BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002665
(895 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2R60|A Chain A, Structure Of Apo Sucrose Phosphate Synthase (Sps) Of
Halothermothrix Orenii
pdb|2R66|A Chain A, Complex Structure Of Sucrose Phosphate Synthase (Sps)-F6p
Of Halothermothrix Orenii
pdb|2R68|A Chain A, Complex Structure Of Sucrose Phosphate Synthase (Sps)-S6p
Of Halothermothrix Orenii
Length = 499
Score = 181 bits (460), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 153/495 (30%), Positives = 229/495 (46%), Gaps = 74/495 (14%)
Query: 30 DTGGQVKYVVELARALGSMPGVYRVDLLTRQVSAPDVDWTYAEPSEMLNRKNTENLMQGL 89
D GGQ+ YV E++ AL M GV +VD++TR++ D + E S ++ N ++
Sbjct: 31 DFGGQLVYVKEVSLALAEM-GV-QVDIITRRIK----DENWPEFSGEIDYYQETNKVR-- 82
Query: 90 GESSGAYIIRIPFGPKDKYVQKELLWPHIPEFVDAALTHIIQISKVLGEQVGSGQPIWPV 149
I+RIPFG DK++ KE LWP++ E+V+ II + G+ +P
Sbjct: 83 -------IVRIPFG-GDKFLPKEELWPYLHEYVN----KIINFYREEGK--------FPQ 122
Query: 150 AIHGHYXXXXXXXXXXXXXXNVPMVFTGHSLGRDKLEQLLKQGRLSRDEINTTYKIMRRI 209
+ HY +P FTGHSLG K+E+L + E++ +K RRI
Sbjct: 123 VVTTHYGDGGLAGVLLKNIKGLPFTFTGHSLGAQKMEKL-NVNTSNFKEMDERFKFHRRI 181
Query: 210 EAEELSLDASEIVITSTRQEIEEQWR--LYDGFDPVLERKLRARIKRGVSCHGRFMPRMV 267
AE L++ ++ +I ST QE Q+ LY G V + +
Sbjct: 182 IAERLTMSYADKIIVSTSQERFGQYSHDLYRGAVNVEDDD-----------------KFS 224
Query: 268 VIPPGIEFHHIVRHNGD-----VDGEVERDEGSPASPDPPIWSEIMHFFSNPRKPMILAL 322
VIPPG+ GD + +ERD GS E M P I+A
Sbjct: 225 VIPPGVNTRVFDGEYGDKIKAKITKYLERDLGS----------ERMEL------PAIIAS 268
Query: 323 ARPDPKKNITTLVKAFGECRPLRELANLTL----IMGNRDDIDEMSGTNAALLLSILKLI 378
+R D KKN LV+A+ + + L++ ANL L I +D +L I++LI
Sbjct: 269 SRLDQKKNHYGLVEAYVQNKELQDKANLVLTLRGIENPFEDYSRAGQEEKEILGKIIELI 328
Query: 379 DKYDLYGQVAYPKHHKQSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAYGLPIVAT 438
D D G+V+ + Q ++ Y A VF +F EPFGL +EA A GLP V T
Sbjct: 329 DNNDCRGKVSMFPLNSQQELAGCYAYLASKGSVFALTSFYEPFGLAPVEAMASGLPAVVT 388
Query: 439 KNGGPVDIHRVLDNGLLVDPHDQQSIADALLKLVSDKQLWERCRQNGLKNIHQ-FSWPEH 497
+NGGP +I G+LVDP D + IA LLK ++ W ++ G + + + ++W E
Sbjct: 389 RNGGPAEILDGGKYGVLVDPEDPEDIARGLLKAFESEETWSAYQEKGKQRVEERYTWQET 448
Query: 498 CKSYLSRISSCKQRQ 512
+ YL I R+
Sbjct: 449 ARGYLEVIQEIADRK 463
>pdb|3S28|A Chain A, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|B Chain B, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|C Chain C, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|D Chain D, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|E Chain E, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|F Chain F, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|G Chain G, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|H Chain H, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S29|A Chain A, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|B Chain B, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|C Chain C, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|D Chain D, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|E Chain E, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|F Chain F, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|G Chain G, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|H Chain H, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications
Length = 816
Score = 127 bits (319), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 135/525 (25%), Positives = 232/525 (44%), Gaps = 66/525 (12%)
Query: 6 FNMKYLCSLHGLIRGENMELGRDSDTGGQVKYVVELARALG-------SMPGVY---RVD 55
FN+ L S HG +N+ LG DTGGQV Y+++ RAL G+ R+
Sbjct: 279 FNVVIL-SPHGYFAQDNV-LGY-PDTGGQVVYILDQVRALEIEMLQRIKQQGLNIKPRIL 335
Query: 56 LLTRQVSAPDVDWTYAEPSEMLNRKNTENLMQGLGESSGAYIIRIPF----GPKDKYVQK 111
+LTR + PD T E L R + +S I+R+PF G K++ +
Sbjct: 336 ILTRLL--PDAVGTTC--GERLER---------VYDSEYCDILRVPFRTEKGIVRKWISR 382
Query: 112 ELLWPHIPEFVDAALTHIIQISKVLGEQVGSGQPIWPVAIHGHYXXXXXXXXXXXXXXNV 171
+WP++ + + A +++SK L + P I G+Y V
Sbjct: 383 FEVWPYLETYTEDA---AVELSKELNGK--------PDLIIGNYSDGNLVASLLAHKLGV 431
Query: 172 PMVFTGHSLGRDKLEQLLKQGRLSRDEINTTYKIMRRIEAEELSLDASEIVITSTRQEIE 231
H+L + K + +++ Y + A+ +++ ++ +ITST QEI
Sbjct: 432 TQCTIAHALEKTKY----PDSDIYWKKLDDKYHFSCQFTADIFAMNHTDFIITSTFQEIA 487
Query: 232 EQWRLYDGFDPVLERKLRA--RIKRGVSCHGRFMPRMVVIPPGIEFHHIVRHNGDVDGEV 289
++ L R+ G+ F P+ ++ PG + + E
Sbjct: 488 GSKETVGQYESHTAFTLPGLYRVVHGIDV---FDPKFNIVSPGADMSIYFPYTE----EK 540
Query: 290 ERDEGSPASPDPPIWSEI-----MHFFSNPRKPMILALARPDPKKNITTLVKAFGECRPL 344
R + + ++S++ + + +KP++ +AR D KN++ LV+ +G+ L
Sbjct: 541 RRLTKFHSEIEELLYSDVENKEHLCVLKDKKKPILFTMARLDRVKNLSGLVEWYGKNTRL 600
Query: 345 RELANLTLIMGNRDDIDEMSGTNAALLLSILKLIDKYDLYGQVAY-PKHHKQSDVPDIYR 403
RELANL ++ G+R + A + + LI++Y L GQ + + ++YR
Sbjct: 601 RELANLVVVGGDRRK-ESKDNEEKAEMKKMYDLIEEYKLNGQFRWISSQMDRVRNGELYR 659
Query: 404 LAAKTKGVFINPAFIEPFGLTLIEAAAYGLPIVATKNGGPVDIHRVLDNGLLVDPH--DQ 461
TKG F+ PA E FGLT++EA GLP AT GGP +I +G +DP+ DQ
Sbjct: 660 YICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVHGKSGFHIDPYHGDQ 719
Query: 462 --QSIADALLKLVSDKQLWERCRQNGLKNIHQ-FSWPEHCKSYLS 503
++AD K D W+ + GL+ I + ++W + + L+
Sbjct: 720 AADTLADFFTKCKEDPSHWDEISKGGLQRIEEKYTWQIYSQRLLT 764
>pdb|3S27|A Chain A, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|B Chain B, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|C Chain C, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|D Chain D, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|E Chain E, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|F Chain F, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|G Chain G, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|H Chain H, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications
Length = 816
Score = 122 bits (306), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 137/526 (26%), Positives = 225/526 (42%), Gaps = 68/526 (12%)
Query: 6 FNMKYLCSLHGLIRGENMELGRDSDTGGQVKYVVELARALG-------SMPGVY---RVD 55
FN+ L S HG +N+ LG DTGGQV Y+++ RAL G+ R+
Sbjct: 279 FNVVIL-SPHGYFAQDNV-LGY-PDTGGQVVYILDQVRALEIEXLQRIKQQGLNIKPRIL 335
Query: 56 LLTRQVSAPDVDWTYAEPSEMLNRKNTENLMQGLGESSGAYIIRIPF----GPKDKYVQK 111
+LTR + PD T E L R + +S I+R+PF G K++ +
Sbjct: 336 ILTRLL--PDAVGTTC--GERLER---------VYDSEYCDILRVPFRTEKGIVRKWISR 382
Query: 112 ELLWPHIPEFVDAALTHIIQISKVLGEQVGSGQPIWPVAIHGHYXXXXXXXXXXXXXXNV 171
+WP++ + + A +++SK L + P I G+Y V
Sbjct: 383 FEVWPYLETYTEDA---AVELSKELNGK--------PDLIIGNYSDGNLVASLLAHKLGV 431
Query: 172 PMVFTGHSLGRDKLEQLLKQGRLSRDEINTTYKIMRRIEAEELSLDASEIVITSTRQEIE 231
H+L + K + +++ Y + A+ + + ++ +ITST QEI
Sbjct: 432 TQCTIAHALEKTKY----PDSDIYWKKLDDKYHFSCQFTADIFAXNHTDFIITSTFQEIA 487
Query: 232 EQWRLYDGFDPVLERKLRA--RIKRGVSCHGRFMPRMVVIPPGIE------FHHIVRHNG 283
++ L R+ G+ F P+ ++ PG + + R
Sbjct: 488 GSKETVGQYESHTAFTLPGLYRVVHGIDV---FDPKFNIVSPGADXSIYFPYTEEKRRLT 544
Query: 284 DVDGEVERDEGSPASPDPPIWSEIMHFFSNPRKPMILALARPDPKKNITTLVKAFGECRP 343
E+E S E + + +KP++ AR D KN++ LV+ +G+
Sbjct: 545 KFHSEIEELLYSDVEN-----KEHLCVLKDKKKPILFTXARLDRVKNLSGLVEWYGKNTR 599
Query: 344 LRELANLTLIMGNRDDIDEMSGTNAALLLSILKLIDKYDLYGQVAY-PKHHKQSDVPDIY 402
LRELANL ++ G+R + A LI++Y L GQ + + ++Y
Sbjct: 600 LRELANLVVVGGDRRK-ESKDNEEKAEXKKXYDLIEEYKLNGQFRWISSQXDRVRNGELY 658
Query: 403 RLAAKTKGVFINPAFIEPFGLTLIEAAAYGLPIVATKNGGPVDIHRVLDNGLLVDPH--D 460
R TKG F+ PA E FGLT++EA GLP AT GGP +I +G +DP+ D
Sbjct: 659 RYICDTKGAFVQPALYEAFGLTVVEAXTCGLPTFATCKGGPAEIIVHGKSGFHIDPYHGD 718
Query: 461 Q--QSIADALLKLVSDKQLWERCRQNGLKNIHQ-FSWPEHCKSYLS 503
Q ++AD K D W+ + GL+ I + ++W + + L+
Sbjct: 719 QAADTLADFFTKCKEDPSHWDEISKGGLQRIEEKYTWQIYSQRLLT 764
>pdb|3C4Q|A Chain A, Structure Of The Retaining Glycosyltransferase Msha : The
First Step In Mycothiol Biosynthesis. Organism :
Corynebacterium Glutamicum- Complex With Udp
pdb|3C4Q|B Chain B, Structure Of The Retaining Glycosyltransferase Msha : The
First Step In Mycothiol Biosynthesis. Organism :
Corynebacterium Glutamicum- Complex With Udp
pdb|3C4V|A Chain A, Structure Of The Retaining Glycosyltransferase Msha:the
First Step In Mycothiol Biosynthesis. Organism:
Corynebacterium Glutamicum : Complex With Udp And
1l-Ins-1- P.
pdb|3C4V|B Chain B, Structure Of The Retaining Glycosyltransferase Msha:the
First Step In Mycothiol Biosynthesis. Organism:
Corynebacterium Glutamicum : Complex With Udp And
1l-Ins-1- P
Length = 426
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 80/345 (23%), Positives = 140/345 (40%), Gaps = 60/345 (17%)
Query: 151 IHGHYXXXXXXXXXXXXXXNVPMVFTGHSLGRDKLEQLLKQGRLSRDEINTTYKIMRRIE 210
IH HY +P++ T H+L K RD+ +T RRI
Sbjct: 106 IHSHYWLSGQVGWLLRDLWRIPLIHTAHTLAAVK--------NSYRDDSDTPESEARRIC 157
Query: 211 AEELSLDASEIVITSTRQEIEEQWRLYDGFDPVLERKLRARIKRGVSCHGRFMPRMVVIP 270
++L +D ++++ +T++E+++ YD DP R+ V+
Sbjct: 158 EQQL-VDNADVLAVNTQEEMQDLMHHYDA-DP---------------------DRISVVS 194
Query: 271 PGIEFHHIVRHNGDVDGEVERDEGSPASPDPPIWSEIMHFFSNPRKPMILALARPDPKKN 330
PG + N R+ G P + ++++ F + R P K
Sbjct: 195 PGADVELYSPGNDRATERSRRELGIP------LHTKVVAF-----------VGRLQPFKG 237
Query: 331 ITTLVKAFGECRPLRELANLTLIMGNRDDIDEMSGTNAALLLSILKLIDKYDLYGQVAYP 390
L+KA NL +I+ SG NA + + ++ + ++ +
Sbjct: 238 PQVLIKAVAALFDRDPDRNLRVIICGGP-----SGPNATPD-TYRHMAEELGVEKRIRFL 291
Query: 391 KHHKQSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAYGLPIVATKNGG-PVDIHRV 449
S++ +YR A + P+F E FGL +EA A G P++A + GG P+ +
Sbjct: 292 DPRPPSELVAVYRAA----DIVAVPSFNESFGLVAMEAQASGTPVIAARVGGLPIAVAEG 347
Query: 450 LDNGLLVDPHDQQSIADALLKLVSDKQLWERCRQNGLKNIHQFSW 494
+ GLLVD H + ADAL L+ D + R ++ +++ FSW
Sbjct: 348 -ETGLLVDGHSPHAWADALATLLDDDETRIRMGEDAVEHARTFSW 391
>pdb|3C48|A Chain A, Structure Of The Retaining Glycosyltransferase Msha: The
First Step In Mycothiol Biosynthesis. Organism:
Corynebacterium Glutamicum- Apo (Open) Structure.
pdb|3C48|B Chain B, Structure Of The Retaining Glycosyltransferase Msha: The
First Step In Mycothiol Biosynthesis. Organism:
Corynebacterium Glutamicum- Apo (Open) Structure
Length = 438
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 80/345 (23%), Positives = 140/345 (40%), Gaps = 60/345 (17%)
Query: 151 IHGHYXXXXXXXXXXXXXXNVPMVFTGHSLGRDKLEQLLKQGRLSRDEINTTYKIMRRIE 210
IH HY +P++ T H+L K RD+ +T RRI
Sbjct: 126 IHSHYWLSGQVGWLLRDLWRIPLIHTAHTLAAVK--------NSYRDDSDTPESEARRIC 177
Query: 211 AEELSLDASEIVITSTRQEIEEQWRLYDGFDPVLERKLRARIKRGVSCHGRFMPRMVVIP 270
++L +D ++++ +T++E+++ YD DP R+ V+
Sbjct: 178 EQQL-VDNADVLAVNTQEEMQDLMHHYDA-DP---------------------DRISVVS 214
Query: 271 PGIEFHHIVRHNGDVDGEVERDEGSPASPDPPIWSEIMHFFSNPRKPMILALARPDPKKN 330
PG + N R+ G P + ++++ F + R P K
Sbjct: 215 PGADVELYSPGNDRATERSRRELGIP------LHTKVVAF-----------VGRLQPFKG 257
Query: 331 ITTLVKAFGECRPLRELANLTLIMGNRDDIDEMSGTNAALLLSILKLIDKYDLYGQVAYP 390
L+KA NL +I+ SG NA + + ++ + ++ +
Sbjct: 258 PQVLIKAVAALFDRDPDRNLRVIICGGP-----SGPNATPD-TYRHMAEELGVEKRIRFL 311
Query: 391 KHHKQSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAYGLPIVATKNGG-PVDIHRV 449
S++ +YR A + P+F E FGL +EA A G P++A + GG P+ +
Sbjct: 312 DPRPPSELVAVYRAA----DIVAVPSFNESFGLVAMEAQASGTPVIAARVGGLPIAVAEG 367
Query: 450 LDNGLLVDPHDQQSIADALLKLVSDKQLWERCRQNGLKNIHQFSW 494
+ GLLVD H + ADAL L+ D + R ++ +++ FSW
Sbjct: 368 -ETGLLVDGHSPHAWADALATLLDDDETRIRMGEDAVEHARTFSW 411
>pdb|2BIS|A Chain A, Structure Of Glycogen Synthase From Pyrococcus Abyssi
pdb|2BIS|B Chain B, Structure Of Glycogen Synthase From Pyrococcus Abyssi
pdb|2BIS|C Chain C, Structure Of Glycogen Synthase From Pyrococcus Abyssi
Length = 440
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 49/100 (49%), Gaps = 2/100 (2%)
Query: 413 INPAFIEPFGLTLIEAAAYGLPIVATKNGGPVDIHRVLDNGLLVDPHDQQSIADALLKLV 472
I P++ EPFGL +EA G +A+ GG DI + G+LV D +A+A+LK +
Sbjct: 336 IIPSYFEPFGLVALEAMCLGAIPIASAVGGLRDI-ITNETGILVKAGDPGELANAILKAL 394
Query: 473 S-DKQLWERCRQNGLKNIHQFSWPEHCKSYLSRISSCKQR 511
+ + R+N K FSW + + Y+ + R
Sbjct: 395 ELSRSDLSKFRENCKKRAMSFSWEKSAERYVKAYTGSIDR 434
>pdb|3FRO|A Chain A, Crystal Structure Of Pyrococcus Abyssi Glycogen Synthase
With Open And Closed Conformations
pdb|3FRO|B Chain B, Crystal Structure Of Pyrococcus Abyssi Glycogen Synthase
With Open And Closed Conformations
pdb|3FRO|C Chain C, Crystal Structure Of Pyrococcus Abyssi Glycogen Synthase
With Open And Closed Conformations
Length = 439
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 49/100 (49%), Gaps = 2/100 (2%)
Query: 413 INPAFIEPFGLTLIEAAAYGLPIVATKNGGPVDIHRVLDNGLLVDPHDQQSIADALLKLV 472
I P++ EPFGL +EA G +A+ GG DI + G+LV D +A+A+LK +
Sbjct: 335 IIPSYFEPFGLVALEAMCLGAIPIASAVGGLRDII-TNETGILVKAGDPGELANAILKAL 393
Query: 473 S-DKQLWERCRQNGLKNIHQFSWPEHCKSYLSRISSCKQR 511
+ + R+N K FSW + + Y+ + R
Sbjct: 394 ELSRSDLSKFRENCKKRAMSFSWEKSAERYVKAYTGSIDR 433
>pdb|3L01|A Chain A, Crystal Structure Of Monomeric Glycogen Synthase From
Pyrococcus Abyssi
pdb|3L01|B Chain B, Crystal Structure Of Monomeric Glycogen Synthase From
Pyrococcus Abyssi
Length = 428
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 47/91 (51%), Gaps = 2/91 (2%)
Query: 413 INPAFIEPFGLTLIEAAAYGLPIVATKNGGPVDIHRVLDNGLLVDPHDQQSIADALLKLV 472
I P++ EPFGL +EA G +A+ GG DI + G+LV D +A+A+LK +
Sbjct: 335 IIPSYFEPFGLVALEAMCLGAIPIASAVGGLRDI-ITNETGILVKAGDPGELANAILKAL 393
Query: 473 S-DKQLWERCRQNGLKNIHQFSWPEHCKSYL 502
+ + R+N K FSW + + Y+
Sbjct: 394 ELSRSDLSKFRENCKKRAMSFSWEKSAERYV 424
>pdb|3MBO|A Chain A, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|B Chain B, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|C Chain C, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|D Chain D, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|E Chain E, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|F Chain F, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|G Chain G, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|H Chain H, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
Length = 414
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 41/70 (58%), Gaps = 4/70 (5%)
Query: 419 EPFGLTLIEAAAYGLPIVATKNGGPVDIHRVLDNGLLVDPHDQQSIADALLKLVSDKQLW 478
E FGL L+EA A G+P + T+ GG ++ + D G L + D +AD ++L+ D++L
Sbjct: 315 ESFGLVLLEAMACGVPCIGTRVGGIPEVIQHGDTGYLCEVGDTTGVADQAIQLLKDEELH 374
Query: 479 ----ERCRQN 484
ER R++
Sbjct: 375 RNMGERARES 384
>pdb|2JJM|A Chain A, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|B Chain B, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|C Chain C, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|D Chain D, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|E Chain E, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|F Chain F, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|G Chain G, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|H Chain H, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|I Chain I, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|J Chain J, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|K Chain K, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|L Chain L, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558
Length = 394
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 41/70 (58%), Gaps = 4/70 (5%)
Query: 419 EPFGLTLIEAAAYGLPIVATKNGGPVDIHRVLDNGLLVDPHDQQSIADALLKLVSDKQLW 478
E FGL L+EA A G+P + T+ GG ++ + D G L + D +AD ++L+ D++L
Sbjct: 295 ESFGLVLLEAMACGVPCIGTRVGGIPEVIQHGDTGYLCEVGDTTGVADQAIQLLKDEELH 354
Query: 479 ----ERCRQN 484
ER R++
Sbjct: 355 RNMGERARES 364
>pdb|3OKC|A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb'
Bound To Gdp (Orthorhombic Crystal Form)
pdb|3OKP|A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb'
Bound To Gdp-Man (Orthorhombic Crystal Form)
Length = 394
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 86/182 (47%), Gaps = 17/182 (9%)
Query: 295 SPASPDPPIWSEIMHFFSNPRKPMILALARPDPKKNITTLVKAFGECRPLRELANLTLIM 354
+PA+P+ + F++ P+I +R P+K +L+KA + R A L ++
Sbjct: 178 TPATPEDKSATRKKLGFTD-TTPVIACNSRLVPRKGQDSLIKAMPQVIAARPDAQLLIVG 236
Query: 355 GNR-DDIDEMSGTNAALLLSILKLIDKYDLYGQVAYPKHHKQSDVPDIYRLAAKTKGVFI 413
R + T+ + + L ++ D+ +A DI+ + A+T+G +
Sbjct: 237 SGRYESTLRRLATDVSQNVKFLGRLEYQDMINTLA---------AADIFAMPARTRGGGL 287
Query: 414 NPAFIEPFGLTLIEAAAYGLPIVA-TKNGGPVDIHRVLDNGLLVDPHDQQSIADALLKLV 472
+ +E G+ +EA A G+P++A T G P + GL+V+ D +++ L++L+
Sbjct: 288 D---VEGLGIVYLEAQACGVPVIAGTSGGAPETVTPA--TGLVVEGSDVDKLSELLIELL 342
Query: 473 SD 474
D
Sbjct: 343 DD 344
>pdb|3OKA|A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb' In
Complex With Gdp-Man (Triclinic Crystal Form)
pdb|3OKA|B Chain B, Crystal Structure Of Corynebacterium Glutamicum Pimb' In
Complex With Gdp-Man (Triclinic Crystal Form)
Length = 381
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 86/182 (47%), Gaps = 17/182 (9%)
Query: 295 SPASPDPPIWSEIMHFFSNPRKPMILALARPDPKKNITTLVKAFGECRPLRELANLTLIM 354
+PA+P+ + F++ P+I +R P+K +L+KA + R A L ++
Sbjct: 178 TPATPEDKSATRKKLGFTD-TTPVIACNSRLVPRKGQDSLIKAMPQVIAARPDAQLLIVG 236
Query: 355 GNR-DDIDEMSGTNAALLLSILKLIDKYDLYGQVAYPKHHKQSDVPDIYRLAAKTKGVFI 413
R + T+ + + L ++ D+ +A DI+ + A+T+G +
Sbjct: 237 SGRYESTLRRLATDVSQNVKFLGRLEYQDMINTLA---------AADIFAMPARTRGGGL 287
Query: 414 NPAFIEPFGLTLIEAAAYGLPIVA-TKNGGPVDIHRVLDNGLLVDPHDQQSIADALLKLV 472
+ +E G+ +EA A G+P++A T G P + GL+V+ D +++ L++L+
Sbjct: 288 D---VEGLGIVYLEAQACGVPVIAGTSGGAPETVTPA--TGLVVEGSDVDKLSELLIELL 342
Query: 473 SD 474
D
Sbjct: 343 DD 344
>pdb|2BFW|A Chain A, Structure Of The C Domain Of Glycogen Synthase From
Pyrococcus Abyssi
Length = 200
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 413 INPAFIEPFGLTLIEAAAYGLPIVATKNGGPVDIHRVLDNGLLVDPHDQQSIADALLKLV 472
I P++ EPFGL +EA G +A+ GG DI + G+LV D +A+A+LK +
Sbjct: 120 IIPSYFEPFGLVALEAMCLGAIPIASAVGGLRDII-TNETGILVKAGDPGELANAILKAL 178
Query: 473 S-DKQLWERCRQNGLKNIHQFS 493
+ + R+N K FS
Sbjct: 179 ELSRSDLSKFRENCKKRAMSFS 200
>pdb|2GEJ|A Chain A, Crystal Structure Of Phosphatidylinositol
Mannosyltransferase (Pima) From Mycobacterium Smegmatis
In Complex With Gdp-Man
pdb|2GEK|A Chain A, Crystal Structure Of Phosphatidylinositol
Mannosyltransferase (Pima) From Mycobacterium Smegmatis
In Complex With Gdp
Length = 406
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 77/181 (42%), Gaps = 27/181 (14%)
Query: 319 ILALARPD-PKKNITTLVKAFGECRPLRELANLTLIMGNRDDIDEMSGTNAALLLSILKL 377
+L L R D P+K + L+ A + + ++ +++ R D DE+ A L L+
Sbjct: 211 VLFLGRYDEPRKGMAVLLAALPKL--VARFPDVEILIVGRGDEDELR-EQAGDLAGHLRF 267
Query: 378 IDKYDLYGQVAYPKHHKQSDVPDIYRLAAKTKGVFINPAFI-EPFGLTLIEAAAYGLPIV 436
+ + D + + A ++ V+ P E FG+ L+EA A G +V
Sbjct: 268 LGQVDDATKAS----------------AMRSADVYCAPHLGGESFGIVLVEAMAAGTAVV 311
Query: 437 ATKNGGPVDIHRVL---DNGLLVDPHDQQSIADALLKLVSDKQLWERCRQNGLKNIHQFS 493
A+ RVL D G LV D +A AL+ ++ D QL + +H++
Sbjct: 312 ASDLDA---FRRVLADGDAGRLVPVDDADGMAAALIGILEDDQLRAGYVARASERVHRYD 368
Query: 494 W 494
W
Sbjct: 369 W 369
>pdb|2IW1|A Chain A, Crystal Structure Of Waag, A Glycosyltransferase Involved
In Lipopolysaccharide Biosynthesis
Length = 374
Score = 34.3 bits (77), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 43/94 (45%), Gaps = 18/94 (19%)
Query: 411 VFINPAFIEPFGLTLIEAAAYGLPIVATKNGGPVDIHRVLDNG---LLVDPHDQQSIADA 467
+ ++PA+ E G+ L+EA GLP++ T G H + D ++ +P Q+ + +
Sbjct: 273 LLLHPAYQEAAGIVLLEAITAGLPVLTTAVCGYA--HYIADANCGTVIAEPFSQEQLNEV 330
Query: 468 LLKLVSDKQLWERCRQNGLKNIHQFSWPEHCKSY 501
L K ++ L + +W E+ + Y
Sbjct: 331 LRKALTQSPL-------------RMAWAENARHY 351
>pdb|2F9F|A Chain A, Crystal Structure Of The Putative Mannosyl Transferase
(Wbaz-1)from Archaeoglobus Fulgidus, Northeast
Structural Genomics Target Gr29a
Length = 177
Score = 32.7 bits (73), Expect = 0.90, Method: Composition-based stats.
Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 5/77 (6%)
Query: 395 QSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAYGLPIVATKNGGPVDIHRVLDNGL 454
+ ++ D+Y ++ KG+ A E FGLT IEA A G P++A GG + G
Sbjct: 88 EEELIDLY---SRCKGLLCT-AKDEDFGLTPIEAXASGKPVIAVNEGGFKETVINEKTGY 143
Query: 455 LVDPHDQQSIADALLKL 471
LV+ D I DA K+
Sbjct: 144 LVNA-DVNEIIDAXKKV 159
>pdb|2IV7|A Chain A, Crystal Structure Of Waag, A Glycosyltransferase Involved
In Lipopolysaccharide Biosynthesis
Length = 374
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Query: 414 NPAFIEPFGLTLIEAAAYGLPIVATKNGGPVDIHRVLDNG---LLVDPHDQQSIADALLK 470
+PA+ E G+ L+EA GLP++ T G H + D ++ +P Q+ + + L K
Sbjct: 276 HPAYQEAAGIVLLEAITAGLPVLTTAVCGYA--HYIADANCGTVIAEPFSQEQLNEVLRK 333
Query: 471 LVSDKQL 477
++ L
Sbjct: 334 ALTQSPL 340
>pdb|1RZU|A Chain A, Crystal Structure Of The Glycogen Synthase From A.
Tumefaciens In Complex With Adp
pdb|1RZU|B Chain B, Crystal Structure Of The Glycogen Synthase From A.
Tumefaciens In Complex With Adp
Length = 485
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 45/107 (42%), Gaps = 14/107 (13%)
Query: 412 FINPAFIEPFGLTLIEAAAYGLPIVATKNGGPVDI-----HRVLDN----GLLVDPHDQQ 462
I P+ EP GLT + A YG V + GG D H L + G+ P
Sbjct: 369 IIIPSRFEPCGLTQLYALRYGCIPVVARTGGLADTVIDANHAALASKAATGVQFSPVTLD 428
Query: 463 SIADALLKLV---SDKQLWERCRQNGLKNIHQFSWPEHCKSYLSRIS 506
+ A+ + V D +LW + ++ G+K+ SW + Y + S
Sbjct: 429 GLKQAIRRTVRYYHDPKLWTQMQKLGMKS--DVSWEKSAGLYAALYS 473
>pdb|4IR8|A Chain A, 1.85 Angstrom Crystal Structure Of Putative
Sedoheptulose-1,7 Bisphosphatase From Toxoplasma Gondii
pdb|4IR8|B Chain B, 1.85 Angstrom Crystal Structure Of Putative
Sedoheptulose-1,7 Bisphosphatase From Toxoplasma Gondii
Length = 347
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 389 YPKHHKQSDVPDIYRLAAKTKGVFINPA 416
Y + VPD+Y++ K +GVF NPA
Sbjct: 251 YTLRYTGGLVPDVYQIFVKQQGVFCNPA 278
>pdb|3MWF|A Chain A, Crystal Structure Of Staphylococcus Aureus Sira Complexed
With Staphyloferrin B
Length = 298
Score = 30.8 bits (68), Expect = 3.3, Method: Composition-based stats.
Identities = 30/96 (31%), Positives = 44/96 (45%), Gaps = 9/96 (9%)
Query: 306 EIMHFFSNPRKPMILA----LARPDPKKNITTLVKAF-GECRPLRELANLTLIMGNR--D 358
+I+ S P++ A + + DP LVK E +E NL + N+ D
Sbjct: 205 DIIQLTSKESIPLMNADHIFVVKSDPNAKDAALVKKTESEWTSSKEWKNLDAVKNNQVSD 264
Query: 359 DIDEMSGTNAALLLSILKLIDKYDLYGQVAYPKHHK 394
D+DE++ A S LKLID DLY ++ K K
Sbjct: 265 DLDEITWNLAGGYKSSLKLID--DLYEKLNIEKQSK 298
>pdb|2XA1|A Chain A, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshii (Seleno Derivative)
pdb|2XA1|B Chain B, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshii (Seleno Derivative)
Length = 416
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 44/205 (21%), Positives = 86/205 (41%), Gaps = 21/205 (10%)
Query: 310 FFSNPRKPMILALARPDPKKNITTLVKAFGECRPLRELANLTLIMGNRDDIDEMSGTNAA 369
F +P KP+I ++R DP K I +++ + + + ++ + L++ D+ G
Sbjct: 225 FDVDPEKPIITQVSRFDPWKGIFDVIEIYRKVK--EKIPGVQLLLVGVXAHDDPEGW-IY 281
Query: 370 LLLSILKLIDKYDLYGQVAYPKHHKQSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAA 429
++ K+ + YD+ H + + V + + E FGLT+ EA
Sbjct: 282 FEKTLRKIGEDYDVKVLTNLIGVHARE-----VNAFQRASDVILQXSIREGFGLTVTEAX 336
Query: 430 AYGLPIVATKNGGPVDIHRVLD--NGLLVDPHDQQSIADALLKLVS----DKQLWERCRQ 483
G P++ GG +++D G LV D + +L L+ K+ + ++
Sbjct: 337 WKGKPVIGRAVGGIK--FQIVDGETGFLV--RDANEAVEVVLYLLKHPEVSKEXGAKAKE 392
Query: 484 NGLKNIHQFSWPEHCKSYLSRISSC 508
KN F +H + YL ++S
Sbjct: 393 RVRKN---FIITKHXERYLDILNSL 414
>pdb|2NW0|A Chain A, Crystal Structure Of A Lysin
pdb|2NW0|B Chain B, Crystal Structure Of A Lysin
Length = 189
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 28/59 (47%)
Query: 395 QSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAYGLPIVATKNGGPVDIHRVLDNG 453
Q+ + ++YRL AK G+++ E FG I+ +P K P D+ + + G
Sbjct: 103 QAFIDELYRLGAKKVGLYVGHHKYEEFGAAQIKCDFTWIPRYGAKPAYPCDLWQYDEYG 161
>pdb|3VUE|A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I
Catalytic Domain
pdb|3VUF|A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I
Catalytic Domain In Complex With Adp
Length = 536
Score = 30.4 bits (67), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 10/72 (13%)
Query: 411 VFINPAFIEPFGLTLIEAAAYGLPIVATKNGGPVD----------IHRVLDNGLLVDPHD 460
V P+ EP GL ++ YG P GG VD + R+ + +V+P D
Sbjct: 404 VLAVPSRFEPCGLIQLQGMRYGTPCACASTGGLVDTVIEGKTGFHMGRLSVDCKVVEPSD 463
Query: 461 QQSIADALLKLV 472
+ +A L + +
Sbjct: 464 VKKVAATLKRAI 475
>pdb|3HMC|A Chain A, Endolysin From Bacillus Anthracis
Length = 192
Score = 30.4 bits (67), Expect = 4.8, Method: Composition-based stats.
Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 395 QSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAYGLPIV-ATKNGGPVDIHRVLDNG 453
Q+ + ++YRL AK G+++ PFG+ +++ +P K P DI + + G
Sbjct: 107 QAFIDELYRLGAKKVGLYVGHHMYTPFGMANVKSDFVWIPRYGGNKPAYPCDIWQYTETG 166
>pdb|1RZV|A Chain A, Crystal Structure Of The Glycogen Synthase From
Agrobacterium Tumefaciens (Non-Complexed Form)
pdb|1RZV|B Chain B, Crystal Structure Of The Glycogen Synthase From
Agrobacterium Tumefaciens (Non-Complexed Form)
Length = 485
Score = 30.4 bits (67), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 44/107 (41%), Gaps = 14/107 (13%)
Query: 412 FINPAFIEPFGLTLIEAAAYGLPIVATKNGGPVDI-----HRVLDN----GLLVDPHDQQ 462
I P+ EP GLT + A YG V + GG D H L + G+ P
Sbjct: 369 IIIPSRFEPCGLTQLYALRYGCIPVVARTGGLADTVIDANHAALASKAATGVQFSPVTLD 428
Query: 463 SIADALLKLV---SDKQLWERCRQNGLKNIHQFSWPEHCKSYLSRIS 506
+ A+ + V D +LW + ++ G K+ SW + Y + S
Sbjct: 429 GLKQAIRRTVRYYHDPKLWTQXQKLGXKS--DVSWEKSAGLYAALYS 473
>pdb|3MWG|A Chain A, Crystal Structure Of Staphylococcus Aureus Sira
pdb|3MWG|B Chain B, Crystal Structure Of Staphylococcus Aureus Sira
Length = 279
Score = 30.4 bits (67), Expect = 5.1, Method: Composition-based stats.
Identities = 26/76 (34%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
Query: 322 LARPDPKKNITTLVKAF-GECRPLRELANLTLIMGNR--DDIDEMSGTNAALLLSILKLI 378
+ + DP LVK E +E NL + N+ DD+DE++ A S LKLI
Sbjct: 206 VVKSDPNAKDAALVKKTESEWTSSKEWKNLDAVKNNQVSDDLDEITWNLAGGYKSSLKLI 265
Query: 379 DKYDLYGQVAYPKHHK 394
D DLY ++ K K
Sbjct: 266 D--DLYEKLNIEKQSK 279
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,682,053
Number of Sequences: 62578
Number of extensions: 1207364
Number of successful extensions: 2697
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 2658
Number of HSP's gapped (non-prelim): 33
length of query: 895
length of database: 14,973,337
effective HSP length: 108
effective length of query: 787
effective length of database: 8,214,913
effective search space: 6465136531
effective search space used: 6465136531
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)