNDLLRTIIKEFHRLSKHG 256 (895)
Q Consensus 178 ~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~-~~~~~l~~~i~~~l~~~~~~~ 256 (895)
....++.+.+.... .++.|+|+-++||||+++.+... .... .+++..-.. .+..++ .+............
T Consensus 24 ~~~~~l~~~~~~~~---~i~~i~GpR~~GKTtll~~l~~~--~~~~---~iy~~~~d~~~~~~~l-~d~~~~~~~~~~~~ 94 (398)
T COG1373 24 KLLPRLIKKLDLRP---FIILILGPRQVGKTTLLKLLIKG--LLEE---IIYINFDDLRLDRIEL-LDLLRAYIELKERE 94 (398)
T ss_pred hhhHHHHhhcccCC---cEEEEECCccccHHHHHHHHHhh--CCcc---eEEEEecchhcchhhH-HHHHHHHHHhhccC
Confidence 33444444443322 29999999999999999777663 2222 555544332 222222 33333332221110
Q ss_pred CCCCCccCcCccccHHHHHHhcCCCCCCcEEEEEcCchhhhhhhcc---CCCcceeeccCCChhhHHHH
Q 002663 257 RDGPDRHAEGPLEGQKDVEHALLDNKKCSRIIVTTRHMNVAKFCKS---SSSVRIHELETLPPDEAWKL 322 (895)
Q Consensus 257 ~~~~~~~~~~~L~~~~~l~~~l~~~~~gs~iivTTR~~~v~~~~~~---~~~~~~~~l~~L~~~es~~L 322 (895)
....-.+..+.+.+|......+.+.++. +|++|+-+..+...... .+....+++-||+..|-..+
T Consensus 95 ~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~ 162 (398)
T COG1373 95 KSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKL 162 (398)
T ss_pred CceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhh
Confidence 0111113345577999988888888777 89999887654332111 12236899999999998764
No 190
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=95.50 E-value=0.02 Score=56.97 Aligned_cols=49 Identities=14% Similarity=0.204 Sum_probs=37.2
Q ss_pred CCceEEEEEcCCCchhhHHHHHHhccccccCCCCceEEEEeCCCCCHHHHHH
Q 002663 192 SKSSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLR 243 (895)
Q Consensus 192 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~l~~ 243 (895)
+.-+++.|+|.+|+|||++|.++... .......++|++... ++...+.+
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~--~~~~g~~v~yi~~e~-~~~~rl~~ 58 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVN--AARQGKKVVYIDTEG-LSPERFKQ 58 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCC-CCHHHHHH
Confidence 44679999999999999999988874 334456788998875 66655444
No 191
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=95.48 E-value=0.13 Score=55.08 Aligned_cols=149 Identities=15% Similarity=0.170 Sum_probs=81.8
Q ss_pred ceee-chhhHHHHHHHHhcCCCCceEEEEEcCCCchhhHHHHHHhccccccC-------------------CCCceEEEE
Q 002663 172 EVVG-IESIKDKLIDLMVNGRSKSSVVAVVGEGGLGKTTLAGKLFNNEGLKT-------------------HFSCRAWVT 231 (895)
Q Consensus 172 ~~vG-r~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~-------------------~F~~~~wv~ 231 (895)
.++| -+..++.+...+..+. -.+..-++|+.|+||||+|+.+.+..--.. .+....++.
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~~-l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i~ 84 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKNR-LSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLVA 84 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEec
Confidence 4566 6667777777776543 346779999999999999988866311000 121222332
Q ss_pred e-CCCCCHHHHHHHHHHHHHhccCCCCCCCCccC---cCcc--ccHHHHHHhcCCCCCCcEEEEEcCch-hhhhhhccCC
Q 002663 232 V-GKEYNKNDLLRTIIKEFHRLSKHGRDGPDRHA---EGPL--EGQKDVEHALLDNKKCSRIIVTTRHM-NVAKFCKSSS 304 (895)
Q Consensus 232 ~-~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~---~~~L--~~~~~l~~~l~~~~~gs~iivTTR~~-~v~~~~~~~~ 304 (895)
. +....+.+ .+++.+.+...... ....... .+.+ ...+.+...+..-..++.+|++|.+. .+......-
T Consensus 85 ~~~~~i~id~-ir~l~~~~~~~~~~--~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~TIrSR- 160 (329)
T PRK08058 85 PDGQSIKKDQ-IRYLKEEFSKSGVE--SNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTILSR- 160 (329)
T ss_pred cccccCCHHH-HHHHHHHHhhCCcc--cCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcHHHHhh-
Confidence 2 22223333 33444444432111 0000000 1111 13445556666656677777777654 444433322
Q ss_pred CcceeeccCCChhhHHHHHHHh
Q 002663 305 SVRIHELETLPPDEAWKLFCRK 326 (895)
Q Consensus 305 ~~~~~~l~~L~~~es~~Lf~~~ 326 (895)
..++++.+++.++..+.+...
T Consensus 161 -c~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 161 -CQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred -ceeeeCCCCCHHHHHHHHHHc
Confidence 268999999999998888654
No 192
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=95.47 E-value=0.054 Score=55.42 Aligned_cols=75 Identities=16% Similarity=0.231 Sum_probs=56.6
Q ss_pred hhHHHHHHHHhcC-CCCceEEEEEcCCCchhhHHHHHHhccccccCCCC------ceEEEEeCCCCCHHHHHHHHHHHHH
Q 002663 178 SIKDKLIDLMVNG-RSKSSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFS------CRAWVTVGKEYNKNDLLRTIIKEFH 250 (895)
Q Consensus 178 ~~~~~l~~~L~~~-~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~------~~~wv~~~~~~~~~~l~~~i~~~l~ 250 (895)
+.++++.++|... ....+-+.|||..|+|||++++++... .-..++ .++.|.....++...+...|+.+++
T Consensus 44 ~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~--hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lg 121 (302)
T PF05621_consen 44 EALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRL--HPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALG 121 (302)
T ss_pred HHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHH--CCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhC
Confidence 4456677777654 345677999999999999999999874 222221 4667788889999999999999998
Q ss_pred hccC
Q 002663 251 RLSK 254 (895)
Q Consensus 251 ~~~~ 254 (895)
....
T Consensus 122 aP~~ 125 (302)
T PF05621_consen 122 APYR 125 (302)
T ss_pred cccC
Confidence 7643
No 193
>PRK10865 protein disaggregation chaperone; Provisional
Probab=95.44 E-value=0.013 Score=70.87 Aligned_cols=45 Identities=24% Similarity=0.422 Sum_probs=38.7
Q ss_pred CceeechhhHHHHHHHHhcCCCCceEEEEEcCCCchhhHHHHHHhcc
Q 002663 171 DEVVGIESIKDKLIDLMVNGRSKSSVVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
+.+|||+.++.++.+.|.... -.-+.++|.+|+||||+|+.+...
T Consensus 178 ~~vigr~~ei~~~i~iL~r~~--~~n~lL~G~pGvGKT~l~~~la~~ 222 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRRT--KNNPVLIGEPGVGKTAIVEGLAQR 222 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcCC--cCceEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999998654 335669999999999999999985
No 194
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.43 E-value=0.001 Score=65.20 Aligned_cols=98 Identities=22% Similarity=0.206 Sum_probs=74.4
Q ss_pred CcceeEEEEEccCCCCccchhcccCCCceeeEEecCCCCCCcCccccccccCCCeEeecCCCccccc--ccccCcCCCcE
Q 002663 513 DWKVRSVILFNVDKLPDSFMKSCIANFKLMKVLDLEDSPINYLPEGVGNLFNLHLLNARNTKLKIIP--KSIGNLLSLEI 590 (895)
Q Consensus 513 ~~~lr~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~i~~l~~Lr~L~L~~~~l~~lp--~~i~~l~~L~~ 590 (895)
..+++.|.++++...+ -++..+|+.|+||.|+-|.|+.+. .+..|++|+.|.|+.|.|..+- ..+.++++|++
T Consensus 18 l~~vkKLNcwg~~L~D----Isic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDD----ISICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT 92 (388)
T ss_pred HHHhhhhcccCCCccH----HHHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence 3456677777776522 255788999999999999999874 4789999999999999988664 34678999999
Q ss_pred EEcCcc-cccccch-----hhhccccCCeEE
Q 002663 591 LVLART-FVSELPE-----EIRNLKKLRSLI 615 (895)
Q Consensus 591 L~L~~~-~l~~lp~-----~i~~l~~L~~L~ 615 (895)
|-|..| ....-+. .+.-||+|+.||
T Consensus 93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 999877 3333322 355788888885
No 195
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.42 E-value=0.019 Score=57.97 Aligned_cols=27 Identities=33% Similarity=0.449 Sum_probs=23.8
Q ss_pred CCCceEEEEEcCCCchhhHHHHHHhcc
Q 002663 191 RSKSSVVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 191 ~~~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
.....+|||.|+.|.|||||++.+...
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~ 56 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEAL 56 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 345789999999999999999999973
No 196
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.40 E-value=0.01 Score=46.71 Aligned_cols=22 Identities=41% Similarity=0.694 Sum_probs=20.1
Q ss_pred EEEEEcCCCchhhHHHHHHhcc
Q 002663 196 VVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 196 vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
+|+|.|..|+||||+|+.+.+.
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999984
No 197
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.39 E-value=0.0079 Score=59.12 Aligned_cols=86 Identities=17% Similarity=0.284 Sum_probs=59.4
Q ss_pred cccCCCceeeEEecCCCCCCcCccccccccCCCeEeecCC--Ccc-cccccccCcCCCcEEEcCcccccccc--hhhhcc
Q 002663 534 SCIANFKLMKVLDLEDSPINYLPEGVGNLFNLHLLNARNT--KLK-IIPKSIGNLLSLEILVLARTFVSELP--EEIRNL 608 (895)
Q Consensus 534 ~~~~~~~~L~~L~L~~~~~~~l~~~i~~l~~Lr~L~L~~~--~l~-~lp~~i~~l~~L~~L~L~~~~l~~lp--~~i~~l 608 (895)
.....+..|+.|++.++.++.+ ..+..|++|++|.++.| .+. .++....++++|++|++++|.+..+- ..+..+
T Consensus 37 gl~d~~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l 115 (260)
T KOG2739|consen 37 GLTDEFVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKEL 115 (260)
T ss_pred cccccccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhh
Confidence 4455677777788777776644 23557889999999988 333 55555667789999999998665421 125577
Q ss_pred ccCCeEEeeccc
Q 002663 609 KKLRSLIVFHYK 620 (895)
Q Consensus 609 ~~L~~L~l~~~~ 620 (895)
++|..|++.+|.
T Consensus 116 ~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 116 ENLKSLDLFNCS 127 (260)
T ss_pred cchhhhhcccCC
Confidence 778888887763
No 198
>PRK06547 hypothetical protein; Provisional
Probab=95.37 E-value=0.02 Score=54.45 Aligned_cols=26 Identities=42% Similarity=0.507 Sum_probs=23.3
Q ss_pred CCceEEEEEcCCCchhhHHHHHHhcc
Q 002663 192 SKSSVVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 192 ~~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
....+|+|.|+.|+||||+|+.+...
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45789999999999999999999874
No 199
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.36 E-value=0.012 Score=58.43 Aligned_cols=26 Identities=35% Similarity=0.643 Sum_probs=23.0
Q ss_pred CCceEEEEEcCCCchhhHHHHHHhcc
Q 002663 192 SKSSVVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 192 ~~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
+...+|+|+|++|+||||||+.+...
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHH
Confidence 34579999999999999999999974
No 200
>PRK05541 adenylylsulfate kinase; Provisional
Probab=95.32 E-value=0.015 Score=56.15 Aligned_cols=36 Identities=33% Similarity=0.530 Sum_probs=28.9
Q ss_pred ceEEEEEcCCCchhhHHHHHHhccccccCCCCceEEEE
Q 002663 194 SSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVT 231 (895)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~ 231 (895)
..+|.|.|+.|+||||+|+.++.. ....+...++++
T Consensus 7 ~~~I~i~G~~GsGKst~a~~l~~~--l~~~~~~~~~~~ 42 (176)
T PRK05541 7 GYVIWITGLAGSGKTTIAKALYER--LKLKYSNVIYLD 42 (176)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH--HHHcCCcEEEEe
Confidence 459999999999999999999984 555566666653
No 201
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.27 E-value=0.014 Score=58.16 Aligned_cols=25 Identities=32% Similarity=0.688 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCchhhHHHHHHhcc
Q 002663 193 KSSVVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
...+|+|.|.+|+||||||+.+...
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999999999999984
No 202
>PRK08233 hypothetical protein; Provisional
Probab=95.26 E-value=0.014 Score=56.76 Aligned_cols=24 Identities=29% Similarity=0.527 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCchhhHHHHHHhcc
Q 002663 194 SSVVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
..+|+|.|.+|+||||+|+.+...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 469999999999999999999974
No 203
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=95.26 E-value=0.058 Score=64.31 Aligned_cols=48 Identities=27% Similarity=0.578 Sum_probs=39.9
Q ss_pred CCCceeechhhHHHHHHHHhcC----CCCceEEEEEcCCCchhhHHHHHHhc
Q 002663 169 EDDEVVGIESIKDKLIDLMVNG----RSKSSVVAVVGEGGLGKTTLAGKLFN 216 (895)
Q Consensus 169 ~~~~~vGr~~~~~~l~~~L~~~----~~~~~vv~I~G~gGiGKTtLA~~v~~ 216 (895)
-+.+.+|.+..+++|.++|... .....++.++|++|+||||+|+.++.
T Consensus 320 l~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~ 371 (784)
T PRK10787 320 LDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAK 371 (784)
T ss_pred hhhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHH
Confidence 3466899999999999988732 22356899999999999999999997
No 204
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=95.23 E-value=0.025 Score=50.67 Aligned_cols=40 Identities=30% Similarity=0.337 Sum_probs=29.1
Q ss_pred hhHHHHHHHHhcCCCCceEEEEEcCCCchhhHHHHHHhcc
Q 002663 178 SIKDKLIDLMVNGRSKSSVVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 178 ~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
++.+++.+.|...-..-.+|.+.|.-|.||||+++.+...
T Consensus 6 ~~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 6 KAMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 3445555555432223458999999999999999999985
No 205
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=95.22 E-value=0.037 Score=55.88 Aligned_cols=58 Identities=16% Similarity=0.226 Sum_probs=41.0
Q ss_pred HHHHHHHhcCCCCceEEEEEcCCCchhhHHHHHHhccccccCCCCceEEEEeCCCCCHHHH
Q 002663 181 DKLIDLMVNGRSKSSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDL 241 (895)
Q Consensus 181 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~l 241 (895)
..+.++|..+=..-.++.|+|.+|+||||+|.+++.. ....-..++|++.. .++...+
T Consensus 10 ~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~--~~~~~~~v~yi~~e-~~~~~r~ 67 (225)
T PRK09361 10 KMLDELLGGGFERGTITQIYGPPGSGKTNICLQLAVE--AAKNGKKVIYIDTE-GLSPERF 67 (225)
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEECC-CCCHHHH
Confidence 4455555444344679999999999999999998874 33345678899876 5555443
No 206
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=95.22 E-value=0.0097 Score=52.22 Aligned_cols=27 Identities=44% Similarity=0.546 Sum_probs=18.6
Q ss_pred EEEEcCCCchhhHHHHHHhccccccCCCC
Q 002663 197 VAVVGEGGLGKTTLAGKLFNNEGLKTHFS 225 (895)
Q Consensus 197 v~I~G~gGiGKTtLA~~v~~~~~~~~~F~ 225 (895)
|-|+|.+|+||||+|+++.. .+...|.
T Consensus 2 vLleg~PG~GKT~la~~lA~--~~~~~f~ 28 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALAR--SLGLSFK 28 (131)
T ss_dssp EEEES---HHHHHHHHHHHH--HTT--EE
T ss_pred EeeECCCccHHHHHHHHHHH--HcCCcee
Confidence 67999999999999999998 3555663
No 207
>PHA00729 NTP-binding motif containing protein
Probab=95.21 E-value=0.023 Score=55.87 Aligned_cols=25 Identities=32% Similarity=0.359 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCchhhHHHHHHhcc
Q 002663 193 KSSVVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
+...|.|.|.+|+||||||.++.+.
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~ 40 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARD 40 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHH
Confidence 3567999999999999999999884
No 208
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.15 E-value=0.016 Score=56.27 Aligned_cols=26 Identities=35% Similarity=0.553 Sum_probs=23.3
Q ss_pred CCceEEEEEcCCCchhhHHHHHHhcc
Q 002663 192 SKSSVVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 192 ~~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
+.+.+|||.|.+|.||||+|+.++..
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~ 31 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQ 31 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHH
Confidence 34679999999999999999999984
No 209
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.15 E-value=0.23 Score=55.53 Aligned_cols=160 Identities=16% Similarity=0.107 Sum_probs=88.5
Q ss_pred CCCCCCCceeechhhHHHHHHHHhcC-----------CCCceEEEEEcCCCchhhHHHHHHhccccccCCCCce------
Q 002663 165 SFFVEDDEVVGIESIKDKLIDLMVNG-----------RSKSSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCR------ 227 (895)
Q Consensus 165 ~~~~~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~------ 227 (895)
.+.+.-+++-|.|+.+.++.+..... -...+=|..||++|.||||+|+++++. ....|=.+
T Consensus 428 ~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne--~~~nFlsvkgpEL~ 505 (693)
T KOG0730|consen 428 MPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANE--AGMNFLSVKGPELF 505 (693)
T ss_pred CCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhh--hcCCeeeccCHHHH
Confidence 34455567778999888888766532 134678899999999999999999994 55555221
Q ss_pred -EEEEeCCCCCHHHHHHHHHHHHHhccCCC------CCCCCcc----CcCccccHHHHHHhcCCCCCCcEEEEE---cCc
Q 002663 228 -AWVTVGKEYNKNDLLRTIIKEFHRLSKHG------RDGPDRH----AEGPLEGQKDVEHALLDNKKCSRIIVT---TRH 293 (895)
Q Consensus 228 -~wv~~~~~~~~~~l~~~i~~~l~~~~~~~------~~~~~~~----~~~~L~~~~~l~~~l~~~~~gs~iivT---TR~ 293 (895)
-||- +-+..++.+.++........ +...... ..-.-.....+...+.+......|+|. -|.
T Consensus 506 sk~vG-----eSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRp 580 (693)
T KOG0730|consen 506 SKYVG-----ESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRP 580 (693)
T ss_pred HHhcC-----chHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCCh
Confidence 1322 23445566655543321110 0000000 000011233333344444434455553 333
Q ss_pred hhhhh-hhccCCCcceeeccCCChhhHHHHHHHhhcCCC
Q 002663 294 MNVAK-FCKSSSSVRIHELETLPPDEAWKLFCRKAFGPS 331 (895)
Q Consensus 294 ~~v~~-~~~~~~~~~~~~l~~L~~~es~~Lf~~~a~~~~ 331 (895)
..+-. .+....-++.+-++.-+.+--.++|+.++-+..
T Consensus 581 d~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp 619 (693)
T KOG0730|consen 581 DMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMP 619 (693)
T ss_pred hhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCC
Confidence 22222 233333447888888888888999999986654
No 210
>PTZ00301 uridine kinase; Provisional
Probab=95.11 E-value=0.016 Score=57.06 Aligned_cols=23 Identities=26% Similarity=0.632 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCchhhHHHHHHhc
Q 002663 194 SSVVAVVGEGGLGKTTLAGKLFN 216 (895)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~ 216 (895)
..+|||.|.+|.||||||+.+.+
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~ 25 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVS 25 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHH
Confidence 46899999999999999998876
No 211
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=95.09 E-value=0.1 Score=59.20 Aligned_cols=126 Identities=13% Similarity=0.175 Sum_probs=65.2
Q ss_pred ceEEEEEcCCCchhhHHHHHHhccccccCCC--CceEEEEeCCCCCHHHHHHHHHHHHHhcc----CCCCCCCCccCcCc
Q 002663 194 SSVVAVVGEGGLGKTTLAGKLFNNEGLKTHF--SCRAWVTVGKEYNKNDLLRTIIKEFHRLS----KHGRDGPDRHAEGP 267 (895)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F--~~~~wv~~~~~~~~~~l~~~i~~~l~~~~----~~~~~~~~~~~~~~ 267 (895)
...+.|||..|.|||.|++++++. ....+ ..++|++.. ++...+...+.... .......+.-..+.
T Consensus 314 ~NpL~LyG~sGsGKTHLL~AIa~~--a~~~~~g~~V~Yitae------ef~~el~~al~~~~~~~f~~~y~~~DLLlIDD 385 (617)
T PRK14086 314 YNPLFIYGESGLGKTHLLHAIGHY--ARRLYPGTRVRYVSSE------EFTNEFINSIRDGKGDSFRRRYREMDILLVDD 385 (617)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEeeHH------HHHHHHHHHHHhccHHHHHHHhhcCCEEEEeh
Confidence 345899999999999999999995 33322 234566532 23323222221100 00000000000111
Q ss_pred cc------cHH-HHHHhcCCC-CCCcEEEEEcCch---------hhhhhhccCCCcceeeccCCChhhHHHHHHHhhcCC
Q 002663 268 LE------GQK-DVEHALLDN-KKCSRIIVTTRHM---------NVAKFCKSSSSVRIHELETLPPDEAWKLFCRKAFGP 330 (895)
Q Consensus 268 L~------~~~-~l~~~l~~~-~~gs~iivTTR~~---------~v~~~~~~~~~~~~~~l~~L~~~es~~Lf~~~a~~~ 330 (895)
++ .|. .+...+... ..|..|||||+.. .+...+... -+++++..+.+.-.+++.+++-..
T Consensus 386 Iq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~G---Lvv~I~~PD~EtR~aIL~kka~~r 462 (617)
T PRK14086 386 IQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWG---LITDVQPPELETRIAILRKKAVQE 462 (617)
T ss_pred hccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcC---ceEEcCCCCHHHHHHHHHHHHHhc
Confidence 11 111 111111111 2245688888752 222333332 689999999999999999887544
No 212
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=95.09 E-value=0.055 Score=55.06 Aligned_cols=61 Identities=23% Similarity=0.306 Sum_probs=40.6
Q ss_pred HHHHHhcCCCCceEEEEEcCCCchhhHHHHHHhccccccC----CCCceEEEEeCCCCCHHHHHH
Q 002663 183 LIDLMVNGRSKSSVVAVVGEGGLGKTTLAGKLFNNEGLKT----HFSCRAWVTVGKEYNKNDLLR 243 (895)
Q Consensus 183 l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~----~F~~~~wv~~~~~~~~~~l~~ 243 (895)
+..+|..+=..-.++.|+|.+|+||||+|.+++....... ....++|++....++...+.+
T Consensus 8 lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~ 72 (235)
T cd01123 8 LDELLGGGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQ 72 (235)
T ss_pred hHhhccCCCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHH
Confidence 3444443333457999999999999999999875312222 135788998877766554433
No 213
>PRK06762 hypothetical protein; Provisional
Probab=95.08 E-value=0.016 Score=55.34 Aligned_cols=23 Identities=35% Similarity=0.611 Sum_probs=21.3
Q ss_pred eEEEEEcCCCchhhHHHHHHhcc
Q 002663 195 SVVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
.+|.|.|++|+||||+|+++.+.
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~ 25 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQER 25 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999999984
No 214
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=95.08 E-value=0.021 Score=52.58 Aligned_cols=37 Identities=32% Similarity=0.354 Sum_probs=27.2
Q ss_pred eEEEEEcCCCchhhHHHHHHhccccccCCCCceEEEEeC
Q 002663 195 SVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVG 233 (895)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~ 233 (895)
..+.|+|++|+||||+|+.+... .......++++..+
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~~~~ 39 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARE--LGPPGGGVIYIDGE 39 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhc--cCCCCCCEEEECCE
Confidence 57899999999999999999984 33332345555443
No 215
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=95.08 E-value=0.049 Score=54.65 Aligned_cols=56 Identities=23% Similarity=0.216 Sum_probs=38.5
Q ss_pred HHHHHHHHhcCCCCceEEEEEcCCCchhhHHHHHHhccccccCCCCceEEEEeCCCCC
Q 002663 180 KDKLIDLMVNGRSKSSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYN 237 (895)
Q Consensus 180 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~ 237 (895)
+..+.++|..+=..-+++.|+|.+|+||||+|.+++.. ....-..++|++....+.
T Consensus 5 i~~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~--~~~~g~~v~yi~~e~~~~ 60 (218)
T cd01394 5 CKGLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVE--TAGQGKKVAYIDTEGLSS 60 (218)
T ss_pred hhHHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEECCCCCH
Confidence 34455655444344679999999999999999998874 333345677887654443
No 216
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.08 E-value=0.016 Score=53.65 Aligned_cols=21 Identities=38% Similarity=0.623 Sum_probs=19.6
Q ss_pred EEEEEcCCCchhhHHHHHHhc
Q 002663 196 VVAVVGEGGLGKTTLAGKLFN 216 (895)
Q Consensus 196 vv~I~G~gGiGKTtLA~~v~~ 216 (895)
+|.++|++|+||||+|+.+..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999996
No 217
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=95.00 E-value=0.016 Score=52.79 Aligned_cols=21 Identities=43% Similarity=0.513 Sum_probs=19.6
Q ss_pred EEEEcCCCchhhHHHHHHhcc
Q 002663 197 VAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 197 v~I~G~gGiGKTtLA~~v~~~ 217 (895)
|.|+|++|+||||+|+.+++.
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 579999999999999999995
No 218
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=94.96 E-value=0.059 Score=57.84 Aligned_cols=78 Identities=19% Similarity=0.354 Sum_probs=49.1
Q ss_pred CCceeechhhHHHHHHHHhcC------------CCCceEEEEEcCCCchhhHHHHHHhccccccCCC---CceEEEEeCC
Q 002663 170 DDEVVGIESIKDKLIDLMVNG------------RSKSSVVAVVGEGGLGKTTLAGKLFNNEGLKTHF---SCRAWVTVGK 234 (895)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~~------------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F---~~~~wv~~~~ 234 (895)
+..+||.++.++.+.-.+... ....+-|.++|++|+||||+|+++... ....| +..-|...+.
T Consensus 11 d~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~--l~~~fi~vdat~~~e~g~ 88 (441)
T TIGR00390 11 DKYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKL--ANAPFIKVEATKFTEVGY 88 (441)
T ss_pred hhhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHH--hCCeEEEeecceeecCCc
Confidence 356899999998887666531 112367899999999999999999984 43333 2222222211
Q ss_pred -CCCHHHHHHHHHHHH
Q 002663 235 -EYNKNDLLRTIIKEF 249 (895)
Q Consensus 235 -~~~~~~l~~~i~~~l 249 (895)
..+...+++.+....
T Consensus 89 vG~dvE~i~r~l~e~A 104 (441)
T TIGR00390 89 VGRDVESMVRDLTDAA 104 (441)
T ss_pred ccCCHHHHHHHHHHHH
Confidence 124556666555443
No 219
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=94.94 E-value=0.27 Score=49.84 Aligned_cols=159 Identities=17% Similarity=0.204 Sum_probs=93.1
Q ss_pred CCCceeechhhHHHHHHHHhcCCCCceEEEEEcCCCchhhHHHHHHhccccccCCCCceEE-EEeCCCCCHHHHHHHH--
Q 002663 169 EDDEVVGIESIKDKLIDLMVNGRSKSSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAW-VTVGKEYNKNDLLRTI-- 245 (895)
Q Consensus 169 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~w-v~~~~~~~~~~l~~~i-- 245 (895)
.-++++|-+..+..+.+.+.. ........||++|.|||+-|++++...--.+.|.+++. .++|......-+-.++
T Consensus 34 t~de~~gQe~vV~~L~~a~~~--~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGisvvr~Kik~ 111 (346)
T KOG0989|consen 34 TFDELAGQEHVVQVLKNALLR--RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGISVVREKIKN 111 (346)
T ss_pred cHHhhcchHHHHHHHHHHHhh--cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccccccchhhhhcC
Confidence 346789999999999999887 34788899999999999998888874333466766543 3444443322111111
Q ss_pred HHHHHhccCC--CCCCCC-c-cCcCc-----cccHHHHHHhcCCCCCCcEEEEEcCch-hhhhhhccCCCcceeeccCCC
Q 002663 246 IKEFHRLSKH--GRDGPD-R-HAEGP-----LEGQKDVEHALLDNKKCSRIIVTTRHM-NVAKFCKSSSSVRIHELETLP 315 (895)
Q Consensus 246 ~~~l~~~~~~--~~~~~~-~-~~~~~-----L~~~~~l~~~l~~~~~gs~iivTTR~~-~v~~~~~~~~~~~~~~l~~L~ 315 (895)
..++...... ....+. . -..+. =+.|..+...+.+...-++.|..+-.- .+..-... .-..|.-++|.
T Consensus 112 fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~S--RC~KfrFk~L~ 189 (346)
T KOG0989|consen 112 FAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVS--RCQKFRFKKLK 189 (346)
T ss_pred HHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHh--hHHHhcCCCcc
Confidence 1222222110 001110 0 01111 127888888777766667766655443 22221111 11568889999
Q ss_pred hhhHHHHHHHhhcCCC
Q 002663 316 PDEAWKLFCRKAFGPS 331 (895)
Q Consensus 316 ~~es~~Lf~~~a~~~~ 331 (895)
.++...-+.+.|-...
T Consensus 190 d~~iv~rL~~Ia~~E~ 205 (346)
T KOG0989|consen 190 DEDIVDRLEKIASKEG 205 (346)
T ss_pred hHHHHHHHHHHHHHhC
Confidence 9988888877765444
No 220
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=94.93 E-value=0.017 Score=55.19 Aligned_cols=24 Identities=38% Similarity=0.495 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCchhhHHHHHHhcc
Q 002663 194 SSVVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
..+|+|-||=|+||||||+.+.++
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~ 27 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEH 27 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHH
Confidence 468999999999999999999995
No 221
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.93 E-value=0.012 Score=34.10 Aligned_cols=22 Identities=32% Similarity=0.505 Sum_probs=16.9
Q ss_pred CCcEEEcCcccccccchhhhcc
Q 002663 587 SLEILVLARTFVSELPEEIRNL 608 (895)
Q Consensus 587 ~L~~L~L~~~~l~~lp~~i~~l 608 (895)
+|++|||++|.++.+|.++++|
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT-
T ss_pred CccEEECCCCcCEeCChhhcCC
Confidence 5788999999888888876543
No 222
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=94.92 E-value=0.065 Score=54.11 Aligned_cols=60 Identities=20% Similarity=0.262 Sum_probs=41.1
Q ss_pred HHHHHHHhcCCCCceEEEEEcCCCchhhHHHHHHhccccccCCC------CceEEEEeCCCCCHHHHH
Q 002663 181 DKLIDLMVNGRSKSSVVAVVGEGGLGKTTLAGKLFNNEGLKTHF------SCRAWVTVGKEYNKNDLL 242 (895)
Q Consensus 181 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F------~~~~wv~~~~~~~~~~l~ 242 (895)
+.+.++|..+=..-.++.|+|.+|+|||++|..+... ..... ..++|++....++...+.
T Consensus 6 ~~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~--~~~~~~~~g~~~~v~yi~~e~~~~~~rl~ 71 (226)
T cd01393 6 KALDELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVE--AQLPGELGGLEGKVVYIDTEGAFRPERLV 71 (226)
T ss_pred HHHHHHhCCCCcCCcEEEEeCCCCCChhHHHHHHHHH--hhcccccCCCcceEEEEecCCCCCHHHHH
Confidence 3455555444344679999999999999999988763 22223 457898887766655443
No 223
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=94.92 E-value=0.022 Score=69.07 Aligned_cols=45 Identities=24% Similarity=0.426 Sum_probs=38.3
Q ss_pred CceeechhhHHHHHHHHhcCCCCceEEEEEcCCCchhhHHHHHHhcc
Q 002663 171 DEVVGIESIKDKLIDLMVNGRSKSSVVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
+.+|||+.++.++.+.|.... -.-+.++|.+|+|||++|+.+..+
T Consensus 173 ~~~igr~~ei~~~~~~l~r~~--~~n~lL~G~pGvGKT~l~~~la~~ 217 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRRT--KNNPVLIGEPGVGKTAIVEGLAQR 217 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcCC--CCceEEEcCCCCCHHHHHHHHHHH
Confidence 568999999999999997654 344568999999999999999885
No 224
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=94.88 E-value=0.028 Score=53.88 Aligned_cols=74 Identities=20% Similarity=0.197 Sum_probs=49.5
Q ss_pred CCCceeechhhHHHHHHHHhcCCCCceEEEEEcCCCchhhHHHHHHhccccccCCC-CceEEEEeCCCCCHHHHHHHH
Q 002663 169 EDDEVVGIESIKDKLIDLMVNGRSKSSVVAVVGEGGLGKTTLAGKLFNNEGLKTHF-SCRAWVTVGKEYNKNDLLRTI 245 (895)
Q Consensus 169 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F-~~~~wv~~~~~~~~~~l~~~i 245 (895)
.-.++||-|+.++.+.-.-.+++ ++-+.|.||+|+||||-+..+++. -....+ +.+.=.+.|.+..+.-+...|
T Consensus 25 ~l~dIVGNe~tv~rl~via~~gn--mP~liisGpPG~GKTTsi~~LAr~-LLG~~~ke~vLELNASdeRGIDvVRn~I 99 (333)
T KOG0991|consen 25 VLQDIVGNEDTVERLSVIAKEGN--MPNLIISGPPGTGKTTSILCLARE-LLGDSYKEAVLELNASDERGIDVVRNKI 99 (333)
T ss_pred HHHHhhCCHHHHHHHHHHHHcCC--CCceEeeCCCCCchhhHHHHHHHH-HhChhhhhHhhhccCccccccHHHHHHH
Confidence 34679999999999887776654 888999999999999977766663 111222 344444556555544443333
No 225
>PRK04040 adenylate kinase; Provisional
Probab=94.81 E-value=0.02 Score=55.46 Aligned_cols=23 Identities=43% Similarity=0.629 Sum_probs=21.3
Q ss_pred eEEEEEcCCCchhhHHHHHHhcc
Q 002663 195 SVVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
.+|+|+|++|+||||+++.+...
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~ 25 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEK 25 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHH
Confidence 58999999999999999999884
No 226
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=94.81 E-value=0.023 Score=52.47 Aligned_cols=35 Identities=31% Similarity=0.193 Sum_probs=27.4
Q ss_pred eEEEEEcCCCchhhHHHHHHhccccccCCCCceEEEE
Q 002663 195 SVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVT 231 (895)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~ 231 (895)
.+|-|.|.+|.||||||+++... ....-..+.+++
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~--L~~~g~~~~~LD 37 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERR--LFARGIKVYLLD 37 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHH--HHHTTS-EEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEec
Confidence 58999999999999999999984 555545555664
No 227
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=94.77 E-value=0.022 Score=55.67 Aligned_cols=25 Identities=32% Similarity=0.529 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCchhhHHHHHHhcc
Q 002663 193 KSSVVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
+.++|+|.|++|+||||+|+.+...
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~ 26 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEK 26 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3679999999999999999999863
No 228
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.75 E-value=0.045 Score=50.36 Aligned_cols=43 Identities=33% Similarity=0.402 Sum_probs=30.7
Q ss_pred EEEEcCCCchhhHHHHHHhccccccCCCCceEEEEeCCCCCHHHHHHH
Q 002663 197 VAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRT 244 (895)
Q Consensus 197 v~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~l~~~ 244 (895)
|.++|.+|+|||+||+.++.. .. ....-+.++...+..++...
T Consensus 2 vlL~G~~G~GKt~l~~~la~~--~~---~~~~~i~~~~~~~~~dl~g~ 44 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAAL--LG---RPVIRINCSSDTTEEDLIGS 44 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHH--HT---CEEEEEE-TTTSTHHHHHCE
T ss_pred EEEECCCCCCHHHHHHHHHHH--hh---cceEEEEeccccccccceee
Confidence 679999999999999999984 21 12334567777777766543
No 229
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=94.75 E-value=0.072 Score=52.68 Aligned_cols=49 Identities=33% Similarity=0.527 Sum_probs=38.5
Q ss_pred CCCCceeechhhHHHHHHHHh---cCCCCceEEEEEcCCCchhhHHHHHHhcc
Q 002663 168 VEDDEVVGIESIKDKLIDLMV---NGRSKSSVVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 168 ~~~~~~vGr~~~~~~l~~~L~---~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
+.-+.++|.|..++.|.+-.. .+ ....-|-+||..|.|||++++++.+.
T Consensus 24 ~~l~~L~Gie~Qk~~l~~Nt~~Fl~G-~pannvLL~G~rGtGKSSlVkall~~ 75 (249)
T PF05673_consen 24 IRLDDLIGIERQKEALIENTEQFLQG-LPANNVLLWGARGTGKSSLVKALLNE 75 (249)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHcC-CCCcceEEecCCCCCHHHHHHHHHHH
Confidence 455789999999988876432 22 23556788999999999999999984
No 230
>PRK03839 putative kinase; Provisional
Probab=94.72 E-value=0.021 Score=55.32 Aligned_cols=22 Identities=36% Similarity=0.650 Sum_probs=20.4
Q ss_pred EEEEEcCCCchhhHHHHHHhcc
Q 002663 196 VVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 196 vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
.|.|.|++|+||||+|+.+++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999984
No 231
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=94.61 E-value=0.1 Score=49.47 Aligned_cols=45 Identities=29% Similarity=0.395 Sum_probs=33.8
Q ss_pred eeechhhHHHHHHHHhcCCCCceEEEEEcCCCchhhHHHHHHhcc
Q 002663 173 VVGIESIKDKLIDLMVNGRSKSSVVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 173 ~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
+||.+..++++.+.+..-...-.-|-|+|-.|.||+.+|+.+++.
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~ 45 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNN 45 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHC
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHh
Confidence 478888899998888653322345679999999999999999984
No 232
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=94.61 E-value=0.024 Score=52.21 Aligned_cols=20 Identities=40% Similarity=0.640 Sum_probs=18.8
Q ss_pred EEEEEcCCCchhhHHHHHHh
Q 002663 196 VVAVVGEGGLGKTTLAGKLF 215 (895)
Q Consensus 196 vv~I~G~gGiGKTtLA~~v~ 215 (895)
.|+|.|.+|+||||+|+.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999988
No 233
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=94.60 E-value=0.067 Score=57.46 Aligned_cols=48 Identities=23% Similarity=0.378 Sum_probs=38.2
Q ss_pred CCceeechhhHHHHHHHHhcC--------C----CCceEEEEEcCCCchhhHHHHHHhcc
Q 002663 170 DDEVVGIESIKDKLIDLMVNG--------R----SKSSVVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~~--------~----~~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
+..++|.++.++.+...+... . ...+-|.++|+.|+||||+|+.+...
T Consensus 14 d~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~ 73 (443)
T PRK05201 14 DKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKL 73 (443)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHH
Confidence 456899999999998887531 0 01357899999999999999999984
No 234
>PRK00625 shikimate kinase; Provisional
Probab=94.57 E-value=0.023 Score=54.15 Aligned_cols=22 Identities=23% Similarity=0.277 Sum_probs=20.0
Q ss_pred EEEEEcCCCchhhHHHHHHhcc
Q 002663 196 VVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 196 vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
.|.++||+|+||||+|+.+.+.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~ 23 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKF 23 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999884
No 235
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=94.57 E-value=0.043 Score=53.66 Aligned_cols=50 Identities=32% Similarity=0.434 Sum_probs=39.1
Q ss_pred CCCCceeechhhHHH---HHHHHhcC----CCCceEEEEEcCCCchhhHHHHHHhcc
Q 002663 168 VEDDEVVGIESIKDK---LIDLMVNG----RSKSSVVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 168 ~~~~~~vGr~~~~~~---l~~~L~~~----~~~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
..-+++||.++.+.+ |++.|... +-..+-|..+|++|.|||.+|+++.+.
T Consensus 118 it~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane 174 (368)
T COG1223 118 ITLDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANE 174 (368)
T ss_pred ccHhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcc
Confidence 344688999988866 45555542 235689999999999999999999995
No 236
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=94.56 E-value=0.018 Score=50.00 Aligned_cols=21 Identities=38% Similarity=0.642 Sum_probs=18.3
Q ss_pred EEEEcCCCchhhHHHHHHhcc
Q 002663 197 VAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 197 v~I~G~gGiGKTtLA~~v~~~ 217 (895)
|-|+|.+|+|||++|+.+..+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~ 21 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKD 21 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999997764
No 237
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=94.56 E-value=0.02 Score=55.00 Aligned_cols=22 Identities=41% Similarity=0.424 Sum_probs=20.4
Q ss_pred EEEEEcCCCchhhHHHHHHhcc
Q 002663 196 VVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 196 vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
+|+|.|.+|.||||+|+.+...
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~ 22 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRI 22 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999984
No 238
>CHL00195 ycf46 Ycf46; Provisional
Probab=94.53 E-value=0.24 Score=55.49 Aligned_cols=48 Identities=25% Similarity=0.356 Sum_probs=35.2
Q ss_pred CCceeechhhHHHHHHHHhc--------CCCCceEEEEEcCCCchhhHHHHHHhcc
Q 002663 170 DDEVVGIESIKDKLIDLMVN--------GRSKSSVVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~--------~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
-+++.|.+..++.+.+.... +-...+-|.++|++|.|||.+|+++.+.
T Consensus 227 ~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e 282 (489)
T CHL00195 227 ISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIAND 282 (489)
T ss_pred HHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHH
Confidence 35688888777776653211 1123466899999999999999999995
No 239
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=94.53 E-value=0.021 Score=56.35 Aligned_cols=22 Identities=32% Similarity=0.688 Sum_probs=20.2
Q ss_pred EEEEEcCCCchhhHHHHHHhcc
Q 002663 196 VVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 196 vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
+|||.|..|+||||+|+.+..-
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999873
No 240
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=94.52 E-value=0.02 Score=57.16 Aligned_cols=22 Identities=27% Similarity=0.395 Sum_probs=20.3
Q ss_pred EEEEEcCCCchhhHHHHHHhcc
Q 002663 196 VVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 196 vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
+|||.|..|+||||+|+.+...
T Consensus 1 IigI~G~sGSGKTTla~~L~~~ 22 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQAL 22 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHH
Confidence 5899999999999999999974
No 241
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=94.52 E-value=0.32 Score=45.91 Aligned_cols=135 Identities=18% Similarity=0.173 Sum_probs=70.0
Q ss_pred echhhHHHHHHHHhcCCCCceEEEEEcCCCchhhHHHHHHhcccc---cc---------------CCCCceEEEEeCCC-
Q 002663 175 GIESIKDKLIDLMVNGRSKSSVVAVVGEGGLGKTTLAGKLFNNEG---LK---------------THFSCRAWVTVGKE- 235 (895)
Q Consensus 175 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~---~~---------------~~F~~~~wv~~~~~- 235 (895)
|-++..+.+.+.+..+. -.+.+.++|..|+||+|+|.++....- .. .......|+.-...
T Consensus 1 gq~~~~~~L~~~~~~~~-l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~ 79 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGR-LPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKK 79 (162)
T ss_dssp S-HHHHHHHHHHHHCTC---SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSS
T ss_pred CcHHHHHHHHHHHHcCC-cceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEeccccc
Confidence 44566677777776543 245789999999999999988776411 11 22344556654433
Q ss_pred --CCHHHHHHHHHHHHHhccCCCCCCCCc---cCcCc--cccHHHHHHhcCCCCCCcEEEEEcCchh-hhhhhccCCCcc
Q 002663 236 --YNKNDLLRTIIKEFHRLSKHGRDGPDR---HAEGP--LEGQKDVEHALLDNKKCSRIIVTTRHMN-VAKFCKSSSSVR 307 (895)
Q Consensus 236 --~~~~~l~~~i~~~l~~~~~~~~~~~~~---~~~~~--L~~~~~l~~~l~~~~~gs~iivTTR~~~-v~~~~~~~~~~~ 307 (895)
..+.++. ++...+...... ..... +..+. ...+..+...+..-..++++|++|++.. +......- ..
T Consensus 80 ~~i~i~~ir-~i~~~~~~~~~~--~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~~il~TI~SR--c~ 154 (162)
T PF13177_consen 80 KSIKIDQIR-EIIEFLSLSPSE--GKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPSKILPTIRSR--CQ 154 (162)
T ss_dssp SSBSHHHHH-HHHHHCTSS-TT--SSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GGGS-HHHHTT--SE
T ss_pred chhhHHHHH-HHHHHHHHHHhc--CCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChHHChHHHHhh--ce
Confidence 3444444 665554433111 00000 00111 2255666667777777889988888764 44433321 14
Q ss_pred eeeccCCC
Q 002663 308 IHELETLP 315 (895)
Q Consensus 308 ~~~l~~L~ 315 (895)
.+.+++++
T Consensus 155 ~i~~~~ls 162 (162)
T PF13177_consen 155 VIRFRPLS 162 (162)
T ss_dssp EEEE----
T ss_pred EEecCCCC
Confidence 66666553
No 242
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=94.50 E-value=0.072 Score=51.69 Aligned_cols=55 Identities=24% Similarity=0.294 Sum_probs=41.4
Q ss_pred CCCCceeechhhHHHHHHHHhcC-----------CCCceEEEEEcCCCchhhHHHHHHhccccccCCC
Q 002663 168 VEDDEVVGIESIKDKLIDLMVNG-----------RSKSSVVAVVGEGGLGKTTLAGKLFNNEGLKTHF 224 (895)
Q Consensus 168 ~~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F 224 (895)
+.-.++-|.|-.++++.+..... -+..+=|.++|++|.|||.||++|+++ ....|
T Consensus 152 vsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~--t~a~f 217 (408)
T KOG0727|consen 152 VSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANH--TTAAF 217 (408)
T ss_pred ccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhc--cchhe
Confidence 33456788898888888876531 134577889999999999999999995 44444
No 243
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=94.38 E-value=0.5 Score=49.94 Aligned_cols=152 Identities=13% Similarity=0.129 Sum_probs=84.9
Q ss_pred CceeechhhHHHHHHHHhcCCCCceEEEEEcCCCchhhHHHHHHhccccc-------------cCCCCceEEEEeC----
Q 002663 171 DEVVGIESIKDKLIDLMVNGRSKSSVVAVVGEGGLGKTTLAGKLFNNEGL-------------KTHFSCRAWVTVG---- 233 (895)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~-------------~~~F~~~~wv~~~---- 233 (895)
++++|-+..++.+.+.+..+. -.+..-++|+.|+||+++|.++....-- ...+....|+.-.
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~r-l~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~ 82 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNR-IAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQ 82 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEecccccc
Confidence 468999999999999997653 2378999999999999998877663110 1123334555321
Q ss_pred -CCCC-----------------HHHHHHHHHHHHHhccCCCCCCCCc---cCcCcc--ccHHHHHHhcCCCCCCcEEEEE
Q 002663 234 -KEYN-----------------KNDLLRTIIKEFHRLSKHGRDGPDR---HAEGPL--EGQKDVEHALLDNKKCSRIIVT 290 (895)
Q Consensus 234 -~~~~-----------------~~~l~~~i~~~l~~~~~~~~~~~~~---~~~~~L--~~~~~l~~~l~~~~~gs~iivT 290 (895)
...+ ..+-.++|.+.+...... ..... +..+.+ .....+...+..-.+..-|++|
T Consensus 83 g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~--~~~kVvII~~ae~m~~~aaNaLLK~LEEPp~~~fILi~ 160 (314)
T PRK07399 83 GKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLE--APRKVVVIEDAETMNEAAANALLKTLEEPGNGTLILIA 160 (314)
T ss_pred ccccchhhhhhccccccccccCcHHHHHHHHHHHccCccc--CCceEEEEEchhhcCHHHHHHHHHHHhCCCCCeEEEEE
Confidence 1000 011234444444332111 00000 001111 1344455555444433334445
Q ss_pred cCchhhhhhhccCCCcceeeccCCChhhHHHHHHHhh
Q 002663 291 TRHMNVAKFCKSSSSVRIHELETLPPDEAWKLFCRKA 327 (895)
Q Consensus 291 TR~~~v~~~~~~~~~~~~~~l~~L~~~es~~Lf~~~a 327 (895)
+....+......- ...+++.++++++..+.+....
T Consensus 161 ~~~~~Ll~TI~SR--cq~i~f~~l~~~~~~~~L~~~~ 195 (314)
T PRK07399 161 PSPESLLPTIVSR--CQIIPFYRLSDEQLEQVLKRLG 195 (314)
T ss_pred CChHhCcHHHHhh--ceEEecCCCCHHHHHHHHHHhh
Confidence 5555555544332 2789999999999999998764
No 244
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=94.35 E-value=0.037 Score=50.44 Aligned_cols=24 Identities=33% Similarity=0.502 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCchhhHHHHHHhcc
Q 002663 194 SSVVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
.++|.|+|.+|+||||+.+.+-..
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~ 27 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKE 27 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHH
Confidence 579999999999999998888773
No 245
>PLN02318 phosphoribulokinase/uridine kinase
Probab=94.31 E-value=0.048 Score=60.92 Aligned_cols=35 Identities=29% Similarity=0.421 Sum_probs=27.8
Q ss_pred HHHHHhcCCCCceEEEEEcCCCchhhHHHHHHhcc
Q 002663 183 LIDLMVNGRSKSSVVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 183 l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
..+.+....++..+|||.|..|.||||||+.+...
T Consensus 54 a~qlL~~~~~~riIIGIaGpSGSGKTTLAk~Lagl 88 (656)
T PLN02318 54 ACQLLAQKNDGIILVGVAGPSGAGKTVFTEKVLNF 88 (656)
T ss_pred HHHHHHhcCCCeEEEEEECCCCCcHHHHHHHHHhh
Confidence 34444445556789999999999999999999873
No 246
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=94.22 E-value=0.032 Score=53.98 Aligned_cols=23 Identities=35% Similarity=0.434 Sum_probs=20.8
Q ss_pred eEEEEEcCCCchhhHHHHHHhcc
Q 002663 195 SVVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
.+++|.|+.|+||||+|+.+...
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999874
No 247
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=94.21 E-value=0.29 Score=52.55 Aligned_cols=142 Identities=13% Similarity=0.078 Sum_probs=77.5
Q ss_pred ceeechhhHHHHHHHHhcCCCCceEEEEEcCCCchhhHHHHHHhccccccC-------------------CCCceEEEEe
Q 002663 172 EVVGIESIKDKLIDLMVNGRSKSSVVAVVGEGGLGKTTLAGKLFNNEGLKT-------------------HFSCRAWVTV 232 (895)
Q Consensus 172 ~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~-------------------~F~~~~wv~~ 232 (895)
.++|-+....++..+........+.+-++|+.|+||||+|.++.+...-.. ..+.+..++.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~ 81 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNP 81 (325)
T ss_pred CcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecc
Confidence 456777888888888875443445699999999999999999887421000 1234555555
Q ss_pred CCCCC---HHHHHHHHHHHHHhccCCCCCCCCccCcCcc-----ccHHHHHHhcCCCCCCcEEEEEcCc-hhhhhhhccC
Q 002663 233 GKEYN---KNDLLRTIIKEFHRLSKHGRDGPDRHAEGPL-----EGQKDVEHALLDNKKCSRIIVTTRH-MNVAKFCKSS 303 (895)
Q Consensus 233 ~~~~~---~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~L-----~~~~~l~~~l~~~~~gs~iivTTR~-~~v~~~~~~~ 303 (895)
+.... ..+..+++.+........ ........+.. +.-..+...+......+.+|++|.+ ..+......-
T Consensus 82 s~~~~~~i~~~~vr~~~~~~~~~~~~--~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~n~~~~il~tI~SR 159 (325)
T COG0470 82 SDLRKIDIIVEQVRELAEFLSESPLE--GGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILITNDPSKILPTIRSR 159 (325)
T ss_pred cccCCCcchHHHHHHHHHHhccCCCC--CCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEcCChhhccchhhhc
Confidence 55544 355566666555433211 00000111111 1223344445555567788888874 3444433221
Q ss_pred CCcceeeccCCChh
Q 002663 304 SSVRIHELETLPPD 317 (895)
Q Consensus 304 ~~~~~~~l~~L~~~ 317 (895)
...+++.+.+..
T Consensus 160 --c~~i~f~~~~~~ 171 (325)
T COG0470 160 --CQRIRFKPPSRL 171 (325)
T ss_pred --ceeeecCCchHH
Confidence 146666663333
No 248
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=94.19 E-value=0.059 Score=56.50 Aligned_cols=49 Identities=24% Similarity=0.296 Sum_probs=36.0
Q ss_pred ceEEEEEcCCCchhhHHHHHHhccccccCCCCceEEEEeCCCCCHHHHHHH
Q 002663 194 SSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRT 244 (895)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~l~~~ 244 (895)
.++|.+.|.|||||||+|-+..-. .......+.-|+....++..+++..
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~--lA~~g~kvLlvStDPAhsL~d~f~~ 50 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVK--LAESGKKVLLVSTDPAHSLGDVFDL 50 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHH--HHHcCCcEEEEEeCCCCchHhhhcc
Confidence 578999999999999999886653 3333355777777777777666554
No 249
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=94.15 E-value=0.07 Score=61.56 Aligned_cols=76 Identities=21% Similarity=0.162 Sum_probs=56.3
Q ss_pred CCceeechhhHHHHHHHHhcCCCCceEEEEEcCCCchhhHHHHHHhccccccCCCCceEEEEeCCCCCHHHHHHHHHHHH
Q 002663 170 DDEVVGIESIKDKLIDLMVNGRSKSSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRTIIKEF 249 (895)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~l~~~i~~~l 249 (895)
-+.++|.++.++.+...+... +.+.++|.+|+||||+|+.+... -....|+..+|...+ .-+...+++.++.++
T Consensus 30 ~~~vigq~~a~~~L~~~~~~~----~~~l~~G~~G~GKttla~~l~~~-l~~~~~~~~~~~~np-~~~~~~~~~~v~~~~ 103 (637)
T PRK13765 30 IDQVIGQEHAVEVIKKAAKQR----RHVMMIGSPGTGKSMLAKAMAEL-LPKEELQDILVYPNP-EDPNNPKIRTVPAGK 103 (637)
T ss_pred HHHcCChHHHHHHHHHHHHhC----CeEEEECCCCCcHHHHHHHHHHH-cChHhHHHheEeeCC-CcchHHHHHHHHHhc
Confidence 367899999999888877654 36889999999999999999984 122345777887663 346667777777655
Q ss_pred Hh
Q 002663 250 HR 251 (895)
Q Consensus 250 ~~ 251 (895)
+.
T Consensus 104 G~ 105 (637)
T PRK13765 104 GK 105 (637)
T ss_pred CH
Confidence 54
No 250
>PRK00889 adenylylsulfate kinase; Provisional
Probab=94.14 E-value=0.04 Score=53.06 Aligned_cols=24 Identities=38% Similarity=0.430 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCchhhHHHHHHhcc
Q 002663 194 SSVVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
..+|+|.|++|+||||+|+++...
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~ 27 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEK 27 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 469999999999999999999984
No 251
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=94.11 E-value=0.79 Score=48.78 Aligned_cols=129 Identities=11% Similarity=0.118 Sum_probs=71.5
Q ss_pred CceEEEEEcCCCchhhHHHHHHhcccccc-------------------CCCCceEEEEeC---CCCCHHHHHHHHHHHHH
Q 002663 193 KSSVVAVVGEGGLGKTTLAGKLFNNEGLK-------------------THFSCRAWVTVG---KEYNKNDLLRTIIKEFH 250 (895)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-------------------~~F~~~~wv~~~---~~~~~~~l~~~i~~~l~ 250 (895)
-.+.+.++|+.|+||||+|+.+....--. .......|+.-. +...+++ .+++.+.+.
T Consensus 21 ~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~-iR~l~~~~~ 99 (328)
T PRK05707 21 HPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQ-VRELVSFVV 99 (328)
T ss_pred cceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHH-HHHHHHHHh
Confidence 35678899999999999998887742110 011223444321 2233333 334555555
Q ss_pred hccCCCCCCCCc---cCcCc--cccHHHHHHhcCCCCCCcEEEEEcCch-hhhhhhccCCCcceeeccCCChhhHHHHHH
Q 002663 251 RLSKHGRDGPDR---HAEGP--LEGQKDVEHALLDNKKCSRIIVTTRHM-NVAKFCKSSSSVRIHELETLPPDEAWKLFC 324 (895)
Q Consensus 251 ~~~~~~~~~~~~---~~~~~--L~~~~~l~~~l~~~~~gs~iivTTR~~-~v~~~~~~~~~~~~~~l~~L~~~es~~Lf~ 324 (895)
..... ..... +..+. ....+.+...+..-..++.+|+||.+. .+......- ...+.+.+++.+++.+.+.
T Consensus 100 ~~~~~--~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SR--c~~~~~~~~~~~~~~~~L~ 175 (328)
T PRK05707 100 QTAQL--GGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSR--CQQQACPLPSNEESLQWLQ 175 (328)
T ss_pred hcccc--CCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhh--ceeeeCCCcCHHHHHHHHH
Confidence 43211 10100 11111 124455555555555567777777765 444333321 2689999999999998887
Q ss_pred Hh
Q 002663 325 RK 326 (895)
Q Consensus 325 ~~ 326 (895)
..
T Consensus 176 ~~ 177 (328)
T PRK05707 176 QA 177 (328)
T ss_pred Hh
Confidence 65
No 252
>PRK00131 aroK shikimate kinase; Reviewed
Probab=94.11 E-value=0.036 Score=53.32 Aligned_cols=24 Identities=25% Similarity=0.391 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCchhhHHHHHHhcc
Q 002663 194 SSVVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
...|.|+|++|+||||+|+++...
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~ 27 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKR 27 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHH
Confidence 358999999999999999999984
No 253
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.07 E-value=0.73 Score=49.13 Aligned_cols=38 Identities=26% Similarity=0.376 Sum_probs=27.1
Q ss_pred ceEEEEEcCCCchhhHHHHHHhccccccCCCCceEEEEeC
Q 002663 194 SSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVG 233 (895)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~ 233 (895)
.++|+|+|+.|+||||++..++.. ...+-..+.+|+..
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~~--l~~~g~~V~lItaD 243 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGWQ--LLKQNRTVGFITTD 243 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEeCC
Confidence 579999999999999999888764 22222345566543
No 254
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.07 E-value=0.33 Score=56.11 Aligned_cols=156 Identities=13% Similarity=0.155 Sum_probs=80.9
Q ss_pred CCCceeechhhHHHHHHHHh---cC-------CCCceEEEEEcCCCchhhHHHHHHhccccccCCCCceEEEEeCCC-CC
Q 002663 169 EDDEVVGIESIKDKLIDLMV---NG-------RSKSSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKE-YN 237 (895)
Q Consensus 169 ~~~~~vGr~~~~~~l~~~L~---~~-------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~-~~ 237 (895)
.-.++.|.|+..++|.+... .. ..-.+=|-++|++|.|||-|||+++....+ - |++++.. |-
T Consensus 309 ~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgV--P-----F~svSGSEFv 381 (774)
T KOG0731|consen 309 KFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGV--P-----FFSVSGSEFV 381 (774)
T ss_pred ccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCC--c-----eeeechHHHH
Confidence 34578899888777666543 22 122455889999999999999999985322 2 3333221 10
Q ss_pred H------HHHHHHHHHHHHhccCC---CCCCCCc---c--------CcCccccHHHHHHhcCCCCCCcEEEE--EcCchh
Q 002663 238 K------NDLLRTIIKEFHRLSKH---GRDGPDR---H--------AEGPLEGQKDVEHALLDNKKCSRIIV--TTRHMN 295 (895)
Q Consensus 238 ~------~~l~~~i~~~l~~~~~~---~~~~~~~---~--------~~~~L~~~~~l~~~l~~~~~gs~iiv--TTR~~~ 295 (895)
. ..-.+++.......... .+..... . ..+.-....++...+.+...++.||| +|+..+
T Consensus 382 E~~~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d 461 (774)
T KOG0731|consen 382 EMFVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPD 461 (774)
T ss_pred HHhcccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCcc
Confidence 0 11112222211110000 0000000 0 00011133333333333333333433 566666
Q ss_pred hhhh--hccCCCcceeeccCCChhhHHHHHHHhhcCCC
Q 002663 296 VAKF--CKSSSSVRIHELETLPPDEAWKLFCRKAFGPS 331 (895)
Q Consensus 296 v~~~--~~~~~~~~~~~l~~L~~~es~~Lf~~~a~~~~ 331 (895)
+.+. +....-++.+.++.-+.....++|..|+-...
T Consensus 462 ~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~ 499 (774)
T KOG0731|consen 462 ILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKK 499 (774)
T ss_pred ccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccC
Confidence 6543 33444457888999999999999999986554
No 255
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=94.02 E-value=0.12 Score=60.02 Aligned_cols=76 Identities=20% Similarity=0.156 Sum_probs=52.6
Q ss_pred CCceeechhhHHHHHHHHhcCCCCceEEEEEcCCCchhhHHHHHHhccccccC-CCCceEEEEeCCCCCHHHHHHHHHHH
Q 002663 170 DDEVVGIESIKDKLIDLMVNGRSKSSVVAVVGEGGLGKTTLAGKLFNNEGLKT-HFSCRAWVTVGKEYNKNDLLRTIIKE 248 (895)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~-~F~~~~wv~~~~~~~~~~l~~~i~~~ 248 (895)
-++++|.++.++.+...+.... -+.++|++|+||||+|+++.+. +.. .|...+++..+. .+..++++.++.+
T Consensus 17 ~~~viG~~~a~~~l~~a~~~~~----~~ll~G~pG~GKT~la~~la~~--l~~~~~~~~~~~~n~~-~~~~~~~~~v~~~ 89 (608)
T TIGR00764 17 IDQVIGQEEAVEIIKKAAKQKR----NVLLIGEPGVGKSMLAKAMAEL--LPDEELEDILVYPNPE-DPNMPRIVEVPAG 89 (608)
T ss_pred HhhccCHHHHHHHHHHHHHcCC----CEEEECCCCCCHHHHHHHHHHH--cCchhheeEEEEeCCC-CCchHHHHHHHHh
Confidence 4678999999888888776542 4559999999999999999984 433 344444443332 3455667777776
Q ss_pred HHhc
Q 002663 249 FHRL 252 (895)
Q Consensus 249 l~~~ 252 (895)
++..
T Consensus 90 ~g~~ 93 (608)
T TIGR00764 90 EGRE 93 (608)
T ss_pred hchH
Confidence 6543
No 256
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=94.01 E-value=0.032 Score=53.71 Aligned_cols=22 Identities=55% Similarity=0.735 Sum_probs=20.3
Q ss_pred EEEEEcCCCchhhHHHHHHhcc
Q 002663 196 VVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 196 vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
+|+|.|..|+||||+|+.+...
T Consensus 1 ii~i~G~sgsGKttla~~l~~~ 22 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQ 22 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999974
No 257
>PRK10536 hypothetical protein; Provisional
Probab=94.01 E-value=0.092 Score=52.63 Aligned_cols=52 Identities=12% Similarity=0.222 Sum_probs=39.2
Q ss_pred CceeechhhHHHHHHHHhcCCCCceEEEEEcCCCchhhHHHHHHhccccccCCCCc
Q 002663 171 DEVVGIESIKDKLIDLMVNGRSKSSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSC 226 (895)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~ 226 (895)
..+.++......+..+|.. ..+|.+.|..|.|||+||.++..+.-..+.|+.
T Consensus 55 ~~i~p~n~~Q~~~l~al~~----~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~k 106 (262)
T PRK10536 55 SPILARNEAQAHYLKAIES----KQLIFATGEAGCGKTWISAAKAAEALIHKDVDR 106 (262)
T ss_pred ccccCCCHHHHHHHHHHhc----CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeE
Confidence 4467788888888888865 249999999999999999998875222344444
No 258
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=93.99 E-value=0.039 Score=53.46 Aligned_cols=23 Identities=30% Similarity=0.640 Sum_probs=21.3
Q ss_pred eEEEEEcCCCchhhHHHHHHhcc
Q 002663 195 SVVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
++|+|+|+.|+||||||+.+...
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHcc
Confidence 58999999999999999999983
No 259
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=93.97 E-value=0.032 Score=54.25 Aligned_cols=22 Identities=45% Similarity=0.604 Sum_probs=20.2
Q ss_pred EEEEEcCCCchhhHHHHHHhcc
Q 002663 196 VVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 196 vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
+|.|+|++|+||||+|+.+...
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~ 22 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVEN 22 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999884
No 260
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=93.95 E-value=0.038 Score=53.19 Aligned_cols=23 Identities=22% Similarity=0.391 Sum_probs=21.3
Q ss_pred eEEEEEcCCCchhhHHHHHHhcc
Q 002663 195 SVVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
++|.+.|++|+||||+|+++...
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~ 25 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSV 25 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 58999999999999999999874
No 261
>PRK12377 putative replication protein; Provisional
Probab=93.92 E-value=0.054 Score=54.78 Aligned_cols=38 Identities=29% Similarity=0.252 Sum_probs=29.2
Q ss_pred ceEEEEEcCCCchhhHHHHHHhccccccCCCCceEEEEeC
Q 002663 194 SSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVG 233 (895)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~ 233 (895)
...+.|+|..|+|||+||.++.+. .......++++++.
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~--l~~~g~~v~~i~~~ 138 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNR--LLAKGRSVIVVTVP 138 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEEEHH
Confidence 467899999999999999999995 44444455676543
No 262
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=93.90 E-value=0.036 Score=50.30 Aligned_cols=43 Identities=28% Similarity=0.420 Sum_probs=30.7
Q ss_pred EEEEEcCCCchhhHHHHHHhccccccCCCCceEEEEeCCCCCHHHHHHHHHHHHHh
Q 002663 196 VVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRTIIKEFHR 251 (895)
Q Consensus 196 vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~l~~~i~~~l~~ 251 (895)
+|.|-|++|.||||+|+.+.++ ..-.| .+...+.+++++..+.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~--~gl~~-----------vsaG~iFR~~A~e~gm 44 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEH--LGLKL-----------VSAGTIFREMARERGM 44 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHH--hCCce-----------eeccHHHHHHHHHcCC
Confidence 6899999999999999999985 22111 1233567777776554
No 263
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=93.90 E-value=0.035 Score=51.86 Aligned_cols=22 Identities=32% Similarity=0.582 Sum_probs=19.8
Q ss_pred EEEEEcCCCchhhHHHHHHhcc
Q 002663 196 VVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 196 vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
+|.|+|++|+||||+|+.+...
T Consensus 1 li~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhh
Confidence 4789999999999999999884
No 264
>PRK05439 pantothenate kinase; Provisional
Probab=93.83 E-value=0.082 Score=55.14 Aligned_cols=25 Identities=24% Similarity=0.330 Sum_probs=22.5
Q ss_pred CCceEEEEEcCCCchhhHHHHHHhc
Q 002663 192 SKSSVVAVVGEGGLGKTTLAGKLFN 216 (895)
Q Consensus 192 ~~~~vv~I~G~gGiGKTtLA~~v~~ 216 (895)
...-+|||.|.+|+||||+|+.+..
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~ 108 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQA 108 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4567999999999999999998887
No 265
>PRK06217 hypothetical protein; Validated
Probab=93.82 E-value=0.039 Score=53.54 Aligned_cols=22 Identities=32% Similarity=0.518 Sum_probs=20.5
Q ss_pred EEEEEcCCCchhhHHHHHHhcc
Q 002663 196 VVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 196 vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
.|.|.|.+|.||||+|+++...
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999985
No 266
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=93.82 E-value=0.075 Score=53.58 Aligned_cols=63 Identities=19% Similarity=0.243 Sum_probs=39.7
Q ss_pred HHHHHHHhcCCCCceEEEEEcCCCchhhHHHHHHhccccccCCCCceEEEEeCCCCCHHHHHH
Q 002663 181 DKLIDLMVNGRSKSSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLR 243 (895)
Q Consensus 181 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~l~~ 243 (895)
.++...+.....+..+|||.|.||+||+||.-++-.......+=-.++=|+-|..++--.++.
T Consensus 38 ~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLG 100 (323)
T COG1703 38 RELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILG 100 (323)
T ss_pred HHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccc
Confidence 456666665566788999999999999999988776422222212233444455555444443
No 267
>PRK13947 shikimate kinase; Provisional
Probab=93.77 E-value=0.04 Score=52.84 Aligned_cols=22 Identities=27% Similarity=0.449 Sum_probs=20.2
Q ss_pred EEEEEcCCCchhhHHHHHHhcc
Q 002663 196 VVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 196 vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
-|.|+|++|+||||+|+.+.+.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~ 24 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATT 24 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHH
Confidence 4899999999999999999984
No 268
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=93.76 E-value=0.15 Score=51.75 Aligned_cols=62 Identities=16% Similarity=0.227 Sum_probs=41.8
Q ss_pred HHHHHHHHhcCCCCceEEEEEcCCCchhhHHHHHHhccccccCCCCceEEEEeCCCCCHHHHHHHH
Q 002663 180 KDKLIDLMVNGRSKSSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRTI 245 (895)
Q Consensus 180 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~l~~~i 245 (895)
++.+.++|..+=+.-.++.|.|.+|.|||++|.++... ....-..++||+... ++.++.+.+
T Consensus 7 i~~LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~--~~~~ge~~lyvs~ee--~~~~i~~~~ 68 (237)
T TIGR03877 7 IPGMDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWN--GLQMGEPGIYVALEE--HPVQVRRNM 68 (237)
T ss_pred cHhHHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHH--HHHcCCcEEEEEeeC--CHHHHHHHH
Confidence 34455556544345679999999999999999876552 223456788888654 455555553
No 269
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.76 E-value=0.072 Score=53.97 Aligned_cols=39 Identities=18% Similarity=0.347 Sum_probs=30.8
Q ss_pred ceEEEEEcCCCchhhHHHHHHhccccc--cCCCCceEEEEe
Q 002663 194 SSVVAVVGEGGLGKTTLAGKLFNNEGL--KTHFSCRAWVTV 232 (895)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~--~~~F~~~~wv~~ 232 (895)
-|+|.++|++|.|||+|+|++++...+ .+.|....-+.+
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEi 217 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEI 217 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEE
Confidence 379999999999999999999997544 456666566654
No 270
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=93.70 E-value=0.039 Score=51.29 Aligned_cols=22 Identities=36% Similarity=0.576 Sum_probs=20.2
Q ss_pred EEEEEcCCCchhhHHHHHHhcc
Q 002663 196 VVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 196 vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
+|.|.|..|+||||+|+.+...
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~ 22 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKK 22 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999974
No 271
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=93.69 E-value=0.058 Score=50.94 Aligned_cols=25 Identities=36% Similarity=0.425 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCchhhHHHHHHhcc
Q 002663 193 KSSVVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
...+++|+|..|+|||||++.+...
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHH
Confidence 3579999999999999999999974
No 272
>PRK14738 gmk guanylate kinase; Provisional
Probab=93.69 E-value=0.054 Score=53.62 Aligned_cols=28 Identities=21% Similarity=0.452 Sum_probs=23.7
Q ss_pred CCCCceEEEEEcCCCchhhHHHHHHhcc
Q 002663 190 GRSKSSVVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 190 ~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
.....+.|.|+|+.|+|||||++.+...
T Consensus 9 ~~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 9 KPAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 3445689999999999999999999863
No 273
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=93.67 E-value=0.15 Score=52.58 Aligned_cols=56 Identities=23% Similarity=0.316 Sum_probs=34.9
Q ss_pred hhHHHHHHHHhcCCCCceEEEEEcCCCchhhHHHHHHhccccccCCCCceEEEEeCCCCCHHHHH
Q 002663 178 SIKDKLIDLMVNGRSKSSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLL 242 (895)
Q Consensus 178 ~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~l~ 242 (895)
..++++..++..+ +-|-++|.+|+|||++|+++... ... ..++++.....+..+++
T Consensus 9 ~l~~~~l~~l~~g----~~vLL~G~~GtGKT~lA~~la~~--lg~---~~~~i~~~~~~~~~dll 64 (262)
T TIGR02640 9 RVTSRALRYLKSG----YPVHLRGPAGTGKTTLAMHVARK--RDR---PVMLINGDAELTTSDLV 64 (262)
T ss_pred HHHHHHHHHHhcC----CeEEEEcCCCCCHHHHHHHHHHH--hCC---CEEEEeCCccCCHHHHh
Confidence 3345555555443 35669999999999999999972 322 23455555555544443
No 274
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=93.67 E-value=0.2 Score=53.34 Aligned_cols=63 Identities=21% Similarity=0.310 Sum_probs=43.0
Q ss_pred HHHHHHhcCCCCceEEEEEcCCCchhhHHHHHHhccccccC----CCCceEEEEeCCCCCHHHHHHH
Q 002663 182 KLIDLMVNGRSKSSVVAVVGEGGLGKTTLAGKLFNNEGLKT----HFSCRAWVTVGKEYNKNDLLRT 244 (895)
Q Consensus 182 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~----~F~~~~wv~~~~~~~~~~l~~~ 244 (895)
.+..+|..+=+.-.++-|+|.+|+||||+|.+++....... .=..++||+....++...+.+.
T Consensus 83 ~lD~~l~GGi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~~~ 149 (310)
T TIGR02236 83 ELDELLGGGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQM 149 (310)
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHHHH
Confidence 34455543323467999999999999999988876422211 1126889999888888766543
No 275
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=93.66 E-value=0.17 Score=53.94 Aligned_cols=64 Identities=20% Similarity=0.270 Sum_probs=43.6
Q ss_pred HHHHHHHhcCCCCceEEEEEcCCCchhhHHHHHHhccccccCC----CCceEEEEeCCCCCHHHHHHH
Q 002663 181 DKLIDLMVNGRSKSSVVAVVGEGGLGKTTLAGKLFNNEGLKTH----FSCRAWVTVGKEYNKNDLLRT 244 (895)
Q Consensus 181 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~----F~~~~wv~~~~~~~~~~l~~~ 244 (895)
..+.++|..+=+.-.++-|+|.+|+|||++|.+++........ =..++||+....+++..+.+.
T Consensus 89 ~~lD~~l~GGi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~~ 156 (317)
T PRK04301 89 KELDELLGGGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQM 156 (317)
T ss_pred HHHHHHhcCCccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHHH
Confidence 3444555433344679999999999999999888764222111 146889999888888776543
No 276
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=93.62 E-value=0.052 Score=49.69 Aligned_cols=38 Identities=39% Similarity=0.474 Sum_probs=26.4
Q ss_pred eEEEEEcCCCchhhHHHHHHhcccccc-CCCCceEEEEeCC
Q 002663 195 SVVAVVGEGGLGKTTLAGKLFNNEGLK-THFSCRAWVTVGK 234 (895)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~~~~~-~~F~~~~wv~~~~ 234 (895)
++|+|+|..|+|||||++.+.+. .. ..+...++.+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~--l~~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINE--LKRRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHH--HHHTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHH--HhHcCCceEEEEEccC
Confidence 48999999999999999999995 33 3444444555444
No 277
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=93.60 E-value=1.3 Score=43.52 Aligned_cols=47 Identities=21% Similarity=0.293 Sum_probs=37.4
Q ss_pred CceeechhhHHHHHHHHhcC-----------CCCceEEEEEcCCCchhhHHHHHHhcc
Q 002663 171 DEVVGIESIKDKLIDLMVNG-----------RSKSSVVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
+++-|.|..++++++.+... -...+=|..||++|.|||-+|++.+..
T Consensus 171 sDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaq 228 (424)
T KOG0652|consen 171 SDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQ 228 (424)
T ss_pred cccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHh
Confidence 56789999999999887532 112456889999999999999999873
No 278
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=93.59 E-value=0.15 Score=54.74 Aligned_cols=68 Identities=28% Similarity=0.274 Sum_probs=50.3
Q ss_pred CceeechhhHHHHHHHHhcCCCCceEEEEEcCCCchhhHHHHHHhccccccCCCCceEEEEeCCCCCHHHHHHHHHH
Q 002663 171 DEVVGIESIKDKLIDLMVNGRSKSSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRTIIK 247 (895)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~l~~~i~~ 247 (895)
..++|.++.+..+...+..+. -+-+.|.+|+|||+||+.+... .. -..++|.+.......++.....-
T Consensus 24 ~~~~g~~~~~~~~l~a~~~~~----~vll~G~PG~gKT~la~~lA~~--l~---~~~~~i~~t~~l~p~d~~G~~~~ 91 (329)
T COG0714 24 KVVVGDEEVIELALLALLAGG----HVLLEGPPGVGKTLLARALARA--LG---LPFVRIQCTPDLLPSDLLGTYAY 91 (329)
T ss_pred CeeeccHHHHHHHHHHHHcCC----CEEEECCCCccHHHHHHHHHHH--hC---CCeEEEecCCCCCHHHhcCchhH
Confidence 348898888888877776643 6789999999999999999984 33 23356677777777776554443
No 279
>PRK07952 DNA replication protein DnaC; Validated
Probab=93.56 E-value=0.089 Score=53.10 Aligned_cols=51 Identities=22% Similarity=0.177 Sum_probs=33.6
Q ss_pred HHHHHHHHhcCCCCceEEEEEcCCCchhhHHHHHHhccccccCCCCceEEEEe
Q 002663 180 KDKLIDLMVNGRSKSSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTV 232 (895)
Q Consensus 180 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~ 232 (895)
+..+.++...-..+...+.++|.+|+|||+||.++++. ....-..++++++
T Consensus 85 l~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~--l~~~g~~v~~it~ 135 (244)
T PRK07952 85 LSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNE--LLLRGKSVLIITV 135 (244)
T ss_pred HHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEEH
Confidence 44444444332233457899999999999999999995 3333345566643
No 280
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=93.56 E-value=0.073 Score=56.52 Aligned_cols=23 Identities=48% Similarity=0.612 Sum_probs=20.2
Q ss_pred ceEEEEEcCCCchhhH-HHHHHhc
Q 002663 194 SSVVAVVGEGGLGKTT-LAGKLFN 216 (895)
Q Consensus 194 ~~vv~I~G~gGiGKTt-LA~~v~~ 216 (895)
-++|.++|+.|||||| |||..+.
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar 226 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAAR 226 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHH
Confidence 6899999999999995 8877776
No 281
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=93.55 E-value=0.11 Score=50.70 Aligned_cols=56 Identities=29% Similarity=0.281 Sum_probs=34.9
Q ss_pred eEEEEEcCCCchhhHHHHHHhccccccCCCCceEEEEeCCC-CCHHHHHHHHHHHHHhc
Q 002663 195 SVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKE-YNKNDLLRTIIKEFHRL 252 (895)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~-~~~~~l~~~i~~~l~~~ 252 (895)
++|.++|+.|+||||.+-+++.. ...+-..+..++.... ....+-++..++.++..
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~--~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp 58 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAAR--LKLKGKKVALISADTYRIGAVEQLKTYAEILGVP 58 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH--HHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEE
T ss_pred EEEEEECCCCCchHhHHHHHHHH--HhhccccceeecCCCCCccHHHHHHHHHHHhccc
Confidence 68999999999999876666653 2322344556665332 23445566666666654
No 282
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=93.53 E-value=0.078 Score=52.74 Aligned_cols=39 Identities=23% Similarity=0.420 Sum_probs=28.3
Q ss_pred hHHHHHHHHhcCCCCceEEEEEcCCCchhhHHHHHHhcc
Q 002663 179 IKDKLIDLMVNGRSKSSVVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 179 ~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
...++.+.+.....+..+|||.|+||+||+||.-++...
T Consensus 14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~ 52 (266)
T PF03308_consen 14 EARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRE 52 (266)
T ss_dssp HHHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHH
Confidence 344555555554456789999999999999999888774
No 283
>PRK13949 shikimate kinase; Provisional
Probab=93.53 E-value=0.051 Score=51.76 Aligned_cols=23 Identities=39% Similarity=0.459 Sum_probs=20.7
Q ss_pred eEEEEEcCCCchhhHHHHHHhcc
Q 002663 195 SVVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
+-|.|+|++|.||||+|+.+...
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~ 24 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARE 24 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999999984
No 284
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=93.50 E-value=0.098 Score=54.06 Aligned_cols=58 Identities=22% Similarity=0.307 Sum_probs=41.1
Q ss_pred HHHhcCCCCceEEEEEcCCCchhhHHHHHHhccccccCCCCceEEEEeCCCCCHHHHHHHHH
Q 002663 185 DLMVNGRSKSSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRTII 246 (895)
Q Consensus 185 ~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~l~~~i~ 246 (895)
+.|..+=+.-+++.|+|.+|+|||++|.++... ....+..++||+.... ..++.+...
T Consensus 14 ~~l~GG~p~g~~~lI~G~pGsGKT~f~~qfl~~--~~~~ge~vlyvs~~e~--~~~l~~~~~ 71 (260)
T COG0467 14 EILGGGLPRGSVVLITGPPGTGKTIFALQFLYE--GAREGEPVLYVSTEES--PEELLENAR 71 (260)
T ss_pred HHhcCCCcCCcEEEEEcCCCCcHHHHHHHHHHH--HHhcCCcEEEEEecCC--HHHHHHHHH
Confidence 333333345689999999999999999888773 5555888999988754 344444443
No 285
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.49 E-value=0.083 Score=56.21 Aligned_cols=25 Identities=32% Similarity=0.505 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCchhhHHHHHHhcc
Q 002663 193 KSSVVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
..++|+|+|++|+||||++..++..
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~ 264 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQ 264 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHH
Confidence 3579999999999999999888863
No 286
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=93.48 E-value=0.038 Score=50.70 Aligned_cols=44 Identities=32% Similarity=0.338 Sum_probs=33.0
Q ss_pred eechhhHHHHHHHHhcCCCCceEEEEEcCCCchhhHHHHHHhcc
Q 002663 174 VGIESIKDKLIDLMVNGRSKSSVVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 174 vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
||....++++.+.+..-.....-|.|+|..|+||+++|+.++..
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~ 44 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRY 44 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHT
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhh
Confidence 57777888888877643333457799999999999999999985
No 287
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=93.45 E-value=0.061 Score=55.66 Aligned_cols=23 Identities=26% Similarity=0.403 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCchhhHHHHHHhc
Q 002663 194 SSVVAVVGEGGLGKTTLAGKLFN 216 (895)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~ 216 (895)
..+|||.|..|+||||+|+.+..
T Consensus 62 p~IIGIaG~~GSGKSTlar~L~~ 84 (290)
T TIGR00554 62 PYIISIAGSVAVGKSTTARILQA 84 (290)
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 56999999999999999987755
No 288
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=93.41 E-value=0.092 Score=51.42 Aligned_cols=23 Identities=43% Similarity=0.634 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCchhhHHHHHHhc
Q 002663 194 SSVVAVVGEGGLGKTTLAGKLFN 216 (895)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~ 216 (895)
-.++||+|..|.||||||+.+..
T Consensus 33 Ge~lgivGeSGsGKSTL~r~l~G 55 (252)
T COG1124 33 GETLGIVGESGSGKSTLARLLAG 55 (252)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhc
Confidence 45899999999999999999998
No 289
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=93.41 E-value=0.12 Score=53.44 Aligned_cols=38 Identities=37% Similarity=0.409 Sum_probs=26.9
Q ss_pred CceEEEEEcCCCchhhHHHHHHhccccccCCCCceEEEEe
Q 002663 193 KSSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTV 232 (895)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~ 232 (895)
+.++|+++|++|+||||.+..++.. ....-..+.+++.
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~--l~~~g~~V~li~~ 108 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANK--LKKQGKSVLLAAG 108 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH--HHhcCCEEEEEeC
Confidence 4689999999999999988888763 3333234445543
No 290
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=93.40 E-value=0.92 Score=44.27 Aligned_cols=147 Identities=13% Similarity=0.195 Sum_probs=79.2
Q ss_pred eeechhhHHHHHHHHhcC-----------CCCceEEEEEcCCCchhhHHHHHHhccccccCCCCceEEEEeCCCCCHHHH
Q 002663 173 VVGIESIKDKLIDLMVNG-----------RSKSSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDL 241 (895)
Q Consensus 173 ~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~l 241 (895)
+-|.|..+++|.+.+... -...+=|.++|++|.|||-||++|+++ .++-|+.||..--+.+.
T Consensus 149 iGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahh-------t~c~firvsgselvqk~ 221 (404)
T KOG0728|consen 149 IGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHH-------TDCTFIRVSGSELVQKY 221 (404)
T ss_pred hccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhh-------cceEEEEechHHHHHHH
Confidence 345788888888877642 123567889999999999999999984 23345666654222211
Q ss_pred H---HHHHHHHHhccCCCCCCCCc---cC-----cCccc-----------cHHHHHHhcCCC--CCCcEEEEEcCchhhh
Q 002663 242 L---RTIIKEFHRLSKHGRDGPDR---HA-----EGPLE-----------GQKDVEHALLDN--KKCSRIIVTTRHMNVA 297 (895)
Q Consensus 242 ~---~~i~~~l~~~~~~~~~~~~~---~~-----~~~L~-----------~~~~l~~~l~~~--~~gs~iivTTR~~~v~ 297 (895)
. ..+.+++..-..+ ..+.. +. ....+ ..-.+...+.+. .+.-+||+.|..-++.
T Consensus 222 igegsrmvrelfvmare--hapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridil 299 (404)
T KOG0728|consen 222 IGEGSRMVRELFVMARE--HAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDIL 299 (404)
T ss_pred hhhhHHHHHHHHHHHHh--cCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEeccccccc
Confidence 1 1222222221111 00000 00 00000 001111122221 2356888888766665
Q ss_pred hh--hccCCCcceeeccCCChhhHHHHHHHhhc
Q 002663 298 KF--CKSSSSVRIHELETLPPDEAWKLFCRKAF 328 (895)
Q Consensus 298 ~~--~~~~~~~~~~~l~~L~~~es~~Lf~~~a~ 328 (895)
+. ..+...++.++.++.+++.-.++++-+.-
T Consensus 300 d~allrpgridrkiefp~p~e~ar~~ilkihsr 332 (404)
T KOG0728|consen 300 DPALLRPGRIDRKIEFPPPNEEARLDILKIHSR 332 (404)
T ss_pred cHhhcCCCcccccccCCCCCHHHHHHHHHHhhh
Confidence 43 33344456788888888887888876643
No 291
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=93.40 E-value=0.11 Score=50.17 Aligned_cols=42 Identities=31% Similarity=0.401 Sum_probs=32.1
Q ss_pred CceeechhhHHHHHHHHhcCCCCceEEEEEcCCCchhhHHHHHHhc
Q 002663 171 DEVVGIESIKDKLIDLMVNGRSKSSVVAVVGEGGLGKTTLAGKLFN 216 (895)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 216 (895)
.+++|-+..+..+.-.... .+-|.++|.+|+|||++|+.+-.
T Consensus 3 ~dI~GQe~aKrAL~iAAaG----~h~lLl~GppGtGKTmlA~~l~~ 44 (206)
T PF01078_consen 3 SDIVGQEEAKRALEIAAAG----GHHLLLIGPPGTGKTMLARRLPS 44 (206)
T ss_dssp CCSSSTHHHHHHHHHHHHC----C--EEEES-CCCTHHHHHHHHHH
T ss_pred hhhcCcHHHHHHHHHHHcC----CCCeEEECCCCCCHHHHHHHHHH
Confidence 5678888888777766553 35789999999999999999886
No 292
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=93.40 E-value=0.18 Score=51.53 Aligned_cols=59 Identities=20% Similarity=0.252 Sum_probs=44.4
Q ss_pred HHHHHhcCCCCceEEEEEcCCCchhhHHHHHHhccccccCCCCceEEEEeCCCCCHHHHHH
Q 002663 183 LIDLMVNGRSKSSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLR 243 (895)
Q Consensus 183 l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~l~~ 243 (895)
+.+.|..+=+.-+++=|+|+.|.||||+|.+++-. .+..-..++|++....+++..+..
T Consensus 49 LD~~LGGGl~~g~ItEiyG~~gsGKT~lal~~~~~--aq~~g~~a~fIDtE~~l~p~r~~~ 107 (279)
T COG0468 49 LDEALGGGLPRGRITEIYGPESSGKTTLALQLVAN--AQKPGGKAAFIDTEHALDPERAKQ 107 (279)
T ss_pred HHHHhcCCcccceEEEEecCCCcchhhHHHHHHHH--hhcCCCeEEEEeCCCCCCHHHHHH
Confidence 34445433355689999999999999999887763 555555889999999888876543
No 293
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=93.36 E-value=0.12 Score=54.14 Aligned_cols=56 Identities=18% Similarity=0.196 Sum_probs=38.5
Q ss_pred HHHHHHHh-cCCCCceEEEEEcCCCchhhHHHHHHhccccccCCCCceEEEEeCCCCCH
Q 002663 181 DKLIDLMV-NGRSKSSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNK 238 (895)
Q Consensus 181 ~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~ 238 (895)
..+..+|. .+=+.-+++-|+|++|+||||||.++... ....-..++||+....++.
T Consensus 41 ~~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~--~~~~g~~v~yId~E~~~~~ 97 (321)
T TIGR02012 41 LSLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDP 97 (321)
T ss_pred HHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEcccchhHH
Confidence 44555554 33345679999999999999999887763 3334455678877665554
No 294
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=93.35 E-value=0.065 Score=52.27 Aligned_cols=24 Identities=29% Similarity=0.517 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCchhhHHHHHHhcc
Q 002663 194 SSVVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
..+|.|.|++|+||||+|+.+...
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~ 26 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARH 26 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999984
No 295
>PRK08181 transposase; Validated
Probab=93.35 E-value=0.6 Score=47.96 Aligned_cols=36 Identities=19% Similarity=0.117 Sum_probs=26.8
Q ss_pred eEEEEEcCCCchhhHHHHHHhccccccCCCCceEEEEe
Q 002663 195 SVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTV 232 (895)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~ 232 (895)
.-|.++|++|+|||.||.++.+. .......++|+.+
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~--a~~~g~~v~f~~~ 142 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLA--LIENGWRVLFTRT 142 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHH--HHHcCCceeeeeH
Confidence 45899999999999999999984 3333344556653
No 296
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=93.34 E-value=0.18 Score=53.07 Aligned_cols=69 Identities=22% Similarity=0.263 Sum_probs=46.7
Q ss_pred HHHHHHHHhcCCCCceEEEEEcCCCchhhHHHHHHhcccccc----CCCCceEEEEeCCCCCHHHHHHHHHHHH
Q 002663 180 KDKLIDLMVNGRSKSSVVAVVGEGGLGKTTLAGKLFNNEGLK----THFSCRAWVTVGKEYNKNDLLRTIIKEF 249 (895)
Q Consensus 180 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~----~~F~~~~wv~~~~~~~~~~l~~~i~~~l 249 (895)
.+.+.++|..+=+.-+++-|+|.+|+|||+||..++-..... ..=..++||+....|+++.+.+ +++.+
T Consensus 82 ~~~LD~lLgGGi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~-~a~~~ 154 (313)
T TIGR02238 82 SQALDGILGGGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRA-IAERF 154 (313)
T ss_pred CHHHHHHhCCCCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHH-HHHHc
Confidence 345556665443446799999999999999998776432221 1224688999988888887754 34443
No 297
>PRK00300 gmk guanylate kinase; Provisional
Probab=93.33 E-value=0.056 Score=53.65 Aligned_cols=24 Identities=29% Similarity=0.551 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCchhhHHHHHHhcc
Q 002663 194 SSVVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
..+|+|+|+.|+||||||+.+...
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 468999999999999999999984
No 298
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=93.32 E-value=0.12 Score=54.29 Aligned_cols=56 Identities=20% Similarity=0.188 Sum_probs=39.4
Q ss_pred HHHHHHHh-cCCCCceEEEEEcCCCchhhHHHHHHhccccccCCCCceEEEEeCCCCCH
Q 002663 181 DKLIDLMV-NGRSKSSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNK 238 (895)
Q Consensus 181 ~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~ 238 (895)
..+..+|. .+=+.-+++-|+|++|+||||||.+++.. ....-..++||+....+++
T Consensus 41 ~~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~--~~~~g~~~vyId~E~~~~~ 97 (325)
T cd00983 41 LSLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAE--AQKLGGTVAFIDAEHALDP 97 (325)
T ss_pred HHHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCCEEEECccccHHH
Confidence 44555554 33244679999999999999999987763 3334456778887666654
No 299
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=93.32 E-value=0.059 Score=52.40 Aligned_cols=23 Identities=26% Similarity=0.462 Sum_probs=20.9
Q ss_pred eEEEEEcCCCchhhHHHHHHhcc
Q 002663 195 SVVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
.+|+|+|+.|+|||||++.++..
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 47899999999999999999874
No 300
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=93.32 E-value=0.06 Score=51.00 Aligned_cols=39 Identities=36% Similarity=0.406 Sum_probs=28.8
Q ss_pred EEEEEcCCCchhhHHHHHHhccccccCCCCceEEEEeCCCC
Q 002663 196 VVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEY 236 (895)
Q Consensus 196 vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~ 236 (895)
++.|+|.+|+||||+|+.+... ....-..++|++.....
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~--~~~~~~~v~~~~~e~~~ 39 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALN--IATKGGKVVYVDIEEEI 39 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHH--HHhcCCEEEEEECCcch
Confidence 4689999999999999999884 33334556677765443
No 301
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=93.30 E-value=0.054 Score=49.53 Aligned_cols=22 Identities=32% Similarity=0.708 Sum_probs=20.0
Q ss_pred EEEEEcCCCchhhHHHHHHhcc
Q 002663 196 VVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 196 vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
.|+|+|+.|+|||||++.+...
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhc
Confidence 3789999999999999999984
No 302
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=93.30 E-value=0.19 Score=51.76 Aligned_cols=40 Identities=20% Similarity=0.222 Sum_probs=30.2
Q ss_pred CceEEEEEcCCCchhhHHHHHHhccccccCCCCceEEEEeCC
Q 002663 193 KSSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGK 234 (895)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~ 234 (895)
.-.++.|.|.+|+||||+|.++... ....-..++|++...
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~--~a~~Ge~vlyis~Ee 74 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVT--QASRGNPVLFVTVES 74 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH--HHhCCCcEEEEEecC
Confidence 4579999999999999999887653 222345678888753
No 303
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=93.27 E-value=0.056 Score=51.69 Aligned_cols=22 Identities=41% Similarity=0.611 Sum_probs=20.3
Q ss_pred EEEEEcCCCchhhHHHHHHhcc
Q 002663 196 VVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 196 vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
.|.|.|.+|.||||+|+.+.+.
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999985
No 304
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=93.26 E-value=0.096 Score=54.74 Aligned_cols=47 Identities=26% Similarity=0.490 Sum_probs=40.8
Q ss_pred CCceeechhhHHHHHHHHhcC----CCCceEEEEEcCCCchhhHHHHHHhc
Q 002663 170 DDEVVGIESIKDKLIDLMVNG----RSKSSVVAVVGEGGLGKTTLAGKLFN 216 (895)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~~----~~~~~vv~I~G~gGiGKTtLA~~v~~ 216 (895)
...++|+++.++++++.+... +..-+++-++|+.|.||||||..+-+
T Consensus 60 ~~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~ 110 (358)
T PF08298_consen 60 EDEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKR 110 (358)
T ss_pred cccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999753 33458999999999999999999887
No 305
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=93.26 E-value=0.056 Score=50.73 Aligned_cols=21 Identities=33% Similarity=0.490 Sum_probs=19.4
Q ss_pred EEEEcCCCchhhHHHHHHhcc
Q 002663 197 VAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 197 v~I~G~gGiGKTtLA~~v~~~ 217 (895)
|.|+|++|.||||+|+.+...
T Consensus 2 i~l~G~~GsGKstla~~la~~ 22 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKA 22 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 789999999999999999873
No 306
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=93.23 E-value=0.073 Score=45.55 Aligned_cols=22 Identities=41% Similarity=0.616 Sum_probs=20.1
Q ss_pred ceEEEEEcCCCchhhHHHHHHh
Q 002663 194 SSVVAVVGEGGLGKTTLAGKLF 215 (895)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~ 215 (895)
-..++|.|+.|.|||||++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 4689999999999999999976
No 307
>PRK06761 hypothetical protein; Provisional
Probab=93.22 E-value=0.12 Score=53.13 Aligned_cols=23 Identities=30% Similarity=0.420 Sum_probs=21.5
Q ss_pred eEEEEEcCCCchhhHHHHHHhcc
Q 002663 195 SVVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
++|.|.|++|+||||+|+.+++.
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~ 26 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDI 26 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHh
Confidence 58999999999999999999985
No 308
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=93.21 E-value=0.15 Score=52.26 Aligned_cols=26 Identities=35% Similarity=0.401 Sum_probs=23.6
Q ss_pred CCceEEEEEcCCCchhhHHHHHHhcc
Q 002663 192 SKSSVVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 192 ~~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
.++.+|.|.|.+|.|||||+..+.+.
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~ 127 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMR 127 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45899999999999999999999884
No 309
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=93.19 E-value=0.1 Score=50.68 Aligned_cols=21 Identities=48% Similarity=0.871 Sum_probs=18.2
Q ss_pred EEEEEcCCCchhhHHHHHHhc
Q 002663 196 VVAVVGEGGLGKTTLAGKLFN 216 (895)
Q Consensus 196 vv~I~G~gGiGKTtLA~~v~~ 216 (895)
.|+|+|-||+||||+|..+..
T Consensus 2 kIaI~GKGG~GKTtiaalll~ 22 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLK 22 (255)
T ss_pred eEEEecCCCccHHHHHHHHHH
Confidence 589999999999999887444
No 310
>PRK03846 adenylylsulfate kinase; Provisional
Probab=93.19 E-value=0.076 Score=52.24 Aligned_cols=25 Identities=40% Similarity=0.506 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCchhhHHHHHHhcc
Q 002663 193 KSSVVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
...+|+|+|++|+||||||+.+...
T Consensus 23 ~~~~i~i~G~~GsGKSTla~~l~~~ 47 (198)
T PRK03846 23 KGVVLWFTGLSGSGKSTVAGALEEA 47 (198)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999999999883
No 311
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.12 E-value=0.0029 Score=60.50 Aligned_cols=86 Identities=20% Similarity=0.210 Sum_probs=68.3
Q ss_pred cCCCceeeEEecCCCCCCcCccccccccCCCeEeecCCCcccccccccCcCCCcEEEcCcccccccchhhhccccCCeEE
Q 002663 536 IANFKLMKVLDLEDSPINYLPEGVGNLFNLHLLNARNTKLKIIPKSIGNLLSLEILVLARTFVSELPEEIRNLKKLRSLI 615 (895)
Q Consensus 536 ~~~~~~L~~L~L~~~~~~~l~~~i~~l~~Lr~L~L~~~~l~~lp~~i~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~ 615 (895)
+..++..++||++.+.+..+-..++.+..|..|+++.+.+..+|...+.+..+..+++..|+.+.+|.+.++++.+++++
T Consensus 38 i~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNE 117 (326)
T ss_pred hhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhh
Confidence 45567788888888887777677777778888888888888888888888888888888888888888888888888888
Q ss_pred eecccc
Q 002663 616 VFHYKY 621 (895)
Q Consensus 616 l~~~~~ 621 (895)
+.++.+
T Consensus 118 ~k~~~~ 123 (326)
T KOG0473|consen 118 QKKTEF 123 (326)
T ss_pred hccCcc
Confidence 777643
No 312
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=93.11 E-value=0.074 Score=55.96 Aligned_cols=46 Identities=28% Similarity=0.338 Sum_probs=30.0
Q ss_pred eEEEEEcCCCchhhHHHHHHhccccccCCCCceEEEEeCCCCCHHHHH
Q 002663 195 SVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLL 242 (895)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~l~ 242 (895)
++|-+.|-|||||||+|-+..-. ....-..+.-|+.....+..+++
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~--~A~~G~rtLlvS~Dpa~~L~d~l 47 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALA--LARRGKRTLLVSTDPAHSLSDVL 47 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHH--HHHTTS-EEEEESSTTTHHHHHH
T ss_pred eEEEEecCCCCCcHHHHHHHHHH--HhhCCCCeeEeecCCCccHHHHh
Confidence 68899999999999999777663 22233345566655554444433
No 313
>PLN02348 phosphoribulokinase
Probab=93.11 E-value=0.17 Score=54.09 Aligned_cols=26 Identities=23% Similarity=0.447 Sum_probs=23.4
Q ss_pred CCceEEEEEcCCCchhhHHHHHHhcc
Q 002663 192 SKSSVVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 192 ~~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
+...+|||.|.+|.||||+|+.+.+.
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~~L~~~ 72 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMRRLTSV 72 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45689999999999999999999983
No 314
>PRK14530 adenylate kinase; Provisional
Probab=93.10 E-value=0.061 Score=53.73 Aligned_cols=23 Identities=26% Similarity=0.432 Sum_probs=20.6
Q ss_pred eEEEEEcCCCchhhHHHHHHhcc
Q 002663 195 SVVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
+.|.|+|++|+||||+|+.+...
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~ 26 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEE 26 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999874
No 315
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=93.09 E-value=0.092 Score=60.01 Aligned_cols=45 Identities=27% Similarity=0.383 Sum_probs=37.2
Q ss_pred CceeechhhHHHHHHHHhcCCCCceEEEEEcCCCchhhHHHHHHhcc
Q 002663 171 DEVVGIESIKDKLIDLMVNGRSKSSVVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
++++|.+..++.+...+.... ..-|.|+|..|+||||+|+.+++.
T Consensus 65 ~~iiGqs~~i~~l~~al~~~~--~~~vLi~Ge~GtGKt~lAr~i~~~ 109 (531)
T TIGR02902 65 DEIIGQEEGIKALKAALCGPN--PQHVIIYGPPGVGKTAAARLVLEE 109 (531)
T ss_pred HHeeCcHHHHHHHHHHHhCCC--CceEEEECCCCCCHHHHHHHHHHH
Confidence 579999999999998775433 345689999999999999999863
No 316
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=93.07 E-value=0.053 Score=51.50 Aligned_cols=21 Identities=33% Similarity=0.564 Sum_probs=19.1
Q ss_pred EEEEcCCCchhhHHHHHHhcc
Q 002663 197 VAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 197 v~I~G~gGiGKTtLA~~v~~~ 217 (895)
|.|+|+.|+||||+|+.+...
T Consensus 1 i~l~G~~GsGKSTla~~l~~~ 21 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHR 21 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999984
No 317
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=93.05 E-value=0.15 Score=47.39 Aligned_cols=36 Identities=22% Similarity=0.452 Sum_probs=30.4
Q ss_pred hhhHHHHHHHHhcCCCCceEEEEEcCCCchhhHHHHHHhcc
Q 002663 177 ESIKDKLIDLMVNGRSKSSVVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 177 ~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
.+.++++.++|.. +++.++|..|+|||||...+..+
T Consensus 23 ~~g~~~l~~~l~~-----k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 23 GEGIEELKELLKG-----KTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp TTTHHHHHHHHTT-----SEEEEECSTTSSHHHHHHHHHTS
T ss_pred CcCHHHHHHHhcC-----CEEEEECCCCCCHHHHHHHHHhh
Confidence 3557788888753 69999999999999999999985
No 318
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=93.03 E-value=0.19 Score=53.43 Aligned_cols=68 Identities=22% Similarity=0.285 Sum_probs=46.3
Q ss_pred HHHHHHHhcCCCCceEEEEEcCCCchhhHHHHHHhcccccc----CCCCceEEEEeCCCCCHHHHHHHHHHHH
Q 002663 181 DKLIDLMVNGRSKSSVVAVVGEGGLGKTTLAGKLFNNEGLK----THFSCRAWVTVGKEYNKNDLLRTIIKEF 249 (895)
Q Consensus 181 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~----~~F~~~~wv~~~~~~~~~~l~~~i~~~l 249 (895)
..+.++|..+=+.-.++-|+|.+|+|||+|+..++-..... ..-..++||+....|.+..+.+ +++.+
T Consensus 113 ~~LD~lLgGGi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~ 184 (344)
T PLN03187 113 QALDELLGGGIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERF 184 (344)
T ss_pred HhHHhhcCCCCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHc
Confidence 44555555443445788999999999999998886432221 1124678999999999888765 34433
No 319
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=93.02 E-value=0.1 Score=59.98 Aligned_cols=50 Identities=14% Similarity=0.180 Sum_probs=41.7
Q ss_pred CCCCceeechhhHHHHHHHHhcCC---CCceEEEEEcCCCchhhHHHHHHhcc
Q 002663 168 VEDDEVVGIESIKDKLIDLMVNGR---SKSSVVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 168 ~~~~~~vGr~~~~~~l~~~L~~~~---~~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
..-++++|-+..+++|..++.... ...+++.|+|++|+||||+++.++..
T Consensus 81 ~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~ 133 (637)
T TIGR00602 81 ETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKE 133 (637)
T ss_pred CCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 345789999999999999987542 23468999999999999999999974
No 320
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=93.00 E-value=0.11 Score=59.33 Aligned_cols=50 Identities=34% Similarity=0.500 Sum_probs=37.4
Q ss_pred CCCCceeechhhHHHHHHHHh---c-------CCCCceEEEEEcCCCchhhHHHHHHhcc
Q 002663 168 VEDDEVVGIESIKDKLIDLMV---N-------GRSKSSVVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 168 ~~~~~~vGr~~~~~~l~~~L~---~-------~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
+.-++++|.++.++++.+.+. . +....+-+.++|++|.|||++|+++++.
T Consensus 52 ~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~ 111 (495)
T TIGR01241 52 VTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGE 111 (495)
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 344678999988877776554 1 1122345889999999999999999984
No 321
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.99 E-value=0.07 Score=28.64 Aligned_cols=15 Identities=33% Similarity=0.534 Sum_probs=5.1
Q ss_pred CCCeEeecCCCcccc
Q 002663 564 NLHLLNARNTKLKII 578 (895)
Q Consensus 564 ~Lr~L~L~~~~l~~l 578 (895)
+|+.|++++|.++++
T Consensus 2 ~L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSL 16 (17)
T ss_dssp T-SEEEETSS--SSE
T ss_pred ccCEEECCCCCCCCC
Confidence 344444444444433
No 322
>PRK13948 shikimate kinase; Provisional
Probab=92.98 E-value=0.077 Score=50.95 Aligned_cols=25 Identities=28% Similarity=0.299 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCchhhHHHHHHhcc
Q 002663 193 KSSVVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
..+.|.++|+.|+||||+++.+...
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~ 33 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRA 33 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999999999984
No 323
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=92.98 E-value=0.18 Score=56.86 Aligned_cols=56 Identities=20% Similarity=0.216 Sum_probs=42.4
Q ss_pred CCceEEEEEcCCCchhhHHHHHHhccccccCCCCceEEEEeCCCCCHHHHHHHHHHHHHhc
Q 002663 192 SKSSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRTIIKEFHRL 252 (895)
Q Consensus 192 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~l~~~i~~~l~~~ 252 (895)
+.-++.-++|++|+||||||..|+... . -.++=|++|..-+...+-..|...+...
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkqa----G-YsVvEINASDeRt~~~v~~kI~~avq~~ 379 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQA----G-YSVVEINASDERTAPMVKEKIENAVQNH 379 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHhc----C-ceEEEecccccccHHHHHHHHHHHHhhc
Confidence 345799999999999999999999841 1 2355677888888877777777666543
No 324
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=92.97 E-value=0.092 Score=51.08 Aligned_cols=52 Identities=21% Similarity=0.152 Sum_probs=35.2
Q ss_pred chhhHHHHHHHHhcCCCCceEEEEEcCCCchhhHHHHHHhccccccCCCCceEEEE
Q 002663 176 IESIKDKLIDLMVNGRSKSSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVT 231 (895)
Q Consensus 176 r~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~ 231 (895)
+...-....+.|.. ..+|.+.|++|.|||.||.+..-+.-..+.|+..+++.
T Consensus 5 ~~~~Q~~~~~al~~----~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~R 56 (205)
T PF02562_consen 5 KNEEQKFALDALLN----NDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITR 56 (205)
T ss_dssp -SHHHHHHHHHHHH-----SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE
T ss_pred CCHHHHHHHHHHHh----CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 44555666666663 56999999999999999988887644457888877764
No 325
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=92.97 E-value=0.069 Score=47.64 Aligned_cols=23 Identities=39% Similarity=0.554 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCchhhHHHHHHhc
Q 002663 194 SSVVAVVGEGGLGKTTLAGKLFN 216 (895)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~ 216 (895)
..-|.|.|.+|+||||+|.+++.
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae 29 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAE 29 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHH
Confidence 34688999999999999999996
No 326
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=92.97 E-value=0.17 Score=51.89 Aligned_cols=66 Identities=26% Similarity=0.330 Sum_probs=43.8
Q ss_pred HHHHHHHhcCCCCceEEEEEcCCCchhhHHHHHHhccccccC----CCCceEEEEeCCCCCHHHHHHHHHH
Q 002663 181 DKLIDLMVNGRSKSSVVAVVGEGGLGKTTLAGKLFNNEGLKT----HFSCRAWVTVGKEYNKNDLLRTIIK 247 (895)
Q Consensus 181 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~----~F~~~~wv~~~~~~~~~~l~~~i~~ 247 (895)
+.|.++|..+=..-.+.=|+|.+|+|||.||..++-...+.. .=..++|++-...|....+.+ |++
T Consensus 25 ~~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~-i~~ 94 (256)
T PF08423_consen 25 KSLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQ-IAE 94 (256)
T ss_dssp HHHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHH-HHH
T ss_pred HHHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHH-Hhh
Confidence 455566643322346999999999999999988775422222 123588999888898877754 443
No 327
>PRK13975 thymidylate kinase; Provisional
Probab=92.96 E-value=0.072 Score=52.41 Aligned_cols=23 Identities=35% Similarity=0.377 Sum_probs=21.4
Q ss_pred eEEEEEcCCCchhhHHHHHHhcc
Q 002663 195 SVVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
..|+|.|+.|+||||+|+.+...
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~ 25 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEK 25 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999985
No 328
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=92.94 E-value=0.074 Score=50.85 Aligned_cols=24 Identities=29% Similarity=0.451 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCchhhHHHHHHhcc
Q 002663 194 SSVVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
...|.|+|+.|.||||+|+.+...
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~ 27 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQ 27 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHH
Confidence 346999999999999999999984
No 329
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=92.91 E-value=0.083 Score=52.11 Aligned_cols=24 Identities=38% Similarity=0.578 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCchhhHHHHHHhcc
Q 002663 194 SSVVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
..+|.++||+|.||||..+.++.+
T Consensus 19 p~~ilVvGMAGSGKTTF~QrL~~h 42 (366)
T KOG1532|consen 19 PVIILVVGMAGSGKTTFMQRLNSH 42 (366)
T ss_pred CcEEEEEecCCCCchhHHHHHHHH
Confidence 458889999999999999999985
No 330
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=92.90 E-value=0.073 Score=47.32 Aligned_cols=21 Identities=38% Similarity=0.781 Sum_probs=19.6
Q ss_pred EEEEcCCCchhhHHHHHHhcc
Q 002663 197 VAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 197 v~I~G~gGiGKTtLA~~v~~~ 217 (895)
|.|+|..|+|||||.+.+.+.
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~ 22 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGG 22 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHhcC
Confidence 789999999999999999985
No 331
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=92.90 E-value=0.13 Score=54.39 Aligned_cols=36 Identities=22% Similarity=0.386 Sum_probs=27.1
Q ss_pred HHHHHHhcCCCCceEEEEEcCCCchhhHHHHHHhcc
Q 002663 182 KLIDLMVNGRSKSSVVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 182 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
++.+.+........+|+|.|.+|+|||||+..+...
T Consensus 44 ~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~~ 79 (332)
T PRK09435 44 ELLDALLPHTGNALRIGITGVPGVGKSTFIEALGMH 79 (332)
T ss_pred HHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 444444333345789999999999999999987764
No 332
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=92.90 E-value=0.066 Score=49.81 Aligned_cols=22 Identities=36% Similarity=0.498 Sum_probs=20.0
Q ss_pred EEEEEcCCCchhhHHHHHHhcc
Q 002663 196 VVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 196 vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
+|.|+|.+|.||||+|+.+...
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~ 22 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEK 22 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHH
Confidence 5789999999999999999884
No 333
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=92.85 E-value=0.23 Score=50.42 Aligned_cols=61 Identities=16% Similarity=0.217 Sum_probs=40.8
Q ss_pred HHHHHHHHhcCCCCceEEEEEcCCCchhhHHHHHHhccccccCCCCceEEEEeCCCCCHHHHHHH
Q 002663 180 KDKLIDLMVNGRSKSSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRT 244 (895)
Q Consensus 180 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~l~~~ 244 (895)
+..+.+.|..+=+.-.++.|+|.+|+||||+|.++... ...+-..++|++.... +.++.+.
T Consensus 11 i~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~--~~~~g~~~~y~~~e~~--~~~~~~~ 71 (234)
T PRK06067 11 NEELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYG--ALKQGKKVYVITTENT--SKSYLKQ 71 (234)
T ss_pred CHHHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHH--HHhCCCEEEEEEcCCC--HHHHHHH
Confidence 34555655544345679999999999999999998653 2223456778887543 3444444
No 334
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=92.84 E-value=0.93 Score=46.68 Aligned_cols=80 Identities=19% Similarity=0.275 Sum_probs=52.5
Q ss_pred CCceeechhhHHHHHHHHhcC--CCCceEEEEEcCCCchhhHHHHHHhccccccCCC-CceEEEEeCCCCCHH-HHHHHH
Q 002663 170 DDEVVGIESIKDKLIDLMVNG--RSKSSVVAVVGEGGLGKTTLAGKLFNNEGLKTHF-SCRAWVTVGKEYNKN-DLLRTI 245 (895)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F-~~~~wv~~~~~~~~~-~l~~~i 245 (895)
...++|-.++..++.+++... ..+..-|.|+|+.|.|||+|.-.+..+ ...| +..+-|......... -.++.|
T Consensus 23 ~~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~---~q~~~E~~l~v~Lng~~~~dk~al~~I 99 (408)
T KOG2228|consen 23 HINLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSD---IQENGENFLLVRLNGELQTDKIALKGI 99 (408)
T ss_pred CcceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhh---HHhcCCeEEEEEECccchhhHHHHHHH
Confidence 356789999999998888643 233557789999999999998777775 2233 333444444443332 346667
Q ss_pred HHHHHhc
Q 002663 246 IKEFHRL 252 (895)
Q Consensus 246 ~~~l~~~ 252 (895)
..|+...
T Consensus 100 ~rql~~e 106 (408)
T KOG2228|consen 100 TRQLALE 106 (408)
T ss_pred HHHHHHH
Confidence 6666544
No 335
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=92.84 E-value=0.13 Score=52.47 Aligned_cols=51 Identities=27% Similarity=0.462 Sum_probs=35.5
Q ss_pred ceEEEEEcCCCchhhHHHHHHhccccccCCCCc-eEEEEeCCCC-CHHHHHHHHH
Q 002663 194 SSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSC-RAWVTVGKEY-NKNDLLRTII 246 (895)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~-~~wv~~~~~~-~~~~l~~~i~ 246 (895)
-+.++|.|..|+||||||+.+++. ++.+|+. ++++-+.+.. .+.++.+++.
T Consensus 69 GQr~~If~~~G~GKTtLa~~i~~~--i~~~~~~~~V~~~iGer~~Ev~e~~~~~~ 121 (274)
T cd01133 69 GGKIGLFGGAGVGKTVLIMELINN--IAKAHGGYSVFAGVGERTREGNDLYHEMK 121 (274)
T ss_pred CCEEEEecCCCCChhHHHHHHHHH--HHhcCCCEEEEEEeccCcHHHHHHHHHHH
Confidence 468899999999999999999994 5556644 4455555543 3445555443
No 336
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=92.84 E-value=0.2 Score=53.00 Aligned_cols=64 Identities=20% Similarity=0.204 Sum_probs=43.7
Q ss_pred hhHHHHHHHHhcCCCCceEEEEEcCCCchhhHHHHHHhccccccC----CCCceEEEEeCCCCCHHHH
Q 002663 178 SIKDKLIDLMVNGRSKSSVVAVVGEGGLGKTTLAGKLFNNEGLKT----HFSCRAWVTVGKEYNKNDL 241 (895)
Q Consensus 178 ~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~----~F~~~~wv~~~~~~~~~~l 241 (895)
.-.+.+..+|..+=..-.++.|+|.+|+||||||..++....... .-..++|++....+....+
T Consensus 80 tg~~~lD~ll~gGi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl 147 (316)
T TIGR02239 80 TGSKELDKLLGGGIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL 147 (316)
T ss_pred CCCHHHHHHhcCCCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH
Confidence 334556666655434568999999999999999998875321211 1235789998887777753
No 337
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=92.81 E-value=0.11 Score=62.48 Aligned_cols=50 Identities=26% Similarity=0.355 Sum_probs=39.3
Q ss_pred CCCCceeechhhHHHHHHHHhcC-----------CCCceEEEEEcCCCchhhHHHHHHhcc
Q 002663 168 VEDDEVVGIESIKDKLIDLMVNG-----------RSKSSVVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 168 ~~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
+.-+++.|.+..++++.+++... -...+-|.++|++|+||||||+++++.
T Consensus 175 ~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~ 235 (733)
T TIGR01243 175 VTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANE 235 (733)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHH
Confidence 34456899999999998887421 122457889999999999999999984
No 338
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=92.81 E-value=0.095 Score=50.84 Aligned_cols=34 Identities=29% Similarity=0.468 Sum_probs=27.1
Q ss_pred ceEEEEEcCCCchhhHHHHHHhccccccCCCCceEE
Q 002663 194 SSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAW 229 (895)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~w 229 (895)
.++|.|+|+.|+|||||++++... ....|...++
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~--~~~~~~~~v~ 35 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQE--FPDKFGRVVS 35 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHH--STTTEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh--ccccccccee
Confidence 478999999999999999999983 5666643333
No 339
>PRK14737 gmk guanylate kinase; Provisional
Probab=92.78 E-value=0.091 Score=50.83 Aligned_cols=24 Identities=21% Similarity=0.378 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCchhhHHHHHHhcc
Q 002663 194 SSVVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
.++|.|+|+.|+|||||++++...
T Consensus 4 ~~~ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 4 PKLFIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 578999999999999999999874
No 340
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=92.78 E-value=0.2 Score=53.26 Aligned_cols=70 Identities=19% Similarity=0.228 Sum_probs=47.0
Q ss_pred hhHHHHHHHHhcCCCCceEEEEEcCCCchhhHHHHHHhcccccc----CCCCceEEEEeCCCCCHHHHHHHHHHH
Q 002663 178 SIKDKLIDLMVNGRSKSSVVAVVGEGGLGKTTLAGKLFNNEGLK----THFSCRAWVTVGKEYNKNDLLRTIIKE 248 (895)
Q Consensus 178 ~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~----~~F~~~~wv~~~~~~~~~~l~~~i~~~ 248 (895)
.-...+.++|..+=..-.++-|+|.+|+|||+||..++-..... ..-..++|++....|.+..+.+ |++.
T Consensus 107 tG~~~LD~lL~GG~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~q-ia~~ 180 (342)
T PLN03186 107 TGSRELDKILEGGIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLIQ-IAER 180 (342)
T ss_pred CCCHHHHHhhcCCCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHHH-HHHH
Confidence 33455666665443446789999999999999998777432221 1112688999999888877643 3443
No 341
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=92.77 E-value=0.17 Score=52.11 Aligned_cols=49 Identities=27% Similarity=0.470 Sum_probs=39.6
Q ss_pred CCCceeechhhHHH---HHHHHhcCCCCceEEEEEcCCCchhhHHHHHHhcc
Q 002663 169 EDDEVVGIESIKDK---LIDLMVNGRSKSSVVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 169 ~~~~~vGr~~~~~~---l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
..+.+||..+..+. +++++..+.-.-+.|.|+|++|.|||+||..+...
T Consensus 37 ~~dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~e 88 (450)
T COG1224 37 IGDGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIARE 88 (450)
T ss_pred cCCcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHH
Confidence 35678998777654 66777766555789999999999999999999984
No 342
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.77 E-value=0.011 Score=55.75 Aligned_cols=36 Identities=14% Similarity=0.099 Sum_probs=22.7
Q ss_pred CCcceEEEEeccCCCcchhhhccCccccceeecccc
Q 002663 738 KNLIGLRLILSGLTEDPISILQALPNLLELMLHGGY 773 (895)
Q Consensus 738 ~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~ 773 (895)
..++.++-+++.+..+.+..+..+++++.|.+.+|.
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck 136 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCK 136 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheecccc
Confidence 345666666676666666666666666666665553
No 343
>PRK13946 shikimate kinase; Provisional
Probab=92.72 E-value=0.078 Score=51.44 Aligned_cols=24 Identities=33% Similarity=0.447 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCchhhHHHHHHhcc
Q 002663 194 SSVVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
.+.|.++|+.|+||||+|+.+...
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~ 33 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATM 33 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999984
No 344
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=92.71 E-value=0.12 Score=51.78 Aligned_cols=23 Identities=43% Similarity=0.806 Sum_probs=21.1
Q ss_pred eEEEEEcCCCchhhHHHHHHhcc
Q 002663 195 SVVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
.-|+|+|++|+|||||+.++..+
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~ 28 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGD 28 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcC
Confidence 46899999999999999999986
No 345
>PRK09354 recA recombinase A; Provisional
Probab=92.70 E-value=0.17 Score=53.64 Aligned_cols=57 Identities=19% Similarity=0.193 Sum_probs=40.8
Q ss_pred HHHHHHHHh-cCCCCceEEEEEcCCCchhhHHHHHHhccccccCCCCceEEEEeCCCCCH
Q 002663 180 KDKLIDLMV-NGRSKSSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNK 238 (895)
Q Consensus 180 ~~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~ 238 (895)
...|..+|. .+=+.-+++-|+|++|+||||||.++... ....-..++||+....+++
T Consensus 45 i~~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~--~~~~G~~~~yId~E~s~~~ 102 (349)
T PRK09354 45 SLALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDP 102 (349)
T ss_pred cHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEECCccchHH
Confidence 344555565 33345679999999999999999887763 3344566789988776665
No 346
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=92.68 E-value=0.16 Score=49.97 Aligned_cols=22 Identities=36% Similarity=0.439 Sum_probs=20.6
Q ss_pred EEEEEcCCCchhhHHHHHHhcc
Q 002663 196 VVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 196 vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
+|+|.|+.|+||||+++.+.+.
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~ 23 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAER 23 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999984
No 347
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=92.64 E-value=0.094 Score=49.19 Aligned_cols=24 Identities=29% Similarity=0.619 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCchhhHHHHHHhcc
Q 002663 194 SSVVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
-.++.|.|+.|+|||||+++++.+
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~ 27 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLED 27 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 468999999999999999999995
No 348
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=92.63 E-value=0.12 Score=60.08 Aligned_cols=154 Identities=16% Similarity=0.210 Sum_probs=86.3
Q ss_pred CCceeechhhHHHHHHHHhcCCCCceEEEEEcCCCchhhHHHHHHhccc---cccCCC-CceEE-EEe-----C--CCCC
Q 002663 170 DDEVVGIESIKDKLIDLMVNGRSKSSVVAVVGEGGLGKTTLAGKLFNNE---GLKTHF-SCRAW-VTV-----G--KEYN 237 (895)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~---~~~~~F-~~~~w-v~~-----~--~~~~ 237 (895)
-+.++|||++++++++.|.....+-+ .++|-+|||||++|.-++.+. .+-... +..++ +++ + -.-+
T Consensus 169 lDPvIGRd~EI~r~iqIL~RR~KNNP--vLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~LvAGakyRGe 246 (786)
T COG0542 169 LDPVIGRDEEIRRTIQILSRRTKNNP--VLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSLVAGAKYRGE 246 (786)
T ss_pred CCCCcChHHHHHHHHHHHhccCCCCC--eEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHHHhccccccCc
Confidence 36689999999999999987643333 478999999999876666531 111111 22222 221 1 1235
Q ss_pred HHHHHHHHHHHHHhccCCC---CCCCC---c-cCcC-ccccHHHHHHhcCCCCCCcEEEEEcCch---hhhhhhccCCCc
Q 002663 238 KNDLLRTIIKEFHRLSKHG---RDGPD---R-HAEG-PLEGQKDVEHALLDNKKCSRIIVTTRHM---NVAKFCKSSSSV 306 (895)
Q Consensus 238 ~~~l~~~i~~~l~~~~~~~---~~~~~---~-~~~~-~L~~~~~l~~~l~~~~~gs~iivTTR~~---~v~~~~~~~~~~ 306 (895)
.++=++.+++.+....... +.... . .... .++.-.-++.+|..+. -..|--||-++ .+.+--+-...-
T Consensus 247 FEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGe-L~~IGATT~~EYRk~iEKD~AL~RRF 325 (786)
T COG0542 247 FEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGE-LRCIGATTLDEYRKYIEKDAALERRF 325 (786)
T ss_pred HHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcCC-eEEEEeccHHHHHHHhhhchHHHhcC
Confidence 6677778888776543110 00000 0 0011 2444444554554443 33466676553 121111111222
Q ss_pred ceeeccCCChhhHHHHHHHh
Q 002663 307 RIHELETLPPDEAWKLFCRK 326 (895)
Q Consensus 307 ~~~~l~~L~~~es~~Lf~~~ 326 (895)
+.+.|...+.+++.+++.--
T Consensus 326 Q~V~V~EPs~e~ti~ILrGl 345 (786)
T COG0542 326 QKVLVDEPSVEDTIAILRGL 345 (786)
T ss_pred ceeeCCCCCHHHHHHHHHHH
Confidence 68999999999999998754
No 349
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=92.63 E-value=0.085 Score=49.25 Aligned_cols=28 Identities=29% Similarity=0.444 Sum_probs=23.2
Q ss_pred eEEEEEcCCCchhhHHHHHHhccccccCCC
Q 002663 195 SVVAVVGEGGLGKTTLAGKLFNNEGLKTHF 224 (895)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F 224 (895)
+-|.++||.|+||||+.++++. ...-.|
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk--~L~~~F 30 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAK--ALNLPF 30 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHH--HcCCCc
Confidence 3578999999999999999998 355555
No 350
>PRK13768 GTPase; Provisional
Probab=92.63 E-value=0.12 Score=52.90 Aligned_cols=36 Identities=33% Similarity=0.284 Sum_probs=25.4
Q ss_pred ceEEEEEcCCCchhhHHHHHHhccccccCCCCceEEEE
Q 002663 194 SSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVT 231 (895)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~ 231 (895)
..++.|.|.||+||||++..+... ....-..++.|+
T Consensus 2 ~~~i~v~G~~G~GKTt~~~~~~~~--l~~~g~~v~~i~ 37 (253)
T PRK13768 2 MYIVFFLGTAGSGKTTLTKALSDW--LEEQGYDVAIVN 37 (253)
T ss_pred cEEEEEECCCCccHHHHHHHHHHH--HHhcCCceEEEE
Confidence 358899999999999999888763 323323444554
No 351
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=92.61 E-value=0.091 Score=52.10 Aligned_cols=26 Identities=38% Similarity=0.477 Sum_probs=23.5
Q ss_pred CCceEEEEEcCCCchhhHHHHHHhcc
Q 002663 192 SKSSVVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 192 ~~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
.++++|+++|..|+|||||..++...
T Consensus 20 ~~~~~i~~~G~~gsGKTTli~~l~~~ 45 (207)
T TIGR00073 20 HGLVVLNFMSSPGSGKTTLIEKLIDN 45 (207)
T ss_pred cCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999998874
No 352
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=92.60 E-value=0.076 Score=55.46 Aligned_cols=23 Identities=30% Similarity=0.615 Sum_probs=19.7
Q ss_pred eEEEEEcCCCchhhHHHHHHhcc
Q 002663 195 SVVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
+.|+|+|-||+||||+|..+..-
T Consensus 1 ~~ia~~gKGGVGKTT~a~nLA~~ 23 (275)
T TIGR01287 1 RQIAIYGKGGIGKSTTTQNIAAA 23 (275)
T ss_pred CeeEEeCCCcCcHHHHHHHHHHH
Confidence 47899999999999988777763
No 353
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=92.58 E-value=0.12 Score=51.43 Aligned_cols=34 Identities=32% Similarity=0.513 Sum_probs=28.7
Q ss_pred EEEEEcCCCchhhHHHHHHhccccccCCCCceEEEE
Q 002663 196 VVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVT 231 (895)
Q Consensus 196 vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~ 231 (895)
.++|+|..|.||||+++.+... ....|+.+++++
T Consensus 15 r~viIG~sGSGKT~li~~lL~~--~~~~f~~I~l~t 48 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYY--LRHKFDHIFLIT 48 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHh--hcccCCEEEEEe
Confidence 6789999999999999999984 778887766664
No 354
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=92.58 E-value=0.079 Score=50.19 Aligned_cols=21 Identities=38% Similarity=0.653 Sum_probs=18.3
Q ss_pred EEEEcCCCchhhHHHHHHhcc
Q 002663 197 VAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 197 v~I~G~gGiGKTtLA~~v~~~ 217 (895)
|.|.|.+|+|||||++.+.+.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~ 22 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEE 22 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHH
Confidence 689999999999999999874
No 355
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=92.57 E-value=0.29 Score=49.49 Aligned_cols=52 Identities=27% Similarity=0.250 Sum_probs=34.9
Q ss_pred HHHHHHHhcCCCCceEEEEEcCCCchhhHHHHHHhccccccCCCCceEEEEeCC
Q 002663 181 DKLIDLMVNGRSKSSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGK 234 (895)
Q Consensus 181 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~ 234 (895)
+.+.+.|..+=+.-.++.|.|.+|.||||+|.++... ....-..++|++...
T Consensus 7 ~~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~--~~~~g~~~~~is~e~ 58 (229)
T TIGR03881 7 EGLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYK--GLRDGDPVIYVTTEE 58 (229)
T ss_pred hhHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHH--HHhcCCeEEEEEccC
Confidence 3445555433234579999999999999999887653 222345678887643
No 356
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=92.57 E-value=0.13 Score=56.22 Aligned_cols=48 Identities=35% Similarity=0.410 Sum_probs=35.6
Q ss_pred CCceeechhhHHHHHHHHhc-------C-----C--CCceEEEEEcCCCchhhHHHHHHhcc
Q 002663 170 DDEVVGIESIKDKLIDLMVN-------G-----R--SKSSVVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~-------~-----~--~~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
+..+||.+..++.+...+.. . + ..-.-|.++|++|+|||++|+.+...
T Consensus 70 ~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~ 131 (412)
T PRK05342 70 DQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARI 131 (412)
T ss_pred hhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHH
Confidence 35689999999888655421 0 0 01256899999999999999999873
No 357
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=92.53 E-value=0.092 Score=51.12 Aligned_cols=23 Identities=30% Similarity=0.410 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCchhhHHHHHHhc
Q 002663 194 SSVVAVVGEGGLGKTTLAGKLFN 216 (895)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~ 216 (895)
..+|||.|+.|+||||.|+.+.+
T Consensus 2 ~~iIglTG~igsGKStva~~~~~ 24 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE 24 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHH
Confidence 36899999999999999998876
No 358
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=92.52 E-value=1.7 Score=50.80 Aligned_cols=46 Identities=24% Similarity=0.368 Sum_probs=37.0
Q ss_pred CceeechhhHHHHHHHHhcC-------CCCceEEEEEcCCCchhhHHHHHHhc
Q 002663 171 DEVVGIESIKDKLIDLMVNG-------RSKSSVVAVVGEGGLGKTTLAGKLFN 216 (895)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vv~I~G~gGiGKTtLA~~v~~ 216 (895)
..++|-++.++.|.+.+... +......-..|+.|||||-||++++.
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~ 543 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAE 543 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHH
Confidence 56789999998888887642 23456888899999999999988887
No 359
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=92.52 E-value=0.15 Score=48.98 Aligned_cols=36 Identities=33% Similarity=0.317 Sum_probs=27.8
Q ss_pred ceEEEEEcCCCchhhHHHHHHhccccccCCCCceEEEEe
Q 002663 194 SSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTV 232 (895)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~ 232 (895)
-.||+|+|+.|.|||||.+-+.. ....=...+||+-
T Consensus 28 Gevv~iiGpSGSGKSTlLRclN~---LE~~~~G~I~i~g 63 (240)
T COG1126 28 GEVVVIIGPSGSGKSTLLRCLNG---LEEPDSGSITVDG 63 (240)
T ss_pred CCEEEEECCCCCCHHHHHHHHHC---CcCCCCceEEECC
Confidence 45999999999999999999886 3333356777753
No 360
>CHL00176 ftsH cell division protein; Validated
Probab=92.48 E-value=0.085 Score=61.15 Aligned_cols=49 Identities=27% Similarity=0.374 Sum_probs=36.7
Q ss_pred CCCceeechhhHHHHHHHHh---cC-------CCCceEEEEEcCCCchhhHHHHHHhcc
Q 002663 169 EDDEVVGIESIKDKLIDLMV---NG-------RSKSSVVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 169 ~~~~~vGr~~~~~~l~~~L~---~~-------~~~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
.-++++|.++..+++.+.+. .. ..-.+-|.++|++|.|||++|++++..
T Consensus 181 ~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e 239 (638)
T CHL00176 181 TFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGE 239 (638)
T ss_pred CHHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 34678999888877776653 21 112346899999999999999999984
No 361
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=92.46 E-value=0.17 Score=55.87 Aligned_cols=50 Identities=24% Similarity=0.349 Sum_probs=40.1
Q ss_pred CCCCceeechhhHHHHHHHHhcC----------CCCceEEEEEcCCCchhhHHHHHHhcc
Q 002663 168 VEDDEVVGIESIKDKLIDLMVNG----------RSKSSVVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 168 ~~~~~~vGr~~~~~~l~~~L~~~----------~~~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
+.-.++-|.+..+.++.+++..- =...+=|.++|++|.|||.||+++++.
T Consensus 187 v~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAge 246 (802)
T KOG0733|consen 187 VSFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGE 246 (802)
T ss_pred cchhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhh
Confidence 34467889999999999987642 112466889999999999999999995
No 362
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=92.39 E-value=0.081 Score=49.41 Aligned_cols=22 Identities=41% Similarity=0.596 Sum_probs=20.3
Q ss_pred EEEEEcCCCchhhHHHHHHhcc
Q 002663 196 VVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 196 vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
+|+|+|+.|+||||++.++...
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~ 22 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKA 22 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999984
No 363
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=92.38 E-value=0.1 Score=47.84 Aligned_cols=24 Identities=42% Similarity=0.573 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCchhhHHHHHHhcc
Q 002663 194 SSVVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
-.+++|+|..|.|||||.+.+...
T Consensus 11 g~~~~i~G~nGsGKStLl~~l~g~ 34 (137)
T PF00005_consen 11 GEIVAIVGPNGSGKSTLLKALAGL 34 (137)
T ss_dssp TSEEEEEESTTSSHHHHHHHHTTS
T ss_pred CCEEEEEccCCCccccceeeeccc
Confidence 358999999999999999999984
No 364
>PRK10865 protein disaggregation chaperone; Provisional
Probab=92.37 E-value=0.2 Score=60.70 Aligned_cols=47 Identities=21% Similarity=0.314 Sum_probs=38.0
Q ss_pred CceeechhhHHHHHHHHhcC-------CCCceEEEEEcCCCchhhHHHHHHhcc
Q 002663 171 DEVVGIESIKDKLIDLMVNG-------RSKSSVVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
..++|.+..++.|...+... +....++.++|+.|+|||++|+++++.
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~ 621 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANF 621 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999888632 112357889999999999999999973
No 365
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=92.35 E-value=0.14 Score=54.00 Aligned_cols=35 Identities=29% Similarity=0.369 Sum_probs=26.4
Q ss_pred HHHHHhcCCCCceEEEEEcCCCchhhHHHHHHhcc
Q 002663 183 LIDLMVNGRSKSSVVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 183 l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
+.+-+........+|+|.|.+|+||||++..+...
T Consensus 23 ~~~~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~~ 57 (300)
T TIGR00750 23 LLDRIMPYTGNAHRVGITGTPGAGKSTLLEALGME 57 (300)
T ss_pred HHHhCCcccCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 33333333345789999999999999999988874
No 366
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=92.33 E-value=0.11 Score=54.21 Aligned_cols=24 Identities=46% Similarity=0.639 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCchhhHHHHHHhcc
Q 002663 194 SSVVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
.++|+|+|++|+||||++..+...
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~ 217 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAAR 217 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 569999999999999999888764
No 367
>PF13245 AAA_19: Part of AAA domain
Probab=92.31 E-value=0.17 Score=40.48 Aligned_cols=23 Identities=43% Similarity=0.611 Sum_probs=17.5
Q ss_pred ceEEEEEcCCCchhhH-HHHHHhc
Q 002663 194 SSVVAVVGEGGLGKTT-LAGKLFN 216 (895)
Q Consensus 194 ~~vv~I~G~gGiGKTt-LA~~v~~ 216 (895)
.+++.|.|.+|.|||+ ++..+..
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~ 33 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAE 33 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 4578899999999994 5555554
No 368
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=92.28 E-value=0.091 Score=49.87 Aligned_cols=20 Identities=35% Similarity=0.464 Sum_probs=17.2
Q ss_pred EEEEcCCCchhhHHHHHHhc
Q 002663 197 VAVVGEGGLGKTTLAGKLFN 216 (895)
Q Consensus 197 v~I~G~gGiGKTtLA~~v~~ 216 (895)
|+|.|..|+|||||++.+..
T Consensus 2 I~i~G~~stGKTTL~~~L~~ 21 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAA 21 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 79999999999999999997
No 369
>PRK14527 adenylate kinase; Provisional
Probab=92.27 E-value=0.11 Score=50.91 Aligned_cols=24 Identities=38% Similarity=0.501 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCchhhHHHHHHhcc
Q 002663 194 SSVVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
..+|.|+|++|.||||+|+.+...
T Consensus 6 ~~~i~i~G~pGsGKsT~a~~La~~ 29 (191)
T PRK14527 6 NKVVIFLGPPGAGKGTQAERLAQE 29 (191)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999999874
No 370
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=92.26 E-value=0.099 Score=50.11 Aligned_cols=23 Identities=22% Similarity=0.355 Sum_probs=21.3
Q ss_pred eEEEEEcCCCchhhHHHHHHhcc
Q 002663 195 SVVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
.+++|+|..|.||||+++.+...
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~ 26 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAAL 26 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHh
Confidence 58999999999999999999984
No 371
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=92.25 E-value=0.23 Score=49.94 Aligned_cols=49 Identities=14% Similarity=0.346 Sum_probs=31.8
Q ss_pred CceEEEEEcCCCchhhHHHHHHhccccccCCCCceEEEEeCCCCCHHHHHHHH
Q 002663 193 KSSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRTI 245 (895)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~l~~~i 245 (895)
.-.++.|.|..|.||||+|.++... ....-..++|++. .-+..++.+.+
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~--~~~~g~~~~yi~~--e~~~~~~~~~~ 71 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYG--FLQNGYSVSYVST--QLTTTEFIKQM 71 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH--HHhCCCcEEEEeC--CCCHHHHHHHH
Confidence 3569999999999999998665543 2112244567663 33455666665
No 372
>PRK08356 hypothetical protein; Provisional
Probab=92.25 E-value=0.12 Score=50.64 Aligned_cols=22 Identities=41% Similarity=0.422 Sum_probs=19.8
Q ss_pred ceEEEEEcCCCchhhHHHHHHh
Q 002663 194 SSVVAVVGEGGLGKTTLAGKLF 215 (895)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~ 215 (895)
..+|+|.|++|+||||+|+.+.
T Consensus 5 ~~~i~~~G~~gsGK~t~a~~l~ 26 (195)
T PRK08356 5 KMIVGVVGKIAAGKTTVAKFFE 26 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999994
No 373
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=92.24 E-value=0.099 Score=50.05 Aligned_cols=22 Identities=36% Similarity=0.563 Sum_probs=20.5
Q ss_pred EEEEEcCCCchhhHHHHHHhcc
Q 002663 196 VVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 196 vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
+|+|.|+.|+||||+|+.+.+.
T Consensus 2 iI~i~G~~GSGKstia~~la~~ 23 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEK 23 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999999873
No 374
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=92.22 E-value=0.081 Score=51.42 Aligned_cols=24 Identities=33% Similarity=0.433 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCchhhHHHHHHhcc
Q 002663 194 SSVVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
-..++|+|..|.||||+++++..-
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~ 48 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 358999999999999999999873
No 375
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=92.21 E-value=0.2 Score=49.61 Aligned_cols=25 Identities=36% Similarity=0.373 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCchhhHHHHHHhcc
Q 002663 193 KSSVVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
+...|+|+|.+|+|||||...+.+.
T Consensus 40 ~~~~I~iiG~~g~GKStLl~~l~~~ 64 (204)
T cd01878 40 GIPTVALVGYTNAGKSTLFNALTGA 64 (204)
T ss_pred CCCeEEEECCCCCCHHHHHHHHhcc
Confidence 3568999999999999999999885
No 376
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=92.20 E-value=0.5 Score=50.78 Aligned_cols=82 Identities=15% Similarity=0.225 Sum_probs=61.9
Q ss_pred CCCceeechhhHHHHHHHHhcC--CCCceEEEEEcCCCchhhHHHHHHhccccccCCCCceEEEEeCCCCCHHHHHHHHH
Q 002663 169 EDDEVVGIESIKDKLIDLMVNG--RSKSSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRTII 246 (895)
Q Consensus 169 ~~~~~vGr~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~l~~~i~ 246 (895)
.++.++||+.++..+.+|+... .....-+-|.|-+|.|||.+...|+.+..-...=.++++++...-.....+...|.
T Consensus 148 ~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~ 227 (529)
T KOG2227|consen 148 PPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIF 227 (529)
T ss_pred CCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHHH
Confidence 3567999999999999998653 34567889999999999999999998632222213457777766667778888888
Q ss_pred HHHH
Q 002663 247 KEFH 250 (895)
Q Consensus 247 ~~l~ 250 (895)
..+.
T Consensus 228 ~~~~ 231 (529)
T KOG2227|consen 228 SSLL 231 (529)
T ss_pred HHHH
Confidence 7773
No 377
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=92.18 E-value=0.16 Score=54.03 Aligned_cols=45 Identities=27% Similarity=0.368 Sum_probs=35.6
Q ss_pred CceeechhhHHHHHHHHhcCCCCceEEEEEcCCCchhhHHHHHHhcc
Q 002663 171 DEVVGIESIKDKLIDLMVNGRSKSSVVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
..+||.++.+..+.-.+.... ..-|.|.|..|.|||||++.+..-
T Consensus 4 ~~ivgq~~~~~al~~~~~~~~--~g~vli~G~~G~gKttl~r~~~~~ 48 (337)
T TIGR02030 4 TAIVGQDEMKLALLLNVIDPK--IGGVMVMGDRGTGKSTAVRALAAL 48 (337)
T ss_pred cccccHHHHHHHHHHHhcCCC--CCeEEEEcCCCCCHHHHHHHHHHh
Confidence 468999999888766665432 445779999999999999999863
No 378
>PLN02796 D-glycerate 3-kinase
Probab=92.17 E-value=0.26 Score=51.90 Aligned_cols=25 Identities=32% Similarity=0.320 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCchhhHHHHHHhcc
Q 002663 193 KSSVVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
..-+|||.|..|.||||||+.+...
T Consensus 99 ~pliIGI~G~sGSGKSTLa~~L~~l 123 (347)
T PLN02796 99 PPLVIGISAPQGCGKTTLVFALVYL 123 (347)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHH
Confidence 4568999999999999999999984
No 379
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=92.16 E-value=0.22 Score=48.85 Aligned_cols=23 Identities=35% Similarity=0.362 Sum_probs=21.3
Q ss_pred eEEEEEcCCCchhhHHHHHHhcc
Q 002663 195 SVVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
..|+|.|..|+||||+|+.+.+.
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~ 26 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKL 26 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999984
No 380
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=92.15 E-value=0.19 Score=48.03 Aligned_cols=24 Identities=38% Similarity=0.545 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCchhhHHHHHHhcc
Q 002663 194 SSVVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
-.+++|+|..|.|||||++.+..-
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl 48 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQ 48 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcC
Confidence 459999999999999999999873
No 381
>PRK04182 cytidylate kinase; Provisional
Probab=92.14 E-value=0.1 Score=50.44 Aligned_cols=22 Identities=36% Similarity=0.564 Sum_probs=20.6
Q ss_pred EEEEEcCCCchhhHHHHHHhcc
Q 002663 196 VVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 196 vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
+|+|.|+.|.||||+|+.+...
T Consensus 2 ~I~i~G~~GsGKstia~~la~~ 23 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999984
No 382
>PLN02200 adenylate kinase family protein
Probab=92.13 E-value=0.12 Score=52.21 Aligned_cols=24 Identities=29% Similarity=0.405 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCchhhHHHHHHhcc
Q 002663 194 SSVVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
..+|.|.|++|+||||+|+.+...
T Consensus 43 ~~ii~I~G~PGSGKsT~a~~La~~ 66 (234)
T PLN02200 43 PFITFVLGGPGSGKGTQCEKIVET 66 (234)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999873
No 383
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.12 E-value=0.097 Score=28.09 Aligned_cols=17 Identities=29% Similarity=0.419 Sum_probs=10.1
Q ss_pred CCCcEEEcCcccccccc
Q 002663 586 LSLEILVLARTFVSELP 602 (895)
Q Consensus 586 ~~L~~L~L~~~~l~~lp 602 (895)
++|+.|++++|.++.+|
T Consensus 1 ~~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNRLTSLP 17 (17)
T ss_dssp TT-SEEEETSS--SSE-
T ss_pred CccCEEECCCCCCCCCc
Confidence 46888888888877766
No 384
>PRK04328 hypothetical protein; Provisional
Probab=92.09 E-value=0.33 Score=49.60 Aligned_cols=52 Identities=17% Similarity=0.253 Sum_probs=36.6
Q ss_pred HHHHHHHhcCCCCceEEEEEcCCCchhhHHHHHHhccccccCCCCceEEEEeCC
Q 002663 181 DKLIDLMVNGRSKSSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGK 234 (895)
Q Consensus 181 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~ 234 (895)
..+.++|..+=+.-.++.|.|.+|.|||+||.++... ....-..++|++...
T Consensus 10 ~~LD~lL~GGip~gs~ili~G~pGsGKT~l~~~fl~~--~~~~ge~~lyis~ee 61 (249)
T PRK04328 10 PGMDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWN--GLQMGEPGVYVALEE 61 (249)
T ss_pred hhHHHHhcCCCcCCcEEEEEcCCCCCHHHHHHHHHHH--HHhcCCcEEEEEeeC
Confidence 3455555444334679999999999999999886653 233456778888765
No 385
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=92.07 E-value=0.28 Score=43.13 Aligned_cols=47 Identities=17% Similarity=0.219 Sum_probs=31.5
Q ss_pred Cceeechhh----HHHHHHHHhcC-CCCceEEEEEcCCCchhhHHHHHHhcc
Q 002663 171 DEVVGIESI----KDKLIDLMVNG-RSKSSVVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 171 ~~~vGr~~~----~~~l~~~L~~~-~~~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
..++|-.-. ++.|...+... ++..-|++.+|..|+|||.+|+.+++.
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ 76 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEH 76 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHH
Confidence 345665544 44455555443 345679999999999999977666654
No 386
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=92.06 E-value=0.098 Score=44.36 Aligned_cols=22 Identities=55% Similarity=0.854 Sum_probs=19.5
Q ss_pred EEEEEcCCCchhhHHHHHHhcc
Q 002663 196 VVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 196 vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
++.+.|.+|+||||++..+...
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~ 22 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAA 22 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998884
No 387
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=92.06 E-value=0.15 Score=52.58 Aligned_cols=35 Identities=31% Similarity=0.335 Sum_probs=27.5
Q ss_pred eEEEEEcCCCchhhHHHHHHhccccccCCCCceEEEEe
Q 002663 195 SVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTV 232 (895)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~ 232 (895)
++|+|+|.+|+|||||+..+... .+.+. .+.-|..
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~~--L~~~G-~V~~IKh 36 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVDR--LSGRG-RVGTVKH 36 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH--HHhCC-CEEEEEE
Confidence 58999999999999999999984 55544 4555554
No 388
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.04 E-value=0.16 Score=50.49 Aligned_cols=34 Identities=21% Similarity=0.233 Sum_probs=26.4
Q ss_pred ceEEEEEcCCCchhhHHHHHHhccccccCCCCceEEE
Q 002663 194 SSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWV 230 (895)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv 230 (895)
-.+++|+|..|.|||||++.+... .......+++
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~---~~~~~G~i~~ 59 (210)
T cd03269 26 GEIFGLLGPNGAGKTTTIRMILGI---ILPDSGEVLF 59 (210)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC---CCCCceEEEE
Confidence 458999999999999999999983 2233455555
No 389
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=92.03 E-value=0.18 Score=49.27 Aligned_cols=24 Identities=38% Similarity=0.491 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCchhhHHHHHHhcc
Q 002663 194 SSVVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
-.+++|.|..|.|||||++.+...
T Consensus 18 Ge~~~i~G~nGsGKSTLl~~i~G~ 41 (190)
T TIGR01166 18 GEVLALLGANGAGKSTLLLHLNGL 41 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999983
No 390
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=92.03 E-value=0.2 Score=54.66 Aligned_cols=48 Identities=31% Similarity=0.356 Sum_probs=36.2
Q ss_pred CCceeechhhHHHHHHHHh-------c---CC--C----CceEEEEEcCCCchhhHHHHHHhcc
Q 002663 170 DDEVVGIESIKDKLIDLMV-------N---GR--S----KSSVVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~-------~---~~--~----~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
+..+||.++.++.+...+. . .. + .-..|.++|++|+|||++|+.+...
T Consensus 76 ~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~ 139 (413)
T TIGR00382 76 DEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARI 139 (413)
T ss_pred cceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHh
Confidence 4678999999998866551 1 11 1 1247999999999999999999973
No 391
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.02 E-value=0.19 Score=48.41 Aligned_cols=23 Identities=35% Similarity=0.549 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCchhhHHHHHHhc
Q 002663 194 SSVVAVVGEGGLGKTTLAGKLFN 216 (895)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~ 216 (895)
-.+++|+|..|.|||||++.+..
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G 48 (178)
T cd03229 26 GEIVALLGPSGSGKSTLLRCIAG 48 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45999999999999999999987
No 392
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=92.02 E-value=0.18 Score=50.47 Aligned_cols=34 Identities=21% Similarity=0.308 Sum_probs=26.1
Q ss_pred ceEEEEEcCCCchhhHHHHHHhccccccCCCCceEEE
Q 002663 194 SSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWV 230 (895)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv 230 (895)
-.+++|+|..|.|||||++.+..- .......+++
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~l~Gl---~~~~~G~i~~ 62 (216)
T TIGR00960 29 GEMVFLVGHSGAGKSTFLKLILGI---EKPTRGKIRF 62 (216)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC---CCCCceEEEE
Confidence 358999999999999999999983 2333455554
No 393
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=92.01 E-value=0.088 Score=53.98 Aligned_cols=22 Identities=27% Similarity=0.558 Sum_probs=19.8
Q ss_pred EEEEEcCCCchhhHHHHHHhcc
Q 002663 196 VVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 196 vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
.|.++|++|+||||+|+++...
T Consensus 1 LIvl~G~pGSGKST~a~~La~~ 22 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKK 22 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHH
Confidence 3789999999999999999874
No 394
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=92.01 E-value=0.5 Score=49.66 Aligned_cols=53 Identities=26% Similarity=0.502 Sum_probs=37.4
Q ss_pred CCceeechhhHHH---HHHHHhcCCCCceEEEEEcCCCchhhHHHHHHhccccccCCC
Q 002663 170 DDEVVGIESIKDK---LIDLMVNGRSKSSVVAVVGEGGLGKTTLAGKLFNNEGLKTHF 224 (895)
Q Consensus 170 ~~~~vGr~~~~~~---l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F 224 (895)
.+.+||..+..+. +++++..+.=.-+.|.|.|++|.|||+||.++... .....
T Consensus 23 ~~GlVGQ~~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~e--LG~~~ 78 (398)
T PF06068_consen 23 ADGLVGQEKAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKE--LGEDV 78 (398)
T ss_dssp ETTEES-HHHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHH--CTTTS
T ss_pred cccccChHHHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHH--hCCCC
Confidence 4679998877665 56666665445689999999999999999999994 55443
No 395
>PTZ00494 tuzin-like protein; Provisional
Probab=92.00 E-value=3.3 Score=44.64 Aligned_cols=74 Identities=22% Similarity=0.307 Sum_probs=52.6
Q ss_pred CCCceeechhhHHHHHHHHhcC-CCCceEEEEEcCCCchhhHHHHHHhccccccCCCCceEEEEeCCCCCHHHHHHHHHH
Q 002663 169 EDDEVVGIESIKDKLIDLMVNG-RSKSSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRTIIK 247 (895)
Q Consensus 169 ~~~~~vGr~~~~~~l~~~L~~~-~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~l~~~i~~ 247 (895)
....+|.|+.+-..+.+.|..- ....+++.+.|.-|.||++|.+.....+.. ..++|++...- +-++.|.+
T Consensus 369 ~~~~~V~R~~eE~~vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrkE~~-----paV~VDVRg~E---DtLrsVVK 440 (664)
T PTZ00494 369 AEAFEVRREDEEALVRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRVEGV-----ALVHVDVGGTE---DTLRSVVR 440 (664)
T ss_pred ccccccchhhHHHHHHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHHcCC-----CeEEEEecCCc---chHHHHHH
Confidence 4567899999998888888654 345789999999999999999887764222 35678776543 23444444
Q ss_pred HHH
Q 002663 248 EFH 250 (895)
Q Consensus 248 ~l~ 250 (895)
.++
T Consensus 441 ALg 443 (664)
T PTZ00494 441 ALG 443 (664)
T ss_pred HhC
Confidence 444
No 396
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=91.99 E-value=0.11 Score=54.50 Aligned_cols=25 Identities=20% Similarity=0.371 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCchhhHHHHHHhcc
Q 002663 193 KSSVVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
..+.++|||++|.|||.+|+++++.
T Consensus 147 ~PlgllL~GPPGcGKTllAraiA~e 171 (413)
T PLN00020 147 VPLILGIWGGKGQGKSFQCELVFKK 171 (413)
T ss_pred CCeEEEeeCCCCCCHHHHHHHHHHH
Confidence 4579999999999999999999995
No 397
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=91.99 E-value=0.18 Score=46.59 Aligned_cols=24 Identities=29% Similarity=0.497 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCchhhHHHHHHhcc
Q 002663 194 SSVVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
-.+++|.|..|.|||||++.+..-
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~ 49 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGE 49 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCC
Confidence 468999999999999999999984
No 398
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=91.99 E-value=0.095 Score=50.57 Aligned_cols=21 Identities=33% Similarity=0.488 Sum_probs=19.6
Q ss_pred EEEEEcCCCchhhHHHHHHhc
Q 002663 196 VVAVVGEGGLGKTTLAGKLFN 216 (895)
Q Consensus 196 vv~I~G~gGiGKTtLA~~v~~ 216 (895)
+|+|.|+.|+||||+|+.+.+
T Consensus 1 ii~itG~~gsGKst~~~~l~~ 21 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE 21 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999986
No 399
>PRK15453 phosphoribulokinase; Provisional
Probab=91.98 E-value=0.13 Score=52.30 Aligned_cols=24 Identities=33% Similarity=0.537 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCchhhHHHHHHhc
Q 002663 193 KSSVVAVVGEGGLGKTTLAGKLFN 216 (895)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLA~~v~~ 216 (895)
...+|+|.|.+|.||||+|+++..
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~ 27 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEK 27 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999999886
No 400
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=91.98 E-value=0.13 Score=48.72 Aligned_cols=22 Identities=41% Similarity=0.717 Sum_probs=19.9
Q ss_pred EEEEEcCCCchhhHHHHHHhcc
Q 002663 196 VVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 196 vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
.|+++|.+|+|||||++.+.++
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~ 23 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYD 23 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999875
No 401
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=91.96 E-value=0.14 Score=54.17 Aligned_cols=45 Identities=27% Similarity=0.350 Sum_probs=35.0
Q ss_pred CCceeechhhHHHHHHHHhcCCCCceEEEEEcCCCchhhHHHHHHhc
Q 002663 170 DDEVVGIESIKDKLIDLMVNGRSKSSVVAVVGEGGLGKTTLAGKLFN 216 (895)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 216 (895)
-+.++|.++.++.+.-.+... +..-|.+.|.+|.||||+|+.+..
T Consensus 7 f~~i~Gq~~~~~~l~~~~~~~--~~~~vLl~G~pG~gKT~lar~la~ 51 (334)
T PRK13407 7 FSAIVGQEEMKQAMVLTAIDP--GIGGVLVFGDRGTGKSTAVRALAA 51 (334)
T ss_pred HHHhCCHHHHHHHHHHHHhcc--CCCcEEEEcCCCCCHHHHHHHHHH
Confidence 467899999988877544322 234589999999999999999966
No 402
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=91.94 E-value=0.12 Score=45.69 Aligned_cols=21 Identities=38% Similarity=0.629 Sum_probs=19.6
Q ss_pred EEEEcCCCchhhHHHHHHhcc
Q 002663 197 VAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 197 v~I~G~gGiGKTtLA~~v~~~ 217 (895)
|+|.|+.|+|||||..++.+.
T Consensus 2 V~iiG~~~~GKSTlin~l~~~ 22 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTGK 22 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 799999999999999999974
No 403
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=91.90 E-value=0.23 Score=46.69 Aligned_cols=43 Identities=21% Similarity=0.252 Sum_probs=30.6
Q ss_pred echhhHHHHHHHHhcCC-CCceEEEEEcCCCchhhHHHHHHhcc
Q 002663 175 GIESIKDKLIDLMVNGR-SKSSVVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 175 Gr~~~~~~l~~~L~~~~-~~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
|.++.++.+.+++.... .....|+++|++|+|||||...+..+
T Consensus 82 ~~~~L~~~l~~~~~~~~~~~~~~v~~~G~~nvGKStliN~l~~~ 125 (157)
T cd01858 82 GKGSLIQLLRQFSKLHSDKKQISVGFIGYPNVGKSSIINTLRSK 125 (157)
T ss_pred cHHHHHHHHHHHHhhhccccceEEEEEeCCCCChHHHHHHHhcC
Confidence 55556666666553211 22457889999999999999999875
No 404
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=91.90 E-value=0.11 Score=49.77 Aligned_cols=23 Identities=35% Similarity=0.423 Sum_probs=20.6
Q ss_pred eEEEEEcCCCchhhHHHHHHhcc
Q 002663 195 SVVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
+.|.|+|+.|.||||+|+.+...
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~ 25 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQA 25 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 35889999999999999999984
No 405
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.88 E-value=0.21 Score=49.89 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=21.7
Q ss_pred eEEEEEcCCCchhhHHHHHHhcc
Q 002663 195 SVVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
.+++|+|..|.|||||++.+..-
T Consensus 24 e~~~i~G~nGsGKSTLl~~l~G~ 46 (214)
T cd03297 24 EVTGIFGASGAGKSTLLRCIAGL 46 (214)
T ss_pred eeEEEECCCCCCHHHHHHHHhCC
Confidence 79999999999999999999983
No 406
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=91.87 E-value=0.19 Score=50.42 Aligned_cols=24 Identities=42% Similarity=0.488 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCchhhHHHHHHhcc
Q 002663 194 SSVVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
-.+++|+|..|.|||||++.++.-
T Consensus 30 G~~~~l~G~nGsGKSTLl~~i~Gl 53 (218)
T cd03255 30 GEFVAIVGPSGSGKSTLLNILGGL 53 (218)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCC
Confidence 458999999999999999999983
No 407
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=91.87 E-value=0.19 Score=50.14 Aligned_cols=34 Identities=26% Similarity=0.344 Sum_probs=26.3
Q ss_pred ceEEEEEcCCCchhhHHHHHHhccccccCCCCceEEE
Q 002663 194 SSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWV 230 (895)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv 230 (895)
-.+++|+|..|.|||||++.+..- .......+++
T Consensus 28 G~~~~l~G~nGsGKSTLl~~i~Gl---~~~~~G~i~~ 61 (214)
T TIGR02673 28 GEFLFLTGPSGAGKTTLLKLLYGA---LTPSRGQVRI 61 (214)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC---CCCCCceEEE
Confidence 359999999999999999999983 2334555554
No 408
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=91.86 E-value=0.11 Score=51.67 Aligned_cols=22 Identities=36% Similarity=0.665 Sum_probs=18.9
Q ss_pred eEEEEEcCCCchhhHHHHHHhc
Q 002663 195 SVVAVVGEGGLGKTTLAGKLFN 216 (895)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~ 216 (895)
++|+|.|-||+||||++..+..
T Consensus 1 ~~iav~gKGGvGKTt~~~nLA~ 22 (212)
T cd02117 1 RQIAIYGKGGIGKSTTSQNLSA 22 (212)
T ss_pred CEEEEECCCcCcHHHHHHHHHH
Confidence 4799999999999998777665
No 409
>PRK09183 transposase/IS protein; Provisional
Probab=91.85 E-value=0.13 Score=52.82 Aligned_cols=24 Identities=33% Similarity=0.451 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCchhhHHHHHHhcc
Q 002663 194 SSVVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
...|.|+|++|+|||+||.++.+.
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~ 125 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYE 125 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHH
Confidence 346889999999999999999774
No 410
>COG1084 Predicted GTPase [General function prediction only]
Probab=91.85 E-value=2.4 Score=43.76 Aligned_cols=26 Identities=27% Similarity=0.405 Sum_probs=23.0
Q ss_pred CCceEEEEEcCCCchhhHHHHHHhcc
Q 002663 192 SKSSVVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 192 ~~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
.+.+.|.|.|++-||||||.+.+-.-
T Consensus 166 p~~pTivVaG~PNVGKSSlv~~lT~A 191 (346)
T COG1084 166 PDLPTIVVAGYPNVGKSSLVRKLTTA 191 (346)
T ss_pred CCCCeEEEecCCCCcHHHHHHHHhcC
Confidence 45789999999999999999999863
No 411
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=91.84 E-value=0.5 Score=42.52 Aligned_cols=83 Identities=17% Similarity=0.253 Sum_probs=41.9
Q ss_pred hcccCCCceeeEEecCCCCCCcCc-cccccccCCCeEeecCCCcccccc-cccCcCCCcEEEcCcccccccchh-hhccc
Q 002663 533 KSCIANFKLMKVLDLEDSPINYLP-EGVGNLFNLHLLNARNTKLKIIPK-SIGNLLSLEILVLARTFVSELPEE-IRNLK 609 (895)
Q Consensus 533 ~~~~~~~~~L~~L~L~~~~~~~l~-~~i~~l~~Lr~L~L~~~~l~~lp~-~i~~l~~L~~L~L~~~~l~~lp~~-i~~l~ 609 (895)
...|.++.+|+.+.+.. .+..++ ..|..+.+|+.+.+.++ +..++. .+.++.+|+.+.+.. .+..++.. +..++
T Consensus 5 ~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~ 81 (129)
T PF13306_consen 5 NNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCT 81 (129)
T ss_dssp TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-T
T ss_pred HHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccc
Confidence 35566777777777764 444443 34566667777777664 555543 355666777777755 44444443 34577
Q ss_pred cCCeEEeec
Q 002663 610 KLRSLIVFH 618 (895)
Q Consensus 610 ~L~~L~l~~ 618 (895)
+|+.+.+..
T Consensus 82 ~l~~i~~~~ 90 (129)
T PF13306_consen 82 NLKNIDIPS 90 (129)
T ss_dssp TECEEEETT
T ss_pred cccccccCc
Confidence 777777643
No 412
>PRK06835 DNA replication protein DnaC; Validated
Probab=91.83 E-value=0.16 Score=53.91 Aligned_cols=36 Identities=22% Similarity=0.221 Sum_probs=27.7
Q ss_pred eEEEEEcCCCchhhHHHHHHhccccccCCCCceEEEEe
Q 002663 195 SVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTV 232 (895)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~ 232 (895)
.-+.++|..|+|||.||.++++. ....-..++|+++
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~--l~~~g~~V~y~t~ 219 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKE--LLDRGKSVIYRTA 219 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHH--HHHCCCeEEEEEH
Confidence 67999999999999999999995 3333335566654
No 413
>PRK05973 replicative DNA helicase; Provisional
Probab=91.82 E-value=0.4 Score=48.00 Aligned_cols=48 Identities=19% Similarity=0.173 Sum_probs=33.5
Q ss_pred ceEEEEEcCCCchhhHHHHHHhccccccCCCCceEEEEeCCCCCHHHHHHHH
Q 002663 194 SSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRTI 245 (895)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~l~~~i 245 (895)
-.++.|.|.+|+||||+|.++... ...+-..++|++... +..++...+
T Consensus 64 Gsl~LIaG~PG~GKT~lalqfa~~--~a~~Ge~vlyfSlEe--s~~~i~~R~ 111 (237)
T PRK05973 64 GDLVLLGARPGHGKTLLGLELAVE--AMKSGRTGVFFTLEY--TEQDVRDRL 111 (237)
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHH--HHhcCCeEEEEEEeC--CHHHHHHHH
Confidence 468999999999999999887764 323345566776554 355555554
No 414
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=91.80 E-value=0.13 Score=46.64 Aligned_cols=23 Identities=39% Similarity=0.557 Sum_probs=20.9
Q ss_pred eEEEEEcCCCchhhHHHHHHhcc
Q 002663 195 SVVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
+.|-++|..|.|||||++++-..
T Consensus 2 krimliG~~g~GKTTL~q~L~~~ 24 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGE 24 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCC
Confidence 46889999999999999999985
No 415
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=91.79 E-value=0.13 Score=49.99 Aligned_cols=45 Identities=22% Similarity=0.260 Sum_probs=30.4
Q ss_pred EEEEEcCCCchhhHHHHHHhccccccCCCCceEEEEeCCCCCHHHHHHH
Q 002663 196 VVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRT 244 (895)
Q Consensus 196 vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~l~~~ 244 (895)
++.|.|.+|+|||++|.++... ....-..++|++... +..++.+.
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~--~~~~g~~v~~~s~e~--~~~~~~~~ 45 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYA--GLARGEPGLYVTLEE--SPEELIEN 45 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHH--HHHCCCcEEEEECCC--CHHHHHHH
Confidence 3679999999999999888764 223335577886643 34444443
No 416
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=91.77 E-value=0.17 Score=52.77 Aligned_cols=46 Identities=30% Similarity=0.376 Sum_probs=31.7
Q ss_pred ceeechhhHHHHHHHHhcC----------CCCceEEEEEcCCCchhhHHHHHHhcc
Q 002663 172 EVVGIESIKDKLIDLMVNG----------RSKSSVVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 172 ~~vGr~~~~~~l~~~L~~~----------~~~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
++.|..+.++-|.+..... ...-+-|..+|++|.|||-||++|+..
T Consensus 213 DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATE 268 (491)
T KOG0738|consen 213 DIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATE 268 (491)
T ss_pred hhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHh
Confidence 4555555555555543321 223467899999999999999999984
No 417
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=91.73 E-value=0.16 Score=54.06 Aligned_cols=47 Identities=30% Similarity=0.361 Sum_probs=37.7
Q ss_pred CCCceeechhhHHHHHHHHhcCCCCceEEEEEcCCCchhhHHHHHHhcc
Q 002663 169 EDDEVVGIESIKDKLIDLMVNGRSKSSVVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 169 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
+-+.+||-++.+..+...+... ...-|.|.|..|.||||+|+.+++-
T Consensus 15 pf~~ivGq~~~k~al~~~~~~p--~~~~vli~G~~GtGKs~~ar~~~~~ 61 (350)
T CHL00081 15 PFTAIVGQEEMKLALILNVIDP--KIGGVMIMGDRGTGKSTTIRALVDL 61 (350)
T ss_pred CHHHHhChHHHHHHHHHhccCC--CCCeEEEEcCCCCCHHHHHHHHHHH
Confidence 3468999999888888776653 3555679999999999999999763
No 418
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=91.70 E-value=0.12 Score=53.96 Aligned_cols=22 Identities=27% Similarity=0.502 Sum_probs=19.4
Q ss_pred eEEEEEcCCCchhhHHHHHHhc
Q 002663 195 SVVAVVGEGGLGKTTLAGKLFN 216 (895)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~ 216 (895)
++|+|+|-|||||||+|-.+..
T Consensus 2 ~~i~~~gKGGVGKTT~a~nLA~ 23 (279)
T PRK13230 2 RKFCFYGKGGIGKSTTVCNIAA 23 (279)
T ss_pred cEEEEECCCCCcHHHHHHHHHH
Confidence 5889999999999998877776
No 419
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=91.70 E-value=0.31 Score=56.25 Aligned_cols=50 Identities=22% Similarity=0.304 Sum_probs=41.1
Q ss_pred CCCCceeechhhHHHHHHHHhcCCCCceEEEEEcCCCchhhHHHHHHhcc
Q 002663 168 VEDDEVVGIESIKDKLIDLMVNGRSKSSVVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 168 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
.....+||.+..++++.+.+..-...-.-|.|+|..|+|||++|+.+++.
T Consensus 193 ~~~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~ 242 (534)
T TIGR01817 193 GKEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYL 242 (534)
T ss_pred CccCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHh
Confidence 34578999999999999888654333456789999999999999999984
No 420
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=91.70 E-value=0.19 Score=50.07 Aligned_cols=24 Identities=38% Similarity=0.448 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCchhhHHHHHHhcc
Q 002663 194 SSVVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
-.+++|+|..|.|||||++.++.-
T Consensus 27 G~~~~l~G~nGsGKSTLl~~l~G~ 50 (211)
T cd03225 27 GEFVLIVGPNGSGKSTLLRLLNGL 50 (211)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 469999999999999999999983
No 421
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=91.68 E-value=0.15 Score=53.97 Aligned_cols=25 Identities=52% Similarity=0.702 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCchhhHHHHHHhcc
Q 002663 193 KSSVVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
...+|+++|++|+||||++..++..
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~ 137 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHK 137 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 3679999999999999999988874
No 422
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.67 E-value=0.2 Score=50.36 Aligned_cols=34 Identities=32% Similarity=0.307 Sum_probs=26.4
Q ss_pred ceEEEEEcCCCchhhHHHHHHhccccccCCCCceEEE
Q 002663 194 SSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWV 230 (895)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv 230 (895)
-.+++|+|..|.|||||.+.+... .......+++
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~i~G~---~~~~~G~i~~ 59 (220)
T cd03265 26 GEIFGLLGPNGAGKTTTIKMLTTL---LKPTSGRATV 59 (220)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC---CCCCceEEEE
Confidence 468999999999999999999983 2334555554
No 423
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=91.66 E-value=0.22 Score=50.20 Aligned_cols=35 Identities=26% Similarity=0.328 Sum_probs=26.9
Q ss_pred ceEEEEEcCCCchhhHHHHHHhccccccCCCCceEEEE
Q 002663 194 SSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVT 231 (895)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~ 231 (895)
-.+++|.|+.|+|||||.+.++. +-.-=...++++
T Consensus 28 G~i~~iiGpNG~GKSTLLk~l~g---~l~p~~G~V~l~ 62 (258)
T COG1120 28 GEITGILGPNGSGKSTLLKCLAG---LLKPKSGEVLLD 62 (258)
T ss_pred CcEEEEECCCCCCHHHHHHHHhc---cCCCCCCEEEEC
Confidence 46999999999999999999998 333334455553
No 424
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=91.62 E-value=0.88 Score=52.04 Aligned_cols=156 Identities=15% Similarity=0.094 Sum_probs=79.3
Q ss_pred CCceeechhhHHHHHHHHhc---C--------CCCceEEEEEcCCCchhhHHHHHHhccccccCCCCceEEEEeCCC--C
Q 002663 170 DDEVVGIESIKDKLIDLMVN---G--------RSKSSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKE--Y 236 (895)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~---~--------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~--~ 236 (895)
-.++.|.+...+.+.+.+.. . -...+.|-++|++|.|||.||+++++. ....|-.+.+-..... -
T Consensus 241 ~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~--~~~~fi~v~~~~l~sk~vG 318 (494)
T COG0464 241 LDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALE--SRSRFISVKGSELLSKWVG 318 (494)
T ss_pred eehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhh--CCCeEEEeeCHHHhccccc
Confidence 35567777777666655432 1 134568999999999999999999993 4444433221121111 1
Q ss_pred CHHHHHHHHHHHHHhccCCCCCCCCccCcCc-------------cccHHHHHHhcCCCCCCcE--EEEEcCchhhhhhh-
Q 002663 237 NKNDLLRTIIKEFHRLSKHGRDGPDRHAEGP-------------LEGQKDVEHALLDNKKCSR--IIVTTRHMNVAKFC- 300 (895)
Q Consensus 237 ~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~-------------L~~~~~l~~~l~~~~~gs~--iivTTR~~~v~~~~- 300 (895)
..+...+.+.......... ....+..+. ......+...+.+....+. ||-||-.....+..
T Consensus 319 esek~ir~~F~~A~~~~p~---iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~ 395 (494)
T COG0464 319 ESEKNIRELFEKARKLAPS---IIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPAL 395 (494)
T ss_pred hHHHHHHHHHHHHHcCCCc---EEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhh
Confidence 1223333333332211000 000000000 1122333333433333333 44455554443321
Q ss_pred -ccCCCcceeeccCCChhhHHHHHHHhhcCC
Q 002663 301 -KSSSSVRIHELETLPPDEAWKLFCRKAFGP 330 (895)
Q Consensus 301 -~~~~~~~~~~l~~L~~~es~~Lf~~~a~~~ 330 (895)
....-+..+.+..-+.++..+.|+.+.-..
T Consensus 396 lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~ 426 (494)
T COG0464 396 LRPGRFDRLIYVPLPDLEERLEIFKIHLRDK 426 (494)
T ss_pred cccCccceEeecCCCCHHHHHHHHHHHhccc
Confidence 111223688999999999999999987543
No 425
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=91.59 E-value=0.13 Score=48.78 Aligned_cols=22 Identities=36% Similarity=0.530 Sum_probs=19.9
Q ss_pred eEEEEEcCCCchhhHHHHHHhc
Q 002663 195 SVVAVVGEGGLGKTTLAGKLFN 216 (895)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~ 216 (895)
+.|-+.|.+|+||||+|+++..
T Consensus 2 pLiIlTGyPgsGKTtfakeLak 23 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAK 23 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHH
Confidence 4678899999999999999987
No 426
>PTZ00035 Rad51 protein; Provisional
Probab=91.58 E-value=0.45 Score=50.78 Aligned_cols=62 Identities=19% Similarity=0.210 Sum_probs=42.4
Q ss_pred HHHHHHHHhcCCCCceEEEEEcCCCchhhHHHHHHhcccccc----CCCCceEEEEeCCCCCHHHH
Q 002663 180 KDKLIDLMVNGRSKSSVVAVVGEGGLGKTTLAGKLFNNEGLK----THFSCRAWVTVGKEYNKNDL 241 (895)
Q Consensus 180 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~----~~F~~~~wv~~~~~~~~~~l 241 (895)
.+.+.++|..+=+.-.++.|+|..|.|||||+..++-..... ..-..++|++....+.+..+
T Consensus 104 ~~~LD~lLgGGi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri 169 (337)
T PTZ00035 104 STQLDKLLGGGIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERI 169 (337)
T ss_pred cHHHHHHhCCCCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHH
Confidence 455666665443456799999999999999998887532211 11234669988777777764
No 427
>PF00142 Fer4_NifH: 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family; InterPro: IPR000392 This entry represents members of the NifH/BchL/ChlL family. Nitrogen fixing bacteria possess a nitrogenase enzyme complex that catalyses the reduction of molecular nitrogen to ammonia [, , ]. The nitrogenase enzyme complex consists of two components: Component I is nitrogenase MoFe protein or dinitrogenase, which contains 2 molecules each of 2 non-identical subunits. Component II is nitrogenase Fe protein or dinitrogenase reductase, which is a homodimer. The monomer is encoded by the nifH gene []. Component II has 2 ATP-binding domains and one 4Fe-4S cluster per homodimer: it supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component I for the reduction of molecular nitrogen to ammonia []. There are a number of conserved regions in the sequence of these proteins: in the N-terminal section there is an ATP-binding site motif 'A' (P-loop) IPR001687 from INTERPRO and in the central section there are two conserved cysteines which have been shown, in nifH, to be the ligands of the 4Fe-4S cluster. Protochlorophyllide reductase is involved in light-independent chlorophyll biosynthesis. The light-independent reaction uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This enzyme complex is composed of three subunits: ChlL, ChlN and ChlB. ChlL is present as a homodimer, and binds one 4Fe-4S cluster per dimer. The conserved domains, including the ATP-binding motif and the Fe-S binding motif found in the three subunits, are similar to those in nitrogenases []. ; GO: 0005524 ATP binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1CP2_A 2AFI_F 1N2C_F 1FP6_C 2AFK_G 1M34_M 1XD8_A 1NIP_A 1M1Y_N 1G21_H ....
Probab=91.57 E-value=0.19 Score=50.22 Aligned_cols=41 Identities=24% Similarity=0.310 Sum_probs=27.9
Q ss_pred eEEEEEcCCCchhhHHHHHHhccccccCCCCceEEEEeCCCCC
Q 002663 195 SVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYN 237 (895)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~ 237 (895)
+.|+|||-|||||+|.+.-+.- .....-..+.-|-+..+.+
T Consensus 1 r~IAiYGKGGIGKST~~~Nlsa--ala~~G~kVl~iGCDPK~D 41 (273)
T PF00142_consen 1 RKIAIYGKGGIGKSTTASNLSA--ALAEMGKKVLQIGCDPKAD 41 (273)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH--HHHHTT--EEEEEESSSST
T ss_pred CeEEEEcCCCcccChhhhHHHH--HHHhccceeeEecccCCCc
Confidence 5799999999999999877765 2344445566666555543
No 428
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=91.56 E-value=0.12 Score=47.86 Aligned_cols=22 Identities=36% Similarity=0.614 Sum_probs=19.6
Q ss_pred EEEEEcCCCchhhHHHHHHhcc
Q 002663 196 VVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 196 vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
+|++.|.+|+||||++..+...
T Consensus 1 ~i~~~G~~GsGKTt~~~~l~~~ 22 (148)
T cd03114 1 VIGITGVPGAGKSTLIDALITA 22 (148)
T ss_pred CEEEECCCCCcHHHHHHHHHHH
Confidence 4789999999999999988874
No 429
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=91.56 E-value=0.15 Score=47.69 Aligned_cols=23 Identities=48% Similarity=0.627 Sum_probs=21.2
Q ss_pred eEEEEEcCCCchhhHHHHHHhcc
Q 002663 195 SVVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
++|+|+|..|+|||||+..+...
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~ 24 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPA 24 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999974
No 430
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=91.52 E-value=0.41 Score=47.07 Aligned_cols=48 Identities=25% Similarity=0.224 Sum_probs=36.8
Q ss_pred CCceeechhhHHHHHHHHhcC-----------CCCceEEEEEcCCCchhhHHHHHHhcc
Q 002663 170 DDEVVGIESIKDKLIDLMVNG-----------RSKSSVVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
-+++-|-.+.++++.+..... -+..+=|.+||++|.|||-.|++|+|+
T Consensus 176 y~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanr 234 (435)
T KOG0729|consen 176 YSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANR 234 (435)
T ss_pred cccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcc
Confidence 356677888888887765431 133567889999999999999999994
No 431
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=91.51 E-value=0.15 Score=51.40 Aligned_cols=32 Identities=31% Similarity=0.316 Sum_probs=21.5
Q ss_pred EEcCCCchhhHHHHHHhccccccCCCCceEEEEe
Q 002663 199 VVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTV 232 (895)
Q Consensus 199 I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~ 232 (895)
|+||+|+||||+++.+.+. ....-..++-|+.
T Consensus 1 ViGpaGSGKTT~~~~~~~~--~~~~~~~~~~vNL 32 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEW--LESNGRDVYIVNL 32 (238)
T ss_dssp -EESTTSSHHHHHHHHHHH--HTTT-S-EEEEE-
T ss_pred CCCCCCCCHHHHHHHHHHH--HHhccCCceEEEc
Confidence 6899999999999999985 3333344455554
No 432
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=91.50 E-value=0.12 Score=56.33 Aligned_cols=26 Identities=38% Similarity=0.397 Sum_probs=23.2
Q ss_pred CCceEEEEEcCCCchhhHHHHHHhcc
Q 002663 192 SKSSVVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 192 ~~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
.-++.|+|+|..|.||||||+++...
T Consensus 217 ~~~~~IvI~G~~gsGKTTL~~~La~~ 242 (399)
T PRK08099 217 FFVRTVAILGGESSGKSTLVNKLANI 242 (399)
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 34789999999999999999999973
No 433
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=91.49 E-value=0.21 Score=50.19 Aligned_cols=34 Identities=26% Similarity=0.370 Sum_probs=25.9
Q ss_pred ceEEEEEcCCCchhhHHHHHHhccccccCCCCceEEE
Q 002663 194 SSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWV 230 (895)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv 230 (895)
-.+++|+|..|.|||||++.++.- .......+++
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl---~~~~~G~i~~ 61 (220)
T cd03263 28 GEIFGLLGHNGAGKTTTLKMLTGE---LRPTSGTAYI 61 (220)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC---CCCCCcEEEE
Confidence 358999999999999999999983 2233444444
No 434
>PRK08116 hypothetical protein; Validated
Probab=91.47 E-value=0.26 Score=50.91 Aligned_cols=35 Identities=29% Similarity=0.209 Sum_probs=26.8
Q ss_pred eEEEEEcCCCchhhHHHHHHhccccccCCCCceEEEE
Q 002663 195 SVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVT 231 (895)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~ 231 (895)
.-+.++|..|+|||.||.++++. ...+...++|++
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~--l~~~~~~v~~~~ 149 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANE--LIEKGVPVIFVN 149 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEE
Confidence 45889999999999999999995 333334456665
No 435
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=91.47 E-value=0.17 Score=54.01 Aligned_cols=46 Identities=22% Similarity=0.341 Sum_probs=38.5
Q ss_pred CceeechhhHHHHHHHHhcCCCCceEEEEEcCCCchhhHHHHHHhc
Q 002663 171 DEVVGIESIKDKLIDLMVNGRSKSSVVAVVGEGGLGKTTLAGKLFN 216 (895)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 216 (895)
+.++|.+..++++.+.+..-...-.-|.|+|-.|+||+++|+.++.
T Consensus 6 ~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~ 51 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHY 51 (326)
T ss_pred CccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHH
Confidence 4689999999999988865433345688999999999999999987
No 436
>PRK10646 ADP-binding protein; Provisional
Probab=91.46 E-value=0.27 Score=45.21 Aligned_cols=41 Identities=22% Similarity=0.285 Sum_probs=29.5
Q ss_pred hhhHHHHHHHHhcCCCCceEEEEEcCCCchhhHHHHHHhcc
Q 002663 177 ESIKDKLIDLMVNGRSKSSVVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 177 ~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
+++.+++-+.|...-..-.+|.+.|-=|.||||++|.+..-
T Consensus 11 ~~~t~~l~~~la~~l~~g~vi~L~GdLGaGKTtf~rgl~~~ 51 (153)
T PRK10646 11 EQATLDLGARVAKACDGATVIYLYGDLGAGKTTFSRGFLQA 51 (153)
T ss_pred HHHHHHHHHHHHHhCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 34455555555432222358999999999999999999874
No 437
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=91.45 E-value=0.22 Score=49.12 Aligned_cols=35 Identities=20% Similarity=0.183 Sum_probs=26.8
Q ss_pred ceEEEEEcCCCchhhHHHHHHhccccccCCCCceEEEE
Q 002663 194 SSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVT 231 (895)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~ 231 (895)
-.+++|+|..|.|||||++.+... .......+++.
T Consensus 27 Ge~~~l~G~nGsGKSTLl~~i~G~---~~~~~G~v~~~ 61 (200)
T PRK13540 27 GGLLHLKGSNGAGKTTLLKLIAGL---LNPEKGEILFE 61 (200)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC---CCCCCeeEEEC
Confidence 469999999999999999999983 23334555553
No 438
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=91.44 E-value=0.19 Score=44.36 Aligned_cols=24 Identities=33% Similarity=0.470 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCchhhHHHHHHhcc
Q 002663 194 SSVVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
-.+|.+.|.=|.||||++|.+...
T Consensus 15 g~vi~L~GdLGaGKTtf~r~l~~~ 38 (123)
T PF02367_consen 15 GDVILLSGDLGAGKTTFVRGLARA 38 (123)
T ss_dssp -EEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 479999999999999999999884
No 439
>PTZ00088 adenylate kinase 1; Provisional
Probab=91.44 E-value=0.13 Score=51.57 Aligned_cols=22 Identities=32% Similarity=0.490 Sum_probs=20.0
Q ss_pred EEEEEcCCCchhhHHHHHHhcc
Q 002663 196 VVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 196 vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
.|.|.|++|+||||+|+.+...
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~ 29 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKK 29 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3899999999999999999874
No 440
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=91.44 E-value=0.25 Score=56.77 Aligned_cols=45 Identities=20% Similarity=0.219 Sum_probs=32.9
Q ss_pred eeechhhHHHHHHHHhcCCCCceEEEEEcCCCchhhHHHHHHhcc
Q 002663 173 VVGIESIKDKLIDLMVNGRSKSSVVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 173 ~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
.+.|.+-.+.|.++.......-.+|.|+|+.|+||||+|++++..
T Consensus 371 ~f~rpeV~~iL~~~~~~r~~~g~~Ivl~Gl~GSGKSTia~~La~~ 415 (568)
T PRK05537 371 WFSFPEVVAELRRTYPPRHKQGFTVFFTGLSGAGKSTIAKALMVK 415 (568)
T ss_pred hhcHHHHHHHHHHHhccccCCCeEEEEECCCCChHHHHHHHHHHH
Confidence 344555556555555444444568999999999999999999984
No 441
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=91.43 E-value=0.17 Score=54.28 Aligned_cols=24 Identities=42% Similarity=0.598 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCchhhHHHHHHhcc
Q 002663 194 SSVVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
-.+++++|+.|+||||++.++...
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~ 160 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAAR 160 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 469999999999999999998874
No 442
>COG4240 Predicted kinase [General function prediction only]
Probab=91.41 E-value=0.2 Score=48.10 Aligned_cols=55 Identities=18% Similarity=0.227 Sum_probs=35.1
Q ss_pred CceEEEEEcCCCchhhHHHHHHhccccccCCCCceEEEEeCCCCCHHHHHHHHHHH
Q 002663 193 KSSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRTIIKE 248 (895)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~l~~~i~~~ 248 (895)
+.-++||.|+-|.||||++..+++....+.- +.+...+...-+-...-+-.++++
T Consensus 49 rPli~gisGpQGSGKStls~~i~~~L~~kg~-ert~~lSLDDlYlthadrl~La~q 103 (300)
T COG4240 49 RPLIVGISGPQGSGKSTLSALIVRLLAAKGL-ERTATLSLDDLYLTHADRLRLARQ 103 (300)
T ss_pred CceEEEeecCCCCchhhHHHHHHHHHHHhcc-cceEEeehhhhhcchHHHHHHHHh
Confidence 4669999999999999999999985333332 455555544433333333444444
No 443
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=91.41 E-value=0.13 Score=50.55 Aligned_cols=21 Identities=33% Similarity=0.504 Sum_probs=19.5
Q ss_pred EEEEcCCCchhhHHHHHHhcc
Q 002663 197 VAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 197 v~I~G~gGiGKTtLA~~v~~~ 217 (895)
|.|.|++|+||||+|+.+...
T Consensus 2 I~i~G~pGsGKst~a~~La~~ 22 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKK 22 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999884
No 444
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.40 E-value=0.23 Score=49.85 Aligned_cols=24 Identities=38% Similarity=0.483 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCchhhHHHHHHhcc
Q 002663 194 SSVVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
-.+++|+|..|.|||||++.++.-
T Consensus 30 G~~~~i~G~nGsGKSTLl~~l~Gl 53 (220)
T cd03293 30 GEFVALVGPSGCGKSTLLRIIAGL 53 (220)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999983
No 445
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=91.39 E-value=0.21 Score=49.81 Aligned_cols=24 Identities=33% Similarity=0.565 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCchhhHHHHHHhcc
Q 002663 194 SSVVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
-.+++|+|..|.|||||++.+...
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~G~ 48 (213)
T cd03235 25 GEFLAIVGPNGAGKSTLLKAILGL 48 (213)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCC
Confidence 458999999999999999999983
No 446
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.38 E-value=0.21 Score=49.71 Aligned_cols=32 Identities=28% Similarity=0.290 Sum_probs=25.1
Q ss_pred EEEEEcCCCchhhHHHHHHhccccccCCCCceEEE
Q 002663 196 VVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWV 230 (895)
Q Consensus 196 vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv 230 (895)
+++|+|..|.|||||++.++.- .......+++
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl---~~~~~G~i~~ 58 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATL---TPPSSGTIRI 58 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCC---CCCCccEEEE
Confidence 8999999999999999999973 2233455554
No 447
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=91.37 E-value=0.21 Score=50.75 Aligned_cols=34 Identities=29% Similarity=0.280 Sum_probs=26.1
Q ss_pred ceEEEEEcCCCchhhHHHHHHhccccccCCCCceEEE
Q 002663 194 SSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWV 230 (895)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv 230 (895)
-.+++|+|..|.|||||++.+... .......+++
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~---~~p~~G~i~~ 60 (236)
T TIGR03864 27 GEFVALLGPNGAGKSTLFSLLTRL---YVAQEGQISV 60 (236)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC---cCCCceEEEE
Confidence 459999999999999999999973 2233455554
No 448
>PRK14974 cell division protein FtsY; Provisional
Probab=91.32 E-value=0.24 Score=52.51 Aligned_cols=24 Identities=46% Similarity=0.553 Sum_probs=20.9
Q ss_pred CceEEEEEcCCCchhhHHHHHHhc
Q 002663 193 KSSVVAVVGEGGLGKTTLAGKLFN 216 (895)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLA~~v~~ 216 (895)
+..+|+++|++|+||||.+..++.
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~ 162 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAY 162 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 368999999999999998777776
No 449
>PRK01184 hypothetical protein; Provisional
Probab=91.32 E-value=0.14 Score=49.63 Aligned_cols=21 Identities=29% Similarity=0.517 Sum_probs=18.0
Q ss_pred eEEEEEcCCCchhhHHHHHHhc
Q 002663 195 SVVAVVGEGGLGKTTLAGKLFN 216 (895)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~ 216 (895)
.+|+|+|++|+||||+|+ ++.
T Consensus 2 ~~i~l~G~~GsGKsT~a~-~~~ 22 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK-IAR 22 (184)
T ss_pred cEEEEECCCCCCHHHHHH-HHH
Confidence 489999999999999987 444
No 450
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=91.31 E-value=0.2 Score=52.17 Aligned_cols=39 Identities=26% Similarity=0.308 Sum_probs=26.6
Q ss_pred eEEEEEcCCCchhhHHHHHHhccccccCCCCceEEEEeCCC
Q 002663 195 SVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKE 235 (895)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~ 235 (895)
++|+|.|-||+||||+|..+..- ....-..+.-|+....
T Consensus 2 ~~iav~~KGGvGKTT~~~nLA~~--La~~G~kVlliD~Dpq 40 (270)
T cd02040 2 RQIAIYGKGGIGKSTTTQNLSAA--LAEMGKKVMIVGCDPK 40 (270)
T ss_pred cEEEEEeCCcCCHHHHHHHHHHH--HHhCCCeEEEEEcCCC
Confidence 57888899999999998887773 3322234555655443
No 451
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=91.30 E-value=0.25 Score=53.42 Aligned_cols=54 Identities=22% Similarity=0.246 Sum_probs=37.7
Q ss_pred hhHHHHHHHHhcCCCCceEEEEEcCCCchhhHHHHHHhccccccCCCCceEEEEeC
Q 002663 178 SIKDKLIDLMVNGRSKSSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVG 233 (895)
Q Consensus 178 ~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~ 233 (895)
.-+.++.+.|..+=..-.++.|.|.+|+|||||+.+++.. ....-..++|++..
T Consensus 66 TGi~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~--~a~~g~~VlYvs~E 119 (372)
T cd01121 66 TGIEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAAR--LAKRGGKVLYVSGE 119 (372)
T ss_pred cCCHHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHH--HHhcCCeEEEEECC
Confidence 3345666666544334579999999999999999988874 33333467787654
No 452
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=91.29 E-value=0.13 Score=50.76 Aligned_cols=23 Identities=26% Similarity=0.338 Sum_probs=20.1
Q ss_pred ceEEEEEcCCCchhhHHHHHHhc
Q 002663 194 SSVVAVVGEGGLGKTTLAGKLFN 216 (895)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~ 216 (895)
...+.|||.+|+||||+|+.+..
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~~ 34 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLPG 34 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcCC
Confidence 35699999999999999998864
No 453
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=91.26 E-value=0.23 Score=48.66 Aligned_cols=24 Identities=25% Similarity=0.404 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCchhhHHHHHHhcc
Q 002663 194 SSVVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
-.+++|+|..|.|||||++.+...
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (195)
T PRK13541 26 SAITYIKGANGCGKSSLLRMIAGI 49 (195)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 359999999999999999999984
No 454
>PHA02244 ATPase-like protein
Probab=91.24 E-value=0.17 Score=53.60 Aligned_cols=43 Identities=14% Similarity=0.217 Sum_probs=29.0
Q ss_pred CceeechhhH----HHHHHHHhcCCCCceEEEEEcCCCchhhHHHHHHhcc
Q 002663 171 DEVVGIESIK----DKLIDLMVNGRSKSSVVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 171 ~~~vGr~~~~----~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
..++|....+ ..+..++..+ .-|-|+|+.|+|||++|++++..
T Consensus 96 ~~~ig~sp~~~~~~~ri~r~l~~~----~PVLL~GppGtGKTtLA~aLA~~ 142 (383)
T PHA02244 96 TTKIASNPTFHYETADIAKIVNAN----IPVFLKGGAGSGKNHIAEQIAEA 142 (383)
T ss_pred CcccCCCHHHHHHHHHHHHHHhcC----CCEEEECCCCCCHHHHHHHHHHH
Confidence 3455544444 3444454432 24678999999999999999984
No 455
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=91.24 E-value=0.27 Score=53.68 Aligned_cols=24 Identities=42% Similarity=0.455 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCchhhHHHHHHhcc
Q 002663 194 SSVVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
..+|.++|.+|+||||.|..++..
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~ 123 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYY 123 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 579999999999999998888763
No 456
>PRK14532 adenylate kinase; Provisional
Probab=91.24 E-value=0.14 Score=49.98 Aligned_cols=21 Identities=29% Similarity=0.417 Sum_probs=19.3
Q ss_pred EEEEcCCCchhhHHHHHHhcc
Q 002663 197 VAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 197 v~I~G~gGiGKTtLA~~v~~~ 217 (895)
|.|.|++|+||||+|+.+...
T Consensus 3 i~~~G~pGsGKsT~a~~la~~ 23 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEE 23 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 788999999999999999873
No 457
>PRK13236 nitrogenase reductase; Reviewed
Probab=91.24 E-value=0.17 Score=53.27 Aligned_cols=25 Identities=28% Similarity=0.529 Sum_probs=21.3
Q ss_pred CCceEEEEEcCCCchhhHHHHHHhc
Q 002663 192 SKSSVVAVVGEGGLGKTTLAGKLFN 216 (895)
Q Consensus 192 ~~~~vv~I~G~gGiGKTtLA~~v~~ 216 (895)
++.++|++.|-|||||||+|..+..
T Consensus 4 ~~~~~~~~~GKGGVGKTt~a~NLA~ 28 (296)
T PRK13236 4 ENIRQIAFYGKGGIGKSTTSQNTLA 28 (296)
T ss_pred cCceEEEEECCCcCCHHHHHHHHHH
Confidence 4579999999999999998766665
No 458
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.22 E-value=0.24 Score=47.48 Aligned_cols=24 Identities=29% Similarity=0.495 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCchhhHHHHHHhcc
Q 002663 194 SSVVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
-.+++|+|..|.|||||++.++..
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~ 49 (173)
T cd03230 26 GEIYGLLGPNGAGKTTLIKIILGL 49 (173)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999884
No 459
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=91.21 E-value=0.14 Score=53.28 Aligned_cols=22 Identities=36% Similarity=0.667 Sum_probs=19.3
Q ss_pred eEEEEEcCCCchhhHHHHHHhc
Q 002663 195 SVVAVVGEGGLGKTTLAGKLFN 216 (895)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~ 216 (895)
++|+|+|-|||||||+|..+..
T Consensus 2 ~~iav~gKGGVGKTT~a~nLA~ 23 (273)
T PRK13232 2 RQIAIYGKGGIGKSTTTQNLTA 23 (273)
T ss_pred CEEEEECCCCCcHHHHHHHHHH
Confidence 5788999999999998877776
No 460
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=91.21 E-value=0.66 Score=52.41 Aligned_cols=81 Identities=16% Similarity=0.215 Sum_probs=48.2
Q ss_pred CCceeechhhHHHHHHHHhcCCCCceEEEEEcCCCchhhHHHHHHhccccccCCCCceEEEEeCCC--CCHHHHHHHHHH
Q 002663 170 DDEVVGIESIKDKLIDLMVNGRSKSSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKE--YNKNDLLRTIIK 247 (895)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~--~~~~~l~~~i~~ 247 (895)
+.+++--....++..+.....--...-|-|.|..|+|||+||+++++... +...-.+.+|+++.- ...+.+++.+..
T Consensus 407 e~d~i~~~s~kke~~n~~~spv~~~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~ 485 (952)
T KOG0735|consen 407 EHDFIQVPSYKKENANQELSPVFRHGNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSSLEKIQKFLNN 485 (952)
T ss_pred CCceeecchhhhhhhhhhcccccccccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccchhHHHHHHHHHH
Confidence 34555544445555543332222345789999999999999999999533 333344556666543 335555555544
Q ss_pred HHHh
Q 002663 248 EFHR 251 (895)
Q Consensus 248 ~l~~ 251 (895)
-+..
T Consensus 486 vfse 489 (952)
T KOG0735|consen 486 VFSE 489 (952)
T ss_pred HHHH
Confidence 4443
No 461
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=91.20 E-value=0.36 Score=53.20 Aligned_cols=25 Identities=44% Similarity=0.519 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCchhhHHHHHHhcc
Q 002663 193 KSSVVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
...+|.++|.+|+||||.|..++..
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~ 118 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARY 118 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 3679999999999999999988874
No 462
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=91.20 E-value=0.21 Score=49.00 Aligned_cols=22 Identities=32% Similarity=0.499 Sum_probs=19.8
Q ss_pred EEEEEcCCCchhhHHHHHHhcc
Q 002663 196 VVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 196 vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
+|.|+|+.|.||||++.++...
T Consensus 3 lilI~GptGSGKTTll~~ll~~ 24 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDY 24 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7899999999999999988763
No 463
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=91.20 E-value=0.24 Score=49.68 Aligned_cols=35 Identities=29% Similarity=0.431 Sum_probs=26.6
Q ss_pred ceEEEEEcCCCchhhHHHHHHhccccccCCCCceEEEE
Q 002663 194 SSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVT 231 (895)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~ 231 (895)
-.++||+|-.|.||||+++.+.. ...--...++..
T Consensus 39 ge~~glVGESG~GKSTlgr~i~~---L~~pt~G~i~f~ 73 (268)
T COG4608 39 GETLGLVGESGCGKSTLGRLILG---LEEPTSGEILFE 73 (268)
T ss_pred CCEEEEEecCCCCHHHHHHHHHc---CcCCCCceEEEc
Confidence 46999999999999999999998 444334444443
No 464
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=91.19 E-value=0.2 Score=48.64 Aligned_cols=24 Identities=29% Similarity=0.542 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCchhhHHHHHHhcc
Q 002663 194 SSVVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
.+.|.|+|+.|+||+||++.+...
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~ 25 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQE 25 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhc
Confidence 468999999999999999999984
No 465
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=91.17 E-value=0.19 Score=46.50 Aligned_cols=25 Identities=36% Similarity=0.497 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCchhhHHHHHHhcc
Q 002663 193 KSSVVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
...+|-+.|..|.||||+|.+++..
T Consensus 22 ~~~viW~TGLSGsGKSTiA~ale~~ 46 (197)
T COG0529 22 KGAVIWFTGLSGSGKSTIANALEEK 46 (197)
T ss_pred CCeEEEeecCCCCCHHHHHHHHHHH
Confidence 3579999999999999999999983
No 466
>PRK14531 adenylate kinase; Provisional
Probab=91.16 E-value=0.15 Score=49.35 Aligned_cols=22 Identities=32% Similarity=0.428 Sum_probs=20.2
Q ss_pred EEEEEcCCCchhhHHHHHHhcc
Q 002663 196 VVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 196 vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
.|.|.|++|.||||+|+.+...
T Consensus 4 ~i~i~G~pGsGKsT~~~~la~~ 25 (183)
T PRK14531 4 RLLFLGPPGAGKGTQAARLCAA 25 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999884
No 467
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=91.15 E-value=0.19 Score=54.29 Aligned_cols=24 Identities=46% Similarity=0.490 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCchhhHHHHHHhcc
Q 002663 194 SSVVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
..+|.++|++|+||||+|..+...
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~ 246 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAK 246 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999888863
No 468
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=91.15 E-value=0.26 Score=49.55 Aligned_cols=34 Identities=29% Similarity=0.351 Sum_probs=26.0
Q ss_pred ceEEEEEcCCCchhhHHHHHHhccccccCCCCceEEE
Q 002663 194 SSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWV 230 (895)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv 230 (895)
-.+++|+|..|.|||||++.+..- .......+++
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~Gl---~~~~~G~i~~ 59 (222)
T cd03224 26 GEIVALLGRNGAGKTTLLKTIMGL---LPPRSGSIRF 59 (222)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCC---CCCCCceEEE
Confidence 469999999999999999999873 2333445554
No 469
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=91.14 E-value=0.26 Score=48.86 Aligned_cols=23 Identities=43% Similarity=0.648 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCchhhHHHHHHhc
Q 002663 194 SSVVAVVGEGGLGKTTLAGKLFN 216 (895)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~ 216 (895)
-.+++|.|..|.|||||.+.++.
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~G 48 (205)
T cd03226 26 GEIIALTGKNGAGKTTLAKILAG 48 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35999999999999999999998
No 470
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=91.12 E-value=0.49 Score=47.60 Aligned_cols=59 Identities=20% Similarity=0.313 Sum_probs=37.8
Q ss_pred HHHHHHhcCCCCceEEEEEcCCCchhhHHHHHHhccccccCCCCceEEEEeCCCCCHHHHHHH
Q 002663 182 KLIDLMVNGRSKSSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRT 244 (895)
Q Consensus 182 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~l~~~ 244 (895)
.+.+.|..+=+.-.++.|.|.+|+|||++|.+++.. ....=..++|++... .+.++.+.
T Consensus 4 ~LD~~l~gGi~~g~~~li~G~~G~GKt~~~~~~~~~--~~~~g~~~~y~s~e~--~~~~l~~~ 62 (224)
T TIGR03880 4 GLDEMLGGGFPEGHVIVVIGEYGTGKTTFSLQFLYQ--GLKNGEKAMYISLEE--REERILGY 62 (224)
T ss_pred hhHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCC--CHHHHHHH
Confidence 344444433234579999999999999999888763 222335677887765 34444433
No 471
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=91.10 E-value=0.25 Score=49.94 Aligned_cols=23 Identities=39% Similarity=0.627 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCchhhHHHHHHhc
Q 002663 194 SSVVAVVGEGGLGKTTLAGKLFN 216 (895)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~ 216 (895)
-.+++|+|..|.|||||++.++.
T Consensus 36 Ge~~~i~G~nGsGKSTLl~~i~G 58 (228)
T PRK10584 36 GETIALIGESGSGKSTLLAILAG 58 (228)
T ss_pred CCEEEEECCCCCCHHHHHHHHHc
Confidence 46999999999999999999998
No 472
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.08 E-value=0.25 Score=50.43 Aligned_cols=24 Identities=38% Similarity=0.479 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCchhhHHHHHHhcc
Q 002663 194 SSVVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
-.+++|+|..|.|||||++.++.-
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (241)
T cd03256 27 GEFVALIGPSGAGKSTLLRCLNGL 50 (241)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999973
No 473
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=91.08 E-value=0.16 Score=48.21 Aligned_cols=22 Identities=32% Similarity=0.665 Sum_probs=19.5
Q ss_pred EEEEEcCCCchhhHHHHHHhcc
Q 002663 196 VVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 196 vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
-|+|+|.+|+|||||++++.+.
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~ 23 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQG 23 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999998864
No 474
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=91.07 E-value=0.26 Score=49.52 Aligned_cols=34 Identities=32% Similarity=0.343 Sum_probs=26.2
Q ss_pred ceEEEEEcCCCchhhHHHHHHhccccccCCCCceEEE
Q 002663 194 SSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWV 230 (895)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv 230 (895)
-.+++|+|..|.|||||.+.++.. .......+++
T Consensus 31 G~~~~i~G~nGsGKSTLl~~i~G~---~~~~~G~i~~ 64 (221)
T TIGR02211 31 GEIVAIVGSSGSGKSTLLHLLGGL---DNPTSGEVLF 64 (221)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC---CCCCCcEEEE
Confidence 459999999999999999999983 2333455554
No 475
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=91.06 E-value=0.25 Score=50.48 Aligned_cols=34 Identities=26% Similarity=0.286 Sum_probs=25.8
Q ss_pred ceEEEEEcCCCchhhHHHHHHhccccccCCCCceEEE
Q 002663 194 SSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWV 230 (895)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv 230 (895)
-.+++|+|..|.|||||++.++.- .......+++
T Consensus 28 Ge~~~l~G~nGsGKSTLl~~l~Gl---~~~~~G~i~~ 61 (243)
T TIGR02315 28 GEFVAIIGPSGAGKSTLLRCINRL---VEPSSGSILL 61 (243)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC---cCCCccEEEE
Confidence 359999999999999999999973 2233444544
No 476
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=91.06 E-value=0.27 Score=58.91 Aligned_cols=47 Identities=23% Similarity=0.374 Sum_probs=37.6
Q ss_pred CceeechhhHHHHHHHHhcC-------CCCceEEEEEcCCCchhhHHHHHHhcc
Q 002663 171 DEVVGIESIKDKLIDLMVNG-------RSKSSVVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
..++|.++.++.+.+.+... .....++.++|+.|+|||+||+.++..
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~ 507 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEA 507 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHH
Confidence 46889999999988887632 112346889999999999999999984
No 477
>PRK06526 transposase; Provisional
Probab=91.02 E-value=0.15 Score=51.99 Aligned_cols=24 Identities=38% Similarity=0.313 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCchhhHHHHHHhcc
Q 002663 194 SSVVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
..-|.|+|++|+|||+||.++.+.
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~ 121 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIR 121 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHH
Confidence 356899999999999999999874
No 478
>PRK13695 putative NTPase; Provisional
Probab=91.02 E-value=0.15 Score=48.95 Aligned_cols=22 Identities=36% Similarity=0.516 Sum_probs=19.9
Q ss_pred EEEEEcCCCchhhHHHHHHhcc
Q 002663 196 VVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 196 vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
.|+|.|.+|+|||||++.+++.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999874
No 479
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=91.00 E-value=0.16 Score=47.26 Aligned_cols=36 Identities=36% Similarity=0.342 Sum_probs=26.4
Q ss_pred ceEEEEEcCCCchhhHHHHHHhccccccCCCCceEEEE
Q 002663 194 SSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVT 231 (895)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~ 231 (895)
.++++|+|..|+|||||..++... .+.+--.+.-|.
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~--L~~~G~rVa~iK 37 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRK--LKARGYRVATVK 37 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHH--HHhCCcEEEEEE
Confidence 469999999999999999999873 444333344443
No 480
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=91.00 E-value=0.15 Score=56.27 Aligned_cols=128 Identities=16% Similarity=0.150 Sum_probs=63.0
Q ss_pred eEEEEEcCCCchhhHHHHHHhccccccCCCCceEEEEeCCCC-------CHHHHHHHHHHHHHhccC------CC-CCCC
Q 002663 195 SVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEY-------NKNDLLRTIIKEFHRLSK------HG-RDGP 260 (895)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~-------~~~~l~~~i~~~l~~~~~------~~-~~~~ 260 (895)
.=|.+||++|.|||-||++|+|. ....| +++-..- .-+...+++......... +. .-.+
T Consensus 546 sGvLL~GPPGCGKTLlAKAVANE--ag~NF-----isVKGPELlNkYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p 618 (802)
T KOG0733|consen 546 SGVLLCGPPGCGKTLLAKAVANE--AGANF-----ISVKGPELLNKYVGESERAVRQVFQRARASAPCVIFFDEIDALVP 618 (802)
T ss_pred CceEEeCCCCccHHHHHHHHhhh--ccCce-----EeecCHHHHHHHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCc
Confidence 45789999999999999999994 55554 3332210 011122222222111000 00 0000
Q ss_pred CccCcC---ccccHHHHHHhcCCC--CCCcEEEEEcCchhhhhh--hccCCCcceeeccCCChhhHHHHHHHhhcC
Q 002663 261 DRHAEG---PLEGQKDVEHALLDN--KKCSRIIVTTRHMNVAKF--CKSSSSVRIHELETLPPDEAWKLFCRKAFG 329 (895)
Q Consensus 261 ~~~~~~---~L~~~~~l~~~l~~~--~~gs~iivTTR~~~v~~~--~~~~~~~~~~~l~~L~~~es~~Lf~~~a~~ 329 (895)
...... .-....++...+.+. ..|--||-.|.-.++.+- .....-+...-|..-+.+|-.++++..+-.
T Consensus 619 ~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn 694 (802)
T KOG0733|consen 619 RRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKN 694 (802)
T ss_pred ccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhcc
Confidence 000000 001223333333333 234445555555555432 233333467778888999999999887753
No 481
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=91.00 E-value=0.27 Score=49.71 Aligned_cols=24 Identities=25% Similarity=0.481 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCchhhHHHHHHhcc
Q 002663 194 SSVVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
-.+++|+|..|.|||||++.+..-
T Consensus 11 Ge~~~i~G~nGsGKSTLl~~l~Gl 34 (230)
T TIGR01184 11 GEFISLIGHSGCGKSTLLNLISGL 34 (230)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999983
No 482
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=91.00 E-value=0.16 Score=48.50 Aligned_cols=22 Identities=36% Similarity=0.721 Sum_probs=19.7
Q ss_pred EEEEEcCCCchhhHHHHHHhcc
Q 002663 196 VVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 196 vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
-|+|+|.+|+|||||+..+.+.
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~ 23 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNK 23 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3789999999999999998874
No 483
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=90.99 E-value=0.27 Score=49.05 Aligned_cols=24 Identities=29% Similarity=0.379 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCchhhHHHHHHhcc
Q 002663 194 SSVVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
-.+++|.|..|.|||||++.+...
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03301 26 GEFVVLLGPSGCGKTTTLRMIAGL 49 (213)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999983
No 484
>PRK06921 hypothetical protein; Provisional
Probab=90.99 E-value=0.2 Score=51.61 Aligned_cols=37 Identities=24% Similarity=0.269 Sum_probs=28.7
Q ss_pred ceEEEEEcCCCchhhHHHHHHhccccccCC-CCceEEEEe
Q 002663 194 SSVVAVVGEGGLGKTTLAGKLFNNEGLKTH-FSCRAWVTV 232 (895)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~-F~~~~wv~~ 232 (895)
..-+.++|..|+|||+||.++++. +... ...++|+..
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~--l~~~~g~~v~y~~~ 154 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANE--LMRKKGVPVLYFPF 154 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH--HhhhcCceEEEEEH
Confidence 467899999999999999999994 4433 345567764
No 485
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=90.98 E-value=0.27 Score=49.07 Aligned_cols=34 Identities=29% Similarity=0.318 Sum_probs=26.4
Q ss_pred ceEEEEEcCCCchhhHHHHHHhccccccCCCCceEEE
Q 002663 194 SSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWV 230 (895)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv 230 (895)
-.+++|.|..|.|||||++.++.. .......+++
T Consensus 24 Ge~~~i~G~nGsGKSTLl~~l~G~---~~~~~G~i~~ 57 (213)
T TIGR01277 24 GEIVAIMGPSGAGKSTLLNLIAGF---IEPASGSIKV 57 (213)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC---CCCCCcEEEE
Confidence 469999999999999999999983 2333455554
No 486
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=90.98 E-value=0.27 Score=49.21 Aligned_cols=33 Identities=27% Similarity=0.408 Sum_probs=25.8
Q ss_pred eEEEEEcCCCchhhHHHHHHhccccccCCCCceEEE
Q 002663 195 SVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWV 230 (895)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv 230 (895)
.+++|+|+.|.|||||.|.+.. .-......+.+
T Consensus 31 ~~~~iiGPNGaGKSTLlK~iLG---ll~p~~G~i~~ 63 (254)
T COG1121 31 EITALIGPNGAGKSTLLKAILG---LLKPSSGEIKI 63 (254)
T ss_pred cEEEEECCCCCCHHHHHHHHhC---CCcCCcceEEE
Confidence 6999999999999999999998 33434444443
No 487
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=90.97 E-value=0.14 Score=53.01 Aligned_cols=21 Identities=33% Similarity=0.699 Sum_probs=19.8
Q ss_pred EEEEEcCCCchhhHHHHHHhc
Q 002663 196 VVAVVGEGGLGKTTLAGKLFN 216 (895)
Q Consensus 196 vv~I~G~gGiGKTtLA~~v~~ 216 (895)
+|||.|..|.||||+++.+..
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ 21 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTS 21 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 488
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=90.97 E-value=1.9 Score=45.85 Aligned_cols=128 Identities=16% Similarity=0.111 Sum_probs=64.8
Q ss_pred ceEEEEEcCCCchhhHHHHHHhcccc-----cc---------------CCCCceEEEEeCC----------CCCHHHHHH
Q 002663 194 SSVVAVVGEGGLGKTTLAGKLFNNEG-----LK---------------THFSCRAWVTVGK----------EYNKNDLLR 243 (895)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~-----~~---------------~~F~~~~wv~~~~----------~~~~~~l~~ 243 (895)
.+.+.++|+.|+||||+|+.+....- .. +......++.-.. ...+. -.+
T Consensus 21 ~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id-~iR 99 (325)
T PRK08699 21 PNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKID-AVR 99 (325)
T ss_pred ceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHH-HHH
Confidence 46789999999999999998877411 00 0011122332210 11232 334
Q ss_pred HHHHHHHhccCCCCCCCCc---cCcCccc--cHHHHHHhcCCCCCCcEEEEEcCch-hhhhhhccCCCcceeeccCCChh
Q 002663 244 TIIKEFHRLSKHGRDGPDR---HAEGPLE--GQKDVEHALLDNKKCSRIIVTTRHM-NVAKFCKSSSSVRIHELETLPPD 317 (895)
Q Consensus 244 ~i~~~l~~~~~~~~~~~~~---~~~~~L~--~~~~l~~~l~~~~~gs~iivTTR~~-~v~~~~~~~~~~~~~~l~~L~~~ 317 (895)
.+.+.+...... ..... +..+.+. ....+...+.....+..+|+||.+. .+......- ...+.+.+++.+
T Consensus 100 ~l~~~~~~~p~~--~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SR--c~~~~~~~~~~~ 175 (325)
T PRK08699 100 EIIDNVYLTSVR--GGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSR--CRKMVLPAPSHE 175 (325)
T ss_pred HHHHHHhhCccc--CCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHH--hhhhcCCCCCHH
Confidence 455555433211 00000 1111121 2223333333333445566676664 454433321 268899999999
Q ss_pred hHHHHHHHh
Q 002663 318 EAWKLFCRK 326 (895)
Q Consensus 318 es~~Lf~~~ 326 (895)
+..+.+...
T Consensus 176 ~~~~~L~~~ 184 (325)
T PRK08699 176 EALAYLRER 184 (325)
T ss_pred HHHHHHHhc
Confidence 998888654
No 489
>PLN02165 adenylate isopentenyltransferase
Probab=90.95 E-value=0.18 Score=52.82 Aligned_cols=25 Identities=36% Similarity=0.551 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCchhhHHHHHHhcc
Q 002663 193 KSSVVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
.-.+|+|+|+.|+||||||..++..
T Consensus 42 ~g~iivIiGPTGSGKStLA~~LA~~ 66 (334)
T PLN02165 42 KDKVVVIMGATGSGKSRLSVDLATR 66 (334)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHH
Confidence 3459999999999999999999884
No 490
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=90.95 E-value=0.23 Score=50.32 Aligned_cols=52 Identities=17% Similarity=0.198 Sum_probs=28.6
Q ss_pred EEEEEcCCCchhhHHHHHHhcccc-----ccCCCCceEEEEeCCCCCHHHHHHHHHH
Q 002663 196 VVAVVGEGGLGKTTLAGKLFNNEG-----LKTHFSCRAWVTVGKEYNKNDLLRTIIK 247 (895)
Q Consensus 196 vv~I~G~gGiGKTtLA~~v~~~~~-----~~~~F~~~~wv~~~~~~~~~~l~~~i~~ 247 (895)
+..|+|++|.||||++..+..... ....-...+-+....+..+..++..+.+
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 789999999999976655554310 1133344555555554445555555544
No 491
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.93 E-value=0.27 Score=49.95 Aligned_cols=24 Identities=29% Similarity=0.541 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCchhhHHHHHHhcc
Q 002663 194 SSVVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
-.+++|+|..|.|||||++.+..-
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (235)
T cd03261 26 GEILAIIGPSGSGKSTLLRLIVGL 49 (235)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999983
No 492
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=90.92 E-value=0.29 Score=57.99 Aligned_cols=47 Identities=19% Similarity=0.243 Sum_probs=38.0
Q ss_pred CceeechhhHHHHHHHHhcC-------CCCceEEEEEcCCCchhhHHHHHHhcc
Q 002663 171 DEVVGIESIKDKLIDLMVNG-------RSKSSVVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
..+||-++.++.|.+.+... ......+.++|+.|+|||++|+.+...
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~ 511 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKA 511 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999888632 122457899999999999999999884
No 493
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=90.90 E-value=0.24 Score=54.67 Aligned_cols=39 Identities=38% Similarity=0.376 Sum_probs=26.1
Q ss_pred ceEEEEEcCCCchhhHHHHHHhccccccCCCCceEEEEe
Q 002663 194 SSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTV 232 (895)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~ 232 (895)
.++++++|++|+||||++..++........-..+..|+.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~ 259 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITL 259 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEEC
Confidence 369999999999999988777653110122234556654
No 494
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.89 E-value=0.28 Score=48.96 Aligned_cols=23 Identities=35% Similarity=0.515 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCchhhHHHHHHhc
Q 002663 194 SSVVAVVGEGGLGKTTLAGKLFN 216 (895)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~ 216 (895)
-.+++|+|..|.|||||++.+..
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~G 48 (213)
T cd03259 26 GEFLALLGPSGCGKTTLLRLIAG 48 (213)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 45899999999999999999997
No 495
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=90.89 E-value=0.17 Score=48.38 Aligned_cols=23 Identities=35% Similarity=0.492 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCchhhHHHHHHhc
Q 002663 194 SSVVAVVGEGGLGKTTLAGKLFN 216 (895)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~ 216 (895)
-.+++|+|+.|.|||||.+.+..
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHhh
Confidence 45899999999999999998864
No 496
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=90.88 E-value=0.17 Score=44.51 Aligned_cols=21 Identities=48% Similarity=0.800 Sum_probs=19.2
Q ss_pred EEEEcCCCchhhHHHHHHhcc
Q 002663 197 VAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 197 v~I~G~gGiGKTtLA~~v~~~ 217 (895)
|.+.|.||+||||++..+...
T Consensus 2 i~~~GkgG~GKTt~a~~la~~ 22 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARY 22 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999874
No 497
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=90.88 E-value=0.28 Score=49.78 Aligned_cols=34 Identities=32% Similarity=0.312 Sum_probs=26.1
Q ss_pred ceEEEEEcCCCchhhHHHHHHhccccccCCCCceEEE
Q 002663 194 SSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWV 230 (895)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv 230 (895)
-.+++|+|..|.|||||++.++.- .......+++
T Consensus 35 Ge~~~l~G~nGsGKSTLl~~l~Gl---~~~~~G~i~~ 68 (233)
T PRK11629 35 GEMMAIVGSSGSGKSTLLHLLGGL---DTPTSGDVIF 68 (233)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC---CCCCceEEEE
Confidence 358999999999999999999983 2333455554
No 498
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=90.87 E-value=0.26 Score=53.50 Aligned_cols=50 Identities=26% Similarity=0.458 Sum_probs=36.2
Q ss_pred CCceeechhhH---HHHHHHHhcC-------CCCceEEEEEcCCCchhhHHHHHHhcccc
Q 002663 170 DDEVVGIESIK---DKLIDLMVNG-------RSKSSVVAVVGEGGLGKTTLAGKLFNNEG 219 (895)
Q Consensus 170 ~~~~vGr~~~~---~~l~~~L~~~-------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 219 (895)
-+++-|.|+.+ ++|+++|... ..=.+=|.++|++|.|||-||++|+....
T Consensus 303 F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~ 362 (752)
T KOG0734|consen 303 FEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAG 362 (752)
T ss_pred cccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccC
Confidence 45677887755 5566667643 11235688999999999999999998533
No 499
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.85 E-value=0.27 Score=50.11 Aligned_cols=24 Identities=38% Similarity=0.490 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCchhhHHHHHHhcc
Q 002663 194 SSVVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
-.+++|+|..|.|||||++.+..-
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (239)
T cd03296 28 GELVALLGPSGSGKTTLLRLIAGL 51 (239)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999983
No 500
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=90.84 E-value=0.16 Score=48.61 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCchhhHHHHHHhcc
Q 002663 194 SSVVAVVGEGGLGKTTLAGKLFNN 217 (895)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~ 217 (895)
...|+|+|.+|+|||||.+.+...
T Consensus 14 ~~~v~i~G~~g~GKStLl~~l~~~ 37 (173)
T cd04155 14 EPRILILGLDNAGKTTILKQLASE 37 (173)
T ss_pred ccEEEEEccCCCCHHHHHHHHhcC
Confidence 456999999999999999999874
Done!