Citrus Sinensis ID: 002664
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 895 | 2.2.26 [Sep-21-2011] | |||||||
| Q9M907 | 871 | Pentatricopeptide repeat- | yes | no | 0.943 | 0.969 | 0.754 | 0.0 | |
| Q9SZ52 | 1112 | Pentatricopeptide repeat- | no | no | 0.820 | 0.660 | 0.296 | 7e-96 | |
| Q9FJE6 | 907 | Putative pentatricopeptid | no | no | 0.892 | 0.880 | 0.272 | 1e-87 | |
| Q9SXD1 | 630 | Pentatricopeptide repeat- | no | no | 0.620 | 0.880 | 0.301 | 1e-80 | |
| Q76C99 | 791 | Protein Rf1, mitochondria | N/A | no | 0.744 | 0.841 | 0.286 | 6e-79 | |
| Q9M9X9 | 987 | Pentatricopeptide repeat- | no | no | 0.745 | 0.675 | 0.277 | 8e-79 | |
| Q9CAN0 | 630 | Pentatricopeptide repeat- | no | no | 0.620 | 0.880 | 0.290 | 9e-78 | |
| Q9LQ16 | 632 | Pentatricopeptide repeat- | no | no | 0.620 | 0.878 | 0.283 | 7e-77 | |
| Q9FIX3 | 747 | Pentatricopeptide repeat- | no | no | 0.621 | 0.744 | 0.290 | 8e-77 | |
| Q9LQ14 | 629 | Pentatricopeptide repeat- | no | no | 0.614 | 0.874 | 0.297 | 2e-76 |
| >sp|Q9M907|PP217_ARATH Pentatricopeptide repeat-containing protein At3g06920 OS=Arabidopsis thaliana GN=At3g06920 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 1369 bits (3544), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 642/851 (75%), Positives = 736/851 (86%), Gaps = 7/851 (0%)
Query: 45 SYQGNSRMNDWARTVVDDVYNILHAGPWGPAVENALSSLDGMPQPGLVIGVLRRLKDVNL 104
+++GN R V+D+ N+L GPWGP+ EN LS+L PQP VIGVLRRLKDVN
Sbjct: 28 TFEGN-------RQTVNDICNVLETGPWGPSAENTLSALSFKPQPEFVIGVLRRLKDVNR 80
Query: 105 AINYFRWVERKTDQAHSLEAYNSLLMVMAVSKNFEPLEEILGEMSLAGIGPTNNTCIELV 164
AI YFRW ER+T+ H E+YNSLL+VMA +NF+ L++ILGEMS+AG GP+ NTCIE+V
Sbjct: 81 AIEYFRWYERRTELPHCPESYNSLLLVMARCRNFDALDQILGEMSVAGFGPSVNTCIEMV 140
Query: 165 VSCVKSKMLREAFDIIQTMRKFKFRPAFTAYTTLIGALATVRESNLMLNLFHQMQELGYE 224
+ CVK+ LRE +D++Q MRKFKFRPAF+AYTTLIGA + V S++ML LF QMQELGYE
Sbjct: 141 LGCVKANKLREGYDVVQMMRKFKFRPAFSAYTTLIGAFSAVNHSDMMLTLFQQMQELGYE 200
Query: 225 VSVHLFTTLIRVFAREGRVDDALFLLDEMKNNAFSVDIVLYNVCIDCFGKVGKVDMAWKF 284
+VHLFTTLIR FA+EGRVD AL LLDEMK+++ DIVLYNVCID FGKVGKVDMAWKF
Sbjct: 201 PTVHLFTTLIRGFAKEGRVDSALSLLDEMKSSSLDADIVLYNVCIDSFGKVGKVDMAWKF 260
Query: 285 FHEMKAQGVAPDDVTYTSMIGVLCKSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGS 344
FHE++A G+ PD+VTYTSMIGVLCK+ RL+EAV MFE +++NR VPC YAYNTMIMGYGS
Sbjct: 261 FHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGS 320
Query: 345 VGKFDEAFSLFERLKQKGCIPSVIAYNSLLTCLGKKGRVTEAMKIFEAMKKDARPNNTTY 404
GKFDEA+SL ER + KG IPSVIAYN +LTCL K G+V EA+K+FE MKKDA PN +TY
Sbjct: 321 AGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMGKVDEALKVFEEMKKDAAPNLSTY 380
Query: 405 NVLIDMLCKAGNFEDALKFRDAMKEAGLFPNVMTVNIMVDRLCKAQKLDEAFSIFEGMDH 464
N+LIDMLC+AG + A + RD+M++AGLFPNV TVNIMVDRLCK+QKLDEA ++FE MD+
Sbjct: 381 NILIDMLCRAGKLDTAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEACAMFEEMDY 440
Query: 465 KTCTPDAVTFCSLIDGLGKNGRVDDAYKFYEKMLDTDQIPNAILYTSLIRNFFKHGRKED 524
K CTPD +TFCSLIDGLGK GRVDDAYK YEKMLD+D N+I+YTSLI+NFF HGRKED
Sbjct: 441 KVCTPDEITFCSLIDGLGKVGRVDDAYKVYEKMLDSDCRTNSIVYTSLIKNFFNHGRKED 500
Query: 525 GHKIYKEMVQRGCSPDLMLLNTYMDCVFKAGETEKGRALFEEIKAQGFVPDVQSYSILIH 584
GHKIYK+M+ + CSPDL LLNTYMDC+FKAGE EKGRA+FEEIKA+ FVPD +SYSILIH
Sbjct: 501 GHKIYKDMINQNCSPDLQLLNTYMDCMFKAGEPEKGRAMFEEIKARRFVPDARSYSILIH 560
Query: 585 GLVKAGFAHETDQLFYAMKKQGCVLDTRAYNTVVDGFCKSGKVNKAYQLLEEMKTKGHYP 644
GL+KAGFA+ET +LFY+MK+QGCVLDTRAYN V+DGFCK GKVNKAYQLLEEMKTKG P
Sbjct: 561 GLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEP 620
Query: 645 TVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNTVIYSSLIDGFGKVGRIDEAYLIM 704
TVVTYGSVIDGLAKIDRLDEAYMLFEEAKSK IELN VIYSSLIDGFGKVGRIDEAYLI+
Sbjct: 621 TVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLIL 680
Query: 705 EELMQKGLTPNAYTWNCLLDALVKAEEISEAFVCFQSMKDLKCTPNHVTYSIIINGLCRV 764
EELMQKGLTPN YTWN LLDALVKAEEI+EA VCFQSMK+LKCTPN VTY I+INGLC+V
Sbjct: 681 EELMQKGLTPNLYTWNSLLDALVKAEEINEALVCFQSMKELKCTPNQVTYGILINGLCKV 740
Query: 765 RKFNKAFVFWQEMQKQGFKPNTITYTTMISGLAKAGNITEANGLFERFKENGGVPDSACY 824
RKFNKAFVFWQEMQKQG KP+TI+YTTMISGLAKAGNI EA LF+RFK NGGVPDSACY
Sbjct: 741 RKFNKAFVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEAGALFDRFKANGGVPDSACY 800
Query: 825 NAMMEGLSNANRAMDAYTLFEETRRKGFNIHTKTCVILLDALHKAECLEQAAIVGAVLRE 884
NAM+EGLSN NRAMDA++LFEETRR+G IH KTCV+LLD LHK +CLEQAAIVGAVLRE
Sbjct: 801 NAMIEGLSNGNRAMDAFSLFEETRRRGLPIHNKTCVVLLDTLHKNDCLEQAAIVGAVLRE 860
Query: 885 TAKSQHAARSW 895
T K++HAARSW
Sbjct: 861 TGKARHAARSW 871
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SZ52|PP344_ARATH Pentatricopeptide repeat-containing protein At4g31850, chloroplastic OS=Arabidopsis thaliana GN=PGR3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 352 bits (903), Expect = 7e-96, Method: Compositional matrix adjust.
Identities = 230/776 (29%), Positives = 375/776 (48%), Gaps = 42/776 (5%)
Query: 124 AYNSLLMVMAVSKNFEPLEEILGEMSLAGIGPTNNTCIELVVSCVKSKMLREAFDIIQTM 183
Y +LL + +++ + +++ EM G P T LV + K+ EAFD + M
Sbjct: 330 TYITLLDRFSDNRDLDSVKQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFDTLDVM 389
Query: 184 RKFKFRPAFTAYTTLIGALATVRESNLMLNLFHQMQELGYEVSVHLFTTLIRVFAREGRV 243
R P Y TLI L V + L LF M+ LG + + + + I + + G
Sbjct: 390 RDQGILPNLHTYNTLICGLLRVHRLDDALELFGNMESLGVKPTAYTYIVFIDYYGKSGDS 449
Query: 244 DDALFLLDEMKNNAFSVDIVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGVAPDDVTYTSM 303
AL ++MK + +IV N + K G+ A + F+ +K G+ PD VTY M
Sbjct: 450 VSALETFEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMM 509
Query: 304 IGVLCKSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLFERLKQKGC 363
+ K ++EA+ + +M N P N++I + DEA+ +F R+K+
Sbjct: 510 MKCYSKVGEIDEAIKLLSEMMENGCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKL 569
Query: 364 IPSVIAYNSLLTCLGKKGRVTEAMKIFEAM-KKDARPNNTTYNVLIDMLCKAGNFEDALK 422
P+V+ YN+LL LGK G++ EA+++FE M +K PN T+N L D LCK ALK
Sbjct: 570 KPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTLFDCLCKNDEVTLALK 629
Query: 423 FRDAMKEAGLFPNVMTVNIMVDRLCKAQKLDEAFSIFEGMDHKTCTPDAVTFCSLIDGLG 482
M + G P+V T N ++ L K ++ EA F M K PD VT C+L+ G+
Sbjct: 630 MLFKMMDMGCVPDVFTYNTIIFGLVKNGQVKEAMCFFHQM-KKLVYPDFVTLCTLLPGVV 688
Query: 483 KNGRVDDAYK----------------FYEKMLDT----DQIPNAILYT------------ 510
K ++DAYK F+E ++ + I NA+ ++
Sbjct: 689 KASLIEDAYKIITNFLYNCADQPANLFWEDLIGSILAEAGIDNAVSFSERLVANGICRDG 748
Query: 511 -----SLIRNFFKHGRKEDGHKIYKEMVQR-GCSPDLMLLNTYMDCVFKAGETEKGRALF 564
+IR KH ++++ + G P L N + + +A E + +F
Sbjct: 749 DSILVPIIRYSCKHNNVSGARTLFEKFTKDLGVQPKLPTYNLLIGGLLEADMIEIAQDVF 808
Query: 565 EEIKAQGFVPDVQSYSILIHGLVKAGFAHETDQLFYAMKKQGCVLDTRAYNTVVDGFCKS 624
++K+ G +PDV +Y+ L+ K+G E +L+ M C +T +N V+ G K+
Sbjct: 809 LQVKSTGCIPDVATYNFLLDAYGKSGKIDELFELYKEMSTHECEANTITHNIVISGLVKA 868
Query: 625 GKVNKAYQLLEE-MKTKGHYPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNTVI 683
G V+ A L + M + PT TYG +IDGL+K RL EA LFE G N I
Sbjct: 869 GNVDDALDLYYDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAI 928
Query: 684 YSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNAYTWNCLLDALVKAEEISEAFVCFQSMK 743
Y+ LI+GFGK G D A + + ++++G+ P+ T++ L+D L + E F+ +K
Sbjct: 929 YNILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFKELK 988
Query: 744 DLKCTPNHVTYSIIINGLCRVRKFNKAFVFWQEMQ-KQGFKPNTITYTTMISGLAKAGNI 802
+ P+ V Y++IINGL + + +A V + EM+ +G P+ TY ++I L AG +
Sbjct: 989 ESGLNPDVVCYNLIINGLGKSHRLEEALVLFNEMKTSRGITPDLYTYNSLILNLGIAGMV 1048
Query: 803 TEANGLFERFKENGGVPDSACYNAMMEGLSNANRAMDAYTLFEETRRKGFNIHTKT 858
EA ++ + G P+ +NA++ G S + + AY +++ GF+ +T T
Sbjct: 1049 EEAGKIYNEIQRAGLEPNVFTFNALIRGYSLSGKPEHAYAVYQTMVTGGFSPNTGT 1104
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Plays a role in the stabilization of the primary polycistronic transcript of the petL operon encoding subunits of the cytochrome b6-f complex. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FJE6|PP437_ARATH Putative pentatricopeptide repeat-containing protein At5g59900 OS=Arabidopsis thaliana GN=At5g59900 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 325 bits (833), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 234/859 (27%), Positives = 389/859 (45%), Gaps = 60/859 (6%)
Query: 57 RTVVDDVYNILHAG-PWGPAVENALSS--LDGMPQPGLVIGVLRRLKDVNLAINYFRWVE 113
+ VD V I+ W A+ + L S L + ++IG + D L + +F ++
Sbjct: 39 KQFVDAVKRIVRGKRSWEIALSSELVSRRLKTVHVEEILIGTI---DDPKLGLRFFNFLG 95
Query: 114 RKTDQAHSLEAYNSLLMVMAVSKNFEPLEEILGEMSLAGIGPTNN-----TCIE------ 162
HS ++ L+ + + F P +L + L + P++ +C E
Sbjct: 96 LHRGFDHSTASFCILIHALVKANLFWPASSLLQTLLLRALKPSDVFNVLFSCYEKCKLSS 155
Query: 163 ------LVVSCVKSKMLREAFDIIQTM-RKFKFRPAFTAYTTLIGALATVRESNLMLNLF 215
L+ V+S+ + + + + M K P + L+ L R L + LF
Sbjct: 156 SSSFDLLIQHYVRSRRVLDGVLVFKMMITKVSLLPEVRTLSALLHGLVKFRHFGLAMELF 215
Query: 216 HQMQELGYEVSVHLFTTLIRVFAREGRVDDALFLLDEMKNNAFSVDIVLYNVCIDCFGKV 275
+ M +G V+++T +IR + A ++ M+ V+IV YNV ID K
Sbjct: 216 NDMVSVGIRPDVYIYTGVIRSLCELKDLSRAKEMIAHMEATGCDVNIVPYNVLIDGLCKK 275
Query: 276 GKVDMAWKFFHEMKAQGVAPDDVTYTSMIGVLCKSKRLEEAVAMFEQMDRNREVPCAYAY 335
KV A ++ + + PD VTY +++ LCK + E + M ++M R P A
Sbjct: 276 QKVWEAVGIKKDLAGKDLKPDVVTYCTLVYGLCKVQEFEIGLEMMDEMLCLRFSPSEAAV 335
Query: 336 NTMIMGYGSVGKFDEAFSLFERLKQKGCIPSVIAYNSLLTCLGKKGRVTEAMKIFEAMKK 395
++++ G GK +EA +L +R+ G P++ YN+L+ L K + EA +F+ M K
Sbjct: 336 SSLVEGLRKRGKIEEALNLVKRVVDFGVSPNLFVYNALIDSLCKGRKFHEAELLFDRMGK 395
Query: 396 -DARPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEAGLFPNVMTVNIMVDRLCKAQKLDE 454
RPN+ TY++LIDM C+ G + AL F M + GL +V N +++ CK +
Sbjct: 396 IGLRPNDVTYSILIDMFCRRGKLDTALSFLGEMVDTGLKLSVYPYNSLINGHCKFGDISA 455
Query: 455 AFSIFEGMDHKTCTPDAVTFCSLIDGLGKNGRVDDAYKFYEKMLDTDQIPNAILYTSLIR 514
A M +K P VT+ SL+ G G+++ A + Y +M P+ +T+L+
Sbjct: 456 AEGFMAEMINKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGKGIAPSIYTFTTLLS 515
Query: 515 NFFKHGRKEDGHKIYKEMVQRGCSPDLMLLNTYMDCVFKAGETEKGRALFEEIKAQGFVP 574
F+ G D K++ EM + P+ + N ++ + G+ K +E+ +G VP
Sbjct: 516 GLFRAGLIRDAVKLFNEMAEWNVKPNRVTYNVMIEGYCEEGDMSKAFEFLKEMTEKGIVP 575
Query: 575 DVQSYSILIHGLVKAGFAHETDQLFYAMKKQGCVLDTRAYNTVVDGFCKSGKVNKAYQLL 634
D SY LIHGL G A E + K C L+ Y ++ GFC+ GK+ +A +
Sbjct: 576 DTYSYRPLIHGLCLTGQASEAKVFVDGLHKGNCELNEICYTGLLHGFCREGKLEEALSVC 635
Query: 635 EEMKTKGHYPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNTVIYSSLIDGFGKV 694
+EM +G +V YG +IDG K + L +E +G++ + VIY+S+ID K
Sbjct: 636 QEMVQRGVDLDLVCYGVLIDGSLKHKDRKLFFGLLKEMHDRGLKPDDVIYTSMIDAKSKT 695
Query: 695 GRIDEAYLIMEELMQKGLTPNAYTWNCLLDALVKAEEISEAFVCFQSMKDLKCTPNHV-- 752
G EA+ I + ++ +G PN T+ +++ L KA ++EA V M+ + PN V
Sbjct: 696 GDFKEAFGIWDLMINEGCVPNEVTYTAVINGLCKAGFVNEAEVLCSKMQPVSSVPNQVTY 755
Query: 753 ---------------------------------TYSIIINGLCRVRKFNKAFVFWQEMQK 779
TY+++I G CR + +A M
Sbjct: 756 GCFLDILTKGEVDMQKAVELHNAILKGLLANTATYNMLIRGFCRQGRIEEASELITRMIG 815
Query: 780 QGFKPNTITYTTMISGLAKAGNITEANGLFERFKENGGVPDSACYNAMMEGLSNANRAMD 839
G P+ ITYTTMI+ L + ++ +A L+ E G PD YN ++ G A
Sbjct: 816 DGVSPDCITYTTMINELCRRNDVKKAIELWNSMTEKGIRPDRVAYNTLIHGCCVAGEMGK 875
Query: 840 AYTLFEETRRKGFNIHTKT 858
A L E R+G + KT
Sbjct: 876 ATELRNEMLRQGLIPNNKT 894
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SXD1|PPR91_ARATH Pentatricopeptide repeat-containing protein At1g62670, mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 301 bits (771), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 168/558 (30%), Positives = 292/558 (52%), Gaps = 3/558 (0%)
Query: 312 RLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLFERLKQKGCIPSVIAYN 371
+L++AVA+F +M ++R P ++ ++ + KFD SL E+++ G + Y+
Sbjct: 61 KLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYS 120
Query: 372 SLLTCLGKKGRVTEAMKIF-EAMKKDARPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEA 430
L+ C ++ ++ A+ + + MK PN T + L++ C + +A+ D M
Sbjct: 121 ILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVT 180
Query: 431 GLFPNVMTVNIMVDRLCKAQKLDEAFSIFEGMDHKTCTPDAVTFCSLIDGLGKNGRVDDA 490
G PN +T N ++ L K EA ++ + M K C PD VT+ +++GL K G D A
Sbjct: 181 GYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLA 240
Query: 491 YKFYEKMLDTDQIPNAILYTSLIRNFFKHGRKEDGHKIYKEMVQRGCSPDLMLLNTYMDC 550
+ KM P ++Y ++I K+ +D ++KEM +G P+++ ++ + C
Sbjct: 241 FNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISC 300
Query: 551 VFKAGETEKGRALFEEIKAQGFVPDVQSYSILIHGLVKAGFAHETDQLFYAMKKQGCVLD 610
+ G L ++ + PDV ++S LI VK G E ++L+ M K+
Sbjct: 301 LCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPS 360
Query: 611 TRAYNTVVDGFCKSGKVNKAYQLLEEMKTKGHYPTVVTYGSVIDGLAKIDRLDEAYMLFE 670
Y+++++GFC ++++A Q+ E M +K +P VVTY ++I G K R++E +F
Sbjct: 361 IVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFR 420
Query: 671 EAKSKGIELNTVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNAYTWNCLLDALVKAE 730
E +G+ NTV Y+ LI G + G D A I +E++ G+ PN T+N LLD L K
Sbjct: 421 EMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNG 480
Query: 731 EISEAFVCFQSMKDLKCTPNHVTYSIIINGLCRVRKFNKAFVFWQEMQKQGFKPNTITYT 790
++ +A V F+ ++ K P TY+I+I G+C+ K + + + +G KP+ + Y
Sbjct: 481 KLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYN 540
Query: 791 TMISGLAKAGNITEANGLFERFKENGGVPDSACYNAMMEG-LSNANRAMDAYTLFEETRR 849
TMISG + G+ EA+ LF+ KE+G +P+S CYN ++ L + +R A L +E R
Sbjct: 541 TMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASA-ELIKEMRS 599
Query: 850 KGFNIHTKTCVILLDALH 867
GF T ++ + LH
Sbjct: 600 CGFAGDASTIGLVTNMLH 617
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q76C99|RF1_ORYSI Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica GN=Rf1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 296 bits (757), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 204/712 (28%), Positives = 331/712 (46%), Gaps = 46/712 (6%)
Query: 163 LVVSCVKSKMLREAFDIIQTMRKFKFRPAFTAYTTLI-GALATVRESNLMLNLFHQMQEL 221
L+ C ++ L F + + K FR A+T L+ G A R S+ M + +M EL
Sbjct: 93 LIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTEL 152
Query: 222 GYEVSVHLFTTLIRVFAREGRVDDALFLLDEMKNN---AFSVDIVLYNVCIDCFGKVGKV 278
G +V + L++ E R +AL LL M ++ D+V Y I+ F K G
Sbjct: 153 GCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDS 212
Query: 279 DMAWKFFHEMKAQGVAPDDVTYTSMIGVLCKSKRLEEAVAMFEQMDRNREVPCAYAYNTM 338
D A+ +HEM +G+ PD VTY S+I LCK++ +++A+ + M +N +P YN++
Sbjct: 213 DKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSI 272
Query: 339 IMGYGSVGKFDEAFSLFERLKQKGCIPSVIAYNSLLTCLGKKGRVTEAMKIFEAM-KKDA 397
+ GY S G+ EA ++++ G P V+ Y+ L+ L K GR EA KIF++M K+
Sbjct: 273 LHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGL 332
Query: 398 RPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEAGLFPNVMTVNIMVDRLCKAQKLDEAFS 457
+P TTY L+ G + D M G+ P+ +I++ K K+D+A
Sbjct: 333 KPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAML 392
Query: 458 IFEGMDHKTCTPDAVTFCSLIDGLGKNGRVDDAYKFYEKMLDTDQIPNAILYTSLIRNFF 517
+F M + P+AVT+ ++I L K+GRV+DA ++E+M+D P I+Y SLI
Sbjct: 393 VFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLC 452
Query: 518 KHGRKEDGHKIYKEMVQRGCSPDLMLLNTYMDCVFKAGETEKGRALFEEIKAQGFVPDVQ 577
+ E ++ EM+ RG + + N+ +D K G + LFE + G P+V
Sbjct: 453 TCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVI 512
Query: 578 SYSILIHGLVKAGFAHETDQLFYAMKKQGCVLDTRAYNTVVDGFCKSGKVNKAYQLLEEM 637
+Y+ LI+G AG E +L M G +T Y+T+++G+CK ++ A L +EM
Sbjct: 513 TYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEM 572
Query: 638 KTKGHYPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNTVIYSSLIDGFGKVGRI 697
++ G P ++TY ++ GL + R A L+ G ++ Y+ ++ G K
Sbjct: 573 ESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLT 632
Query: 698 DEAYLIMEELMQKGLTPNAYTWNCLLDALVKA---EEISEAFVCFQSMKDLKCTPNHVTY 754
D+A + + L L A T+N ++DAL+K +E + FV F S
Sbjct: 633 DDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSS------------- 679
Query: 755 SIIINGLCRVRKFNKAFVFWQEMQKQGFKPNTITYTTMISGLAKAGNITEANGLFERFKE 814
G PN TY M + G + E + LF ++
Sbjct: 680 -------------------------NGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMED 714
Query: 815 NGGVPDSACYNAMMEGLSNANRAMDAYTLFEETRRKGFNIHTKTCVILLDAL 866
NG DS N ++ L A T K F++ T + +D L
Sbjct: 715 NGCTVDSGMLNFIVRELLQRGEITRAGTYLSMIDEKHFSLEASTASLFIDLL 766
|
Reduces the expression of the cytoplasmic male sterility (CMS)-associated mitochondrial gene ORF79, encoding a cytotoxic peptide. Can restore male fertility by blocking ORF79 production via endonucleolytic cleavage of dicistronic ATP6/ORF79 mRNA. Promotes the editing of ATP6 mRNAs independently of its cleavage function. Oryza sativa subsp. indica (taxid: 39946) |
| >sp|Q9M9X9|PPR18_ARATH Pentatricopeptide repeat-containing protein At1g06710, mitochondrial OS=Arabidopsis thaliana GN=At1g06710 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 295 bits (756), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 194/699 (27%), Positives = 314/699 (44%), Gaps = 32/699 (4%)
Query: 184 RKFKFRPAFTAYTTLIGALATVRESNLMLNLFHQMQELGYEVSVHLFTTLIRVFAREGRV 243
R+ ++ Y L+ + + + Q+++ EV L+R R G
Sbjct: 157 RQIGYKHTAPVYNALVDLIVRDDDEKVPEEFLQQIRDDDKEVFGEFLNVLVRKHCRNGSF 216
Query: 244 DDALFLLDEMKNNAFSVDIVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGVAPDDVTYTSM 303
AL L +K+ F YN I F K ++D A EM + D T
Sbjct: 217 SIALEELGRLKDFRFRPSRSTYNCLIQAFLKADRLDSASLIHREMSLANLRMDGFTLRCF 276
Query: 304 IGVLCKSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLFERLKQKGC 363
LCK + EA+ + E + VP Y +I G F+EA R++ C
Sbjct: 277 AYSLCKVGKWREALTLVETENF---VPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSC 333
Query: 364 IPSVIAYNSLLT-CLGKK--GRVTEAMKIFEAMKKDARPNNTTYNVLIDMLCKAGNFEDA 420
+P+V+ Y++LL CL KK GR + + M + P+ +N L+ C +G+ A
Sbjct: 334 LPNVVTYSTLLCGCLNKKQLGRCKRVLNMM--MMEGCYPSPKIFNSLVHAYCTSGDHSYA 391
Query: 421 LKFRDAMKEAGLFPNVMTVNIMVDRLC------KAQKLDEAFSIFEGMDHKTCTPDAVTF 474
K M + G P + NI++ +C LD A + M + +
Sbjct: 392 YKLLKKMVKCGHMPGYVVYNILIGSICGDKDSLNCDLLDLAEKAYSEMLAAGVVLNKINV 451
Query: 475 CSLIDGLGKNGRVDDAYKFYEKMLDTDQIPNAILYTSLIRNFFKHGRKEDGHKIYKEMVQ 534
S L G+ + A+ +M+ IP+ Y+ ++ + E +++EM +
Sbjct: 452 SSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKR 511
Query: 535 RGCSPDLMLLNTYMDCVFKAGETEKGRALFEEIKAQGFVPDVQSYSILIHGLVKAGFAHE 594
G D+ +D KAG E+ R F E++ G P+V +Y+ LIH +KA
Sbjct: 512 GGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSY 571
Query: 595 TDQLFYAMKKQGCVLDTRAYNTVVDGFCKSGKVNKAYQLLEEM----------------K 638
++LF M +GC+ + Y+ ++DG CK+G+V KA Q+ E M
Sbjct: 572 ANELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDVDMYFKQYD 631
Query: 639 TKGHYPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNTVIYSSLIDGFGKVGRID 698
P VVTYG+++DG K R++EA L + +G E N ++Y +LIDG KVG++D
Sbjct: 632 DNSERPNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLD 691
Query: 699 EAYLIMEELMQKGLTPNAYTWNCLLDALVKAEEISEAFVCFQSMKDLKCTPNHVTYSIII 758
EA + E+ + G YT++ L+D K + A M + C PN V Y+ +I
Sbjct: 692 EAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMI 751
Query: 759 NGLCRVRKFNKAFVFWQEMQKQGFKPNTITYTTMISGLAKAGNITEANGLFERFKENGGV 818
+GLC+V K ++A+ Q M+++G +PN +TYT MI G G I L ER G
Sbjct: 752 DGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVA 811
Query: 819 PDSACYNAMMEGLSNANRAMD-AYTLFEETRRKGFNIHT 856
P+ Y +++ N A+D A+ L EE ++ + HT
Sbjct: 812 PNYVTYRVLIDHCCK-NGALDVAHNLLEEMKQTHWPTHT 849
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9CAN0|PPR99_ARATH Pentatricopeptide repeat-containing protein At1g63130, mitochondrial OS=Arabidopsis thaliana GN=At1g63130 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 292 bits (747), Expect = 9e-78, Method: Compositional matrix adjust.
Identities = 162/558 (29%), Positives = 287/558 (51%), Gaps = 3/558 (0%)
Query: 312 RLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLFERLKQKGCIPSVIAYN 371
+L++AV +F M ++R P ++ ++ + KFD SL E+++ G ++ Y+
Sbjct: 61 KLDDAVNLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYS 120
Query: 372 SLLTCLGKKGRVTEAMKIF-EAMKKDARPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEA 430
L+ C ++ +++ A+ + + MK P+ T N L++ C DA+ M E
Sbjct: 121 ILINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEM 180
Query: 431 GLFPNVMTVNIMVDRLCKAQKLDEAFSIFEGMDHKTCTPDAVTFCSLIDGLGKNGRVDDA 490
G P+ T N ++ L + + EA ++ + M K C PD VT+ +++GL K G +D A
Sbjct: 181 GYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLA 240
Query: 491 YKFYEKMLDTDQIPNAILYTSLIRNFFKHGRKEDGHKIYKEMVQRGCSPDLMLLNTYMDC 550
+KM P ++Y ++I + D ++ EM +G P+++ N+ + C
Sbjct: 241 LSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRC 300
Query: 551 VFKAGETEKGRALFEEIKAQGFVPDVQSYSILIHGLVKAGFAHETDQLFYAMKKQGCVLD 610
+ G L ++ + P+V ++S LI VK G E ++L+ M K+ D
Sbjct: 301 LCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPD 360
Query: 611 TRAYNTVVDGFCKSGKVNKAYQLLEEMKTKGHYPTVVTYGSVIDGLAKIDRLDEAYMLFE 670
Y+++++GFC ++++A + E M +K +P VVTY ++I G K R+DE LF
Sbjct: 361 IFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFR 420
Query: 671 EAKSKGIELNTVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNAYTWNCLLDALVKAE 730
E +G+ NTV Y++LI GF + D A ++ ++++ G+ P+ T++ LLD L
Sbjct: 421 EMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNG 480
Query: 731 EISEAFVCFQSMKDLKCTPNHVTYSIIINGLCRVRKFNKAFVFWQEMQKQGFKPNTITYT 790
++ A V F+ ++ K P+ TY+I+I G+C+ K + + + +G KPN +TYT
Sbjct: 481 KVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVTYT 540
Query: 791 TMISGLAKAGNITEANGLFERFKENGGVPDSACYNAMMEG-LSNANRAMDAYTLFEETRR 849
TM+SG + G EA+ LF KE G +PDS YN ++ L + ++A A L E R
Sbjct: 541 TMMSGFCRKGLKEEADALFREMKEEGPLPDSGTYNTLIRAHLRDGDKAASA-ELIREMRS 599
Query: 850 KGFNIHTKTCVILLDALH 867
F T ++ + LH
Sbjct: 600 CRFVGDASTIGLVTNMLH 617
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LQ16|PPR94_ARATH Pentatricopeptide repeat-containing protein At1g62910 OS=Arabidopsis thaliana GN=At1g62910 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 289 bits (740), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 158/558 (28%), Positives = 290/558 (51%), Gaps = 3/558 (0%)
Query: 312 RLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLFERLKQKGCIPSVIAYN 371
++++AV +F M ++R P +N ++ + KF+ SL E+++ G + Y+
Sbjct: 63 KVDDAVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYS 122
Query: 372 SLLTCLGKKGRVTEAMKIF-EAMKKDARPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEA 430
+ C ++ +++ A+ + + MK P+ T + L++ C + DA+ D M E
Sbjct: 123 IFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEM 182
Query: 431 GLFPNVMTVNIMVDRLCKAQKLDEAFSIFEGMDHKTCTPDAVTFCSLIDGLGKNGRVDDA 490
G P+ T ++ L K EA ++ + M + C PD VT+ ++++GL K G +D A
Sbjct: 183 GYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLA 242
Query: 491 YKFYEKMLDTDQIPNAILYTSLIRNFFKHGRKEDGHKIYKEMVQRGCSPDLMLLNTYMDC 550
+KM + ++Y ++I K+ +D ++ EM +G PD+ ++ + C
Sbjct: 243 LSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISC 302
Query: 551 VFKAGETEKGRALFEEIKAQGFVPDVQSYSILIHGLVKAGFAHETDQLFYAMKKQGCVLD 610
+ G L ++ + P+V ++S LI VK G E ++L+ M K+ D
Sbjct: 303 LCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPD 362
Query: 611 TRAYNTVVDGFCKSGKVNKAYQLLEEMKTKGHYPTVVTYGSVIDGLAKIDRLDEAYMLFE 670
Y+++++GFC ++++A + E M +K +P VVTY ++I G K R++E LF
Sbjct: 363 IFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFR 422
Query: 671 EAKSKGIELNTVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNAYTWNCLLDALVKAE 730
E +G+ NTV Y++LI GF + D A ++ ++++ G+ PN T+N LLD L K
Sbjct: 423 EMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNG 482
Query: 731 EISEAFVCFQSMKDLKCTPNHVTYSIIINGLCRVRKFNKAFVFWQEMQKQGFKPNTITYT 790
++++A V F+ ++ P+ TY+I+I G+C+ K + + + +G PN I Y
Sbjct: 483 KLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWELFCNLSLKGVSPNVIAYN 542
Query: 791 TMISGLAKAGNITEANGLFERFKENGGVPDSACYNAMMEG-LSNANRAMDAYTLFEETRR 849
TMISG + G+ EA+ L ++ KE+G +P+S YN ++ L + +R A L +E R
Sbjct: 543 TMISGFCRKGSKEEADSLLKKMKEDGPLPNSGTYNTLIRARLRDGDREASA-ELIKEMRS 601
Query: 850 KGFNIHTKTCVILLDALH 867
GF T ++ + LH
Sbjct: 602 CGFAGDASTIGLVTNMLH 619
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 289 bits (739), Expect = 8e-77, Method: Compositional matrix adjust.
Identities = 167/574 (29%), Positives = 294/574 (51%), Gaps = 18/574 (3%)
Query: 334 AYNTMIMGYGSVGKFDEAFSLFERLKQKGCIPSVIAYNSLL-TCLGKKGRVTEAMKIF-E 391
++ ++ Y + D+A S+ + G +P V++YN++L + K ++ A +F E
Sbjct: 136 VFDLVVKSYSRLSLIDKALSIVHLAQAHGFMPGVLSYNAVLDATIRSKRNISFAENVFKE 195
Query: 392 AMKKDARPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEAGLFPNVMTVNIMVDRLCKAQK 451
++ PN TYN+LI C AGN + AL D M+ G PNV+T N ++D CK +K
Sbjct: 196 MLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRK 255
Query: 452 LDEAFSIFEGMDHKTCTPDAVTFCSLIDGLGKNGRVDDAYKFYEKMLDTDQIPNAILYTS 511
+D+ F + M K P+ +++ +I+GL + GR+ + +M + + Y +
Sbjct: 256 IDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNT 315
Query: 512 LIRNFFKHGRKEDGHKIYKEMVQRGCSPDLMLLNTYMDCVFKAGETEKGRALFEEIKAQG 571
LI+ + K G ++ EM++ G +P ++ + + + KAG + ++++ +G
Sbjct: 316 LIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRG 375
Query: 572 FVPDVQSYSILIHGLVKAGFAHETDQLFYAMKKQGCVLDTRAYNTVVDGFCKSGKVNKAY 631
P+ ++Y+ L+ G + G+ +E ++ M G YN +++G C +GK+ A
Sbjct: 376 LCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAI 435
Query: 632 QLLEEMKTKGHYPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNTVIYSSLIDGF 691
+LE+MK KG P VV+Y +V+ G + +DEA + E KGI+ +T+ YSSLI GF
Sbjct: 436 AVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGF 495
Query: 692 GKVGRIDEAYLIMEELMQKGLTPNAYTWNCLLDALVKAEEISEAFVCFQSMKDLKCTPNH 751
+ R EA + EE+++ GL P+ +T+ L++A ++ +A M + P+
Sbjct: 496 CEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDV 555
Query: 752 VTYSIIINGLCRVRKFNKAFVFWQEMQKQGFKPNTITYTTMIS---------------GL 796
VTYS++INGL + + +A ++ + P+ +TY T+I G
Sbjct: 556 VTYSVLINGLNKQSRTREAKRLLLKLFYEESVPSDVTYHTLIENCSNIEFKSVVSLIKGF 615
Query: 797 AKAGNITEANGLFERFKENGGVPDSACYNAMMEGLSNANRAMDAYTLFEETRRKGFNIHT 856
G +TEA+ +FE PD YN M+ G A AYTL++E + GF +HT
Sbjct: 616 CMKGMMTEADQVFESMLGKNHKPDGTAYNIMIHGHCRAGDIRKAYTLYKEMVKSGFLLHT 675
Query: 857 KTCVILLDALHK-AECLEQAAIVGAVLRETAKSQ 889
T + L+ ALHK + E +++ VLR S+
Sbjct: 676 VTVIALVKALHKEGKVNELNSVIVHVLRSCELSE 709
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LQ14|PPR96_ARATH Pentatricopeptide repeat-containing protein At1g62930, chloroplastic OS=Arabidopsis thaliana GN=At1g62930 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 288 bits (736), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 164/551 (29%), Positives = 285/551 (51%), Gaps = 1/551 (0%)
Query: 212 LNLFHQMQELGYEVSVHLFTTLIRVFAREGRVDDALFLLDEMKNNAFSVDIVLYNVCIDC 271
++LF +M + S+ F L+ A+ + D + L + M+N S D+ YN+ I+C
Sbjct: 65 VDLFGEMVQSRPLPSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYNILINC 124
Query: 272 FGKVGKVDMAWKFFHEMKAQGVAPDDVTYTSMIGVLCKSKRLEEAVAMFEQMDRNREVPC 331
F + ++ +A +M G PD VT +S++ C KR+ EAVA+ +QM P
Sbjct: 125 FCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPN 184
Query: 332 AYAYNTMIMGYGSVGKFDEAFSLFERLKQKGCIPSVIAYNSLLTCLGKKGRVTEAMKIFE 391
+NT+I G K EA +L +R+ +GC P + Y +++ L K+G + A+ + +
Sbjct: 185 TVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLK 244
Query: 392 AMKK-DARPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEAGLFPNVMTVNIMVDRLCKAQ 450
M+K + Y +ID LC N DAL M G+ PNV+T N ++ LC
Sbjct: 245 KMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYG 304
Query: 451 KLDEAFSIFEGMDHKTCTPDAVTFCSLIDGLGKNGRVDDAYKFYEKMLDTDQIPNAILYT 510
+ +A + M + P+ VTF +LID K G++ +A K Y++M+ P+ Y+
Sbjct: 305 RWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYS 364
Query: 511 SLIRNFFKHGRKEDGHKIYKEMVQRGCSPDLMLLNTYMDCVFKAGETEKGRALFEEIKAQ 570
SLI F H R ++ +++ M+ + C P+++ NT + KA E+G LF E+ +
Sbjct: 365 SLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQR 424
Query: 571 GFVPDVQSYSILIHGLVKAGFAHETDQLFYAMKKQGCVLDTRAYNTVVDGFCKSGKVNKA 630
G V + +Y+ LI GL +AG ++F M G D Y+ ++DG CK GK+ KA
Sbjct: 425 GLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKA 484
Query: 631 YQLLEEMKTKGHYPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNTVIYSSLIDG 690
+ E ++ P + TY +I+G+ K ++++ + LF KG++ N +IY+++I G
Sbjct: 485 LVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISG 544
Query: 691 FGKVGRIDEAYLIMEELMQKGLTPNAYTWNCLLDALVKAEEISEAFVCFQSMKDLKCTPN 750
F + G +EA + E+ + G PN+ T+N L+ A ++ + + + + M+ +
Sbjct: 545 FCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRARLRDGDKAASAELIKEMRSCGFVGD 604
Query: 751 HVTYSIIINGL 761
T S++IN L
Sbjct: 605 ASTISMVINML 615
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 895 | ||||||
| 255551759 | 901 | pentatricopeptide repeat-containing prot | 1.0 | 0.993 | 0.770 | 0.0 | |
| 359477281 | 898 | PREDICTED: pentatricopeptide repeat-cont | 0.982 | 0.978 | 0.771 | 0.0 | |
| 449432854 | 904 | PREDICTED: pentatricopeptide repeat-cont | 0.998 | 0.988 | 0.752 | 0.0 | |
| 449513353 | 904 | PREDICTED: LOW QUALITY PROTEIN: pentatri | 0.998 | 0.988 | 0.751 | 0.0 | |
| 356499433 | 905 | PREDICTED: pentatricopeptide repeat-cont | 0.950 | 0.940 | 0.765 | 0.0 | |
| 357494939 | 906 | Pentatricopeptide repeat-containing prot | 0.959 | 0.948 | 0.750 | 0.0 | |
| 297829236 | 871 | pentatricopeptide repeat-containing prot | 0.943 | 0.969 | 0.756 | 0.0 | |
| 15231338 | 871 | pentatricopeptide repeat-containing prot | 0.943 | 0.969 | 0.754 | 0.0 | |
| 224107129 | 764 | predicted protein [Populus trichocarpa] | 0.813 | 0.952 | 0.807 | 0.0 | |
| 115471383 | 882 | Os07g0249100 [Oryza sativa Japonica Grou | 0.928 | 0.942 | 0.646 | 0.0 |
| >gi|255551759|ref|XP_002516925.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223544013|gb|EEF45539.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1440 bits (3727), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 694/901 (77%), Positives = 772/901 (85%), Gaps = 6/901 (0%)
Query: 1 MKMLLRNP-GRRLR-----YQIFDISKRLSSWSDGSSFGSDGKVVLFGDGSYQGNSRMND 54
MKMLLR P G LR + I+ S++ S G S G DG+V F D N +
Sbjct: 1 MKMLLRKPAGANLRNGFRFWNIYTNSRKWISIYTGLSSGLDGQVTSFMDADNHENWTKSG 60
Query: 55 WARTVVDDVYNILHAGPWGPAVENALSSLDGMPQPGLVIGVLRRLKDVNLAINYFRWVER 114
A+ VVDDV IL +G WGP VENALS P+ LVIGVLRR KDVN AI+YFRW ER
Sbjct: 61 TAKEVVDDVCKILESGNWGPDVENALSLFVESPKTDLVIGVLRRAKDVNQAISYFRWTER 120
Query: 115 KTDQAHSLEAYNSLLMVMAVSKNFEPLEEILGEMSLAGIGPTNNTCIELVVSCVKSKMLR 174
KTDQA EAY+SLL+VMA + F+ E+ILGEMS+AG GP+ TCIEL++SC+KS LR
Sbjct: 121 KTDQALCPEAYDSLLLVMAKNVKFDYFEQILGEMSIAGFGPSTKTCIELILSCIKSNKLR 180
Query: 175 EAFDIIQTMRKFKFRPAFTAYTTLIGALATVRESNLMLNLFHQMQELGYEVSVHLFTTLI 234
E FD+IQ MRKFKFRPAF+AYTTLIGAL++V+ES++ML LFHQMQELGYEVSVHLFTT+I
Sbjct: 181 EGFDLIQCMRKFKFRPAFSAYTTLIGALSSVQESDIMLTLFHQMQELGYEVSVHLFTTVI 240
Query: 235 RVFAREGRVDDALFLLDEMKNNAFSVDIVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGVA 294
RVFAREGR+D AL LLDEMK+N DIVLYNVCIDCFGK GKVDMAWKFFHE+K+ G+
Sbjct: 241 RVFAREGRLDAALSLLDEMKSNCLHADIVLYNVCIDCFGKAGKVDMAWKFFHEIKSHGLL 300
Query: 295 PDDVTYTSMIGVLCKSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSL 354
PDDVTYTSMIGVLCK RL+EAV +FEQM++NR VPCAYAYNTMIMGYGS GKFDEA+SL
Sbjct: 301 PDDVTYTSMIGVLCKGNRLDEAVEIFEQMEQNRNVPCAYAYNTMIMGYGSAGKFDEAYSL 360
Query: 355 FERLKQKGCIPSVIAYNSLLTCLGKKGRVTEAMKIFEAMKKDARPNNTTYNVLIDMLCKA 414
ER K +GCIPSVIAYN +LTCLGKKGR+ EA++ FE MKKDA PN +TYNVLIDMLCKA
Sbjct: 361 LERQKARGCIPSVIAYNCILTCLGKKGRLGEALRTFEEMKKDAAPNLSTYNVLIDMLCKA 420
Query: 415 GNFEDALKFRDAMKEAGLFPNVMTVNIMVDRLCKAQKLDEAFSIFEGMDHKTCTPDAVTF 474
G E A K RDAMKEAGLFPNVMTVNIM+DRLCKA+KLDEA SIFEGM+HK C+PD VTF
Sbjct: 421 GEVEAAFKVRDAMKEAGLFPNVMTVNIMIDRLCKAKKLDEACSIFEGMNHKICSPDEVTF 480
Query: 475 CSLIDGLGKNGRVDDAYKFYEKMLDTDQIPNAILYTSLIRNFFKHGRKEDGHKIYKEMVQ 534
CSLIDGLGK GRVDDAY+ YE+MLD+D+IPNA++YTSLI++FFK GRKEDGHKI+KEM+
Sbjct: 481 CSLIDGLGKQGRVDDAYRLYEQMLDSDKIPNAVVYTSLIKSFFKCGRKEDGHKIFKEMIH 540
Query: 535 RGCSPDLMLLNTYMDCVFKAGETEKGRALFEEIKAQGFVPDVQSYSILIHGLVKAGFAHE 594
RGCSPDL LLN YMDCVFKAGET KGRALFEEIK++GF+PDV SYSILIHGLVKAGFA E
Sbjct: 541 RGCSPDLRLLNAYMDCVFKAGETGKGRALFEEIKSRGFIPDVMSYSILIHGLVKAGFARE 600
Query: 595 TDQLFYAMKKQGCVLDTRAYNTVVDGFCKSGKVNKAYQLLEEMKTKGHYPTVVTYGSVID 654
T +LFYAMK+QGCVLDT AYNT +DGFCKSGKVNKAYQLLEEMKTKG PTVVTYGSVID
Sbjct: 601 TYELFYAMKEQGCVLDTHAYNTFIDGFCKSGKVNKAYQLLEEMKTKGRQPTVVTYGSVID 660
Query: 655 GLAKIDRLDEAYMLFEEAKSKGIELNTVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTP 714
GLAKIDRLDEAYMLFEEAKS G+ELN VIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTP
Sbjct: 661 GLAKIDRLDEAYMLFEEAKSNGLELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTP 720
Query: 715 NAYTWNCLLDALVKAEEISEAFVCFQSMKDLKCTPNHVTYSIIINGLCRVRKFNKAFVFW 774
N YTWNCLLDALVKAEEI+EA VCFQ+MK+LK TPNH+TYSI+INGLCRVRKFNKAFVFW
Sbjct: 721 NVYTWNCLLDALVKAEEINEALVCFQNMKNLKGTPNHITYSILINGLCRVRKFNKAFVFW 780
Query: 775 QEMQKQGFKPNTITYTTMISGLAKAGNITEANGLFERFKENGGVPDSACYNAMMEGLSNA 834
QEMQKQG KPNTITYTTMI+GLAKAGNI EA+ LFERFK NGGVPDSA YNA++EGLS +
Sbjct: 781 QEMQKQGLKPNTITYTTMIAGLAKAGNIAEASSLFERFKANGGVPDSASYNAIIEGLSYS 840
Query: 835 NRAMDAYTLFEETRRKGFNIHTKTCVILLDALHKAECLEQAAIVGAVLRETAKSQHAARS 894
RAM+AY +FEETR KG NIHTKTC+ LLDAL K ECLEQAAIVGAVLRE AKSQHAARS
Sbjct: 841 RRAMEAYKIFEETRMKGCNIHTKTCIALLDALQKDECLEQAAIVGAVLREIAKSQHAARS 900
Query: 895 W 895
W
Sbjct: 901 W 901
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359477281|ref|XP_003631958.1| PREDICTED: pentatricopeptide repeat-containing protein At3g06920-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1415 bits (3663), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 679/880 (77%), Positives = 755/880 (85%), Gaps = 1/880 (0%)
Query: 16 IFDISKRLSSWSDGSSFGSDGKVVLFGDGSYQGNSRMNDWARTVVDDVYNILHAGPWGPA 75
I I K+ SS +G S DGKVV DG + R N+ R VDDV IL +GPWGP
Sbjct: 20 ISSICKKFSSSCNGPS-EVDGKVVFSADGVDKKIPRNNEGIRKGVDDVCCILESGPWGPT 78
Query: 76 VENALSSLDGMPQPGLVIGVLRRLKDVNLAINYFRWVERKTDQAHSLEAYNSLLMVMAVS 135
+EN+LS+L P P LVIGVL+RLKD N A+NYF+W E++T++ H EAYNSLLMVMA +
Sbjct: 79 LENSLSALGEKPLPELVIGVLKRLKDANTAVNYFQWAEKQTEKVHCPEAYNSLLMVMARN 138
Query: 136 KNFEPLEEILGEMSLAGIGPTNNTCIELVVSCVKSKMLREAFDIIQTMRKFKFRPAFTAY 195
F+ LE IL EMSL+G GP++N IELV +CVKS+ LREAFDIIQTMRKFKFRPAF+AY
Sbjct: 139 TEFDHLERILEEMSLSGFGPSSNISIELVANCVKSRKLREAFDIIQTMRKFKFRPAFSAY 198
Query: 196 TTLIGALATVRESNLMLNLFHQMQELGYEVSVHLFTTLIRVFAREGRVDDALFLLDEMKN 255
T LIGAL+ VRE + ML LFHQMQELGYEV+VHLFTTLIRVFAREGRVD AL LLDEMK+
Sbjct: 199 TILIGALSEVREPDPMLILFHQMQELGYEVNVHLFTTLIRVFAREGRVDAALSLLDEMKS 258
Query: 256 NAFSVDIVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGVAPDDVTYTSMIGVLCKSKRLEE 315
N+ DIVLYNVCIDCFGK GKVDM+WKFFHEMK+ G+ PDDVTYTSMIGVLCK+ RL+E
Sbjct: 259 NSLDADIVLYNVCIDCFGKAGKVDMSWKFFHEMKSHGLMPDDVTYTSMIGVLCKANRLDE 318
Query: 316 AVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLFERLKQKGCIPSVIAYNSLLT 375
AV +FEQ+++NR+VPCAYAYNTMIMGYGS GKFDEA+ L ER K KG IPSVIAYN +LT
Sbjct: 319 AVELFEQLEQNRKVPCAYAYNTMIMGYGSAGKFDEAYGLLERQKAKGSIPSVIAYNCILT 378
Query: 376 CLGKKGRVTEAMKIFEAMKKDARPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEAGLFPN 435
CLGKK RV EA++IFE MK+DA PN TYN+LIDMLC+ G AL+ RD M+ AGLFPN
Sbjct: 379 CLGKKRRVEEALRIFEEMKRDAVPNVPTYNILIDMLCREGKLNAALEIRDDMERAGLFPN 438
Query: 436 VMTVNIMVDRLCKAQKLDEAFSIFEGMDHKTCTPDAVTFCSLIDGLGKNGRVDDAYKFYE 495
V+TVNIM+DRLCKAQKL+EA SIFEGMD K CTP+AVTF SLIDGLGK GRVDDAY YE
Sbjct: 439 VLTVNIMIDRLCKAQKLEEACSIFEGMDDKVCTPNAVTFSSLIDGLGKCGRVDDAYSLYE 498
Query: 496 KMLDTDQIPNAILYTSLIRNFFKHGRKEDGHKIYKEMVQRGCSPDLMLLNTYMDCVFKAG 555
KMLD +P AI+YTSLIR+FFK GRKEDGHKIYKEMV GCSPDL L+NTYMDCVFKAG
Sbjct: 499 KMLDCGHVPGAIVYTSLIRSFFKCGRKEDGHKIYKEMVHTGCSPDLTLINTYMDCVFKAG 558
Query: 556 ETEKGRALFEEIKAQGFVPDVQSYSILIHGLVKAGFAHETDQLFYAMKKQGCVLDTRAYN 615
ETEKGRALF EI A GF+PD +SYSILIHGLVKAG A+ET +LFYAMK+QGCVLDT AYN
Sbjct: 559 ETEKGRALFREINAHGFIPDARSYSILIHGLVKAGLANETYELFYAMKEQGCVLDTHAYN 618
Query: 616 TVVDGFCKSGKVNKAYQLLEEMKTKGHYPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSK 675
V+DGFCKSGKVNKAYQLLEEMK KGH PTVVTYGSVIDGLAKIDRLDEAYMLFEEAKS
Sbjct: 619 AVIDGFCKSGKVNKAYQLLEEMKVKGHPPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSN 678
Query: 676 GIELNTVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNAYTWNCLLDALVKAEEISEA 735
GI+LN V+YSSLIDGFGKVGRIDEAYLIMEELMQKGLTPN YTWNCLLDALVKAEEI+EA
Sbjct: 679 GIKLNVVVYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEINEA 738
Query: 736 FVCFQSMKDLKCTPNHVTYSIIINGLCRVRKFNKAFVFWQEMQKQGFKPNTITYTTMISG 795
+CFQSMKDLKC PN +TYSI+INGLCRVRKFNKAFVFWQEMQK G KPNTITYTTMISG
Sbjct: 739 LICFQSMKDLKCPPNQITYSILINGLCRVRKFNKAFVFWQEMQKLGLKPNTITYTTMISG 798
Query: 796 LAKAGNITEANGLFERFKENGGVPDSACYNAMMEGLSNANRAMDAYTLFEETRRKGFNIH 855
LAKAGNI EA+GLF RFK NGG+PDSA YNAM+EGLS+AN+AMDAY LFEETR KG NIH
Sbjct: 799 LAKAGNILEASGLFSRFKANGGIPDSASYNAMIEGLSSANKAMDAYALFEETRLKGCNIH 858
Query: 856 TKTCVILLDALHKAECLEQAAIVGAVLRETAKSQHAARSW 895
TKTCV+LLDALHKAECLEQAAIVGAVL+ETAKSQHA+RS+
Sbjct: 859 TKTCVVLLDALHKAECLEQAAIVGAVLKETAKSQHASRSF 898
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449432854|ref|XP_004134213.1| PREDICTED: pentatricopeptide repeat-containing protein At3g06920-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1412 bits (3655), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 680/904 (75%), Positives = 770/904 (85%), Gaps = 10/904 (1%)
Query: 1 MKMLLRNPGRRLRYQIFDIS---------KRLSSWSDGSSFGSDGKVVLFGDGSYQGNSR 51
MK+LLRN G + D+ + SSW SS ++G G S
Sbjct: 1 MKILLRNKGAG-QINCLDLKCGNPIKFSVRFFSSWIGDSSQTTNGNGGPVPGGGDLLPSA 59
Query: 52 MNDWARTVVDDVYNILHAGPWGPAVENALSSLDGMPQPGLVIGVLRRLKDVNLAINYFRW 111
N+ R V+D V IL GPWG +VEN L+ LD P P LVIGVLRRLKDVN A+NYFRW
Sbjct: 60 KNENKRQVIDSVCQILETGPWGSSVENRLAELDLNPNPELVIGVLRRLKDVNNAVNYFRW 119
Query: 112 VERKTDQAHSLEAYNSLLMVMAVSKNFEPLEEILGEMSLAGIGPTNNTCIELVVSCVKSK 171
ER TD+AH EAYNSLLMVMA ++ F LE+IL EMS+AG GP+NNTCIE+V+S +KS+
Sbjct: 120 AERLTDRAHCREAYNSLLMVMARTRKFNCLEQILEEMSIAGFGPSNNTCIEIVLSFIKSR 179
Query: 172 MLREAFDIIQTMRKFKFRPAFTAYTTLIGALATVRESNLMLNLFHQMQELGYEVSVHLFT 231
LREAF IQTMRK KFRPAF+AYT LIGAL+T R+S+ ML LF QMQELGY V+VHLFT
Sbjct: 180 KLREAFTFIQTMRKLKFRPAFSAYTNLIGALSTSRDSDCMLTLFQQMQELGYAVNVHLFT 239
Query: 232 TLIRVFAREGRVDDALFLLDEMKNNAFSVDIVLYNVCIDCFGKVGKVDMAWKFFHEMKAQ 291
TLIRVFAREGRVD AL LLDEMK+N+ D+VLYNVCIDCFGK GKVDMAWKFFHEMKA
Sbjct: 240 TLIRVFAREGRVDAALSLLDEMKSNSLEPDVVLYNVCIDCFGKAGKVDMAWKFFHEMKAN 299
Query: 292 GVAPDDVTYTSMIGVLCKSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFDEA 351
G+ DDVTYTSMIGVLCK+ RL EAV +FE MD+N++VPCAYAYNTMIMGYG GKF++A
Sbjct: 300 GLVLDDVTYTSMIGVLCKADRLNEAVELFEHMDQNKQVPCAYAYNTMIMGYGMAGKFEDA 359
Query: 352 FSLFERLKQKGCIPSVIAYNSLLTCLGKKGRVTEAMKIFEAMKKDARPNNTTYNVLIDML 411
+SL ER ++KGCIPSV++YN +L+CLG+KG+V EA+K FE MKKDA PN +TYN++IDML
Sbjct: 360 YSLLERQRRKGCIPSVVSYNCILSCLGRKGQVDEALKKFEEMKKDAIPNLSTYNIMIDML 419
Query: 412 CKAGNFEDALKFRDAMKEAGLFPNVMTVNIMVDRLCKAQKLDEAFSIFEGMDHKTCTPDA 471
CKAG E AL RDAMK+AGLFPNV+TVNIMVDRLCKAQ+LD+A SIFEG+DHKTC PDA
Sbjct: 420 CKAGKLETALVVRDAMKDAGLFPNVITVNIMVDRLCKAQRLDDACSIFEGLDHKTCRPDA 479
Query: 472 VTFCSLIDGLGKNGRVDDAYKFYEKMLDTDQIPNAILYTSLIRNFFKHGRKEDGHKIYKE 531
VT+CSLI+GLG++GRVD+AYK YE+MLD +QIPNA++YTSLIRNFFK GRKEDGHKIY E
Sbjct: 480 VTYCSLIEGLGRHGRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFKCGRKEDGHKIYNE 539
Query: 532 MVQRGCSPDLMLLNTYMDCVFKAGETEKGRALFEEIKAQGFVPDVQSYSILIHGLVKAGF 591
M++ GCSPDL+LLNTYMDCVFKAGE EKGRALF+EIK GF+PD +SY+ILIHGLVKAGF
Sbjct: 540 MLRLGCSPDLLLLNTYMDCVFKAGEIEKGRALFQEIKNLGFIPDARSYTILIHGLVKAGF 599
Query: 592 AHETDQLFYAMKKQGCVLDTRAYNTVVDGFCKSGKVNKAYQLLEEMKTKGHYPTVVTYGS 651
AHE +LFY MK+QGCVLDTRAYNTV+DGFCKSGKVNKAYQLLEEMKTKGH PTVVTYGS
Sbjct: 600 AHEAYELFYTMKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTKGHEPTVVTYGS 659
Query: 652 VIDGLAKIDRLDEAYMLFEEAKSKGIELNTVIYSSLIDGFGKVGRIDEAYLIMEELMQKG 711
VIDGLAKIDRLDEAYMLFEEAKSKGIELN VIYSSLIDGFGKVGRIDEAYLIMEELMQKG
Sbjct: 660 VIDGLAKIDRLDEAYMLFEEAKSKGIELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKG 719
Query: 712 LTPNAYTWNCLLDALVKAEEISEAFVCFQSMKDLKCTPNHVTYSIIINGLCRVRKFNKAF 771
LTPN YTWNCLLDALVKAEEISEA VCFQSMKDLKCTPN++TYSI+I+GLC++RKFNKAF
Sbjct: 720 LTPNVYTWNCLLDALVKAEEISEALVCFQSMKDLKCTPNYITYSILIHGLCKIRKFNKAF 779
Query: 772 VFWQEMQKQGFKPNTITYTTMISGLAKAGNITEANGLFERFKENGGVPDSACYNAMMEGL 831
VFWQEMQKQGFKPN TYTTMISGLAKAGNI EA+ LFE+FKE GGV DSA YNA++EGL
Sbjct: 780 VFWQEMQKQGFKPNVFTYTTMISGLAKAGNIVEADTLFEKFKEKGGVADSAIYNAIIEGL 839
Query: 832 SNANRAMDAYTLFEETRRKGFNIHTKTCVILLDALHKAECLEQAAIVGAVLRETAKSQHA 891
SNANRA DAY LFEE R KG +I+TKTCV+LLD+LHKAEC+EQAAIVGAVLRETAK+QHA
Sbjct: 840 SNANRASDAYRLFEEARLKGCSIYTKTCVVLLDSLHKAECIEQAAIVGAVLRETAKAQHA 899
Query: 892 ARSW 895
ARSW
Sbjct: 900 ARSW 903
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449513353|ref|XP_004164304.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At3g06920-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1410 bits (3649), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 679/904 (75%), Positives = 769/904 (85%), Gaps = 10/904 (1%)
Query: 1 MKMLLRNPGRRLRYQIFDIS---------KRLSSWSDGSSFGSDGKVVLFGDGSYQGNSR 51
MK+LLRN G + D+ + SSW SS ++G G S
Sbjct: 1 MKILLRNKGAG-QINCLDLKCGNPIKFSVRFFSSWIGDSSQTTNGNGGPVPGGGDLLPSA 59
Query: 52 MNDWARTVVDDVYNILHAGPWGPAVENALSSLDGMPQPGLVIGVLRRLKDVNLAINYFRW 111
N+ R V+D V IL GPWG +VEN L+ LD P P LVIGVLRRLKDVN A+NYFRW
Sbjct: 60 KNENKRQVIDSVCQILETGPWGSSVENRLAELDLNPNPELVIGVLRRLKDVNNAVNYFRW 119
Query: 112 VERKTDQAHSLEAYNSLLMVMAVSKNFEPLEEILGEMSLAGIGPTNNTCIELVVSCVKSK 171
ER TD+AH EAYNSLLMVMA ++ F LE+IL EMS+AG GP+NNTCIE+V+S +KS+
Sbjct: 120 AERLTDRAHCREAYNSLLMVMARTRKFNCLEQILEEMSIAGFGPSNNTCIEIVLSFIKSR 179
Query: 172 MLREAFDIIQTMRKFKFRPAFTAYTTLIGALATVRESNLMLNLFHQMQELGYEVSVHLFT 231
LREAF IQTMRK KFRPAF+AYT LIGAL+T R+S+ ML LF QMQELGY V+VHLFT
Sbjct: 180 KLREAFTFIQTMRKLKFRPAFSAYTNLIGALSTSRDSDCMLTLFQQMQELGYAVNVHLFT 239
Query: 232 TLIRVFAREGRVDDALFLLDEMKNNAFSVDIVLYNVCIDCFGKVGKVDMAWKFFHEMKAQ 291
TLIRVFAREGRVD AL LLDEMK+N+ D+VLYNVCIDCFGK GKVDMAWK FHEMKA
Sbjct: 240 TLIRVFAREGRVDAALSLLDEMKSNSLEPDVVLYNVCIDCFGKAGKVDMAWKXFHEMKAN 299
Query: 292 GVAPDDVTYTSMIGVLCKSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFDEA 351
G+ DDVTYTSMIGVLCK+ RL EAV +FE MD+N++VPCAYAYNTMIMGYG GKF++A
Sbjct: 300 GLVLDDVTYTSMIGVLCKADRLNEAVELFEHMDQNKQVPCAYAYNTMIMGYGMAGKFEDA 359
Query: 352 FSLFERLKQKGCIPSVIAYNSLLTCLGKKGRVTEAMKIFEAMKKDARPNNTTYNVLIDML 411
+SL ER ++KGCIPSV++YN +L+CLG+KG+V EA+K FE MKKDA PN +TYN++IDML
Sbjct: 360 YSLLERQRRKGCIPSVVSYNCILSCLGRKGQVDEALKKFEEMKKDAIPNLSTYNIMIDML 419
Query: 412 CKAGNFEDALKFRDAMKEAGLFPNVMTVNIMVDRLCKAQKLDEAFSIFEGMDHKTCTPDA 471
CKAG E AL RDAMK+AGLFPNV+TVNIMVDRLCKAQ+LD+A SIFEG+DHKTC PDA
Sbjct: 420 CKAGKLETALVVRDAMKDAGLFPNVITVNIMVDRLCKAQRLDDACSIFEGLDHKTCRPDA 479
Query: 472 VTFCSLIDGLGKNGRVDDAYKFYEKMLDTDQIPNAILYTSLIRNFFKHGRKEDGHKIYKE 531
VT+CSLI+GLG++GRVD+AYK YE+MLD +QIPNA++YTSLIRNFFK GRKEDGHKIY E
Sbjct: 480 VTYCSLIEGLGRHGRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFKCGRKEDGHKIYNE 539
Query: 532 MVQRGCSPDLMLLNTYMDCVFKAGETEKGRALFEEIKAQGFVPDVQSYSILIHGLVKAGF 591
M++ GCSPDL+LLNTYMDCVFKAGE EKGRALF+EIK GF+PD +SY+ILIHGLVKAGF
Sbjct: 540 MLRLGCSPDLLLLNTYMDCVFKAGEIEKGRALFQEIKNLGFIPDARSYTILIHGLVKAGF 599
Query: 592 AHETDQLFYAMKKQGCVLDTRAYNTVVDGFCKSGKVNKAYQLLEEMKTKGHYPTVVTYGS 651
AHE +LFY MK+QGCVLDTRAYNTV+DGFCKSGKVNKAYQLLEEMKTKGH PTVVTYGS
Sbjct: 600 AHEAYELFYTMKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTKGHEPTVVTYGS 659
Query: 652 VIDGLAKIDRLDEAYMLFEEAKSKGIELNTVIYSSLIDGFGKVGRIDEAYLIMEELMQKG 711
VIDGLAKIDRLDEAYMLFEEAKSKGIELN VIYSSLIDGFGKVGRIDEAYLIMEELMQKG
Sbjct: 660 VIDGLAKIDRLDEAYMLFEEAKSKGIELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKG 719
Query: 712 LTPNAYTWNCLLDALVKAEEISEAFVCFQSMKDLKCTPNHVTYSIIINGLCRVRKFNKAF 771
LTPN YTWNCLLDALVKAEEISEA VCFQSMKDLKCTPN++TYSI+I+GLC++RKFNKAF
Sbjct: 720 LTPNVYTWNCLLDALVKAEEISEALVCFQSMKDLKCTPNYITYSILIHGLCKIRKFNKAF 779
Query: 772 VFWQEMQKQGFKPNTITYTTMISGLAKAGNITEANGLFERFKENGGVPDSACYNAMMEGL 831
VFWQEMQKQGFKPN TYTTMISGLAKAGNI EA+ LFE+FKE GGV DSA YNA++EGL
Sbjct: 780 VFWQEMQKQGFKPNVFTYTTMISGLAKAGNIVEADTLFEKFKEKGGVADSAIYNAIIEGL 839
Query: 832 SNANRAMDAYTLFEETRRKGFNIHTKTCVILLDALHKAECLEQAAIVGAVLRETAKSQHA 891
SNANRA DAY LFEE R KG +I+TKTCV+LLD+LHKAEC+EQAAIVGAVLRETAK+QHA
Sbjct: 840 SNANRASDAYRLFEEARLKGCSIYTKTCVVLLDSLHKAECIEQAAIVGAVLRETAKAQHA 899
Query: 892 ARSW 895
ARSW
Sbjct: 900 ARSW 903
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356499433|ref|XP_003518545.1| PREDICTED: pentatricopeptide repeat-containing protein At3g06920-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1393 bits (3605), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 652/852 (76%), Positives = 751/852 (88%), Gaps = 1/852 (0%)
Query: 43 DGSY-QGNSRMNDWARTVVDDVYNILHAGPWGPAVENALSSLDGMPQPGLVIGVLRRLKD 101
D S+ Q N+ ++ R V DV +L PWG A+E+AL++ D MPQP LV+GV+RRLKD
Sbjct: 52 DASHSQDNALKSEGMRKTVHDVCRVLDTYPWGAALEDALNTFDEMPQPELVVGVIRRLKD 111
Query: 102 VNLAINYFRWVERKTDQAHSLEAYNSLLMVMAVSKNFEPLEEILGEMSLAGIGPTNNTCI 161
V +A++YFRWVERKT Q HS EAYN+LLM+MA ++N E LE+IL EMS+AG GP+NNTCI
Sbjct: 112 VRVALHYFRWVERKTKQLHSPEAYNALLMLMARTRNLEYLEQILEEMSMAGFGPSNNTCI 171
Query: 162 ELVVSCVKSKMLREAFDIIQTMRKFKFRPAFTAYTTLIGALATVRESNLMLNLFHQMQEL 221
E+V S VKS+ LREAF +I+TMRKFKFRPA++AYTTLIGAL+ E++ ML L QMQE+
Sbjct: 172 EMVASFVKSRKLREAFGVIETMRKFKFRPAYSAYTTLIGALSAAHEADPMLTLLRQMQEI 231
Query: 222 GYEVSVHLFTTLIRVFAREGRVDDALFLLDEMKNNAFSVDIVLYNVCIDCFGKVGKVDMA 281
GYEV+VHLFTTLI VFAREGRVD AL LLDEMK+N+F+ D+VLYNVCIDCFGKVGKVDMA
Sbjct: 232 GYEVTVHLFTTLICVFAREGRVDAALSLLDEMKSNSFNADLVLYNVCIDCFGKVGKVDMA 291
Query: 282 WKFFHEMKAQGVAPDDVTYTSMIGVLCKSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMG 341
WKFFHE+K+QG+ PDDVT+TSMIGVLCK++R++EAV +FE++D N+ VPC YAYNTMIMG
Sbjct: 292 WKFFHELKSQGLVPDDVTFTSMIGVLCKAERVDEAVELFEELDSNKSVPCVYAYNTMIMG 351
Query: 342 YGSVGKFDEAFSLFERLKQKGCIPSVIAYNSLLTCLGKKGRVTEAMKIFEAMKKDARPNN 401
YGSVGKF+EA+SL ER K+KGCIPSVIAYN +LTCLG+KG+V EA++I EAMK DA PN
Sbjct: 352 YGSVGKFNEAYSLLERQKRKGCIPSVIAYNCILTCLGRKGKVEEALRILEAMKMDAAPNL 411
Query: 402 TTYNVLIDMLCKAGNFEDALKFRDAMKEAGLFPNVMTVNIMVDRLCKAQKLDEAFSIFEG 461
T+YN+LIDMLCKAG E ALK +D+MKEAGLFPN++TVNIM+DRLCKAQ+LDEA SIF G
Sbjct: 412 TSYNILIDMLCKAGELEAALKVQDSMKEAGLFPNIITVNIMIDRLCKAQRLDEACSIFLG 471
Query: 462 MDHKTCTPDAVTFCSLIDGLGKNGRVDDAYKFYEKMLDTDQIPNAILYTSLIRNFFKHGR 521
+DHK CTPD+VTFCSLIDGLG++G+V+DAY YEKMLD+ Q PNA++YTSLIRNFFK GR
Sbjct: 472 LDHKVCTPDSVTFCSLIDGLGRHGKVNDAYMLYEKMLDSGQTPNAVVYTSLIRNFFKCGR 531
Query: 522 KEDGHKIYKEMVQRGCSPDLMLLNTYMDCVFKAGETEKGRALFEEIKAQGFVPDVQSYSI 581
KEDGHKIYKEM+ RGCSPDLMLLN YMDCVFKAGE EKGRALFEEIKAQG PDV+SYSI
Sbjct: 532 KEDGHKIYKEMMHRGCSPDLMLLNNYMDCVFKAGEIEKGRALFEEIKAQGLTPDVRSYSI 591
Query: 582 LIHGLVKAGFAHETDQLFYAMKKQGCVLDTRAYNTVVDGFCKSGKVNKAYQLLEEMKTKG 641
LIHGLVK GF+ +T +LFY MK+QG LDTRAYN V+DGFCKSGKVNKAYQLLEEMKTKG
Sbjct: 592 LIHGLVKGGFSKDTYKLFYEMKEQGLHLDTRAYNIVIDGFCKSGKVNKAYQLLEEMKTKG 651
Query: 642 HYPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNTVIYSSLIDGFGKVGRIDEAY 701
PTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSK ++LN V+YSSLIDGFGKVGRIDEAY
Sbjct: 652 LQPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKAVDLNVVVYSSLIDGFGKVGRIDEAY 711
Query: 702 LIMEELMQKGLTPNAYTWNCLLDALVKAEEISEAFVCFQSMKDLKCTPNHVTYSIIINGL 761
LI+EELMQKGLTPN YTWNCLLDALVKAEEI EA VCFQ+MK+LKC PN VTYSI++NGL
Sbjct: 712 LILEELMQKGLTPNTYTWNCLLDALVKAEEIDEALVCFQNMKNLKCPPNEVTYSIMVNGL 771
Query: 762 CRVRKFNKAFVFWQEMQKQGFKPNTITYTTMISGLAKAGNITEANGLFERFKENGGVPDS 821
C+VRKFNKAFVFWQEMQKQG KPNTITYTTMISGLA+ GN+ EA LFERFK +GG+PDS
Sbjct: 772 CKVRKFNKAFVFWQEMQKQGLKPNTITYTTMISGLARVGNVLEAKDLFERFKSSGGIPDS 831
Query: 822 ACYNAMMEGLSNANRAMDAYTLFEETRRKGFNIHTKTCVILLDALHKAECLEQAAIVGAV 881
ACYNAM+EGLSNAN+AMDAY LFEETR KG I++KTCV+LLDALHKA+CLEQAAIVGAV
Sbjct: 832 ACYNAMIEGLSNANKAMDAYILFEETRLKGCRIYSKTCVVLLDALHKADCLEQAAIVGAV 891
Query: 882 LRETAKSQHAAR 893
LRE AKSQHA R
Sbjct: 892 LREMAKSQHATR 903
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357494939|ref|XP_003617758.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355519093|gb|AET00717.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1373 bits (3555), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 645/859 (75%), Positives = 744/859 (86%)
Query: 35 DGKVVLFGDGSYQGNSRMNDWARTVVDDVYNILHAGPWGPAVENALSSLDGMPQPGLVIG 94
+GKV F + +Y+ N + R V D+ +L G WGP VE AL+ D M QP +++G
Sbjct: 46 NGKVSPFMNDNYEKNEAKVEGMRKTVYDLCGVLENGLWGPDVEEALNVFDEMSQPEVIVG 105
Query: 95 VLRRLKDVNLAINYFRWVERKTDQAHSLEAYNSLLMVMAVSKNFEPLEEILGEMSLAGIG 154
V++RLKDVN+A YFRWVERKT QAH E YN+ LMVMA ++N + LE+IL EMS+AG G
Sbjct: 106 VMKRLKDVNVAFQYFRWVERKTQQAHCPEVYNAFLMVMARTRNLDYLEQILEEMSVAGFG 165
Query: 155 PTNNTCIELVVSCVKSKMLREAFDIIQTMRKFKFRPAFTAYTTLIGALATVRESNLMLNL 214
+N+ +ELV S VKS L+EAF +I+ MRKFKFRPAF+AYTTLIGAL+ + ML L
Sbjct: 166 LSNHVSVELVASFVKSHKLKEAFGVIEMMRKFKFRPAFSAYTTLIGALSAANRPDPMLTL 225
Query: 215 FHQMQELGYEVSVHLFTTLIRVFAREGRVDDALFLLDEMKNNAFSVDIVLYNVCIDCFGK 274
FHQMQE+GYE +VHLFTTL+RVFAREGR+D AL LLDEMK+N+F+ D+VLYNVCIDCFGK
Sbjct: 226 FHQMQEIGYEANVHLFTTLVRVFAREGRIDAALSLLDEMKSNSFTADLVLYNVCIDCFGK 285
Query: 275 VGKVDMAWKFFHEMKAQGVAPDDVTYTSMIGVLCKSKRLEEAVAMFEQMDRNREVPCAYA 334
VGKVDMAWKFFHEMKAQG+ PDDVTYT++IGVLCK++RL+EAV +FE++D NR VPC YA
Sbjct: 286 VGKVDMAWKFFHEMKAQGLVPDDVTYTTLIGVLCKARRLDEAVELFEELDLNRSVPCVYA 345
Query: 335 YNTMIMGYGSVGKFDEAFSLFERLKQKGCIPSVIAYNSLLTCLGKKGRVTEAMKIFEAMK 394
YNTMIMGYGS GKFDEA+SL ER K+KGCIPSVIAYN +LTCLG+KG+V EA++I + M+
Sbjct: 346 YNTMIMGYGSAGKFDEAYSLLERQKRKGCIPSVIAYNCILTCLGRKGKVEEALRIHDEMR 405
Query: 395 KDARPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEAGLFPNVMTVNIMVDRLCKAQKLDE 454
+DA PN TTYN+LIDMLCKAG E ALK +D MKEAGLFPN+MTVNIM+DRLCKAQKLDE
Sbjct: 406 QDAAPNLTTYNILIDMLCKAGELEAALKVQDTMKEAGLFPNIMTVNIMIDRLCKAQKLDE 465
Query: 455 AFSIFEGMDHKTCTPDAVTFCSLIDGLGKNGRVDDAYKFYEKMLDTDQIPNAILYTSLIR 514
A SIF G+DHK C+PD+ TFCSLIDGLG+ GRVDDAY YEKMLD+DQIPN ++YTSLI+
Sbjct: 466 ACSIFLGLDHKVCSPDSRTFCSLIDGLGRRGRVDDAYSLYEKMLDSDQIPNVVVYTSLIQ 525
Query: 515 NFFKHGRKEDGHKIYKEMVQRGCSPDLMLLNTYMDCVFKAGETEKGRALFEEIKAQGFVP 574
NFFK GRKEDGHKIYKEMV RGCSPDLMLLN+YMDCVFKAGE EKGRALFEEIKAQG VP
Sbjct: 526 NFFKCGRKEDGHKIYKEMVHRGCSPDLMLLNSYMDCVFKAGEVEKGRALFEEIKAQGLVP 585
Query: 575 DVQSYSILIHGLVKAGFAHETDQLFYAMKKQGCVLDTRAYNTVVDGFCKSGKVNKAYQLL 634
DV+SYSILIHGLVKAGF+ ET +LFY MK+QG LD AYNTV+DGFCKSGKV+KAYQLL
Sbjct: 586 DVRSYSILIHGLVKAGFSRETYKLFYEMKEQGLHLDVLAYNTVIDGFCKSGKVDKAYQLL 645
Query: 635 EEMKTKGHYPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNTVIYSSLIDGFGKV 694
EEMKTKG PTVVTYGSV+DGLAKIDRLDEAYMLFEEAKS G++LN VIYSSLIDGFGKV
Sbjct: 646 EEMKTKGLQPTVVTYGSVVDGLAKIDRLDEAYMLFEEAKSIGVDLNVVIYSSLIDGFGKV 705
Query: 695 GRIDEAYLIMEELMQKGLTPNAYTWNCLLDALVKAEEISEAFVCFQSMKDLKCTPNHVTY 754
GRIDEAYLI+EELMQKGLTPN+YTWNCLLDALVKAEEI EA VCFQ+MK+LKC+PN +TY
Sbjct: 706 GRIDEAYLILEELMQKGLTPNSYTWNCLLDALVKAEEIDEAQVCFQNMKNLKCSPNAMTY 765
Query: 755 SIIINGLCRVRKFNKAFVFWQEMQKQGFKPNTITYTTMISGLAKAGNITEANGLFERFKE 814
SI+INGLC +RKFNKAFVFWQEMQKQG KPN ITYTTMI+GLAKAGN+ EA GLF+RFK
Sbjct: 766 SIMINGLCMIRKFNKAFVFWQEMQKQGLKPNNITYTTMIAGLAKAGNVMEARGLFDRFKA 825
Query: 815 NGGVPDSACYNAMMEGLSNANRAMDAYTLFEETRRKGFNIHTKTCVILLDALHKAECLEQ 874
+GGVPDSACYNAM+EGLS+AN+AMDAY +FEETR KG +++KTCV+LLDALHKA+CLEQ
Sbjct: 826 SGGVPDSACYNAMIEGLSSANKAMDAYIVFEETRLKGCRVNSKTCVVLLDALHKADCLEQ 885
Query: 875 AAIVGAVLRETAKSQHAAR 893
AAIVGAVLRE AKSQHA R
Sbjct: 886 AAIVGAVLREMAKSQHATR 904
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297829236|ref|XP_002882500.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297328340|gb|EFH58759.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1373 bits (3555), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 644/851 (75%), Positives = 740/851 (86%), Gaps = 7/851 (0%)
Query: 45 SYQGNSRMNDWARTVVDDVYNILHAGPWGPAVENALSSLDGMPQPGLVIGVLRRLKDVNL 104
+++GN R +V+D+ N+L G WGP+ ENALS+L+ PQP VIGVLRRLKDVN
Sbjct: 28 TFEGN-------RQIVNDICNVLETGAWGPSAENALSALNFKPQPEFVIGVLRRLKDVNR 80
Query: 105 AINYFRWVERKTDQAHSLEAYNSLLMVMAVSKNFEPLEEILGEMSLAGIGPTNNTCIELV 164
AI YFRW ER+T+ H E+YNSLL+VMA +NF+ L++ILGEMS+AG GP+ NTCIE+V
Sbjct: 81 AIEYFRWYERRTELPHCPESYNSLLLVMARCRNFDALDQILGEMSVAGFGPSVNTCIEMV 140
Query: 165 VSCVKSKMLREAFDIIQTMRKFKFRPAFTAYTTLIGALATVRESNLMLNLFHQMQELGYE 224
+SCVK+ LRE FD++Q MRKFKFRPAF+AYTTLIGA + V S++ML LF QMQELGYE
Sbjct: 141 LSCVKANKLREGFDVVQNMRKFKFRPAFSAYTTLIGAFSAVNHSDMMLTLFQQMQELGYE 200
Query: 225 VSVHLFTTLIRVFAREGRVDDALFLLDEMKNNAFSVDIVLYNVCIDCFGKVGKVDMAWKF 284
+VHLFTTLIR FA+EGRVD AL LLDEMK+++ DIVLYNVCID FGKVGKVDMAWKF
Sbjct: 201 PTVHLFTTLIRGFAKEGRVDSALSLLDEMKSSSLDADIVLYNVCIDSFGKVGKVDMAWKF 260
Query: 285 FHEMKAQGVAPDDVTYTSMIGVLCKSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGS 344
FHE++A G+ PD+VTYTSMIGVLCK+ RL+EAV MFE +++NR VPC YAYNTMIMGYGS
Sbjct: 261 FHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGS 320
Query: 345 VGKFDEAFSLFERLKQKGCIPSVIAYNSLLTCLGKKGRVTEAMKIFEAMKKDARPNNTTY 404
GKFDEA+SL ER + KG IPSVIAYN +LTCL K G+V EA+++FE MKKDA PN +TY
Sbjct: 321 AGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMGKVDEALRVFEEMKKDAAPNLSTY 380
Query: 405 NVLIDMLCKAGNFEDALKFRDAMKEAGLFPNVMTVNIMVDRLCKAQKLDEAFSIFEGMDH 464
N+LIDMLC+AG + A + RD+M++AGLFPNV TVNIMVDRLCK+QKLDEA +IFE MD+
Sbjct: 381 NILIDMLCRAGKLDCAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEACAIFEQMDY 440
Query: 465 KTCTPDAVTFCSLIDGLGKNGRVDDAYKFYEKMLDTDQIPNAILYTSLIRNFFKHGRKED 524
K CTPD +TFCSLIDGLGK GRVDDAYK YEKMLD+D N+I+YTSLI+NFF HGRKED
Sbjct: 441 KVCTPDEITFCSLIDGLGKVGRVDDAYKIYEKMLDSDCRTNSIVYTSLIKNFFNHGRKED 500
Query: 525 GHKIYKEMVQRGCSPDLMLLNTYMDCVFKAGETEKGRALFEEIKAQGFVPDVQSYSILIH 584
GHKIYK+MV + CSPDL LLNTYMDC+FKAGE EKGRA+FEEIK++ FVPD +SYSILIH
Sbjct: 501 GHKIYKDMVNQNCSPDLQLLNTYMDCMFKAGEPEKGRAMFEEIKSRRFVPDARSYSILIH 560
Query: 585 GLVKAGFAHETDQLFYAMKKQGCVLDTRAYNTVVDGFCKSGKVNKAYQLLEEMKTKGHYP 644
GL+KAGFA+ET +LFY+MK+QGCVLDTRAYN V+DGFCK GKVNKAYQLLEEMKTKG P
Sbjct: 561 GLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEP 620
Query: 645 TVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNTVIYSSLIDGFGKVGRIDEAYLIM 704
TVVTYGSVIDGLAKIDRLDEAYMLFEEAKSK IELN VIYSSLIDGFGKVGRIDEAYLI+
Sbjct: 621 TVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLIL 680
Query: 705 EELMQKGLTPNAYTWNCLLDALVKAEEISEAFVCFQSMKDLKCTPNHVTYSIIINGLCRV 764
EELMQKGLTPN YTWN LLDALVKAEEI+EA VCFQSMK+LKCTPN VTY I+INGLC+V
Sbjct: 681 EELMQKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKELKCTPNQVTYGILINGLCKV 740
Query: 765 RKFNKAFVFWQEMQKQGFKPNTITYTTMISGLAKAGNITEANGLFERFKENGGVPDSACY 824
RKFNKAFVFWQEMQKQG KP+TI+YTTMISGLAKAGNI EA LF+RFK NGGVPDSACY
Sbjct: 741 RKFNKAFVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEAGALFDRFKANGGVPDSACY 800
Query: 825 NAMMEGLSNANRAMDAYTLFEETRRKGFNIHTKTCVILLDALHKAECLEQAAIVGAVLRE 884
NAM+EGLSN NRAMDA++LFEETRR+G +IH KTCV+LLD LHK +CLEQAAIVGAVLRE
Sbjct: 801 NAMIEGLSNGNRAMDAFSLFEETRRRGLHIHNKTCVVLLDTLHKNDCLEQAAIVGAVLRE 860
Query: 885 TAKSQHAARSW 895
T K++HAARSW
Sbjct: 861 TGKARHAARSW 871
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15231338|ref|NP_187348.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75186627|sp|Q9M907.1|PP217_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g06920 gi|6728999|gb|AAF26996.1|AC016827_7 hypothetical protein [Arabidopsis thaliana] gi|332640955|gb|AEE74476.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1369 bits (3544), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 642/851 (75%), Positives = 736/851 (86%), Gaps = 7/851 (0%)
Query: 45 SYQGNSRMNDWARTVVDDVYNILHAGPWGPAVENALSSLDGMPQPGLVIGVLRRLKDVNL 104
+++GN R V+D+ N+L GPWGP+ EN LS+L PQP VIGVLRRLKDVN
Sbjct: 28 TFEGN-------RQTVNDICNVLETGPWGPSAENTLSALSFKPQPEFVIGVLRRLKDVNR 80
Query: 105 AINYFRWVERKTDQAHSLEAYNSLLMVMAVSKNFEPLEEILGEMSLAGIGPTNNTCIELV 164
AI YFRW ER+T+ H E+YNSLL+VMA +NF+ L++ILGEMS+AG GP+ NTCIE+V
Sbjct: 81 AIEYFRWYERRTELPHCPESYNSLLLVMARCRNFDALDQILGEMSVAGFGPSVNTCIEMV 140
Query: 165 VSCVKSKMLREAFDIIQTMRKFKFRPAFTAYTTLIGALATVRESNLMLNLFHQMQELGYE 224
+ CVK+ LRE +D++Q MRKFKFRPAF+AYTTLIGA + V S++ML LF QMQELGYE
Sbjct: 141 LGCVKANKLREGYDVVQMMRKFKFRPAFSAYTTLIGAFSAVNHSDMMLTLFQQMQELGYE 200
Query: 225 VSVHLFTTLIRVFAREGRVDDALFLLDEMKNNAFSVDIVLYNVCIDCFGKVGKVDMAWKF 284
+VHLFTTLIR FA+EGRVD AL LLDEMK+++ DIVLYNVCID FGKVGKVDMAWKF
Sbjct: 201 PTVHLFTTLIRGFAKEGRVDSALSLLDEMKSSSLDADIVLYNVCIDSFGKVGKVDMAWKF 260
Query: 285 FHEMKAQGVAPDDVTYTSMIGVLCKSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGS 344
FHE++A G+ PD+VTYTSMIGVLCK+ RL+EAV MFE +++NR VPC YAYNTMIMGYGS
Sbjct: 261 FHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGS 320
Query: 345 VGKFDEAFSLFERLKQKGCIPSVIAYNSLLTCLGKKGRVTEAMKIFEAMKKDARPNNTTY 404
GKFDEA+SL ER + KG IPSVIAYN +LTCL K G+V EA+K+FE MKKDA PN +TY
Sbjct: 321 AGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMGKVDEALKVFEEMKKDAAPNLSTY 380
Query: 405 NVLIDMLCKAGNFEDALKFRDAMKEAGLFPNVMTVNIMVDRLCKAQKLDEAFSIFEGMDH 464
N+LIDMLC+AG + A + RD+M++AGLFPNV TVNIMVDRLCK+QKLDEA ++FE MD+
Sbjct: 381 NILIDMLCRAGKLDTAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEACAMFEEMDY 440
Query: 465 KTCTPDAVTFCSLIDGLGKNGRVDDAYKFYEKMLDTDQIPNAILYTSLIRNFFKHGRKED 524
K CTPD +TFCSLIDGLGK GRVDDAYK YEKMLD+D N+I+YTSLI+NFF HGRKED
Sbjct: 441 KVCTPDEITFCSLIDGLGKVGRVDDAYKVYEKMLDSDCRTNSIVYTSLIKNFFNHGRKED 500
Query: 525 GHKIYKEMVQRGCSPDLMLLNTYMDCVFKAGETEKGRALFEEIKAQGFVPDVQSYSILIH 584
GHKIYK+M+ + CSPDL LLNTYMDC+FKAGE EKGRA+FEEIKA+ FVPD +SYSILIH
Sbjct: 501 GHKIYKDMINQNCSPDLQLLNTYMDCMFKAGEPEKGRAMFEEIKARRFVPDARSYSILIH 560
Query: 585 GLVKAGFAHETDQLFYAMKKQGCVLDTRAYNTVVDGFCKSGKVNKAYQLLEEMKTKGHYP 644
GL+KAGFA+ET +LFY+MK+QGCVLDTRAYN V+DGFCK GKVNKAYQLLEEMKTKG P
Sbjct: 561 GLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEP 620
Query: 645 TVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNTVIYSSLIDGFGKVGRIDEAYLIM 704
TVVTYGSVIDGLAKIDRLDEAYMLFEEAKSK IELN VIYSSLIDGFGKVGRIDEAYLI+
Sbjct: 621 TVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLIL 680
Query: 705 EELMQKGLTPNAYTWNCLLDALVKAEEISEAFVCFQSMKDLKCTPNHVTYSIIINGLCRV 764
EELMQKGLTPN YTWN LLDALVKAEEI+EA VCFQSMK+LKCTPN VTY I+INGLC+V
Sbjct: 681 EELMQKGLTPNLYTWNSLLDALVKAEEINEALVCFQSMKELKCTPNQVTYGILINGLCKV 740
Query: 765 RKFNKAFVFWQEMQKQGFKPNTITYTTMISGLAKAGNITEANGLFERFKENGGVPDSACY 824
RKFNKAFVFWQEMQKQG KP+TI+YTTMISGLAKAGNI EA LF+RFK NGGVPDSACY
Sbjct: 741 RKFNKAFVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEAGALFDRFKANGGVPDSACY 800
Query: 825 NAMMEGLSNANRAMDAYTLFEETRRKGFNIHTKTCVILLDALHKAECLEQAAIVGAVLRE 884
NAM+EGLSN NRAMDA++LFEETRR+G IH KTCV+LLD LHK +CLEQAAIVGAVLRE
Sbjct: 801 NAMIEGLSNGNRAMDAFSLFEETRRRGLPIHNKTCVVLLDTLHKNDCLEQAAIVGAVLRE 860
Query: 885 TAKSQHAARSW 895
T K++HAARSW
Sbjct: 861 TGKARHAARSW 871
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224107129|ref|XP_002314384.1| predicted protein [Populus trichocarpa] gi|222863424|gb|EEF00555.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1321 bits (3418), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 617/764 (80%), Positives = 688/764 (90%)
Query: 132 MAVSKNFEPLEEILGEMSLAGIGPTNNTCIELVVSCVKSKMLREAFDIIQTMRKFKFRPA 191
M ++NF+ LE+ILGEMS+AG GPTN TC+ELV SCVKS+ L EAFD++Q MR FKFRPA
Sbjct: 1 MVRTRNFDYLEQILGEMSIAGFGPTNYTCVELVASCVKSRKLIEAFDLLQMMRHFKFRPA 60
Query: 192 FTAYTTLIGALATVRESNLMLNLFHQMQELGYEVSVHLFTTLIRVFAREGRVDDALFLLD 251
F+AYTTLIGAL+ V ES+ ML LF+QMQELGYEV+VHL TTLIRVF+REGRVD AL LLD
Sbjct: 61 FSAYTTLIGALSEVGESDRMLALFNQMQELGYEVNVHLLTTLIRVFSREGRVDAALSLLD 120
Query: 252 EMKNNAFSVDIVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGVAPDDVTYTSMIGVLCKSK 311
EMK+N F DIVLYNVCIDCFGKVGKVDMAWKFFHEMKA G+ PDDVTYTSM+GVLCK+
Sbjct: 121 EMKSNTFDADIVLYNVCIDCFGKVGKVDMAWKFFHEMKANGLVPDDVTYTSMMGVLCKAN 180
Query: 312 RLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLFERLKQKGCIPSVIAYN 371
RL+EAV +FEQM++NR+VPCAYAYNTMIMGYGS GKFDEA+SL ER + KGCIPSV+AYN
Sbjct: 181 RLDEAVEIFEQMEQNRQVPCAYAYNTMIMGYGSAGKFDEAYSLLERQRAKGCIPSVVAYN 240
Query: 372 SLLTCLGKKGRVTEAMKIFEAMKKDARPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEAG 431
+LTCLGKKG+ +A++IFE MK+DA PN TYN++I MLCKAGN E A K RDAMKEAG
Sbjct: 241 CILTCLGKKGKTDKALRIFEEMKRDAMPNLPTYNIIIGMLCKAGNVEAAFKVRDAMKEAG 300
Query: 432 LFPNVMTVNIMVDRLCKAQKLDEAFSIFEGMDHKTCTPDAVTFCSLIDGLGKNGRVDDAY 491
LFPNV T+NIM+DRLCKAQKLDEA SIFEGMD+K C+PD TFCSLIDGLGK GRVDDAY
Sbjct: 301 LFPNVRTINIMIDRLCKAQKLDEACSIFEGMDYKVCSPDGATFCSLIDGLGKQGRVDDAY 360
Query: 492 KFYEKMLDTDQIPNAILYTSLIRNFFKHGRKEDGHKIYKEMVQRGCSPDLMLLNTYMDCV 551
+ YE+MLD DQIPN ++YTSLIRNFFK RKEDGHK+YKEM++ GCSPDLMLLNTYMDCV
Sbjct: 361 RIYERMLDADQIPNVVVYTSLIRNFFKCDRKEDGHKMYKEMMRSGCSPDLMLLNTYMDCV 420
Query: 552 FKAGETEKGRALFEEIKAQGFVPDVQSYSILIHGLVKAGFAHETDQLFYAMKKQGCVLDT 611
FKAGETEKGRALFEEIKA+GF+PD +SYSILIH LVKAGFA ET +L+YAMK QGCVLDT
Sbjct: 421 FKAGETEKGRALFEEIKARGFLPDTRSYSILIHSLVKAGFARETYELYYAMKDQGCVLDT 480
Query: 612 RAYNTVVDGFCKSGKVNKAYQLLEEMKTKGHYPTVVTYGSVIDGLAKIDRLDEAYMLFEE 671
RAYNTV+DGFCKSGKVNKAYQLLEEMKT GH+PTVVTYGSV+DGLAKIDRLDEAYMLFEE
Sbjct: 481 RAYNTVIDGFCKSGKVNKAYQLLEEMKTMGHHPTVVTYGSVVDGLAKIDRLDEAYMLFEE 540
Query: 672 AKSKGIELNTVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNAYTWNCLLDALVKAEE 731
AKS GIELN VIYSSLIDGFGKVGR+DEAYL+MEE+MQKGLTPN YTWNCLLD LVKAEE
Sbjct: 541 AKSNGIELNQVIYSSLIDGFGKVGRVDEAYLVMEEMMQKGLTPNVYTWNCLLDGLVKAEE 600
Query: 732 ISEAFVCFQSMKDLKCTPNHVTYSIIINGLCRVRKFNKAFVFWQEMQKQGFKPNTITYTT 791
I+EA VCFQSMKDLKCTPN +TY I+INGLC+VRKFNKAFVFWQEMQKQG KPNTITYT
Sbjct: 601 INEALVCFQSMKDLKCTPNQITYCILINGLCKVRKFNKAFVFWQEMQKQGLKPNTITYTA 660
Query: 792 MISGLAKAGNITEANGLFERFKENGGVPDSACYNAMMEGLSNANRAMDAYTLFEETRRKG 851
MISGLAK+GN+ +A+ LFERF+ +GG+PDSA YNAM+EGLS ANRA+DAY LFEETR KG
Sbjct: 661 MISGLAKSGNVAQASSLFERFRASGGIPDSASYNAMIEGLSIANRALDAYQLFEETRLKG 720
Query: 852 FNIHTKTCVILLDALHKAECLEQAAIVGAVLRETAKSQHAARSW 895
+IHTKTCV LLDALHKAECLEQAAIVGAVLRETAKSQHAARSW
Sbjct: 721 CSIHTKTCVALLDALHKAECLEQAAIVGAVLRETAKSQHAARSW 764
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|115471383|ref|NP_001059290.1| Os07g0249100 [Oryza sativa Japonica Group] gi|33146978|dbj|BAC80051.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza sativa Japonica Group] gi|50508482|dbj|BAD30659.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza sativa Japonica Group] gi|113610826|dbj|BAF21204.1| Os07g0249100 [Oryza sativa Japonica Group] gi|215767773|dbj|BAH00002.1| unnamed protein product [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 1149 bits (2972), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 542/838 (64%), Positives = 665/838 (79%), Gaps = 7/838 (0%)
Query: 62 DVYNILHAGP-WGPAVENALSS-LDGMPQPGLVIGVLRRLKDVNLAINYFRWVERKTDQ- 118
++ +L A P W P + A+SS P +VI VLR +++ +LA +F +
Sbjct: 46 ELLRLLSAAPTWTPDLARAVSSTFSASPTADVVISVLRSIRNPSLAAPFFLLASSSSASA 105
Query: 119 AHSL--EAYNSLLMVMAVSKNFEPLEEILGEMSLAGIGPTNNTCIELVVSCVKSKMLREA 176
H L +AY+++L + + LE++L EM++ G G N C L + V+++ L +A
Sbjct: 106 PHPLPADAYHAVLPFL--HHDLAALEKVLEEMAVLGYGLPNQACAHLAAALVRARRLDDA 163
Query: 177 FDIIQTMRKFKFRPAFTAYTTLIGALATVRESNLMLNLFHQMQELGYEVSVHLFTTLIRV 236
+ MR+ KFRPAF+AYT LIGALA R L L QMQE+GYEV VHLFTTL+R
Sbjct: 164 VLAVAVMRRLKFRPAFSAYTVLIGALAEARRPERALELLRQMQEVGYEVGVHLFTTLVRA 223
Query: 237 FAREGRVDDALFLLDEMKNNAFSVDIVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGVAPD 296
AREG+V DAL L+DE+K + DIVLYNVCIDCFGK G VDMAWKFFHE+KAQG+ PD
Sbjct: 224 LAREGQVADALALVDEVKGSCLEPDIVLYNVCIDCFGKAGNVDMAWKFFHELKAQGLKPD 283
Query: 297 DVTYTSMIGVLCKSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLFE 356
DV+YTSMI VLCK+ RL EA +F QM+ R VPCAYAYNTMIMGYGS G+F++A+ L E
Sbjct: 284 DVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTMIMGYGSAGRFEDAYKLLE 343
Query: 357 RLKQKGCIPSVIAYNSLLTCLGKKGRVTEAMKIFEAMKKDARPNNTTYNVLIDMLCKAGN 416
RL+++GCIPSV+++NS+LTCLGKK +V EA+ +FE MKKDA PN++TYN++IDMLC G
Sbjct: 344 RLRERGCIPSVVSFNSILTCLGKKRKVDEALSLFEVMKKDAEPNSSTYNIIIDMLCLGGR 403
Query: 417 FEDALKFRDAMKEAGLFPNVMTVNIMVDRLCKAQKLDEAFSIFEGMDHKTCTPDAVTFCS 476
E+A + D M+ A LFPN++TVNIMVDRLCKA+KL+EA+ IFE + C PD VT+CS
Sbjct: 404 VEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEAYKIFESASQRGCNPDCVTYCS 463
Query: 477 LIDGLGKNGRVDDAYKFYEKMLDTDQIPNAILYTSLIRNFFKHGRKEDGHKIYKEMVQRG 536
LIDGLGK G+VD+AY+ +EKMLD N ++YTSLIRNFF HGRKEDGHKI+KE+++RG
Sbjct: 464 LIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHGRKEDGHKIFKELIRRG 523
Query: 537 CSPDLMLLNTYMDCVFKAGETEKGRALFEEIKAQGFVPDVQSYSILIHGLVKAGFAHETD 596
C PDL LLNTYMDCVFKAGE EKGR +FE+I++ GF+PDV+SYSILIHGL KAG A ET
Sbjct: 524 CKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETS 583
Query: 597 QLFYAMKKQGCVLDTRAYNTVVDGFCKSGKVNKAYQLLEEMKTKGHYPTVVTYGSVIDGL 656
+F+AMK+QG LD RAYN VVDGFCKSGKV+KAY++LEEMK K PTV TYG+++DGL
Sbjct: 584 NIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGL 643
Query: 657 AKIDRLDEAYMLFEEAKSKGIELNTVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNA 716
AKIDRLDEAYMLFEEAKSKGIELN V+YSSLIDGFGKVGRIDEAYLI+EE+M+KGLTPN
Sbjct: 644 AKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNV 703
Query: 717 YTWNCLLDALVKAEEISEAFVCFQSMKDLKCTPNHVTYSIIINGLCRVRKFNKAFVFWQE 776
YTWN LLDALVKAEEI+EA VCFQSMK++KC PN TYSI+INGLCRV+K+NKAFVFWQ+
Sbjct: 704 YTWNSLLDALVKAEEINEALVCFQSMKEMKCPPNTYTYSILINGLCRVQKYNKAFVFWQD 763
Query: 777 MQKQGFKPNTITYTTMISGLAKAGNITEANGLFERFKENGGVPDSACYNAMMEGLSNANR 836
MQKQG PN +TYTTMISGLAK GNIT+A LFERFK NGG+PD+A +NA++EG+SNANR
Sbjct: 764 MQKQGLVPNVVTYTTMISGLAKVGNITDAYSLFERFKANGGIPDAASFNALIEGMSNANR 823
Query: 837 AMDAYTLFEETRRKGFNIHTKTCVILLDALHKAECLEQAAIVGAVLRETAKSQHAARS 894
AM+AY +FEETR +G I+ K+C+ LLDAL+K+ECLEQAAIVGAVLRE AKSQHA+RS
Sbjct: 824 AMEAYQVFEETRLRGCRINIKSCISLLDALNKSECLEQAAIVGAVLREIAKSQHASRS 881
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 895 | ||||||
| TAIR|locus:2077637 | 871 | AT3G06920 "AT3G06920" [Arabido | 0.937 | 0.963 | 0.762 | 0.0 | |
| TAIR|locus:2116772 | 1112 | PGR3 "AT4G31850" [Arabidopsis | 0.821 | 0.660 | 0.300 | 2.2e-89 | |
| TAIR|locus:2168078 | 907 | AT5G59900 "AT5G59900" [Arabido | 0.768 | 0.758 | 0.296 | 3.1e-87 | |
| TAIR|locus:2174008 | 974 | AT5G61990 "AT5G61990" [Arabido | 0.751 | 0.690 | 0.265 | 3.2e-77 | |
| TAIR|locus:2026192 | 630 | RPF2 "rna processing factor 2" | 0.662 | 0.941 | 0.294 | 9e-77 | |
| TAIR|locus:2077061 | 619 | AT3G22470 "AT3G22470" [Arabido | 0.620 | 0.896 | 0.306 | 1.2e-74 | |
| TAIR|locus:2015494 | 629 | RPF3 "RNA processing factor 3" | 0.614 | 0.874 | 0.297 | 3.6e-73 | |
| TAIR|locus:2015208 | 630 | AT1G63130 [Arabidopsis thalian | 0.620 | 0.880 | 0.290 | 3.6e-73 | |
| TAIR|locus:2150024 | 729 | AT5G01110 [Arabidopsis thalian | 0.588 | 0.722 | 0.302 | 1.8e-72 | |
| TAIR|locus:2015228 | 614 | AT1G63080 [Arabidopsis thalian | 0.620 | 0.903 | 0.293 | 1.4e-71 |
| TAIR|locus:2077637 AT3G06920 "AT3G06920" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3434 (1213.9 bits), Expect = 0., P = 0.
Identities = 640/839 (76%), Positives = 731/839 (87%)
Query: 57 RTVVDDVYNILHAGPWGPAVENALSSLDGMPQPGLVIGVLRRLKDVNLAINYFRWVERKT 116
R V+D+ N+L GPWGP+ EN LS+L PQP VIGVLRRLKDVN AI YFRW ER+T
Sbjct: 33 RQTVNDICNVLETGPWGPSAENTLSALSFKPQPEFVIGVLRRLKDVNRAIEYFRWYERRT 92
Query: 117 DQAHSLEAYNSLLMVMAVSKNFEPLEEILGEMSLAGIGPTNNTCIELVVSCVKSKMLREA 176
+ H E+YNSLL+VMA +NF+ L++ILGEMS+AG GP+ NTCIE+V+ CVK+ LRE
Sbjct: 93 ELPHCPESYNSLLLVMARCRNFDALDQILGEMSVAGFGPSVNTCIEMVLGCVKANKLREG 152
Query: 177 FDIIQTMRKFKFRPAFTAYTTLIGALATVRESNLMLNLFHQMQELGYEVSVHLFTTLIRV 236
+D++Q MRKFKFRPAF+AYTTLIGA + V S++ML LF QMQELGYE +VHLFTTLIR
Sbjct: 153 YDVVQMMRKFKFRPAFSAYTTLIGAFSAVNHSDMMLTLFQQMQELGYEPTVHLFTTLIRG 212
Query: 237 FAREGRVDDALFLLDEMKNNAFSVDIVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGVAPD 296
FA+EGRVD AL LLDEMK+++ DIVLYNVCID FGKVGKVDMAWKFFHE++A G+ PD
Sbjct: 213 FAKEGRVDSALSLLDEMKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPD 272
Query: 297 DVTYTSMIGVLCKSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLFE 356
+VTYTSMIGVLCK+ RL+EAV MFE +++NR VPC YAYNTMIMGYGS GKFDEA+SL E
Sbjct: 273 EVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLE 332
Query: 357 RLKQKGCIPSVIAYNSLLTCLGKKGRVTEAMKIFEAMKKDARPNNTTYNVLIDMLCKAGN 416
R + KG IPSVIAYN +LTCL K G+V EA+K+FE MKKDA PN +TYN+LIDMLC+AG
Sbjct: 333 RQRAKGSIPSVIAYNCILTCLRKMGKVDEALKVFEEMKKDAAPNLSTYNILIDMLCRAGK 392
Query: 417 FEDALKFRDAMKEAGLFPNVMTVNIMVDRLCKAQKLDEAFSIFEGMDHKTCTPDAVTFCS 476
+ A + RD+M++AGLFPNV TVNIMVDRLCK+QKLDEA ++FE MD+K CTPD +TFCS
Sbjct: 393 LDTAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEACAMFEEMDYKVCTPDEITFCS 452
Query: 477 LIDGLGKNGRVDDAYKFYEKMLDTDQIPNAILYTSLIRNFFKHGRKEDGHKIYKEMVQRG 536
LIDGLGK GRVDDAYK YEKMLD+D N+I+YTSLI+NFF HGRKEDGHKIYK+M+ +
Sbjct: 453 LIDGLGKVGRVDDAYKVYEKMLDSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMINQN 512
Query: 537 CSPDLMLLNTYMDCVFKAGETEKGRALFEEIKAQGFVPDVQSYSILIHGLVKAGFAHETD 596
CSPDL LLNTYMDC+FKAGE EKGRA+FEEIKA+ FVPD +SYSILIHGL+KAGFA+ET
Sbjct: 513 CSPDLQLLNTYMDCMFKAGEPEKGRAMFEEIKARRFVPDARSYSILIHGLIKAGFANETY 572
Query: 597 QLFYAMKKQGCVLDTRAYNTVVDGFCKSGKVNKAYQLLEEMKTKGHYPTVVTYGSVIDGL 656
+LFY+MK+QGCVLDTRAYN V+DGFCK GKVNKAYQLLEEMKTKG PTVVTYGSVIDGL
Sbjct: 573 ELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGL 632
Query: 657 AKIDRLDEAYMLFEEAKSKGIELNTVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNA 716
AKIDRLDEAYMLFEEAKSK IELN VIYSSLIDGFGKVGRIDEAYLI+EELMQKGLTPN
Sbjct: 633 AKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNL 692
Query: 717 YTWNCLLDALVKAEEISEAFVCFQSMKDLKCTPNHVTYSIIINGLCRVRKFNKAFVFWQE 776
YTWN LLDALVKAEEI+EA VCFQSMK+LKCTPN VTY I+INGLC+VRKFNKAFVFWQE
Sbjct: 693 YTWNSLLDALVKAEEINEALVCFQSMKELKCTPNQVTYGILINGLCKVRKFNKAFVFWQE 752
Query: 777 MQKQGFKPNTITYTTMISGLAKAGNITEANGLFERFKENGGVPDSACYNAMMEGLSNANR 836
MQKQG KP+TI+YTTMISGLAKAGNI EA LF+RFK NGGVPDSACYNAM+EGLSN NR
Sbjct: 753 MQKQGMKPSTISYTTMISGLAKAGNIAEAGALFDRFKANGGVPDSACYNAMIEGLSNGNR 812
Query: 837 AMDAYTLFEETRRKGFNIHTKTCVILLDALHKAECLEQAAIVGAVLRETAKSQHAARSW 895
AMDA++LFEETRR+G IH KTCV+LLD LHK +CLEQAAIVGAVLRET K++HAARSW
Sbjct: 813 AMDAFSLFEETRRRGLPIHNKTCVVLLDTLHKNDCLEQAAIVGAVLRETGKARHAARSW 871
|
|
| TAIR|locus:2116772 PGR3 "AT4G31850" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 892 (319.1 bits), Expect = 2.2e-89, P = 2.2e-89
Identities = 224/746 (30%), Positives = 362/746 (48%)
Query: 125 YNSLLMVMAVSKNFEPLEEILGEMSLAGIGPTNNTCIELVVSCVKSKMLREAFDIIQTMR 184
Y +LL + +++ + +++ EM G P T LV + K+ EAFD + MR
Sbjct: 331 YITLLDRFSDNRDLDSVKQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFDTLDVMR 390
Query: 185 KFKFRPAFTAYTTLIGALATVRESNLMLNLFHQMQELGYEVSVHLFTTLIRVFAREGRVD 244
P Y TLI L V + L LF M+ LG + + + + I + + G
Sbjct: 391 DQGILPNLHTYNTLICGLLRVHRLDDALELFGNMESLGVKPTAYTYIVFIDYYGKSGDSV 450
Query: 245 DALFLLDEMKNNAFSVDIVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGVAPDDVTYTSMI 304
AL ++MK + +IV N + K G+ A + F+ +K G+ PD VTY M+
Sbjct: 451 SALETFEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMM 510
Query: 305 GVLCKSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLFERLKQKGCI 364
K ++EA+ + +M N P N++I + DEA+ +F R+K+
Sbjct: 511 KCYSKVGEIDEAIKLLSEMMENGCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLK 570
Query: 365 PSVIAYNSLLTCLGKKGRVTEAMKIFEAM-KKDARPNNTTYNVLIDMLCKAGNFEDALKF 423
P+V+ YN+LL LGK G++ EA+++FE M +K PN T+N L D LCK ALK
Sbjct: 571 PTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTLFDCLCKNDEVTLALKM 630
Query: 424 RDAMKEAGLFPNVMTVNIMVDRLCKAQKLDEAFSIFEGMDHKTCTPDAVTFCSLIDGLGK 483
M + G P+V T N ++ L K ++ EA F M K PD VT C+L+ G+ K
Sbjct: 631 LFKMMDMGCVPDVFTYNTIIFGLVKNGQVKEAMCFFHQMK-KLVYPDFVTLCTLLPGVVK 689
Query: 484 NGRVDDAYKFYEKMLDT--DQIPNAILYTSLIRNFFKHGRKEDGHKIYKEMVQRG-CSPD 540
++DAYK L DQ P + + LI + ++ + +V G C
Sbjct: 690 ASLIEDAYKIITNFLYNCADQ-PANLFWEDLIGSILAEAGIDNAVSFSERLVANGICRDG 748
Query: 541 LMLLNTYMDCVFKAGETEKGRALFEEI-KAQGFVPDVQSYSILIHGLVKAGFAHETDQLF 599
+L + K R LFE+ K G P + +Y++LI GL++A +F
Sbjct: 749 DSILVPIIRYSCKHNNVSGARTLFEKFTKDLGVQPKLPTYNLLIGGLLEADMIEIAQDVF 808
Query: 600 YAMKKQGCVLDTRAYNTVVDGFCKSGKVNKAYQLLEEMKTKGHYPTVVTYGSVIDGLAKI 659
+K GC+ D YN ++D + KSGK+++ ++L +EM T +T+ VI GL K
Sbjct: 809 LQVKSTGCIPDVATYNFLLDAYGKSGKIDELFELYKEMSTHECEANTITHNIVISGLVKA 868
Query: 660 DRLDEAYMLFEEAKS-KGIELNTVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNAYT 718
+D+A L+ + S + Y LIDG K GR+ EA + E ++ G PN
Sbjct: 869 GNVDDALDLYYDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAI 928
Query: 719 WNCLLDALVKAEEISEAFVCFQSMKDLKCTPNHVTYSIIINGLCRVRKFNKAFVFWQEMQ 778
+N L++ KA E A F+ M P+ TYS++++ LC V + ++ +++E++
Sbjct: 929 YNILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFKELK 988
Query: 779 KQGFKPNTITYTTMISGLAKAGNITEANGLFERFKENGGV-PDSACYNAMMEGLSNANRA 837
+ G P+ + Y +I+GL K+ + EA LF K + G+ PD YN+++ L A
Sbjct: 989 ESGLNPDVVCYNLIINGLGKSHRLEEALVLFNEMKTSRGITPDLYTYNSLILNLGIAGMV 1048
Query: 838 MDAYTLFEETRRKGF--NIHTKTCVI 861
+A ++ E +R G N+ T +I
Sbjct: 1049 EEAGKIYNEIQRAGLEPNVFTFNALI 1074
|
|
| TAIR|locus:2168078 AT5G59900 "AT5G59900" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 822 (294.4 bits), Expect = 3.1e-87, Sum P(2) = 3.1e-87
Identities = 205/692 (29%), Positives = 331/692 (47%)
Query: 163 LVVSCVKSKMLREAFDIIQTM-RKFKFRPAFTAYTTLIGALATVRESNLMLNLFHQMQEL 221
L+ V+S+ + + + + M K P + L+ L R L + LF+ M +
Sbjct: 162 LIQHYVRSRRVLDGVLVFKMMITKVSLLPEVRTLSALLHGLVKFRHFGLAMELFNDMVSV 221
Query: 222 GYEVSVHLFTTLIRVFAREGRVDDALFLLDEMKNNAFSVDIVLYNVCIDCFGKVGKVDMA 281
G V+++T +IR + A ++ M+ V+IV YNV ID K KV A
Sbjct: 222 GIRPDVYIYTGVIRSLCELKDLSRAKEMIAHMEATGCDVNIVPYNVLIDGLCKKQKVWEA 281
Query: 282 WKFFHEMKAQGVAPDDVTYTSMIGVLCKSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMG 341
++ + + PD VTY +++ LCK + E + M ++M R P A ++++ G
Sbjct: 282 VGIKKDLAGKDLKPDVVTYCTLVYGLCKVQEFEIGLEMMDEMLCLRFSPSEAAVSSLVEG 341
Query: 342 YGSVGKFDEAFSLFERLKQKGCIPSVIAYNSLLTCLGKKGRVTEAMKIFEAMKK-DARPN 400
GK +EA +L +R+ G P++ YN+L+ L K + EA +F+ M K RPN
Sbjct: 342 LRKRGKIEEALNLVKRVVDFGVSPNLFVYNALIDSLCKGRKFHEAELLFDRMGKIGLRPN 401
Query: 401 NTTYNVLIDMLCKAGNFEDALKFRDAMKEAGLFPNVMTVNIMVDRLCKAQKLDEAFSIFE 460
+ TY++LIDM C+ G + AL F M + GL +V N +++ CK + A
Sbjct: 402 DVTYSILIDMFCRRGKLDTALSFLGEMVDTGLKLSVYPYNSLINGHCKFGDISAAEGFMA 461
Query: 461 GMDHKTCTPDAVTFCSLIDGLGKNGRVDDAYKFYEKMLDTDQIPNAILYTSLIRNFFKHG 520
M +K P VT+ SL+ G G+++ A + Y +M P+ +T+L+ F+ G
Sbjct: 462 EMINKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGKGIAPSIYTFTTLLSGLFRAG 521
Query: 521 RKEDGHKIYKEMVQRGCSPDLMLLNTYMDCVFKAGETEKGRALFEEIKAQGFVPDVQSYS 580
D K++ EM + P+ + N ++ + G+ K +E+ +G VPD SY
Sbjct: 522 LIRDAVKLFNEMAEWNVKPNRVTYNVMIEGYCEEGDMSKAFEFLKEMTEKGIVPDTYSYR 581
Query: 581 ILIHGLVKAGFAHETDQLFYAMKKQGCVLDTRAYNTVVDGFCKSGKVNKAYQLLEEMKTK 640
LIHGL G A E + K C L+ Y ++ GFC+ GK+ +A + +EM +
Sbjct: 582 PLIHGLCLTGQASEAKVFVDGLHKGNCELNEICYTGLLHGFCREGKLEEALSVCQEMVQR 641
Query: 641 GHYPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNTVIYSSLIDGFGKVGRIDEA 700
G +V YG +IDG K + L +E +G++ + VIY+S+ID K G EA
Sbjct: 642 GVDLDLVCYGVLIDGSLKHKDRKLFFGLLKEMHDRGLKPDDVIYTSMIDAKSKTGDFKEA 701
Query: 701 YLIMEELMQKGLTPNAYTWNCLLDALVKAEEISEAFVCFQSMKDLKCTPNHVTYSIIING 760
+ I + ++ +G PN T+ +++ L KA ++EA V M+ + PN VTY ++
Sbjct: 702 FGIWDLMINEGCVPNEVTYTAVINGLCKAGFVNEAEVLCSKMQPVSSVPNQVTYGCFLDI 761
Query: 761 LCRVR-KFNKAFVFWQEMQKQGFKPNTITYTTMISGLAKAGNITEANGLFERFKENGGVP 819
L + KA + K G NT TY +I G + G I EA+ L R +G P
Sbjct: 762 LTKGEVDMQKAVELHNAILK-GLLANTATYNMLIRGFCRQGRIEEASELITRMIGDGVSP 820
Query: 820 DSACYNAMMEGLSNANRAMDAYTLFEETRRKG 851
D Y M+ L N A L+ KG
Sbjct: 821 DCITYTTMINELCRRNDVKKAIELWNSMTEKG 852
|
|
| TAIR|locus:2174008 AT5G61990 "AT5G61990" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 728 (261.3 bits), Expect = 3.2e-77, Sum P(2) = 3.2e-77
Identities = 182/686 (26%), Positives = 324/686 (47%)
Query: 190 PAFTAYTTLIGALATVRESNLMLNLFHQMQELGYEVSVHLFTTLIRVFAREGRVDDALFL 249
P Y LI L ++ +L +M LG + H ++ LI + D A L
Sbjct: 275 PLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRNADAAKGL 334
Query: 250 LDEMKNNAFSVDIVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGVAPDDVTYTSMIGVLCK 309
+ EM ++ ++ +Y+ CI K G ++ A F M A G+ P Y S+I C+
Sbjct: 335 VHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEGYCR 394
Query: 310 SKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLFERLKQKGCIPSVIA 369
K + + + +M + V Y Y T++ G S G D A+++ + + GC P+V+
Sbjct: 395 EKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVI 454
Query: 370 YNSLLTCLGKKGRVTEAMKIFEAMKKDA-RPNNTTYNVLIDMLCKAGNFEDALKFRDAMK 428
Y +L+ + R +AM++ + MK+ P+ YN LI L KA ++A F M
Sbjct: 455 YTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMV 514
Query: 429 EAGLFPNVMTVNIMVDRLCKAQKLDEAFSIFEGMDHKTCTPDAVTFCSLIDGLGKNGRVD 488
E GL PN T + +A + A + M P+ V LI+ K G+V
Sbjct: 515 ENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKGKVI 574
Query: 489 DAYKFYEKMLDTDQIPNAILYTSLIRNFFKHGRKEDGHKIYKEMVQRGCSPDLMLLNTYM 548
+A Y M+D + +A YT L+ FK+ + +D +I++EM +G +PD+ +
Sbjct: 575 EACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLI 634
Query: 549 DCVFKAGETEKGRALFEEIKAQGFVPDVQSYSILIHGLVKAGFAHETDQLFYAMKKQGCV 608
+ K G +K ++F+E+ +G P+V Y++L+ G ++G + +L M +G
Sbjct: 635 NGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLH 694
Query: 609 LDTRAYNTVVDGFCKSGKVNKAYQLLEEMKTKGHYPTVVTYGSVIDGLAKIDRLDEAYML 668
+ Y T++DG+CKSG + +A++L +EMK KG P Y +++DG +++ ++ A +
Sbjct: 695 PNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITI 754
Query: 669 FEEAKSKGIELNTVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLT----PNAYTWNCLLD 724
F K KG +T +++LI+ K G+ + ++ LM PN T+N ++D
Sbjct: 755 FGTNK-KGCASSTAPFNALINWVFKFGKTELKTEVLNRLMDGSFDRFGKPNDVTYNIMID 813
Query: 725 ALVKAEEISEAFVCFQSMKDLKCTPNHVTYSIIINGLCRVRKFNKAFVFWQEMQKQGFKP 784
L K + A F M++ P +TY+ ++NG ++ + + F + E G +P
Sbjct: 814 YLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFPVFDEAIAAGIEP 873
Query: 785 NTITYTTMISGLAKAGNITEANGLFERFKENGGVPD------SACYNAMMEGLSNANRAM 838
+ I Y+ +I+ K G T+A L ++ V D S C A++ G +
Sbjct: 874 DHIMYSVIINAFLKEGMTTKALVLVDQMFAKNAVDDGCKLSISTC-RALLSGFAKVGEME 932
Query: 839 DAYTLFEETRRKGFNIHTKTCVILLD 864
A + E R + + T + L++
Sbjct: 933 VAEKVMENMVRLQYIPDSATVIELIN 958
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| TAIR|locus:2026192 RPF2 "rna processing factor 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 773 (277.2 bits), Expect = 9.0e-77, P = 9.0e-77
Identities = 176/597 (29%), Positives = 302/597 (50%)
Query: 273 GKVGKVDMAWKFFHEMKAQGVAPDDVTYTSMIGVLCKSKRLEEAVAMFEQMDRNREVPCA 332
G V ++ FF G D L + K L++AVA+F +M ++R P
Sbjct: 23 GNAATVSPSFSFFWRRAFSGKTSYDYREKLSRNGLSELK-LDDAVALFGEMVKSRPFPSI 81
Query: 333 YAYNTMIMGYGSVGKFDEAFSLFERLKQKGCIPSVIAYNSLLTCLGKKGRVTEAMKIF-E 391
++ ++ + KFD SL E+++ G + Y+ L+ C ++ ++ A+ + +
Sbjct: 82 IEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILINCFCRRSQLPLALAVLGK 141
Query: 392 AMKKDARPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEAGLFPNVMTVNIMVDRLCKAQK 451
MK PN T + L++ C + +A+ D M G PN +T N ++ L K
Sbjct: 142 MMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNK 201
Query: 452 LDEAFSIFEGMDHKTCTPDAVTFCSLIDGLGKNGRVDDAYKFYEKMLDTDQIPNAILYTS 511
EA ++ + M K C PD VT+ +++GL K G D A+ KM P ++Y +
Sbjct: 202 ASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNT 261
Query: 512 LIRNFFKHGRKEDGHKIYKEMVQRGCSPDLMLLNTYMDCVFKAGETEKGRALFEEIKAQG 571
+I K+ +D ++KEM +G P+++ ++ + C+ G L ++ +
Sbjct: 262 IIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERK 321
Query: 572 FVPDVQSYSILIHGLVKAGFAHETDQLFYAMKKQGCVLDTRAYNTVVDGFCKSGKVNKAY 631
PDV ++S LI VK G E ++L+ M K+ Y+++++GFC ++++A
Sbjct: 322 INPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAK 381
Query: 632 QLLEEMKTKGHYPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNTVIYSSLIDGF 691
Q+ E M +K +P VVTY ++I G K R++E +F E +G+ NTV Y+ LI G
Sbjct: 382 QMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGL 441
Query: 692 GKVGRIDEAYLIMEELMQKGLTPNAYTWNCLLDALVKAEEISEAFVCFQSMKDLKCTPNH 751
+ G D A I +E++ G+ PN T+N LLD L K ++ +A V F+ ++ K P
Sbjct: 442 FQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTI 501
Query: 752 VTYSIIINGLCRVRKFNKAFVFWQEMQKQGFKPNTITYTTMISGLAKAGNITEANGLFER 811
TY+I+I G+C+ K + + + +G KP+ + Y TMISG + G+ EA+ LF+
Sbjct: 502 YTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKE 561
Query: 812 FKENGGVPDSACYNAMMEG-LSNANRAMDAYTLFEETRRKGFNIHTKTCVILLDALH 867
KE+G +P+S CYN ++ L + +R A L +E R GF T ++ + LH
Sbjct: 562 MKEDGTLPNSGCYNTLIRARLRDGDREASA-ELIKEMRSCGFAGDASTIGLVTNMLH 617
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| TAIR|locus:2077061 AT3G22470 "AT3G22470" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 753 (270.1 bits), Expect = 1.2e-74, P = 1.2e-74
Identities = 171/558 (30%), Positives = 302/558 (54%)
Query: 242 RVDDALFLLDEM-KNNAFSVDIVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGVAPDDVTY 300
+V+DA+ L + M ++ I +C + + D+ F M+ G+ D T
Sbjct: 50 KVNDAIDLFESMIQSRPLPTPIDFNRLC-SAVARTKQYDLVLGFCKGMELNGIEHDMYTM 108
Query: 301 TSMIGVLCKSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLFERLKQ 360
T MI C+ K+L A ++ + + P ++T++ G+ G+ EA +L +R+ +
Sbjct: 109 TIMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVE 168
Query: 361 KGCIPSVIAYNSLLTCLGKKGRVTEAMKIFEAMKKDA-RPNNTTYNVLIDMLCKAGNFED 419
P ++ ++L+ L KGRV+EA+ + + M + +P+ TY +++ LCK+GN
Sbjct: 169 MKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSAL 228
Query: 420 ALKFRDAMKEAGLFPNVMTVNIMVDRLCKAQKLDEAFSIFEGMDHKTCTPDAVTFCSLID 479
AL M+E + +V+ +I++D LCK D+A S+F M+ K D VT+ SLI
Sbjct: 229 ALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIG 288
Query: 480 GLGKNGRVDDAYKFYEKMLDTDQIPNAILYTSLIRNFFKHGRKEDGHKIYKEMVQRGCSP 539
GL +G+ DD K +M+ + IP+ + +++LI F K G+ + ++Y EM+ RG +P
Sbjct: 289 GLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAP 348
Query: 540 DLMLLNTYMDCVFKAGETEKGRALFEEIKAQGFVPDVQSYSILIHGLVKAGFAHETDQLF 599
D + N+ +D K + +F+ + ++G PD+ +YSILI+ KA + +LF
Sbjct: 349 DTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLF 408
Query: 600 YAMKKQGCVLDTRAYNTVVDGFCKSGKVNKAYQLLEEMKTKGHYPTVVTYGSVIDGLAKI 659
+ +G + +T YNT+V GFC+SGK+N A +L +EM ++G P+VVTYG ++DGL
Sbjct: 409 REISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDN 468
Query: 660 DRLDEAYMLFEEAKSKGIELNTVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNAYTW 719
L++A +FE+ + + L IY+ +I G ++D+A+ + L KG+ P+ T+
Sbjct: 469 GELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTY 528
Query: 720 NCLLDALVKAEEISEAFVCFQSMKDLKCTPNHVTYSIIINGLCRVRKFNKAFVFWQEMQK 779
N ++ L K +SEA + F+ MK+ CTP+ TY+I+I + +EM+
Sbjct: 529 NVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSGLISSVELIEEMKV 588
Query: 780 QGFKPNTITYTTMISGLA 797
GF ++ T +I L+
Sbjct: 589 CGFSADSSTIKMVIDMLS 606
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| TAIR|locus:2015494 RPF3 "RNA processing factor 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 739 (265.2 bits), Expect = 3.6e-73, P = 3.6e-73
Identities = 164/551 (29%), Positives = 285/551 (51%)
Query: 212 LNLFHQMQELGYEVSVHLFTTLIRVFAREGRVDDALFLLDEMKNNAFSVDIVLYNVCIDC 271
++LF +M + S+ F L+ A+ + D + L + M+N S D+ YN+ I+C
Sbjct: 65 VDLFGEMVQSRPLPSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYNILINC 124
Query: 272 FGKVGKVDMAWKFFHEMKAQGVAPDDVTYTSMIGVLCKSKRLEEAVAMFEQMDRNREVPC 331
F + ++ +A +M G PD VT +S++ C KR+ EAVA+ +QM P
Sbjct: 125 FCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPN 184
Query: 332 AYAYNTMIMGYGSVGKFDEAFSLFERLKQKGCIPSVIAYNSLLTCLGKKGRVTEAMKIFE 391
+NT+I G K EA +L +R+ +GC P + Y +++ L K+G + A+ + +
Sbjct: 185 TVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLK 244
Query: 392 AMKKDA-RPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEAGLFPNVMTVNIMVDRLCKAQ 450
M+K + Y +ID LC N DAL M G+ PNV+T N ++ LC
Sbjct: 245 KMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYG 304
Query: 451 KLDEAFSIFEGMDHKTCTPDAVTFCSLIDGLGKNGRVDDAYKFYEKMLDTDQIPNAILYT 510
+ +A + M + P+ VTF +LID K G++ +A K Y++M+ P+ Y+
Sbjct: 305 RWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYS 364
Query: 511 SLIRNFFKHGRKEDGHKIYKEMVQRGCSPDLMLLNTYMDCVFKAGETEKGRALFEEIKAQ 570
SLI F H R ++ +++ M+ + C P+++ NT + KA E+G LF E+ +
Sbjct: 365 SLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQR 424
Query: 571 GFVPDVQSYSILIHGLVKAGFAHETDQLFYAMKKQGCVLDTRAYNTVVDGFCKSGKVNKA 630
G V + +Y+ LI GL +AG ++F M G D Y+ ++DG CK GK+ KA
Sbjct: 425 GLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKA 484
Query: 631 YQLLEEMKTKGHYPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNTVIYSSLIDG 690
+ E ++ P + TY +I+G+ K ++++ + LF KG++ N +IY+++I G
Sbjct: 485 LVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISG 544
Query: 691 FGKVGRIDEAYLIMEELMQKGLTPNAYTWNCLLDALVKAEEISEAFVCFQSMKDLKCTPN 750
F + G +EA + E+ + G PN+ T+N L+ A ++ + + + + M+ +
Sbjct: 545 FCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRARLRDGDKAASAELIKEMRSCGFVGD 604
Query: 751 HVTYSIIINGL 761
T S++IN L
Sbjct: 605 ASTISMVINML 615
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| TAIR|locus:2015208 AT1G63130 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 739 (265.2 bits), Expect = 3.6e-73, P = 3.6e-73
Identities = 162/558 (29%), Positives = 287/558 (51%)
Query: 312 RLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLFERLKQKGCIPSVIAYN 371
+L++AV +F M ++R P ++ ++ + KFD SL E+++ G ++ Y+
Sbjct: 61 KLDDAVNLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYS 120
Query: 372 SLLTCLGKKGRVTEAMKIF-EAMKKDARPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEA 430
L+ C ++ +++ A+ + + MK P+ T N L++ C DA+ M E
Sbjct: 121 ILINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEM 180
Query: 431 GLFPNVMTVNIMVDRLCKAQKLDEAFSIFEGMDHKTCTPDAVTFCSLIDGLGKNGRVDDA 490
G P+ T N ++ L + + EA ++ + M K C PD VT+ +++GL K G +D A
Sbjct: 181 GYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLA 240
Query: 491 YKFYEKMLDTDQIPNAILYTSLIRNFFKHGRKEDGHKIYKEMVQRGCSPDLMLLNTYMDC 550
+KM P ++Y ++I + D ++ EM +G P+++ N+ + C
Sbjct: 241 LSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRC 300
Query: 551 VFKAGETEKGRALFEEIKAQGFVPDVQSYSILIHGLVKAGFAHETDQLFYAMKKQGCVLD 610
+ G L ++ + P+V ++S LI VK G E ++L+ M K+ D
Sbjct: 301 LCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPD 360
Query: 611 TRAYNTVVDGFCKSGKVNKAYQLLEEMKTKGHYPTVVTYGSVIDGLAKIDRLDEAYMLFE 670
Y+++++GFC ++++A + E M +K +P VVTY ++I G K R+DE LF
Sbjct: 361 IFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFR 420
Query: 671 EAKSKGIELNTVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNAYTWNCLLDALVKAE 730
E +G+ NTV Y++LI GF + D A ++ ++++ G+ P+ T++ LLD L
Sbjct: 421 EMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNG 480
Query: 731 EISEAFVCFQSMKDLKCTPNHVTYSIIINGLCRVRKFNKAFVFWQEMQKQGFKPNTITYT 790
++ A V F+ ++ K P+ TY+I+I G+C+ K + + + +G KPN +TYT
Sbjct: 481 KVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVTYT 540
Query: 791 TMISGLAKAGNITEANGLFERFKENGGVPDSACYNAMMEG-LSNANRAMDAYTLFEETRR 849
TM+SG + G EA+ LF KE G +PDS YN ++ L + ++A A L E R
Sbjct: 541 TMMSGFCRKGLKEEADALFREMKEEGPLPDSGTYNTLIRAHLRDGDKAASA-ELIREMRS 599
Query: 850 KGFNIHTKTCVILLDALH 867
F T ++ + LH
Sbjct: 600 CRFVGDASTIGLVTNMLH 617
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| TAIR|locus:2150024 AT5G01110 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 711 (255.3 bits), Expect = 1.8e-72, Sum P(2) = 1.8e-72
Identities = 161/532 (30%), Positives = 274/532 (51%)
Query: 335 YNTMIMGYGSVGKFDEAFSLFERLKQKGCIPSVIAYNSLLTCLGKKGRVTEAMKIFEAMK 394
++ +I Y K EA F L+ KG S+ A N+L+ L + G V A +++ +
Sbjct: 168 FDLLIRTYVQARKLREAHEAFTLLRSKGFTVSIDACNALIGSLVRIGWVELAWGVYQEIS 227
Query: 395 KDARPNNT-TYNVLIDMLCKAGNFEDALKFRDAMKEAGLFPNVMTVNIMVDRLCKAQKLD 453
+ N T N++++ LCK G E F ++E G++P+++T N ++ ++
Sbjct: 228 RSGVGINVYTLNIMVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYSSKGLME 287
Query: 454 EAFSIFEGMDHKTCTPDAVTFCSLIDGLGKNGRVDDAYKFYEKMLDTDQIPNAILYTSLI 513
EAF + M K +P T+ ++I+GL K+G+ + A + + +ML + P++ Y SL+
Sbjct: 288 EAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLL 347
Query: 514 RNFFKHGRKEDGHKIYKEMVQRGCSPDLMLLNTYMDCVFKAGETEKGRALFEEIKAQGFV 573
K G + K++ +M R PDL+ ++ M ++G +K F +K G +
Sbjct: 348 MEACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLI 407
Query: 574 PDVQSYSILIHGLVKAGFAHETDQLFYAMKKQGCVLDTRAYNTVVDGFCKSGKVNKAYQL 633
PD Y+ILI G + G L M +QGC +D YNT++ G CK + +A +L
Sbjct: 408 PDNVIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKL 467
Query: 634 LEEMKTKGHYPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNTVIYSSLIDGFGK 693
EM + +P T +IDG K+ L A LF++ K K I L+ V Y++L+DGFGK
Sbjct: 468 FNEMTERALFPDSYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGFGK 527
Query: 694 VGRIDEAYLIMEELMQKGLTPNAYTWNCLLDALVKAEEISEAFVCFQSMKDLKCTPNHVT 753
VG ID A I +++ K + P +++ L++AL ++EAF + M P +
Sbjct: 528 VGDIDTAKEIWADMVSKEILPTPISYSILVNALCSKGHLAEAFRVWDEMISKNIKPTVMI 587
Query: 754 YSIIINGLCRVRKFNKAFVFWQEMQKQGFKPNTITYTTMISGLAKAGNITEANGLFERFK 813
+ +I G CR + F ++M +GF P+ I+Y T+I G + N+++A GL ++ +
Sbjct: 588 CNSMIKGYCRSGNASDGESFLEKMISEGFVPDCISYNTLIYGFVREENMSKAFGLVKKME 647
Query: 814 EN-GG-VPDSACYNAMMEGLSNANRAMDAYTLFEETRRKGFNIH--TKTCVI 861
E GG VPD YN+++ G N+ +A + + +G N T TC+I
Sbjct: 648 EEQGGLVPDVFTYNSILHGFCRQNQMKEAEVVLRKMIERGVNPDRSTYTCMI 699
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| TAIR|locus:2015228 AT1G63080 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 724 (259.9 bits), Expect = 1.4e-71, P = 1.4e-71
Identities = 164/558 (29%), Positives = 290/558 (51%)
Query: 312 RLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLFERLKQKGCIPSVIAYN 371
+L+EAV +F +M ++R P ++ ++ + KFD S E+++ G ++ YN
Sbjct: 45 KLDEAVDLFGEMVKSRPFPSIVEFSKLLSAIAKMKKFDLVISFGEKMEILGVSHNLYTYN 104
Query: 372 SLLTCLGKKGRVTEAMKIF-EAMKKDARPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEA 430
++ CL ++ +++ A+ I + MK P+ T N L++ C +A+ D M E
Sbjct: 105 IMINCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEM 164
Query: 431 GLFPNVMTVNIMVDRLCKAQKLDEAFSIFEGMDHKTCTPDAVTFCSLIDGLGKNGRVDDA 490
G P+ +T +V L + K EA ++ E M K C PD VT+ ++I+GL K G D A
Sbjct: 165 GYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLA 224
Query: 491 YKFYEKMLDTDQIPNAILYTSLIRNFFKHGRKEDGHKIYKEMVQRGCSPDLMLLNTYMDC 550
KM + ++Y+++I + K+ +D ++ EM +G PD+ ++ + C
Sbjct: 225 LNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISC 284
Query: 551 VFKAGETEKGRALFEEIKAQGFVPDVQSYSILIHGLVKAGFAHETDQLFYAMKKQGCVLD 610
+ G L ++ + P+V +++ LI K G E ++LF M ++ +
Sbjct: 285 LCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPN 344
Query: 611 TRAYNTVVDGFCKSGKVNKAYQLLEEMKTKGHYPTVVTYGSVIDGLAKIDRLDEAYMLFE 670
YN++++GFC ++++A Q+ M +K P VVTY ++I+G K ++ + LF
Sbjct: 345 IVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELFR 404
Query: 671 EAKSKGIELNTVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNAYTWNCLLDALVKAE 730
+ +G+ NTV Y++LI GF + D A ++ ++++ G+ PN T+N LLD L K
Sbjct: 405 DMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNG 464
Query: 731 EISEAFVCFQSMKDLKCTPNHVTYSIIINGLCRVRKFNKAFVFWQEMQKQGFKPNTITYT 790
++ +A V F+ ++ K P+ TY+I+ G+C+ K + + + +G KP+ I Y
Sbjct: 465 KLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLKGVKPDVIAYN 524
Query: 791 TMISGLAKAGNITEANGLFERFKENGGVPDSACYNAMMEG-LSNANRAMDAYTLFEETRR 849
TMISG K G EA LF + KE+G +PDS YN ++ L + ++A A L +E R
Sbjct: 525 TMISGFCKKGLKEEAYTLFIKMKEDGPLPDSGTYNTLIRAHLRDGDKAASA-ELIKEMRS 583
Query: 850 KGFNIHTKTCVILLDALH 867
F T ++ D LH
Sbjct: 584 CRFAGDASTYGLVTDMLH 601
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9M907 | PP217_ARATH | No assigned EC number | 0.7544 | 0.9430 | 0.9690 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | fgenesh2_kg.3__712__AT3G06920.1 | annotation not avaliable (871 aa) | |||||||||
(Arabidopsis lyrata) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 895 | |||
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 6e-37 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 6e-36 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 6e-28 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 6e-28 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 5e-26 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 7e-25 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-23 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-23 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 3e-21 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-17 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-17 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-16 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-15 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-15 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-14 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 8e-14 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-12 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-12 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 7e-12 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 8e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-10 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 8e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 8e-10 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-09 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 7e-09 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 1e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-08 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 5e-08 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 7e-08 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 1e-07 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 3e-07 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 6e-07 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 7e-07 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 9e-07 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 1e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 3e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 3e-06 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 3e-06 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 4e-06 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 7e-06 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-05 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 1e-05 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-05 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 3e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 3e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 4e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 5e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 5e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 5e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 6e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 8e-05 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 8e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 1e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 1e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 1e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 1e-04 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-04 | |
| PRK15174 | 656 | PRK15174, PRK15174, Vi polysaccharide export prote | 2e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 3e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 4e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 6e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 9e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.001 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.001 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.001 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 0.002 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.002 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.003 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.004 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 150 bits (379), Expect = 6e-37
Identities = 115/537 (21%), Positives = 217/537 (40%), Gaps = 54/537 (10%)
Query: 103 NLAINYFRWVERKTDQAHSLEAYNSLLMVMAVSKNFEPLEEI--LGEMSLAGI------- 153
N Y V K ++AYN LL + + LE++ G + + I
Sbjct: 355 NSLAAYNGGVSGKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFK 414
Query: 154 -------------------GPTNNTCIELVVSCVKSKMLREAFDIIQTMRKFKFRPAFTA 194
PT +T L+ C S+ + A +++ +++ +
Sbjct: 415 ACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKL 474
Query: 195 YTTLIGALATVRESNLMLNLFHQMQELGYEVSVHLFTTLIRVFAREGRVDDALFLLDEMK 254
YTTLI A + + M +FH+M G E +VH F LI AR G+V A M+
Sbjct: 475 YTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMR 534
Query: 255 NNAFSVDIVLYNVCIDCFGKVGKVDMAWKFFHEMKAQG--VAPDDVTYTSMIGVLCKSKR 312
+ D V++N I G+ G VD A+ EMKA+ + PD +T +++ + +
Sbjct: 535 SKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQ 594
Query: 313 LEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLFERLKQKGCIPSVIAYNS 372
++ A +++ + Y + G +D A S+++ +K+KG P + +++
Sbjct: 595 VDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSA 654
Query: 373 LLTCLGKKGRVTEAMKIFEAMKKDA-RPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEAG 431
L+ G G + +A +I + +K + +Y+ L+ A N++ AL+ + +K
Sbjct: 655 LVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIK 714
Query: 432 LFPNVMTVNIMVDRLCKAQKLDEAFSIFEGMDHKTCTPDAVTFCSLIDGLGKNGRVDDAY 491
L P V T+N ++ LC+ +L +A + M P+ +T+ L+ + D
Sbjct: 715 LRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGL 774
Query: 492 KFYEKMLDTDQIPNAILYTSLI----RNF------------FKHGRKEDGHK-------I 528
+ + PN ++ + R F F GR + +K +
Sbjct: 775 DLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMV 834
Query: 529 YKEMVQRGCSPDLMLLNTYMDCVFKAGETEKGRALFEEIKAQGFVPDVQSYSILIHG 585
Y+E + G P + +L+ + C+ + L E + + S L+ G
Sbjct: 835 YRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDG 891
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 146 bits (371), Expect = 6e-36
Identities = 95/430 (22%), Positives = 185/430 (43%), Gaps = 12/430 (2%)
Query: 369 AYNSLLTCLGKKGRVTEAMKIFEAM-KKDARPNNTTYNVLIDMLCKA-GNFEDALKFRDA 426
AYN LL + GR+ + + + E M K+ + Y+ CK ++A +F
Sbjct: 376 AYNRLL----RDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKL 431
Query: 427 MKEAGLFPNVMTVNIMVDRLCKAQKLDEAFSIFEGMDHKTCTPDAVTFCSLIDGLGKNGR 486
++ P + T N+++ +Q +D A + + D + +LI K+G+
Sbjct: 432 IRN----PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGK 487
Query: 487 VDDAYKFYEKMLDTDQIPNAILYTSLIRNFFKHGRKEDGHKIYKEMVQRGCSPDLMLLNT 546
VD ++ + +M++ N + +LI + G+ Y M + PD ++ N
Sbjct: 488 VDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNA 547
Query: 547 YMDCVFKAGETEKGRALFEEIKAQG--FVPDVQSYSILIHGLVKAGFAHETDQLFYAMKK 604
+ ++G ++ + E+KA+ PD + L+ AG +++ + +
Sbjct: 548 LISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHE 607
Query: 605 QGCVLDTRAYNTVVDGFCKSGKVNKAYQLLEEMKTKGHYPTVVTYGSVIDGLAKIDRLDE 664
Y V+ + G + A + ++MK KG P V + +++D LD+
Sbjct: 608 YNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDK 667
Query: 665 AYMLFEEAKSKGIELNTVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNAYTWNCLLD 724
A+ + ++A+ +GI+L TV YSSL+ +A + E++ L P T N L+
Sbjct: 668 AFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALIT 727
Query: 725 ALVKAEEISEAFVCFQSMKDLKCTPNHVTYSIIINGLCRVRKFNKAFVFWQEMQKQGFKP 784
AL + ++ +A MK L PN +TYSI++ R + + ++ G KP
Sbjct: 728 ALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKP 787
Query: 785 NTITYTTMIS 794
N + +
Sbjct: 788 NLVMCRCITG 797
|
Length = 1060 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 121 bits (304), Expect = 6e-28
Identities = 138/679 (20%), Positives = 267/679 (39%), Gaps = 132/679 (19%)
Query: 224 EVSVHLFTTLIRVFAREGRVDDALFLLDEMKNNAFSVD----IVLYNVCIDCFGKVGKVD 279
S H + +R G+++ AL LL+ M+ VD + L+ +C
Sbjct: 48 SSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLC----------- 96
Query: 280 MAWKFFHE--MKAQGVAPDDVTYTS------MIGVLCKSKRLEEAVAMFEQM-DRNREVP 330
WK E + A M+ + + L A +F +M +R+
Sbjct: 97 -EWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERD---- 151
Query: 331 CAYAYNTMIMGYGSVGKFDEAFSLFERLKQKGCIPSVIAY-------------------- 370
+++N ++ GY G FDEA L+ R+ G P V +
Sbjct: 152 -LFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVH 210
Query: 371 ---------------NSLLTCLGKKGRVTEAMKIFEAMKKDARPNNTTYNVLIDMLCKAG 415
N+L+T K G V A +F+ M R + ++N +I +G
Sbjct: 211 AHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRM---PRRDCISWNAMI-----SG 262
Query: 416 NFED-----ALKFRDAMKEAGLFPNVMTVNIMVDRLCKAQKLDEAFSI-FEGMDHKTCTP 469
FE+ L+ M+E + P++MT+ V C+ DE G KT
Sbjct: 263 YFENGECLEGLELFFTMRELSVDPDLMTIT-SVISACELLG-DERLGREMHGYVVKTGFA 320
Query: 470 DAVTFC-SLIDGLGKNGRVDDAYKFYEKMLDTDQIPNAILYTSLIRNFFKHGRKEDGHKI 528
V+ C SLI G +A K + +M D A+ +T++I + K+G + +
Sbjct: 321 VDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKD----AVSWTAMISGYEKNGLPDKALET 376
Query: 529 YKEMVQRGCSPDLMLLNTYMDCVFKAGETEKGRALFEEIKAQGFVPDVQSYSILIHGLVK 588
Y M Q SPD + + + + G+ + G L E + +G + SY ++
Sbjct: 377 YALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLI----SYVVVA----- 427
Query: 589 AGFAHETDQLFYAMKKQGCVLDTRAYNTVVDGFCKSGKVNKAYQLLEEMKTKGHYPTVVT 648
N +++ + K ++KA ++ + K V++
Sbjct: 428 --------------------------NALIEMYSKCKCIDKALEVFHNIPEK----DVIS 457
Query: 649 YGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNTVIYSSLIDGFGKVGRIDEAYLIMEELM 708
+ S+I GL +R EA + F + ++ N+V + + ++G + I ++
Sbjct: 458 WTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNSVTLIAALSACARIGALMCGKEIHAHVL 516
Query: 709 QKGLTPNAYTWNCLLDALVKAEEISEAFVCFQSMKDLKCTPNHVTYSIIINGLCRVRKFN 768
+ G+ + + N LLD V+ ++ A+ F S + V+++I++ G K +
Sbjct: 517 RTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNS-----HEKDVVSWNILLTGYVAHGKGS 571
Query: 769 KAFVFWQEMQKQGFKPNTITYTTMISGLAKAGNITEANGLFERFKENGGV-PDSACYNAM 827
A + M + G P+ +T+ +++ +++G +T+ F +E + P+ Y +
Sbjct: 572 MAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACV 631
Query: 828 MEGLSNANRAMDAYTLFEE 846
++ L A + +AY +
Sbjct: 632 VDLLGRAGKLTEAYNFINK 650
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 120 bits (303), Expect = 6e-28
Identities = 144/639 (22%), Positives = 249/639 (38%), Gaps = 98/639 (15%)
Query: 276 GKVDMAWKFFHEMKAQGVAPDDVTYTSMIGVLCKSKRLEEAVAMFEQMDRNREVPCAYAY 335
G+++ A K M+ V D+ Y ++ LC+ KR E C+ A
Sbjct: 65 GQLEQALKLLESMQELRVPVDEDAYVALFR-LCEWKRAVEE----------GSRVCSRAL 113
Query: 336 NTMIMGYGSVGKFDEAFSLFERLKQKGCIPSVIAYNSLLTCLGKKGRVTEAMKIFEAMKK 395
++ SL RL N++L+ + G + A +F M
Sbjct: 114 SSHP-------------SLGVRLG-----------NAMLSMFVRFGELVHAWYVFGKM-- 147
Query: 396 DARPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEAGLFPNVMTVNIMVDRLC------KA 449
+ ++NVL+ KAG F++AL M AG+ P+V T V R C
Sbjct: 148 -PERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPC-VLRTCGGIPDLAR 205
Query: 450 QKLDEAFSIFEGMDHKTCTPDAVTFCSLIDGLGKNGRVDDAYKFYEKMLDTDQIPNAILY 509
+ A + G + D V +LI K G V A +++M D I +
Sbjct: 206 GREVHAHVVRFGFELDV---DVVN--ALITMYVKCGDVVSARLVFDRMPRRDCIS----W 256
Query: 510 TSLIRNFFKHGRKEDGHKIYKEMVQRGCSPDLMLLNTYMDCVFKAGETEKGRALFEEIKA 569
++I +F++G +G +++ M + PDLM + + + G+ GR + +
Sbjct: 257 NAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVK 316
Query: 570 QGFVPDVQSYSILIHGLVKAGFAHETDQLFYAMKKQGCVLDTRAYNTVVDGFCKSGKVNK 629
GF DV + LI + G E +++F M+ + D ++ ++ G+ K+G +K
Sbjct: 317 TGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETK----DAVSWTAMISGYEKNGLPDK 372
Query: 630 AYQLLEEMKTKGHYPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNTVIYSSLID 689
A + M+ P +T SV+ A + LD L E A+ KG+ V+ ++LI+
Sbjct: 373 ALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIE 432
Query: 690 GFGKVGRIDEAYLIMEELMQKGLTPNAYTWNCLLDALVKAEEISEAFVCFQSMKDLKCTP 749
+ K ID+A + + +K + +W ++ L EA + F+ M L P
Sbjct: 433 MYSKCKCIDKALEVFHNIPEK----DVISWTSIIAGLRLNNRCFEALIFFRQML-LTLKP 487
Query: 750 NHVTYSIIIN-----GLCRVRKFNKAFVFWQEMQKQGFKPNTI----------------- 787
N VT ++ G K A V + GF PN +
Sbjct: 488 NSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQF 547
Query: 788 --------TYTTMISGLAKAGNITEANGLFERFKENGGVPDSACYNAMMEGLSNANRAMD 839
++ +++G G + A LF R E+G PD + +++ S +
Sbjct: 548 NSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQ 607
Query: 840 AYTLFEETRRKGF---NIHTKTCVILLDALHKAECLEQA 875
F K N+ CV+ D L +A L +A
Sbjct: 608 GLEYFHSMEEKYSITPNLKHYACVV--DLLGRAGKLTEA 644
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 114 bits (287), Expect = 5e-26
Identities = 114/522 (21%), Positives = 216/522 (41%), Gaps = 69/522 (13%)
Query: 194 AYTTLIGALATVRESNLMLNLFHQMQ---------------------------------- 219
++ L+G A + L L+H+M
Sbjct: 154 SWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHV 213
Query: 220 -ELGYEVSVHLFTTLIRVFAREGRVDDALFLLDEMKNNAFSVDIVLYNVCIDCFGKVGKV 278
G+E+ V + LI ++ + G V A + D M D + +N I + + G+
Sbjct: 214 VRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGEC 269
Query: 279 DMAWKFFHEMKAQGVAPDDVTYTSMIGV--LCKSKRLEEAVAMFEQMDRNREVPCAYA-- 334
+ F M+ V PD +T TS+I L +RL + + V +A
Sbjct: 270 LEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGY-------VVKTGFAVD 322
Query: 335 ---YNTMIMGYGSVGKFDEAFSLFERLKQKGCIPSVIAYNSLLTCLGKKGRVTEAMKIFE 391
N++I Y S+G + EA +F R++ K +++ ++++ K G +A++ +
Sbjct: 323 VSVCNSLIQMYLSLGSWGEAEKVFSRMETK----DAVSWTAMISGYEKNGLPDKALETYA 378
Query: 392 AMKKDA-RPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEAGLFPNVMTVNIMVDRLCKAQ 450
M++D P+ T ++ G+ + +K + + GL V+ N +++ K +
Sbjct: 379 LMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCK 438
Query: 451 KLDEAFSIFEGMDHKTCTPDAVTFCSLIDGLGKNGRVDDAYKFYEKMLDTDQIPNAILYT 510
+D+A +F + K D +++ S+I GL N R +A F+ +ML T + PN++
Sbjct: 439 CIDKALEVFHNIPEK----DVISWTSIIAGLRLNNRCFEALIFFRQMLLTLK-PNSVTLI 493
Query: 511 SLIRNFFKHGRKEDGHKIYKEMVQRGCSPDLMLLNTYMDCVFKAGETEKGRALFEEIKAQ 570
+ + + G G +I+ +++ G D L N +D + G F +
Sbjct: 494 AALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEK- 552
Query: 571 GFVPDVQSYSILIHGLVKAGFAHETDQLFYAMKKQGCVLDTRAYNTVVDGFCKSGKVNKA 630
DV S++IL+ G V G +LF M + G D + +++ +SG V +
Sbjct: 553 ----DVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQG 608
Query: 631 YQLLEEMKTKGHY-PTVVTYGSVIDGLAKIDRLDEAYMLFEE 671
+ M+ K P + Y V+D L + +L EAY +
Sbjct: 609 LEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINK 650
|
Length = 857 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 111 bits (279), Expect = 7e-25
Identities = 105/455 (23%), Positives = 189/455 (41%), Gaps = 62/455 (13%)
Query: 445 RLCKAQKLDEAFSIFEGMDHK-TCTPDAVTFCSLIDGLGKNGRVDDAYKFYEKMLDTDQI 503
RL + ++ + + E M+ + D + K V +A++F I
Sbjct: 379 RLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRF------AKLI 432
Query: 504 PNAILYT-SLIRNFFKHGRKEDGHKIYKEMVQ-RGCSPDLMLLNTYMDCVFKAGETEKGR 561
N L T +++ + + DG +VQ G D L T + K+G+ +
Sbjct: 433 RNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMF 492
Query: 562 ALFEEIKAQGFVPDVQSYSILIHGLVKAGFAHETDQLFYA---MKKQGCVLDTRAYNTVV 618
+F E+ G +V ++ LI G +AG + + F A M+ + D +N ++
Sbjct: 493 EVFHEMVNAGVEANVHTFGALIDGCARAG---QVAKAFGAYGIMRSKNVKPDRVVFNALI 549
Query: 619 DGFCKSGKVNKAYQLLEEMKTKGH--YPTVVTYGSVIDGLAK---IDRLDEAYMLFEEAK 673
+SG V++A+ +L EMK + H P +T G+++ A +DR E Y + E
Sbjct: 550 SACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYN 609
Query: 674 SKGIELNTVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNAYTWNCLLDALVKAEEIS 733
KG +Y+ ++ + G D A I +++ +KG+ P+ ++ L+D A ++
Sbjct: 610 IKG---TPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLD 666
Query: 734 EAFVCFQSMKDLKCTPNHVTYSIIINGLCRVRKFNKAFVFWQEMQKQGFKPNTITYTTMI 793
+AF I+ Q+ +KQG K T++Y++++
Sbjct: 667 KAF------------------EIL-----------------QDARKQGIKLGTVSYSSLM 691
Query: 794 SGLAKAGNITEANGLFERFKENGGVPDSACYNAMMEGLSNANRAMDAYTLFEETRRKGFN 853
+ A N +A L+E K P + NA++ L N+ A + E +R G
Sbjct: 692 GACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLC 751
Query: 854 IHTKTCVILLDALHKAECLEQAAIVGAVLRETAKS 888
+T T ILL A + + A VG L AK
Sbjct: 752 PNTITYSILLVASER----KDDADVGLDLLSQAKE 782
|
Length = 1060 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 107 bits (268), Expect = 1e-23
Identities = 118/540 (21%), Positives = 231/540 (42%), Gaps = 75/540 (13%)
Query: 222 GYEVSVHLFTTLIRVFAREGRVDDALFLLDEMKNNAFSVDIVLYNVCIDCFGKVGKVDMA 281
G+E+ V + LI ++ + G V A + D M D + +N I + + G+
Sbjct: 217 GFELDVDVVNALITMYVKCGDVVSARLVFDRMPRR----DCISWNAMISGYFENGECLEG 272
Query: 282 WKFFHEMKAQGVAPDDVTYTSMIGV--LCKSKRLEEAVAMFEQMDRNREVPCAYA----- 334
+ F M+ V PD +T TS+I L +RL + + V +A
Sbjct: 273 LELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYV-------VKTGFAVDVSV 325
Query: 335 YNTMIMGYGSVGKFDEAFSLFERLKQKGCIPSVIAYNSLLTCLGKKGRVTEAMKIFEAMK 394
N++I Y S+G + EA +F R++ K +++ ++++ K G +A++ + M+
Sbjct: 326 CNSLIQMYLSLGSWGEAEKVFSRMETK----DAVSWTAMISGYEKNGLPDKALETYALME 381
Query: 395 KDA-RPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEAGLFPNVMTVNIMVDRLCKAQKLD 453
+D P+ T ++ G+ + +K + + GL V+ N +++ K + +D
Sbjct: 382 QDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCID 441
Query: 454 EAFSIFEGMDHKTCTPDAVTFCSLIDGLGKNGRVDDAYKFYEKMLDTDQIPNAILYTSLI 513
+A +F + K D +++ S+I GL N R +A F+ +ML T + PN++ + +
Sbjct: 442 KALEVFHNIPEK----DVISWTSIIAGLRLNNRCFEALIFFRQMLLTLK-PNSVTLIAAL 496
Query: 514 RNFFKHGRKEDGHKIYKEMVQRGCSPDLMLLNTYMDCVFKAGET---------------- 557
+ G G +I+ +++ G D L N +D + G
Sbjct: 497 SACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVS 556
Query: 558 ---------EKGRA-----LFEEIKAQGFVPDVQSYSILIHGLVKAGFAHETDQLFYAMK 603
G+ LF + G PD ++ L+ ++G + + F++M+
Sbjct: 557 WNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSME 616
Query: 604 -KQGCVLDTRAYNTVVDGFCKSGKVNKAYQLLEEMKTKGHYPTVVTYGSVIDGLAKIDR- 661
K + + Y VVD ++GK+ +AY + +M P +G++++ +I R
Sbjct: 617 EKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPIT---PDPAVWGALLNA-CRIHRH 672
Query: 662 --LDE--AYMLFE-EAKSKGIELNTVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNA 716
L E A +FE + S G Y L + + G+ DE + + + + GLT +
Sbjct: 673 VELGELAAQHIFELDPNSVG------YYILLCNLYADAGKWDEVARVRKTMRENGLTVDP 726
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 1e-23
Identities = 108/519 (20%), Positives = 225/519 (43%), Gaps = 44/519 (8%)
Query: 139 EPLEEILGEMSLAGIGPTNNTCIELVVSCVKSKMLREAFDIIQTMRKFKFRPAFTAYTTL 198
E + L + + G + + IE +V+C + + E F+I++ F PA T Y L
Sbjct: 72 ESKDARLDDTQIRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTL-PAST-YDAL 129
Query: 199 IGALATVRESNLMLNLFHQMQELGYEVSVHLFTTLIRVFAREGRVDDALFLLDEMKNNAF 258
+ A ++ + ++ ++ G+E ++ ++ + + G + DA L DEM
Sbjct: 130 VEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPER-- 187
Query: 259 SVDIVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGVAPDDVTYTSMI------GVLCKSKR 312
++ + I G A+ F EM G + T+ M+ G ++
Sbjct: 188 --NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQ 245
Query: 313 LEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLFERLKQKGCIPSVIAYNS 372
L V + + V CA +I Y G ++A +F+ + +K + +A+NS
Sbjct: 246 LHCCVLKTGVVG-DTFVSCA-----LIDMYSKCGDIEDARCVFDGMPEK----TTVAWNS 295
Query: 373 LLTCLGKKGRVTEAMKIFEAMKKDA-RPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEAG 431
+L G EA+ ++ M+ + T++++I + + E A + + G
Sbjct: 296 MLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTG 355
Query: 432 LFPNVMTVNIMVDRLCKAQKLDEAFSIFEGMDHKTCTPDAVTFCSLIDGLGKNGRVDDAY 491
+++ +VD K ++++A ++F+ M K + +++ +LI G G +GR A
Sbjct: 356 FPLDIVANTALVDLYSKWGRMEDARNVFDRMPRK----NLISWNALIAGYGNHGRGTKAV 411
Query: 492 KFYEKMLDTDQIPNAILYTSLIRNFFKHGRKEDGHKIYKEMVQ-RGCSPDLMLLNTYMDC 550
+ +E+M+ PN + + +++ G E G +I++ M + P M ++
Sbjct: 412 EMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIEL 471
Query: 551 VFKAGETEKGRALFEEIKAQGFVPDVQSYSIL-----IHGLVKAG-FAHETDQLFYAMKK 604
+ + G ++ A+ I+ F P V ++ L IH ++ G A E +L Y M
Sbjct: 472 LGREGLLDEAYAM---IRRAPFKPTVNMWAALLTACRIHKNLELGRLAAE--KL-YGMGP 525
Query: 605 QGCVLDTRAYNTVVDGFCKSGKVNKAYQLLEEMKTKGHY 643
+ Y +++ + SG+ +A +++E +K KG
Sbjct: 526 E----KLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLS 560
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 99.2 bits (247), Expect = 3e-21
Identities = 81/397 (20%), Positives = 153/397 (38%), Gaps = 49/397 (12%)
Query: 172 MLREAFDIIQTMRKFKFRPAFTAYTTLIGALATVRESNLMLNLFHQMQELGYEVSVHLFT 231
E ++ TMR+ P T++I A + + L + + + G+ V V +
Sbjct: 268 ECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCN 327
Query: 232 TLIRVFAREGRVDDALFLLDEMKNNAFSVDIVLYNVCIDCFGKVGKVDMAWKFFHEMKAQ 291
+LI+++ G +A + M+ D V + I + K G D A + + M+
Sbjct: 328 SLIQMYLSLGSWGEAEKVFSRMETK----DAVSWTAMISGYEKNGLPDKALETYALMEQD 383
Query: 292 GVAPDDVTYTSMIGVLCKSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFDEA 351
V+PD++T S++ L+ V + E +R + N +I Y D+A
Sbjct: 384 NVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKA 443
Query: 352 FSLFERLKQKGCIPSVIAYNSLLTCLGKKGRVTEAMKIFEAMKKDARPNNTTY------- 404
+F + +K VI++ S++ L R EA+ F M +PN+ T
Sbjct: 444 LEVFHNIPEK----DVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSAC 499
Query: 405 ----------------------------NVLIDMLCKAGNFEDALKFRDAMKEAGLFPNV 436
N L+D+ + G A ++ ++ +V
Sbjct: 500 ARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEK-----DV 554
Query: 437 MTVNIMVDRLCKAQKLDEAFSIFEGMDHKTCTPDAVTFCSLIDGLGKNGRVDDAYKFYEK 496
++ NI++ K A +F M PD VTF SL+ ++G V +++
Sbjct: 555 VSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHS 614
Query: 497 MLDTDQI-PNAILYTSLIRNFFKHGRKEDGHKIYKEM 532
M + I PN Y ++ + G+ + + +M
Sbjct: 615 MEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM 651
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 86.8 bits (215), Expect = 2e-17
Identities = 94/479 (19%), Positives = 213/479 (44%), Gaps = 21/479 (4%)
Query: 381 GRVTEAMKIFEAMKKDA--RPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEAGLFPNVMT 438
GR EA+++FE ++ +TY+ L++ + ++ +G P+
Sbjct: 101 GRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYM 160
Query: 439 VNIMVDRLCKAQKLDEAFSIFEGMDHKTCTPDAVTFCSLIDGLGKNGRVDDAYKFYEKML 498
+N ++ K L +A +F+ M + + ++ ++I GL G +A+ + +M
Sbjct: 161 MNRVLLMHVKCGMLIDARRLFDEMPER----NLASWGTIIGGLVDAGNYREAFALFREMW 216
Query: 499 DTDQIPNAILYTSLIRNFFKHGRKEDGHKIYKEMVQRGCSPDLMLLNTYMDCVFKAGETE 558
+ + ++R G G +++ +++ G D + +D K G+ E
Sbjct: 217 EDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIE 276
Query: 559 KGRALFEEIKAQGFVPDVQSYSILIHGLVKAGFAHETDQLFYAMKKQGCVLDTRAYNTVV 618
R +F+ + + V +++ ++ G G++ E L+Y M+ G +D ++ ++
Sbjct: 277 DARCVFDGMPEKTTV----AWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMI 332
Query: 619 DGFCKSGKVNKAYQLLEEMKTKGHYPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIE 678
F + + A Q + G +V +++D +K R+++A +F+ K
Sbjct: 333 RIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRK--- 389
Query: 679 LNTVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNAYTWNCLLDALVKAEEISEAFVC 738
N + +++LI G+G GR +A + E ++ +G+ PN T+ +L A + + +
Sbjct: 390 -NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEI 448
Query: 739 FQSM-KDLKCTPNHVTYSIIINGLCRVRKFNKAFVFWQEMQKQGFKPNTITYTTMISGLA 797
FQSM ++ + P + Y+ +I L R ++A+ +++ FKP + +++
Sbjct: 449 FQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAM---IRRAPFKPTVNMWAALLTACR 505
Query: 798 KAGNITEANGLFERFKENGGVPDS-ACYNAMMEGLSNANRAMDAYTLFEETRRKGFNIH 855
N+ E+ G P+ Y ++ +++ R +A + E +RKG ++H
Sbjct: 506 IHKNLELGRLAAEKLYGMG--PEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMH 562
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 75.1 bits (186), Expect = 5e-17
Identities = 22/50 (44%), Positives = 33/50 (66%)
Query: 749 PNHVTYSIIINGLCRVRKFNKAFVFWQEMQKQGFKPNTITYTTMISGLAK 798
P+ VTY+ +I+G C+ K +A + EM+K+G KPN TY+ +I GL K
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 73.2 bits (181), Expect = 2e-16
Identities = 24/49 (48%), Positives = 33/49 (67%)
Query: 261 DIVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGVAPDDVTYTSMIGVLCK 309
D+V YN ID + K GKV+ A K F+EMK +G+ P+ TY+ +I LCK
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 70.9 bits (175), Expect = 2e-15
Identities = 26/49 (53%), Positives = 33/49 (67%)
Query: 610 DTRAYNTVVDGFCKSGKVNKAYQLLEEMKTKGHYPTVVTYGSVIDGLAK 658
D YNT++DG+CK GKV +A +L EMK +G P V TY +IDGL K
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 70.1 bits (173), Expect = 3e-15
Identities = 21/50 (42%), Positives = 29/50 (58%)
Query: 714 PNAYTWNCLLDALVKAEEISEAFVCFQSMKDLKCTPNHVTYSIIINGLCR 763
P+ T+N L+D K ++ EA F MK PN TYSI+I+GLC+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 67.4 bits (166), Expect = 3e-14
Identities = 26/50 (52%), Positives = 35/50 (70%), Gaps = 1/50 (2%)
Query: 365 PSVIAYNSLLTCLGKKGRVTEAMKIFEAMKK-DARPNNTTYNVLIDMLCK 413
P V+ YN+L+ KKG+V EA+K+F MKK +PN TY++LID LCK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 65.9 bits (162), Expect = 8e-14
Identities = 26/50 (52%), Positives = 34/50 (68%)
Query: 399 PNNTTYNVLIDMLCKAGNFEDALKFRDAMKEAGLFPNVMTVNIMVDRLCK 448
P+ TYN LID CK G E+ALK + MK+ G+ PNV T +I++D LCK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 62.8 bits (154), Expect = 1e-12
Identities = 25/50 (50%), Positives = 32/50 (64%)
Query: 644 PTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNTVIYSSLIDGFGK 693
P VVTY ++IDG K +++EA LF E K +GI+ N YS LIDG K
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 62.4 bits (153), Expect = 2e-12
Identities = 21/50 (42%), Positives = 29/50 (58%)
Query: 330 PCAYAYNTMIMGYGSVGKFDEAFSLFERLKQKGCIPSVIAYNSLLTCLGK 379
P YNT+I GY GK +EA LF +K++G P+V Y+ L+ L K
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 60.5 bits (148), Expect = 7e-12
Identities = 20/49 (40%), Positives = 35/49 (71%)
Query: 680 NTVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNAYTWNCLLDALVK 728
+ V Y++LIDG+ K G+++EA + E+ ++G+ PN YT++ L+D L K
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 68.0 bits (166), Expect = 2e-11
Identities = 65/260 (25%), Positives = 107/260 (41%), Gaps = 52/260 (20%)
Query: 197 TLIGAL-ATVRESNLMLNLFHQMQELGYEVSVHLFTT-----------LIRVFAREGRVD 244
TLI AL A R LM G E+ H+ T L+ ++ R GR++
Sbjct: 491 TLIAALSACARIGALMC---------GKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMN 541
Query: 245 DALFLLDEMKNNAFSV---DIVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGVAPDDVTYT 301
A N F+ D+V +N+ + + GK MA + F+ M GV PD+VT+
Sbjct: 542 YAW--------NQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFI 593
Query: 302 SMIGVLCKSKRLEEAVAMFEQMDRNREV-PCAYAYNTMIMGYGSVGKFDEAFSLFERLKQ 360
S++ +S + + + F M+ + P Y ++ G GK EA++ ++
Sbjct: 594 SLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPI 653
Query: 361 KGCIPSVIAYNSLLT-C-------LGKKGRVTEAMKIFEAMKKDARPNNTTYNVLIDMLC 412
P + +LL C LG+ A IFE Y +L ++
Sbjct: 654 T---PDPAVWGALLNACRIHRHVELGE----LAAQHIFELDPNSV----GYYILLCNLYA 702
Query: 413 KAGNFEDALKFRDAMKEAGL 432
AG +++ + R M+E GL
Sbjct: 703 DAGKWDEVARVRKTMRENGL 722
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 59.0 bits (144), Expect = 2e-11
Identities = 20/50 (40%), Positives = 30/50 (60%)
Query: 434 PNVMTVNIMVDRLCKAQKLDEAFSIFEGMDHKTCTPDAVTFCSLIDGLGK 483
P+V+T N ++D CK K++EA +F M + P+ T+ LIDGL K
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 58.2 bits (142), Expect = 4e-11
Identities = 18/50 (36%), Positives = 28/50 (56%)
Query: 784 PNTITYTTMISGLAKAGNITEANGLFERFKENGGVPDSACYNAMMEGLSN 833
P+ +TY T+I G K G + EA LF K+ G P+ Y+ +++GL
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 57.4 bits (140), Expect = 8e-11
Identities = 20/50 (40%), Positives = 28/50 (56%)
Query: 469 PDAVTFCSLIDGLGKNGRVDDAYKFYEKMLDTDQIPNAILYTSLIRNFFK 518
PD VT+ +LIDG K G+V++A K + +M PN Y+ LI K
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 55.5 bits (135), Expect = 4e-10
Identities = 18/48 (37%), Positives = 28/48 (58%)
Query: 295 PDDVTYTSMIGVLCKSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGY 342
PD VTY ++I CK ++EEA+ +F +M + P Y Y+ +I G
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 62.2 bits (151), Expect = 8e-10
Identities = 57/257 (22%), Positives = 99/257 (38%), Gaps = 36/257 (14%)
Query: 651 SVIDGLAKIDRLDEAYMLFEEAKSKG-IELNTVIYSSLIDGFGKVGRIDEAYLIMEELMQ 709
S I+ L R EA LFE ++ L Y +L++ + I + +
Sbjct: 92 SQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVES 151
Query: 710 KGLTPNAYTWNCLLDALVKAEEISEAFVCFQSMKDLKCTPNHVTYSIIINGLCRVRKFNK 769
G P+ Y N +L VK + +A F M + N ++ II GL + +
Sbjct: 152 SGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYRE 207
Query: 770 AFVFWQEMQKQGFKPNTITYTTMI-----SGLAKAG--------------NITEANGLFE 810
AF ++EM + G T+ M+ G A+AG + + L +
Sbjct: 208 AFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALID 267
Query: 811 RFKENGGVPDSAC------------YNAMMEGLSNANRAMDAYTLFEETRRKGFNIHTKT 858
+ + G + D+ C +N+M+ G + + +A L+ E R G +I T
Sbjct: 268 MYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFT 327
Query: 859 CVILLDALHKAECLEQA 875
I++ + LE A
Sbjct: 328 FSIMIRIFSRLALLEHA 344
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 54.7 bits (133), Expect = 8e-10
Identities = 21/50 (42%), Positives = 29/50 (58%)
Query: 574 PDVQSYSILIHGLVKAGFAHETDQLFYAMKKQGCVLDTRAYNTVVDGFCK 623
PDV +Y+ LI G K G E +LF MKK+G + Y+ ++DG CK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 53.5 bits (130), Expect = 2e-09
Identities = 15/34 (44%), Positives = 26/34 (76%)
Query: 605 QGCVLDTRAYNTVVDGFCKSGKVNKAYQLLEEMK 638
+G D YNT++DG C++G+V++A +LL+EM+
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 51.6 bits (125), Expect = 7e-09
Identities = 16/33 (48%), Positives = 23/33 (69%)
Query: 465 KTCTPDAVTFCSLIDGLGKNGRVDDAYKFYEKM 497
K PD VT+ +LIDGL + GRVD+A + ++M
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 56.8 bits (135), Expect = 1e-08
Identities = 52/257 (20%), Positives = 93/257 (36%), Gaps = 4/257 (1%)
Query: 171 KMLREAFDIIQTMRKFKFRPAFTAYTTLIGALATVRESNLMLNLFHQMQELGYEVS-VHL 229
K L A I+ A + L + E L L + EL L
Sbjct: 2 KDLLLALAILLEALAKLLAEALALLEAGLALLELLGELAEALELLEEALELLPNSDLAGL 61
Query: 230 FTTLIRVFAREGRVDDALFLLDEM-KNNAFSVDIVLYNVCIDCFGKVGKVDMAWKFFHEM 288
L + GR+++AL LL++ + +GK + A + +
Sbjct: 62 LLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKA 121
Query: 289 KAQGVAPDDVTYTSMIGVLCKSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMG--YGSVG 346
A PD +G L + EEA+ ++E+ A + +G ++G
Sbjct: 122 LALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALG 181
Query: 347 KFDEAFSLFERLKQKGCIPSVIAYNSLLTCLGKKGRVTEAMKIFEAMKKDARPNNTTYNV 406
+++EA L E+ + A +L K G+ EA++ +E + N
Sbjct: 182 RYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYN 241
Query: 407 LIDMLCKAGNFEDALKF 423
L +L + G +E+AL+
Sbjct: 242 LALLLLELGRYEEALEA 258
|
Length = 291 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 50.5 bits (122), Expect = 2e-08
Identities = 23/50 (46%), Positives = 32/50 (64%)
Query: 539 PDLMLLNTYMDCVFKAGETEKGRALFEEIKAQGFVPDVQSYSILIHGLVK 588
PD++ NT +D K G+ E+ LF E+K +G P+V +YSILI GL K
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 49.3 bits (119), Expect = 5e-08
Identities = 14/33 (42%), Positives = 25/33 (75%)
Query: 291 QGVAPDDVTYTSMIGVLCKSKRLEEAVAMFEQM 323
+G+ PD VTY ++I LC++ R++EAV + ++M
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 54.9 bits (130), Expect = 7e-08
Identities = 50/239 (20%), Positives = 93/239 (38%), Gaps = 6/239 (2%)
Query: 276 GKVDMAWKFFHEMKAQGVAPDDVTYTSMIG-VLCKSKRLEEAVAMFEQMDRNREVPC-AY 333
G++ A + E D ++ L K RLEEA+ + E+ +P A
Sbjct: 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAE 96
Query: 334 AYNTMIMGYGSVGKFDEAFSLFERLKQKGCIPSVIAYNSLLTCLGKKGRVTEAMKIFEAM 393
A + + ++GK++EA L E+ P + L L + G EA++++E
Sbjct: 97 ALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKA 156
Query: 394 KKDARPNN---TTYNVLIDMLCKAGNFEDALKFRDAMKEAGLFPNVMTVNIMVDRLCKAQ 450
+ N L +L G +E+AL+ + + + + + K
Sbjct: 157 LELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLG 216
Query: 451 KLDEAFSIFEGMDHKTCTPDAVTFCSLIDGLGKNGRVDDAYKFYEKMLDTDQIPNAILY 509
K +EA +E + +A +L L + GR ++A + EK L+ D +
Sbjct: 217 KYEEALEYYE-KALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPDLYNLGL 274
|
Length = 291 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 47.8 bits (115), Expect = 1e-07
Identities = 12/35 (34%), Positives = 25/35 (71%)
Query: 752 VTYSIIINGLCRVRKFNKAFVFWQEMQKQGFKPNT 786
VTY+ +I+GLC+ + +A ++EM+++G +P+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 47.0 bits (113), Expect = 3e-07
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 747 CTPNHVTYSIIINGLCRVRKFNKAFVFWQEMQ 778
P+ VTY+ +I+GLCR + ++A EM+
Sbjct: 3 LKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 46.2 bits (111), Expect = 6e-07
Identities = 14/32 (43%), Positives = 23/32 (71%)
Query: 431 GLFPNVMTVNIMVDRLCKAQKLDEAFSIFEGM 462
GL P+V+T N ++D LC+A ++DEA + + M
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 45.9 bits (110), Expect = 7e-07
Identities = 16/35 (45%), Positives = 21/35 (60%)
Query: 263 VLYNVCIDCFGKVGKVDMAWKFFHEMKAQGVAPDD 297
V YN ID K G+V+ A + F EMK +G+ PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 45.8 bits (110), Expect = 9e-07
Identities = 14/31 (45%), Positives = 22/31 (70%)
Query: 398 RPNNTTYNVLIDMLCKAGNFEDALKFRDAMK 428
+P+ TYN LID LC+AG ++A++ D M+
Sbjct: 4 KPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 45.0 bits (108), Expect = 1e-06
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 780 QGFKPNTITYTTMISGLAKAGNITEANGLFER 811
+G KP+ +TY T+I GL +AG + EA L +
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDE 32
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 44.8 bits (107), Expect = 2e-06
Identities = 20/34 (58%), Positives = 24/34 (70%)
Query: 403 TYNVLIDMLCKAGNFEDALKFRDAMKEAGLFPNV 436
TYN LID LCKAG E+AL+ MKE G+ P+V
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 44.4 bits (106), Expect = 3e-06
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 333 YAYNTMIMGYGSVGKFDEAFSLFERLKQKGCIPSV 367
YNT+I G G+ +EA LF+ +K++G P V
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 44.0 bits (105), Expect = 3e-06
Identities = 17/35 (48%), Positives = 25/35 (71%)
Query: 612 RAYNTVVDGFCKSGKVNKAYQLLEEMKTKGHYPTV 646
YNT++DG CK+G+V +A +L +EMK +G P V
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 44.4 bits (106), Expect = 3e-06
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 333 YAYNTMIMGYGSVGKFDEAFSLFERLKQKGC 363
YN++I GY GK +EA LF+ +K+KG
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 43.5 bits (104), Expect = 4e-06
Identities = 14/32 (43%), Positives = 24/32 (75%)
Query: 675 KGIELNTVIYSSLIDGFGKVGRIDEAYLIMEE 706
KG++ + V Y++LIDG + GR+DEA +++E
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDE 32
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 43.1 bits (103), Expect = 7e-06
Identities = 14/34 (41%), Positives = 23/34 (67%)
Query: 361 KGCIPSVIAYNSLLTCLGKKGRVTEAMKIFEAMK 394
KG P V+ YN+L+ L + GRV EA+++ + M+
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 42.8 bits (102), Expect = 1e-05
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 819 PDSACYNAMMEGLSNANRAMDAYTLFEETRRKGFNIHTKTCVILLDALHK 868
PD YN +++G + +A LF E +++G + T IL+D L K
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 47.9 bits (112), Expect = 1e-05
Identities = 44/226 (19%), Positives = 83/226 (36%), Gaps = 5/226 (2%)
Query: 347 KFDEAFSLFERLKQKGCIPSVIAYNSLLTCLGKKGRVTEAMKIFEAMKKDARPNNT--TY 404
A ++ K ++ + L L G + EA+++ E + ++
Sbjct: 3 DLLLALAILLEALAKLLAEALALLEAGLALLELLGELAEALELLEEALELLPNSDLAGLL 62
Query: 405 NVLIDMLCKAGNFEDALK-FRDAMKEAGLFPNVMTVNIMVDRLCKAQKLDEAFSIFEGMD 463
+L L K G E+AL+ A++ L + + L K +EA + E
Sbjct: 63 LLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKAL 122
Query: 464 HKTCTPDAVTFCSLIDGLGKNGRVDDAYKFYEKMLDTDQIPN--AILYTSLIRNFFKHGR 521
PD + L + G ++A + YEK L+ D N A +L GR
Sbjct: 123 ALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGR 182
Query: 522 KEDGHKIYKEMVQRGCSPDLMLLNTYMDCVFKAGETEKGRALFEEI 567
E+ ++ ++ ++ D L K G+ E+ +E+
Sbjct: 183 YEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKA 228
|
Length = 291 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 41.6 bits (99), Expect = 2e-05
Identities = 17/32 (53%), Positives = 22/32 (68%)
Query: 640 KGHYPTVVTYGSVIDGLAKIDRLDEAYMLFEE 671
KG P VVTY ++IDGL + R+DEA L +E
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDE 32
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 2e-05
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 298 VTYTSMIGVLCKSKRLEEAVAMFEQMDRNREVP 330
VTY ++I LCK+ R+EEA+ +F++M P
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEP 33
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 41.2 bits (98), Expect = 3e-05
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 222 GYEVSVHLFTTLIRVFAREGRVDDALFLLDEMK 254
G + V + TLI R GRVD+A+ LLDEM+
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 41.3 bits (98), Expect = 3e-05
Identities = 14/29 (48%), Positives = 23/29 (79%)
Query: 613 AYNTVVDGFCKSGKVNKAYQLLEEMKTKG 641
YN+++ G+CK+GK+ +A +L +EMK KG
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKG 30
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 4e-05
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 507 ILYTSLIRNFFKHGRKEDGHKIYKEMVQRGCSPD 540
+ Y +LI K GR E+ +++KEM +RG PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 40.5 bits (96), Expect = 5e-05
Identities = 18/35 (51%), Positives = 22/35 (62%)
Query: 787 ITYTTMISGLAKAGNITEANGLFERFKENGGVPDS 821
+TY T+I GL KAG + EA LF+ KE G PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 40.5 bits (96), Expect = 5e-05
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 298 VTYTSMIGVLCKSKRLEEAVAMFEQMDRN 326
VTY S+I CK+ +LEEA+ +F++M
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEK 29
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 40.5 bits (96), Expect = 5e-05
Identities = 16/30 (53%), Positives = 19/30 (63%)
Query: 403 TYNVLIDMLCKAGNFEDALKFRDAMKEAGL 432
TYN LI CKAG E+AL+ MKE G+
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 40.5 bits (96), Expect = 6e-05
Identities = 14/35 (40%), Positives = 25/35 (71%)
Query: 682 VIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNA 716
V Y++LIDG K GR++EA + +E+ ++G+ P+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 8e-05
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 717 YTWNCLLDALVKAEEISEAFVCFQSMKDLKCTPN 750
T+N L+D L KA + EA F+ MK+ P+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 40.2 bits (95), Expect = 8e-05
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 402 TTYNVLIDMLCKAGNFEDALKFRDAMKEAGLFP 434
TYN L+ L KAG+ + AL + MK +GL P
Sbjct: 2 ETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 1e-04
Identities = 14/35 (40%), Positives = 24/35 (68%)
Query: 472 VTFCSLIDGLGKNGRVDDAYKFYEKMLDTDQIPNA 506
VT+ +LIDGL K GRV++A + +++M + P+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 1e-04
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 787 ITYTTMISGLAKAGNITEANGLFERFKENG 816
+TY ++ISG KAG + EA LF+ KE G
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKG 30
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 1e-04
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 263 VLYNVCIDCFGKVGKVDMAWKFFHEMKAQGV 293
V YN I + K GK++ A + F EMK +GV
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 1e-04
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 262 IVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGVAP 295
+ YN + K G D+A EMKA G+ P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 44.9 bits (106), Expect = 2e-04
Identities = 54/275 (19%), Positives = 104/275 (37%), Gaps = 35/275 (12%)
Query: 143 EILGEMSLAGIGPTNNTCIELVVSCVKSKMLREAFDIIQTMRKFKFRPAFTAYTTLIGAL 202
EIL + GI + L+ +C +K ++A ++ + ++ K RP + LI AL
Sbjct: 670 EILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITAL 729
Query: 203 ATVRESNLMLNLFHQMQELGYEVSVHLFTTLIRVFAREGRVDDALFLLDEMKNNAFSVDI 262
+ L + +M+ LG + ++ L+ R+ D L LL + K + ++
Sbjct: 730 CEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNL 789
Query: 263 VLYNVCI----------DCFG-------KVGK-------VDMAWKFFHEMKAQGVAPDDV 298
V+ CI C G+ A + E + G P
Sbjct: 790 VMCR-CITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTME 848
Query: 299 TYTSMIGVLCKSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFD-EAFSLFER 357
+ ++G L + E + + + +T++ G+G ++D AFSL E
Sbjct: 849 VLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFG---EYDPRAFSLLEE 905
Query: 358 LKQKGCIPSVIAYNSLLTCLGKKGRVTEAMKIFEA 392
G +PS +++ + E + +F A
Sbjct: 906 AASLGVVPS-VSFKKSPIVID-----AEELPVFAA 934
|
Length = 1060 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 39.0 bits (92), Expect = 2e-04
Identities = 18/35 (51%), Positives = 25/35 (71%)
Query: 647 VTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNT 681
VTY ++IDGL K R++EA LF+E K +GIE +
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 39.0 bits (92), Expect = 2e-04
Identities = 11/31 (35%), Positives = 21/31 (67%)
Query: 752 VTYSIIINGLCRVRKFNKAFVFWQEMQKQGF 782
VTY+ +I+G C+ K +A ++EM+++G
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|185096 PRK15174, PRK15174, Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Score = 44.7 bits (105), Expect = 2e-04
Identities = 11/145 (7%), Positives = 36/145 (24%), Gaps = 5/145 (3%)
Query: 380 KGRVTEAMKIFEAMKKDARPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEAGLFPNVMTV 439
+ +++ + ++ +L K+ + + F +
Sbjct: 89 SSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQ--AWLAFSGNSQI 146
Query: 440 NIMVDRL-CKAQKLDEAFSIFEGMDHKTCTPDAVTFCSLIDGLGKNGRVDDAYKFYEKML 498
+ R K +A S+ + + L R+ + + +L
Sbjct: 147 FALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCL--SFLNKSRLPEDHDLARALL 204
Query: 499 DTDQIPNAILYTSLIRNFFKHGRKE 523
+ + G+ +
Sbjct: 205 PFFALERQESAGLAVDTLCAVGKYQ 229
|
Length = 656 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 38.3 bits (90), Expect = 3e-04
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 611 TRAYNTVVDGFCKSGKVNKAYQLLEEMKTKGHYP 644
YN ++ K+G + A +LEEMK G P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 38.5 bits (91), Expect = 4e-04
Identities = 12/46 (26%), Positives = 23/46 (50%)
Query: 194 AYTTLIGALATVRESNLMLNLFHQMQELGYEVSVHLFTTLIRVFAR 239
Y TLI + L LF++M++ G + +V+ ++ LI +
Sbjct: 5 TYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 38.2 bits (90), Expect = 4e-04
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 647 VTYGSVIDGLAKIDRLDEAYMLFEEAKSKGI 677
VTY S+I G K +L+EA LF+E K KG+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 6e-04
Identities = 10/28 (35%), Positives = 20/28 (71%)
Query: 472 VTFCSLIDGLGKNGRVDDAYKFYEKMLD 499
VT+ SLI G K G++++A + +++M +
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKE 28
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 37.0 bits (87), Expect = 9e-04
Identities = 11/29 (37%), Positives = 21/29 (72%)
Query: 368 IAYNSLLTCLGKKGRVTEAMKIFEAMKKD 396
+ YNSL++ K G++ EA+++F+ MK+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEK 29
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 37.1 bits (87), Expect = 0.001
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 437 MTVNIMVDRLCKAQKLDEAFSIFEGMDHKTCTPDA 471
+T N ++D LCKA +++EA +F+ M + PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 37.1 bits (87), Expect = 0.001
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 578 SYSILIHGLVKAGFAHETDQLFYAMKKQGCVLDT 611
+Y+ LI GL KAG E +LF MK++G D
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 37.0 bits (87), Expect = 0.001
Identities = 13/31 (41%), Positives = 23/31 (74%)
Query: 682 VIYSSLIDGFGKVGRIDEAYLIMEELMQKGL 712
V Y+SLI G+ K G+++EA + +E+ +KG+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 36.2 bits (85), Expect = 0.002
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 261 DIVLYNVCIDCFGKVGKVDMAWKFFHEMK 289
D+V YN ID + G+VD A + EM+
Sbjct: 6 DVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 36.3 bits (85), Expect = 0.002
Identities = 13/29 (44%), Positives = 21/29 (72%)
Query: 368 IAYNSLLTCLGKKGRVTEAMKIFEAMKKD 396
+ YN+L+ L K GRV EA+++F+ MK+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKER 29
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 35.5 bits (83), Expect = 0.003
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 230 FTTLIRVFAREGRVDDALFLLDEMKNN 256
+ +LI + + G++++AL L EMK
Sbjct: 3 YNSLISGYCKAGKLEEALELFKEMKEK 29
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 35.5 bits (83), Expect = 0.004
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 228 HLFTTLIRVFAREGRVDDALFLLDEMKNNAFSVDI 262
+ TLI + GRV++AL L EMK D+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 895 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 100.0 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 100.0 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 100.0 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.98 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.97 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.96 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.96 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.92 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.92 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.91 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.91 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.9 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.89 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.89 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.89 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.88 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.88 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.87 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.87 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.86 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.86 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.85 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.81 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.81 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.78 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.76 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.74 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.72 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.7 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.7 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.69 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.69 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.68 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.68 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.67 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.67 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.67 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.67 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.66 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.65 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.65 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.65 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.64 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.64 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.64 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.63 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.63 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.61 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.61 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.61 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.61 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.61 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.61 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.6 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.59 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.57 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.55 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.54 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.54 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.53 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.51 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.51 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.49 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.48 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.47 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.46 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.45 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.45 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.45 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.44 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.42 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.42 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.41 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.41 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.41 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.38 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.35 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.32 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.31 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.31 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.3 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.3 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.29 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.29 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.28 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.24 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.24 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.17 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 99.17 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.12 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.1 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 99.06 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.05 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 99.03 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.0 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.97 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.95 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.95 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.95 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.95 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.94 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.94 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.89 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.87 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.84 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.82 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.77 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.75 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.72 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.71 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.71 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.7 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.67 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.65 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.65 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.65 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.62 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.62 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.6 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.59 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.57 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.56 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.55 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.53 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.46 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.46 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 98.43 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.4 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.35 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 98.33 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 98.3 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 98.3 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.29 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 98.24 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.18 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.16 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 98.16 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.14 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 98.13 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.13 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.08 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.04 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 98.0 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.95 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.94 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.94 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.94 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.92 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.91 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.91 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.88 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.84 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.82 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.8 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.8 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.8 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.79 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.76 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.76 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.75 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.75 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.74 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.72 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.7 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.67 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.67 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.66 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.65 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.61 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.6 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.58 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.58 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.58 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.56 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.55 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 97.54 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.54 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.54 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.52 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.51 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.51 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.5 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.5 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.47 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.45 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.44 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.44 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 97.43 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.41 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.41 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.4 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.38 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 97.37 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.36 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.33 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.28 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.27 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 97.26 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.24 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.21 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.15 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.14 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.1 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.1 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.04 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 96.94 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.94 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 96.89 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 96.88 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 96.87 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 96.86 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.85 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.83 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.79 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 96.77 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.77 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 96.73 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.67 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.65 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.63 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.63 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.63 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 96.63 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.54 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.53 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 96.48 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.46 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 96.39 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 96.33 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.31 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 96.3 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 96.25 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 96.24 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.22 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 96.2 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 96.19 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 96.15 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 96.14 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.12 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 96.11 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 96.09 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.07 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 96.02 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 96.01 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 95.94 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 95.75 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.71 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 95.71 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 95.7 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 95.6 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 95.59 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 95.54 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 95.39 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 95.38 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 95.36 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 95.35 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 95.28 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 95.27 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 95.26 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 95.24 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 95.23 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 95.12 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 95.09 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 94.95 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 94.89 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 94.75 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 94.61 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.34 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.31 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.25 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.06 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 93.83 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 93.81 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 93.75 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 93.63 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 93.6 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 93.32 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 93.23 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 93.16 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 93.11 | |
| KOG2062 | 929 | consensus 26S proteasome regulatory complex, subun | 93.1 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 93.09 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 92.6 | |
| KOG2062 | 929 | consensus 26S proteasome regulatory complex, subun | 92.42 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 92.09 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 91.95 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 91.83 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 91.68 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 91.66 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 91.59 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 91.5 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 91.49 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 91.47 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 91.42 | |
| PRK09687 | 280 | putative lyase; Provisional | 91.29 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 91.03 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 91.02 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 91.0 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 90.91 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 90.89 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 90.68 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 90.31 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 90.0 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 89.78 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 89.75 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 89.01 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 88.91 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 88.86 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 88.32 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 88.12 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 87.92 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 87.77 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 87.75 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 87.35 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 87.09 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 86.75 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 86.28 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 85.84 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 85.59 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 85.37 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 85.25 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 84.94 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 84.93 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 84.71 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 84.62 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 84.37 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 84.03 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 83.8 | |
| COG5159 | 421 | RPN6 26S proteasome regulatory complex component [ | 83.79 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 83.32 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 82.83 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 82.59 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 82.5 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 82.36 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 82.11 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 81.95 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 81.76 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 81.76 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 81.69 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 81.38 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 81.18 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 80.73 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 80.21 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 80.16 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 80.02 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-81 Score=735.71 Aligned_cols=682 Identities=19% Similarity=0.281 Sum_probs=634.7
Q ss_pred CcCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHhHHHH
Q 002664 189 RPAFTAYTTLIGALATVRESNLMLNLFHQMQELGYEVSVHLFTTLIRVFAREGRVDDALFLLDEMKNNAFSVDIVLYNVC 268 (895)
Q Consensus 189 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 268 (895)
.++..+++.++..|++.|++++|..+|++|.+.|.+|+..+|..++..|.+.+.++.|..++..+.+.+..++..++|.+
T Consensus 48 ~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~l 127 (857)
T PLN03077 48 SSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAM 127 (857)
T ss_pred ccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHH
Confidence 55667788888888888888888888888888888888888888888888888888888888888888878888888888
Q ss_pred HHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCCH
Q 002664 269 IDCFGKVGKVDMAWKFFHEMKAQGVAPDDVTYTSMIGVLCKSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKF 348 (895)
Q Consensus 269 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 348 (895)
+.+|++.|+++.|+++|++|. .||..+|+.+|.+|++.|++++|+++|++|...|..||..||+.++.+++..+++
T Consensus 128 i~~~~~~g~~~~A~~~f~~m~----~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~ 203 (857)
T PLN03077 128 LSMFVRFGELVHAWYVFGKMP----ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDL 203 (857)
T ss_pred HHHHHhCCChHHHHHHHhcCC----CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccch
Confidence 888888888888888888886 3688888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002664 349 DEAFSLFERLKQKGCIPSVIAYNSLLTCLGKKGRVTEAMKIFEAMKKDARPNNTTYNVLIDMLCKAGNFEDALKFRDAMK 428 (895)
Q Consensus 349 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 428 (895)
..+.+++..+.+.|+.||..+++.|+.+|++.|++++|.++|++|.. +|..+|+.++.+|++.|++++|+++|.+|.
T Consensus 204 ~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~---~d~~s~n~li~~~~~~g~~~eAl~lf~~M~ 280 (857)
T PLN03077 204 ARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR---RDCISWNAMISGYFENGECLEGLELFFTMR 280 (857)
T ss_pred hhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC---CCcchhHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 88899999998889889999999999999999999999999988863 677899999999999999999999999999
Q ss_pred HCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcchhh
Q 002664 429 EAGLFPNVMTVNIMVDRLCKAQKLDEAFSIFEGMDHKTCTPDAVTFCSLIDGLGKNGRVDDAYKFYEKMLDTDQIPNAIL 508 (895)
Q Consensus 429 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 508 (895)
..|+.||..||+.++.++++.|+.+.|.+++..|.+.|+.||..+|+.++.+|++.|++++|.++|++|. .||..+
T Consensus 281 ~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s 356 (857)
T PLN03077 281 ELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVS 356 (857)
T ss_pred HcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeee
Confidence 9999999999999999999999999999999999999999999999999999999999999999999985 368889
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 002664 509 YTSLIRNFFKHGRKEDGHKIYKEMVQRGCSPDLMLLNTYMDCVFKAGETEKGRALFEEIKAQGFVPDVQSYSILIHGLVK 588 (895)
Q Consensus 509 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 588 (895)
|+.++.+|++.|++++|.++|++|.+.|+.||..+++.++.++++.|+.+.|.++++.+.+.|+.|+..+++.|+.+|++
T Consensus 357 ~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k 436 (857)
T PLN03077 357 WTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSK 436 (857)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCCHHHHHHH
Q 002664 589 AGFAHETDQLFYAMKKQGCVLDTRAYNTVVDGFCKSGKVNKAYQLLEEMKTKGHYPTVVTYGSVIDGLAKIDRLDEAYML 668 (895)
Q Consensus 589 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~ 668 (895)
.|++++|.++|++|.+ +|..+|+.++.+|++.|+.++|+.+|++|.. ++.||..||+.++.+|++.|..+.+.++
T Consensus 437 ~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i 511 (857)
T PLN03077 437 CKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEI 511 (857)
T ss_pred cCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHH
Confidence 9999999999999874 5788999999999999999999999999986 5899999999999999999999999999
Q ss_pred HHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 002664 669 FEEAKSKGIELNTVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNAYTWNCLLDALVKAEEISEAFVCFQSMKDLKCT 748 (895)
Q Consensus 669 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 748 (895)
+..+.+.|+.++..++++++++|++.|++++|.++|+.+ .||..+||+++.+|++.|+.++|+++|++|.+.|+.
T Consensus 512 ~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~ 586 (857)
T PLN03077 512 HAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVN 586 (857)
T ss_pred HHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 999999999999999999999999999999999999987 479999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCHhHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 002664 749 PNHVTYSIIINGLCRVRKFNKAFVFWQEMQ-KQGFKPNTITYTTMISGLAKAGNITEANGLFERFKENGGVPDSACYNAM 827 (895)
Q Consensus 749 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 827 (895)
||..||+.++.+|++.|.+++|.++|+.|. +.|+.|+..+|+.++.+|++.|++++|.+++++|. +.||..+|..|
T Consensus 587 Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~---~~pd~~~~~aL 663 (857)
T PLN03077 587 PDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP---ITPDPAVWGAL 663 (857)
T ss_pred CCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC---CCCCHHHHHHH
Confidence 999999999999999999999999999999 56999999999999999999999999999999984 78999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhhhhhhCC
Q 002664 828 MEGLSNANRAMDAYTLFEETRRKGFNIHTKTCVILLDALHKAECLEQAAIVGAVLRETAKSQHAARSW 895 (895)
Q Consensus 828 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~~~~~ 895 (895)
+.+|...|+.+.+....+++++. .|.+...+..|+++|...|+|++|.++.+.+++.+.+|+||+||
T Consensus 664 l~ac~~~~~~e~~e~~a~~l~~l-~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ 730 (857)
T PLN03077 664 LNACRIHRHVELGELAAQHIFEL-DPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSW 730 (857)
T ss_pred HHHHHHcCChHHHHHHHHHHHhh-CCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccE
Confidence 99999999999999999999887 47788888899999999999999999999999999999999999
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-78 Score=708.24 Aligned_cols=677 Identities=18% Similarity=0.256 Sum_probs=479.9
Q ss_pred CCCHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHH
Q 002664 119 AHSLEAYNSLLMVMAVSKNFEPLEEILGEMSLAGIGPTNNTCIELVVSCVKSKMLREAFDIIQTMRKFKFRPAFTAYTTL 198 (895)
Q Consensus 119 ~~~~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 198 (895)
++++..++.++..|++.|++++|..+|++|...|.+|+..+|..++..|.+.+..+.|..++..+.+.+..++...++.+
T Consensus 48 ~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~l 127 (857)
T PLN03077 48 SSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAM 127 (857)
T ss_pred ccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHH
Confidence 34455566666666666666666666666666555555555555555555555555555555555555545555555555
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCh
Q 002664 199 IGALATVRESNLMLNLFHQMQELGYEVSVHLFTTLIRVFAREGRVDDALFLLDEMKNNAFSVDIVLYNVCIDCFGKVGKV 278 (895)
Q Consensus 199 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 278 (895)
+..|++.|+.+.|..+|++|.+ ++..+|+.++.+|++.|++++|+.+|++|...|+.||..||+.++.+|+..+++
T Consensus 128 i~~~~~~g~~~~A~~~f~~m~~----~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~ 203 (857)
T PLN03077 128 LSMFVRFGELVHAWYVFGKMPE----RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDL 203 (857)
T ss_pred HHHHHhCCChHHHHHHHhcCCC----CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccch
Confidence 5555555555555555555532 344455555555555555555555555555555555555555555555555555
Q ss_pred hhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHH
Q 002664 279 DMAWKFFHEMKAQGVAPDDVTYTSMIGVLCKSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLFERL 358 (895)
Q Consensus 279 ~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 358 (895)
+.+.+++..|.+.|+.||..+|+.|+.+|++.|++++|.++|++|.. ||..+|++++.+|++.|++++|.++|++|
T Consensus 204 ~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~M 279 (857)
T PLN03077 204 ARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFTM 279 (857)
T ss_pred hhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHHH
Confidence 55555555555555555555555555555555555555555555432 34445555555555555555555555555
Q ss_pred HhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhh
Q 002664 359 KQKGCIPSVIAYNSLLTCLGKKGRVTEAMKIFEAMKKDARPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEAGLFPNVMT 438 (895)
Q Consensus 359 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 438 (895)
.+.|+.||..+|+. ++.++++.|+.+.|.+++..|.+.|+.||..+
T Consensus 280 ~~~g~~Pd~~ty~~----------------------------------ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~ 325 (857)
T PLN03077 280 RELSVDPDLMTITS----------------------------------VISACELLGDERLGREMHGYVVKTGFAVDVSV 325 (857)
T ss_pred HHcCCCCChhHHHH----------------------------------HHHHHHhcCChHHHHHHHHHHHHhCCccchHH
Confidence 55555555555554 45555555556666666666666666677777
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHh
Q 002664 439 VNIMVDRLCKAQKLDEAFSIFEGMDHKTCTPDAVTFCSLIDGLGKNGRVDDAYKFYEKMLDTDQIPNAILYTSLIRNFFK 518 (895)
Q Consensus 439 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 518 (895)
|+.++.+|++.|++++|.++|++|.. ||..+|+.++.+|++.|++++|.++|++|.+.+..||..+|..++.++++
T Consensus 326 ~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~ 401 (857)
T PLN03077 326 CNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACAC 401 (857)
T ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhc
Confidence 77777777777777777777766643 46666777777777777777777777777777767777777777777777
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 002664 519 HGRKEDGHKIYKEMVQRGCSPDLMLLNTYMDCVFKAGETEKGRALFEEIKAQGFVPDVQSYSILIHGLVKAGFAHETDQL 598 (895)
Q Consensus 519 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 598 (895)
.|+.++|.++++.+.+.|+.|+..+++.++.+|++.|++++|.++|++|.+ +|..+|+.++.+|++.|+.++|..+
T Consensus 402 ~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~l 477 (857)
T PLN03077 402 LGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIF 477 (857)
T ss_pred cchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHH
Confidence 777777777777777777777777777777777777777777777777653 5777888888888888888888888
Q ss_pred HHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCC
Q 002664 599 FYAMKKQGCVLDTRAYNTVVDGFCKSGKVNKAYQLLEEMKTKGHYPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIE 678 (895)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 678 (895)
|++|.. ++.||..+|+.++.+|++.|+.+.+.+++..+.+.|+.++..+++.++++|++.|++++|..+|+.+ .
T Consensus 478 f~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~ 551 (857)
T PLN03077 478 FRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----E 551 (857)
T ss_pred HHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----C
Confidence 888875 4788888888888888888888899999888888888888888889999999999999998888876 5
Q ss_pred cCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-hcCCCCCHHHHHHH
Q 002664 679 LNTVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNAYTWNCLLDALVKAEEISEAFVCFQSMK-DLKCTPNHVTYSII 757 (895)
Q Consensus 679 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~p~~~~~~~l 757 (895)
+|..+|+++|.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|.+.|++++|.++|++|. +.++.|+..+|+++
T Consensus 552 ~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~l 631 (857)
T PLN03077 552 KDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACV 631 (857)
T ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHH
Confidence 78889999999999999999999999999888889999999999999999999999999999998 57888999999999
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCC
Q 002664 758 INGLCRVRKFNKAFVFWQEMQKQGFKPNTITYTTMISGLAKAGNITEANGLFERFKENGGVP-DSACYNAMMEGLSNANR 836 (895)
Q Consensus 758 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~ 836 (895)
+++|++.|++++|.+++++|. +.||..+|++|+.+|...|+.+.+....+++.+ ..| +...|..|.+.|...|+
T Consensus 632 v~~l~r~G~~~eA~~~~~~m~---~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~--l~p~~~~~y~ll~n~ya~~g~ 706 (857)
T PLN03077 632 VDLLGRAGKLTEAYNFINKMP---ITPDPAVWGALLNACRIHRHVELGELAAQHIFE--LDPNSVGYYILLCNLYADAGK 706 (857)
T ss_pred HHHHHhCCCHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--hCCCCcchHHHHHHHHHHCCC
Confidence 999999999999999988884 788999999999998888999988888888887 667 57778888888999999
Q ss_pred HHHHHHHHHHHHHCCCCCCH
Q 002664 837 AMDAYTLFEETRRKGFNIHT 856 (895)
Q Consensus 837 ~~~A~~~~~~~~~~~~~~~~ 856 (895)
|++|.++.+.|.++|+.+++
T Consensus 707 ~~~a~~vr~~M~~~g~~k~~ 726 (857)
T PLN03077 707 WDEVARVRKTMRENGLTVDP 726 (857)
T ss_pred hHHHHHHHHHHHHcCCCCCC
Confidence 99999999999888876654
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-64 Score=572.30 Aligned_cols=546 Identities=19% Similarity=0.296 Sum_probs=460.4
Q ss_pred CCChHhHHHHHHHHHhcCChhhHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCCHHhHHH
Q 002664 259 SVDIVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGV-APDDVTYTSMIGVLCKSKRLEEAVAMFEQMDRNREVPCAYAYNT 337 (895)
Q Consensus 259 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 337 (895)
.++...|..++..+++.|++++|.++|++|.+.|+ .++..+++.++..|.+.|..++|..+|+.|.. |+..+|+.
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~ 442 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNM 442 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHH
Confidence 45667777888888888888888888888888875 45666777888888888888888888888864 78888888
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHhcCC
Q 002664 338 MIMGYGSVGKFDEAFSLFERLKQKGCIPSVIAYNSLLTCLGKKGRVTEAMKIFEAMKK-DARPNNTTYNVLIDMLCKAGN 416 (895)
Q Consensus 338 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~ 416 (895)
++.+|++.|+++.|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+ +..||..+|+.+|.+|++.|+
T Consensus 443 LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~ 522 (1060)
T PLN03218 443 LMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQ 522 (1060)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcC
Confidence 8888888888888888888888888888888888888888888888888888888865 567788888888888888888
Q ss_pred HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhhh--CCCCCChhhHHHHHHHHhhcCCHHHHHHHH
Q 002664 417 FEDALKFRDAMKEAGLFPNVMTVNIMVDRLCKAQKLDEAFSIFEGMDH--KTCTPDAVTFCSLIDGLGKNGRVDDAYKFY 494 (895)
Q Consensus 417 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 494 (895)
+++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.. .++.||..+|+.++.+|++.|++++|.++|
T Consensus 523 ~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf 602 (1060)
T PLN03218 523 VAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVY 602 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 888888898898888889999999999999999999999999988876 567888889999999999999999999999
Q ss_pred HHHHhCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC
Q 002664 495 EKMLDTDQIPNAILYTSLIRNFFKHGRKEDGHKIYKEMVQRGCSPDLMLLNTYMDCVFKAGETEKGRALFEEIKAQGFVP 574 (895)
Q Consensus 495 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 574 (895)
+.|.+.++.|+..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++++.|.+.|+.|
T Consensus 603 ~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~p 682 (1060)
T PLN03218 603 QMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKL 682 (1060)
T ss_pred HHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 99988888888889999999999999999999999999988889999999999999999999999999999999888889
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHhHHHHHH
Q 002664 575 DVQSYSILIHGLVKAGFAHETDQLFYAMKKQGCVLDTRAYNTVVDGFCKSGKVNKAYQLLEEMKTKGHYPTVVTYGSVID 654 (895)
Q Consensus 575 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 654 (895)
+..+|+.++.+|++.|++++|..+|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|...|+.||..+|+.++.
T Consensus 683 d~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~ 762 (1060)
T PLN03218 683 GTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLV 762 (1060)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 99999999999999999999999999998888889999999999999999999999999999988888999999999999
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 002664 655 GLAKIDRLDEAYMLFEEAKSKGIELNTVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNAYTWNCLLDALVKAEEISE 734 (895)
Q Consensus 655 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 734 (895)
+|++.|++++|.++|.+|.+.|+.||..+|++++..|. +++++|..+.+.+.... + .......+..++
T Consensus 763 a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~--~~y~ka~~l~~~v~~f~--~--------g~~~~~n~w~~~ 830 (1060)
T PLN03218 763 ASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL--RRFEKACALGEPVVSFD--S--------GRPQIENKWTSW 830 (1060)
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HHHHHHhhhhhhhhhhh--c--------cccccccchHHH
Confidence 99999999999999999998899999999998886544 34666666555444310 0 111112234467
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002664 735 AFVCFQSMKDLKCTPNHVTYSIIINGLCRVRKFNKAFVFWQEMQKQGFKPNTITYTTMISGLAKAGNITEANGLFERFKE 814 (895)
Q Consensus 735 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 814 (895)
|..+|++|.+.|+.||..||+.++.+++..+..+.+..+++.|...+..|+..+|+.|+.++.+. .++|..++++|.+
T Consensus 831 Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~ 908 (1060)
T PLN03218 831 ALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAAS 908 (1060)
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHH
Confidence 89999999998999999999988888888888888888888887777788888999999887432 3689999999999
Q ss_pred CCCCCCHH
Q 002664 815 NGGVPDSA 822 (895)
Q Consensus 815 ~~~~p~~~ 822 (895)
.|+.|+..
T Consensus 909 ~Gi~p~~~ 916 (1060)
T PLN03218 909 LGVVPSVS 916 (1060)
T ss_pred cCCCCCcc
Confidence 98888653
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-64 Score=570.25 Aligned_cols=546 Identities=19% Similarity=0.313 Sum_probs=409.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCC-CCHHhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHH
Q 002664 294 APDDVTYTSMIGVLCKSKRLEEAVAMFEQMDRNREV-PCAYAYNTMIMGYGSVGKFDEAFSLFERLKQKGCIPSVIAYNS 372 (895)
Q Consensus 294 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 372 (895)
.++...|..++..+++.|++++|+++|++|...++. ++..+++.++.+|.+.|..++|..+|+.|.. |+..+|+.
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~ 442 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNM 442 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHH
Confidence 345666777777777777777777777777776643 4556666677777777777777777777654 67777777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 002664 373 LLTCLGKKGRVTEAMKIFEAMKK-DARPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEAGLFPNVMTVNIMVDRLCKAQK 451 (895)
Q Consensus 373 l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 451 (895)
++.+|++.|+++.|.++|+.|.+ +..||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|+
T Consensus 443 LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~ 522 (1060)
T PLN03218 443 LMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQ 522 (1060)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcC
Confidence 77777777777777777777754 55677777777777777777777777777777777777777777777777777777
Q ss_pred hhHHHHHHHHhhhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHh--CCCCcchhhHHHHHHHHHhcCCHHHHHHHH
Q 002664 452 LDEAFSIFEGMDHKTCTPDAVTFCSLIDGLGKNGRVDDAYKFYEKMLD--TDQIPNAILYTSLIRNFFKHGRKEDGHKIY 529 (895)
Q Consensus 452 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 529 (895)
+++|.++|+.|...|+.||..+|+.++.+|++.|++++|.++|++|.. .+..||..+|+.++.+|++.|++++|.++|
T Consensus 523 ~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf 602 (1060)
T PLN03218 523 VAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVY 602 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 777777777777777777777777777777777777777777777765 456677777777777777777777777777
Q ss_pred HHHHHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 002664 530 KEMVQRGCSPDLMLLNTYMDCVFKAGETEKGRALFEEIKAQGFVPDVQSYSILIHGLVKAGFAHETDQLFYAMKKQGCVL 609 (895)
Q Consensus 530 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 609 (895)
+.|.+.|+.|+..+|+.++.+|++.|++++|..+|++|.+.|+.||..+|+.++.+|++.|+.++|.++++.|.+.|+.|
T Consensus 603 ~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~p 682 (1060)
T PLN03218 603 QMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKL 682 (1060)
T ss_pred HHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHH
Q 002664 610 DTRAYNTVVDGFCKSGKVNKAYQLLEEMKTKGHYPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNTVIYSSLID 689 (895)
Q Consensus 610 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 689 (895)
|..+|+.+|.+|++.|++++|.++|++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|...|+.||..+|+.++.
T Consensus 683 d~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~ 762 (1060)
T PLN03218 683 GTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLV 762 (1060)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHhH
Q 002664 690 GFGKVGRIDEAYLIMEELMQKGLTPNAYTWNCLLDALVKAEEISEAFVCFQSMKDLKCTPNHVTYSIIINGLCRVRKFNK 769 (895)
Q Consensus 690 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 769 (895)
+|++.|++++|.++++.|.+.|+.||..+|+.|+..|. +++++|..+.+.+.... + .......+..++
T Consensus 763 a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~--~~y~ka~~l~~~v~~f~--~--------g~~~~~n~w~~~ 830 (1060)
T PLN03218 763 ASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL--RRFEKACALGEPVVSFD--S--------GRPQIENKWTSW 830 (1060)
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HHHHHHhhhhhhhhhhh--c--------cccccccchHHH
Confidence 77777777777777777777777777777777765443 24555555544443211 0 001112234567
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002664 770 AFVFWQEMQKQGFKPNTITYTTMISGLAKAGNITEANGLFERFKENGGVPDSACYNAMMEGLSNANRAMDAYTLFEETRR 849 (895)
Q Consensus 770 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 849 (895)
|+.+|++|.+.|+.||..||+.++.+++..+..+.+..+++.+...+..|+..+|+.|++++.+. .++|..++++|..
T Consensus 831 Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~ 908 (1060)
T PLN03218 831 ALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAAS 908 (1060)
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHH
Confidence 99999999999999999999999998989999999999999998888888999999999998432 3689999999999
Q ss_pred CCCCCCHh
Q 002664 850 KGFNIHTK 857 (895)
Q Consensus 850 ~~~~~~~~ 857 (895)
.|+.|+..
T Consensus 909 ~Gi~p~~~ 916 (1060)
T PLN03218 909 LGVVPSVS 916 (1060)
T ss_pred cCCCCCcc
Confidence 99988864
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-58 Score=527.41 Aligned_cols=479 Identities=20% Similarity=0.284 Sum_probs=376.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCChhhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHH
Q 002664 401 NTTYNVLIDMLCKAGNFEDALKFRDAMKEAG-LFPNVMTVNIMVDRLCKAQKLDEAFSIFEGMDHKTCTPDAVTFCSLID 479 (895)
Q Consensus 401 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 479 (895)
...|+.++..+.+.|++++|+++|+.|...+ ..||..+|+.++.++.+.++++.+.+++..|...|+.||..+++.++.
T Consensus 87 ~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~ 166 (697)
T PLN03081 87 GVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLL 166 (697)
T ss_pred ceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 3456666666666666666666666666543 456667777777777777777777777777777777677777777777
Q ss_pred HHhhcCCHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhH
Q 002664 480 GLGKNGRVDDAYKFYEKMLDTDQIPNAILYTSLIRNFFKHGRKEDGHKIYKEMVQRGCSPDLMLLNTYMDCVFKAGETEK 559 (895)
Q Consensus 480 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 559 (895)
+|++.|++++|.++|++|. .||..+|+.++.+|++.|++++|.++|++|.+.|+.|+..++..++.++...|..+.
T Consensus 167 ~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~ 242 (697)
T PLN03081 167 MHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARA 242 (697)
T ss_pred HHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHH
Confidence 7777777777777777664 256667777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHH
Q 002664 560 GRALFEEIKAQGFVPDVQSYSILIHGLVKAGFAHETDQLFYAMKKQGCVLDTRAYNTVVDGFCKSGKVNKAYQLLEEMKT 639 (895)
Q Consensus 560 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 639 (895)
+.+++..+.+.|+.||..+++.|+.+|++.|+.++|.++|+.|. .+|..+|+.++.+|++.|++++|+++|++|.+
T Consensus 243 ~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~ 318 (697)
T PLN03081 243 GQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRD 318 (697)
T ss_pred HHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 77777777777777788888888888888888888888887775 35778888888888888888888888888888
Q ss_pred CCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHH
Q 002664 640 KGHYPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNTVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNAYTW 719 (895)
Q Consensus 640 ~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 719 (895)
.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..++++++++|++.|++++|.++|++|.+ ||..+|
T Consensus 319 ~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~ 394 (697)
T PLN03081 319 SGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISW 394 (697)
T ss_pred cCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeH
Confidence 8888888888888888888888888888888888888888888888888888888888888888888754 678888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHh
Q 002664 720 NCLLDALVKAEEISEAFVCFQSMKDLKCTPNHVTYSIIINGLCRVRKFNKAFVFWQEMQKQ-GFKPNTITYTTMISGLAK 798 (895)
Q Consensus 720 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~ 798 (895)
|+|+.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+. |+.|+..+|+.++.+|++
T Consensus 395 n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r 474 (697)
T PLN03081 395 NALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGR 474 (697)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHh
Confidence 8888888888888888888888888888888888888888888888888888888888764 788888888888888888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHH
Q 002664 799 AGNITEANGLFERFKENGGVPDSACYNAMMEGLSNANRAMDAYTLFEETRRKGFNIHTKTCVILLDALHKAECLEQAAIV 878 (895)
Q Consensus 799 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 878 (895)
.|++++|.++++++ +..|+..+|..|+.+|...|+++.|...++++.+.+ |.+..+|..|+++|.+.|+|++|.++
T Consensus 475 ~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~-p~~~~~y~~L~~~y~~~G~~~~A~~v 550 (697)
T PLN03081 475 EGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMG-PEKLNNYVVLLNLYNSSGRQAEAAKV 550 (697)
T ss_pred cCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCC-CCCCcchHHHHHHHHhCCCHHHHHHH
Confidence 88888888887665 467888888888888888888888888888887653 55667788888888888888888888
Q ss_pred HHHHHHHHHhhhhhhCC
Q 002664 879 GAVLRETAKSQHAARSW 895 (895)
Q Consensus 879 ~~~l~~~~~~~~~~~~~ 895 (895)
.+.+.+.+.++.|++||
T Consensus 551 ~~~m~~~g~~k~~g~s~ 567 (697)
T PLN03081 551 VETLKRKGLSMHPACTW 567 (697)
T ss_pred HHHHHHcCCccCCCeeE
Confidence 88888888888888887
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-57 Score=514.01 Aligned_cols=512 Identities=19% Similarity=0.301 Sum_probs=396.4
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHhhCC-CCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 002664 296 DDVTYTSMIGVLCKSKRLEEAVAMFEQMDRNR-EVPCAYAYNTMIMGYGSVGKFDEAFSLFERLKQKGCIPSVIAYNSLL 374 (895)
Q Consensus 296 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 374 (895)
+..+|+.++..+.+.|++++|+++|+.|...+ ..|+..+|+.++.++.+.++++.|.+++..|.+.|+.||..+|+.++
T Consensus 86 ~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li 165 (697)
T PLN03081 86 SGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVL 165 (697)
T ss_pred CceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHH
Confidence 33445555555555555555555555554432 33455555555555555555555555555555555555656666666
Q ss_pred HHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhH
Q 002664 375 TCLGKKGRVTEAMKIFEAMKKDARPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEAGLFPNVMTVNIMVDRLCKAQKLDE 454 (895)
Q Consensus 375 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 454 (895)
.+|++.|+++.|.++|++|.+ +|..+|+.++.+|++.|++++|.++|++|.+.|+.|+..+|+.++.+++..|..+.
T Consensus 166 ~~y~k~g~~~~A~~lf~~m~~---~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~ 242 (697)
T PLN03081 166 LMHVKCGMLIDARRLFDEMPE---RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARA 242 (697)
T ss_pred HHHhcCCCHHHHHHHHhcCCC---CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHH
Confidence 666666666666666665542 46666777777777777777777777788777888888888888888888888888
Q ss_pred HHHHHHHhhhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002664 455 AFSIFEGMDHKTCTPDAVTFCSLIDGLGKNGRVDDAYKFYEKMLDTDQIPNAILYTSLIRNFFKHGRKEDGHKIYKEMVQ 534 (895)
Q Consensus 455 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 534 (895)
+.+++..+.+.|+.||..+++.++.+|++.|++++|.++|++|. .+|..+|+.++.+|++.|+.++|.++|++|.+
T Consensus 243 ~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~ 318 (697)
T PLN03081 243 GQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRD 318 (697)
T ss_pred HHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 88888888888888888888888888888888888888888774 34777888888888888888888888888888
Q ss_pred cCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhH
Q 002664 535 RGCSPDLMLLNTYMDCVFKAGETEKGRALFEEIKAQGFVPDVQSYSILIHGLVKAGFAHETDQLFYAMKKQGCVLDTRAY 614 (895)
Q Consensus 535 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 614 (895)
.|+.||..+|+.++.+|++.|++++|.+++..+.+.|+.||..+++.|+.+|++.|++++|..+|++|.+ ||..+|
T Consensus 319 ~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~ 394 (697)
T PLN03081 319 SGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISW 394 (697)
T ss_pred cCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeH
Confidence 8888888888888888888888888888888888888888999999999999999999999999988863 688899
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHH-cCCCcCHHHHHHHHHHHHc
Q 002664 615 NTVVDGFCKSGKVNKAYQLLEEMKTKGHYPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKS-KGIELNTVIYSSLIDGFGK 693 (895)
Q Consensus 615 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~~ 693 (895)
+.+|.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|.+.|.+++|.++|+.|.+ .|+.|+..+|+.++++|++
T Consensus 395 n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r 474 (697)
T PLN03081 395 NALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGR 474 (697)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999976 5889999999999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHhHHHHH
Q 002664 694 VGRIDEAYLIMEELMQKGLTPNAYTWNCLLDALVKAEEISEAFVCFQSMKDLKCTPNHVTYSIIINGLCRVRKFNKAFVF 773 (895)
Q Consensus 694 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 773 (895)
.|++++|.++++++ ++.|+..+|++|+.+|...|+++.|..+++++.+.+ +.+..+|..++++|++.|++++|.++
T Consensus 475 ~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~-p~~~~~y~~L~~~y~~~G~~~~A~~v 550 (697)
T PLN03081 475 EGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMG-PEKLNNYVVLLNLYNSSGRQAEAAKV 550 (697)
T ss_pred cCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCC-CCCCcchHHHHHHHHhCCCHHHHHHH
Confidence 99999999988765 577899999999999999999999999999987633 22457899999999999999999999
Q ss_pred HHHHHHCCCCCCH-HHHHHHHH---HHH--------hcCCHHHHHHHHHHHHHCCCCCCHH
Q 002664 774 WQEMQKQGFKPNT-ITYTTMIS---GLA--------KAGNITEANGLFERFKENGGVPDSA 822 (895)
Q Consensus 774 ~~~~~~~~~~p~~-~~~~~l~~---~~~--------~~g~~~~A~~~~~~~~~~~~~p~~~ 822 (895)
+++|.+.|+...+ .+|..+.. .+. ...-++...++..+|.+.|+.|+..
T Consensus 551 ~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~ 611 (697)
T PLN03081 551 VETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEEN 611 (697)
T ss_pred HHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcc
Confidence 9999998875332 23321110 000 0112455667888888899999754
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-48 Score=470.55 Aligned_cols=766 Identities=14% Similarity=0.062 Sum_probs=628.9
Q ss_pred HHHHhhcCChHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 002664 93 IGVLRRLKDVNLAINYFRWVERKTDQAHSLEAYNSLLMVMAVSKNFEPLEEILGEMSLAGIGPTNNTCIELVVSCVKSKM 172 (895)
Q Consensus 93 ~~~l~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~ 172 (895)
...+...++++.|...|+.+.... |.++.++..++.++...|++++|..+++++... .+.+..++..+...+...|+
T Consensus 132 ~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~ 208 (899)
T TIGR02917 132 GLAYLGLGQLELAQKSYEQALAID--PRSLYAKLGLAQLALAENRFDEARALIDEVLTA-DPGNVDALLLKGDLLLSLGN 208 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHhcCC
Confidence 344455678888888888777443 456677888888888888888888888887665 35566777777788888888
Q ss_pred hHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 002664 173 LREAFDIIQTMRKFKFRPAFTAYTTLIGALATVRESNLMLNLFHQMQELGYEVSVHLFTTLIRVFAREGRVDDALFLLDE 252 (895)
Q Consensus 173 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 252 (895)
+++|...|+...+.. +.+..++..++..+...|++++|...++.+.+.. +.+.......+..+...|++++|...|++
T Consensus 209 ~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 286 (899)
T TIGR02917 209 IELALAAYRKAIALR-PNNPAVLLALATILIEAGEFEEAEKHADALLKKA-PNSPLAHYLKALVDFQKKNYEDARETLQD 286 (899)
T ss_pred HHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 888888888877654 4456677777788888888888888888887753 33444555556666778888888888888
Q ss_pred HHhCCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCCH
Q 002664 253 MKNNAFSVDIVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGVAPDDVTYTSMIGVLCKSKRLEEAVAMFEQMDRNREVPCA 332 (895)
Q Consensus 253 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 332 (895)
+.+.+. .+...+..+..++...|++++|...|+++.+.. +.+...+..++..+.+.|++++|...++++....+. +.
T Consensus 287 ~l~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~ 363 (899)
T TIGR02917 287 ALKSAP-EYLPALLLAGASEYQLGNLEQAYQYLNQILKYA-PNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPD-DP 363 (899)
T ss_pred HHHhCC-CchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CH
Confidence 877642 223344456667778888888888888888763 235567777888888889999999988888877654 67
Q ss_pred HhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 002664 333 YAYNTMIMGYGSVGKFDEAFSLFERLKQKGCIPSVIAYNSLLTCLGKKGRVTEAMKIFEAMKKDARPNNTTYNVLIDMLC 412 (895)
Q Consensus 333 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 412 (895)
..+..++..+.+.|++++|.++|+++.+..+ .+...+..+...+...|++++|++.++.+.+..|........++..+.
T Consensus 364 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~ 442 (899)
T TIGR02917 364 AALSLLGEAYLALGDFEKAAEYLAKATELDP-ENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYL 442 (899)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHH
Confidence 7888888888899999999999988887653 356677888888888899999999998888777777778888888889
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhhcCCHHHHHH
Q 002664 413 KAGNFEDALKFRDAMKEAGLFPNVMTVNIMVDRLCKAQKLDEAFSIFEGMDHKTCTPDAVTFCSLIDGLGKNGRVDDAYK 492 (895)
Q Consensus 413 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 492 (895)
+.|++++|..+++++.... +++..++..++..+...|++++|...|+++.+.. +.+...+..++..+...|++++|..
T Consensus 443 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~ 520 (899)
T TIGR02917 443 RSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQ 520 (899)
T ss_pred hcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 9999999999998887653 4567788888999999999999999999988764 3356678888899999999999999
Q ss_pred HHHHHHhCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCC
Q 002664 493 FYEKMLDTDQIPNAILYTSLIRNFFKHGRKEDGHKIYKEMVQRGCSPDLMLLNTYMDCVFKAGETEKGRALFEEIKAQGF 572 (895)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 572 (895)
.|+++++..+ .+..++..++..+...|+.++|...++++...+ +.+...+..++..+...|++++|..+++.+.+..
T Consensus 521 ~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~- 597 (899)
T TIGR02917 521 RFEKVLTIDP-KNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA- 597 (899)
T ss_pred HHHHHHHhCc-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-
Confidence 9999988764 477788889999999999999999999988764 4566777788889999999999999999988764
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHhHHHH
Q 002664 573 VPDVQSYSILIHGLVKAGFAHETDQLFYAMKKQGCVLDTRAYNTVVDGFCKSGKVNKAYQLLEEMKTKGHYPTVVTYGSV 652 (895)
Q Consensus 573 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 652 (895)
+.+...+..++..+...|++++|...++.+.+.. +.+...+..++.++...|++++|...++++.+... .+..++..+
T Consensus 598 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l 675 (899)
T TIGR02917 598 PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKP-DNTEAQIGL 675 (899)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHH
Confidence 4577889999999999999999999999998764 45677888899999999999999999999987643 357788889
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 002664 653 IDGLAKIDRLDEAYMLFEEAKSKGIELNTVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNAYTWNCLLDALVKAEEI 732 (895)
Q Consensus 653 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 732 (895)
+..+...|++++|..+++.+.+.. +.+...+..++..+...|++++|++.|+.+.+.+ |+..++..++.++...|++
T Consensus 676 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~ 752 (899)
T TIGR02917 676 AQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNT 752 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCH
Confidence 999999999999999999998875 5577788888999999999999999999999853 5557777889999999999
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 002664 733 SEAFVCFQSMKDLKCTPNHVTYSIIINGLCRVRKFNKAFVFWQEMQKQGFKPNTITYTTMISGLAKAGNITEANGLFERF 812 (895)
Q Consensus 733 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 812 (895)
++|.+.++++.+.. +.+...+..++..|...|++++|...|+++.+. .+++..++..++..+...|+ .+|+.+++++
T Consensus 753 ~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~ 829 (899)
T TIGR02917 753 AEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK-APDNAVVLNNLAWLYLELKD-PRALEYAEKA 829 (899)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHH
Confidence 99999999999854 556778889999999999999999999999986 35567889999999999999 8899999999
Q ss_pred HHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002664 813 KENGGVP-DSACYNAMMEGLSNANRAMDAYTLFEETRRKGFNIHTKTCVILLDALHKAECLEQAAIVGAVLR 883 (895)
Q Consensus 813 ~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~l~ 883 (895)
.+ ..| ++..+..++.++...|++++|...++++++.+ |.+..++..++.+|.+.|++++|.++.++++
T Consensus 830 ~~--~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 830 LK--LAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIA-PEAAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred Hh--hCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 98 556 67788899999999999999999999999986 6689999999999999999999999888775
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-47 Score=461.77 Aligned_cols=807 Identities=12% Similarity=0.043 Sum_probs=563.5
Q ss_pred HHHHHHHHhhcCCCCchHHHhhhhcCCCCC-h---HHHHHHHhhcCChHHHHHHHHHhhhcCC-----------------
Q 002664 59 VVDDVYNILHAGPWGPAVENALSSLDGMPQ-P---GLVIGVLRRLKDVNLAINYFRWVERKTD----------------- 117 (895)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~---~~~~~~l~~~~~~~~a~~~f~~~~~~~~----------------- 117 (895)
........+.++++..++...-+.+...|. + ..+..++...|+++.|...|+.+....+
T Consensus 25 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~g 104 (899)
T TIGR02917 25 LIEAAKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARAYLLQG 104 (899)
T ss_pred HHHHHHHHHHcCChHhHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChhhhHHHHHHHHHHCC
Confidence 344444455555555443332222222222 1 1245555666777777777766654321
Q ss_pred ----------------CCCCHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHH
Q 002664 118 ----------------QAHSLEAYNSLLMVMAVSKNFEPLEEILGEMSLAGIGPTNNTCIELVVSCVKSKMLREAFDIIQ 181 (895)
Q Consensus 118 ----------------~~~~~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 181 (895)
.+....++..++.++...|++++|...|+++.... +.+..++..++..+...|++++|..+++
T Consensus 105 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~ 183 (899)
T TIGR02917 105 KFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAID-PRSLYAKLGLAQLALAENRFDEARALID 183 (899)
T ss_pred CHHHHHHhhcccccCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHCCCHHHHHHHHH
Confidence 12223344444455555555555555555544432 2233444455555555555555555555
Q ss_pred HHHhCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC
Q 002664 182 TMRKFKFRPAFTAYTTLIGALATVRESNLMLNLFHQMQELGYEVSVHLFTTLIRVFAREGRVDDALFLLDEMKNNAFSVD 261 (895)
Q Consensus 182 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 261 (895)
.+.+.. +.+...+..++..+...|++++|...|+++.+.+ +.+..++..++..+...|++++|...++.+.+.. +.+
T Consensus 184 ~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-~~~ 260 (899)
T TIGR02917 184 EVLTAD-PGNVDALLLKGDLLLSLGNIELALAAYRKAIALR-PNNPAVLLALATILIEAGEFEEAEKHADALLKKA-PNS 260 (899)
T ss_pred HHHHhC-CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCC
Confidence 554432 2334445555555555555555555555555442 2344445555555555555555555555555443 112
Q ss_pred hHhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCCHHhHHHHHHH
Q 002664 262 IVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGVAPDDVTYTSMIGVLCKSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMG 341 (895)
Q Consensus 262 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 341 (895)
...+......+...|++++|...|+++.+.+.. +...+..+...+...|++++|...|+++....+. +..++..++..
T Consensus 261 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~la~~ 338 (899)
T TIGR02917 261 PLAHYLKALVDFQKKNYEDARETLQDALKSAPE-YLPALLLAGASEYQLGNLEQAYQYLNQILKYAPN-SHQARRLLASI 338 (899)
T ss_pred chHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-chhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHH
Confidence 222223333444555555555555555544211 1223344455556666666666666666665443 45566666667
Q ss_pred HHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 002664 342 YGSVGKFDEAFSLFERLKQKGCIPSVIAYNSLLTCLGKKGRVTEAMKIFEAMKKDARPNNTTYNVLIDMLCKAGNFEDAL 421 (895)
Q Consensus 342 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 421 (895)
+...|++++|...++.+.+.+ +.+...+..++..+.+.|++++|.+.|+++....|.+...+..++..+...|++++|.
T Consensus 339 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 417 (899)
T TIGR02917 339 QLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAI 417 (899)
T ss_pred HHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHH
Confidence 777777777777777776654 2355667777777777777777777777777666777777777777777777777777
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCC
Q 002664 422 KFRDAMKEAGLFPNVMTVNIMVDRLCKAQKLDEAFSIFEGMDHKTCTPDAVTFCSLIDGLGKNGRVDDAYKFYEKMLDTD 501 (895)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 501 (895)
+.++++.+... ........++..+.+.|++++|..+++.+... .+++..++..++..+...|++++|...|+++++..
T Consensus 418 ~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 495 (899)
T TIGR02917 418 ADLETAAQLDP-ELGRADLLLILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE 495 (899)
T ss_pred HHHHHHHhhCC-cchhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC
Confidence 77777766532 12334455666777788888888888877765 34467788888888999999999999999988875
Q ss_pred CCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 002664 502 QIPNAILYTSLIRNFFKHGRKEDGHKIYKEMVQRGCSPDLMLLNTYMDCVFKAGETEKGRALFEEIKAQGFVPDVQSYSI 581 (895)
Q Consensus 502 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 581 (895)
+ .+...+..++..+...|++++|.+.++.+.+.+ +.+..++..+...+...|+.++|...++++...+ +.+...+..
T Consensus 496 ~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 572 (899)
T TIGR02917 496 P-DFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALA 572 (899)
T ss_pred C-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHH
Confidence 4 466677888888889999999999999888764 4567778888888888999999999999887764 346677778
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCC
Q 002664 582 LIHGLVKAGFAHETDQLFYAMKKQGCVLDTRAYNTVVDGFCKSGKVNKAYQLLEEMKTKGHYPTVVTYGSVIDGLAKIDR 661 (895)
Q Consensus 582 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 661 (895)
++..+...|++++|..+++.+.+.. +.+...|..++.++...|++++|...++++.+... .+...+..++..+...|+
T Consensus 573 l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~ 650 (899)
T TIGR02917 573 LAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQP-DSALALLLLADAYAVMKN 650 (899)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCC
Confidence 8888999999999999999888764 55678888999999999999999999999887643 356678888888999999
Q ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 002664 662 LDEAYMLFEEAKSKGIELNTVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNAYTWNCLLDALVKAEEISEAFVCFQS 741 (895)
Q Consensus 662 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 741 (895)
+++|...++++.+.. +.+...+..++..+...|++++|..+++.+.+.. +++...+..++..+...|++++|...|++
T Consensus 651 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 728 (899)
T TIGR02917 651 YAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRK 728 (899)
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 999999999988764 4567888889999999999999999999988854 34777888889999999999999999999
Q ss_pred HHhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-C
Q 002664 742 MKDLKCTPNHVTYSIIINGLCRVRKFNKAFVFWQEMQKQGFKPNTITYTTMISGLAKAGNITEANGLFERFKENGGVP-D 820 (895)
Q Consensus 742 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~ 820 (895)
+.+.. |+..++..++.++...|++++|.+.++++.+. .+.+..++..++..|...|++++|.+.|+++++. .| +
T Consensus 729 ~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~ 803 (899)
T TIGR02917 729 ALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKT-HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK--APDN 803 (899)
T ss_pred HHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh--CCCC
Confidence 98854 55577778889999999999999999999875 3556788888999999999999999999999984 44 7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Q 002664 821 SACYNAMMEGLSNANRAMDAYTLFEETRRKGFNIHTKTCVILLDALHKAECLEQAAIVGAVLRETAKS 888 (895)
Q Consensus 821 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 888 (895)
+.++..++..+...|+ .+|+.+++++.... |.+...+..++.++...|++++|....+++.+..+.
T Consensus 804 ~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~ 869 (899)
T TIGR02917 804 AVVLNNLAWLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE 869 (899)
T ss_pred HHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 8889999999999999 88999999998874 677788889999999999999999987777765543
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-30 Score=307.03 Aligned_cols=565 Identities=12% Similarity=0.061 Sum_probs=250.0
Q ss_pred HHHHHhcCChhhHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCC
Q 002664 269 IDCFGKVGKVDMAWKFFHEMKAQGVAPDDV-TYTSMIGVLCKSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGK 347 (895)
Q Consensus 269 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 347 (895)
+..+...|++++|.+.|+.+.+.+ +|+.. ....+.......|+.++|++.|+++....|. +...+..+...+...|+
T Consensus 119 A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~-~~~~~~~LA~ll~~~g~ 196 (1157)
T PRK11447 119 ARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPG-NTGLRNTLALLLFSSGR 196 (1157)
T ss_pred HHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHccCC
Confidence 334555566666666666555432 12211 1111111112345566666666666555543 45555555555656666
Q ss_pred HHHHHHHHHHHHhcCC------------------CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 002664 348 FDEAFSLFERLKQKGC------------------IPS-VIAYNSLLTCLGKKGRVTEAMKIFEAMKKDARPNNTTYNVLI 408 (895)
Q Consensus 348 ~~~A~~~~~~~~~~~~------------------~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 408 (895)
+++|+..++++.+... .+. ...+...+..+-.....+.|...+..................
T Consensus 197 ~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G 276 (1157)
T PRK11447 197 RDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQG 276 (1157)
T ss_pred HHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHH
Confidence 6666666665544311 000 001111111111112233344444433221111111122334
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCC-ChhhH------------H
Q 002664 409 DMLCKAGNFEDALKFRDAMKEAGLFPNVMTVNIMVDRLCKAQKLDEAFSIFEGMDHKTCTP-DAVTF------------C 475 (895)
Q Consensus 409 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~------------~ 475 (895)
..+...|++++|+..|++.+... +.+...+..+...+.+.|++++|+..|++..+..... ....+ .
T Consensus 277 ~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~ 355 (1157)
T PRK11447 277 LAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLI 355 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHH
Confidence 55556666666666666666542 1245556666666666666666666666665543211 11111 1
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcC
Q 002664 476 SLIDGLGKNGRVDDAYKFYEKMLDTDQIPNAILYTSLIRNFFKHGRKEDGHKIYKEMVQRGCSPDLMLLNTYMDCVFKAG 555 (895)
Q Consensus 476 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 555 (895)
.....+.+.|++++|+..|+++++..+ .+..++..++..+...|++++|++.|+++++.. +.+...+..+...+ ..+
T Consensus 356 ~~g~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~-~~~ 432 (1157)
T PRK11447 356 QQGDAALKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLY-RQQ 432 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH-Hhc
Confidence 223445566666666666666666543 344555566666666666666666666666542 22333444444443 234
Q ss_pred ChhHHHHHHHHHHHCCCC--------CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCCh
Q 002664 556 ETEKGRALFEEIKAQGFV--------PDVQSYSILIHGLVKAGFAHETDQLFYAMKKQGCVLDTRAYNTVVDGFCKSGKV 627 (895)
Q Consensus 556 ~~~~a~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 627 (895)
+.++|...++.+...... .....+..+...+...|++++|...+++.++.. +.+...+..+...|.+.|++
T Consensus 433 ~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~ 511 (1157)
T PRK11447 433 SPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQR 511 (1157)
T ss_pred CHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH
Confidence 556666555543221100 001122233444445555555555555555442 22334444455555555555
Q ss_pred HHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHH---------HHHHHHHHHccCCHH
Q 002664 628 NKAYQLLEEMKTKGHYPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNTVI---------YSSLIDGFGKVGRID 698 (895)
Q Consensus 628 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~---------~~~l~~~~~~~g~~~ 698 (895)
++|...++++.+.... +...+..+...+...++.++|...++.+......++... +..++..+...|+.+
T Consensus 512 ~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~ 590 (1157)
T PRK11447 512 SQADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEA 590 (1157)
T ss_pred HHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHH
Confidence 5555555555443211 222232333333444555555555544332211111100 112233344444444
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 002664 699 EAYLIMEELMQKGLTPNAYTWNCLLDALVKAEEISEAFVCFQSMKDLKCTPNHVTYSIIINGLCRVRKFNKAFVFWQEMQ 778 (895)
Q Consensus 699 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 778 (895)
+|+.+++. .+++...+..++..+.+.|++++|+..|+++++.. +.+...+..++.+|...|++++|++.++.+.
T Consensus 591 eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll 664 (1157)
T PRK11447 591 EAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLP 664 (1157)
T ss_pred HHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 44444431 12233334444444444444444444444444422 2233344444444444444444444444444
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002664 779 KQGFKPNTITYTTMISGLAKAGNITEANGLFERFKENGG--VP---DSACYNAMMEGLSNANRAMDAYTLFEETR 848 (895)
Q Consensus 779 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 848 (895)
+. .+.+..++..+..++...|++++|.+++++++.... .| +...+..++..+...|++++|+..|++++
T Consensus 665 ~~-~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al 738 (1157)
T PRK11447 665 AT-ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAM 738 (1157)
T ss_pred cc-CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 31 111223334444444444444444444444443210 01 11233334444444444444444444443
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-30 Score=308.26 Aligned_cols=643 Identities=12% Similarity=0.081 Sum_probs=437.6
Q ss_pred HHHhhcCChHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCCChhh--------------
Q 002664 94 GVLRRLKDVNLAINYFRWVERKTDQAHSLEAYNSLLMVMAVSKNFEPLEEILGEMSLAGIGPTNNT-------------- 159 (895)
Q Consensus 94 ~~l~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~-------------- 159 (895)
++-...++++.|.+.+..+... .|.+++++..+++++.+.|+.++|.+.+++..+.. |.+..+
T Consensus 36 ~~~~~~~~~d~a~~~l~kl~~~--~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~-P~~~~~~~~~~~~~~~~~~~ 112 (1157)
T PRK11447 36 RLGEATHREDLVRQSLYRLELI--DPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA-PDSNAYRSSRTTMLLSTPEG 112 (1157)
T ss_pred HHHHhhCChHHHHHHHHHHHcc--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHhcCCch
Confidence 3344568999999999988854 46789999999999999999999999999998864 333222
Q ss_pred --HHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHH
Q 002664 160 --CIELVVSCVKSKMLREAFDIIQTMRKFKFRPAFTAYTTLIGALATVRESNLMLNLFHQMQELGYEVSVHLFTTLIRVF 237 (895)
Q Consensus 160 --~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 237 (895)
...+...+.+.|++++|...|+.+.+...+........+.......|+.++|+..++++.+.. +.+......++..+
T Consensus 113 ~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll 191 (1157)
T PRK11447 113 RQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLL 191 (1157)
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 234455688999999999999999876422222222222222334689999999999999874 55778889999999
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCC--hHh-----------------HHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHH
Q 002664 238 AREGRVDDALFLLDEMKNNAFSVD--IVL-----------------YNVCIDCFGKVGKVDMAWKFFHEMKAQGVAPDDV 298 (895)
Q Consensus 238 ~~~g~~~~A~~~~~~~~~~~~~~~--~~~-----------------~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 298 (895)
...|++++|+..|+++.+...... ... +...+..+-.....+.|...+.++......|+..
T Consensus 192 ~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~ 271 (1157)
T PRK11447 192 FSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFR 271 (1157)
T ss_pred HccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchH
Confidence 999999999999999876421100 001 1111111111222345555555554432233322
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCC-HHHH-------
Q 002664 299 TYTSMIGVLCKSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLFERLKQKGCIPS-VIAY------- 370 (895)
Q Consensus 299 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~------- 370 (895)
...+...+...|++++|+..|++.++..+. +..++..++..|.+.|++++|+..|+++.+...... ...+
T Consensus 272 -~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~ 349 (1157)
T PRK11447 272 -ARAQGLAAVDSGQGGKAIPELQQAVRANPK-DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVN 349 (1157)
T ss_pred -HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhh
Confidence 224466778899999999999999988765 788999999999999999999999999988653321 1111
Q ss_pred -----HHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 002664 371 -----NSLLTCLGKKGRVTEAMKIFEAMKKDARPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEAGLFPNVMTVNIMVDR 445 (895)
Q Consensus 371 -----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 445 (895)
......+.+.|++++|+..|+++....|.+..++..++.++...|++++|++.|+++.+.. +.+...+..+...
T Consensus 350 ~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l 428 (1157)
T PRK11447 350 RYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANL 428 (1157)
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 2234567789999999999999998888899999999999999999999999999998753 2234555556666
Q ss_pred HHhcCChhHHHHHHHHhhhCCCC--------CChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcchhhHHHHHHHHH
Q 002664 446 LCKAQKLDEAFSIFEGMDHKTCT--------PDAVTFCSLIDGLGKNGRVDDAYKFYEKMLDTDQIPNAILYTSLIRNFF 517 (895)
Q Consensus 446 ~~~~g~~~~A~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 517 (895)
+ ..++.++|..+++.+...... .....+..++..+...|++++|+..|+++++..+ .+...+..++..+.
T Consensus 429 ~-~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P-~~~~~~~~LA~~~~ 506 (1157)
T PRK11447 429 Y-RQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDP-GSVWLTYRLAQDLR 506 (1157)
T ss_pred H-HhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH
Confidence 5 456789998888765433100 0122345567778888899999999998888765 36777888888888
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 002664 518 KHGRKEDGHKIYKEMVQRGCSPDLMLLNTYMDCVFKAGETEKGRALFEEIKAQGFVPDVQSYSILIHGLVKAGFAHETDQ 597 (895)
Q Consensus 518 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 597 (895)
+.|++++|...++++++.. +.+...+..+...+...++.++|...++.+......++.....
T Consensus 507 ~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~----------------- 568 (1157)
T PRK11447 507 QAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELA----------------- 568 (1157)
T ss_pred HcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHH-----------------
Confidence 8999999999888887753 3344445555556667788888888887654332111111100
Q ss_pred HHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCC
Q 002664 598 LFYAMKKQGCVLDTRAYNTVVDGFCKSGKVNKAYQLLEEMKTKGHYPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGI 677 (895)
Q Consensus 598 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 677 (895)
..+ ....+..++..+...|++++|.++++. .+++...+..+...+.+.|++++|+..|+++.+..
T Consensus 569 --~~l-------~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~- 633 (1157)
T PRK11447 569 --QRL-------QSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE- 633 (1157)
T ss_pred --HHH-------hhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 000 001122345556667777777776661 12344455666677777777777777777777653
Q ss_pred CcCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CC---CHH
Q 002664 678 ELNTVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNAYTWNCLLDALVKAEEISEAFVCFQSMKDLKC--TP---NHV 752 (895)
Q Consensus 678 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~p---~~~ 752 (895)
+.+...+..++..|...|++++|++.++.+.+.. +.+..++..++.++...|++++|.+++++++.... +| +..
T Consensus 634 P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~ 712 (1157)
T PRK11447 634 PGNADARLGLIEVDIAQGDLAAARAQLAKLPATA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESAL 712 (1157)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHH
Confidence 3456667777777777777777777777666531 12455556666777777777777777777765321 11 113
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 002664 753 TYSIIINGLCRVRKFNKAFVFWQEMQK 779 (895)
Q Consensus 753 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 779 (895)
.+..+...+...|++++|+..|++...
T Consensus 713 ~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 713 VLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 444556667777777777777776653
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-26 Score=260.65 Aligned_cols=658 Identities=10% Similarity=0.024 Sum_probs=404.0
Q ss_pred hcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHH
Q 002664 169 KSKMLREAFDIIQTMRKFKFRPAFTAYTTLIGALATVRESNLMLNLFHQMQELGYEVSVHLFTTLIRVFAREGRVDDALF 248 (895)
Q Consensus 169 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 248 (895)
..|++++|+..|+...+.. +-+..++..+...|...|++++|+...++..+.. +.+...+..+.. .+++++|..
T Consensus 56 ~~Gd~~~A~~~l~~Al~~d-P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld-P~n~~~~~~La~----i~~~~kA~~ 129 (987)
T PRK09782 56 KNNDEATAIREFEYIHQQV-PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH-PGDARLERSLAA----IPVEVKSVT 129 (987)
T ss_pred hCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-cccHHHHHHHHH----hccChhHHH
Confidence 3477777777777777664 2336666777777777777777777777777653 223333333322 277777777
Q ss_pred HHHHHHhCCCCCChHhHHHHHHH--------HHhcCChhhHHHHHHHHHHCCCCCCHHHHHHH-HHHHHhcCCHhHHHHH
Q 002664 249 LLDEMKNNAFSVDIVLYNVCIDC--------FGKVGKVDMAWKFFHEMKAQGVAPDDVTYTSM-IGVLCKSKRLEEAVAM 319 (895)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~l~~~--------~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l-~~~~~~~g~~~~A~~~ 319 (895)
+++++.+.. +-+..++..+... |.+. ++|.+.++ .......|+..+.... ...|.+.|++++|++.
T Consensus 130 ~ye~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~l 204 (987)
T PRK09782 130 TVEELLAQQ-KACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTL 204 (987)
T ss_pred HHHHHHHhC-CCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHH
Confidence 777777664 3334444444443 4333 44444444 3333333344433333 6777777777777777
Q ss_pred HHHHhhCCCCCCHHhHHHHHHHHHc-cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCC-
Q 002664 320 FEQMDRNREVPCAYAYNTMIMGYGS-VGKFDEAFSLFERLKQKGCIPSVIAYNSLLTCLGKKGRVTEAMKIFEAMKKDA- 397 (895)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 397 (895)
+.++.+.++. +......|..+|.. .++ +.+..++... ...+...+..++..|.+.|+.++|.++++++....
T Consensus 205 L~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~~----lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~ 278 (987)
T PRK09782 205 YNEARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQG----IFTDPQSRITYATALAYRGEKARLQHYLIENKPLFT 278 (987)
T ss_pred HHHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhchh----cccCHHHHHHHHHHHHHCCCHHHHHHHHHhCccccc
Confidence 7777777654 45556666666666 355 6666664432 22366677777777777777777777777765422
Q ss_pred -CCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHHHCCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhH
Q 002664 398 -RPNNTTYNVLIDMLCKAGNFE-DALKFRDAMKEAGLFPNV-MTVNIMVDRLCKAQKLDEAFSIFEGMDHKTCTPDAVTF 474 (895)
Q Consensus 398 -~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 474 (895)
.|...+|..+ +.+.+... .|..-|.+ . ..++. .....++..+.+.++++.+.++.. +.|.....
T Consensus 279 ~~~~~~~~~~~---l~r~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~ 345 (987)
T PRK09782 279 TDAQEKSWLYL---LSKYSANPVQALANYTV--Q--FADNRQYVVGATLPVLLKEGQYDAAQKLLA------TLPANEML 345 (987)
T ss_pred CCCccHHHHHH---HHhccCchhhhccchhh--h--hHHHHHHHHHHHHHHHHhccHHHHHHHHhc------CCCcchHH
Confidence 2223333322 22333322 11111111 0 01111 112223566677777775555522 22222222
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-C-CCCCHhhHHHHHHHHH
Q 002664 475 CSLIDGLGKNGRVDDAYKFYEKMLDTDQIPNAILYTSLIRNFFKHGRKEDGHKIYKEMVQR-G-CSPDLMLLNTYMDCVF 552 (895)
Q Consensus 475 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~-~~~~~~~~~~l~~~~~ 552 (895)
..-..+....+...++...+..+.+..+ .+......+.....+.|+.++|..+|+..... + -..+......++..|.
T Consensus 346 ~~r~~~~~~~~~~~~~~~~~~~~y~~~~-~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 424 (987)
T PRK09782 346 EERYAVSVATRNKAEALRLARLLYQQEP-ANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLE 424 (987)
T ss_pred HHHHhhccccCchhHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHH
Confidence 1111122234566666666666666532 35556666666777777788888877777652 1 1123334446666676
Q ss_pred HcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH---HHHHHHHHHcCCCC--CHHhHHHHHHHHHccCCh
Q 002664 553 KAGETEKGRALFEEIKAQGFVPDVQSYSILIHGLVKAGFAHET---DQLFYAMKKQGCVL--DTRAYNTVVDGFCKSGKV 627 (895)
Q Consensus 553 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A---~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~ 627 (895)
+.+......++..-.. +++...- +.-.|+..++ ...+..+.... ++ +...|..+..++.. ++.
T Consensus 425 ~~~~~~~~~~~~~l~~----~~~~~~~------~~~~~~~~~~~~~~~~~~~al~~~-p~~~~~~a~~~LG~~l~~-~~~ 492 (987)
T PRK09782 425 SHPYLATPAKVAILSK----PLPLAEQ------RQWQSQLPGIADNCPAIVRLLGDM-SPSYDAAAWNRLAKCYRD-TLP 492 (987)
T ss_pred hCCcccchHHHHHhcc----ccccchh------HHHHhhhhhhhhhHHHHHHhcccC-CCCCCHHHHHHHHHHHHh-CCc
Confidence 6666333332221111 1111111 1112233222 22333333321 34 56777788877776 788
Q ss_pred HHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 002664 628 NKAYQLLEEMKTKGHYPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNTVIYSSLIDGFGKVGRIDEAYLIMEEL 707 (895)
Q Consensus 628 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 707 (895)
++|+..+.+.... .|+......+...+...|++++|...|+++... +|+...+..++..+.+.|++++|...++.+
T Consensus 493 ~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qA 568 (987)
T PRK09782 493 GVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQA 568 (987)
T ss_pred HHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 8899888877765 355444444455556889999999999887654 344455666777888889999999999998
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-CH
Q 002664 708 MQKGLTPNAYTWNCLLDALVKAEEISEAFVCFQSMKDLKCTPNHVTYSIIINGLCRVRKFNKAFVFWQEMQKQGFKP-NT 786 (895)
Q Consensus 708 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~ 786 (895)
++.. +++...+..+.......|++++|...+++.++. .|+...|..+..++.+.|++++|+..+++..+. .| +.
T Consensus 569 L~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l--~Pd~~ 643 (987)
T PRK09782 569 EQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALEL--EPNNS 643 (987)
T ss_pred HhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCH
Confidence 8853 223334444444555669999999999999884 467778888888999999999999999998874 44 46
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 002664 787 ITYTTMISGLAKAGNITEANGLFERFKENGGVP-DSACYNAMMEGLSNANRAMDAYTLFEETRRKGFNIHTKTCVILLDA 865 (895)
Q Consensus 787 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 865 (895)
..+..+..++...|++++|+..++++++ ..| ++..+..++.++...|++++|+..++++++.. |....+....+..
T Consensus 644 ~a~~nLG~aL~~~G~~eeAi~~l~~AL~--l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~-P~~a~i~~~~g~~ 720 (987)
T PRK09782 644 NYQAALGYALWDSGDIAQSREMLERAHK--GLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI-DNQALITPLTPEQ 720 (987)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCchhhhhhhHH
Confidence 6788888888999999999999999988 667 68888899999999999999999999998874 5566777778888
Q ss_pred HHhcCCHHHHHHHHHH
Q 002664 866 LHKAECLEQAAIVGAV 881 (895)
Q Consensus 866 ~~~~g~~~~A~~~~~~ 881 (895)
..+..+++.|.+-.++
T Consensus 721 ~~~~~~~~~a~~~~~r 736 (987)
T PRK09782 721 NQQRFNFRRLHEEVGR 736 (987)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888888887764443
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-26 Score=257.39 Aligned_cols=682 Identities=10% Similarity=-0.019 Sum_probs=389.2
Q ss_pred CCcchHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCChhHHHHHH
Q 002664 136 KNFEPLEEILGEMSLAGIGPTNNTCIELVVSCVKSKMLREAFDIIQTMRKFKFRPAFTAYTTLIGALATVRESNLMLNLF 215 (895)
Q Consensus 136 ~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 215 (895)
|++++|...|++..+.. |.+..++..|...|.+.|+.++|...+++..+.. |+...+..++..+ +++++|..+|
T Consensus 58 Gd~~~A~~~l~~Al~~d-P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld--P~n~~~~~~La~i---~~~~kA~~~y 131 (987)
T PRK09782 58 NDEATAIREFEYIHQQV-PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH--PGDARLERSLAAI---PVEVKSVTTV 131 (987)
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHHHHHHHh---ccChhHHHHH
Confidence 45555555555544432 2224444455555555555555555555554442 2222222222111 6666666666
Q ss_pred HHHHHcCCCcCHHHHHHHHHH--------HHhcCChhHHHHHHHHHHhCCCCCChHhHH-HHHHHHHhcCChhhHHHHHH
Q 002664 216 HQMQELGYEVSVHLFTTLIRV--------FAREGRVDDALFLLDEMKNNAFSVDIVLYN-VCIDCFGKVGKVDMAWKFFH 286 (895)
Q Consensus 216 ~~~~~~~~~~~~~~~~~l~~~--------~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~ 286 (895)
+++.... +-+..++..++.. |.+. ++|...++ .......|+..+.. .+..+|.+.|++++|++++.
T Consensus 132 e~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~ 206 (987)
T PRK09782 132 EELLAQQ-KACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYN 206 (987)
T ss_pred HHHHHhC-CCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 6666652 3344555555544 3333 44444443 22222233333333 33667777777777777777
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHh-cCCHhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhcCCC-
Q 002664 287 EMKAQGVAPDDVTYTSMIGVLCK-SKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLFERLKQKGCI- 364 (895)
Q Consensus 287 ~~~~~g~~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~- 364 (895)
++.+.+.. +......|..+|.. .++ +++..+++..++ .+...+..++..|.+.|+.++|.+++.++......
T Consensus 207 ~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk----~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~ 280 (987)
T PRK09782 207 EARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQGIF----TDPQSRITYATALAYRGEKARLQHYLIENKPLFTTD 280 (987)
T ss_pred HHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhchhcc----cCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCC
Confidence 77766433 34445556566665 355 666666443222 35666667777777777777777777766543222
Q ss_pred CCHHHHHHHHHHHHhcCCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHH
Q 002664 365 PSVIAYNSLLTCLGKKGRVT-EAMKIFEAMKKDARPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEAGLFPNVMTVNIMV 443 (895)
Q Consensus 365 ~~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 443 (895)
|+..++..+ +.+.+... .|..-|.+ +..+.-......++..+.+.++++.+.++.. +.|.......-.
T Consensus 281 ~~~~~~~~~---l~r~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~r~ 349 (987)
T PRK09782 281 AQEKSWLYL---LSKYSANPVQALANYTV--QFADNRQYVVGATLPVLLKEGQYDAAQKLLA------TLPANEMLEERY 349 (987)
T ss_pred CccHHHHHH---HHhccCchhhhccchhh--hhHHHHHHHHHHHHHHHHhccHHHHHHHHhc------CCCcchHHHHHH
Confidence 333333332 22333221 11111111 1111122234445677777777775554421 223222211111
Q ss_pred HHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCC--CCcchhhHHHHHHHHHhcCC
Q 002664 444 DRLCKAQKLDEAFSIFEGMDHKTCTPDAVTFCSLIDGLGKNGRVDDAYKFYEKMLDTD--QIPNAILYTSLIRNFFKHGR 521 (895)
Q Consensus 444 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~ 521 (895)
.+....+...++...+..|.... +-+......+.-...+.|+.++|.++|+...... ...+......++..|.+.+.
T Consensus 350 ~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 428 (987)
T PRK09782 350 AVSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPY 428 (987)
T ss_pred hhccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCc
Confidence 11223355666666666665542 2255555556666677788888888888876631 11233344567777777766
Q ss_pred HHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhHHH---HHHHHHHHCCCCC--CHHHHHHHHHHHHhcCChHHHH
Q 002664 522 KEDGHKIYKEMVQRGCSPDLMLLNTYMDCVFKAGETEKGR---ALFEEIKAQGFVP--DVQSYSILIHGLVKAGFAHETD 596 (895)
Q Consensus 522 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~---~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~ 596 (895)
.....+...-. .+.+...- +.-.|+..++. ..+..+.... ++ +...+..+..++.. ++..+|.
T Consensus 429 ~~~~~~~~~l~----~~~~~~~~------~~~~~~~~~~~~~~~~~~~al~~~-p~~~~~~a~~~LG~~l~~-~~~~eAi 496 (987)
T PRK09782 429 LATPAKVAILS----KPLPLAEQ------RQWQSQLPGIADNCPAIVRLLGDM-SPSYDAAAWNRLAKCYRD-TLPGVAL 496 (987)
T ss_pred ccchHHHHHhc----cccccchh------HHHHhhhhhhhhhHHHHHHhcccC-CCCCCHHHHHHHHHHHHh-CCcHHHH
Confidence 33333222111 11111111 11123333333 2333333221 23 56667777777766 7777788
Q ss_pred HHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 002664 597 QLFYAMKKQGCVLDTRAYNTVVDGFCKSGKVNKAYQLLEEMKTKGHYPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKG 676 (895)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 676 (895)
..+.+.... .|+......+...+...|++++|...++++... .|+...+..+..++.+.|++++|...++++++.+
T Consensus 497 ~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~ 572 (987)
T PRK09782 497 YAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG 572 (987)
T ss_pred HHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 877777665 355444444455556788888888888887654 3344455566777788888888888888888764
Q ss_pred CCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHH
Q 002664 677 IELNTVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNAYTWNCLLDALVKAEEISEAFVCFQSMKDLKCTPNHVTYSI 756 (895)
Q Consensus 677 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 756 (895)
+.....+..+.......|++++|...+++.++ ..|+...+..++.++.+.|++++|+..+++.+... +.+...++.
T Consensus 573 -P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~n 648 (987)
T PRK09782 573 -LGDNALYWWLHAQRYIPGQPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAA 648 (987)
T ss_pred -CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 33333444444445556888888888888887 44667778888888888888888888888888744 334566777
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcC
Q 002664 757 IINGLCRVRKFNKAFVFWQEMQKQGFKPNTITYTTMISGLAKAGNITEANGLFERFKENGGVP-DSACYNAMMEGLSNAN 835 (895)
Q Consensus 757 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g 835 (895)
+..++...|++++|++.+++..+. .+-+...+..+..++...|++++|+..++++++ ..| +..+....++...+..
T Consensus 649 LG~aL~~~G~~eeAi~~l~~AL~l-~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~--l~P~~a~i~~~~g~~~~~~~ 725 (987)
T PRK09782 649 LGYALWDSGDIAQSREMLERAHKG-LPDDPALIRQLAYVNQRLDDMAATQHYARLVID--DIDNQALITPLTPEQNQQRF 725 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCCchhhhhhhHHHHHHH
Confidence 888888888888888888888874 233467788888888888888888888888887 667 4566667777777777
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC
Q 002664 836 RAMDAYTLFEETRRKGFNIHTKTCVILLDALHKAEC 871 (895)
Q Consensus 836 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 871 (895)
+++.|.+-++..... .++..+....+.++...++
T Consensus 726 ~~~~a~~~~~r~~~~--~~~~~a~~~~g~~~~~~~~ 759 (987)
T PRK09782 726 NFRRLHEEVGRRWTF--SFDSSIGLRSGAMSTANNN 759 (987)
T ss_pred HHHHHHHHHHHHhhc--CccchhccccchHhhhccc
Confidence 888888877776654 3443344445555544433
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.1e-25 Score=235.36 Aligned_cols=688 Identities=14% Similarity=0.093 Sum_probs=327.2
Q ss_pred HHHHHHHHHHHHccCCcchHHHHHHHHHHc-CC---CCCh---hhHHHHHHHHHhcC-----------ChHHHHHHHHHH
Q 002664 122 LEAYNSLLMVMAVSKNFEPLEEILGEMSLA-GI---GPTN---NTCIELVVSCVKSK-----------MLREAFDIIQTM 183 (895)
Q Consensus 122 ~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~-~~---~~~~---~~~~~l~~~~~~~~-----------~~~~A~~~~~~~ 183 (895)
.++|..++..|..+|+++++..+++.-... +. .+.. .+++.|...++..+ ....|..+|+..
T Consensus 41 le~wi~~AleYy~~gk~eefi~iLE~g~~~~~~~y~d~~~~~~~a~~~laay~s~~a~kek~~~~k~e~~~~at~~~~~A 120 (1018)
T KOG2002|consen 41 LEAWIEIALEYYKQGKTEEFIKILESGLIDANEEYADVKSDQMKALDILAAYYSQLAMKEKKKDEKDELFDKATLLFDLA 120 (1018)
T ss_pred hhHHHHHHHHHHhcccHHHHHHHHHhhhhcccchhcchHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhhHH
Confidence 478999999999999999999999876521 10 1111 12233333232111 122333334333
Q ss_pred HhCCCCcCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC--CCC
Q 002664 184 RKFKFRPAFT-AYTTLIGALATVRESNLMLNLFHQMQELGYEVSVHLFTTLIRVFAREGRVDDALFLLDEMKNNA--FSV 260 (895)
Q Consensus 184 ~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~ 260 (895)
.+.....+.. ........+......+.|...|..+.... +++...+..-+......|+|..|+.+|..++... ..+
T Consensus 121 ~ki~m~~~~~l~~~~~~~l~~~~~~~~~A~a~F~~Vl~~s-p~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~a 199 (1018)
T KOG2002|consen 121 DKIDMYEDSHLLVQRGFLLLEGDKSMDDADAQFHFVLKQS-PDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKA 199 (1018)
T ss_pred HHhhccCcchhhhhhhhhhhcCCccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCC
Confidence 3222111111 11111111111112356666666665542 3444444444444555566666666666655433 223
Q ss_pred ChHhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCC-HHHHHHHHHHHH---hcCCHhHHHHHHHHHhhCCCCCCHHhHH
Q 002664 261 DIVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGVAPD-DVTYTSMIGVLC---KSKRLEEAVAMFEQMDRNREVPCAYAYN 336 (895)
Q Consensus 261 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~---~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 336 (895)
|+.+ .+..++.+.|+.+.|...|.++.+. .|+ +.++..|...-. ....+..+..++...-..++. ++.+.+
T Consensus 200 D~rI--gig~Cf~kl~~~~~a~~a~~ralqL--dp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~-nP~~l~ 274 (1018)
T KOG2002|consen 200 DVRI--GIGHCFWKLGMSEKALLAFERALQL--DPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNE-NPVALN 274 (1018)
T ss_pred Cccc--hhhhHHHhccchhhHHHHHHHHHhc--ChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCC-CcHHHH
Confidence 3322 3445556666666666666666654 222 222222222211 122344555555555544443 555666
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHh
Q 002664 337 TMIMGYGSVGKFDEAFSLFERLKQKGCIP--SVIAYNSLLTCLGKKGRVTEAMKIFEAMKKDARPN-NTTYNVLIDMLCK 413 (895)
Q Consensus 337 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~ 413 (895)
.|..-|.-.|++..+..+...+....... -...|..++++|-..|++++|...|.+..+..+.+ ...+..+++.+.+
T Consensus 275 ~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~ 354 (1018)
T KOG2002|consen 275 HLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIK 354 (1018)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHH
Confidence 66666666666666666666555542110 12235556666666666666666666655555444 4455556666666
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC----ChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhhcCCHHH
Q 002664 414 AGNFEDALKFRDAMKEAGLFPNVMTVNIMVDRLCKAQ----KLDEAFSIFEGMDHKTCTPDAVTFCSLIDGLGKNGRVDD 489 (895)
Q Consensus 414 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 489 (895)
.|+++.+...|+++.+.. +.+..+...+...|...+ ..+.|..++.+..+.. +.|...|..+...+....-+.
T Consensus 355 ~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~- 431 (1018)
T KOG2002|consen 355 RGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWA- 431 (1018)
T ss_pred hchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHH-
Confidence 666666666666665542 223344444444444443 3445555555554442 234555555555544433222
Q ss_pred HHHHHHHHH----hCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCCHhhHHHHHHHHHHcCChhHHHH
Q 002664 490 AYKFYEKML----DTDQIPNAILYTSLIRNFFKHGRKEDGHKIYKEMVQR---GCSPDLMLLNTYMDCVFKAGETEKGRA 562 (895)
Q Consensus 490 A~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~ 562 (895)
++..|..++ ..+..+.+...+.++..++..|.+++|...|...... ...+|..
T Consensus 432 sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~-------------------- 491 (1018)
T KOG2002|consen 432 SLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEG-------------------- 491 (1018)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCcccc--------------------
Confidence 244444433 2232344455555555555555555555555555443 1111110
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCC
Q 002664 563 LFEEIKAQGFVPDVQSYSILIHGLVKAGFAHETDQLFYAMKKQGCVLDTRAYNTVVDGFCKSGKVNKAYQLLEEMKTKGH 642 (895)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 642 (895)
-.++..+-..+...+...++.+.|.+.|..+++.. +.-...|..++......++..+|...+......+
T Consensus 492 ---------~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d- 560 (1018)
T KOG2002|consen 492 ---------KSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNID- 560 (1018)
T ss_pred ---------ccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-
Confidence 00111111223333333444444444444444431 1112222222212222334444444444444332
Q ss_pred CCCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcC-CCcCHHHHHHHHHHHH------------ccCCHHHHHHHHHHHHH
Q 002664 643 YPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKG-IELNTVIYSSLIDGFG------------KVGRIDEAYLIMEELMQ 709 (895)
Q Consensus 643 ~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~------------~~g~~~~A~~~~~~~~~ 709 (895)
..++..++.+...+.+...+..|.+-|..+.+.- ..+|+....+|++.|. ..+..++|+++|.++++
T Consensus 561 ~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~ 640 (1018)
T KOG2002|consen 561 SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR 640 (1018)
T ss_pred cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh
Confidence 1233334444444444444444444444333321 1123333333333222 12345556666666665
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHC-CCCCCHHH
Q 002664 710 KGLTPNAYTWNCLLDALVKAEEISEAFVCFQSMKDLKCTPNHVTYSIIINGLCRVRKFNKAFVFWQEMQKQ-GFKPNTIT 788 (895)
Q Consensus 710 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~ 788 (895)
.. +-|..+-|.++.+++..|++.+|..+|.++.+.. .....+|-.++.+|...|+|..|+++|+...+. .-..+..+
T Consensus 641 ~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~v 718 (1018)
T KOG2002|consen 641 ND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEV 718 (1018)
T ss_pred cC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHH
Confidence 32 1155555666666666666666666666666532 123334555666666666666666666655554 22334555
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHH-------------------HHhcCCHHHHHHHHHHHH
Q 002664 789 YTTMISGLAKAGNITEANGLFERFKENGGVP-DSACYNAMMEG-------------------LSNANRAMDAYTLFEETR 848 (895)
Q Consensus 789 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~-------------------~~~~g~~~~A~~~~~~~~ 848 (895)
...|.+++.+.|.+.+|.+.+..+.. ..| ++.....++-+ ....+..+.|.++|.++-
T Consensus 719 l~~Lara~y~~~~~~eak~~ll~a~~--~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls 796 (1018)
T KOG2002|consen 719 LHYLARAWYEAGKLQEAKEALLKARH--LAPSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELS 796 (1018)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHH--hCCccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666666666666666655555 333 22222222211 222345678888888887
Q ss_pred HCCCC
Q 002664 849 RKGFN 853 (895)
Q Consensus 849 ~~~~~ 853 (895)
..+.+
T Consensus 797 ~~~d~ 801 (1018)
T KOG2002|consen 797 KNGDK 801 (1018)
T ss_pred hcCCC
Confidence 77544
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5e-25 Score=232.49 Aligned_cols=581 Identities=13% Similarity=0.059 Sum_probs=372.4
Q ss_pred hhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHH
Q 002664 278 VDMAWKFFHEMKAQGVAPDDVTYTSMIGVLCKSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLFER 357 (895)
Q Consensus 278 ~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 357 (895)
++.|...|....+.. ++|...+..-.......|+|-.|+.+|..++...+..-......++.++.+.|+.+.|+..|.+
T Consensus 146 ~~~A~a~F~~Vl~~s-p~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~r 224 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQS-PDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFER 224 (1018)
T ss_pred HHHHHHHHHHHHhhC-CcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHH
Confidence 355666666555542 2233333333334445566666666666655544332233333444555566666666666666
Q ss_pred HHhcCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 002664 358 LKQKGCIPSVIAYNSLLTCLGKKG---RVTEAMKIFEAMKKDARPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEAGLFP 434 (895)
Q Consensus 358 ~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 434 (895)
+.+.++ .++.++..|...-.... .+..+..++...-...+.|+.+.+.|...|.-.|+++.+..+...+.......
T Consensus 225 alqLdp-~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~ 303 (1018)
T KOG2002|consen 225 ALQLDP-TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENK 303 (1018)
T ss_pred HHhcCh-hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhh
Confidence 666542 13333333333322222 24445555555555566666666666666666666666666666665432110
Q ss_pred --ChhhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcchhhHHHH
Q 002664 435 --NVMTVNIMVDRLCKAQKLDEAFSIFEGMDHKTCTPDAVTFCSLIDGLGKNGRVDDAYKFYEKMLDTDQIPNAILYTSL 512 (895)
Q Consensus 435 --~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 512 (895)
-...|..+.++|...|++++|...|.+..+.........+..+++.+.+.|+++.+...|+++....+ .+..+...|
T Consensus 304 ~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p-~~~etm~iL 382 (1018)
T KOG2002|consen 304 SIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLP-NNYETMKIL 382 (1018)
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCc-chHHHHHHH
Confidence 11235556666666666666666666655543221133445566666666677776666666666543 355555566
Q ss_pred HHHHHhcC----CHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHH----HCCCCCCHHHHHHHHH
Q 002664 513 IRNFFKHG----RKEDGHKIYKEMVQRGCSPDLMLLNTYMDCVFKAGETEKGRALFEEIK----AQGFVPDVQSYSILIH 584 (895)
Q Consensus 513 ~~~~~~~~----~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~ 584 (895)
+..|...+ ..+.|..++...++.. +.|...|..+...+. .++...++..|..+. ..+-.+.+...|.+..
T Consensus 383 G~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e-~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvas 460 (1018)
T KOG2002|consen 383 GCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLE-QTDPWASLDAYGNALDILESKGKQIPPEVLNNVAS 460 (1018)
T ss_pred HhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHH-hcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHH
Confidence 66555553 3455555555555432 334444544444333 333333355554433 2333456666777777
Q ss_pred HHHhcCChHHHHHHHHHHHHc---CCCCCH------HhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCH-HhHHHHHH
Q 002664 585 GLVKAGFAHETDQLFYAMKKQ---GCVLDT------RAYNTVVDGFCKSGKVNKAYQLLEEMKTKGHYPTV-VTYGSVID 654 (895)
Q Consensus 585 ~~~~~g~~~~A~~~~~~~~~~---~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~ 654 (895)
.....|.+++|...|...... ...++. .+-..+....-..++.+.|.+.+..+.+. .|.- ..|..++.
T Consensus 461 lhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ 538 (1018)
T KOG2002|consen 461 LHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGC 538 (1018)
T ss_pred HHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhH
Confidence 777777777777777766554 111222 22334556666788999999999999987 3443 34555544
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHh-----
Q 002664 655 GLAKIDRLDEAYMLFEEAKSKGIELNTVIYSSLIDGFGKVGRIDEAYLIMEELMQKG-LTPNAYTWNCLLDALVK----- 728 (895)
Q Consensus 655 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~~~~----- 728 (895)
.....+...+|...++.+...+ ..++..++-++..+.+...+..|.+-|+...+.- -.+|+++..+|++.|..
T Consensus 539 ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~ 617 (1018)
T KOG2002|consen 539 MARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNP 617 (1018)
T ss_pred HHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhccc
Confidence 4445678899999999998865 5677888888889999889999999887777632 23688888888887653
Q ss_pred -------cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 002664 729 -------AEEISEAFVCFQSMKDLKCTPNHVTYSIIINGLCRVRKFNKAFVFWQEMQKQGFKPNTITYTTMISGLAKAGN 801 (895)
Q Consensus 729 -------~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 801 (895)
.+..++|+++|.++++.. |.|.+.-|-++-+++..|++.+|..+|.+..+.. .....+|..+.++|..+|+
T Consensus 618 ~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~q 695 (1018)
T KOG2002|consen 618 SRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQ 695 (1018)
T ss_pred ccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHH
Confidence 345788999999999844 4566777788888999999999999999999863 3356789999999999999
Q ss_pred HHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc
Q 002664 802 ITEANGLFERFKENGGV-PDSACYNAMMEGLSNANRAMDAYTLFEETRRKGFNIHTKTCVILLDALHKA 869 (895)
Q Consensus 802 ~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 869 (895)
+..|+++|+.....-.. -++.+...|++++++.|++.+|.+.+..++... |.+....+.++-+..+.
T Consensus 696 y~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~-p~~~~v~FN~a~v~kkl 763 (1018)
T KOG2002|consen 696 YRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLA-PSNTSVKFNLALVLKKL 763 (1018)
T ss_pred HHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-CccchHHhHHHHHHHHH
Confidence 99999999999886443 378999999999999999999999999988874 77776666666655443
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.6e-25 Score=220.31 Aligned_cols=463 Identities=15% Similarity=0.120 Sum_probs=359.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhh
Q 002664 404 YNVLIDMLCKAGNFEDALKFRDAMKEAGLFPNVMTVNIMVDRLCKAQKLDEAFSIFEGMDHKTCTPDAVTFCSLIDGLGK 483 (895)
Q Consensus 404 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 483 (895)
...|+.-..+.|++++|++.....-..+ +.+....-.+-..+.+..+++.....-....+.. +.-..+|..+++.+-.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHH
Confidence 3445555566677777776555443332 1122223333344555555555544433333332 2246678888888888
Q ss_pred cCCHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhh-HHHHHHHHHHcCChhHHHH
Q 002664 484 NGRVDDAYKFYEKMLDTDQIPNAILYTSLIRNFFKHGRKEDGHKIYKEMVQRGCSPDLML-LNTYMDCVFKAGETEKGRA 562 (895)
Q Consensus 484 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~ 562 (895)
.|++++|+..|+.+++..+ .....|..++.++...|+.+.|...|.+.++. .|+... ...+...+-..|+.++|..
T Consensus 129 rg~~~~al~~y~~aiel~p-~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~ 205 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELKP-KFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKA 205 (966)
T ss_pred hchHHHHHHHHHHHHhcCc-hhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHH
Confidence 8888888888888888765 37778888888888888888888888888875 455443 3344455566788999988
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCC
Q 002664 563 LFEEIKAQGFVPDVQSYSILIHGLVKAGFAHETDQLFYAMKKQGCVLDTRAYNTVVDGFCKSGKVNKAYQLLEEMKTKGH 642 (895)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 642 (895)
.+.++++... -=.+.|+.|...+-..|+...|...|++.++.+ +.=..+|-.|...|...+.++.|+..+.+....
T Consensus 206 cYlkAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld-P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l-- 281 (966)
T KOG4626|consen 206 CYLKAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD-PNFLDAYINLGNVYKEARIFDRAVSCYLRALNL-- 281 (966)
T ss_pred HHHHHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhcCC-CcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--
Confidence 8888877631 234678888888889999999999999998864 223568888999999999999999999988876
Q ss_pred CC-CHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-CHHHHH
Q 002664 643 YP-TVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNTVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTP-NAYTWN 720 (895)
Q Consensus 643 ~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~ 720 (895)
.| ....+..+...|..+|..+-|+..++++++.. +.-+..|+.|..++...|++.+|...|.+.+.. .| ...+.+
T Consensus 282 rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--~p~hadam~ 358 (966)
T KOG4626|consen 282 RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRL--CPNHADAMN 358 (966)
T ss_pred CCcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHh--CCccHHHHH
Confidence 34 45577788888999999999999999999874 345789999999999999999999999999984 34 577888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHh
Q 002664 721 CLLDALVKAEEISEAFVCFQSMKDLKCTPNH-VTYSIIINGLCRVRKFNKAFVFWQEMQKQGFKPN-TITYTTMISGLAK 798 (895)
Q Consensus 721 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~ 798 (895)
.|+.+|...|.+++|..+|....+ +.|.. ...+.|...|-.+|++++|+..|++.++ +.|+ ..+|+.++..|-.
T Consensus 359 NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke 434 (966)
T KOG4626|consen 359 NLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKE 434 (966)
T ss_pred HHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHH
Confidence 999999999999999999999988 55654 5688999999999999999999999997 7888 4689999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHH
Q 002664 799 AGNITEANGLFERFKENGGVPD-SACYNAMMEGLSNANRAMDAYTLFEETRRKGFNIHTKTCVILLDALHKAECLEQAAI 877 (895)
Q Consensus 799 ~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 877 (895)
.|+.+.|++.+.+++. +.|. ......|+..|-..|+..+|+.-|++.++.. |..+.++-.++.++.-..+|.+=.+
T Consensus 435 ~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklk-PDfpdA~cNllh~lq~vcdw~D~d~ 511 (966)
T KOG4626|consen 435 MGDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLK-PDFPDAYCNLLHCLQIVCDWTDYDK 511 (966)
T ss_pred hhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccC-CCCchhhhHHHHHHHHHhcccchHH
Confidence 9999999999999998 8884 7789999999999999999999999999873 5567778888888877777776544
Q ss_pred HHHHHHHH
Q 002664 878 VGAVLRET 885 (895)
Q Consensus 878 ~~~~l~~~ 885 (895)
..+++.+.
T Consensus 512 ~~~kl~si 519 (966)
T KOG4626|consen 512 RMKKLVSI 519 (966)
T ss_pred HHHHHHHH
Confidence 44444433
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.9e-25 Score=219.55 Aligned_cols=447 Identities=15% Similarity=0.133 Sum_probs=300.7
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 002664 335 YNTMIMGYGSVGKFDEAFSLFERLKQKGCIPSVIAYNSLLTCLGKKGRVTEAMKIFEAMKKDARPNNTTYNVLIDMLCKA 414 (895)
Q Consensus 335 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 414 (895)
...|..-..+.|++.+|++....+-..+. .+......+-..+.+..+.+.....-....+..|.-..+|..++..+-..
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d~-t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~ker 129 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQEDP-TNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKER 129 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccCC-CcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHh
Confidence 33444444555555555555544444321 12222222333344444444444433333444444444555555555555
Q ss_pred CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhhcCCHHHHHHHH
Q 002664 415 GNFEDALKFRDAMKEAGLFPNVMTVNIMVDRLCKAQKLDEAFSIFEGMDHKTCTPDAVTFCSLIDGLGKNGRVDDAYKFY 494 (895)
Q Consensus 415 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 494 (895)
|++++|+.+++.+++.. |+ ....|..++.++...|+.+.|...|
T Consensus 130 g~~~~al~~y~~aiel~--p~----------------------------------fida~inla~al~~~~~~~~a~~~~ 173 (966)
T KOG4626|consen 130 GQLQDALALYRAAIELK--PK----------------------------------FIDAYINLAAALVTQGDLELAVQCF 173 (966)
T ss_pred chHHHHHHHHHHHHhcC--ch----------------------------------hhHHHhhHHHHHHhcCCCcccHHHH
Confidence 55555555555554432 21 3344444555555555555555555
Q ss_pred HHHHhCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC
Q 002664 495 EKMLDTDQIPNAILYTSLIRNFFKHGRKEDGHKIYKEMVQRGCSPDLMLLNTYMDCVFKAGETEKGRALFEEIKAQGFVP 574 (895)
Q Consensus 495 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 574 (895)
.+.++.++. ..-+...++..+...|+.++|...|.+.++.. +-=...|..+...+..+|+...|+..|+++.+. .|
T Consensus 174 ~~alqlnP~-l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP 249 (966)
T KOG4626|consen 174 FEALQLNPD-LYCARSDLGNLLKAEGRLEEAKACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DP 249 (966)
T ss_pred HHHHhcCcc-hhhhhcchhHHHHhhcccchhHHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CC
Confidence 555444321 22223334444444555555555555444431 112334555555555566666666666666554 33
Q ss_pred C-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHhHHHHH
Q 002664 575 D-VQSYSILIHGLVKAGFAHETDQLFYAMKKQGCVLDTRAYNTVVDGFCKSGKVNKAYQLLEEMKTKGHYPTVVTYGSVI 653 (895)
Q Consensus 575 ~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 653 (895)
+ ...|..|...|...+.++.|...+.+..... +....++..+...|...|..+.|+..+++.++..+. -...|+.+.
T Consensus 250 ~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~Nla 327 (966)
T KOG4626|consen 250 NFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLA 327 (966)
T ss_pred cchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHH
Confidence 3 4567777777777888888888887777652 334677778888889999999999999999987332 466899999
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCH
Q 002664 654 DGLAKIDRLDEAYMLFEEAKSKGIELNTVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTP-NAYTWNCLLDALVKAEEI 732 (895)
Q Consensus 654 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~ 732 (895)
.++...|++.+|...+.+++... +......+.|...|...|.+++|..+|...++ +.| -....+.|+..|-.+|++
T Consensus 328 nALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl 404 (966)
T KOG4626|consen 328 NALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNL 404 (966)
T ss_pred HHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccH
Confidence 99999999999999999999874 44567888999999999999999999999998 456 466788899999999999
Q ss_pred HHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHH
Q 002664 733 SEAFVCFQSMKDLKCTPNH-VTYSIIINGLCRVRKFNKAFVFWQEMQKQGFKPN-TITYTTMISGLAKAGNITEANGLFE 810 (895)
Q Consensus 733 ~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~ 810 (895)
++|+..|++++. +.|+. .+|+.+...|-..|+.+.|+..+.++.. +.|. ...++.|...|...|++.+|+..|+
T Consensus 405 ~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY~ 480 (966)
T KOG4626|consen 405 DDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSYR 480 (966)
T ss_pred HHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHHH
Confidence 999999999998 66776 6899999999999999999999999987 5676 5789999999999999999999999
Q ss_pred HHHHCCCCCC-HHHHHHHHHHHHh
Q 002664 811 RFKENGGVPD-SACYNAMMEGLSN 833 (895)
Q Consensus 811 ~~~~~~~~p~-~~~~~~l~~~~~~ 833 (895)
.+++ +.|| +..|..++.++.-
T Consensus 481 ~aLk--lkPDfpdA~cNllh~lq~ 502 (966)
T KOG4626|consen 481 TALK--LKPDFPDAYCNLLHCLQI 502 (966)
T ss_pred HHHc--cCCCCchhhhHHHHHHHH
Confidence 9998 8885 6777777776543
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.9e-18 Score=180.88 Aligned_cols=664 Identities=13% Similarity=0.107 Sum_probs=317.0
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChh
Q 002664 200 GALATVRESNLMLNLFHQMQELGYEVSVHLFTTLIRVFAREGRVDDALFLLDEMKNNAFSVDIVLYNVCIDCFGKVGKVD 279 (895)
Q Consensus 200 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 279 (895)
+.+...|++++|..++.+++... +.....|..|+.+|-.+|+.+++...+-.+.... +.|...|-.+.....+.|+++
T Consensus 147 N~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~ 224 (895)
T KOG2076|consen 147 NNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNIN 224 (895)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHH
Confidence 33334456666666665555543 3445555555555555555555555554444333 334455555555555555566
Q ss_pred hHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCCHHhH----HHHHHHHHccCCHHHHHHHH
Q 002664 280 MAWKFFHEMKAQGVAPDDVTYTSMIGVLCKSKRLEEAVAMFEQMDRNREVPCAYAY----NTMIMGYGSVGKFDEAFSLF 355 (895)
Q Consensus 280 ~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~g~~~~A~~~~ 355 (895)
+|.-+|.++++.. +++...+-.-...|-+.|+...|.+.|.++....+..|..-. ...++.+...++.+.|.+.+
T Consensus 225 qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~l 303 (895)
T KOG2076|consen 225 QARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKAL 303 (895)
T ss_pred HHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 6665555555542 123333333444555555555555555555554442122111 12233344445555555555
Q ss_pred HHHHhcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--CC
Q 002664 356 ERLKQKG-CIPSVIAYNSLLTCLGKKGRVTEAMKIFEAMKK-DARPNNTTYNVLIDMLCKAGNFEDALKFRDAMKE--AG 431 (895)
Q Consensus 356 ~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~ 431 (895)
+.....+ -.-+...++.++..+.+...++.|......... ...+|..-|.+--. ++ ..+.-... .+
T Consensus 304 e~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~-----~~-----~~~~~~~~~~~~ 373 (895)
T KOG2076|consen 304 EGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDER-----RR-----EEPNALCEVGKE 373 (895)
T ss_pred HHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhh-----cc-----ccccccccCCCC
Confidence 5544421 111233444555555555555555555444432 11122111100000 00 00000000 00
Q ss_pred CCCChhhHHHHHHHHHhcCChhHHHHHHHHhhhCC--CCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcchhhH
Q 002664 432 LFPNVMTVNIMVDRLCKAQKLDEAFSIFEGMDHKT--CTPDAVTFCSLIDGLGKNGRVDDAYKFYEKMLDTDQIPNAILY 509 (895)
Q Consensus 432 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 509 (895)
+.++... -.+.-++.+....+....+........ +..+...|..+..+|...|++.+|+.+|..+.......+...|
T Consensus 374 ~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw 452 (895)
T KOG2076|consen 374 LSYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVW 452 (895)
T ss_pred CCccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhh
Confidence 0001111 011112222222222222222222222 1122334445555555555555555555555544433444455
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHH--------CCCCCCHHHHHH
Q 002664 510 TSLIRNFFKHGRKEDGHKIYKEMVQRGCSPDLMLLNTYMDCVFKAGETEKGRALFEEIKA--------QGFVPDVQSYSI 581 (895)
Q Consensus 510 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~~~~~~~~~~~~ 581 (895)
..++.+|...|.+++|.+.|+..+... +.+...-..+...+.+.|+.++|.+.+..+.. .+..|+......
T Consensus 453 ~~~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~ 531 (895)
T KOG2076|consen 453 YKLARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAH 531 (895)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHH
Confidence 555555555555555555555554431 22333333444444555555555555544321 111222222222
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHc----------------------CCCCCHHhHHHHHHHHHccCChHHHHHHH-----
Q 002664 582 LIHGLVKAGFAHETDQLFYAMKKQ----------------------GCVLDTRAYNTVVDGFCKSGKVNKAYQLL----- 634 (895)
Q Consensus 582 l~~~~~~~g~~~~A~~~~~~~~~~----------------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~----- 634 (895)
....+...|+.++=......|+.. +..........++.+-.+.++.....+-.
T Consensus 532 r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~ 611 (895)
T KOG2076|consen 532 RCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTE 611 (895)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhh
Confidence 333344444444333322222211 01112222233333333333321111111
Q ss_pred -HHHHHCCCCCCH--HhHHHHHHHHHccCCHHHHHHHHHHHHHcCC-CcCH----HHHHHHHHHHHccCCHHHHHHHHHH
Q 002664 635 -EEMKTKGHYPTV--VTYGSVIDGLAKIDRLDEAYMLFEEAKSKGI-ELNT----VIYSSLIDGFGKVGRIDEAYLIMEE 706 (895)
Q Consensus 635 -~~~~~~~~~p~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~ 706 (895)
.-....+..-+. ..+.-++..+++.+++++|..+...+..... ..+. ..-...+.+.+..+++..|...++.
T Consensus 612 ~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~ 691 (895)
T KOG2076|consen 612 FRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRS 691 (895)
T ss_pred hhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 111111222111 2445567788999999999999888876531 1122 2233445567778999999999999
Q ss_pred HHHC-CC--CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCC
Q 002664 707 LMQK-GL--TP-NAYTWNCLLDALVKAEEISEAFVCFQSMKDLKCTPNHVTYSIIINGLCRVRKFNKAFVFWQEMQKQGF 782 (895)
Q Consensus 707 ~~~~-~~--~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 782 (895)
++.. +. .| -...||.......+.++-.--.+.+..+.......++..+..........+.+..|+..+-++...
T Consensus 692 ~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~-- 769 (895)
T KOG2076|consen 692 VITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQ-- 769 (895)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHh--
Confidence 8873 11 22 233455444445555544444444444443221112223333344556678899999988887763
Q ss_pred CCCHHHHHHHHH-HHH----------hcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 002664 783 KPNTITYTTMIS-GLA----------KAGNITEANGLFERFKENGGV-PDSACYNAMMEGLSNANRAMDAYTLFEETRRK 850 (895)
Q Consensus 783 ~p~~~~~~~l~~-~~~----------~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 850 (895)
.|+....+.++. ++. +.-..-.+..++.+..+.... -...++..++++|...|=..-|..+|++++..
T Consensus 770 ~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~ 849 (895)
T KOG2076|consen 770 NPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEV 849 (895)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCC
Confidence 465332222222 221 112344566666666653111 15678889999999999999999999999987
Q ss_pred C-----------CCCCHhhHHHHHHHHHhcCCHHHHHHHHH
Q 002664 851 G-----------FNIHTKTCVILLDALHKAECLEQAAIVGA 880 (895)
Q Consensus 851 ~-----------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 880 (895)
. ...-..+.+.|.-+|..+|+.+-|.++..
T Consensus 850 ~p~~~~~~~~d~~dLrkeAA~NL~LIY~~SGn~~lArqil~ 890 (895)
T KOG2076|consen 850 SPKDVTDPKEDNYDLRKEAAYNLHLIYKKSGNMQLARQILE 890 (895)
T ss_pred CccccccccCCcccHHHHHHhhhhhhhccCCcHHHHHHHHH
Confidence 2 11223556688899999999999998544
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.8e-20 Score=205.75 Aligned_cols=255 Identities=16% Similarity=0.053 Sum_probs=199.1
Q ss_pred cCChHHHHHHHHHHHHcC--CCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCCHHHHH
Q 002664 589 AGFAHETDQLFYAMKKQG--CVLDTRAYNTVVDGFCKSGKVNKAYQLLEEMKTKGHYPTVVTYGSVIDGLAKIDRLDEAY 666 (895)
Q Consensus 589 ~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~ 666 (895)
.+.+++|...|+...+.+ .+.....+..+...+...|++++|+..+++.++..+. ....|..+...+...|++++|.
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~ 385 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPR-VTQSYIKRASMNLELGDPDKAE 385 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHCCCHHHHH
Confidence 467888888888888754 1234566777888888899999999999998876322 4557778888888999999999
Q ss_pred HHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 002664 667 MLFEEAKSKGIELNTVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNAYTWNCLLDALVKAEEISEAFVCFQSMKDLK 746 (895)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 746 (895)
..|+++++.. +.+..++..++..+...|++++|+..|++.++.. +.+...+..++.++.+.|++++|+..|++.++..
T Consensus 386 ~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 463 (615)
T TIGR00990 386 EDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF 463 (615)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 9999988774 4567788888889999999999999999998842 2267778888889999999999999999988743
Q ss_pred CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCH-H-------HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 002664 747 CTPNHVTYSIIINGLCRVRKFNKAFVFWQEMQKQGFKPNT-I-------TYTTMISGLAKAGNITEANGLFERFKENGGV 818 (895)
Q Consensus 747 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~-------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 818 (895)
+.+...|+.+..++...|++++|++.|++..+. .|+. . .++..+..+...|++++|.++++++++ ..
T Consensus 464 -P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l--~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~--l~ 538 (615)
T TIGR00990 464 -PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL--EKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALI--ID 538 (615)
T ss_pred -CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cC
Confidence 345677888889999999999999999998874 3321 1 112222233446899999999999888 55
Q ss_pred C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 002664 819 P-DSACYNAMMEGLSNANRAMDAYTLFEETRRKG 851 (895)
Q Consensus 819 p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 851 (895)
| +..++..++..+.+.|++++|+.+|+++.+..
T Consensus 539 p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 539 PECDIAVATMAQLLLQQGDVDEALKLFERAAELA 572 (615)
T ss_pred CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 6 45678889999999999999999999987763
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.5e-20 Score=207.17 Aligned_cols=258 Identities=12% Similarity=-0.007 Sum_probs=211.8
Q ss_pred ccCChHHHHHHHHHHHHCCC-CC-CHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHH
Q 002664 623 KSGKVNKAYQLLEEMKTKGH-YP-TVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNTVIYSSLIDGFGKVGRIDEA 700 (895)
Q Consensus 623 ~~g~~~~A~~~~~~~~~~~~-~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 700 (895)
..+++++|.+.|++..+.+. .| ....+..+...+...|++++|+..++++++.. +.....|..++..+...|++++|
T Consensus 306 ~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA 384 (615)
T TIGR00990 306 ADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKA 384 (615)
T ss_pred hhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHH
Confidence 35789999999999997642 23 34567788888899999999999999999874 33566888889999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 002664 701 YLIMEELMQKGLTPNAYTWNCLLDALVKAEEISEAFVCFQSMKDLKCTPNHVTYSIIINGLCRVRKFNKAFVFWQEMQKQ 780 (895)
Q Consensus 701 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 780 (895)
+..|+++++.. +.+..++..++..+...|++++|+..|++.++.. +.+...+..++.++...|++++|+..+++.++.
T Consensus 385 ~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 462 (615)
T TIGR00990 385 EEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN 462 (615)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 99999999852 2368899999999999999999999999999854 345667778999999999999999999999874
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHH------HHHHHHH-HHhcCCHHHHHHHHHHHHHCCC
Q 002664 781 GFKPNTITYTTMISGLAKAGNITEANGLFERFKENGGVPD-SAC------YNAMMEG-LSNANRAMDAYTLFEETRRKGF 852 (895)
Q Consensus 781 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~------~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~ 852 (895)
.+.+...++.++.++...|++++|++.|+++++ +.|+ ... +...+.. +...|++++|+.++++++...
T Consensus 463 -~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~--l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~- 538 (615)
T TIGR00990 463 -FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIE--LEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID- 538 (615)
T ss_pred -CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-
Confidence 344578899999999999999999999999998 4442 111 1122222 334699999999999998884
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 002664 853 NIHTKTCVILLDALHKAECLEQAAIVGAVLRETAK 887 (895)
Q Consensus 853 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 887 (895)
|.+..++..+++++...|++++|.+.+++..+...
T Consensus 539 p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~ 573 (615)
T TIGR00990 539 PECDIAVATMAQLLLQQGDVDEALKLFERAAELAR 573 (615)
T ss_pred CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhc
Confidence 66677888999999999999999998888776654
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.7e-17 Score=166.39 Aligned_cols=607 Identities=13% Similarity=0.098 Sum_probs=482.6
Q ss_pred CChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhhHHHHH
Q 002664 206 RESNLMLNLFHQMQELGYEVSVHLFTTLIRVFAREGRVDDALFLLDEMKNNAFSVDIVLYNVCIDCFGKVGKVDMAWKFF 285 (895)
Q Consensus 206 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 285 (895)
++..+|.-++..+.+.+ |.++..|..-++.--..|++..|..+..+.-+.. +.+..+|.--+ +....+.|..+.
T Consensus 265 ~DikKaR~llKSvretn-P~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~c-prSeDvWLeai----RLhp~d~aK~vv 338 (913)
T KOG0495|consen 265 EDIKKARLLLKSVRETN-PKHPPGWIASARLEEVAGKLSVARNLIMKGCEEC-PRSEDVWLEAI----RLHPPDVAKTVV 338 (913)
T ss_pred HHHHHHHHHHHHHHhcC-CCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhhC-CchHHHHHHHH----hcCChHHHHHHH
Confidence 46778999999998875 5567778888888888899999998888776653 44555664333 566777788888
Q ss_pred HHHHHCCCCCCHH-HHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Q 002664 286 HEMKAQGVAPDDV-TYTSMIGVLCKSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLFERLKQKGCI 364 (895)
Q Consensus 286 ~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 364 (895)
...++. -|+++ .|..-+. -..+...=.+++++.++.-|. ++..|-..+ ...+.+.|+.++.++.+. ++
T Consensus 339 A~Avr~--~P~Sv~lW~kA~d---LE~~~~~K~RVlRKALe~iP~-sv~LWKaAV----elE~~~darilL~rAvec-cp 407 (913)
T KOG0495|consen 339 ANAVRF--LPTSVRLWLKAAD---LESDTKNKKRVLRKALEHIPR-SVRLWKAAV----ELEEPEDARILLERAVEC-CP 407 (913)
T ss_pred HHHHHh--CCCChhhhhhHHh---hhhHHHHHHHHHHHHHHhCCc-hHHHHHHHH----hccChHHHHHHHHHHHHh-cc
Confidence 888775 34443 3332222 123344445677787776554 666665544 456667799999999986 33
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH----HHCCCCCChhhHH
Q 002664 365 PSVIAYNSLLTCLGKKGRVTEAMKIFEAMKKDARPNNTTYNVLIDMLCKAGNFEDALKFRDAM----KEAGLFPNVMTVN 440 (895)
Q Consensus 365 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~~~~ 440 (895)
.+.. |.-++.+..-++.|..++.+..+..|.+...|.+-...--.+|+.+...+++.+- ...|+..+...|.
T Consensus 408 ~s~d----LwlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl 483 (913)
T KOG0495|consen 408 QSMD----LWLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWL 483 (913)
T ss_pred chHH----HHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHH
Confidence 3333 4445667788999999999999999999999999999999999999988887654 4568888888898
Q ss_pred HHHHHHHhcCChhHHHHHHHHhhhCCCCCC--hhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHh
Q 002664 441 IMVDRLCKAQKLDEAFSIFEGMDHKTCTPD--AVTFCSLIDGLGKNGRVDDAYKFYEKMLDTDQIPNAILYTSLIRNFFK 518 (895)
Q Consensus 441 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 518 (895)
.-...|-..|..-....+....+..|+... ..+|..-.+.|.+.+.++-|..+|..+++-.+ .+...|...+..--.
T Consensus 484 ~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp-~k~slWlra~~~ek~ 562 (913)
T KOG0495|consen 484 KEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFP-CKKSLWLRAAMFEKS 562 (913)
T ss_pred HHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhcc-chhHHHHHHHHHHHh
Confidence 888899999999999999988887776532 46888999999999999999999999998764 366678888877778
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 002664 519 HGRKEDGHKIYKEMVQRGCSPDLMLLNTYMDCVFKAGETEKGRALFEEIKAQGFVPDVQSYSILIHGLVKAGFAHETDQL 598 (895)
Q Consensus 519 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 598 (895)
.|..++-..+++++... ++.....+..+...+...|+...|+.++..+.+.... +...|..-+........++.|..+
T Consensus 563 hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~l 640 (913)
T KOG0495|consen 563 HGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDL 640 (913)
T ss_pred cCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHH
Confidence 89999999999999987 3556667777778888999999999999999887432 566777778888889999999999
Q ss_pred HHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCC-HHhHHHHHHHHHccCCHHHHHHHHHHHHHcCC
Q 002664 599 FYAMKKQGCVLDTRAYNTVVDGFCKSGKVNKAYQLLEEMKTKGHYPT-VVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGI 677 (895)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 677 (895)
|.+.... .|+...|..-+....-.++.++|++++++.++. .|+ ...|..+.+.+.+.++.+.|.+.|..-.+. +
T Consensus 641 lakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-c 715 (913)
T KOG0495|consen 641 LAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-C 715 (913)
T ss_pred HHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-C
Confidence 9998875 678888888888888889999999999999886 344 457888889999999999999999887766 4
Q ss_pred CcCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 002664 678 ELNTVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNAYTWNCLLDALVKAEEISEAFVCFQSMKDLKCTPNHVTYSII 757 (895)
Q Consensus 678 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 757 (895)
+..+..|..+...-.+.|.+..|..++++..-.+. -+...|...+..-.+.|+.+.|..+..++++ .++.+...|.--
T Consensus 716 P~~ipLWllLakleEk~~~~~rAR~ildrarlkNP-k~~~lwle~Ir~ElR~gn~~~a~~lmakALQ-ecp~sg~LWaEa 793 (913)
T KOG0495|consen 716 PNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNP-KNALLWLESIRMELRAGNKEQAELLMAKALQ-ECPSSGLLWAEA 793 (913)
T ss_pred CCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCC-CcchhHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCccchhHHHH
Confidence 66777888898888999999999999999887643 3889999999999999999999999999998 345666778878
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCC
Q 002664 758 INGLCRVRKFNKAFVFWQEMQKQGFKPNTITYTTMISGLAKAGNITEANGLFERFKENGGVP-DSACYNAMMEGLSNANR 836 (895)
Q Consensus 758 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~ 836 (895)
|....+.++-....+.+++ ..-|+.+...+...+....++++|.+.|++.+. ..| ...+|..+...+..+|.
T Consensus 794 I~le~~~~rkTks~DALkk-----ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk--~d~d~GD~wa~fykfel~hG~ 866 (913)
T KOG0495|consen 794 IWLEPRPQRKTKSIDALKK-----CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVK--KDPDNGDAWAWFYKFELRHGT 866 (913)
T ss_pred HHhccCcccchHHHHHHHh-----ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHc--cCCccchHHHHHHHHHHHhCC
Confidence 8877777775555555444 345778888888899999999999999999998 556 46788888888999998
Q ss_pred HHHHHHHHHHHHHC
Q 002664 837 AMDAYTLFEETRRK 850 (895)
Q Consensus 837 ~~~A~~~~~~~~~~ 850 (895)
-++-.+++......
T Consensus 867 eed~kev~~~c~~~ 880 (913)
T KOG0495|consen 867 EEDQKEVLKKCETA 880 (913)
T ss_pred HHHHHHHHHHHhcc
Confidence 88888888876655
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.8e-17 Score=172.54 Aligned_cols=671 Identities=13% Similarity=0.100 Sum_probs=390.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh
Q 002664 160 CIELVVSCVKSKMLREAFDIIQTMRKFKFRPAFTAYTTLIGALATVRESNLMLNLFHQMQELGYEVSVHLFTTLIRVFAR 239 (895)
Q Consensus 160 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 239 (895)
.......+...|+.++|..++..+++.. +....+|.+|...|-+.|+.+++...+-.+-..+ +-|...|..+......
T Consensus 142 ll~eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~ 219 (895)
T KOG2076|consen 142 LLGEANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQ 219 (895)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHh
Confidence 3344444556699999999999998775 5677889999999999999999999887776664 4567899999999999
Q ss_pred cCChhHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCCHhH
Q 002664 240 EGRVDDALFLLDEMKNNAFSVDIVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGVAPDDV----TYTSMIGVLCKSKRLEE 315 (895)
Q Consensus 240 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~----~~~~l~~~~~~~g~~~~ 315 (895)
+|.+++|.-+|.++++.. +++...+-.-+..|-+.|+...|...|.++.....+.|.. .-...++.+...++-+.
T Consensus 220 ~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~ 298 (895)
T KOG2076|consen 220 LGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERER 298 (895)
T ss_pred cccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHH
Confidence 999999999999999986 4455555556778999999999999999999874321222 22334566777788899
Q ss_pred HHHHHHHHhhCC-CCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 002664 316 AVAMFEQMDRNR-EVPCAYAYNTMIMGYGSVGKFDEAFSLFERLKQKGCIPSVIAYNSLLTCLGKKGRVTEAMKIFEAMK 394 (895)
Q Consensus 316 A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 394 (895)
|.+.++...... -..+...++.++..|.+...++.|......+......+|...+.+-= .++ .-...+....
T Consensus 299 a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~-----~~~--~~~~~~~~~~ 371 (895)
T KOG2076|consen 299 AAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDE-----RRR--EEPNALCEVG 371 (895)
T ss_pred HHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhh-----hcc--ccccccccCC
Confidence 999999987622 12356678899999999999999999998887744344433221100 000 0000011111
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCChhhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChh
Q 002664 395 KDARPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEAG--LFPNVMTVNIMVDRLCKAQKLDEAFSIFEGMDHKTCTPDAV 472 (895)
Q Consensus 395 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 472 (895)
+..+.+..+ ..+.-++......+....+...+.+.. +.-+...|.-+..+|...|++.+|+.+|..+......-+..
T Consensus 372 ~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~ 450 (895)
T KOG2076|consen 372 KELSYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAF 450 (895)
T ss_pred CCCCccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchh
Confidence 122222222 111111222222222222222222222 11223344445555555555555555555555443333444
Q ss_pred hHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHH--------cCCCCCHhhH
Q 002664 473 TFCSLIDGLGKNGRVDDAYKFYEKMLDTDQIPNAILYTSLIRNFFKHGRKEDGHKIYKEMVQ--------RGCSPDLMLL 544 (895)
Q Consensus 473 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--------~~~~~~~~~~ 544 (895)
.|..++.+|...|.+++|...|++++...| .+..+-..|...+.+.|+.++|.+.+..+.. .+..|+....
T Consensus 451 vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p-~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~ 529 (895)
T KOG2076|consen 451 VWYKLARCYMELGEYEEAIEFYEKVLILAP-DNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRIL 529 (895)
T ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHH
Confidence 555555555555555555555555555432 2444444555555555555555555554321 1122233333
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHCC----------------------CCCCHHHHHHHHHHHHhcCChHHHHHH----
Q 002664 545 NTYMDCVFKAGETEKGRALFEEIKAQG----------------------FVPDVQSYSILIHGLVKAGFAHETDQL---- 598 (895)
Q Consensus 545 ~~l~~~~~~~~~~~~a~~~~~~~~~~~----------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~---- 598 (895)
....+.+.+.|+.++=......++... ..........++.+-.+.++.....+-
T Consensus 530 ~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~ 609 (895)
T KOG2076|consen 530 AHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDG 609 (895)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccch
Confidence 334444455555444333333332210 111112222233333333332211111
Q ss_pred --HHHHHHcCCCCCH--HhHHHHHHHHHccCChHHHHHHHHHHHHCCCC-CCHH----hHHHHHHHHHccCCHHHHHHHH
Q 002664 599 --FYAMKKQGCVLDT--RAYNTVVDGFCKSGKVNKAYQLLEEMKTKGHY-PTVV----TYGSVIDGLAKIDRLDEAYMLF 669 (895)
Q Consensus 599 --~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~----~~~~l~~~~~~~~~~~~A~~~~ 669 (895)
+......++..+. ..+..++...++.+++++|+.+...+...... -+.. .-...+.+.+..+++..|...+
T Consensus 610 ~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~l 689 (895)
T KOG2076|consen 610 TEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYL 689 (895)
T ss_pred hhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 1111222222222 23456777889999999999999988765321 1221 1223445667889999999999
Q ss_pred HHHHHc-CC---CcCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 002664 670 EEAKSK-GI---ELNTVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNAYTWNCLLDALVKAEEISEAFVCFQSMKDL 745 (895)
Q Consensus 670 ~~~~~~-~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 745 (895)
+.+... +. +.-...|+.......+.++-.--.+.+..+.......++......+..+..++.+..|+..+-++...
T Consensus 690 R~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~ 769 (895)
T KOG2076|consen 690 RSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQ 769 (895)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHh
Confidence 998865 11 12234556444555555543333344444433221112333333344556788999999988888773
Q ss_pred CCCCCHHHHH-HHHHHHHh----------cCCHhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002664 746 KCTPNHVTYS-IIINGLCR----------VRKFNKAFVFWQEMQKQG-FKPNTITYTTMISGLAKAGNITEANGLFERFK 813 (895)
Q Consensus 746 ~~~p~~~~~~-~l~~~~~~----------~g~~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 813 (895)
.|+....+ +++-++.. .-..-.++.++++..+.. ......++..++++|-..|-+.-|+.+|++++
T Consensus 770 --~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL 847 (895)
T KOG2076|consen 770 --NPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVL 847 (895)
T ss_pred --CCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHh
Confidence 46644444 23322221 112345667776666541 11246788899999999999999999999999
Q ss_pred HCCCCC---------C----HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 002664 814 ENGGVP---------D----SACYNAMMEGLSNANRAMDAYTLFEE 846 (895)
Q Consensus 814 ~~~~~p---------~----~~~~~~l~~~~~~~g~~~~A~~~~~~ 846 (895)
+. .| + ..+-..|.-.|..+|+...|..++++
T Consensus 848 ~~--~p~~~~~~~~d~~dLrkeAA~NL~LIY~~SGn~~lArqil~k 891 (895)
T KOG2076|consen 848 EV--SPKDVTDPKEDNYDLRKEAAYNLHLIYKKSGNMQLARQILEK 891 (895)
T ss_pred CC--CccccccccCCcccHHHHHHhhhhhhhccCCcHHHHHHHHHh
Confidence 84 22 1 13344566679999999999988875
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.7e-16 Score=160.78 Aligned_cols=611 Identities=11% Similarity=0.025 Sum_probs=477.3
Q ss_pred cCChhHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHH
Q 002664 240 EGRVDDALFLLDEMKNNAFSVDIVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGVAPDDVTYTSMIGVLCKSKRLEEAVAM 319 (895)
Q Consensus 240 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~ 319 (895)
.++...|+.++..+.+.+ +.+...|-+-.+.--..|++..|..+..+=-+. ++-+...|.-- ++....+.|..+
T Consensus 264 l~DikKaR~llKSvretn-P~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~-cprSeDvWLea----iRLhp~d~aK~v 337 (913)
T KOG0495|consen 264 LEDIKKARLLLKSVRETN-PKHPPGWIASARLEEVAGKLSVARNLIMKGCEE-CPRSEDVWLEA----IRLHPPDVAKTV 337 (913)
T ss_pred HHHHHHHHHHHHHHHhcC-CCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhh-CCchHHHHHHH----HhcCChHHHHHH
Confidence 457788999999998887 445666766667777788888888877554443 23344555432 456677778888
Q ss_pred HHHHhhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC
Q 002664 320 FEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLFERLKQKGCIPSVIAYNSLLTCLGKKGRVTEAMKIFEAMKKDARP 399 (895)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 399 (895)
.-......|. ++..|..-+. -..+...=.+++.+..+.- |+.+ .|-.+.....+.+.|+.++.+..+-.|.
T Consensus 338 vA~Avr~~P~-Sv~lW~kA~d---LE~~~~~K~RVlRKALe~i--P~sv---~LWKaAVelE~~~darilL~rAveccp~ 408 (913)
T KOG0495|consen 338 VANAVRFLPT-SVRLWLKAAD---LESDTKNKKRVLRKALEHI--PRSV---RLWKAAVELEEPEDARILLERAVECCPQ 408 (913)
T ss_pred HHHHHHhCCC-ChhhhhhHHh---hhhHHHHHHHHHHHHHHhC--CchH---HHHHHHHhccChHHHHHHHHHHHHhccc
Confidence 8888776554 4444433222 2234445566777777752 4433 2334455667777899999999998888
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHh----hhCCCCCChhhHH
Q 002664 400 NNTTYNVLIDMLCKAGNFEDALKFRDAMKEAGLFPNVMTVNIMVDRLCKAQKLDEAFSIFEGM----DHKTCTPDAVTFC 475 (895)
Q Consensus 400 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~~~~ 475 (895)
+...|..+. +..-++.|..++.+..+. ++.+...|.+-...-...|+.+....++.+- ...|+..+...|.
T Consensus 409 s~dLwlAla----rLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl 483 (913)
T KOG0495|consen 409 SMDLWLALA----RLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWL 483 (913)
T ss_pred hHHHHHHHH----HHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHH
Confidence 888777655 456688999999998875 5667888887777777889988888887654 4557788888898
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHhCCCCc--chhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHH
Q 002664 476 SLIDGLGKNGRVDDAYKFYEKMLDTDQIP--NAILYTSLIRNFFKHGRKEDGHKIYKEMVQRGCSPDLMLLNTYMDCVFK 553 (895)
Q Consensus 476 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 553 (895)
.-+..+...|..--+..+....+..|... ...+|..-...|.+.+.++-|..+|...++- ++.+...|......--.
T Consensus 484 ~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~ 562 (913)
T KOG0495|consen 484 KEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKS 562 (913)
T ss_pred HHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHh
Confidence 88889999999998889999888877642 3457888899999999999999999999885 45567778887777778
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHH
Q 002664 554 AGETEKGRALFEEIKAQGFVPDVQSYSILIHGLVKAGFAHETDQLFYAMKKQGCVLDTRAYNTVVDGFCKSGKVNKAYQL 633 (895)
Q Consensus 554 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 633 (895)
.|..++-..+++++...- +.....|......+-..|+...|..++..+.+.. +.+...|...+.....+..++.|..+
T Consensus 563 hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~l 640 (913)
T KOG0495|consen 563 HGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDL 640 (913)
T ss_pred cCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHH
Confidence 899999999999998873 3345566666777888899999999999998875 44788999999999999999999999
Q ss_pred HHHHHHCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCC
Q 002664 634 LEEMKTKGHYPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNTVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLT 713 (895)
Q Consensus 634 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 713 (895)
|.+.... .|+...|.--+....-.++.++|+.+++++++. ++.-...|..+...+.+.++++.|.+.|..-.+. .+
T Consensus 641 lakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP 716 (913)
T KOG0495|consen 641 LAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CP 716 (913)
T ss_pred HHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CC
Confidence 9998875 577777777777777889999999999999986 4555678999999999999999999999887764 33
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 002664 714 PNAYTWNCLLDALVKAEEISEAFVCFQSMKDLKCTPNHVTYSIIINGLCRVRKFNKAFVFWQEMQKQGFKPNTITYTTMI 793 (895)
Q Consensus 714 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 793 (895)
-.+..|..|...-.+.|.+-+|..++++..-.+ +.+...|...|..-.+.|+.+.|..++.++++. ++.+...|..-|
T Consensus 717 ~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI 794 (913)
T KOG0495|consen 717 NSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAI 794 (913)
T ss_pred CCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHH
Confidence 478889999998899999999999999998754 556678889999999999999999999999886 566677888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHH
Q 002664 794 SGLAKAGNITEANGLFERFKENGGVPDSACYNAMMEGLSNANRAMDAYTLFEETRRKGFNIHTKTCVILLDALHKAECLE 873 (895)
Q Consensus 794 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 873 (895)
...-+.++--+.+..+++ ..-|+......+..+....++++|+++|++..+.+ |....+|..+...+...|.-+
T Consensus 795 ~le~~~~rkTks~DALkk-----ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d-~d~GD~wa~fykfel~hG~ee 868 (913)
T KOG0495|consen 795 WLEPRPQRKTKSIDALKK-----CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD-PDNGDAWAWFYKFELRHGTEE 868 (913)
T ss_pred HhccCcccchHHHHHHHh-----ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC-CccchHHHHHHHHHHHhCCHH
Confidence 877777665555444433 34478888999999999999999999999999985 777888888888999999888
Q ss_pred HHHHHHHHHHHH
Q 002664 874 QAAIVGAVLRET 885 (895)
Q Consensus 874 ~A~~~~~~l~~~ 885 (895)
+-..|.++-...
T Consensus 869 d~kev~~~c~~~ 880 (913)
T KOG0495|consen 869 DQKEVLKKCETA 880 (913)
T ss_pred HHHHHHHHHhcc
Confidence 888766665443
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.2e-20 Score=200.81 Aligned_cols=302 Identities=15% Similarity=0.139 Sum_probs=187.6
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhc
Q 002664 234 IRVFAREGRVDDALFLLDEMKNNAFSVDIVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGVAPD---DVTYTSMIGVLCKS 310 (895)
Q Consensus 234 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~---~~~~~~l~~~~~~~ 310 (895)
+..+...|++++|...|.++.+.+ +.+..++..++..+...|++++|..+++.+...+..++ ...+..++..|.+.
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 334456666666666666666653 33445666666666667777777777666665422111 13456666677777
Q ss_pred CCHhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcCCHHHH
Q 002664 311 KRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLFERLKQKGCIPS----VIAYNSLLTCLGKKGRVTEA 386 (895)
Q Consensus 311 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A 386 (895)
|++++|..+|+++.+..+. +..++..++..+.+.|++++|.+.++.+.+.+..+. ...+..++..+.+.|++++|
T Consensus 121 g~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 199 (389)
T PRK11788 121 GLLDRAEELFLQLVDEGDF-AEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAA 199 (389)
T ss_pred CCHHHHHHHHHHHHcCCcc-hHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence 7777777777777665432 556666777777777777777777777766543322 12344566666677777777
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhhhCC
Q 002664 387 MKIFEAMKKDARPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEAGLFPNVMTVNIMVDRLCKAQKLDEAFSIFEGMDHKT 466 (895)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 466 (895)
.+.|+++.+..|.+..++..++..+.+.|++++|.++++++.+.+......++..++.+|+..|++++|...++++.+.
T Consensus 200 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~- 278 (389)
T PRK11788 200 RALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE- 278 (389)
T ss_pred HHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence 7777777666666666777777777777777777777777765432112344566666777777777777777766655
Q ss_pred CCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCH
Q 002664 467 CTPDAVTFCSLIDGLGKNGRVDDAYKFYEKMLDTDQIPNAILYTSLIRNFFK---HGRKEDGHKIYKEMVQRGCSPDL 541 (895)
Q Consensus 467 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~~~~~~ 541 (895)
.|+...+..++..+.+.|++++|..+++++++.. |+...+..++..+.. .|+.+++..+++++++.++.|++
T Consensus 279 -~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~--P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p 353 (389)
T PRK11788 279 -YPGADLLLALAQLLEEQEGPEAAQALLREQLRRH--PSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKP 353 (389)
T ss_pred -CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--cCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCC
Confidence 2344445666667777777777777777766653 455555555555443 34666677767666665555444
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.1e-20 Score=198.69 Aligned_cols=300 Identities=11% Similarity=0.095 Sum_probs=158.8
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcC---HHHHHHHHHHHHhcCC
Q 002664 166 SCVKSKMLREAFDIIQTMRKFKFRPAFTAYTTLIGALATVRESNLMLNLFHQMQELGYEVS---VHLFTTLIRVFAREGR 242 (895)
Q Consensus 166 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~ 242 (895)
.+...|++++|...|+++.+.. +.+..++..++..+...|++++|..+++.+...+..++ ...+..++..|.+.|+
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 3444555555555555555442 22334455555555555555555555555554321111 1344555556666666
Q ss_pred hhHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHhHHHH
Q 002664 243 VDDALFLLDEMKNNAFSVDIVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGVAPDD----VTYTSMIGVLCKSKRLEEAVA 318 (895)
Q Consensus 243 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~----~~~~~l~~~~~~~g~~~~A~~ 318 (895)
+++|..+|+++.+.. +.+..+++.++.++.+.|++++|.+.++.+.+.+..+.. ..+..++..+.+.|++++|..
T Consensus 123 ~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 201 (389)
T PRK11788 123 LDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARA 201 (389)
T ss_pred HHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 666666666665542 334455556666666666666666666666554322211 123445555556666666666
Q ss_pred HHHHHhhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCC
Q 002664 319 MFEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLFERLKQKGCIPSVIAYNSLLTCLGKKGRVTEAMKIFEAMKKDAR 398 (895)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 398 (895)
.|+++.+..+. +..++..++..|.+.|++++|.++++++.+.+......++..++.+|...|++++|.+.++++.+..|
T Consensus 202 ~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p 280 (389)
T PRK11788 202 LLKKALAADPQ-CVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYP 280 (389)
T ss_pred HHHHHHhHCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 66666554432 44455556666666666666666666665543222233455555666666666666666665554433
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh---cCChhHHHHHHHHhhhCCCCCCh
Q 002664 399 PNNTTYNVLIDMLCKAGNFEDALKFRDAMKEAGLFPNVMTVNIMVDRLCK---AQKLDEAFSIFEGMDHKTCTPDA 471 (895)
Q Consensus 399 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~ 471 (895)
.. ..+..++..+.+.|++++|..+++++.+. .|+..++..++..++. .|+.+++..+++++.+.++.|++
T Consensus 281 ~~-~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p 353 (389)
T PRK11788 281 GA-DLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKP 353 (389)
T ss_pred Cc-hHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCC
Confidence 22 33355566666666666666666655553 3555555555554443 33555666666655554444333
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.4e-18 Score=194.97 Aligned_cols=331 Identities=11% Similarity=0.034 Sum_probs=235.3
Q ss_pred HHHHHHhhcCChHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 002664 91 LVIGVLRRLKDVNLAINYFRWVERKTDQAHSLEAYNSLLMVMAVSKNFEPLEEILGEMSLAGIGPTNNTCIELVVSCVKS 170 (895)
Q Consensus 91 ~~~~~l~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~~~~~~ 170 (895)
.++.-+.+.|++..|+..++-+... .|..+++...++.++...|++++|...++++.... |.+..++..+...+.+.
T Consensus 47 ~~~~~~~~~g~~~~A~~l~~~~l~~--~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~ 123 (656)
T PRK15174 47 LFAIACLRKDETDVGLTLLSDRVLT--AKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKS 123 (656)
T ss_pred HHHHHHHhcCCcchhHHHhHHHHHh--CCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHc
Confidence 3444455568888888887777644 35667777777777778888888888888877652 45566777777788888
Q ss_pred CChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHH
Q 002664 171 KMLREAFDIIQTMRKFKFRPAFTAYTTLIGALATVRESNLMLNLFHQMQELGYEVSVHLFTTLIRVFAREGRVDDALFLL 250 (895)
Q Consensus 171 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 250 (895)
|++++|...+++..... +.+...+..++..+...|++++|...++++.... +.+...+..+ ..+...|++++|...+
T Consensus 124 g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~-P~~~~a~~~~-~~l~~~g~~~eA~~~~ 200 (656)
T PRK15174 124 KQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEV-PPRGDMIATC-LSFLNKSRLPEDHDLA 200 (656)
T ss_pred CCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-CCCHHHHHHH-HHHHHcCCHHHHHHHH
Confidence 88888888888777653 3445667777778888888888888887776653 2233333333 3366778888888888
Q ss_pred HHHHhCCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhH----HHHHHHHHhhC
Q 002664 251 DEMKNNAFSVDIVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGVAPDDVTYTSMIGVLCKSKRLEE----AVAMFEQMDRN 326 (895)
Q Consensus 251 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~----A~~~~~~~~~~ 326 (895)
+.+.+....++...+..++..+.+.|++++|...++++.+... .+...+..+...+...|++++ |+..|++++..
T Consensus 201 ~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p-~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l 279 (656)
T PRK15174 201 RALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGL-DGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF 279 (656)
T ss_pred HHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh
Confidence 8777654333444445556677778888888888888777642 255667777777888888775 67888887777
Q ss_pred CCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHH
Q 002664 327 REVPCAYAYNTMIMGYGSVGKFDEAFSLFERLKQKGCIPSVIAYNSLLTCLGKKGRVTEAMKIFEAMKKDARPNNTTYNV 406 (895)
Q Consensus 327 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 406 (895)
.+. +..++..++..+...|++++|...++++.+..+. +...+..+..++.+.|++++|+..|+.+....|.+...+..
T Consensus 280 ~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~ 357 (656)
T PRK15174 280 NSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRY 357 (656)
T ss_pred CCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHH
Confidence 665 6777777888888888888888888887776432 45566777777778888888888888777666666555555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC
Q 002664 407 LIDMLCKAGNFEDALKFRDAMKEA 430 (895)
Q Consensus 407 l~~~~~~~g~~~~A~~~~~~~~~~ 430 (895)
++.++...|+.++|...|++..+.
T Consensus 358 ~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 358 AAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh
Confidence 667777788888888888777764
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.6e-18 Score=194.60 Aligned_cols=354 Identities=11% Similarity=0.045 Sum_probs=276.9
Q ss_pred HHHHHHHHHccCCcchHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHh
Q 002664 125 YNSLLMVMAVSKNFEPLEEILGEMSLAGIGPTNNTCIELVVSCVKSKMLREAFDIIQTMRKFKFRPAFTAYTTLIGALAT 204 (895)
Q Consensus 125 ~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 204 (895)
...++..+.+.|++++|..+++...... +.+..+...++.++...|++++|...|+++.... +.+..++..+...+..
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~ 122 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLK 122 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHH
Confidence 4556677788999999999999988764 4456667777777888999999999999988774 4456778888899999
Q ss_pred cCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhhHHHH
Q 002664 205 VRESNLMLNLFHQMQELGYEVSVHLFTTLIRVFAREGRVDDALFLLDEMKNNAFSVDIVLYNVCIDCFGKVGKVDMAWKF 284 (895)
Q Consensus 205 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 284 (895)
.|++++|...++++.+.. +.+...+..++.++...|++++|...++.+....+ .+...+..+ ..+...|++++|...
T Consensus 123 ~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P-~~~~a~~~~-~~l~~~g~~~eA~~~ 199 (656)
T PRK15174 123 SKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVP-PRGDMIATC-LSFLNKSRLPEDHDL 199 (656)
T ss_pred cCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCC-CCHHHHHHH-HHHHHcCCHHHHHHH
Confidence 999999999999998863 45677888889999999999999999998876642 233344333 347788999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCCHHH----HHHHHHHHHh
Q 002664 285 FHEMKAQGVAPDDVTYTSMIGVLCKSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFDE----AFSLFERLKQ 360 (895)
Q Consensus 285 ~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----A~~~~~~~~~ 360 (895)
++.+.+....++...+..++..+...|++++|+..++++....+. +...+..++..|...|++++ |...|+++.+
T Consensus 200 ~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~ 278 (656)
T PRK15174 200 ARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ 278 (656)
T ss_pred HHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh
Confidence 999877643344555566677888999999999999999887765 77888889999999999885 7899999888
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChh-hH
Q 002664 361 KGCIPSVIAYNSLLTCLGKKGRVTEAMKIFEAMKKDARPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEAGLFPNVM-TV 439 (895)
Q Consensus 361 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~ 439 (895)
..+ .+..++..++..+.+.|++++|+..+++.....|.+..++..++.++.+.|++++|...++++...+ |+.. .+
T Consensus 279 l~P-~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~--P~~~~~~ 355 (656)
T PRK15174 279 FNS-DNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREK--GVTSKWN 355 (656)
T ss_pred hCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--ccchHHH
Confidence 753 3677888899999999999999999999988888888889999999999999999999999888753 4433 33
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhC
Q 002664 440 NIMVDRLCKAQKLDEAFSIFEGMDHKTCTPDAVTFCSLIDGLGKNGRVDDAYKFYEKMLDT 500 (895)
Q Consensus 440 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 500 (895)
..+...+...|+.++|...|++..+... +.. ...+++|...|.+.++.
T Consensus 356 ~~~a~al~~~G~~deA~~~l~~al~~~P--~~~-----------~~~~~ea~~~~~~~~~~ 403 (656)
T PRK15174 356 RYAAAALLQAGKTSEAESVFEHYIQARA--SHL-----------PQSFEEGLLALDGQISA 403 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCh--hhc-----------hhhHHHHHHHHHHHHHh
Confidence 4456678889999999999988877632 211 23445566666665554
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.5e-18 Score=194.17 Aligned_cols=406 Identities=8% Similarity=0.052 Sum_probs=186.2
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHH
Q 002664 226 SVHLFTTLIRVFAREGRVDDALFLLDEMKNNAFSVDIVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGVAPDDVTYTSMIG 305 (895)
Q Consensus 226 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~ 305 (895)
++.-....+.+....|+.++|++++.+..... +.+...+..++..+...|++++|.++|++.++.. +.+...+..++.
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~ 91 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLIL 91 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 33444444444445555555555555544321 2233334444555555555555555555544431 112333444444
Q ss_pred HHHhcCCHhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 002664 306 VLCKSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLFERLKQKGCIPSVIAYNSLLTCLGKKGRVTE 385 (895)
Q Consensus 306 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 385 (895)
.+...|++++|+..+++++...+. +.. +..++..+...|+.++|...++++.+..+. +...+..++.++...|..+.
T Consensus 92 ~l~~~g~~~eA~~~l~~~l~~~P~-~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~ 168 (765)
T PRK10049 92 TLADAGQYDEALVKAKQLVSGAPD-KAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAP 168 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCC-CHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHH
Confidence 455555555555555555544333 333 444555555555555555555555554321 33334444444445555555
Q ss_pred HHHHHHHHhcCCCCC-----HHHHHHHHHHHH-----hcCCH---HHHHHHHHHHHHC-CCCCChh-hHH----HHHHHH
Q 002664 386 AMKIFEAMKKDARPN-----NTTYNVLIDMLC-----KAGNF---EDALKFRDAMKEA-GLFPNVM-TVN----IMVDRL 446 (895)
Q Consensus 386 A~~~~~~~~~~~~~~-----~~~~~~l~~~~~-----~~g~~---~~A~~~~~~~~~~-~~~~~~~-~~~----~l~~~~ 446 (895)
|++.++.+.. .|.. ......++.... ..+++ ++|++.++.+.+. ...|+.. .+. ..+..+
T Consensus 169 Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~L 247 (765)
T PRK10049 169 ALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGAL 247 (765)
T ss_pred HHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHH
Confidence 5555544433 1110 001111111111 11223 5566666666542 1112211 110 112234
Q ss_pred HhcCChhHHHHHHHHhhhCCCC-CChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCc---chhhHHHHHHHHHhcCCH
Q 002664 447 CKAQKLDEAFSIFEGMDHKTCT-PDAVTFCSLIDGLGKNGRVDDAYKFYEKMLDTDQIP---NAILYTSLIRNFFKHGRK 522 (895)
Q Consensus 447 ~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~ 522 (895)
...|++++|+..|+.+...+.+ |+ .....++..|...|++++|+..|++++...+.. .......+..++...|++
T Consensus 248 l~~g~~~eA~~~~~~ll~~~~~~P~-~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~ 326 (765)
T PRK10049 248 LARDRYKDVISEYQRLKAEGQIIPP-WAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENY 326 (765)
T ss_pred HHhhhHHHHHHHHHHhhccCCCCCH-HHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccH
Confidence 4556677777777776665422 21 122224556667777777777777766543221 123344555566667777
Q ss_pred HHHHHHHHHHHHcCC-----------CCC---HhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 002664 523 EDGHKIYKEMVQRGC-----------SPD---LMLLNTYMDCVFKAGETEKGRALFEEIKAQGFVPDVQSYSILIHGLVK 588 (895)
Q Consensus 523 ~~A~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 588 (895)
++|...++.+..... .|+ ...+..+...+...|+.++|+..++++.... +.+...+..++..+..
T Consensus 327 ~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~ 405 (765)
T PRK10049 327 PGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQA 405 (765)
T ss_pred HHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 777777776665421 011 1122233334444455555555555544432 2234444444445555
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHC
Q 002664 589 AGFAHETDQLFYAMKKQGCVLDTRAYNTVVDGFCKSGKVNKAYQLLEEMKTK 640 (895)
Q Consensus 589 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 640 (895)
.|++++|...++++.... +.+...+...+..+...|++++|..+++++++.
T Consensus 406 ~g~~~~A~~~l~~al~l~-Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 406 RGWPRAAENELKKAEVLE-PRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred cCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 555555555555554432 222333444444444555555555555555543
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.1e-17 Score=192.18 Aligned_cols=406 Identities=14% Similarity=0.095 Sum_probs=202.2
Q ss_pred CCCHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHH
Q 002664 119 AHSLEAYNSLLMVMAVSKNFEPLEEILGEMSLAGIGPTNNTCIELVVSCVKSKMLREAFDIIQTMRKFKFRPAFTAYTTL 198 (895)
Q Consensus 119 ~~~~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 198 (895)
+.++..-.-.+.+....|++++|++++.++... -+.+...+..+...+.+.|++++|..++++..+.. +.+...+..+
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~-~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 89 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVH-MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGL 89 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 334444444444555555555555555554431 12333344555555555555555555555544432 2233444455
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCh
Q 002664 199 IGALATVRESNLMLNLFHQMQELGYEVSVHLFTTLIRVFAREGRVDDALFLLDEMKNNAFSVDIVLYNVCIDCFGKVGKV 278 (895)
Q Consensus 199 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 278 (895)
+.++...|++++|+..++++.+.. +.+.. +..++.++...|++++|+..++++.+.. +.+...+..++.++...|..
T Consensus 90 a~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~ 166 (765)
T PRK10049 90 ILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLS 166 (765)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCh
Confidence 555555555555555555555542 33334 5555555555555555555555555543 22333344445555555555
Q ss_pred hhHHHHHHHHHHCCCCCCH------HHHHHHHHHHH-----hcCCH---hHHHHHHHHHhhCC-CCCCHH-hH----HHH
Q 002664 279 DMAWKFFHEMKAQGVAPDD------VTYTSMIGVLC-----KSKRL---EEAVAMFEQMDRNR-EVPCAY-AY----NTM 338 (895)
Q Consensus 279 ~~A~~~~~~~~~~g~~p~~------~~~~~l~~~~~-----~~g~~---~~A~~~~~~~~~~~-~~~~~~-~~----~~l 338 (895)
++|++.++.... .|+. .....++.... ..+++ ++|++.++.+++.. ..|+.. .+ ...
T Consensus 167 e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~ 243 (765)
T PRK10049 167 APALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDR 243 (765)
T ss_pred HHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHH
Confidence 555555544332 1111 01111111111 11223 55666666665431 111111 11 111
Q ss_pred HHHHHccCCHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHh
Q 002664 339 IMGYGSVGKFDEAFSLFERLKQKGCI-PSVIAYNSLLTCLGKKGRVTEAMKIFEAMKKDARPN----NTTYNVLIDMLCK 413 (895)
Q Consensus 339 ~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~ 413 (895)
+..+...|++++|+..|+++.+.+.+ |+. ....+...|...|++++|+..|+++....|.+ ......+..++..
T Consensus 244 l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~ 322 (765)
T PRK10049 244 LGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLE 322 (765)
T ss_pred HHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHh
Confidence 22334556666666666666665421 221 22224556666666666666666665443322 2344455555666
Q ss_pred cCCHHHHHHHHHHHHHCCC-----------CCCh---hhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHH
Q 002664 414 AGNFEDALKFRDAMKEAGL-----------FPNV---MTVNIMVDRLCKAQKLDEAFSIFEGMDHKTCTPDAVTFCSLID 479 (895)
Q Consensus 414 ~g~~~~A~~~~~~~~~~~~-----------~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 479 (895)
.|++++|..+++++..... .|+. ..+..+...+...|++++|++.++++.... +.+...+..++.
T Consensus 323 ~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~ 401 (765)
T PRK10049 323 SENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYAS 401 (765)
T ss_pred cccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 6666666666666655320 1121 123344555566666666666666665542 334556666666
Q ss_pred HHhhcCCHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 002664 480 GLGKNGRVDDAYKFYEKMLDTDQIPNAILYTSLIRNFFKHGRKEDGHKIYKEMVQR 535 (895)
Q Consensus 480 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 535 (895)
.+...|++++|++.+++++...| .+...+...+..+...|++++|..+++++++.
T Consensus 402 l~~~~g~~~~A~~~l~~al~l~P-d~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 402 VLQARGWPRAAENELKKAEVLEP-RNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHhcCCHHHHHHHHHHHHhhCC-CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 66666666666666666666543 24455555666666666666666666666664
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.4e-16 Score=175.51 Aligned_cols=466 Identities=11% Similarity=0.066 Sum_probs=299.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 002664 367 VIAYNSLLTCLGKKGRVTEAMKIFEAMKKDARPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEAGLFPNVMTVNIMVDRL 446 (895)
Q Consensus 367 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 446 (895)
+.+...-+-...+.|+++.|+..|+++.+..|.+......++..+...|+.++|+..+++..... .........+...+
T Consensus 34 ~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly 112 (822)
T PRK14574 34 ADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAY 112 (822)
T ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHH
Confidence 33444445556788888888888888888777775443388888888888888888888887311 11222223335577
Q ss_pred HhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHhcCCHHHHH
Q 002664 447 CKAQKLDEAFSIFEGMDHKTCTPDAVTFCSLIDGLGKNGRVDDAYKFYEKMLDTDQIPNAILYTSLIRNFFKHGRKEDGH 526 (895)
Q Consensus 447 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 526 (895)
...|++++|+++++++.+.... ++..+..++..+...++.++|+..++++....+ +...+..++..+...++..+|+
T Consensus 113 ~~~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp--~~~~~l~layL~~~~~~~~~AL 189 (822)
T PRK14574 113 RNEKRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAERDP--TVQNYMTLSYLNRATDRNYDAL 189 (822)
T ss_pred HHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCc--chHHHHHHHHHHHhcchHHHHH
Confidence 7788888888888888887533 566677777888888888888888888887653 3444444444454566666688
Q ss_pred HHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 002664 527 KIYKEMVQRGCSPDLMLLNTYMDCVFKAGETEKGRALFEEIKAQGFVPDVQSYSILIHGLVKAGFAHETDQLFYAMKKQG 606 (895)
Q Consensus 527 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 606 (895)
+.++++.+.. +.+...+..+...+.+.|-...|.++..+-. +..+-...... +.+.|.+..+- +
T Consensus 190 ~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p------~~f~~~~~~~l-----~~~~~a~~vr~----a 253 (822)
T PRK14574 190 QASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENP------NLVSAEHYRQL-----ERDAAAEQVRM----A 253 (822)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCc------cccCHHHHHHH-----HHHHHHHHHhh----c
Confidence 8888888863 4456677777778888888888877666532 22111111000 01111111111 1
Q ss_pred CCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHC-CCCCCH-H----hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcC
Q 002664 607 CVLDTRAYNTVVDGFCKSGKVNKAYQLLEEMKTK-GHYPTV-V----TYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELN 680 (895)
Q Consensus 607 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~-~----~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 680 (895)
..++..- -. +---.+.|+.-++.+... +..|.. . +..-.+-++...+++.+++..|+.+...+.+..
T Consensus 254 ~~~~~~~----~~---r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P 326 (822)
T PRK14574 254 VLPTRSE----TE---RFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMP 326 (822)
T ss_pred ccccccc----hh---hHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCC
Confidence 0010000 00 000234555556665542 111221 1 112234466777888888888888887765544
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC-----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--------
Q 002664 681 TVIYSSLIDGFGKVGRIDEAYLIMEELMQKGL-----TPNAYTWNCLLDALVKAEEISEAFVCFQSMKDLKC-------- 747 (895)
Q Consensus 681 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-------- 747 (895)
..+-..++++|...+++++|..+|..+..... +++......|..+|..++++++|..+++++.+...
T Consensus 327 ~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~ 406 (822)
T PRK14574 327 DYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGL 406 (822)
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCC
Confidence 55667788888888888888888888866321 12333356788888888888888888888876211
Q ss_pred ---CCCH---HHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-C
Q 002664 748 ---TPNH---VTYSIIINGLCRVRKFNKAFVFWQEMQKQGFKPNTITYTTMISGLAKAGNITEANGLFERFKENGGVP-D 820 (895)
Q Consensus 748 ---~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~ 820 (895)
.|+. ..+..++..+...|++.+|.+.++++... -+-|......+...+...|.+.+|.+.++.+.. ..| +
T Consensus 407 ~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~-aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~--l~P~~ 483 (822)
T PRK14574 407 PGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSST-APANQNLRIALASIYLARDLPRKAEQELKAVES--LAPRS 483 (822)
T ss_pred CCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--hCCcc
Confidence 1221 22335666777888888888888888764 345677788888888888888888888876665 566 5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 002664 821 SACYNAMMEGLSNANRAMDAYTLFEETRRKGFNIHTKTCVILLD 864 (895)
Q Consensus 821 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 864 (895)
..+...++.++...|++++|..+.+.+.+. .|.+. ....|..
T Consensus 484 ~~~~~~~~~~al~l~e~~~A~~~~~~l~~~-~Pe~~-~~~~l~r 525 (822)
T PRK14574 484 LILERAQAETAMALQEWHQMELLTDDVISR-SPEDI-PSQELDR 525 (822)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhh-CCCch-hHHHHHH
Confidence 677778888888888888888888888776 24443 3334433
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.7e-16 Score=175.23 Aligned_cols=453 Identities=13% Similarity=0.088 Sum_probs=288.7
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 002664 228 HLFTTLIRVFAREGRVDDALFLLDEMKNNAFSVDIVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGVAPDDVTYTSMIGVL 307 (895)
Q Consensus 228 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~ 307 (895)
.+-..-+-...+.|+++.|+..|++..+..+.....++ .++..+...|+.++|+.++++..... .........++..+
T Consensus 35 ~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly 112 (822)
T PRK14574 35 DTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAY 112 (822)
T ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHH
Confidence 34444445567899999999999999887422112344 77788888899999999999988321 12233444446678
Q ss_pred HhcCCHhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 002664 308 CKSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLFERLKQKGCIPSVIAYNSLLTCLGKKGRVTEAM 387 (895)
Q Consensus 308 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 387 (895)
...|++++|+++|+++++..+. +...+..++..|...++.++|++.++++.... |+...+..++..+...++..+|+
T Consensus 113 ~~~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d--p~~~~~l~layL~~~~~~~~~AL 189 (822)
T PRK14574 113 RNEKRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAERD--PTVQNYMTLSYLNRATDRNYDAL 189 (822)
T ss_pred HHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC--cchHHHHHHHHHHHhcchHHHHH
Confidence 8889999999999999998877 67788888889999999999999999998874 55555655555555566776799
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhhhCCC
Q 002664 388 KIFEAMKKDARPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEAGLFPNVMTVNIMVDRLCKAQKLDEAFSIFEGMDHKTC 467 (895)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 467 (895)
+.++++....|.+...+..+..++.+.|-...|.++..+- |+..+-...... +.+.|.+..+...
T Consensus 190 ~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~------p~~f~~~~~~~l-----~~~~~a~~vr~a~---- 254 (822)
T PRK14574 190 QASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKEN------PNLVSAEHYRQL-----ERDAAAEQVRMAV---- 254 (822)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhC------ccccCHHHHHHH-----HHHHHHHHHhhcc----
Confidence 9999999999999999999999999999999988776653 332221111110 1122222221111
Q ss_pred CCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCC-cc-----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 002664 468 TPDAVTFCSLIDGLGKNGRVDDAYKFYEKMLDTDQI-PN-----AILYTSLIRNFFKHGRKEDGHKIYKEMVQRGCSPDL 541 (895)
Q Consensus 468 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 541 (895)
.++..- -. +.--.+.|+.-++.++..-.. |. ..+..-.+.++...+++.++++.|+.+...+.+-..
T Consensus 255 ~~~~~~----~~---r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~ 327 (822)
T PRK14574 255 LPTRSE----TE---RFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPD 327 (822)
T ss_pred cccccc----hh---hHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCH
Confidence 111000 00 011235555666665552111 21 112234455677778888888888888776655455
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC---------
Q 002664 542 MLLNTYMDCVFKAGETEKGRALFEEIKAQG-----FVPDVQSYSILIHGLVKAGFAHETDQLFYAMKKQGC--------- 607 (895)
Q Consensus 542 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--------- 607 (895)
.+...+.++|...+.+++|..+++.+.... ..++......|.-+|...+++++|..+++.+.+...
T Consensus 328 y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~ 407 (822)
T PRK14574 328 YARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLP 407 (822)
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCC
Confidence 567777778888888888888888775542 122333345667777777777777777777766311
Q ss_pred --CC--C-HHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHH
Q 002664 608 --VL--D-TRAYNTVVDGFCKSGKVNKAYQLLEEMKTKGHYPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNTV 682 (895)
Q Consensus 608 --~~--~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 682 (895)
.| | ...+..++..+.-.|+..+|.+.++++....+. |......+.+.+...|.+.+|.+.++.+.... +-+..
T Consensus 408 ~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~-n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~-P~~~~ 485 (822)
T PRK14574 408 GKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPA-NQNLRIALASIYLARDLPRKAEQELKAVESLA-PRSLI 485 (822)
T ss_pred CCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC-CccHH
Confidence 01 1 122233445555666666666666666655332 55566666666666666666666665555442 33445
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHH
Q 002664 683 IYSSLIDGFGKVGRIDEAYLIMEELMQ 709 (895)
Q Consensus 683 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 709 (895)
+....+..+...+++.+|..+.+.+.+
T Consensus 486 ~~~~~~~~al~l~e~~~A~~~~~~l~~ 512 (822)
T PRK14574 486 LERAQAETAMALQEWHQMELLTDDVIS 512 (822)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 555556666666666666666666665
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.2e-17 Score=161.49 Aligned_cols=283 Identities=14% Similarity=0.102 Sum_probs=217.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHH-Hc-cCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccC
Q 002664 583 IHGLVKAGFAHETDQLFYAMKKQGCVLDTRAYNTVVDGF-CK-SGKVNKAYQLLEEMKTKGHYPTVVTYGSVIDGLAKID 660 (895)
Q Consensus 583 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~-~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 660 (895)
...|.+.|+++.|.++++-+.+.+-...+.+-+.|-..+ .+ ..++.+|.++-+..+..+-. +......-.+.-...|
T Consensus 426 a~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dry-n~~a~~nkgn~~f~ng 504 (840)
T KOG2003|consen 426 AGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRY-NAAALTNKGNIAFANG 504 (840)
T ss_pred HHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccccc-CHHHhhcCCceeeecC
Confidence 345788999999999998888765444444444433332 33 34678888887777654322 3333333334445679
Q ss_pred CHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 002664 661 RLDEAYMLFEEAKSKGIELNTVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNAYTWNCLLDALVKAEEISEAFVCFQ 740 (895)
Q Consensus 661 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 740 (895)
++++|.+.+++++..+..-....| .+...+...|++++|+++|-++... +..+..++..+...|....+..+|++++.
T Consensus 505 d~dka~~~ykeal~ndasc~ealf-niglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~ 582 (840)
T KOG2003|consen 505 DLDKAAEFYKEALNNDASCTEALF-NIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLM 582 (840)
T ss_pred cHHHHHHHHHHHHcCchHHHHHHH-HhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence 999999999999977533333334 3455678899999999999887652 22377788889999999999999999999
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 002664 741 SMKDLKCTPNHVTYSIIINGLCRVRKFNKAFVFWQEMQKQGFKPNTITYTTMISGLAKAGNITEANGLFERFKENGGVPD 820 (895)
Q Consensus 741 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 820 (895)
++.. -++.|+...+.|.+.|-+.|+-..|++.+-.-.+. ++-+..+...|..-|....-+++|+.+|+++.- +.|+
T Consensus 583 q~~s-lip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~ 658 (840)
T KOG2003|consen 583 QANS-LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPN 658 (840)
T ss_pred Hhcc-cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCcc
Confidence 8876 35678888999999999999999999887666543 566778888888888889999999999999876 8899
Q ss_pred HHHHHHHHHHH-HhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHH
Q 002664 821 SACYNAMMEGL-SNANRAMDAYTLFEETRRKGFNIHTKTCVILLDALHKAECLE 873 (895)
Q Consensus 821 ~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 873 (895)
..-|..|+..| .+.|++.+|+.+|+.+..+ +|.+...+..|.+.....|..+
T Consensus 659 ~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl~d 711 (840)
T KOG2003|consen 659 QSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGLKD 711 (840)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccchh
Confidence 99998877655 5689999999999999888 7999999999999998887543
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.7e-16 Score=150.55 Aligned_cols=477 Identities=13% Similarity=0.096 Sum_probs=281.1
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHhhCCCCCCHHhH-HHHHHHHHccCCHHHHHHHHHHHHhcCCCCC----HHHHHHHHHH
Q 002664 302 SMIGVLCKSKRLEEAVAMFEQMDRNREVPCAYAY-NTMIMGYGSVGKFDEAFSLFERLKQKGCIPS----VIAYNSLLTC 376 (895)
Q Consensus 302 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~ 376 (895)
.|..-|.....+.+|+..|+-+++...-|+.... ..++..|.+...+.+|++++......-+..+ ....+.+.-.
T Consensus 206 nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvt 285 (840)
T KOG2003|consen 206 NLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVT 285 (840)
T ss_pred HHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCee
Confidence 3444555566667777777776666555554333 2345566677777777777776665421111 2234444455
Q ss_pred HHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChh------------hHHHHHH
Q 002664 377 LGKKGRVTEAMKIFEAMKKDARPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEAGLFPNVM------------TVNIMVD 444 (895)
Q Consensus 377 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~------------~~~~l~~ 444 (895)
+.+.|.++.|+..|+......|.-...++. +-++..-|+-++..+.|.+|......||.. ..+.-+.
T Consensus 286 fiq~gqy~dainsfdh~m~~~pn~~a~~nl-~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~ 364 (840)
T KOG2003|consen 286 FIQAGQYDDAINSFDHCMEEAPNFIAALNL-IICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIK 364 (840)
T ss_pred EEecccchhhHhhHHHHHHhCccHHhhhhh-hhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHh
Confidence 667777777777777666554444444443 334444577777777777776543333222 2221111
Q ss_pred -----HHHhcC--ChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcchhhHHHHHHHHH
Q 002664 445 -----RLCKAQ--KLDEAFSIFEGMDHKTCTPDAVTFCSLIDGLGKNGRVDDAYKFYEKMLDTDQIPNAILYTSLIRNFF 517 (895)
Q Consensus 445 -----~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 517 (895)
-..+.. +-++++-.-.+++.--+.|+.. .+ .+-.++.++...-... -...-..-...+.
T Consensus 365 nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa----~g--------~dwcle~lk~s~~~~l--a~dlei~ka~~~l 430 (840)
T KOG2003|consen 365 NDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFA----AG--------CDWCLESLKASQHAEL--AIDLEINKAGELL 430 (840)
T ss_pred hHHHHHHHHhhhhhHHHHHHHHHHHhccccccchh----cc--------cHHHHHHHHHhhhhhh--hhhhhhhHHHHHH
Confidence 111111 1112221112222111112110 00 0111111111111000 0001112233567
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHH--cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 002664 518 KHGRKEDGHKIYKEMVQRGCSPDLMLLNTYMDCVFK--AGETEKGRALFEEIKAQGFVPDVQSYSILIHGLVKAGFAHET 595 (895)
Q Consensus 518 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 595 (895)
+.|+++.|++++.-+.+..-.......+.+...++- -.++..|...-+..+... .-+......-.+.-...|++++|
T Consensus 431 k~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka 509 (840)
T KOG2003|consen 431 KNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKA 509 (840)
T ss_pred hccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHH
Confidence 888888888888877665433333333333333333 235666666666555432 12333333333334456888888
Q ss_pred HHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 002664 596 DQLFYAMKKQGCVLDTRAYNTVVDGFCKSGKVNKAYQLLEEMKTKGHYPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSK 675 (895)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 675 (895)
.+.+++.+..+-. -..+...+.-.+-..|+.++|++.|-++... ...+..+...+.+.|....+...|++++.++...
T Consensus 510 ~~~ykeal~ndas-c~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl 587 (840)
T KOG2003|consen 510 AEFYKEALNNDAS-CTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL 587 (840)
T ss_pred HHHHHHHHcCchH-HHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc
Confidence 8888888765311 1222233344566788899999888776543 2236667777888888888899999988887765
Q ss_pred CCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHH
Q 002664 676 GIELNTVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNAYTWNCLLDALVKAEEISEAFVCFQSMKDLKCTPNHVTYS 755 (895)
Q Consensus 676 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 755 (895)
++.|+.+.+.|...|-+.|+-.+|..++-+--+. ++.+..+...|...|....-+++|+.+|++..- +.|+..-|.
T Consensus 588 -ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwq 663 (840)
T KOG2003|consen 588 -IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQ 663 (840)
T ss_pred -CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHH
Confidence 5778888889999999999988888876555442 445888888888888888888999999988875 678888888
Q ss_pred HHHH-HHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 002664 756 IIIN-GLCRVRKFNKAFVFWQEMQKQGFKPNTITYTTMISGLAKAGN 801 (895)
Q Consensus 756 ~l~~-~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 801 (895)
.++. ++.+.|+|.+|+++|+...++ ++.|......|++.+...|.
T Consensus 664 lmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 664 LMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence 6664 555678999999999888765 77788888888888777664
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.1e-13 Score=135.51 Aligned_cols=518 Identities=12% Similarity=0.108 Sum_probs=326.7
Q ss_pred CHHhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 002664 331 CAYAYNTMIMGYGSVGKFDEAFSLFERLKQKGCIPSVIAYNSLLTCLGKKGRVTEAMKIFEAMKKDARPNNTTYNVLIDM 410 (895)
Q Consensus 331 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 410 (895)
+...|..-+..-..++++..|..+|++++..+. .+...|.-.+.+-.++..+..|..+++......|.-...|...+.+
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd~-r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ym 150 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVDY-RNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYM 150 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhccc-ccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 334444444455566667777777777776542 3556666677777777777777777777777777777777777777
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhhcCCHHHH
Q 002664 411 LCKAGNFEDALKFRDAMKEAGLFPNVMTVNIMVDRLCKAQKLDEAFSIFEGMDHKTCTPDAVTFCSLIDGLGKNGRVDDA 490 (895)
Q Consensus 411 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 490 (895)
--..|+...|.++|++-.+. .|+...|.+.+..-.+-+.++.|..++++..-. .|++.+|...+..-.+.|....|
T Consensus 151 EE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~a 226 (677)
T KOG1915|consen 151 EEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALA 226 (677)
T ss_pred HHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHH
Confidence 77778888888888887774 588888888888888888888888888887654 47888888888888888888888
Q ss_pred HHHHHHHHhCCCC--cchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HhhHHHHHHHHHHcCChhHHHHHHHH
Q 002664 491 YKFYEKMLDTDQI--PNAILYTSLIRNFFKHGRKEDGHKIYKEMVQRGCSPD--LMLLNTYMDCVFKAGETEKGRALFEE 566 (895)
Q Consensus 491 ~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~ 566 (895)
..+|..+++.-.. .+...+.+.+..-..+..++.|.-+|+-.+.. ++.+ ...+..+...--+-|+.....+..-
T Consensus 227 R~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv- 304 (677)
T KOG1915|consen 227 RSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIV- 304 (677)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHh-
Confidence 8888887764111 12223333333334455666677777666664 2222 2233333332222333222111100
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCH
Q 002664 567 IKAQGFVPDVQSYSILIHGLVKAGFAHETDQLFYAMKKQGCVLDTRAYNTVVDGFCKSGKVNKAYQLLEEMKTKGHYPTV 646 (895)
Q Consensus 567 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 646 (895)
.+-.--++.+++.+ +.|-.+|--.+..-...|+.+...+++++++.. ++|-.
T Consensus 305 --------------------------~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ 356 (677)
T KOG1915|consen 305 --------------------------GKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPAS 356 (677)
T ss_pred --------------------------hhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchh
Confidence 00011233334332 445666666666666667777777777777654 33321
Q ss_pred H--hHHH-----HHHHH---HccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHH----HccCCHHHHHHHHHHHHHCCC
Q 002664 647 V--TYGS-----VIDGL---AKIDRLDEAYMLFEEAKSKGIELNTVIYSSLIDGF----GKVGRIDEAYLIMEELMQKGL 712 (895)
Q Consensus 647 ~--~~~~-----l~~~~---~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~g~~~~A~~~~~~~~~~~~ 712 (895)
. .|.. +--++ ....+.+.+.++|+.+++. +|...+++..+--.| .++.++..|.+++..++- .
T Consensus 357 ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~ 433 (677)
T KOG1915|consen 357 EKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--K 433 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--c
Confidence 1 1111 11111 2456777888888888774 555556655443333 456778888888887764 5
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHC-CCCCCHHHHHH
Q 002664 713 TPNAYTWNCLLDALVKAEEISEAFVCFQSMKDLKCTPNHVTYSIIINGLCRVRKFNKAFVFWQEMQKQ-GFKPNTITYTT 791 (895)
Q Consensus 713 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~ 791 (895)
.|...++...+..-.+.++++....+|++.++.+ |.+..+|...+..-...|+.+.|..+|+-++++ .+......|..
T Consensus 434 cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwka 512 (677)
T KOG1915|consen 434 CPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKA 512 (677)
T ss_pred CCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHH
Confidence 6777777777777788888888888888888744 446677777777777788888888888888765 22333456777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-----hcC-----------CHHHHHHHHHHHHHCCC-CC
Q 002664 792 MISGLAKAGNITEANGLFERFKENGGVPDSACYNAMMEGLS-----NAN-----------RAMDAYTLFEETRRKGF-NI 854 (895)
Q Consensus 792 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~-----~~g-----------~~~~A~~~~~~~~~~~~-~~ 854 (895)
.|..-...|.+++|..+++++++ ..+...+|...+..-. +.| +...|+.+|+++...-- ..
T Consensus 513 YIdFEi~~~E~ekaR~LYerlL~--rt~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~ 590 (677)
T KOG1915|consen 513 YIDFEIEEGEFEKARALYERLLD--RTQHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTYLKEST 590 (677)
T ss_pred hhhhhhhcchHHHHHHHHHHHHH--hcccchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhcC
Confidence 77777778888888888888887 4555557776665543 344 56678888887654311 11
Q ss_pred CHhhHHHHHHHH----HhcCCHHHHHHHHHHHHHHHHhh
Q 002664 855 HTKTCVILLDAL----HKAECLEQAAIVGAVLRETAKSQ 889 (895)
Q Consensus 855 ~~~~~~~l~~~~----~~~g~~~~A~~~~~~l~~~~~~~ 889 (895)
+......|..+. ...|...+...|.+++-+.-++.
T Consensus 591 ~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s~mPk~vKKr 629 (677)
T KOG1915|consen 591 PKEERLMLLEAWKNMEETFGTEGDVERVQSKMPKKVKKR 629 (677)
T ss_pred cHHHHHHHHHHHHHHHHhcCchhhHHHHHHhccHHHHhh
Confidence 133333344333 34566666677666666655544
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.2e-13 Score=133.29 Aligned_cols=450 Identities=14% Similarity=0.103 Sum_probs=330.7
Q ss_pred cCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHhHHHHH
Q 002664 190 PAFTAYTTLIGALATVRESNLMLNLFHQMQELGYEVSVHLFTTLIRVFAREGRVDDALFLLDEMKNNAFSVDIVLYNVCI 269 (895)
Q Consensus 190 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 269 (895)
.+...|.....--..++++..|..+|++++... ..+...|...+..-.+...+..|..++++....-+..| ..|...+
T Consensus 71 ~~~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVd-qlWyKY~ 148 (677)
T KOG1915|consen 71 LNMQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVD-QLWYKYI 148 (677)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHH-HHHHHHH
Confidence 345556666666667888999999999998865 44777888888888999999999999999887643333 3455667
Q ss_pred HHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCCHH
Q 002664 270 DCFGKVGKVDMAWKFFHEMKAQGVAPDDVTYTSMIGVLCKSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFD 349 (895)
Q Consensus 270 ~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 349 (895)
.+--..|++..|.++|+...+ ..|+..+|.+.|..-.+-+..+.|..+|++.+-.. |++.+|...+..--+.|+..
T Consensus 149 ymEE~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~H--P~v~~wikyarFE~k~g~~~ 224 (677)
T KOG1915|consen 149 YMEEMLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVH--PKVSNWIKYARFEEKHGNVA 224 (677)
T ss_pred HHHHHhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheec--ccHHHHHHHHHHHHhcCcHH
Confidence 777788999999999999887 58999999999999999999999999999987643 78999999888889999999
Q ss_pred HHHHHHHHHHhcCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCCHHHHHHH--
Q 002664 350 EAFSLFERLKQKGCI--PSVIAYNSLLTCLGKKGRVTEAMKIFEAMKKDARPN--NTTYNVLIDMLCKAGNFEDALKF-- 423 (895)
Q Consensus 350 ~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~-- 423 (895)
.|..+|+.+++.-.. .+...+.+.+..-.++..++.|.-+|+-.....|.+ ...|......--+-|+-....+.
T Consensus 225 ~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv 304 (677)
T KOG1915|consen 225 LARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIV 304 (677)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHh
Confidence 999999988874211 123345555555567788899999999888877776 55676666666666765443332
Q ss_pred ------HHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChh--hHHHHHHH--------HhhcCCH
Q 002664 424 ------RDAMKEAGLFPNVMTVNIMVDRLCKAQKLDEAFSIFEGMDHKTCTPDAV--TFCSLIDG--------LGKNGRV 487 (895)
Q Consensus 424 ------~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~--------~~~~g~~ 487 (895)
++.++..+ +-|..+|--.++.....|+.+...+++++++.. ++|-.. .|...+.. -....+.
T Consensus 305 ~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ 382 (677)
T KOG1915|consen 305 GKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDV 382 (677)
T ss_pred hhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 33444433 346677777888888889999999999998876 333211 12222211 1346788
Q ss_pred HHHHHHHHHHHhCCCCcchhhHHHHHHH----HHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhHHHHH
Q 002664 488 DDAYKFYEKMLDTDQIPNAILYTSLIRN----FFKHGRKEDGHKIYKEMVQRGCSPDLMLLNTYMDCVFKAGETEKGRAL 563 (895)
Q Consensus 488 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 563 (895)
+.+.++|+.+++. ++....++..+--. ..++.+...|.+++...+. ..|...++..++..-.+.++++....+
T Consensus 383 ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkL 459 (677)
T KOG1915|consen 383 ERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKL 459 (677)
T ss_pred HHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHH
Confidence 8889999988885 33455555544433 3457788888888887765 478888888888888888999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCC
Q 002664 564 FEEIKAQGFVPDVQSYSILIHGLVKAGFAHETDQLFYAMKKQG-CVLDTRAYNTVVDGFCKSGKVNKAYQLLEEMKTKGH 642 (895)
Q Consensus 564 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 642 (895)
+++.++-+ +.+..+|......-...|+.+.|..+|.-++... +......|...|..-...|.++.|..+++++++..
T Consensus 460 YEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt- 537 (677)
T KOG1915|consen 460 YEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT- 537 (677)
T ss_pred HHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc-
Confidence 99888875 3367778877777778888899988888887653 11224566677777777888888888888888763
Q ss_pred CCCHHhHHHHH
Q 002664 643 YPTVVTYGSVI 653 (895)
Q Consensus 643 ~p~~~~~~~l~ 653 (895)
+...+|.++.
T Consensus 538 -~h~kvWisFA 547 (677)
T KOG1915|consen 538 -QHVKVWISFA 547 (677)
T ss_pred -ccchHHHhHH
Confidence 3344555444
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.2e-13 Score=130.02 Aligned_cols=505 Identities=13% Similarity=0.097 Sum_probs=291.0
Q ss_pred HccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 002664 343 GSVGKFDEAFSLFERLKQKGCIPSVIAYNSLLTCLGKKGRVTEAMKIFEAMKKDARPNNTTYNVLIDMLCKAGNFEDALK 422 (895)
Q Consensus 343 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 422 (895)
....++..|+.+++--...+-.....+-..+..++...|++++|...|..+.....++...+..|+.++.-.|.+.+|..
T Consensus 33 ls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~ 112 (557)
T KOG3785|consen 33 LSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKS 112 (557)
T ss_pred HhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHH
Confidence 34455555555555544433222233444556666667777777777766665555566666666666666677777766
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCC
Q 002664 423 FRDAMKEAGLFPNVMTVNIMVDRLCKAQKLDEAFSIFEGMDHKTCTPDAVTFCSLIDGLGKNGRVDDAYKFYEKMLDTDQ 502 (895)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 502 (895)
+..+..+ ++..-..+...-.+.++-++-..+.+.+... ..--.+++......-.+.+|+++|++.+..++
T Consensus 113 ~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ 182 (557)
T KOG3785|consen 113 IAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQDNP 182 (557)
T ss_pred HHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCh
Confidence 6544322 2223333444444556555555544443322 12223344444444467777788777776532
Q ss_pred CcchhhHH-HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 002664 503 IPNAILYT-SLIRNFFKHGRKEDGHKIYKEMVQRGCSPDLMLLNTYMDCVFKAGETEKGRALFEEIKAQGFVPDVQSYSI 581 (895)
Q Consensus 503 ~~~~~~~~-~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 581 (895)
+-...+ .+.-+|.+..-++-+.+++...++. ++.+....+.......+.-+-..|..-.+.+...+-. . ..
T Consensus 183 --ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~-~----~~ 254 (557)
T KOG3785|consen 183 --EYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQ-E----YP 254 (557)
T ss_pred --hhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccc-c----ch
Confidence 222222 3445667777777777777777665 2333444444444444443333444444444433211 1 11
Q ss_pred HHHHHHhc-----CChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHhHHHHHHH-
Q 002664 582 LIHGLVKA-----GFAHETDQLFYAMKKQGCVLDTRAYNTVVDGFCKSGKVNKAYQLLEEMKTKGHYPTVVTYGSVIDG- 655 (895)
Q Consensus 582 l~~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~- 655 (895)
.+.-+++. ..-+.|.+++-.+.+. -| .+-..++-.|.+.+++++|..+.+++.-. .|-......++.+
T Consensus 255 f~~~l~rHNLVvFrngEgALqVLP~L~~~--IP--EARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilKgvv~aa 328 (557)
T KOG3785|consen 255 FIEYLCRHNLVVFRNGEGALQVLPSLMKH--IP--EARLNLIIYYLNQNDVQEAISLCKDLDPT--TPYEYILKGVVFAA 328 (557)
T ss_pred hHHHHHHcCeEEEeCCccHHHhchHHHhh--Ch--HhhhhheeeecccccHHHHHHHHhhcCCC--ChHHHHHHHHHHHH
Confidence 22333333 3456777777666553 22 23344566688999999999888776422 2333332222221
Q ss_pred ----HHccCCHHHHHHHHHHHHHcCCCcCHH-HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 002664 656 ----LAKIDRLDEAYMLFEEAKSKGIELNTV-IYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNAYTWNCLLDALVKAE 730 (895)
Q Consensus 656 ----~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 730 (895)
........-|.+.|+-.-+.+..-|.. --.++...+.-..++++.+..+..+...-...|...+ .+..+++..|
T Consensus 329 lGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atg 407 (557)
T KOG3785|consen 329 LGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATG 407 (557)
T ss_pred hhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhc
Confidence 122233556666666554444333322 2234445555556789999888887774333344444 4889999999
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHhcCCHHHHHHHH
Q 002664 731 EISEAFVCFQSMKDLKCTPNHVTYSIIINGLCRVRKFNKAFVFWQEMQKQGFKPNTITYTTMI-SGLAKAGNITEANGLF 809 (895)
Q Consensus 731 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~-~~~~~~g~~~~A~~~~ 809 (895)
++.+|.++|-++....++.+......+..+|.+.++++-|++++-++- .+.+..+...+| ..|.+.+.+=-|.+.|
T Consensus 408 ny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~---t~~e~fsLLqlIAn~CYk~~eFyyaaKAF 484 (557)
T KOG3785|consen 408 NYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTN---TPSERFSLLQLIANDCYKANEFYYAAKAF 484 (557)
T ss_pred ChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcC---CchhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999988765444444444578899999999999988876653 333444544444 4588999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 002664 810 ERFKENGGVPDSACYNAMMEGLSNANRAMDAYTLFEETRRKGFNI-HTKTCVILLDALHKAECLEQAAIVGAVLRETAK 887 (895)
Q Consensus 810 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 887 (895)
+.+.. ..|++..| .|+-.....+|..+......| -.......+..+...++ .+++-+.+.+++++.
T Consensus 485 d~lE~--lDP~pEnW---------eGKRGACaG~f~~l~~~~~~~~p~~~~rEVvhllr~~~n-sq~E~mikvvrkwa~ 551 (557)
T KOG3785|consen 485 DELEI--LDPTPENW---------EGKRGACAGLFRQLANHKTDPIPISQMREVVHLLRMKPN-SQCEFMIKVVRKWAE 551 (557)
T ss_pred hHHHc--cCCCcccc---------CCccchHHHHHHHHHcCCCCCCchhHHHHHHHHHHhCCC-chHHHHHHHHHHHHH
Confidence 98887 67777766 466666777777776653333 23334445555555444 345556666666654
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.9e-14 Score=141.44 Aligned_cols=221 Identities=18% Similarity=0.188 Sum_probs=182.3
Q ss_pred HHHccCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHH
Q 002664 620 GFCKSGKVNKAYQLLEEMKTKGHYPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNTVIYSSLIDGFGKVGRIDE 699 (895)
Q Consensus 620 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 699 (895)
.+.-.|+.-.|..-|+..++....++. .|--+..+|....+.++....|+++.+.+ +.++.+|..-...+.-.+++++
T Consensus 335 F~fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~ 412 (606)
T KOG0547|consen 335 FHFLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEE 412 (606)
T ss_pred hhhhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHH
Confidence 345578899999999999987554333 36667778999999999999999999886 4577788888888888899999
Q ss_pred HHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 002664 700 AYLIMEELMQKGLTP-NAYTWNCLLDALVKAEEISEAFVCFQSMKDLKCTPNHVTYSIIINGLCRVRKFNKAFVFWQEMQ 778 (895)
Q Consensus 700 A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 778 (895)
|+.-|++.+. +.| ++..|..+..+..+.+.++++...|++... .+|.-+..|+....++..++++++|.+.|+...
T Consensus 413 A~aDF~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk-kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai 489 (606)
T KOG0547|consen 413 AIADFQKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKK-KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAI 489 (606)
T ss_pred HHHHHHHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHH
Confidence 9999999998 455 788888898889999999999999999987 456666889999999999999999999999998
Q ss_pred HCCCCCC---------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002664 779 KQGFKPN---------TITYTTMISGLAKAGNITEANGLFERFKENGGVP-DSACYNAMMEGLSNANRAMDAYTLFEETR 848 (895)
Q Consensus 779 ~~~~~p~---------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 848 (895)
+ +.|+ +.+...++..- -.+++..|++++.++++ +.| ....|..|+....+.|+.++|+++|++..
T Consensus 490 ~--LE~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e--~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 490 E--LEPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIE--LDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred h--hccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHc--cCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 7 4454 22333333333 34899999999999998 777 56789999999999999999999999876
Q ss_pred HC
Q 002664 849 RK 850 (895)
Q Consensus 849 ~~ 850 (895)
..
T Consensus 565 ~l 566 (606)
T KOG0547|consen 565 QL 566 (606)
T ss_pred HH
Confidence 65
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.1e-12 Score=126.90 Aligned_cols=318 Identities=20% Similarity=0.268 Sum_probs=185.6
Q ss_pred hcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHH--hcCChh-HHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhh
Q 002664 204 TVRESNLMLNLFHQMQELGYEVSVHLFTTLIRVFA--REGRVD-DALFLLDEMKNNAFSVDIVLYNVCIDCFGKVGKVDM 280 (895)
Q Consensus 204 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~-~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 280 (895)
..|+...+.-+|+.|.+.|.+.++..-..+.+.-+ ...+.- .-.+.|-.|.+.| ..+..+| +.|.+.+
T Consensus 127 S~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW--------K~G~vAd 197 (625)
T KOG4422|consen 127 SSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW--------KSGAVAD 197 (625)
T ss_pred hhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc--------ccccHHH
Confidence 56777788888888888888877776666554433 222222 2233444555554 4445555 4454433
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 002664 281 AWKFFHEMKAQGVAPDDVTYTSMIGVLCKSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLFERLKQ 360 (895)
Q Consensus 281 A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 360 (895)
-+|+.. +-...++.+||.++|+--..+.|.+++++........+..+||.+|.+-.-. ...+++.+|+.
T Consensus 198 --L~~E~~-----PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMis 266 (625)
T KOG4422|consen 198 --LLFETL-----PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMIS 266 (625)
T ss_pred --HHHhhc-----CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHH
Confidence 233322 2366789999999999999999999999987777777889999988764322 22788889998
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHH
Q 002664 361 KGCIPSVIAYNSLLTCLGKKGRVTEAMKIFEAMKKDARPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEAGLFPNVMTVN 440 (895)
Q Consensus 361 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 440 (895)
....||..|+|+++.+..+.|+++.|.+. |.+++.+|++.|+.|...+|.
T Consensus 267 qkm~Pnl~TfNalL~c~akfg~F~~ar~a------------------------------alqil~EmKeiGVePsLsSyh 316 (625)
T KOG4422|consen 267 QKMTPNLFTFNALLSCAAKFGKFEDARKA------------------------------ALQILGEMKEIGVEPSLSSYH 316 (625)
T ss_pred hhcCCchHhHHHHHHHHHHhcchHHHHHH------------------------------HHHHHHHHHHhCCCcchhhHH
Confidence 88899999999999999999888776543 334444555555555555555
Q ss_pred HHHHHHHhcCChhH-HHHHHHHhh----hCCCC----CChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCC----Cc---
Q 002664 441 IMVDRLCKAQKLDE-AFSIFEGMD----HKTCT----PDAVTFCSLIDGLGKNGRVDDAYKFYEKMLDTDQ----IP--- 504 (895)
Q Consensus 441 ~l~~~~~~~g~~~~-A~~~~~~~~----~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~--- 504 (895)
.+|..+++.++..+ +..++.++. .+.+. .+..-|...+..|.+..+.+-|.++-.-+..... .|
T Consensus 317 ~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~ 396 (625)
T KOG4422|consen 317 LIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQH 396 (625)
T ss_pred HHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHH
Confidence 55555555444432 222222221 11111 1222333444444455555555544433322110 01
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 002664 505 NAILYTSLIRNFFKHGRKEDGHKIYKEMVQRGCSPDLMLLNTYMDCVFKAGETEKGRALFEEIKAQG 571 (895)
Q Consensus 505 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 571 (895)
...-|..+....|+....+.-...|+.|+-.-+-|+..+...++.+....+.++-...++..+...|
T Consensus 397 ~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~g 463 (625)
T KOG4422|consen 397 RNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYG 463 (625)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhh
Confidence 1112334444555555555556666666555555555555555555555555555555555555443
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.6e-12 Score=123.33 Aligned_cols=357 Identities=14% Similarity=0.207 Sum_probs=183.7
Q ss_pred hHhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCCHHhHHHHHHH
Q 002664 262 IVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGVAPDDVTYTSMIGVLCKSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMG 341 (895)
Q Consensus 262 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 341 (895)
..+|..+|.++|+-...+.|.+++++..+...+.+..++|.+|.+-.-. ...++..+|......||..|+|+++.+
T Consensus 207 ~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl~TfNalL~c 282 (625)
T KOG4422|consen 207 DETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNLFTFNALLSC 282 (625)
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCchHhHHHHHHH
Confidence 3455555555555555555555555555544444555555555443211 114555555555555555555555555
Q ss_pred HHccCCHHH----HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHhc---------CCCCCHHHHHHH
Q 002664 342 YGSVGKFDE----AFSLFERLKQKGCIPSVIAYNSLLTCLGKKGRVTE-AMKIFEAMKK---------DARPNNTTYNVL 407 (895)
Q Consensus 342 ~~~~g~~~~----A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~---------~~~~~~~~~~~l 407 (895)
..+.|+++. |.+++.+|++.|+.|...+|..+|..+++.++..+ |..++.++.. ..|.+...+...
T Consensus 283 ~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~A 362 (625)
T KOG4422|consen 283 AAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSA 362 (625)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHH
Confidence 555555443 23444555566666666666666666655555422 3333333321 123444455555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCC----CCCC---hhhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHH
Q 002664 408 IDMLCKAGNFEDALKFRDAMKEAG----LFPN---VMTVNIMVDRLCKAQKLDEAFSIFEGMDHKTCTPDAVTFCSLIDG 480 (895)
Q Consensus 408 ~~~~~~~g~~~~A~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 480 (895)
...+....+.+-|.++..-+.... +.|+ ...|..+....|+....+....+++.|.-.-.-|+..+...++++
T Consensus 363 M~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA 442 (625)
T KOG4422|consen 363 MSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRA 442 (625)
T ss_pred HHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHH
Confidence 555556666666666544333210 1122 234556667777778888888888888777666777777778887
Q ss_pred HhhcCCHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHc-CCh-h
Q 002664 481 LGKNGRVDDAYKFYEKMLDTDQIPNAILYTSLIRNFFKHGRKEDGHKIYKEMVQRGCSPDLMLLNTYMDCVFKA-GET-E 558 (895)
Q Consensus 481 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~-~ 558 (895)
....|.++-.-+++..++..|...+...... ++..+......|+...-..+-....+. -++ +
T Consensus 443 ~~v~~~~e~ipRiw~D~~~~ght~r~~l~ee----------------il~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e 506 (625)
T KOG4422|consen 443 LDVANRLEVIPRIWKDSKEYGHTFRSDLREE----------------ILMLLARDKLHPLTPEREQLQVAFAKCAADIKE 506 (625)
T ss_pred HhhcCcchhHHHHHHHHHHhhhhhhHHHHHH----------------HHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHH
Confidence 7778888877777777777664433322222 222232222233222111111111100 001 1
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCCHHhHH---HHHHHHHccCChHHHHHHH
Q 002664 559 KGRALFEEIKAQGFVPDVQSYSILIHGLVKAGFAHETDQLFYAMKKQGC-VLDTRAYN---TVVDGFCKSGKVNKAYQLL 634 (895)
Q Consensus 559 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~---~l~~~~~~~g~~~~A~~~~ 634 (895)
.....-.++.+.. ......+..+-.+.+.|..++|.+++..+.+.+- .|-....+ -++..-...++...|+..+
T Consensus 507 ~~e~~~~R~r~~~--~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~l 584 (625)
T KOG4422|consen 507 AYESQPIRQRAQD--WPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVL 584 (625)
T ss_pred HHHhhHHHHHhcc--CChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHH
Confidence 1111112222332 2334445555566777777777777776654321 22333333 3444445566666666666
Q ss_pred HHHHHC
Q 002664 635 EEMKTK 640 (895)
Q Consensus 635 ~~~~~~ 640 (895)
+-|...
T Consensus 585 Q~a~~~ 590 (625)
T KOG4422|consen 585 QLASAF 590 (625)
T ss_pred HHHHHc
Confidence 666554
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.9e-13 Score=134.48 Aligned_cols=219 Identities=17% Similarity=0.183 Sum_probs=111.8
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCCHHHHHHH
Q 002664 589 AGFAHETDQLFYAMKKQGCVLDTRAYNTVVDGFCKSGKVNKAYQLLEEMKTKGHYPTVVTYGSVIDGLAKIDRLDEAYML 668 (895)
Q Consensus 589 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~ 668 (895)
.|+.-.|...|+..++....++. .|-.+..+|....+.++-.+.|.+..+.+.. ++.+|..-.+++.-.+++++|..-
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aD 416 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIAD 416 (606)
T ss_pred cCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHH
Confidence 34455555555555544322221 1444445555555555555555555554433 444555555555555566666666
Q ss_pred HHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 002664 669 FEEAKSKGIELNTVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNAYTWNCLLDALVKAEEISEAFVCFQSMKDLKCT 748 (895)
Q Consensus 669 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 748 (895)
|++++... +.+...|..+.-+..+.++++++...|++..++ ++..+..|+....++..++++++|.+.|+..++....
T Consensus 417 F~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~ 494 (606)
T KOG0547|consen 417 FQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPR 494 (606)
T ss_pred HHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccc
Confidence 66655543 223444444444445555666666666665553 3445555555556666666666666666655542211
Q ss_pred -----CCHHHHH--HHHHHHHhcCCHhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002664 749 -----PNHVTYS--IIINGLCRVRKFNKAFVFWQEMQKQGFKPN-TITYTTMISGLAKAGNITEANGLFERFKE 814 (895)
Q Consensus 749 -----p~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 814 (895)
.+..++- .++. +.-.+++..|..++.++.+ +.|. ...|..|...-...|+.++|+++|++...
T Consensus 495 ~~~~~v~~~plV~Ka~l~-~qwk~d~~~a~~Ll~KA~e--~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 495 EHLIIVNAAPLVHKALLV-LQWKEDINQAENLLRKAIE--LDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred cccccccchhhhhhhHhh-hchhhhHHHHHHHHHHHHc--cCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 0111111 1111 1122566666666666665 3443 23566666666666666666666666554
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.69 E-value=3e-11 Score=127.85 Aligned_cols=710 Identities=14% Similarity=0.063 Sum_probs=356.7
Q ss_pred CCCCCHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHH
Q 002664 117 DQAHSLEAYNSLLMVMAVSKNFEPLEEILGEMSLAGIGPTNNTCIELVVSCVKSKMLREAFDIIQTMRKFKFRPAFTAYT 196 (895)
Q Consensus 117 ~~~~~~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 196 (895)
+..++..+|..++.-|+..|+.+.|- +|.-|..+..+.+...++.++.+....++.+.+. .|...+|.
T Consensus 20 gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDtyt 87 (1088)
T KOG4318|consen 20 GILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADTYT 87 (1088)
T ss_pred cCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhHHH
Confidence 44556689999999999999999998 9999998889999999999999998888887764 67889999
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHH-------cCCCcCH--------------HHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 002664 197 TLIGALATVRESNLMLNLFHQMQE-------LGYEVSV--------------HLFTTLIRVFAREGRVDDALFLLDEMKN 255 (895)
Q Consensus 197 ~l~~~~~~~~~~~~a~~~~~~~~~-------~~~~~~~--------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 255 (895)
.|..+|...|+......+-+.+.. .|+-... ..-...+....-.|-++.+++++..+..
T Consensus 88 ~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pv 167 (1088)
T KOG4318|consen 88 NLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPV 167 (1088)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCc
Confidence 999999999987663322222221 1111000 1112233444455556666666555432
Q ss_pred CCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCCHHhH
Q 002664 256 NAFSVDIVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGVAPDDVTYTSMIGVLCKSKRLEEAVAMFEQMDRNREVPCAYAY 335 (895)
Q Consensus 256 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 335 (895)
.. ... ++...++-+.... .-.+++....+...-.|++.+|..++.+-...|+.+.|..++.+|.+.|...+..-|
T Consensus 168 sa-~~~--p~~vfLrqnv~~n--tpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyF 242 (1088)
T KOG4318|consen 168 SA-WNA--PFQVFLRQNVVDN--TPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYF 242 (1088)
T ss_pred cc-ccc--hHHHHHHHhccCC--chHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccc
Confidence 21 011 1111122222222 222333332222211589999999999999999999999999999999988777777
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 002664 336 NTMIMGYGSVGKFDEAFSLFERLKQKGCIPSVIAYNSLLTCLGKKGRVTEAMKIFEAMKKDARPNNTTYNVLIDMLCKAG 415 (895)
Q Consensus 336 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 415 (895)
-.|+.+ .++..-+..++.-|.+.|+.|+..|+...+..+..+|....+.. ..+....+.+-...-.-.|
T Consensus 243 wpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e--------~sq~~hg~tAavrsaa~rg 311 (1088)
T KOG4318|consen 243 WPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEE--------GSQLAHGFTAAVRSAACRG 311 (1088)
T ss_pred hhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhccc--------ccchhhhhhHHHHHHHhcc
Confidence 677655 88888999999999999999999999877777766555222211 1222222222222222223
Q ss_pred -----CHHHH-----HHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhhhCC--CC-CChhhHHHHHHHHh
Q 002664 416 -----NFEDA-----LKFRDAMKEAGLFPNVMTVNIMVDRLCKAQKLDEAFSIFEGMDHKT--CT-PDAVTFCSLIDGLG 482 (895)
Q Consensus 416 -----~~~~A-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~-~~~~~~~~l~~~~~ 482 (895)
..+.- ...+.+..-.|+......|. +..-+...|+-++..++-..+..-. .. .++..+..++.-|.
T Consensus 312 ~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws-~c~~l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyF 390 (1088)
T KOG4318|consen 312 LLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWS-MCEKLRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYF 390 (1088)
T ss_pred cHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHH-HHHHHHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHH
Confidence 11111 11111211223322223333 2223334677677666665554321 11 12334444444443
Q ss_pred hcCC--HHHHHHHHHHHHhCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCC-------CCHhhHHHHHH
Q 002664 483 KNGR--VDDAYKFYEKMLDTDQIPNAILYTSLIRNFFKHGRKEDGHKIYKEMVQ----RGCS-------PDLMLLNTYMD 549 (895)
Q Consensus 483 ~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~-------~~~~~~~~l~~ 549 (895)
+.-+ ..+-.....+.++.. .+....-.+.....+. +...+..-+..+.. +... +-....+.++.
T Consensus 391 rr~e~~~~~~i~~~~qgls~~--l~se~tp~vsell~~l-rkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l 467 (1088)
T KOG4318|consen 391 RRIERHICSRIYYAGQGLSLN--LNSEDTPRVSELLENL-RKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHL 467 (1088)
T ss_pred HHHHhhHHHHHHHHHHHHHhh--hchhhhHHHHHHHHHh-CcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHH
Confidence 3211 111111111111110 0111111111111111 11112211111110 0001 11123334444
Q ss_pred HHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCCCHHhHHHHHHHHHccCCh
Q 002664 550 CVFKAGETEKGRALFEEIKAQGFVPDVQSYSILIHGLVKAGFAHETDQLFYAMKKQ--GCVLDTRAYNTVVDGFCKSGKV 627 (895)
Q Consensus 550 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~ 627 (895)
.++..-+..+++..-+.....-+. ..|..|++.++.....+.|..+..+.... .+..|..-+..+.+...+.+..
T Consensus 468 ~l~se~n~lK~l~~~ekye~~lf~---g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l 544 (1088)
T KOG4318|consen 468 TLNSEYNKLKILCDEEKYEDLLFA---GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAIL 544 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh---hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHH
Confidence 555555555555444433332111 45667777777777777777766665432 1234455566677777777777
Q ss_pred HHHHHHHHHHHHCCCC-CC-HHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHH
Q 002664 628 NKAYQLLEEMKTKGHY-PT-VVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNTVIYSSLIDGFGKVGRIDEAYLIME 705 (895)
Q Consensus 628 ~~A~~~~~~~~~~~~~-p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 705 (895)
..+..++.++.+.-.. |+ ..++-.+.+.....|+.+.-.++++-+...|+.-+ .-++....+.++...|.+.++
T Consensus 545 ~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~et----gPl~~vhLrkdd~s~a~ea~e 620 (1088)
T KOG4318|consen 545 YDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSET----GPLWMVHLRKDDQSAAQEAPE 620 (1088)
T ss_pred HHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhc----ccceEEEeeccchhhhhhcch
Confidence 7777777777653111 11 22333444455556666666666666555543221 112222233334444433333
Q ss_pred HHHHCCCCCCHHHHHHHHH---------------------HHHhcCCHHHHHHHHHHH-----------HhcC-CCC---
Q 002664 706 ELMQKGLTPNAYTWNCLLD---------------------ALVKAEEISEAFVCFQSM-----------KDLK-CTP--- 749 (895)
Q Consensus 706 ~~~~~~~~p~~~~~~~l~~---------------------~~~~~g~~~~A~~~~~~~-----------~~~~-~~p--- 749 (895)
..... .+|.+.....+.. .|.+.|++.+|-++.+.= .+.| +.|
T Consensus 621 ~~~qk-yk~~P~~~e~lcrlv~ke~td~~qk~mDls~~iq~f~k~g~~~~a~di~etpG~r~r~~RDr~~de~e~~~lEl 699 (1088)
T KOG4318|consen 621 PEEQK-YKPYPKDLEGLCRLVYKETTDSPQKTMDLSIPIQKFEKLGSCVDAGDITETPGVRCRNGRDRDTDEGEIVPLEL 699 (1088)
T ss_pred HHHHH-hcCChHHHHHHHHHHHhhccccHHHHHhhcchhHHHHhcccccchhhccccCcccccCCCccccccCccccHHH
Confidence 32221 1111111111111 133444444333332210 0000 000
Q ss_pred ------CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHC-CCCC
Q 002664 750 ------NHVTYSIIINGLCRVRKFNKAFVFWQEMQKQGFKPNTITYTTMISGLAKAG---NITEANGLFERFKEN-GGVP 819 (895)
Q Consensus 750 ------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~-~~~p 819 (895)
+......++..|.+.|+++.|..+|.++. +.|+..+...|...+.+.. ++-++....++..+. ...|
T Consensus 700 l~elt~~lg~~dRLL~sy~~~g~~erA~glwnK~Q---V~k~~~~l~~LAsIlr~~n~evdvPe~q~e~ekas~~~~~f~ 776 (1088)
T KOG4318|consen 700 LLELTHELGKNDRLLQSYLEEGRIERASGLWNKDQ---VSKSPMKLFHLASILRRMNEEVDVPEIQAETEKASELRTLFP 776 (1088)
T ss_pred HHHHHhHhHHHHHHHHHHHhhhHHHHHHhHHhhCc---CCcchHHHHHHHHHHHhhchhccchhHHHHHHHHHhcccccc
Confidence 00112235556667777777777777765 5566665555555544332 333444444444331 1112
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc
Q 002664 820 -DSACYNAMMEGLSNANRAMDAYTLFEETRRKGFNIHTKTCVILLDALHKA 869 (895)
Q Consensus 820 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 869 (895)
+...|..-+....+....+.|.+.+++..+...+.+...+..+.+++...
T Consensus 777 ttt~~~~~~a~~a~q~~qkkaAkk~f~r~eeq~~v~tad~ls~f~k~L~~n 827 (1088)
T KOG4318|consen 777 TTTCYYEGYAFFATQTEQKKAAKKCFERLEEQLTVSTADELSDFLKCLVKN 827 (1088)
T ss_pred cchHhhhhhHHHHhhHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhc
Confidence 22223333333344444445666666666555455555555555555443
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.3e-09 Score=111.70 Aligned_cols=319 Identities=13% Similarity=0.119 Sum_probs=192.1
Q ss_pred cCCHHHHHHHHHHHHHcCCCCC------HhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhc
Q 002664 519 HGRKEDGHKIYKEMVQRGCSPD------LMLLNTYMDCVFKAGETEKGRALFEEIKAQGFVPD---VQSYSILIHGLVKA 589 (895)
Q Consensus 519 ~~~~~~A~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~ 589 (895)
.|+..+-...|.++... +.|. ...+..+...|...|+.+.|..+|++..+-.++.- ..+|..-...-.+.
T Consensus 360 e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh 438 (835)
T KOG2047|consen 360 EGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRH 438 (835)
T ss_pred cCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhh
Confidence 44455555555555443 2221 22344555555666666666666666555432211 12233333333444
Q ss_pred CChHHHHHHHHHHHHcCC-----------------CCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHhHHHH
Q 002664 590 GFAHETDQLFYAMKKQGC-----------------VLDTRAYNTVVDGFCKSGKVNKAYQLLEEMKTKGHYPTVVTYGSV 652 (895)
Q Consensus 590 g~~~~A~~~~~~~~~~~~-----------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 652 (895)
.+++.|..+++......- ..+...|...++.--..|-++....+++++++..+. ++......
T Consensus 439 ~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~Ny 517 (835)
T KOG2047|consen 439 ENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINY 517 (835)
T ss_pred hhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHH
Confidence 555555555554432110 113456666677667778889999999999887554 44443334
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCcCH-HHHHHHHHHHHc---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH--H
Q 002664 653 IDGLAKIDRLDEAYMLFEEAKSKGIELNT-VIYSSLIDGFGK---VGRIDEAYLIMEELMQKGLTPNAYTWNCLLDA--L 726 (895)
Q Consensus 653 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~--~ 726 (895)
...+....-++++.+.+++-+..--.|+. .+|+..+..+.+ ..+++.|..+|+++++ |.+|...-+..|+.+ -
T Consensus 518 AmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lE 596 (835)
T KOG2047|consen 518 AMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLE 596 (835)
T ss_pred HHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHH
Confidence 44455666788899888877665333443 366666555443 2469999999999999 666643333333322 3
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCH--HHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHH---HHHHHHhcCC
Q 002664 727 VKAEEISEAFVCFQSMKDLKCTPNH--VTYSIIINGLCRVRKFNKAFVFWQEMQKQGFKPNTITYTT---MISGLAKAGN 801 (895)
Q Consensus 727 ~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~---l~~~~~~~g~ 801 (895)
.+.|-...|+.+++++.. ++++.. ..|+..|.--...=-+..-.++|+++.+. -|+..+-.. ....=++.|.
T Consensus 597 Ee~GLar~amsiyerat~-~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~--Lp~~~~r~mclrFAdlEtklGE 673 (835)
T KOG2047|consen 597 EEHGLARHAMSIYERATS-AVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES--LPDSKAREMCLRFADLETKLGE 673 (835)
T ss_pred HHhhHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh--CChHHHHHHHHHHHHHhhhhhh
Confidence 356888899999999876 334432 46776665433333344556788888873 566544333 3334567899
Q ss_pred HHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHH
Q 002664 802 ITEANGLFERFKENGGVP--DSACYNAMMEGLSNANRAMDAYTLF 844 (895)
Q Consensus 802 ~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~ 844 (895)
.+.|..++.-..+- ..| +...|...=..-.++|+-+.-.+++
T Consensus 674 idRARaIya~~sq~-~dPr~~~~fW~twk~FEvrHGnedT~keML 717 (835)
T KOG2047|consen 674 IDRARAIYAHGSQI-CDPRVTTEFWDTWKEFEVRHGNEDTYKEML 717 (835)
T ss_pred HHHHHHHHHhhhhc-CCCcCChHHHHHHHHHHHhcCCHHHHHHHH
Confidence 99999999888774 344 6788888888889999955444443
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.68 E-value=7.1e-12 Score=122.91 Aligned_cols=293 Identities=9% Similarity=0.064 Sum_probs=173.7
Q ss_pred HHHHhhcCCHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CCHhhHHHHHHHHHHcC
Q 002664 478 IDGLGKNGRVDDAYKFYEKMLDTDQIPNAILYTSLIRNFFKHGRKEDGHKIYKEMVQRGCS--PDLMLLNTYMDCVFKAG 555 (895)
Q Consensus 478 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~ 555 (895)
..++....+.+++..-+......|.+.+...-+..+.+.....++++|+.+|+++.+..+- .|..+|..++. .+..
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LY--v~~~ 311 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLY--VKND 311 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHH--HHhh
Confidence 3344444556666666666666655545544455555555666666666666666655210 13334443332 1211
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHH
Q 002664 556 ETEKGRALFEEIKAQGFVPDVQSYSILIHGLVKAGFAHETDQLFYAMKKQGCVLDTRAYNTVVDGFCKSGKVNKAYQLLE 635 (895)
Q Consensus 556 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 635 (895)
+.. +..+.+-.-.--+--+.|..++.+.|.-.++.++|...|++.++.+ +....+|+.+..-|....+...|++.++
T Consensus 312 ~sk--Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYR 388 (559)
T KOG1155|consen 312 KSK--LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYR 388 (559)
T ss_pred hHH--HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHH
Confidence 111 1111111110001233456666677777777777777777777764 3345667777777777777777777777
Q ss_pred HHHHCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC
Q 002664 636 EMKTKGHYPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNTVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPN 715 (895)
Q Consensus 636 ~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 715 (895)
.+++.++. |...|..+.++|.-.+.+.=|+-+|+++.+.. |.|...|.+|+.+|.+.+++++|++.|......|-. +
T Consensus 389 rAvdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e 465 (559)
T KOG1155|consen 389 RAVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-E 465 (559)
T ss_pred HHHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-c
Confidence 77766433 66677777777777777777777777777653 557777777777777777777777777777775422 4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHh----cCCCCC--HHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 002664 716 AYTWNCLLDALVKAEEISEAFVCFQSMKD----LKCTPN--HVTYSIIINGLCRVRKFNKAFVFWQEMQ 778 (895)
Q Consensus 716 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 778 (895)
...+..|+..|-+.++.++|...|++.++ .|...+ ..+...|..-+.+.+++++|..+.....
T Consensus 466 ~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 466 GSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVL 534 (559)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHh
Confidence 56677777777777777777777776654 122222 1222234555566666666665554443
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.1e-10 Score=119.81 Aligned_cols=591 Identities=14% Similarity=0.112 Sum_probs=349.7
Q ss_pred hcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCCHHHHHH
Q 002664 274 KVGKVDMAWKFFHEMKAQGVAPDDVTYTSMIGVLCKSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFS 353 (895)
Q Consensus 274 ~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 353 (895)
..+++...+++.+.+.+. .+-...|....+-.++..|+-++|.......+..++. +.++|..++..+-...++++|++
T Consensus 19 E~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~dK~Y~eaiK 96 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSDKKYDEAIK 96 (700)
T ss_pred HHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhhhhHHHHHH
Confidence 456666666666666653 2223344444555566677777777777777776665 67777777777777777777777
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-C
Q 002664 354 LFERLKQKGCIPSVIAYNSLLTCLGKKGRVTEAMKIFEAMKKDARPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEAG-L 432 (895)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~ 432 (895)
.|..+...+. .|...+.-+.-.-.+.|+++.....-....+..|.....|..++.++.-.|++..|..+++...+.. -
T Consensus 97 cy~nAl~~~~-dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~ 175 (700)
T KOG1156|consen 97 CYRNALKIEK-DNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNT 175 (700)
T ss_pred HHHHHHhcCC-CcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 7777777653 2566666666666777777777777777777777777788888888888888888888887776543 2
Q ss_pred CCChhhHHHH------HHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcch
Q 002664 433 FPNVMTVNIM------VDRLCKAQKLDEAFSIFEGMDHKTCTPDAVTFCSLIDGLGKNGRVDDAYKFYEKMLDTDQIPNA 506 (895)
Q Consensus 433 ~~~~~~~~~l------~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 506 (895)
.|+...+... .......|.+++|.+.+...... +......-..-...+.+.+++++|..+|..++...| .+.
T Consensus 176 ~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnP-dn~ 253 (700)
T KOG1156|consen 176 SPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNP-DNL 253 (700)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCc-hhH
Confidence 3555444332 22345667788888777654333 111222334456677888999999999999988753 244
Q ss_pred hhHHHHHHHHHhcCCHHHHH-HHHHHHHHcCCCCCHhhHHHH-HHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 002664 507 ILYTSLIRNFFKHGRKEDGH-KIYKEMVQRGCSPDLMLLNTY-MDCVFKAGETEKGRALFEEIKAQGFVPDVQSYSILIH 584 (895)
Q Consensus 507 ~~~~~l~~~~~~~~~~~~A~-~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 584 (895)
..|..+..++.+..+..++. .+|....+. .|-......+ +.......-.+..-.++......|+++-... +..
T Consensus 254 ~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~d---l~S 328 (700)
T KOG1156|consen 254 DYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKD---LRS 328 (700)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhh---hHH
Confidence 44445555554444444454 555555443 2211111111 1111112222334445566666665443222 222
Q ss_pred HHHhcCChHHHHHHHHHHH--------HcC----------CCCCHHhH--HHHHHHHHccCChHHHHHHHHHHHHCCCCC
Q 002664 585 GLVKAGFAHETDQLFYAMK--------KQG----------CVLDTRAY--NTVVDGFCKSGKVNKAYQLLEEMKTKGHYP 644 (895)
Q Consensus 585 ~~~~~g~~~~A~~~~~~~~--------~~~----------~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 644 (895)
.|-.-.... +++++. ..| -+|.+..| ..++..|-..|+++.|..+++..+.+ .|
T Consensus 329 Lyk~p~k~~----~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TP 402 (700)
T KOG1156|consen 329 LYKDPEKVA----FLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TP 402 (700)
T ss_pred HHhchhHhH----HHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--Cc
Confidence 222111111 222221 110 14555444 45778888999999999999999876 55
Q ss_pred CHH-hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC--C----HH
Q 002664 645 TVV-TYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNTVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTP--N----AY 717 (895)
Q Consensus 645 ~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~----~~ 717 (895)
+.. .|..-..++...|.+++|..+++++.+.+ .+|..+-..-+.-..+.++.++|.++.....+.|... + ..
T Consensus 403 TliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqc 481 (700)
T KOG1156|consen 403 TLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQC 481 (700)
T ss_pred hHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhh
Confidence 544 56666788899999999999999999886 4566555566667778899999999999998876411 1 11
Q ss_pred HHHHH--HHHHHhcCCHHHHHHHHHHHHhc-----CCCCCHHHHH----------HHHHHHHhc-------CCHhHHHHH
Q 002664 718 TWNCL--LDALVKAEEISEAFVCFQSMKDL-----KCTPNHVTYS----------IIINGLCRV-------RKFNKAFVF 773 (895)
Q Consensus 718 ~~~~l--~~~~~~~g~~~~A~~~~~~~~~~-----~~~p~~~~~~----------~l~~~~~~~-------g~~~~A~~~ 773 (895)
.|-.+ +.+|.+.|++..|+.-|..+.+. .-.-|..||. -|+...-.. .-...|+++
T Consensus 482 mWf~~E~g~ay~r~~k~g~ALKkfh~i~k~~~~~~~dqfDfhtyc~rk~tlrsYv~ll~~~d~L~~~p~y~~Aa~~Ai~i 561 (700)
T KOG1156|consen 482 MWFQLEDGEAYLRQNKLGLALKKFHEIEKHYKTWSEDQFDFHTYCMRKGTLRSYVELLEWEDNLRSSPYYLRAAKGAIEI 561 (700)
T ss_pred HHHhHhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhHHHHHHhcCcHHHHHHHHHHHHhhccChHHHHHHHHHHHH
Confidence 22222 45677888888887766655431 1123444432 222211100 012446677
Q ss_pred HHHHHHCC-CC-CCHHHHHHHH----HHHHh-cCCHHHHHHHHHHHHH---------CCCC--CCHHHHHHHHHHHHhcC
Q 002664 774 WQEMQKQG-FK-PNTITYTTMI----SGLAK-AGNITEANGLFERFKE---------NGGV--PDSACYNAMMEGLSNAN 835 (895)
Q Consensus 774 ~~~~~~~~-~~-p~~~~~~~l~----~~~~~-~g~~~~A~~~~~~~~~---------~~~~--p~~~~~~~l~~~~~~~g 835 (895)
|-.|.+.. .. +.......+- ....+ ..+..+|.+.-+.+.+ .|.+ ||.. -.+..+.+..
T Consensus 562 Yl~l~d~p~~~~~~~~~~~~ms~e~kk~~~k~rk~~kk~~~e~~~~~~~~~~~~~s~~~~~~~~d~~---~~gekL~~t~ 638 (700)
T KOG1156|consen 562 YLRLHDSPNMYTNKADEIEKMSDEEKKIKKKQRKAKKKAKKEAKKKKDKKKKEAKSQSGKPVDIDED---PFGEKLLKTE 638 (700)
T ss_pred HHHHhcCcccccccchhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCc---chhhhHhhcC
Confidence 77776542 00 1111111111 11101 1122233332222211 1222 3333 4455666655
Q ss_pred C-HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 002664 836 R-AMDAYTLFEETRRKGFNIHTKTCVILLDALHKAECLEQAAIVGAVLRET 885 (895)
Q Consensus 836 ~-~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~l~~~ 885 (895)
+ .++|.+++..+...+ +....++..-...|.+.|++--|....+.....
T Consensus 639 ~Pl~ea~kf~~~l~~~~-~~~~~~~iL~~ely~rk~k~~l~~~~~~~~~~~ 688 (700)
T KOG1156|consen 639 DPLEEARKFLPNLQHKG-KEKGETYILSFELYYRKGKFLLALACLNNAEGI 688 (700)
T ss_pred ChHHHHHHHHHHHHHhc-ccchhhhhhhHHHHHHHHHHHHHHHHHHhhhhh
Confidence 4 578999999988885 778888888889999999999988866655443
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.8e-12 Score=130.40 Aligned_cols=502 Identities=11% Similarity=0.033 Sum_probs=295.6
Q ss_pred HhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 002664 333 YAYNTMIMGYGSVGKFDEAFSLFERLKQKGCIPSVIAYNSLLTCLGKKGRVTEAMKIFEAMKKDARPNNTTYNVLIDMLC 412 (895)
Q Consensus 333 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 412 (895)
.-+..+.+-+..+.++.-|.-+-+++...+. |+.-...+++++.-.|+++.|..+...- +....+..+....+.++.
T Consensus 17 ~~~~~~~r~~l~q~~y~~a~f~adkV~~l~~--dp~d~~~~aq~l~~~~~y~ra~~lit~~-~le~~d~~cryL~~~~l~ 93 (611)
T KOG1173|consen 17 EKYRRLVRDALMQHRYKTALFWADKVAGLTN--DPADIYWLAQVLYLGRQYERAAHLITTY-KLEKRDIACRYLAAKCLV 93 (611)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHhccC--ChHHHHHHHHHHHhhhHHHHHHHHHHHh-hhhhhhHHHHHHHHHHHH
Confidence 3344444445555566666666666655543 3334445666677777777766665543 223445666666777777
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhhcCCHHHHHH
Q 002664 413 KAGNFEDALKFRDAMKEAGLFPNVMTVNIMVDRLCKAQKLDEAFSIFEGMDHKTCTPDAVTFCSLIDGLGKNGRVDDAYK 492 (895)
Q Consensus 413 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 492 (895)
+..++++|..++..... .-+...|..-- + ...-..+.+. +.. +.......+..-+..|....+.++|..
T Consensus 94 ~lk~~~~al~vl~~~~~---~~~~f~yy~~~-~-~~~l~~n~~~----~~~--~~~~essic~lRgk~y~al~n~~~ar~ 162 (611)
T KOG1173|consen 94 KLKEWDQALLVLGRGHV---ETNPFSYYEKD-A-ANTLELNSAG----EDL--MINLESSICYLRGKVYVALDNREEARD 162 (611)
T ss_pred HHHHHHHHHHHhcccch---hhcchhhcchh-h-hceeccCccc----ccc--cccchhceeeeeeehhhhhccHHHHHH
Confidence 77777777776653210 01111110000 0 0000001111 000 011122223333444555666777777
Q ss_pred HHHHHHhCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC----CCCHhhHHHHHHHH-HHcCChhHHHHHHHHH
Q 002664 493 FYEKMLDTDQIPNAILYTSLIRNFFKHGRKEDGHKIYKEMVQRGC----SPDLMLLNTYMDCV-FKAGETEKGRALFEEI 567 (895)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~~~~~l~~~~-~~~~~~~~a~~~~~~~ 567 (895)
.|.+++..++. ....+..++....- .+.+.++.+..... .-+......+.... ++.-+ +.....-.+.
T Consensus 163 ~Y~~Al~~D~~-c~Ea~~~lvs~~ml-----t~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n-~~~~~r~~~~ 235 (611)
T KOG1173|consen 163 KYKEALLADAK-CFEAFEKLVSAHML-----TAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRN-EESLTRNEDE 235 (611)
T ss_pred HHHHHHhcchh-hHHHHHHHHHHHhc-----chhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhcc-ccccccCchh
Confidence 77777765432 33333333333211 11111121111100 01111111111111 00000 0000000001
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHH
Q 002664 568 KAQGFVPDVQSYSILIHGLVKAGFAHETDQLFYAMKKQGCVLDTRAYNTVVDGFCKSGKVNKAYQLLEEMKTKGHYPTVV 647 (895)
Q Consensus 568 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 647 (895)
.-.+...+.........-+...+++.+..++++.+.+.. ++....+..-|.++...|+..+-..+=.++.+.- +....
T Consensus 236 sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~ 313 (611)
T KOG1173|consen 236 SLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKAL 313 (611)
T ss_pred hhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCc
Confidence 111223345555556666777888899999988888875 5666666666778888888777777777777763 33667
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHH
Q 002664 648 TYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNTVIYSSLIDGFGKVGRIDEAYLIMEELMQK--GLTPNAYTWNCLLDA 725 (895)
Q Consensus 648 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~~~~~~~l~~~ 725 (895)
+|-++.--|...|+..+|+.+|.++...+ +.=...|..++..|.-.|.-++|+..|..+.+. |.. -+..| ++.-
T Consensus 314 sW~aVg~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~h-lP~LY--lgme 389 (611)
T KOG1173|consen 314 SWFAVGCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCH-LPSLY--LGME 389 (611)
T ss_pred chhhHHHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCc-chHHH--HHHH
Confidence 88888888888899999999998887654 223457888888888889999999988888772 211 22233 4445
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHC--CCCC----CHHHHHHHHHHHHhc
Q 002664 726 LVKAEEISEAFVCFQSMKDLKCTPNHVTYSIIINGLCRVRKFNKAFVFWQEMQKQ--GFKP----NTITYTTMISGLAKA 799 (895)
Q Consensus 726 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p----~~~~~~~l~~~~~~~ 799 (895)
|...++++-|.+.|.+..... |.|+..++-+.-.....+.+.+|..+|+..+.. ...+ -..+++.|+.++.+.
T Consensus 390 y~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl 468 (611)
T KOG1173|consen 390 YMRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKL 468 (611)
T ss_pred HHHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHH
Confidence 777889999999998888732 446677777777777788899999998887732 1111 234688889999999
Q ss_pred CCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-hhHHHHHHHH
Q 002664 800 GNITEANGLFERFKENGGVP-DSACYNAMMEGLSNANRAMDAYTLFEETRRKGFNIHT-KTCVILLDAL 866 (895)
Q Consensus 800 g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~ 866 (895)
+.+++|+..+++.+. ..| +..++..++-.|...|+.+.|+..|.+.+.. .|+. .+.-.|..+.
T Consensus 469 ~~~~eAI~~~q~aL~--l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l--~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 469 NKYEEAIDYYQKALL--LSPKDASTHASIGYIYHLLGNLDKAIDHFHKALAL--KPDNIFISELLKLAI 533 (611)
T ss_pred hhHHHHHHHHHHHHH--cCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhc--CCccHHHHHHHHHHH
Confidence 999999999999988 555 7888999999999999999999999998877 4444 3333344333
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.67 E-value=2e-12 Score=126.74 Aligned_cols=293 Identities=15% Similarity=0.092 Sum_probs=166.5
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC--CChHhHHHHHHHHHhcCC
Q 002664 200 GALATVRESNLMLNLFHQMQELGYEVSVHLFTTLIRVFAREGRVDDALFLLDEMKNNAFS--VDIVLYNVCIDCFGKVGK 277 (895)
Q Consensus 200 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~ 277 (895)
.++......+++++-.+...+.|++.+...-+..+.+...+.++++|+.+|+++.+.++- .|..+|+.++-+--...+
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~sk 314 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSK 314 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHH
Confidence 444444556666666666666666665555555666666666666666666666665321 244455544322211111
Q ss_pred hh-hHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHH
Q 002664 278 VD-MAWKFFHEMKAQGVAPDDVTYTSMIGVLCKSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLFE 356 (895)
Q Consensus 278 ~~-~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 356 (895)
+. -|..+++ . ... -+.|+-++++-|.-.++.++|+.+|++.++.++. ...+|+.+++-|....+...|.+.++
T Consensus 315 Ls~LA~~v~~-i--dKy--R~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYR 388 (559)
T KOG1155|consen 315 LSYLAQNVSN-I--DKY--RPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYR 388 (559)
T ss_pred HHHHHHHHHH-h--ccC--CccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHH
Confidence 11 1111111 0 112 2345555566666666666666666666666654 55666666666666666666666666
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh
Q 002664 357 RLKQKGCIPSVIAYNSLLTCLGKKGRVTEAMKIFEAMKKDARPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEAGLFPNV 436 (895)
Q Consensus 357 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 436 (895)
.+++.+ +-|-.+|..|+++|.-.+...-|+-.|++...-.|.|...|.+|+.+|.+.++.++|++.|......|- .+.
T Consensus 389 rAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d-te~ 466 (559)
T KOG1155|consen 389 RAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD-TEG 466 (559)
T ss_pred HHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc-cch
Confidence 666654 235666666666666666666666666666666666666666666666666666666666666665442 234
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHhhhC----CC-CC-ChhhHHHHHHHHhhcCCHHHHHHHHHHHHhC
Q 002664 437 MTVNIMVDRLCKAQKLDEAFSIFEGMDHK----TC-TP-DAVTFCSLIDGLGKNGRVDDAYKFYEKMLDT 500 (895)
Q Consensus 437 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 500 (895)
..+..+.+.|-+.++.++|...|++.++. |. .| ...+..-|...+.+.+++++|..+......-
T Consensus 467 ~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 467 SALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG 536 (559)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC
Confidence 55666666666666666666666655442 11 11 1222333555566666666666655555443
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.7e-14 Score=148.15 Aligned_cols=288 Identities=14% Similarity=0.101 Sum_probs=218.6
Q ss_pred CChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC-C-cCHHHHHHHHHHHHhcCChhHHHH
Q 002664 171 KMLREAFDIIQTMRKFKFRPAFTAYTTLIGALATVRESNLMLNLFHQMQELGY-E-VSVHLFTTLIRVFAREGRVDDALF 248 (895)
Q Consensus 171 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~-~~~~~~~~l~~~~~~~g~~~~A~~ 248 (895)
=+.++|...|.++...-. -+..+...++.+|...++|++|..+|+.+.+... . -+.++|...+.-+ .+ +-++.
T Consensus 333 y~~~~A~~~~~klp~h~~-nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHL---q~-~v~Ls 407 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSHHY-NTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHL---QD-EVALS 407 (638)
T ss_pred HHHHHHHHHHHhhHHhcC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHH---Hh-hHHHH
Confidence 346788888888655532 2236667788888888888888888888877421 1 1345566555433 22 22333
Q ss_pred HHH-HHHhCCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHhhC
Q 002664 249 LLD-EMKNNAFSVDIVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGVAP-DDVTYTSMIGVLCKSKRLEEAVAMFEQMDRN 326 (895)
Q Consensus 249 ~~~-~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 326 (895)
++. .+.+.. +..+.+|.+++.+|.-+++.+.|++.|++.+.. .| ...+|+.+++-+.....+|.|...|+..+..
T Consensus 408 ~Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~ 484 (638)
T KOG1126|consen 408 YLAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV 484 (638)
T ss_pred HHHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC
Confidence 333 233332 556788889999999999999999999988875 44 6778888888888889999999999998887
Q ss_pred CCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHH
Q 002664 327 REVPCAYAYNTMIMGYGSVGKFDEAFSLFERLKQKGCIPSVIAYNSLLTCLGKKGRVTEAMKIFEAMKKDARPNNTTYNV 406 (895)
Q Consensus 327 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 406 (895)
++. +-.+|..++..|.++++++.|+-.|+++.+.++. +.+....++..+.+.|+.++|+++|+++....|.|+..-..
T Consensus 485 ~~r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~ 562 (638)
T KOG1126|consen 485 DPR-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYH 562 (638)
T ss_pred Cch-hhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHH
Confidence 665 6778888888999999999999999998887643 67777788888888999999999999988888888888888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCC
Q 002664 407 LIDMLCKAGNFEDALKFRDAMKEAGLFPNVMTVNIMVDRLCKAQKLDEAFSIFEGMDHKTCTP 469 (895)
Q Consensus 407 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 469 (895)
.+..+...+++++|+..++++++. ++.+...+..++..|.+.|+.+.|+.-|.-+.....++
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG 624 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence 888888889999999999998875 22345667778888888999999988888777664443
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.1e-14 Score=147.51 Aligned_cols=291 Identities=14% Similarity=0.094 Sum_probs=241.9
Q ss_pred ChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC--CCChHhHHHHHHHHHhcCChhhHHHH
Q 002664 207 ESNLMLNLFHQMQELGYEVSVHLFTTLIRVFAREGRVDDALFLLDEMKNNAF--SVDIVLYNVCIDCFGKVGKVDMAWKF 284 (895)
Q Consensus 207 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~ 284 (895)
+..+|...|....+. ...+..+...++++|...+++++|..+|+.+.+... ..+..+|...+.-+ .+.-+---+
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHL---q~~v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHL---QDEVALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHH---HhhHHHHHH
Confidence 557899999985554 445668889999999999999999999999987642 23566777765433 222222223
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Q 002664 285 FHEMKAQGVAPDDVTYTSMIGVLCKSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLFERLKQKGCI 364 (895)
Q Consensus 285 ~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 364 (895)
-+++++.. +-.+.+|-+++++|.-+++.+.|++.|++.++.++. ..++|+.++.-+.....+|.|...|...+.....
T Consensus 410 aq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r 487 (638)
T KOG1126|consen 410 AQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR 487 (638)
T ss_pred HHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch
Confidence 34444442 336789999999999999999999999999998865 8999999999999999999999999999986532
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 002664 365 PSVIAYNSLLTCLGKKGRVTEAMKIFEAMKKDARPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEAGLFPNVMTVNIMVD 444 (895)
Q Consensus 365 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 444 (895)
+-.+|..++..|.+.++++.|.-.|+++....|.+.+....+...+-+.|+.++|+.+++++...+. -|+..-...+.
T Consensus 488 -hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~-kn~l~~~~~~~ 565 (638)
T KOG1126|consen 488 -HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDP-KNPLCKYHRAS 565 (638)
T ss_pred -hhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCC-CCchhHHHHHH
Confidence 5668889999999999999999999999999999999999999999999999999999999987653 35555556777
Q ss_pred HHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcch
Q 002664 445 RLCKAQKLDEAFSIFEGMDHKTCTPDAVTFCSLIDGLGKNGRVDDAYKFYEKMLDTDQIPNA 506 (895)
Q Consensus 445 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 506 (895)
.+...+++++|+..++++.+. ++.+..++..++..|-+.|+.+.|+.-|.-+.+.++++..
T Consensus 566 il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 566 ILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred HHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 888899999999999999887 3446788999999999999999999999999998876554
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.3e-12 Score=128.64 Aligned_cols=504 Identities=11% Similarity=0.050 Sum_probs=248.0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 002664 227 VHLFTTLIRVFAREGRVDDALFLLDEMKNNAFSVDIVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGVAPDDVTYTSMIGV 306 (895)
Q Consensus 227 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~ 306 (895)
..-+..+.+-+..+.++..|..+-+++...+..|+. --.++.++.-.|.++.|..+...-.-. ..|..+......+
T Consensus 16 ~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~~dp~d--~~~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~~~~ 91 (611)
T KOG1173|consen 16 LEKYRRLVRDALMQHRYKTALFWADKVAGLTNDPAD--IYWLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLAAKC 91 (611)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHhccCChHH--HHHHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHHHHH
Confidence 344445555555666667777777766655433332 234666777777777776666544322 2355666666667
Q ss_pred HHhcCCHhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 002664 307 LCKSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLFERLKQKGCIPSVIAYNSLLTCLGKKGRVTEA 386 (895)
Q Consensus 307 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 386 (895)
+.+..++++|..++...... -+...|..--. ...-..+.+. +... .......+..-...|....+.++|
T Consensus 92 l~~lk~~~~al~vl~~~~~~---~~~f~yy~~~~--~~~l~~n~~~----~~~~--~~~essic~lRgk~y~al~n~~~a 160 (611)
T KOG1173|consen 92 LVKLKEWDQALLVLGRGHVE---TNPFSYYEKDA--ANTLELNSAG----EDLM--INLESSICYLRGKVYVALDNREEA 160 (611)
T ss_pred HHHHHHHHHHHHHhcccchh---hcchhhcchhh--hceeccCccc----cccc--ccchhceeeeeeehhhhhccHHHH
Confidence 77777777777776633100 01111100000 0000000000 0000 000111122222344455556666
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC----CCChhhHHHHHHHHHhcCChhHHHHHHHHh
Q 002664 387 MKIFEAMKKDARPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEAGL----FPNVMTVNIMVDRLCKAQKLDEAFSIFEGM 462 (895)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 462 (895)
...|.+.......+...+..++....-. +.+.++.+...+. .-+......+.....-...-++....-++.
T Consensus 161 r~~Y~~Al~~D~~c~Ea~~~lvs~~mlt-----~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~ 235 (611)
T KOG1173|consen 161 RDKYKEALLADAKCFEAFEKLVSAHMLT-----AQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDE 235 (611)
T ss_pred HHHHHHHHhcchhhHHHHHHHHHHHhcc-----hhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchh
Confidence 6666655544444444444444333221 1111111111100 001111111111110000000000000000
Q ss_pred hhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHh
Q 002664 463 DHKTCTPDAVTFCSLIDGLGKNGRVDDAYKFYEKMLDTDQIPNAILYTSLIRNFFKHGRKEDGHKIYKEMVQRGCSPDLM 542 (895)
Q Consensus 463 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 542 (895)
.-.+...+........+-+...+++.+..++.+...+.++ +....+..-|.++...|+..+-..+=.++++. .|..+.
T Consensus 236 sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dp-fh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~ 313 (611)
T KOG1173|consen 236 SLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDP-FHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKAL 313 (611)
T ss_pred hhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCC-CCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCc
Confidence 1112233455555556666667777777777777777654 34444444455666666666655555555554 344556
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 002664 543 LLNTYMDCVFKAGETEKGRALFEEIKAQGFVPDVQSYSILIHGLVKAGFAHETDQLFYAMKKQGCVLDTRAYNTVVDGFC 622 (895)
Q Consensus 543 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 622 (895)
+|-.+...|...|+..+|+..|.+....+. .=...|..+.+.|...|..+.|...+..+.+. ++....-+.-+.--|.
T Consensus 314 sW~aVg~YYl~i~k~seARry~SKat~lD~-~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~ 391 (611)
T KOG1173|consen 314 SWFAVGCYYLMIGKYSEARRYFSKATTLDP-TFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYM 391 (611)
T ss_pred chhhHHHHHHHhcCcHHHHHHHHHHhhcCc-cccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHH
Confidence 666666666666777777777766654421 12345666666676677777776666655543 1111122223344456
Q ss_pred ccCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHHc--CCC----cCHHHHHHHHHHHHccCC
Q 002664 623 KSGKVNKAYQLLEEMKTKGHYPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSK--GIE----LNTVIYSSLIDGFGKVGR 696 (895)
Q Consensus 623 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~----~~~~~~~~l~~~~~~~g~ 696 (895)
+.++.+.|.++|.+.....+ .|+...+-+.-.....+.+.+|..+|+..+.. ... .-..+++.|+.+|.+.+.
T Consensus 392 ~t~n~kLAe~Ff~~A~ai~P-~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~ 470 (611)
T KOG1173|consen 392 RTNNLKLAEKFFKQALAIAP-SDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNK 470 (611)
T ss_pred HhccHHHHHHHHHHHHhcCC-CcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhh
Confidence 66667777777766665422 24555555555555566666777666665521 000 112345666666666777
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 002664 697 IDEAYLIMEELMQKGLTPNAYTWNCLLDALVKAEEISEAFVCFQSMKDLKCTPNHVTYSIII 758 (895)
Q Consensus 697 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 758 (895)
+++|+..+++.+... +.+..++.+++..|...|+++.|++.|.+.+. +.|+..+-..++
T Consensus 471 ~~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL 529 (611)
T KOG1173|consen 471 YEEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELL 529 (611)
T ss_pred HHHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHH
Confidence 777777776666632 22666666666666666777777777766665 445554444333
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.6e-10 Score=116.13 Aligned_cols=457 Identities=12% Similarity=0.135 Sum_probs=303.5
Q ss_pred HHccCCcchHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCChhHH
Q 002664 132 MAVSKNFEPLEEILGEMSLAGIGPTNNTCIELVVSCVKSKMLREAFDIIQTMRKFKFRPAFTAYTTLIGALATVRESNLM 211 (895)
Q Consensus 132 l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 211 (895)
+...++|....+..+.++. +++....+....+-.+...|+.++|.+......+.. ..+..+|..++-.+...++|++|
T Consensus 17 ~yE~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~ea 94 (700)
T KOG1156|consen 17 CYETKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEA 94 (700)
T ss_pred HHHHHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHH
Confidence 4456778888888888777 466666777777777888899999998888776543 55678899999999999999999
Q ss_pred HHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHC
Q 002664 212 LNLFHQMQELGYEVSVHLFTTLIRVFAREGRVDDALFLLDEMKNNAFSVDIVLYNVCIDCFGKVGKVDMAWKFFHEMKAQ 291 (895)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 291 (895)
+.+|..+...+ +.+..++..+...-...|+++.....-.+.++.. +.....|...+.+.--.|++..|..++++..+.
T Consensus 95 iKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t 172 (700)
T KOG1156|consen 95 IKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKT 172 (700)
T ss_pred HHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999875 5688899999888889999999888888887763 334566778888888899999999999999876
Q ss_pred C-CCCCHHHHHHHH------HHHHhcCCHhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Q 002664 292 G-VAPDDVTYTSMI------GVLCKSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLFERLKQKGCI 364 (895)
Q Consensus 292 g-~~p~~~~~~~l~------~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 364 (895)
. -.|+...+.... ......|.+++|.+.+......-.. ....-..-...+.+.+++++|..++..++..+
T Consensus 173 ~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~D-kla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn-- 249 (700)
T KOG1156|consen 173 QNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVD-KLAFEETKADLLMKLGQLEEAVKVYRRLLERN-- 249 (700)
T ss_pred hccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHH-HHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC--
Confidence 3 246666554433 3445678888888887765543221 22333455677889999999999999999985
Q ss_pred CCHHHHH-HHHHHHHhcCCHHHHH-HHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHCCCCCChhhHHH
Q 002664 365 PSVIAYN-SLLTCLGKKGRVTEAM-KIFEAMKKDARPNNTTYNVLIDMLCKAGNFED-ALKFRDAMKEAGLFPNVMTVNI 441 (895)
Q Consensus 365 ~~~~~~~-~l~~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~~~~~~~~~~ 441 (895)
||...|. .+..++.+--+.-++. .+|....+..|..... ..+--......++.+ .-.++..+.+.|+++-.. .
T Consensus 250 Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p-~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~---d 325 (700)
T KOG1156|consen 250 PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECP-RRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFK---D 325 (700)
T ss_pred chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccc-hhccHHHhCcchhHHHHHHHHHHHhhcCCCchhh---h
Confidence 5655554 4445554444444455 6666554433322221 111111222233333 344667777888754322 2
Q ss_pred HHHHHHhcCChh----HHHHHHHHhhhCC----------CCCChh--hHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcc
Q 002664 442 MVDRLCKAQKLD----EAFSIFEGMDHKT----------CTPDAV--TFCSLIDGLGKNGRVDDAYKFYEKMLDTDQIPN 505 (895)
Q Consensus 442 l~~~~~~~g~~~----~A~~~~~~~~~~~----------~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 505 (895)
+...|-.....+ -+..+...+...| -+|... ++..++..+-+.|+++.|..+++.++++-| .-
T Consensus 326 l~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTP-Tl 404 (700)
T KOG1156|consen 326 LRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTP-TL 404 (700)
T ss_pred hHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCc-hH
Confidence 222222111111 0111111111111 134433 455678888899999999999999998743 24
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHH------
Q 002664 506 AILYTSLIRNFFKHGRKEDGHKIYKEMVQRGCSPDLMLLNTYMDCVFKAGETEKGRALFEEIKAQGFVPDVQSY------ 579 (895)
Q Consensus 506 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~------ 579 (895)
+..|..-++.+...|..++|..++++..+.+ .+|...-..-.....+.++.++|.++.....+.|. +....
T Consensus 405 iEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~--~~~~~L~~mqc 481 (700)
T KOG1156|consen 405 IELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF--GAVNNLAEMQC 481 (700)
T ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc--chhhhHHHhhh
Confidence 4556666788889999999999999998875 55655555666777888999999999988887764 22111
Q ss_pred --HHH--HHHHHhcCChHHHHHHHHHHH
Q 002664 580 --SIL--IHGLVKAGFAHETDQLFYAMK 603 (895)
Q Consensus 580 --~~l--~~~~~~~g~~~~A~~~~~~~~ 603 (895)
-.+ ..+|.+.|++..|.+-|..+.
T Consensus 482 mWf~~E~g~ay~r~~k~g~ALKkfh~i~ 509 (700)
T KOG1156|consen 482 MWFQLEDGEAYLRQNKLGLALKKFHEIE 509 (700)
T ss_pred HHHhHhhhHHHHHHHHHHHHHHHHhhHH
Confidence 111 234556666666655554443
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.5e-12 Score=133.88 Aligned_cols=176 Identities=11% Similarity=-0.004 Sum_probs=113.4
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHH
Q 002664 684 YSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNAYTWNCLLDALVKAEEISEAFVCFQSMKDLK--CTPNHVTYSIIINGL 761 (895)
Q Consensus 684 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~p~~~~~~~l~~~~ 761 (895)
-+.++..+++.-+..++...-+++...-+ +..|..|++-+......+.|.....+..... +.-+..-+..+.+.+
T Consensus 462 ~~ql~l~l~se~n~lK~l~~~ekye~~lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL 538 (1088)
T KOG4318|consen 462 ANQLHLTLNSEYNKLKILCDEEKYEDLLF---AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLL 538 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHH
Confidence 34555666666666666654444433211 1567788888888888888888888876422 223445577788888
Q ss_pred HhcCCHhHHHHHHHHHHHCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 002664 762 CRVRKFNKAFVFWQEMQKQGF-KP-NTITYTTMISGLAKAGNITEANGLFERFKENGGVPDSACYNAMMEGLSNANRAMD 839 (895)
Q Consensus 762 ~~~g~~~~A~~~~~~~~~~~~-~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 839 (895)
.+.+...++.++++++.+.-. .| ...+.-.+.+.....|+.+.-.++++-+...|+.-. .-+.....+.++...
T Consensus 539 ~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~et----gPl~~vhLrkdd~s~ 614 (1088)
T KOG4318|consen 539 QRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSET----GPLWMVHLRKDDQSA 614 (1088)
T ss_pred HHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhc----ccceEEEeeccchhh
Confidence 888888888888888876511 22 134555666667778888888888777776655431 234445566777777
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 002664 840 AYTLFEETRRKGFNIHTKTCVILLDALH 867 (895)
Q Consensus 840 A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 867 (895)
|++..+....+ +.+.+.....+..++.
T Consensus 615 a~ea~e~~~qk-yk~~P~~~e~lcrlv~ 641 (1088)
T KOG4318|consen 615 AQEAPEPEEQK-YKPYPKDLEGLCRLVY 641 (1088)
T ss_pred hhhcchHHHHH-hcCChHHHHHHHHHHH
Confidence 77777766555 4666665555555554
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.1e-15 Score=154.83 Aligned_cols=261 Identities=15% Similarity=0.135 Sum_probs=109.2
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHCC-CCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHcc
Q 002664 616 TVVDGFCKSGKVNKAYQLLEEMKTKG-HYPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNTVIYSSLIDGFGKV 694 (895)
Q Consensus 616 ~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 694 (895)
.+...+.+.|++++|++++.+..... ...+...|..+.......+++++|...++++...+ +.++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccc
Confidence 55777888889999999886655443 23344555666667777888999999999888765 2355666677766 678
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHhcCCHhHHHHH
Q 002664 695 GRIDEAYLIMEELMQKGLTPNAYTWNCLLDALVKAEEISEAFVCFQSMKDLK-CTPNHVTYSIIINGLCRVRKFNKAFVF 773 (895)
Q Consensus 695 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~ 773 (895)
+++++|.++++...+.. +++..+..++..+...++++++.++++++.... .+++...|..++..+.+.|+.++|++.
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 88999998888776632 466667778888888999999999998877532 245667777888888899999999999
Q ss_pred HHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 002664 774 WQEMQKQGFKPN-TITYTTMISGLAKAGNITEANGLFERFKENGGVPDSACYNAMMEGLSNANRAMDAYTLFEETRRKGF 852 (895)
Q Consensus 774 ~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 852 (895)
++++++. .|+ ......++..+...|+.+++.++++...+.. ..|+..+..++.++...|+.++|+.++++..+..
T Consensus 169 ~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~- 244 (280)
T PF13429_consen 169 YRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN- 244 (280)
T ss_dssp HHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-
T ss_pred HHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-
Confidence 9999874 454 6778888888888999999888888887742 3366778888999999999999999999988874
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002664 853 NIHTKTCVILLDALHKAECLEQAAIVGAVLRE 884 (895)
Q Consensus 853 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~l~~ 884 (895)
|.|+.....++.++...|+.++|.++..++..
T Consensus 245 p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 245 PDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp TT-HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccccccc
Confidence 77888888999999999999999887766544
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.64 E-value=9.6e-16 Score=155.21 Aligned_cols=262 Identities=14% Similarity=0.145 Sum_probs=100.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCC-CCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhc
Q 002664 162 ELVVSCVKSKMLREAFDIIQTMRKFK-FRPAFTAYTTLIGALATVRESNLMLNLFHQMQELGYEVSVHLFTTLIRVFARE 240 (895)
Q Consensus 162 ~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 240 (895)
.+...+.+.|++++|++++....... .+.+...|..+.......++++.|...|+++...+. .++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~-~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK-ANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccc-ccc
Confidence 44555666666666666664433222 233344455555566667777788888877776542 255566666666 677
Q ss_pred CChhHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHhHHHHH
Q 002664 241 GRVDDALFLLDEMKNNAFSVDIVLYNVCIDCFGKVGKVDMAWKFFHEMKAQG-VAPDDVTYTSMIGVLCKSKRLEEAVAM 319 (895)
Q Consensus 241 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g-~~p~~~~~~~l~~~~~~~g~~~~A~~~ 319 (895)
+++++|..++.+..+. .++...+..++..+.+.++++++..+++.+.... .+++...|..++..+.+.|+.++|++.
T Consensus 91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 8888888887776554 2445556667777778888888888888776542 244666777777888888888888888
Q ss_pred HHHHhhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC
Q 002664 320 FEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLFERLKQKGCIPSVIAYNSLLTCLGKKGRVTEAMKIFEAMKKDARP 399 (895)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 399 (895)
++++++..|. |......++..+...|+.+++..+++...+.. +.|...+..++.++...|+.++|+.+|++..+..|.
T Consensus 169 ~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~ 246 (280)
T PF13429_consen 169 YRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPD 246 (280)
T ss_dssp HHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccccc
Confidence 8888877765 67777778888888888888777777776653 345566777788888888888888888888777788
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002664 400 NNTTYNVLIDMLCKAGNFEDALKFRDAMKE 429 (895)
Q Consensus 400 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 429 (895)
|+.....++.++...|+.++|.++.+++..
T Consensus 247 d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 247 DPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp -HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccccc
Confidence 888888888888888888888877766543
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.5e-09 Score=116.22 Aligned_cols=203 Identities=14% Similarity=0.141 Sum_probs=124.6
Q ss_pred CHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHH
Q 002664 610 DTRAYNTVVDGFCKSGKVNKAYQLLEEMKTKGHYPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNTVIYSSLID 689 (895)
Q Consensus 610 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 689 (895)
.+..|..+..+-.+.|.+.+|++.|-+. .|+..|..+++...+.|.+++-..++..+.++.-+|... +.|+.
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~ 1174 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIF 1174 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHH
Confidence 3556777888877888888777766543 266677778888888888888888877777765444433 45777
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHhH
Q 002664 690 GFGKVGRIDEAYLIMEELMQKGLTPNAYTWNCLLDALVKAEEISEAFVCFQSMKDLKCTPNHVTYSIIINGLCRVRKFNK 769 (895)
Q Consensus 690 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 769 (895)
+|++.++..+-.+++ ..||......+++-|...|.++.|.-+|..+.+ |..|...+...|.|..
T Consensus 1175 AyAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN---------~a~La~TLV~LgeyQ~ 1238 (1666)
T KOG0985|consen 1175 AYAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSN---------FAKLASTLVYLGEYQG 1238 (1666)
T ss_pred HHHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhh---------HHHHHHHHHHHHHHHH
Confidence 787777776644433 236777777777777777777777777665443 5556666666666666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 002664 770 AFVFWQEMQKQGFKPNTITYTTMISGLAKAGNITEANGLFERFKENGGVPDSACYNAMMEGLSNANRAMDAYTLFEET 847 (895)
Q Consensus 770 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 847 (895)
|.+.-.++ .+..||..+..+|...+.+.-| ++....+.....-...|+.-|...|-++|-+.+++..
T Consensus 1239 AVD~aRKA------ns~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~ 1305 (1666)
T KOG0985|consen 1239 AVDAARKA------NSTKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAG 1305 (1666)
T ss_pred HHHHhhhc------cchhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhh
Confidence 66544332 2445565555555544444333 2222122224444555555566666666665555544
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.64 E-value=9.4e-12 Score=117.46 Aligned_cols=450 Identities=12% Similarity=0.084 Sum_probs=257.9
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhhH
Q 002664 202 LATVRESNLMLNLFHQMQELGYEVSVHLFTTLIRVFAREGRVDDALFLLDEMKNNAFSVDIVLYNVCIDCFGKVGKVDMA 281 (895)
Q Consensus 202 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 281 (895)
+...+++..|+.+++-....+-+-...+-..++.++.+.|++++|...+..+.+.. .++...+-.+.-++.-.|.+.+|
T Consensus 32 fls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA 110 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEA 110 (557)
T ss_pred HHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHH
Confidence 33455666666666655443322223444556667778888888888887776644 45555565666666677788887
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 002664 282 WKFFHEMKAQGVAPDDVTYTSMIGVLCKSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLFERLKQK 361 (895)
Q Consensus 282 ~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 361 (895)
..+-....+ ++..-..|.+.--+.++-++-..+.+.+.. ...--.+|.......-.+.+|++++.++...
T Consensus 111 ~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD-----~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d 180 (557)
T KOG3785|consen 111 KSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQD-----TLEDQLSLASVHYMRMHYQEAIDVYKRVLQD 180 (557)
T ss_pred HHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhh-----hHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 776654322 233334444555566666665555555443 2233344555555556678888888888876
Q ss_pred CCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHH
Q 002664 362 GCIPSVIAYN-SLLTCLGKKGRVTEAMKIFEAMKKDARPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEAGLFPNVMTVN 440 (895)
Q Consensus 362 ~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 440 (895)
+ |+-...+ .+.-+|.+..-++-+.+++....+..|+++.+.+..+....+.=+-..|..-..++.+.+-.. .
T Consensus 181 n--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~-----~ 253 (557)
T KOG3785|consen 181 N--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE-----Y 253 (557)
T ss_pred C--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc-----c
Confidence 4 3433333 345567788888888888888888888888888888877776544445555555555543111 1
Q ss_pred HHHHHHHhc-----CChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcchhhHHHHHHH
Q 002664 441 IMVDRLCKA-----QKLDEAFSIFEGMDHKTCTPDAVTFCSLIDGLGKNGRVDDAYKFYEKMLDTDQIPNAILYTSLIRN 515 (895)
Q Consensus 441 ~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 515 (895)
..+.-+++. ..-+.|++++-.+... -+.+-..++--|.+.+++.+|..+.+++.. .++.-|..-+..
T Consensus 254 ~f~~~l~rHNLVvFrngEgALqVLP~L~~~----IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P----ttP~EyilKgvv 325 (557)
T KOG3785|consen 254 PFIEYLCRHNLVVFRNGEGALQVLPSLMKH----IPEARLNLIIYYLNQNDVQEAISLCKDLDP----TTPYEYILKGVV 325 (557)
T ss_pred hhHHHHHHcCeEEEeCCccHHHhchHHHhh----ChHhhhhheeeecccccHHHHHHHHhhcCC----CChHHHHHHHHH
Confidence 233334443 3456777777655543 233445566678889999999888776532 233334333333
Q ss_pred HHhcCC-------HHHHHHHHHHHHHcCCCCC-HhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 002664 516 FFKHGR-------KEDGHKIYKEMVQRGCSPD-LMLLNTYMDCVFKAGETEKGRALFEEIKAQGFVPDVQSYSILIHGLV 587 (895)
Q Consensus 516 ~~~~~~-------~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 587 (895)
+...|+ ..-|...|+-.-+.+..-| ..--..+..+++-..++++.+..+..+..--...|...+ .+.++++
T Consensus 326 ~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~ 404 (557)
T KOG3785|consen 326 FAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKL 404 (557)
T ss_pred HHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHH
Confidence 444333 3334444444333332222 222334445555566677777777766655333333333 3667777
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHhHH-HHHHHHHccCChHHHHHHHHHHHHCCCCCCHH-hHHHHHHHHHccCCHHHH
Q 002664 588 KAGFAHETDQLFYAMKKQGCVLDTRAYN-TVVDGFCKSGKVNKAYQLLEEMKTKGHYPTVV-TYGSVIDGLAKIDRLDEA 665 (895)
Q Consensus 588 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~A 665 (895)
..|.+.+|+++|-.+....++ |..+|. .+.++|.+.++++.|.+++-++-. ..+.. ....+.+-|.+.+.+--|
T Consensus 405 atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyya 480 (557)
T KOG3785|consen 405 ATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYA 480 (557)
T ss_pred HhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777666544333 334443 445667777777777665544322 11222 223334455666666666
Q ss_pred HHHHHHHHHcCCCcCHHHH
Q 002664 666 YMLFEEAKSKGIELNTVIY 684 (895)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~ 684 (895)
.+.|+.+... .|++.-|
T Consensus 481 aKAFd~lE~l--DP~pEnW 497 (557)
T KOG3785|consen 481 AKAFDELEIL--DPTPENW 497 (557)
T ss_pred HHhhhHHHcc--CCCcccc
Confidence 6666666554 3444444
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.2e-10 Score=120.13 Aligned_cols=127 Identities=14% Similarity=0.118 Sum_probs=71.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHH
Q 002664 719 WNCLLDALVKAEEISEAFVCFQSMKDLKCTPNHVTYSIIINGLCRVRKFNKAFVFWQEMQKQGFKPN-TITYTTMISGLA 797 (895)
Q Consensus 719 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~ 797 (895)
|......+.+.++.++|...+.+..... +-....|...+..+...|..++|.+.|..... +.|+ ..+..++..++.
T Consensus 653 wllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~--ldP~hv~s~~Ala~~ll 729 (799)
T KOG4162|consen 653 WLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALA--LDPDHVPSMTALAELLL 729 (799)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh--cCCCCcHHHHHHHHHHH
Confidence 3334445555666666665555555422 22334455555555566666666666666554 4444 235555666666
Q ss_pred hcCCHHHHHH--HHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 002664 798 KAGNITEANG--LFERFKENGGVP-DSACYNAMMEGLSNANRAMDAYTLFEETRRK 850 (895)
Q Consensus 798 ~~g~~~~A~~--~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 850 (895)
+.|+..-|.. ++..+++ +.| ++..|..++..+.+.|+.++|-+.|....+.
T Consensus 730 e~G~~~la~~~~~L~dalr--~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 730 ELGSPRLAEKRSLLSDALR--LDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HhCCcchHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 6665555555 6666665 445 5666666666666666666666666655444
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.8e-12 Score=137.43 Aligned_cols=284 Identities=11% Similarity=0.084 Sum_probs=202.1
Q ss_pred hcCChhHHHHHHHHHHhCCCCCChHh-HHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHH--HHHHHHHhcCCHhH
Q 002664 239 REGRVDDALFLLDEMKNNAFSVDIVL-YNVCIDCFGKVGKVDMAWKFFHEMKAQGVAPDDVTYT--SMIGVLCKSKRLEE 315 (895)
Q Consensus 239 ~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~--~l~~~~~~~g~~~~ 315 (895)
..|+++.|.+.+....+.. ++... |........+.|+++.|.+.+.++.+. .|+..... .....+...|+++.
T Consensus 96 ~eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~ 171 (398)
T PRK10747 96 AEGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHA 171 (398)
T ss_pred hCCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHH
Confidence 3688888887777665542 22233 333344447888888888888888774 44543322 33567788888888
Q ss_pred HHHHHHHHhhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCH-------HHHHHHHHHHHhcCCHHHHHH
Q 002664 316 AVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLFERLKQKGCIPSV-------IAYNSLLTCLGKKGRVTEAMK 388 (895)
Q Consensus 316 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~ 388 (895)
|...++++.+..|. +..++..+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...+
T Consensus 172 Al~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~ 250 (398)
T PRK10747 172 ARHGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKR 250 (398)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 88888888888766 7778888888888888888888888888887644222 133334444444556677777
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhhhCCCC
Q 002664 389 IFEAMKKDARPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEAGLFPNVMTVNIMVDRLCKAQKLDEAFSIFEGMDHKTCT 468 (895)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 468 (895)
+++.+.+..+.++.....++..+...|+.++|.+.+++..+. .|+... .++.+.+..++.+++....+...+.. +
T Consensus 251 ~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~-P 325 (398)
T PRK10747 251 WWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQH-G 325 (398)
T ss_pred HHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhC-C
Confidence 777776667778888888888888888888888888888774 344422 22333445588888888888877663 3
Q ss_pred CChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002664 469 PDAVTFCSLIDGLGKNGRVDDAYKFYEKMLDTDQIPNAILYTSLIRNFFKHGRKEDGHKIYKEMVQ 534 (895)
Q Consensus 469 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 534 (895)
.|+..+..++..+.+.+++++|.+.|+.+++.. |+...+..+...+.+.|+.++|..++++.+.
T Consensus 326 ~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~--P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 326 DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQR--PDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 466677788888888888888888888888764 5667777788888888888888888877654
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.2e-12 Score=137.60 Aligned_cols=289 Identities=11% Similarity=0.051 Sum_probs=176.8
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCC-hHhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHH
Q 002664 238 AREGRVDDALFLLDEMKNNAFSVD-IVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGVAPDDVTYTSMIGVLCKSKRLEEA 316 (895)
Q Consensus 238 ~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A 316 (895)
...|+++.|.+.+.+..+.. |+ ...+-.......+.|+++.|.+++.++.+....+...........+...|+++.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 46788888888887776653 33 3334455666777788888888888877653222222333456777778888888
Q ss_pred HHHHHHHhhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHH----HHHHHHHhcCCHHHHHHHHHH
Q 002664 317 VAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLFERLKQKGCIPSVIAYN----SLLTCLGKKGRVTEAMKIFEA 392 (895)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~~~~A~~~~~~ 392 (895)
...++.+.+..|. +..++..++..+...|++++|.+.+..+.+.+.. +...+. .........+..+++.+.+..
T Consensus 173 l~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~ 250 (409)
T TIGR00540 173 RHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLN 250 (409)
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 8888888887765 6677778888888888888888888888877643 222221 111111222233333334444
Q ss_pred HhcCC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhH---HHHHHHHHhcCChhHHHHHHHHhhhC
Q 002664 393 MKKDA----RPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEAGLFPNVMTV---NIMVDRLCKAQKLDEAFSIFEGMDHK 465 (895)
Q Consensus 393 ~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~ 465 (895)
+.... +.++..+..++..+...|+.++|.+.+++..+.. ||.... ..........++.+.+.+.+++..+.
T Consensus 251 ~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~ 328 (409)
T TIGR00540 251 WWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN 328 (409)
T ss_pred HHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh
Confidence 43333 3577788888888888888888888888887753 343311 11111223345566666666666554
Q ss_pred CCCCCh--hhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002664 466 TCTPDA--VTFCSLIDGLGKNGRVDDAYKFYEKMLDTDQIPNAILYTSLIRNFFKHGRKEDGHKIYKEMV 533 (895)
Q Consensus 466 ~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 533 (895)
. +.|+ ....+++..+.+.|++++|.+.|+........|+...+..++..+.+.|+.++|.+++++.+
T Consensus 329 ~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 329 V-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred C-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 2 2234 45556677777777777777777743222223555556666777777777777766666543
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.4e-12 Score=137.36 Aligned_cols=293 Identities=13% Similarity=0.038 Sum_probs=176.1
Q ss_pred HhcCCHhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 002664 308 CKSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLFERLKQKGCIPSVIAYNSLLTCLGKKGRVTEAM 387 (895)
Q Consensus 308 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 387 (895)
...|+++.|.+.+.+..+..+. ....+-....++...|+++.|.+++.++.+....+...........+...|+++.|.
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~-~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAE-PVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 4577888888777777665443 234444556667777888888888887766542222234444577777888888888
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHH-H---HHHHHHhcCChhHHHHHHHHhh
Q 002664 388 KIFEAMKKDARPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEAGLFPNVMTVN-I---MVDRLCKAQKLDEAFSIFEGMD 463 (895)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~---l~~~~~~~g~~~~A~~~~~~~~ 463 (895)
..++.+.+..|.++.++..+...+...|++++|.+.+..+.+.+.. +...+. . ....+...+..+++.+.+..+.
T Consensus 174 ~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~ 252 (409)
T TIGR00540 174 HGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNWW 252 (409)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 8888888878888888888888888888888888888888877543 222221 1 1111122222232333444333
Q ss_pred hCCC---CCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcchhhH-HHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 002664 464 HKTC---TPDAVTFCSLIDGLGKNGRVDDAYKFYEKMLDTDQIPNAILY-TSLIRNFFKHGRKEDGHKIYKEMVQRGCSP 539 (895)
Q Consensus 464 ~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 539 (895)
.... +.+...+..++..+...|+.++|.+.+++.++..+......+ ..........++.+.+.+.++...+.. +.
T Consensus 253 ~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~-p~ 331 (409)
T TIGR00540 253 KNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV-DD 331 (409)
T ss_pred HHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC-CC
Confidence 3311 136677777778888888888888888888876543221111 111112233455666666666666541 22
Q ss_pred CH--hhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 002664 540 DL--MLLNTYMDCVFKAGETEKGRALFEEIKAQGFVPDVQSYSILIHGLVKAGFAHETDQLFYAMK 603 (895)
Q Consensus 540 ~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 603 (895)
|. ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++..
T Consensus 332 ~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 332 KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33 44555666666666666666666643322224566656666666666666666666666543
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=5.1e-12 Score=133.91 Aligned_cols=283 Identities=13% Similarity=0.090 Sum_probs=169.4
Q ss_pred cCCHhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHH--HHHHHHHHhcCCHHHHH
Q 002664 310 SKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLFERLKQKGCIPSVIAY--NSLLTCLGKKGRVTEAM 387 (895)
Q Consensus 310 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~A~ 387 (895)
.|+++.|.+.+....+....| ...|........+.|+++.|..++.++.+.. |+.... ......+...|+++.|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~--~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAELA--DNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHCCCHHHHH
Confidence 577777776666654432211 2223233344467777777777777776643 333222 23356677777888888
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChh-------hHHHHHHHHHhcCChhHHHHHHH
Q 002664 388 KIFEAMKKDARPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEAGLFPNVM-------TVNIMVDRLCKAQKLDEAFSIFE 460 (895)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~g~~~~A~~~~~ 460 (895)
..++.+.+..|.++.+...+...|.+.|++++|.+++..+.+.+..++.. .|..++.......+.+...++++
T Consensus 174 ~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 174 HGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 88877777777777788888888888888888888888877765432221 12222222233334445555555
Q ss_pred HhhhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 002664 461 GMDHKTCTPDAVTFCSLIDGLGKNGRVDDAYKFYEKMLDTDQIPNAILYTSLIRNFFKHGRKEDGHKIYKEMVQRGCSPD 540 (895)
Q Consensus 461 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 540 (895)
.+... .+.++.....++..+...|+.++|...+++..+.. ++... .++.+....++.+++++..+...+.. +.|
T Consensus 254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~--~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~-P~~ 327 (398)
T PRK10747 254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQ--YDERL--VLLIPRLKTNNPEQLEKVLRQQIKQH-GDT 327 (398)
T ss_pred hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCHHH--HHHHhhccCCChHHHHHHHHHHHhhC-CCC
Confidence 54433 23356666777777777777777777777776642 23321 12233334466777777777666652 334
Q ss_pred HhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 002664 541 LMLLNTYMDCVFKAGETEKGRALFEEIKAQGFVPDVQSYSILIHGLVKAGFAHETDQLFYAMK 603 (895)
Q Consensus 541 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 603 (895)
......+...+...+++++|.+.|+.+.+. .|+...+..+...+.+.|+.++|..++++..
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 445556666666666666666666666655 4666666666666666666666666666554
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.5e-08 Score=104.02 Aligned_cols=624 Identities=12% Similarity=0.124 Sum_probs=372.7
Q ss_pred CcCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHhHHHH
Q 002664 189 RPAFTAYTTLIGALATVRESNLMLNLFHQMQELGYEVSVHLFTTLIRVFAREGRVDDALFLLDEMKNNAFSVDIVLYNVC 268 (895)
Q Consensus 189 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 268 (895)
+.++.+|...|..-.. .-......+|+++.+. ++.+-..|...++.-. ..-.+..|....|-.+
T Consensus 24 p~svk~W~RYIe~k~~-sp~k~~~~lYERal~~-lp~sykiW~~YL~~R~--------------~~vk~~~~T~~~~~~v 87 (835)
T KOG2047|consen 24 PFSVKCWLRYIEHKAG-SPDKQRNLLYERALKE-LPGSYKIWYDYLKARR--------------AQVKHLCPTDPAYESV 87 (835)
T ss_pred chhHHHHHHHHHHHcc-CChHHHHHHHHHHHHH-CCCchHHHHHHHHHHH--------------HHhhccCCCChHHHHH
Confidence 4456666666654322 2233455677777765 4556666666553211 0111223444444443
Q ss_pred HHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCC-CCHHhHHHHHHHHHccCC
Q 002664 269 IDCFGKVGKVDMAWKFFHEMKAQGVAPDDVTYTSMIGVLCKSKRLEEAVAMFEQMDRNREV-PCAYAYNTMIMGYGSVGK 347 (895)
Q Consensus 269 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~ 347 (895)
-+++ +.++- .|.+ -+..|...+..+.++|+...-...|+..+..-+. .....|...+......|-
T Consensus 88 n~c~------er~lv---~mHk-----mpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~l 153 (835)
T KOG2047|consen 88 NNCF------ERCLV---FMHK-----MPRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGL 153 (835)
T ss_pred HHHH------HHHHH---HHhc-----CCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCC
Confidence 3333 22222 2222 2355666677777888888888888877654322 233466666777777777
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc-------CCCCCHHHHHHHHHHHHhcCCHHHH
Q 002664 348 FDEAFSLFERLKQKGCIPSVIAYNSLLTCLGKKGRVTEAMKIFEAMKK-------DARPNNTTYNVLIDMLCKAGNFEDA 420 (895)
Q Consensus 348 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~A 420 (895)
++-+..++++.++. ++..-...+..+++.+++++|.+.+..+.. ..+.+...|..+-....++-+.-..
T Consensus 154 Pets~rvyrRYLk~----~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~s 229 (835)
T KOG2047|consen 154 PETSIRVYRRYLKV----APEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQS 229 (835)
T ss_pred hHHHHHHHHHHHhc----CHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcc
Confidence 88888888888875 333466677778888888888888877643 2455666777777766665443322
Q ss_pred H---HHHHHHHHCCCCCCh--hhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHH
Q 002664 421 L---KFRDAMKEAGLFPNV--MTVNIMVDRLCKAQKLDEAFSIFEGMDHKTCTPDAVTFCSLIDGLGKNGRVDDAYKFYE 495 (895)
Q Consensus 421 ~---~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 495 (895)
+ ++++.+... .+|. ..|.+|.+.|.+.|.+++|.+++++....- ....-|..+.+.|..-....-+..+=
T Consensus 230 lnvdaiiR~gi~r--ftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me- 304 (835)
T KOG2047|consen 230 LNVDAIIRGGIRR--FTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKME- 304 (835)
T ss_pred cCHHHHHHhhccc--CcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHh-
Confidence 2 233333322 2332 467888888888888888888888877652 23344555555554332211111111
Q ss_pred HHHhCCC-CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----------CCCCHhhHHHHHHHHHHcCChhHHHHH
Q 002664 496 KMLDTDQ-IPNAILYTSLIRNFFKHGRKEDGHKIYKEMVQRG-----------CSPDLMLLNTYMDCVFKAGETEKGRAL 563 (895)
Q Consensus 496 ~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----------~~~~~~~~~~l~~~~~~~~~~~~a~~~ 563 (895)
-..+.+. ..+.. +++-...-|+.+.... -+.+...|..-+ -+..|+..+-...
T Consensus 305 ~a~~~~~n~ed~~-------------dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV--~l~e~~~~~~i~t 369 (835)
T KOG2047|consen 305 LADEESGNEEDDV-------------DLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRV--KLYEGNAAEQINT 369 (835)
T ss_pred hhhhcccChhhhh-------------hHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhh--hhhcCChHHHHHH
Confidence 0000110 00111 1111112222222210 122333333322 3446777788888
Q ss_pred HHHHHHCCCCCC------HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC---HHhHHHHHHHHHccCChHHHHHHH
Q 002664 564 FEEIKAQGFVPD------VQSYSILIHGLVKAGFAHETDQLFYAMKKQGCVLD---TRAYNTVVDGFCKSGKVNKAYQLL 634 (895)
Q Consensus 564 ~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~ 634 (895)
+.++... +.|. ...|..+...|-..|+.+.|..+|++..+...+.- ..+|......-.+..+++.|++++
T Consensus 370 yteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm 448 (835)
T KOG2047|consen 370 YTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLM 448 (835)
T ss_pred HHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 8887764 2222 34678889999999999999999999988654322 456666677777888999999999
Q ss_pred HHHHHCCCCC-----------------CHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCH
Q 002664 635 EEMKTKGHYP-----------------TVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNTVIYSSLIDGFGKVGRI 697 (895)
Q Consensus 635 ~~~~~~~~~p-----------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 697 (895)
+......-.| +...|...++.....|-++....+++++++.-+. ++.+....+..+....-+
T Consensus 449 ~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yf 527 (835)
T KOG2047|consen 449 RRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYF 527 (835)
T ss_pred HhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHH
Confidence 8876431111 1234455556666778888899999999887543 444433444455566678
Q ss_pred HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHh---cCCHHHHHHHHHHHHhcCCCCCHHH--HHHHHHHHHhcCCHhHHH
Q 002664 698 DEAYLIMEELMQKGLTPN-AYTWNCLLDALVK---AEEISEAFVCFQSMKDLKCTPNHVT--YSIIINGLCRVRKFNKAF 771 (895)
Q Consensus 698 ~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~p~~~~--~~~l~~~~~~~g~~~~A~ 771 (895)
+++.++|++-+..-..|+ ...|+..+.-+.+ ...++.|..+|++.++ +++|...- |......-.+.|....|+
T Consensus 528 eesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~am 606 (835)
T KOG2047|consen 528 EESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAM 606 (835)
T ss_pred HHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 999999988766433344 3467766655544 3468999999999999 77775532 223333344568889999
Q ss_pred HHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHH
Q 002664 772 VFWQEMQKQGFKPN--TITYTTMISGLAKAGNITEANGLFERFKENGGVPDSAC---YNAMMEGLSNANRAMDAYTLFEE 846 (895)
Q Consensus 772 ~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~~ 846 (895)
++++++... +++. ...|+..|.-....=-+.....+|+++++ .-|+... ....+..-.+.|..+.|+.+|.-
T Consensus 607 siyerat~~-v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe--~Lp~~~~r~mclrFAdlEtklGEidRARaIya~ 683 (835)
T KOG2047|consen 607 SIYERATSA-VKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIE--SLPDSKAREMCLRFADLETKLGEIDRARAIYAH 683 (835)
T ss_pred HHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHH--hCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHh
Confidence 999998764 4444 34677777654444445667789999998 5676543 34556667889999999999887
Q ss_pred HHHCCCCC--CHhhHHHHHHHHHhcCCHH
Q 002664 847 TRRKGFNI--HTKTCVILLDALHKAECLE 873 (895)
Q Consensus 847 ~~~~~~~~--~~~~~~~l~~~~~~~g~~~ 873 (895)
..+. ++| +...|...=.-=.+-|+-+
T Consensus 684 ~sq~-~dPr~~~~fW~twk~FEvrHGned 711 (835)
T KOG2047|consen 684 GSQI-CDPRVTTEFWDTWKEFEVRHGNED 711 (835)
T ss_pred hhhc-CCCcCChHHHHHHHHHHHhcCCHH
Confidence 6555 333 3333434433345667733
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.3e-12 Score=119.36 Aligned_cols=270 Identities=14% Similarity=0.136 Sum_probs=172.7
Q ss_pred hcCCHhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCC------HHHHHHHHHHHHhcCC
Q 002664 309 KSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLFERLKQKGCIPS------VIAYNSLLTCLGKKGR 382 (895)
Q Consensus 309 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~ 382 (895)
-..+.++|+++|-+|.+.++. +..+..+|++.|-+.|..|.|+++...+.+. || ..+...|..-|...|-
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d~~-t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl 122 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQEDPE-TFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGL 122 (389)
T ss_pred hhcCcchHHHHHHHHHhcCch-hhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhh
Confidence 345667777777777776554 5666667777777777777777777776664 33 2244566677777788
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh----hhHHHHHHHHHhcCChhHHHHH
Q 002664 383 VTEAMKIFEAMKKDARPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEAGLFPNV----MTVNIMVDRLCKAQKLDEAFSI 458 (895)
Q Consensus 383 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~ 458 (895)
++.|+++|..+......-..+...|+..|-...+|++|++.-+++.+.+-.+.. ..|.-+...+....+.+.|..+
T Consensus 123 ~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~ 202 (389)
T COG2956 123 LDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAREL 202 (389)
T ss_pred hhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 888888888777666666677788888888888888888888888776533322 1233344444455677777777
Q ss_pred HHHhhhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 002664 459 FEGMDHKTCTPDAVTFCSLIDGLGKNGRVDDAYKFYEKMLDTDQIPNAILYTSLIRNFFKHGRKEDGHKIYKEMVQRGCS 538 (895)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 538 (895)
+.+..+.+.+ .+.+-..+++.....|++..|++.++.+.+.++.--..+...|..+|.+.|+.++....+..+.+. .
T Consensus 203 l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~--~ 279 (389)
T COG2956 203 LKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET--N 279 (389)
T ss_pred HHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--c
Confidence 7777666422 444455667777777777777777777777766555666677777777777777777777777665 2
Q ss_pred CCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 002664 539 PDLMLLNTYMDCVFKAGETEKGRALFEEIKAQGFVPDVQSYSILIHGLV 587 (895)
Q Consensus 539 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 587 (895)
+.......+........-.+.|...+.+-+.. .|+...+..++..-.
T Consensus 280 ~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l 326 (389)
T COG2956 280 TGADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHL 326 (389)
T ss_pred CCccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhh
Confidence 33333333333333334444444444443333 456666666555433
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.8e-10 Score=123.54 Aligned_cols=576 Identities=13% Similarity=0.045 Sum_probs=322.8
Q ss_pred CChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCCHHHHHHHH
Q 002664 276 GKVDMAWKFFHEMKAQGVAPDDVTYTSMIGVLCKSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLF 355 (895)
Q Consensus 276 g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 355 (895)
.+...|...|-+..+.... -...|..|+..|+..-+...|.+.|++.-+.+.. +..+.......|....+++.|..+.
T Consensus 472 K~~~~al~ali~alrld~~-~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDat-daeaaaa~adtyae~~~we~a~~I~ 549 (1238)
T KOG1127|consen 472 KNSALALHALIRALRLDVS-LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDAT-DAEAAAASADTYAEESTWEEAFEIC 549 (1238)
T ss_pred hhHHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhhhHHHHHHHhhccccHHHHHHHH
Confidence 4477777777777765322 3458999999999888999999999999988776 8889999999999999999999985
Q ss_pred HHHHhcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 002664 356 ERLKQKGCI-PSVIAYNSLLTCLGKKGRVTEAMKIFEAMKKDARPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEAGLFP 434 (895)
Q Consensus 356 ~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 434 (895)
-...+.... .-...|....-.|.+.++...|+..|+...+..|.|...|..++.+|...|.+..|.++|.+.... .|
T Consensus 550 l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP 627 (1238)
T KOG1127|consen 550 LRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RP 627 (1238)
T ss_pred HHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--Cc
Confidence 544443211 112233345556778899999999999999999999999999999999999999999999998874 34
Q ss_pred Chh-hHHHHHHHHHhcCChhHHHHHHHHhhhCC------CCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHh-------C
Q 002664 435 NVM-TVNIMVDRLCKAQKLDEAFSIFEGMDHKT------CTPDAVTFCSLIDGLGKNGRVDDAYKFYEKMLD-------T 500 (895)
Q Consensus 435 ~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~ 500 (895)
+.. .-.......|..|.+.+|...+..+.... ...-..++..+...+...|-...|..++++.++ .
T Consensus 628 ~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h 707 (1238)
T KOG1127|consen 628 LSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIH 707 (1238)
T ss_pred HhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 432 22223345678899999999988776531 111123333333334444444455555554433 2
Q ss_pred CCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCh---h---HHHHHHHHHHHCCCCC
Q 002664 501 DQIPNAILYTSLIRNFFKHGRKEDGHKIYKEMVQRGCSPDLMLLNTYMDCVFKAGET---E---KGRALFEEIKAQGFVP 574 (895)
Q Consensus 501 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~---~a~~~~~~~~~~~~~~ 574 (895)
....+...|..+.. |..+|-+.. .+ .|+......+..-.-..+.. + -+.+.+-.-.+ +..
T Consensus 708 ~~~~~~~~Wi~asd----------ac~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~~ 773 (1238)
T KOG1127|consen 708 SLQSDRLQWIVASD----------ACYIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LAI 773 (1238)
T ss_pred hhhhhHHHHHHHhH----------HHHHHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--Hhh
Confidence 21122222222222 122222211 00 11111111111101111111 1 01111111111 111
Q ss_pred CHHHHHHHHHHHHh----cC----ChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCH
Q 002664 575 DVQSYSILIHGLVK----AG----FAHETDQLFYAMKKQGCVLDTRAYNTVVDGFCKSGKVNKAYQLLEEMKTKGHYPTV 646 (895)
Q Consensus 575 ~~~~~~~l~~~~~~----~g----~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 646 (895)
+..+|..|+..|.+ .+ +...|...+.+.++.. ..+...|+.|.-. ...|++.-|...|-+-....+. ..
T Consensus 774 ~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~-~~ 850 (1238)
T KOG1127|consen 774 HMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPT-CH 850 (1238)
T ss_pred ccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhcccc-ch
Confidence 23334444433332 11 2235666666666542 3456667766655 5557777777777666554322 55
Q ss_pred HhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHH--HH--CCCCCCHHHHHHH
Q 002664 647 VTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNTVIYSSLIDGFGKVGRIDEAYLIMEEL--MQ--KGLTPNAYTWNCL 722 (895)
Q Consensus 647 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~--~~~~p~~~~~~~l 722 (895)
.+|..+.-.+.+..+++-|...|....... +.+...|..........|+.-++..+|..- .. .|--++..-|...
T Consensus 851 ~~W~NlgvL~l~n~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~ 929 (1238)
T KOG1127|consen 851 CQWLNLGVLVLENQDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCA 929 (1238)
T ss_pred hheeccceeEEecccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHH
Confidence 567666667777888888888888777664 445666665555566677777777776652 22 2333344444444
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh---------cCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHC-CCCCCHHHHH--
Q 002664 723 LDALVKAEEISEAFVCFQSMKD---------LKCTPNHVTYSIIINGLCRVRKFNKAFVFWQEMQKQ-GFKPNTITYT-- 790 (895)
Q Consensus 723 ~~~~~~~g~~~~A~~~~~~~~~---------~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~-- 790 (895)
.......|+.++-+...+++.. .+.+.....|.+.+....+.+.+.+|.+...+.... ..+-+...|+
T Consensus 930 te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynva 1009 (1238)
T KOG1127|consen 930 TEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVA 1009 (1238)
T ss_pred HHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 4445556665554444433321 134445567777777777777777777666665422 1122333333
Q ss_pred --HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-C-HhhHHHHHHHH
Q 002664 791 --TMISGLAKAGNITEANGLFERFKENGGVPDSACYNAMMEGLSNANRAMDAYTLFEETRRKGFNI-H-TKTCVILLDAL 866 (895)
Q Consensus 791 --~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~-~~~~~~l~~~~ 866 (895)
.+.+.++..|.++.|...+..... ..+..+...- -+.+-.|+++++.+.|++++.---.. + ......++.+.
T Consensus 1010 k~~~gRL~lslgefe~A~~a~~~~~~---evdEdi~gt~-l~lFfkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~ 1085 (1238)
T KOG1127|consen 1010 KPDAGRLELSLGEFESAKKASWKEWM---EVDEDIRGTD-LTLFFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCM 1085 (1238)
T ss_pred hhhhhhhhhhhcchhhHhhhhcccch---hHHHHHhhhh-HHHHHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHH
Confidence 334445555666655433322211 0011111111 11233467777777777766542111 1 12223455555
Q ss_pred HhcCCHHHHHH
Q 002664 867 HKAECLEQAAI 877 (895)
Q Consensus 867 ~~~g~~~~A~~ 877 (895)
...+..+.|..
T Consensus 1086 g~~~~k~~A~~ 1096 (1238)
T KOG1127|consen 1086 GLARQKNDAQF 1096 (1238)
T ss_pred hhcccchHHHH
Confidence 55666666654
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.5e-10 Score=120.57 Aligned_cols=601 Identities=12% Similarity=0.031 Sum_probs=302.7
Q ss_pred hhHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHH
Q 002664 243 VDDALFLLDEMKNNAFSVDIVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGVAPDDVTYTSMIGVLCKSKRLEEAVAMFEQ 322 (895)
Q Consensus 243 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 322 (895)
...|+..|-+..+.. ..-...|..|+..|+..-+...|.+.|....+.+.. +...+......|....+++.|..+.-.
T Consensus 474 ~~~al~ali~alrld-~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDat-daeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 474 SALALHALIRALRLD-VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDAT-DAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred HHHHHHHHHHHHhcc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 556666666555543 222345666777776666667777777777665322 445666677777777777777766333
Q ss_pred HhhCCCC-CCHHhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCH
Q 002664 323 MDRNREV-PCAYAYNTMIMGYGSVGKFDEAFSLFERLKQKGCIPSVIAYNSLLTCLGKKGRVTEAMKIFEAMKKDARPNN 401 (895)
Q Consensus 323 ~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 401 (895)
..+..+. .-...|...+-.|...++...|..-|+......+. |...|..++.+|...|++..|.++|.++....|.+.
T Consensus 552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~ 630 (1238)
T KOG1127|consen 552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSK 630 (1238)
T ss_pred HhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhH
Confidence 3222211 11223334555566777777777777777766533 666777777777777777777777777776667777
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCCChhhHHHHHHHHHhcCChhHHHHHHHHhhh-------CCCC
Q 002664 402 TTYNVLIDMLCKAGNFEDALKFRDAMKEA------GLFPNVMTVNIMVDRLCKAQKLDEAFSIFEGMDH-------KTCT 468 (895)
Q Consensus 402 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~~ 468 (895)
..-.......+..|++.+|+..+...... +...-..++-.+...+.-.|-...|.+.+++.++ ....
T Consensus 631 y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~ 710 (1238)
T KOG1127|consen 631 YGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQ 710 (1238)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhh
Confidence 66666777777777777777766655432 0001112222222223333333334444333222 1111
Q ss_pred CChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHhcCCH---H---HHHHHHHHHHHcCCCCCHh
Q 002664 469 PDAVTFCSLIDGLGKNGRVDDAYKFYEKMLDTDQIPNAILYTSLIRNFFKHGRK---E---DGHKIYKEMVQRGCSPDLM 542 (895)
Q Consensus 469 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~---~A~~~~~~~~~~~~~~~~~ 542 (895)
.+...|..+.++ ..+|-... .+ .|+......+..-.-+.+.. + -+.+.+-.-++. ..+..
T Consensus 711 ~~~~~Wi~asda----------c~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl--~~~~~ 776 (1238)
T KOG1127|consen 711 SDRLQWIVASDA----------CYIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSL--AIHMY 776 (1238)
T ss_pred hhHHHHHHHhHH----------HHHHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHH--hhccc
Confidence 122222222222 11121111 00 11221111111111111111 0 011111111111 11122
Q ss_pred hHHHHHHHHHH----c----CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhH
Q 002664 543 LLNTYMDCVFK----A----GETEKGRALFEEIKAQGFVPDVQSYSILIHGLVKAGFAHETDQLFYAMKKQGCVLDTRAY 614 (895)
Q Consensus 543 ~~~~l~~~~~~----~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 614 (895)
.|..++..|.+ . .+...|+..+.+.+... ..+..+|+.|.-. ...|.+.-|...|-+..... +....+|
T Consensus 777 ~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W 853 (1238)
T KOG1127|consen 777 PWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQW 853 (1238)
T ss_pred hHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhhe
Confidence 33333322222 1 12235566666655542 2255566655544 44566666666665554442 4456677
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHH----cCCCcCHHHHHHHHHH
Q 002664 615 NTVVDGFCKSGKVNKAYQLLEEMKTKGHYPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKS----KGIELNTVIYSSLIDG 690 (895)
Q Consensus 615 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~~~~~l~~~ 690 (895)
..+...+.+..+++.|...|.......+. +...|..........|+.-++..+|..--. .|-.++...|.+....
T Consensus 854 ~NlgvL~l~n~d~E~A~~af~~~qSLdP~-nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~ 932 (1238)
T KOG1127|consen 854 LNLGVLVLENQDFEHAEPAFSSVQSLDPL-NLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEI 932 (1238)
T ss_pred eccceeEEecccHHHhhHHHHhhhhcCch-hhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHH
Confidence 77777777778888888888777765332 444454444444456666666666655221 1222333333333334
Q ss_pred HHccCCHHHHHHHHHHHHH---------CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCCCHHHHH----H
Q 002664 691 FGKVGRIDEAYLIMEELMQ---------KGLTPNAYTWNCLLDALVKAEEISEAFVCFQSMKDL-KCTPNHVTYS----I 756 (895)
Q Consensus 691 ~~~~g~~~~A~~~~~~~~~---------~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~----~ 756 (895)
....|++++-+...+++-. .+.+.+..+|...+....+.+.++.|.++..+.+.. ...-+..+|+ .
T Consensus 933 h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~ 1012 (1238)
T KOG1127|consen 933 HLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPD 1012 (1238)
T ss_pred HHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Confidence 4455555554443333211 133346677777777777777777777777665420 1122333444 2
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---C-HHHHHHHHHHHH
Q 002664 757 IINGLCRVRKFNKAFVFWQEMQKQGFKPNTITYTTMISGLAKAGNITEANGLFERFKENGGVP---D-SACYNAMMEGLS 832 (895)
Q Consensus 757 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p---~-~~~~~~l~~~~~ 832 (895)
....++..|.++.|..-+..... ..+..+-..-+. ..-.|+++++.+.|++++. +.. + ......++....
T Consensus 1013 ~gRL~lslgefe~A~~a~~~~~~---evdEdi~gt~l~-lFfkndf~~sl~~fe~aLs--is~se~d~vvLl~kva~~~g 1086 (1238)
T KOG1127|consen 1013 AGRLELSLGEFESAKKASWKEWM---EVDEDIRGTDLT-LFFKNDFFSSLEFFEQALS--ISNSESDKVVLLCKVAVCMG 1086 (1238)
T ss_pred hhhhhhhhcchhhHhhhhcccch---hHHHHHhhhhHH-HHHHhHHHHHHHHHHHHhh--hcccccchhhhhHHHHHHHh
Confidence 34455666677665544332221 111111111111 1345778888888888776 322 2 233445555666
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC
Q 002664 833 NANRAMDAYTLFEETRRKGFNIHTKTCVILLDALHKAEC 871 (895)
Q Consensus 833 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 871 (895)
..+..+.|...+-+..... +++......|.-++.-..+
T Consensus 1087 ~~~~k~~A~~lLfe~~~ls-~~~~~sll~L~A~~ild~d 1124 (1238)
T KOG1127|consen 1087 LARQKNDAQFLLFEVKSLS-KVQASSLLPLPAVYILDAD 1124 (1238)
T ss_pred hcccchHHHHHHHHHHHhC-ccchhhHHHHHHHHHHhhh
Confidence 6677777777766665552 5666555555555543333
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.7e-08 Score=105.21 Aligned_cols=631 Identities=13% Similarity=0.191 Sum_probs=330.9
Q ss_pred CCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChH-h
Q 002664 186 FKFRPAFTAYTTLIGALATVRESNLMLNLFHQMQELGYEVSVHLFTTLIRVFAREGRVDDALFLLDEMKNNAFSVDIV-L 264 (895)
Q Consensus 186 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~ 264 (895)
.|+.|+. -.+++.+.+ -.++.+.++...+.+.. +...-+..+...+........+..++-..++.+ .|+.. .
T Consensus 507 vGyTPdy---mflLq~l~r-~sPD~~~qFa~~l~Q~~--~~~~die~I~DlFme~N~iQq~TSFLLdaLK~~-~Pd~g~L 579 (1666)
T KOG0985|consen 507 VGYTPDY---MFLLQQLKR-SSPDQALQFAMMLVQDE--EPLADIEQIVDLFMELNLIQQCTSFLLDALKLN-SPDEGHL 579 (1666)
T ss_pred cCCCccH---HHHHHHHHc-cChhHHHHHHHHhhccC--CCcccHHHHHHHHHHHHhhhhhHHHHHHHhcCC-ChhhhhH
Confidence 3445543 233333333 45556666555555432 122334555556666666666666665555543 33322 2
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCCHHhHHH-----HH
Q 002664 265 YNVCIDCFGKVGKVDMAWKFFHEMKAQGVAPDDVTYTSMIGVLCKSKRLEEAVAMFEQMDRNREVPCAYAYNT-----MI 339 (895)
Q Consensus 265 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-----l~ 339 (895)
-..++..-.. .|-++-+.+...+.- ...-+..+...|.+.|-+..|++.|..+.... -..+.+. .+
T Consensus 580 QTrLLE~NL~-----~aPqVADAILgN~mF-tHyDra~IAqLCEKAGL~qraLehytDl~DIK---R~vVhth~L~pEwL 650 (1666)
T KOG0985|consen 580 QTRLLEMNLV-----HAPQVADAILGNDMF-THYDRAEIAQLCEKAGLLQRALEHYTDLYDIK---RVVVHTHLLNPEWL 650 (1666)
T ss_pred HHHHHHHHhc-----cchHHHHHHHhcccc-ccccHHHHHHHHHhcchHHHHHHhcccHHHHH---HHHHHhccCCHHHH
Confidence 2223322211 122222222222211 11225667778889999999998877654311 1111111 12
Q ss_pred HHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc------------CCCCCHHHHHHH
Q 002664 340 MGYGSVGKFDEAFSLFERLKQKGCIPSVIAYNSLLTCLGKKGRVTEAMKIFEAMKK------------DARPNNTTYNVL 407 (895)
Q Consensus 340 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------------~~~~~~~~~~~l 407 (895)
..|...-.++.+.+.++.|...++..+..+...+..-|...=-.+.-+++|+..+. ....|+......
T Consensus 651 v~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KY 730 (1666)
T KOG0985|consen 651 VNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKY 730 (1666)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHH
Confidence 34555667889999999999888777777776777777766666777777776543 246788888899
Q ss_pred HHHHHhcCCHHHHHHHHHHH------------HHCCC---CC-----ChhhHHHHHHHHHhcCChhHHHHHHHHh-----
Q 002664 408 IDMLCKAGNFEDALKFRDAM------------KEAGL---FP-----NVMTVNIMVDRLCKAQKLDEAFSIFEGM----- 462 (895)
Q Consensus 408 ~~~~~~~g~~~~A~~~~~~~------------~~~~~---~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~----- 462 (895)
|.+.|+.|++.+..++.++- .+..+ .| |...+-.=+-.|.-.++..+-++++-+-
T Consensus 731 IqAA~kt~QikEvERicresn~YdpErvKNfLkeAkL~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~ 810 (1666)
T KOG0985|consen 731 IQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSR 810 (1666)
T ss_pred HHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhccccccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcc
Confidence 99999999998887765542 11111 01 1111111111222223333333333211
Q ss_pred --------hhCCCCCC-----------hhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHhcCCHH
Q 002664 463 --------DHKTCTPD-----------AVTFCSLIDGLGKNGRVDDAYKFYEKMLDTDQIPNAILYTSLIRNFFKHGRKE 523 (895)
Q Consensus 463 --------~~~~~~~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 523 (895)
...++..+ ......+..-..+.+++.--..+++..+..|. .++.++++++..|...++-.
T Consensus 811 ~p~VvG~LLD~dC~E~~ik~Li~~v~gq~~~deLv~EvEkRNRLklLlp~LE~~i~eG~-~d~a~hnAlaKIyIDSNNnP 889 (1666)
T KOG0985|consen 811 TPQVVGALLDVDCSEDFIKNLILSVRGQFPVDELVEEVEKRNRLKLLLPWLESLIQEGS-QDPATHNALAKIYIDSNNNP 889 (1666)
T ss_pred cchhhhhhhcCCCcHHHHHHHHHHHhccCChHHHHHHHHhhhhHHHHHHHHHHHHhccC-cchHHHhhhhheeecCCCCh
Confidence 11111100 00011223334455566666667777777775 37778888888887766543
Q ss_pred HHH-H---HHHHH-----HH-c-----------C--------CCCCHhhHHHHHHHHHHcCChhHH-----------HHH
Q 002664 524 DGH-K---IYKEM-----VQ-R-----------G--------CSPDLMLLNTYMDCVFKAGETEKG-----------RAL 563 (895)
Q Consensus 524 ~A~-~---~~~~~-----~~-~-----------~--------~~~~~~~~~~l~~~~~~~~~~~~a-----------~~~ 563 (895)
+-. + .|+.. -+ + | +......+......+.+..+.+-= +.+
T Consensus 890 E~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqL 969 (1666)
T KOG0985|consen 890 ERFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQL 969 (1666)
T ss_pred HHhcccCCcchhhHHhhhhcccCCceEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHH
Confidence 321 0 11100 00 0 0 000001111122222222221111 111
Q ss_pred HHHHHHCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--CCHHhHHHHHHHHHccCChHHHHHHHHHHHH
Q 002664 564 FEEIKAQGF--VPDVQSYSILIHGLVKAGFAHETDQLFYAMKKQGCV--LDTRAYNTVVDGFCKSGKVNKAYQLLEEMKT 639 (895)
Q Consensus 564 ~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 639 (895)
.++....++ ..|+...+.-..++...+.+.+-.++++++.-.+-. .+...-+.|+-.- -..+.....++.+++-.
T Consensus 970 iDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtA-ikad~trVm~YI~rLdn 1048 (1666)
T KOG0985|consen 970 IDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTA-IKADRTRVMEYINRLDN 1048 (1666)
T ss_pred HHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHH-hhcChHHHHHHHHHhcc
Confidence 122211111 112223333334444444444444444444321100 0011111111111 11222333333333322
Q ss_pred CCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHH
Q 002664 640 KGHYPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNTVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNAYTW 719 (895)
Q Consensus 640 ~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 719 (895)
-+. |+ +.......+-+++|..+|++.. .+..+...|+. ..++.+.|.+.-++. ..+..|
T Consensus 1049 yDa-~~------ia~iai~~~LyEEAF~ifkkf~-----~n~~A~~VLie---~i~~ldRA~efAe~~------n~p~vW 1107 (1666)
T KOG0985|consen 1049 YDA-PD------IAEIAIENQLYEEAFAIFKKFD-----MNVSAIQVLIE---NIGSLDRAYEFAERC------NEPAVW 1107 (1666)
T ss_pred CCc-hh------HHHHHhhhhHHHHHHHHHHHhc-----ccHHHHHHHHH---HhhhHHHHHHHHHhh------CChHHH
Confidence 110 11 1222334445666666665432 23344444443 235566666665553 246788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 002664 720 NCLLDALVKAEEISEAFVCFQSMKDLKCTPNHVTYSIIINGLCRVRKFNKAFVFWQEMQKQGFKPNTITYTTMISGLAKA 799 (895)
Q Consensus 720 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 799 (895)
..++.+-...|.+.+|++-|-+. .|+..|.-+++...+.|+|++-..++..++++.-+|...+ .|+.+|.+.
T Consensus 1108 sqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~--eLi~AyAkt 1179 (1666)
T KOG0985|consen 1108 SQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDS--ELIFAYAKT 1179 (1666)
T ss_pred HHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchH--HHHHHHHHh
Confidence 89999999999999998877543 3556788899999999999999999888887766665544 688889999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHH
Q 002664 800 GNITEANGLFERFKENGGVPDSACYNAMMEGLSNANRAMDAYTLFEETRRKGFNIHTKTCVILLDALHKAECLEQAAIVG 879 (895)
Q Consensus 800 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 879 (895)
+++.+-.++ + .-|+.......++-++..|.++.|.-+|..+ ..+..|+..+...|.++.|.-..
T Consensus 1180 ~rl~elE~f----i---~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AVD~a 1243 (1666)
T KOG0985|consen 1180 NRLTELEEF----I---AGPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGAVDAA 1243 (1666)
T ss_pred chHHHHHHH----h---cCCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHHHh
Confidence 888776543 3 3478888888999999999999887777654 34667888888888888776433
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.1e-11 Score=114.17 Aligned_cols=297 Identities=12% Similarity=0.078 Sum_probs=214.3
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCH---HhHHHHHHHHHccCCHHHH
Q 002664 589 AGFAHETDQLFYAMKKQGCVLDTRAYNTVVDGFCKSGKVNKAYQLLEEMKTKGHYPTV---VTYGSVIDGLAKIDRLDEA 665 (895)
Q Consensus 589 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~~~~~~A 665 (895)
..+.++|.++|-+|.+.. +....+-.+|.+.|.+.|..+.|+.+.+.+.+..-.+.. .....+..-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 467788888888888753 334455567888888888888888888888765211111 1334466667888888999
Q ss_pred HHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 002664 666 YMLFEEAKSKGIELNTVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPN----AYTWNCLLDALVKAEEISEAFVCFQS 741 (895)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~ 741 (895)
..+|....+.+ ..-......|+..|....+|++|++.-+++.+.+-.+. ...|.-|...+....+.+.|..++.+
T Consensus 127 E~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 127 EDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 99998887754 33455677788889999999999999998888554442 23455677777778889999999999
Q ss_pred HHhcCCCCCHH-HHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 002664 742 MKDLKCTPNHV-TYSIIINGLCRVRKFNKAFVFWQEMQKQGFKPNTITYTTMISGLAKAGNITEANGLFERFKENGGVPD 820 (895)
Q Consensus 742 ~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 820 (895)
..+.+ |+.. .--.+.+.....|+++.|.+.++...+++..--..+...|..+|...|+.++....+.++.+ ..+.
T Consensus 206 Alqa~--~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~--~~~g 281 (389)
T COG2956 206 ALQAD--KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME--TNTG 281 (389)
T ss_pred HHhhC--ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--ccCC
Confidence 98844 4432 33357788889999999999999998875444467788888899999999999999999988 4555
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh---cCCHHHHHHHHHHHHHHHHhhhhhh
Q 002664 821 SACYNAMMEGLSNANRAMDAYTLFEETRRKGFNIHTKTCVILLDALHK---AECLEQAAIVGAVLRETAKSQHAAR 893 (895)
Q Consensus 821 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~l~~~~~~~~~~~ 893 (895)
...-..+........-.+.|..++.+-+.+ .|+...+..|+..-.. -|++.+..-+.+.+.....++.|.+
T Consensus 282 ~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~~Y 355 (389)
T COG2956 282 ADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKPRY 355 (389)
T ss_pred ccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcCCc
Confidence 555566666555554555666665555555 5777777766665533 3668888888888888888877765
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.2e-09 Score=112.85 Aligned_cols=430 Identities=11% Similarity=0.033 Sum_probs=253.0
Q ss_pred CCHHhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCC--CCCHHHHHHH
Q 002664 330 PCAYAYNTMIMGYGSVGKFDEAFSLFERLKQKGCIPSVIAYNSLLTCLGKKGRVTEAMKIFEAMKKDA--RPNNTTYNVL 407 (895)
Q Consensus 330 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l 407 (895)
.+...|..|.-+....|+++.+.+.|++....-+ .....|..+...|...|.-..|..+++...... |+++..+...
T Consensus 321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~-~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lma 399 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSF-GEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMA 399 (799)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh-hhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHH
Confidence 4677788888888888999999999988876433 356678888888888888888999888776544 6677777766
Q ss_pred HHHHHh-cCCHHHHHHHHHHHHHC--CC--CCChhhHHHHHHHHHhc-----------CChhHHHHHHHHhhhCCCCCCh
Q 002664 408 IDMLCK-AGNFEDALKFRDAMKEA--GL--FPNVMTVNIMVDRLCKA-----------QKLDEAFSIFEGMDHKTCTPDA 471 (895)
Q Consensus 408 ~~~~~~-~g~~~~A~~~~~~~~~~--~~--~~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~~~~~~~~~ 471 (895)
...|.+ .+.+++++.+..++.+. +. ......|..+.-+|... ....++.+.+++..+.+.. |+
T Consensus 400 sklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~-dp 478 (799)
T KOG4162|consen 400 SKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT-DP 478 (799)
T ss_pred HHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC-Cc
Confidence 666654 57788888877777662 11 11233444444444322 1134667777777776533 55
Q ss_pred hhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHH
Q 002664 472 VTFCSLIDGLGKNGRVDDAYKFYEKMLDTDQIPNAILYTSLIRNFFKHGRKEDGHKIYKEMVQRGCSPDLMLLNTYMDCV 551 (895)
Q Consensus 472 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 551 (895)
.+...+.--|...++++.|.+..++.++.+...+...|..++..+...+++.+|+.+.+..+..- ..|......-+..-
T Consensus 479 ~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l~~~~~~i~ 557 (799)
T KOG4162|consen 479 LVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHVLMDGKIHIE 557 (799)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhhchhhhhhh
Confidence 55555666777888899999999998888767788888888888888889999988888777641 22222222222223
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH--cCCCCCHHhHHHHHHHHHccC---C
Q 002664 552 FKAGETEKGRALFEEIKAQGFVPDVQSYSILIHGLVKAGFAHETDQLFYAMKK--QGCVLDTRAYNTVVDGFCKSG---K 626 (895)
Q Consensus 552 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g---~ 626 (895)
...++.+++......+...- -+..... ..++-.........+.- ........++..+.......+ .
T Consensus 558 ~~~~~~e~~l~t~~~~L~~w--e~~~~~q-------~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~ 628 (799)
T KOG4162|consen 558 LTFNDREEALDTCIHKLALW--EAEYGVQ-------QTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAG 628 (799)
T ss_pred hhcccHHHHHHHHHHHHHHH--HhhhhHh-------hhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcc
Confidence 33556666655544443210 0000000 00000111111111100 000111122222222111111 1
Q ss_pred hHHHHHHHHHHHHCCCCCC------HHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHH
Q 002664 627 VNKAYQLLEEMKTKGHYPT------VVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNTVIYSSLIDGFGKVGRIDEA 700 (895)
Q Consensus 627 ~~~A~~~~~~~~~~~~~p~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 700 (895)
.+.. +...... ..|+ ...|......+.+.+..++|...+.++.... +.....|...+..+...|..++|
T Consensus 629 se~~---Lp~s~~~-~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA 703 (799)
T KOG4162|consen 629 SELK---LPSSTVL-PGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEA 703 (799)
T ss_pred cccc---cCccccc-CCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHH
Confidence 1111 1110000 1122 1234455556666677777776666666543 44555666666667777777777
Q ss_pred HHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHH--HHHHHHhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 002664 701 YLIMEELMQKGLTP-NAYTWNCLLDALVKAEEISEAFV--CFQSMKDLKCTPNHVTYSIIINGLCRVRKFNKAFVFWQEM 777 (895)
Q Consensus 701 ~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 777 (895)
.+.|...+. +.| ++....+++.++.+.|+..-|.. ++..+.+.+ +.++..|..++..+...|+.+.|-+.|+..
T Consensus 704 ~~af~~Al~--ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa 780 (799)
T KOG4162|consen 704 KEAFLVALA--LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAA 780 (799)
T ss_pred HHHHHHHHh--cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHH
Confidence 777777766 344 56666777777777776666665 777777644 345567777777777777777777777766
Q ss_pred HH
Q 002664 778 QK 779 (895)
Q Consensus 778 ~~ 779 (895)
.+
T Consensus 781 ~q 782 (799)
T KOG4162|consen 781 LQ 782 (799)
T ss_pred Hh
Confidence 65
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.54 E-value=5.4e-11 Score=115.29 Aligned_cols=286 Identities=14% Similarity=0.118 Sum_probs=190.8
Q ss_pred hcCCHhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 002664 309 KSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLFERLKQKGCIPSVIAYNSLLTCLGKKGRVTEAMK 388 (895)
Q Consensus 309 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 388 (895)
..|+|..|.++..+-.+.+.. ....|..-+++--..|+.+.+-.++.++.+....++...+.+..+.....|+++.|..
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 468888888888877666554 3455666666777788888888888888876445566677777888888888888888
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh-------hhHHHHHHHHHhcCChhHHHHHHHH
Q 002664 389 IFEAMKKDARPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEAGLFPNV-------MTVNIMVDRLCKAQKLDEAFSIFEG 461 (895)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~ 461 (895)
-..++....|.++.......++|.+.|++.....++.++.+.|.-.+. .+|..+++-....+..+.-...++.
T Consensus 175 ~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 175 NVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 888888888888888999999999999999999999999888765554 2445555555555555555556665
Q ss_pred hhhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 002664 462 MDHKTCTPDAVTFCSLIDGLGKNGRVDDAYKFYEKMLDTDQIPNAILYTSLIRNFFKHGRKEDGHKIYKEMVQRGCSPDL 541 (895)
Q Consensus 462 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 541 (895)
.... ...++..-.+++.-+.+.|+.++|.++.++.+++...++ .. ......+.++...-++..+...... +.++
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~-~~~~~l~~~d~~~l~k~~e~~l~~h-~~~p 328 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LC-RLIPRLRPGDPEPLIKAAEKWLKQH-PEDP 328 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HH-HHHhhcCCCCchHHHHHHHHHHHhC-CCCh
Confidence 5443 233455566667777777777777777777777654333 11 1123344555555555555555441 3344
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 002664 542 MLLNTYMDCVFKAGETEKGRALFEEIKAQGFVPDVQSYSILIHGLVKAGFAHETDQLFYAMK 603 (895)
Q Consensus 542 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 603 (895)
..+.++...|.+.+.+.+|...|+...+. .|+..+|..+.+.+.+.|+..+|.+..++..
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 55556666666666666666666655554 4566666666666666666666666655544
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.54 E-value=5.3e-11 Score=115.36 Aligned_cols=288 Identities=14% Similarity=0.142 Sum_probs=220.0
Q ss_pred hcCChhHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHH
Q 002664 239 REGRVDDALFLLDEMKNNAFSVDIVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGVAPDDVTYTSMIGVLCKSKRLEEAVA 318 (895)
Q Consensus 239 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~ 318 (895)
-.|+|..|.....+-.+.+ +.....|..-+++--+.|+.+.+-.++.+..+....++...+-+........|+++.|..
T Consensus 96 ~eG~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred hcCcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 4688888888888877765 333445666667777888888998888888876335566667777788888899999998
Q ss_pred HHHHHhhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHH
Q 002664 319 MFEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLFERLKQKGCIPSV-------IAYNSLLTCLGKKGRVTEAMKIFE 391 (895)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~ 391 (895)
-.++..+.++. +.........+|.+.|++.....++..+.+.|.-.+. .+|..+++-....+..+.-.+.++
T Consensus 175 ~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~ 253 (400)
T COG3071 175 NVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK 253 (400)
T ss_pred HHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 88888888776 7778888888899999999999999999888765443 366677776666677777777788
Q ss_pred HHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCh
Q 002664 392 AMKKDARPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEAGLFPNVMTVNIMVDRLCKAQKLDEAFSIFEGMDHKTCTPDA 471 (895)
Q Consensus 392 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 471 (895)
........++..-..++.-+.+.|+.++|.++..+..+.+..|+ . ...-...+-++.+.-.+..++..+.. +.++
T Consensus 254 ~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L-~~~~~~l~~~d~~~l~k~~e~~l~~h-~~~p 328 (400)
T COG3071 254 NQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---L-CRLIPRLRPGDPEPLIKAAEKWLKQH-PEDP 328 (400)
T ss_pred hccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---H-HHHHhhcCCCCchHHHHHHHHHHHhC-CCCh
Confidence 77777777888888888889999999999998888888765544 1 12223446677777777776666552 3356
Q ss_pred hhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 002664 472 VTFCSLIDGLGKNGRVDDAYKFYEKMLDTDQIPNAILYTSLIRNFFKHGRKEDGHKIYKEMVQR 535 (895)
Q Consensus 472 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 535 (895)
..+.+++..|.+.+.+.+|...|+..++. .|+...|..+...+.+.|+..+|...+++.+..
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 77888888888888888888888888776 467888888888888888888888888877644
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.2e-08 Score=103.96 Aligned_cols=191 Identities=18% Similarity=0.226 Sum_probs=103.1
Q ss_pred HHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCCHHH
Q 002664 271 CFGKVGKVDMAWKFFHEMKAQGVAPDDVTYTSMIGVLCKSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFDE 350 (895)
Q Consensus 271 ~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 350 (895)
+-.....+.+|+.+++.+.++.. -..-|..+...|...|+++.|.++|-+. ..++--|..|.+.|+++.
T Consensus 741 aai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~d 809 (1636)
T KOG3616|consen 741 AAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWED 809 (1636)
T ss_pred HHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHH
Confidence 33445566666666666555421 2233555556666667777777666543 223445566667777777
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 002664 351 AFSLFERLKQKGCIPSVIAYNSLLTCLGKKGRVTEAMKIFEAMKKDARPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEA 430 (895)
Q Consensus 351 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 430 (895)
|.++-.+... .......|..-..-+-+.|++.+|.++|-.+.. | ...|.+|-+.|..+..+++..+-...
T Consensus 810 a~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~~---p-----~~aiqmydk~~~~ddmirlv~k~h~d 879 (1636)
T KOG3616|consen 810 AFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIGE---P-----DKAIQMYDKHGLDDDMIRLVEKHHGD 879 (1636)
T ss_pred HHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEccC---c-----hHHHHHHHhhCcchHHHHHHHHhChh
Confidence 6666555432 233444555555556666666666666543321 1 23355666666666666655543221
Q ss_pred CCCCChhhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhhcCCHHHHHHHH
Q 002664 431 GLFPNVMTVNIMVDRLCKAQKLDEAFSIFEGMDHKTCTPDAVTFCSLIDGLGKNGRVDDAYKFY 494 (895)
Q Consensus 431 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 494 (895)
.-..|...+..-|...|++..|...|-+.. -|.+.+++|-..+.+++|.++-
T Consensus 880 ---~l~dt~~~f~~e~e~~g~lkaae~~flea~---------d~kaavnmyk~s~lw~dayria 931 (1636)
T KOG3616|consen 880 ---HLHDTHKHFAKELEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASELWEDAYRIA 931 (1636)
T ss_pred ---hhhHHHHHHHHHHHhccChhHHHHHHHhhh---------hHHHHHHHhhhhhhHHHHHHHH
Confidence 112344555666666677766666554322 2344455555555666555543
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.51 E-value=6e-09 Score=101.10 Aligned_cols=269 Identities=14% Similarity=0.062 Sum_probs=145.4
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHhHHH
Q 002664 572 FVPDVQSYSILIHGLVKAGFAHETDQLFYAMKKQGCVLDTRAYNTVVDGFCKSGKVNKAYQLLEEMKTKGHYPTVVTYGS 651 (895)
Q Consensus 572 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 651 (895)
++-|......+...+...|+..+|...|++....+ +.+........-.+.+.|+++....+...+....- .+..-|..
T Consensus 228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d-py~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~-~ta~~wfV 305 (564)
T KOG1174|consen 228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN-PDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVK-YTASHWFV 305 (564)
T ss_pred CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC-hhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhh-cchhhhhh
Confidence 34445555666666666666666666666655432 11122222223334455666666555555554311 12222222
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcC
Q 002664 652 VIDGLAKIDRLDEAYMLFEEAKSKGIELNTVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTP-NAYTWNCLLDALVKAE 730 (895)
Q Consensus 652 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g 730 (895)
-...+...++++.|+.+-++.++.+ +.+...+..-+..+...|+.++|.-.|+.++. +.| +..+|..|+.+|...|
T Consensus 306 ~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~ 382 (564)
T KOG1174|consen 306 HAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQK 382 (564)
T ss_pred hhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhc
Confidence 2333445556666666666666543 22344444445556666666666666666665 333 5666666666666666
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHH-HHHHh-cCCHhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHH
Q 002664 731 EISEAFVCFQSMKDLKCTPNHVTYSIII-NGLCR-VRKFNKAFVFWQEMQKQGFKPN-TITYTTMISGLAKAGNITEANG 807 (895)
Q Consensus 731 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~-~~~~~-~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~ 807 (895)
.+.+|.-+.+...+. .+.+..+...+. ..|.. ..--++|.+++++.+. +.|+ ....+.+...+...|..+.++.
T Consensus 383 ~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~--~~P~Y~~AV~~~AEL~~~Eg~~~D~i~ 459 (564)
T KOG1174|consen 383 RFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK--INPIYTPAVNLIAELCQVEGPTKDIIK 459 (564)
T ss_pred hHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc--cCCccHHHHHHHHHHHHhhCccchHHH
Confidence 666666666555541 223333443332 22222 2233566666666654 4454 2344445555666666666666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 002664 808 LFERFKENGGVPDSACYNAMMEGLSNANRAMDAYTLFEETRRK 850 (895)
Q Consensus 808 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 850 (895)
++++.+. ..||......|+..+...+.+++|...|..++..
T Consensus 460 LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 460 LLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred HHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 6666665 5566666666666666666666666666666655
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1e-07 Score=99.19 Aligned_cols=220 Identities=18% Similarity=0.233 Sum_probs=158.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChh
Q 002664 374 LTCLGKKGRVTEAMKIFEAMKKDARPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEAGLFPNVMTVNIMVDRLCKAQKLD 453 (895)
Q Consensus 374 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 453 (895)
...+...|+++.|+..|-+... ....+.+......|.+|+.+++.+.+... -...|..+.+.|...|+++
T Consensus 713 g~hl~~~~q~daainhfiea~~--------~~kaieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe 782 (1636)
T KOG3616|consen 713 GDHLEQIGQLDAAINHFIEANC--------LIKAIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFE 782 (1636)
T ss_pred hHHHHHHHhHHHHHHHHHHhhh--------HHHHHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHH
Confidence 3445667888888877755432 34456677788999999999998887542 3445778889999999999
Q ss_pred HHHHHHHHhhhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002664 454 EAFSIFEGMDHKTCTPDAVTFCSLIDGLGKNGRVDDAYKFYEKMLDTDQIPNAILYTSLIRNFFKHGRKEDGHKIYKEMV 533 (895)
Q Consensus 454 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 533 (895)
.|.++|-+. ..+.-.+.+|.+.|++++|.++-.+.. ++......|..-..-+-+.|++.+|.++|-.+.
T Consensus 783 ~ae~lf~e~---------~~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~ 851 (1636)
T KOG3616|consen 783 IAEELFTEA---------DLFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG 851 (1636)
T ss_pred HHHHHHHhc---------chhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc
Confidence 999998643 234567889999999999999887765 344566667777777888999999988875442
Q ss_pred HcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHh
Q 002664 534 QRGCSPDLMLLNTYMDCVFKAGETEKGRALFEEIKAQGFVPDVQSYSILIHGLVKAGFAHETDQLFYAMKKQGCVLDTRA 613 (895)
Q Consensus 534 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 613 (895)
.|+ ..+..|-+.|..+..+.+..+.... .-..|...+..-|...|+...|...|-+.. -
T Consensus 852 ----~p~-----~aiqmydk~~~~ddmirlv~k~h~d---~l~dt~~~f~~e~e~~g~lkaae~~flea~---------d 910 (1636)
T KOG3616|consen 852 ----EPD-----KAIQMYDKHGLDDDMIRLVEKHHGD---HLHDTHKHFAKELEAEGDLKAAEEHFLEAG---------D 910 (1636)
T ss_pred ----Cch-----HHHHHHHhhCcchHHHHHHHHhChh---hhhHHHHHHHHHHHhccChhHHHHHHHhhh---------h
Confidence 233 3456778888888888877664321 123455667777888899998888775443 2
Q ss_pred HHHHHHHHHccCChHHHHHHHH
Q 002664 614 YNTVVDGFCKSGKVNKAYQLLE 635 (895)
Q Consensus 614 ~~~l~~~~~~~g~~~~A~~~~~ 635 (895)
|...++.|-.++.+++|.++-+
T Consensus 911 ~kaavnmyk~s~lw~dayriak 932 (1636)
T KOG3616|consen 911 FKAAVNMYKASELWEDAYRIAK 932 (1636)
T ss_pred HHHHHHHhhhhhhHHHHHHHHh
Confidence 5566677777777777766644
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.7e-08 Score=106.21 Aligned_cols=243 Identities=14% Similarity=0.179 Sum_probs=144.2
Q ss_pred HhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHH------------HHcCCCcCHHHHHHHHH
Q 002664 168 VKSKMLREAFDIIQTMRKFKFRPAFTAYTTLIGALATVRESNLMLNLFHQM------------QELGYEVSVHLFTTLIR 235 (895)
Q Consensus 168 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~------------~~~~~~~~~~~~~~l~~ 235 (895)
.--|+.+.|..-++.+. +...|..+.+.+.+..+.+-|.-++..| .+.| + ..-..++-
T Consensus 739 vtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~---~-e~eakvAv 808 (1416)
T KOG3617|consen 739 VTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNG---E-EDEAKVAV 808 (1416)
T ss_pred EEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCC---c-chhhHHHH
Confidence 34566666655555443 3345666666666655555554444333 2221 1 22233344
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhH
Q 002664 236 VFAREGRVDDALFLLDEMKNNAFSVDIVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGVAPDDVTYTSMIGVLCKSKRLEE 315 (895)
Q Consensus 236 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~ 315 (895)
.-...|.+++|..+|.+-++. ..+=..|-..|.+++|.++-+.--+.. -..||.....-+...++.+.
T Consensus 809 LAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA~~Lear~Di~~ 876 (1416)
T KOG3617|consen 809 LAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYAKYLEARRDIEA 876 (1416)
T ss_pred HHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHHHHHHhhccHHH
Confidence 445778888888888877653 344456677788888888765432221 23567777777777888888
Q ss_pred HHHHHHHHhhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 002664 316 AVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLFERLKQKGCIPSVIAYNSLLTCLGKKGRVTEAMKIFEAMKK 395 (895)
Q Consensus 316 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 395 (895)
|+++|++... |-...+..|. .++.....+.+++. |...|..-...+-..|+.+.|+.+|...+.
T Consensus 877 AleyyEK~~~----hafev~rmL~------e~p~~~e~Yv~~~~------d~~L~~WWgqYlES~GemdaAl~~Y~~A~D 940 (1416)
T KOG3617|consen 877 ALEYYEKAGV----HAFEVFRMLK------EYPKQIEQYVRRKR------DESLYSWWGQYLESVGEMDAALSFYSSAKD 940 (1416)
T ss_pred HHHHHHhcCC----hHHHHHHHHH------hChHHHHHHHHhcc------chHHHHHHHHHHhcccchHHHHHHHHHhhh
Confidence 8888887432 1111111111 11222222222222 445566666666677888888888877665
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHh
Q 002664 396 DARPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEAGLFPNVMTVNIMVDRLCKAQKLDEAFSIFEGM 462 (895)
Q Consensus 396 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 462 (895)
|..+++..|-.|+.++|-++.++- .|......+.+.|...|++.+|..+|.+.
T Consensus 941 --------~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 941 --------YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred --------hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 777777777788888877776543 24445566777777778888877777654
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.2e-08 Score=103.89 Aligned_cols=462 Identities=13% Similarity=0.098 Sum_probs=215.1
Q ss_pred HHHHHhcCCHhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 002664 304 IGVLCKSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLFERLKQKGCIPSVIAYNSLLTCLGKKGRV 383 (895)
Q Consensus 304 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 383 (895)
++.+...|++++|.+...+++..++. +..++..-+-++.+.+.+++|+.+.+.-... .-+.+.+..-+.+..+.+..
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~pd-d~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrlnk~ 95 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIVPD-DEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLNKL 95 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcCCC-cHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHcccH
Confidence 34455666677777776666666543 5556666666666666777666433321110 00111112223344467777
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH-HHhcCChhHHHHHHHHh
Q 002664 384 TEAMKIFEAMKKDARPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEAGLFPNVMTVNIMVDR-LCKAQKLDEAFSIFEGM 462 (895)
Q Consensus 384 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~ 462 (895)
++|+..++.. .+.+..+...-++.+.+.|++++|+.+|+.+.+.+.. + +...+.+ +...+..-.+. +++..
T Consensus 96 Dealk~~~~~---~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~d-d---~d~~~r~nl~a~~a~l~~~-~~q~v 167 (652)
T KOG2376|consen 96 DEALKTLKGL---DRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSD-D---QDEERRANLLAVAAALQVQ-LLQSV 167 (652)
T ss_pred HHHHHHHhcc---cccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc-h---HHHHHHHHHHHHHHhhhHH-HHHhc
Confidence 7777776622 2333445566667777777777777777777665432 1 1111111 11111111111 22222
Q ss_pred hhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCC------cc-h-------hhHHHHHHHHHhcCCHHHHHHH
Q 002664 463 DHKTCTPDAVTFCSLIDGLGKNGRVDDAYKFYEKMLDTDQI------PN-A-------ILYTSLIRNFFKHGRKEDGHKI 528 (895)
Q Consensus 463 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------~~-~-------~~~~~l~~~~~~~~~~~~A~~~ 528 (895)
... ...+-..+......+...|++.+|++++..+.+.+.. .+ . ..-..+...+...|+.++|..+
T Consensus 168 ~~v-~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~i 246 (652)
T KOG2376|consen 168 PEV-PEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSI 246 (652)
T ss_pred cCC-CcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 111 1112223344455566778888888887777332110 00 0 1123455556666777777777
Q ss_pred HHHHHHcCCCCCHhhHHHHHHHHHH---cCChhH--HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 002664 529 YKEMVQRGCSPDLMLLNTYMDCVFK---AGETEK--GRALFEEIKAQGFVPDVQSYSILIHGLVKAGFAHETDQLFYAMK 603 (895)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~--a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 603 (895)
|...++.. ++|.........-+.. -.++-. ++..++... ..-+......+.
T Consensus 247 y~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~-----------------------~~l~~~~l~~Ls 302 (652)
T KOG2376|consen 247 YVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQV-----------------------FKLAEFLLSKLS 302 (652)
T ss_pred HHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHH-----------------------HHhHHHHHHHHH
Confidence 77766654 3333222111111110 000000 000111000 001111111111
Q ss_pred HcCCCCCHHhHH-HHHHHHHccCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHH-HccCCHHHHHHHHHHHHHcCCCcCH
Q 002664 604 KQGCVLDTRAYN-TVVDGFCKSGKVNKAYQLLEEMKTKGHYPTVVTYGSVIDGL-AKIDRLDEAYMLFEEAKSKGIELNT 681 (895)
Q Consensus 604 ~~~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~~~~~~A~~~~~~~~~~~~~~~~ 681 (895)
.. .-.....| .++.. -.+..+.+.++....-. ..|....-..+..++ .+...+.++.+++...-+.......
T Consensus 303 ~~--qk~~i~~N~~lL~l--~tnk~~q~r~~~a~lp~--~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~ 376 (652)
T KOG2376|consen 303 KK--QKQAIYRNNALLAL--FTNKMDQVRELSASLPG--MSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSK 376 (652)
T ss_pred HH--HHHHHHHHHHHHHH--HhhhHHHHHHHHHhCCc--cCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhH
Confidence 11 00011111 11211 12333444433333221 123322222222222 2222466677777666655322234
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHH--------HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCCCCH
Q 002664 682 VIYSSLIDGFGKVGRIDEAYLIME--------ELMQKGLTPNAYTWNCLLDALVKAEEISEAFVCFQSMKDL--KCTPNH 751 (895)
Q Consensus 682 ~~~~~l~~~~~~~g~~~~A~~~~~--------~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~~ 751 (895)
.+...++......|+++.|++++. .+.+.+..|. +...+...+.+.++.+.|..++.+.+.. .-.+..
T Consensus 377 ~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s 454 (652)
T KOG2376|consen 377 VVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPG--TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGS 454 (652)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChh--HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccc
Confidence 455566667777888888888887 4444333333 3334555566666656566666555431 011111
Q ss_pred H----HHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 002664 752 V----TYSIIINGLCRVRKFNKAFVFWQEMQKQGFKPNTITYTTMISGLAKAGNITEANGLFER 811 (895)
Q Consensus 752 ~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 811 (895)
. ++.-++..-.+.|+-++|..+++++.+. .++|..+...++.+|+.. +.++|..+-..
T Consensus 455 ~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~-n~~d~~~l~~lV~a~~~~-d~eka~~l~k~ 516 (652)
T KOG2376|consen 455 IALLSLMREAAEFKLRHGNEEEASSLLEELVKF-NPNDTDLLVQLVTAYARL-DPEKAESLSKK 516 (652)
T ss_pred hHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHh-CCchHHHHHHHHHHHHhc-CHHHHHHHhhc
Confidence 2 2222333344557777777777777764 355667777777777655 56666655443
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.2e-08 Score=107.29 Aligned_cols=228 Identities=15% Similarity=0.233 Sum_probs=154.6
Q ss_pred cCChHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHccCCcchHHHHHHHHHHc--------CCCCChhhHHHHHHHHHhc
Q 002664 99 LKDVNLAINYFRWVERKTDQAHSLEAYNSLLMVMAVSKNFEPLEEILGEMSLA--------GIGPTNNTCIELVVSCVKS 170 (895)
Q Consensus 99 ~~~~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~--------~~~~~~~~~~~l~~~~~~~ 170 (895)
.|+.+.|++--+.+. +-.+|..|++.+.+.++.+-|.-++..|... ....+...-..........
T Consensus 741 iG~MD~AfksI~~Ik-------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieL 813 (1416)
T KOG3617|consen 741 IGSMDAAFKSIQFIK-------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIEL 813 (1416)
T ss_pred eccHHHHHHHHHHHh-------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHH
Confidence 477777777666655 4478999999999999999999999887432 1122223333344445678
Q ss_pred CChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHH
Q 002664 171 KMLREAFDIIQTMRKFKFRPAFTAYTTLIGALATVRESNLMLNLFHQMQELGYEVSVHLFTTLIRVFAREGRVDDALFLL 250 (895)
Q Consensus 171 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 250 (895)
|+.++|..+|.+-.+. ..|-..|...|.+++|.++-+.-... . -..+|...+.-+-..++.+.|++.|
T Consensus 814 gMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRi--H-Lr~Tyy~yA~~Lear~Di~~Aleyy 881 (1416)
T KOG3617|consen 814 GMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRI--H-LRNTYYNYAKYLEARRDIEAALEYY 881 (1416)
T ss_pred hhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccce--e-hhhhHHHHHHHHHhhccHHHHHHHH
Confidence 9999999999887643 44555677789999998876543222 1 2357888888888889999999988
Q ss_pred HHH----------HhCCC---------CCChHhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 002664 251 DEM----------KNNAF---------SVDIVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGVAPDDVTYTSMIGVLCKSK 311 (895)
Q Consensus 251 ~~~----------~~~~~---------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g 311 (895)
++. +...+ ..|...|.+....+-..|+.|.|+.+|...++ |.++++..|-+|
T Consensus 882 EK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qG 952 (1416)
T KOG3617|consen 882 EKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQG 952 (1416)
T ss_pred HhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeecc
Confidence 863 22111 23455666666666667777777777765543 455666777777
Q ss_pred CHhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 002664 312 RLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLFERLKQ 360 (895)
Q Consensus 312 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 360 (895)
+.++|-++-++- -|..+...|.+.|-..|++.+|...|.++..
T Consensus 953 k~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 953 KTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQA 995 (1416)
T ss_pred CchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 777777666553 2556666777777777777777777766543
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.2e-11 Score=113.82 Aligned_cols=229 Identities=12% Similarity=0.125 Sum_probs=122.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhc
Q 002664 161 IELVVSCVKSKMLREAFDIIQTMRKFKFRPAFTAYTTLIGALATVRESNLMLNLFHQMQELGYEVSVHLFTTLIRVFARE 240 (895)
Q Consensus 161 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 240 (895)
+.+...|.+.|.+.+|...|+...+. .|-+.+|..|..+|.+..++..|+.+|.+-.+. +|.++......++++-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 45666666666666666666655544 344455555556666666666666666555554 344444445555555555
Q ss_pred CChhHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHH
Q 002664 241 GRVDDALFLLDEMKNNAFSVDIVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGVAPDDVTYTSMIGVLCKSKRLEEAVAMF 320 (895)
Q Consensus 241 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 320 (895)
++.++|.++++...+.. +.++.....+...|.-.++.+.|+.+++++...|+. +...|..+.-+|.-.++++-++..|
T Consensus 304 ~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHH
Confidence 55555555555555543 333444444444455555555555555555555544 4444444444444555555555555
Q ss_pred HHHhhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCC
Q 002664 321 EQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLFERLKQKGCIPS--VIAYNSLLTCLGKKGRVTEAMKIFEAMKKDAR 398 (895)
Q Consensus 321 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 398 (895)
++.+ ..--.|+ ..+|..+.......||+..|.+.|+-.....+
T Consensus 382 ~RAl-----------------------------------stat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~ 426 (478)
T KOG1129|consen 382 QRAL-----------------------------------STATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDA 426 (478)
T ss_pred HHHH-----------------------------------hhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCc
Confidence 5444 3222222 23444555555555555555555555555555
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002664 399 PNNTTYNVLIDMLCKAGNFEDALKFRDAMKE 429 (895)
Q Consensus 399 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 429 (895)
.+..+++.|+-.-.+.|+.++|..++.....
T Consensus 427 ~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 427 QHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred chHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 5555566665555566666666666655554
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=7.8e-11 Score=130.75 Aligned_cols=179 Identities=11% Similarity=0.065 Sum_probs=91.1
Q ss_pred hhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHH
Q 002664 278 VDMAWKFFHEMKAQGVAPDDVTYTSMIGVLCKSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLFER 357 (895)
Q Consensus 278 ~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 357 (895)
+++|...++++.+.+.. +..++..+...+...|++++|+..|+++++.+|. +..++..++..+...|++++|...+++
T Consensus 320 ~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~ 397 (553)
T PRK12370 320 MIKAKEHAIKATELDHN-NPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINE 397 (553)
T ss_pred HHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 45566666665554322 4445555555555566666666666666555543 455555555556666666666666666
Q ss_pred HHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-
Q 002664 358 LKQKGCIPSVIAYNSLLTCLGKKGRVTEAMKIFEAMKKDA-RPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEAGLFPN- 435 (895)
Q Consensus 358 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~- 435 (895)
+.+.++. +...+..++..+...|++++|+..++++.... |.++..+..++.++...|++++|...+.++... .|+
T Consensus 398 Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~ 474 (553)
T PRK12370 398 CLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITG 474 (553)
T ss_pred HHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchh
Confidence 6555422 12222233333444555666666665554433 334444555555666666666666666555432 122
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHhh
Q 002664 436 VMTVNIMVDRLCKAQKLDEAFSIFEGMD 463 (895)
Q Consensus 436 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 463 (895)
....+.+...|+..| +.|...++.+.
T Consensus 475 ~~~~~~l~~~~~~~g--~~a~~~l~~ll 500 (553)
T PRK12370 475 LIAVNLLYAEYCQNS--ERALPTIREFL 500 (553)
T ss_pred HHHHHHHHHHHhccH--HHHHHHHHHHH
Confidence 222333334444444 34444444443
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.45 E-value=7.9e-09 Score=105.30 Aligned_cols=81 Identities=9% Similarity=0.107 Sum_probs=43.1
Q ss_pred CHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHhcCCHHHHHHHHH--------HHHHcCCCCCHhhHHHHHHHHHHcCCh
Q 002664 486 RVDDAYKFYEKMLDTDQIPNAILYTSLIRNFFKHGRKEDGHKIYK--------EMVQRGCSPDLMLLNTYMDCVFKAGET 557 (895)
Q Consensus 486 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~~~~ 557 (895)
.+.+|..++...-+..+.....+....+...+..|+++.|++++. .+.+.+. .+.+...+...+.+.++.
T Consensus 356 ~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~--~P~~V~aiv~l~~~~~~~ 433 (652)
T KOG2376|consen 356 KHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKH--LPGTVGAIVALYYKIKDN 433 (652)
T ss_pred HHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhcc--ChhHHHHHHHHHHhccCC
Confidence 455666666666655444334455556666667777777777766 3333222 223333444445555555
Q ss_pred hHHHHHHHHHH
Q 002664 558 EKGRALFEEIK 568 (895)
Q Consensus 558 ~~a~~~~~~~~ 568 (895)
+.|..++.+..
T Consensus 434 ~~a~~vl~~Ai 444 (652)
T KOG2376|consen 434 DSASAVLDSAI 444 (652)
T ss_pred ccHHHHHHHHH
Confidence 55555555443
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.5e-08 Score=98.50 Aligned_cols=288 Identities=15% Similarity=0.075 Sum_probs=159.1
Q ss_pred hcCChhHHHHHHHHHHh-CCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHhHH
Q 002664 239 REGRVDDALFLLDEMKN-NAFSVDIVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGVAPDDV-TYTSMIGVLCKSKRLEEA 316 (895)
Q Consensus 239 ~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A 316 (895)
-.++...|...+-.+.. ..++.|+.....+..++...|+.++|+..|++.... .|+.. ......-.+.+.|+++.-
T Consensus 208 ~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~ 285 (564)
T KOG1174|consen 208 FNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQD 285 (564)
T ss_pred HhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhH
Confidence 34444444444433322 223455666666777777777777777777766553 23332 122223334566666666
Q ss_pred HHHHHHHhhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcC
Q 002664 317 VAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLFERLKQKGCIPSVIAYNSLLTCLGKKGRVTEAMKIFEAMKKD 396 (895)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 396 (895)
..+...+...... ....|..-+.......++..|+.+-++.++.+. -+...+..-+..+...|+.++|.-.|+.....
T Consensus 286 ~~L~~~Lf~~~~~-ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~-r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L 363 (564)
T KOG1174|consen 286 SALMDYLFAKVKY-TASHWFVHAQLLYDEKKFERALNFVEKCIDSEP-RNHEALILKGRLLIALERHTQAVIAFRTAQML 363 (564)
T ss_pred HHHHHHHHhhhhc-chhhhhhhhhhhhhhhhHHHHHHHHHHHhccCc-ccchHHHhccHHHHhccchHHHHHHHHHHHhc
Confidence 6655555443211 333344444445556667777777776666542 24455555566666677777777777776666
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHH-HHHH-hcCChhHHHHHHHHhhhCCCCCC-hhh
Q 002664 397 ARPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEAGLFPNVMTVNIMV-DRLC-KAQKLDEAFSIFEGMDHKTCTPD-AVT 473 (895)
Q Consensus 397 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~g~~~~A~~~~~~~~~~~~~~~-~~~ 473 (895)
.|-+..+|..|+.+|...|++.+|.-+-+..... .+.+..+...+. ..+. ....-++|..++++.... .|+ ...
T Consensus 364 ap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~A 440 (564)
T KOG1174|consen 364 APYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPA 440 (564)
T ss_pred chhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHH
Confidence 6667777777777777777777766655544432 122334443332 1221 122345666666655544 222 234
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 002664 474 FCSLIDGLGKNGRVDDAYKFYEKMLDTDQIPNAILYTSLIRNFFKHGRKEDGHKIYKEMVQR 535 (895)
Q Consensus 474 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 535 (895)
...+...+...|...+++.++++.+.. .+|......|+..+...+.+.+|.+.|...+..
T Consensus 441 V~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 441 VNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 455555666666666666666666554 345666666666666666666666666666554
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.1e-10 Score=122.21 Aligned_cols=246 Identities=20% Similarity=0.183 Sum_probs=173.6
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHc-----CC-CcCHH-HHHHHHHHHHccCCHHHHHHHHHHHHH-----CCC-CC
Q 002664 648 TYGSVIDGLAKIDRLDEAYMLFEEAKSK-----GI-ELNTV-IYSSLIDGFGKVGRIDEAYLIMEELMQ-----KGL-TP 714 (895)
Q Consensus 648 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~-~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~-~p 714 (895)
+...+...|...|++++|..+++.+++. |. .|... ..+.+...|...+++++|..+|++++. .|- .|
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 4445666677777777777777766543 11 12222 333477788888888888888888876 121 12
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CC-CCCH-HHHHHHHHHHHhcCCHhHHHHHHHHHHHC---CCC
Q 002664 715 -NAYTWNCLLDALVKAEEISEAFVCFQSMKDL-----KC-TPNH-VTYSIIINGLCRVRKFNKAFVFWQEMQKQ---GFK 783 (895)
Q Consensus 715 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~-~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~ 783 (895)
-..+++.|..+|.+.|++++|..+++++.+. +. .|.. ..++.++..|+..+++++|..++++..+. -+.
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g 360 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG 360 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence 2456777888888999988888888776541 11 2222 23556777888899999999988877654 122
Q ss_pred CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---
Q 002664 784 PN----TITYTTMISGLAKAGNITEANGLFERFKEN-----G-GVP-DSACYNAMMEGLSNANRAMDAYTLFEETRR--- 849 (895)
Q Consensus 784 p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--- 849 (895)
++ ..+++.|...|...|++++|.++++++++. | ..+ ....++.|+..|.+.+++++|..+|++...
T Consensus 361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~ 440 (508)
T KOG1840|consen 361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMK 440 (508)
T ss_pred ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 22 358899999999999999999999998764 1 122 245677889999999999888888876432
Q ss_pred -C--CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhhhhhh
Q 002664 850 -K--GFNIHTKTCVILLDALHKAECLEQAAIVGAVLRETAKSQHAAR 893 (895)
Q Consensus 850 -~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~~~ 893 (895)
. +.|....++..|+.+|.+.|++|+|.++...+.....++.+..
T Consensus 441 ~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~~~~~~~~ 487 (508)
T KOG1840|consen 441 LCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNAREQRLGTA 487 (508)
T ss_pred HhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcCCCC
Confidence 1 2334456777899999999999999999999988877766543
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.2e-10 Score=115.48 Aligned_cols=198 Identities=15% Similarity=0.133 Sum_probs=134.2
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 002664 681 TVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNAYTWNCLLDALVKAEEISEAFVCFQSMKDLKCTPNHVTYSIIING 760 (895)
Q Consensus 681 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 760 (895)
...+..++..+...|++++|...++++++.. +.+...+..++..+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 4455566666777777777777777776632 2245666667777777777777777777777643 3344556666777
Q ss_pred HHhcCCHhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHH
Q 002664 761 LCRVRKFNKAFVFWQEMQKQGF-KPNTITYTTMISGLAKAGNITEANGLFERFKENGGVP-DSACYNAMMEGLSNANRAM 838 (895)
Q Consensus 761 ~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~ 838 (895)
+...|++++|.+.++++.+... ......+..+..++...|++++|...+++.++ ..| +...+..++..+...|+++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQ--IDPQRPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCChHHHHHHHHHHHHcCCHH
Confidence 7777777777777777765421 22344566677777777888888888887776 344 4566777777788888888
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002664 839 DAYTLFEETRRKGFNIHTKTCVILLDALHKAECLEQAAIVGAVLR 883 (895)
Q Consensus 839 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~l~ 883 (895)
+|...++++... .+.+...+..++..+...|+.++|....+.+.
T Consensus 187 ~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 187 DARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 888888877766 35566666677777777788888777555443
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.42 E-value=7.4e-09 Score=110.37 Aligned_cols=290 Identities=14% Similarity=0.156 Sum_probs=154.3
Q ss_pred HHhcCCHhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh-----cC
Q 002664 307 LCKSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLFERLKQKGCIPSVIAYNSLLTCLGK-----KG 381 (895)
Q Consensus 307 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~g 381 (895)
+...|++++|++.++.-...-+ .....+...+..+.+.|+.++|..++..+++.++ .+...|..+..+..- ..
T Consensus 14 l~e~g~~~~AL~~L~~~~~~I~-Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNP-dn~~Yy~~L~~~~g~~~~~~~~ 91 (517)
T PF12569_consen 14 LEEAGDYEEALEHLEKNEKQIL-DKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNP-DNYDYYRGLEEALGLQLQLSDE 91 (517)
T ss_pred HHHCCCHHHHHHHHHhhhhhCC-CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHhhhcccccc
Confidence 3444555555555544333211 1233334444455555555555555555555442 122233333333311 12
Q ss_pred CHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 002664 382 RVTEAMKIFEAMKKDARPNNTTYNVLIDMLCKAGNF-EDALKFRDAMKEAGLFPNVMTVNIMVDRLCKAQKLDEAFSIFE 460 (895)
Q Consensus 382 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 460 (895)
+.+...++|+++....|.....-..-+... .-..+ ..+..++..+...|+++ ++..+-..|....+.+-..+++.
T Consensus 92 ~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~-~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~~ 167 (517)
T PF12569_consen 92 DVEKLLELYDELAEKYPRSDAPRRLPLDFL-EGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESLVE 167 (517)
T ss_pred cHHHHHHHHHHHHHhCccccchhHhhcccC-CHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHHHH
Confidence 344455555555444433222211111111 11122 23344556666666543 34444444443444443444444
Q ss_pred HhhhC--------------CCCCCh--hhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHhcCCHHH
Q 002664 461 GMDHK--------------TCTPDA--VTFCSLIDGLGKNGRVDDAYKFYEKMLDTDQIPNAILYTSLIRNFFKHGRKED 524 (895)
Q Consensus 461 ~~~~~--------------~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 524 (895)
..... .-+|.. .++..+...|...|++++|+.+++++++..| ..+..|..-+..+-..|++.+
T Consensus 168 ~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htP-t~~ely~~KarilKh~G~~~~ 246 (517)
T PF12569_consen 168 EYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTP-TLVELYMTKARILKHAGDLKE 246 (517)
T ss_pred HHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHCCCHHH
Confidence 33211 012333 2446667778888888888888888888764 357778888888888888888
Q ss_pred HHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHH--------HHHHHHHHHhcCChHHHH
Q 002664 525 GHKIYKEMVQRGCSPDLMLLNTYMDCVFKAGETEKGRALFEEIKAQGFVPDVQS--------YSILIHGLVKAGFAHETD 596 (895)
Q Consensus 525 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--------~~~l~~~~~~~g~~~~A~ 596 (895)
|.+.++.....+ ..|..+-+.....+.+.|+.++|..++......+..|.... ..-...+|.+.|++..|.
T Consensus 247 Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~AL 325 (517)
T PF12569_consen 247 AAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLAL 325 (517)
T ss_pred HHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 888888887764 44555666666777788888888888887776653222111 122345666777777777
Q ss_pred HHHHHHHH
Q 002664 597 QLFYAMKK 604 (895)
Q Consensus 597 ~~~~~~~~ 604 (895)
+.|..+.+
T Consensus 326 k~~~~v~k 333 (517)
T PF12569_consen 326 KRFHAVLK 333 (517)
T ss_pred HHHHHHHH
Confidence 66665554
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=1e-10 Score=129.86 Aligned_cols=183 Identities=13% Similarity=0.047 Sum_probs=93.6
Q ss_pred hhhHHHHHHHHHHCCCCCC-HHHHHHHHHHHHh---------cCCHhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCC
Q 002664 278 VDMAWKFFHEMKAQGVAPD-DVTYTSMIGVLCK---------SKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGK 347 (895)
Q Consensus 278 ~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 347 (895)
+++|..+|++..+. .|+ ...|..+..++.. .+++++|...++++++.++. +..++..++..+...|+
T Consensus 277 ~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 277 LQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN-NPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHccC
Confidence 45666666666654 232 3344444433321 22355666666666655544 55555555555555666
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 002664 348 FDEAFSLFERLKQKGCIPSVIAYNSLLTCLGKKGRVTEAMKIFEAMKKDARPNNTTYNVLIDMLCKAGNFEDALKFRDAM 427 (895)
Q Consensus 348 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 427 (895)
+++|...|+++.+.++ .+..++..+..++...|++++|+..+++..+..|.+...+..++..+...|++++|...++++
T Consensus 354 ~~~A~~~~~~Al~l~P-~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~ 432 (553)
T PRK12370 354 YIVGSLLFKQANLLSP-ISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDEL 432 (553)
T ss_pred HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHH
Confidence 6666666666555542 234455555555555566666666665555555554444444444444455555555555555
Q ss_pred HHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhhh
Q 002664 428 KEAGLFPNVMTVNIMVDRLCKAQKLDEAFSIFEGMDH 464 (895)
Q Consensus 428 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 464 (895)
.....+.+...+..+...+...|++++|...+.++..
T Consensus 433 l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~ 469 (553)
T PRK12370 433 RSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEIST 469 (553)
T ss_pred HHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh
Confidence 4432111223344444455555555555555555433
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.1e-11 Score=113.99 Aligned_cols=233 Identities=13% Similarity=0.098 Sum_probs=201.2
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHH-HHH
Q 002664 226 SVHLFTTLIRVFAREGRVDDALFLLDEMKNNAFSVDIVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGVAPDDVTYT-SMI 304 (895)
Q Consensus 226 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~-~l~ 304 (895)
+-.--..+.++|.+.|.+.+|...|+..++. .|.+.||..|..+|.+....+.|+.++.+-.+. .|..+||. .+.
T Consensus 222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~A 297 (478)
T KOG1129|consen 222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQA 297 (478)
T ss_pred hHHHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhH
Confidence 3344467889999999999999999998887 566777888999999999999999999998875 56667664 466
Q ss_pred HHHHhcCCHhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 002664 305 GVLCKSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLFERLKQKGCIPSVIAYNSLLTCLGKKGRVT 384 (895)
Q Consensus 305 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 384 (895)
+.+...++.++|.++|+.+++..+. ++.+...+...|.-.++++-|+.++.++.+.|.. +...|+.+.-+|.-.++++
T Consensus 298 Ri~eam~~~~~a~~lYk~vlk~~~~-nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D 375 (478)
T KOG1129|consen 298 RIHEAMEQQEDALQLYKLVLKLHPI-NVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQID 375 (478)
T ss_pred HHHHHHHhHHHHHHHHHHHHhcCCc-cceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchh
Confidence 7888999999999999999998776 8888888999999999999999999999999976 8889999999999999999
Q ss_pred HHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 002664 385 EAMKIFEAMKKDA---RPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEAGLFPNVMTVNIMVDRLCKAQKLDEAFSIFEG 461 (895)
Q Consensus 385 ~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 461 (895)
-++..|++..... ..-..+|..+......-|++.-|.+.|+-.+..+. .+...++.+.-.-.+.|++++|..++..
T Consensus 376 ~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~-~h~ealnNLavL~~r~G~i~~Arsll~~ 454 (478)
T KOG1129|consen 376 LVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDA-QHGEALNNLAVLAARSGDILGARSLLNA 454 (478)
T ss_pred hhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCc-chHHHHHhHHHHHhhcCchHHHHHHHHH
Confidence 9999999887532 33456899999999999999999999999987652 3567888888888999999999999998
Q ss_pred hhhC
Q 002664 462 MDHK 465 (895)
Q Consensus 462 ~~~~ 465 (895)
....
T Consensus 455 A~s~ 458 (478)
T KOG1129|consen 455 AKSV 458 (478)
T ss_pred hhhh
Confidence 7765
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.41 E-value=9e-09 Score=109.74 Aligned_cols=291 Identities=14% Similarity=0.135 Sum_probs=164.6
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcC----
Q 002664 201 ALATVRESNLMLNLFHQMQELGYEVSVHLFTTLIRVFAREGRVDDALFLLDEMKNNAFSVDIVLYNVCIDCFGKVG---- 276 (895)
Q Consensus 201 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---- 276 (895)
.+...|++++|++.+..-... +..........+..+.+.|+.++|..++..+++.+ +.+...|..+..+..-..
T Consensus 13 il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~~~~ 90 (517)
T PF12569_consen 13 ILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQLSD 90 (517)
T ss_pred HHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhccccc
Confidence 344556666666665543332 22233444555666666666666666666666654 233333444444442221
Q ss_pred -ChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-hHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCCHHHHHHH
Q 002664 277 -KVDMAWKFFHEMKAQGVAPDDVTYTSMIGVLCKSKRL-EEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSL 354 (895)
Q Consensus 277 -~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 354 (895)
..+....+++++...- |.......+.-.+..-..+ ..+..++..++..|++ .+++.|-..|.......-..++
T Consensus 91 ~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~l 165 (517)
T PF12569_consen 91 EDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIESL 165 (517)
T ss_pred ccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHHH
Confidence 3445555666655542 3322222222122221222 2333444555555543 2444444445544444444444
Q ss_pred HHHHHhc----C----------CCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 002664 355 FERLKQK----G----------CIPSV--IAYNSLLTCLGKKGRVTEAMKIFEAMKKDARPNNTTYNVLIDMLCKAGNFE 418 (895)
Q Consensus 355 ~~~~~~~----~----------~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 418 (895)
+...... + -+|.. .++..+...|...|++++|+++++......|..+..|..-+.++-+.|+++
T Consensus 166 ~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~ 245 (517)
T PF12569_consen 166 VEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLK 245 (517)
T ss_pred HHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHH
Confidence 4443321 1 12333 345666777778888888888888888877888888888888888888888
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChh------hH--HHHHHHHhhcCCHHHH
Q 002664 419 DALKFRDAMKEAGLFPNVMTVNIMVDRLCKAQKLDEAFSIFEGMDHKTCTPDAV------TF--CSLIDGLGKNGRVDDA 490 (895)
Q Consensus 419 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~------~~--~~l~~~~~~~g~~~~A 490 (895)
+|.+.++.....+. .|...-+..+..+.+.|++++|..++......+..|... .| ...+.+|.+.|++..|
T Consensus 246 ~Aa~~~~~Ar~LD~-~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~A 324 (517)
T PF12569_consen 246 EAAEAMDEARELDL-ADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLA 324 (517)
T ss_pred HHHHHHHHHHhCCh-hhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 88888888877653 355555566677778888888888887776665322211 11 3346677788888888
Q ss_pred HHHHHHHHh
Q 002664 491 YKFYEKMLD 499 (895)
Q Consensus 491 ~~~~~~~~~ 499 (895)
++.|..+.+
T Consensus 325 Lk~~~~v~k 333 (517)
T PF12569_consen 325 LKRFHAVLK 333 (517)
T ss_pred HHHHHHHHH
Confidence 777766654
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.3e-10 Score=113.51 Aligned_cols=197 Identities=16% Similarity=0.161 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 002664 227 VHLFTTLIRVFAREGRVDDALFLLDEMKNNAFSVDIVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGVAPDDVTYTSMIGV 306 (895)
Q Consensus 227 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~ 306 (895)
...+..++..+...|++++|...+++..+.. +.+...+..++..+...|++++|.+.+++..+... .+...+..++..
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP-NNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHH
Confidence 3444555555555555555555555554432 22334444445555555555555555555544321 133344444444
Q ss_pred HHhcCCHhHHHHHHHHHhhCCCCC-CHHhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 002664 307 LCKSKRLEEAVAMFEQMDRNREVP-CAYAYNTMIMGYGSVGKFDEAFSLFERLKQKGCIPSVIAYNSLLTCLGKKGRVTE 385 (895)
Q Consensus 307 ~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 385 (895)
+...|++++|.+.++++......+ ....+..++..+...|++++|...+++..+... .+...+..+...+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDP-QRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CChHHHHHHHHHHHHcCCHHH
Confidence 555555555555555544321111 122333344444444444444444444444321 123334444444444444444
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 002664 386 AMKIFEAMKKDARPNNTTYNVLIDMLCKAGNFEDALKFRDA 426 (895)
Q Consensus 386 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 426 (895)
|...+++.....+.+...+..++..+...|+.++|..+.+.
T Consensus 188 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 228 (234)
T TIGR02521 188 ARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQ 228 (234)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 44444444333333333333344444444444444443333
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.35 E-value=6.7e-10 Score=99.54 Aligned_cols=197 Identities=15% Similarity=0.059 Sum_probs=164.2
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 002664 683 IYSSLIDGFGKVGRIDEAYLIMEELMQKGLTP-NAYTWNCLLDALVKAEEISEAFVCFQSMKDLKCTPNHVTYSIIINGL 761 (895)
Q Consensus 683 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 761 (895)
+...|...|...|++..|.+-++++++. .| +..+|..+...|-+.|+.+.|.+.|++.++.. +.+-...|.....+
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FL 113 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHH
Confidence 4456777899999999999999999984 35 67788889999999999999999999999844 33446778888999
Q ss_pred HhcCCHhHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHH
Q 002664 762 CRVRKFNKAFVFWQEMQKQGFK-PNTITYTTMISGLAKAGNITEANGLFERFKENGGVP-DSACYNAMMEGLSNANRAMD 839 (895)
Q Consensus 762 ~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~ 839 (895)
|..|++++|...|+++.....- -...+|..++.+..+.|+.+.|.+.|++.++ ..| .+.+...++...++.|++-.
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~--~dp~~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE--LDPQFPPALLELARLHYKAGDYAP 191 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH--hCcCCChHHHHHHHHHHhcccchH
Confidence 9999999999999999876222 2357899999999999999999999999998 666 57788899999999999999
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 002664 840 AYTLFEETRRKGFNIHTKTCVILLDALHKAECLEQAAIVGAVLRET 885 (895)
Q Consensus 840 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~l~~~ 885 (895)
|.-+++.....+ +++.......++.-...|+-..|.+....+...
T Consensus 192 Ar~~~~~~~~~~-~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 192 ARLYLERYQQRG-GAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred HHHHHHHHHhcc-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 999999988876 588888888888888899999988866666543
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.32 E-value=6.8e-09 Score=104.89 Aligned_cols=225 Identities=16% Similarity=0.131 Sum_probs=127.9
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC------HHhHHHHHHH
Q 002664 547 YMDCVFKAGETEKGRALFEEIKAQGFVPDVQSYSILIHGLVKAGFAHETDQLFYAMKKQGCVLD------TRAYNTVVDG 620 (895)
Q Consensus 547 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~~l~~~ 620 (895)
+.....+..+++.|.+.+....+.. .+..-++....+|...|.+.+.........+.|...- ...+..+..+
T Consensus 230 lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a 307 (539)
T KOG0548|consen 230 LGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNA 307 (539)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhh
Confidence 3344444455555555555544442 2333344444455555555444444444433321100 1112224446
Q ss_pred HHccCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHH
Q 002664 621 FCKSGKVNKAYQLLEEMKTKGHYPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNTVIYSSLIDGFGKVGRIDEA 700 (895)
Q Consensus 621 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 700 (895)
|.+.++++.|+.+|.+....-..|+. ..+....+++........-.+... ..-...-...+.+.|++..|
T Consensus 308 ~~k~~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~~pe~-A~e~r~kGne~Fk~gdy~~A 377 (539)
T KOG0548|consen 308 YTKREDYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAYINPEK-AEEEREKGNEAFKKGDYPEA 377 (539)
T ss_pred hhhHHhHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhhChhH-HHHHHHHHHHHHhccCHHHH
Confidence 66667788888888876654333222 222333444444444333322111 11122235667778888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 002664 701 YLIMEELMQKGLTPNAYTWNCLLDALVKAEEISEAFVCFQSMKDLKCTPNHVTYSIIINGLCRVRKFNKAFVFWQEMQKQ 780 (895)
Q Consensus 701 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 780 (895)
+..|.++++.. +.|...|.....+|.+.|++..|+.-.+..++.+ ++....|..-+.++....+|++|.+.|++.++.
T Consensus 378 v~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale~ 455 (539)
T KOG0548|consen 378 VKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALEL 455 (539)
T ss_pred HHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 88888888854 3377888888888888888888888888888753 334455666666777778888888888888873
Q ss_pred CCCCCHH
Q 002664 781 GFKPNTI 787 (895)
Q Consensus 781 ~~~p~~~ 787 (895)
.|+..
T Consensus 456 --dp~~~ 460 (539)
T KOG0548|consen 456 --DPSNA 460 (539)
T ss_pred --CchhH
Confidence 45543
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.31 E-value=7.9e-09 Score=95.78 Aligned_cols=292 Identities=12% Similarity=0.088 Sum_probs=166.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHH-HHHHHHHH
Q 002664 160 CIELVVSCVKSKMLREAFDIIQTMRKFKFRPAFTAYTTLIGALATVRESNLMLNLFHQMQELGYEVSVHLF-TTLIRVFA 238 (895)
Q Consensus 160 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~ 238 (895)
+...+-.+++..++.+|++++..-.+.. +.+....+.+..+|-...++..|.++|+++...- |...-| ..-+..+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~--P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLH--PELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--hHHHHHHHHHHHHHH
Confidence 4455555666777777777776665553 2355666677777777777777777777776642 222222 22345556
Q ss_pred hcCChhHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHH
Q 002664 239 REGRVDDALFLLDEMKNNAFSVDIVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGVAPDDVTYTSMIGVLCKSKRLEEAVA 318 (895)
Q Consensus 239 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~ 318 (895)
+.+.+.+|+.+...|.... ..-......-.......+++..+..+.++....| +..+.+.......+.|+++.|.+
T Consensus 90 ~A~i~ADALrV~~~~~D~~-~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvq 165 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDNP-ALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQ 165 (459)
T ss_pred HhcccHHHHHHHHHhcCCH-HHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHH
Confidence 7777777777777665421 0001111111122335566777777776655322 44555566666677777777777
Q ss_pred HHHHHhhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCC-------------CH---------------HHH
Q 002664 319 MFEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLFERLKQKGCIP-------------SV---------------IAY 370 (895)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-------------~~---------------~~~ 370 (895)
-|+...+.+.-....+|+. ..++.+.|+++.|+++..+++++|+.. |+ .++
T Consensus 166 kFqaAlqvsGyqpllAYni-ALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAf 244 (459)
T KOG4340|consen 166 KFQAALQVSGYQPLLAYNL-ALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAF 244 (459)
T ss_pred HHHHHHhhcCCCchhHHHH-HHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHh
Confidence 7777776655434455553 334556677777777777777766431 11 123
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhc--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 002664 371 NSLLTCLGKKGRVTEAMKIFEAMKK--DARPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEAGLFPNVMTVNIMVDRLCK 448 (895)
Q Consensus 371 ~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 448 (895)
|.-...+.+.|+++.|.+.+..|.- ....|+.+...++-.-.. +++.+..+-+.-+++... -...|+..++-.||+
T Consensus 245 NLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~~-~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCK 322 (459)
T KOG4340|consen 245 NLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNMD-ARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCK 322 (459)
T ss_pred hhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhccc-CCccccHHHHHHHHhcCC-CChHHHHHHHHHHhh
Confidence 3333445567777777777766643 234455665555443332 334444444444444332 234566667777777
Q ss_pred cCChhHHHHHHHH
Q 002664 449 AQKLDEAFSIFEG 461 (895)
Q Consensus 449 ~g~~~~A~~~~~~ 461 (895)
..-++.|.+++.+
T Consensus 323 Neyf~lAADvLAE 335 (459)
T KOG4340|consen 323 NEYFDLAADVLAE 335 (459)
T ss_pred hHHHhHHHHHHhh
Confidence 7777777776654
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.31 E-value=7.4e-08 Score=91.36 Aligned_cols=315 Identities=14% Similarity=0.155 Sum_probs=179.1
Q ss_pred ChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhH-HHHH
Q 002664 470 DAVTFCSLIDGLGKNGRVDDAYKFYEKMLDTDQIPNAILYTSLIRNFFKHGRKEDGHKIYKEMVQRGCSPDLMLL-NTYM 548 (895)
Q Consensus 470 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~l~ 548 (895)
++.-...++..+...|++.+|+..|..+++.++ .+-.++..-+..|...|+..-|+.-+...++. +||-... ..-.
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~dp-~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg 113 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGDP-NNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRG 113 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCc-hhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhc
Confidence 344455677777888888888888888887654 35556666677788888888888888877774 6664332 2233
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChH
Q 002664 549 DCVFKAGETEKGRALFEEIKAQGFVPDVQSYSILIHGLVKAGFAHETDQLFYAMKKQGCVLDTRAYNTVVDGFCKSGKVN 628 (895)
Q Consensus 549 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 628 (895)
..+.++|.++.|..-|+.++... |+..+ ..++..-+....+ .......+..+...|+..
T Consensus 114 ~vllK~Gele~A~~DF~~vl~~~--~s~~~-------------~~eaqskl~~~~e------~~~l~~ql~s~~~~GD~~ 172 (504)
T KOG0624|consen 114 VVLLKQGELEQAEADFDQVLQHE--PSNGL-------------VLEAQSKLALIQE------HWVLVQQLKSASGSGDCQ 172 (504)
T ss_pred hhhhhcccHHHHHHHHHHHHhcC--CCcch-------------hHHHHHHHHhHHH------HHHHHHHHHHHhcCCchh
Confidence 46678888888888888887763 32111 1111111100000 011122233344556666
Q ss_pred HHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 002664 629 KAYQLLEEMKTKGHYPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNTVIYSSLIDGFGKVGRIDEAYLIMEELM 708 (895)
Q Consensus 629 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 708 (895)
.|+.+..++++..+- +...+..-..+|...|++..|+.-++.+.+.. ..+...+..+...+...|+.+.++...++.+
T Consensus 173 ~ai~~i~~llEi~~W-da~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECL 250 (504)
T KOG0624|consen 173 NAIEMITHLLEIQPW-DASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECL 250 (504)
T ss_pred hHHHHHHHHHhcCcc-hhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 666666666654221 44455555556666666666666666555543 2233444445555566666666666666666
Q ss_pred HCCCCCCHHH----HHHH---------HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHH---HHHHHHHhcCCHhHHHH
Q 002664 709 QKGLTPNAYT----WNCL---------LDALVKAEEISEAFVCFQSMKDLKCTPNHVTYS---IIINGLCRVRKFNKAFV 772 (895)
Q Consensus 709 ~~~~~p~~~~----~~~l---------~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~---~l~~~~~~~g~~~~A~~ 772 (895)
+ +.||... |..| +......+++.++++..+.+.+.........|+ .+-.++...+++.+|+.
T Consensus 251 K--ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiq 328 (504)
T KOG0624|consen 251 K--LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQ 328 (504)
T ss_pred c--cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHH
Confidence 5 3343221 1111 112234556666666666666633221222222 34455566677777777
Q ss_pred HHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002664 773 FWQEMQKQGFKPN-TITYTTMISGLAKAGNITEANGLFERFKE 814 (895)
Q Consensus 773 ~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 814 (895)
...+.++ +.|| ..++..-..+|.-...++.|+.-|+++.+
T Consensus 329 qC~evL~--~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 329 QCKEVLD--IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALE 369 (504)
T ss_pred HHHHHHh--cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 7777765 4555 55666666667666777777777777766
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.30 E-value=8e-09 Score=104.38 Aligned_cols=237 Identities=14% Similarity=0.084 Sum_probs=141.9
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHH-------HHHH
Q 002664 614 YNTVVDGFCKSGKVNKAYQLLEEMKTKGHYPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNTV-------IYSS 686 (895)
Q Consensus 614 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-------~~~~ 686 (895)
...++++..+..++..|++-+...++.. -+..-++....+|...|.+.++........+.|.. ... .+..
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r 303 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALAR 303 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHH
Confidence 3445555666666666666666666553 23444445555666666666666665555554421 111 1222
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHH-HHHHHHHHHhcC
Q 002664 687 LIDGFGKVGRIDEAYLIMEELMQKGLTPNAYTWNCLLDALVKAEEISEAFVCFQSMKDLKCTPNHVT-YSIIINGLCRVR 765 (895)
Q Consensus 687 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g 765 (895)
+..+|.+.++++.|+..|.+.+...-.|+. ..+....+++....+...- +.|.... --.-++.+.+.|
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~g 372 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKG 372 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhcc
Confidence 344666677788888888877664333222 1222344555555544443 2243311 112356677778
Q ss_pred CHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 002664 766 KFNKAFVFWQEMQKQGFKPNTITYTTMISGLAKAGNITEANGLFERFKENGGVP-DSACYNAMMEGLSNANRAMDAYTLF 844 (895)
Q Consensus 766 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~ 844 (895)
+|.+|+..|.+++... +.|...|.....+|.+.|.+..|++-.+..++ ..| ....|..-+.++....+|++|.+.|
T Consensus 373 dy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ie--L~p~~~kgy~RKg~al~~mk~ydkAleay 449 (539)
T KOG0548|consen 373 DYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIE--LDPNFIKAYLRKGAALRAMKEYDKALEAY 449 (539)
T ss_pred CHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888877753 44566777777788888888888887777777 455 3556666677777777888888888
Q ss_pred HHHHHCCCCCCHhhHHHHHHHHHh
Q 002664 845 EETRRKGFNIHTKTCVILLDALHK 868 (895)
Q Consensus 845 ~~~~~~~~~~~~~~~~~l~~~~~~ 868 (895)
++.++.+ |.+......+.+++..
T Consensus 450 ~eale~d-p~~~e~~~~~~rc~~a 472 (539)
T KOG0548|consen 450 QEALELD-PSNAEAIDGYRRCVEA 472 (539)
T ss_pred HHHHhcC-chhHHHHHHHHHHHHH
Confidence 8877774 5555555555555553
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.3e-09 Score=114.40 Aligned_cols=236 Identities=20% Similarity=0.195 Sum_probs=121.6
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHc-------CCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC-----CC-C
Q 002664 193 TAYTTLIGALATVRESNLMLNLFHQMQEL-------GYEVSVHLFTTLIRVFAREGRVDDALFLLDEMKNN-----AF-S 259 (895)
Q Consensus 193 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~-~ 259 (895)
.+...+...|...|+++.|..++++..+. ..+.-....+.++..|...+++++|..+|++++.. |. .
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34444666666666666666666665543 11111223334566666666666666666666432 11 1
Q ss_pred CC-hHhHHHHHHHHHhcCChhhHHHHHHHHHHC-----CCC-CCHH-HHHHHHHHHHhcCCHhHHHHHHHHHhhC---CC
Q 002664 260 VD-IVLYNVCIDCFGKVGKVDMAWKFFHEMKAQ-----GVA-PDDV-TYTSMIGVLCKSKRLEEAVAMFEQMDRN---RE 328 (895)
Q Consensus 260 ~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----g~~-p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~ 328 (895)
|. ..+++.|...|++.|++++|..++++..+. |.. |... .++.++..++..+++++|..++....+. -+
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 11 234555666666666666666666555432 111 1111 3445555666666666666666654321 11
Q ss_pred CC----CHHhHHHHHHHHHccCCHHHHHHHHHHHHhcC----C---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc--
Q 002664 329 VP----CAYAYNTMIMGYGSVGKFDEAFSLFERLKQKG----C---IPSVIAYNSLLTCLGKKGRVTEAMKIFEAMKK-- 395 (895)
Q Consensus 329 ~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-- 395 (895)
.+ -..+++.|+..|...|++++|.+++++++... . .-....++.|...|.+.+++++|.++|.+...
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 11 13456666666666666666666666655431 0 01123445555556666666655555553321
Q ss_pred -----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002664 396 -----DARPNNTTYNVLIDMLCKAGNFEDALKFRDAMK 428 (895)
Q Consensus 396 -----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 428 (895)
..|....+|..|+..|...|+++.|.++.+.+.
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 122333455555555555555555555554443
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.9e-09 Score=109.17 Aligned_cols=232 Identities=14% Similarity=0.009 Sum_probs=164.6
Q ss_pred cCChHHHHHHHHHHHHCCC-CC--CHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHH
Q 002664 624 SGKVNKAYQLLEEMKTKGH-YP--TVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNTVIYSSLIDGFGKVGRIDEA 700 (895)
Q Consensus 624 ~g~~~~A~~~~~~~~~~~~-~p--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 700 (895)
.+..+.++..+.+++.... .| ....|..+...|...|+.++|...|+++++.. +.+...|+.+...+...|++++|
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 3566778888888875422 22 23457777888899999999999999999875 45788999999999999999999
Q ss_pred HHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 002664 701 YLIMEELMQKGLTP-NAYTWNCLLDALVKAEEISEAFVCFQSMKDLKCTPNHVTYSIIINGLCRVRKFNKAFVFWQEMQK 779 (895)
Q Consensus 701 ~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 779 (895)
...|++.++ +.| +..++..++.++...|++++|++.|++..+.. |+..........+...+++++|++.+.+...
T Consensus 118 ~~~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~ 193 (296)
T PRK11189 118 YEAFDSVLE--LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYE 193 (296)
T ss_pred HHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 999999998 445 57788889999999999999999999999844 5433222222234456789999999977664
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---C--CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 002664 780 QGFKPNTITYTTMISGLAKAGNITEANGLFERFKEN---G--GVP-DSACYNAMMEGLSNANRAMDAYTLFEETRRKGFN 853 (895)
Q Consensus 780 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~--~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 853 (895)
. ..|+. |. ........|+..++ +.++.+.+. . ..| ...+|..++..+.+.|++++|+..|+++++.+ +
T Consensus 194 ~-~~~~~--~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~-~ 267 (296)
T PRK11189 194 K-LDKEQ--WG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN-V 267 (296)
T ss_pred h-CCccc--cH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-C
Confidence 3 23332 22 12233345666554 345555432 0 122 34689999999999999999999999999886 4
Q ss_pred CCHhhHH-HHHHHH
Q 002664 854 IHTKTCV-ILLDAL 866 (895)
Q Consensus 854 ~~~~~~~-~l~~~~ 866 (895)
++...+. .++...
T Consensus 268 ~~~~e~~~~~~e~~ 281 (296)
T PRK11189 268 YNFVEHRYALLELA 281 (296)
T ss_pred chHHHHHHHHHHHH
Confidence 4544433 344333
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.6e-07 Score=87.72 Aligned_cols=329 Identities=12% Similarity=0.084 Sum_probs=175.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHH-HHHH
Q 002664 366 SVIAYNSLLTCLGKKGRVTEAMKIFEAMKKDARPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEAGLFPNVMTVN-IMVD 444 (895)
Q Consensus 366 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~l~~ 444 (895)
++.-...+...+...|++..|+..|.......|.+-.++..-+..|...|+..-|+.-+.+.++. +||...-. .-..
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~ 114 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGV 114 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhch
Confidence 34445556666777777777777777777777777777777777777777777777777777663 45533211 1122
Q ss_pred HHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHhcCCHHH
Q 002664 445 RLCKAQKLDEAFSIFEGMDHKTCTPDAVTFCSLIDGLGKNGRVDDAYKFYEKMLDTDQIPNAILYTSLIRNFFKHGRKED 524 (895)
Q Consensus 445 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 524 (895)
.+.+.|.++.|..-|+.++..... ..+ ...++.+.-..++- ......+..
T Consensus 115 vllK~Gele~A~~DF~~vl~~~~s--~~~---~~eaqskl~~~~e~----------------~~l~~ql~s--------- 164 (504)
T KOG0624|consen 115 VLLKQGELEQAEADFDQVLQHEPS--NGL---VLEAQSKLALIQEH----------------WVLVQQLKS--------- 164 (504)
T ss_pred hhhhcccHHHHHHHHHHHHhcCCC--cch---hHHHHHHHHhHHHH----------------HHHHHHHHH---------
Confidence 344445555555555444443211 000 00001000000000 001111222
Q ss_pred HHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 002664 525 GHKIYKEMVQRGCSPDLMLLNTYMDCVFKAGETEKGRALFEEIKAQGFVPDVQSYSILIHGLVKAGFAHETDQLFYAMKK 604 (895)
Q Consensus 525 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 604 (895)
+...|+...|+.....+++.. +.|...+..-..+|...|.+..|..-++...+
T Consensus 165 --------------------------~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~ask 217 (504)
T KOG0624|consen 165 --------------------------ASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASK 217 (504)
T ss_pred --------------------------HhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 233444444444444444432 23444555555555556666665555555544
Q ss_pred cCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHH
Q 002664 605 QGCVLDTRAYNTVVDGFCKSGKVNKAYQLLEEMKTKGHYPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNTVIY 684 (895)
Q Consensus 605 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 684 (895)
.. ..++..+..+...+...|+.+.++...++.++. .|+....... | +++.+..+.++.|.
T Consensus 218 Ls-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~---Y---KklkKv~K~les~e----------- 277 (504)
T KOG0624|consen 218 LS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPF---Y---KKLKKVVKSLESAE----------- 277 (504)
T ss_pred cc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHH---H---HHHHHHHHHHHHHH-----------
Confidence 32 334555555666666777777777777776664 3444322111 1 11122222222221
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHH---HHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-HHHHHHHHHH
Q 002664 685 SSLIDGFGKVGRIDEAYLIMEELMQKGLTPNAYTWN---CLLDALVKAEEISEAFVCFQSMKDLKCTPN-HVTYSIIING 760 (895)
Q Consensus 685 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~---~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~ 760 (895)
.....+++.++++..+..++.........++ .+-.++...|++.+|++...++++ +.|+ ..++.--..+
T Consensus 278 -----~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~--~d~~dv~~l~dRAeA 350 (504)
T KOG0624|consen 278 -----QAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD--IDPDDVQVLCDRAEA 350 (504)
T ss_pred -----HHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh--cCchHHHHHHHHHHH
Confidence 2234566777777777777743332233333 344556667778888888888877 3344 6677777777
Q ss_pred HHhcCCHhHHHHHHHHHHHC
Q 002664 761 LCRVRKFNKAFVFWQEMQKQ 780 (895)
Q Consensus 761 ~~~~g~~~~A~~~~~~~~~~ 780 (895)
|.....|++|+.-|+.+.+.
T Consensus 351 ~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 351 YLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred HhhhHHHHHHHHHHHHHHhc
Confidence 77777888888888887764
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.9e-09 Score=95.60 Aligned_cols=192 Identities=13% Similarity=0.011 Sum_probs=102.3
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccC
Q 002664 267 VCIDCFGKVGKVDMAWKFFHEMKAQGVAPDDVTYTSMIGVLCKSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVG 346 (895)
Q Consensus 267 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 346 (895)
-+.-.|...|++..|.+-+++.++.... +..+|..+...|.+.|..+.|.+.|++.+...+. +..+.|..+..+|.+|
T Consensus 40 qLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC~qg 117 (250)
T COG3063 40 QLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLCAQG 117 (250)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHHhCC
Confidence 3444555555555555555555554211 3335555555555555555555555555555544 5555555555555555
Q ss_pred CHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 002664 347 KFDEAFSLFERLKQKGCIP-SVIAYNSLLTCLGKKGRVTEAMKIFEAMKKDARPNNTTYNVLIDMLCKAGNFEDALKFRD 425 (895)
Q Consensus 347 ~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 425 (895)
++++|...|++....-..+ -..+|..++-+..+.|+.+.|...|++.....|..+.+...+.....+.|++-.|..+++
T Consensus 118 ~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~ 197 (250)
T COG3063 118 RPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLE 197 (250)
T ss_pred ChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHH
Confidence 5555555555555432111 133555555555555666666666665555555555555556666666666666665555
Q ss_pred HHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 002664 426 AMKEAGLFPNVMTVNIMVDRLCKAQKLDEAFSIFEG 461 (895)
Q Consensus 426 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 461 (895)
.....+. ++.......|+.--..|+.+.+-+.=..
T Consensus 198 ~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~q 232 (250)
T COG3063 198 RYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQ 232 (250)
T ss_pred HHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 5555443 4444444444444445555544444333
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=6.1e-09 Score=105.51 Aligned_cols=221 Identities=15% Similarity=0.025 Sum_probs=121.7
Q ss_pred hcCChhhHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCCHHH
Q 002664 274 KVGKVDMAWKFFHEMKAQG-VAPD--DVTYTSMIGVLCKSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFDE 350 (895)
Q Consensus 274 ~~g~~~~A~~~~~~~~~~g-~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 350 (895)
..+..+.++..+.+++... ..|+ ...|..++..|...|++++|...|++.++..+. +..+|+.++..+...|++++
T Consensus 38 ~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~~ 116 (296)
T PRK11189 38 PTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNFDA 116 (296)
T ss_pred CchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHH
Confidence 3455666777777766532 1222 234666666777777777777777777776654 66677777777777777777
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 002664 351 AFSLFERLKQKGCIPSVIAYNSLLTCLGKKGRVTEAMKIFEAMKKDARPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEA 430 (895)
Q Consensus 351 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 430 (895)
|...|++..+..+. +..++..++.++...|++++|++.|+...+..|.+.. ...........++.++|...+.+....
T Consensus 117 A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~-~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 117 AYEAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPY-RALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 77777777765422 4556666666677777777777777776666555542 111112233455667777766554432
Q ss_pred CCCCChhhHHHHHHHHHhcCChhHHHHHHHHhhhC---CC---CCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCC
Q 002664 431 GLFPNVMTVNIMVDRLCKAQKLDEAFSIFEGMDHK---TC---TPDAVTFCSLIDGLGKNGRVDDAYKFYEKMLDTDQ 502 (895)
Q Consensus 431 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 502 (895)
. .|+. |. ........|+...+ ..++.+.+. .. +....+|..++..+.+.|++++|+..|++++..++
T Consensus 195 ~-~~~~--~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 195 L-DKEQ--WG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred C-Cccc--cH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 1 1221 11 11222234444333 233332211 00 01223455566666666666666666666665543
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.4e-08 Score=92.65 Aligned_cols=290 Identities=16% Similarity=0.133 Sum_probs=134.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHH-HHHHHHhcC
Q 002664 233 LIRVFAREGRVDDALFLLDEMKNNAFSVDIVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGVAPDDVTYTS-MIGVLCKSK 311 (895)
Q Consensus 233 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~-l~~~~~~~g 311 (895)
++..+.+..++.+|++++....+.. +.+....+.+..+|....++..|...++++-.. .|...-|.. -...+.+.+
T Consensus 16 viy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A~ 92 (459)
T KOG4340|consen 16 VVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYKAC 92 (459)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHhc
Confidence 3333444444455554444444332 113333444444444555555555555444432 233332221 123344445
Q ss_pred CHhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 002664 312 RLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLFERLKQKGCIPSVIAYNSLLTCLGKKGRVTEAMKIFE 391 (895)
Q Consensus 312 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 391 (895)
.+..|+.+...|.... ..-..+...-.......+++..+..+.++....| +..+.+.......+.|+++.|.+-|+
T Consensus 93 i~ADALrV~~~~~D~~-~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvqkFq 168 (459)
T KOG4340|consen 93 IYADALRVAFLLLDNP-ALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQKFQ 168 (459)
T ss_pred ccHHHHHHHHHhcCCH-HHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHHHHH
Confidence 5555555544443320 0000111111111223444444444444443222 33333344444445555555555555
Q ss_pred HHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-------------C---------------hhhHHHHH
Q 002664 392 AMKKDARPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEAGLFP-------------N---------------VMTVNIMV 443 (895)
Q Consensus 392 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-------------~---------------~~~~~~l~ 443 (895)
...+-..-++..-..++-+..+.|+++.|++...++.++|+.. | ...+|.-.
T Consensus 169 aAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKa 248 (459)
T KOG4340|consen 169 AALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKA 248 (459)
T ss_pred HHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhh
Confidence 5444333333322333333444455555555555555444221 1 11122233
Q ss_pred HHHHhcCChhHHHHHHHHhhhCC-CCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHhcCCH
Q 002664 444 DRLCKAQKLDEAFSIFEGMDHKT-CTPDAVTFCSLIDGLGKNGRVDDAYKFYEKMLDTDQIPNAILYTSLIRNFFKHGRK 522 (895)
Q Consensus 444 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 522 (895)
..+.+.++++.|.+.+-.|..+. ...|++|...+.-. -..+++.+..+-+..++...| ....++..++-.||++.-+
T Consensus 249 AIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf 326 (459)
T KOG4340|consen 249 AIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYF 326 (459)
T ss_pred hhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHH
Confidence 34556777888887777775442 33456665554322 223455566666666666655 3456777777788888777
Q ss_pred HHHHHHHHH
Q 002664 523 EDGHKIYKE 531 (895)
Q Consensus 523 ~~A~~~~~~ 531 (895)
+.|..++.+
T Consensus 327 ~lAADvLAE 335 (459)
T KOG4340|consen 327 DLAADVLAE 335 (459)
T ss_pred hHHHHHHhh
Confidence 777776654
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.3e-07 Score=100.40 Aligned_cols=202 Identities=8% Similarity=-0.035 Sum_probs=96.3
Q ss_pred CCCHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCC-CCh-hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHH
Q 002664 119 AHSLEAYNSLLMVMAVSKNFEPLEEILGEMSLAGIG-PTN-NTCIELVVSCVKSKMLREAFDIIQTMRKFKFRPAFTAYT 196 (895)
Q Consensus 119 ~~~~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~-~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 196 (895)
|..+.+|..++..+...++.+.+...+......... .+. .........+...|++++|..++++..+.. +.+...+.
T Consensus 3 p~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~ 81 (355)
T cd05804 3 PDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALK 81 (355)
T ss_pred CccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHH
Confidence 445666777777777777777766555554433211 111 112222333445666666666666655442 22222222
Q ss_pred HHHHHHHh----cCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHhHHHHHHHH
Q 002664 197 TLIGALAT----VRESNLMLNLFHQMQELGYEVSVHLFTTLIRVFAREGRVDDALFLLDEMKNNAFSVDIVLYNVCIDCF 272 (895)
Q Consensus 197 ~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 272 (895)
. ...+.. .+....+.+.+... ....+........+...+...|++++|...+++..+.. +.+...+..+..++
T Consensus 82 ~-~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~ 158 (355)
T cd05804 82 L-HLGAFGLGDFSGMRDHVARVLPLW-APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVL 158 (355)
T ss_pred H-hHHHHHhcccccCchhHHHHHhcc-CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHH
Confidence 1 111111 23333333333321 11112222333444455556666666666666665553 33344555556666
Q ss_pred HhcCChhhHHHHHHHHHHCCCC-CCH--HHHHHHHHHHHhcCCHhHHHHHHHHHh
Q 002664 273 GKVGKVDMAWKFFHEMKAQGVA-PDD--VTYTSMIGVLCKSKRLEEAVAMFEQMD 324 (895)
Q Consensus 273 ~~~g~~~~A~~~~~~~~~~g~~-p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~ 324 (895)
...|++++|...+++....... |+. ..|..+...+...|++++|+.++++..
T Consensus 159 ~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 159 EMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHI 213 (355)
T ss_pred HHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 6666666666666655543211 111 123345555556666666666666654
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.1e-05 Score=87.09 Aligned_cols=223 Identities=17% Similarity=0.164 Sum_probs=141.9
Q ss_pred hcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhhHHH
Q 002664 204 TVRESNLMLNLFHQMQELGYEVSVHLFTTLIRVFAREGRVDDALFLLDEMKNNAFSVDIVLYNVCIDCFGKVGKVDMAWK 283 (895)
Q Consensus 204 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 283 (895)
..+++..|....+++... +|....+-..=+-.+.+.|+.++|..+++.....+ ..|..|...+-.+|...|+.++|..
T Consensus 21 d~~qfkkal~~~~kllkk-~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~-~~D~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKK-HPNALYAKVLKALSLFRLGKGDEALKLLEALYGLK-GTDDLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred hhHHHHHHHHHHHHHHHH-CCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCC-CCchHHHHHHHHHHHHHhhhhHHHH
Confidence 456777888777777664 22222222222334568888999988888776654 3378888888888888899999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHcc-CC---------HHHHHH
Q 002664 284 FFHEMKAQGVAPDDVTYTSMIGVLCKSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSV-GK---------FDEAFS 353 (895)
Q Consensus 284 ~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~---------~~~A~~ 353 (895)
+|++.... .|+......+..+|.+.++|.+-.+.--++-+.-+. +.+.+=.++..+... .. ..-|.+
T Consensus 99 ~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk-~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~ 175 (932)
T KOG2053|consen 99 LYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPK-RAYYFWSVISLILQSIFSENELLDPILLALAEK 175 (932)
T ss_pred HHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-ccchHHHHHHHHHHhccCCcccccchhHHHHHH
Confidence 99888775 566777777788888888876544444444333333 333332333332211 11 334666
Q ss_pred HHHHHHhcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHH-HH-hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 002664 354 LFERLKQKG-CIPSVIAYNSLLTCLGKKGRVTEAMKIFE-AM-KKDARPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEA 430 (895)
Q Consensus 354 ~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~-~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 430 (895)
.++.+.+.+ ...+..-.......+...|++++|.+++. .. .+..+.+...-+.-+..+...+++.+-.++..++...
T Consensus 176 m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k 255 (932)
T KOG2053|consen 176 MVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEK 255 (932)
T ss_pred HHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHh
Confidence 677776654 22122222333344557788999999884 33 2344455555667778888889999999998888887
Q ss_pred C
Q 002664 431 G 431 (895)
Q Consensus 431 ~ 431 (895)
|
T Consensus 256 ~ 256 (932)
T KOG2053|consen 256 G 256 (932)
T ss_pred C
Confidence 6
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.9e-10 Score=80.21 Aligned_cols=50 Identities=46% Similarity=0.780 Sum_probs=37.4
Q ss_pred CChHhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 002664 260 VDIVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGVAPDDVTYTSMIGVLCK 309 (895)
Q Consensus 260 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~ 309 (895)
||+.+||.++++|++.|++++|.++|++|.+.|+.||..||+.+++++++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 56777777777777777777777777777777777777777777777664
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.9e-07 Score=96.63 Aligned_cols=93 Identities=13% Similarity=0.103 Sum_probs=51.3
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhcCCC-CCH--HHHHHHHHHH
Q 002664 301 TSMIGVLCKSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLFERLKQKGCI-PSV--IAYNSLLTCL 377 (895)
Q Consensus 301 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~--~~~~~l~~~~ 377 (895)
..+...+...|++++|...+++..+..+. +...+..+..++...|++++|...+++....... |+. ..|..+...+
T Consensus 118 ~~~a~~~~~~G~~~~A~~~~~~al~~~p~-~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~ 196 (355)
T cd05804 118 GMLAFGLEEAGQYDRAEEAARRALELNPD-DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFY 196 (355)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHH
Confidence 34445556666666666666666665543 4555555666666666666666666665553211 111 2334455555
Q ss_pred HhcCCHHHHHHHHHHHh
Q 002664 378 GKKGRVTEAMKIFEAMK 394 (895)
Q Consensus 378 ~~~g~~~~A~~~~~~~~ 394 (895)
...|++++|..+|++..
T Consensus 197 ~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 197 LERGDYEAALAIYDTHI 213 (355)
T ss_pred HHCCCHHHHHHHHHHHh
Confidence 56666666666665553
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.06 E-value=4.6e-05 Score=82.62 Aligned_cols=537 Identities=14% Similarity=0.098 Sum_probs=260.7
Q ss_pred HHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHH--HHHhcCCHhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCCHH
Q 002664 272 FGKVGKVDMAWKFFHEMKAQGVAPDDVTYTSMIG--VLCKSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFD 349 (895)
Q Consensus 272 ~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 349 (895)
....+++..|.+....+.+. .|+.... ..+. .+.+.|+.++|..+++.....++. |..|...+-.+|...|+.+
T Consensus 19 ~ld~~qfkkal~~~~kllkk--~Pn~~~a-~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d 94 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKK--HPNALYA-KVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLD 94 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHH--CCCcHHH-HHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhh
Confidence 34567888888888887775 3454322 2222 356788888888888877766665 7788888888888888888
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC----------HHH
Q 002664 350 EAFSLFERLKQKGCIPSVIAYNSLLTCLGKKGRVTEAMKIFEAMKKDARPNNTTYNVLIDMLCKAGN----------FED 419 (895)
Q Consensus 350 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~ 419 (895)
+|..+|++..... |+......+..+|.+.+.+.+-.+.--++-+..|.++..+-.++....+... ..-
T Consensus 95 ~~~~~Ye~~~~~~--P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~L 172 (932)
T KOG2053|consen 95 EAVHLYERANQKY--PSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLAL 172 (932)
T ss_pred HHHHHHHHHHhhC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHH
Confidence 8888888888763 5666677777778887777665555545555666666666666655554321 122
Q ss_pred HHHHHHHHHHCC-CCCChhhHHHHHHHHHhcCChhHHHHHHHH-hhhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHH
Q 002664 420 ALKFRDAMKEAG-LFPNVMTVNIMVDRLCKAQKLDEAFSIFEG-MDHKTCTPDAVTFCSLIDGLGKNGRVDDAYKFYEKM 497 (895)
Q Consensus 420 A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 497 (895)
|.+.++.+.+.+ -.-+..-.......+...|++++|.+++.. ..+.-...+...-+.-+..+...+++.+-.++-.++
T Consensus 173 A~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~L 252 (932)
T KOG2053|consen 173 AEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRL 252 (932)
T ss_pred HHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 333444444332 111111112222334445666666666522 222212223333344455555566666666666666
Q ss_pred HhCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHH
Q 002664 498 LDTDQIPNAILYTSLIRNFFKHGRKEDGHKIYKEMVQRGCSPDLMLLNTYMDCVFKAGETEKGRALFEEIKAQGFVPDVQ 577 (895)
Q Consensus 498 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 577 (895)
+..+.. | |...+.. +.++++....+....- +...+..+...+...+....... ++.
T Consensus 253 l~k~~D-d---y~~~~~s-------------v~klLe~~~~~~a~~~------~s~~~~l~~~~ek~~~~i~~~~R-gp~ 308 (932)
T KOG2053|consen 253 LEKGND-D---YKIYTDS-------------VFKLLELLNKEPAEAA------HSLSKSLDECIEKAQKNIGSKSR-GPY 308 (932)
T ss_pred HHhCCc-c---hHHHHHH-------------HHHHHHhcccccchhh------hhhhhhHHHHHHHHHHhhccccc-CcH
Confidence 655432 1 2111111 1111111001111000 01111222222222222221101 111
Q ss_pred -HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHH-------hH
Q 002664 578 -SYSILIHGLVKAGFAHETDQLFYAMKKQGCVLDTRAYNTVVDGFCKSGKVNKAYQLLEEMKTKGHYPTVV-------TY 649 (895)
Q Consensus 578 -~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-------~~ 649 (895)
..--+..-+..-|+.+++...|-+-.. +...|..=+..|...=..+.-..++....... ++.. .+
T Consensus 309 LA~lel~kr~~~~gd~ee~~~~y~~kfg-----~kpcc~~Dl~~yl~~l~~~q~~~l~~~l~~~~--~~~s~~~k~l~~h 381 (932)
T KOG2053|consen 309 LARLELDKRYKLIGDSEEMLSYYFKKFG-----DKPCCAIDLNHYLGHLNIDQLKSLMSKLVLAD--DDSSGDEKVLQQH 381 (932)
T ss_pred HHHHHHHHHhcccCChHHHHHHHHHHhC-----CCcHhHhhHHHhhccCCHHHHHHHHHHhhccC--CcchhhHHHHHHH
Confidence 111111112234555554433322111 11111111111221112222222222222110 0100 00
Q ss_pred HHHHHHHHccC-----CHHHHHHHHHHHH---HcC------CCcC---------HHHHHHHHHHHHccCCHH---HHHHH
Q 002664 650 GSVIDGLAKID-----RLDEAYMLFEEAK---SKG------IELN---------TVIYSSLIDGFGKVGRID---EAYLI 703 (895)
Q Consensus 650 ~~l~~~~~~~~-----~~~~A~~~~~~~~---~~~------~~~~---------~~~~~~l~~~~~~~g~~~---~A~~~ 703 (895)
...+....-.| .-+.-..++++.. +.| .-|+ .-+.+.|++.+.+.++.. +|+-+
T Consensus 382 ~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~L 461 (932)
T KOG2053|consen 382 LCVLLLLRLLGLYEKLPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITL 461 (932)
T ss_pred HHHHHHHHHhhccccCChHHHHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 00011111111 1112222222211 112 1222 124467788888887755 45555
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCC
Q 002664 704 MEELMQKGLTPNAYTWNCLLDALVKAEEISEAFVCFQSMKDLKCTPNHVTYSIIINGLCRVRKFNKAFVFWQEMQKQGFK 783 (895)
Q Consensus 704 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 783 (895)
++..+... +.|..+-..|+..|.-.|-+..|.++|..+--..+..|...|- +...+...|++..+...++....- +.
T Consensus 462 LE~glt~s-~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~-~~~~~~t~g~~~~~s~~~~~~lkf-y~ 538 (932)
T KOG2053|consen 462 LENGLTKS-PHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHL-IFRRAETSGRSSFASNTFNEHLKF-YD 538 (932)
T ss_pred HHHHhhcC-CccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHH-HHHHHHhcccchhHHHHHHHHHHH-Hh
Confidence 66555532 2266666778888888899999999998887656666654443 334556678888888888877653 11
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHH---HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002664 784 PNTITYTTMISGLAKAGNITEANGLFE---RFKENGGVPDSACYNAMMEGLSNANRAMDAYTLFEETR 848 (895)
Q Consensus 784 p~~~~~~~l~~~~~~~g~~~~A~~~~~---~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 848 (895)
.+..----+|....+.|.+.+..++.. ++..+-..--..+-+.....++..++.++-...++.|.
T Consensus 539 ~~~kE~~eyI~~AYr~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~~~~~q~~~~~~~~~ 606 (932)
T KOG2053|consen 539 SSLKETPEYIALAYRRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNADRGTQLLKLLESMK 606 (932)
T ss_pred hhhhhhHHHHHHHHHcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHhccc
Confidence 121111223333446777777665432 22211000122334455566777888888888888775
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.1e-08 Score=104.37 Aligned_cols=223 Identities=15% Similarity=0.084 Sum_probs=114.5
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHH
Q 002664 656 LAKIDRLDEAYMLFEEAKSKGIELNTVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTP-NAYTWNCLLDALVKAEEISE 734 (895)
Q Consensus 656 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~ 734 (895)
+.+.|++.+|.-.|+.+++.+ |-+...|..|+......++-..|+..+.+.++ +.| |..+...|+-.|...|.-.+
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~--LdP~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLE--LDPTNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHh--cCCccHHHHHHHHHHHhhhhhHHH
Confidence 344555555555555555543 33444555555555555555555555555555 223 44455555555555555555
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHH---------HHHHhcCCHhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHH
Q 002664 735 AFVCFQSMKDLKCTPNHVTYSIII---------NGLCRVRKFNKAFVFWQEMQKQ-GFKPNTITYTTMISGLAKAGNITE 804 (895)
Q Consensus 735 A~~~~~~~~~~~~~p~~~~~~~l~---------~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~ 804 (895)
|+..+..-+... |.. .|.... ..+.....+....++|-++... +..+|+.++..|+-.|.-.|++++
T Consensus 372 Al~~L~~Wi~~~--p~y-~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 372 ALKMLDKWIRNK--PKY-VHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHHHhC--ccc-hhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 555555544311 110 000000 0001111222333444443332 334556666666666666666666
Q ss_pred HHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002664 805 ANGLFERFKENGGVP-DSACYNAMMEGLSNANRAMDAYTLFEETRRKGFNIHTKTCVILLDALHKAECLEQAAIVGAVLR 883 (895)
Q Consensus 805 A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~l~ 883 (895)
|+..|+.++. ..| |...|+.|+..+....+.++|+..|.++++.. |...++.+.|+-+|...|.+++|.+.+-..+
T Consensus 449 aiDcf~~AL~--v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLq-P~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 449 AVDCFEAALQ--VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQ-PGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHHHHh--cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcC-CCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 6666666666 555 56666666666666666666666666666652 5555666666666666666666665544444
Q ss_pred HHHH
Q 002664 884 ETAK 887 (895)
Q Consensus 884 ~~~~ 887 (895)
.+..
T Consensus 526 ~mq~ 529 (579)
T KOG1125|consen 526 SMQR 529 (579)
T ss_pred Hhhh
Confidence 4433
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.03 E-value=4.5e-05 Score=77.76 Aligned_cols=424 Identities=12% Similarity=0.104 Sum_probs=213.8
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 002664 365 PSVIAYNSLLTCLGKKGRVTEAMKIFEAMKKDARPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEAGLFPNVMTVNIMVD 444 (895)
Q Consensus 365 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 444 (895)
-|...|+.||+-+... .++++++.++++....|..+..|..-|.......+++...++|.+.+..- .+...|...+.
T Consensus 18 ~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW~lYl~ 94 (656)
T KOG1914|consen 18 YDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLWKLYLS 94 (656)
T ss_pred ccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHHHHHHH
Confidence 3677788777766655 78888888888888888888888888888888888888888888877653 34555555554
Q ss_pred HHHh-cCChhHHH----HHHHHhh-hCCCCC-ChhhHHHHHHH---------HhhcCCHHHHHHHHHHHHhCCCCcchh-
Q 002664 445 RLCK-AQKLDEAF----SIFEGMD-HKTCTP-DAVTFCSLIDG---------LGKNGRVDDAYKFYEKMLDTDQIPNAI- 507 (895)
Q Consensus 445 ~~~~-~g~~~~A~----~~~~~~~-~~~~~~-~~~~~~~l~~~---------~~~~g~~~~A~~~~~~~~~~~~~~~~~- 507 (895)
--.+ .|+...+. +.|+-.. +.|+.+ ....|...+.. +..+.+++...++|++++..... +..
T Consensus 95 YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~-nlEk 173 (656)
T KOG1914|consen 95 YVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMH-NLEK 173 (656)
T ss_pred HHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccc-cHHH
Confidence 3322 23333322 2222222 223222 22334444433 23344667777888888764221 111
Q ss_pred hH------HHHHHHH-------HhcCCHHHHHHHHHHHHHc--CCCCCHhhHHHHHHHHHHcCChh--HHHHHHHHHHHC
Q 002664 508 LY------TSLIRNF-------FKHGRKEDGHKIYKEMVQR--GCSPDLMLLNTYMDCVFKAGETE--KGRALFEEIKAQ 570 (895)
Q Consensus 508 ~~------~~l~~~~-------~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~ 570 (895)
.| ..-+... -+...+..|..+++++... |......+ .-..|-.+ ...+++...++.
T Consensus 174 LW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~-------vp~~~T~~e~~qv~~W~n~I~w 246 (656)
T KOG1914|consen 174 LWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPA-------VPPKGTKDEIQQVELWKNWIKW 246 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCC-------CCCCCChHHHHHHHHHHHHHHH
Confidence 11 1111110 0112234444444444321 11111000 00000001 111122211110
Q ss_pred ----CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHH-HHHcCCCCCHHhH-----HHHHHHHHccCC-------hHHHHH
Q 002664 571 ----GFV-PDVQSYSILIHGLVKAGFAHETDQLFYA-MKKQGCVLDTRAY-----NTVVDGFCKSGK-------VNKAYQ 632 (895)
Q Consensus 571 ----~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~~~-----~~l~~~~~~~g~-------~~~A~~ 632 (895)
+.. .+..... ....-.++. +.-.+..|+.... ....+.+...|+ .+++..
T Consensus 247 EksNpL~t~~~~~~~------------~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~ 314 (656)
T KOG1914|consen 247 EKSNPLRTLDGTMLT------------RRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAAS 314 (656)
T ss_pred HhcCCcccccccHHH------------HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHH
Confidence 000 0000000 000001111 1111122221100 001112222233 344555
Q ss_pred HHHHHHHCCCCCCHHhHHHHHHHHHcc---CCHHHHHHHHHHHHHcC-CCcCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 002664 633 LLEEMKTKGHYPTVVTYGSVIDGLAKI---DRLDEAYMLFEEAKSKG-IELNTVIYSSLIDGFGKVGRIDEAYLIMEELM 708 (895)
Q Consensus 633 ~~~~~~~~~~~p~~~~~~~l~~~~~~~---~~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 708 (895)
+++..+..-..-+..+|..+.+--... .+.+....++++.+..- ..|+ .+|-.+++.-.+..-+..|..+|.++.
T Consensus 315 ~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR 393 (656)
T KOG1914|consen 315 IYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAR 393 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHh
Confidence 555544332222333443333221111 12455556666665542 2333 345556666666666888888888888
Q ss_pred HCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC--
Q 002664 709 QKGLTP-NAYTWNCLLDALVKAEEISEAFVCFQSMKDLKCTPNHVTYSIIINGLCRVRKFNKAFVFWQEMQKQGFKPN-- 785 (895)
Q Consensus 709 ~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-- 785 (895)
+.+..+ ++++.++++..|| +++.+-|.++|+--+..- ..+...-...++-+.+.++-..|..+|++....++.|+
T Consensus 394 ~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf-~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks 471 (656)
T KOG1914|consen 394 EDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKF-GDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKS 471 (656)
T ss_pred hccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhc-CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhh
Confidence 866666 6777777777665 577788888888766522 23333344666777777888888888888887655555
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002664 786 TITYTTMISGLAKAGNITEANGLFERFKE 814 (895)
Q Consensus 786 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 814 (895)
..+|..++.-=..-|++..+.++-+++..
T Consensus 472 ~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 472 KEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 35788888777777888888887777654
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.1e-09 Score=76.34 Aligned_cols=49 Identities=39% Similarity=0.739 Sum_probs=26.2
Q ss_pred CCHHHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCCHHhHHHHHHHHH
Q 002664 295 PDDVTYTSMIGVLCKSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYG 343 (895)
Q Consensus 295 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 343 (895)
||..+|++++.+|++.|++++|.++|++|.+.|+.||..||+.++.+++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4555555555555555555555555555555555555555555555544
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.97 E-value=8.8e-08 Score=97.93 Aligned_cols=224 Identities=14% Similarity=0.093 Sum_probs=116.2
Q ss_pred HHHhcCCHhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 002664 306 VLCKSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLFERLKQKGCIPSVIAYNSLLTCLGKKGRVTE 385 (895)
Q Consensus 306 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 385 (895)
-+.+.|++.+|.-.|+..+..+|. +..+|..|+......++-..|+..+.+..+..+. +..+...|.-.|...|.-.+
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHH
Confidence 345566666666666666655554 5566666666666666666666666666655422 44555555555666665556
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHH-------HHHHhcCCHHHHHHHHHHH-HHCCCCCChhhHHHHHHHHHhcCChhHHHH
Q 002664 386 AMKIFEAMKKDARPNNTTYNVLI-------DMLCKAGNFEDALKFRDAM-KEAGLFPNVMTVNIMVDRLCKAQKLDEAFS 457 (895)
Q Consensus 386 A~~~~~~~~~~~~~~~~~~~~l~-------~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 457 (895)
|+..++......|+-...-..-. ..+.....+....++|-++ ...+..+|+.....|.-.|.-.|++++|.+
T Consensus 372 Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 66655544332221110000000 0001111122223333333 233333455555556556666666666666
Q ss_pred HHHHhhhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002664 458 IFEGMDHKTCTPDAVTFCSLIDGLGKNGRVDDAYKFYEKMLDTDQIPNAILYTSLIRNFFKHGRKEDGHKIYKEMV 533 (895)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 533 (895)
.|+.++... +.|...|+.|+..+....+.++|+..|.++++..| .-+.+.+.|+.+|...|.+++|.+.|-..+
T Consensus 452 cf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP-~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 452 CFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQLQP-GYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCC-CeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 666666553 22455666666666666666666666666666543 234455556666666666666666555544
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.7e-06 Score=102.67 Aligned_cols=376 Identities=11% Similarity=-0.029 Sum_probs=217.2
Q ss_pred HHHHHHHHHHccCCcchHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q 002664 124 AYNSLLMVMAVSKNFEPLEEILGEMSLAGIGPT-NNTCIELVVSCVKSKMLREAFDIIQTMRKFKFRPAFTAYTTLIGAL 202 (895)
Q Consensus 124 ~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 202 (895)
.+...+..+...|++.++....... +..+. ..........+...|.+..+..+++.+.......+..........+
T Consensus 343 lh~raa~~~~~~g~~~~Al~~a~~a---~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~ 419 (903)
T PRK04841 343 LHRAAAEAWLAQGFPSEAIHHALAA---GDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLA 419 (903)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHC---CCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHH
Confidence 3444445555566665555443322 10000 0112223334455677777666666542111111222223344455
Q ss_pred HhcCChhHHHHHHHHHHHcCC------Cc--CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCh----HhHHHHHH
Q 002664 203 ATVRESNLMLNLFHQMQELGY------EV--SVHLFTTLIRVFAREGRVDDALFLLDEMKNNAFSVDI----VLYNVCID 270 (895)
Q Consensus 203 ~~~~~~~~a~~~~~~~~~~~~------~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~ 270 (895)
...|+++++...+.++...-- .+ .......+...+...|++++|...+++........+. ...+.+..
T Consensus 420 ~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~ 499 (903)
T PRK04841 420 QSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGE 499 (903)
T ss_pred HHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHH
Confidence 667788888887777654210 11 1122233445566788888888888887653212221 23455666
Q ss_pred HHHhcCChhhHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHhcCCHhHHHHHHHHHhhC----CCC--C-CHHhHHHH
Q 002664 271 CFGKVGKVDMAWKFFHEMKAQ----GVA-PDDVTYTSMIGVLCKSKRLEEAVAMFEQMDRN----REV--P-CAYAYNTM 338 (895)
Q Consensus 271 ~~~~~g~~~~A~~~~~~~~~~----g~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~--~-~~~~~~~l 338 (895)
.+...|++++|...+++.... |.. +...++..+...+...|++++|...+++.... +.. + ....+..+
T Consensus 500 ~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 579 (903)
T PRK04841 500 VHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIR 579 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHH
Confidence 777888888888888777643 111 11234556667778888888888888776542 111 1 23345566
Q ss_pred HHHHHccCCHHHHHHHHHHHHhc----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcC---CCCCHH--HH--HHH
Q 002664 339 IMGYGSVGKFDEAFSLFERLKQK----GCIPSVIAYNSLLTCLGKKGRVTEAMKIFEAMKKD---ARPNNT--TY--NVL 407 (895)
Q Consensus 339 ~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~--~~--~~l 407 (895)
...+...|++++|...+.+.... +.......+..+...+...|++++|...++..... ...... .. ...
T Consensus 580 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~ 659 (903)
T PRK04841 580 AQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVR 659 (903)
T ss_pred HHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHH
Confidence 66777788888888888876543 11112334555677778888888888888776431 111111 11 112
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCh---hhHHHHHHHHHhcCChhHHHHHHHHhhhC----CCCC-ChhhHHHHHH
Q 002664 408 IDMLCKAGNFEDALKFRDAMKEAGLFPNV---MTVNIMVDRLCKAQKLDEAFSIFEGMDHK----TCTP-DAVTFCSLID 479 (895)
Q Consensus 408 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~ 479 (895)
+..+...|+.+.|..++............ ..+..+...+...|+.++|...+++.... +... ...+...++.
T Consensus 660 ~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~ 739 (903)
T PRK04841 660 LIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQ 739 (903)
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 24445578888888887765542111111 11345667778889999998888877543 2222 2346677888
Q ss_pred HHhhcCCHHHHHHHHHHHHhCCC
Q 002664 480 GLGKNGRVDDAYKFYEKMLDTDQ 502 (895)
Q Consensus 480 ~~~~~g~~~~A~~~~~~~~~~~~ 502 (895)
++...|+.++|...+.++++...
T Consensus 740 a~~~~G~~~~A~~~L~~Al~la~ 762 (903)
T PRK04841 740 LYWQQGRKSEAQRVLLEALKLAN 762 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHhC
Confidence 88999999999999999987653
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.95 E-value=7.2e-07 Score=89.96 Aligned_cols=205 Identities=11% Similarity=0.071 Sum_probs=125.4
Q ss_pred hcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCh--hh
Q 002664 204 TVRESNLMLNLFHQMQELGYEVSVHLFTTLIRVFAREG-RVDDALFLLDEMKNNAFSVDIVLYNVCIDCFGKVGKV--DM 280 (895)
Q Consensus 204 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--~~ 280 (895)
..+..++|+.+..++++.+ +-+..+|+....++...| ++++++.+++++.+.+ +.+..+|+-...++.+.|+. ++
T Consensus 49 ~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~~~~ 126 (320)
T PLN02789 49 SDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDAANK 126 (320)
T ss_pred cCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchhhHH
Confidence 3456677777777777753 335556666666666666 4677777777777664 33444565544445555542 56
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHcc---CC----HHHHHH
Q 002664 281 AWKFFHEMKAQGVAPDDVTYTSMIGVLCKSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSV---GK----FDEAFS 353 (895)
Q Consensus 281 A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~----~~~A~~ 353 (895)
+..+++.+++...+ |..+|+....++...|++++|++.++++++.++. +..+|+.....+.+. |. .+++..
T Consensus 127 el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el~ 204 (320)
T PLN02789 127 ELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSELK 204 (320)
T ss_pred HHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHHHH
Confidence 67777777766433 5667777777777777777777777777777665 666676666555443 21 234555
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 002664 354 LFERLKQKGCIPSVIAYNSLLTCLGKK----GRVTEAMKIFEAMKKDARPNNTTYNVLIDMLCK 413 (895)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 413 (895)
+..+++...+ -|..+|+.+...+... +...+|.+.+.+.....+.+..+...|+..|+.
T Consensus 205 y~~~aI~~~P-~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 205 YTIDAILANP-RNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHhCC-CCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHh
Confidence 5555555542 2555666665555552 333456666666555555566666666666654
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.95 E-value=7.1e-05 Score=76.37 Aligned_cols=186 Identities=16% Similarity=0.189 Sum_probs=111.2
Q ss_pred hHHHHHHHHhhhCCCCCChhhHHHHHHHHhhc---CCHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHhcCCHHHHHHHH
Q 002664 453 DEAFSIFEGMDHKTCTPDAVTFCSLIDGLGKN---GRVDDAYKFYEKMLDTDQIPNAILYTSLIRNFFKHGRKEDGHKIY 529 (895)
Q Consensus 453 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 529 (895)
+++..+++.....-...+..+|..+...-... ...+....++++++......-..+|...+....+..-...|..+|
T Consensus 310 ~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF 389 (656)
T KOG1914|consen 310 DEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIF 389 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHH
Confidence 44555555544432222444444443322211 125555566666655433333345666666666666677777777
Q ss_pred HHHHHcCCCC-CHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 002664 530 KEMVQRGCSP-DLMLLNTYMDCVFKAGETEKGRALFEEIKAQGFVPDVQSYSILIHGLVKAGFAHETDQLFYAMKKQGCV 608 (895)
Q Consensus 530 ~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 608 (895)
.++.+.+..+ ...+..+++..+| .++.+-|..+|+--.+. +..++.-....+..+...++-..|..+|++.+..+++
T Consensus 390 ~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~ 467 (656)
T KOG1914|consen 390 KKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLS 467 (656)
T ss_pred HHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCC
Confidence 7777766555 5555566665444 46667777777765544 1223444455666677777777788888877777555
Q ss_pred CC--HHhHHHHHHHHHccCChHHHHHHHHHHHHC
Q 002664 609 LD--TRAYNTVVDGFCKSGKVNKAYQLLEEMKTK 640 (895)
Q Consensus 609 ~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 640 (895)
++ ..+|..++..-..-|+...++++-+++...
T Consensus 468 ~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~a 501 (656)
T KOG1914|consen 468 ADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTA 501 (656)
T ss_pred hhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 44 467888888778888888888887776543
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.5e-06 Score=101.73 Aligned_cols=373 Identities=9% Similarity=-0.005 Sum_probs=218.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcC
Q 002664 197 TLIGALATVRESNLMLNLFHQMQELGYEVSVHLFTTLIRVFAREGRVDDALFLLDEMKNNAFSVDIVLYNVCIDCFGKVG 276 (895)
Q Consensus 197 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 276 (895)
.....+...|++.+|......+... ..-..........+...|+++.+..+++.+.......+..........+...|
T Consensus 346 raa~~~~~~g~~~~Al~~a~~a~d~--~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g 423 (903)
T PRK04841 346 AAAEAWLAQGFPSEAIHHALAAGDA--QLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQH 423 (903)
T ss_pred HHHHHHHHCCCHHHHHHHHHHCCCH--HHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCC
Confidence 3344566667777666544433211 11112233344455667888877777766532111122223334455556778
Q ss_pred ChhhHHHHHHHHHHCCC------CCC--HHHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCCH----HhHHHHHHHHHc
Q 002664 277 KVDMAWKFFHEMKAQGV------APD--DVTYTSMIGVLCKSKRLEEAVAMFEQMDRNREVPCA----YAYNTMIMGYGS 344 (895)
Q Consensus 277 ~~~~A~~~~~~~~~~g~------~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~ 344 (895)
++++|...+....+.-- .+. ......+...+...|++++|...+++........+. .+.+.++..+..
T Consensus 424 ~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~ 503 (903)
T PRK04841 424 RYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHC 503 (903)
T ss_pred CHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHH
Confidence 88888888877654310 111 112233445566788888888888887653222221 345666777788
Q ss_pred cCCHHHHHHHHHHHHhc----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc----CCC----CCHHHHHHHHHHH
Q 002664 345 VGKFDEAFSLFERLKQK----GC-IPSVIAYNSLLTCLGKKGRVTEAMKIFEAMKK----DAR----PNNTTYNVLIDML 411 (895)
Q Consensus 345 ~g~~~~A~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~----~~~~~~~~l~~~~ 411 (895)
.|++++|...+.+.... |. .....++..+...+...|++++|...+++... ... .....+..++..+
T Consensus 504 ~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 583 (903)
T PRK04841 504 KGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLL 583 (903)
T ss_pred cCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHH
Confidence 88888888888877642 11 11133556667778888888888888876543 111 1233455667777
Q ss_pred HhcCCHHHHHHHHHHHHHCC--CCC--ChhhHHHHHHHHHhcCChhHHHHHHHHhhhCC--CCCChh--hH--HHHHHHH
Q 002664 412 CKAGNFEDALKFRDAMKEAG--LFP--NVMTVNIMVDRLCKAQKLDEAFSIFEGMDHKT--CTPDAV--TF--CSLIDGL 481 (895)
Q Consensus 412 ~~~g~~~~A~~~~~~~~~~~--~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~--~~--~~l~~~~ 481 (895)
...|++++|...+++..... ..+ ....+..+...+...|++++|...++.+.... ...... .. ...+..+
T Consensus 584 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 663 (903)
T PRK04841 584 WEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYW 663 (903)
T ss_pred HHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHH
Confidence 77888888888887765421 111 12334445667778888888888877764321 010110 11 1122444
Q ss_pred hhcCCHHHHHHHHHHHHhCCCCcc---hhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-HhhHHHHHHHHHH
Q 002664 482 GKNGRVDDAYKFYEKMLDTDQIPN---AILYTSLIRNFFKHGRKEDGHKIYKEMVQR----GCSPD-LMLLNTYMDCVFK 553 (895)
Q Consensus 482 ~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~ 553 (895)
...|+.+.|..++........... ......+...+...|++++|...+++.... |...+ ..+...+..++..
T Consensus 664 ~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~ 743 (903)
T PRK04841 664 QMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQ 743 (903)
T ss_pred HHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHH
Confidence 557888888888776554221111 111346677788888888888888877653 22222 2345556677888
Q ss_pred cCChhHHHHHHHHHHHCC
Q 002664 554 AGETEKGRALFEEIKAQG 571 (895)
Q Consensus 554 ~~~~~~a~~~~~~~~~~~ 571 (895)
.|+.++|...+.+..+..
T Consensus 744 ~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 744 QGRKSEAQRVLLEALKLA 761 (903)
T ss_pred cCCHHHHHHHHHHHHHHh
Confidence 899999999998887764
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.94 E-value=3.9e-08 Score=97.72 Aligned_cols=63 Identities=22% Similarity=0.235 Sum_probs=24.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHH
Q 002664 366 SVIAYNSLLTCLGKKGRVTEAMKIFEAMKKDARPNNTTYNVLIDMLCKAGNF-EDALKFRDAMK 428 (895)
Q Consensus 366 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~ 428 (895)
++.+.+.++.+....|++++|.+++.+.....|.++.+...++.+....|+. +.+.+++.++.
T Consensus 200 t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~ 263 (290)
T PF04733_consen 200 TPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLK 263 (290)
T ss_dssp SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 3333444444444444444444444444333333444444444444444443 33333444433
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.1e-06 Score=88.55 Aligned_cols=205 Identities=11% Similarity=0.086 Sum_probs=133.9
Q ss_pred hcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCh--hH
Q 002664 169 KSKMLREAFDIIQTMRKFKFRPAFTAYTTLIGALATVR-ESNLMLNLFHQMQELGYEVSVHLFTTLIRVFAREGRV--DD 245 (895)
Q Consensus 169 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--~~ 245 (895)
..++.++|+....++++.. +-+..+|+....++...| .+++++..++++.+.+ +-+..+|+....++.+.|+. ++
T Consensus 49 ~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~~~~ 126 (320)
T PLN02789 49 SDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDAANK 126 (320)
T ss_pred cCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchhhHH
Confidence 3455666666666666553 334456666666666666 4677777777777654 33555666655555566653 56
Q ss_pred HHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CCH----hHHHH
Q 002664 246 ALFLLDEMKNNAFSVDIVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGVAPDDVTYTSMIGVLCKS---KRL----EEAVA 318 (895)
Q Consensus 246 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~---g~~----~~A~~ 318 (895)
++.+++++.+.+ +.+..+|+-...++...|+++++++.++++++.++. |..+|+....++.+. |.+ +++++
T Consensus 127 el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el~ 204 (320)
T PLN02789 127 ELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSELK 204 (320)
T ss_pred HHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHHHH
Confidence 777777777665 456667777777777778888888888888776544 556666666555444 222 46777
Q ss_pred HHHHHhhCCCCCCHHhHHHHHHHHHcc----CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 002664 319 MFEQMDRNREVPCAYAYNTMIMGYGSV----GKFDEAFSLFERLKQKGCIPSVIAYNSLLTCLGK 379 (895)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 379 (895)
+..+++...|. |..+|+.+...+... +...+|.+.+.+..+.++ .+..+...|+..|+.
T Consensus 205 y~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~-~s~~al~~l~d~~~~ 267 (320)
T PLN02789 205 YTIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDS-NHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccC-CcHHHHHHHHHHHHh
Confidence 77777777765 777888777777663 345667777777776542 366677778877775
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.2e-07 Score=94.39 Aligned_cols=250 Identities=13% Similarity=0.102 Sum_probs=126.1
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhh
Q 002664 201 ALATVRESNLMLNLFHQMQELGYEVSVHLFTTLIRVFAREGRVDDALFLLDEMKNNAFSVDIVLYNVCIDCFGKVGKVDM 280 (895)
Q Consensus 201 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 280 (895)
-..-.|+|..++.-.+ ......+........+.+++...|+++.++ .++.+.. .|.......+...+...++-+.
T Consensus 10 n~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~ 84 (290)
T PF04733_consen 10 NQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKES 84 (290)
T ss_dssp HHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHC
T ss_pred HHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHH
Confidence 3445677777775555 333322333445556667777777766543 3333332 4444444444433333334444
Q ss_pred HHHHHHHHHHCCCCCCHHHHH-HHHHHHHhcCCHhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHH
Q 002664 281 AWKFFHEMKAQGVAPDDVTYT-SMIGVLCKSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLFERLK 359 (895)
Q Consensus 281 A~~~~~~~~~~g~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 359 (895)
+..-+++.......++..++. .....+...|++++|++++... .+.......+..|++.++++.|.+.++.|.
T Consensus 85 ~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~ 158 (290)
T PF04733_consen 85 ALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQ 158 (290)
T ss_dssp HHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 544444443332222222222 2233455667777777766543 245566666677777777777777777776
Q ss_pred hcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 002664 360 QKGCIPSVIAYNSLLTCLGK----KGRVTEAMKIFEAMKKDARPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEAGLFPN 435 (895)
Q Consensus 360 ~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 435 (895)
+.+ .| .+...++.++.. .+.+.+|..+|+++....++++.+.+.++.++...|++++|.+++.+..+.+. .+
T Consensus 159 ~~~--eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~-~~ 234 (290)
T PF04733_consen 159 QID--ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDP-ND 234 (290)
T ss_dssp CCS--CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-C-CH
T ss_pred hcC--Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc-CC
Confidence 653 22 233334333332 22466666666666666666666666666666666666666666666654432 23
Q ss_pred hhhHHHHHHHHHhcCCh-hHHHHHHHHhhhC
Q 002664 436 VMTVNIMVDRLCKAQKL-DEAFSIFEGMDHK 465 (895)
Q Consensus 436 ~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~ 465 (895)
..+...++.+....|+. +.+.+.+.++...
T Consensus 235 ~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 235 PDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 34444444444455554 4444555555443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.87 E-value=5.6e-07 Score=94.64 Aligned_cols=213 Identities=15% Similarity=0.062 Sum_probs=105.7
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccC
Q 002664 267 VCIDCFGKVGKVDMAWKFFHEMKAQGVAPDDVTYTSMIGVLCKSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVG 346 (895)
Q Consensus 267 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 346 (895)
.+...+...|-...|..+|++... |.-+|.+|+..|+..+|..+..+-.+. +|+...|-.++.......
T Consensus 403 ~laell~slGitksAl~I~Erlem---------w~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~s 471 (777)
T KOG1128|consen 403 LLAELLLSLGITKSALVIFERLEM---------WDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDPS 471 (777)
T ss_pred HHHHHHHHcchHHHHHHHHHhHHH---------HHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccChH
Confidence 344455555555555555544322 333444555555555555555554441 234445555555444444
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 002664 347 KFDEAFSLFERLKQKGCIPSVIAYNSLLTCLGKKGRVTEAMKIFEAMKKDARPNNTTYNVLIDMLCKAGNFEDALKFRDA 426 (895)
Q Consensus 347 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 426 (895)
-+++|.++.+..... +-..+.....+.++++++.+.|+.-.+..|-...+|..+..+..+.++++.|.+.|..
T Consensus 472 ~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~r 544 (777)
T KOG1128|consen 472 LYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHR 544 (777)
T ss_pred HHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHH
Confidence 455555544433221 2222222233345555555555555555555555555555555555555555555555
Q ss_pred HHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHh
Q 002664 427 MKEAGLFPNVMTVNIMVDRLCKAQKLDEAFSIFEGMDHKTCTPDAVTFCSLIDGLGKNGRVDDAYKFYEKMLD 499 (895)
Q Consensus 427 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 499 (895)
..... +.+...||.+-.+|.+.++-.+|...+.+..+.+ ..+...|...+....+.|.+++|.+.+.++.+
T Consensus 545 cvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 545 CVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 55432 1123445555555555555555555555555544 22334444555555566666666666665543
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.84 E-value=7.4e-07 Score=93.75 Aligned_cols=226 Identities=13% Similarity=0.069 Sum_probs=176.6
Q ss_pred CCCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 002664 643 YPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNTVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNAYTWNCL 722 (895)
Q Consensus 643 ~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 722 (895)
+|-...-..+...+.+.|-...|..+|++. ..|...|.+|+..|+..+|..+..+.++ -+|++..|..|
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erl---------emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~L 463 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERL---------EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLL 463 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhH---------HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHh
Confidence 344445566777888889999999888765 3456677888889999999888888777 35788888888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 002664 723 LDALVKAEEISEAFVCFQSMKDLKCTPNHVTYSIIINGLCRVRKFNKAFVFWQEMQKQGFKPNTITYTTMISGLAKAGNI 802 (895)
Q Consensus 723 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 802 (895)
++......-+++|.++.+..... +-..+.....+.++++++.+.++.-.+.+ +--..+|..++.+..+.+++
T Consensus 464 GDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~ 535 (777)
T KOG1128|consen 464 GDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKE 535 (777)
T ss_pred hhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhh
Confidence 88877777788888888766542 11122222334789999999998877642 23467888888888899999
Q ss_pred HHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 002664 803 TEANGLFERFKENGGVP-DSACYNAMMEGLSNANRAMDAYTLFEETRRKGFNIHTKTCVILLDALHKAECLEQAAIVGAV 881 (895)
Q Consensus 803 ~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 881 (895)
+.|.+.|...+. ..| +...|+++..+|.+.|+..+|...+.++++.+ ..+...|-+-.-+..+.|.|++|.+...+
T Consensus 536 q~av~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~r 612 (777)
T KOG1128|consen 536 QAAVKAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHR 612 (777)
T ss_pred HHHHHHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHH
Confidence 999999999988 777 57889999999999999999999999999887 66677777777788899999999999999
Q ss_pred HHHHHHhhh
Q 002664 882 LRETAKSQH 890 (895)
Q Consensus 882 l~~~~~~~~ 890 (895)
+.+..+.+.
T Consensus 613 ll~~~~~~~ 621 (777)
T KOG1128|consen 613 LLDLRKKYK 621 (777)
T ss_pred HHHhhhhcc
Confidence 888877654
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=0.00016 Score=81.66 Aligned_cols=240 Identities=8% Similarity=0.048 Sum_probs=169.8
Q ss_pred CCCHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHH
Q 002664 119 AHSLEAYNSLLMVMAVSKNFEPLEEILGEMSLAGIGPTNNTCIELVVSCVKSKMLREAFDIIQTMRKFKFRPAFTAYTTL 198 (895)
Q Consensus 119 ~~~~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 198 (895)
|....++..++..+...+++++|.++.++.... .|.....|..++..+.+.+++.++..+ .+
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~-~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~ 89 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKE-HKKSISALYISGILSLSRRPLNDSNLL-----------------NL 89 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCcceehHHHHHHHHHhhcchhhhhhh-----------------hh
Confidence 456677888888888888888888888765554 334445555555566666665555433 22
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCh
Q 002664 199 IGALATVRESNLMLNLFHQMQELGYEVSVHLFTTLIRVFAREGRVDDALFLLDEMKNNAFSVDIVLYNVCIDCFGKVGKV 278 (895)
Q Consensus 199 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 278 (895)
+..+....++.....++..+.+. .-+..++..++.+|-+.|+.++|..+++++++.+ +.|+.+.|.++..|... ++
T Consensus 90 l~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL 165 (906)
T PRK14720 90 IDSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DK 165 (906)
T ss_pred hhhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hH
Confidence 33333444554444455555553 3355688888899999999999999999999887 66788888888888888 89
Q ss_pred hhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHH
Q 002664 279 DMAWKFFHEMKAQGVAPDDVTYTSMIGVLCKSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLFERL 358 (895)
Q Consensus 279 ~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 358 (895)
++|.+++.+.+.. +...+++..+.+++.++....+. +...+..+. +.+
T Consensus 166 ~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~-d~d~f~~i~----------------~ki 213 (906)
T PRK14720 166 EKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSD-DFDFFLRIE----------------RKV 213 (906)
T ss_pred HHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcc-cchHHHHHH----------------HHH
Confidence 9998888877653 66777888899989888887654 433333333 222
Q ss_pred Hhc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 002664 359 KQK-GCIPSVIAYNSLLTCLGKKGRVTEAMKIFEAMKKDARPNNTTYNVLIDMLC 412 (895)
Q Consensus 359 ~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 412 (895)
... |..--+.++..+-..|-..+++++++.+++.+.+..+.|..+...++.+|.
T Consensus 214 ~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 214 LGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 222 222345567777788888899999999999999988999999999998887
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.77 E-value=9.6e-07 Score=87.07 Aligned_cols=185 Identities=15% Similarity=0.006 Sum_probs=124.1
Q ss_pred cCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH--HH
Q 002664 679 LNTVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNA---YTWNCLLDALVKAEEISEAFVCFQSMKDLKCTPNH--VT 753 (895)
Q Consensus 679 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~ 753 (895)
.....+..++..+...|++++|...++++++... .+. .++..++.++...|++++|+..++++++....... .+
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYP-FSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 3556777778888888999999999998887421 122 46677888888899999999999998874321111 24
Q ss_pred HHHHHHHHHhc--------CCHhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 002664 754 YSIIINGLCRV--------RKFNKAFVFWQEMQKQGFKPNT-ITYTTMISGLAKAGNITEANGLFERFKENGGVPDSACY 824 (895)
Q Consensus 754 ~~~l~~~~~~~--------g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 824 (895)
+..+..++... |++++|.+.++++.+. .|+. ..+..+..... .... . ....
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~~~~-------~-------~~~~ 169 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----LRNR-------L-------AGKE 169 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----HHHH-------H-------HHHH
Confidence 55566666554 6788888888888764 3443 23322221110 0000 0 0112
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002664 825 NAMMEGLSNANRAMDAYTLFEETRRKG--FNIHTKTCVILLDALHKAECLEQAAIVGAVLRE 884 (895)
Q Consensus 825 ~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~l~~ 884 (895)
..++..+.+.|++++|+..++++++.. .+.....+..++.++...|++++|....+.+..
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 356777888999999999999988762 133467888999999999999999986666654
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.75 E-value=8.4e-06 Score=74.75 Aligned_cols=174 Identities=14% Similarity=0.090 Sum_probs=120.9
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 002664 683 IYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNAYTWNCLLDALVKAEEISEAFVCFQSMKDLKCTPNHVTYSIIINGLC 762 (895)
Q Consensus 683 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 762 (895)
.|..+.-+....|+.+.|..+++.+... ++-+......-+..+-..|++++|+++|+.+++.+ +.|..++-.-+-..-
T Consensus 54 l~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilk 131 (289)
T KOG3060|consen 54 LYEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILK 131 (289)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHH
Confidence 3444444555667788888888887764 32233333333334556788888888888888755 455566665555666
Q ss_pred hcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcC---CHH
Q 002664 763 RVRKFNKAFVFWQEMQKQGFKPNTITYTTMISGLAKAGNITEANGLFERFKENGGVP-DSACYNAMMEGLSNAN---RAM 838 (895)
Q Consensus 763 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g---~~~ 838 (895)
..|+.-+|++-+.+..+. +..|...|..|...|...|++++|.-.+++++- +.| ++..+..++..++-.| +.+
T Consensus 132 a~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll--~~P~n~l~f~rlae~~Yt~gg~eN~~ 208 (289)
T KOG3060|consen 132 AQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL--IQPFNPLYFQRLAEVLYTQGGAENLE 208 (289)
T ss_pred HcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHH
Confidence 677777888888877775 777888888888888888888888888888876 667 6777778888776655 566
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHH
Q 002664 839 DAYTLFEETRRKGFNIHTKTCVIL 862 (895)
Q Consensus 839 ~A~~~~~~~~~~~~~~~~~~~~~l 862 (895)
-|+++|++.++.. +.+...++.+
T Consensus 209 ~arkyy~~alkl~-~~~~ral~GI 231 (289)
T KOG3060|consen 209 LARKYYERALKLN-PKNLRALFGI 231 (289)
T ss_pred HHHHHHHHHHHhC-hHhHHHHHHH
Confidence 7888888888774 4455555543
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.72 E-value=3.1e-06 Score=78.49 Aligned_cols=156 Identities=10% Similarity=0.090 Sum_probs=81.9
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 002664 685 SSLIDGFGKVGRIDEAYLIMEELMQKGLTPNAYTWNCLLDALVKAEEISEAFVCFQSMKDLKCTPNHVTYSIIINGLCRV 764 (895)
Q Consensus 685 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 764 (895)
..+...+...|+-+.+..+....... .+.|......++......|++..|+..+++..... ++|...|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 33444555555555555555544331 12244444455555555666666666666555522 44555555555556666
Q ss_pred CCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 002664 765 RKFNKAFVFWQEMQKQGFKPNTITYTTMISGLAKAGNITEANGLFERFKENGGVP-DSACYNAMMEGLSNANRAMDAYTL 843 (895)
Q Consensus 765 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~ 843 (895)
|++++|..-|.+..+. ...++...+.+...+.-.|+++.|..++...... .+ |..+-..|+.+....|++++|.++
T Consensus 148 Gr~~~Ar~ay~qAl~L-~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~--~~ad~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 148 GRFDEARRAYRQALEL-APNEPSIANNLGMSLLLRGDLEDAETLLLPAYLS--PAADSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred cChhHHHHHHHHHHHh-ccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC--CCCchHHHHHHHHHHhhcCChHHHHhh
Confidence 6666666555555553 1223445555555555556666666655555542 22 455555555555555666655554
Q ss_pred HH
Q 002664 844 FE 845 (895)
Q Consensus 844 ~~ 845 (895)
..
T Consensus 225 ~~ 226 (257)
T COG5010 225 AV 226 (257)
T ss_pred cc
Confidence 43
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.3e-06 Score=80.35 Aligned_cols=149 Identities=11% Similarity=0.107 Sum_probs=109.7
Q ss_pred HHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCCH
Q 002664 269 IDCFGKVGKVDMAWKFFHEMKAQGVAPDDVTYTSMIGVLCKSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKF 348 (895)
Q Consensus 269 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 348 (895)
+..|...|+++.+....+.+.. |. . .+...++.++++..+++.+..++. +...|..++..|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~-~-------~~~~~~~~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL-H-------QFASQQTPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc-c-------cccCchhHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCH
Confidence 4456677777765444322211 11 0 122366777888888888887776 788888888888888888
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHH-HhcCC--HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 002664 349 DEAFSLFERLKQKGCIPSVIAYNSLLTCL-GKKGR--VTEAMKIFEAMKKDARPNNTTYNVLIDMLCKAGNFEDALKFRD 425 (895)
Q Consensus 349 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 425 (895)
++|...|++..+..+. +...+..+..++ ...|+ .++|.+++++..+..|.+..++..++..+.+.|++++|...++
T Consensus 90 ~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 90 DNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 8888888888887633 677777777764 56666 4888888888888888888888888888888888888888888
Q ss_pred HHHHCC
Q 002664 426 AMKEAG 431 (895)
Q Consensus 426 ~~~~~~ 431 (895)
++.+..
T Consensus 169 ~aL~l~ 174 (198)
T PRK10370 169 KVLDLN 174 (198)
T ss_pred HHHhhC
Confidence 888764
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.9e-06 Score=84.96 Aligned_cols=185 Identities=12% Similarity=-0.006 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-C-ChHhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCH--HHHHH
Q 002664 227 VHLFTTLIRVFAREGRVDDALFLLDEMKNNAFS-V-DIVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGVAPDD--VTYTS 302 (895)
Q Consensus 227 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~--~~~~~ 302 (895)
...+..++..+...|++++|...|+++....+. + ....+..++.++.+.|++++|...++++.+....... .++..
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 112 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYL 112 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHH
Confidence 334444444455555555555555554443211 0 0123344445555555555555555555543211011 12333
Q ss_pred HHHHHHhc--------CCHhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 002664 303 MIGVLCKS--------KRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLFERLKQKGCIPSVIAYNSLL 374 (895)
Q Consensus 303 l~~~~~~~--------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 374 (895)
+..++... |++++|.+.|+++....+. +...+..+..... ... .. ......+.
T Consensus 113 ~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~----~~~-------~~-------~~~~~~~a 173 (235)
T TIGR03302 113 RGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDY----LRN-------RL-------AGKELYVA 173 (235)
T ss_pred HHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHH----HHH-------HH-------HHHHHHHH
Confidence 33333332 5666667777666665443 2222222111100 000 00 00112455
Q ss_pred HHHHhcCCHHHHHHHHHHHhcCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 002664 375 TCLGKKGRVTEAMKIFEAMKKDAR---PNNTTYNVLIDMLCKAGNFEDALKFRDAMKEA 430 (895)
Q Consensus 375 ~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 430 (895)
..+.+.|++++|+..++......| ....++..++.++...|++++|...++.+...
T Consensus 174 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 174 RFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 566777777777777777765433 34467777777777777777777777776653
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.70 E-value=3.5e-06 Score=78.12 Aligned_cols=157 Identities=15% Similarity=0.113 Sum_probs=91.1
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccC
Q 002664 267 VCIDCFGKVGKVDMAWKFFHEMKAQGVAPDDVTYTSMIGVLCKSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVG 346 (895)
Q Consensus 267 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 346 (895)
.+...+...|+-+.+..+........ .-|......++....+.|++..|+..|.+.....+. |..+|+.++.+|.+.|
T Consensus 71 ~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~-d~~~~~~lgaaldq~G 148 (257)
T COG5010 71 KLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPT-DWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCC-ChhhhhHHHHHHHHcc
Confidence 34445555555555555555543321 223334444666666666666666666666665543 6666666666666666
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 002664 347 KFDEAFSLFERLKQKGCIPSVIAYNSLLTCLGKKGRVTEAMKIFEAMKKDARPNNTTYNVLIDMLCKAGNFEDALKFRDA 426 (895)
Q Consensus 347 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 426 (895)
++++|..-|.+..+.-. -+...++.+.-.+.-.|+.+.|..++.......+.+..+-..+..+....|++++|.++...
T Consensus 149 r~~~Ar~ay~qAl~L~~-~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 149 RFDEARRAYRQALELAP-NEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred ChhHHHHHHHHHHHhcc-CCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence 66666666666665432 24455566666666666666666666666555555666666666666666666666665443
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.67 E-value=9.1e-06 Score=91.64 Aligned_cols=234 Identities=13% Similarity=0.085 Sum_probs=178.2
Q ss_pred HHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCC---ChHhHHHHHHHHHhcCChhhHHHHHHHHHH
Q 002664 215 FHQMQELGYEVSVHLFTTLIRVFAREGRVDDALFLLDEMKNN-AFSV---DIVLYNVCIDCFGKVGKVDMAWKFFHEMKA 290 (895)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 290 (895)
|++.... .|.+...|...+.-....++.+.|++++++++.. ++.. -...|.++++....-|.-+...++|+++.+
T Consensus 1447 ferlvrs-sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcq 1525 (1710)
T KOG1070|consen 1447 FERLVRS-SPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQ 1525 (1710)
T ss_pred HHHHHhc-CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHH
Confidence 4444433 2556678888888889999999999999998753 2222 234566677777777888888999999887
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhcCCC-CCHHH
Q 002664 291 QGVAPDDVTYTSMIGVLCKSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLFERLKQKGCI-PSVIA 369 (895)
Q Consensus 291 ~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~ 369 (895)
. .-....|..|...|.+.+.+++|.++|+.|.+.-- .....|...+..+.++++-+.|..++.++.+.-+. .....
T Consensus 1526 y--cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~-q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~ 1602 (1710)
T KOG1070|consen 1526 Y--CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG-QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEF 1602 (1710)
T ss_pred h--cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc-chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHH
Confidence 5 21234688899999999999999999999988644 47788999999999999999999999998875322 12445
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh--hhHHHHHHHHH
Q 002664 370 YNSLLTCLGKKGRVTEAMKIFEAMKKDARPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEAGLFPNV--MTVNIMVDRLC 447 (895)
Q Consensus 370 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~ 447 (895)
..-.+..-.+.|+.+.++.+|+......|.-...|+..++.-.++|+.+.+..+|+++...++.|-. ..|...+..--
T Consensus 1603 IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk 1682 (1710)
T KOG1070|consen 1603 ISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEK 1682 (1710)
T ss_pred HHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHH
Confidence 5566677778999999999999999999999999999999999999999999999999988776543 23444443333
Q ss_pred hcCCh
Q 002664 448 KAQKL 452 (895)
Q Consensus 448 ~~g~~ 452 (895)
..|+-
T Consensus 1683 ~~Gde 1687 (1710)
T KOG1070|consen 1683 SHGDE 1687 (1710)
T ss_pred hcCch
Confidence 33443
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=6e-06 Score=92.12 Aligned_cols=133 Identities=12% Similarity=0.142 Sum_probs=105.3
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC-HHHH
Q 002664 712 LTPNAYTWNCLLDALVKAEEISEAFVCFQSMKDLKCTPNH-VTYSIIINGLCRVRKFNKAFVFWQEMQKQGFKPN-TITY 789 (895)
Q Consensus 712 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~ 789 (895)
+..++..+..|+.+....|.+++|..+++.+.+ ..|+. .....++.++.+.+++++|+..+++..+. .|+ ...+
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~ 157 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREI 157 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHH
Confidence 444678888888888888888888888888888 44655 45557778888888888888888888874 444 5667
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 002664 790 TTMISGLAKAGNITEANGLFERFKENGGVP-DSACYNAMMEGLSNANRAMDAYTLFEETRRK 850 (895)
Q Consensus 790 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 850 (895)
..+..++.+.|++++|..+|++++. ..| +..++..++..+...|+.++|...|+++++.
T Consensus 158 ~~~a~~l~~~g~~~~A~~~y~~~~~--~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 158 LLEAKSWDEIGQSEQADACFERLSR--QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 7777788888888888888888887 444 4788888888888888888888888888776
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.8e-06 Score=76.51 Aligned_cols=106 Identities=10% Similarity=-0.002 Sum_probs=59.1
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 002664 300 YTSMIGVLCKSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLFERLKQKGCIPSVIAYNSLLTCLGK 379 (895)
Q Consensus 300 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 379 (895)
+..++..+...|++++|...|+..+...+. +..+|..++.++...|++++|...|+++...++ .+..++..++.++.+
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p-~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPW-SWRAHIALAGTWMMLKEYTTAINFYGHALMLDA-SHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHHH
Confidence 334455555566666666666665555543 555555555555566666666666666555432 245555555555555
Q ss_pred cCCHHHHHHHHHHHhcCCCCCHHHHHHH
Q 002664 380 KGRVTEAMKIFEAMKKDARPNNTTYNVL 407 (895)
Q Consensus 380 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l 407 (895)
.|++++|+..|+...+..|.+...+...
T Consensus 105 ~g~~~eAi~~~~~Al~~~p~~~~~~~~~ 132 (144)
T PRK15359 105 MGEPGLAREAFQTAIKMSYADASWSEIR 132 (144)
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 5566666555555555555555554443
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.3e-06 Score=77.45 Aligned_cols=104 Identities=7% Similarity=-0.127 Sum_probs=60.5
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhc
Q 002664 756 IIINGLCRVRKFNKAFVFWQEMQKQGFKPNTITYTTMISGLAKAGNITEANGLFERFKENGGVP-DSACYNAMMEGLSNA 834 (895)
Q Consensus 756 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~ 834 (895)
.+...+...|++++|...|+.+.... +.+..+|..++.++...|++++|...|+++++ ..| ++..+..++.++...
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~--l~p~~~~a~~~lg~~l~~~ 105 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALM--LDASHPEPVYQTGVCLKMM 105 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCCCCcHHHHHHHHHHHHc
Confidence 44555566666666666666665531 22455666666666666666666666666665 444 556666666666666
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHhhHHHHH
Q 002664 835 NRAMDAYTLFEETRRKGFNIHTKTCVILL 863 (895)
Q Consensus 835 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 863 (895)
|++++|+..|+++++.. |.+...+...+
T Consensus 106 g~~~eAi~~~~~Al~~~-p~~~~~~~~~~ 133 (144)
T PRK15359 106 GEPGLAREAFQTAIKMS-YADASWSEIRQ 133 (144)
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHH
Confidence 66666666666666553 44444443333
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.2e-05 Score=89.67 Aligned_cols=146 Identities=13% Similarity=0.150 Sum_probs=105.8
Q ss_pred CCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCCHHhHH
Q 002664 258 FSVDIVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGVAPDD-VTYTSMIGVLCKSKRLEEAVAMFEQMDRNREVPCAYAYN 336 (895)
Q Consensus 258 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 336 (895)
+..++..+-.|+....+.|++++|+.+++...+. .|+. .....++.++.+.+++++|+..+++.+...+. +.....
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~ 158 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREIL 158 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHH
Confidence 3556777777777888888888888888887775 4443 35666777777888888888888888877765 777777
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHH
Q 002664 337 TMIMGYGSVGKFDEAFSLFERLKQKGCIPSVIAYNSLLTCLGKKGRVTEAMKIFEAMKKDARPNNTTYNVL 407 (895)
Q Consensus 337 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 407 (895)
.+..++.+.|++++|..+|+++...+. -+..++..+...+...|+.++|...|+...+...+....|+.+
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~p-~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~ 228 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQHP-EFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRR 228 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHH
Confidence 777788888888888888888877432 2466777777777788888888888877766555555554443
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=6.4e-06 Score=77.35 Aligned_cols=124 Identities=9% Similarity=0.058 Sum_probs=64.8
Q ss_pred cCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCCHHhHHHHHHHH-HccCC--HHHH
Q 002664 275 VGKVDMAWKFFHEMKAQGVAPDDVTYTSMIGVLCKSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGY-GSVGK--FDEA 351 (895)
Q Consensus 275 ~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~A 351 (895)
.++.+++...++...+.+ +.|...|..++..|...|++++|+..|++.....+. +...+..++.++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHH
Confidence 344445555555544442 224445555555555555555555555555555544 555555555542 34444 3555
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCH
Q 002664 352 FSLFERLKQKGCIPSVIAYNSLLTCLGKKGRVTEAMKIFEAMKKDARPNN 401 (895)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 401 (895)
.+++++..+.++. +..++..++..+.+.|++++|+..|+++.+..|++.
T Consensus 130 ~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~ 178 (198)
T PRK10370 130 REMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRV 178 (198)
T ss_pred HHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 5555555555422 445555555555555666666666555555444443
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.60 E-value=3.1e-05 Score=87.54 Aligned_cols=206 Identities=14% Similarity=0.107 Sum_probs=118.5
Q ss_pred CCCHHhHHHHHHHHHccCChHHHHHHHHHHHHC-CCCC---CHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHH
Q 002664 608 VLDTRAYNTVVDGFCKSGKVNKAYQLLEEMKTK-GHYP---TVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNTVI 683 (895)
Q Consensus 608 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 683 (895)
+.++..|-..+..+.+.++.++|.++.++++.. ++.- -...|.++++....-|.-+...++|+++.+.. .....
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHH
Confidence 334556666666666777777777777766543 1111 11245555555555555566666666666542 12345
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH---HHHHHHHHH
Q 002664 684 YSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNAYTWNCLLDALVKAEEISEAFVCFQSMKDLKCTPNH---VTYSIIING 760 (895)
Q Consensus 684 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~l~~~ 760 (895)
|..|...|.+.+.+++|.++++.|.++ +......|..++..+.++.+-+.|..+++++++. -|.. ......+..
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqL 1609 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQL 1609 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHH
Confidence 566666666666666666666666663 2345556666666666666666666666666652 2332 222233444
Q ss_pred HHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 002664 761 LCRVRKFNKAFVFWQEMQKQGFKPNTITYTTMISGLAKAGNITEANGLFERFKENGGVP 819 (895)
Q Consensus 761 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 819 (895)
-.+.|+.+.+..+|+..+.. .+-....|+.++..-.++|+.+.++.+|++++..++.|
T Consensus 1610 EFk~GDaeRGRtlfEgll~a-yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1610 EFKYGDAERGRTLFEGLLSA-YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred HhhcCCchhhHHHHHHHHhh-CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 45566666666666666543 23334566666666666666666666666666655554
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=2e-05 Score=88.67 Aligned_cols=219 Identities=15% Similarity=0.124 Sum_probs=142.2
Q ss_pred ChHhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCCHHhHHHHH
Q 002664 261 DIVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGVAPDDV-TYTSMIGVLCKSKRLEEAVAMFEQMDRNREVPCAYAYNTMI 339 (895)
Q Consensus 261 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 339 (895)
+...+..|+..+...+++++|.++.++..+. .|+.. .|..++..+.+.++++.+.-+ . ++
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv--~---------------~l 90 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL--N---------------LI 90 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh--h---------------hh
Confidence 4667888999998999999999999987775 44443 455555577777776655544 2 23
Q ss_pred HHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 002664 340 MGYGSVGKFDEAFSLFERLKQKGCIPSVIAYNSLLTCLGKKGRVTEAMKIFEAMKKDARPNNTTYNVLIDMLCKAGNFED 419 (895)
Q Consensus 340 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 419 (895)
.......++.-...+...+...+ .+..++..++.+|-+.|+.++|..+|+++.+..|.|+.+.+.++..|... ++++
T Consensus 91 ~~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~K 167 (906)
T PRK14720 91 DSFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEK 167 (906)
T ss_pred hhcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHH
Confidence 33333344434444444455432 35568888888888999999999999988888888888999998888888 8888
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhhhCC-------------------CCCChhhHHHHHHH
Q 002664 420 ALKFRDAMKEAGLFPNVMTVNIMVDRLCKAQKLDEAFSIFEGMDHKT-------------------CTPDAVTFCSLIDG 480 (895)
Q Consensus 420 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------------------~~~~~~~~~~l~~~ 480 (895)
|.+++.+.+.. +...+++.++.+++.++.... ..--..++..+-..
T Consensus 168 A~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~ 232 (906)
T PRK14720 168 AITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEP 232 (906)
T ss_pred HHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHH
Confidence 88888877653 333344555555555444431 11122333444455
Q ss_pred HhhcCCHHHHHHHHHHHHhCCCCcchhhHHHHHHHHH
Q 002664 481 LGKNGRVDDAYKFYEKMLDTDQIPNAILYTSLIRNFF 517 (895)
Q Consensus 481 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 517 (895)
|-..++++++..+++.+++..+. |..+...++.+|.
T Consensus 233 y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 233 YKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred HhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 55556666666666666666543 5555555555554
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.57 E-value=7.7e-05 Score=75.67 Aligned_cols=186 Identities=15% Similarity=0.142 Sum_probs=120.1
Q ss_pred cCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHhHHHHH
Q 002664 190 PAFTAYTTLIGALATVRESNLMLNLFHQMQELGYEVSVHLFTTLIRVFAREGRVDDALFLLDEMKNNAFSVDIVLYNVCI 269 (895)
Q Consensus 190 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 269 (895)
|+.......+.+......-..+...+.+..+ +.........+..+...|++++|+..++.+.... +.|.+.+....
T Consensus 272 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~---~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~ 347 (484)
T COG4783 272 PDFQLARARIRAKYEALPNQQAADLLAKRSK---RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAG 347 (484)
T ss_pred ccHHHHHHHHHHHhccccccchHHHHHHHhC---ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 4444455555444333333333333322222 2334555666666677888888888888877653 44566666677
Q ss_pred HHHHhcCChhhHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCCH
Q 002664 270 DCFGKVGKVDMAWKFFHEMKAQGVAPD-DVTYTSMIGVLCKSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKF 348 (895)
Q Consensus 270 ~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 348 (895)
..+.+.|+.++|.+.++.+... .|+ ......+..+|.+.|++.+|+.+++......+. |...|..|..+|...|+.
T Consensus 348 ~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~-dp~~w~~LAqay~~~g~~ 424 (484)
T COG4783 348 DILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPE-DPNGWDLLAQAYAELGNR 424 (484)
T ss_pred HHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC-CchHHHHHHHHHHHhCch
Confidence 7788888888888888888875 444 556667777888888888888888888877766 778888888888888877
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC
Q 002664 349 DEAFSLFERLKQKGCIPSVIAYNSLLTCLGKKGRVTEAMKIFEAMKKDARPN 400 (895)
Q Consensus 349 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 400 (895)
.++.....+ .|.-.|+++.|+..+....+....+
T Consensus 425 ~~a~~A~AE------------------~~~~~G~~~~A~~~l~~A~~~~~~~ 458 (484)
T COG4783 425 AEALLARAE------------------GYALAGRLEQAIIFLMRASQQVKLG 458 (484)
T ss_pred HHHHHHHHH------------------HHHhCCCHHHHHHHHHHHHHhccCC
Confidence 666554443 3444566777776666665544333
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.56 E-value=3.5e-05 Score=71.40 Aligned_cols=250 Identities=12% Similarity=0.076 Sum_probs=158.5
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCCHH
Q 002664 584 HGLVKAGFAHETDQLFYAMKKQGCVLDTRAYNTVVDGFCKSGKVNKAYQLLEEMKTKGHYPTVVTYGSVIDGLAKIDRLD 663 (895)
Q Consensus 584 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 663 (895)
.-+.-.|.+..+...-...... +.+...-..+.++|...|.+...+.-. .. +-.|....+..+...+...++.+
T Consensus 16 Rn~fY~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~~~~eI---~~-~~~~~lqAvr~~a~~~~~e~~~~ 89 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQIVISEI---KE-GKATPLQAVRLLAEYLELESNKK 89 (299)
T ss_pred HHHHHhhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHccccccccccc---cc-ccCChHHHHHHHHHHhhCcchhH
Confidence 3344457777766554444332 134444445667777777765443322 22 22455555555555555555544
Q ss_pred HHH-HHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 002664 664 EAY-MLFEEAKSKGIELNTVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNAYTWNCLLDALVKAEEISEAFVCFQSM 742 (895)
Q Consensus 664 ~A~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 742 (895)
+-. ++.+.+.......+......-+..|+..|++++|.+...... +......=+..+.+..+.+-|...+++|
T Consensus 90 ~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~m 163 (299)
T KOG3081|consen 90 SILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKM 163 (299)
T ss_pred HHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 433 334444444333343444444556888899999988877621 2223333345567778888999999999
Q ss_pred HhcCCCCCHHHHHHHHHHHH----hcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 002664 743 KDLKCTPNHVTYSIIINGLC----RVRKFNKAFVFWQEMQKQGFKPNTITYTTMISGLAKAGNITEANGLFERFKENGGV 818 (895)
Q Consensus 743 ~~~~~~p~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 818 (895)
.+- .+..|.+.|..++. ..+++.+|.-+|++|-++ ..|++.+.+....++...|++++|..+++.++.+ ..
T Consensus 164 q~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k-d~ 238 (299)
T KOG3081|consen 164 QQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK-DA 238 (299)
T ss_pred Hcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc-cC
Confidence 872 34456665655543 345788999999999875 7888889999988899999999999999999885 23
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHC
Q 002664 819 PDSACYNAMMEGLSNANRAMDAY-TLFEETRRK 850 (895)
Q Consensus 819 p~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~ 850 (895)
.++.+...++-.-...|+..++. +.+.++...
T Consensus 239 ~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 239 KDPETLANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred CCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 37888888888777788776655 445555444
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.55 E-value=7.3e-05 Score=69.35 Aligned_cols=152 Identities=14% Similarity=0.103 Sum_probs=93.6
Q ss_pred HHHHHHhcCCHhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh---
Q 002664 303 MIGVLCKSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLFERLKQKGCIPSVIAYNSLLTCLGK--- 379 (895)
Q Consensus 303 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~--- 379 (895)
-+..|+..|++++|++..+... +..+...-+..+.+..+++.|.+.+++|.+.. +..+.+-|..++.+
T Consensus 114 aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~ 184 (299)
T KOG3081|consen 114 AAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLAT 184 (299)
T ss_pred hhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhc
Confidence 3345677777777777776621 33344444455667777777777777777652 55566666666553
Q ss_pred -cCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHH-HH
Q 002664 380 -KGRVTEAMKIFEAMKKDARPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEAGLFPNVMTVNIMVDRLCKAQKLDEA-FS 457 (895)
Q Consensus 380 -~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~ 457 (895)
.+.+..|.-+|+++....+|++.+.+.++.++...|++++|..++++.+.... .++.+...++-.-...|...++ .+
T Consensus 185 ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~-~dpetL~Nliv~a~~~Gkd~~~~~r 263 (299)
T KOG3081|consen 185 GGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA-KDPETLANLIVLALHLGKDAEVTER 263 (299)
T ss_pred cchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC-CCHHHHHHHHHHHHHhCCChHHHHH
Confidence 34567777777777777777777777777777777777777777777776542 2444544444444444444333 33
Q ss_pred HHHHhhh
Q 002664 458 IFEGMDH 464 (895)
Q Consensus 458 ~~~~~~~ 464 (895)
.+.+...
T Consensus 264 ~l~QLk~ 270 (299)
T KOG3081|consen 264 NLSQLKL 270 (299)
T ss_pred HHHHHHh
Confidence 3344433
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.53 E-value=6.9e-05 Score=68.95 Aligned_cols=188 Identities=13% Similarity=0.135 Sum_probs=109.1
Q ss_pred CChHHHHHHHHHHHh---CC-CCcCH-HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhH
Q 002664 171 KMLREAFDIIQTMRK---FK-FRPAF-TAYTTLIGALATVRESNLMLNLFHQMQELGYEVSVHLFTTLIRVFAREGRVDD 245 (895)
Q Consensus 171 ~~~~~A~~~~~~~~~---~~-~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 245 (895)
.+.++.++++..+.. .+ ..++. ..|..+.-+....|+.+.|..+++++... +|-+..+-..-+-.+-..|.+++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhchhh
Confidence 344555555555432 12 33333 23344445555667777777777776654 34344443333444455677777
Q ss_pred HHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHhh
Q 002664 246 ALFLLDEMKNNAFSVDIVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGVAPDDVTYTSMIGVLCKSKRLEEAVAMFEQMDR 325 (895)
Q Consensus 246 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 325 (895)
|.++++..++.+ +.|..++-.-+...-.+|+--+|++-+.+..+. +..|...|.-+...|...|++++|.-++++++-
T Consensus 105 A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 105 AIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred HHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 777777777665 455666655555666666666666666666665 455666777777777777777777777777666
Q ss_pred CCCCCCHHhHHHHHHHHHccC---CHHHHHHHHHHHHhcC
Q 002664 326 NREVPCAYAYNTMIMGYGSVG---KFDEAFSLFERLKQKG 362 (895)
Q Consensus 326 ~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~ 362 (895)
..|. +.-.+..+...+...| +++-|.++|.+.++..
T Consensus 183 ~~P~-n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 183 IQPF-NPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred cCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 5543 4445555555544443 3455666666666653
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.46 E-value=2.6e-07 Score=57.35 Aligned_cols=32 Identities=44% Similarity=0.872 Sum_probs=18.8
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 002664 292 GVAPDDVTYTSMIGVLCKSKRLEEAVAMFEQM 323 (895)
Q Consensus 292 g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 323 (895)
|+.||..||++||.+||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45555556666666666666666666555554
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.46 E-value=3.9e-05 Score=77.69 Aligned_cols=138 Identities=20% Similarity=0.184 Sum_probs=72.5
Q ss_pred HHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCCHhH
Q 002664 691 FGKVGRIDEAYLIMEELMQKGLTPNAYTWNCLLDALVKAEEISEAFVCFQSMKDLKCTPN-HVTYSIIINGLCRVRKFNK 769 (895)
Q Consensus 691 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~ 769 (895)
+...|.+++|...++.+++. .+-|+..+......+.+.++.++|.+.+++++... |+ ....-.+..+|.+.|++.+
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~--P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALALD--PNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CCccHHHHHHHHHHHhcCChHH
Confidence 34455566666666665553 22245555555555566666666666666665522 33 2333345555556666666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002664 770 AFVFWQEMQKQGFKPNTITYTTMISGLAKAGNITEANGLFERFKENGGVPDSACYNAMMEGLSNANRAMDAYTLFEETRR 849 (895)
Q Consensus 770 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 849 (895)
|+.+++..... .+.|+..|..|..+|...|+..+|.... +..|.-.|++++|+.++....+
T Consensus 393 ai~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A~------------------AE~~~~~G~~~~A~~~l~~A~~ 453 (484)
T COG4783 393 AIRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLAR------------------AEGYALAGRLEQAIIFLMRASQ 453 (484)
T ss_pred HHHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHHH------------------HHHHHhCCCHHHHHHHHHHHHH
Confidence 66655555543 3444555666666666666555554322 2233334566666655555554
Q ss_pred C
Q 002664 850 K 850 (895)
Q Consensus 850 ~ 850 (895)
.
T Consensus 454 ~ 454 (484)
T COG4783 454 Q 454 (484)
T ss_pred h
Confidence 4
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=98.43 E-value=0.0028 Score=63.76 Aligned_cols=79 Identities=11% Similarity=0.130 Sum_probs=57.5
Q ss_pred HHHHHCCCCCC----HHHHHHHHHH--HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002664 775 QEMQKQGFKPN----TITYTTMISG--LAKAGNITEANGLFERFKENGGVPDSACYNAMMEGLSNANRAMDAYTLFEETR 848 (895)
Q Consensus 775 ~~~~~~~~~p~----~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 848 (895)
+-+.+.|+.|- ...-|.|..+ +..+|++.++.-.-.-+.+ +.|++.+|..++-.+....++++|..++..+
T Consensus 445 ~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L- 521 (549)
T PF07079_consen 445 DFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL- 521 (549)
T ss_pred HHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC-
Confidence 33334466663 3466667666 6678899888877777766 8888899998888888888999998888875
Q ss_pred HCCCCCCHhhHH
Q 002664 849 RKGFNIHTKTCV 860 (895)
Q Consensus 849 ~~~~~~~~~~~~ 860 (895)
||+..++.
T Consensus 522 ----P~n~~~~d 529 (549)
T PF07079_consen 522 ----PPNERMRD 529 (549)
T ss_pred ----CCchhhHH
Confidence 66655443
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.2e-05 Score=71.22 Aligned_cols=110 Identities=18% Similarity=0.146 Sum_probs=69.6
Q ss_pred HHHHHhhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCC
Q 002664 319 MFEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLFERLKQKGCIPSVIAYNSLLTCLGKKGRVTEAMKIFEAMKKDAR 398 (895)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 398 (895)
.|++++...+. +......++..+...|++++|...++.+...+. .+...+..+..++...|++++|...++...+..|
T Consensus 5 ~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p 82 (135)
T TIGR02552 5 TLKDLLGLDSE-QLEQIYALAYNLYQQGRYDEALKLFQLLAAYDP-YNSRYWLGLAACCQMLKEYEEAIDAYALAAALDP 82 (135)
T ss_pred hHHHHHcCChh-hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 34444444443 444555566666666666666666666666542 2555666666666666777777777766666666
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 002664 399 PNNTTYNVLIDMLCKAGNFEDALKFRDAMKEA 430 (895)
Q Consensus 399 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 430 (895)
.+...+..++.++...|++++|...++...+.
T Consensus 83 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 83 DDPRPYFHAAECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 66666777777777777777777777766664
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.35 E-value=5.8e-07 Score=55.79 Aligned_cols=33 Identities=45% Similarity=0.751 Sum_probs=26.6
Q ss_pred CCCCChHhHHHHHHHHHhcCChhhHHHHHHHHH
Q 002664 257 AFSVDIVLYNVCIDCFGKVGKVDMAWKFFHEMK 289 (895)
Q Consensus 257 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 289 (895)
|+.||..+|+.+|++||+.|++++|.++|++|.
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 567888888888888888888888888888773
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.00016 Score=62.92 Aligned_cols=139 Identities=16% Similarity=0.150 Sum_probs=72.8
Q ss_pred CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHH
Q 002664 749 PNHVTYSIIINGLCRVRKFNKAFVFWQEMQKQGFKPNTITYTTMISGLAKAGNITEANGLFERFKENGGVP---DSACYN 825 (895)
Q Consensus 749 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p---~~~~~~ 825 (895)
|....-..|..++.+.|++.||...|++...--+.-|......+.++....+++..|...++++.+. .| ++....
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~--~pa~r~pd~~L 164 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEY--NPAFRSPDGHL 164 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhc--CCccCCCCchH
Confidence 4444444555555555666666666555554323334555555555555556666666666555552 22 233444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhhhh
Q 002664 826 AMMEGLSNANRAMDAYTLFEETRRKGFNIHTKTCVILLDALHKAECLEQAAIVGAVLRETAKSQHA 891 (895)
Q Consensus 826 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 891 (895)
.+++.|...|++.+|..-|+.++.. -|.......-+..+.+.|+..+|..-...+.+..++..|
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~~~r~~~ 228 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAVVDTAKRSRP 228 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcch
Confidence 5555555566666566656555554 344444444445555555555555444445444444444
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.0058 Score=61.63 Aligned_cols=204 Identities=17% Similarity=0.200 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHH-------HHHHHHHcc----CChHHHHHHHHHHHHCCCCCC
Q 002664 577 QSYSILIHGLVKAGFAHETDQLFYAMKKQGCVLDTRAYN-------TVVDGFCKS----GKVNKAYQLLEEMKTKGHYPT 645 (895)
Q Consensus 577 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-------~l~~~~~~~----g~~~~A~~~~~~~~~~~~~p~ 645 (895)
.++..++...++.++...|.+.+.-+.-. .|+...-. .+.+..+.. -+..+=+.+++.....++. .
T Consensus 299 ~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiD-r 375 (549)
T PF07079_consen 299 DRFGNLLSFKVKQVQTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDID-R 375 (549)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccc-H
Confidence 45566666677777777777776655543 22222111 111222211 1222333444444433221 1
Q ss_pred HHhHHHHH---HHHHccCC-HHHHHHHHHHHHHcCCCcCHHHHHHHH----HHHHc---cCCHHHHHHHHHHHHHCCCCC
Q 002664 646 VVTYGSVI---DGLAKIDR-LDEAYMLFEEAKSKGIELNTVIYSSLI----DGFGK---VGRIDEAYLIMEELMQKGLTP 714 (895)
Q Consensus 646 ~~~~~~l~---~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~l~----~~~~~---~g~~~~A~~~~~~~~~~~~~p 714 (895)
......++ .-+.+.|. -++|+.+++.+++.. +.|...-+.+. ..|.. ...+.+-.++-+-+.+.|++|
T Consensus 376 qQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~ 454 (549)
T PF07079_consen 376 QQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTP 454 (549)
T ss_pred HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCc
Confidence 11111122 22344444 566777777776642 33443333221 11211 122333334434444456655
Q ss_pred ----CHHHHHHHHHH--HHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHH
Q 002664 715 ----NAYTWNCLLDA--LVKAEEISEAFVCFQSMKDLKCTPNHVTYSIIINGLCRVRKFNKAFVFWQEMQKQGFKPNTIT 788 (895)
Q Consensus 715 ----~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 788 (895)
+...-|.|.++ +..+|++.++.-.-.-+.+ +.|++.+|..++-++...++|++|..++.. ++|+..+
T Consensus 455 i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~-----LP~n~~~ 527 (549)
T PF07079_consen 455 ITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQK-----LPPNERM 527 (549)
T ss_pred ccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHh-----CCCchhh
Confidence 23334444433 3456666666655555554 556666666666666666677777766654 3455555
Q ss_pred HHH
Q 002664 789 YTT 791 (895)
Q Consensus 789 ~~~ 791 (895)
++.
T Consensus 528 ~ds 530 (549)
T PF07079_consen 528 RDS 530 (549)
T ss_pred HHH
Confidence 443
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.0004 Score=68.69 Aligned_cols=279 Identities=14% Similarity=0.045 Sum_probs=146.9
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCC-CHHHHHHHHHHHHh
Q 002664 231 TTLIRVFAREGRVDDALFLLDEMKNNAFSVDIVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGVAP-DDVTYTSMIGVLCK 309 (895)
Q Consensus 231 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~ 309 (895)
......+.+..++.+|+..+....+.. +.+...|..-+..+...|++++|.--.+.-++. +| ....+.....++..
T Consensus 53 k~~gn~~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~--kd~~~k~~~r~~~c~~a 129 (486)
T KOG0550|consen 53 KEEGNAFYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDARQSVRL--KDGFSKGQLREGQCHLA 129 (486)
T ss_pred HhhcchHHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchhhheec--CCCccccccchhhhhhh
Confidence 334455555556666666666555553 222334444444455555555555544444332 11 11233334444444
Q ss_pred cCCHhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhcCCC-CCHHHHHHH-HHHHHhcCCHHHHH
Q 002664 310 SKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLFERLKQKGCI-PSVIAYNSL-LTCLGKKGRVTEAM 387 (895)
Q Consensus 310 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l-~~~~~~~g~~~~A~ 387 (895)
.++..+|.+.++. ...+ ....|+..++........ |.-..+..+ ..++.-.|++++|.
T Consensus 130 ~~~~i~A~~~~~~---------~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~ 189 (486)
T KOG0550|consen 130 LSDLIEAEEKLKS---------KQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQ 189 (486)
T ss_pred hHHHHHHHHHhhh---------hhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHH
Confidence 4444444444441 0001 111222222322222211 222333322 34566778888888
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHH-------------HHHHHHhcCChhH
Q 002664 388 KIFEAMKKDARPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEAGLFPNVMTVNI-------------MVDRLCKAQKLDE 454 (895)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-------------l~~~~~~~g~~~~ 454 (895)
+.--.+.+..+.+......-..++.-.++.+.|...|++.+..+ |+...-.. -..-..+.|.+..
T Consensus 190 ~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~ 267 (486)
T KOG0550|consen 190 SEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRK 267 (486)
T ss_pred HHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhH
Confidence 88888887777777777777777777888888888888887754 44332211 1223445566666
Q ss_pred HHHHHHHhhhCC---CCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHH
Q 002664 455 AFSIFEGMDHKT---CTPDAVTFCSLIDGLGKNGRVDDAYKFYEKMLDTDQIPNAILYTSLIRNFFKHGRKEDGHKIYKE 531 (895)
Q Consensus 455 A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 531 (895)
|.+.+.+.+..+ ..+++..|........+.|+.++|+.-.+.+++.+.. -...+..-+.++...++|++|.+-++.
T Consensus 268 A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~s-yikall~ra~c~l~le~~e~AV~d~~~ 346 (486)
T KOG0550|consen 268 AYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSS-YIKALLRRANCHLALEKWEEAVEDYEK 346 (486)
T ss_pred HHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666655442 2344445555555666666666666666666655321 223344444555556666666666666
Q ss_pred HHHc
Q 002664 532 MVQR 535 (895)
Q Consensus 532 ~~~~ 535 (895)
..+.
T Consensus 347 a~q~ 350 (486)
T KOG0550|consen 347 AMQL 350 (486)
T ss_pred HHhh
Confidence 6554
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.29 E-value=3.2e-05 Score=68.44 Aligned_cols=96 Identities=13% Similarity=0.074 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHH
Q 002664 752 VTYSIIINGLCRVRKFNKAFVFWQEMQKQGFKPNTITYTTMISGLAKAGNITEANGLFERFKENGGVP-DSACYNAMMEG 830 (895)
Q Consensus 752 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~ 830 (895)
.....++..+...|++++|...++.+.+.+ +.+...|..+..++...|++++|...+++.++ ..| +...+..++..
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~la~~ 94 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAA--LDPDDPRPYFHAAEC 94 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCCChHHHHHHHHH
Confidence 334455556666666666666666665532 23455666666666666666777666666665 334 45666666666
Q ss_pred HHhcCCHHHHHHHHHHHHHC
Q 002664 831 LSNANRAMDAYTLFEETRRK 850 (895)
Q Consensus 831 ~~~~g~~~~A~~~~~~~~~~ 850 (895)
+...|++++|...+++.++.
T Consensus 95 ~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 95 LLALGEPESALKALDLAIEI 114 (135)
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 66667777777776666665
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.24 E-value=6.6e-05 Score=74.02 Aligned_cols=284 Identities=14% Similarity=-0.009 Sum_probs=167.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHc
Q 002664 579 YSILIHGLVKAGFAHETDQLFYAMKKQGCVLDTRAYNTVVDGFCKSGKVNKAYQLLEEMKTKGHYPTVVTYGSVIDGLAK 658 (895)
Q Consensus 579 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 658 (895)
.......+.+...+..|+..+...++.. +.+...|..-+..+...|++++|.--.++-.+.... ...........+..
T Consensus 52 ~k~~gn~~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~-~~k~~~r~~~c~~a 129 (486)
T KOG0550|consen 52 AKEEGNAFYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDG-FSKGQLREGQCHLA 129 (486)
T ss_pred HHhhcchHHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchhhheecCCC-ccccccchhhhhhh
Confidence 3445556777778888888888888774 334556666666677777777777666555443211 22244445555666
Q ss_pred cCCHHHHHHHHHHHHH-----------c----C-CCcCHHHHHHH-HHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 002664 659 IDRLDEAYMLFEEAKS-----------K----G-IELNTVIYSSL-IDGFGKVGRIDEAYLIMEELMQKGLTPNAYTWNC 721 (895)
Q Consensus 659 ~~~~~~A~~~~~~~~~-----------~----~-~~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 721 (895)
.++..+|.+.++.-.. . . -+|.-..+..+ ..++.-.|++++|..+--..++..- .+......
T Consensus 130 ~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~-~n~~al~v 208 (486)
T KOG0550|consen 130 LSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDA-TNAEALYV 208 (486)
T ss_pred hHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhccc-chhHHHHh
Confidence 6666666666653210 0 0 01111222222 2345567888888888777776321 13333333
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHH-------------HHHHHHHhcCCHhHHHHHHHHHHHC---CCCCC
Q 002664 722 LLDALVKAEEISEAFVCFQSMKDLKCTPNHVTYS-------------IIINGLCRVRKFNKAFVFWQEMQKQ---GFKPN 785 (895)
Q Consensus 722 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~-------------~l~~~~~~~g~~~~A~~~~~~~~~~---~~~p~ 785 (895)
-..++.-.++.+.|...|++.+..+ |+...-- .-.+-..+.|++.+|.+.|.+.+.. +..|+
T Consensus 209 rg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~n 286 (486)
T KOG0550|consen 209 RGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTN 286 (486)
T ss_pred cccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchh
Confidence 3344555778888888888888744 6543211 1223345778888888888888753 23333
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHhhHHHHH
Q 002664 786 TITYTTMISGLAKAGNITEANGLFERFKENGGVPD-SACYNAMMEGLSNANRAMDAYTLFEETRRKGFN-IHTKTCVILL 863 (895)
Q Consensus 786 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~ 863 (895)
...|.....+..+.|+..+|+.--+.++. +.|. ...+..-+.++...++|++|.+-+++..+..-. ....++....
T Consensus 287 aklY~nra~v~~rLgrl~eaisdc~~Al~--iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s~e~r~~l~~A~ 364 (486)
T KOG0550|consen 287 AKLYGNRALVNIRLGRLREAISDCNEALK--IDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKDCEIRRTLREAQ 364 (486)
T ss_pred HHHHHHhHhhhcccCCchhhhhhhhhhhh--cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHH
Confidence 45566666667788888888888888776 5442 344444555666778888888888887766322 2333444444
Q ss_pred HHHHhc
Q 002664 864 DALHKA 869 (895)
Q Consensus 864 ~~~~~~ 869 (895)
..+.++
T Consensus 365 ~aLkkS 370 (486)
T KOG0550|consen 365 LALKKS 370 (486)
T ss_pred HHHHHh
Confidence 444433
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=3.6e-05 Score=66.58 Aligned_cols=94 Identities=14% Similarity=0.006 Sum_probs=60.6
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHH
Q 002664 753 TYSIIINGLCRVRKFNKAFVFWQEMQKQGFKP-NTITYTTMISGLAKAGNITEANGLFERFKENGGVP-DSACYNAMMEG 830 (895)
Q Consensus 753 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~ 830 (895)
..-.+...+...|++++|..+|+-+.. +.| +..-|..|..++...|++++|+..|.++.. ..| |+..+..++.+
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~--~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~--L~~ddp~~~~~ag~c 112 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTI--YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQ--IKIDAPQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCCCCchHHHHHHHH
Confidence 333455556666777777777776665 333 345566666667777777777777777766 444 56667777777
Q ss_pred HHhcCCHHHHHHHHHHHHHC
Q 002664 831 LSNANRAMDAYTLFEETRRK 850 (895)
Q Consensus 831 ~~~~g~~~~A~~~~~~~~~~ 850 (895)
+...|+.++|++.|+.++..
T Consensus 113 ~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 113 YLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 77777777777777766554
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.16 E-value=9.9e-05 Score=76.08 Aligned_cols=120 Identities=13% Similarity=0.078 Sum_probs=67.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 002664 722 LLDALVKAEEISEAFVCFQSMKDLKCTPNHVTYSIIINGLCRVRKFNKAFVFWQEMQKQGFKPNTITYTTMISGLAKAGN 801 (895)
Q Consensus 722 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 801 (895)
|+..+...++++.|+++++++.+.. |+. ...++..+...++..+|++++++.++. .+-+...+......|...|+
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCC
Confidence 3344444566666666666666533 432 233555555556666666666666543 22244444444555666666
Q ss_pred HHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002664 802 ITEANGLFERFKENGGVP-DSACYNAMMEGLSNANRAMDAYTLFEETR 848 (895)
Q Consensus 802 ~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 848 (895)
++.|+++.+++.+ ..| +..+|..|+.+|.+.|++++|+..++.+.
T Consensus 250 ~~lAL~iAk~av~--lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 250 YELALEIAKKAVE--LSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHHHH--hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 6666666666666 455 45566666666666666666666655543
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.16 E-value=3.3e-05 Score=75.69 Aligned_cols=282 Identities=15% Similarity=0.087 Sum_probs=132.1
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCC---CCHHhHHHHHHHHHccCChHHHHHHHHHHHH--C--CCC-CCHHhHHHHHHH
Q 002664 584 HGLVKAGFAHETDQLFYAMKKQGCV---LDTRAYNTVVDGFCKSGKVNKAYQLLEEMKT--K--GHY-PTVVTYGSVIDG 655 (895)
Q Consensus 584 ~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~--~~~-p~~~~~~~l~~~ 655 (895)
.-+|+.|+......+|+..++.|.. .=+.+|..|.++|.-.+++++|+++...=+. + |-+ -.......+.+.
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt 104 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT 104 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence 3478888888888888888887632 1145677777888888888888887653221 1 111 112233345555
Q ss_pred HHccCCHHHHHHHHHHHH----HcCCC-cCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 002664 656 LAKIDRLDEAYMLFEEAK----SKGIE-LNTVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNAYTWNCLLDALVKAE 730 (895)
Q Consensus 656 ~~~~~~~~~A~~~~~~~~----~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 730 (895)
+.-.|.+++|+-...+-+ +.|-. .....+..+...|...|+-..... -.+.|-.++.++ .
T Consensus 105 lKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~----pee~g~f~~ev~-----------~ 169 (639)
T KOG1130|consen 105 LKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEA----PEEKGAFNAEVT-----------S 169 (639)
T ss_pred hhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCC----hhhcccccHHHH-----------H
Confidence 566677777665544322 22211 122334445555555442100000 000000000000 0
Q ss_pred CHHHHHHHHHHHHh----cCCC-CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH----CCCCC-CHHHHHHHHHHHHhcC
Q 002664 731 EISEAFVCFQSMKD----LKCT-PNHVTYSIIINGLCRVRKFNKAFVFWQEMQK----QGFKP-NTITYTTMISGLAKAG 800 (895)
Q Consensus 731 ~~~~A~~~~~~~~~----~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p-~~~~~~~l~~~~~~~g 800 (895)
.++.|.+.|.+-++ .|-. .--..|-.|.+.|.-.|+++.|+...+.-++ -|-.. ....+..+..++.-.|
T Consensus 170 al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg 249 (639)
T KOG1130|consen 170 ALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLG 249 (639)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhc
Confidence 11222222222111 0000 0012334444445555566666554432221 12111 1235555666666666
Q ss_pred CHHHHHHHHHHHHH----CCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCCCHhhHHHHHHHHHhcC
Q 002664 801 NITEANGLFERFKE----NGGV-PDSACYNAMMEGLSNANRAMDAYTLFEETRRK-----GFNIHTKTCVILLDALHKAE 870 (895)
Q Consensus 801 ~~~~A~~~~~~~~~----~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g 870 (895)
+++.|.+.|+.... .|.. ........|+..|.-..++++|+.++.+-+.- .......+++.|+.+|...|
T Consensus 250 ~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg 329 (639)
T KOG1130|consen 250 NFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALG 329 (639)
T ss_pred ccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhh
Confidence 66666666555422 1211 13344455666666666666666665543221 11233455666666666666
Q ss_pred CHHHHHHHHH
Q 002664 871 CLEQAAIVGA 880 (895)
Q Consensus 871 ~~~~A~~~~~ 880 (895)
..++|.....
T Consensus 330 ~h~kAl~fae 339 (639)
T KOG1130|consen 330 EHRKALYFAE 339 (639)
T ss_pred hHHHHHHHHH
Confidence 6666654333
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.00014 Score=64.79 Aligned_cols=114 Identities=20% Similarity=0.214 Sum_probs=47.7
Q ss_pred cCCHhHHHHHHHHHhhCCCCCC---HHhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCCHH
Q 002664 310 SKRLEEAVAMFEQMDRNREVPC---AYAYNTMIMGYGSVGKFDEAFSLFERLKQKGCIPS--VIAYNSLLTCLGKKGRVT 384 (895)
Q Consensus 310 ~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~ 384 (895)
.++...+...++.+....+. + ..+...+...+...|++++|...|+.+......|. ......|..++...|+++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~-s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPS-SPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 44444444444444444332 1 12222233444445555555555555544431111 112333444444444444
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 002664 385 EAMKIFEAMKKDARPNNTTYNVLIDMLCKAGNFEDALKFRD 425 (895)
Q Consensus 385 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 425 (895)
+|+..++... ..+..+..+...+.+|...|++++|...|+
T Consensus 103 ~Al~~L~~~~-~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~ 142 (145)
T PF09976_consen 103 EALATLQQIP-DEAFKALAAELLGDIYLAQGDYDEARAAYQ 142 (145)
T ss_pred HHHHHHHhcc-CcchHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 4444443321 122233344444444455555555544444
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.13 E-value=3.3e-05 Score=75.70 Aligned_cols=284 Identities=11% Similarity=0.042 Sum_probs=137.9
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHH--HHc--CC-CCCHHhHHHHHH
Q 002664 549 DCVFKAGETEKGRALFEEIKAQGFVPDV----QSYSILIHGLVKAGFAHETDQLFYAM--KKQ--GC-VLDTRAYNTVVD 619 (895)
Q Consensus 549 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~--~~-~~~~~~~~~l~~ 619 (895)
.-+|+.|+......+|+.++.-|-. |. ..|..|.++|.-.+++++|.++...= +.+ |- .-.......|.+
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 4689999999999999999998733 43 45677778888888899988765321 111 10 112334445666
Q ss_pred HHHccCChHHHHHHHHHHHH----CCCC-CCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHcc
Q 002664 620 GFCKSGKVNKAYQLLEEMKT----KGHY-PTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNTVIYSSLIDGFGKV 694 (895)
Q Consensus 620 ~~~~~g~~~~A~~~~~~~~~----~~~~-p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 694 (895)
.+--.|.+++|+-...+-+. .|-. .....+..+...|...|+--.. ....+.|-.++.+ -
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~----~~pee~g~f~~ev-~---------- 168 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGL----EAPEEKGAFNAEV-T---------- 168 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCC----CChhhcccccHHH-H----------
Confidence 66677888888877654432 2211 1223444556666544431000 0000001000000 0
Q ss_pred CCHHHHHHHHHHHHH----CCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----cCCC-CCHHHHHHHHHHHHhc
Q 002664 695 GRIDEAYLIMEELMQ----KGLT-PNAYTWNCLLDALVKAEEISEAFVCFQSMKD----LKCT-PNHVTYSIIINGLCRV 764 (895)
Q Consensus 695 g~~~~A~~~~~~~~~----~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~-p~~~~~~~l~~~~~~~ 764 (895)
..++.|.++|.+-++ .|-. .--.+|..|.+.|.-.|+++.|+..-+.-+. .|-. .....+..+.+++...
T Consensus 169 ~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hifl 248 (639)
T KOG1130|consen 169 SALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFL 248 (639)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhh
Confidence 011222222222111 0000 0112344455555555555555544332221 1100 1123445555666666
Q ss_pred CCHhHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHHhc
Q 002664 765 RKFNKAFVFWQEMQKQ----GF-KPNTITYTTMISGLAKAGNITEANGLFERFKEN-----GGVPDSACYNAMMEGLSNA 834 (895)
Q Consensus 765 g~~~~A~~~~~~~~~~----~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~p~~~~~~~l~~~~~~~ 834 (895)
|+++.|.+.|+..... |- .........|...|.-..++++|+.++.+-+.- ........+..|+.++-..
T Consensus 249 g~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~al 328 (639)
T KOG1130|consen 249 GNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNAL 328 (639)
T ss_pred cccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 6666666665544322 11 111233445555555555666666655543221 1122345556666666666
Q ss_pred CCHHHHHHHHHHHH
Q 002664 835 NRAMDAYTLFEETR 848 (895)
Q Consensus 835 g~~~~A~~~~~~~~ 848 (895)
|..++|+.+.+..+
T Consensus 329 g~h~kAl~fae~hl 342 (639)
T KOG1130|consen 329 GEHRKALYFAELHL 342 (639)
T ss_pred hhHHHHHHHHHHHH
Confidence 66666666655544
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00012 Score=65.37 Aligned_cols=116 Identities=18% Similarity=0.174 Sum_probs=62.1
Q ss_pred cCCHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh--hhHHHHHHHHHhcCChhH
Q 002664 380 KGRVTEAMKIFEAMKKDARPN---NTTYNVLIDMLCKAGNFEDALKFRDAMKEAGLFPNV--MTVNIMVDRLCKAQKLDE 454 (895)
Q Consensus 380 ~g~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~ 454 (895)
.++...+...++.+.+..|.+ ..+...++..+...|++++|...|+.+......|+. .....+...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 555555555555555544444 233444556666666666666666666654411211 122334555556666666
Q ss_pred HHHHHHHhhhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHH
Q 002664 455 AFSIFEGMDHKTCTPDAVTFCSLIDGLGKNGRVDDAYKFYEKM 497 (895)
Q Consensus 455 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 497 (895)
|+..++..... ...+..+...+.++.+.|+.++|...|+..
T Consensus 104 Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 104 ALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 66666553322 223344555666666666666666666553
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00013 Score=75.29 Aligned_cols=126 Identities=15% Similarity=0.162 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 002664 682 VIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNAYTWNCLLDALVKAEEISEAFVCFQSMKDLKCTPNHVTYSIIINGL 761 (895)
Q Consensus 682 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 761 (895)
.....++..+...++++.|+.+++++.+.. |+. ...++..+...++-.+|++++++.++.. +-+...+..-+..|
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fL 244 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFL 244 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 344566677777899999999999999854 554 4457888888899999999999999743 44566666777889
Q ss_pred HhcCCHhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002664 762 CRVRKFNKAFVFWQEMQKQGFKPN-TITYTTMISGLAKAGNITEANGLFERFKE 814 (895)
Q Consensus 762 ~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 814 (895)
...++++.|+++.+++.+ ..|+ ..+|..|+.+|...|+++.|+-.++.+--
T Consensus 245 l~k~~~~lAL~iAk~av~--lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVE--LSPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred HhcCCHHHHHHHHHHHHH--hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 999999999999999998 5566 45999999999999999999988887753
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.04 E-value=9.8e-06 Score=64.21 Aligned_cols=80 Identities=19% Similarity=0.178 Sum_probs=49.8
Q ss_pred cCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHH
Q 002664 799 AGNITEANGLFERFKENGG-VPDSACYNAMMEGLSNANRAMDAYTLFEETRRKGFNIHTKTCVILLDALHKAECLEQAAI 877 (895)
Q Consensus 799 ~g~~~~A~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 877 (895)
.|+++.|+.+++++++... .|+...+..++.+|++.|++++|+.++++ ...+ +.+......++.++.+.|++++|+.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 4677777777777777322 11345555677777777777777777776 2222 3344556666777777777777776
Q ss_pred HHH
Q 002664 878 VGA 880 (895)
Q Consensus 878 ~~~ 880 (895)
+..
T Consensus 80 ~l~ 82 (84)
T PF12895_consen 80 ALE 82 (84)
T ss_dssp HHH
T ss_pred HHh
Confidence 544
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00016 Score=68.82 Aligned_cols=97 Identities=20% Similarity=0.201 Sum_probs=60.0
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHhcC
Q 002664 688 IDGFGKVGRIDEAYLIMEELMQKGLTP-NAYTWNCLLDALVKAEEISEAFVCFQSMKDLKCTPNH-VTYSIIINGLCRVR 765 (895)
Q Consensus 688 ~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g 765 (895)
..-..+.+++++|+..|.++++ +.| |++.|..-..+|.+.|.++.|++-.+..+. +.|.. .+|..|..+|...|
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~g 163 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALG 163 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccC
Confidence 3445556666667766666666 334 555566666666666666666666666665 33433 45666666666666
Q ss_pred CHhHHHHHHHHHHHCCCCCCHHHHH
Q 002664 766 KFNKAFVFWQEMQKQGFKPNTITYT 790 (895)
Q Consensus 766 ~~~~A~~~~~~~~~~~~~p~~~~~~ 790 (895)
++++|++.|++.++ +.|+..+|-
T Consensus 164 k~~~A~~aykKaLe--ldP~Ne~~K 186 (304)
T KOG0553|consen 164 KYEEAIEAYKKALE--LDPDNESYK 186 (304)
T ss_pred cHHHHHHHHHhhhc--cCCCcHHHH
Confidence 66666666666665 566655443
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.0019 Score=56.50 Aligned_cols=133 Identities=16% Similarity=0.132 Sum_probs=94.9
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC---HHH
Q 002664 712 LTPNAYTWNCLLDALVKAEEISEAFVCFQSMKDLKCTPNHVTYSIIINGLCRVRKFNKAFVFWQEMQKQGFKPN---TIT 788 (895)
Q Consensus 712 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~ 788 (895)
..|+...-..|..++...|+..+|...|++...--...|......+.++....+++.+|...++++-+.+ |. +.+
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~--pa~r~pd~ 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYN--PAFRSPDG 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcC--CccCCCCc
Confidence 3466666667778888888888888888888763334566666777778888888888888888777642 32 334
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002664 789 YTTMISGLAKAGNITEANGLFERFKENGGVPDSACYNAMMEGLSNANRAMDAYTLFEETR 848 (895)
Q Consensus 789 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 848 (895)
...+.+.+...|+.++|...|+.++. .-|++..-...+..+.++|+.++|..-+..+.
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~~--~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAIS--YYPGPQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHHH--hCCCHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 55567778888888888888888887 66776666666777788887777766655543
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.031 Score=59.43 Aligned_cols=206 Identities=11% Similarity=0.116 Sum_probs=117.1
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH----------HHhcCChhHHHHHHHHhhhCC
Q 002664 397 ARPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEAGLFPNVMTVNIMVDR----------LCKAQKLDEAFSIFEGMDHKT 466 (895)
Q Consensus 397 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~----------~~~~g~~~~A~~~~~~~~~~~ 466 (895)
..|.+..|..++......-.++.|...|-+...- +.......+-.. -.--|++++|.+++-++..++
T Consensus 688 dnPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY---~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD 764 (1189)
T KOG2041|consen 688 DNPHPRLWRLLAEYALFKLALDTAEHAFVRCGDY---AGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD 764 (1189)
T ss_pred cCCchHHHHHHHHHHHHHHhhhhHhhhhhhhccc---cchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh
Confidence 3566777777777777777777777666555431 222111111111 112378888888887766552
Q ss_pred CCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhC-CCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHH
Q 002664 467 CTPDAVTFCSLIDGLGKNGRVDDAYKFYEKMLDT-DQIPNAILYTSLIRNFFKHGRKEDGHKIYKEMVQRGCSPDLMLLN 545 (895)
Q Consensus 467 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 545 (895)
..+..+.+.|++-...++++.--.. +-..-..++..++..+.....|++|.+.|..... ..
T Consensus 765 ---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~---------~e 826 (1189)
T KOG2041|consen 765 ---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD---------TE 826 (1189)
T ss_pred ---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------hH
Confidence 2355566777776666555432110 0011234677788888888888888888765432 13
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccC
Q 002664 546 TYMDCVFKAGETEKGRALFEEIKAQGFVPDVQSYSILIHGLVKAGFAHETDQLFYAMKKQGCVLDTRAYNTVVDGFCKSG 625 (895)
Q Consensus 546 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 625 (895)
.++.++.+...+++-..+...+ +.+....-.+..++.+.|.-++|.+.+-+... | ...+..|...+
T Consensus 827 ~~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~----p-----kaAv~tCv~Ln 892 (1189)
T KOG2041|consen 827 NQIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRRSL----P-----KAAVHTCVELN 892 (1189)
T ss_pred hHHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhccC----c-----HHHHHHHHHHH
Confidence 4556666666666655444433 23445556677777777777777765533221 1 12344566666
Q ss_pred ChHHHHHHHHHH
Q 002664 626 KVNKAYQLLEEM 637 (895)
Q Consensus 626 ~~~~A~~~~~~~ 637 (895)
++.+|.++-+..
T Consensus 893 QW~~avelaq~~ 904 (1189)
T KOG2041|consen 893 QWGEAVELAQRF 904 (1189)
T ss_pred HHHHHHHHHHhc
Confidence 777776665543
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00029 Score=60.58 Aligned_cols=96 Identities=11% Similarity=0.085 Sum_probs=53.9
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-C-CHHHHHH
Q 002664 753 TYSIIINGLCRVRKFNKAFVFWQEMQKQGFKPN----TITYTTMISGLAKAGNITEANGLFERFKENGGV-P-DSACYNA 826 (895)
Q Consensus 753 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p-~~~~~~~ 826 (895)
++..++..+.+.|++++|.+.++.+.+. .|+ ...+..++.++...|++++|...++++...... | ....+..
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKK--YPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 3444555555666666666666666543 122 234455566666666666666666666552111 1 1345556
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC
Q 002664 827 MMEGLSNANRAMDAYTLFEETRRK 850 (895)
Q Consensus 827 l~~~~~~~g~~~~A~~~~~~~~~~ 850 (895)
++.++.+.|++++|...++++++.
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHH
Confidence 666666666666666666666665
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00026 Score=60.90 Aligned_cols=22 Identities=23% Similarity=0.308 Sum_probs=9.0
Q ss_pred HHHHHHccCCHHHHHHHHHHHH
Q 002664 338 MIMGYGSVGKFDEAFSLFERLK 359 (895)
Q Consensus 338 l~~~~~~~g~~~~A~~~~~~~~ 359 (895)
++..+.+.|+++.|...|+.+.
T Consensus 45 l~~~~~~~~~~~~A~~~~~~~~ 66 (119)
T TIGR02795 45 LGEAYYAQGKYADAAKAFLAVV 66 (119)
T ss_pred HHHHHHhhccHHHHHHHHHHHH
Confidence 3334444444444444444433
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.0019 Score=62.89 Aligned_cols=177 Identities=16% Similarity=0.155 Sum_probs=104.7
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH-
Q 002664 687 LIDGFGKVGRIDEAYLIMEELMQKGLTPNAYT---WNCLLDALVKAEEISEAFVCFQSMKDLKCTPNHVTYSIIINGLC- 762 (895)
Q Consensus 687 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~- 762 (895)
.+..+...|++++|++.|+.+...... +... ...++.+|.+.+++++|...+++.++.........|.....+.+
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~-s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~ 116 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPF-GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTN 116 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhh
Confidence 344455567777777777777763222 2222 23456677777777777777777776432211222222222221
Q ss_pred -hc---------------CC---HhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 002664 763 -RV---------------RK---FNKAFVFWQEMQKQGFKPNTITYTTMISGLAKAGNITEANGLFERFKENGGVPDSAC 823 (895)
Q Consensus 763 -~~---------------g~---~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 823 (895)
.. .+ ..+|+..|+++++. -|+. .-..+|...+..+... =...
T Consensus 117 ~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--yP~S-------------~ya~~A~~rl~~l~~~----la~~ 177 (243)
T PRK10866 117 MALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--YPNS-------------QYTTDATKRLVFLKDR----LAKY 177 (243)
T ss_pred hhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--CcCC-------------hhHHHHHHHHHHHHHH----HHHH
Confidence 11 11 23455666666653 3332 2233444333333220 0112
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002664 824 YNAMMEGLSNANRAMDAYTLFEETRRK--GFNIHTKTCVILLDALHKAECLEQAAIVGAVLR 883 (895)
Q Consensus 824 ~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~l~ 883 (895)
-...++.|.+.|++..|+.-++.+++. +.+....+...+..+|...|..++|..+.+.+.
T Consensus 178 e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 178 ELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 235677899999999999999999987 334456778899999999999999998776653
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.03 Score=55.52 Aligned_cols=248 Identities=15% Similarity=0.092 Sum_probs=102.6
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHh--HHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCCHHHHH
Q 002664 589 AGFAHETDQLFYAMKKQGCVLDTRA--YNTVVDGFCKSGKVNKAYQLLEEMKTKGHYPTVVTYGSVIDGLAKIDRLDEAY 666 (895)
Q Consensus 589 ~g~~~~A~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~ 666 (895)
.|+++.|.+-|+.|... |.... ...|.-.-.+.|..+.|..+-+.....-.. -.-.+...+...+..|+++.|+
T Consensus 133 eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~Al 208 (531)
T COG3898 133 EGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGAL 208 (531)
T ss_pred cCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHH
Confidence 45555555555555531 11111 111111222345555555555555443211 2223444455555555555555
Q ss_pred HHHHHHHHcC-CCcCHHHH--HHHHHHH---HccCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHH
Q 002664 667 MLFEEAKSKG-IELNTVIY--SSLIDGF---GKVGRIDEAYLIMEELMQKGLTPNAY-TWNCLLDALVKAEEISEAFVCF 739 (895)
Q Consensus 667 ~~~~~~~~~~-~~~~~~~~--~~l~~~~---~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~ 739 (895)
++.+...... +.++..-- ..|+.+- .-..+...|...-.+..+ +.||.+ .-..-..++.+.|++.++-.++
T Consensus 209 kLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~il 286 (531)
T COG3898 209 KLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKIL 286 (531)
T ss_pred HHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHH
Confidence 5555544321 22222111 1111111 111234444444444433 333321 1112234455555555555555
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 002664 740 QSMKDLKCTPNHVTYSIIINGLCRVRKFNKAFVFWQEMQKQ-GFKPN-TITYTTMISGLAKAGNITEANGLFERFKENGG 817 (895)
Q Consensus 740 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 817 (895)
+.+-+....|+. +. .|.+...-+.++.-+++.... .++|| ......+..+....|++..|..-.+.+.. .
T Consensus 287 E~aWK~ePHP~i--a~----lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~ 358 (531)
T COG3898 287 ETAWKAEPHPDI--AL----LYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--E 358 (531)
T ss_pred HHHHhcCCChHH--HH----HHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--h
Confidence 555553322322 11 122222222233223322211 13333 23444444445555555555555555544 4
Q ss_pred CCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHC
Q 002664 818 VPDSACYNAMMEGLSN-ANRAMDAYTLFEETRRK 850 (895)
Q Consensus 818 ~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~ 850 (895)
.|....|..|++.--. .|+-.+++.++-+..+.
T Consensus 359 ~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 359 APRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 4555555555554433 25555555555555444
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.032 Score=59.41 Aligned_cols=23 Identities=17% Similarity=0.235 Sum_probs=11.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHH
Q 002664 369 AYNSLLTCLGKKGRVTEAMKIFE 391 (895)
Q Consensus 369 ~~~~l~~~~~~~g~~~~A~~~~~ 391 (895)
+++.+...+.....+++|.+.|.
T Consensus 798 A~r~ig~~fa~~~~We~A~~yY~ 820 (1189)
T KOG2041|consen 798 AFRNIGETFAEMMEWEEAAKYYS 820 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555544
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.0003 Score=61.00 Aligned_cols=91 Identities=18% Similarity=0.072 Sum_probs=45.0
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 002664 338 MIMGYGSVGKFDEAFSLFERLKQKGCIPSVIAYNSLLTCLGKKGRVTEAMKIFEAMKKDARPNNTTYNVLIDMLCKAGNF 417 (895)
Q Consensus 338 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 417 (895)
+...+...|++++|.++|+.+...++. +...|..|..++...|++++|+..|.......|.++..+..++.++...|+.
T Consensus 41 ~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~ 119 (157)
T PRK15363 41 YAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNV 119 (157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCH
Confidence 333344445555555555544444321 3444444555555555555555555555444455555555555555555555
Q ss_pred HHHHHHHHHHHH
Q 002664 418 EDALKFRDAMKE 429 (895)
Q Consensus 418 ~~A~~~~~~~~~ 429 (895)
+.|.+.|+..+.
T Consensus 120 ~~A~~aF~~Ai~ 131 (157)
T PRK15363 120 CYAIKALKAVVR 131 (157)
T ss_pred HHHHHHHHHHHH
Confidence 555555554443
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00017 Score=59.12 Aligned_cols=91 Identities=15% Similarity=0.204 Sum_probs=44.1
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhc
Q 002664 756 IIINGLCRVRKFNKAFVFWQEMQKQGFKPNTITYTTMISGLAKAGNITEANGLFERFKENGGVP-DSACYNAMMEGLSNA 834 (895)
Q Consensus 756 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~ 834 (895)
.++..+...|++++|...++++.+. .+.+...+..++.++...|++++|.+.+++..+ ..| +..++..++..+...
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALEL-DPDNADAYYNLAAAYYKLGKYEEALEDYEKALE--LDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhc-CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCcchhHHHHHHHHHHHH
Confidence 3444455555555555555555442 112224444445555555555555555555544 222 334444555555555
Q ss_pred CCHHHHHHHHHHHHH
Q 002664 835 NRAMDAYTLFEETRR 849 (895)
Q Consensus 835 g~~~~A~~~~~~~~~ 849 (895)
|++++|...+++...
T Consensus 82 ~~~~~a~~~~~~~~~ 96 (100)
T cd00189 82 GKYEEALEAYEKALE 96 (100)
T ss_pred HhHHHHHHHHHHHHc
Confidence 555555555554443
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0005 Score=71.57 Aligned_cols=86 Identities=17% Similarity=0.064 Sum_probs=38.9
Q ss_pred HhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHH
Q 002664 762 CRVRKFNKAFVFWQEMQKQGFKPNTITYTTMISGLAKAGNITEANGLFERFKENGGVP-DSACYNAMMEGLSNANRAMDA 840 (895)
Q Consensus 762 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A 840 (895)
...|++++|++.|+++++.. +.+...|..+..+|...|++++|+..++++++ +.| +...|..++.+|...|++++|
T Consensus 13 ~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~--l~P~~~~a~~~lg~~~~~lg~~~eA 89 (356)
T PLN03088 13 FVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIE--LDPSLAKAYLRKGTACMKLEEYQTA 89 (356)
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHhCCHHHH
Confidence 34444444444444444421 11233444444444444455555444444444 333 344444444444444555555
Q ss_pred HHHHHHHHHC
Q 002664 841 YTLFEETRRK 850 (895)
Q Consensus 841 ~~~~~~~~~~ 850 (895)
+..|+++++.
T Consensus 90 ~~~~~~al~l 99 (356)
T PLN03088 90 KAALEKGASL 99 (356)
T ss_pred HHHHHHHHHh
Confidence 5554444444
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.046 Score=54.25 Aligned_cols=296 Identities=15% Similarity=0.135 Sum_probs=139.8
Q ss_pred HHHHHHHHHh--cCCHHHHHHHHHHHHHcCCCCCHhhHHHHHH--HHHHcCChhHHHHHHHHHHHCCCCCCHHH--HHHH
Q 002664 509 YTSLIRNFFK--HGRKEDGHKIYKEMVQRGCSPDLMLLNTYMD--CVFKAGETEKGRALFEEIKAQGFVPDVQS--YSIL 582 (895)
Q Consensus 509 ~~~l~~~~~~--~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l 582 (895)
|..|-.+++. .|+-..|.+.-.+..+. +..|..-+..++. .-.-.|+++.|.+-|+.|... |.... ...|
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgL 160 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGL 160 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHH
Confidence 5555444443 34455555544443321 2333333333332 233456777777777766652 22221 1122
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCC-CCCCHHhH--HHHHHHH--H
Q 002664 583 IHGLVKAGFAHETDQLFYAMKKQGCVLDTRAYNTVVDGFCKSGKVNKAYQLLEEMKTKG-HYPTVVTY--GSVIDGL--A 657 (895)
Q Consensus 583 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~--~~l~~~~--~ 657 (895)
.-.-.+.|..+.|..+-+..-... +.-...+...+...|..|+++.|+++++.-.... +.++..-- ..|+.+- .
T Consensus 161 yleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s 239 (531)
T COG3898 161 YLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMS 239 (531)
T ss_pred HHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHH
Confidence 222234566666666665555442 2234555666666666777777777666544331 12222211 1122111 1
Q ss_pred -ccCCHHHHHHHHHHHHHcCCCcCHH-HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 002664 658 -KIDRLDEAYMLFEEAKSKGIELNTV-IYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNAYTWNCLLDALVKAEEISEA 735 (895)
Q Consensus 658 -~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 735 (895)
-..+...|...-.+..+. .|+.. .-.....++.+.|+..++-.+++.+-+....|+. + ++..+.+.|+ .+
T Consensus 240 ~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~i--a--~lY~~ar~gd--ta 311 (531)
T COG3898 240 LLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDI--A--LLYVRARSGD--TA 311 (531)
T ss_pred HhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHH--H--HHHHHhcCCC--cH
Confidence 112344444444444443 23322 1122345566667777777777666664433332 2 2223344444 23
Q ss_pred HHHHHHHHhc-CCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCCHHHHHHHHHHH
Q 002664 736 FVCFQSMKDL-KCTPN-HVTYSIIINGLCRVRKFNKAFVFWQEMQKQGFKPNTITYTTMISGL-AKAGNITEANGLFERF 812 (895)
Q Consensus 736 ~~~~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~~~~A~~~~~~~ 812 (895)
+.-+++.... .++|| ..+...+..+-...|++..|..--+.... ..|....|..|.+.- ...|+-.++...+-+.
T Consensus 312 ~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqa 389 (531)
T COG3898 312 LDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQA 389 (531)
T ss_pred HHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHH
Confidence 3333332221 12333 34444555556666666666655555543 456666666665553 3336666666666666
Q ss_pred HHCCCCC
Q 002664 813 KENGGVP 819 (895)
Q Consensus 813 ~~~~~~p 819 (895)
+.....|
T Consensus 390 v~APrdP 396 (531)
T COG3898 390 VKAPRDP 396 (531)
T ss_pred hcCCCCC
Confidence 6544444
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.0003 Score=66.98 Aligned_cols=93 Identities=20% Similarity=0.203 Sum_probs=41.5
Q ss_pred HHhcCCHhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 002664 307 LCKSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLFERLKQKGCIPSVIAYNSLLTCLGKKGRVTEA 386 (895)
Q Consensus 307 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 386 (895)
+.+.++|.+|+..|.+.++..+. |.+.|-.-..+|++.|.++.|++-.+..+..+.. ...+|..|..+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHHHH
Confidence 33444444444444444444443 4444444444444444444444444444443211 233444444444444444444
Q ss_pred HHHHHHHhcCCCCCH
Q 002664 387 MKIFEAMKKDARPNN 401 (895)
Q Consensus 387 ~~~~~~~~~~~~~~~ 401 (895)
++.|++.....|.+.
T Consensus 169 ~~aykKaLeldP~Ne 183 (304)
T KOG0553|consen 169 IEAYKKALELDPDNE 183 (304)
T ss_pred HHHHHhhhccCCCcH
Confidence 444444444444444
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.80 E-value=4.2e-05 Score=60.55 Aligned_cols=47 Identities=21% Similarity=0.365 Sum_probs=17.7
Q ss_pred CCHhHHHHHHHHHhhCCCC-CCHHhHHHHHHHHHccCCHHHHHHHHHH
Q 002664 311 KRLEEAVAMFEQMDRNREV-PCAYAYNTMIMGYGSVGKFDEAFSLFER 357 (895)
Q Consensus 311 g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 357 (895)
|+++.|+.+++++....+. ++...+..++.+|.+.|++++|..++++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3444444444444433321 1222222334444444444444444433
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00054 Score=71.31 Aligned_cols=99 Identities=16% Similarity=0.008 Sum_probs=50.3
Q ss_pred HHHhcCCHhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 002664 306 VLCKSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLFERLKQKGCIPSVIAYNSLLTCLGKKGRVTE 385 (895)
Q Consensus 306 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 385 (895)
.+...|++++|+++|++++...+. +...|..++.+|...|++++|+..++++++... .+...|..++.+|...|++++
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P-~~~~a~~~lg~~~~~lg~~~e 88 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELDP-SLAKAYLRKGTACMKLEEYQT 88 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHhCCHHH
Confidence 344555555555555555554443 444555555555555555555555555555432 134445555555555555555
Q ss_pred HHHHHHHHhcCCCCCHHHHHH
Q 002664 386 AMKIFEAMKKDARPNNTTYNV 406 (895)
Q Consensus 386 A~~~~~~~~~~~~~~~~~~~~ 406 (895)
|+..|+...+..|.+......
T Consensus 89 A~~~~~~al~l~P~~~~~~~~ 109 (356)
T PLN03088 89 AKAALEKGASLAPGDSRFTKL 109 (356)
T ss_pred HHHHHHHHHHhCCCCHHHHHH
Confidence 555555555544444444333
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00039 Score=56.90 Aligned_cols=16 Identities=31% Similarity=0.399 Sum_probs=5.8
Q ss_pred HHHHhcCCHHHHHHHH
Q 002664 409 DMLCKAGNFEDALKFR 424 (895)
Q Consensus 409 ~~~~~~g~~~~A~~~~ 424 (895)
.++...|++++|...+
T Consensus 76 ~~~~~~~~~~~a~~~~ 91 (100)
T cd00189 76 LAYYKLGKYEEALEAY 91 (100)
T ss_pred HHHHHHHhHHHHHHHH
Confidence 3333333333333333
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00054 Score=63.06 Aligned_cols=93 Identities=16% Similarity=0.120 Sum_probs=47.7
Q ss_pred HhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 002664 333 YAYNTMIMGYGSVGKFDEAFSLFERLKQKGCIP--SVIAYNSLLTCLGKKGRVTEAMKIFEAMKKDARPNNTTYNVLIDM 410 (895)
Q Consensus 333 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 410 (895)
..|..++..+...|++++|...|++.......+ ...++..+..++...|++++|+..+++.....|....++..++.+
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i 115 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVI 115 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHH
Confidence 344455555555555555555555555432211 123455555555566666666666655555445555555555555
Q ss_pred HH-------hcCCHHHHHHHHH
Q 002664 411 LC-------KAGNFEDALKFRD 425 (895)
Q Consensus 411 ~~-------~~g~~~~A~~~~~ 425 (895)
+. ..|++++|...++
T Consensus 116 ~~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 116 CHYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred HHHhhHHHHHcccHHHHHHHHH
Confidence 54 5555554444333
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0066 Score=59.16 Aligned_cols=181 Identities=13% Similarity=0.036 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHh---HHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHH
Q 002664 227 VHLFTTLIRVFAREGRVDDALFLLDEMKNNAFSVDIVL---YNVCIDCFGKVGKVDMAWKFFHEMKAQGVAPDDVTYTSM 303 (895)
Q Consensus 227 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l 303 (895)
.......+..+...|++++|.+.|+++....+.. ... .-.++.++.+.+++++|...++++++..+......|...
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y 110 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY 110 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence 3334444555556666666666666666543211 111 134555666667777777777666665322222222222
Q ss_pred HHHHHh--cC---------------C---HhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhcCC
Q 002664 304 IGVLCK--SK---------------R---LEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLFERLKQKGC 363 (895)
Q Consensus 304 ~~~~~~--~g---------------~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 363 (895)
..+.+. .+ + ..+|+..|+++++.-|. ..-..+|...+..+...
T Consensus 111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~---------------S~ya~~A~~rl~~l~~~-- 173 (243)
T PRK10866 111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPN---------------SQYTTDATKRLVFLKDR-- 173 (243)
T ss_pred HHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcC---------------ChhHHHHHHHHHHHHHH--
Confidence 222221 11 1 12344444444444332 12233333333333221
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 002664 364 IPSVIAYNSLLTCLGKKGRVTEAMKIFEAMKKDARP---NNTTYNVLIDMLCKAGNFEDALKFRDAM 427 (895)
Q Consensus 364 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 427 (895)
=..--..++..|.+.|.+..|+.-++.+.+..|. ...+...++.+|...|..++|..+...+
T Consensus 174 --la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 174 --LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred --HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 0111124556677777777777777777664433 4445666667777777777776665544
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0013 Score=60.76 Aligned_cols=87 Identities=21% Similarity=0.221 Sum_probs=44.0
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCC--HHhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 002664 299 TYTSMIGVLCKSKRLEEAVAMFEQMDRNREVPC--AYAYNTMIMGYGSVGKFDEAFSLFERLKQKGCIPSVIAYNSLLTC 376 (895)
Q Consensus 299 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 376 (895)
.+..++..+...|++++|...|++.+...+.+. ...+..++..+.+.|++++|...+.++.+... .+...+..++.+
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~ 115 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNP-KQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHH
Confidence 445555555566666666666666554433221 24455555555555555555555555555421 133344444444
Q ss_pred HHhcCCHHHH
Q 002664 377 LGKKGRVTEA 386 (895)
Q Consensus 377 ~~~~g~~~~A 386 (895)
+...|+...+
T Consensus 116 ~~~~g~~~~a 125 (172)
T PRK02603 116 YHKRGEKAEE 125 (172)
T ss_pred HHHcCChHhH
Confidence 5444444333
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0015 Score=60.28 Aligned_cols=88 Identities=15% Similarity=0.070 Sum_probs=47.5
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCCHHhHHHHHHH
Q 002664 264 LYNVCIDCFGKVGKVDMAWKFFHEMKAQGVAPD--DVTYTSMIGVLCKSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMG 341 (895)
Q Consensus 264 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 341 (895)
.+..++..+...|++++|...|++..+.+..+. ...+..++..+.+.|++++|+..+++.+...+. +...+..++..
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~ 115 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHH
Confidence 344455555555555555555555554322221 235555666666666666666666666655443 45555555566
Q ss_pred HHccCCHHHHH
Q 002664 342 YGSVGKFDEAF 352 (895)
Q Consensus 342 ~~~~g~~~~A~ 352 (895)
|...|+...+.
T Consensus 116 ~~~~g~~~~a~ 126 (172)
T PRK02603 116 YHKRGEKAEEA 126 (172)
T ss_pred HHHcCChHhHh
Confidence 65555544433
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00063 Score=62.63 Aligned_cols=91 Identities=15% Similarity=0.053 Sum_probs=50.3
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 002664 753 TYSIIINGLCRVRKFNKAFVFWQEMQKQGFKP--NTITYTTMISGLAKAGNITEANGLFERFKENGGVP-DSACYNAMME 829 (895)
Q Consensus 753 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~ 829 (895)
.|..++..+...|++++|+..+++.......| ...+|..+..++...|++++|+..++++++ +.| ....+..++.
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~--~~~~~~~~~~~la~ 114 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE--RNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCcHHHHHHHHH
Confidence 34455555556666666666666665431111 123566666666666666666666666665 344 3444555555
Q ss_pred HHH-------hcCCHHHHHHHHH
Q 002664 830 GLS-------NANRAMDAYTLFE 845 (895)
Q Consensus 830 ~~~-------~~g~~~~A~~~~~ 845 (895)
.+. ..|++++|...++
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHH
Confidence 555 5666664444444
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.006 Score=61.51 Aligned_cols=125 Identities=13% Similarity=0.221 Sum_probs=68.3
Q ss_pred HHHHHHhc-CCHHHHHHHHHHHHhc----CCCCC--HHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-----CH-HH
Q 002664 722 LLDALVKA-EEISEAFVCFQSMKDL----KCTPN--HVTYSIIINGLCRVRKFNKAFVFWQEMQKQGFKP-----NT-IT 788 (895)
Q Consensus 722 l~~~~~~~-g~~~~A~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-----~~-~~ 788 (895)
++..|... |++++|++.|++..+. + .+. ...+..++..+.+.|+|++|+++|++........ +. ..
T Consensus 120 lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~ 198 (282)
T PF14938_consen 120 LAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEY 198 (282)
T ss_dssp HHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHH
Confidence 34455555 6777777777776642 1 111 1334566677888888888888888877642211 11 12
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCC--HHHHHHHHHHHHh--cCCHHHHHHHHHHH
Q 002664 789 YTTMISGLAKAGNITEANGLFERFKEN--GGVPD--SACYNAMMEGLSN--ANRAMDAYTLFEET 847 (895)
Q Consensus 789 ~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~--~~~~~~l~~~~~~--~g~~~~A~~~~~~~ 847 (895)
+...+-++...||...|.+.+++.... ++..+ ......|+.++-. ...+.+|+.-|+.+
T Consensus 199 ~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~ 263 (282)
T PF14938_consen 199 FLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSI 263 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHccc
Confidence 333444566778888888888887652 12112 2334455555533 23455566655554
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.67 E-value=7e-05 Score=47.43 Aligned_cols=33 Identities=42% Similarity=0.748 Sum_probs=23.3
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCC
Q 002664 264 LYNVCIDCFGKVGKVDMAWKFFHEMKAQGVAPD 296 (895)
Q Consensus 264 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 296 (895)
+||.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 566777777777777777777777777776665
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0012 Score=55.34 Aligned_cols=91 Identities=19% Similarity=0.189 Sum_probs=51.5
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC----CHHHHHHHHHH
Q 002664 757 IINGLCRVRKFNKAFVFWQEMQKQGFKPN--TITYTTMISGLAKAGNITEANGLFERFKENGGVP----DSACYNAMMEG 830 (895)
Q Consensus 757 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p----~~~~~~~l~~~ 830 (895)
+.+++-..|+.++|+.+|++..+.|...+ ...+..+...+...|++++|+.++++.... .| +......++.+
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~--~p~~~~~~~l~~f~Al~ 84 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE--FPDDELNAALRVFLALA 84 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHHHHHHHHH
Confidence 44555566666666666666666554433 234555555666666666666666666553 12 22333344455
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 002664 831 LSNANRAMDAYTLFEETRR 849 (895)
Q Consensus 831 ~~~~g~~~~A~~~~~~~~~ 849 (895)
+...|+.++|+.++-..+.
T Consensus 85 L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 85 LYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 6666666666666655544
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.088 Score=53.32 Aligned_cols=80 Identities=9% Similarity=0.179 Sum_probs=53.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 002664 365 PSVIAYNSLLTCLGKKGRVTEAMKIFEAMKKDARPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEAGLFPNVMTVNIMVD 444 (895)
Q Consensus 365 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 444 (895)
.|...|..|+.-+...|..++..++++++....|--+.+|...+.+-....++.....+|.+.+...+ +...|...+.
T Consensus 40 tnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l--~ldLW~lYl~ 117 (660)
T COG5107 40 TNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSL--NLDLWMLYLE 117 (660)
T ss_pred hhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhc--cHhHHHHHHH
Confidence 35667777777777777777777777777777777777777777766667777777777777766533 3444544444
Q ss_pred HH
Q 002664 445 RL 446 (895)
Q Consensus 445 ~~ 446 (895)
-.
T Consensus 118 YI 119 (660)
T COG5107 118 YI 119 (660)
T ss_pred HH
Confidence 33
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0012 Score=63.51 Aligned_cols=116 Identities=6% Similarity=0.022 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHH
Q 002664 732 ISEAFVCFQSMKDLKCTPNHVTYSIIINGLCRVRKFNKAFVFWQEMQKQGFKPNTITYTTMISGLAKAG---NITEANGL 808 (895)
Q Consensus 732 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~ 808 (895)
++....-++.-+..+ +.|...|..|..+|...|+++.|..-|.+..+. ..+++..+..+..++..+. ...++..+
T Consensus 138 ~~~l~a~Le~~L~~n-P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL-~g~n~~~~~g~aeaL~~~a~~~~ta~a~~l 215 (287)
T COG4235 138 MEALIARLETHLQQN-PGDAEGWDLLGRAYMALGRASDALLAYRNALRL-AGDNPEILLGLAEALYYQAGQQMTAKARAL 215 (287)
T ss_pred HHHHHHHHHHHHHhC-CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 444444444444433 456778888888888888888888888888774 2345666777776644332 56678888
Q ss_pred HHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 002664 809 FERFKENGGVP-DSACYNAMMEGLSNANRAMDAYTLFEETRRKG 851 (895)
Q Consensus 809 ~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 851 (895)
+++++. ..| |......|+..++..|++.+|...++.|++..
T Consensus 216 l~~al~--~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 216 LRQALA--LDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHh--cCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 888887 556 67777888888888888888888888888885
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.003 Score=53.05 Aligned_cols=92 Identities=23% Similarity=0.244 Sum_probs=55.7
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC---CHHHHHHHHHHHH
Q 002664 338 MIMGYGSVGKFDEAFSLFERLKQKGCIPS--VIAYNSLLTCLGKKGRVTEAMKIFEAMKKDARP---NNTTYNVLIDMLC 412 (895)
Q Consensus 338 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~ 412 (895)
+..++-..|+.++|+.+|++....|.... ...+..+...+...|++++|..++++.....|. +......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 44455566666666666666666654432 334555666666677777777777666655444 4444445555666
Q ss_pred hcCCHHHHHHHHHHHHH
Q 002664 413 KAGNFEDALKFRDAMKE 429 (895)
Q Consensus 413 ~~g~~~~A~~~~~~~~~ 429 (895)
..|+.++|++.+-....
T Consensus 87 ~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 87 NLGRPKEALEWLLEALA 103 (120)
T ss_pred HCCCHHHHHHHHHHHHH
Confidence 77777777776655443
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0096 Score=56.52 Aligned_cols=171 Identities=14% Similarity=0.093 Sum_probs=94.7
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHH--HHHHHHH
Q 002664 687 LIDGFGKVGRIDEAYLIMEELMQKGLT-P-NAYTWNCLLDALVKAEEISEAFVCFQSMKDLKCTPNHVTYS--IIINGLC 762 (895)
Q Consensus 687 l~~~~~~~g~~~~A~~~~~~~~~~~~~-p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~--~l~~~~~ 762 (895)
.+..+...|++.+|+..|+.+...... | -......++.++.+.|+++.|...+++.++.-.......+. .++.++.
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~ 90 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYY 90 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHH
Confidence 344555667777777777777763211 1 23444556777777777777777777777633111111122 2222211
Q ss_pred hc-----------CCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 002664 763 RV-----------RKFNKAFVFWQEMQKQGFKPNTITYTTMISGLAKAGNITEANGLFERFKENGGVPDSACYNAMMEGL 831 (895)
Q Consensus 763 ~~-----------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 831 (895)
.. +...+|+..|+.++ .-|=...-..+|...+..+.+. =...-..+++.|
T Consensus 91 ~~~~~~~~~~~D~~~~~~A~~~~~~li---------------~~yP~S~y~~~A~~~l~~l~~~----la~~e~~ia~~Y 151 (203)
T PF13525_consen 91 KQIPGILRSDRDQTSTRKAIEEFEELI---------------KRYPNSEYAEEAKKRLAELRNR----LAEHELYIARFY 151 (203)
T ss_dssp HHHHHHH-TT---HHHHHHHHHHHHHH---------------HH-TTSTTHHHHHHHHHHHHHH----HHHHHHHHHHHH
T ss_pred HhCccchhcccChHHHHHHHHHHHHHH---------------HHCcCchHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 11 12233444444444 3333444455555544444331 012233467889
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCC---HhhHHHHHHHHHhcCCHHHHHH
Q 002664 832 SNANRAMDAYTLFEETRRKGFNIH---TKTCVILLDALHKAECLEQAAI 877 (895)
Q Consensus 832 ~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~ 877 (895)
.+.|++..|+..++.+++. +|.. ..+...++.+|.+.|..+.|..
T Consensus 152 ~~~~~y~aA~~r~~~v~~~-yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 152 YKRGKYKAAIIRFQYVIEN-YPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp HCTT-HHHHHHHHHHHHHH-STTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHcccHHHHHHHHHHHHHH-CCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 9999999999999999988 3433 4566789999999999996654
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00012 Score=46.00 Aligned_cols=33 Identities=42% Similarity=0.665 Sum_probs=22.4
Q ss_pred HhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCC
Q 002664 263 VLYNVCIDCFGKVGKVDMAWKFFHEMKAQGVAP 295 (895)
Q Consensus 263 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 295 (895)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 456667777777777777777777776666665
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0035 Score=60.44 Aligned_cols=121 Identities=11% Similarity=0.075 Sum_probs=92.1
Q ss_pred HHHHhhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHhcC
Q 002664 320 FEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLFERLKQKGCIPSVIAYNSLLTCLGKKG---RVTEAMKIFEAMKKD 396 (895)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~ 396 (895)
++.-+..+|. |...|-.|+..|...|+++.|...|....+.. .++...+..+..++.... ...++.++|+++.+.
T Consensus 145 Le~~L~~nP~-d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~ 222 (287)
T COG4235 145 LETHLQQNPG-DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALAL 222 (287)
T ss_pred HHHHHHhCCC-CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc
Confidence 4444555665 88888888888888888888888888888864 346667777777665432 456888899999988
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 002664 397 ARPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEAGLFPNVMTVNIMVD 444 (895)
Q Consensus 397 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 444 (895)
.|.|+.+...|...+...|++.+|...++.|++.. |....+..++.
T Consensus 223 D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l--p~~~~rr~~ie 268 (287)
T COG4235 223 DPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL--PADDPRRSLIE 268 (287)
T ss_pred CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--CCCCchHHHHH
Confidence 89999999999999999999999999999998864 33334444443
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0041 Score=67.72 Aligned_cols=61 Identities=11% Similarity=0.067 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002664 752 VTYSIIINGLCRVRKFNKAFVFWQEMQKQGFKPNTITYTTMISGLAKAGNITEANGLFERFKE 814 (895)
Q Consensus 752 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 814 (895)
..|..+.-.....|++++|...++++.+ +.|+...|..++..+...|+.++|.+.++++..
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~--L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAID--LEMSWLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4444444444445555555555555555 234555555555555555555555555555555
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.039 Score=51.56 Aligned_cols=130 Identities=14% Similarity=0.073 Sum_probs=57.2
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHH-----HHH
Q 002664 231 TTLIRVFAREGRVDDALFLLDEMKNNAFSVDIVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGVAPDDVTYTS-----MIG 305 (895)
Q Consensus 231 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~-----l~~ 305 (895)
+.++..+...|.+.-...++.++.+...+.++..-..+++.-.+.|+.+.|..+|++..+..-..|..+.+. ...
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~ 260 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF 260 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence 344444444455555555555555444344444444555555555555555555554433211112222221 122
Q ss_pred HHHhcCCHhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 002664 306 VLCKSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLFERLKQK 361 (895)
Q Consensus 306 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 361 (895)
.|.-.+++..|...|+++...++. +...-|.-..+..-.|+...|.+.++.|++.
T Consensus 261 i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 261 LHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred heecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 333344455555555544444433 4444444343444444555555555554443
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0055 Score=61.82 Aligned_cols=22 Identities=0% Similarity=0.123 Sum_probs=13.1
Q ss_pred HHHHHhcCChhHHHHHHHHHHH
Q 002664 199 IGALATVRESNLMLNLFHQMQE 220 (895)
Q Consensus 199 ~~~~~~~~~~~~a~~~~~~~~~ 220 (895)
...|...|++++|.+.|.+..+
T Consensus 42 a~~fk~~~~~~~A~~ay~kAa~ 63 (282)
T PF14938_consen 42 ANCFKLAKDWEKAAEAYEKAAD 63 (282)
T ss_dssp HHHHHHTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHhccchhHHHHHHHHH
Confidence 3456666777777777666543
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.031 Score=52.78 Aligned_cols=179 Identities=17% Similarity=0.178 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 002664 682 VIYSSLIDGFGKVGRIDEAYLIMEELMQKG-LTP-NAYTWNCLLDALVKAEEISEAFVCFQSMKDLKCTPNHVTYSIIIN 759 (895)
Q Consensus 682 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 759 (895)
..|+.-+ .-.+.|++++|.+.|+.+.... ..| ...+...++.++.+.++++.|+..+++.+..........|...+.
T Consensus 36 ~LY~~g~-~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Ylk 114 (254)
T COG4105 36 ELYNEGL-TELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLK 114 (254)
T ss_pred HHHHHHH-HHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHH
Confidence 3444333 3345577888888887777632 112 345555677777778888888888887776432222223333333
Q ss_pred HHHhc-------CC---HhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 002664 760 GLCRV-------RK---FNKAFVFWQEMQKQGFKPNTITYTTMISGLAKAGNITEANGLFERFKENGGVPDSACYNAMME 829 (895)
Q Consensus 760 ~~~~~-------g~---~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 829 (895)
+++.- .+ ..+|+.-|++.++. ++.+..+ ..|......+... =...=...++
T Consensus 115 gLs~~~~i~~~~rDq~~~~~A~~~f~~~i~r-yPnS~Ya--------------~dA~~~i~~~~d~----LA~~Em~Iar 175 (254)
T COG4105 115 GLSYFFQIDDVTRDQSAARAAFAAFKELVQR-YPNSRYA--------------PDAKARIVKLNDA----LAGHEMAIAR 175 (254)
T ss_pred HHHHhccCCccccCHHHHHHHHHHHHHHHHH-CCCCcch--------------hhHHHHHHHHHHH----HHHHHHHHHH
Confidence 33311 12 23344444444443 2221111 1111111111110 0011123455
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCC---HhhHHHHHHHHHhcCCHHHHHHHHHH
Q 002664 830 GLSNANRAMDAYTLFEETRRKGFNIH---TKTCVILLDALHKAECLEQAAIVGAV 881 (895)
Q Consensus 830 ~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~ 881 (895)
-|.+.|.+..|..-+++|++. ++.. ...+..+..+|.+.|-.++|.+..+.
T Consensus 176 yY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~v 229 (254)
T COG4105 176 YYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKV 229 (254)
T ss_pred HHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHH
Confidence 677777777777777777776 3332 34455677777777777777764443
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0021 Score=64.48 Aligned_cols=130 Identities=17% Similarity=0.228 Sum_probs=72.9
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCCHHhHHHHHHH-HHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 002664 299 TYTSMIGVLCKSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMG-YGSVGKFDEAFSLFERLKQKGCIPSVIAYNSLLTCL 377 (895)
Q Consensus 299 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 377 (895)
+|..++...-+.+..+.|..+|.++.+.+.. +...|...+.. |...++.+.|.++|+...+. +..+...|...+..+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~-~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRC-TYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS--THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 4555555555556666666666666543221 33344443333 22245555566666666654 334555666666666
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 002664 378 GKKGRVTEAMKIFEAMKKDARPNN---TTYNVLIDMLCKAGNFEDALKFRDAMKEA 430 (895)
Q Consensus 378 ~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 430 (895)
...|+.+.|..+|++.....+++. ..|...+..-.+.|+.+...++.+++.+.
T Consensus 81 ~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 81 IKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 666666666666666665544433 46667777777777777777777666653
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00029 Score=52.46 Aligned_cols=56 Identities=20% Similarity=0.237 Sum_probs=32.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 002664 793 ISGLAKAGNITEANGLFERFKENGGVP-DSACYNAMMEGLSNANRAMDAYTLFEETRRK 850 (895)
Q Consensus 793 ~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 850 (895)
+..+...|++++|++.|+++++ ..| +...+..++.++...|++++|+.+|+++++.
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALK--QDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHC--CSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4455566666666666666665 334 4556666666666666666666666666554
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0063 Score=66.30 Aligned_cols=136 Identities=7% Similarity=-0.040 Sum_probs=90.1
Q ss_pred CCCCHHHHHHHHHHHH--hcC---CHHHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHhc--------CCHhHHHHHHHHH
Q 002664 712 LTPNAYTWNCLLDALV--KAE---EISEAFVCFQSMKDLKCTPNH-VTYSIIINGLCRV--------RKFNKAFVFWQEM 777 (895)
Q Consensus 712 ~~p~~~~~~~l~~~~~--~~g---~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~--------g~~~~A~~~~~~~ 777 (895)
.+.+...|...+.+.. ..+ +...|..+|+++++.. |+. ..|..+..++... .+...+.+...+.
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld--P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE--PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 3345566665555432 222 2556777777777633 443 3344333333222 1223444444443
Q ss_pred HHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 002664 778 QKQ-GFKPNTITYTTMISGLAKAGNITEANGLFERFKENGGVPDSACYNAMMEGLSNANRAMDAYTLFEETRRKG 851 (895)
Q Consensus 778 ~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 851 (895)
... ....+..+|..+.-.+...|++++|...++++++ ..|+...|..++..+...|+.++|...++++...+
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~--L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAID--LEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 332 1334557788887777788999999999999999 66888899999999999999999999999998874
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0014 Score=64.13 Aligned_cols=97 Identities=14% Similarity=0.140 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCC-CHHHHH
Q 002664 752 VTYSIIINGLCRVRKFNKAFVFWQEMQKQGFKPN----TITYTTMISGLAKAGNITEANGLFERFKEN-GGVP-DSACYN 825 (895)
Q Consensus 752 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p-~~~~~~ 825 (895)
..|......+...|++++|+..|+..++. .|+ ..++..++.+|...|++++|...|+++++. ...| .+..+.
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 44555555556668888888888888774 344 356777777888888888888888888763 1112 356666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC
Q 002664 826 AMMEGLSNANRAMDAYTLFEETRRK 850 (895)
Q Consensus 826 ~l~~~~~~~g~~~~A~~~~~~~~~~ 850 (895)
.++..+...|++++|.+.|+++++.
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 7777787888888888888888776
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00018 Score=45.53 Aligned_cols=33 Identities=33% Similarity=0.864 Sum_probs=17.6
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC
Q 002664 753 TYSIIINGLCRVRKFNKAFVFWQEMQKQGFKPN 785 (895)
Q Consensus 753 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 785 (895)
+|++++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 355555555555555555555555555555554
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0035 Score=62.85 Aligned_cols=129 Identities=9% Similarity=0.078 Sum_probs=63.1
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 002664 683 IYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNAYTWNCLLDALVK-AEEISEAFVCFQSMKDLKCTPNHVTYSIIINGL 761 (895)
Q Consensus 683 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 761 (895)
+|..+++...+.+..+.|..+|.++.+.+ ..+..+|...+..-.. .++.+.|..+|+..++. ++.+...|...++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 44555555555555666666666665421 1123333333333222 34444466666665552 234444555555555
Q ss_pred HhcCCHhHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002664 762 CRVRKFNKAFVFWQEMQKQGFKPNT---ITYTTMISGLAKAGNITEANGLFERFKE 814 (895)
Q Consensus 762 ~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 814 (895)
...++.+.|..+|++.... +.++. ..|...+..=.+.|+++...++.+++.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5566666666666666543 22221 3555555555555666666666655555
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0004 Score=52.50 Aligned_cols=63 Identities=17% Similarity=0.158 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHC
Q 002664 786 TITYTTMISGLAKAGNITEANGLFERFKENGGVP-DSACYNAMMEGLSNAN-RAMDAYTLFEETRRK 850 (895)
Q Consensus 786 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~ 850 (895)
..+|..++..+...|++++|+..|+++++ ..| ++..|..++.++...| ++++|++.+++.++.
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~--~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIE--LDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHH--HSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 45566666666666666666666666666 445 4566666666666666 566666666666553
|
... |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0039 Score=54.53 Aligned_cols=89 Identities=11% Similarity=-0.055 Sum_probs=57.5
Q ss_pred HHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 002664 760 GLCRVRKFNKAFVFWQEMQKQGFKPNTITYTTMISGLAKAGNITEANGLFERFKENGGVPDSACYNAMMEGLSNANRAMD 839 (895)
Q Consensus 760 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 839 (895)
-+...|++++|..+|.-+.-.+ .-+..-|..|..++...+++++|+..|..+...+. -|+......+..|...|+.++
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHH
Confidence 3456677777777777666532 22455566666677777777777777776655221 255556667777777777777
Q ss_pred HHHHHHHHHHC
Q 002664 840 AYTLFEETRRK 850 (895)
Q Consensus 840 A~~~~~~~~~~ 850 (895)
|+..|+.++.+
T Consensus 124 A~~~f~~a~~~ 134 (165)
T PRK15331 124 ARQCFELVNER 134 (165)
T ss_pred HHHHHHHHHhC
Confidence 77777777664
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0017 Score=67.46 Aligned_cols=123 Identities=11% Similarity=0.101 Sum_probs=84.7
Q ss_pred CCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC--CCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHH
Q 002664 222 GYEVSVHLFTTLIRVFAREGRVDDALFLLDEMKNNA--FSVDIVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGVAPDDVT 299 (895)
Q Consensus 222 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~ 299 (895)
+.+.+......++..+....+.+++..++-+..... ...-..|..++++.|.+.|..++++.+++.=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 345555666667777767777777777777776541 222234556788888888888888888888777888888888
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHc
Q 002664 300 YTSMIGVLCKSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGS 344 (895)
Q Consensus 300 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 344 (895)
++.|++.+.+.|++..|.++...|...+...+..++..-+.++.+
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 888888888888888888888777665554455555444444433
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00033 Score=52.79 Aligned_cols=52 Identities=19% Similarity=0.216 Sum_probs=33.7
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 002664 797 AKAGNITEANGLFERFKENGGVP-DSACYNAMMEGLSNANRAMDAYTLFEETRRK 850 (895)
Q Consensus 797 ~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 850 (895)
...|++++|++.|+++++ ..| +...+..++.+|.+.|++++|..+++++...
T Consensus 2 l~~~~~~~A~~~~~~~l~--~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQ--RNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHH--HTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 355667777777777666 444 5666666777777777777777777766665
|
... |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.021 Score=54.20 Aligned_cols=63 Identities=10% Similarity=0.047 Sum_probs=31.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCC--CChHhHHHHHHHHHhcCChhhHHHHHHHHHHC
Q 002664 229 LFTTLIRVFAREGRVDDALFLLDEMKNNAFS--VDIVLYNVCIDCFGKVGKVDMAWKFFHEMKAQ 291 (895)
Q Consensus 229 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 291 (895)
.+...+..+...|++.+|...|+.+....+. --......++.++.+.|++++|...++++++.
T Consensus 7 ~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 7 ALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3444444555666666666666665543211 11223334555566666666666666665554
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.24 Score=52.68 Aligned_cols=187 Identities=11% Similarity=0.018 Sum_probs=112.3
Q ss_pred CHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHH
Q 002664 610 DTRAYNTVVDGFCKSGKVNKAYQLLEEMKTKGHYPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNTVIYSSLID 689 (895)
Q Consensus 610 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 689 (895)
+..+|...+....+.|+.+.+.-+++...-- +..-...|-..+.-....|+.+-|..++....+...+..+.+...-..
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence 4567777888888889999998888877632 111223344444444555888888887777766544434443333333
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCCHHHHH---HHHHHHHhcCCCCCHH--HHHHHHH-HHH
Q 002664 690 GFGKVGRIDEAYLIMEELMQKGLTPNAYT-WNCLLDALVKAEEISEAF---VCFQSMKDLKCTPNHV--TYSIIIN-GLC 762 (895)
Q Consensus 690 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~A~---~~~~~~~~~~~~p~~~--~~~~l~~-~~~ 762 (895)
..-..|++..|..+++.+.+.- |+... -..-+....+.|+.+.+. +++.........+... .+.-..+ .+.
T Consensus 375 f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~ 452 (577)
T KOG1258|consen 375 FEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYK 452 (577)
T ss_pred HHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHH
Confidence 3455689999999999988853 54332 222344566778888777 4444433311112111 1111111 133
Q ss_pred hcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 002664 763 RVRKFNKAFVFWQEMQKQGFKPNTITYTTMISGLAKAG 800 (895)
Q Consensus 763 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 800 (895)
-.++.+.|..++.++.+. .+++...|..+++.....+
T Consensus 453 i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 453 IREDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 356788899999988874 5666777888887765554
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00074 Score=50.24 Aligned_cols=58 Identities=26% Similarity=0.410 Sum_probs=43.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 002664 373 LLTCLGKKGRVTEAMKIFEAMKKDARPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEA 430 (895)
Q Consensus 373 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 430 (895)
++..+.+.|++++|++.|+++.+..|.+..++..++.++...|++++|...|+++.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4556777778888888888877777777778888888888888888888888777664
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.12 Score=48.57 Aligned_cols=142 Identities=15% Similarity=0.073 Sum_probs=97.6
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHH-----HHHHH
Q 002664 299 TYTSMIGVLCKSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLFERLKQKGCIPSVI-----AYNSL 373 (895)
Q Consensus 299 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-----~~~~l 373 (895)
..+.++..+.-.|.|.-....+.++.+.+++.+......|++.-.+.||.+.|..+|+...+..-..+.. +....
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 3455666666777777777777777777766677777777777777788888888887665533222322 23333
Q ss_pred HHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHH
Q 002664 374 LTCLGKKGRVTEAMKIFEAMKKDARPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEAGLFPNVMTVNIM 442 (895)
Q Consensus 374 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 442 (895)
...|.-.+++..|...|.++....+.++.+-|.-+-++.-.|+..+|++.++.|++.. |...+-+++
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~--P~~~l~es~ 325 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQD--PRHYLHESV 325 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccC--CccchhhhH
Confidence 3445566778888888888887777888877777777777788888888888888753 444444433
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00059 Score=51.56 Aligned_cols=64 Identities=22% Similarity=0.306 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccC-CHHHHHHHHHHHHhc
Q 002664 297 DVTYTSMIGVLCKSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVG-KFDEAFSLFERLKQK 361 (895)
Q Consensus 297 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~ 361 (895)
..+|..++..+...|++++|+..|++.++.++. +..+|..++.+|...| ++++|++.+++.++.
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 445555556666666666666666666555544 5555555666666665 466666666555543
|
... |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0026 Score=66.12 Aligned_cols=122 Identities=16% Similarity=0.101 Sum_probs=93.5
Q ss_pred CcCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc--CCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHhHH
Q 002664 189 RPAFTAYTTLIGALATVRESNLMLNLFHQMQEL--GYEVSVHLFTTLIRVFAREGRVDDALFLLDEMKNNAFSVDIVLYN 266 (895)
Q Consensus 189 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 266 (895)
+.+......+++.+....+.+.+..++.+.... ....-+.+...+++.|...|..++++.++..=...|+-||..++|
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 445555666666666666777777777776654 233345667789999999999999999999888889999999999
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 002664 267 VCIDCFGKVGKVDMAWKFFHEMKAQGVAPDDVTYTSMIGVLCKS 310 (895)
Q Consensus 267 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~ 310 (895)
.+++.+.+.|++..|.++..+|...+...+..|+..-+.++.+-
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99999999999999999998888776666777776666665554
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.28 Score=52.20 Aligned_cols=114 Identities=15% Similarity=0.180 Sum_probs=55.6
Q ss_pred hHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHH
Q 002664 314 EEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLFERLKQKGCIPSVIAYNSLLTCLG-KKGRVTEAMKIFEA 392 (895)
Q Consensus 314 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~ 392 (895)
+.+...++.++..-|. --.-|......-.+.|..+.+.++|++.+.. ++.+...|......+. ..|+.+...+.|+.
T Consensus 62 ~~~r~~y~~fL~kyPl-~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~ 139 (577)
T KOG1258|consen 62 DALREVYDIFLSKYPL-CYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYLAFLKNNNGDPETLRDLFER 139 (577)
T ss_pred HHHHHHHHHHHhhCcc-HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 4444444444443321 1223333333344555555555555555542 3334444444433333 34555555555555
Q ss_pred HhcCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002664 393 MKKDAR---PNNTTYNVLIDMLCKAGNFEDALKFRDAMKE 429 (895)
Q Consensus 393 ~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 429 (895)
...... .....|...+..-..++++.....++++.++
T Consensus 140 A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRile 179 (577)
T KOG1258|consen 140 AKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILE 179 (577)
T ss_pred HHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHh
Confidence 544222 2334455566666666666666666666665
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00037 Score=43.64 Aligned_cols=32 Identities=28% Similarity=0.587 Sum_probs=14.8
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC
Q 002664 753 TYSIIINGLCRVRKFNKAFVFWQEMQKQGFKP 784 (895)
Q Consensus 753 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 784 (895)
+|+.++.+|.+.|+++.|.++++.|.+.|+.|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 34444444444444444444444444444443
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.004 Score=61.03 Aligned_cols=86 Identities=12% Similarity=0.105 Sum_probs=49.1
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcCCHhHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcC
Q 002664 727 VKAEEISEAFVCFQSMKDLKCTPN----HVTYSIIINGLCRVRKFNKAFVFWQEMQKQ--GFKPNTITYTTMISGLAKAG 800 (895)
Q Consensus 727 ~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~g 800 (895)
.+.|++++|+..|+.+++.. |+ ...+..++.+|...|++++|...|+.+.+. +.......+..++.++...|
T Consensus 154 ~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g 231 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKG 231 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcC
Confidence 44566666666666666533 22 234556666666666666666666666653 11111344444555566666
Q ss_pred CHHHHHHHHHHHHH
Q 002664 801 NITEANGLFERFKE 814 (895)
Q Consensus 801 ~~~~A~~~~~~~~~ 814 (895)
+.++|.+.++++++
T Consensus 232 ~~~~A~~~~~~vi~ 245 (263)
T PRK10803 232 DTAKAKAVYQQVIK 245 (263)
T ss_pred CHHHHHHHHHHHHH
Confidence 66666666666665
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0038 Score=50.09 Aligned_cols=77 Identities=21% Similarity=0.308 Sum_probs=52.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCC-CCChHhHHHHHHHHHhcC--------ChhhHHHHHHHHHHCCCCCCHHHHHHH
Q 002664 233 LIRVFAREGRVDDALFLLDEMKNNAF-SVDIVLYNVCIDCFGKVG--------KVDMAWKFFHEMKAQGVAPDDVTYTSM 303 (895)
Q Consensus 233 l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--------~~~~A~~~~~~~~~~g~~p~~~~~~~l 303 (895)
-+..+...+++.....+|+.+++.|+ -|++.+|+.++...++.. ++-+.+.+++.|+..+++|+..+|+.+
T Consensus 31 ~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYniv 110 (120)
T PF08579_consen 31 NINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIV 110 (120)
T ss_pred HHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHH
Confidence 34445555777777777777777776 677777777777666442 234566777778777788888888877
Q ss_pred HHHHHh
Q 002664 304 IGVLCK 309 (895)
Q Consensus 304 ~~~~~~ 309 (895)
+..+.+
T Consensus 111 l~~Llk 116 (120)
T PF08579_consen 111 LGSLLK 116 (120)
T ss_pred HHHHHH
Confidence 776654
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0008 Score=50.66 Aligned_cols=52 Identities=19% Similarity=0.331 Sum_probs=32.1
Q ss_pred hcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 002664 379 KKGRVTEAMKIFEAMKKDARPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEA 430 (895)
Q Consensus 379 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 430 (895)
+.|++++|+++|+++....|.+..++..++.+|.+.|++++|..+++++...
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4566666666666666666666666666666666666666666666666554
|
... |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.036 Score=54.34 Aligned_cols=165 Identities=13% Similarity=0.159 Sum_probs=88.9
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHH-CCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-----CHHH
Q 002664 683 IYSSLIDGFGKVGRIDEAYLIMEELMQ-KGLTP---NAYTWNCLLDALVKAEEISEAFVCFQSMKDLKCTP-----NHVT 753 (895)
Q Consensus 683 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-----~~~~ 753 (895)
.|..+.+++.+..++.+++.+-..-.. .|..| ......++..++.-.+.++++++.|+...+..... ....
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 344455555555555555555444333 12222 11223345556666666777777777666521111 1245
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHC----CCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCC-
Q 002664 754 YSIIINGLCRVRKFNKAFVFWQEMQKQ----GFKPNT-----ITYTTMISGLAKAGNITEANGLFERFKE----NGGVP- 819 (895)
Q Consensus 754 ~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p- 819 (895)
|-.|...|....++++|..+..++.+. ++..-. .+...+..++...|.+..|.+.-++..+ .|..|
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~ 244 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRAL 244 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHH
Confidence 666777777777777777666655432 211111 1233444456667777777666665533 34433
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 002664 820 DSACYNAMMEGLSNANRAMDAYTLFEET 847 (895)
Q Consensus 820 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 847 (895)
...+...+++.|...|+.+.|..-|+.+
T Consensus 245 ~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 245 QARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 3455566777777777777777777654
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.12 Score=52.30 Aligned_cols=108 Identities=19% Similarity=0.174 Sum_probs=70.5
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHc
Q 002664 265 YNVCIDCFGKVGKVDMAWKFFHEMKAQGVAPDDVTYTSMIGVLCKSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGS 344 (895)
Q Consensus 265 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 344 (895)
.+..+.-+...|....|.++-.+.. .|+...|...+.+++..++|++-.++... + -++.-|..++..+.+
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s--k----KsPIGyepFv~~~~~ 249 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS--K----KSPIGYEPFVEACLK 249 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC--C----CCCCChHHHHHHHHH
Confidence 3344555566777777777765553 35777777888888888888766654332 1 134667777777778
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 002664 345 VGKFDEAFSLFERLKQKGCIPSVIAYNSLLTCLGKKGRVTEAMKIFEA 392 (895)
Q Consensus 345 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 392 (895)
.|+..+|..+..++ .+..-+..|.+.|++.+|.+.--+
T Consensus 250 ~~~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 250 YGNKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred CCCHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHHHH
Confidence 88888877777661 124456667777887777766443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.32 Score=49.50 Aligned_cols=136 Identities=18% Similarity=0.283 Sum_probs=96.2
Q ss_pred CHHhHHHHHHHHHccCCHHHHHHHHHHHHHcC-CCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHH-HHH
Q 002664 645 TVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKG-IELNTVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNAYTW-NCL 722 (895)
Q Consensus 645 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~-~~l 722 (895)
-..+|...++...+..-++.|..+|-++.+.+ ..+++.++++++..++ .|+..-|..+|+--+.. .||...| +-.
T Consensus 396 ~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~ky 472 (660)
T COG5107 396 LTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKY 472 (660)
T ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHH
Confidence 34566777777777778888999999888887 5667778888887666 47888888888876663 2343333 334
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCH
Q 002664 723 LDALVKAEEISEAFVCFQSMKDLKCTPN--HVTYSIIINGLCRVRKFNKAFVFWQEMQKQGFKPNT 786 (895)
Q Consensus 723 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 786 (895)
+.-+...++-..|..+|+..... +..+ ...|..+++--..-|+...+..+=++|.+ ..|-.
T Consensus 473 l~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQe 535 (660)
T COG5107 473 LLFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQE 535 (660)
T ss_pred HHHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcH
Confidence 55566778888888888855541 1222 35788888877888888888888888776 34444
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0005 Score=41.89 Aligned_cols=29 Identities=34% Similarity=0.646 Sum_probs=15.5
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHHCC
Q 002664 264 LYNVCIDCFGKVGKVDMAWKFFHEMKAQG 292 (895)
Q Consensus 264 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 292 (895)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555443
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0088 Score=48.06 Aligned_cols=76 Identities=21% Similarity=0.374 Sum_probs=45.6
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHhcCCCCCHHHHHH
Q 002664 686 SLIDGFGKVGRIDEAYLIMEELMQKGL-TPNAYTWNCLLDALVKAE--------EISEAFVCFQSMKDLKCTPNHVTYSI 756 (895)
Q Consensus 686 ~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g--------~~~~A~~~~~~~~~~~~~p~~~~~~~ 756 (895)
..|..+...+++.....+|+.+.+.|+ .|+..+|+.++.+.++.. .+-+.+.+|+.|+..+++|+..+|+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 344455555777777777777777777 677777777776655432 12344455555555555555555555
Q ss_pred HHHHH
Q 002664 757 IINGL 761 (895)
Q Consensus 757 l~~~~ 761 (895)
++..+
T Consensus 110 vl~~L 114 (120)
T PF08579_consen 110 VLGSL 114 (120)
T ss_pred HHHHH
Confidence 55444
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.11 Score=54.99 Aligned_cols=102 Identities=18% Similarity=0.199 Sum_probs=55.6
Q ss_pred HhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 002664 333 YAYNTMIMGYGSVGKFDEAFSLFERLKQKGCIPSVIAYNSLLTCLGKKGRVTEAMKIFEAMKKDARPNNTTYNVLIDMLC 412 (895)
Q Consensus 333 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 412 (895)
..+.+=+..|...|.+++|.++-- .| ....-|..|.......=+++-|.+.|.+...
T Consensus 557 vp~~~~m~q~Ieag~f~ea~~iac----lg--Vv~~DW~~LA~~ALeAL~f~~ARkAY~rVRd----------------- 613 (1081)
T KOG1538|consen 557 VPQSAPMYQYIERGLFKEAYQIAC----LG--VTDTDWRELAMEALEALDFETARKAYIRVRD----------------- 613 (1081)
T ss_pred ccccccchhhhhccchhhhhcccc----cc--eecchHHHHHHHHHhhhhhHHHHHHHHHHhc-----------------
Confidence 334444445666677666654321 11 1222344555444444455555555544432
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHh
Q 002664 413 KAGNFEDALKFRDAMKEAGLFPNVMTVNIMVDRLCKAQKLDEAFSIFEGM 462 (895)
Q Consensus 413 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 462 (895)
-.+-+...-++++.++|-.|+... +...+.-.|++.+|.++|.+-
T Consensus 614 --l~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~ 658 (1081)
T KOG1538|consen 614 --LRYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKRS 658 (1081)
T ss_pred --cHHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHHc
Confidence 233344555677777777676543 445566778888888887643
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0033 Score=48.07 Aligned_cols=56 Identities=20% Similarity=0.100 Sum_probs=39.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 002664 794 SGLAKAGNITEANGLFERFKENGGVP-DSACYNAMMEGLSNANRAMDAYTLFEETRRKG 851 (895)
Q Consensus 794 ~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 851 (895)
..|.+.+++++|++.++++++ ..| ++..+...+.++.+.|++++|...++++++.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALE--LDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHH--hCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 346677777777777777777 455 56667777777777777777777777777663
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.00086 Score=40.82 Aligned_cols=29 Identities=38% Similarity=1.006 Sum_probs=14.6
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHhcC
Q 002664 334 AYNTMIMGYGSVGKFDEAFSLFERLKQKG 362 (895)
Q Consensus 334 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 362 (895)
+|+.++.+|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 44555555555555555555555554443
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.47 Score=46.73 Aligned_cols=168 Identities=20% Similarity=0.164 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHH
Q 002664 227 VHLFTTLIRVFAREGRVDDALFLLDEMKNN-AFSVDIVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGVAPDDVTYTSMIG 305 (895)
Q Consensus 227 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~ 305 (895)
..........+...+.+..+...+...... ........+......+...+++..+.+.+.........+ .........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHH
Confidence 344455555555666666666665555431 112333444444555555555555665555555432222 111111222
Q ss_pred -HHHhcCCHhHHHHHHHHHhhCCC--CCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 002664 306 -VLCKSKRLEEAVAMFEQMDRNRE--VPCAYAYNTMIMGYGSVGKFDEAFSLFERLKQKGCIPSVIAYNSLLTCLGKKGR 382 (895)
Q Consensus 306 -~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 382 (895)
.+...|+++.|...+.+.....+ ......+......+...++.+.+...+.+............+..+...+...++
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 138 GALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHccc
Confidence 45555555555555555533221 012222222222333444444444444444443211012333334444444444
Q ss_pred HHHHHHHHHHHhc
Q 002664 383 VTEAMKIFEAMKK 395 (895)
Q Consensus 383 ~~~A~~~~~~~~~ 395 (895)
++.|...+.....
T Consensus 218 ~~~a~~~~~~~~~ 230 (291)
T COG0457 218 YEEALEYYEKALE 230 (291)
T ss_pred HHHHHHHHHHHHh
Confidence 4444444444433
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.025 Score=49.62 Aligned_cols=86 Identities=13% Similarity=0.006 Sum_probs=39.3
Q ss_pred HccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 002664 343 GSVGKFDEAFSLFERLKQKGCIPSVIAYNSLLTCLGKKGRVTEAMKIFEAMKKDARPNNTTYNVLIDMLCKAGNFEDALK 422 (895)
Q Consensus 343 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 422 (895)
...|++++|..+|.-+...++. +...+..|..++...+++++|+..|.......+.|+..+...+.++...|+.+.|..
T Consensus 48 y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~ 126 (165)
T PRK15331 48 YNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQ 126 (165)
T ss_pred HHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHH
Confidence 3444444444444444443321 333344444444444444455444444433333444444445555555555555555
Q ss_pred HHHHHHH
Q 002664 423 FRDAMKE 429 (895)
Q Consensus 423 ~~~~~~~ 429 (895)
.|....+
T Consensus 127 ~f~~a~~ 133 (165)
T PRK15331 127 CFELVNE 133 (165)
T ss_pred HHHHHHh
Confidence 5554444
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.019 Score=54.74 Aligned_cols=102 Identities=13% Similarity=0.199 Sum_probs=68.6
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCC-CHHHHHHH
Q 002664 753 TYSIIINGLCRVRKFNKAFVFWQEMQKQGFKP---NTITYTTMISGLAKAGNITEANGLFERFKEN-GGVP-DSACYNAM 827 (895)
Q Consensus 753 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p-~~~~~~~l 827 (895)
.|+.-+..+ ..|+|.+|...|...++. ++. ....+..|+.++...|++++|...|..+.+. +-.| -+..+..|
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~-YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKK-YPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHc-CCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 466555443 556688888888777765 121 1345666777788888888888888777763 2223 36777777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHh
Q 002664 828 MEGLSNANRAMDAYTLFEETRRKGFNIHTK 857 (895)
Q Consensus 828 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 857 (895)
+....+.|+.++|...|+++.+. +|....
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~-YP~t~a 250 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKR-YPGTDA 250 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHH-CCCCHH
Confidence 77888888888888888887776 454443
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.026 Score=54.57 Aligned_cols=188 Identities=10% Similarity=0.032 Sum_probs=127.7
Q ss_pred HccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHH--HHH--HHHHHHHhcCCH
Q 002664 692 GKVGRIDEAYLIMEELMQKGLTPNAYTWNCLLDALVKAEEISEAFVCFQSMKDLKCTPNHV--TYS--IIINGLCRVRKF 767 (895)
Q Consensus 692 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~--~~~--~l~~~~~~~g~~ 767 (895)
...|+..+|...++++++. .+.|..+++-.-.+|.-.|+...-...+++++-. ..++.. +|- .+.-++.+.|-+
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 3468899999999999985 5558888888888999999999999999998852 234442 222 455667789999
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 002664 768 NKAFVFWQEMQKQGFKPNTITYTTMISGLAKAGNITEANGLFERFKEN---GGVPDSACYNAMMEGLSNANRAMDAYTLF 844 (895)
Q Consensus 768 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 844 (895)
++|.+.-++..+.+ +.|.-..-++...+...|+..++.+...+-... +-..-...|-..+-.+...+.++.|+++|
T Consensus 192 ~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 192 DDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 99999999988753 335555566777788899999999887665432 11112344556666778889999999999
Q ss_pred HHHHHCCCCC-CHhh---HHHHHHHHHhcCCHHHHHHHHHHH
Q 002664 845 EETRRKGFNI-HTKT---CVILLDALHKAECLEQAAIVGAVL 882 (895)
Q Consensus 845 ~~~~~~~~~~-~~~~---~~~l~~~~~~~g~~~~A~~~~~~l 882 (895)
+.-+-+.... |... +..+--+......|.+-..+.+-+
T Consensus 271 D~ei~k~l~k~Da~a~~~~ld~dgv~~~~d~~~kld~la~~l 312 (491)
T KOG2610|consen 271 DREIWKRLEKDDAVARDVYLDLDGVDLRSDLWRKLDKLADSL 312 (491)
T ss_pred HHHHHHHhhccchhhhhhhhhhhhHHhHHHHHHHHHhhhhhh
Confidence 8644443333 3322 122344445555555555444433
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.98 Score=50.12 Aligned_cols=50 Identities=14% Similarity=0.249 Sum_probs=21.6
Q ss_pred HHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHH
Q 002664 270 DCFGKVGKVDMAWKFFHEMKAQGVAPDDVTYTSMIGVLCKSKRLEEAVAMF 320 (895)
Q Consensus 270 ~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 320 (895)
.-|....+..+-..+++.+.+.|+. +...-..|+.+|.+.++.++-.++.
T Consensus 405 ~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI 454 (933)
T KOG2114|consen 405 KKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFI 454 (933)
T ss_pred HHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHH
Confidence 3333444444444444444444433 3333334444444444444444333
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.029 Score=53.57 Aligned_cols=89 Identities=18% Similarity=0.199 Sum_probs=45.9
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCC---CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhc
Q 002664 725 ALVKAEEISEAFVCFQSMKDLKCTP---NHVTYSIIINGLCRVRKFNKAFVFWQEMQKQ-GFKP-NTITYTTMISGLAKA 799 (895)
Q Consensus 725 ~~~~~g~~~~A~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p-~~~~~~~l~~~~~~~ 799 (895)
.+.+.|++..|...|...++.. +. ....+.+|+.++...|++++|..+|..+.+. +-.| -+..+--|+.+..+.
T Consensus 150 ~~~ksgdy~~A~~~F~~fi~~Y-P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l 228 (262)
T COG1729 150 DLYKSGDYAEAEQAFQAFIKKY-PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRL 228 (262)
T ss_pred HHHHcCCHHHHHHHHHHHHHcC-CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHh
Confidence 3445555666666666655522 11 1133445555666666666666666555543 1111 134555555555556
Q ss_pred CCHHHHHHHHHHHHH
Q 002664 800 GNITEANGLFERFKE 814 (895)
Q Consensus 800 g~~~~A~~~~~~~~~ 814 (895)
|+.++|...++++.+
T Consensus 229 ~~~d~A~atl~qv~k 243 (262)
T COG1729 229 GNTDEACATLQQVIK 243 (262)
T ss_pred cCHHHHHHHHHHHHH
Confidence 666666666666555
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.021 Score=52.24 Aligned_cols=81 Identities=25% Similarity=0.458 Sum_probs=43.7
Q ss_pred CHHHHHHHHHHHHh-----cCChhHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCC-----------------hhhHHH
Q 002664 226 SVHLFTTLIRVFAR-----EGRVDDALFLLDEMKNNAFSVDIVLYNVCIDCFGKVGK-----------------VDMAWK 283 (895)
Q Consensus 226 ~~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-----------------~~~A~~ 283 (895)
+..+|..++..+.+ .|-.+-....+..|.+.|+..|..+|+.|++++=+ |+ .+-|++
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fvp~n~fQ~~F~hyp~Qq~c~i~ 124 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFVPRNFFQAEFMHYPRQQECAID 124 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcccccHHHHHhccCcHHHHHHHH
Confidence 44555555555543 34455555556666666666666666666666543 22 233445
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHH
Q 002664 284 FFHEMKAQGVAPDDVTYTSMIGVL 307 (895)
Q Consensus 284 ~~~~~~~~g~~p~~~~~~~l~~~~ 307 (895)
++++|...|+-||..++..++..+
T Consensus 125 lL~qME~~gV~Pd~Et~~~ll~iF 148 (228)
T PF06239_consen 125 LLEQMENNGVMPDKETEQMLLNIF 148 (228)
T ss_pred HHHHHHHcCCCCcHHHHHHHHHHh
Confidence 555555555555555555555544
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.32 Score=49.76 Aligned_cols=31 Identities=16% Similarity=-0.012 Sum_probs=23.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 002664 820 DSACYNAMMEGLSNANRAMDAYTLFEETRRK 850 (895)
Q Consensus 820 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 850 (895)
+...+..++.+..-.|++++|...+++|.+.
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 4555567777788888888888888888766
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.035 Score=55.88 Aligned_cols=96 Identities=9% Similarity=0.065 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHH
Q 002664 752 VTYSIIINGLCRVRKFNKAFVFWQEMQKQGFKPNTITYTTMISGLAKAGNITEANGLFERFKENGGVP-DSACYNAMMEG 830 (895)
Q Consensus 752 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~ 830 (895)
..++.+.-+|.+.+++.+|++..++.++.. ++|.....--+.++...|+++.|+..|+++++ +.| |..+-..|+..
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k--~~P~Nka~~~el~~l 334 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALK--LEPSNKAARAELIKL 334 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHH--hCCCcHHHHHHHHHH
Confidence 345667778888888888888888888752 45666777778888888888999988888888 777 55556666666
Q ss_pred HHhcCCHH-HHHHHHHHHHHC
Q 002664 831 LSNANRAM-DAYTLFEETRRK 850 (895)
Q Consensus 831 ~~~~g~~~-~A~~~~~~~~~~ 850 (895)
-.+..+.. +..++|..|..+
T Consensus 335 ~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 335 KQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 55554443 346788888766
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.63 Score=45.77 Aligned_cols=223 Identities=19% Similarity=0.120 Sum_probs=142.8
Q ss_pred cCChHHHHHHHHHHHHCCCCC-CHHhHHHHHHHHHccCCHHHHHHHHHHHHHc-CCCcCHHHHHHHHHHHHccCCHHHHH
Q 002664 624 SGKVNKAYQLLEEMKTKGHYP-TVVTYGSVIDGLAKIDRLDEAYMLFEEAKSK-GIELNTVIYSSLIDGFGKVGRIDEAY 701 (895)
Q Consensus 624 ~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~ 701 (895)
.+....+...+.......... ....+......+...+.+..+...+...... ........+......+...+++..+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 355666666666666553221 2455666667777788888888877777652 22445556666677777777788888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 002664 702 LIMEELMQKGLTPNAYTWNCLLD-ALVKAEEISEAFVCFQSMKDLKC--TPNHVTYSIIINGLCRVRKFNKAFVFWQEMQ 778 (895)
Q Consensus 702 ~~~~~~~~~~~~p~~~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 778 (895)
..+.........+ ......... .+...|+++.|...+.+...... ......+......+...+++++|...+.++.
T Consensus 116 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 116 ELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 8888877743222 122222333 67778888888888888765221 0122334444444666778888888888877
Q ss_pred HCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 002664 779 KQGFKP-NTITYTTMISGLAKAGNITEANGLFERFKENGGVPD-SACYNAMMEGLSNANRAMDAYTLFEETRRK 850 (895)
Q Consensus 779 ~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 850 (895)
.. ... ....+..+...+...++++.|...+..... ..|+ ...+..+...+...|+.+++...+++....
T Consensus 195 ~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 195 KL-NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALE--LDPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred hh-CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHh--hCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 64 222 356677777777777888888888888877 4443 455566666666666788888887777766
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0078 Score=45.98 Aligned_cols=56 Identities=16% Similarity=0.154 Sum_probs=36.9
Q ss_pred HHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 002664 375 TCLGKKGRVTEAMKIFEAMKKDARPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEA 430 (895)
Q Consensus 375 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 430 (895)
..|.+.+++++|.++++.+....|.++..+...+.++...|++++|.+.+++..+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 34556666666666666666666666666666666666666666666666666654
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.26 Score=45.87 Aligned_cols=207 Identities=14% Similarity=0.140 Sum_probs=107.2
Q ss_pred HHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHH
Q 002664 611 TRAYNTVVDGFCKSGKVNKAYQLLEEMKTKGHYPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNTVIYSSLIDG 690 (895)
Q Consensus 611 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 690 (895)
...|.....+|....++++|...+.+..+- ...+...|. ..+.++.|.-+.+++.+. +--...|+.....
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-------AAKayEqaamLake~~kl--sEvvdl~eKAs~l 100 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-------AAKAYEQAAMLAKELSKL--SEVVDLYEKASEL 100 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-------HHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHH
Confidence 345555666777777777777776666532 111221111 122345555555555443 1223355555666
Q ss_pred HHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--CH---HHHHHHHHHHHhcC
Q 002664 691 FGKVGRIDEAYLIMEELMQKGLTPNAYTWNCLLDALVKAEEISEAFVCFQSMKDLKCTP--NH---VTYSIIINGLCRVR 765 (895)
Q Consensus 691 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~---~~~~~l~~~~~~~g 765 (895)
|...|.++-|-..+++.-+ ..+..++++|+++|++....-... +. .-|.....++.+..
T Consensus 101 Y~E~GspdtAAmaleKAak----------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~ 164 (308)
T KOG1585|consen 101 YVECGSPDTAAMALEKAAK----------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLE 164 (308)
T ss_pred HHHhCCcchHHHHHHHHHH----------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhH
Confidence 6677766666666655544 123445666666666655311111 11 22334455666777
Q ss_pred CHhHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CC-CHHHHHHHHHHHHhcCCH
Q 002664 766 KFNKAFVFWQEMQKQ----GFKPNT-ITYTTMISGLAKAGNITEANGLFERFKENGG--VP-DSACYNAMMEGLSNANRA 837 (895)
Q Consensus 766 ~~~~A~~~~~~~~~~----~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~p-~~~~~~~l~~~~~~~g~~ 837 (895)
++++|-..+.+-... .-.|+. ..+...|-.+.-..++..|.+.++...+.+- .| +..+...|+.+| ..|+.
T Consensus 165 kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~ 243 (308)
T KOG1585|consen 165 KFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDI 243 (308)
T ss_pred HhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCH
Confidence 777776666554321 111222 2344555555666677777777777554321 12 445555665544 44677
Q ss_pred HHHHHHH
Q 002664 838 MDAYTLF 844 (895)
Q Consensus 838 ~~A~~~~ 844 (895)
+++-+++
T Consensus 244 E~~~kvl 250 (308)
T KOG1585|consen 244 EEIKKVL 250 (308)
T ss_pred HHHHHHH
Confidence 6665443
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.19 Score=53.28 Aligned_cols=53 Identities=19% Similarity=0.224 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002664 369 AYNSLLTCLGKKGRVTEAMKIFEAMKKDARPNNTTYNVLIDMLCKAGNFEDALKFRDAMKE 429 (895)
Q Consensus 369 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 429 (895)
+...+..-+.+...+..|-++|.+|-. ...+++.....++|.+|..+.++..+
T Consensus 749 ~l~~~a~ylk~l~~~gLAaeIF~k~gD--------~ksiVqlHve~~~W~eAFalAe~hPe 801 (1081)
T KOG1538|consen 749 PLLLCATYLKKLDSPGLAAEIFLKMGD--------LKSLVQLHVETQRWDEAFALAEKHPE 801 (1081)
T ss_pred HHHHHHHHHhhccccchHHHHHHHhcc--------HHHHhhheeecccchHhHhhhhhCcc
Confidence 344444444455555666666665543 33455566666666666666655544
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.032 Score=56.15 Aligned_cols=138 Identities=12% Similarity=-0.053 Sum_probs=98.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 002664 721 CLLDALVKAEEISEAFVCFQSMKDLKCTPNHVTYSIIINGLCRVRKFNKAFVFWQEMQKQGFKPNTITYTTMISGLAKAG 800 (895)
Q Consensus 721 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 800 (895)
.-++.|.+.|++..|...|++++..- . |.+.-+.++..... ..-..++..|..++.+.+
T Consensus 213 e~Gn~~fK~gk~~~A~~~Yerav~~l--~-----------~~~~~~~ee~~~~~--------~~k~~~~lNlA~c~lKl~ 271 (397)
T KOG0543|consen 213 ERGNVLFKEGKFKLAKKRYERAVSFL--E-----------YRRSFDEEEQKKAE--------ALKLACHLNLAACYLKLK 271 (397)
T ss_pred HhhhHHHhhchHHHHHHHHHHHHHHh--h-----------ccccCCHHHHHHHH--------HHHHHHhhHHHHHHHhhh
Confidence 34567778888888888887766510 0 11111112211111 112346788888999999
Q ss_pred CHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHH-HHH
Q 002664 801 NITEANGLFERFKENGGVP-DSACYNAMMEGLSNANRAMDAYTLFEETRRKGFNIHTKTCVILLDALHKAECLEQA-AIV 878 (895)
Q Consensus 801 ~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~ 878 (895)
++.+|++..++.++ ..| |......-+.++...|+++.|+..|+++++.. |.|..+...|+.+-.+..+.++. .++
T Consensus 272 ~~~~Ai~~c~kvLe--~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~-P~Nka~~~el~~l~~k~~~~~~kekk~ 348 (397)
T KOG0543|consen 272 EYKEAIESCNKVLE--LDPNNVKALYRRGQALLALGEYDLARDDFQKALKLE-PSNKAARAELIKLKQKIREYEEKEKKM 348 (397)
T ss_pred hHHHHHHHHHHHHh--cCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999 555 88899999999999999999999999999984 77777777888887777666665 333
Q ss_pred HHHH
Q 002664 879 GAVL 882 (895)
Q Consensus 879 ~~~l 882 (895)
...|
T Consensus 349 y~~m 352 (397)
T KOG0543|consen 349 YANM 352 (397)
T ss_pred HHHH
Confidence 4433
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.0053 Score=47.65 Aligned_cols=62 Identities=18% Similarity=0.249 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002664 787 ITYTTMISGLAKAGNITEANGLFERFKEN----GGV-PD-SACYNAMMEGLSNANRAMDAYTLFEETR 848 (895)
Q Consensus 787 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~-p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 848 (895)
.+++.+...|...|++++|+..+++.++. |.. |+ ..++..++.++...|++++|++++++.+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34555555566666666666666655432 100 11 3345555555555556665655555544
|
... |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.005 Score=47.82 Aligned_cols=61 Identities=10% Similarity=0.217 Sum_probs=26.1
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHC--CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002664 753 TYSIIINGLCRVRKFNKAFVFWQEMQKQ--GFKPN----TITYTTMISGLAKAGNITEANGLFERFK 813 (895)
Q Consensus 753 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 813 (895)
+|+.+..+|...|++++|++.+++..+. ...++ ..++..++.++...|++++|++++++.+
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444444444555555555554444422 01111 2234444444445555555555544443
|
... |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.63 E-value=1.5 Score=48.13 Aligned_cols=108 Identities=16% Similarity=0.189 Sum_probs=78.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 002664 719 WNCLLDALVKAEEISEAFVCFQSMKDLKCTPNHVTYSIIINGLCRVRKFNKAFVFWQEMQKQGFKPNTITYTTMISGLAK 798 (895)
Q Consensus 719 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 798 (895)
.+--+.-+...|+..+|.++-.+.. -||..-|..-+.++...+++++-.++-+.+.. +.-|.-.+.+|.+
T Consensus 687 l~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskks------PIGy~PFVe~c~~ 756 (829)
T KOG2280|consen 687 LHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKKS------PIGYLPFVEACLK 756 (829)
T ss_pred HHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC------CCCchhHHHHHHh
Confidence 3444555677888889888877765 37777788888889999999888777666542 2334457778889
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 002664 799 AGNITEANGLFERFKENGGVPDSACYNAMMEGLSNANRAMDAYTLFE 845 (895)
Q Consensus 799 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 845 (895)
.|+.++|.+++.+.-. .. ....+|.+.|++.+|.+..-
T Consensus 757 ~~n~~EA~KYiprv~~-----l~----ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 757 QGNKDEAKKYIPRVGG-----LQ----EKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred cccHHHHhhhhhccCC-----hH----HHHHHHHHhccHHHHHHHHH
Confidence 9999999888766532 11 56778888899988887643
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.1 Score=56.56 Aligned_cols=121 Identities=17% Similarity=0.052 Sum_probs=62.4
Q ss_pred CCHhHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHHCCC-CC--CHHHHHHHHHHHHhcCCHHHH
Q 002664 765 RKFNKAFVFWQEMQKQGFKPNTITYTT-MISGLAKAGNITEANGLFERFKENGG-VP--DSACYNAMMEGLSNANRAMDA 840 (895)
Q Consensus 765 g~~~~A~~~~~~~~~~~~~p~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~-~p--~~~~~~~l~~~~~~~g~~~~A 840 (895)
...+.|.++++.+.+. -|+...|.. -.+.+...|++++|++.|+++..... -| ...++..+++.+.-.++|++|
T Consensus 247 ~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A 324 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEA 324 (468)
T ss_pred CCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHH
Confidence 3455566666666542 344433322 23345556666666666665543110 11 234455666666666666666
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCH-------HHHHHHHHHHHHHHH
Q 002664 841 YTLFEETRRKGFNIHTKTCVILLDALHKAECL-------EQAAIVGAVLRETAK 887 (895)
Q Consensus 841 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-------~~A~~~~~~l~~~~~ 887 (895)
...+..+.+...-......+..+-++...|+. ++|.....++.+...
T Consensus 325 ~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~ 378 (468)
T PF10300_consen 325 AEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQ 378 (468)
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHh
Confidence 66666666553222233333455555556666 555555555555444
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.05 Score=49.92 Aligned_cols=105 Identities=22% Similarity=0.394 Sum_probs=72.8
Q ss_pred CCChHhHHHHHHHHHh-----cCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCCHH
Q 002664 259 SVDIVLYNVCIDCFGK-----VGKVDMAWKFFHEMKAQGVAPDDVTYTSMIGVLCKSKRLEEAVAMFEQMDRNREVPCAY 333 (895)
Q Consensus 259 ~~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 333 (895)
..+-.+|..++..|.+ .|.++-....+..|.+.|+.-|..+|+.|++++=+ |.+- |..
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv---------------p~n- 106 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV---------------PRN- 106 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc---------------ccc-
Confidence 4567778888887764 47888888899999999999999999999998754 3322 111
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 002664 334 AYNTMIMGYGSVGKFDEAFSLFERLKQKGCIPSVIAYNSLLTCLGKKGR 382 (895)
Q Consensus 334 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 382 (895)
.+.++-. -.-.+.+-|++++++|...|+-||..++..+++.+.+.+.
T Consensus 107 ~fQ~~F~--hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 107 FFQAEFM--HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHhc--cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 1111111 1223456677888888888888888888888887766554
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.12 Score=46.02 Aligned_cols=69 Identities=28% Similarity=0.422 Sum_probs=37.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHhh
Q 002664 788 TYTTMISGLAKAGNITEANGLFERFKENGGVP-DSACYNAMMEGLSNANRAMDAYTLFEETRR-----KGFNIHTKT 858 (895)
Q Consensus 788 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~ 858 (895)
+...++..+...|++++|+...++++. ..| +...|..++.+|...|+..+|++.|+++.. .|++|...+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~--~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALA--LDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 344455556666666777666666666 455 566666666667777776666666665432 255555543
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.31 Score=47.20 Aligned_cols=143 Identities=19% Similarity=0.156 Sum_probs=68.2
Q ss_pred HHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHH
Q 002664 376 CLGKKGRVTEAMKIFEAMKKDARPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEAGLFPNVMTVNIMVDRLCKAQKLDEA 455 (895)
Q Consensus 376 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 455 (895)
.....|++.+|...|.......+.+..+-..++.+|...|+.+.|..++..+...--.........-+..+.+.....+.
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~ 222 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEI 222 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCH
Confidence 34455666666666666665555566666666666666666666666666554321111111111222333333333333
Q ss_pred HHHHHHhhhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCC-cchhhHHHHHHHHHhcC
Q 002664 456 FSIFEGMDHKTCTPDAVTFCSLIDGLGKNGRVDDAYKFYEKMLDTDQI-PNAILYTSLIRNFFKHG 520 (895)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~ 520 (895)
..+-.+.... +.|...-..+...+...|+.++|.+.+-.+++++.. .+...-..++..+.-.|
T Consensus 223 ~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 223 QDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred HHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 3333332222 224445555666666666666666665555544221 23333444444443333
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.57 Score=48.01 Aligned_cols=78 Identities=13% Similarity=0.132 Sum_probs=49.7
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcC---CCcCHHHHHHHHHHHHh---cCChhHHHHHHHHHHhCCCCCChHhHHHHH
Q 002664 196 TTLIGALATVRESNLMLNLFHQMQELG---YEVSVHLFTTLIRVFAR---EGRVDDALFLLDEMKNNAFSVDIVLYNVCI 269 (895)
Q Consensus 196 ~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 269 (895)
..++-+|....+++..+++.+.+.... +.....+-...+-++.+ .|+.++|++++..++.....++..+|..++
T Consensus 145 ~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~G 224 (374)
T PF13281_consen 145 INLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLG 224 (374)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 344445777778888888888776641 11233333445555666 778888888887755554467777777777
Q ss_pred HHHH
Q 002664 270 DCFG 273 (895)
Q Consensus 270 ~~~~ 273 (895)
+.|.
T Consensus 225 RIyK 228 (374)
T PF13281_consen 225 RIYK 228 (374)
T ss_pred HHHH
Confidence 6664
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.95 Score=43.15 Aligned_cols=57 Identities=14% Similarity=0.071 Sum_probs=34.8
Q ss_pred HHHhcCChhHHHHHHHHHHHc--CCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 002664 201 ALATVRESNLMLNLFHQMQEL--GYEVSVHLFTTLIRVFAREGRVDDALFLLDEMKNNA 257 (895)
Q Consensus 201 ~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 257 (895)
.-.+.|++++|...|+.+... +.+....+...++.++.+.+++++|+..+++..+..
T Consensus 43 ~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ly 101 (254)
T COG4105 43 TELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLY 101 (254)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC
Confidence 334667777777777766643 112234455666666677777777777777766654
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=96.33 E-value=2.7 Score=47.64 Aligned_cols=464 Identities=11% Similarity=0.034 Sum_probs=239.0
Q ss_pred hhHHHHHHHHhhcCCCCchHHHhhhhcC-CCCChHHHHHHHh-hcC--ChHHHHHHHHHhhhcCCCCCCHHHHHHHHHHH
Q 002664 57 RTVVDDVYNILHAGPWGPAVENALSSLD-GMPQPGLVIGVLR-RLK--DVNLAINYFRWVERKTDQAHSLEAYNSLLMVM 132 (895)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~l~-~~~--~~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~l 132 (895)
+....+..+.+++++|... ......+. .++.|-+--..|. .++ .++.... ++.+.++.|.....-..-...+
T Consensus 34 r~~f~~A~~a~~~g~~~~~-~~~~~~l~d~pL~~yl~y~~L~~~l~~~~~~ev~~---Fl~~~~~~P~~~~Lr~~~l~~L 109 (644)
T PRK11619 34 RQRYQQIKQAWDNRQMDVV-EQLMPTLKDYPLYPYLEYRQLTQDLMNQPAVQVTN---FIRANPTLPPARSLQSRFVNEL 109 (644)
T ss_pred HHHHHHHHHHHHCCCHHHH-HHHHHhccCCCcHhHHHHHHHHhccccCCHHHHHH---HHHHCCCCchHHHHHHHHHHHH
Confidence 5677788888889987653 33334443 3343444334443 333 3443333 4555566665556666667777
Q ss_pred HccCCcchHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCChhHHH
Q 002664 133 AVSKNFEPLEEILGEMSLAGIGPTNNTCIELVVSCVKSKMLREAFDIIQTMRKFKFRPAFTAYTTLIGALATVRESNLML 212 (895)
Q Consensus 133 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 212 (895)
++.+++......+ ...+.+...-.....+....|+.++|......+...|. ..+..+..++..
T Consensus 110 a~~~~w~~~~~~~-----~~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~-~~p~~cd~l~~~----------- 172 (644)
T PRK11619 110 ARREDWRGLLAFS-----PEKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGK-SLPNACDKLFSV----------- 172 (644)
T ss_pred HHccCHHHHHHhc-----CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC-CCChHHHHHHHH-----------
Confidence 8888887766632 11345555556677778888988888877777765542 223334444444
Q ss_pred HHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHCC
Q 002664 213 NLFHQMQELGYEVSVHLFTTLIRVFAREGRVDDALFLLDEMKNNAFSVDIVLYNVCIDCFGKVGKVDMAWKFFHEMKAQG 292 (895)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 292 (895)
..+.|.-.+...+.. +......|+...|..+...+.. ........++..... ...+...+..
T Consensus 173 -----~~~~g~lt~~d~w~R-~~~al~~~~~~lA~~l~~~l~~----~~~~~a~a~~al~~~---p~~~~~~~~~----- 234 (644)
T PRK11619 173 -----WQQSGKQDPLAYLER-IRLAMKAGNTGLVTYLAKQLPA----DYQTIASALIKLQND---PNTVETFART----- 234 (644)
T ss_pred -----HHHcCCCCHHHHHHH-HHHHHHCCCHHHHHHHHHhcCh----hHHHHHHHHHHHHHC---HHHHHHHhhc-----
Confidence 444332222222222 3444466666666665554411 111122223332222 2222222111
Q ss_pred CCCCHHHHH--HHHHHHHhcCCHhHHHHHHHHHhhCCCC-CC--HHhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCH
Q 002664 293 VAPDDVTYT--SMIGVLCKSKRLEEAVAMFEQMDRNREV-PC--AYAYNTMIMGYGSVGKFDEAFSLFERLKQKGCIPSV 367 (895)
Q Consensus 293 ~~p~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 367 (895)
+.|+...-. .+.-.-....+.+.|..++........- +. ...+..++......+..++|...++...... .+.
T Consensus 235 ~~~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~ 312 (644)
T PRK11619 235 TGPTDFTRQMAAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QST 312 (644)
T ss_pred cCCChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCc
Confidence 112221111 1111112344557777777776443321 11 2234444444444432556666666544332 234
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 002664 368 IAYNSLLTCLGKKGRVTEAMKIFEAMKKDARPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEAGLFPNVMTVNIMVDRLC 447 (895)
Q Consensus 368 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 447 (895)
.....-+......++++.+...+..|............-+++++...|+.++|...|+++... . ..|..+...-
T Consensus 313 ~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~---~--~fYG~LAa~~- 386 (644)
T PRK11619 313 SLLERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQ---R--GFYPMVAAQR- 386 (644)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcC---C--CcHHHHHHHH-
Confidence 444555555567888888888888776555556667777788877788888888888887431 1 2333332211
Q ss_pred hcCChhHHHHHHHHh--hhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHhcCCHHHH
Q 002664 448 KAQKLDEAFSIFEGM--DHKTCTPDAVTFCSLIDGLGKNGRVDDAYKFYEKMLDTDQIPNAILYTSLIRNFFKHGRKEDG 525 (895)
Q Consensus 448 ~~g~~~~A~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 525 (895)
.|..-. ... ... ....+. . ..-..-+..+...|....|...+..+... .+......+.....+.|.++.+
T Consensus 387 -Lg~~~~-~~~-~~~~~~~~~~~-~-~~~~~ra~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~A~~~g~~~~a 458 (644)
T PRK11619 387 -LGEEYP-LKI-DKAPKPDSALT-Q-GPEMARVRELMYWNMDNTARSEWANLVAS---RSKTEQAQLARYAFNQQWWDLS 458 (644)
T ss_pred -cCCCCC-CCC-CCCCchhhhhc-c-ChHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCHHHH
Confidence 221100 000 000 000000 0 11223455667788888888888887764 2444555666666677777777
Q ss_pred HHHHHHHHH-----cCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHH
Q 002664 526 HKIYKEMVQ-----RGCSPDLMLLNTYMDCVFKAGETEKGRALFEEIKAQGFVPDVQS 578 (895)
Q Consensus 526 ~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 578 (895)
+........ ..++ ..|...+..+.+...++.+.-.--.-.++++.|+..+
T Consensus 459 i~~~~~~~~~~~~~~rfp---~~~~~~~~~~a~~~~v~~~lv~ai~rqES~f~p~a~S 513 (644)
T PRK11619 459 VQATIAGKLWDHLEERFP---LAWNDEFRRYTSGKGIPQSYAMAIARQESAWNPKARS 513 (644)
T ss_pred HHHHhhchhHHHHHHhCC---cchHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCCCcc
Confidence 665543221 1111 1355566666665566665543333346667776554
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.18 Score=44.90 Aligned_cols=71 Identities=23% Similarity=0.340 Sum_probs=49.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----HCCCCCChhhH
Q 002664 369 AYNSLLTCLGKKGRVTEAMKIFEAMKKDARPNNTTYNVLIDMLCKAGNFEDALKFRDAMK-----EAGLFPNVMTV 439 (895)
Q Consensus 369 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~~~ 439 (895)
+...++..+...|++++|..+.+.+....|.+...|..++.+|...|+..+|.+.|+++. +.|+.|+..+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 455666777788888888888888888888888888888888888888888888887764 34777766543
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.30 E-value=2.5 Score=47.09 Aligned_cols=176 Identities=16% Similarity=0.154 Sum_probs=90.3
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHc
Q 002664 267 VCIDCFGKVGKVDMAWKFFHEMKAQGVAPDDV--TYTSMIGVLCKSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGS 344 (895)
Q Consensus 267 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 344 (895)
.-+..+++..-++-|..+-+. .+..++.. .....++-+.+.|++++|...|-+.+.. .+| ..++.-|..
T Consensus 339 ~kL~iL~kK~ly~~Ai~LAk~---~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLd 409 (933)
T KOG2114|consen 339 TKLDILFKKNLYKVAINLAKS---QHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLD 409 (933)
T ss_pred HHHHHHHHhhhHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcC
Confidence 345555566666666665433 22222222 2333444556677777777766665542 111 123445556
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 002664 345 VGKFDEAFSLFERLKQKGCIPSVIAYNSLLTCLGKKGRVTEAMKIFEAMKKDARPNNTTYNVLIDMLCKAGNFEDALKFR 424 (895)
Q Consensus 345 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 424 (895)
...+.+-..+++.+.+.|.. +...-..|+.+|.+.++.+.-.+..+...++.- ..-....+..+.+.+-.++|..+-
T Consensus 410 aq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~--~fd~e~al~Ilr~snyl~~a~~LA 486 (933)
T KOG2114|consen 410 AQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEW--FFDVETALEILRKSNYLDEAELLA 486 (933)
T ss_pred HHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCCCcce--eeeHHHHHHHHHHhChHHHHHHHH
Confidence 66666666777777777654 445556677777777777665555443331100 001233444455555555555544
Q ss_pred HHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHh
Q 002664 425 DAMKEAGLFPNVMTVNIMVDRLCKAQKLDEAFSIFEGM 462 (895)
Q Consensus 425 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 462 (895)
.+... +... +--.+...+++++|++.+..+
T Consensus 487 ~k~~~-----he~v---l~ille~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 487 TKFKK-----HEWV---LDILLEDLHNYEEALRYISSL 516 (933)
T ss_pred HHhcc-----CHHH---HHHHHHHhcCHHHHHHHHhcC
Confidence 43322 1111 122234456677777776654
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.096 Score=43.22 Aligned_cols=91 Identities=14% Similarity=0.085 Sum_probs=56.4
Q ss_pred HHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCC--HHHHHHHHHHHHhcCC
Q 002664 760 GLCRVRKFNKAFVFWQEMQKQGFKPNTITYTTMISGLAKAGNITEANGLFERFKEN-GGVPD--SACYNAMMEGLSNANR 836 (895)
Q Consensus 760 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~--~~~~~~l~~~~~~~g~ 836 (895)
++...|+.+.|++.|.+.+.. .+-....||.-..++.-+|+.++|+.-+++.++. |-.-. ...|..-+..|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 455667777777777776653 2334566777777777777777777777777663 11111 2234444445666777
Q ss_pred HHHHHHHHHHHHHCC
Q 002664 837 AMDAYTLFEETRRKG 851 (895)
Q Consensus 837 ~~~A~~~~~~~~~~~ 851 (895)
-++|+.-|+.+.+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 777777777777766
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.32 Score=48.02 Aligned_cols=156 Identities=10% Similarity=0.073 Sum_probs=76.9
Q ss_pred hcCChhHHHHHHHHHHHc--CCCcCHHHHHHHHHHHHhcCChhHHHHHHHHH----HhCC-CCCChHhHHHHHHHHHhcC
Q 002664 204 TVRESNLMLNLFHQMQEL--GYEVSVHLFTTLIRVFAREGRVDDALFLLDEM----KNNA-FSVDIVLYNVCIDCFGKVG 276 (895)
Q Consensus 204 ~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~-~~~~~~~~~~l~~~~~~~g 276 (895)
...++++|+..|.+.+.. +......++..+..+.++.|.+++++..--.. .+.. -..-...|..+.+++-+.-
T Consensus 18 ~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~ 97 (518)
T KOG1941|consen 18 QSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLC 97 (518)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555554432 01112234455556666666666654432211 1110 0001223444555555555
Q ss_pred ChhhHHHHHHHHHHC-CCCCC---HHHHHHHHHHHHhcCCHhHHHHHHHHHhhCC-----CCCCHHhHHHHHHHHHccCC
Q 002664 277 KVDMAWKFFHEMKAQ-GVAPD---DVTYTSMIGVLCKSKRLEEAVAMFEQMDRNR-----EVPCAYAYNTMIMGYGSVGK 347 (895)
Q Consensus 277 ~~~~A~~~~~~~~~~-g~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~ 347 (895)
++.+++.+-+.-... |..|. -....++..++...+.++++++.|+...+.- +...-.+|..|...|.+..|
T Consensus 98 ~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D 177 (518)
T KOG1941|consen 98 EFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKD 177 (518)
T ss_pred HhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHh
Confidence 555555554443332 22221 1123345566666777777777777765421 11223466777777777777
Q ss_pred HHHHHHHHHHHH
Q 002664 348 FDEAFSLFERLK 359 (895)
Q Consensus 348 ~~~A~~~~~~~~ 359 (895)
+++|.-+..+..
T Consensus 178 ~~Kal~f~~kA~ 189 (518)
T KOG1941|consen 178 YEKALFFPCKAA 189 (518)
T ss_pred hhHHhhhhHhHH
Confidence 777766655544
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.22 E-value=2.6 Score=46.41 Aligned_cols=110 Identities=17% Similarity=0.186 Sum_probs=72.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 002664 369 AYNSLLTCLGKKGRVTEAMKIFEAMKKDARPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEAGLFPNVMTVNIMVDRLCK 448 (895)
Q Consensus 369 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 448 (895)
+.+--+..+...|+..+|.++-.+.+ -|+...|-.-+.++...++|++-+++-+.+. .+.-|..+...|.+
T Consensus 686 Sl~dTv~~li~~g~~k~a~ql~~~Fk---ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~ 756 (829)
T KOG2280|consen 686 SLHDTVTTLILIGQNKRAEQLKSDFK---IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLK 756 (829)
T ss_pred cHHHHHHHHHHccchHHHHHHHHhcC---CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHh
Confidence 33444445556677777777665543 4566677777777888888877776655543 24456667778888
Q ss_pred cCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHH
Q 002664 449 AQKLDEAFSIFEGMDHKTCTPDAVTFCSLIDGLGKNGRVDDAYKFYEK 496 (895)
Q Consensus 449 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 496 (895)
.|+.++|...+.+.... . -...+|.+.|++.+|.+.--+
T Consensus 757 ~~n~~EA~KYiprv~~l-----~----ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 757 QGNKDEAKKYIPRVGGL-----Q----EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred cccHHHHhhhhhccCCh-----H----HHHHHHHHhccHHHHHHHHHH
Confidence 88888888877654322 1 456677777888777765544
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=96.20 E-value=1.1 Score=51.80 Aligned_cols=100 Identities=19% Similarity=0.292 Sum_probs=45.5
Q ss_pred cCCHhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 002664 310 SKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLFERLKQKGCIPSVIAYNSLLTCLGKKGRVTEAMKI 389 (895)
Q Consensus 310 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 389 (895)
.|+|+.|+.-+.++-. ..|.-....-.+.|.+.+|+.++.-=.+. ....|...+..+...+.+++|.-.
T Consensus 893 L~ry~~AL~hLs~~~~-------~~~~e~~n~I~kh~Ly~~aL~ly~~~~e~----~k~i~~~ya~hL~~~~~~~~Aal~ 961 (1265)
T KOG1920|consen 893 LKRYEDALSHLSECGE-------TYFPECKNYIKKHGLYDEALALYKPDSEK----QKVIYEAYADHLREELMSDEAALM 961 (1265)
T ss_pred HHHHHHHHHHHHHcCc-------cccHHHHHHHHhcccchhhhheeccCHHH----HHHHHHHHHHHHHHhccccHHHHH
Confidence 4566666666655431 12222223333555566665554321111 122333444444455555555555
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002664 390 FEAMKKDARPNNTTYNVLIDMLCKAGNFEDALKFRDAMK 428 (895)
Q Consensus 390 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 428 (895)
|+..-+ ....+.+|..+|+|.+|+.+..++.
T Consensus 962 Ye~~Gk--------lekAl~a~~~~~dWr~~l~~a~ql~ 992 (1265)
T KOG1920|consen 962 YERCGK--------LEKALKAYKECGDWREALSLAAQLS 992 (1265)
T ss_pred HHHhcc--------HHHHHHHHHHhccHHHHHHHHHhhc
Confidence 544322 2223444445555655555555443
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.64 Score=45.10 Aligned_cols=144 Identities=13% Similarity=0.073 Sum_probs=78.8
Q ss_pred HHHhcCCHhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 002664 306 VLCKSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLFERLKQKGCIPSVIAYNSLLTCLGKKGRVTE 385 (895)
Q Consensus 306 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 385 (895)
.....|++.+|...|+......+. +...-..++.+|...|+.+.|..++..+....-.........-+..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 455677777777777777766655 4556666777777777777777777766543211111111112223333322222
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCChhhHHHHHHHHHhcCC
Q 002664 386 AMKIFEAMKKDARPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEAGL-FPNVMTVNIMVDRLCKAQK 451 (895)
Q Consensus 386 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~ 451 (895)
...+-.. ....|.|...-..++..+...|+.++|.+.+-.++..+. ..|...-..++..+.-.|.
T Consensus 222 ~~~l~~~-~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~ 287 (304)
T COG3118 222 IQDLQRR-LAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGP 287 (304)
T ss_pred HHHHHHH-HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCC
Confidence 2222221 224566777777777777777888887776655554321 1233444455555544443
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.15 E-value=3.1 Score=46.61 Aligned_cols=195 Identities=10% Similarity=0.121 Sum_probs=91.2
Q ss_pred CHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHc-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----hcCCHHHH
Q 002664 661 RLDEAYMLFEEAKSKGIELNTVIYSSLIDGFGK-VGRIDEAYLIMEELMQKGLTPNAYTWNCLLDALV----KAEEISEA 735 (895)
Q Consensus 661 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~----~~g~~~~A 735 (895)
+.+.|..++.+..+.| .|+.......+..... ..++..|.++|..+.+.|.. .....+..+|. ...+...|
T Consensus 308 d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~~G~gv~r~~~~A 383 (552)
T KOG1550|consen 308 DYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYELGLGVERNLELA 383 (552)
T ss_pred cHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhCCCcCCCHHHH
Confidence 4556666666666665 2333332222211111 13456677777766665532 22222332222 12356677
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHH---Hh----cCCHHHHHHH
Q 002664 736 FVCFQSMKDLKCTPNHVTYSIIINGLCRVRKFNKAFVFWQEMQKQGFKPNTITYTTMISGL---AK----AGNITEANGL 808 (895)
Q Consensus 736 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~---~~----~g~~~~A~~~ 808 (895)
..++.+..+.+ .|...--...+..+.. ++++.+.-.+..+.+.|.+.....-..++... .. ..+.+.+...
T Consensus 384 ~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~ 461 (552)
T KOG1550|consen 384 FAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSL 461 (552)
T ss_pred HHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccchhHHHHH
Confidence 77777776655 2221111112222222 56666665555555544332211111111111 00 1244555555
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh
Q 002664 809 FERFKENGGVPDSACYNAMMEGLSNA----NRAMDAYTLFEETRRKGFNIHTKTCVILLDALHK 868 (895)
Q Consensus 809 ~~~~~~~~~~p~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 868 (895)
+.+....| +......|...|+.- .+++.|...|......+ ....+.|+.++-.
T Consensus 462 ~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~----~~~~~nlg~~~e~ 518 (552)
T KOG1550|consen 462 YSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG----AQALFNLGYMHEH 518 (552)
T ss_pred HHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh----hHHHhhhhhHHhc
Confidence 55555432 445555555555442 24667777777766654 5666666666644
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.37 Score=50.20 Aligned_cols=116 Identities=13% Similarity=0.080 Sum_probs=72.4
Q ss_pred HhHHHHHHHHHh---hCCCCCCHHhHHHHHHHHHc---------cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 002664 313 LEEAVAMFEQMD---RNREVPCAYAYNTMIMGYGS---------VGKFDEAFSLFERLKQKGCIPSVIAYNSLLTCLGKK 380 (895)
Q Consensus 313 ~~~A~~~~~~~~---~~~~~~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 380 (895)
.+.|+.+|.+.+ ..++. ...+|..+..++.. ..+..+|.++-++.++.+. .|..+...++.+..-.
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~-~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~-~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTL-KTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITT-VDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHhhcccCCcc-cHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhh
Confidence 456666677766 43332 34444444333221 2345566666666666653 3666666666666666
Q ss_pred CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 002664 381 GRVTEAMKIFEAMKKDARPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEA 430 (895)
Q Consensus 381 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 430 (895)
++++.|...|++.....|....+|........-.|+.++|.+.+++..+.
T Consensus 352 ~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL 401 (458)
T PRK11906 352 GQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQL 401 (458)
T ss_pred cchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 77777777777777777777777777777777777777777777776653
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.13 Score=53.25 Aligned_cols=62 Identities=15% Similarity=-0.007 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCCH---HhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 002664 298 VTYTSMIGVLCKSKRLEEAVAMFEQMDRNREVPCA---YAYNTMIMGYGSVGKFDEAFSLFERLKQ 360 (895)
Q Consensus 298 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 360 (895)
..++.++.+|...|++++|+..|++.++.++. +. .+|..++.+|...|++++|+..++++++
T Consensus 76 ~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd-~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 76 EDAVNLGLSLFSKGRVKDALAQFETALELNPN-PDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444444444555555555555544444333 11 2344445555555555555555554444
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=96.11 E-value=3.5 Score=46.97 Aligned_cols=186 Identities=17% Similarity=0.139 Sum_probs=93.4
Q ss_pred HHHHHHHHHhhhcCCCCCCHH--HHHHHHHHHH-ccCCcchHHHHHHHHHHcCCCCCh-----hhHHHHHHHHHhcCChH
Q 002664 103 NLAINYFRWVERKTDQAHSLE--AYNSLLMVMA-VSKNFEPLEEILGEMSLAGIGPTN-----NTCIELVVSCVKSKMLR 174 (895)
Q Consensus 103 ~~a~~~f~~~~~~~~~~~~~~--~~~~l~~~l~-~~~~~~~a~~~l~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~ 174 (895)
..|++-++.+.++...++..+ ++..++.+|. ...+++.|+..+++.......++. .....++..+.+.+...
T Consensus 38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~ 117 (608)
T PF10345_consen 38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA 117 (608)
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH
Confidence 356666666665443333322 5777777777 577888888888876443222221 12234444454444444
Q ss_pred HHHHHHHHHHhCCCC----cCHHHHHHH-HHHHHhcCChhHHHHHHHHHHHcC---CCcCHHHHHHHHHHH--HhcCChh
Q 002664 175 EAFDIIQTMRKFKFR----PAFTAYTTL-IGALATVRESNLMLNLFHQMQELG---YEVSVHLFTTLIRVF--AREGRVD 244 (895)
Q Consensus 175 ~A~~~~~~~~~~~~~----~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~--~~~g~~~ 244 (895)
|...+++.++.--. +-...+..+ +..+...+++..|.+.++.+.... ..+...++..++.+. .+.+..+
T Consensus 118 -a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~ 196 (608)
T PF10345_consen 118 -ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPD 196 (608)
T ss_pred -HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCch
Confidence 77777665543111 112222222 222222367777777777665532 223333343443332 3455566
Q ss_pred HHHHHHHHHHhCCC---------CCChHhHHHHHHHHH--hcCChhhHHHHHHHHH
Q 002664 245 DALFLLDEMKNNAF---------SVDIVLYNVCIDCFG--KVGKVDMAWKFFHEMK 289 (895)
Q Consensus 245 ~A~~~~~~~~~~~~---------~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~ 289 (895)
++.+.++++..... .|-..+|..+++.++ ..|+++.+.+.++++.
T Consensus 197 d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 197 DVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred hHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 66666666532111 223445555555443 4566556655555443
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.015 Score=38.84 Aligned_cols=40 Identities=10% Similarity=0.056 Sum_probs=23.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHH
Q 002664 823 CYNAMMEGLSNANRAMDAYTLFEETRRKGFNIHTKTCVILL 863 (895)
Q Consensus 823 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 863 (895)
++..++..|...|++++|+++|+++++.. |.+...+..|+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~-P~~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALD-PDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCCHHHHHHhh
Confidence 45556666666666666666666666652 55555555544
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.031 Score=57.68 Aligned_cols=98 Identities=13% Similarity=0.097 Sum_probs=69.9
Q ss_pred CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 002664 749 PNHVTYSIIINGLCRVRKFNKAFVFWQEMQKQGFKPNT----ITYTTMISGLAKAGNITEANGLFERFKENGGVPDSACY 824 (895)
Q Consensus 749 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 824 (895)
.+...++.+..+|...|++++|+..|++.++ +.|+. .+|.++..+|...|++++|+..++++++.+ .| .|
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALe--L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels-n~---~f 146 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALE--LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY-NL---KF 146 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-ch---hH
Confidence 3557788999999999999999999999887 56764 358999999999999999999999999841 22 22
Q ss_pred HHHHH--HHHhcCCHHHHHHHHHHHHHCCC
Q 002664 825 NAMME--GLSNANRAMDAYTLFEETRRKGF 852 (895)
Q Consensus 825 ~~l~~--~~~~~g~~~~A~~~~~~~~~~~~ 852 (895)
..+.. .+....+.++..++++.+..-|.
T Consensus 147 ~~i~~DpdL~plR~~pef~eLlee~rk~G~ 176 (453)
T PLN03098 147 STILNDPDLAPFRASPEFKELQEEARKGGE 176 (453)
T ss_pred HHHHhCcchhhhcccHHHHHHHHHHHHhCC
Confidence 21111 11122234466677777776664
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.41 Score=49.89 Aligned_cols=81 Identities=16% Similarity=0.071 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHH
Q 002664 419 DALKFRDAMKEAGLFPNVMTVNIMVDRLCKAQKLDEAFSIFEGMDHKTCTPDAVTFCSLIDGLGKNGRVDDAYKFYEKML 498 (895)
Q Consensus 419 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 498 (895)
+|.++.++..+.+ +.|......+...+...++++.|..+|++....+ +..+.+|...+....-.|+.++|.+.+++.+
T Consensus 322 ~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~al 399 (458)
T PRK11906 322 KALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDKSL 399 (458)
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 3444444444433 1234444444444444444555555555444432 1123334444444444555555555555555
Q ss_pred hCC
Q 002664 499 DTD 501 (895)
Q Consensus 499 ~~~ 501 (895)
+..
T Consensus 400 rLs 402 (458)
T PRK11906 400 QLE 402 (458)
T ss_pred ccC
Confidence 443
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.68 Score=48.31 Aligned_cols=177 Identities=15% Similarity=0.126 Sum_probs=92.6
Q ss_pred ccCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHH
Q 002664 623 KSGKVNKAYQLLEEMKTKGHYPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNTVIYSSLIDGFGKVGRIDEAYL 702 (895)
Q Consensus 623 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 702 (895)
+..+.+.-++.-.+.++. .|+..+...++ +-.......+|.++++++.+.|- ..+..- ......|.
T Consensus 180 RERnp~aRIkaA~eALei--~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkAgE----~~lg~s-~~~~~~g~------ 245 (539)
T PF04184_consen 180 RERNPQARIKAAKEALEI--NPDCADAYILL-AEEEASTIVEAEELLRQAVKAGE----ASLGKS-QFLQHHGH------ 245 (539)
T ss_pred hcCCHHHHHHHHHHHHHh--hhhhhHHHhhc-ccccccCHHHHHHHHHHHHHHHH----Hhhchh-hhhhcccc------
Confidence 334455555555555544 33333222111 12234557888888888776541 011000 00011111
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCC
Q 002664 703 IMEELMQKGLTPNAYTWNCLLDALVKAEEISEAFVCFQSMKDLKCT-PNHVTYSIIINGLCRVRKFNKAFVFWQEMQKQG 781 (895)
Q Consensus 703 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 781 (895)
.++........|-..+-..|..++.+.|+.++|++.++++.+.... .+......|+.++...+.+.++..++.+.-+..
T Consensus 246 ~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~ 325 (539)
T PF04184_consen 246 FWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDIS 325 (539)
T ss_pred hhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcccc
Confidence 1122222222233444455777788888889999988888864322 123455678888888888888888888865432
Q ss_pred CCCCH--HHHHHHHHHHHhcCC---------------HHHHHHHHHHHHH
Q 002664 782 FKPNT--ITYTTMISGLAKAGN---------------ITEANGLFERFKE 814 (895)
Q Consensus 782 ~~p~~--~~~~~l~~~~~~~g~---------------~~~A~~~~~~~~~ 814 (895)
.|.. ..|+..+-.....|+ -..|++.+.++.+
T Consensus 326 -lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAve 374 (539)
T PF04184_consen 326 -LPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVE 374 (539)
T ss_pred -CCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHH
Confidence 2332 344443333332332 1235677777777
|
The molecular function of this protein is uncertain. |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.94 E-value=1.2 Score=40.77 Aligned_cols=181 Identities=13% Similarity=0.046 Sum_probs=83.0
Q ss_pred hcCChhHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHH
Q 002664 239 REGRVDDALFLLDEMKNNAFSVDIVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGVAPDDVTYTSMIGVLCKSKRLEEAVA 318 (895)
Q Consensus 239 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~ 318 (895)
..|-..-|+-=|.+.+... +.-..+||.++--+...|+++.|.+.|+...+.++.-+ .+...-+-.+.--|++.-|.+
T Consensus 77 SlGL~~LAR~DftQaLai~-P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~-Ya~lNRgi~~YY~gR~~LAq~ 154 (297)
T COG4785 77 SLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN-YAHLNRGIALYYGGRYKLAQD 154 (297)
T ss_pred hhhHHHHHhhhhhhhhhcC-CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcch-HHHhccceeeeecCchHhhHH
Confidence 3344444444444444432 22345566666666777777777777777766532211 122222223345667777766
Q ss_pred HHHHHhhCCCC-CCHHhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCC
Q 002664 319 MFEQMDRNREV-PCAYAYNTMIMGYGSVGKFDEAFSLFERLKQKGCIPSVIAYNSLLTCLGKKGRVTEAMKIFEAMKKDA 397 (895)
Q Consensus 319 ~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 397 (895)
-|.+.-+.++. |-...|.-+.. ..-++.+|..-+.+--+. .|..-|...|-.+.- |++. ...+++.+....
T Consensus 155 d~~~fYQ~D~~DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~~---~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~a 226 (297)
T COG4785 155 DLLAFYQDDPNDPFRSLWLYLNE---QKLDPKQAKTNLKQRAEK---SDKEQWGWNIVEFYL-GKIS-EETLMERLKADA 226 (297)
T ss_pred HHHHHHhcCCCChHHHHHHHHHH---hhCCHHHHHHHHHHHHHh---ccHhhhhHHHHHHHH-hhcc-HHHHHHHHHhhc
Confidence 66655544432 22333333332 223444444433322221 133333332222211 1111 112233333222
Q ss_pred CCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002664 398 RPN-------NTTYNVLIDMLCKAGNFEDALKFRDAMKE 429 (895)
Q Consensus 398 ~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 429 (895)
..+ +.+|..++..+...|+.++|..+|+-...
T Consensus 227 ~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaia 265 (297)
T COG4785 227 TDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVA 265 (297)
T ss_pred cchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 221 23566666666666666666666666554
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.22 Score=48.47 Aligned_cols=151 Identities=11% Similarity=0.005 Sum_probs=93.6
Q ss_pred HccCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHH----HHHHHHHHHHccCCH
Q 002664 622 CKSGKVNKAYQLLEEMKTKGHYPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNTV----IYSSLIDGFGKVGRI 697 (895)
Q Consensus 622 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~ 697 (895)
...|+..+|...++++++. .+-|...+.-.-.++...|+.+.-...++++... ..++.. .-..+..++...|-+
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 4567777777778877765 2335666666667777788877777777777654 123332 223344556677888
Q ss_pred HHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC----CHHHHHHHHHHHHhcCCHhHHHH
Q 002664 698 DEAYLIMEELMQKGLTP-NAYTWNCLLDALVKAEEISEAFVCFQSMKDLKCTP----NHVTYSIIINGLCRVRKFNKAFV 772 (895)
Q Consensus 698 ~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~ 772 (895)
++|.+.-++..+. .+ |.-+-.++...+...|+.+++.+...+-... ..- -...|--..-.+.+.+.++.|++
T Consensus 192 ~dAEk~A~ralqi--N~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~-Wr~s~mlasHNyWH~Al~~iE~aeye~ale 268 (491)
T KOG2610|consen 192 DDAEKQADRALQI--NRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDD-WRQSWMLASHNYWHTALFHIEGAEYEKALE 268 (491)
T ss_pred hhHHHHHHhhccC--CCcchHHHHHHHHHHHhcchhhhHHHHHHhcccc-hhhhhHHHhhhhHHHHHhhhcccchhHHHH
Confidence 8888888877773 33 5555566666777778888888776654431 110 01122223334556678888888
Q ss_pred HHHHH
Q 002664 773 FWQEM 777 (895)
Q Consensus 773 ~~~~~ 777 (895)
+|+.-
T Consensus 269 IyD~e 273 (491)
T KOG2610|consen 269 IYDRE 273 (491)
T ss_pred HHHHH
Confidence 88743
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.7 Score=50.27 Aligned_cols=118 Identities=18% Similarity=0.215 Sum_probs=75.1
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHhcC--C-CCCHHHHHHHHHHHHhcCCHhH
Q 002664 694 VGRIDEAYLIMEELMQKGLTPNAYTWN-CLLDALVKAEEISEAFVCFQSMKDLK--C-TPNHVTYSIIINGLCRVRKFNK 769 (895)
Q Consensus 694 ~g~~~~A~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~--~-~p~~~~~~~l~~~~~~~g~~~~ 769 (895)
..+.+.|.++++.+.+. -|+...|. .-++.+...|++++|++.|++..... . ......+.-+++++....+|++
T Consensus 246 ~~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~ 323 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEE 323 (468)
T ss_pred CCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHH
Confidence 45677788888887773 35544443 34566677888888888888765311 1 1122344456777788888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCH-------HHHHHHHHHHHH
Q 002664 770 AFVFWQEMQKQGFKPNTITYTTMISG-LAKAGNI-------TEANGLFERFKE 814 (895)
Q Consensus 770 A~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~-------~~A~~~~~~~~~ 814 (895)
|.+.+..+.+.+ ..+..+|..+..+ +...|+. ++|.+++.++..
T Consensus 324 A~~~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 324 AAEYFLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 888888888752 3344455544443 5566777 777777777643
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=95.71 E-value=5.2 Score=45.65 Aligned_cols=182 Identities=12% Similarity=0.113 Sum_probs=88.6
Q ss_pred HHHHHHHHHH-cCCCcC--HHHHHHHHHHHH-hcCChhHHHHHHHHHHhCCCCCCh-----HhHHHHHHHHHhcCChhhH
Q 002664 211 MLNLFHQMQE-LGYEVS--VHLFTTLIRVFA-REGRVDDALFLLDEMKNNAFSVDI-----VLYNVCIDCFGKVGKVDMA 281 (895)
Q Consensus 211 a~~~~~~~~~-~~~~~~--~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A 281 (895)
|+.+++-+.+ ...+|. ..+...++..+. ...+++.|...+++.....-.++. .....++..+.+.+... |
T Consensus 40 ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a 118 (608)
T PF10345_consen 40 AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-A 118 (608)
T ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-H
Confidence 4555555552 222222 234555566655 556777777777766433212211 11234455565555555 7
Q ss_pred HHHHHHHHHC--C--CCCCHHHHHHH-HHHHHhcCCHhHHHHHHHHHhhCC---CCCCHHhHHHHHHH--HHccCCHHHH
Q 002664 282 WKFFHEMKAQ--G--VAPDDVTYTSM-IGVLCKSKRLEEAVAMFEQMDRNR---EVPCAYAYNTMIMG--YGSVGKFDEA 351 (895)
Q Consensus 282 ~~~~~~~~~~--g--~~p~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~--~~~~g~~~~A 351 (895)
...+++.++. + ..+-...+..+ +..+...+++..|.+.++.+.... ..|...++..+..+ ..+.+..+++
T Consensus 119 ~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~ 198 (608)
T PF10345_consen 119 LKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDV 198 (608)
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhH
Confidence 7777666553 1 11112223323 222223367777777777765432 22333444444433 3345556666
Q ss_pred HHHHHHHHhcCC---------CCCHHHHHHHHHHHH--hcCCHHHHHHHHHHH
Q 002664 352 FSLFERLKQKGC---------IPSVIAYNSLLTCLG--KKGRVTEAMKIFEAM 393 (895)
Q Consensus 352 ~~~~~~~~~~~~---------~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~ 393 (895)
.+.++++..... .|...++..++..++ ..|++..+.+.++++
T Consensus 199 ~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 199 LELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 666665533211 223445555555443 556666666665544
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.15 Score=42.15 Aligned_cols=92 Identities=18% Similarity=0.052 Sum_probs=60.8
Q ss_pred HHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChh---hHHHHHHHHHhcCC
Q 002664 375 TCLGKKGRVTEAMKIFEAMKKDARPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEAGLFPNVM---TVNIMVDRLCKAQK 451 (895)
Q Consensus 375 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~ 451 (895)
-++...|+.+.|++.|.+.....|.+..+||.-+.++.-.|+.++|++-+++.++..-..... .|..-...|...|+
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 356677888888888888888888888888888888888888888888888877642111111 12222233444555
Q ss_pred hhHHHHHHHHhhhCC
Q 002664 452 LDEAFSIFEGMDHKT 466 (895)
Q Consensus 452 ~~~A~~~~~~~~~~~ 466 (895)
.+.|..-|+...+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 566665555554443
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.38 Score=41.37 Aligned_cols=59 Identities=15% Similarity=0.097 Sum_probs=30.6
Q ss_pred HHHhcCChhhHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCC
Q 002664 271 CFGKVGKVDMAWKFFHEMKAQGVA--PDDVTYTSMIGVLCKSKRLEEAVAMFEQMDRNREV 329 (895)
Q Consensus 271 ~~~~~g~~~~A~~~~~~~~~~g~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 329 (895)
...+.|++++|.+.|+.+...-+. -...+...|+.+|.+.|++++|+..+++.++..|.
T Consensus 19 ~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~ 79 (142)
T PF13512_consen 19 EALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPT 79 (142)
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 334556666666666665554111 11223444555566666666666666665555544
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.59 E-value=1.5 Score=38.66 Aligned_cols=128 Identities=13% Similarity=0.131 Sum_probs=69.0
Q ss_pred HccCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHH-HH--HHHHHHHHhcCCH
Q 002664 692 GKVGRIDEAYLIMEELMQKGLTPNAYT-WNCLLDALVKAEEISEAFVCFQSMKDLKCTPNHV-TY--SIIINGLCRVRKF 767 (895)
Q Consensus 692 ~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~--~~l~~~~~~~g~~ 767 (895)
.+.+..++|+..|..+.+.|...-++. ..-........|+...|+..|.++-.....|-.. -. ..-...+...|.|
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 445666777777777766554432221 1122334455677777777777766543333221 11 1122334556677
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 002664 768 NKAFVFWQEMQKQGFKPNTITYTTMISGLAKAGNITEANGLFERFKENGGVP 819 (895)
Q Consensus 768 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 819 (895)
++.....+.+...+-+.....-..|.-+-.+.|++.+|.+.|..+......|
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 7766666655543322233444556666667777777777777776644444
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.029 Score=37.39 Aligned_cols=40 Identities=15% Similarity=0.213 Sum_probs=25.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 002664 369 AYNSLLTCLGKKGRVTEAMKIFEAMKKDARPNNTTYNVLI 408 (895)
Q Consensus 369 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 408 (895)
++..+...|...|++++|+++|+++.+..|.|..++..++
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 4555666666666666666666666666666666665554
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=95.39 E-value=3.4 Score=41.52 Aligned_cols=103 Identities=9% Similarity=0.059 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHhcCChh---HHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHhHHHHH
Q 002664 193 TAYTTLIGALATVRESN---LMLNLFHQMQELGYEVSVHLFTTLIRVFAREGRVDDALFLLDEMKNNAFSVDIVLYNVCI 269 (895)
Q Consensus 193 ~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 269 (895)
.++..++.+|...+.++ +|..+.+.+... ++..+.++..-+.++.+.++.+++.+.+.+|...- ......+..++
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l 162 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHHH
Confidence 34555566666655443 344455555332 22234445455555556677777777777776542 11223333333
Q ss_pred HHHH--hcCChhhHHHHHHHHHHCCCCCCH
Q 002664 270 DCFG--KVGKVDMAWKFFHEMKAQGVAPDD 297 (895)
Q Consensus 270 ~~~~--~~g~~~~A~~~~~~~~~~g~~p~~ 297 (895)
+.+. .......|...+..++...+.|..
T Consensus 163 ~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 163 HHIKQLAEKSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHHhhCcHHHHHHHHHHHHHHhCCCh
Confidence 3331 122334555555555544344443
|
It is also involved in sporulation []. |
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=95.38 E-value=4.3 Score=42.58 Aligned_cols=175 Identities=10% Similarity=0.086 Sum_probs=84.6
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 002664 680 NTVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNAYTWNCLLDALVKAEEISEAFVCFQSMKDLKCTPNHVTYSIIIN 759 (895)
Q Consensus 680 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 759 (895)
|-....+++..+....++.-...+..+++.. ..+-..|..++.+|... ..+.-..+++++.+..+ .|...-..|+.
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~--~e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEY--GESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHh--cchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHHHH
Confidence 3444455556665555555566666666663 24555566666666655 33555556666655331 12222223333
Q ss_pred HHHhcCCHhHHHHHHHHHHHCCCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHH
Q 002664 760 GLCRVRKFNKAFVFWQEMQKQGFKPN------TITYTTMISGLAKAGNITEANGLFERFKEN-GGVPDSACYNAMMEGLS 832 (895)
Q Consensus 760 ~~~~~g~~~~A~~~~~~~~~~~~~p~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~ 832 (895)
.|.+ ++.+.+..+|.++... +.|. ...|..|... -..+.+.-..+..++.+. |..--...+..+-.-|.
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yr-fI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYR-FIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHH-hcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 3333 5556666666666543 2221 1244444432 124555555555555442 21112333334444455
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHhhHHHHH
Q 002664 833 NANRAMDAYTLFEETRRKGFNIHTKTCVILL 863 (895)
Q Consensus 833 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 863 (895)
...++.+|++++..+++.. ..+..+...++
T Consensus 217 ~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i 246 (711)
T COG1747 217 ENENWTEAIRILKHILEHD-EKDVWARKEII 246 (711)
T ss_pred cccCHHHHHHHHHHHhhhc-chhhhHHHHHH
Confidence 5566666666666665553 34444333333
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=95.36 E-value=1.5 Score=46.03 Aligned_cols=58 Identities=10% Similarity=0.190 Sum_probs=28.7
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002664 756 IIINGLCRVRKFNKAFVFWQEMQKQG-FKPNTITYTTMISGLAKAGNITEANGLFERFK 813 (895)
Q Consensus 756 ~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 813 (895)
.+..++-+.|+.++|++.+.+|.+.. ...+..+...|+.++...+.+.++..++.+-.
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 34444555555555555555554321 01112345555555555555555555555543
|
The molecular function of this protein is uncertain. |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.19 Score=45.12 Aligned_cols=104 Identities=13% Similarity=0.083 Sum_probs=78.5
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHH
Q 002664 757 IINGLCRVRKFNKAFVFWQEMQKQGFKPN-----TITYTTMISGLAKAGNITEANGLFERFKENGGVP-DSACYNAMMEG 830 (895)
Q Consensus 757 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~ 830 (895)
-.+-+...|+|++|..-|..+++. +++. ...|..-..++.+.+.++.|+.-..+.++ +.| ...+...-+.+
T Consensus 101 EGN~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaie--l~pty~kAl~RRAea 177 (271)
T KOG4234|consen 101 EGNELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIE--LNPTYEKALERRAEA 177 (271)
T ss_pred HHHHhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHh--cCchhHHHHHHHHHH
Confidence 356678899999999999999985 2332 34566667778899999999999999998 666 34555566778
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 002664 831 LSNANRAMDAYTLFEETRRKGFNIHTKTCVILLD 864 (895)
Q Consensus 831 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 864 (895)
|.+..++++|+.-|.++++.. |....+...+++
T Consensus 178 yek~ek~eealeDyKki~E~d-Ps~~ear~~i~r 210 (271)
T KOG4234|consen 178 YEKMEKYEEALEDYKKILESD-PSRREAREAIAR 210 (271)
T ss_pred HHhhhhHHHHHHHHHHHHHhC-cchHHHHHHHHh
Confidence 999999999999999999884 444444444443
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=95.28 E-value=4 Score=41.62 Aligned_cols=102 Identities=19% Similarity=0.212 Sum_probs=48.4
Q ss_pred HHHHHccCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCH
Q 002664 618 VDGFCKSGKVNKAYQLLEEMKTKGHYPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNTVIYSSLIDGFGKVGRI 697 (895)
Q Consensus 618 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 697 (895)
+.-+...|+...|.++-.+.. .|+...|-..+.+++..++|++-..+-.. .-++.-|...+..|.+.|+.
T Consensus 184 i~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~ 253 (319)
T PF04840_consen 184 IRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNK 253 (319)
T ss_pred HHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCH
Confidence 344444555555554443331 24555555555555555555554443211 11234455555555555555
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 002664 698 DEAYLIMEELMQKGLTPNAYTWNCLLDALVKAEEISEAFVCF 739 (895)
Q Consensus 698 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 739 (895)
.+|..+..++ + + ..-+..|.+.|++.+|.+..
T Consensus 254 ~eA~~yI~k~-----~-~----~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 254 KEASKYIPKI-----P-D----EERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred HHHHHHHHhC-----C-h----HHHHHHHHHCCCHHHHHHHH
Confidence 5555555441 1 1 23344455555555555443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=95.27 E-value=8.2 Score=45.19 Aligned_cols=21 Identities=14% Similarity=0.249 Sum_probs=12.5
Q ss_pred HHHHHHHhcCChhHHHHHHHH
Q 002664 232 TLIRVFAREGRVDDALFLLDE 252 (895)
Q Consensus 232 ~l~~~~~~~g~~~~A~~~~~~ 252 (895)
.-++-++..+++.+|+++.++
T Consensus 682 a~vr~~l~~~~y~~AF~~~Rk 702 (1265)
T KOG1920|consen 682 AKVRTLLDRLRYKEAFEVMRK 702 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555666677776666544
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=95.26 E-value=3.8 Score=41.22 Aligned_cols=163 Identities=12% Similarity=0.076 Sum_probs=76.5
Q ss_pred HHHHHHHHHHccCCHH---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 002664 683 IYSSLIDGFGKVGRID---EAYLIMEELMQKGLTPNAYTWNCLLDALVKAEEISEAFVCFQSMKDLKCTPNHVTYSIIIN 759 (895)
Q Consensus 683 ~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 759 (895)
++..++.+|...+..+ +|..+.+.+.... +..+..+..-+..+.+.++.+++.+.+.+|+..- .-....+...+.
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l~ 163 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSILH 163 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHHHH
Confidence 4555666676666543 4455555554422 2123444344555555777788888888887632 112223333333
Q ss_pred HH---HhcCCHhHHHHHHHHHHHCCCCCCHH-HHH-HHHHH---HHhcCC------HHHHHHHHHHHHHCCCCC-CHHH-
Q 002664 760 GL---CRVRKFNKAFVFWQEMQKQGFKPNTI-TYT-TMISG---LAKAGN------ITEANGLFERFKENGGVP-DSAC- 823 (895)
Q Consensus 760 ~~---~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~-~l~~~---~~~~g~------~~~A~~~~~~~~~~~~~p-~~~~- 823 (895)
.+ .. .....|...++.+....+.|... ... .++.- ....++ ++...++++.+.+....| +..+
T Consensus 164 ~i~~l~~-~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~ 242 (278)
T PF08631_consen 164 HIKQLAE-KSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAA 242 (278)
T ss_pred HHHHHHh-hCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 33 22 23345556666555443444443 111 11111 111111 333434444333221222 3222
Q ss_pred --HH----HHHHHHHhcCCHHHHHHHHHHHH
Q 002664 824 --YN----AMMEGLSNANRAMDAYTLFEETR 848 (895)
Q Consensus 824 --~~----~l~~~~~~~g~~~~A~~~~~~~~ 848 (895)
.. .-+..+++.+++++|..+|+-.+
T Consensus 243 ~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 243 SAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 11 22344677788888888887544
|
It is also involved in sporulation []. |
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=95.24 E-value=4.4 Score=41.94 Aligned_cols=126 Identities=13% Similarity=0.124 Sum_probs=80.5
Q ss_pred HHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHH
Q 002664 376 CLGKKGRVTEAMKIFEAMKKDARPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEAGLFPNVMTVNIMVDRLCKAQKLDEA 455 (895)
Q Consensus 376 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 455 (895)
--...||+-.|-+-+....+..|.++.........+...|+++.+...+...... +.....+...+++...+.|++++|
T Consensus 298 k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 298 KQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred HHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHH
Confidence 3345567766666666666655666665555566667778888888777655432 223455677777788888888888
Q ss_pred HHHHHHhhhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCC
Q 002664 456 FSIFEGMDHKTCTPDAVTFCSLIDGLGKNGRVDDAYKFYEKMLDTDQI 503 (895)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 503 (895)
..+-+.|....+. ++.+.......-...|-++++.-.++++...+++
T Consensus 377 ~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 377 LSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred HHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 8888777766554 3333332333334556778888888888766554
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.23 E-value=2 Score=37.91 Aligned_cols=89 Identities=20% Similarity=0.207 Sum_probs=36.4
Q ss_pred HHHhcCCHhHHHHHHHHHhhCCCCCCHH-hHHHH--HHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 002664 306 VLCKSKRLEEAVAMFEQMDRNREVPCAY-AYNTM--IMGYGSVGKFDEAFSLFERLKQKGCIPSVIAYNSLLTCLGKKGR 382 (895)
Q Consensus 306 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l--~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 382 (895)
.....|+-..|...|+++-...+.|-.. -...| .-.+...|.++......+-+...+-+.-...-..|.-+-.+.|+
T Consensus 103 ~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd 182 (221)
T COG4649 103 LLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGD 182 (221)
T ss_pred HHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccc
Confidence 3444555555555555554443333222 01111 11223444454444444444333322222333344444445555
Q ss_pred HHHHHHHHHHHh
Q 002664 383 VTEAMKIFEAMK 394 (895)
Q Consensus 383 ~~~A~~~~~~~~ 394 (895)
+..|.+.|..+.
T Consensus 183 ~a~A~~~F~qia 194 (221)
T COG4649 183 FAKAKSWFVQIA 194 (221)
T ss_pred hHHHHHHHHHHH
Confidence 555555554443
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.12 E-value=2.6 Score=38.80 Aligned_cols=31 Identities=16% Similarity=0.191 Sum_probs=23.1
Q ss_pred hhhHHHHHHHHhhcCCHHHHHHHHHHHHhCC
Q 002664 471 AVTFCSLIDGLGKNGRVDDAYKFYEKMLDTD 501 (895)
Q Consensus 471 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 501 (895)
..||..++..+...|+.++|..+|+-++...
T Consensus 237 TEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 237 TETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 3467777778888888888888888777643
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.79 Score=41.36 Aligned_cols=95 Identities=18% Similarity=0.173 Sum_probs=71.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCH-----HHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC-HHHHHHHHHH
Q 002664 722 LLDALVKAEEISEAFVCFQSMKDLKCTPNH-----VTYSIIINGLCRVRKFNKAFVFWQEMQKQGFKPN-TITYTTMISG 795 (895)
Q Consensus 722 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~ 795 (895)
=++-+.+.|++++|..-|..++..- ++.. ..|..-.-++.+.+.++.|++-..+.++. .|+ .....--..+
T Consensus 101 EGN~~F~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel--~pty~kAl~RRAea 177 (271)
T KOG4234|consen 101 EGNELFKNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIEL--NPTYEKALERRAEA 177 (271)
T ss_pred HHHHhhhcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc--CchhHHHHHHHHHH
Confidence 4566788999999999999999843 3322 34555666788999999999999999874 453 2333344557
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCH
Q 002664 796 LAKAGNITEANGLFERFKENGGVPDS 821 (895)
Q Consensus 796 ~~~~g~~~~A~~~~~~~~~~~~~p~~ 821 (895)
|.+...+++|++-|+++++ ..|..
T Consensus 178 yek~ek~eealeDyKki~E--~dPs~ 201 (271)
T KOG4234|consen 178 YEKMEKYEEALEDYKKILE--SDPSR 201 (271)
T ss_pred HHhhhhHHHHHHHHHHHHH--hCcch
Confidence 8888999999999999999 66643
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.95 E-value=8 Score=43.35 Aligned_cols=176 Identities=13% Similarity=0.173 Sum_probs=93.9
Q ss_pred hhHHHHHHHHHHhCCCCCChHhHHHHHHH-----HHhcCChhhHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHhc
Q 002664 243 VDDALFLLDEMKNNAFSVDIVLYNVCIDC-----FGKVGKVDMAWKFFHEMKA-------QGVAPDDVTYTSMIGVLCKS 310 (895)
Q Consensus 243 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~g~~~~A~~~~~~~~~-------~g~~p~~~~~~~l~~~~~~~ 310 (895)
...|..+++...+.| +......++.+ +....+.+.|..+|+.+.+ .| .......+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 356677777666654 22222222222 3345667777777777765 44 233455566666653
Q ss_pred C-----CHhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHcc---CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh---
Q 002664 311 K-----RLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSV---GKFDEAFSLFERLKQKGCIPSVIAYNSLLTCLGK--- 379 (895)
Q Consensus 311 g-----~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~--- 379 (895)
. +.+.|..++.+....+.. +.... ++..|... .+...|.++|....+.| ....+..+..+|..
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g~~-~a~~~--lg~~~~~g~~~~d~~~A~~yy~~Aa~~G---~~~A~~~la~~y~~G~g 375 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELGNP-DAQYL--LGVLYETGTKERDYRRAFEYYSLAAKAG---HILAIYRLALCYELGLG 375 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcCCc-hHHHH--HHHHHHcCCccccHHHHHHHHHHHHHcC---ChHHHHHHHHHHHhCCC
Confidence 2 566788888877776643 33332 33333322 35678888888887776 33344444444432
Q ss_pred -cCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 002664 380 -KGRVTEAMKIFEAMKKDARPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEAG 431 (895)
Q Consensus 380 -~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 431 (895)
..+.+.|..++.+.-....+....-...+..+.. +.++.+...+..+.+.|
T Consensus 376 v~r~~~~A~~~~k~aA~~g~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 376 VERNLELAFAYYKKAAEKGNPSAAYLLGAFYEYGV-GRYDTALALYLYLAELG 427 (552)
T ss_pred cCCCHHHHHHHHHHHHHccChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence 2356677777776655443222222222222333 66666665555555544
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.89 E-value=3.5 Score=38.83 Aligned_cols=206 Identities=14% Similarity=0.131 Sum_probs=116.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHH
Q 002664 577 QSYSILIHGLVKAGFAHETDQLFYAMKKQGCVLDTRAYNTVVDGFCKSGKVNKAYQLLEEMKTKGHYPTVVTYGSVIDGL 656 (895)
Q Consensus 577 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 656 (895)
..|..-..+|...+++++|...+.+..+- ...+.. + |.....++.|.-+.+++.+- ..-+..|.-....|
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrs-l------fhAAKayEqaamLake~~kl--sEvvdl~eKAs~lY 101 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRS-L------FHAAKAYEQAAMLAKELSKL--SEVVDLYEKASELY 101 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhccc-H------HHHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHH
Confidence 34555666777888888888877666542 111111 1 22233456666666666553 11233455556667
Q ss_pred HccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC---C--CCCCHHHHHHHHHHHHhcCC
Q 002664 657 AKIDRLDEAYMLFEEAKSKGIELNTVIYSSLIDGFGKVGRIDEAYLIMEELMQK---G--LTPNAYTWNCLLDALVKAEE 731 (895)
Q Consensus 657 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~--~~p~~~~~~~l~~~~~~~g~ 731 (895)
...|.++.|...++++-+. ...-++++|+.+|++.... + ...-...+....+.+.+...
T Consensus 102 ~E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~k 165 (308)
T KOG1585|consen 102 VECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEK 165 (308)
T ss_pred HHhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHH
Confidence 7777777666666555432 1234556666666655431 0 00112234445567777778
Q ss_pred HHHHHHHHHHHHh----cCCCCCH-HHHHHHHHHHHhcCCHhHHHHHHHHHHHC-CC--CCCHHHHHHHHHHHHhcCCHH
Q 002664 732 ISEAFVCFQSMKD----LKCTPNH-VTYSIIINGLCRVRKFNKAFVFWQEMQKQ-GF--KPNTITYTTMISGLAKAGNIT 803 (895)
Q Consensus 732 ~~~A~~~~~~~~~----~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~--~p~~~~~~~l~~~~~~~g~~~ 803 (895)
+.+|-..+.+-.. ..--++. ..|-..|-.+....+|..|...++.-.+. ++ .-+..+...|+.+| ..|+.+
T Consensus 166 f~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E 244 (308)
T KOG1585|consen 166 FTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIE 244 (308)
T ss_pred hhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHH
Confidence 8877766665432 1111222 23445566677778999999999886654 22 12355777787766 678887
Q ss_pred HHHHHH
Q 002664 804 EANGLF 809 (895)
Q Consensus 804 ~A~~~~ 809 (895)
++.+++
T Consensus 245 ~~~kvl 250 (308)
T KOG1585|consen 245 EIKKVL 250 (308)
T ss_pred HHHHHH
Confidence 775543
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.75 E-value=0.88 Score=39.21 Aligned_cols=83 Identities=17% Similarity=0.096 Sum_probs=54.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 002664 369 AYNSLLTCLGKKGRVTEAMKIFEAMKKDARPN---NTTYNVLIDMLCKAGNFEDALKFRDAMKEAGLFPNVMTVNIMVDR 445 (895)
Q Consensus 369 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 445 (895)
.+..-+....+.|++++|++.|+.+....|.. ..+...++.+|.+.+++++|...+++.++.........|...+.+
T Consensus 12 ~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~g 91 (142)
T PF13512_consen 12 ELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRG 91 (142)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHH
Confidence 34444555667778888888888877665543 446667788888888888888888888776533333445555555
Q ss_pred HHhcCC
Q 002664 446 LCKAQK 451 (895)
Q Consensus 446 ~~~~g~ 451 (895)
++....
T Consensus 92 L~~~~~ 97 (142)
T PF13512_consen 92 LSYYEQ 97 (142)
T ss_pred HHHHHH
Confidence 554433
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.61 E-value=0.045 Score=33.88 Aligned_cols=30 Identities=20% Similarity=0.220 Sum_probs=16.6
Q ss_pred HHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHH
Q 002664 810 ERFKENGGVP-DSACYNAMMEGLSNANRAMDAY 841 (895)
Q Consensus 810 ~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~ 841 (895)
+++++ ..| ++..|..|+..|...|++++|+
T Consensus 3 ~kAie--~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 3 KKAIE--LNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHH--HCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 44444 444 4555666666666666665554
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.34 E-value=2.9 Score=36.77 Aligned_cols=84 Identities=12% Similarity=0.175 Sum_probs=41.4
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 002664 686 SLIDGFGKVGRIDEAYLIMEELMQKGLTPNAYTWNCLLDALVKAEEISEAFVCFQSMKDLKCTPNHVTYSIIINGLCRVR 765 (895)
Q Consensus 686 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 765 (895)
.++..+...+.......+++.+...+ ..+....+.++..|++.+ ..+.++.++. .++......++..|.+.+
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~ 83 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAK 83 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcC
Confidence 34444555555666666666665544 235555555666655442 2333333331 112222334555555566
Q ss_pred CHhHHHHHHHHH
Q 002664 766 KFNKAFVFWQEM 777 (895)
Q Consensus 766 ~~~~A~~~~~~~ 777 (895)
.++++.-++.++
T Consensus 84 l~~~~~~l~~k~ 95 (140)
T smart00299 84 LYEEAVELYKKD 95 (140)
T ss_pred cHHHHHHHHHhh
Confidence 666666665554
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.31 E-value=3.5 Score=36.30 Aligned_cols=40 Identities=10% Similarity=0.170 Sum_probs=15.6
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 002664 268 CIDCFGKVGKVDMAWKFFHEMKAQGVAPDDVTYTSMIGVLC 308 (895)
Q Consensus 268 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~ 308 (895)
++..+...+.......+++.+...+. .+...++.++..|+
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~ 52 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYA 52 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHH
Confidence 33333333444444444444443331 23333444444443
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.25 E-value=1.2 Score=47.55 Aligned_cols=128 Identities=19% Similarity=0.181 Sum_probs=60.8
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 002664 649 YGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNTVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNAYTWNCLLDALVK 728 (895)
Q Consensus 649 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 728 (895)
...++.-+.+.|..+.|+++-+ |+.+ --....+.|+++.|.++.++ .++...|..|+.....
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~---------D~~~---rFeLAl~lg~L~~A~~~a~~------~~~~~~W~~Lg~~AL~ 359 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVT---------DPDH---RFELALQLGNLDIALEIAKE------LDDPEKWKQLGDEALR 359 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS----------HHH---HHHHHHHCT-HHHHHHHCCC------CSTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHhhcC---------ChHH---HhHHHHhcCCHHHHHHHHHh------cCcHHHHHHHHHHHHH
Confidence 4455555555666666655432 1111 11223445666666555432 1355566666666666
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 002664 729 AEEISEAFVCFQSMKDLKCTPNHVTYSIIINGLCRVRKFNKAFVFWQEMQKQGFKPNTITYTTMISGLAKAGNITEANGL 808 (895)
Q Consensus 729 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 808 (895)
+|+++-|.+.|++..+ +..|+-.|...|+.+.-.++.+.....| -++....++.-.|+.++.+++
T Consensus 360 ~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~n~af~~~~~lgd~~~cv~l 424 (443)
T PF04053_consen 360 QGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG------DINIAFQAALLLGDVEECVDL 424 (443)
T ss_dssp TTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHH
T ss_pred cCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc------CHHHHHHHHHHcCCHHHHHHH
Confidence 6666666666665543 3445555555666555555555444433 122233333344555555544
Q ss_pred H
Q 002664 809 F 809 (895)
Q Consensus 809 ~ 809 (895)
+
T Consensus 425 L 425 (443)
T PF04053_consen 425 L 425 (443)
T ss_dssp H
T ss_pred H
Confidence 4
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.06 E-value=1.6 Score=46.83 Aligned_cols=20 Identities=30% Similarity=0.283 Sum_probs=8.9
Q ss_pred HHHHHHHHHhcCCHHHHHHH
Q 002664 370 YNSLLTCLGKKGRVTEAMKI 389 (895)
Q Consensus 370 ~~~l~~~~~~~g~~~~A~~~ 389 (895)
.+.++..+.+.|..+.|+++
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~ 317 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQF 317 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHhh
Confidence 44444444444444444444
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=93.83 E-value=1.4 Score=37.50 Aligned_cols=78 Identities=14% Similarity=0.212 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhC---------------CCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHC-
Q 002664 228 HLFTTLIRVFAREGRVDDALFLLDEMKNN---------------AFSVDIVLYNVCIDCFGKVGKVDMAWKFFHEMKAQ- 291 (895)
Q Consensus 228 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 291 (895)
.++..++.++++.|+.+....+++..-.. ...|+..+..+++.+|+..|++..|.++.+...+.
T Consensus 3 ~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y 82 (126)
T PF12921_consen 3 ELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKY 82 (126)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHc
Confidence 34455555555555555555555443211 12244444444555555555555555554444433
Q ss_pred CCCCCHHHHHHHHH
Q 002664 292 GVAPDDVTYTSMIG 305 (895)
Q Consensus 292 g~~p~~~~~~~l~~ 305 (895)
+++-+..+|..|+.
T Consensus 83 ~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 83 PIPIPKEFWRRLLE 96 (126)
T ss_pred CCCCCHHHHHHHHH
Confidence 33333444444444
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.81 E-value=10 Score=39.95 Aligned_cols=100 Identities=14% Similarity=0.154 Sum_probs=66.3
Q ss_pred CCCHHHHH-HHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHC-CCCCCHHH
Q 002664 748 TPNHVTYS-IIINGLCRVRKFNKAFVFWQEMQKQGFKPNTITYTTMISG--LAKAGNITEANGLFERFKEN-GGVPDSAC 823 (895)
Q Consensus 748 ~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~-~~~p~~~~ 823 (895)
.|+..++. .+++.+.+.|-+.+|...+..+... .+|+...|..++.. -....++.-+.++|+.+... | -|+..
T Consensus 456 ~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg--~d~~l 532 (568)
T KOG2396|consen 456 GADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG--ADSDL 532 (568)
T ss_pred CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC--CChHH
Confidence 45555543 5677777788888888888888764 34566677777664 22233477788888887764 4 46677
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 002664 824 YNAMMEGLSNANRAMDAYTLFEETRRK 850 (895)
Q Consensus 824 ~~~l~~~~~~~g~~~~A~~~~~~~~~~ 850 (895)
|......-...|..+.+-.++.++.+.
T Consensus 533 w~~y~~~e~~~g~~en~~~~~~ra~kt 559 (568)
T KOG2396|consen 533 WMDYMKEELPLGRPENCGQIYWRAMKT 559 (568)
T ss_pred HHHHHHhhccCCCcccccHHHHHHHHh
Confidence 776666666777777777666665443
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.75 E-value=2.1 Score=38.81 Aligned_cols=129 Identities=9% Similarity=0.033 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHH--HHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHH-----
Q 002664 716 AYTWNCLLDALVKAEEISEAFVCFQSMKDLKCTPNHVTYS--IIINGLCRVRKFNKAFVFWQEMQKQGFKPNTIT----- 788 (895)
Q Consensus 716 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~----- 788 (895)
...|..++...- .+.. +.....+++...........+. .+...+...+++++|...++..... |....
T Consensus 54 S~~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~ 128 (207)
T COG2976 54 SAQYQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALA 128 (207)
T ss_pred HHHHHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHH
Confidence 344555544432 2333 4444455555422111112222 2345567778888888887777642 22222
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 002664 789 YTTMISGLAKAGNITEANGLFERFKENGGVPDSACYNAMMEGLSNANRAMDAYTLFEETRRKG 851 (895)
Q Consensus 789 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 851 (895)
---|.+.....|.+++|+..++...+.+. .+.....-++++...|+.++|+.-|++.+..+
T Consensus 129 ~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 129 ALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 23344556777888888887777665332 23334455677888888888888888887774
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=93.63 E-value=1.4 Score=37.62 Aligned_cols=29 Identities=14% Similarity=0.153 Sum_probs=19.6
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 002664 750 NHVTYSIIINGLCRVRKFNKAFVFWQEMQ 778 (895)
Q Consensus 750 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 778 (895)
|..++..++.++++.|+.+....+++..-
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~W 29 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVW 29 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhc
Confidence 34566677777777777777777766554
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=93.60 E-value=0.15 Score=32.10 Aligned_cols=26 Identities=12% Similarity=0.083 Sum_probs=18.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002664 823 CYNAMMEGLSNANRAMDAYTLFEETR 848 (895)
Q Consensus 823 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 848 (895)
+|..|+..|.+.|++++|+.+|++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35677777888888888888877754
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=93.32 E-value=18 Score=41.25 Aligned_cols=51 Identities=16% Similarity=0.142 Sum_probs=25.6
Q ss_pred cCCHHHHHHHHHHHHHC----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 002664 694 VGRIDEAYLIMEELMQK----GLTPNAYTWNCLLDALVKAEEISEAFVCFQSMKD 744 (895)
Q Consensus 694 ~g~~~~A~~~~~~~~~~----~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 744 (895)
.|++++|.++.+..+.. -..+....+..+..+..-.|++++|..+..+..+
T Consensus 471 ~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~ 525 (894)
T COG2909 471 RGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQ 525 (894)
T ss_pred cCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHH
Confidence 45556665555555442 1112344444455555555666666555555443
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=93.23 E-value=4.5 Score=34.03 Aligned_cols=62 Identities=26% Similarity=0.306 Sum_probs=31.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 002664 371 NSLLTCLGKKGRVTEAMKIFEAMKKDARPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEAGL 432 (895)
Q Consensus 371 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 432 (895)
..-+..+.+.|+-+.-.+++..+.+...+++.....++.+|.+.|+..++.+++.++-+.|+
T Consensus 90 D~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 90 DLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 33444455555555555565555555555666666666666666666666666666666554
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.16 E-value=6.6 Score=35.79 Aligned_cols=116 Identities=15% Similarity=0.087 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHCCCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH--HHHHHHHHHHHhcCCHhHHHHHH
Q 002664 699 EAYLIMEELMQKGLTPNAYTWN--CLLDALVKAEEISEAFVCFQSMKDLKCTPNH--VTYSIIINGLCRVRKFNKAFVFW 774 (895)
Q Consensus 699 ~A~~~~~~~~~~~~~p~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~ 774 (895)
+.....+++........-.++. .+...+...+++++|...++..+......+. .+-..|.......|.+++|+..+
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L 149 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTL 149 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 4455555665532121222222 3456788899999999999988862211111 12225667788999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 002664 775 QEMQKQGFKPNTITYTTMISGLAKAGNITEANGLFERFKENG 816 (895)
Q Consensus 775 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 816 (895)
+...+.++ .......-+..+...|+-++|+..|++.++.+
T Consensus 150 ~t~~~~~w--~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 150 DTIKEESW--AAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred hccccccH--HHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 88765432 22334445667999999999999999999864
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.11 E-value=0.096 Score=32.39 Aligned_cols=32 Identities=22% Similarity=0.462 Sum_probs=21.7
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 002664 390 FEAMKKDARPNNTTYNVLIDMLCKAGNFEDAL 421 (895)
Q Consensus 390 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 421 (895)
|++..+..|.+..+|+.++.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 34455556777777777777777777777764
|
|
| >KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.10 E-value=17 Score=40.32 Aligned_cols=120 Identities=16% Similarity=0.130 Sum_probs=53.8
Q ss_pred HHccCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHh
Q 002664 691 FGKVGRIDEAYLIMEELMQKGLTPNAY--TWNCLLDALVKAEEISEAFVCFQSMKDLKCTPNHVTYSIIINGLCRVRKFN 768 (895)
Q Consensus 691 ~~~~g~~~~A~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 768 (895)
+..-|+.++|..+.+++.... .|-.. -..+++.+|+-.|+.....+++.-... +...|..-+..+.-++.-..+++
T Consensus 511 L~~ygrqe~Ad~lI~el~~dk-dpilR~~Gm~t~alAy~GTgnnkair~lLh~aVs-D~nDDVrRaAVialGFVl~~dp~ 588 (929)
T KOG2062|consen 511 LVVYGRQEDADPLIKELLRDK-DPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVS-DVNDDVRRAAVIALGFVLFRDPE 588 (929)
T ss_pred HHHhhhhhhhHHHHHHHhcCC-chhhhhhhHHHHHHHHhccCchhhHHHhhccccc-ccchHHHHHHHHHheeeEecChh
Confidence 334455556666666665532 12110 112344455566665544444443333 22333333333333444445555
Q ss_pred HHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002664 769 KAFVFWQEMQKQGFKPNTI--TYTTMISGLAKAGNITEANGLFERFKE 814 (895)
Q Consensus 769 ~A~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~ 814 (895)
....+..-+.+. +.|... +--.|+-+|.-.|+ .+|+.+++-|..
T Consensus 589 ~~~s~V~lLses-~N~HVRyGaA~ALGIaCAGtG~-~eAi~lLepl~~ 634 (929)
T KOG2062|consen 589 QLPSTVSLLSES-YNPHVRYGAAMALGIACAGTGL-KEAINLLEPLTS 634 (929)
T ss_pred hchHHHHHHhhh-cChhhhhhHHHHHhhhhcCCCc-HHHHHHHhhhhc
Confidence 555555544443 333332 22233333443443 556666666654
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=93.09 E-value=34 Score=43.81 Aligned_cols=321 Identities=10% Similarity=0.032 Sum_probs=169.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCC--CCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 002664 511 SLIRNFFKHGRKEDGHKIYKEMVQRGC--SPDLMLLNTYMDCVFKAGETEKGRALFEEIKAQGFVPDVQSYSILIHGLVK 588 (895)
Q Consensus 511 ~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 588 (895)
.+..+-.+.+.+..|...++.-..... ......+..+...|...++++....+...-.. .|+. ...+-....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~~sl---~~qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA---DPSL---YQQILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---CccH---HHHHHHHHh
Confidence 456667788889999888887411100 11122333444488888888888777664111 2222 223444667
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHhHHH-HHHHHHccCCHHHHHH
Q 002664 589 AGFAHETDQLFYAMKKQGCVLDTRAYNTVVDGFCKSGKVNKAYQLLEEMKTKGHYPTVVTYGS-VIDGLAKIDRLDEAYM 667 (895)
Q Consensus 589 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~-l~~~~~~~~~~~~A~~ 667 (895)
.|++..|...|+.+.+.+ ++...+++.++......|.++..+-..+-..... .+....++. -+.+-.+.++++....
T Consensus 1462 ~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~ 1539 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLES 1539 (2382)
T ss_pred hccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhh
Confidence 899999999999999875 3447778888888888888888877666555431 222223322 2333366677776666
Q ss_pred HHHHHHHcCCCcCHHHHHH--HHHHHHcc--CCHHHHHHHHHHHHHCCCCC---------CHHHHHHHHHHHHhcCCHHH
Q 002664 668 LFEEAKSKGIELNTVIYSS--LIDGFGKV--GRIDEAYLIMEELMQKGLTP---------NAYTWNCLLDALVKAEEISE 734 (895)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~~--l~~~~~~~--g~~~~A~~~~~~~~~~~~~p---------~~~~~~~l~~~~~~~g~~~~ 734 (895)
.+. .. +...|.. ++....+. .+.-.-.+..+.+.+.-+.| -...|..++..+.... .+.
T Consensus 1540 ~l~---~~----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~e-l~~ 1611 (2382)
T KOG0890|consen 1540 YLS---DR----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLE-LEN 1611 (2382)
T ss_pred hhh---cc----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHH-HHH
Confidence 554 11 1122222 22222221 12111112222222210111 1123333333332211 111
Q ss_pred HHHHHHHHHh-cCCCCCHHHHHHHHHHHHhcCCHhHHHHHHH----HHHHCCCCCC-----HHHHHHHHHHHHhcCCHHH
Q 002664 735 AFVCFQSMKD-LKCTPNHVTYSIIINGLCRVRKFNKAFVFWQ----EMQKQGFKPN-----TITYTTMISGLAKAGNITE 804 (895)
Q Consensus 735 A~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~----~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~ 804 (895)
-.+....... .....+..-|-.-+. +.+....+.+-.- .+......|+ ..+|-...+.....|.++.
T Consensus 1612 ~~~~l~~~s~~~~s~~~sd~W~~Rl~---~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~ 1688 (2382)
T KOG0890|consen 1612 SIEELKKVSYDEDSANNSDNWKNRLE---RTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQR 1688 (2382)
T ss_pred HHHHhhccCccccccccchhHHHHHH---HhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHH
Confidence 1111111110 001111111211111 1122222222222 2222112222 4588888888888999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 002664 805 ANGLFERFKENGGVPDSACYNAMMEGLSNANRAMDAYTLFEETRRKGFN 853 (895)
Q Consensus 805 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 853 (895)
|...+-++.+.+ -+..+...+.-+...|+...|+.++++.+++..+
T Consensus 1689 A~nall~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~ 1734 (2382)
T KOG0890|consen 1689 AQNALLNAKESR---LPEIVLERAKLLWQTGDELNALSVLQEILSKNFP 1734 (2382)
T ss_pred HHHHHHhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcc
Confidence 999888888754 3456778888999999999999999999877543
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=92.60 E-value=5.6 Score=33.49 Aligned_cols=137 Identities=12% Similarity=0.189 Sum_probs=64.2
Q ss_pred ccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHhcCCHHHHHH
Q 002664 344 SVGKFDEAFSLFERLKQKGCIPSVIAYNSLLTCLGKKGRVTEAMKIFEAMKKDARPNN-TTYNVLIDMLCKAGNFEDALK 422 (895)
Q Consensus 344 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~ 422 (895)
-.|.+++..++..+.... .+..-++.+|.-....-+-+-..++++.+-+.+.-+. .-...++.+|...|.
T Consensus 14 ldG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~NlKrVi~C~~~~n~------ 84 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCGNLKRVIECYAKRNK------ 84 (161)
T ss_dssp HTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S-THHHHHHHHHTT-------
T ss_pred HhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCchhhcchHHHHHHHHHhcc------
Confidence 456667777777776664 2555666666555555555555555555433211110 011122222222221
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCC
Q 002664 423 FRDAMKEAGLFPNVMTVNIMVDRLCKAQKLDEAFSIFEGMDHKTCTPDAVTFCSLIDGLGKNGRVDDAYKFYEKMLDTDQ 502 (895)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 502 (895)
+.......+..+...|+-|.-.+++..+.+. -.+++.....++.+|.+.|+..++.+++.++-+.|.
T Consensus 85 ------------~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 85 ------------LSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp --------------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred ------------hHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 2223344455556666666666666665542 244556666666666666666666666666666654
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.42 E-value=21 Score=39.66 Aligned_cols=125 Identities=10% Similarity=-0.019 Sum_probs=80.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH--HHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 002664 721 CLLDALVKAEEISEAFVCFQSMKDLKCTPNH--VTYSIIINGLCRVRKFNKAFVFWQEMQKQGFKPNTITYTTMISGLAK 798 (895)
Q Consensus 721 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 798 (895)
.+.-++..-|+.++|..+.++|.... .|-. .-..+++.+|+..|+..-..+++.-.+.. ...|..-+....-++.-
T Consensus 506 ~vGiaL~~ygrqe~Ad~lI~el~~dk-dpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD-~nDDVrRaAVialGFVl 583 (929)
T KOG2062|consen 506 AVGIALVVYGRQEDADPLIKELLRDK-DPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSD-VNDDVRRAAVIALGFVL 583 (929)
T ss_pred HHhHHHHHhhhhhhhHHHHHHHhcCC-chhhhhhhHHHHHHHHhccCchhhHHHhhcccccc-cchHHHHHHHHHheeeE
Confidence 45556777888899999999998733 2322 12335667888899887777777665532 22233333333334555
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHH--HHHHHHhcCCHHHHHHHHHHHHH
Q 002664 799 AGNITEANGLFERFKENGGVPDSACYNA--MMEGLSNANRAMDAYTLFEETRR 849 (895)
Q Consensus 799 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~--l~~~~~~~g~~~~A~~~~~~~~~ 849 (895)
..+.+....+.+-+.+. ++|....-.+ |+-+|.-.|+. +|+.+++-|..
T Consensus 584 ~~dp~~~~s~V~lLses-~N~HVRyGaA~ALGIaCAGtG~~-eAi~lLepl~~ 634 (929)
T KOG2062|consen 584 FRDPEQLPSTVSLLSES-YNPHVRYGAAMALGIACAGTGLK-EAINLLEPLTS 634 (929)
T ss_pred ecChhhchHHHHHHhhh-cChhhhhhHHHHHhhhhcCCCcH-HHHHHHhhhhc
Confidence 67888888888777664 7776554444 44445555654 69999998865
|
|
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.09 E-value=15 Score=37.31 Aligned_cols=83 Identities=13% Similarity=0.033 Sum_probs=38.3
Q ss_pred ccCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHH----ccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHc----c
Q 002664 623 KSGKVNKAYQLLEEMKTKGHYPTVVTYGSVIDGLA----KIDRLDEAYMLFEEAKSKGIELNTVIYSSLIDGFGK----V 694 (895)
Q Consensus 623 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~----~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~ 694 (895)
..+++..+...+......+ +......+...|. ...+..+|..+|+.+.+.|. ......|...|.. .
T Consensus 53 ~~~~~~~a~~~~~~a~~~~---~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~---~~a~~~lg~~~~~G~gv~ 126 (292)
T COG0790 53 YPPDYAKALKSYEKAAELG---DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGL---AEALFNLGLMYANGRGVP 126 (292)
T ss_pred ccccHHHHHHHHHHhhhcC---ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhccc---HHHHHhHHHHHhcCCCcc
Confidence 4456666666666665532 1122222333332 22345556666665554442 2222233333333 2
Q ss_pred CCHHHHHHHHHHHHHCC
Q 002664 695 GRIDEAYLIMEELMQKG 711 (895)
Q Consensus 695 g~~~~A~~~~~~~~~~~ 711 (895)
.+..+|...|+++.+.|
T Consensus 127 ~d~~~A~~~~~~Aa~~g 143 (292)
T COG0790 127 LDLVKALKYYEKAAKLG 143 (292)
T ss_pred cCHHHHHHHHHHHHHcC
Confidence 24555555555555544
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=91.95 E-value=1.1 Score=43.89 Aligned_cols=95 Identities=17% Similarity=0.087 Sum_probs=65.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 002664 722 LLDALVKAEEISEAFVCFQSMKDLKCTPNHVTYSIIINGLCRVRKFNKAFVFWQEMQKQGFKPNTITYTTMISGLAKAGN 801 (895)
Q Consensus 722 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 801 (895)
-++-|.++|.+++|+.+|.+.+... +.+.+++..-..+|.+.+++..|..-...++..+ .--...|.--+.+-...|+
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhh
Confidence 4667888888888888888877633 2277777777888888888888887777766421 0012345445555555677
Q ss_pred HHHHHHHHHHHHHCCCCCC
Q 002664 802 ITEANGLFERFKENGGVPD 820 (895)
Q Consensus 802 ~~~A~~~~~~~~~~~~~p~ 820 (895)
..+|.+-++..++ ..|+
T Consensus 181 ~~EAKkD~E~vL~--LEP~ 197 (536)
T KOG4648|consen 181 NMEAKKDCETVLA--LEPK 197 (536)
T ss_pred HHHHHHhHHHHHh--hCcc
Confidence 7777777777777 6665
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.83 E-value=1.8 Score=42.42 Aligned_cols=61 Identities=8% Similarity=0.145 Sum_probs=32.8
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002664 753 TYSIIINGLCRVRKFNKAFVFWQEMQKQGFKPNTITYTTMISGLAKAGNITEANGLFERFKE 814 (895)
Q Consensus 753 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 814 (895)
++..++..+...|+++.+.+.++++.+. -+-+...|..++.+|.+.|+...|+..|+++.+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~-dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIEL-DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhc-CccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 3444555555555555555555555543 123445555555555555555555555555543
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=91.68 E-value=6 Score=35.00 Aligned_cols=19 Identities=21% Similarity=0.295 Sum_probs=9.4
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 002664 796 LAKAGNITEANGLFERFKE 814 (895)
Q Consensus 796 ~~~~g~~~~A~~~~~~~~~ 814 (895)
+...|++.+|+.+++.+.+
T Consensus 54 ~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 54 HIVRGDWDDALRLLRELEE 72 (160)
T ss_pred HHHhCCHHHHHHHHHHHhc
Confidence 3444555555555555443
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=91.66 E-value=0.89 Score=44.61 Aligned_cols=55 Identities=15% Similarity=0.027 Sum_probs=32.8
Q ss_pred HHHHhcCCHhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 002664 305 GVLCKSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLFERLKQ 360 (895)
Q Consensus 305 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 360 (895)
+-|+++|.|++|+++|.......+. +.+++..-..+|.+...+..|+.-...++.
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~P~-NpV~~~NRA~AYlk~K~FA~AE~DC~~Aia 159 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVYPH-NPVYHINRALAYLKQKSFAQAEEDCEAAIA 159 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccCCC-CccchhhHHHHHHHHHHHHHHHHhHHHHHH
Confidence 3456666666666666666555443 555666666666666666666555555544
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.59 E-value=1.4 Score=42.13 Aligned_cols=31 Identities=23% Similarity=0.354 Sum_probs=17.4
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 002664 281 AWKFFHEMKAQGVAPDDVTYTSMIGVLCKSK 311 (895)
Q Consensus 281 A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g 311 (895)
+++++++|...|+.||..+-..|++++.+.+
T Consensus 142 ~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~ 172 (406)
T KOG3941|consen 142 AIKVLEQMEWHGVMPDKEIEDILVNAFGRWN 172 (406)
T ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHhcccc
Confidence 4555555555555555555555555554443
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.50 E-value=13 Score=35.48 Aligned_cols=188 Identities=13% Similarity=0.111 Sum_probs=104.5
Q ss_pred cCChHHHHHHHHHHHHcCCCCC---HHhHHHHHHHHHccCChHHHHHHHHHHHHC---CC--CCCHHhHHHHHHHHHccC
Q 002664 589 AGFAHETDQLFYAMKKQGCVLD---TRAYNTVVDGFCKSGKVNKAYQLLEEMKTK---GH--YPTVVTYGSVIDGLAKID 660 (895)
Q Consensus 589 ~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~--~p~~~~~~~l~~~~~~~~ 660 (895)
...+++|..-|++.++...... -.+...++....+.+++++-...+.+++.- .+ .-+....+++++......
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 3478888888888887532222 344556778888888888888888877532 11 123445566666555555
Q ss_pred CHHHHHHHHHHHHHc--CCCcCHH----HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC----CH-------HHHHHHH
Q 002664 661 RLDEAYMLFEEAKSK--GIELNTV----IYSSLIDGFGKVGRIDEAYLIMEELMQKGLTP----NA-------YTWNCLL 723 (895)
Q Consensus 661 ~~~~A~~~~~~~~~~--~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p----~~-------~~~~~l~ 723 (895)
+.+--.+.++..++. +.. +.. +-..|...|...|.+..-.+++.++....... |. ..|..=+
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAK-NeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEI 198 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAK-NERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEI 198 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhh-cceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHh
Confidence 666555555544332 001 111 22456667777777777777777776642221 11 2344445
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcC-CCCCHHHHHHHH----HHHHhcCCHhHHHHHHHHH
Q 002664 724 DALVKAEEISEAFVCFQSMKDLK-CTPNHVTYSIII----NGLCRVRKFNKAFVFWQEM 777 (895)
Q Consensus 724 ~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~l~----~~~~~~g~~~~A~~~~~~~ 777 (895)
..|-.+.+-.+-..+|++.+... --|.+.....+- ....+.|++++|-.-|-++
T Consensus 199 QmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEA 257 (440)
T KOG1464|consen 199 QMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEA 257 (440)
T ss_pred hhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHH
Confidence 55666666666667777665421 123332222221 1234567777776444333
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=91.49 E-value=0.48 Score=29.21 Aligned_cols=26 Identities=23% Similarity=0.322 Sum_probs=10.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002664 789 YTTMISGLAKAGNITEANGLFERFKE 814 (895)
Q Consensus 789 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 814 (895)
|..++.++...|++++|+..++++++
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 33444444444444444444444443
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=91.47 E-value=0.46 Score=29.84 Aligned_cols=27 Identities=11% Similarity=0.122 Sum_probs=20.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002664 788 TYTTMISGLAKAGNITEANGLFERFKE 814 (895)
Q Consensus 788 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 814 (895)
+|..|...|.+.|++++|++++++.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 467788888888888888888888554
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=91.42 E-value=7.1 Score=35.89 Aligned_cols=62 Identities=16% Similarity=0.177 Sum_probs=37.6
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCC--HHhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 002664 299 TYTSMIGVLCKSKRLEEAVAMFEQMDRNREVPC--AYAYNTMIMGYGSVGKFDEAFSLFERLKQ 360 (895)
Q Consensus 299 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 360 (895)
.+..++..|++.|+++.|++.|.++......+. ...+..+++.....+++..+.....++..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 455666667777777777777776655433222 33455566666666676666666665544
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=91.29 E-value=17 Score=36.39 Aligned_cols=233 Identities=11% Similarity=0.070 Sum_probs=131.2
Q ss_pred CCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCCH----HHHHHHHHHHHHcCCCcCHHHH
Q 002664 609 LDTRAYNTVVDGFCKSGKVNKAYQLLEEMKTKGHYPTVVTYGSVIDGLAKIDRL----DEAYMLFEEAKSKGIELNTVIY 684 (895)
Q Consensus 609 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~----~~A~~~~~~~~~~~~~~~~~~~ 684 (895)
+|.......+.++...|. +++...+..+... ++...-...+.++...|+. +++...+..+... .++..+-
T Consensus 35 ~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR 108 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGG-QDVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVR 108 (280)
T ss_pred CCHHHHHHHHHHHHhcCc-chHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHH
Confidence 455555556666665554 3333444444332 3555555566666666653 4566666665433 3455555
Q ss_pred HHHHHHHHccCC-----HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 002664 685 SSLIDGFGKVGR-----IDEAYLIMEELMQKGLTPNAYTWNCLLDALVKAEEISEAFVCFQSMKDLKCTPNHVTYSIIIN 759 (895)
Q Consensus 685 ~~l~~~~~~~g~-----~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 759 (895)
...+.++...+. ...+...+..+.. .++..+-...+.++.+.++ ++|+..+-.+++ .++...-...+.
T Consensus 109 ~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~~A~~ 181 (280)
T PRK09687 109 ASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLK---DPNGDVRNWAAF 181 (280)
T ss_pred HHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhc---CCCHHHHHHHHH
Confidence 555555544432 1223333333332 2355555566677776666 567777777775 244444444444
Q ss_pred HHHhcC-CHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 002664 760 GLCRVR-KFNKAFVFWQEMQKQGFKPNTITYTTMISGLAKAGNITEANGLFERFKENGGVPDSACYNAMMEGLSNANRAM 838 (895)
Q Consensus 760 ~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 838 (895)
++...+ ....+...+..+.. .++..+-...+.++.+.|+ ..|+..+-+.++.+ + .....+.++...|..
T Consensus 182 aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~- 251 (280)
T PRK09687 182 ALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK- 251 (280)
T ss_pred HHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-
Confidence 555442 24466666766663 4567777777778878777 56777777776632 2 234566777777775
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 002664 839 DAYTLFEETRRKGFNIHTKTCVILLDAL 866 (895)
Q Consensus 839 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 866 (895)
+|+..+.++... .+|..+......++
T Consensus 252 ~a~p~L~~l~~~--~~d~~v~~~a~~a~ 277 (280)
T PRK09687 252 TLLPVLDTLLYK--FDDNEIITKAIDKL 277 (280)
T ss_pred hHHHHHHHHHhh--CCChhHHHHHHHHH
Confidence 688888888775 33555444444333
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=91.03 E-value=0.55 Score=28.83 Aligned_cols=26 Identities=12% Similarity=0.143 Sum_probs=11.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002664 824 YNAMMEGLSNANRAMDAYTLFEETRR 849 (895)
Q Consensus 824 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 849 (895)
+..++..+...|++++|++.+++.++
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 44444444444444444444444443
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.02 E-value=2.2 Score=41.93 Aligned_cols=77 Identities=17% Similarity=0.197 Sum_probs=47.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCChhhHHHHH
Q 002664 369 AYNSLLTCLGKKGRVTEAMKIFEAMKKDARPNNTTYNVLIDMLCKAGNFEDALKFRDAMKE-----AGLFPNVMTVNIMV 443 (895)
Q Consensus 369 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~~l~ 443 (895)
++..++..+...|+++.+...++++....|-+...|..++.+|.+.|+...|+..|+++.+ .|+.|...+.....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~ 234 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYE 234 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHH
Confidence 4555555566666666666666666666666666666666666666666666666665543 56777666555444
Q ss_pred HH
Q 002664 444 DR 445 (895)
Q Consensus 444 ~~ 445 (895)
..
T Consensus 235 ~~ 236 (280)
T COG3629 235 EI 236 (280)
T ss_pred HH
Confidence 43
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=91.00 E-value=2.8 Score=38.47 Aligned_cols=62 Identities=15% Similarity=0.209 Sum_probs=34.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH--HHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 002664 718 TWNCLLDALVKAEEISEAFVCFQSMKDLKCTPNH--VTYSIIINGLCRVRKFNKAFVFWQEMQK 779 (895)
Q Consensus 718 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 779 (895)
.+..++..|++.|+.+.|++.|.++.+....+.. ..+..++......+++..+...+.++..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3445566666666666666666666654333322 3344555566666666666666555543
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.91 E-value=14 Score=34.72 Aligned_cols=96 Identities=9% Similarity=0.224 Sum_probs=51.4
Q ss_pred HHHHHHhc-CCHHHHHHHHHHHHhc--CCCCCH---HHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHH---HH
Q 002664 722 LLDALVKA-EEISEAFVCFQSMKDL--KCTPNH---VTYSIIINGLCRVRKFNKAFVFWQEMQKQGFKPNTITYT---TM 792 (895)
Q Consensus 722 l~~~~~~~-g~~~~A~~~~~~~~~~--~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~---~l 792 (895)
++..|... .++++|+..|++.-+. +-..+. ..+.-....-...++|.+|+.+|++.....+..+.--|. .+
T Consensus 119 iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~Kdyf 198 (288)
T KOG1586|consen 119 IAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYF 198 (288)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHH
Confidence 34444433 5677777777776541 111111 112223333456688899999999887764443332222 12
Q ss_pred HH---HHHhcCCHHHHHHHHHHHHHCCCCC
Q 002664 793 IS---GLAKAGNITEANGLFERFKENGGVP 819 (895)
Q Consensus 793 ~~---~~~~~g~~~~A~~~~~~~~~~~~~p 819 (895)
+. ++.-.++.-.+...+++..+ ..|
T Consensus 199 lkAgLChl~~~D~v~a~~ALeky~~--~dP 226 (288)
T KOG1586|consen 199 LKAGLCHLCKADEVNAQRALEKYQE--LDP 226 (288)
T ss_pred HHHHHHhHhcccHHHHHHHHHHHHh--cCC
Confidence 22 22233566667777777776 556
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=90.89 E-value=11 Score=33.50 Aligned_cols=51 Identities=16% Similarity=0.160 Sum_probs=26.2
Q ss_pred hcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002664 379 KKGRVTEAMKIFEAMKKDARPNNTTYNVLIDMLCKAGNFEDALKFRDAMKE 429 (895)
Q Consensus 379 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 429 (895)
+.++.+++..++..+.-..|.....-..-+..+...|+|.+|..+|+++.+
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 444555555555555444444444444444555555555555555555544
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=90.68 E-value=24 Score=37.00 Aligned_cols=62 Identities=11% Similarity=0.106 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhcCC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002664 368 IAYNSLLTCLGKKGRVTEAMKIFEAMKKDA----RPNNTTYNVLIDMLCKAGNFEDALKFRDAMKE 429 (895)
Q Consensus 368 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 429 (895)
.++..++..+.+.|.++.|...+..+.... ...+.....-+..+...|+..+|+..++....
T Consensus 147 ~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 147 ETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344555555555555555555555544321 11233444444555555555555555554444
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.31 E-value=2.2 Score=40.91 Aligned_cols=88 Identities=20% Similarity=0.369 Sum_probs=48.6
Q ss_pred CChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCCHHHHHHHH
Q 002664 276 GKVDMAWKFFHEMKAQGVAPDDVTYTSMIGVLCKSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLF 355 (895)
Q Consensus 276 g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 355 (895)
+.++--...++.|.+.|+.-|..+|+.|++.+-+..- .|. ..+.....-|- .+-+-+++++
T Consensus 86 ~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkf----------------iP~-nvfQ~~F~HYP--~QQ~C~I~vL 146 (406)
T KOG3941|consen 86 THVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKF----------------IPQ-NVFQKVFLHYP--QQQNCAIKVL 146 (406)
T ss_pred chHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccc----------------ccH-HHHHHHHhhCc--hhhhHHHHHH
Confidence 4455555566677777777777777777776533211 111 11111111121 2223456667
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 002664 356 ERLKQKGCIPSVIAYNSLLTCLGKKGR 382 (895)
Q Consensus 356 ~~~~~~~~~~~~~~~~~l~~~~~~~g~ 382 (895)
++|...|+.||..+-..|++++.+.|-
T Consensus 147 eqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 147 EQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHcCCCCchHHHHHHHHHhccccc
Confidence 777777777777777777776666554
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=90.00 E-value=0.8 Score=28.09 Aligned_cols=28 Identities=25% Similarity=0.237 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002664 787 ITYTTMISGLAKAGNITEANGLFERFKE 814 (895)
Q Consensus 787 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 814 (895)
..|..++.++...|++++|++.+++.++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3566677777777777777777777776
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=89.78 E-value=24 Score=35.60 Aligned_cols=130 Identities=13% Similarity=0.194 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHCCCCCCHHhHHHHHHHHHc--cC----CHHHHHHHHHHHHHcCC---CcCHHHHHHHHHHHHccCC--
Q 002664 628 NKAYQLLEEMKTKGHYPTVVTYGSVIDGLAK--ID----RLDEAYMLFEEAKSKGI---ELNTVIYSSLIDGFGKVGR-- 696 (895)
Q Consensus 628 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~--~~----~~~~A~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~-- 696 (895)
++.+.+++.+.+.|+.-+..+|.+....... .. ....|..+|+.|.+... .++-..+..++.. ..++
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 3445566677777776666555443222222 11 24457777777776531 1122233333221 2222
Q ss_pred --HHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcC-C--HHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 002664 697 --IDEAYLIMEELMQKGLTP-NAYTWNCLLDALVKAE-E--ISEAFVCFQSMKDLKCTPNHVTYSIIIN 759 (895)
Q Consensus 697 --~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g-~--~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 759 (895)
.+.+..+|+.+.+.|+.. |..-+.+-+-++.... . ..++.++++.+.+.++++....|..++-
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHH
Confidence 344566666666666665 2222222222222111 1 3466677777777777666666655443
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=89.75 E-value=5.7 Score=35.75 Aligned_cols=73 Identities=27% Similarity=0.314 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 002664 698 DEAYLIMEELMQKGLTPN-AYTWNCLLDALVKAE-----------EISEAFVCFQSMKDLKCTPNHVTYSIIINGLCRVR 765 (895)
Q Consensus 698 ~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g-----------~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 765 (895)
++|+.-|++++. +.|+ ..++..++.+|...+ .+++|.+.|++..+ ..|+...|+.-+...
T Consensus 52 edAisK~eeAL~--I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~---- 123 (186)
T PF06552_consen 52 EDAISKFEEALK--INPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMA---- 123 (186)
T ss_dssp HHHHHHHHHHHH--H-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHH----
T ss_pred HHHHHHHHHHHh--cCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHH----
Confidence 444444555554 3443 345555555554332 13445555555554 336666666555443
Q ss_pred CHhHHHHHHHHHHHC
Q 002664 766 KFNKAFVFWQEMQKQ 780 (895)
Q Consensus 766 ~~~~A~~~~~~~~~~ 780 (895)
.+|-++..++.++
T Consensus 124 --~kap~lh~e~~~~ 136 (186)
T PF06552_consen 124 --AKAPELHMEIHKQ 136 (186)
T ss_dssp --HTHHHHHHHHHHS
T ss_pred --HhhHHHHHHHHHH
Confidence 2455555555544
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.01 E-value=22 Score=34.09 Aligned_cols=190 Identities=9% Similarity=0.029 Sum_probs=119.5
Q ss_pred ccCChHHHHHHHHHHHHCCCCCCH---HhHHHHHHHHHccCCHHHHHHHHHHHHHc-----CCCcCHHHHHHHHHHHHcc
Q 002664 623 KSGKVNKAYQLLEEMKTKGHYPTV---VTYGSVIDGLAKIDRLDEAYMLFEEAKSK-----GIELNTVIYSSLIDGFGKV 694 (895)
Q Consensus 623 ~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~ 694 (895)
+..++++|+.-|++..+....-.. .+...++..+.+.+++++..+.+++++.- .-..+....+++++.-...
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 445789999999998875322222 24456788889999999999999887642 1123445667777666666
Q ss_pred CCHHHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC----CCC-------HHHHHHHH
Q 002664 695 GRIDEAYLIMEELMQK-----GLTPNAYTWNCLLDALVKAEEISEAFVCFQSMKDLKC----TPN-------HVTYSIII 758 (895)
Q Consensus 695 g~~~~A~~~~~~~~~~-----~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~p~-------~~~~~~l~ 758 (895)
.+++--..+|+.-++. +-..-..|-.-|...|...|++.+-..+++++.+..- ..| ...|..-+
T Consensus 119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEI 198 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEI 198 (440)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHh
Confidence 6666666666654431 1001122334577788888888888888888765321 111 14566777
Q ss_pred HHHHhcCCHhHHHHHHHHHHHC-CCCCCHHHHHHHHH----HHHhcCCHHHHHHHHHHH
Q 002664 759 NGLCRVRKFNKAFVFWQEMQKQ-GFKPNTITYTTMIS----GLAKAGNITEANGLFERF 812 (895)
Q Consensus 759 ~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~----~~~~~g~~~~A~~~~~~~ 812 (895)
..|..+++..+-..+|++.+.- ...|.+.+...+-. .+.+.|.+++|..-|=++
T Consensus 199 QmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEA 257 (440)
T KOG1464|consen 199 QMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEA 257 (440)
T ss_pred hhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHH
Confidence 7888888877777888877643 33455544433322 366788888887544443
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=88.91 E-value=1 Score=27.67 Aligned_cols=26 Identities=19% Similarity=0.258 Sum_probs=12.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 002664 719 WNCLLDALVKAEEISEAFVCFQSMKD 744 (895)
Q Consensus 719 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 744 (895)
|..++.+|...|++++|+..|+++++
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 44444444445555555555544444
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=88.86 E-value=8.2 Score=36.36 Aligned_cols=85 Identities=12% Similarity=0.106 Sum_probs=53.6
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCHHH-HHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCH
Q 002664 725 ALVKAEEISEAFVCFQSMKDLKCTPNHVT-YSIIINGLCRVRKFNKAFVFWQEMQKQGFKPNT-ITYTTMISGLAKAGNI 802 (895)
Q Consensus 725 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~ 802 (895)
.|.....+..|+..|.+.+. +.|...+ |..-+.++.+..+++.+..-..+.++ +.|+. .....+..++.....+
T Consensus 19 k~f~~k~y~~ai~~y~raI~--~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~ 94 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAIC--INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGY 94 (284)
T ss_pred cccchhhhchHHHHHHHHHh--cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccc
Confidence 35555667777777777766 4465533 34556666677777777766666665 55554 3455556666666777
Q ss_pred HHHHHHHHHHH
Q 002664 803 TEANGLFERFK 813 (895)
Q Consensus 803 ~~A~~~~~~~~ 813 (895)
++|+..+.++.
T Consensus 95 ~eaI~~Lqra~ 105 (284)
T KOG4642|consen 95 DEAIKVLQRAY 105 (284)
T ss_pred cHHHHHHHHHH
Confidence 77777777763
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=88.32 E-value=31 Score=34.89 Aligned_cols=85 Identities=13% Similarity=0.256 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHHHHHh--c----CChhHHHHHHHHHHhCCC---CCChHhHHHHHHHHHhcCC---
Q 002664 210 LMLNLFHQMQELGYEVSVHLFTTLIRVFAR--E----GRVDDALFLLDEMKNNAF---SVDIVLYNVCIDCFGKVGK--- 277 (895)
Q Consensus 210 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~----g~~~~A~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~--- 277 (895)
....+++.+.+.|+..+..++......... . .....|..+|+.|++..+ .++-.++..++.. ..++
T Consensus 80 ~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~ 157 (297)
T PF13170_consen 80 EVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEE 157 (297)
T ss_pred HHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHH
Confidence 344556666666655554443332222211 1 123455666666665532 2233333333322 2222
Q ss_pred -hhhHHHHHHHHHHCCCCCC
Q 002664 278 -VDMAWKFFHEMKAQGVAPD 296 (895)
Q Consensus 278 -~~~A~~~~~~~~~~g~~p~ 296 (895)
.+.++.+|+.+.+.|+..+
T Consensus 158 l~~~~E~~Y~~L~~~~f~kg 177 (297)
T PF13170_consen 158 LAERMEQCYQKLADAGFKKG 177 (297)
T ss_pred HHHHHHHHHHHHHHhCCCCC
Confidence 2344555555555555433
|
|
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.12 E-value=32 Score=34.91 Aligned_cols=84 Identities=15% Similarity=-0.001 Sum_probs=41.8
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHc----cCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHc----c
Q 002664 588 KAGFAHETDQLFYAMKKQGCVLDTRAYNTVVDGFCK----SGKVNKAYQLLEEMKTKGHYPTVVTYGSVIDGLAK----I 659 (895)
Q Consensus 588 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~ 659 (895)
..+.+..+...+......+ +......+...|.. ..+..+|.+++..+.+.|.. .....+...|.. .
T Consensus 53 ~~~~~~~a~~~~~~a~~~~---~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~~---~a~~~lg~~~~~G~gv~ 126 (292)
T COG0790 53 YPPDYAKALKSYEKAAELG---DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGLA---EALFNLGLMYANGRGVP 126 (292)
T ss_pred ccccHHHHHHHHHHhhhcC---ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcccH---HHHHhHHHHHhcCCCcc
Confidence 3445566666666555532 22333333333332 23456666666666555422 222233333433 3
Q ss_pred CCHHHHHHHHHHHHHcCC
Q 002664 660 DRLDEAYMLFEEAKSKGI 677 (895)
Q Consensus 660 ~~~~~A~~~~~~~~~~~~ 677 (895)
.+..+|..+|.++.+.|.
T Consensus 127 ~d~~~A~~~~~~Aa~~g~ 144 (292)
T COG0790 127 LDLVKALKYYEKAAKLGN 144 (292)
T ss_pred cCHHHHHHHHHHHHHcCC
Confidence 366666666666666653
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=87.92 E-value=6.4 Score=36.30 Aligned_cols=72 Identities=15% Similarity=0.074 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCHhhHHHHHHHHHhcCCHHHH
Q 002664 803 TEANGLFERFKENGGVPDSACYNAMMEGLSNANRAMDAYTLFEETRRK---GFNIHTKTCVILLDALHKAECLEQA 875 (895)
Q Consensus 803 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A 875 (895)
+.|.+.|-.+...+..-++.....|+.-|. ..+.++|+.++-++++. +..+++..+..|+.+|.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 455555555554444334555555544443 34555555555555544 1134455555566666666655555
|
|
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=87.77 E-value=1.2 Score=29.32 Aligned_cols=26 Identities=19% Similarity=0.227 Sum_probs=18.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCC
Q 002664 826 AMMEGLSNANRAMDAYTLFEETRRKG 851 (895)
Q Consensus 826 ~l~~~~~~~g~~~~A~~~~~~~~~~~ 851 (895)
.|+.+|...|+.+.|++++++++..|
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 46777777777777777777777554
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=87.75 E-value=5.3 Score=35.96 Aligned_cols=108 Identities=19% Similarity=0.199 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCC-------HHHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHhcC
Q 002664 697 IDEAYLIMEELMQKGLTPNAYTWNCLLDALVK---AEE-------ISEAFVCFQSMKDLKCTPNH-VTYSIIINGLCRVR 765 (895)
Q Consensus 697 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~-------~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g 765 (895)
++.|.+.++.....+ +.|...++.-+.++.. ... +++|+.-|++.+. +.|+. .++..+..+|...+
T Consensus 7 FE~ark~aea~y~~n-P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~--I~P~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN-PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALK--INPNKHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHHHH
Confidence 456666666644422 2255554444434332 222 3444455555555 34544 56666666665443
Q ss_pred C-----------HhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 002664 766 K-----------FNKAFVFWQEMQKQGFKPNTITYTTMISGLAKAGNITEANGLFERFKEN 815 (895)
Q Consensus 766 ~-----------~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 815 (895)
. +++|.+.|+++.+ ..|+...|+.-+... ++|-++..++.+.
T Consensus 84 ~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~------~kap~lh~e~~~~ 136 (186)
T PF06552_consen 84 FLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMA------AKAPELHMEIHKQ 136 (186)
T ss_dssp HH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHH------HTHHHHHHHHHHS
T ss_pred hhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHH------HhhHHHHHHHHHH
Confidence 2 3444444444444 456666665555433 3455555555544
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=87.35 E-value=1 Score=27.27 Aligned_cols=27 Identities=7% Similarity=0.079 Sum_probs=14.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 002664 824 YNAMMEGLSNANRAMDAYTLFEETRRK 850 (895)
Q Consensus 824 ~~~l~~~~~~~g~~~~A~~~~~~~~~~ 850 (895)
+..++.++.+.|++++|.+.|+++++.
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 334555555555555555555555544
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=87.09 E-value=8.4 Score=33.47 Aligned_cols=93 Identities=14% Similarity=0.062 Sum_probs=59.7
Q ss_pred HhcCCHhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 002664 762 CRVRKFNKAFVFWQEMQKQGFKPNTI-TYTTMISGLAKAGNITEANGLFERFKENGGVPDSACYNAMMEGLSNANRAMDA 840 (895)
Q Consensus 762 ~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 840 (895)
...++.+++..+++.|.- +.|+.. .-..-+..+...|++++|.++++++.+.+.. .+..-..++.++...|+. .=
T Consensus 21 L~~~d~~D~e~lLdALrv--LrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~-~p~~kAL~A~CL~al~Dp-~W 96 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRV--LRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGA-PPYGKALLALCLNAKGDA-EW 96 (153)
T ss_pred HhcCCHHHHHHHHHHHHH--hCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCC-chHHHHHHHHHHHhcCCh-HH
Confidence 457899999999998875 566643 2222344567889999999999999874322 133333344445555654 35
Q ss_pred HHHHHHHHHCCCCCCHhh
Q 002664 841 YTLFEETRRKGFNIHTKT 858 (895)
Q Consensus 841 ~~~~~~~~~~~~~~~~~~ 858 (895)
..+-.++++.+-+++...
T Consensus 97 r~~A~~~le~~~~~~a~~ 114 (153)
T TIGR02561 97 HVHADEVLARDADADAVA 114 (153)
T ss_pred HHHHHHHHHhCCCHhHHH
Confidence 566667777765555543
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=86.75 E-value=5.9 Score=33.54 Aligned_cols=67 Identities=9% Similarity=0.150 Sum_probs=44.8
Q ss_pred CCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 002664 783 KPNTITYTTMISGLAKAG---NITEANGLFERFKENGGVP--DSACYNAMMEGLSNANRAMDAYTLFEETRRK 850 (895)
Q Consensus 783 ~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 850 (895)
.++..+--.+.+++.+.. +..+.+.+++.+.+. -.| +..+...|+-++++.+++++++++++.+++.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~-~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKS-AHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhh-cCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 455666666677766655 445566677777752 233 4556667777788888888888888777765
|
|
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=86.28 E-value=14 Score=35.19 Aligned_cols=48 Identities=17% Similarity=0.114 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHCCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 002664 804 EANGLFERFKENGGVP-----DSACYNAMMEGLSNANRAMDAYTLFEETRRKG 851 (895)
Q Consensus 804 ~A~~~~~~~~~~~~~p-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 851 (895)
.|.+.|++..+....| +......++....+.|+.++|.++|.+++..+
T Consensus 143 ~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 143 KALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 3445555554432222 12344455556666777777777777766653
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=85.84 E-value=1.8 Score=28.07 Aligned_cols=27 Identities=22% Similarity=0.306 Sum_probs=16.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002664 823 CYNAMMEGLSNANRAMDAYTLFEETRR 849 (895)
Q Consensus 823 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 849 (895)
+++.|+..|...|++++|..++++++.
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 455666666666666666666665543
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=85.59 E-value=33 Score=32.45 Aligned_cols=20 Identities=15% Similarity=0.414 Sum_probs=11.8
Q ss_pred HhcCChhHHHHHHHHhhhCC
Q 002664 447 CKAQKLDEAFSIFEGMDHKT 466 (895)
Q Consensus 447 ~~~g~~~~A~~~~~~~~~~~ 466 (895)
...+++.+|+++|+++....
T Consensus 165 a~leqY~~Ai~iyeqva~~s 184 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSS 184 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 34566666666666665543
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=85.37 E-value=52 Score=34.50 Aligned_cols=65 Identities=12% Similarity=0.062 Sum_probs=46.2
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC---ChHhHHHHHHHHHhcCChhhHHHHHHHHHH
Q 002664 226 SVHLFTTLIRVFAREGRVDDALFLLDEMKNNAFSV---DIVLYNVCIDCFGKVGKVDMAWKFFHEMKA 290 (895)
Q Consensus 226 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 290 (895)
...++..++..+.+.|.++.|...+.++...+... .......-+..+...|+..+|...+++...
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44677788888888888888888888877643211 334444556677778888888888877776
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=85.25 E-value=20 Score=38.84 Aligned_cols=154 Identities=11% Similarity=0.114 Sum_probs=104.3
Q ss_pred HHccCCcchHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCChhHH
Q 002664 132 MAVSKNFEPLEEILGEMSLAGIGPTNNTCIELVVSCVKSKMLREAFDIIQTMRKFKFRPAFTAYTTLIGALATVRESNLM 211 (895)
Q Consensus 132 l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 211 (895)
+.-.|+++.|..++..+. ......++.-+.++|..++|+++ .+|..- -.....+.|+++.|
T Consensus 596 ~vmrrd~~~a~~vLp~I~-------k~~rt~va~Fle~~g~~e~AL~~---------s~D~d~---rFelal~lgrl~iA 656 (794)
T KOG0276|consen 596 LVLRRDLEVADGVLPTIP-------KEIRTKVAHFLESQGMKEQALEL---------STDPDQ---RFELALKLGRLDIA 656 (794)
T ss_pred HhhhccccccccccccCc-------hhhhhhHHhHhhhccchHhhhhc---------CCChhh---hhhhhhhcCcHHHH
Confidence 344678887776654332 23445677777788888888765 233221 12223467888888
Q ss_pred HHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHC
Q 002664 212 LNLFHQMQELGYEVSVHLFTTLIRVFAREGRVDDALFLLDEMKNNAFSVDIVLYNVCIDCFGKVGKVDMAWKFFHEMKAQ 291 (895)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 291 (895)
.++..+.. +..-|..|..+....|++..|.++|.+... |..|+-.+...|+-+....+-....+.
T Consensus 657 ~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~ 721 (794)
T KOG0276|consen 657 FDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQ 721 (794)
T ss_pred HHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhh
Confidence 77655432 556799999999999999999999987665 446666777778877777777777776
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHhh
Q 002664 292 GVAPDDVTYTSMIGVLCKSKRLEEAVAMFEQMDR 325 (895)
Q Consensus 292 g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 325 (895)
|. +..++ .+|...|+++++.+++.+-.+
T Consensus 722 g~--~N~AF----~~~~l~g~~~~C~~lLi~t~r 749 (794)
T KOG0276|consen 722 GK--NNLAF----LAYFLSGDYEECLELLISTQR 749 (794)
T ss_pred cc--cchHH----HHHHHcCCHHHHHHHHHhcCc
Confidence 63 23333 357788999999988876543
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.94 E-value=58 Score=34.72 Aligned_cols=99 Identities=10% Similarity=0.121 Sum_probs=69.9
Q ss_pred CCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh--cCCHhHHHHHHHHHHHC-CCCCCHHH
Q 002664 713 TPNAYTW-NCLLDALVKAEEISEAFVCFQSMKDLKCTPNHVTYSIIINGLCR--VRKFNKAFVFWQEMQKQ-GFKPNTIT 788 (895)
Q Consensus 713 ~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~-~~~p~~~~ 788 (895)
.|+..++ +.++..+...|-.++|...+..+.... +|....|..++..-.. .-+...+.++|+.|... | .|+..
T Consensus 456 ~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lp-p~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg--~d~~l 532 (568)
T KOG2396|consen 456 GADSVTLKSKYLDWAYESGGYKKARKVYKSLQELP-PFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG--ADSDL 532 (568)
T ss_pred CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCC-CccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC--CChHH
Confidence 3555544 356777778888899999999888732 5566666666653221 12377788899988876 5 67788
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002664 789 YTTMISGLAKAGNITEANGLFERFKE 814 (895)
Q Consensus 789 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 814 (895)
|...+..-...|..+-+-.++.++.+
T Consensus 533 w~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 533 WMDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred HHHHHHhhccCCCcccccHHHHHHHH
Confidence 88877776688888888888777765
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=84.93 E-value=1.6 Score=26.69 Aligned_cols=26 Identities=27% Similarity=0.300 Sum_probs=11.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002664 789 YTTMISGLAKAGNITEANGLFERFKE 814 (895)
Q Consensus 789 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 814 (895)
|..+...+...|++++|.+.|++.++
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 33444444444444444444444443
|
... |
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.71 E-value=58 Score=34.51 Aligned_cols=43 Identities=23% Similarity=0.341 Sum_probs=30.3
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhH
Q 002664 517 FKHGRKEDGHKIYKEMVQRGCSPDLMLLNTYMDCVFKAGETEK 559 (895)
Q Consensus 517 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 559 (895)
...+.++...+++..+...|.......++.....|++.|....
T Consensus 28 f~~~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~tq~ 70 (696)
T KOG2471|consen 28 FNNSEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCTQH 70 (696)
T ss_pred cCCcchHHHHHHHHHHHhccccccceeeehhhHHHHhcccchh
Confidence 4466788888888888777766666667777777777766544
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=84.62 E-value=60 Score=34.64 Aligned_cols=180 Identities=11% Similarity=0.092 Sum_probs=98.1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHH
Q 002664 226 SVHLFTTLIRVFAREGRVDDALFLLDEMKNNAFSVDIVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGVAPDDVTYTSMIG 305 (895)
Q Consensus 226 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~ 305 (895)
+......++..+....+..-...+..+|+..| .+-..|..++.+|... ..++-..+++++.+..+. |.+.-..|..
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 44445555556655556666666666666553 3444555666666655 445566666666665433 3333344444
Q ss_pred HHHhcCCHhHHHHHHHHHhhCCCCC-----CHHhHHHHHHHHHccCCHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHh
Q 002664 306 VLCKSKRLEEAVAMFEQMDRNREVP-----CAYAYNTMIMGYGSVGKFDEAFSLFERLKQK-GCIPSVIAYNSLLTCLGK 379 (895)
Q Consensus 306 ~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~ 379 (895)
.|- .++.+.+..+|.++...-++. -...|..|... -..+.+....+...+... |...-.+.+..+-.-|..
T Consensus 141 ~yE-kik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 141 KYE-KIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHH-HhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 433 366666766666665432210 11234433321 123455555555555443 222334455555566667
Q ss_pred cCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 002664 380 KGRVTEAMKIFEAMKKDARPNNTTYNVLIDMLC 412 (895)
Q Consensus 380 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 412 (895)
..++++|++++..+.+....|..+...++..+.
T Consensus 218 ~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lR 250 (711)
T COG1747 218 NENWTEAIRILKHILEHDEKDVWARKEIIENLR 250 (711)
T ss_pred ccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHH
Confidence 777777777777777766666666666665544
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=84.37 E-value=5.9 Score=31.23 Aligned_cols=61 Identities=16% Similarity=0.151 Sum_probs=41.3
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHH
Q 002664 347 KFDEAFSLFERLKQKGCIPSVIAYNSLLTCLGKKGRVTEAMKIFEAMKKDARPNNTTYNVL 407 (895)
Q Consensus 347 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 407 (895)
+.-++.+-++.+...+..|++....+-++++.+.+|+..|+++|+.++.....+...|..+
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~ 82 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYI 82 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHH
Confidence 3445666667777777778888888888888888888888888887764433333344443
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=84.03 E-value=53 Score=33.88 Aligned_cols=79 Identities=13% Similarity=0.032 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHH
Q 002664 349 DEAFSLFERLKQKGCIPSVIAYNSLLTCLGKKGRVTEAMKIFEAMKKDARPNNTTYNVLIDMLCK---AGNFEDALKFRD 425 (895)
Q Consensus 349 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~ 425 (895)
+.-+.+++++++.++ .+......++..+.+..+.++..+.++++....|.+...|...+..... .-.++....+|.
T Consensus 48 E~klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~ 126 (321)
T PF08424_consen 48 ERKLSILERALKHNP-DSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYE 126 (321)
T ss_pred HHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 455566666666643 3556666677777777777777777777777777777777776665544 234555555555
Q ss_pred HHH
Q 002664 426 AMK 428 (895)
Q Consensus 426 ~~~ 428 (895)
+.+
T Consensus 127 ~~l 129 (321)
T PF08424_consen 127 KCL 129 (321)
T ss_pred HHH
Confidence 443
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=83.80 E-value=10 Score=34.96 Aligned_cols=74 Identities=8% Similarity=-0.005 Sum_probs=51.8
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 002664 768 NKAFVFWQEMQKQGFKPNTITYTTMISGLAKAGNITEANGLFERFKEN---GGVPDSACYNAMMEGLSNANRAMDAYT 842 (895)
Q Consensus 768 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~A~~ 842 (895)
++|...|-.+...+.--++.....|+. |...-+.++|..++.++++. +-.+|+..+..|+..+.+.|+++.|.-
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAt-yY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AYi 199 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALAT-YYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAYI 199 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHH-HHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhhh
Confidence 677777777776655545555544444 44466788888888888764 224578888888888888888888764
|
|
| >COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=83.79 E-value=22 Score=34.44 Aligned_cols=57 Identities=11% Similarity=0.021 Sum_probs=38.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHH-------HHHHHHHHHhcCCHhHHHHHHHHH
Q 002664 721 CLLDALVKAEEISEAFVCFQSMKDLKCTPNHVT-------YSIIINGLCRVRKFNKAFVFWQEM 777 (895)
Q Consensus 721 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-------~~~l~~~~~~~g~~~~A~~~~~~~ 777 (895)
-+++-..+.+++++|+..+.+++..|...+..+ ...+...|...|++..--+.....
T Consensus 8 e~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~s 71 (421)
T COG5159 8 ELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSS 71 (421)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhh
Confidence 355566778888999999998888877666533 334556677777766655554433
|
|
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=83.32 E-value=28 Score=29.74 Aligned_cols=70 Identities=13% Similarity=0.175 Sum_probs=45.4
Q ss_pred CCCHHHHHHHHHHHHhcCC---HhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 002664 748 TPNHVTYSIIINGLCRVRK---FNKAFVFWQEMQKQGFKPN--TITYTTMISGLAKAGNITEANGLFERFKENGGVPD 820 (895)
Q Consensus 748 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 820 (895)
.+...+-..+.+++.+..+ ..+.+.+++...+. -.|+ ......|.-++.+.|++++++++.+.+++ ..||
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~-~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~--~e~~ 103 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKS-AHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE--TEPN 103 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhh-cCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh--hCCC
Confidence 4566666677777777654 45566777777752 2232 23334455567888888888888888887 5554
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=82.83 E-value=91 Score=35.34 Aligned_cols=76 Identities=18% Similarity=0.209 Sum_probs=39.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 002664 374 LTCLGKKGRVTEAMKIFEAMKKDARP--NNTTYNVLIDMLCKAGNFEDALKFRDAMKEAGLFPNVMTVNIMVDRLCKAQK 451 (895)
Q Consensus 374 ~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 451 (895)
+..+.+.+.+++|++.-+......+. -.......+..+...|++++|-...-.|... +...|...+..+...++
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~~~ 438 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAELDQ 438 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccccc
Confidence 34455666666666665544433222 2334555566666666666666666665542 34444444444444444
Q ss_pred hh
Q 002664 452 LD 453 (895)
Q Consensus 452 ~~ 453 (895)
..
T Consensus 439 l~ 440 (846)
T KOG2066|consen 439 LT 440 (846)
T ss_pred cc
Confidence 33
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=82.59 E-value=1e+02 Score=35.68 Aligned_cols=225 Identities=12% Similarity=0.052 Sum_probs=107.4
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCH-------HhHHHHHH-HHHccCChHHHHHHHHHHHHC----CCCCCHHhHHHHHH
Q 002664 587 VKAGFAHETDQLFYAMKKQGCVLDT-------RAYNTVVD-GFCKSGKVNKAYQLLEEMKTK----GHYPTVVTYGSVID 654 (895)
Q Consensus 587 ~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~----~~~p~~~~~~~l~~ 654 (895)
....++.+|..+..++...-..|+. ..++.+-. .....|++++|.++.+..... -..+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 3455666666666655443111111 12222211 233467788888877776654 11233445555666
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCcCHHHHH---HH--HHHHHccCC--HHHHHHHHHHHHHC--CCCC----CHHHHHH
Q 002664 655 GLAKIDRLDEAYMLFEEAKSKGIELNTVIYS---SL--IDGFGKVGR--IDEAYLIMEELMQK--GLTP----NAYTWNC 721 (895)
Q Consensus 655 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~---~l--~~~~~~~g~--~~~A~~~~~~~~~~--~~~p----~~~~~~~ 721 (895)
+..-.|++++|..+.++..+..-..+...+. .+ ...+..+|. +.+....+...... ...| -..+...
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 6777788888888777766542222333222 22 223455562 22333333333221 1111 1223333
Q ss_pred HHHHHHh-cCCHHHHHHHHHHHHhcCCCCCH--HHHHHHHHHHHhcCCHhHHHHHHHHHHHCCC----CCCHHHHHHHHH
Q 002664 722 LLDALVK-AEEISEAFVCFQSMKDLKCTPNH--VTYSIIINGLCRVRKFNKAFVFWQEMQKQGF----KPNTITYTTMIS 794 (895)
Q Consensus 722 l~~~~~~-~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~p~~~~~~~l~~ 794 (895)
+..++.+ .+...+|..-++--......|-. ..+..|+.+....|++++|...+.++..... .++..+-...+.
T Consensus 586 ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~ 665 (894)
T COG2909 586 LLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVK 665 (894)
T ss_pred HHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhh
Confidence 4444443 11222222222222221211211 1223677778888888888888887765422 222223333333
Q ss_pred H--HHhcCCHHHHHHHHHH
Q 002664 795 G--LAKAGNITEANGLFER 811 (895)
Q Consensus 795 ~--~~~~g~~~~A~~~~~~ 811 (895)
. -...|+.++|.....+
T Consensus 666 ~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 666 LILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHhcccCCHHHHHHHHHh
Confidence 3 3456788877776655
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=82.50 E-value=3.4 Score=25.22 Aligned_cols=28 Identities=14% Similarity=0.141 Sum_probs=18.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 002664 823 CYNAMMEGLSNANRAMDAYTLFEETRRK 850 (895)
Q Consensus 823 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 850 (895)
+|..++..|...|++++|...|++.++.
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4556666666667777777666666553
|
... |
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=82.36 E-value=98 Score=35.37 Aligned_cols=29 Identities=14% Similarity=0.159 Sum_probs=15.2
Q ss_pred hhHHHHHHHHhh---cCCHHHHHHHHHHHHhC
Q 002664 472 VTFCSLIDGLGK---NGRVDDAYKFYEKMLDT 500 (895)
Q Consensus 472 ~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~ 500 (895)
.-+..++..|.+ ..+..+|.++|--+...
T Consensus 325 ln~arLI~~Y~~~F~~td~~~Al~Y~~li~~~ 356 (613)
T PF04097_consen 325 LNFARLIGQYTRSFEITDPREALQYLYLICLF 356 (613)
T ss_dssp --HHHHHHHHHHTTTTT-HHHHHHHHHGGGGS
T ss_pred cCHHHHHHHHHHHHhccCHHHHHHHHHHHHHc
Confidence 345556666654 34666777666655443
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=82.11 E-value=2 Score=24.52 Aligned_cols=17 Identities=18% Similarity=0.159 Sum_probs=6.9
Q ss_pred HHHHHHhcCCHHHHHHH
Q 002664 827 MMEGLSNANRAMDAYTL 843 (895)
Q Consensus 827 l~~~~~~~g~~~~A~~~ 843 (895)
++.++...|++++|..+
T Consensus 7 la~~~~~~G~~~eA~~~ 23 (26)
T PF07721_consen 7 LARALLAQGDPDEAERL 23 (26)
T ss_pred HHHHHHHcCCHHHHHHH
Confidence 33344444444444333
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=81.95 E-value=1.9 Score=26.10 Aligned_cols=13 Identities=15% Similarity=0.685 Sum_probs=4.8
Q ss_pred cCCHHHHHHHHHH
Q 002664 414 AGNFEDALKFRDA 426 (895)
Q Consensus 414 ~g~~~~A~~~~~~ 426 (895)
.|++++|.+.|++
T Consensus 13 ~g~~~~A~~~~~~ 25 (33)
T PF13174_consen 13 LGDYDEAIEYFQR 25 (33)
T ss_dssp HCHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHH
Confidence 3333333333333
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=81.76 E-value=3.7 Score=26.49 Aligned_cols=28 Identities=21% Similarity=0.234 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002664 787 ITYTTMISGLAKAGNITEANGLFERFKE 814 (895)
Q Consensus 787 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 814 (895)
.+++.|...|...|++++|..+++++++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4677888888888888888888888765
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=81.76 E-value=35 Score=29.83 Aligned_cols=52 Identities=12% Similarity=0.116 Sum_probs=33.1
Q ss_pred hcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 002664 379 KKGRVTEAMKIFEAMKKDARPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEA 430 (895)
Q Consensus 379 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 430 (895)
..++.+++..++..+.-..|.....-..-+..+...|+|.+|.++|+++.+.
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 3566666666666665555555555555556666667777777777776654
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=81.69 E-value=1e+02 Score=35.03 Aligned_cols=102 Identities=14% Similarity=0.102 Sum_probs=58.6
Q ss_pred HHHHHhcCChhhHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHcc
Q 002664 269 IDCFGKVGKVDMAWKFFHEMKAQGVAP---DDVTYTSMIGVLCKSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSV 345 (895)
Q Consensus 269 ~~~~~~~g~~~~A~~~~~~~~~~g~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 345 (895)
++.+.+.+.+++|+...+..... .| -.......|..+...|++++|-...-.|... +...|...+..+...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccc
Confidence 44556777788888776654432 33 2335667777788888888888887777763 455555555555555
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 002664 346 GKFDEAFSLFERLKQKGCIPSVIAYNSLLTCLGK 379 (895)
Q Consensus 346 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 379 (895)
++......+ +.......+...|..++..+..
T Consensus 437 ~~l~~Ia~~---lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 437 DQLTDIAPY---LPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred cccchhhcc---CCCCCcccCchHHHHHHHHHHH
Confidence 544332221 1111111345566666655554
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=81.38 E-value=8 Score=30.92 Aligned_cols=59 Identities=15% Similarity=0.202 Sum_probs=35.9
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 002664 350 EAFSLFERLKQKGCIPSVIAYNSLLTCLGKKGRVTEAMKIFEAMKKDARPNNTTYNVLI 408 (895)
Q Consensus 350 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 408 (895)
+..+-++.+...+..|++.+....++++.+.+++..|+++|+.++....+....|..++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~l 86 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYIL 86 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHH
Confidence 55566666666777777777777888888888888888888777654333333444443
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=81.18 E-value=41 Score=33.35 Aligned_cols=98 Identities=17% Similarity=0.223 Sum_probs=49.3
Q ss_pred CHHhHHHHHHHHHccCCHHHHHHHHHHHHHcC---CCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 002664 645 TVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKG---IELNTVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNAYTWNC 721 (895)
Q Consensus 645 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 721 (895)
+..+...++..-....+++.+..++-+..... ..++... ...++.+. .-++++++.++..=++.|+-||..+++.
T Consensus 63 s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf~~c~ 140 (418)
T KOG4570|consen 63 SSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQFTFCL 140 (418)
T ss_pred ceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH-HHHHHHHH-ccChHHHHHHHhCcchhccccchhhHHH
Confidence 34444444544444556666666655554320 0111111 11222222 2345566666665566666666666666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh
Q 002664 722 LLDALVKAEEISEAFVCFQSMKD 744 (895)
Q Consensus 722 l~~~~~~~g~~~~A~~~~~~~~~ 744 (895)
|++.+.+.+++.+|..+...|..
T Consensus 141 l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 141 LMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred HHHHHHhcccHHHHHHHHHHHHH
Confidence 66666666666666665555544
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=80.73 E-value=1.9e+02 Score=37.72 Aligned_cols=152 Identities=16% Similarity=0.105 Sum_probs=99.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCC--CCChHhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 002664 232 TLIRVFAREGRVDDALFLLDEMKNNAF--SVDIVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGVAPDDVTYTSMIGVLCK 309 (895)
Q Consensus 232 ~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~ 309 (895)
.++.+-.+++.+..|...++.-..... ......|-.+...|...+++|....+...-.. .|+ .+ .-|-....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~~s--l~-~qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA---DPS--LY-QQILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---Ccc--HH-HHHHHHHh
Confidence 456677789999999999988311100 12233455556689999999988888764222 222 22 34445678
Q ss_pred cCCHhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHH-HHHHHhcCCHHHHHH
Q 002664 310 SKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLFERLKQKGCIPSVIAYNSL-LTCLGKKGRVTEAMK 388 (895)
Q Consensus 310 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~A~~ 388 (895)
.|++..|...|+++.+.++. ...+++.++..-...|.++...-..+-....- .+....++++ ..+-.+.++++....
T Consensus 1462 ~g~~~da~~Cye~~~q~~p~-~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~ 1539 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKDPD-KEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLES 1539 (2382)
T ss_pred hccHHHHHHHHHHhhcCCCc-cccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhh
Confidence 99999999999999988764 57788888877778888888877666555432 2233333333 233356677766665
Q ss_pred HHH
Q 002664 389 IFE 391 (895)
Q Consensus 389 ~~~ 391 (895)
...
T Consensus 1540 ~l~ 1542 (2382)
T KOG0890|consen 1540 YLS 1542 (2382)
T ss_pred hhh
Confidence 544
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=80.21 E-value=45 Score=30.10 Aligned_cols=101 Identities=18% Similarity=0.214 Sum_probs=53.1
Q ss_pred HHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHCC
Q 002664 213 NLFHQMQELGYEVSVHLFTTLIRVFAREGRVDDALFLLDEMKNNAFSVDIVLYNVCIDCFGKVGKVDMAWKFFHEMKAQG 292 (895)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 292 (895)
++.+.+.+.+.+++...+..++..+.+.|++....+++. .++-+|....-..+ +...+.+..+.++--+|..+
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq----~~Vi~DSk~lA~~L--Ls~~~~~~~~~Ql~lDMLkR- 87 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQ----YHVIPDSKPLACQL--LSLGNQYPPAYQLGLDMLKR- 87 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHh----hcccCCcHHHHHHH--HHhHccChHHHHHHHHHHHH-
Confidence 445555566666777777777777777776555444433 33333333222111 11223334455554455443
Q ss_pred CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 002664 293 VAPDDVTYTSMIGVLCKSKRLEEAVAMFEQM 323 (895)
Q Consensus 293 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 323 (895)
=...+..++..+...|++-+|+++.+..
T Consensus 88 ---L~~~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 88 ---LGTAYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred ---hhhhHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 1113445666677777777777777664
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=80.16 E-value=12 Score=36.87 Aligned_cols=34 Identities=18% Similarity=0.132 Sum_probs=19.0
Q ss_pred cCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 002664 151 AGIGPTNNTCIELVVSCVKSKMLREAFDIIQTMR 184 (895)
Q Consensus 151 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 184 (895)
.|.+.+..+...++..-......+++..++-+++
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlR 91 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLR 91 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHh
Confidence 4555555555555555555555666665555554
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=80.02 E-value=1.2e+02 Score=34.76 Aligned_cols=45 Identities=11% Similarity=0.198 Sum_probs=24.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc
Q 002664 404 YNVLIDMLCKAGNFEDALKFRDAMKEAGLFPNVMTVNIMVDRLCKA 449 (895)
Q Consensus 404 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 449 (895)
.-.+|-.+.++|++++|.++..+.... .......+...+..+...
T Consensus 114 ~Wa~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 114 IWALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASS 158 (613)
T ss_dssp HHHHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTT
T ss_pred cHHHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhC
Confidence 345566667777777777777444332 223334455555555543
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 93.7 bits (231), Expect = 1e-19
Identities = 32/286 (11%), Positives = 78/286 (27%), Gaps = 5/286 (1%)
Query: 174 REAFDIIQTMRKFKFRPAFTAYTTLIGALATVRESNLMLNLFHQMQELGYEVSVHLFTTL 233
+ A + R+ P L+ ++ Q +
Sbjct: 74 QMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAF 133
Query: 234 IRVFAREGRVDDALFLLDEMKNNA---FSVDIVLYNVCIDCFGKVGKVDMAWKFFHEMKA 290
+ ++ A LL + + +YN + + + G +K
Sbjct: 134 FKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKD 193
Query: 291 QGVAPDDVTYTSMIGVLCKSKRLEEAVA-MFEQMDRNREVPCAYAYNTMIMGYGSVGKFD 349
G+ PD ++Y + + + + + + EQM + A ++
Sbjct: 194 AGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLK 253
Query: 350 EAFSLFERLKQKGCIPSVIAYNSLLTCLGKKGRVTEAMKIFEAMKKDARPNNTTYNVLID 409
+ +P + + LL + K K+ +K ++ +
Sbjct: 254 AVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEKQLHMELA 313
Query: 410 MLCKAGNFEDALKFRDAMKEAGLFPNVMTVNIMVDRLCKAQKLDEA 455
+ E +K A + + LC+A + +
Sbjct: 314 SRVCVVSVEKPTLPSKEVKHARKTLKTL-RDQWEKALCRALRETKN 358
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 88.0 bits (216), Expect = 7e-18
Identities = 23/202 (11%), Positives = 67/202 (33%), Gaps = 5/202 (2%)
Query: 274 KVGKVDMAWKFFHEMKAQGVAPDDVTYTSMIGVLCKSKRLEEAVAM---FEQMDRNREVP 330
+D+ + ++ + + +L A + + R++
Sbjct: 104 GKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLL 163
Query: 331 CAYAYNTMIMGYGSVGKFDEAFSLFERLKQKGCIPSVIAYNSLLTCLGKKGRVTEAMKIF 390
YN +++G+ G F E + +K G P +++Y + L C+G++ + ++
Sbjct: 164 TLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERC 223
Query: 391 --EAMKKDARPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEAGLFPNVMTVNIMVDRLCK 448
+ ++ + VL+ +A + K + P + + ++ +
Sbjct: 224 LEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYA 283
Query: 449 AQKLDEAFSIFEGMDHKTCTPD 470
+ + C +
Sbjct: 284 KDGRVSYPKLHLPLKTLQCLFE 305
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 81.8 bits (200), Expect = 7e-16
Identities = 27/228 (11%), Positives = 67/228 (29%), Gaps = 33/228 (14%)
Query: 504 PNAILYTSLIRNFFKHGRKEDGHKIYKEMVQRGCSPDLMLLNTYMDCVFKAGETEKGRAL 563
P L++ + + Q S L + C +
Sbjct: 90 PWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPL---- 145
Query: 564 FEEIKAQGFVPDVQSYSILIHGLVKAGFAHETDQLFYAMKKQGCVLDTRAYNTVVDGFCK 623
AH + + +++ +L YN V+ G+ +
Sbjct: 146 ----------------------------AHHLLVVHHGQRQKRKLLTLDMYNAVMLGWAR 177
Query: 624 SGKVNKAYQLLEEMKTKGHYPTVVTYGSVIDGLAKIDRLDEAY-MLFEEAKSKGIELNTV 682
G + +L +K G P +++Y + + + + D+ E+ +G++L +
Sbjct: 178 QGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQAL 237
Query: 683 IYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNAYTWNCLLDALVKAE 730
+ L+ + + + + P + LL + +
Sbjct: 238 FTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKD 285
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 80.6 bits (197), Expect = 1e-15
Identities = 19/175 (10%), Positives = 55/175 (31%), Gaps = 4/175 (2%)
Query: 623 KSGKVNKAYQLLEEMKTKGHYPTVVTYGSVIDGLAKIDRLDEAYML---FEEAKSKGIEL 679
++ + + D+L A+ L + K L
Sbjct: 104 GKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLL 163
Query: 680 NTVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNAYTWNCLLDALVKAEEISEAFV-C 738
+Y++++ G+ + G E ++ + GLTP+ ++ L + + ++ + C
Sbjct: 164 TLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERC 223
Query: 739 FQSMKDLKCTPNHVTYSIIINGLCRVRKFNKAFVFWQEMQKQGFKPNTITYTTMI 793
+ M + +++++ R P + + ++
Sbjct: 224 LEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLL 278
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 79.1 bits (193), Expect = 4e-15
Identities = 19/211 (9%), Positives = 54/211 (25%), Gaps = 4/211 (1%)
Query: 668 LFEEAKSKGIELNTVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNAYTWNCLLDALV 727
L + + + L+ +D + Q L+ +
Sbjct: 79 LEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCL 138
Query: 728 KAEEISEA---FVCFQSMKDLKCTPNHVTYSIIINGLCRVRKFNKAFVFWQEMQKQGFKP 784
+++ A V + + Y+ ++ G R F + ++ G P
Sbjct: 139 LTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTP 198
Query: 785 NTITYTTMISGLAKAGNITEA-NGLFERFKENGGVPDSACYNAMMEGLSNANRAMDAYTL 843
+ ++Y + + + E+ + G + ++ A + +
Sbjct: 199 DLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKV 258
Query: 844 FEETRRKGFNIHTKTCVILLDALHKAECLEQ 874
LL ++ +
Sbjct: 259 KPTFSLPPQLPPPVNTSKLLRDVYAKDGRVS 289
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 73.7 bits (179), Expect = 2e-13
Identities = 32/284 (11%), Positives = 80/284 (28%), Gaps = 7/284 (2%)
Query: 453 DEAFSIFEGMDHKTCTPDAVTFCSLIDGLGKNGRVDDAYKFYEKMLDTDQIPNAILYTSL 512
A + + +P L+ +D + +
Sbjct: 74 QMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAF 133
Query: 513 IRNFFKHGRKEDGHKI---YKEMVQRGCSPDLMLLNTYMDCVFKAGETEKGRALFEEIKA 569
+ + H + + Q+ L + N M + G ++ + +K
Sbjct: 134 FKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKD 193
Query: 570 QGFVPDVQSYSILIHGLVKAGFAHET-DQLFYAMKKQGCVLDTRAYNTVVDGFCKSGKVN 628
G PD+ SY+ + + + T ++ M ++G L ++ ++ +
Sbjct: 194 AGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLK 253
Query: 629 KAYQLLEEMKTKGHYPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNTVIYSSLI 688
+++ P V ++ + D L K+ ++ L
Sbjct: 254 AVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEKQLHMEL- 312
Query: 689 DGFGKVGRIDEAYLIMEELMQKGLTPNA--YTWNCLLDALVKAE 730
V +++ L +E+ T W L ++
Sbjct: 313 ASRVCVVSVEKPTLPSKEVKHARKTLKTLRDQWEKALCRALRET 356
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 72.9 bits (177), Expect = 3e-13
Identities = 22/206 (10%), Positives = 54/206 (26%), Gaps = 4/206 (1%)
Query: 376 CLGKKGRVTEAMKIFEAMKKDARPNNTTYNVLIDMLCKAGNFEDA---LKFRDAMKEAGL 432
GK E + + A L ++
Sbjct: 102 APGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRK 161
Query: 433 FPNVMTVNIMVDRLCKAQKLDEAFSIFEGMDHKTCTPDAVTFCSLIDGLGKNGRVDDAYK 492
+ N ++ + E + + TPD +++ + + +G+ + +
Sbjct: 162 LLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIE 221
Query: 493 FY-EKMLDTDQIPNAILYTSLIRNFFKHGRKEDGHKIYKEMVQRGCSPDLMLLNTYMDCV 551
E+M A+ L+ + + HK+ P + + + V
Sbjct: 222 RCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDV 281
Query: 552 FKAGETEKGRALFEEIKAQGFVPDVQ 577
+ L +K + + Q
Sbjct: 282 YAKDGRVSYPKLHLPLKTLQCLFEKQ 307
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 69.1 bits (167), Expect = 5e-12
Identities = 22/239 (9%), Positives = 67/239 (28%), Gaps = 5/239 (2%)
Query: 97 RRLKDVNLAINYFRWVERKTDQAHSLEAYNSLLMVMAVSKNFEPLEEILGEMSLAGIGPT 156
RL +A + + E LL + + + G+ S A +
Sbjct: 68 PRLLSKQMAGCLEDCTRQAPESP-WEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQ 126
Query: 157 NNTCIELVVSCVKSKMLREAFDIIQTMRKFKFR---PAFTAYTTLIGALATVRESNLMLN 213
+ C+ + L A ++ + + Y ++ A ++
Sbjct: 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVY 186
Query: 214 LFHQMQELGYEVSVHLFTTLIRVFAREGRVDDAL-FLLDEMKNNAFSVDIVLYNVCIDCF 272
+ +++ G + + ++ R+ + + L++M + + V +
Sbjct: 187 VLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEE 246
Query: 273 GKVGKVDMAWKFFHEMKAQGVAPDDVTYTSMIGVLCKSKRLEEAVAMFEQMDRNREVPC 331
+ + K P V + ++ + + + + +
Sbjct: 247 DRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFE 305
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 56.7 bits (135), Expect = 3e-08
Identities = 10/140 (7%), Positives = 30/140 (21%), Gaps = 3/140 (2%)
Query: 740 QSMKDLKCTPNHVTYSIIINGLCRVRKFNKAFVFWQEMQKQGFKPNTITYTTMISGLAKA 799
+ +P + ++ + + +
Sbjct: 81 DCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLT 140
Query: 800 GNITEANGLFERFKE---NGGVPDSACYNAMMEGLSNANRAMDAYTLFEETRRKGFNIHT 856
+ A+ L + YNA+M G + + + + G
Sbjct: 141 DQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDL 200
Query: 857 KTCVILLDALHKAECLEQAA 876
+ L + + +
Sbjct: 201 LSYAAALQCMGRQDQDAGTI 220
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 72.6 bits (177), Expect = 4e-13
Identities = 89/630 (14%), Positives = 181/630 (28%), Gaps = 194/630 (30%)
Query: 76 VENALSSLDGMPQPGLVIGVLRR---------LKDVNLAINY-F---RWVERKTDQAHSL 122
+++ + S D + + L +++V L INY F + +
Sbjct: 51 IDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEV-LRINYKFLMSPIKTEQRQPSMMT 109
Query: 123 EAY----------NSLLMVMAVS--KNFEPLEEILGEMS---------LAGIGPTNNTCI 161
Y N + VS + + L + L E+ + G G T
Sbjct: 110 RMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSG---KTW- 165
Query: 162 ELVVSCVKSKMLREAFDIIQTMRKFKFRPAFTAYTTLIGALATVRESNLML-NLFHQM-- 218
+ + S ++ D F + + + ML L +Q+
Sbjct: 166 -VALDVCLSYKVQCKMD-------------FKIFWLNLKNCNSPETVLEMLQKLLYQIDP 211
Query: 219 -------QELGYEVSVHLFTTLIRVFAREGRVDDALFLLDEMKN----NAFSV------- 260
++ +H +R + ++ L +L ++N NAF++
Sbjct: 212 NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLT 271
Query: 261 --DIVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGVAPDDVTYTSMIGVLCKSKRL-EEA- 316
+ + +D + + + + C+ + L E
Sbjct: 272 TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL------LLKYLD--CRPQDLPREVL 323
Query: 317 ------VAMFEQMDRN--------REVPCAYAYNTMIMGYGSVGKFD--------EAFSL 354
+++ + R+ + V C T+I S+ + + S+
Sbjct: 324 TTNPRRLSIIAESIRDGLATWDNWKHVNC-DKLTTIIES--SLNVLEPAEYRKMFDRLSV 380
Query: 355 F-ERLKQKGCIPSVIAYNSLLTCLGKKGRVTEAMKIFEAMKK----DARPNNTTY---NV 406
F IP+ LL+ + ++ M + + K + +P +T ++
Sbjct: 381 FPPSAH----IPT-----ILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSI 431
Query: 407 LIDMLCKAGNFEDALKFRDAMKEAGLFPNVMTVNIMVDRLCKAQKLDEAFSIFEGMDHKT 466
+++ K N E AL + + + ++I + D
Sbjct: 432 YLELKVKLEN-EYALH---------------------------RSIVDHYNIPKTFDSDD 463
Query: 467 CTPDAVT--FCSLIDG--LGKNGRVDDAYKFYEKMLDTDQIPNAILYTSLIRNFFKHGRK 522
P + F S I G L + F LD + I + S N G
Sbjct: 464 LIPPYLDQYFYSHI-GHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWN--ASGSI 520
Query: 523 ED---GHKIYKEMVQRGCSPDLMLLNTYMDCVFKAGETEKGRALFEEIKAQGFVPDVQSY 579
+ K YK + L+N +D + K E
Sbjct: 521 LNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEE----------------------- 557
Query: 580 SILIHG----LVKAGFAHETDQLFYAMKKQ 605
LI L++ E + +F KQ
Sbjct: 558 -NLICSKYTDLLRIALMAEDEAIFEEAHKQ 586
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 55.2 bits (132), Expect = 9e-08
Identities = 108/742 (14%), Positives = 203/742 (27%), Gaps = 264/742 (35%)
Query: 216 HQMQELGYEVSV--HLFTTLIRVFAREGRVD-DALFLLDEMKNNAFS---VDIVLYNVCI 269
H + +E + + ++ VF + D + D K+ S +D ++
Sbjct: 2 HHHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKS-ILSKEEIDHII----- 55
Query: 270 DCFGKVGKVDMAWKFFHEMKAQGVAPDDVTYTS-MIGVLCKSKRLEEAVAMF--EQMDRN 326
++ D V+ T + L + EE V F E + N
Sbjct: 56 -----------------------MSKDAVSGTLRLFWTLLSKQ--EEMVQKFVEEVLRIN 90
Query: 327 REVPCAYAYNTMIMGYGSVGKFDEAFSLFERLKQKGCIPSVI--AYNSLLTCLGKKG--- 381
Y + L +K + PS++ Y L
Sbjct: 91 ------YKF------------------LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF 126
Query: 382 ------RVTEAMKIFEAMKKDARPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEAGLFPN 435
R+ +K+ +A+ + RP NVLID G + +G
Sbjct: 127 AKYNVSRLQPYLKLRQALLEL-RPAK---NVLID-----G-----------VLGSG---- 162
Query: 436 VMTVNIMVDRLCKAQKLDEAFS--IFEGMDHKTC-TPDAV-----TFCSLIDGLGKNG-- 485
T + +C + K+ IF ++ K C +P+ V ID +
Sbjct: 163 -KTW--VALDVCLSYKVQCKMDFKIF-WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSD 218
Query: 486 -------RVDDAYKFYEKMLDTDQIPNAIL------YTSLIRNFFKHGRKEDGHKIYKEM 532
R+ ++L + N +L F +
Sbjct: 219 HSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF-------NL------- 264
Query: 533 VQRGCSPDLMLLNTYMDCVFKAGETEKGRALFEEIKAQGFVPDVQSYSILIHGLVKAGFA 592
C +LL T V + + + PD
Sbjct: 265 ---SCK---ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD----------------- 301
Query: 593 HETDQLFYAMKKQGCVLDTRAYNTVVDGFCKSGKVNKAYQLLEEMKTKGHYPTVVTYGSV 652
E L +K C + L E+ + P + S+
Sbjct: 302 -EVKSLL--LKYLDC---------------------RPQDLPREVL-TTN-PRRL---SI 332
Query: 653 I-----DGLAKIDRLDEAYMLFEEAKSKGIE-----LNTVIYSSLIDGFG---------- 692
I DGLA D + + + IE L Y + D
Sbjct: 333 IAESIRDGLATWDNWK---HVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPT 389
Query: 693 KVGRI-------DEAYLIMEELMQKGLT---PNAYTW---NCLLDALVKAEE-------I 732
+ + + +++ +L + L P T + L+ VK E I
Sbjct: 390 ILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSI 449
Query: 733 SEAFVCFQSMKDLKCTP--------NHVTYSIIINGLC-RVRKFNKAFV-F-W--QEMQK 779
+ + ++ P +H+ + + R+ F F+ F + Q+++
Sbjct: 450 VDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRH 509
Query: 780 QGFKPNTITYTT-MISGLAKAGN-ITEANGLFER-------FKENGG--VPDSACYNAMM 828
N + L I + + +ER F + S + +
Sbjct: 510 DSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLR 569
Query: 829 EGLSNANRAMDAYTLFEETRRK 850
L + A +FEE ++
Sbjct: 570 IALMAEDEA-----IFEEAHKQ 586
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 47.2 bits (111), Expect = 3e-05
Identities = 72/467 (15%), Positives = 152/467 (32%), Gaps = 121/467 (25%)
Query: 1 MKMLLRNPGRRLRYQIFDISKRLSSWSDGSS-------FGSDGKVVLFGDGSYQGNSRMN 53
++ML + L YQI +S SD SS L Y+ N +
Sbjct: 199 LEMLQK-----LLYQI---DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE-NCLL- 248
Query: 54 DWARTVVDDVYNILHAGPWGPAVENALSSLDGMPQPGLVIGVLRRLKDVNLAINYFRWVE 113
V+ +V N A ++ + + I + R K V ++
Sbjct: 249 -----VLLNVQN-----------AKAWNAFNLSCK----ILLTTRFKQVTDFLSAATTTH 288
Query: 114 RKTDQ-AHSLEAYNSL-LMVMAVSKNFEPL-EEILGEMSLAGIGPTNNTCIELVVSCVKS 170
D + +L L++ + + L E+L P +S + +
Sbjct: 289 ISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVL------TTNP-------RRLSII-A 334
Query: 171 KMLREAFDIIQTMRKFKFRPAFTAYTTLIGALATVRESNLMLNLFHQMQELG-YEVSVHL 229
+ +R+ + TT+I + V E +F L + S H+
Sbjct: 335 ESIRDGLATWDNWKHVNCD----KLTTIIESSLNVLEPAEYRKMF---DRLSVFPPSAHI 387
Query: 230 FTTLIRVFAREGRVDDALFLLDEMKNNAFSVDIVLYNVCIDCFGKVGKVDMAWKFFH--- 286
T L+ + + D + +++++ + ++ K +
Sbjct: 388 PTILLSLIWFDVIKSDVMVVVNKLHKYS----------LVEKQPKESTI-----SIPSIY 432
Query: 287 -EMKAQGVAPDDVTYTSMIGVLCKSKRLEEAVAMFEQMDRNREVPCA---YAYNTMIMGY 342
E+K + ++ + + + + + D + +P Y Y+ +G+
Sbjct: 433 LELKVK---LENEYA--------LHRSIVDHYNIPKTFDSDDLIPPYLDQYFYS--HIGH 479
Query: 343 -GSVGKFDEAFSLFER-------LKQKGCIPSVIAYNSLLTCLGKKGRVTEAMKIFEAMK 394
+ E +LF L+QK I ++S T G + ++ + K
Sbjct: 480 HLKNIEHPERMTLFRMVFLDFRFLEQK------IRHDS--TAWNASGSILNTLQQLKFYK 531
Query: 395 KDARPNNTTY----NVLIDMLCKAGNFEDAL--KFRDAMKEAGLFPN 435
N+ Y N ++D L K E+ + K+ D ++ A + +
Sbjct: 532 PYICDNDPKYERLVNAILDFLPKIE--ENLICSKYTDLLRIALMAED 576
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 64.4 bits (157), Expect = 8e-11
Identities = 53/479 (11%), Positives = 106/479 (22%), Gaps = 78/479 (16%)
Query: 289 KAQGVAPDDV-TYTSMIGVLCKSKRLEEAVAMFEQ---MDRNREVPCAYAYNTMIMGYGS 344
+ P+ V S G + ++ + + Q + + A + G +
Sbjct: 63 APLNLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQ----VVAIASHDGGKQA 118
Query: 345 VGKFDEAFSLFER---LKQKGCIPSVIAYNSLLTCLGKKGRVTEAMKIFEAMKKDARPNN 401
+ + + L + V+A S V + +
Sbjct: 119 LETVQRLLPVLCQAHGLTPE----QVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQV 174
Query: 402 TTYNVLIDMLCKAGNFEDALK-FRDAMKEAGLFPN-VMTVNIMVDRLCKAQKLDEAFSIF 459
+ L A L P V+ + + + +
Sbjct: 175 VAIASNGGGKQALETVQRLLPVLCQAHG---LTPQQVVAIASNGGGKQALETVQRLLPVL 231
Query: 460 EGMDHKTCTPDAVTFCSLIDGLGKNGRVDDAYKFYEKMLDTDQIPN-AILYTSLIRNFFK 518
H V S G V + P + S
Sbjct: 232 C-QAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLT--PQQVVAIASNSGGKQA 288
Query: 519 HGRKEDGHKIYKEMVQRGCSPDLMLLNTYMDCVFKA-GETEKGRALFEEIKAQGFVPDVQ 577
+ + + +P ++ +A ++ + +A G P Q
Sbjct: 289 LETVQRLLPVLCQAHGL--TPQQVVAIASNGGGKQALETVQRLLPVLC--QAHGLTPQ-Q 343
Query: 578 SYSILIHGLVKAGFAHETDQLFYAMKKQGCVLDTRAYNTVVDGFCKSGKVNKAYQLLEEM 637
+I H K + ++ C++ +
Sbjct: 344 VVAIASHDGGK--------------QALE------TVQRLLPVLCQAHGLTPEQ------ 377
Query: 638 KTKGHYPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELN---TVIYSSLIDGFGKV 694
VV S G ++ + + +A L V +S G +
Sbjct: 378 --------VVAIASNGGGKQALETVQRLLPVLCQA----HGLTPEQVVAIASHDGGKQAL 425
Query: 695 GRIDEAYLIMEELMQ-KGLTPN-AYTWNCLLDALVKAEEISEAFVCFQSMKDLKCTPNH 751
+ + L Q GLTP E I L N
Sbjct: 426 ETVQRL---LPVLCQAHGLTPQQVVAIASNGGGRPALESIVAQLSRPD--PALAALTND 479
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 58.2 bits (141), Expect = 7e-09
Identities = 32/269 (11%), Positives = 63/269 (23%), Gaps = 32/269 (11%)
Query: 241 GRVDDALFLLDEMKNNAFSVD---IVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGVAPDD 297
V L +L + A + +V + V +A G+ P
Sbjct: 188 ETVQRLLPVLCQ----AHGLTPQQVVAIASNGGGKQALETVQRLLPVLC--QAHGLTPQQ 241
Query: 298 V-TYTSMIGVLCKSKRLEEAVAMFEQ---MDRNREVPCAYAYNTMIMGYGSVGKFDEAFS 353
V S G + ++ + + Q + A + G ++
Sbjct: 242 VVAIASNGGGKQALETVQRLLPVLCQAHGLTPQ----QVVAIASNSGGKQALETVQRLLP 297
Query: 354 LFER---LKQKGCIPSVIAYNSLLTCLGKKGRVTEAMKIF-EAMKKDARPNNT-TYNVLI 408
+ + L + V+A S V + + +A P
Sbjct: 298 VLCQAHGLTPQ----QVVAIASNGGGKQALETVQRLLPVLCQAHGLT--PQQVVAIASHD 351
Query: 409 DMLCKAGNFEDALKFRDAMKEAGLFPN-VMTVNIMVDRLCKAQKLDEAFSIFEGMDHKTC 467
+ L + GL P V+ + + + + H
Sbjct: 352 GGKQALETVQRLLPVLC--QAHGLTPEQVVAIASNGGGKQALETVQRLLPVLC-QAHGLT 408
Query: 468 TPDAVTFCSLIDGLGKNGRVDDAYKFYEK 496
V S G V +
Sbjct: 409 PEQVVAIASHDGGKQALETVQRLLPVLCQ 437
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 57.8 bits (140), Expect = 1e-08
Identities = 32/271 (11%), Positives = 65/271 (23%), Gaps = 32/271 (11%)
Query: 241 GRVDDALFLLDEMKNNAFSVD---IVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGVAPDD 297
V L +L + A + +V + V +A G+ P+
Sbjct: 86 ETVQRLLPVLCQ----AHGLTPQQVVAIASHDGGKQALETVQRLLPVL--CQAHGLTPEQ 139
Query: 298 V-TYTSMIGVLCKSKRLEEAVAMFEQ---MDRNREVPCAYAYNTMIMGYGSVGKFDEAFS 353
V S G + ++ + + Q + + A + G ++
Sbjct: 140 VVAIASHDGGKQALETVQALLPVLCQAHGLTPEQ----VVAIASNGGGKQALETVQRLLP 195
Query: 354 LFER---LKQKGCIPSVIAYNSLLTCLGKKGRVTEAMKIF-EAMKKDARPNNT-TYNVLI 408
+ + L + V+A S V + + +A P
Sbjct: 196 VLCQAHGLTPQ----QVVAIASNGGGKQALETVQRLLPVLCQAHGLT--PQQVVAIASNG 249
Query: 409 DMLCKAGNFEDALKFRDAMKEAGLFPN-VMTVNIMVDRLCKAQKLDEAFSIFEGMDHKTC 467
+ L + GL P V+ + + + + H
Sbjct: 250 GGKQALETVQRLLP--VLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLC-QAHGLT 306
Query: 468 TPDAVTFCSLIDGLGKNGRVDDAYKFYEKML 498
V S G V +
Sbjct: 307 PQQVVAIASNGGGKQALETVQRLLPVLCQAH 337
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 45.5 bits (108), Expect = 7e-05
Identities = 19/159 (11%), Positives = 41/159 (25%), Gaps = 20/159 (12%)
Query: 241 GRVDDALFLLD---EMKNNAFSVDIVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGVAPDD 297
V L +L + +V + V +A G+ P+
Sbjct: 324 ETVQRLLPVLCQAHGLTPQ----QVVAIASHDGGKQALETVQRLLPVL--CQAHGLTPEQ 377
Query: 298 V-TYTSMIGVLCKSKRLEEAVAMFEQ-MDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLF 355
V S G + ++ + + Q E A + G ++ +
Sbjct: 378 VVAIASNGGGKQALETVQRLLPVLCQAHGLTPE--QVVAIASHDGGKQALETVQRLLPVL 435
Query: 356 ER---LKQKGCIPSVIAYNSLLTCLGKKGRVTEAMKIFE 391
+ L + V+A S + + +
Sbjct: 436 CQAHGLTPQ----QVVAIASNGGGRPALESIVAQLSRPD 470
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 62.8 bits (153), Expect = 2e-10
Identities = 70/421 (16%), Positives = 134/421 (31%), Gaps = 47/421 (11%)
Query: 95 VLRRLKDVNLAINYFRWVERKTD--QAHSLEAYNSLLMVMAVSKNFEPLEEILGEMSLAG 152
L A+ + D A L A+SK L+E G++ A
Sbjct: 82 ANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSK----LKEKFGDIDTAT 137
Query: 153 IGPTNNTCIELVVSCVKSKMLREAFDIIQTMRKFKFRPAFTAYTTLIGALATVRESNLML 212
PT + K + L + FK F Y A + L
Sbjct: 138 ATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNL 197
Query: 213 NLFHQMQELGYEVSVHLFTTLIRVFAREGRVDDALFLLDEMKNNAFSVDIVLYNVCIDCF 272
Y+ + FT R+F ++ L +E + + I L + I F
Sbjct: 198 YKRSPES---YDKADESFTKAARLF------EEQLDKNNEDEKLKEKLAISLEHTGIFKF 248
Query: 273 GKVGKVDMAWKFFHEMKAQGVAPDDVTYTSMIGVLCKSKRLEEAVAMFEQ-MDRNREVPC 331
A + KA + P +Y M ++ E F++ + +
Sbjct: 249 -LKNDPLGAHEDIK--KAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSN--N 303
Query: 332 AYAYNTMIMGYGSVGKFDEAFSLFER---LKQKGCIPSVIAYNSLLTCLGKKGRVTEAMK 388
+ Y + +D+A F++ L + ++ Y L ++ + +
Sbjct: 304 SSVYYHRGQMNFILQNYDQAGKDFDKAKELDPE----NIFPYIQLACLAYRENKFDDCET 359
Query: 389 IFE-AMKKDARPNN-TTYNVLIDMLCKAGNFEDALK-FRDAMK----EAGLFPN---VMT 438
+F A +K P N ++L +F+ ALK + A++ G++ ++
Sbjct: 360 LFSEAKRKF--PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVG 417
Query: 439 VNIMVDRLCKAQKLDEAFSIFEGMDHKTCT--PD-AVTFCSLIDGLGKNGRVDDAYKFYE 495
++ R + EA ++ E K P L + +D+A +E
Sbjct: 418 KATLLTRNPTVENFIEATNLLE----KASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFE 473
Query: 496 K 496
+
Sbjct: 474 E 474
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 48.2 bits (115), Expect = 1e-05
Identities = 25/174 (14%), Positives = 56/174 (32%), Gaps = 22/174 (12%)
Query: 270 DCFGKVGKVDMAWKFFHEMKAQGVAPDDV-TYTSMIGVLCKSKRLEEAVAMFEQM-DRNR 327
+ K D F +A+ P+ +L ++A+ ++ +
Sbjct: 346 CLAYRENKFDDCETLFS--EAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELEN 403
Query: 328 EVPCAY-----AYN--TMIMGYGSVGKFDEAFSLFER-LKQKGCIP-SVIAYNSLLTCLG 378
++ Y T++ +V F EA +L E+ K P S A L
Sbjct: 404 KLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD---PRSEQAKIGLAQMKL 460
Query: 379 KKGRVTEAMKIFE-AMKKDARPNNT-TYNVLIDMLCKAGNFEDALKFRDAMKEA 430
++ + EA+ +FE + + +A + ++ + +
Sbjct: 461 QQEDIDEAITLFEESADLA--RTMEEKLQAIT--FAEAAKVQQRIRSDPVLAKK 510
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 6e-04
Identities = 36/194 (18%), Positives = 68/194 (35%), Gaps = 17/194 (8%)
Query: 311 KRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLFER-LKQKGCIPSVIA 369
+ EE + + ++ +E A + + A ++ ++ P V +
Sbjct: 217 RLFEEQLDKNNEDEKLKEK-LAISLEHTGIFKFLKNDPLGAHEDIKKAIELF---PRVNS 272
Query: 370 YNSLLTCLGKKGRVTEAMKIFE-AMKKDARPNN-TTYNVLIDMLCKAGNFEDALK-FRDA 426
Y + + + TE F+ A+K D NN + Y M N++ A K F A
Sbjct: 273 YIYMALIMADRNDSTEYYNYFDKALKLD--SNNSSVYYHRGQMNFILQNYDQAGKDFDKA 330
Query: 427 MKEAGLFPN-VMTVNIMVDRLCKAQKLDEAFSIFE-GMDHKTCTPDAVTFCSLIDGLGKN 484
+ L P + + + K D+ ++F P+ F + I L
Sbjct: 331 KE---LDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEI--LTDK 385
Query: 485 GRVDDAYKFYEKML 498
D A K Y+ +
Sbjct: 386 NDFDKALKQYDLAI 399
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 41.7 bits (98), Expect = 9e-04
Identities = 24/166 (14%), Positives = 54/166 (32%), Gaps = 19/166 (11%)
Query: 306 VLCKSKRLEEAVAMFEQ---MDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLFER-LKQK 361
++K+ ++A+ + + + Y+ + Y SVG + + + L+ K
Sbjct: 15 QFFRNKKYDDAIKYYNWALELKED-----PVFYSNLSACYVSVGDLKKVVEMSTKALELK 69
Query: 362 GCIP-SVIAYNSLLTCLGKKGRVTEAMKIFEAMKKDARPNNTTYNVLIDM-LCKAGNFED 419
P + G+ +AM + + N+ + +++ L K +
Sbjct: 70 ---PDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKL 126
Query: 420 ALKFRDAMKEAGLFPNVMTVNI-----MVDRLCKAQKLDEAFSIFE 460
KF D + T + L + F IF+
Sbjct: 127 KEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFK 172
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 59.0 bits (142), Expect = 2e-09
Identities = 37/227 (16%), Positives = 73/227 (32%), Gaps = 18/227 (7%)
Query: 314 EEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLFERLKQKGCIPSVIAYNSL 373
++ + +++ + + Y + K+ + P + A
Sbjct: 16 QQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEI----KPSSAPELQAVRMF 71
Query: 374 LTCLGKKGRVTEAMKIFE-AMKKDARPNNTTYNVLI-DMLCKAGNFEDALKFRDAMKEAG 431
L R + + M + NTT+ ++ + N + AL+
Sbjct: 72 AEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQGDS-- 129
Query: 432 LFPNVMTVNIMVDRLCKAQKLDEAFSIFEGMDHKTCTPDAVTF---CSLIDGLGKNGRVD 488
L MTV I L K +LD A + M + DA + + ++
Sbjct: 130 LECMAMTVQI----LLKLDRLDLARKELKKM--QDQDEDATLTQLATAWVSLAAGGEKLQ 183
Query: 489 DAYKFYEKMLDTDQIPNAILYTSLIRNFFKHGRKEDGHKIYKEMVQR 535
DAY +++M D P +L GR E + +E + +
Sbjct: 184 DAYYIFQEMADKCS-PTLLLLNGQAACHMAQGRWEAAEGVLQEALDK 229
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 50.9 bits (121), Expect = 7e-07
Identities = 28/247 (11%), Positives = 72/247 (29%), Gaps = 15/247 (6%)
Query: 212 LNLFHQMQELGYEVSVHLFTTLIRVFAREGRVDDALFLLDEMKNNAFSVDIVLYNVCIDC 271
+N +++ E V L R + + + L + + +
Sbjct: 19 INEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFA----EY 74
Query: 272 FGKVGKVDMAWKFFHEMKAQGVAPDDVTYTSMIG-VLCKSKRLEEAVAMFEQMDRNREVP 330
+ D ++ V + T+ M + + + A+ Q D
Sbjct: 75 LASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQGDS----- 129
Query: 331 CAYAYNTMIMGYGSVGKFDEAFSLFERLKQKGC-IPSVIAYNSLLTCLGKKGRVTEAMKI 389
+ + + D A ++++ + + ++ ++ +A I
Sbjct: 130 -LECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYI 188
Query: 390 FEAMKKDARPNNTTYNVLIDMLCKAGNFEDALK-FRDAMKEAGLFPNVMTVNIMVDRLCK 448
F+ M P N G +E A ++A+ + P + +++ +
Sbjct: 189 FQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQH-- 246
Query: 449 AQKLDEA 455
K E
Sbjct: 247 LGKPPEV 253
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 57.7 bits (139), Expect = 1e-08
Identities = 68/485 (14%), Positives = 132/485 (27%), Gaps = 55/485 (11%)
Query: 289 KAQGVAPDDV-TYTSMIGVLCKSKRLEEAVAMFEQ---MDRNREVPCAYAYNTMIMGYGS 344
+A G+ PD V S G + ++ + + Q + ++ A + G +
Sbjct: 285 QAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQ----VVAIASHDGGKQA 340
Query: 345 VGKFDEAFSLFER---LKQKGCIPSVIAYNSLLTCLGKKGRVTEAMKIF-EAMKKDARPN 400
+ + + L V+A S V + + +A P+
Sbjct: 341 LETVQRLLPVLCQAHGLTPD----QVVAIASNGGGKQALETVQRLLPVLCQAHGLT--PD 394
Query: 401 NTTYNVLIDMLCKAGNFEDALKFRDAMKEAGLFPN-VMTVNIMVDRLCKAQKLDEAFSIF 459
+ L + GL P+ V+ + + + +
Sbjct: 395 QVVAIASNGGKQALETVQRLLP--VLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVL 452
Query: 460 E---GMDHKTCTPDAVTFCSLIDGLGKNGRVDDAYKFYEKMLDTDQIPNAILYTSLIRNF 516
G+ V S G V + + S I
Sbjct: 453 CQTHGLTPA----QVVAIASHDGGKQALETVQQLLPVLCQAHGLTP-DQVVAIASNIGGK 507
Query: 517 FKHGRKEDGHKIYKEMVQRGCSPDLMLLNTYMDCVFKA-GETEKGRALFEEIKAQGFVPD 575
+ + + +PD ++ +A ++ + +A G PD
Sbjct: 508 QALATVQRLLPVLCQAHGL--TPDQVVAIASNGGGKQALETVQRLLPVLC--QAHGLTPD 563
Query: 576 VQSYSILIHGLVKAGFAHETDQLFYAMKKQGCVLDT---RAYNTVVDGFCKSGKVNKAYQ 632
Q +I +G K A ET Q + Q L A + + G V +
Sbjct: 564 -QVVAIASNGGGKQ--ALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLP 620
Query: 633 LLEEMKTKGHYPT-VVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNT---VIYSSLI 688
+L + G P VV S G ++ + + +A L V +S
Sbjct: 621 VLC--QAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQA----HGLTPDQVVAIASNG 674
Query: 689 DGFGKVGRIDEAYLIMEELMQKGLTPN-AYTWNCLLDALVKAEEISEAFVCFQSMKDLKC 747
G + + ++ + GLT E + +
Sbjct: 675 GGKQALETVQRLLPVLCQAH--GLTQEQVVAIASNNGGKQALETVQRLLPVLC--QAHGL 730
Query: 748 TPNHV 752
TP+ V
Sbjct: 731 TPDQV 735
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 53.5 bits (128), Expect = 3e-07
Identities = 64/516 (12%), Positives = 123/516 (23%), Gaps = 90/516 (17%)
Query: 276 GKVDMAWKFFHEMKAQGVAPDDV-TYTSMIGVLCKSKRLEEAVAMFEQ---MDRNREVPC 331
V +A G+ P V S G + ++ + + Q + ++
Sbjct: 206 ETVQRLLPVLC--QAHGLTPAQVVAIASHDGGKQALETMQRLLPVLCQAHGLPPDQ---- 259
Query: 332 AYAYNTMIMGYGSVGKFDEAFSLFER---LKQKGCIPS-VIAYNSLLTCLGKKGRVTEAM 387
A + I G ++ + + L P V+A S V +
Sbjct: 260 VVAIASNIGGKQALETVQRLLPVLCQAHGLT-----PDQVVAIASHGGGKQALETVQRLL 314
Query: 388 KIF-EAMKKDARPNNT-TYNVLIDMLCKAGNFEDALKFRDAMKEAGLFPN-VMTVNIMVD 444
+ +A P+ + L + GL P+ V+ +
Sbjct: 315 PVLCQAHGLT--PDQVVAIASHDGGKQALETVQRLLP--VLCQAHGLTPDQVVAIASNGG 370
Query: 445 RLCKAQKLDEAFSIFEGMDHKTCTPDAVTFCSLIDGLGKNGRVDDAYKFYEKM--LDTDQ 502
+ + + TPD V + G V + L DQ
Sbjct: 371 GKQALETVQRLLPVLC--QAHGLTPDQVVAIASNGGKQALETVQRLLPVLCQAHGLTPDQ 428
Query: 503 IPNAILYTSLIRNFFKHGRKEDGHKIYKEMVQRGCSPDLMLLNTYMDCVFKAGETEKGRA 562
+ S + R
Sbjct: 429 ---VVAIASHDGGKQALETVQ-------------------------------------RL 448
Query: 563 LFEEIKAQGFVPD-VQSYSILIHGLVKAGFAHETDQLFY-AMKKQGCVLDTRAYNTVVDG 620
L + G P V + + G + + A A + + G
Sbjct: 449 LPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLPVLCQAHGLT--PDQVVAIASNIGG 506
Query: 621 FCKSGKVNKAYQLLEEMKTKGHYPT-VVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIEL 679
V + +L + G P VV S G ++ + + +A L
Sbjct: 507 KQALATVQRLLPVLC--QAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQA----HGL 560
Query: 680 NT---VIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPN-AYTWNCLLDALVKAEEISEA 735
V +S G + + ++ + GLT + E +
Sbjct: 561 TPDQVVAIASNGGGKQALETVQRLLPVLCQAH--GLTQVQVVAIASNIGGKQALETVQRL 618
Query: 736 FVCFQSMKDLKCTPNHV-TYSIIINGLCRVRKFNKA 770
+ TP V + G + +
Sbjct: 619 LPVLC--QAHGLTPAQVVAIASHDGGKQALETVQRL 652
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 45.0 bits (106), Expect = 1e-04
Identities = 75/498 (15%), Positives = 137/498 (27%), Gaps = 53/498 (10%)
Query: 274 KVGKVDMAWKFFHEMKAQGVAPDDV-TYTSMIGVLCKSKRLEEAVAMFEQ---MDRNREV 329
+ V +A G+ PD V S G + ++ + + Q + ++ V
Sbjct: 509 ALATVQRLLPVLC--QAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVV 566
Query: 330 PCAYAYNTMIMGYGSVGKFDEAFSLFER---LKQKGCIPSVIAYNSLLTCLGKKGRVTEA 386
A + G ++ + + L Q V+A S + V
Sbjct: 567 ----AIASNGGGKQALETVQRLLPVLCQAHGLTQV----QVVAIASNIGGKQALETVQRL 618
Query: 387 MKIFEAMKKDARPNNTTYNVLIDMLCKAGNFEDALK-FRDAMKEAGLFPN-VMTVNIMVD 444
+ + + L A GL P+ V+ +
Sbjct: 619 LPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAH---GLTPDQVVAIASNGG 675
Query: 445 RLCKAQKLDEAFSIFEGMDHKTCTPD-AVTFCSLIDGLGKNGRVDDAYKFYEK--MLDTD 501
+ + + T + V S G V + L D
Sbjct: 676 GKQALETVQRLLPVLCQAH--GLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPD 733
Query: 502 QIPNAILYTSLIRNFFKHGRKEDGHKIYKEMVQRGCSPDLMLLNTYMDCVFKAGETEKGR 561
Q + S + + + G +P ++ +A ET + R
Sbjct: 734 Q---VVAIASNGGGKQALETVQRLLPVLCQ--AHGLTPAQVVAIASNIGGKQALETVQ-R 787
Query: 562 ALFEEIKAQGFVPDVQSYSILIHGLVKAGFAHETDQLFYAMKKQGCVLDTRAYNTVVDGF 621
L + G Q +I + K A ET Q + Q V
Sbjct: 788 LLPVLCQDHGLTLA-QVVAIASNIGGKQ--ALETVQRLLPVLCQ----AHGLTQDQVVAI 840
Query: 622 CKSGKVNKA---YQLLEEMKTKGHYPT---VVTYGSVIDGLAKIDRLDEAYMLFEEAKSK 675
+ +A Q L + + H T VV S I G ++ + L +
Sbjct: 841 ASNIGGKQALETVQRLLPVLCQDHGLTPDQVVAIASNIGGKQALETVQRL--LPVLCQDH 898
Query: 676 GIELNTVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPN-AYTWNCLLDALVKAEEISE 734
G+ L+ V+ + G + + ++ + GLTP+ E +
Sbjct: 899 GLTLDQVVAIASNGGKQALETVQRLLPVLCQDH--GLTPDQVVAIASNSGGKQALETVQR 956
Query: 735 AFVCFQSMKDLKCTPNHV 752
+D TPN V
Sbjct: 957 LLPVLC--QDHGLTPNQV 972
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 56.4 bits (137), Expect = 2e-08
Identities = 48/278 (17%), Positives = 110/278 (39%), Gaps = 36/278 (12%)
Query: 236 VFAREGRVDDALFLLD---EMKNNAFSVDIVLYNVCIDCFGKVGKVDMAWKFFHEMKAQG 292
+ + R+D + + Y+ + + + G++ A + + A
Sbjct: 42 IHFQCRRLDRSAHFSTLAIKQNPL----LAEAYSNLGNVYKERGQLQEAIEHYR--HALR 95
Query: 293 VAPDDV-TYTSMIGVLCKSKRLEEAVAMFEQ---MDRNREVPCAYAYNTMIMGYGSVGKF 348
+ PD + Y ++ L + +E AV + + + + + ++G+
Sbjct: 96 LKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD----LYCVRSDLGNLLKALGRL 151
Query: 349 DEAFSLFER-LKQKGCIP-SVIAYNSLLTCLGKKGRVTEAMKIFE-AMKKDARPNNT-TY 404
+EA + + + ++ + P +A+++L +G + A+ FE A+ D PN Y
Sbjct: 152 EEAKACYLKAIETQ---PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD--PNFLDAY 206
Query: 405 NVLIDMLCKAGNFEDALK-FRDAMKEAGLFPN-VMTVNIMVDRLCKAQKLDEAFSIFE-G 461
L ++L +A F+ A+ + A+ L PN + + + +D A +
Sbjct: 207 INLGNVLKEARIFDRAVAAYLRALS---LSPNHAVVHGNLACVYYEQGLIDLAIDTYRRA 263
Query: 462 MDHKTCTPD-AVTFCSLIDGLGKNGRVDDAYKFYEKML 498
++ + P +C+L + L + G V +A Y L
Sbjct: 264 IELQ---PHFPDAYCNLANALKEKGSVAEAEDCYNTAL 298
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 49.5 bits (119), Expect = 3e-06
Identities = 37/196 (18%), Positives = 79/196 (40%), Gaps = 24/196 (12%)
Query: 346 GKFDEAFSLFER-LKQKGCIP-SVIAYNSLLTCLGKKGRVTEAMKIFE-AMKKDARPNN- 401
G F+ A + +Q+ P + L + + R+ + A+K++ P
Sbjct: 13 GDFEAAERHCMQLWRQE---PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN--PLLA 67
Query: 402 TTYNVLIDMLCKAGNFEDALK-FRDAMKEAGLFPN-VMTVNIMVDRLCKAQKLDEAFSIF 459
Y+ L ++ + G ++A++ +R A++ L P+ + + L A ++ A +
Sbjct: 68 EAYSNLGNVYKERGQLQEAIEHYRHALR---LKPDFIDGYINLAAALVAAGDMEGAVQAY 124
Query: 460 EGMDHKTCT--PD-AVTFCSLIDGLGKNGRVDDAYKFYEKMLDTDQIPN-AILYTSLIRN 515
PD L + L GR+++A Y K ++T PN A+ +++L
Sbjct: 125 V----SALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ--PNFAVAWSNLGCV 178
Query: 516 FFKHGRKEDGHKIYKE 531
F G +++
Sbjct: 179 FNAQGEIWLAIHHFEK 194
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 4e-05
Identities = 34/193 (17%), Positives = 76/193 (39%), Gaps = 28/193 (14%)
Query: 236 VFAREGRVDDALFLLD---EMK-NNAFSVDIVLYNVCIDCFGKVGKVDMAWKFFHEMKAQ 291
V D A+ + N+A +V N+ + + G +D+A + +A
Sbjct: 212 VLKEARIFDRAVAAYLRALSLSPNHA----VVHGNLAC-VYYEQGLIDLAIDTYR--RAI 264
Query: 292 GVAPDDV-TYTSMIGVLCKSKRLEEAVAMFEQ---MDRNREVPCAYAYNTMIMGYGSVGK 347
+ P Y ++ L + + EA + + A + N + G
Sbjct: 265 ELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPT----HADSLNNLANIKREQGN 320
Query: 348 FDEAFSLFER-LKQKGCIPS-VIAYNSLLTCLGKKGRVTEAMKIFE-AMKKDARPNNT-T 403
+EA L+ + L+ P A+++L + L ++G++ EA+ ++ A++ P
Sbjct: 321 IEEAVRLYRKALEVF---PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS--PTFADA 375
Query: 404 YNVLIDMLCKAGN 416
Y+ + + L + +
Sbjct: 376 YSNMGNTLKEMQD 388
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 56.8 bits (137), Expect = 2e-08
Identities = 51/356 (14%), Positives = 107/356 (30%), Gaps = 44/356 (12%)
Query: 192 FTAYTTLIG--ALATVRESNLMLNL-FHQMQELGYEVSVHLFTTLIRVFAREGRVDDALF 248
+ A+ L+ L E +L+L L + + L+ + + E + A
Sbjct: 234 YEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAED 293
Query: 249 LLDEMKNNAFSVDIVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGVAPDDV-TYTSMIGVL 307
L + S D+ D + K + P ++ Y + L
Sbjct: 294 YLSSINGLEKSSDL--LLCKADTLFVRSRFIDVLAIT--TKILEIDPYNLDVYPLHLASL 349
Query: 308 CKSKRLEEAVAMFEQ-MDRNREVPCAYAYNTMIMG--YGSVGKFDEAFSLFER---LKQK 361
+S + + +DR+ E + +G Y V K EA F + + +
Sbjct: 350 HESGEKNKLYLISNDLVDRHPEKAVTW-LA---VGIYYLCVNKISEARRYFSKSSTMDPQ 405
Query: 362 GCIPSVIAYNSLLTCLGKKGRVTEAMKIF----EAMKKDARPNNTTYNVLIDMLCKAGNF 417
A+ +G +A+ + + P + + GN
Sbjct: 406 ----FGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQL----GNI 457
Query: 418 EDALK-FRDAMKEAGLFP-NVMTVNIMVDRLCKAQKLDEAFSIFE-----GMDHKTCTPD 470
A + + + LF + + +N + + A + F+ ++
Sbjct: 458 LLANEYLQSSYA---LFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKP 514
Query: 471 -AVTFCSLIDGLGKNGRVDDAYKFYEKMLDTDQIPN-AILYTSLIRNFFKHGRKED 524
A T+ +L K D A + L N A ++T++ +
Sbjct: 515 WAATWANLGHAYRKLKMYDAAIDALNQGLLLS--TNDANVHTAIALVYLHKKIPGL 568
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 46.8 bits (111), Expect = 3e-05
Identities = 76/507 (14%), Positives = 151/507 (29%), Gaps = 66/507 (13%)
Query: 285 FHEMKAQGVAPDDVTYTSMIGVLCKSKRLEEAVAMFEQMD-RNREVPCAY---------- 333
F K + + + V C + A + + D NR C Y
Sbjct: 105 FVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLY 164
Query: 334 AYNTMIMGYGSVGKFDEAFSLFERL--KQKGCIPSVIAYNSLLTCLGKKGRVTEAMKIF- 390
+ + G F + +L + G A + +
Sbjct: 165 DWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYK 224
Query: 391 EAMKKDARPNNT-TYNVLIDMLCKAGNFE----DALKFRDAMKEAGLFPNVMTVNIMVDR 445
EA+ D ++ L+ + E L + KE F + + +++
Sbjct: 225 EALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSL-YMLKLNK 281
Query: 446 LCKAQKLDEAFSIFEGMDHKTCTPDAVTFCSLIDGLGKNGRVDDAYKFYEKMLDTDQIPN 505
+L A ++ + D + D L R D K+L+ D P
Sbjct: 282 TSHEDELRRAEDYLSSINGLEKSSDLLL--CKADTLFVRSRFIDVLAITTKILEID--PY 337
Query: 506 -AILYTSLIRNFFKHGRKEDGHKIYKEMVQRGCSPDLMLLNTYMDCVFKA-GETEKGRAL 563
+Y + + + G K + I ++V R P+ + + + + + R
Sbjct: 338 NLDVYPLHLASLHESGEKNKLYLISNDLVDR--HPEKAVTWLAVGIYYLCVNKISEARRY 395
Query: 564 FEEIKAQGFVPD-VQSYSILIHGLVKAGFAHETDQLFYAMK--------KQGCVLDTRAY 614
F K+ P ++ H G E DQ A+ QG L Y
Sbjct: 396 FS--KSSTMDPQFGPAWIGFAHSFAIEG---EHDQ---AISAYTTAARLFQGTHL---PY 444
Query: 615 NTVVDGFCKSGKVNKAYQLLEE-MKTKGHYPTVVTY-GSVIDGLAKIDRLDEAYMLFEEA 672
+ + G + A + L+ + P ++ G V + A F+ A
Sbjct: 445 LFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVV---AFNKSDMQTAINHFQNA 501
Query: 673 KSKGIELNTV------IYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPN-AYTWNCLLDA 725
+ + +++L + K+ D A + + + L+ N A +
Sbjct: 502 LLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLL--LSTNDANVHTAIALV 559
Query: 726 LVKAEEISEAFVCFQSMKDLKCTPNHV 752
+ + A + L +PN +
Sbjct: 560 YLHKKIPGLAITHLH--ESLAISPNEI 584
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 43.3 bits (102), Expect = 3e-04
Identities = 19/172 (11%), Positives = 45/172 (26%), Gaps = 16/172 (9%)
Query: 271 CFGKVGKVDMAWKFFHEMKAQGVAPDDV-TYTSMIGVLCKSKRLEEAVAM---FEQMDRN 326
+ + D A + + +A V + ++ + E + + + +
Sbjct: 209 VYTNLSNFDRAKECY--KEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKE 266
Query: 327 REVPCAYAYNTMIMGYGSVGKFDEAFSLFERLKQKGCIPSVIAYNSLLTCLGKKGRVTEA 386
Y + + A + S L + R +
Sbjct: 267 DAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLE--KSSDLLLCKADTLFVRSRFIDV 324
Query: 387 MKIFE-AMKKDARPNN-TTYNVLIDMLCKAGNFEDALK-FRDAMKEAGLFPN 435
+ I ++ D P N Y + + L ++G D + P
Sbjct: 325 LAITTKILEID--PYNLDVYPLHLASLHESGEKNKLYLISNDLVD---RHPE 371
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 54.6 bits (132), Expect = 3e-08
Identities = 26/172 (15%), Positives = 58/172 (33%), Gaps = 19/172 (11%)
Query: 272 FGKVGKVDMAWKFFHEMKAQGVAPDDV-TYTSMIGVLCKSKRLEEAVAMFEQ-----MDR 325
F + +A + + KA + + G L + KR EEA + +
Sbjct: 81 FQTEMEPKLADEEYR--KALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYP 138
Query: 326 NREVPCAYAYNTMIMGYGSVGKFDEAFSLFER-LKQKGCIPS-VIAYNSLLTCLGKKGRV 383
R + + + + + K +A FE+ L+ + + L K+
Sbjct: 139 ER----SRVFENLGLVSLQMKKPAQAKEYFEKSLRLN---RNQPSVALEMADLLYKEREY 191
Query: 384 TEAMKIFEAMKKDARPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEAGLFPN 435
A + ++ + N + + I + + + A + +K L+P
Sbjct: 192 VPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKR--LYPG 241
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 1e-04
Identities = 26/183 (14%), Positives = 60/183 (32%), Gaps = 20/183 (10%)
Query: 288 MKAQGVAPDDV-TYTSMIGVLCKSKRLEEAVAMFEQ---MDRNREVPCAYAYNTMIMGYG 343
+K + Y + + E+A + +D + A A+ + + +
Sbjct: 27 LKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPS----SADAHAALAVVFQ 82
Query: 344 SVGKFDEAFSLFER-LKQKGCIP-SVIAYNSLLTCLGKKGRVTEAMKIFE-AMKKDARPN 400
+ + A + + L + N+ L ++ R EA + A + P
Sbjct: 83 TEMEPKLADEEYRKALASD---SRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPE 139
Query: 401 NT-TYNVLIDMLCKAGNFEDALK-FRDAMKEAGLFPN-VMTVNIMVDRLCKAQKLDEAFS 457
+ + L + + A + F +++ L N M D L K ++ A
Sbjct: 140 RSRVFENLGLVSLQMKKPAQAKEYFEKSLR---LNRNQPSVALEMADLLYKEREYVPARQ 196
Query: 458 IFE 460
++
Sbjct: 197 YYD 199
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 53.0 bits (128), Expect = 2e-07
Identities = 25/234 (10%), Positives = 67/234 (28%), Gaps = 36/234 (15%)
Query: 295 PDDV-TYTSMIGVLCKSKRLEEAVAMFEQ--------------MDRNREVPCAYAYNTMI 339
D +L K +L+EA F++ + + +
Sbjct: 68 MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQA 127
Query: 340 MGYGSVGKFDEAFSLFERLKQKGCIP-SVIAYNSLLTCLGKKGRVTEAMKIFE-AMKKDA 397
+ + A + +++ + C K+G +A+ + A K
Sbjct: 128 LDAFDGADYTAAITFLDKILEVC--VWDAELRELRAECFIKEGEPRKAISDLKAASKLK- 184
Query: 398 RPNNTT-YNVLIDMLCKAGNFEDALK-----------FRDAMKEAGLFPNVMTVNIMVDR 445
+NT + + + + G+ E +L + + + +
Sbjct: 185 -SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEE 243
Query: 446 LCKAQKLDEAFSIFE---GMDHKTCTPDAVTFCSLIDGLGKNGRVDDAYKFYEK 496
L + + +A S +E + + + K+ + +A + +
Sbjct: 244 LIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSE 297
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307 | Back alignment and structure |
|---|
Score = 51.4 bits (123), Expect = 6e-07
Identities = 28/226 (12%), Positives = 66/226 (29%), Gaps = 19/226 (8%)
Query: 223 YEVSVHLFTTLIRVFAREGRVDDALFLLDE-----MKNNAFSVDIVLYNVCIDCFGKVGK 277
Y+ + + F +++ A + N + + + +
Sbjct: 32 YDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQR 91
Query: 278 VDMAWKFFH---EMKAQGVAPDDV-TYTSMIGVLCKSKRLEEAVAMFEQ-----MDRNRE 328
+ A ++ M + PD G L + L +AV +++Q + R
Sbjct: 92 MPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEPLDLSKAVHLYQQAAAVFENEERL 151
Query: 329 VPCAYAYNTMIMGYGSVGKFDEAFSLFER----LKQKGCIPSV-IAYNSLLTCLGKKGRV 383
A KFDEA + ++ K+ P+ + + +
Sbjct: 152 RQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADY 211
Query: 384 TEAMKIFEAMKKDARPNNTTYNVLIDMLCKAGNFEDALKFRDAMKE 429
A K + + ++ L +A + +D + +
Sbjct: 212 VAAQKCVRESYSIPGFSGSEDCAALEDLLQAYDEQDEEQLLRVCRS 257
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 51.3 bits (123), Expect = 1e-06
Identities = 25/214 (11%), Positives = 65/214 (30%), Gaps = 24/214 (11%)
Query: 312 RLEEAVAMFEQ---MDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLFER-LKQKGCIP-S 366
Q + ++ A + + F+EA ++ ++ P
Sbjct: 2 SHMNGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELD---PNE 58
Query: 367 VIAYNSLLTCLGKKGRVTEAMKIFE-AMKKDARPNNT-TYNVLIDMLCKAGNFEDALKFR 424
+ Y+++ C G + + ++ A++ P+++ GNF DA+
Sbjct: 59 PVFYSNISACYISTGDLEKVIEFTTKALEIK--PDHSKALLRRASANESLGNFTDAMFDL 116
Query: 425 DAMKEAGLFPNVMTVNIMVDRLCKAQKLDEAFSIFEGMDHKTCTPDAVTFCSLIDGLGKN 484
+ G F ++ M++R Q + + + L N
Sbjct: 117 SVLSLNGDFDGA-SIEPMLERNLNKQAMKVLNENLSKDEGR-----------GSQVLPSN 164
Query: 485 GRVDDAYKFYEKMLDTDQIPNAILYTSLIRNFFK 518
+ + ++ L+ + + Y +
Sbjct: 165 TSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSD 198
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 50.1 bits (120), Expect = 2e-06
Identities = 49/314 (15%), Positives = 86/314 (27%), Gaps = 33/314 (10%)
Query: 191 AFTAYTTLIGALATVRESNLMLNLFHQMQELGYEVSVHLFTTLIRVFAREGRVDDALFLL 250
+ + E L NL Q ++ E +V + +
Sbjct: 115 DLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIF 174
Query: 251 DEMKNNAFSVDIVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGVAPDDVTYTSMIGVLCKS 310
D + Y+ + + + A +
Sbjct: 175 DSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKST------------ 222
Query: 311 KRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLFER-LKQKGCIPSVIA 369
++ D RE A A + + +A L + + P+ +
Sbjct: 223 DMYHSLLSANTVDDPLRE-NAALALCYTGIFHFLKNNLLDAQVLLQESINLH---PTPNS 278
Query: 370 YNSLLTCLGKKGRVTEAMKIFE-AMKKDARPNN-TTYNVLIDMLCKAGNFEDALK-FRDA 426
Y L L K E K F+ A+ + P TY M ++++A + F+ A
Sbjct: 279 YIFLALTLADKENSQEFFKFFQKAVDLN--PEYPPTYYHRGQMYFILQDYKNAKEDFQKA 336
Query: 427 MKEAGLFPN-VMTVNIMVDRLCKAQKLDEAFSIFEGMDHKTCT--PD-AVTFCSLIDGLG 482
L P V + L K K E+ + F +T P + L
Sbjct: 337 QS---LNPENVYPYIQLACLLYKQGKFTESEAFFN----ETKLKFPTLPEVPTFFAEILT 389
Query: 483 KNGRVDDAYKFYEK 496
G D A K Y+
Sbjct: 390 DRGDFDTAIKQYDI 403
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 50.1 bits (120), Expect = 3e-06
Identities = 25/219 (11%), Positives = 57/219 (26%), Gaps = 38/219 (17%)
Query: 236 VFAREGRVDDALFLLDE----MKNNAFSVDIVLYNVCIDCFGKVGKVDMAWKFFHEMKAQ 291
++ +A + N + + K GK + FF+ + +
Sbjct: 319 MYFILQDYKNAKEDFQKAQSLNPENVYP----YIQLAC-LLYKQGKFTESEAFFN--ETK 371
Query: 292 GVAPDDV-TYTSMIGVLCKSKRLEEAVAMFEQ-MDRNREVPCAY--------------AY 335
P T +L + A+ ++ +
Sbjct: 372 LKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQ 431
Query: 336 NTMIMGYGSVGKFDEAFSLFER-LKQKGCIP-SVIAYNSLLTCLGKKGRVTEAMKIFE-A 392
++ KF+ A L + + P S A L + ++ EA+++FE +
Sbjct: 432 SSQDPTQLDEEKFNAAIKLLTKACELD---PRSEQAKIGLAQLKLQMEKIDEAIELFEDS 488
Query: 393 MKKDARPNNT-TYNVLIDMLCKAGNFEDALKFRDAMKEA 430
+A + L+ +
Sbjct: 489 AILA--RTMDEKLQATT--FAEAAKIQKRLRADPIISAK 523
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 45.5 bits (108), Expect = 6e-05
Identities = 30/224 (13%), Positives = 57/224 (25%), Gaps = 36/224 (16%)
Query: 306 VLCKSKRLEEAVAMFEQ---MDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLFER-LKQK 361
+K EA+ ++ +D N Y+ + Y S G ++ + L+ K
Sbjct: 34 HFFTAKNFNEAIKYYQYAIELDPN----EPVFYSNISACYISTGDLEKVIEFTTKALEIK 89
Query: 362 GCIPS-VIAYNSLLTCLGKKGRVTEAMKIFEAMKKDARPNNTTYNVLIDMLCKAGNFEDA 420
P A + G T+AM + + + + +++ + A
Sbjct: 90 ---PDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLER----NLNKQA 142
Query: 421 LKFRDAMKEAGLFPNVMTVNIMVDRLCKAQKLDEAFSIFEGMDHKTCTPDAVTFCSLIDG 480
+K + L L F IF+ +
Sbjct: 143 MKVLNENLSKDE-------GRGSQVLPSNTSLASFFGIFD-------------SHLEVSS 182
Query: 481 LGKNGRVDDAYKFYEKMLDTDQIPNAILYTSLIRNFFKHGRKED 524
+ + D AY L Y K
Sbjct: 183 VNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYH 226
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 1e-06
Identities = 35/304 (11%), Positives = 84/304 (27%), Gaps = 57/304 (18%)
Query: 241 GRVDDALFLLDE-MKNNAFSVDIVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGVAPDDVT 299
L M+ + F V I ++ K + + H K + P +
Sbjct: 36 CDFKMCYKLTSVVMEKDPFHASC--LPVHIGTLVELNKANELFYLSH--KLVDLYPSNPV 91
Query: 300 YTSMIGV--LCKSKRLEEAVAMFE---QMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSL 354
+G L + E A +++ A+ + + D+A +
Sbjct: 92 SWFAVGCYYLMVGHKNEHARRYLSKATTLEKT----YGPAWIAYGHSFAVESEHDQAMAA 147
Query: 355 FE---RLKQKGCIPSVIAYNSLLTCLGKKGRVTEAMKIFE-AMKKDARPNNT-TYNVLID 409
+ +L + + + G A + F A+ P + + +
Sbjct: 148 YFTAAQLMKG----CHLPMLYIGLEYGLTNNSKLAERFFSQALSIA--PEDPFVMHEVGV 201
Query: 410 MLCKAGNFEDALKFRDAMKEAGLFPNVMTVNIMVDRLCKAQKLDEAFSIFEGMDHKTCTP 469
+ + G ++ A K+ +A + + ++
Sbjct: 202 VAFQNGEWKTAEKW----------------------------FLDALEKIKAIGNEVTVD 233
Query: 470 D-AVTFCSLIDGLGKNGRVDDAYKFYEKMLDTDQIPN-AILYTSLIRNFFKHGRKEDGHK 527
+L K + +A ++ + L P A Y+++ G E+
Sbjct: 234 KWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI--PQNASTYSAIGYIHSLMGNFENAVD 291
Query: 528 IYKE 531
+
Sbjct: 292 YFHT 295
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 2e-05
Identities = 36/280 (12%), Positives = 81/280 (28%), Gaps = 46/280 (16%)
Query: 241 GRVDDALFLLDEM----KNNAFSVDIVLYNVCIDCFGKVGK-VDMAWKFFHEMKAQGVAP 295
+ ++ +L ++ +N + + V + VG + A ++ KA +
Sbjct: 70 NKANELFYLSHKLVDLYPSNP----VSWFAVGC-YYLMVGHKNEHARRYLS--KATTLEK 122
Query: 296 DDV-TYTSMIGVLCKSKRLEEAVAMFEQ---MDRNREVPCAYAYNTMIMGYGSVGKFDEA 351
+ + ++A+A + + + C + + YG A
Sbjct: 123 TYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG----CHLPMLYIGLEYGLTNNSKLA 178
Query: 352 FSLFER---LKQKGCIPSVIAYNSLLTCLGKKGRVTEAMKIFE-AMKKDARPNNT----- 402
F + + + + + + G A K F A++K N
Sbjct: 179 ERFFSQALSIAPE----DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDK 234
Query: 403 ---TYNVLIDMLCKAGNFEDALK-FRDAMKEAGLFPNVMTVNIMVDRLCKAQKLDEAFSI 458
N L + K + +AL R A+ + + + + A
Sbjct: 235 WEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTY--SAIGYIHSLMGNFENAVDY 292
Query: 459 FE---GMDHKTCTPDAVTFCSLIDGLGKNGRVDDAYKFYE 495
F G+ D + L + +AY +
Sbjct: 293 FHTALGLRRD----DTFSVTMLGHCIEMYIGDSEAYIGAD 328
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 49.8 bits (120), Expect = 2e-06
Identities = 42/246 (17%), Positives = 86/246 (34%), Gaps = 50/246 (20%)
Query: 295 PDDVTYTSM--IGVLCKSK-RLEEAVAMFEQ-MDRNREV-----PC-AYAYNTMIMGYGS 344
P ++ + + S+ R E AV + +Q ++ + P A N + + Y
Sbjct: 24 PA--RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRD 81
Query: 345 VGKFDEAFSLFER-LKQKGCI-----PSVIA-YNSLLTCLGKKGRVTEAMKIFE---AMK 394
K+ +A +L L + P+V A N+L GK+G+ EA + + ++
Sbjct: 82 QNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIR 141
Query: 395 KDARPNN-----TTYNVLIDMLCKAGNFEDALK-FRDA--MKEAGLFPN----VMTVNIM 442
+ + N L + G +E+ ++ A + + L P+ T N +
Sbjct: 142 EKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNL 201
Query: 443 VDRLCKAQKLDEAFSIFE-----------GMDHKTCTPD-AVTFCSLIDGLGKNGRVDDA 490
K K +A ++++ G + + + G+ D
Sbjct: 202 ASCYLKQGKFKQAETLYKEILTRAHEREFGSVD----DENKPIWMHAEEREECKGKQKDG 257
Query: 491 YKFYEK 496
F E
Sbjct: 258 TSFGEY 263
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 1e-04
Identities = 38/202 (18%), Positives = 76/202 (37%), Gaps = 39/202 (19%)
Query: 332 AYAYNTMIMGYGSVGKFDEAFSLFER-LKQKGCI-----PSVIA-YNSLLTCLGKKGRVT 384
+ +++ Y S G+++ A L ++ L+ P V N L + +
Sbjct: 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYK 86
Query: 385 EAMKIFE---AMKKDARPNN-----TTYNVLIDMLCKAGNFEDALK-FRDA--MKEAGLF 433
+A + A+++ + T N L + K G +++A + A ++E L
Sbjct: 87 DAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG 146
Query: 434 PN----VMTVNIMVDRLCKAQ-KLDEAFSIFE----------GMDHKTCTPD-AVTFCSL 477
+ +N + LC+ Q K +E ++ G D P+ A T +L
Sbjct: 147 KDHPDVAKQLNNLA-LLCQNQGKYEEVEYYYQRALEIYQTKLGPDD----PNVAKTKNNL 201
Query: 478 IDGLGKNGRVDDAYKFYEKMLD 499
K G+ A Y+++L
Sbjct: 202 ASCYLKQGKFKQAETLYKEILT 223
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 41.4 bits (98), Expect = 9e-04
Identities = 18/115 (15%), Positives = 37/115 (32%), Gaps = 16/115 (13%)
Query: 299 TYTSMIGVLCKSKRLEEAVAMFEQ-MDRNREV------PC-AYAYNTMIMGYGSVGKFDE 350
T ++ K + ++A ++++ + R E + GK +
Sbjct: 197 TKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKD 256
Query: 351 AFSLFER-LKQKGCI---PSV-IAYNSLLTCLGKKGRVTEAMKIFE---AMKKDA 397
S E K C P+V +L ++G+ A + E +K
Sbjct: 257 GTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQG 311
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 49.8 bits (119), Expect = 2e-06
Identities = 29/207 (14%), Positives = 65/207 (31%), Gaps = 20/207 (9%)
Query: 313 LEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLFER----LKQKGCIPSV- 367
+ +A+ +++ + + + Y +D+A E +
Sbjct: 164 ILQALDIYQNHPLY-SIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIA 222
Query: 368 IAYNSLLTCLGKKGRVTEAMKIFE---AMKKDARPNN--TTYNVLIDMLCKAGNFEDALK 422
I+ ++ + G A++ F+ + ++ P+ L LCKAG + A +
Sbjct: 223 ISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQ 282
Query: 423 F-------RDAMKEAGLFPNVMTVNIMVDRLCKAQKLDEAFSIFEGMDHKTCTPDAVTFC 475
F A + + + +K+ + S FE +
Sbjct: 283 FIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYI--EACAR 340
Query: 476 SLIDGLGKNGRVDDAYKFYEKMLDTDQ 502
S + + A FY K+L +
Sbjct: 341 SAAAVFESSCHFEQAAAFYRKVLKAQE 367
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283 | Back alignment and structure |
|---|
Score = 47.9 bits (115), Expect = 6e-06
Identities = 39/228 (17%), Positives = 74/228 (32%), Gaps = 45/228 (19%)
Query: 312 RLEEAVAMFEQ-MDRNREV-----PC-AYAYNTMIMGYGSVGKFDEAFSLFER-LKQKGC 363
AV + +Q ++ + P A N + + Y K+ EA L L +
Sbjct: 16 PRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREK 75
Query: 364 I-----PSVIA-YNSLLTCLGKKGRVTEAMKIFE---AMKKDARPNN-----TTYNVLID 409
P+V A N+L GK+G+ EA + + +++ N L
Sbjct: 76 TLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLAL 135
Query: 410 MLCKAGNFEDALK-FRDA--MKEAGLFPN----VMTVNIMVDRLCKAQKLDEAFSIFE-- 460
+ G E+ +R A + L P+ T N + K K +A ++++
Sbjct: 136 LCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEI 195
Query: 461 ---------GMDHKTCTPD-AVTFCSLIDGLGKNGRVDDAYKFYEKML 498
G + D + + + D+ + E
Sbjct: 196 LTRAHEKEFGSVN----GDNKPIWMHAEEREESKDKRRDSAPYGEYGS 239
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 3e-05
Identities = 26/159 (16%), Positives = 56/159 (35%), Gaps = 27/159 (16%)
Query: 295 PDDVTYTSM--IGVLCKSK-RLEEAVAMFEQ-MDRNREV-----PC-AYAYNTMIMGYGS 344
PD + + +LC+++ + EE + + ++ P A N + Y
Sbjct: 124 PD--VAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLK 181
Query: 345 VGKFDEAFSLFE------RLKQKGCI-PSV-IAYNSLLTCLGKKGRVTEAMKIFE--AMK 394
GK+ +A +L++ K+ G + + K + ++ E +
Sbjct: 182 QGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWY 241
Query: 395 KDARPNN----TTYNVLIDMLCKAGNFEDALK-FRDAMK 428
K + ++ TT L + + G E A A +
Sbjct: 242 KACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 1e-05
Identities = 27/204 (13%), Positives = 51/204 (25%), Gaps = 30/204 (14%)
Query: 236 VFAREGRVDDALFLLD---EMKNNAFSVDIVLYNVCIDCFGKVGKVDMAWKFFHE-MKAQ 291
+ +A+ + + K N +YN C+ ++ K D+A K
Sbjct: 12 FLFKNNNYAEAIEVFNKLEAKKYN----SPYIYNRRAVCYYELAKYDLAQKDIETYFSKV 67
Query: 292 GVAPDDVTYTSMIG-VLCKSKRLEEAVAMFEQ---MDRNREVPCAYAYNTMIMGYGSVGK 347
G +L K + A+ ++ D Y + + + G
Sbjct: 68 NATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTT----RLDMYGQIGSYFYNKGN 123
Query: 348 FDEAFSLFER---LKQKGCIPSVIAYNSLLTCLGKKGRVTEAMKIFE-AMKKDARPNNT- 402
F A E+ + L +A F ++ PN
Sbjct: 124 FPLAIQYMEKQIRPTTT----DPKVFYELGQAYYYNKEYVKADSSFVKVLELK--PNIYI 177
Query: 403 TYN---VLIDMLCKAGNFEDALKF 423
Y A +
Sbjct: 178 GYLWRARANAAQDPDTKQGLAKPY 201
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 6e-04
Identities = 28/174 (16%), Positives = 48/174 (27%), Gaps = 14/174 (8%)
Query: 332 AYAYNTMIMGYGSVGKFDEAFSLFERLKQKGCIP-SVIAYNSLLTCLGKKGRVTEAMKIF 390
+ EA +F +L+ K S YN C + + A K
Sbjct: 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKK--YNSPYIYNRRAVCYYELAKYDLAQKDI 60
Query: 391 EAMKK--DARPNNT-TYNVLIDMLCKAGNFEDALK-FRDAMKEAGLFPN-VMTVNIMVDR 445
E +A + + +L K G A++ ++ A+ + +
Sbjct: 61 ETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVD---RDTTRLDMYGQIGSY 117
Query: 446 LCKAQKLDEAFSIFE-GMDHKTCTPDAVTFCSLIDGLGKNGRVDDAYKFYEKML 498
A E + T P F L N A + K+L
Sbjct: 118 FYNKGNFPLAIQYMEKQIRPTTTDPKV--FYELGQAYYYNKEYVKADSSFVKVL 169
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 47.2 bits (112), Expect = 2e-05
Identities = 44/363 (12%), Positives = 102/363 (28%), Gaps = 63/363 (17%)
Query: 214 LFHQMQELGYEVSVHLFTTLIRVFAREGRVDDALFLL--------DEMKNNAFSVDIVLY 265
+F++ + E + L + +G+ + AL L E + A +V +
Sbjct: 38 VFYRTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTW 97
Query: 266 NVCIDCFGKVGKVDMAWKFFHEMKAQGVAPDDVTYTSMIG-----------VLCKSKRLE 314
+ +G++ + K + V + + + C + E
Sbjct: 98 GNYAWVYYHMGRLSDVQIYVD--KVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNE 155
Query: 315 EAVAMFEQ-MDRNREVPCAY-AYNTMIMGYGSVGKFDEAFSLFER-LKQKGCIPS-VIAY 370
A FE+ +++ + P + A + ++ P
Sbjct: 156 RAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN---PDNQYLK 212
Query: 371 NSLLTCLGK----KGRVTEAMKIFE-AMKKDARPNNT-TYNVLIDMLCKAGNFEDALK-F 423
L L K E K+ E A++K P T + + A++
Sbjct: 213 VLLALKLHKMREEGEEEGEGEKLVEEALEKA--PGVTDVLRSAAKFYRRKDEPDKAIELL 270
Query: 424 RDAM-----------------KEAGLFPNVMTVNIMVDRLCKAQKLDEAFSIFEGMDHKT 466
+ A+ + + N M + + + A + + K
Sbjct: 271 KKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLK----KA 326
Query: 467 CT--PD-AVTFCSLIDGLGKNGRVDDAYKFYEKMLDTDQIPN--AILYTSLIRNFFKHGR 521
+ L + ++A +++K + P +L+ +
Sbjct: 327 DEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMK 386
Query: 522 KED 524
ED
Sbjct: 387 CED 389
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 2e-05
Identities = 30/209 (14%), Positives = 76/209 (36%), Gaps = 25/209 (11%)
Query: 239 REGRVDDALFLLDEM-KNNAFSVDIVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGVAPDD 297
G A+ LD++ + + + L + +CF K G+ A A + D+
Sbjct: 155 GSGDYTAAIAFLDKILEVCVWDAE--LRELRAECFIKEGEPRKAISDL--KAASKLKNDN 210
Query: 298 VTYTSMIG-VLCKSKRLEEAVAMFEQ---MDRN--------REVPCAYAYNTMIMGYGSV 345
I + + E +++ + +D++ ++V
Sbjct: 211 TEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRD 270
Query: 346 GKFDEAFSLFER---LKQKGCIPSVIAYNSLLTCLGKKGRVTEAMKIF-EAMKKDARPNN 401
G++ +A S +E + +V + + C K + EA+++ E ++ + P+N
Sbjct: 271 GRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME--PDN 328
Query: 402 T-TYNVLIDMLCKAGNFEDALK-FRDAMK 428
+ +++A++ + A +
Sbjct: 329 VNALKDRAEAYLIEEMYDEAIQDYETAQE 357
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 1e-04
Identities = 39/259 (15%), Positives = 81/259 (31%), Gaps = 51/259 (19%)
Query: 295 PDDV-TYTSMIGVLCKSKRLEEAVAMFEQ--------------MDRNREVPCAYAYNTMI 339
D +L K +L+EA F++ + + +
Sbjct: 91 MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQA 150
Query: 340 MGYGSVGKFDEAFSLFER-LKQKGCIPSVIAYNSLLTCLGKKGRVTEAMKIFE-AMKKDA 397
+ G + A + ++ L+ C K+G +A+ + A K
Sbjct: 151 LNAFGSGDYTAAIAFLDKILEVCVW--DAELRELRAECFIKEGEPRKAISDLKAASKLK- 207
Query: 398 RPNNTT-YNVLIDMLCKAGNFEDALK-FRDAMKEAGLFPNVMTVNIMVDRLCKAQKLDEA 455
+NT + + + + G+ E +L R+ +K L + ++ K KL E+
Sbjct: 208 -NDNTEAFYKISTLYYQLGDHELSLSEVRECLK---LDQDHKRCFAHYKQVKKLNKLIES 263
Query: 456 FSIFEGMDHKTCTPDAVTFCSLIDGLGKNGRVDDAYKFYEKMLDTD---QIPNAILYTSL 512
+ L ++GR DA YE ++ T+ +
Sbjct: 264 ----------------------AEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERI 301
Query: 513 IRNFFKHGRKEDGHKIYKE 531
F K + + ++ E
Sbjct: 302 CHCFSKDEKPVEAIRVCSE 320
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383 | Back alignment and structure |
|---|
Score = 46.7 bits (111), Expect = 2e-05
Identities = 20/209 (9%), Positives = 66/209 (31%), Gaps = 23/209 (11%)
Query: 313 LEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLFER----LKQKGCIPSV- 367
+A ++++ + + ++ + + ++++A S F++ + + +
Sbjct: 166 ARQAYEIYKEHE-AYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMG 224
Query: 368 IAYNSLLTCLGKKGRVTEAMKIFE-----AMKKDARPNN-TTYNVLIDMLCKAGNFEDAL 421
++ C + + +A+ F+ + + P+ Y ++ + K G + A
Sbjct: 225 RTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAH 284
Query: 422 K-FRDAMKEAGLFPN------VMTVNIMVDRLCKAQKLDEAFSIFEGMDHKTCTPDAVTF 474
+ M + + + + + + F E D F
Sbjct: 285 EYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLY---ADLEDF 341
Query: 475 CSLI-DGLGKNGRVDDAYKFYEKMLDTDQ 502
+ + A ++ K+ Q
Sbjct: 342 AIDVAKYYHERKNFQKASAYFLKVEQVRQ 370
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Length = 530 | Back alignment and structure |
|---|
Score = 46.0 bits (108), Expect = 4e-05
Identities = 20/132 (15%), Positives = 47/132 (35%), Gaps = 3/132 (2%)
Query: 451 KLDEAFSIFEGMDHKTCTPDAVTFCSLIDGLGKNGRVDDAYKFYEKMLDTDQIPNAILYT 510
K ++ SI+ + + + + + + ++K + D +Y
Sbjct: 336 KYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE-DARTRHHVYV 394
Query: 511 SLIRNFFKHGR-KEDGHKIYKEMVQRGCSPDLMLLNTYMDCVFKAGETEKGRALFEEIKA 569
+ + + K KI++ +++ + Y+D + E R LFE +
Sbjct: 395 TAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLT 453
Query: 570 QGFVPDVQSYSI 581
G +P +S I
Sbjct: 454 SGSLPPEKSGEI 465
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Length = 530 | Back alignment and structure |
|---|
Score = 42.5 bits (99), Expect = 5e-04
Identities = 31/195 (15%), Positives = 68/195 (34%), Gaps = 9/195 (4%)
Query: 346 GKFDEAFSLFERLKQKGCIPSVIAYNSLLTCLGKKGRVTEAMKIFEAMKKDARPNNT-TY 404
DEA +++ER +++ Y + + + + I+ + + T Y
Sbjct: 300 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVY 359
Query: 405 NVLIDMLCKAGNFEDALK-FRDAMKEAGLFPNVMTVNIMVDRLCKAQKLDEAFSIFEGMD 463
+ +A + F+ A ++A +V +++ C + AF IFE
Sbjct: 360 IQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCS-KDKSVAFKIFELG- 417
Query: 464 HKTCTPDAVTFCSLIDGLGKNGRVDDAYKFYEKMLDTDQIP---NAILYTSLIRNF-FKH 519
K + ID L ++ +E++L + +P + ++ + F
Sbjct: 418 LKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLA-FESNI 476
Query: 520 GRKEDGHKIYKEMVQ 534
G K+ K
Sbjct: 477 GDLASILKVEKRRFT 491
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 6e-05
Identities = 15/84 (17%), Positives = 26/84 (30%), Gaps = 12/84 (14%)
Query: 313 LEEAVAMFEQM---DRNREVPCAYAYNTMIMGYGSVGKFDEAFSLFER-LKQKGCIPS-V 367
++ E M + T+ Y +FD A L P+
Sbjct: 1 MQAITERLEAMLAQGTD----NMLLRFTLGKTYAEHEQFDAALPHLRAALDFD---PTYS 53
Query: 368 IAYNSLLTCLGKKGRVTEAMKIFE 391
+A+ L L +G A + +E
Sbjct: 54 VAWKWLGKTLQGQGDRAGARQAWE 77
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308 | Back alignment and structure |
|---|
Score = 45.0 bits (106), Expect = 6e-05
Identities = 32/195 (16%), Positives = 63/195 (32%), Gaps = 7/195 (3%)
Query: 309 KSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLFERLKQKGCIPSVI 368
+EA ++E+ Y S K+++ S++ RL I +
Sbjct: 76 AKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTL 135
Query: 369 AYNSLLTCLGKKGRVTEAMKIFEAMKKDARPNNTTYNVLIDMLCKA-GNFEDALK-FRDA 426
Y + + + IF+ ++DAR + Y M + A K F
Sbjct: 136 VYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELG 195
Query: 427 MKEAGLFPNVMTVNIMVDRLCKAQKLDEAFSIFEGMDHKTCTPDAVT---FCSLIDGLGK 483
+K+ G P V +D L + + +FE + P + + +
Sbjct: 196 LKKYGDIPEY--VLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESN 253
Query: 484 NGRVDDAYKFYEKML 498
G + K ++
Sbjct: 254 IGDLASILKVEKRRF 268
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308 | Back alignment and structure |
|---|
Score = 42.7 bits (100), Expect = 3e-04
Identities = 19/134 (14%), Positives = 49/134 (36%), Gaps = 1/134 (0%)
Query: 448 KAQKLDEAFSIFEGMDHKTCTPDAVTFCSLIDGLGKNGRVDDAYKFYEKMLDTDQIPNAI 507
K ++ SI+ + + + + + + ++K + + + +
Sbjct: 111 SRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHV 170
Query: 508 LYTSLIRNFFKHGRKEDGHKIYKEMVQRGCSPDLMLLNTYMDCVFKAGETEKGRALFEEI 567
T+ + ++ K KI++ +++ + Y+D + E R LFE +
Sbjct: 171 YVTAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERV 229
Query: 568 KAQGFVPDVQSYSI 581
G +P +S I
Sbjct: 230 LTSGSLPPEKSGEI 243
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 9e-05
Identities = 18/122 (14%), Positives = 40/122 (32%), Gaps = 13/122 (10%)
Query: 313 LEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLFER----LKQKGCIPSV- 367
+E + + + A + + + +G+F++A ++R + G
Sbjct: 246 HQERLRIAREFGDRAAE--RRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEA 303
Query: 368 IAYNSLLTCLGKKGRVTEAMKIFE---AMKKD--ARPNN-TTYNVLIDMLCKAGNFEDAL 421
+ SL A++ A+ ++ R L + G E AL
Sbjct: 304 QSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERAL 363
Query: 422 KF 423
K+
Sbjct: 364 KY 365
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 9e-05
Identities = 14/132 (10%), Positives = 38/132 (28%), Gaps = 11/132 (8%)
Query: 295 PDDVTYTSMIGVLCKSKRLEEAVAMFEQ-MDRNREVPCAYAYNTMIMGYGSVGKFDEAFS 353
D + + E A++ +++ RE Y + + +G
Sbjct: 36 KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGRE--MRADYKVISKSFARIGNAYHKLG 93
Query: 354 LFER-LKQKGCIPSVIAYNSLLTCLGKKGRVTEAMKIFE-AMKKDARPNNT-TYNVLIDM 410
++ ++ + + L K + +K E + P +
Sbjct: 94 DLKKTIEYY---QKSLTEHRTADILTKLRNAEKELKKAEAEAYVN--PEKAEEARLEGKE 148
Query: 411 LCKAGNFEDALK 422
++ +A+K
Sbjct: 149 YFTKSDWPNAVK 160
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 43.7 bits (104), Expect = 1e-04
Identities = 22/135 (16%), Positives = 47/135 (34%), Gaps = 16/135 (11%)
Query: 306 VLCKSKRLEEAVAMFEQ---MDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLFERLKQKG 362
K+++ +EA+ + + + ++ N G+++ A S ++G
Sbjct: 14 KFYKARQFDEAIEHYNKAWELHKD-----ITYLNNRAAAEYEKGEYETAISTLNDAVEQG 68
Query: 363 CIPS-VIAYNSLLTCLGKKGRVTEAMKIFE-AMKKDARPNNTTYNVLIDMLCKAGNFEDA 420
Y + + G + + ++ + T + D+L K N E
Sbjct: 69 --REMRADYKVISKSFARIGNAYHKLGDLKKTIEYY--QKSLTEHRTADILTKLRNAEKE 124
Query: 421 LKFRDAMKEAGLFPN 435
LK A EA + P
Sbjct: 125 LK--KAEAEAYVNPE 137
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 1e-04
Identities = 19/142 (13%), Positives = 46/142 (32%), Gaps = 17/142 (11%)
Query: 289 KAQGVAPDDVTYTSMIGV-LCKSKRLEEAVAMFEQ-MDRNREVPCAYAYNTMIMGYGSVG 346
+G++ D + +G ++ + ++A +F+ + A + + S+G
Sbjct: 9 MLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHY--DARYFLGLGACRQSLG 66
Query: 347 KFDEAFSLFER---LKQKGCIPSVIAYNSLLTCLGKKGRVTEAMKIFE-AMKKDARPNNT 402
+++A + + C + G + A F A
Sbjct: 67 LYEQALQSYSYGALMDIN----EPRFPFHAAECHLQLGDLDGAESGFYSARALA--AAQP 120
Query: 403 TYNVLIDMLCKAGNFEDALKFR 424
+ L +AG +A+ R
Sbjct: 121 AHEALAA---RAGAMLEAVTAR 139
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 2e-04
Identities = 28/161 (17%), Positives = 50/161 (31%), Gaps = 21/161 (13%)
Query: 271 CFGKVGKVDMAWKFFHEMKAQGVAPDDV-TYTSMIGVLCKSKRLEEAVAMFEQ---MDRN 326
V +++ A F+ KA + Y V + +EA MFE+
Sbjct: 66 LLSSVNELERALAFYD--KALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGME 123
Query: 327 REVPCAYAYNTMIMGYGSVGKFDEAFSLFER---LKQKGCIPSVIAYNSLLTCLGKKGRV 383
+ + + + A +R L + A CL +G +
Sbjct: 124 ----NGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN----DTEARFQFGMCLANEGML 175
Query: 384 TEAMKIFE-AMKKDARPNNT-TYNVLIDMLCKAGNFEDALK 422
EA+ F ++D P + + N E AL+
Sbjct: 176 DEALSQFAAVTEQD--PGHADAFYNAGVTYAYKENREKALE 214
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 44.0 bits (103), Expect = 2e-04
Identities = 33/173 (19%), Positives = 72/173 (41%), Gaps = 15/173 (8%)
Query: 292 GVAPDDV-TYTSMIGVLCKSKRLEEAVAMFEQ-MDRNREVPCAYAYNTMIMGYGSVGKFD 349
G P + ++ + + +EEAV ++ + ++ E A A++ + GK
Sbjct: 3 GSCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPE--FAAAHSNLASVLQQQGKLQ 60
Query: 350 EAFSLFER-LKQKGCIPSVIAYNSLLTCLGKKGRVTEAMKIFE-AMKKDARPNNT-TYNV 406
EA ++ ++ AY+++ L + V A++ + A++ + P ++
Sbjct: 61 EALMHYKEAIRISPT--FADAYSNMGNTLKEMQDVQGALQCYTRAIQIN--PAFADAHSN 116
Query: 407 LIDMLCKAGNFEDALK-FRDAMKEAGLFPNVMTVNIMV--DRLCKAQKLDEAF 456
L + +GN +A+ +R A+K FP+ N+ +C DE
Sbjct: 117 LASIHKDSGNIPEAIASYRTALKLKPDFPDAY-CNLAHCLQIVCDWTDYDERM 168
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 2e-04
Identities = 24/177 (13%), Positives = 60/177 (33%), Gaps = 30/177 (16%)
Query: 306 VLCKSKRLEEAVAMFEQ----------------MDRNREVPCAYAYNTMIMGYGSVGKFD 349
++ + +AV+ F Q +D+N E+ A + + Y +D
Sbjct: 13 AAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATE-LALAYKKNRNYD 71
Query: 350 EAFSLFERLKQKGCIP-SVIAYNSLLTCLGKKGRVTEAMKIFE-AMKKDARPNNT-TYNV 406
+A+ ++ L QK P +V + +G+ +A++++E ++ + +N
Sbjct: 72 KAYLFYKELLQK--APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE--ADNLAANIF 127
Query: 407 LIDMLCKAGNFED-ALK-FRDAMKEAGLFP-NVMTVNIMVDRLCKAQKLDEAFSIFE 460
L + E L+ + + ++A + +
Sbjct: 128 LGNYYYLTAEQEKKKLETDYKKLS---SPTKMQYARYRDGLSKLFTTRYEKARNSLQ 181
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 40.9 bits (96), Expect = 7e-04
Identities = 21/169 (12%), Positives = 55/169 (32%), Gaps = 22/169 (13%)
Query: 214 LFHQMQELGYEVSVHLFTTLIRVFAREGRVDDALFLLD---EMKNNAFSVDIVLYNVCID 270
+ + E+S L T L + + D A + N ++ C +
Sbjct: 41 YYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPN----NVDCLEACAE 96
Query: 271 CFGKVGKVDMAWKFFHEMKAQGVAPDDVTYTSMIGVLC--KSKRLEEAVAMFEQ---MDR 325
G+ A + + K + D++ +G +++ ++ + +
Sbjct: 97 MQVCRGQEKDALRMYE--KILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPT 154
Query: 326 NREVPCAYAYNTMIMGYGSVGKFDEAFSLFER-LKQKGCIPSVIAYNSL 373
YA + ++++A + ++ + + PS A +L
Sbjct: 155 K----MQYARYRDGLSKLFTTRYEKARNSLQKVILRF---PSTEAQKTL 196
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372 | Back alignment and structure |
|---|
Score = 42.8 bits (100), Expect = 4e-04
Identities = 18/117 (15%), Positives = 37/117 (31%), Gaps = 9/117 (7%)
Query: 310 SKRLEEAVAMFEQMDRNREVP-CAYAYNTMIMGYGSVGKFDEAFSLFER-LKQKGCIPSV 367
K+L + + E+ + Y + GK DE++ + + S
Sbjct: 254 EKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE---MSW 310
Query: 368 IAYNSLLTCLGKKGRVTEAMKIFE-AMKKDARPNNTTYNVLIDMLCKAGNFEDALKF 423
+ Y L KG EA + A P T + + + + + + +
Sbjct: 311 LNYVLLGKVYEMKGMNREAADAYLTAFNLR--PGANTLYWIENGIFQT-SVPYVVPY 364
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 39.3 bits (92), Expect = 7e-04
Identities = 12/82 (14%), Positives = 26/82 (31%), Gaps = 2/82 (2%)
Query: 343 GSVGKFDEAFSLFER-LKQKGCIPSVI-AYNSLLTCLGKKGRVTEAMKIFEAMKKDARPN 400
G +G +A +E+ + + Y L + G +A + K +
Sbjct: 1 GVLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNH 60
Query: 401 NTTYNVLIDMLCKAGNFEDALK 422
+L G +E ++
Sbjct: 61 QALRVFYAMVLYNLGRYEQGVE 82
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 39.3 bits (92), Expect = 7e-04
Identities = 12/83 (14%), Positives = 32/83 (38%), Gaps = 5/83 (6%)
Query: 312 RLEEAVAMFEQ-MDRNREVP-CAYAYNTMIMGYGSVGKFDEAFSLFER-LKQKGCIPSVI 368
+AV +E+ + + A Y + + ++G++ +A ++ +KQ +
Sbjct: 5 LEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQA-- 62
Query: 369 AYNSLLTCLGKKGRVTEAMKIFE 391
L GR + +++
Sbjct: 63 LRVFYAMVLYNLGRYEQGVELLL 85
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 7e-04
Identities = 41/226 (18%), Positives = 68/226 (30%), Gaps = 20/226 (8%)
Query: 299 TYTSMIGVLCKSKRLEEAVAMFEQ---MDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLF 355
T + + + +A A E D A+ Y + D+A F
Sbjct: 10 IKTQLAMEYMRGQDYRQATASIEDALKSDPK----NELAWLVRAEIYQYLKVNDKAQESF 65
Query: 356 ER-LKQKGCIP-SVIAYNSLLTCL-GKKGRVTEAMKIFE-AMKKDARPNNT-TYNVLIDM 410
+ L K P S N+ L G+ R E+M F+ A+ P
Sbjct: 66 RQALSIK---PDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGIC 122
Query: 411 LCKAGNFEDALK-FRDAMKEAGLFPNVMTVNIMVDRLCKAQKLDEAFSIFEGMDHKTCTP 469
K G F A + ++ FP + A +L +A F+ +
Sbjct: 123 SAKQGQFGLAEAYLKRSLAAQPQFPPAF--KELARTKMLAGQLGDADYYFKKYQSRVEVL 180
Query: 470 DAVTFCSLIDGLGKNGRVDDAYKFYEKMLDTDQIPNAILYTSLIRN 515
A G AY+ YE L + P + +++
Sbjct: 181 QADDLLLGWKIAKALGNAQAAYE-YEAQLQAN-FPYSEELQTVLTG 224
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 895 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 8e-11 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 9e-09 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 1e-08 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 6e-06 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 3e-05 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 4e-04 | |
| d2onda1 | 308 | a.118.8.7 (A:242-549) Cleavage stimulation factor | 5e-04 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 62.4 bits (150), Expect = 8e-11
Identities = 44/194 (22%), Positives = 86/194 (44%), Gaps = 12/194 (6%)
Query: 271 CFGKVGKVDMAWKFFHEMKAQGVAPDDV-TYTSMIGVLCKSKRLEEAVAMFEQMDRNREV 329
F G++ +A H KA + P+ + Y ++ VL +++ + AVA + +
Sbjct: 178 VFNAQGEIWLAIH--HFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALS-LSP 234
Query: 330 PCAYAYNTMIMGYGSVGKFDEAFSLFER-LKQKGCIPSVIAYNSLLTCLGKKGRVTEAMK 388
A + + Y G D A + R ++ + P AY +L L +KG V EA
Sbjct: 235 NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPD--AYCNLANALKEKGSVAEAED 292
Query: 389 IFEAMKKDARPNNTTYNVLIDMLCKAGNFEDALK-FRDAMKEAGLFPNVMTVNIMVDRLC 447
+ + + + N L ++ + GN E+A++ +R A++ +FP + + +
Sbjct: 293 CYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALE---VFPEFAAAHSNLASVL 349
Query: 448 KAQ-KLDEAFSIFE 460
+ Q KL EA ++
Sbjct: 350 QQQGKLQEALMHYK 363
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.2 bits (134), Expect = 9e-09
Identities = 35/206 (16%), Positives = 80/206 (38%), Gaps = 8/206 (3%)
Query: 331 CAYAYNTMIMGYGSVGKFDEAFSLFERLKQKGCIPSVI-AYNSLLTCLGKKGRVTEAMKI 389
A A++ + + + G+ A FE+ P+ + AY +L L + A+
Sbjct: 168 FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD--PNFLDAYINLGNVLKEARIFDRAVAA 225
Query: 390 FEAMKKDARPNNTTYNVLIDMLCKAGNFEDALK-FRDAMKEAGLFPNVMTVNIMVDRLCK 448
+ + + + L + + G + A+ +R A++ FP+ + + L +
Sbjct: 226 YLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAY--CNLANALKE 283
Query: 449 AQKLDEAFSIFEGMDHKTCTPDAVTFCSLIDGLGKNGRVDDAYKFYEKMLDTDQIPNAIL 508
+ EA + T L + + G +++A + Y K L+ A
Sbjct: 284 KGSVAEAEDCYNTALRLCPTHADSLNN-LANIKREQGNIEEAVRLYRKALEVFP-EFAAA 341
Query: 509 YTSLIRNFFKHGRKEDGHKIYKEMVQ 534
+++L + G+ ++ YKE ++
Sbjct: 342 HSNLASVLQQQGKLQEALMHYKEAIR 367
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.8 bits (133), Expect = 1e-08
Identities = 34/242 (14%), Positives = 78/242 (32%), Gaps = 13/242 (5%)
Query: 265 YNVCIDCFGKVGKVDMAWKFFHEMKAQGVAPDDVTYTSMIGV-LCKSKRLEEAVAMFE-- 321
+ +KA P+ S +G + A+ FE
Sbjct: 136 CVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKA 195
Query: 322 -QMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLFERLKQKGCIPSVIAYNSLLTCLGKK 380
+D N AY + FD A + + R + + + +L ++
Sbjct: 196 VTLDPN----FLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHA-VVHGNLACVYYEQ 250
Query: 381 GRVTEAMKIFEAMKKDARPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEAGLFPNVMTVN 440
G + A+ + + Y L + L + G+ +A + + ++N
Sbjct: 251 GLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLN 309
Query: 441 IMVDRLCKAQKLDEAFSIFEGMDHKTCTPD-AVTFCSLIDGLGKNGRVDDAYKFYEKMLD 499
+ + + ++EA ++ P+ A +L L + G++ +A Y++ +
Sbjct: 310 NLANIKREQGNIEEAVRLYR--KALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367
Query: 500 TD 501
Sbjct: 368 IS 369
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.0 bits (110), Expect = 6e-06
Identities = 53/375 (14%), Positives = 130/375 (34%), Gaps = 19/375 (5%)
Query: 309 KSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLFER-LKQKGCIPSV 367
++ E A Q+ +E + + + D + +KQ +
Sbjct: 11 QAGDFEAAERHCMQL-WRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAE- 68
Query: 368 IAYNSLLTCLGKKGRVTEAMKIFEAMKKDARPNNTTYNVLIDMLCKAGNFEDALKFRDAM 427
AY++L ++G++ EA++ + + Y L L AG+ E A++ +
Sbjct: 69 -AYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSA 127
Query: 428 KEAGLFPNVMTVNIMVDRLCKAQKLDEAFSIFEGMDHKTCTPDAVTFCSLIDGLGKNGRV 487
+ + ++ + + + ++ + AV + +L G +
Sbjct: 128 LQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPN--FAVAWSNLGCVFNAQGEI 185
Query: 488 DDAYKFYEKMLDTDQIPNAILYTSLIRNFFKHGRKEDGHKIYKEMVQRGCSPDLMLLNTY 547
A +EK + D Y +L + + Y + + ++ N
Sbjct: 186 WLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGN-L 243
Query: 548 MDCVFKAGETEKGRALFEEIKAQGFVPD-VQSYSILIHGLVKAGFAHETDQLFYAMKKQG 606
++ G + + +A P +Y L + L + G E + + +
Sbjct: 244 ACVYYEQGLIDLAIDTYR--RAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL- 300
Query: 607 CVLDTRAYNTVVDGFCKSGKVNKAYQLLEE-MKTKGHYPTVVTYGSVIDGLAKIDRLDEA 665
C + N + + + G + +A +L + ++ + + ++ L + +L EA
Sbjct: 301 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAA--HSNLASVLQQQGKLQEA 358
Query: 666 YMLFEEAKSKGIELN 680
M ++EA I ++
Sbjct: 359 LMHYKEA----IRIS 369
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.0 bits (105), Expect = 3e-05
Identities = 46/378 (12%), Positives = 112/378 (29%), Gaps = 19/378 (5%)
Query: 379 KKGRVTEAMKIFEAMKKDARPNNTTYNVLIDMLCKAGNFEDALK-FRDAMKEAGLFPNVM 437
+ G A + + + N +L + + + + A+K P +
Sbjct: 11 QAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK---QNPLLA 67
Query: 438 TVNIMVDRLCKAQKLDEAFSIFEGMDHKTCTPDAVTFCSLIDGLGKNGRVDDAYKFYEKM 497
L K I+ D +
Sbjct: 68 EAYS---NLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAY 124
Query: 498 LDTDQIPNAILYTSLIRNFFKHGRKEDGHKIYKEMVQRGCSPDLMLLNTYMDCVFKAGET 557
+ Q + + P+ + + + CVF A
Sbjct: 125 VSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGE 184
Query: 558 EKGRALFEEIKAQGFVPD-VQSYSILIHGLVKAGFAHETDQLFYAMKKQGCVLDTRAYNT 616
A+ KA P+ + +Y L + L +A + +
Sbjct: 185 IW-LAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HAVVHGN 242
Query: 617 VVDGFCKSGKVNKAYQLLEE-MKTKGHYPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSK 675
+ + + G ++ A ++ + H+P Y ++ + L + + EA + A +
Sbjct: 243 LACVYYEQGLIDLAIDTYRRAIELQPHFPDA--YCNLANALKEKGSVAEAEDCYNTA-LR 299
Query: 676 GIELNTVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTP-NAYTWNCLLDALVKAEEISE 734
+ ++L + + G I+EA + + ++ + P A + L L + ++ E
Sbjct: 300 LCPTHADSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQE 357
Query: 735 AFVCFQSMKDLKCTPNHV 752
A + ++ + ++ +P
Sbjct: 358 ALMHYK--EAIRISPTFA 373
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 40.8 bits (95), Expect = 4e-04
Identities = 20/124 (16%), Positives = 47/124 (37%), Gaps = 7/124 (5%)
Query: 379 KKGRVTEAMKIFE-AMKKDARPNNTT-YNVLIDMLCKAGNFEDALKFRDAMKEAGLFPNV 436
+G++ +A+++ A+K P + + + I++LC G+FE A + M+ LFP
Sbjct: 8 SEGQLQQALELLIEAIKAS--PKDASLRSSFIELLCIDGDFERADE--QLMQSIKLFPEY 63
Query: 437 MTVNIMVDRLCKA-QKLDEAFSIFEGMDHKTCTPDAVTFCSLIDGLGKNGRVDDAYKFYE 495
+ + L KA Q + + + + + +
Sbjct: 64 LPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELAL 123
Query: 496 KMLD 499
++ +
Sbjct: 124 QIEE 127
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 308 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 40.7 bits (94), Expect = 5e-04
Identities = 26/222 (11%), Positives = 61/222 (27%), Gaps = 14/222 (6%)
Query: 318 AMFEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLFERLKQKGCIPSVIAYNSLLTCL 377
A + + N + DEA +++ER +++ Y +
Sbjct: 57 AQYLEQSSKLLAEKGDMNN-------AKLFSDEAANIYERAISTLLKKNMLLYFAYADYE 109
Query: 378 GKKGRVTEAMKIFEAMKKDARPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEA-GLFPNV 436
+ + + I+ + + T + + E R K+A
Sbjct: 110 ESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFAR--RAEGIKSGRMIFKKAREDARTR 167
Query: 437 MTVNIMVDRLCKAQKLD-EAFSIFEGMDHKTCTPDAVTFCSLIDGLGKNGRVDDAYKFYE 495
V + + D + K + ID L ++ +E
Sbjct: 168 HHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFE 227
Query: 496 KMLDTDQIP---NAILYTSLIRNFFKHGRKEDGHKIYKEMVQ 534
++L + +P + ++ + G K+ K
Sbjct: 228 RVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 895 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 100.0 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 100.0 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.81 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.58 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.57 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.55 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.49 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.49 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.46 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.01 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.85 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.84 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.81 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.78 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.78 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.74 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.73 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.72 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.72 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.53 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.39 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.39 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.33 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.26 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.2 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 98.12 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.11 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.8 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.77 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.6 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.55 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.26 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 97.15 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 95.15 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 94.55 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 93.46 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.8e-26 Score=177.97 Aligned_cols=248 Identities=14% Similarity=0.073 Sum_probs=151.5
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCC
Q ss_conf 99999980599689999999998879897887699999999803999899999999998699868877999999998159
Q 002664 616 TVVDGFCKSGKVNKAYQLLEEMKTKGHYPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNTVIYSSLIDGFGKVG 695 (895)
Q Consensus 616 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 695 (895)
.........+....+...+........ .....+..+...+...+++++|...++++.... +.+...+..++..+...|
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~ 217 (388)
T d1w3ba_ 140 DLGNLLKALGRLEEAKACYLKAIETQP-NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEAR 217 (388)
T ss_dssp HHHHHHHTTSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCC-CHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHCCC
T ss_conf 222222110001356788887402586-106899863630102471999999999999849-464999999715522005
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf 99899999999997999978999999999999619989999999998866999998999999999980299758999999
Q 002664 696 RIDEAYLIMEELMQKGLTPNAYTWNCLLDALVKAEEISEAFVCFQSMKDLKCTPNHVTYSIIINGLCRVRKFNKAFVFWQ 775 (895)
Q Consensus 696 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~ 775 (895)
++++|+..++...... +.+...+..++..+...|++++|+..++++.+.. +.+...+..++.++...|++++|...++
T Consensus 218 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~ 295 (388)
T d1w3ba_ 218 IFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYN 295 (388)
T ss_dssp CTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 2999999999857775-5479999999999998789999999999999849-9989999999999997487999999998
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 99887999999999999999996299989999999999779999-98889999999972099889999999998779977
Q 002664 776 EMQKQGFKPNTITYTTMISGLAKAGNITEANGLFERFKENGGVP-DSACYNAMMEGLSNANRAMDAYTLFEETRRKGFNI 854 (895)
Q Consensus 776 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 854 (895)
..... .+.+...+..++..+...|++++|++.++++++ ..| +...+..++.++...|++++|+..++++++.. |.
T Consensus 296 ~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~-P~ 371 (388)
T d1w3ba_ 296 TALRL-CPTHADSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PT 371 (388)
T ss_dssp HHHHH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTT--SCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC-TT
T ss_pred HHHCC-CCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CC
T ss_conf 65404-873001015799999987899999999999998--688989999999999998599999999999999709-99
Q ss_pred CHHHHHHHHHHHHHCCC
Q ss_conf 97669999999992199
Q 002664 855 HTKTCVILLDALHKAEC 871 (895)
Q Consensus 855 ~~~~~~~l~~~~~~~g~ 871 (895)
+..++..|+.+|.+.|+
T Consensus 372 ~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 372 FADAYSNMGNTLKEMQD 388 (388)
T ss_dssp CHHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHHCCC
T ss_conf 89999999999998589
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.9e-26 Score=175.90 Aligned_cols=218 Identities=17% Similarity=0.154 Sum_probs=105.6
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 77599999999805996899999999988798978876999999998039998999999999986998688779999999
Q 002664 611 TRAYNTVVDGFCKSGKVNKAYQLLEEMKTKGHYPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNTVIYSSLIDG 690 (895)
Q Consensus 611 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 690 (895)
...+..+...+...|+++.|...+++..+..+. +...+..+...+...+++++|...++.....+ +.....+..++..
T Consensus 169 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 246 (388)
T d1w3ba_ 169 AVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACV 246 (388)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_conf 689986363010247199999999999984946-49999997155220052999999999857775-5479999999999
Q ss_pred HHCCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHH
Q ss_conf 981599989999999999799997-8999999999999619989999999998866999998999999999980299758
Q 002664 691 FGKVGRIDEAYLIMEELMQKGLTP-NAYTWNCLLDALVKAEEISEAFVCFQSMKDLKCTPNHVTYSIIINGLCRVRKFNK 769 (895)
Q Consensus 691 ~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 769 (895)
+...|++++|+..++++++. .| +...+..++..+...|++++|...++...... +.+...+..++.++...|++++
T Consensus 247 ~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 323 (388)
T d1w3ba_ 247 YYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEE 323 (388)
T ss_dssp HHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHH
T ss_pred HHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCC-CCCCHHHHHHHHHHHHCCCHHH
T ss_conf 99878999999999999984--99989999999999997487999999998654048-7300101579999998789999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHCCC
Q ss_conf 99999999887999999999999999996299989999999999779999-98889999999972099
Q 002664 770 AFVFWQEMQKQGFKPNTITYTTMISGLAKAGNITEANGLFERFKENGGVP-DSACYNAMMEGLSNANR 836 (895)
Q Consensus 770 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~ 836 (895)
|+..++++.+. .+.+..++..++.++...|++++|...++++++ ..| ++..+..++.+|.+.||
T Consensus 324 A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 324 AVRLYRKALEV-FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHTTS-CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHH-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCC
T ss_conf 99999999986-889899999999999985999999999999997--099989999999999998589
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.81 E-value=2.4e-16 Score=114.25 Aligned_cols=249 Identities=12% Similarity=-0.010 Sum_probs=0.0
Q ss_pred HCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCC-CHH
Q ss_conf 8798978876999999998039998999999999986998688779999999981599989999999999799997-899
Q 002664 639 TKGHYPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNTVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTP-NAY 717 (895)
Q Consensus 639 ~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~ 717 (895)
+.+...+.......+..+.+.|++++|...|+++++.. |.+...|..++.++...|++++|+..+.++++ +.| +..
T Consensus 12 ~~n~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~~ 88 (323)
T d1fcha_ 12 EENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLE--LKPDNQT 88 (323)
T ss_dssp SSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHH
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHC--CCCCCCC
T ss_conf 05998653999999999998599999999999999868-99899999999999983775889999985100--2222222
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC--------------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC-CC
Q ss_conf 9999999999619989999999998866999--------------99899999999998029975899999999887-99
Q 002664 718 TWNCLLDALVKAEEISEAFVCFQSMKDLKCT--------------PNHVTYSIIINGLCRVRKFNKAFVFWQEMQKQ-GF 782 (895)
Q Consensus 718 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--------------p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~ 782 (895)
.+..++..+...|++++|...++++...... .+..........+...+.+.+|.+.+.++.+. ..
T Consensus 89 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~ 168 (323)
T d1fcha_ 89 ALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPT 168 (323)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 22222222222221121110002677736106788876640000000100001478888765799999999999997130
Q ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf 9999999999999996299989999999999779999-988899999999720998899999999987799779766999
Q 002664 783 KPNTITYTTMISGLAKAGNITEANGLFERFKENGGVP-DSACYNAMMEGLSNANRAMDAYTLFEETRRKGFNIHTKTCVI 861 (895)
Q Consensus 783 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 861 (895)
..+..++..++..+...|++++|...+++++. ..| +...|..++..+...|++++|+..++++++.. |.+..++..
T Consensus 169 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~ 245 (323)
T d1fcha_ 169 SIDPDVQCGLGVLFNLSGEYDKAVDCFTAALS--VRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYN 245 (323)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCC--CCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHH-HCCHHHHHH
T ss_conf 12221110368888888877550021112222--222221110133301221111013788877899884-324999999
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999921998899999999999998666320
Q 002664 862 LLDALHKAECLEQAAIVGAVLRETAKSQHAAR 893 (895)
Q Consensus 862 l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~~~ 893 (895)
++.+|...|++++|...+++.++..++.....
T Consensus 246 lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~ 277 (323)
T d1fcha_ 246 LGISCINLGAHREAVEHFLEALNMQRKSRGPR 277 (323)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHH
T ss_conf 99999987899999999999997097570011
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=5.4e-12 Score=86.78 Aligned_cols=254 Identities=9% Similarity=0.086 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 987999999999439946899999998758988786869999999994399-4469999999987999999999999999
Q 002664 227 VHLFTTLIRVFAREGRVDDALFLLDEMKNNAFSVDIVLYNVCIDCFGKVGK-VDMAWKFFHEMKAQGVAPDDVTYTSMIG 305 (895)
Q Consensus 227 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~g~~p~~~~~~~l~~ 305 (895)
..++..+..++.+.+.+++|+.+++++.+.+ +.+...|+..+.++...|+ +++|...++...+.... +..+|..++.
T Consensus 43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~-~~~a~~~~~~ 120 (315)
T d2h6fa1 43 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRV 120 (315)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHH
T ss_conf 9999999999995886699999999999879-8876999999999998376799999999999988774-2268988758
Q ss_pred HHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCC---
Q ss_conf 99934997599999999853999978876999999997059998999999999866999788779999999993399---
Q 002664 306 VLCKSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLFERLKQKGCIPSVIAYNSLLTCLGKKGR--- 382 (895)
Q Consensus 306 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--- 382 (895)
.+.+.|++++|+..++++.+..+. +..+|..++..+...|++++|...++++++.++. +..+|..+..++.+.+.
T Consensus 121 ~~~~l~~~~eAl~~~~kal~~dp~-n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~-n~~a~~~r~~~l~~~~~~~~ 198 (315)
T d2h6fa1 121 LVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYND 198 (315)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCCCH
T ss_conf 888505378899887555432100-4688998877888888667899999999987974-49999889999987456310
Q ss_pred ---HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHC---------C
Q ss_conf ---7899999999743999887789999999994499889999999998879897853399999999964---------9
Q 002664 383 ---VTEAMKIFEAMKKDARPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEAGLFPNVMTVNIMVDRLCKA---------Q 450 (895)
Q Consensus 383 ---~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------g 450 (895)
+++|+..+..+....|.+..+|..+...+...+.-+....+-.-..-.....+...+..++..+... .
T Consensus 199 ~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~ 278 (315)
T d2h6fa1 199 RAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKED 278 (315)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHHHH
T ss_conf 23547767999999984988569999987798862718899999999972877578999999999999998358787999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHC
Q ss_conf 9648999999823379998863399999998406
Q 002664 451 KLDEAFSIFEGMDHKTCTPDAVTFCSLIDGLGKN 484 (895)
Q Consensus 451 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 484 (895)
.+++|..++......--+....-|..+...+...
T Consensus 279 ~~~ka~~l~~~l~~~~DpiR~~yw~~~~~~l~~~ 312 (315)
T d2h6fa1 279 ILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 312 (315)
T ss_dssp HHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_conf 9999999999987714988999999999999876
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.57 E-value=1.3e-10 Score=78.12 Aligned_cols=278 Identities=10% Similarity=-0.017 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCC-----H
Q ss_conf 77599999999805996899999999988798978----87699999999803999899999999998699868-----8
Q 002664 611 TRAYNTVVDGFCKSGKVNKAYQLLEEMKTKGHYPT----VVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELN-----T 681 (895)
Q Consensus 611 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~ 681 (895)
..........+...|++++|+.++++........+ ...+..+...+...|++++|...++++........ .
T Consensus 12 ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 91 (366)
T d1hz4a_ 12 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYAL 91 (366)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHH
T ss_conf 99999999999988899999999999985486899679999999999999987999999999999999987501148999
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCH---
Q ss_conf 7799999999815999899999999997-------999978999999999999619989999999998866999998---
Q 002664 682 VIYSSLIDGFGKVGRIDEAYLIMEELMQ-------KGLTPNAYTWNCLLDALVKAEEISEAFVCFQSMKDLKCTPNH--- 751 (895)
Q Consensus 682 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--- 751 (895)
..+..+...+...|++..+...+..... .........+..++..+...|+++.+...+............
T Consensus 92 ~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 171 (366)
T d1hz4a_ 92 WSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQ 171 (366)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99988878878888899999889999998675034125678889988878999814566668999998887663002468
Q ss_pred -HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC---CH
Q ss_conf -9999999999802997589999999988799999------9999999999996299989999999999779999---98
Q 002664 752 -VTYSIIINGLCRVRKFNKAFVFWQEMQKQGFKPN------TITYTTMISGLAKAGNITEANGLFERFKENGGVP---DS 821 (895)
Q Consensus 752 -~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p---~~ 821 (895)
..+......+...+.+.++...+.+......... ...+..+...+...|+.++|...+++........ ..
T Consensus 172 ~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 251 (366)
T d1hz4a_ 172 LQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQ 251 (366)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHH
T ss_conf 99998888888764667888899999999998731157269999999999998604489899999999976224666777
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH-----CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf 8899999999720998899999999987-----799779766999999999219988999999999999986
Q 002664 822 ACYNAMMEGLSNANRAMDAYTLFEETRR-----KGFNIHTKTCVILLDALHKAECLEQAAIVGAVLRETAKS 888 (895)
Q Consensus 822 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 888 (895)
..+..++..+...|++++|...+++++. ...+.....+..++.+|...|++++|...+++..+...+
T Consensus 252 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~ 323 (366)
T d1hz4a_ 252 GQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANR 323 (366)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf 889999999987587999999999999887642667479999999999999878999999999999997653
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.55 E-value=2.6e-11 Score=82.47 Aligned_cols=24 Identities=4% Similarity=0.206 Sum_probs=7.8
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 999999993499759999999985
Q 002664 301 TSMIGVLCKSKRLEEAVAMFEQMD 324 (895)
Q Consensus 301 ~~l~~~~~~~g~~~~A~~~~~~~~ 324 (895)
...+....+.|+++.|..+|+++.
T Consensus 138 ~~~~~~~~~~~~~~~ar~i~~~al 161 (308)
T d2onda1 138 IQYMKFARRAEGIKSGRMIFKKAR 161 (308)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 999999998278688999999999
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.49 E-value=1.5e-12 Score=90.29 Aligned_cols=291 Identities=6% Similarity=-0.057 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCC----------HHHHHHHHHHHHHCCCCCC
Q ss_conf 686999999999439944699999999879999999999999999993499----------7599999999853999978
Q 002664 262 IVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGVAPDDVTYTSMIGVLCKSKR----------LEEAVAMFEQMDRNREVPC 331 (895)
Q Consensus 262 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~ 331 (895)
......+..........++|..+++......+. +...|+.....+...+. +++|+.+++......+. +
T Consensus 29 ~~~~~~~~~~~~~~~~~~~al~~~~~~l~~~P~-~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk-~ 106 (334)
T d1dcea1 29 QSATQAVFQKRQAGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-S 106 (334)
T ss_dssp HHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-C
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCC-C
T ss_conf 999999999986565669999999999998878-58999999999999765003477877899999999999986888-6
Q ss_pred HHHHHHHHHHHHCCCC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 8769999999970599--98999999999866999788779999999993399789999999974399988778999999
Q 002664 332 AYAYNTMIMGYGSVGK--FDEAFSLFERLKQKGCIPSVIAYNSLLTCLGKKGRVTEAMKIFEAMKKDARPNNTTYNVLID 409 (895)
Q Consensus 332 ~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 409 (895)
...|..++.++...+. +++|...+.++.+..+......+......+...+..+.|+..++.+....|.+..+|..++.
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~ 186 (334)
T d1dcea1 107 YGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSC 186 (334)
T ss_dssp HHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHH
T ss_conf 79898864899884304289999999999855921211110578999874455289999999988718987999999999
Q ss_pred HHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHH
Q ss_conf 99944998899999999988798978533999999999649964899999982337999886339999999840699889
Q 002664 410 MLCKAGNFEDALKFRDAMKEAGLFPNVMTVNIMVDRLCKAQKLDEAFSIFEGMDHKTCTPDAVTFCSLIDGLGKNGRVDD 489 (895)
Q Consensus 410 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 489 (895)
++...|++++|...+..... -..........+...+..+++...+......... +...+..++..+...++..+
T Consensus 187 ~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~-~~~~~~~l~~~~~~~~~~~~ 260 (334)
T d1dcea1 187 LLPQLHPQPDSGPQGRLPEN-----VLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAE-PLFRCELSVEKSTVLQSELE 260 (334)
T ss_dssp HHHHHSCCCCSSSCCSSCHH-----HHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCC-CSSSCCCCHHHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHHH
T ss_conf 99982688989998877677-----6899999999998824414889999988771866-05678879999999866999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 9999999985899865444999999999539977999999999884999897639999999998399159999
Q 002664 490 AYKFYEKMLDTDQIPNAILYTSLIRNFFKHGRKEDGHKIYKEMVQRGCSPDLMLLNTYMDCVFKAGETEKGRA 562 (895)
Q Consensus 490 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 562 (895)
|...+.+..+..+. +...+..++..+...|+.++|...++.+++.. |.....|..+...+...........
T Consensus 261 a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ld-P~~~~y~~~L~~~~~~e~~~~~~~~ 331 (334)
T d1dcea1 261 SCKELQELEPENKW-CLLTIILLMRALDPLLYEKETLQYFSTLKAVD-PMRAAYLDDLRSKFLLENSVLKMEY 331 (334)
T ss_dssp HHHHHHHHCTTCHH-HHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999988762913-79999999999987899999999999999879-6639999999999867659998764
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.49 E-value=7.6e-11 Score=79.57 Aligned_cols=129 Identities=11% Similarity=0.058 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-H
Q ss_conf 999999999934997599999999853999978876999999997059998999999999866999788779999999-9
Q 002664 299 TYTSMIGVLCKSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLFERLKQKGCIPSVIAYNSLLTC-L 377 (895)
Q Consensus 299 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~ 377 (895)
.|...+......|+++.|..+|++++...+......|...+....+.|+++.|..+|+++.+.+.. +...+...+.. +
T Consensus 101 l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~-~~~~~~~~a~~e~ 179 (308)
T d2onda1 101 LYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEY 179 (308)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC-CTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHH
T ss_conf 999999999861338999999999998715786999999999999827868899999999980888-6799999999998
Q ss_pred HHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 933997899999999743999887789999999994499889999999998
Q 002664 378 GKKGRVTEAMKIFEAMKKDARPNNTTYNVLIDMLCKAGNFEDALKFRDAMK 428 (895)
Q Consensus 378 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 428 (895)
...|+.+.|..+|+.+....|.+...|...+..+...|+++.|..+|++..
T Consensus 180 ~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai 230 (308)
T d2onda1 180 YCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVL 230 (308)
T ss_dssp HTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 765577899999999998610038899999999998698689999999999
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.46 E-value=1.2e-10 Score=78.34 Aligned_cols=91 Identities=18% Similarity=0.000 Sum_probs=30.0
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 99999934997599999999853999978876999999997059998999999999866999788779999999993399
Q 002664 303 MIGVLCKSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLFERLKQKGCIPSVIAYNSLLTCLGKKGR 382 (895)
Q Consensus 303 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 382 (895)
++.+|.+.|++++|+..|++.+...+. +..+|..++.+|...|++++|...|+++.+..+. +..++..++.++...|+
T Consensus 43 ~G~~y~~~g~~~~A~~~~~~al~l~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~ 120 (259)
T d1xnfa_ 43 RGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAHLNRGIALYYGGR 120 (259)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHCCCCC-CHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_conf 999999879999999999985434999-8899960042788877788752344689998761-11158889999998766
Q ss_pred HHHHHHHHHHHHC
Q ss_conf 7899999999743
Q 002664 383 VTEAMKIFEAMKK 395 (895)
Q Consensus 383 ~~~A~~~~~~~~~ 395 (895)
+++|.+.|+...+
T Consensus 121 ~~~A~~~~~~al~ 133 (259)
T d1xnfa_ 121 DKLAQDDLLAFYQ 133 (259)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
T ss_conf 7999999999986
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.01 E-value=7.4e-08 Score=60.75 Aligned_cols=223 Identities=12% Similarity=0.057 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-----CCCCCC
Q ss_conf 876999999998039998999999999986-----9986887799999999815999899999999997-----999978
Q 002664 646 VVTYGSVIDGLAKIDRLDEAYMLFEEAKSK-----GIELNTVIYSSLIDGFGKVGRIDEAYLIMEELMQ-----KGLTPN 715 (895)
Q Consensus 646 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~ 715 (895)
...|......|...+++++|...|.++.+. +.+....+|..++.+|.+.|++++|+..++...+ ......
T Consensus 37 a~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 116 (290)
T d1qqea_ 37 ADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRG 116 (290)
T ss_dssp HHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHH
T ss_conf 99999999999988699999999999999998759988999999999999998088588899999766776532532058
Q ss_pred HHHHHHHHHHHHHC-CCHHHHHHHHHHHHHCCCCCCHHH-----HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC----
Q ss_conf 99999999999961-998999999999886699999899-----99999999802997589999999988799999----
Q 002664 716 AYTWNCLLDALVKA-EEISEAFVCFQSMKDLKCTPNHVT-----YSIIINGLCRVRKFNKAFVFWQEMQKQGFKPN---- 785 (895)
Q Consensus 716 ~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~p~~~~-----~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~---- 785 (895)
..++..++..|... |++++|+..++++.+.....+... +..++..+...|++++|++.++++........
T Consensus 117 ~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~ 196 (290)
T d1qqea_ 117 ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQW 196 (290)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf 99999988867647878999988999999998733760333468899999999817399999999999986813324555
Q ss_pred --HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC------CHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHCCCCCC
Q ss_conf --9999999999996299989999999999779999------98889999999972--0998899999999987799779
Q 002664 786 --TITYTTMISGLAKAGNITEANGLFERFKENGGVP------DSACYNAMMEGLSN--ANRAMDAYTLFEETRRKGFNIH 855 (895)
Q Consensus 786 --~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p------~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~~~~ 855 (895)
...+...+.++...|+++.|...+++..+ ..| .......++.++.. .+.+++|+..|+++ .+.|
T Consensus 197 ~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~--~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~----~~lD 270 (290)
T d1qqea_ 197 SLKDYFLKKGLCQLAATDAVAAARTLQEGQS--EDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF----MRLD 270 (290)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC--C---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS----SCCC
T ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH--HCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH----HHCC
T ss_conf 6999999999999984659999999999997--597744439999999999999836899999999999887----5468
Q ss_pred HHHHHHHHHHHHHCCCHHH
Q ss_conf 7669999999992199889
Q 002664 856 TKTCVILLDALHKAECLEQ 874 (895)
Q Consensus 856 ~~~~~~l~~~~~~~g~~~~ 874 (895)
......|..+-......++
T Consensus 271 ~~~~~~L~~~k~~le~~e~ 289 (290)
T d1qqea_ 271 KWKITILNKIKESIQQQED 289 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHCCCCC
T ss_conf 9999999999986015589
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.85 E-value=5.2e-07 Score=55.39 Aligned_cols=152 Identities=10% Similarity=0.019 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 98799999999943994689999999875898878686999999999439944699999999879999999999999999
Q 002664 227 VHLFTTLIRVFAREGRVDDALFLLDEMKNNAFSVDIVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGVAPDDVTYTSMIGV 306 (895)
Q Consensus 227 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~ 306 (895)
...|+. +..+...|+++.|++.|.++. +++..+|..++.++...|++++|...|++.++.+.. ....|..++.+
T Consensus 6 ~~l~~~-g~~~~~~~d~~~Al~~~~~i~----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~-~~~a~~~~g~~ 79 (192)
T d1hh8a_ 6 ISLWNE-GVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGML 79 (192)
T ss_dssp HHHHHH-HHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHCCCHHHHHHHHHHCC----CCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_conf 999999-999998779999999998648----988999999999999858914678789999998552-34667889999
Q ss_pred HHHCCCHHHHHHHHHHHHHCCCCCCH---------------HHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf 99349975999999998539999788---------------769999999970599989999999998669997887799
Q 002664 307 LCKSKRLEEAVAMFEQMDRNREVPCA---------------YAYNTMIMGYGSVGKFDEAFSLFERLKQKGCIPSVIAYN 371 (895)
Q Consensus 307 ~~~~g~~~~A~~~~~~~~~~~~~~~~---------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 371 (895)
+.+.|++++|+..|++.......... .++..++.++...|++++|.+.+..+......+......
T Consensus 80 ~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~~~~~~~ 159 (192)
T d1hh8a_ 80 YYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKID 159 (192)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGGGHHH
T ss_pred HHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHH
T ss_conf 98542499999999999986726736789986654363058899999999999789999999999998369980407999
Q ss_pred HHHHHHHHCCCHH
Q ss_conf 9999999339978
Q 002664 372 SLLTCLGKKGRVT 384 (895)
Q Consensus 372 ~l~~~~~~~g~~~ 384 (895)
..+..+.+....+
T Consensus 160 ~Al~~~~~~~~~~ 172 (192)
T d1hh8a_ 160 KAMECVWKQKLYE 172 (192)
T ss_dssp HHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHCC
T ss_conf 9999998361088
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.84 E-value=1.1e-07 Score=59.59 Aligned_cols=93 Identities=11% Similarity=0.014 Sum_probs=34.4
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q ss_conf 69999999970599989999999998669997887799999999933997899999999743999887789999999994
Q 002664 334 AYNTMIMGYGSVGKFDEAFSLFERLKQKGCIPSVIAYNSLLTCLGKKGRVTEAMKIFEAMKKDARPNNTTYNVLIDMLCK 413 (895)
Q Consensus 334 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 413 (895)
.+...+..+...|++++|+..|.+++...+ .+..+|..++.+|.+.|++++|+..|+.+....|.+..+|..++.++..
T Consensus 6 ~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p-~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~~ 84 (201)
T d2c2la1 6 ELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLE 84 (201)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 999999999986999999999999998599-9899998178987410000012478888887188738999999999998
Q ss_pred CCCHHHHHHHHHHH
Q ss_conf 49988999999999
Q 002664 414 AGNFEDALKFRDAM 427 (895)
Q Consensus 414 ~g~~~~A~~~~~~~ 427 (895)
.|++++|...++++
T Consensus 85 l~~~~~A~~~~~~a 98 (201)
T d2c2la1 85 MESYDEAIANLQRA 98 (201)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
T ss_conf 79999999999999
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.81 E-value=4.9e-09 Score=68.16 Aligned_cols=108 Identities=13% Similarity=-0.033 Sum_probs=39.6
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q ss_conf 99999999934997599999999853999978876999999997059998999999999866999788779999999993
Q 002664 300 YTSMIGVLCKSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLFERLKQKGCIPSVIAYNSLLTCLGK 379 (895)
Q Consensus 300 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 379 (895)
+..++..+.+.|+.+.|...+....... ...++..++..+...|++++|...|.++.+..+ .+...|+.++..+..
T Consensus 123 ~~~lg~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P-~~~~~~~~Lg~~~~~ 198 (497)
T d1ya0a1 123 SSQLGIISNKQTHTSAIVKPQSSSCSYI---CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVP-SNGQPYNQLAILASS 198 (497)
T ss_dssp --------------------CCHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TBSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHH
T ss_conf 9985799875899999999999882788---999999999999980247899999999998789-965999999999998
Q ss_pred CCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 39978999999997439998877899999999
Q 002664 380 KGRVTEAMKIFEAMKKDARPNNTTYNVLIDML 411 (895)
Q Consensus 380 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 411 (895)
.|+..+|+..|.+.....+|...++..|...+
T Consensus 199 ~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~ 230 (497)
T d1ya0a1 199 KGDHLTTIFYYCRSIAVKFPFPAASTNLQKAL 230 (497)
T ss_dssp TTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 69999999999999817999789999999999
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.78 E-value=3.1e-08 Score=63.10 Aligned_cols=26 Identities=15% Similarity=0.176 Sum_probs=8.3
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 69999999970599989999999998
Q 002664 334 AYNTMIMGYGSVGKFDEAFSLFERLK 359 (895)
Q Consensus 334 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 359 (895)
+|..++.+|...|++++|...|++++
T Consensus 40 ~~~~lg~~y~~~~~~~~Ai~~~~~al 65 (201)
T d2c2la1 40 YYTNRALCYLKMQQPEQALADCRRAL 65 (201)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99817898741000001247888888
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.78 E-value=8.5e-09 Score=66.67 Aligned_cols=96 Identities=8% Similarity=-0.008 Sum_probs=41.9
Q ss_pred CHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 88769999999970599989999999998669997887799999999933997899999999743999887789999999
Q 002664 331 CAYAYNTMIMGYGSVGKFDEAFSLFERLKQKGCIPSVIAYNSLLTCLGKKGRVTEAMKIFEAMKKDARPNNTTYNVLIDM 410 (895)
Q Consensus 331 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 410 (895)
+...+..++..+.+.|+.+.|...+....... ...++..++..+...|++++|+..|++.....|.+..+|+.++.+
T Consensus 119 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~ 195 (497)
T d1ya0a1 119 CRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI---CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAIL 195 (497)
T ss_dssp ------------------------CCHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 39999985799875899999999999882788---999999999999980247899999999998789965999999999
Q ss_pred HHHCCCHHHHHHHHHHHHH
Q ss_conf 9944998899999999988
Q 002664 411 LCKAGNFEDALKFRDAMKE 429 (895)
Q Consensus 411 ~~~~g~~~~A~~~~~~~~~ 429 (895)
+...|+..+|...|.+...
T Consensus 196 ~~~~~~~~~A~~~y~ral~ 214 (497)
T d1ya0a1 196 ASSKGDHLTTIFYYCRSIA 214 (497)
T ss_dssp HHHTTCHHHHHHHHHHHHS
T ss_pred HHHCCCHHHHHHHHHHHHH
T ss_conf 9986999999999999981
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.74 E-value=1.3e-06 Score=52.90 Aligned_cols=136 Identities=10% Similarity=-0.007 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q ss_conf 899999999998029975899999999887999999999999999996299989999999999779999-9888999999
Q 002664 751 HVTYSIIINGLCRVRKFNKAFVFWQEMQKQGFKPNTITYTTMISGLAKAGNITEANGLFERFKENGGVP-DSACYNAMME 829 (895)
Q Consensus 751 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~ 829 (895)
...+...+..|.+.|++++|+..|+++.+. .+.+...|..++.++...|++++|...++++++ ..| +...|..++.
T Consensus 10 a~~l~~~gn~~~~~~~y~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~--~~p~~~~a~~~~g~ 86 (159)
T d1a17a_ 10 AEELKTQANDYFKAKDYENAIKFYSQAIEL-NPSNAIYYGNRSLAYLRTECYGYALGDATRAIE--LDKKYIKGYYRRAA 86 (159)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH--HCCCCHHHHHHHHH
T ss_conf 999999999999958999999986602110-001133324567888740542128888999998--75446687799999
Q ss_pred HHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 9972099889999999998779977976699999999921998899999999999998666
Q 002664 830 GLSNANRAMDAYTLFEETRRKGFNIHTKTCVILLDALHKAECLEQAAIVGAVLRETAKSQH 890 (895)
Q Consensus 830 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~ 890 (895)
++...|++++|...+++++... |.+...+..+..+....+.......+...-........
T Consensus 87 ~~~~~g~~~eA~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 146 (159)
T d1a17a_ 87 SNMALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDS 146 (159)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_conf 9999499999999899998729-99799999999999999989899997573889986621
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.73 E-value=4.7e-07 Score=55.66 Aligned_cols=22 Identities=27% Similarity=0.223 Sum_probs=6.8
Q ss_pred HHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 9999997209988999999999
Q 002664 826 AMMEGLSNANRAMDAYTLFEET 847 (895)
Q Consensus 826 ~l~~~~~~~g~~~~A~~~~~~~ 847 (895)
.++.++...|++++|+..+++.
T Consensus 76 ~~g~~~~~~~~~~~A~~~~~~a 97 (117)
T d1elwa_ 76 RKAAALEFLNRFEEAKRTYEEG 97 (117)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHH
T ss_conf 8999999812799999999999
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.72 E-value=4.5e-06 Score=49.53 Aligned_cols=226 Identities=11% Similarity=0.038 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf 9999999999999349975999999998539999788769999999970----599989999999998669997887799
Q 002664 296 DDVTYTSMIGVLCKSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGS----VGKFDEAFSLFERLKQKGCIPSVIAYN 371 (895)
Q Consensus 296 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~ 371 (895)
|+..+..|+..+.+.+++++|+++|++..+.+ +..++..|+..|.. ..++..|...+......+ +.....
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~ 74 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 74 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCC---CCCHHH
T ss_conf 98999999999998779999999999999789---999999999999809996056999987501222111---111231
Q ss_pred HHHHHHHH----CCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHH--HHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 99999993----39978999999997439998877899999999--9449988999999999887989785339999999
Q 002664 372 SLLTCLGK----KGRVTEAMKIFEAMKKDARPNNTTYNVLIDML--CKAGNFEDALKFRDAMKEAGLFPNVMTVNIMVDR 445 (895)
Q Consensus 372 ~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 445 (895)
.+...+.. ..+.+.|...++......++............ ........+...+...... .+...+..+...
T Consensus 75 ~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~L~~~ 151 (265)
T d1ouva_ 75 LLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL---NDGDGCTILGSL 151 (265)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT---TCHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCC---CCCCHHHHHHHH
T ss_conf 35012243211212367798887655432146688763433237873310157788875552001---110104455556
Q ss_pred HHH----CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 996----49964899999982337999886339999999840----6998899999999985899865444999999999
Q 002664 446 LCK----AQKLDEAFSIFEGMDHKTCTPDAVTFCSLIDGLGK----NGRVDDAYKFYEKMLDTDQIPNAILYTSLIRNFF 517 (895)
Q Consensus 446 ~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 517 (895)
+.. ..+...+...+....+.+ +..+...++..+.. ..+.+.|..+|.+..+.+ ++..+..|+..|.
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~~y~ 225 (265)
T d1ouva_ 152 YDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQY 225 (265)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred HCCCCCCCCCCCCCHHHHHCCCCCC---CCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHCCC---CHHHHHHHHHHHH
T ss_conf 4068874334220001221132322---223322113121267654310344454676653036---8999999999998
Q ss_pred H----CCCHHHHHHHHHHHHHCC
Q ss_conf 5----399779999999998849
Q 002664 518 K----HGRKEDGHKIYKEMVQRG 536 (895)
Q Consensus 518 ~----~~~~~~A~~~~~~~~~~~ 536 (895)
. ..+..+|.+.|+.....|
T Consensus 226 ~G~g~~~n~~~A~~~~~kAa~~g 248 (265)
T d1ouva_ 226 NGEGVTRNEKQAIENFKKGCKLG 248 (265)
T ss_dssp TTSSSSCCSTTHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHCC
T ss_conf 39997618999999999999876
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.72 E-value=1.9e-06 Score=51.81 Aligned_cols=85 Identities=9% Similarity=-0.124 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 99999999996299989999999999779999-98889999999972099889999999998779977976699999999
Q 002664 788 TYTTMISGLAKAGNITEANGLFERFKENGGVP-DSACYNAMMEGLSNANRAMDAYTLFEETRRKGFNIHTKTCVILLDAL 866 (895)
Q Consensus 788 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 866 (895)
+|..+..+|.+.|++++|+..++++++ ..| ++.++..++.+|...|++++|+..+++++... |.+..+...+..+.
T Consensus 64 ~~~nla~~y~k~~~~~~A~~~~~~al~--~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~-P~n~~~~~~l~~~~ 140 (170)
T d1p5qa1 64 SHLNLAMCHLKLQAFSAAIESCNKALE--LDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQ 140 (170)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHH--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
T ss_conf 999999998864211011000000010--022310346777999987222999999999999729-89899999999999
Q ss_pred HHCCCHHHH
Q ss_conf 921998899
Q 002664 867 HKAECLEQA 875 (895)
Q Consensus 867 ~~~g~~~~A 875 (895)
...+...+.
T Consensus 141 ~~~~~~~~~ 149 (170)
T d1p5qa1 141 QRIRRQLAR 149 (170)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
T ss_conf 999999999
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.53 E-value=1.2e-05 Score=46.73 Aligned_cols=79 Identities=13% Similarity=-0.017 Sum_probs=35.9
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 9999999996299989999999999779999-988899999999720998899999999987799779766999999999
Q 002664 789 YTTMISGLAKAGNITEANGLFERFKENGGVP-DSACYNAMMEGLSNANRAMDAYTLFEETRRKGFNIHTKTCVILLDALH 867 (895)
Q Consensus 789 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 867 (895)
|..+..++...|++++|+..++++++ ..| +...+..++.++...|++++|+..+++++... |.+..+...+..+..
T Consensus 67 ~~Nla~~~~~l~~~~~Ai~~~~~al~--l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~-P~n~~~~~~l~~~~~ 143 (168)
T d1kt1a1 67 FLNLAMCYLKLREYTKAVECCDKALG--LDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQIFMCQK 143 (168)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHH--CCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHH
T ss_conf 98499998776220110002232220--131048899988999988278999999999999859-898999999999999
Q ss_pred HCC
Q ss_conf 219
Q 002664 868 KAE 870 (895)
Q Consensus 868 ~~g 870 (895)
..+
T Consensus 144 ~~~ 146 (168)
T d1kt1a1 144 KAK 146 (168)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 998
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.39 E-value=7e-06 Score=48.31 Aligned_cols=76 Identities=11% Similarity=-0.027 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 99999999996299989999999999779999-98889999999972099889999999998779977976699999999
Q 002664 788 TYTTMISGLAKAGNITEANGLFERFKENGGVP-DSACYNAMMEGLSNANRAMDAYTLFEETRRKGFNIHTKTCVILLDAL 866 (895)
Q Consensus 788 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 866 (895)
.+..+..++.+.|++++|+..++++++ ..| ++..|..++.++...|++++|+..++++++.. |.+..+...+..+.
T Consensus 79 ~~~nla~~~~~~~~~~~Ai~~~~~al~--~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~-p~n~~~~~~l~~~~ 155 (169)
T d1ihga1 79 CVLNIGACKLKMSDWQGAVDSCLEALE--IDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVK 155 (169)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
T ss_conf 999899999864021013666554431--000223677769999998047999999999999859-89999999999999
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.39 E-value=3.1e-06 Score=50.57 Aligned_cols=56 Identities=7% Similarity=-0.028 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 888999999997209988999999999877997797669999999992199889999
Q 002664 821 SACYNAMMEGLSNANRAMDAYTLFEETRRKGFNIHTKTCVILLDALHKAECLEQAAI 877 (895)
Q Consensus 821 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 877 (895)
+..|..++.++...|++++|+..+++++... |.+...+..|+.+|...|++++|..
T Consensus 50 ~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~g~~~~A~~ 105 (112)
T d1hxia_ 50 EEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNANAALA 105 (112)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-CCCCCCHHHHHHHHHHCCCHHHHHH
T ss_conf 0012335456410125877410000011111-1000003789999999789999999
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.33 E-value=2.2e-05 Score=45.12 Aligned_cols=61 Identities=5% Similarity=-0.138 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC
Q ss_conf 99999999996299989999999999779999-9888999999997209988999999999877
Q 002664 788 TYTTMISGLAKAGNITEANGLFERFKENGGVP-DSACYNAMMEGLSNANRAMDAYTLFEETRRK 850 (895)
Q Consensus 788 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 850 (895)
++..++.+|.+.|++++|++.++++++ ..| +..+|..++.++...|++++|+..+++.+..
T Consensus 69 ~~~Nla~~~~~l~~~~~Al~~~~~al~--~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l 130 (153)
T d2fbna1 69 CNLNLATCYNKNKDYPKAIDHASKVLK--IDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL 130 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHCCCC--CCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 996199999984653011101000100--00000124677689999968999999999999982
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.26 E-value=7.2e-06 Score=48.21 Aligned_cols=27 Identities=7% Similarity=-0.109 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 999999999962999899999999997
Q 002664 788 TYTTMISGLAKAGNITEANGLFERFKE 814 (895)
Q Consensus 788 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 814 (895)
+|..++.++.+.|++++|+..++++++
T Consensus 52 a~~~lg~~~~~~~~~~~A~~~~~~al~ 78 (112)
T d1hxia_ 52 AWRSLGLTQAENEKDGLAIIALNHARM 78 (112)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 123354564101258774100000111
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.20 E-value=6.8e-06 Score=48.36 Aligned_cols=116 Identities=10% Similarity=-0.037 Sum_probs=0.0
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHH---HHHHHHHHHHCCCCC-CHHHHHHHHH
Q ss_conf 999999998029975899999999887999999999999999996299989---999999999779999-9888999999
Q 002664 754 YSIIINGLCRVRKFNKAFVFWQEMQKQGFKPNTITYTTMISGLAKAGNITE---ANGLFERFKENGGVP-DSACYNAMME 829 (895)
Q Consensus 754 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~p-~~~~~~~l~~ 829 (895)
...+++.+...+++++|.+.|++.... -+.+..++..++.++.+.++.+. |++++++++..+..| ...++..++.
T Consensus 2 ~~~l~n~~~~~~~l~~Ae~~Y~~aL~~-~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~ 80 (122)
T d1nzna_ 2 MEAVLNELVSVEDLLKFEKKFQSEKAA-GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV 80 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 777988736999999999999998832-9998999999999999851267899999999999860699319999999999
Q ss_pred HHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 997209988999999999877997797669999999992199
Q 002664 830 GLSNANRAMDAYTLFEETRRKGFNIHTKTCVILLDALHKAEC 871 (895)
Q Consensus 830 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 871 (895)
+|...|++++|+..+++++... |.+..+...+..+..+..+
T Consensus 81 ~y~~~g~~~~A~~~~~~aL~~~-P~~~~A~~l~~~I~~~~~k 121 (122)
T d1nzna_ 81 GNYRLKEYEKALKYVRGLLQTE-PQNNQAKELERLIDKAMKK 121 (122)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHCC
T ss_conf 9999731699999999999769-0989999999999998728
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=98.12 E-value=5.8e-06 Score=48.81 Aligned_cols=52 Identities=13% Similarity=0.074 Sum_probs=19.9
Q ss_pred HCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC
Q ss_conf 34997599999999853999978876999999997059998999999999866
Q 002664 309 KSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLFERLKQK 361 (895)
Q Consensus 309 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 361 (895)
+.|++++|+..+++.++..|. +...+..++..++..|++++|...++...+.
T Consensus 8 ~~G~l~eAl~~l~~al~~~P~-d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l 59 (264)
T d1zbpa1 8 SEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKL 59 (264)
T ss_dssp TTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 888999999999999997899-9999999999999879999999999999986
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.11 E-value=3.9e-05 Score=43.59 Aligned_cols=107 Identities=12% Similarity=0.125 Sum_probs=0.0
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCH--------HHHH
Q ss_conf 99999999802997589999999988799999999999999999629998999999999977999998--------8899
Q 002664 754 YSIIINGLCRVRKFNKAFVFWQEMQKQGFKPNTITYTTMISGLAKAGNITEANGLFERFKENGGVPDS--------ACYN 825 (895)
Q Consensus 754 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--------~~~~ 825 (895)
+-.++..+...|++++|+..|++..+. .+.+...+..+..++...|++++|+..++++++ +.|+. .+|.
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~-~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~--l~~~~~~~~~~~a~~~~ 83 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKEL-DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIE--VGRENREDYRQIAKAYA 83 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHH
T ss_conf 999999999859999999999999884-964589998688999881860778999999998--68012788988999999
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 9999997209988999999999877997797669999999
Q 002664 826 AMMEGLSNANRAMDAYTLFEETRRKGFNIHTKTCVILLDA 865 (895)
Q Consensus 826 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 865 (895)
.++..+...+++++|+..+++.+.. .++......+..+
T Consensus 84 ~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~~l~~~ 121 (128)
T d1elra_ 84 RIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQQA 121 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHC--CCCHHHHHHHHHH
T ss_conf 9999999938899999999999845--9999999999999
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.80 E-value=0.00052 Score=36.51 Aligned_cols=304 Identities=9% Similarity=0.068 Sum_probs=0.0
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC
Q ss_conf 99998589876988799999999913993689999999997699758987999999999439946899999998758988
Q 002664 180 IQTMRKFKFRPAFTAYTTLIGALATVRESNLMLNLFHQMQELGYEVSVHLFTTLIRVFAREGRVDDALFLLDEMKNNAFS 259 (895)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 259 (895)
+.++.+.--.++..-...++..+.+.|.++.|..+|..+.. +..++..+.+.+++..|.+++.+ .
T Consensus 2 ~~~~e~fl~~~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d---------~~rl~~~~v~l~~~~~avd~~~k------~ 66 (336)
T d1b89a_ 2 LAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGARK------A 66 (336)
T ss_dssp HHHHTTTTTCC----------------CTTTHHHHHHHTTC---------HHHHHHHHHTTTCHHHHHHHHHH------H
T ss_pred CHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHCCC---------HHHHHHHHHHHCCHHHHHHHHHH------C
T ss_conf 45699987589857899999999878779999999986789---------99999999703159999999988------0
Q ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 78686999999999439944699999999879999999999999999993499759999999985399997887699999
Q 002664 260 VDIVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGVAPDDVTYTSMIGVLCKSKRLEEAVAMFEQMDRNREVPCAYAYNTMI 339 (895)
Q Consensus 260 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 339 (895)
.+..+|..+...+.+......+ .+.......++.....++..|...|.+++...+++........ +...++.++
T Consensus 67 ~~~~~~k~~~~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~-~~~~~~~L~ 140 (336)
T d1b89a_ 67 NSTRTWKEVCFACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERA-HMGMFTELA 140 (336)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTC-CHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCHHHHH-----HHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCC-CHHHHHHHH
T ss_conf 8899999999999727287899-----9999875357887899999998769859999999999757744-467999999
Q ss_pred HHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHH
Q ss_conf 99970599989999999998669997887799999999933997899999999743999887789999999994499889
Q 002664 340 MGYGSVGKFDEAFSLFERLKQKGCIPSVIAYNSLLTCLGKKGRVTEAMKIFEAMKKDARPNNTTYNVLIDMLCKAGNFED 419 (895)
Q Consensus 340 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 419 (895)
..|++. ...++.+.+...+ +..-...++..+.+.+-+.++.-++..+ |.++.
T Consensus 141 ~lyak~----~~~kl~e~l~~~s---~~y~~~k~~~~c~~~~l~~elv~Ly~~~---------------------~~~~~ 192 (336)
T d1b89a_ 141 ILYSKF----KPQKMREHLELFW---SRVNIPKVLRAAEQAHLWAELVFLYDKY---------------------EEYDN 192 (336)
T ss_dssp HHHHTT----CHHHHHHHHHHHS---TTSCHHHHHHHHHTTTCHHHHHHHHHHT---------------------TCHHH
T ss_pred HHHHHH----CHHHHHHHHHHCC---CCCCHHHHHHHHHHCCCHHHHHHHHHHC---------------------CCHHH
T ss_conf 999986----9499999998602---3599999999988748749999999855---------------------87999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 99999999887989785339999999996499648999999823379998863399999998406998899999999985
Q 002664 420 ALKFRDAMKEAGLFPNVMTVNIMVDRLCKAQKLDEAFSIFEGMDHKTCTPDAVTFCSLIDGLGKNGRVDDAYKFYEKMLD 499 (895)
Q Consensus 420 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 499 (895)
|..+.-.-. ++.......+..+.+..+.+...+........ .+.....++......-+.....+.+++
T Consensus 193 A~~~~i~~~-----~~~~~~~~f~e~~~k~~N~e~~~~~i~~yL~~----~p~~i~~lL~~v~~~~d~~r~V~~~~k--- 260 (336)
T d1b89a_ 193 AIITMMNHP-----TDAWKEGQFKDIITKVANVELYYRAIQFYLEF----KPLLLNDLLMVLSPRLDHTRAVNYFSK--- 260 (336)
T ss_dssp HHHHHHHST-----TTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH----CGGGHHHHHHHHGGGCCHHHHHHHHHH---
T ss_pred HHHHHHHCC-----HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC----CHHHHHHHHHHHCCCCCHHHHHHHHHH---
T ss_conf 999999765-----44566999999997247869999999999975----999999999985657998999999985---
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 8998654449999999995399779999999998849998976399999999983991599999999
Q 002664 500 TDQIPNAILYTSLIRNFFKHGRKEDGHKIYKEMVQRGCSPDLMLLNTYMDCVFKAGETEKGRALFEE 566 (895)
Q Consensus 500 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 566 (895)
.++.......++.....+ +..+.+++...+...++++.-....+.
T Consensus 261 -------------------~~~l~li~p~Le~v~~~n---~~~vn~al~~lyie~~d~~~l~~~i~~ 305 (336)
T d1b89a_ 261 -------------------VKQLPLVKPYLRSVQNHN---NKSVNESLNNLFITEEDYQALRTSIDA 305 (336)
T ss_dssp -------------------TTCTTTTHHHHHHHHTTC---CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -------------------CCCCHHHHHHHHHHHHCC---HHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf -------------------388077999999999818---099999999998671246789999987
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.77 E-value=0.00012 Score=40.41 Aligned_cols=117 Identities=13% Similarity=-0.023 Sum_probs=0.0
Q ss_pred HHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----------CCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 9934997599999999853999978876999999997----------059998999999999866999788779999999
Q 002664 307 LCKSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYG----------SVGKFDEAFSLFERLKQKGCIPSVIAYNSLLTC 376 (895)
Q Consensus 307 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~----------~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 376 (895)
+-+.+.+++|+..|+......|. +..++..++.++. ..+.+++|...|+++++.++. +..+|..++.+
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~P~-~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~-~~~a~~~lG~~ 84 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNA 84 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHH
T ss_conf 99873699999999999861883-10899999999987621333367788788899999998873012-05877668999
Q ss_pred HHHCCC-----------HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC
Q ss_conf 993399-----------78999999997439998877899999999944998899999999988798
Q 002664 377 LGKKGR-----------VTEAMKIFEAMKKDARPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEAGL 432 (895)
Q Consensus 377 ~~~~g~-----------~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 432 (895)
|...|+ ++.|.+.|+......|.+...+..+... .+|..++.+..+.|+
T Consensus 85 y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~-------~ka~~~~~e~~k~~~ 144 (145)
T d1zu2a1 85 YTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMT-------AKAPQLHAEAYKQGL 144 (145)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH-------HTHHHHHHHHHHSSS
T ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH-------HHHHHHHHHHHHHHC
T ss_conf 987010113578898867876312110002598889999999999-------997978999998735
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.60 E-value=0.001 Score=34.59 Aligned_cols=135 Identities=12% Similarity=0.071 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 42899999999218868999999999858987698879999999991399368999999999769975898799999999
Q 002664 158 NTCIELVVSCVKSKMLREAFDIIQTMRKFKFRPAFTAYTTLIGALATVRESNLMLNLFHQMQELGYEVSVHLFTTLIRVF 237 (895)
Q Consensus 158 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 237 (895)
.............|++++|...|.........+-.. .......+...-..+... ....+..++..+
T Consensus 12 ~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~----------~~~~~~w~~~~r~~l~~~----~~~a~~~la~~~ 77 (179)
T d2ff4a2 12 VAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLD----------DLRDFQFVEPFATALVED----KVLAHTAKAEAE 77 (179)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTG----------GGTTSTTHHHHHHHHHHH----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCC----------CCCCHHHHHHHHHHHHHH----HHHHHHHHHHHH
T ss_conf 999999999998879999999999998638613112----------576318999999999999----999999999999
Q ss_pred HHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH-----HHCCCCCCHHHHHHHHHHH
Q ss_conf 943994689999999875898878686999999999439944699999999-----8799999999999999999
Q 002664 238 AREGRVDDALFLLDEMKNNAFSVDIVLYNVCIDCFGKVGKVDMAWKFFHEM-----KAQGVAPDDVTYTSMIGVL 307 (895)
Q Consensus 238 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~~g~~p~~~~~~~l~~~~ 307 (895)
...|++++|...++.+.... +.+...|..++.++...|+..+|...|+++ .+.|+.|+..+....-.+.
T Consensus 78 ~~~g~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~~l~~~il 151 (179)
T d2ff4a2 78 IACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNERIL 151 (179)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHH
T ss_pred HHCCCCHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 88799057899999999849-851999999999999855799999999999999899848996899999999998
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.55 E-value=0.00083 Score=35.24 Aligned_cols=96 Identities=11% Similarity=0.044 Sum_probs=0.0
Q ss_pred HHHHHH--HHHHHHCCCHHHHHHHHHHHHHC-CCCCC----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC
Q ss_conf 999999--99998029975899999999887-99999----------999999999999629998999999999977999
Q 002664 752 VTYSII--INGLCRVRKFNKAFVFWQEMQKQ-GFKPN----------TITYTTMISGLAKAGNITEANGLFERFKENGGV 818 (895)
Q Consensus 752 ~~~~~l--~~~~~~~~~~~~A~~~~~~~~~~-~~~p~----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 818 (895)
.+|..+ +..+...|++++|+..|++..+. .-.|+ ...|..+..++...|++++|+..+++.++ +.
T Consensus 8 ~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~--~~ 85 (156)
T d2hr2a1 8 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALH--YF 85 (156)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH--CC
T ss_conf 9999999999999859999999999999986844201020012102799999999999982863001576643553--04
Q ss_pred C------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 9------------988899999999720998899999999987
Q 002664 819 P------------DSACYNAMMEGLSNANRAMDAYTLFEETRR 849 (895)
Q Consensus 819 p------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 849 (895)
| ....+..++.+|...|++++|+..++++++
T Consensus 86 ~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 86 NRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 3100245544311278775269999988888888999999998
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.26 E-value=0.0013 Score=33.99 Aligned_cols=25 Identities=8% Similarity=-0.021 Sum_probs=8.2
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 9999999720998899999999987
Q 002664 825 NAMMEGLSNANRAMDAYTLFEETRR 849 (895)
Q Consensus 825 ~~l~~~~~~~g~~~~A~~~~~~~~~ 849 (895)
..|+.++.+.|++++|+..++++++
T Consensus 50 ~~Lg~~~~~~g~~~~A~~~y~~aL~ 74 (95)
T d1tjca_ 50 DYLSYAVYQQGDLDKALLLTKKLLE 74 (95)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 9872688865773988878877988
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=97.15 E-value=0.0035 Score=31.30 Aligned_cols=16 Identities=13% Similarity=0.021 Sum_probs=5.3
Q ss_pred HHHHCCCHHHHHHHHH
Q ss_conf 9992188689999999
Q 002664 166 SCVKSKMLREAFDIIQ 181 (895)
Q Consensus 166 ~~~~~~~~~~A~~~~~ 181 (895)
+....|+...|...+.
T Consensus 111 A~~~~g~~~~a~~~~~ 126 (450)
T d1qsaa1 111 AKWNTGQSEEAWQGAK 126 (450)
T ss_dssp HHHHTTCHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHH
T ss_conf 9987598488999999
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=95.15 E-value=0.043 Score=24.46 Aligned_cols=49 Identities=6% Similarity=-0.179 Sum_probs=20.2
Q ss_pred HHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 9996299989999999999779999988899999999720998899999999
Q 002664 795 GLAKAGNITEANGLFERFKENGGVPDSACYNAMMEGLSNANRAMDAYTLFEE 846 (895)
Q Consensus 795 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 846 (895)
.+...|....|...+..+... .++.....++....+.|.++.|+.....
T Consensus 390 ~L~~~g~~~~A~~e~~~l~~~---~~~~~~~~la~lA~~~g~~~~aI~a~~~ 438 (450)
T d1qsaa1 390 ELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQWWDLSVQATIA 438 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHCCCCHHHHHHHHHHHHC---CCHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 999869946999999999867---9999999999999987984699999999
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=94.55 E-value=0.061 Score=23.47 Aligned_cols=110 Identities=8% Similarity=-0.007 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----CCCHHHHH
Q ss_conf 94689999999875898878686999999999439944699999999879999999999999999993----49975999
Q 002664 242 RVDDALFLLDEMKNNAFSVDIVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGVAPDDVTYTSMIGVLCK----SKRLEEAV 317 (895)
Q Consensus 242 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~ 317 (895)
++++|..+|.+..+.+ +...+..+.. ....+.++|.+.++...+.| +...+..|...|.. ..++++|.
T Consensus 8 d~~~A~~~~~kaa~~g---~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~ 79 (133)
T d1klxa_ 8 DLKKAIQYYVKACELN---EMFGCLSLVS--NSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 79 (133)
T ss_dssp HHHHHHHHHHHHHHTT---CTTHHHHHHT--CTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHHCC---CHHHHHHHCC--CCCCCHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf 9999999999999879---9154565410--11238999999876541133---12555567875330135310357888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHCC
Q ss_conf 999998539999788769999999970----599989999999998669
Q 002664 318 AMFEQMDRNREVPCAYAYNTMIMGYGS----VGKFDEAFSLFERLKQKG 362 (895)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 362 (895)
++|++..+.+ +..+...|...|.. ..+.++|..+|++..+.|
T Consensus 80 ~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 80 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 125 (133)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHCCC---CCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCC
T ss_conf 8875000257---406778999999829846778999999999999878
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.46 E-value=0.099 Score=22.15 Aligned_cols=28 Identities=11% Similarity=0.046 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHC
Q ss_conf 8999999997209988999999999877
Q 002664 823 CYNAMMEGLSNANRAMDAYTLFEETRRK 850 (895)
Q Consensus 823 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 850 (895)
++..|+-+|++.|++++|++.++.+++.
T Consensus 75 ~lY~Lav~yyklgdy~~A~~~~~~~L~i 102 (124)
T d2pqrb1 75 CLYYLTIGCYKLGEYSMAKRYVDTLFEH 102 (124)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 9999999999873299999999999823
|