Query 002663
Match_columns 895
No_of_seqs 387 out of 4778
Neff 10.0
Searched_HMMs 29240
Date Tue Mar 26 21:24:09 2013
Command hhsearch -i /local_scratch/syshi/lefta3m2/002663.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H2_68-71//hhsearch_pdb/002663hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 1.0 1 1 322.1 15.4 292 174-479 131-473 (549)
2 3sfz_A APAF-1, apoptotic pepti 1.0 1 1 288.4 23.0 290 167-477 120-452 (1249)
3 1vt4_I APAF-1 related killer D 1.0 1 1 266.1 18.7 266 172-470 129-436 (1221)
4 3rgz_A Protein brassinosteroid 1.0 1 1 243.0 13.8 391 492-892 247-734 (768)
5 3rgz_A Protein brassinosteroid 1.0 1 1 238.5 13.7 340 492-845 294-715 (768)
6 4eco_A Uncharacterized protein 1.0 1 1 237.1 10.8 370 490-884 204-634 (636)
7 3vq2_A TLR4, TOLL-like recepto 1.0 1 1 236.3 14.9 130 490-621 30-165 (606)
8 4ecn_A Leucine-rich repeat pro 1.0 1 1 234.0 12.6 320 510-845 444-817 (876)
9 4eco_A Uncharacterized protein 1.0 1 1 228.3 11.8 344 510-878 202-601 (636)
10 1z6t_A APAF-1, apoptotic prote 1.0 1 1 226.7 27.4 279 169-475 122-450 (591)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=1.00 E-value=1 Score=322.09 Aligned_cols=292 Identities=15% Similarity=0.199 Sum_probs=219.5
Q ss_pred EECHHHHHHHHHHHHCC-CCCCEEEEEECCCCCHHHHHHHHHHC--CCCCCCCCCCEEEEEECCCC--CHHHHHHHHHHH
Q ss_conf 00221099999999649-99956999992898225689999742--62666888825899969999--989999999999
Q 002663 174 VGIESIKDKLIDLMVNG-RSKSSVVAVVGEGGLGKTTLAGKLFN--NEGLKTHFSCRAWVTVGKEY--NKNDLLRTIIKE 248 (895)
Q Consensus 174 vG~~~~~~~l~~~L~~~-~~~~~vi~I~G~gGiGKTtLa~~v~~--~~~~~~~F~~~~wv~vs~~~--~~~~l~~~i~~~ 248 (895)
|||++++++|.++|..+ +.+.++|+|+||||+||||||+++|+ +.+++.+|++++||++++.+ +...+++.|+.+
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~ 210 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLM 210 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHH
T ss_conf 78417999999987251578962899986999988999999998406987466995799997898787999999999999
Q ss_pred HHHCCC--CCCCCCCC------C------CC--CCC---C-CHHHHHHHCCCCCCCCEEEEECCCHHHHHHHCCCCCCCE
Q ss_conf 974037--99999986------6------75--741---1-178778830799998089999274244432105998532
Q 002663 249 FHRLSK--HGRDGPDR------H------AE--GPL---E-GQKDVEHALLDNKKCSRIIVTTRHMNVAKFCKSSSSVRI 308 (895)
Q Consensus 249 l~~~~~--~~~~~~~~------~------~~--~~L---~-~~~~i~~~l~~~~~gs~iivTTR~~~v~~~~~~~~~~~~ 308 (895)
++.... ........ . .. ..| + .|+.-...++.. +||+||||||++.++..++.. ..+
T Consensus 211 l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~~~~~~-~gs~ilvTTR~~~v~~~~~~~--~~~ 287 (549)
T 2a5y_B 211 LKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIRWAQE-LRLRCLVTTRDVEISNAASQT--CEF 287 (549)
T ss_dssp HTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHHHHHHH-TTCEEEEEESBGGGGGGCCSC--EEE
T ss_pred HHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHCCCCC-CCCEEEEECCCHHHHHHCCCC--CEE
T ss_conf 85375534555533146999999999997689848999979997144154326-998899974977999970889--738
Q ss_pred EECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHH---------HHHHHHHHHCCCCCCHHHHHHHHHC---CCCHHHHH
Q ss_conf 42569994557999887524999999895468989---------9999975420487887899865504---99907799
Q 002663 309 HELETLPPDEAWKLFCRKAFGPSSGGCCPSELKEF---------FIVALGGLLSTKNRIVSEWKKLFDS---DPHLKDCN 376 (895)
Q Consensus 309 ~~l~~L~~~~s~~Lf~~~a~~~~~~~~~~~~l~~~---------ai~~~~~~l~~~~~~~~~w~~~~~~---~~~~~~~~ 376 (895)
|++++|+.++||+||..+||.........+...++ |++++|+.++.+ .+.|...+.. .....++.
T Consensus 288 ~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~---~w~~~~~l~~~l~~~~~~~i~ 364 (549)
T 2a5y_B 288 IEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK---TFEKMAQLNNKLESRGLVGVE 364 (549)
T ss_dssp EECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS---SHHHHHHHHHHHHHHCSSTTC
T ss_pred EECCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCC---HHHHHHHHHHHHHCCCHHHHH
T ss_conf 98999898999999998744899855689999999999599839999999984434---489998757876136477789
Q ss_pred HHHHCCCCCCCHHHHHHHC-----------CCCCCCCCCCCCHHHHHHHHHHC--CCCCCCC-CCCHHHHHHHHHHHHHH
Q ss_conf 9986012799810456761-----------02458899523422688999984--9411468-87989999999999861
Q 002663 377 RVLSEGYYDLPHHLKSCLL-----------YFGLFPESCKINRGRLIRLWIAE--GFVQYRK-RLTSEQVAAEYLDELID 442 (895)
Q Consensus 377 ~~l~~sy~~L~~~~k~cfl-----------~~a~fp~~~~i~~~~l~~~w~a~--g~i~~~~-~~~~~~~~~~~~~~Lv~ 442 (895)
.++.+||++||.++|.||+ |||+||+++.|+ +++|+|+ ||+.... ....+++++ ++++|++
T Consensus 365 ~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~~~~-~l~~L~~ 439 (549)
T 2a5y_B 365 CITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDEVAD-RLKRLSK 439 (549)
T ss_dssp CCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHHHHH-HHHHTTT
T ss_pred HHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHEEEECCCCEEE----EEEEEEECCCEECCCCCCCCHHHHHH-HHHHHHH
T ss_conf 897516202267999997526522336743235608997666----53311013550026778999999999-9999987
Q ss_pred CCCEEEEECCCCCCEEEEEECHHHHHHHHHHHHHCCC
Q ss_conf 9853210128898146899639999999997500292
Q 002663 443 RSLVQVSNREIPGRAIICQVHDLMHEIIIRKTEELGF 479 (895)
Q Consensus 443 ~~ll~~~~~~~~~~~~~~~~hdli~~~~~~~~~~~~~ 479 (895)
+||++....+ ...+|+|||++|+|++.++.++++
T Consensus 440 rsLl~~~~~~---~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 440 RGALLSGKRM---PVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp BSSCSEEECS---SSCEEECCHHHHHHHHTTSCTHHH
T ss_pred CCCEEEECCC---CCEEEEECHHHHHHHHHHHHHHHH
T ss_conf 5883671479---804999676999999999889899
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=1.00 E-value=1 Score=288.37 Aligned_cols=290 Identities=17% Similarity=0.239 Sum_probs=212.6
Q ss_pred CCCCCCEEECHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHCCCCC-CCCC-CCEEEEEECCCCC--HHHHH
Q ss_conf 778873000221099999999649999569999928982256899997426266-6888-8258999699999--89999
Q 002663 167 FVEDDEVVGIESIKDKLIDLMVNGRSKSSVVAVVGEGGLGKTTLAGKLFNNEGL-KTHF-SCRAWVTVGKEYN--KNDLL 242 (895)
Q Consensus 167 ~~~~~~~vG~~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~F-~~~~wv~vs~~~~--~~~l~ 242 (895)
+.....||||++++++|.++|...+.+.++|+|+||||+||||||+++|++.+. ..+| +.++||++++..+ ....+
T Consensus 120 p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 199 (1249)
T 3sfz_A 120 PQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKL 199 (1249)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHH
T ss_pred CCCCCEECCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHCCHHHHHHHCCCEEEEEEECCCCCHHHHHHH
T ss_conf 99986412579999999999861358877799991898888899999860756788627881799997885726799999
Q ss_pred HHHHHHHHHCCCCCCCCCCC-CC-------------CCCCCCHHHHH--HHCCCCCCCCEEEEECCCHHHHHHHCCCCCC
Q ss_conf 99999997403799999986-67-------------57411178778--8307999980899992742444321059985
Q 002663 243 RTIIKEFHRLSKHGRDGPDR-HA-------------EGPLEGQKDVE--HALLDNKKCSRIIVTTRHMNVAKFCKSSSSV 306 (895)
Q Consensus 243 ~~i~~~l~~~~~~~~~~~~~-~~-------------~~~L~~~~~i~--~~l~~~~~gs~iivTTR~~~v~~~~~~~~~~ 306 (895)
..++..+..........+.. .. ...|-..|++. ..+....+||+||||||++.++..+... .
T Consensus 200 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~~~~~~ilvTtR~~~~~~~~~~~--~ 277 (1249)
T 3sfz_A 200 QNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAFDNQCQILLTTRDKSVTDSVMGP--K 277 (1249)
T ss_dssp HHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTTCSSCEEEEEESSTTTTTTCCSC--B
T ss_pred HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHCCCCEEEEECCCHHHHHHHCCC--C
T ss_conf 99999865530333478877789999999997356787899995679977887636897899992778998763488--4
Q ss_pred CEEECCC-CCHHHHHHHHHHHHCCCCCCCCCCHHHHHH---------HHHHHHHHHCCCCCCHHHHHHHHH---C-----
Q ss_conf 3242569-994557999887524999999895468989---------999997542048788789986550---4-----
Q 002663 307 RIHELET-LPPDEAWKLFCRKAFGPSSGGCCPSELKEF---------FIVALGGLLSTKNRIVSEWKKLFD---S----- 368 (895)
Q Consensus 307 ~~~~l~~-L~~~~s~~Lf~~~a~~~~~~~~~~~~l~~~---------ai~~~~~~l~~~~~~~~~w~~~~~---~----- 368 (895)
..+++.+ |+++++++||...++... ...++...++ ||+.+|+.|+.+.. .|...+. .
T Consensus 278 ~~~~~~~~l~~~~a~~l~~~~~~~~~--~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~~---~~~~~l~~l~~~~~~~ 352 (1249)
T 3sfz_A 278 HVVPVESGLGREKGLEILSLFVNMKK--EDLPAEAHSIIKECKGSPLVVSLIGALLRDFPN---RWAYYLRQLQNKQFKR 352 (1249)
T ss_dssp CCEECCSSCCHHHHHHHHHHHHTSCS--TTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSSS---CHHHHHHHHHSCCCCC
T ss_pred EEEEECCCCCHHHHHHHHHHHHCCCH--HHCCHHHHHHHHHHCCCHHHHHHHHHHHHCCHH---HHHHHHHHHHHHHHHH
T ss_conf 37982588887889999998657981--348388999999849977999999998624805---7999999986504430
Q ss_pred -----CCCHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf -----999077999986012799810456761024588995234226889999849411468879899999999998619
Q 002663 369 -----DPHLKDCNRVLSEGYYDLPHHLKSCLLYFGLFPESCKINRGRLIRLWIAEGFVQYRKRLTSEQVAAEYLDELIDR 443 (895)
Q Consensus 369 -----~~~~~~~~~~l~~sy~~L~~~~k~cfl~~a~fp~~~~i~~~~l~~~w~a~g~i~~~~~~~~~~~~~~~~~~Lv~~ 443 (895)
......+..++.+||+.|+++.|.||+|||+||+++.|++..++.+|.++ ++.++.++.+|+++
T Consensus 353 ~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~-----------~~~~~~~l~~L~~~ 421 (1249)
T 3sfz_A 353 IRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE-----------TEEVEDILQEFVNK 421 (1249)
T ss_dssp SSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC-----------HHHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCEECHHHHHHHHCCC-----------HHHHHHHHHHHHHC
T ss_conf 3465564467799999989986799999999972813799751899999885898-----------88999999999744
Q ss_pred CCEEEEECCCCCCEEEEEECHHHHHHHHHHHHHC
Q ss_conf 8532101288981468996399999999975002
Q 002663 444 SLVQVSNREIPGRAIICQVHDLMHEIIIRKTEEL 477 (895)
Q Consensus 444 ~ll~~~~~~~~~~~~~~~~hdli~~~~~~~~~~~ 477 (895)
+|++... .+...+|+||+++|+|++.++.++
T Consensus 422 sl~~~~~---~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 422 SLLFCNR---NGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp TSCEEEE---SSSSEEEECCHHHHHHHHHHTGGG
T ss_pred CCEEEEC---CCCCEEEEECHHHHHHHHHHHHHH
T ss_conf 6338963---798118996689999987450678
No 3
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=1.00 E-value=1 Score=266.15 Aligned_cols=266 Identities=18% Similarity=0.194 Sum_probs=203.5
Q ss_pred CEEECHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCC-EEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 3000221099999999649999569999928982256899997426266688882-589996999998999999999997
Q 002663 172 EVVGIESIKDKLIDLMVNGRSKSSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSC-RAWVTVGKEYNKNDLLRTIIKEFH 250 (895)
Q Consensus 172 ~~vG~~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~vs~~~~~~~l~~~i~~~l~ 250 (895)
..|||++++++|.++|...+ +.++|+|+||||+||||||+++|++.+++.+|+. ++||++++.++...++..+++.+.
T Consensus 129 ~~VGRe~eLeeL~elL~~~d-~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~ 207 (1221)
T 1vt4_I 129 YNVSRLQPYLKLRQALLELR-PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLY 207 (1221)
T ss_dssp SCCCCHHHHHHHHHHHHHCC-SSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHCCC-CCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 77892899999999974358-97189997699966799999999714988748993899982899999999999999986
Q ss_pred HCCCCCC-CCCC------C-C-------------C-CCC---CC---CHHHHHHHCCCCCCCCEEEEECCCHHHHHHHCC
Q ss_conf 4037999-9998------6-6-------------7-574---11---178778830799998089999274244432105
Q 002663 251 RLSKHGR-DGPD------R-H-------------A-EGP---LE---GQKDVEHALLDNKKCSRIIVTTRHMNVAKFCKS 302 (895)
Q Consensus 251 ~~~~~~~-~~~~------~-~-------------~-~~~---L~---~~~~i~~~l~~~~~gs~iivTTR~~~v~~~~~~ 302 (895)
....... .... . . . ... |+ ..+.+. .++ +||+||||||++.++..+..
T Consensus 208 ~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe-~f~---pGSRILVTTRd~~Va~~l~g 283 (1221)
T 1vt4_I 208 QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWN-AFN---LSCKILLTTRFKQVTDFLSA 283 (1221)
T ss_dssp HHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHH-HHH---SSCCEEEECSCSHHHHHHHH
T ss_pred HCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHH-HHC---CCEEEEEECCCHHHHHHCCC
T ss_conf 22721022001346799999999999999998504788799871868189998-647---98299994437379986689
Q ss_pred CCCCCEEECC------CCCHHHHHHHHHHHHCCCCCCCCCCHHHHHH------HHHHHHHHHCCCCCCHHHHHHHHHCCC
Q ss_conf 9985324256------9994557999887524999999895468989------999997542048788789986550499
Q 002663 303 SSSVRIHELE------TLPPDEAWKLFCRKAFGPSSGGCCPSELKEF------FIVALGGLLSTKNRIVSEWKKLFDSDP 370 (895)
Q Consensus 303 ~~~~~~~~l~------~L~~~~s~~Lf~~~a~~~~~~~~~~~~l~~~------ai~~~~~~l~~~~~~~~~w~~~~~~~~ 370 (895)
. ..|+++ +|+.+|||+||.... +.. ......++ ||+++|+.|+.+..+...|...
T Consensus 284 ~---~vy~LeL~d~dL~LS~eEA~eLF~~~~-g~~----~eeL~~eICgGLPLALkLaGs~Lr~k~~s~eeW~~~----- 350 (1221)
T 1vt4_I 284 A---TTTHISLDHHSMTLTPDEVKSLLLKYL-DCR----PQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHV----- 350 (1221)
T ss_dssp H---SSCEEEECSSSSCCCHHHHHHHHHHHH-CCC----TTTHHHHHCCCCHHHHHHHHHHHHHSCSSHHHHHHC-----
T ss_pred C---EEEEECCCCCCCCCCHHHHHHHHHHHC-CCC----HHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHCC-----
T ss_conf 7---089946865568969999999999974-998----899999996989999999999984889979998669-----
Q ss_pred CHHHHHHHHHCCCCCCCHHH-HHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEE
Q ss_conf 90779999860127998104-56761024588995234226889999849411468879899999999998619853210
Q 002663 371 HLKDCNRVLSEGYYDLPHHL-KSCLLYFGLFPESCKINRGRLIRLWIAEGFVQYRKRLTSEQVAAEYLDELIDRSLVQVS 449 (895)
Q Consensus 371 ~~~~~~~~l~~sy~~L~~~~-k~cfl~~a~fp~~~~i~~~~l~~~w~a~g~i~~~~~~~~~~~~~~~~~~Lv~~~ll~~~ 449 (895)
....+..++.+||+.||++. |.||+|||+||+++.|+...++.+|+++| ++.+..++++|+++||++..
T Consensus 351 ~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG----------eedAe~~L~eLvdRSLLq~d 420 (1221)
T 1vt4_I 351 NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI----------KSDVMVVVNKLHKYSLVEKQ 420 (1221)
T ss_dssp SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC----------SHHHHHHHHHHHTSSSSSBC
T ss_pred CHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCC----------HHHHHHHHHHHHHHCCEEEE
T ss_conf 86189999999998488999999999971779999877999998766778----------89999999999961988986
Q ss_pred ECCCCCCEEEEEECHHHHHHH
Q ss_conf 128898146899639999999
Q 002663 450 NREIPGRAIICQVHDLMHEII 470 (895)
Q Consensus 450 ~~~~~~~~~~~~~hdli~~~~ 470 (895)
. ....|+|||+++++.
T Consensus 421 ~-----~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 421 P-----KESTISIPSIYLELK 436 (1221)
T ss_dssp S-----SSSEEBCCCHHHHHH
T ss_pred C-----CCCEEEEHHHHHHHH
T ss_conf 8-----999898609999985
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=243.03 Aligned_cols=391 Identities=17% Similarity=0.145 Sum_probs=244.6
Q ss_pred CCCEEEEEECCCCCCCCCCCCCCCEEEEEEECCCCCCCCCHHCCCCCCCEEEEEECCCCCCC-CCCCCCCCCCCCCEEEE
Q ss_conf 98317999526885533336885112999981689996200000278730239962899998-67523456668775742
Q 002663 492 SKTRRITIQRSIDDGALESIKDWKVRSVILFNVDKLPDSFMKSCIANFKLMKVLDLEDSPIN-YLPEGVGNLFNLHLLNA 570 (895)
Q Consensus 492 ~~~r~l~l~~~~~~~~~~~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~-~l~~~i~~l~~Lr~L~L 570 (895)
...+.+.+..+...........++++.|.+.++.. ....+..++..+++|++|++++|.+. .+|..++.+++|++|++
T Consensus 247 ~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l-~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 325 (768)
T 3rgz_A 247 TELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKF-TGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLAL 325 (768)
T ss_dssp SSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEE-EESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEEC
T ss_pred CCCCEEECCCCCCCCCCCCCCCCCCCEEECCCCCC-CCCCCHHHHHHCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEEC
T ss_conf 88898989888665716724368789897917855-77258888844686889989689677842367755877667789
Q ss_pred CCCCCC-CCCCC-CCCCCCCCEEECCCCCCC-CCCHHHHCCC-CCCEEEEECCCCCCCCC---------------CCC-C
Q ss_conf 588753-24513-268689969982763352-0363110344-47868730200234555---------------564-3
Q 002663 571 RNTKLK-IIPKS-IGNLLSLEILVLARTFVS-ELPEEIRNLK-KLRSLIVFHYKYITGSI---------------IPT-E 630 (895)
Q Consensus 571 ~~~~i~-~lp~~-i~~L~~L~~L~l~~~~l~-~lp~~i~~l~-~L~~L~l~~~~~~~~~~---------------~~~-~ 630 (895)
+++.+. .+|.. +.++++|++|++++|.+. .+|..+..++ +|+.|++++|....... ... .
T Consensus 326 ~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~ 405 (768)
T 3rgz_A 326 SSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNG 405 (768)
T ss_dssp CSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSE
T ss_pred CCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHHHHCCCCEEECCCCCCCCCCCHHHHHCCCCCCCEEECCCCC
T ss_conf 78852573797887248888788484784376230989863227719986278747876766653324776189897784
Q ss_pred CCCCCCCCCCCCCCCEEEEEEEC--CHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHCCCCCCEEEEEECCCCCCCCC
Q ss_conf 11012464467554207854516--9687998204635848899825898504899852148977789971585311235
Q 002663 631 VAAKIHRGFGSLRGLLVLSTIEA--DSQVLKELMMLRQLRMLSIRPQNGNGRDLCALIANLENVETLGVLMTSKEEILDL 708 (895)
Q Consensus 631 ~~~~~p~~i~~l~~L~~L~~~~~--~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~l 708 (895)
....+|..++.+++|+.|.+..+ ....+..+..+++|+.|++..|.... ..+..+..+++|+.|.+.+|..... +
T Consensus 406 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~L~L~~N~l~~~--~ 482 (768)
T 3rgz_A 406 FTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEG-EIPQELMYVKTLETLILDFNDLTGE--I 482 (768)
T ss_dssp EEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCS-CCCGGGGGCTTCCEEECCSSCCCSC--C
T ss_pred CCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCC-CCCHHHCCCCCCEEEEECCCCCCCC--C
T ss_conf 654248777568987989895884668546777449988989897881547-1897882877732999019951375--8
Q ss_pred CCCCCCCCCCCEEEEECCC--CCCCCCCCCCCCCCEEEEEECCCCCCCHHHHCCCCCCCCEEECCCCCCCEEE-------
Q ss_conf 6676778674379971027--9899100068885517998416787611331168644633511556888179-------
Q 002663 709 QSLSSPPQHLRYLSLRGNM--KKLPDWILKLKNLIGLRLILSGLTEDPISILQALPNLLELMLHGGYDYELFH------- 779 (895)
Q Consensus 709 ~~~~~~~~~L~~L~l~~~~--~~~p~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~------- 779 (895)
+......++|+.|++++|. +.+|.+++.+++|+.|++++|.+.+..+..++.+++|+.|++++|.....++
T Consensus 483 p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~ 562 (768)
T 3rgz_A 483 PSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQS 562 (768)
T ss_dssp CGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTT
T ss_pred CHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCHHHHCCC
T ss_conf 87881699899897539951896876885689999898978943374887770889899898988846882795786042
Q ss_pred ---------------------------------------------------------------EECCCCCCCCEEEECCC
Q ss_conf ---------------------------------------------------------------90598844555561237
Q 002663 780 ---------------------------------------------------------------FEAGWFPKLRKLVLLNF 796 (895)
Q Consensus 780 ---------------------------------------------------------------~~~~~~~~L~~L~l~~~ 796 (895)
...+.+++|+.|++++|
T Consensus 563 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N 642 (768)
T 3rgz_A 563 GKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYN 642 (768)
T ss_dssp TCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSS
T ss_pred CHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCEECCCCCHHHHCCCCCCEEECCCC
T ss_conf 12232013454211113444322223322210013556323200232110011331004627433403356657978588
Q ss_pred CCCEEEEECCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHCCCCCCEEEEECCCCCEEEEEEECCEE
Q ss_conf 98504699269554644688815899765673126564685799980704330223354117823478279999838820
Q 002663 797 EAVKLVIIEKGAMPDIRELWSGPCPLLMEIPIGIEHLRNLELFTFHDMSKQVCCMTKNEKWEVTEHIPDVRVTYIDAGQL 876 (895)
Q Consensus 797 ~~l~~~~~~~~~~~~L~~L~l~~c~~l~~ip~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~i~~~~p~L~~l~l~~~~i 876 (895)
.....+|...+.+++|+.|++++|.....+|..+..+++|+.|++++|. +....-..+ ..++.|+.+.+..|.+
T Consensus 643 ~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~-----l~g~ip~~l-~~l~~L~~L~ls~N~l 716 (768)
T 3rgz_A 643 MLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNK-----LDGRIPQAM-SALTMLTEIDLSNNNL 716 (768)
T ss_dssp CCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC-----CEECCCGGG-GGCCCCSEEECCSSEE
T ss_pred CCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCC-----CCCCCCHHH-HCCCCCCEEECCCCCC
T ss_conf 0155587788414157878486880388789678477789989897880-----238688677-5788789787968815
Q ss_pred CCC-CHHH-HCCCCCCCE
Q ss_conf 025-1012-302342110
Q 002663 877 FYC-PKKV-LSSLSCRFR 892 (895)
Q Consensus 877 ~~c-p~l~-~~~l~~~~~ 892 (895)
.+. |... +.+++...+
T Consensus 717 ~g~iP~~~~~~~~~~~~~ 734 (768)
T 3rgz_A 717 SGPIPEMGQFETFPPAKF 734 (768)
T ss_dssp EEECCSSSSGGGSCGGGG
T ss_pred CCCCCCCHHHCCCCHHHH
T ss_conf 560899601024897775
No 5
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=238.55 Aligned_cols=340 Identities=18% Similarity=0.139 Sum_probs=228.0
Q ss_pred CCCEEEEEECCCCC--CCCCCCCCCCEEEEEEECCCCCCCCCHHCCCCCCCEEEEEECCCCCCC-CCCCCCCCCC-CCCE
Q ss_conf 98317999526885--533336885112999981689996200000278730239962899998-6752345666-8775
Q 002663 492 SKTRRITIQRSIDD--GALESIKDWKVRSVILFNVDKLPDSFMKSCIANFKLMKVLDLEDSPIN-YLPEGVGNLF-NLHL 567 (895)
Q Consensus 492 ~~~r~l~l~~~~~~--~~~~~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~-~l~~~i~~l~-~Lr~ 567 (895)
...+++.+..+... .+.....+++++.|.+.++.. ....+...+.++++|++|++++|.+. .+|..+..+. +|++
T Consensus 294 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l-~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~ 372 (768)
T 3rgz_A 294 DTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNF-SGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLT 372 (768)
T ss_dssp TTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEE-EEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSE
T ss_pred CCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCC-CCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHHHHCCCCE
T ss_conf 8688998968967784236775587766778978852-573797887248888788484784376230989863227719
Q ss_pred EEECCCCCC-CCCCCCCC--CCCCCEEECCCCCCC-CCCHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 742588753-24513268--689969982763352-03631103444786873020023455556431101246446755
Q 002663 568 LNARNTKLK-IIPKSIGN--LLSLEILVLARTFVS-ELPEEIRNLKKLRSLIVFHYKYITGSIIPTEVAAKIHRGFGSLR 643 (895)
Q Consensus 568 L~L~~~~i~-~lp~~i~~--L~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~p~~i~~l~ 643 (895)
|+++++.+. .+|..+.. +.+|++|++++|.+. .+|..+..+++|+.|++++|. .....|..++.++
T Consensus 373 L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~----------l~~~~p~~l~~l~ 442 (768)
T 3rgz_A 373 LDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNY----------LSGTIPSSLGSLS 442 (768)
T ss_dssp EECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSE----------EESCCCGGGGGCT
T ss_pred EECCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCC----------CCCCCCHHHHCCC
T ss_conf 986278747876766653324776189897784654248777568987989895884----------6685467774499
Q ss_pred CCEEEEEEEC--CHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 4207854516--96879982046358488998258985048998521489777899715853112356676778674379
Q 002663 644 GLLVLSTIEA--DSQVLKELMMLRQLRMLSIRPQNGNGRDLCALIANLENVETLGVLMTSKEEILDLQSLSSPPQHLRYL 721 (895)
Q Consensus 644 ~L~~L~~~~~--~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L 721 (895)
+|+.|.+..+ ....+..+..+++|+.|++..|.... ..+..+..+++|+.|.+.+|..... ++......++|+.|
T Consensus 443 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~-~~p~~l~~l~~L~~L~L~~N~l~~~--~p~~~~~l~~L~~L 519 (768)
T 3rgz_A 443 KLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTG-EIPSGLSNCTNLNWISLSNNRLTGE--IPKWIGRLENLAIL 519 (768)
T ss_dssp TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCS-CCCGGGGGCTTCCEEECCSSCCCSC--CCGGGGGCTTCCEE
T ss_pred CCCEEECCCCCCCCCCCHHHCCCCCCEEEEECCCCCCC-CCCHHHHCCCCCCEEECCCCCCCCC--CCHHHHCCCCCCEE
T ss_conf 88989897881547189788287773299901995137-5887881699899897539951896--87688568999989
Q ss_pred EEECCC--CCCCCCCCCCCCCCEEEEEECCCCCCCHH-------------------------------------------
Q ss_conf 971027--98991000688855179984167876113-------------------------------------------
Q 002663 722 SLRGNM--KKLPDWILKLKNLIGLRLILSGLTEDPIS------------------------------------------- 756 (895)
Q Consensus 722 ~l~~~~--~~~p~~~~~l~~L~~L~L~~~~l~~~~~~------------------------------------------- 756 (895)
++++|. +..|..+..+++|+.|++++|.+.+..+.
T Consensus 520 ~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 599 (768)
T 3rgz_A 520 KLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGI 599 (768)
T ss_dssp ECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTC
T ss_pred ECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 89789433748877708898998989888468827957860421223201345421111344432222332221001355
Q ss_pred ---------------------------HHCCCCCCCCEEECCCCCCCEEEEECCCCCCCCEEEECCCCCCEEEEECCCCC
Q ss_conf ---------------------------31168644633511556888179905988445555612379850469926955
Q 002663 757 ---------------------------ILQALPNLLELMLHGGYDYELFHFEAGWFPKLRKLVLLNFEAVKLVIIEKGAM 809 (895)
Q Consensus 757 ---------------------------~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 809 (895)
.++.+++|+.|++++|.....++...+.+++|+.|++++|.....+|...+.+
T Consensus 600 ~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L 679 (768)
T 3rgz_A 600 RSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDL 679 (768)
T ss_dssp CGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGC
T ss_pred CCHHHHCCCCCCCCCCCCCEECCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCC
T ss_conf 63232002321100113310046274334033566579785880155587788414157878486880388789678477
Q ss_pred CCCCEEEECCCCCCCCCCCCCCCCCCCCEEEEECCH
Q ss_conf 464468881589976567312656468579998070
Q 002663 810 PDIRELWSGPCPLLMEIPIGIEHLRNLELFTFHDMS 845 (895)
Q Consensus 810 ~~L~~L~l~~c~~l~~ip~~l~~l~~L~~L~l~~~~ 845 (895)
++|+.|++++|.....+|..+..+++|+.|++++|+
T Consensus 680 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~ 715 (768)
T 3rgz_A 680 RGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNN 715 (768)
T ss_dssp TTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSE
T ss_pred CCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCC
T ss_conf 789989897880238688677578878978796881
No 6
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=1.00 E-value=1 Score=237.14 Aligned_cols=370 Identities=15% Similarity=0.119 Sum_probs=211.7
Q ss_pred CCCCCEEEEEECCCCCC------------------CC-CCC--CCCCEEEEEEECCCCCCCCCHHCCCCCCCEEEEEECC
Q ss_conf 89983179995268855------------------33-336--8851129999816899962000002787302399628
Q 002663 490 HCSKTRRITIQRSIDDG------------------AL-ESI--KDWKVRSVILFNVDKLPDSFMKSCIANFKLMKVLDLE 548 (895)
Q Consensus 490 ~~~~~r~l~l~~~~~~~------------------~~-~~~--~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~ 548 (895)
.....+.+.+..+.... .+ ... .+++++.|.+.++... ...+..+.++++|++|+++
T Consensus 204 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~--~~~p~~l~~l~~L~~L~Ls 281 (636)
T 4eco_A 204 RLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNL--TKLPTFLKALPEMQLINVA 281 (636)
T ss_dssp GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTC--SSCCTTTTTCSSCCEEECT
T ss_pred CCCCCCEEECCCCCCCCCCCCCCCCCCCCCHHCCCCCHHHHHCCCCCCCEEEECCCCCC--CCCHHHHHCCCCCCEEECC
T ss_conf 56478789886882366423221222221001024863220044687888980488577--6283888349997889784
Q ss_pred CCC-CC--CCCCCCCCC------CCCCEEEECCCCCCCCCC--CCCCCCCCCEEECCCCCCC-CCCHHHHCCCCCCEEEE
Q ss_conf 999-98--675234566------687757425887532451--3268689969982763352-03631103444786873
Q 002663 549 DSP-IN--YLPEGVGNL------FNLHLLNARNTKLKIIPK--SIGNLLSLEILVLARTFVS-ELPEEIRNLKKLRSLIV 616 (895)
Q Consensus 549 ~~~-~~--~l~~~i~~l------~~Lr~L~L~~~~i~~lp~--~i~~L~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~l 616 (895)
+|. ++ .+|..++.+ ++|++|+++++.+..+|. .++++.+|++|++++|.+. .+| .+..+++|+.|++
T Consensus 282 ~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L 360 (636)
T 4eco_A 282 CNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNL 360 (636)
T ss_dssp TCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEEC
T ss_pred CCCCCCCCCCHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCHH-HHCCCCCCCEEEC
T ss_conf 798876653357887543046578888898979937766765554257888989690880705166-6478898898989
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCCCCCCC-CEEEEEEECCH-HHHHHHHCC--CCCCEEEEEECCCCCCHHHHHHH-----
Q ss_conf 0200234555564311012464467554-20785451696-879982046--35848899825898504899852-----
Q 002663 617 FHYKYITGSIIPTEVAAKIHRGFGSLRG-LLVLSTIEADS-QVLKELMML--RQLRMLSIRPQNGNGRDLCALIA----- 687 (895)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~p~~i~~l~~-L~~L~~~~~~~-~~~~~l~~l--~~L~~L~l~~~~~~~~~l~~~l~----- 687 (895)
++| ....+|..+..+++ |+.|.+..+.. ..+..+..+ ++|+.|+++.|.... ..+..+.
T Consensus 361 ~~N-----------~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~-~~p~~l~~~~~~ 428 (636)
T 4eco_A 361 AYN-----------QITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGS-VDGKNFDPLDPT 428 (636)
T ss_dssp CSS-----------EEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTT-TTTCSSCTTCSS
T ss_pred CCC-----------CCCCCCHHHHHHCCCCCEEECCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCC-CCHHHHCCCCCC
T ss_conf 899-----------40303375651023686898529827544665533345766889774885788-652442002201
Q ss_pred --CCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCC-CCCCCCCCC--------CCCCCEEEEEECCCCCCCHH
Q ss_conf --1489777899715853112356676778674379971027-989910006--------88855179984167876113
Q 002663 688 --NLENVETLGVLMTSKEEILDLQSLSSPPQHLRYLSLRGNM-KKLPDWILK--------LKNLIGLRLILSGLTEDPIS 756 (895)
Q Consensus 688 --~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~p~~~~~--------l~~L~~L~L~~~~l~~~~~~ 756 (895)
.+++|+.|.+.++.....+ .......++|+.|++++|. ..+|..... +++|+.|++++|.+. ..+.
T Consensus 429 ~~~~~~L~~L~Ls~N~l~~lp--~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~ 505 (636)
T 4eco_A 429 PFKGINVSSINLSNNQISKFP--KELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSD 505 (636)
T ss_dssp CCCCCCEEEEECCSSCCCSCC--THHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCG
T ss_pred CCCCCCCCEEECCCCCCCCCC--HHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCCCCCCCCEEECCCCCCC-CCCH
T ss_conf 125898888977279668678--7887158988989897997887397884044001221477338989699388-1685
Q ss_pred HHC--CCCCCCCEEECCCCCCCEEEEECCCCCCCCEEEECC------CCCCEEEEECCCCCCCCCEEEECCCCCCCCCCC
Q ss_conf 311--686446335115568881799059884455556123------798504699269554644688815899765673
Q 002663 757 ILQ--ALPNLLELMLHGGYDYELFHFEAGWFPKLRKLVLLN------FEAVKLVIIEKGAMPDIRELWSGPCPLLMEIPI 828 (895)
Q Consensus 757 ~l~--~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~------~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~ip~ 828 (895)
.+. .+++|+.|++++|.+.. ++.....+++|+.|++++ |.....+|.....+++|+.|++++|.. +.+|.
T Consensus 506 ~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~ 583 (636)
T 4eco_A 506 DFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNE 583 (636)
T ss_dssp GGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCS
T ss_pred HHHHCCCCCCCEEECCCCCCCC-CCHHHHCCCCCCEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEECCCCCC-CCCCH
T ss_conf 4534458876989898998877-682353088878788988866566731212737785699878898989947-70597
Q ss_pred CCCCCCCCCEEEEECCHHHHHCCCCCCEEEEECCCCCEEEEEEECCEECCCCHHHH
Q ss_conf 12656468579998070433022335411782347827999983882002510123
Q 002663 829 GIEHLRNLELFTFHDMSKQVCCMTKNEKWEVTEHIPDVRVTYIDAGQLFYCPKKVL 884 (895)
Q Consensus 829 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~i~~~~p~L~~l~l~~~~i~~cp~l~~ 884 (895)
.+. ++|+.|++++|+.....+.. -...+ ........+.....+++||.+.+
T Consensus 584 ~~~--~~L~~L~Ls~N~l~~~~~~~-~~~~~--~~~~~~l~~~~~~~i~~C~~L~~ 634 (636)
T 4eco_A 584 KIT--PNISVLDIKDNPNISIDLSY-VCPYI--EAGMYMLFYDKTQDIRGCDALDI 634 (636)
T ss_dssp CCC--TTCCEEECCSCTTCEEECTT-THHHH--HTTCCEEECCTTSEEESCGGGCC
T ss_pred HHH--CCCCEEECCCCCCCCCCHHH-CCHHH--HCCCCEEECCCCCCCCCCCCCCC
T ss_conf 683--86789987699876336786-20112--26610034377543479861102
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=1.00 E-value=1 Score=236.28 Aligned_cols=130 Identities=22% Similarity=0.202 Sum_probs=94.8
Q ss_pred CCCCCEEEEEECCCCCCCC--CCCCCCCEEEEEEECCCCCCCCCHHCCCCCCCEEEEEECCCCCCCCC-CCCCCCCCCCC
Q ss_conf 8998317999526885533--33688511299998168999620000027873023996289999867-52345666877
Q 002663 490 HCSKTRRITIQRSIDDGAL--ESIKDWKVRSVILFNVDKLPDSFMKSCIANFKLMKVLDLEDSPINYL-PEGVGNLFNLH 566 (895)
Q Consensus 490 ~~~~~r~l~l~~~~~~~~~--~~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~l-~~~i~~l~~Lr 566 (895)
.+..++++.+.++...... ....+++++.|.+.++.. ....+..|.++++|++|++++|.++.+ |..++.+++|+
T Consensus 30 ~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l--~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 107 (606)
T 3vq2_A 30 IPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEI--ETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLE 107 (606)
T ss_dssp SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCC--CEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCC
T ss_pred CCCCCCEEECCCCCCCEECHHHCCCCCCCCEEECCCCCC--CCCCHHHHHCHHHCCEEECCCCCCCCCCHHHCCCCCCCC
T ss_conf 888767887888975773754555776674886887736--643977730601068867879856304852207865378
Q ss_pred EEEECCCCCCCCC-CCCCCCCCCCEEECCCCCCC--CCCHHHHCCCCCCEEEEECCCC
Q ss_conf 5742588753245-13268689969982763352--0363110344478687302002
Q 002663 567 LLNARNTKLKIIP-KSIGNLLSLEILVLARTFVS--ELPEEIRNLKKLRSLIVFHYKY 621 (895)
Q Consensus 567 ~L~L~~~~i~~lp-~~i~~L~~L~~L~l~~~~l~--~lp~~i~~l~~L~~L~l~~~~~ 621 (895)
+|+++++.+..+| ..++++.+|++|++++|.+. .+|..+..+++|++|++++|..
T Consensus 108 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l 165 (606)
T 3vq2_A 108 NLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYI 165 (606)
T ss_dssp EEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCC
T ss_pred EEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCEECHHHHHHCCCCCEEECCCCCC
T ss_conf 8870377555445113489887798968788523253068673267777887668853
No 8
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=1.00 E-value=1 Score=234.02 Aligned_cols=320 Identities=14% Similarity=0.111 Sum_probs=173.9
Q ss_pred CCCCCCEEEEEEECCCCCCCC---------------CHHCCCC--CCCEEEEEECCCCCCC-CCCCCCCCCCCCCEEEEC
Q ss_conf 368851129999816899962---------------0000027--8730239962899998-675234566687757425
Q 002663 510 SIKDWKVRSVILFNVDKLPDS---------------FMKSCIA--NFKLMKVLDLEDSPIN-YLPEGVGNLFNLHLLNAR 571 (895)
Q Consensus 510 ~~~~~~lr~l~~~~~~~~~~~---------------~~~~~~~--~~~~Lr~L~L~~~~~~-~l~~~i~~l~~Lr~L~L~ 571 (895)
...+++++.|.+.++...... ..+..+. ++++|++|+|++|.+. .+|..++++++|++|+++
T Consensus 444 l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls 523 (876)
T 4ecn_A 444 IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIA 523 (876)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECT
T ss_pred HHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECC
T ss_conf 75699987897968867887465322332222224458744402559997789871898875273877379998999896
Q ss_pred CCC-CCC--CCCCCCCCC-------CCCEEECCCCCCCCCCH--HHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 887-532--451326868-------99699827633520363--110344478687302002345555643110124644
Q 002663 572 NTK-LKI--IPKSIGNLL-------SLEILVLARTFVSELPE--EIRNLKKLRSLIVFHYKYITGSIIPTEVAAKIHRGF 639 (895)
Q Consensus 572 ~~~-i~~--lp~~i~~L~-------~L~~L~l~~~~l~~lp~--~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~p~~i 639 (895)
+|. +.. +|..++++. +|++|++++|.+..+|. .+..+++|+.|++++|. ...+| .+
T Consensus 524 ~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~-----------l~~lp-~~ 591 (876)
T 4ecn_A 524 CNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNK-----------VRHLE-AF 591 (876)
T ss_dssp TCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSC-----------CCBCC-CC
T ss_pred CCCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCHHHHHCCCCCCEEECCCCC-----------CCCCH-HH
T ss_conf 8987656646177875233015568831998228947761872355158988989897998-----------25621-22
Q ss_pred CCCCCCEEEEEEECCH-HHHHHHHCCCC-CCEEEEEECCCCCCHHHHHHHCCC--CCCEEEEEECCCCCCC-CCCC-C-C
Q ss_conf 6755420785451696-87998204635-848899825898504899852148--9777899715853112-3566-7-6
Q 002663 640 GSLRGLLVLSTIEADS-QVLKELMMLRQ-LRMLSIRPQNGNGRDLCALIANLE--NVETLGVLMTSKEEIL-DLQS-L-S 712 (895)
Q Consensus 640 ~~l~~L~~L~~~~~~~-~~~~~l~~l~~-L~~L~l~~~~~~~~~l~~~l~~~~--~L~~L~l~~~~~~~~~-~l~~-~-~ 712 (895)
+.+++|+.|.+..+.. ..+..+..+++ |+.|+++.|.+. .++..+...+ +|+.|.+.+|...... .+.. . .
T Consensus 592 ~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~--~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~ 669 (876)
T 4ecn_A 592 GTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK--YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDD 669 (876)
T ss_dssp CTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCC--SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTT
T ss_pred CCCCCCEEEECCCCCCCCCHHHHHHCCCCCCEEECCCCCCC--CCCHHHHCCCCCCCCEEECCCCCCCCCCCCCHHHHCC
T ss_conf 47985007987187125035877525114989998499787--4764452255677788977088478864320000001
Q ss_pred CCCCCCCEEEEECCC-CCCCCCCC-CCCCCCEEEEEECCCCCCCHHHHC-------CCCCCCCEEECCCCCCCEEEEECC
Q ss_conf 778674379971027-98991000-688855179984167876113311-------686446335115568881799059
Q 002663 713 SPPQHLRYLSLRGNM-KKLPDWIL-KLKNLIGLRLILSGLTEDPISILQ-------ALPNLLELMLHGGYDYELFHFEAG 783 (895)
Q Consensus 713 ~~~~~L~~L~l~~~~-~~~p~~~~-~l~~L~~L~L~~~~l~~~~~~~l~-------~l~~L~~L~L~~~~~~~~~~~~~~ 783 (895)
...++|+.|++++|. ..+|.++. .+++|+.|+|++|.+...+...+. ++++|+.|+|++|.+. .++....
T Consensus 670 ~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~ 748 (876)
T 4ecn_A 670 YKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFR 748 (876)
T ss_dssp CCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGS
T ss_pred CCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCCCCCCCCEEECCCCCCC-CCHHHHH
T ss_conf 357976889831996886597887138988999898996885496784555334321487158988899786-6527762
Q ss_pred --CCCCCCEEEECCCCCCEEEEECCCCCCCCCEEEECC------CCCCCCCCCCCCCCCCCCEEEEECCH
Q ss_conf --884455556123798504699269554644688815------89976567312656468579998070
Q 002663 784 --WFPKLRKLVLLNFEAVKLVIIEKGAMPDIRELWSGP------CPLLMEIPIGIEHLRNLELFTFHDMS 845 (895)
Q Consensus 784 --~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~------c~~l~~ip~~l~~l~~L~~L~l~~~~ 845 (895)
.+++|+.|++++|. +..+|.....+++|+.|++++ |.....+|..+.++++|+.|++++|.
T Consensus 749 ~~~l~~L~~L~Ls~N~-L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~ 817 (876)
T 4ecn_A 749 ATTLPYLSNMDVSYNC-FSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSND 817 (876)
T ss_dssp TTTCTTCCEEECCSSC-CSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC
T ss_pred HCCCCCCCEEEECCCC-CCCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEECCCCC
T ss_conf 4427986989908997-87610566159998899887997766563244486888369987889887997
No 9
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=1.00 E-value=1 Score=228.25 Aligned_cols=344 Identities=15% Similarity=0.128 Sum_probs=219.1
Q ss_pred CCCCCCEEEEEEECCCCCCCC----------------CHHCCCC--CCCEEEEEECCCCCCC-CCCCCCCCCCCCCEEEE
Q ss_conf 368851129999816899962----------------0000027--8730239962899998-67523456668775742
Q 002663 510 SIKDWKVRSVILFNVDKLPDS----------------FMKSCIA--NFKLMKVLDLEDSPIN-YLPEGVGNLFNLHLLNA 570 (895)
Q Consensus 510 ~~~~~~lr~l~~~~~~~~~~~----------------~~~~~~~--~~~~Lr~L~L~~~~~~-~l~~~i~~l~~Lr~L~L 570 (895)
...+++++.|.+.++.. ... ..+..+. ++++|++|++++|.+. .+|..++++++|++|++
T Consensus 202 l~~l~~L~~L~Ls~n~l-~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 280 (636)
T 4eco_A 202 VMRLTKLRQFYMGNSPF-VAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINV 280 (636)
T ss_dssp GGGCTTCCEEEEESCCC-CGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEEC
T ss_pred HHCCCCCCEEECCCCCC-CCCCCCCCCCCCCCCHHCCCCCHHHHHCCCCCCCEEEECCCCCCCCCHHHHHCCCCCCEEEC
T ss_conf 72564787898868823-66423221222221001024863220044687888980488577628388834999788978
Q ss_pred CCCC-CC--CCCCCCCCC------CCCCEEECCCCCCCCCCH--HHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 5887-53--245132686------899699827633520363--110344478687302002345555643110124644
Q 002663 571 RNTK-LK--IIPKSIGNL------LSLEILVLARTFVSELPE--EIRNLKKLRSLIVFHYKYITGSIIPTEVAAKIHRGF 639 (895)
Q Consensus 571 ~~~~-i~--~lp~~i~~L------~~L~~L~l~~~~l~~lp~--~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~p~~i 639 (895)
+++. ++ .+|..++++ .+|++|++++|.+..+|. .+..+++|++|++++|.. ...+| .+
T Consensus 281 s~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l----------~g~ip-~~ 349 (636)
T 4eco_A 281 ACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQL----------EGKLP-AF 349 (636)
T ss_dssp TTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCC----------EEECC-CC
T ss_pred CCCCCCCCCCCHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCC----------CCCHH-HH
T ss_conf 47988766533578875430465788888989799377667655542578889896908807----------05166-64
Q ss_pred CCCCCCEEEEEEECCH-HHHHHHHCCCC-CCEEEEEECCCCCCHHHHHHHCC--CCCCEEEEEECCCCCCC--CCC---C
Q ss_conf 6755420785451696-87998204635-84889982589850489985214--89777899715853112--356---6
Q 002663 640 GSLRGLLVLSTIEADS-QVLKELMMLRQ-LRMLSIRPQNGNGRDLCALIANL--ENVETLGVLMTSKEEIL--DLQ---S 710 (895)
Q Consensus 640 ~~l~~L~~L~~~~~~~-~~~~~l~~l~~-L~~L~l~~~~~~~~~l~~~l~~~--~~L~~L~l~~~~~~~~~--~l~---~ 710 (895)
+.+++|+.|.+..+.. ..+..+..+++ |+.|+++.|.... ++..+... ++|+.|.+..+...... .+. .
T Consensus 350 ~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~--lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~ 427 (636)
T 4eco_A 350 GSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKY--IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDP 427 (636)
T ss_dssp EEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSS--CCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCS
T ss_pred CCCCCCCEEECCCCCCCCCCHHHHHHCCCCCEEECCCCCCCC--CCHHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCC
T ss_conf 788988989898994030337565102368689852982754--466553334576688977488578865244200220
Q ss_pred CCCCCCCCCEEEEECCC-CCCCCCCC-CCCCCCEEEEEECCCCCCCHHHHCCC-------CCCCCEEECCCCCCCEEEEE
Q ss_conf 76778674379971027-98991000-68885517998416787611331168-------64463351155688817990
Q 002663 711 LSSPPQHLRYLSLRGNM-KKLPDWIL-KLKNLIGLRLILSGLTEDPISILQAL-------PNLLELMLHGGYDYELFHFE 781 (895)
Q Consensus 711 ~~~~~~~L~~L~l~~~~-~~~p~~~~-~l~~L~~L~L~~~~l~~~~~~~l~~l-------~~L~~L~L~~~~~~~~~~~~ 781 (895)
.....++|+.|++++|. ..+|..+. .+++|+.|++++|.+...+...+... ++|+.|++++|.+. .++..
T Consensus 428 ~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~ 506 (636)
T 4eco_A 428 TPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDD 506 (636)
T ss_dssp SCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGG
T ss_pred CCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCCCCCCCCEEECCCCCCC-CCCHH
T ss_conf 11258988889772796686787887158988989897997887397884044001221477338989699388-16854
Q ss_pred CC--CCCCCCEEEECCCCCCEEEEECCCCCCCCCEEEEC------CCCCCCCCCCCCCCCCCCCEEEEECCHHHHHCCCC
Q ss_conf 59--88445555612379850469926955464468881------58997656731265646857999807043302233
Q 002663 782 AG--WFPKLRKLVLLNFEAVKLVIIEKGAMPDIRELWSG------PCPLLMEIPIGIEHLRNLELFTFHDMSKQVCCMTK 853 (895)
Q Consensus 782 ~~--~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~------~c~~l~~ip~~l~~l~~L~~L~l~~~~~~~~~~~~ 853 (895)
.. .+++|+.|++++|.. ..+|.....+++|+.|+++ +|.....+|..+..+++|+.|++++|.- ..+..
T Consensus 507 ~~~~~l~~L~~L~Ls~N~l-~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l--~~ip~ 583 (636)
T 4eco_A 507 FRATTLPYLVGIDLSYNSF-SKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI--RKVNE 583 (636)
T ss_dssp GSTTTCTTCCEEECCSSCC-SSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC--CBCCS
T ss_pred HHHCCCCCCCEEECCCCCC-CCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEECCCCCC--CCCCH
T ss_conf 5344588769898989988-77682353088878788988866566731212737785699878898989947--70597
Q ss_pred CCEEEEECCCCCEEEEEEECCEECC
Q ss_conf 5411782347827999983882002
Q 002663 854 NEKWEVTEHIPDVRVTYIDAGQLFY 878 (895)
Q Consensus 854 ~~~~~i~~~~p~L~~l~l~~~~i~~ 878 (895)
.+ .+.|+.+.+.+|.+..
T Consensus 584 ----~~---~~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 584 ----KI---TPNISVLDIKDNPNIS 601 (636)
T ss_dssp ----CC---CTTCCEEECCSCTTCE
T ss_pred ----HH---HCCCCEEECCCCCCCC
T ss_conf ----68---3867899876998763
No 10
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=1.00 E-value=1 Score=226.70 Aligned_cols=279 Identities=18% Similarity=0.280 Sum_probs=198.8
Q ss_pred CCCCEEECHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHCCCCC-CCCC-CCEEEEEECCCCCHHHHHHHHH
Q ss_conf 8873000221099999999649999569999928982256899997426266-6888-8258999699999899999999
Q 002663 169 EDDEVVGIESIKDKLIDLMVNGRSKSSVVAVVGEGGLGKTTLAGKLFNNEGL-KTHF-SCRAWVTVGKEYNKNDLLRTII 246 (895)
Q Consensus 169 ~~~~~vG~~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~F-~~~~wv~vs~~~~~~~l~~~i~ 246 (895)
....+|||++++++|.++|....++.++|+|+||||+||||||++++++.+. ..+| +.++|++++.. +...+...+.
T Consensus 122 ~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~~l~ 200 (591)
T 1z6t_A 122 RPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLMKLQ 200 (591)
T ss_dssp CCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHHHHH
T ss_pred CCCEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHCHHHHHHHCCCCEEEEECCCC-CHHHHHHHHH
T ss_conf 987140529999999999860368884699976998988999999983556888528996599977877-6688999999
Q ss_pred H---HHHHCCCCCCCCCCC-CC-C------------CCC---C---CHHHHHHHCCCCCCCCEEEEECCCHHHHHHHCCC
Q ss_conf 9---997403799999986-67-5------------741---1---1787788307999980899992742444321059
Q 002663 247 K---EFHRLSKHGRDGPDR-HA-E------------GPL---E---GQKDVEHALLDNKKCSRIIVTTRHMNVAKFCKSS 303 (895)
Q Consensus 247 ~---~l~~~~~~~~~~~~~-~~-~------------~~L---~---~~~~i~~~l~~~~~gs~iivTTR~~~v~~~~~~~ 303 (895)
. .++.........+.. .. . ..| + ..+.+. . ..+|++||||||++.++..+..
T Consensus 201 ~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~-~---l~~~~~ilvTsR~~~~~~~~~~- 275 (591)
T 1z6t_A 201 NLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLK-A---FDSQCQILLTTRDKSVTDSVMG- 275 (591)
T ss_dssp HHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHH-T---TCSSCEEEEEESCGGGGTTCCS-
T ss_pred HHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHH-H---HCCCCEEEEECCCCHHHHHCCC-
T ss_conf 9999850355655679988999999999997067998699985899879998-7---6379869998988177773489-
Q ss_pred CCCCEEEC---CCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHH---------HHHHHHHHHCCCCCCHHHHHHHHH---C
Q ss_conf 98532425---69994557999887524999999895468989---------999997542048788789986550---4
Q 002663 304 SSVRIHEL---ETLPPDEAWKLFCRKAFGPSSGGCCPSELKEF---------FIVALGGLLSTKNRIVSEWKKLFD---S 368 (895)
Q Consensus 304 ~~~~~~~l---~~L~~~~s~~Lf~~~a~~~~~~~~~~~~l~~~---------ai~~~~~~l~~~~~~~~~w~~~~~---~ 368 (895)
..+++ ++|+.+++++||...++... ...++....+ |+..+|+.++... ..|...+. .
T Consensus 276 ---~~~~v~~l~~L~~~ea~~L~~~~~~~~~--~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~---~~w~~~l~~l~~ 347 (591)
T 1z6t_A 276 ---PKYVVPVESSLGKEKGLEILSLFVNMKK--ADLPEQAHSIIKECKGSPLVVSLIGALLRDFP---NRWEYYLKQLQN 347 (591)
T ss_dssp ---CEEEEECCSSCCHHHHHHHHHHHHTSCG--GGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST---TCHHHHHHHHHS
T ss_pred ---CCEEEECCCCCCHHHHHHHHHHHHCCCC--CCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCC---HHHHHHHHHHHH
T ss_conf ---8268615889998999999998718983--10459999999995898379999999984484---359999999988
Q ss_pred ----------CCCHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
Q ss_conf ----------9990779999860127998104567610245889952342268899998494114688798999999999
Q 002663 369 ----------DPHLKDCNRVLSEGYYDLPHHLKSCLLYFGLFPESCKINRGRLIRLWIAEGFVQYRKRLTSEQVAAEYLD 438 (895)
Q Consensus 369 ----------~~~~~~~~~~l~~sy~~L~~~~k~cfl~~a~fp~~~~i~~~~l~~~w~a~g~i~~~~~~~~~~~~~~~~~ 438 (895)
......+..++..||+.||++.|.||+++|+||+++.|+...+..+|.++ .+.+..++.
T Consensus 348 ~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~-----------~~~~~~~l~ 416 (591)
T 1z6t_A 348 KQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME-----------TEEVEDILQ 416 (591)
T ss_dssp CCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC-----------HHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCC-----------HHHHHHHHH
T ss_conf 689876511465437899999999986899999999974556799850899999996658-----------899999999
Q ss_pred HHHHCCCEEEEECCCCCCEEEEEECHHHHHHHHHHHH
Q ss_conf 9861985321012889814689963999999999750
Q 002663 439 ELIDRSLVQVSNREIPGRAIICQVHDLMHEIIIRKTE 475 (895)
Q Consensus 439 ~Lv~~~ll~~~~~~~~~~~~~~~~hdli~~~~~~~~~ 475 (895)
+|++++|+..... +....|+||+++|++++....
T Consensus 417 ~L~~~~Ll~~~~~---~~~~~~~~H~lv~~~~~~~~~ 450 (591)
T 1z6t_A 417 EFVNKSLLFCDRN---GKSFRYYLHDLQVDFLTEKNC 450 (591)
T ss_dssp HHHHTTSSEEEEE---TTEEEEECCHHHHHHHHHHTG
T ss_pred HHHHCCCEEEECC---CCCCEEEECHHHHHHHHHHHH
T ss_conf 9985958688548---985679976899999986535
Done!