Query 002665
Match_columns 895
No_of_seqs 486 out of 4123
Neff 8.6
Searched_HMMs 29240
Date Tue Mar 26 17:06:27 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002665.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1384-1388//hhsearch_pdb/002665hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3s28_A Sucrose synthase 1; gly 1.0 1 1 460.8 39.1 459 5-509 277-770 (816)
2 2r60_A Glycosyl transferase, g 1.0 1 1 375.2 36.2 444 5-514 6-465 (499)
3 3fro_A GLGA glycogen synthase; 1.0 1 1 352.2 33.0 429 5-512 1-434 (439)
4 3c48_A Predicted glycosyltrans 1.0 1 1 348.2 36.8 407 5-513 19-430 (438)
5 3vue_A GBSS-I, granule-bound s 1.0 1 1 334.2 31.4 454 5-511 8-514 (536)
6 1rzu_A Glycogen synthase 1; gl 1.0 1 1 324.9 27.2 435 7-512 1-479 (485)
7 2qzs_A Glycogen synthase; glyc 1.0 1 1 322.3 28.9 439 7-512 1-480 (485)
8 3okp_A GDP-mannose-dependent a 1.0 1 1 314.9 32.6 374 4-513 2-384 (394)
9 2jjm_A Glycosyl transferase, g 1.0 1 1 312.0 34.5 362 29-512 24-389 (394)
10 2iw1_A Lipopolysaccharide core 1.0 1 1 311.2 28.1 369 7-510 1-373 (374)
No 1
>3s28_A Sucrose synthase 1; glycosyltransferase, sucrose metabolism, sugar donar complex rossmann fold, GT-B fold, glycosyltansferase, UDP-glucose; HET: UDP LCN NHF; 2.80A {Arabidopsis thaliana} PDB: 3s27_A* 3s29_A*
Probab=1.00 E-value=1 Score=460.79 Aligned_cols=459 Identities=26% Similarity=0.436 Sum_probs=350.2
Q ss_pred CCEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHH--------HHHHHHCCCCCCEEE----EEECCCCCCCCCCCCCC
Q ss_conf 432899983264333476678898888831468999--------999981599941389----96346458998888786
Q 002665 5 DFNMKYLCSLHGLIRGENMELGRDSDTGGQVKYVVE--------LARALGSMPGVYRVD----LLTRQVSAPDVDWTYAE 72 (895)
Q Consensus 5 ~~~~i~~i~~~~~~~~~~~~~g~~~~~GG~~~~v~~--------La~~L~~~g~~~~V~----iit~~~~~~~~~~~~~~ 72 (895)
+.++|+|||+||++|+.++ +|+ ||||||..||++ |+++|+++| |+|+ |+|+.+.++ ....|++
T Consensus 277 ~~~~i~~is~hg~~~~~~~-lG~-~dtGGq~vyV~e~~~al~~ela~~L~~~G--~~V~~~V~v~Tr~~~~~-~g~~y~~ 351 (816)
T 3s28_A 277 MVFNVVILSPHGYFAQDNV-LGY-PDTGGQVVYILDQVRALEIEMLQRIKQQG--LNIKPRILILTRLLPDA-VGTTCGE 351 (816)
T ss_dssp CCCEEEEECCSSCCCSSSC-TTS-TTCSHHHHHHHHHHHHHHHHHHHHHHHTT--CCCCCEEEEEEECCTTC-TTSSTTS
T ss_pred CEEEEEEECCCCCCCCCCC-CCC-CCCCCCEEEHHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECCCCCC-CCCCCCC
T ss_conf 5248999847766575445-788-88898365099899899999999999779--96200168996898787-7776577
Q ss_pred CCCCCCCCCCHHHHCCCCCCCCCEEEEECCCCC----CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 532345443012110368888819999517999----7652312369881468999999999999985211179999987
Q 002665 73 PSEMLNRKNTENLMQGLGESSGAYIIRIPFGPK----DKYVQKELLWPHIPEFVDAALTHIIQISKVLGEQVGSGQPIWP 148 (895)
Q Consensus 73 ~~e~~~~~~~~~~~~~~~~~~g~~i~r~~~~~~----~~~l~k~~~~~~l~~f~~~~~~~~~~~~~~l~~~~~~~~~~~p 148 (895)
+.+.+ ...+|++|+|+|+++. .+|+.+..+|+++..|....+..+... .+.+|
T Consensus 352 ~~e~i------------~~~~gv~I~RvP~~~~~g~l~~~l~k~~L~~~L~~F~~~~l~~il~~-----------~~~~P 408 (816)
T 3s28_A 352 RLERV------------YDSEYCDILRVPFRTEKGIVRKWISRFEVWPYLETYTEDAAVELSKE-----------LNGKP 408 (816)
T ss_dssp SEEEC------------TTCSSEEEEEECEEETTEEECSCCCTTTCGGGHHHHHHHHHHHHHHH-----------CSSCC
T ss_pred CCEEE------------CCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-----------CCCCC
T ss_conf 51155------------48697599996687766543345657788999999999999999996-----------58997
Q ss_pred CEEEECCCCCHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHH
Q ss_conf 09982468820899997402899999980897142389999708888343455766878689999510136889946989
Q 002665 149 VAIHGHYADAGDAAALLSGALNVPMVFTGHSLGRDKLEQLLKQGRLSRDEINTTYKIMRRIEAEELSLDASEIVITSTRQ 228 (895)
Q Consensus 149 DvIh~h~~~~~~~~~~~~~~~~ip~v~t~H~~~~~~~~~l~~~g~~~~~~~~~~~~~~~r~~~e~~~~~~ad~vi~~s~~ 228 (895)
||||+|++.+++++..+++..++|+|+|.|+++..+... .......+...|++..++.+|..+++.||.||++|+.
T Consensus 409 DVIHsH~~~sglva~llar~~gvP~V~T~Hsl~~~k~~~----~~~~~~~~~~~y~~~~r~~aE~~~l~~AD~VIa~S~~ 484 (816)
T 3s28_A 409 DLIIGNYSDGNLVASLLAHKLGVTQCTIAHALEKTKYPD----SDIYWKKLDDKYHFSCQFTADIFAMNHTDFIITSTFQ 484 (816)
T ss_dssp SEEEEEHHHHHHHHHHHHHHHTCCEEEECSCCHHHHSTT----TTTTHHHHHHHHCHHHHHHHHHHHHHHSSEEEESCHH
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCC----CCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCHH
T ss_conf 399968853899999999975998899981663001222----3301556778888988888999999849999988899
Q ss_pred HHHHH------HHHHCCCC-HHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC--CCC
Q ss_conf 99999------97715998-4789999996832644468889986991999768874468999887543367999--999
Q 002665 229 EIEEQ------WRLYDGFD-PVLERKLRARIKRGVSCHGRFMPRMVVIPPGIEFHHIVRHNGDVDGEVERDEGSP--ASP 299 (895)
Q Consensus 229 ~~~~~------~~~y~~~~-~~~~~~l~~~~~~gv~~~g~~~~~v~vip~Gid~~~f~~~~~~~~~~~~~~~~~~--~~~ 299 (895)
+++.. +..+..+. |. ..+.+...+.+.+++.+||||+|.+.|.|....... .......- ...
T Consensus 485 ~~~~l~~~~~~y~~~~~~~~p~--------Lyr~~~gI~~~~~ki~VIpnGVD~~~F~P~~~~~~R-l~~~~~~i~~~l~ 555 (816)
T 3s28_A 485 EIAGSKETVGQYESHTAFTLPG--------LYRVVHGIDVFDPKFNIVSPGADMSIYFPYTEEKRR-LTKFHSEIEELLY 555 (816)
T ss_dssp HHHCCSSSCCTTGGGSSEEETT--------TEEEEESCCTTCTTEEECCCCCCTTTSCCTTCTTTC-CGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCH--------HHHCCCCCCCCCCCEEEECCCCCHHHCCCCCHHHHH-HHHCCCCCCCCCC
T ss_conf 9999998887764420135411--------221012244677887998897478872863103554-3200232000124
Q ss_pred CCCHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 99605654101589998699997189998898999999984213348983999980699920221113999999999997
Q 002665 300 DPPIWSEIMHFFSNPRKPMILALARPDPKKNITTLVKAFGECRPLRELANLTLIMGNRDDIDEMSGTNAALLLSILKLID 379 (895)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~Il~vgrl~~~Kgi~~ll~A~~~l~~~~~~~~l~livG~~~~~~~l~~~~~~~~~~i~~~~~ 379 (895)
.+........+...+++++|+++||+++.||++.+++|+..+.+..+..++ +++|++++......+..+....+..+++
T Consensus 556 ~p~~~r~~lg~l~~~~~~vIl~vGRl~~~KGid~LIeA~~~L~~~~~~v~L-vIvG~g~~~~~~~~e~~~~~~~L~~li~ 634 (816)
T 3s28_A 556 SDVENKEHLCVLKDKKKPILFTMARLDRVKNLSGLVEWYGKNTRLRELANL-VVVGGDRRKESKDNEEKAEMKKMYDLIE 634 (816)
T ss_dssp CSCCBTTEESCBSCTTSCEEEEECCCCTTTTHHHHHHHHHHCHHHHHHCEE-EEECCCTTSCCCCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEE-EEEECCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 605677774445789983999974472217999999999997855799699-9996887533343356999999999999
Q ss_pred HCCCCCCEEECCCCCC----CCHHHHHH-HHHCCCCEEEECCCCCCCCHHHHHHHHCCCCEEECCCCCCCCCCCCCCCEE
Q ss_conf 7199997882999998----96999999-702189599924998998968999999299899838877311101288629
Q 002665 380 KYDLYGQVAYPKHHKQ----SDVPDIYR-LAAKTKGVFINPAFIEPFGLTLIEAAAYGLPIVATKNGGPVDIHRVLDNGL 454 (895)
Q Consensus 380 ~~~l~~~v~~~g~~~~----~el~~ly~-~a~~~~Dv~v~ps~~Eg~gl~~~Ea~a~G~PVIat~~gg~~eii~~~~~g~ 454 (895)
++++.++|.|+|+++. +++..+|. .| |++|+||..|+||++++||||||+|||+++.||..|++.++.+|+
T Consensus 635 ~lgL~~~V~flG~~~~~v~~~eL~~~~~~aa----DvfV~PS~~EgfglvllEAMA~G~PVIasd~GG~~EiV~dg~~Gl 710 (816)
T 3s28_A 635 EYKLNGQFRWISSQMDRVRNGELYRYICDTK----GAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVHGKSGF 710 (816)
T ss_dssp HTTCBBBEEEECCCCCHHHHHHHHHHHHHTT----CEEEECCSCBSSCHHHHHHHHTTCCEEEESSBTHHHHCCBTTTBE
T ss_pred HCCCCCCEEECCCCCCCCCHHHHHHHHHHCC----EEEEECCCCCCCCHHHHHHHHCCCCEEEECCCCHHHHHCCCCCEE
T ss_conf 7499872898167556689999999999569----099988875576499999998099999968987699970698189
Q ss_pred EECCCCHHHHHHHHHHHH----HCHHHHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHH
Q ss_conf 809999999999999986----29999999999998998-60998999999999999724
Q 002665 455 LVDPHDQQSIADALLKLV----SDKQLWERCRQNGLKNI-HQFSWPEHCKSYLSRISSCK 509 (895)
Q Consensus 455 lv~p~d~~~la~aI~~ll----~~~~~~~~~~~~~~~~v-~~~s~~~~a~~~~~~l~~~~ 509 (895)
+++|.|+++++++|.+++ .+++.++++++++++.+ ++|||+.++++++++|+...
T Consensus 711 lv~p~D~e~LA~aI~~lL~~Ll~d~~~~~~m~~~ar~~a~~~fSwe~~a~~ll~lY~~~g 770 (816)
T 3s28_A 711 HIDPYHGDQAADTLADFFTKCKEDPSHWDEISKGGLQRIEEKYTWQIYSQRLLTLTGVYG 770 (816)
T ss_dssp EECTTSHHHHHHHHHHHHHHHHHCTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHH
T ss_pred EECCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_conf 968999999999999999875269999999999999999986899999999999999976
No 2
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Probab=1.00 E-value=1 Score=375.16 Aligned_cols=444 Identities=32% Similarity=0.505 Sum_probs=323.0
Q ss_pred CCEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 43289998326433347667889888883146899999998159994138996346458998888786532345443012
Q 002665 5 DFNMKYLCSLHGLIRGENMELGRDSDTGGQVKYVVELARALGSMPGVYRVDLLTRQVSAPDVDWTYAEPSEMLNRKNTEN 84 (895)
Q Consensus 5 ~~~~i~~i~~~~~~~~~~~~~g~~~~~GG~~~~v~~La~~L~~~g~~~~V~iit~~~~~~~~~~~~~~~~e~~~~~~~~~ 84 (895)
+.|+|++++.++...++++.+...+..||+++++.+|+++|+++| |+|+|+|.....+.. ..|....+.+
T Consensus 6 ~~MkIl~i~~~~~P~~~~l~v~~~~~~GG~~~~~~~la~~L~~~G--~~V~v~~~~~~~~~~-~~~~~~~~~~------- 75 (499)
T 2r60_A 6 RIKHVAFLNPQGNFDPADSYWTEHPDFGGQLVYVKEVSLALAEMG--VQVDIITRRIKDENW-PEFSGEIDYY------- 75 (499)
T ss_dssp -CCEEEEECCSSCCCTTCTTTTSBTTBSHHHHHHHHHHHHHHHTT--CEEEEEEECCCBTTB-GGGCCSEEEC-------
T ss_pred CCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHCC--CEEEEEECCCCCCCC-CCHHHHHHHC-------
T ss_conf 452499996577744344234788887994334999999998559--848999578872336-5113567750-------
Q ss_pred HHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCHHHHHH
Q ss_conf 11036888881999951799976523123698814689999999999999852111799999870998246882089999
Q 002665 85 LMQGLGESSGAYIIRIPFGPKDKYVQKELLWPHIPEFVDAALTHIIQISKVLGEQVGSGQPIWPVAIHGHYADAGDAAAL 164 (895)
Q Consensus 85 ~~~~~~~~~g~~i~r~~~~~~~~~l~k~~~~~~l~~f~~~~~~~~~~~~~~l~~~~~~~~~~~pDvIh~h~~~~~~~~~~ 164 (895)
...+|+++++++..+. .+..+..+|.++..+...+.+.+++. ..+|||||+|.+..+.++..
T Consensus 76 -----~~~~gv~v~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~l~~~------------~~~~Divh~~~~~~~~~~~~ 137 (499)
T 2r60_A 76 -----QETNKVRIVRIPFGGD-KFLPKEELWPYLHEYVNKIINFYREE------------GKFPQVVTTHYGDGGLAGVL 137 (499)
T ss_dssp -----TTCSSEEEEEECCSCS-SCCCGGGCGGGHHHHHHHHHHHHHHH------------TCCCSEEEEEHHHHHHHHHH
T ss_pred -----CCCCCEEEEEECCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHC------------CCCCCEEEECCCCCHHHHHH
T ss_conf -----6789817998257776-77688999998999999999999853------------89988899757862079999
Q ss_pred HHCCCCCCEEEEECCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHH--HCCC--
Q ss_conf 740289999998089714238999970888834345576687868999951013688994698999999977--1599--
Q 002665 165 LSGALNVPMVFTGHSLGRDKLEQLLKQGRLSRDEINTTYKIMRRIEAEELSLDASEIVITSTRQEIEEQWRL--YDGF-- 240 (895)
Q Consensus 165 ~~~~~~ip~v~t~H~~~~~~~~~l~~~g~~~~~~~~~~~~~~~r~~~e~~~~~~ad~vi~~s~~~~~~~~~~--y~~~-- 240 (895)
+++..++|+|++.|+.+......+...+. ....+...+++..+...+...++.+|.++++|+...+.+... |+..
T Consensus 138 ~~~~~~~p~v~~~H~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~g~~~~ 216 (499)
T 2r60_A 138 LKNIKGLPFTFTGHSLGAQKMEKLNVNTS-NFKEMDERFKFHRRIIAERLTMSYADKIIVSTSQERFGQYSHDLYRGAVN 216 (499)
T ss_dssp HHHHHCCCEEEECSSCHHHHHHTTCCCST-TSHHHHHHHCHHHHHHHHHHHHHHCSEEEESSHHHHHHTTTSGGGTTTCC
T ss_pred HHHHCCCCEEEECCCCCCCCCHHHCCCCC-CCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHCCCCCCC
T ss_conf 88735996899806840011134414787-76124556788899999999984689999888899999986412464223
Q ss_pred --CHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCC-----CC
Q ss_conf --84789999996832644468889986991999768874468999887543367999999996056541015-----89
Q 002665 241 --DPVLERKLRARIKRGVSCHGRFMPRMVVIPPGIEFHHIVRHNGDVDGEVERDEGSPASPDPPIWSEIMHFF-----SN 313 (895)
Q Consensus 241 --~~~~~~~l~~~~~~gv~~~g~~~~~v~vip~Gid~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~ 313 (895)
.+. ++.+||||+|...|.+.... ......+.++. ..
T Consensus 217 ~~~~~---------------------ki~vi~ngvd~~~~~~~~~~----------------~~~~~~r~~~~~~~~~~~ 259 (499)
T 2r60_A 217 VEDDD---------------------KFSVIPPGVNTRVFDGEYGD----------------KIKAKITKYLERDLGSER 259 (499)
T ss_dssp TTCGG---------------------GEEECCCCBCTTTSSSCCCH----------------HHHHHHHHHHHHHSCGGG
T ss_pred CCCCC---------------------CEEEECCCCCHHHCCCCCHH----------------HHHHHHHHHHCCCCCCCC
T ss_conf 46788---------------------76998799586656864103----------------567899988364334568
Q ss_pred CCCCEEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEECCCCC----HHHHHHHHHHHHHHHHHHHHCCCCCCEEE
Q ss_conf 99869999718999889899999998421334898399998069992----02211139999999999977199997882
Q 002665 314 PRKPMILALARPDPKKNITTLVKAFGECRPLRELANLTLIMGNRDDI----DEMSGTNAALLLSILKLIDKYDLYGQVAY 389 (895)
Q Consensus 314 ~~~~~Il~vgrl~~~Kgi~~ll~A~~~l~~~~~~~~l~livG~~~~~----~~l~~~~~~~~~~i~~~~~~~~l~~~v~~ 389 (895)
++.++|+++||+.+.||++.+++|+..+.+..+.....+++|+.+.. ..+.....++..++..++.++++.++|.|
T Consensus 260 ~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~~~~l~i~G~~~~~~~~y~~l~~~~~~y~~~l~~~~~~~~l~~~V~~ 339 (499)
T 2r60_A 260 MELPAIIASSRLDQKKNHYGLVEAYVQNKELQDKANLVLTLRGIENPFEDYSRAGQEEKEILGKIIELIDNNDCRGKVSM 339 (499)
T ss_dssp TTSCEEEECSCCCGGGCHHHHHHHHHTCHHHHHHCEEEEEESSCSBTTTBCTTSCHHHHHHHHHHHHHHHHTTCBTTEEE
T ss_pred CCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 88768999606850158899999999998738886599998788875322111132014799999999986499860998
Q ss_pred CCCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHCCCCEEECCCCCCCCCCCCCCCEEEECCCCHHHHHHHHH
Q ss_conf 99999896999999702189599924998998968999999299899838877311101288629809999999999999
Q 002665 390 PKHHKQSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAYGLPIVATKNGGPVDIHRVLDNGLLVDPHDQQSIADALL 469 (895)
Q Consensus 390 ~g~~~~~el~~ly~~a~~~~Dv~v~ps~~Eg~gl~~~Ea~a~G~PVIat~~gg~~eii~~~~~g~lv~p~d~~~la~aI~ 469 (895)
.|+++.+++..+|+.|..+.|++|+||..||||++++|||+||+|||+++.||..|++.++.+|+++++.|+++++++|.
T Consensus 340 ~G~v~~~~~~~~~~~a~~~~dv~v~pS~~Eg~~~~~lEAma~G~PvI~s~~~g~~e~v~~~~~g~l~~~~d~~~la~~i~ 419 (499)
T 2r60_A 340 FPLNSQQELAGCYAYLASKGSVFALTSFYEPFGLAPVEAMASGLPAVVTRNGGPAEILDGGKYGVLVDPEDPEDIARGLL 419 (499)
T ss_dssp EECCSHHHHHHHHHHHHHTTCEEEECCSCBCCCSHHHHHHHTTCCEEEESSBHHHHHTGGGTSSEEECTTCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHCCCCCCEEEECCCCCCCCCHHHHHHHCCCCEEEECCCCHHHHHCCCCEEEEECCCCHHHHHHHHH
T ss_conf 78899899999999557679889978645897968999997699889816887788734786079958999999999999
Q ss_pred HHHHCHHHHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 986299999999999989986-099899999999999972411998
Q 002665 470 KLVSDKQLWERCRQNGLKNIH-QFSWPEHCKSYLSRISSCKQRQPR 514 (895)
Q Consensus 470 ~ll~~~~~~~~~~~~~~~~v~-~~s~~~~a~~~~~~l~~~~~~~~~ 514 (895)
+++++++.+.++++++++.++ +|+|+.+++++.++|+++..+...
T Consensus 420 ~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~y~~~~~~~~~ 465 (499)
T 2r60_A 420 KAFESEETWSAYQEKGKQRVEERYTWQETARGYLEVIQEIADRKDE 465 (499)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHHSBHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9986999999999999999987579999999999999998732133
No 3
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=1.00 E-value=1 Score=352.20 Aligned_cols=429 Identities=21% Similarity=0.263 Sum_probs=304.7
Q ss_pred CCEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 43289998326433347667889888883146899999998159994138996346458998888786532345443012
Q 002665 5 DFNMKYLCSLHGLIRGENMELGRDSDTGGQVKYVVELARALGSMPGVYRVDLLTRQVSAPDVDWTYAEPSEMLNRKNTEN 84 (895)
Q Consensus 5 ~~~~i~~i~~~~~~~~~~~~~g~~~~~GG~~~~v~~La~~L~~~g~~~~V~iit~~~~~~~~~~~~~~~~e~~~~~~~~~ 84 (895)
.+|+|++++.+.. ++..||.++++.+|+++|+++| |+|+++|....... ...-.....++....
T Consensus 1 r~MkIl~v~~~~~----------p~~~gG~~~~~~~la~~L~~~G--~~V~v~~~~~~~~~--~~~~~~~~~~~~~~~-- 64 (439)
T 3fro_A 1 RHMKVLLLGFEFL----------PVKVGGLAEALTAISEALASLG--HEVLVFTPSHGRFQ--GEEIGKIRVFGEEVQ-- 64 (439)
T ss_dssp CCCEEEEECSCCT----------TSCSSSHHHHHHHHHHHHHHTT--CEEEEEEECTTCSC--CEEEEEEEETTEEEE--
T ss_pred CCEEEEEEECCCC----------CCCCCCHHHHHHHHHHHHHHCC--CEEEEEECCCCCCH--HHHHCCCCCCCCCCC--
T ss_conf 9528999950217----------7666889999999999999779--85999836778823--655246301476531--
Q ss_pred HHCCCCCCCCCEEEEECCCCCCCCCCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCHHHHH
Q ss_conf 11036888881999951799976523123698-81468999999999999985211179999987099824688208999
Q 002665 85 LMQGLGESSGAYIIRIPFGPKDKYVQKELLWP-HIPEFVDAALTHIIQISKVLGEQVGSGQPIWPVAIHGHYADAGDAAA 163 (895)
Q Consensus 85 ~~~~~~~~~g~~i~r~~~~~~~~~l~k~~~~~-~l~~f~~~~~~~~~~~~~~l~~~~~~~~~~~pDvIh~h~~~~~~~~~ 163 (895)
.....+..+|+++++++. .+..+..++. +...+...+..+.....+.+...+.. ..+||+||+|.+..+.++.
T Consensus 65 ~~~~~~~~~gv~v~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~Dii~~~~~~~~~~~~ 138 (439)
T 3fro_A 65 VKVSYEERGNLRIYRIGG----GLLDSEDVYGPGWDGLIRKAVTFGRASVLLLNDLLRE--EPLPDVVHFHDWHTVFAGA 138 (439)
T ss_dssp EEEEEEEETTEEEEEEES----GGGGCSSTTCSHHHHHHHHHHHHHHHHHHHHHHHTTT--SCCCSEEEEESGGGHHHHH
T ss_pred EEEEECCCCCCEEEEECC----HHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC--CCCCEEEEECCHHHHHHHH
T ss_conf 024312578840899353----2205212466776300232578999999999997444--7998199946403434589
Q ss_pred HHHCCCCCCEEEEECCCCHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHCCCCH
Q ss_conf 974028999999808971423899-9970888834345576687868999951013688994698999999977159984
Q 002665 164 LLSGALNVPMVFTGHSLGRDKLEQ-LLKQGRLSRDEINTTYKIMRRIEAEELSLDASEIVITSTRQEIEEQWRLYDGFDP 242 (895)
Q Consensus 164 ~~~~~~~ip~v~t~H~~~~~~~~~-l~~~g~~~~~~~~~~~~~~~r~~~e~~~~~~ad~vi~~s~~~~~~~~~~y~~~~~ 242 (895)
.+++..++|+|++.|+.+...... ......+... ........+...++.+|.++++|+...+..++.++...
T Consensus 139 ~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~ad~ii~~S~~~~~~~~~~~~~~~- 211 (439)
T 3fro_A 139 LIKKYFKIPAVFTIHRLNKSKLPAFYFHEAGLSEL------APYPDIDPEHTGGYIADIVTTVSRGYLIDEWGFFRNFE- 211 (439)
T ss_dssp HHHHHHCCCEEEEESCCCCCCEEHHHHHHTTCGGG------CCSSEECHHHHHHHHCSEEEESCHHHHHHTHHHHGGGT-
T ss_pred HHHHCCCCCEEEEECCCCCCCCCHHHHCCCCCCCC------CCCCEEEHHHHHHHHCCEEEECCHHHHHHHHHHHHHCC-
T ss_conf 88652699789996534445685677474551003------56663207666554345887268989999860565047-
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEE
Q ss_conf 78999999683264446888998699199976887446899988754336799999999605654101589998699997
Q 002665 243 VLERKLRARIKRGVSCHGRFMPRMVVIPPGIEFHHIVRHNGDVDGEVERDEGSPASPDPPIWSEIMHFFSNPRKPMILAL 322 (895)
Q Consensus 243 ~~~~~l~~~~~~gv~~~g~~~~~v~vip~Gid~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Il~v 322 (895)
.++.+||||+|.+.|.+...... .........+++..+++ ++|+++
T Consensus 212 ---------------------~~i~vi~ngvd~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~-~~i~~~ 257 (439)
T 3fro_A 212 ---------------------GKITYVFNGIDCSFWNESYLTGS------------RDERKKSLLSKFGMDEG-VTFMFI 257 (439)
T ss_dssp ---------------------TSEEECCCCCCTTTSCGGGSCSC------------HHHHHHHHHHHHTCCSC-EEEEEE
T ss_pred ---------------------CCEEECCCCCCCHHCCCCCCCCH------------HHHHHHHHHHHCCCCCC-CEEEEE
T ss_conf ---------------------73453478888043084322110------------45669999997399998-479997
Q ss_pred ECCC-CCCCHHHHHHHHHHCCCCCCCCCEEE-EEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCHHH
Q ss_conf 1899-98898999999984213348983999-980699920221113999999999997719999788299999896999
Q 002665 323 ARPD-PKKNITTLVKAFGECRPLRELANLTL-IMGNRDDIDEMSGTNAALLLSILKLIDKYDLYGQVAYPKHHKQSDVPD 400 (895)
Q Consensus 323 grl~-~~Kgi~~ll~A~~~l~~~~~~~~l~l-ivG~~~~~~~l~~~~~~~~~~i~~~~~~~~l~~~v~~~g~~~~~el~~ 400 (895)
||+. +.||++.+++|+..+......+++.+ ++|+++. .+...+..++.+++ +++.|.|+++.+++..
T Consensus 258 G~~~~~~Kg~~~li~a~~~l~~~~~~~~~~l~i~G~g~~---------~~~~~l~~~~~~~~--~~~~~~g~~~~~~~~~ 326 (439)
T 3fro_A 258 GRFDRGQKGVDVLLKAIEILSSKKEFQEMRFIIIGKGDP---------ELEGWARSLEEKHG--NVKVITEMLSREFVRE 326 (439)
T ss_dssp CCSSCTTBCHHHHHHHHHHHHTSGGGGGEEEEEECCCCH---------HHHHHHHHHHHHCT--TEEEECSCCCHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCH---------HHHHHHHHHHHHCC--CEEEECCCCCHHHHHH
T ss_conf 333534366999999999998546678718999807972---------67789999875069--8999728799889999
Q ss_pred HHHHHHCCCCEEEECCCCCCCCHHHHHHHHCCCCEEECCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHH-CHHHHH
Q ss_conf 9997021895999249989989689999992998998388773111012886298099999999999999862-999999
Q 002665 401 IYRLAAKTKGVFINPAFIEPFGLTLIEAAAYGLPIVATKNGGPVDIHRVLDNGLLVDPHDQQSIADALLKLVS-DKQLWE 479 (895)
Q Consensus 401 ly~~a~~~~Dv~v~ps~~Eg~gl~~~Ea~a~G~PVIat~~gg~~eii~~~~~g~lv~p~d~~~la~aI~~ll~-~~~~~~ 479 (895)
+|+.| |++|+||..||||++++||||||+|||+++.|+..|++.++ +|+++++.|+++++++|.++++ +++.++
T Consensus 327 ~~~~a----dv~v~ps~~e~~~~~~~EAma~G~Pvi~s~~~~~~e~~~~~-~g~~~~~~d~~~la~~i~~ll~~~~~~~~ 401 (439)
T 3fro_A 327 LYGSV----DFVIIPSYFEPFGLVALEAMCLGAIPIASAVGGLRDIITNE-TGILVKAGDPGELANAILKALELSRSDLS 401 (439)
T ss_dssp HHTTC----SEEEECBSCCSSCHHHHHHHHTTCEEEEESSTHHHHHCCTT-TCEEECTTCHHHHHHHHHHHHHHTTTTTH
T ss_pred HHHHC----CEEEECCCCCCCCHHHHHHHHCCCCEEECCCCCCCEEEECC-CEEEECCCCHHHHHHHHHHHHHCCHHHHH
T ss_conf 99977----99995898788618999999779976973788743168758-44896889989999999999831999999
Q ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCC
Q ss_conf 999999899860998999999999999724119
Q 002665 480 RCRQNGLKNIHQFSWPEHCKSYLSRISSCKQRQ 512 (895)
Q Consensus 480 ~~~~~~~~~v~~~s~~~~a~~~~~~l~~~~~~~ 512 (895)
++++++++.+++|+|+.++++|.++|+++.++.
T Consensus 402 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 434 (439)
T 3fro_A 402 KFRENCKKRAMSFSWEKSAERYVKAYTGSIDRA 434 (439)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHTCSCCB
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
T ss_conf 999999998764729999999999999999754
No 4
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=1.00 E-value=1 Score=348.21 Aligned_cols=407 Identities=23% Similarity=0.316 Sum_probs=301.2
Q ss_pred CCEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 43289998326433347667889888883146899999998159994138996346458998888786532345443012
Q 002665 5 DFNMKYLCSLHGLIRGENMELGRDSDTGGQVKYVVELARALGSMPGVYRVDLLTRQVSAPDVDWTYAEPSEMLNRKNTEN 84 (895)
Q Consensus 5 ~~~~i~~i~~~~~~~~~~~~~g~~~~~GG~~~~v~~La~~L~~~g~~~~V~iit~~~~~~~~~~~~~~~~e~~~~~~~~~ 84 (895)
..|||++++.+.. +.........||.++++.+|+++|+++| |+|+++|...... ....+..
T Consensus 19 ~mmkIl~i~~~~~----p~~~~~~~~~GG~~~~~~~la~~L~~~G--~~V~v~~~~~~~~------~~~~~~~------- 79 (438)
T 3c48_A 19 SHMRVAMISMHTS----PLQQPGTGDSGGMNVYILSTATELAKQG--IEVDIYTRATRPS------QGEIVRV------- 79 (438)
T ss_dssp CCCEEEEECTTSC----TTCC-------CHHHHHHHHHHHHHHTT--CEEEEEEECCCGG------GCSEEEE-------
T ss_pred CHHEEEEEEEECC----CCCCCCCCCCCCHHHHHHHHHHHHHHCC--CEEEEEECCCCCC------CCCCCCC-------
T ss_conf 0203345775325----6346787887879999999999999669--9799995478877------7540025-------
Q ss_pred HHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCHHHHHH
Q ss_conf 11036888881999951799976523123698814689999999999999852111799999870998246882089999
Q 002665 85 LMQGLGESSGAYIIRIPFGPKDKYVQKELLWPHIPEFVDAALTHIIQISKVLGEQVGSGQPIWPVAIHGHYADAGDAAAL 164 (895)
Q Consensus 85 ~~~~~~~~~g~~i~r~~~~~~~~~l~k~~~~~~l~~f~~~~~~~~~~~~~~l~~~~~~~~~~~pDvIh~h~~~~~~~~~~ 164 (895)
.+++++++++..+. ....+..++..+..|...+++.. +.. ..+||+||+|.+..+.++..
T Consensus 80 -------~~~v~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~------~~~------~~~~Div~~~~~~~~~~~~~ 139 (438)
T 3c48_A 80 -------AENLRVINIAAGPY-EGLSKEELPTQLAAFTGGMLSFT------RRE------KVTYDLIHSHYWLSGQVGWL 139 (438)
T ss_dssp -------ETTEEEEEECCSCS-SSCCGGGGGGGHHHHHHHHHHHH------HHH------TCCCSEEEEEHHHHHHHHHH
T ss_pred -------CCCEEEEEECCCCC-CCCCHHHHHHHHHHHHHHHHHHH------HHC------CCCCCEEEECCCCHHHHHHH
T ss_conf -------68748999247875-43236677899999999999999------841------68999899477557899999
Q ss_pred HHCCCCCCEEEEECCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHCCCCHHH
Q ss_conf 74028999999808971423899997088883434557668786899995101368899469899999997715998478
Q 002665 165 LSGALNVPMVFTGHSLGRDKLEQLLKQGRLSRDEINTTYKIMRRIEAEELSLDASEIVITSTRQEIEEQWRLYDGFDPVL 244 (895)
Q Consensus 165 ~~~~~~ip~v~t~H~~~~~~~~~l~~~g~~~~~~~~~~~~~~~r~~~e~~~~~~ad~vi~~s~~~~~~~~~~y~~~~~~~ 244 (895)
+++..++|+|++.|+.+......+.. +. . .. . ..+...+...++.+|.++++|+...+.+...|+. .+.
T Consensus 140 ~~~~~~~p~v~~~h~~~~~~~~~~~~-~~-~---~~--~--~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~g~-~~~- 208 (438)
T 3c48_A 140 LRDLWRIPLIHTAHTLAAVKNSYRDD-SD-T---PE--S--EARRICEQQLVDNADVLAVNTQEEMQDLMHHYDA-DPD- 208 (438)
T ss_dssp HHHHHTCCEEEECSSCHHHHSCC-----C-C---HH--H--HHHHHHHHHHHHHCSEEEESSHHHHHHHHHHHCC-CGG-
T ss_pred HHHHCCCCEEEEECCCCCCCCCCCCC-CC-C---CC--H--HHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHCC-CHH-
T ss_conf 99974999899942774011111002-67-7---31--5--7899999999840899998479999999998589-820-
Q ss_pred HHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEEEC
Q ss_conf 99999968326444688899869919997688744689998875433679999999960565410158999869999718
Q 002665 245 ERKLRARIKRGVSCHGRFMPRMVVIPPGIEFHHIVRHNGDVDGEVERDEGSPASPDPPIWSEIMHFFSNPRKPMILALAR 324 (895)
Q Consensus 245 ~~~l~~~~~~gv~~~g~~~~~v~vip~Gid~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Il~vgr 324 (895)
++.+||||+|...|.+.... .......++...++.++|+++||
T Consensus 209 --------------------k~~vi~ngvd~~~~~~~~~~-----------------~~~~~r~~~~~~~~~~~i~~~G~ 251 (438)
T 3c48_A 209 --------------------RISVVSPGADVELYSPGNDR-----------------ATERSRRELGIPLHTKVVAFVGR 251 (438)
T ss_dssp --------------------GEEECCCCCCTTTSCCC---------------------CHHHHHHTTCCSSSEEEEEESC
T ss_pred --------------------HEEEECCCCCCCCCCCCCCC-----------------HHHHHHHHCCCCCCCCEEEEEEE
T ss_conf --------------------26882697661104786620-----------------24566886089989848999743
Q ss_pred CCCCCCHHHHHHHHHHCCCCCCCCCEEE-EEEC----CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCHH
Q ss_conf 9998898999999984213348983999-9806----9992022111399999999999771999978829999989699
Q 002665 325 PDPKKNITTLVKAFGECRPLRELANLTL-IMGN----RDDIDEMSGTNAALLLSILKLIDKYDLYGQVAYPKHHKQSDVP 399 (895)
Q Consensus 325 l~~~Kgi~~ll~A~~~l~~~~~~~~l~l-ivG~----~~~~~~l~~~~~~~~~~i~~~~~~~~l~~~v~~~g~~~~~el~ 399 (895)
+.+.||++.+++|+..+.+..+..++.+ ++|+ ++. ...+..++.++++.++|.|.|+++.+++.
T Consensus 252 ~~~~Kg~~~li~a~~~l~~~~p~~~~~l~i~G~~~~~g~~-----------~~~l~~~~~~~~l~~~v~~~g~~~~~~~~ 320 (438)
T 3c48_A 252 LQPFKGPQVLIKAVAALFDRDPDRNLRVIICGGPSGPNAT-----------PDTYRHMAEELGVEKRIRFLDPRPPSELV 320 (438)
T ss_dssp BSGGGCHHHHHHHHHHHHHHCTTCSEEEEEECCBC-----------------CHHHHHHHHTTCTTTEEEECCCCHHHHH
T ss_pred ECCCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCH-----------HHHHHHHHHHCCCCCCEEECCCCCHHHHH
T ss_conf 1566798999999999996397766699998188877727-----------89999999971987868985889858899
Q ss_pred HHHHHHHCCCCEEEECCCCCCCCHHHHHHHHCCCCEEECCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHCHHHHH
Q ss_conf 99997021895999249989989689999992998998388773111012886298099999999999999862999999
Q 002665 400 DIYRLAAKTKGVFINPAFIEPFGLTLIEAAAYGLPIVATKNGGPVDIHRVLDNGLLVDPHDQQSIADALLKLVSDKQLWE 479 (895)
Q Consensus 400 ~ly~~a~~~~Dv~v~ps~~Eg~gl~~~Ea~a~G~PVIat~~gg~~eii~~~~~g~lv~p~d~~~la~aI~~ll~~~~~~~ 479 (895)
.+|+.| |++|+||..|+||++++|||+||+|||+++.|+..|++.++.+|+++++.|+++++++|.+++++++.+.
T Consensus 321 ~~~~~a----dv~v~ps~~e~~~~~~~Eama~G~PvI~~~~~~~~e~i~~~~~g~~~~~~d~~~la~~i~~l~~~~~~~~ 396 (438)
T 3c48_A 321 AVYRAA----DIVAVPSFNESFGLVAMEAQASGTPVIAARVGGLPIAVAEGETGLLVDGHSPHAWADALATLLDDDETRI 396 (438)
T ss_dssp HHHHHC----SEEEECCSCCSSCHHHHHHHHTTCCEEEESCTTHHHHSCBTTTEEEESSCCHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHC----CEEEECCCCCCCCHHHHHHHHCCCCEEECCCCCHHHHHHCCCCEEECCCCCHHHHHHHHHHHHCCHHHHH
T ss_conf 999858----9999874026875599999876998896279872577507972798799999999999999975989999
Q ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf 9999998998609989999999999997241199
Q 002665 480 RCRQNGLKNIHQFSWPEHCKSYLSRISSCKQRQP 513 (895)
Q Consensus 480 ~~~~~~~~~v~~~s~~~~a~~~~~~l~~~~~~~~ 513 (895)
++++++++.+++|+|+.+++++.++|+++..+..
T Consensus 397 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 430 (438)
T 3c48_A 397 RMGEDAVEHARTFSWAATAAQLSSLYNDAIANEN 430 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 9999999998857999999999999999863136
No 5
>3vue_A GBSS-I, granule-bound starch synthase 1, chloroplastic/amyloplastic; rossmann fold, glycosyltransferase, transferase; 2.70A {Oryza sativa japonica group} PDB: 3vuf_A*
Probab=1.00 E-value=1 Score=334.18 Aligned_cols=454 Identities=16% Similarity=0.142 Sum_probs=276.2
Q ss_pred CCEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCC-CCCCCC-CC
Q ss_conf 4328999832643334766788988888314689999999815999413899634645899888878653-234544-30
Q 002665 5 DFNMKYLCSLHGLIRGENMELGRDSDTGGQVKYVVELARALGSMPGVYRVDLLTRQVSAPDVDWTYAEPS-EMLNRK-NT 82 (895)
Q Consensus 5 ~~~~i~~i~~~~~~~~~~~~~g~~~~~GG~~~~v~~La~~L~~~g~~~~V~iit~~~~~~~~~~~~~~~~-e~~~~~-~~ 82 (895)
-.|+|+|++-+.. |. ..+||...++..|+++|+++| |+|+|+++.+. .+........ ..+... +.
T Consensus 8 ~~MkIl~vs~E~~----P~-----~K~GGLadvv~~L~~aL~~~G--~~V~Vi~P~Y~--~~~~~~~~~~~~~~~~~~~~ 74 (536)
T 3vue_A 8 HHMNVVFVGAEMA----PW-----SKTGGLGDVLGGLPPAMAANG--HRVMVISPRYD--QYKDAWDTSVVAEIKVADRY 74 (536)
T ss_dssp CCCEEEEECSCBT----TT-----BCSSHHHHHHHHHHHHHHTTT--CEEEEEEECCS--CCTTCEEEEEEEEEEETTEE
T ss_pred CCCEEEEEEEECC----CH-----HCCCCHHHHHHHHHHHHHHCC--CEEEEEECCCH--HHHHHCCCCEEEEEEECCCE
T ss_conf 9738999987243----12-----126769999999999999769--96999904850--22242265168999836833
Q ss_pred HHHHCCCCCCCCCEEEEECCCCCCCCCCCC------CCC--CCCHHHHHHHHHHH---HH---HHHHHHHHC---CCCCC
Q ss_conf 121103688888199995179997652312------369--88146899999999---99---999852111---79999
Q 002665 83 ENLMQGLGESSGAYIIRIPFGPKDKYVQKE------LLW--PHIPEFVDAALTHI---IQ---ISKVLGEQV---GSGQP 145 (895)
Q Consensus 83 ~~~~~~~~~~~g~~i~r~~~~~~~~~l~k~------~~~--~~l~~f~~~~~~~~---~~---~~~~l~~~~---~~~~~ 145 (895)
+..--.-...+|+.++.+..+. +..+. .+. .....+.+...++. +. +.+.+.... .....
T Consensus 75 ~~~~~~~~~~~gv~~y~id~~~---~~~r~~~~~~~~~Y~~~~~~~~~d~~~rf~~f~~a~l~~~~~l~~~~~~~~~~~~ 151 (536)
T 3vue_A 75 ERVRFFHCYKRGVDRVFIDHPS---FLEKVWGKTGEKIYGPDTGVDYKDNQMRFSLLCQAALEAPRILNLNNNPYFKGTY 151 (536)
T ss_dssp EEEEEEECEETTEEEEEEECTT---TTCC------------------CHHHHHHHHHHHHHHHHHHHCCCCCCTTCCSCC
T ss_pred EEEEEEEEEECCCEEEEECCHH---HHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCC
T ss_conf 7899999997895599964755---4123346677866688756766417999999999999999973026530110147
Q ss_pred CCCCEEEECCCCCHHHHHHHHCC-------CCCCEEEEECCCCHHHH---HHHHHHCCCCHHHHHHH--------HHHHH
Q ss_conf 98709982468820899997402-------89999998089714238---99997088883434557--------66878
Q 002665 146 IWPVAIHGHYADAGDAAALLSGA-------LNVPMVFTGHSLGRDKL---EQLLKQGRLSRDEINTT--------YKIMR 207 (895)
Q Consensus 146 ~~pDvIh~h~~~~~~~~~~~~~~-------~~ip~v~t~H~~~~~~~---~~l~~~g~~~~~~~~~~--------~~~~~ 207 (895)
..+||+|+|.|.++.++..++.. .++|+|+|+|++..... ..+...+. ........ .....
T Consensus 152 ~~ddIiH~hDW~t~l~~~~l~~~~~~~~~~~~~~~V~TiHnl~~qg~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 230 (536)
T 3vue_A 152 GEDVVFVCNDWHTGPLASYLKNNYQPNGIYRNAKVAFCIHNISYQGRFAFEDYPELNL-SERFRSSFDFIDGYDTPVEGR 230 (536)
T ss_dssp CSCEEEEEESGGGSTHHHHHHHHTTTTTSSTTCEEEEEESCTTCCCEEEGGGGGGGCC-CGGGHHHHEEEETTTSTTCEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHCCC-CHHHCCHHHHHHCCCCCCCCC
T ss_conf 9987999776048999999998640233202563454215742245555333644189-656401033331146410033
Q ss_pred HHHHHHHHCCCCCEEEECCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCC
Q ss_conf 68999951013688994698999999977159984789999996832644468889986991999768874468999887
Q 002665 208 RIEAEELSLDASEIVITSTRQEIEEQWRLYDGFDPVLERKLRARIKRGVSCHGRFMPRMVVIPPGIEFHHIVRHNGDVDG 287 (895)
Q Consensus 208 r~~~e~~~~~~ad~vi~~s~~~~~~~~~~y~~~~~~~~~~l~~~~~~gv~~~g~~~~~v~vip~Gid~~~f~~~~~~~~~ 287 (895)
.+..++..+..||.|+|+|+..++++...+.. . .+.+...+ ..++.+||||||++.|.|.......
T Consensus 231 ~~n~~k~~i~~ad~v~tVS~~~a~ei~~~~~~-g------------~~l~~~~~-~~~i~~I~NGiD~~~~~p~~d~~~~ 296 (536)
T 3vue_A 231 KINWMKAGILEADRVLTVSPYYAEELISGIAR-G------------CELDNIMR-LTGITGIVNGMDVSEWDPSKDKYIT 296 (536)
T ss_dssp EEEHHHHHHHHCSEEEESCHHHHHHHHTTCCC-C------------SSSCCCSC-CCSCEECCCCCCTTTSCTTTCSSSS
T ss_pred CHHHHHHHHHHCCEEEECCHHHHHHHHCCCCC-C------------CCCCCCCC-CCCEEEEECCCCHHHCCCCCCCCCC
T ss_conf 04399999985367787687885343126344-5------------22001254-5781899799664214887762100
Q ss_pred CCCCCCCCCCCC-CC-CHHHHHHHCC--CCCCCCEEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEECCCCCHHH
Q ss_conf 543367999999-99-6056541015--8999869999718999889899999998421334898399998069992022
Q 002665 288 EVERDEGSPASP-DP-PIWSEIMHFF--SNPRKPMILALARPDPKKNITTLVKAFGECRPLRELANLTLIMGNRDDIDEM 363 (895)
Q Consensus 288 ~~~~~~~~~~~~-~~-~~~~~~~~~~--~~~~~~~Il~vgrl~~~Kgi~~ll~A~~~l~~~~~~~~l~livG~~~~~~~l 363 (895)
... ....... .. .......+++ ..++.|+|+++||+.++||++.+++|+.++.+ ..+++ +++|.++..
T Consensus 297 ~~~--~~~~~~~~K~~~k~~l~~~~gl~~d~~~p~i~~vgRl~~~Kg~~~li~a~~~l~~--~~~~l-~l~G~G~~~--- 368 (536)
T 3vue_A 297 AKY--DATTAIEAKALNKEALQAEAGLPVDRKIPLIAFIGRLEEQKGPDVMAAAIPELMQ--EDVQI-VLLGTGKKK--- 368 (536)
T ss_dssp CCC--CTTTHHHHHHHHHHHHHHHTTSCCCTTSCEEEEECCBSGGGCHHHHHHHHHHHTT--SSCEE-EEECCBCHH---
T ss_pred CCC--CHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHH--HCCEE-EEEECCCCH---
T ss_conf 144--4345556567779999986199879997589999653023784789999997685--49859-999546726---
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHCCCCEEECCCCCC
Q ss_conf 11139999999999977199997882999998969999997021895999249989989689999992998998388773
Q 002665 364 SGTNAALLLSILKLIDKYDLYGQVAYPKHHKQSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAYGLPIVATKNGGP 443 (895)
Q Consensus 364 ~~~~~~~~~~i~~~~~~~~l~~~v~~~g~~~~~el~~ly~~a~~~~Dv~v~ps~~Eg~gl~~~Ea~a~G~PVIat~~gg~ 443 (895)
....+......+ ..++.+.+..+.+++..+|+.| |+||+||+.||||++++|||+||+|||+++.||.
T Consensus 369 ------~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~a----D~~v~PS~~E~fgl~~lEAma~G~PvI~s~~gG~ 436 (536)
T 3vue_A 369 ------FEKLLKSMEEKY--PGKVRAVVKFNAPLAHLIMAGA----DVLAVPSRFEPCGLIQLQGMRYGTPCACASTGGL 436 (536)
T ss_dssp ------HHHHHHHHHHHS--TTTEEEECSCCHHHHHHHHHHC----SEEEECCSCCSSCSHHHHHHHTTCCEEECSCTHH
T ss_pred ------HHHHHHHHHHHC--CCCEEEEEECCHHHHHHHHHHH----HEEECCCCCCCCCHHHHHHHHCCCCEEECCCCCC
T ss_conf ------899999987616--8854999714688899999862----3425346568988899999986998999079982
Q ss_pred CCCCCCCCCEE----------EECCCCHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHC
Q ss_conf 11101288629----------8099999999999999862--99999999999989986099899999999999972411
Q 002665 444 VDIHRVLDNGL----------LVDPHDQQSIADALLKLVS--DKQLWERCRQNGLKNIHQFSWPEHCKSYLSRISSCKQR 511 (895)
Q Consensus 444 ~eii~~~~~g~----------lv~p~d~~~la~aI~~ll~--~~~~~~~~~~~~~~~v~~~s~~~~a~~~~~~l~~~~~~ 511 (895)
.|+|.++.+|+ +|+|.|+++++++|.+++. +.+.|+++++++.+ ++|||+..|++|+++|+++...
T Consensus 437 ~e~V~dg~~G~~~~~~~~~g~l~~~~d~~~la~ai~ral~~~~~~~~~~~~~~am~--~~fSW~~~A~~y~~ly~~L~~~ 514 (536)
T 3vue_A 437 VDTVIEGKTGFHMGRLSVDCKVVEPSDVKKVAATLKRAIKVVGTPAYEEMVRNCMN--QDLSWKGPAKNWENVLLGLGVA 514 (536)
T ss_dssp HHHCCBTTTEEECCCCCSCTTCCCHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHH--SCCSSHHHHHHHHHHHHTTCC-
T ss_pred HHEEECCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHH--HCCCHHHHHHHHHHHHHHHHHC
T ss_conf 22022798763246677751587999999999999999985295999999999877--3599999999999999986044
No 6
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A
Probab=1.00 E-value=1 Score=324.85 Aligned_cols=435 Identities=17% Similarity=0.158 Sum_probs=278.2
Q ss_pred EEEEEEECCCCCCCCCCCCCCCC--CCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCC--CCCCCC--CC
Q ss_conf 28999832643334766788988--8883146899999998159994138996346458998888786--532345--44
Q 002665 7 NMKYLCSLHGLIRGENMELGRDS--DTGGQVKYVVELARALGSMPGVYRVDLLTRQVSAPDVDWTYAE--PSEMLN--RK 80 (895)
Q Consensus 7 ~~i~~i~~~~~~~~~~~~~g~~~--~~GG~~~~v~~La~~L~~~g~~~~V~iit~~~~~~~~~~~~~~--~~e~~~--~~ 80 (895)
|+|++++.+.. | ..||.++++.+|+++|+++| |+|+|+|..... ....+.. ....+. ..
T Consensus 1 MkIl~v~~~~~-----------P~~~~GG~~~~~~~la~~L~~~G--~~V~vi~~~~~~--~~~~~~~~~~~~~~~~~~~ 65 (485)
T 1rzu_A 1 MNVLSVSSEIY-----------PLIKTGGLADVVGALPIALEAHG--VRTRTLIPGYPA--VKAAVTDPVKCFEFTDLLG 65 (485)
T ss_dssp CEEEEECSCBT-----------TTBCSSHHHHHHHHHHHHHHTTT--CEEEEEEECCHH--HHHHCCSCEEEEEESCSSS
T ss_pred CEEEEEEEEEC-----------CCCCCCCHHHHHHHHHHHHHHCC--CEEEEEECCCCC--CCCCCCCCCEEEEEEEECC
T ss_conf 96999944651-----------56566549999999999999769--869999156443--3444356513689998308
Q ss_pred CCHHHHCCC--CCCCCCEEEEECCCCCCCCCCCC-CCCC------CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEE
Q ss_conf 301211036--88888199995179997652312-3698------81468999999999999985211179999987099
Q 002665 81 NTENLMQGL--GESSGAYIIRIPFGPKDKYVQKE-LLWP------HIPEFVDAALTHIIQISKVLGEQVGSGQPIWPVAI 151 (895)
Q Consensus 81 ~~~~~~~~~--~~~~g~~i~r~~~~~~~~~l~k~-~~~~------~l~~f~~~~~~~~~~~~~~l~~~~~~~~~~~pDvI 151 (895)
.. ..+ ...+|+++++++... +..+. ..+. +.... ..+..+...+.+.++..+. ..+||||
T Consensus 66 ~~----~~~~~~~~~gv~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---~~~~DiI 134 (485)
T 1rzu_A 66 EK----ADLLEVQHERLDLLILDAPA---YYERSGGPYLGQTGKDYPDNW-KRFAALSLAAARIGAGVLP---GWRPDMV 134 (485)
T ss_dssp CC----EEEEEEEETTEEEEEEECHH---HHCSSSCSSBCTTSSBCTTHH-HHHHHHHHHHHHHHTTCSS---SCCCSEE
T ss_pred CE----EEEEEEEECCCEEEEEECHH---HHCCCCCCCCCCCCCCCCCHH-HHHHHHHHHHHHHHHHHCC---CCCCCEE
T ss_conf 74----78999996695699984867---727776655886566653067-9999999999999998615---7999889
Q ss_pred EECCCCCHHHHHHHHCC--CCCCEEEEECCCCHHHH---HHHHHHCCCCHHHHHH-HHHHHHHHHHHHHHCCCCCEEEEC
Q ss_conf 82468820899997402--89999998089714238---9999708888343455-766878689999510136889946
Q 002665 152 HGHYADAGDAAALLSGA--LNVPMVFTGHSLGRDKL---EQLLKQGRLSRDEINT-TYKIMRRIEAEELSLDASEIVITS 225 (895)
Q Consensus 152 h~h~~~~~~~~~~~~~~--~~ip~v~t~H~~~~~~~---~~l~~~g~~~~~~~~~-~~~~~~r~~~e~~~~~~ad~vi~~ 225 (895)
|+|.+.++.++..+++. .++|+|++.|+.+.... ..+...|. ....+.. ...+......++..++.+|.++++
T Consensus 135 h~~~~~~~~~~~~~~~~~~~~~p~v~t~H~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~ 213 (485)
T 1rzu_A 135 HAHDWQAAMTPVYMRYAETPEIPSLLTIHNIAFQGQFGANIFSKLAL-PAHAFGMEGIEYYNDVSFLKGGLQTATALSTV 213 (485)
T ss_dssp EEEHHHHTTHHHHHHHSSSCCCCEEEEESCTTCCCEECGGGGGGSCC-CGGGSSTTTTEETTEEEHHHHHHHHCSEEEES
T ss_pred EECCCCHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCHHHHHHCCC-CHHHCCCCCCCCCCCCCHHHHHHHHCCEEEEC
T ss_conf 96463055789997310358997899966754468788778734399-80320200013256235999888646779960
Q ss_pred CHHHHHHHHHH-HCC-------CCHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 98999999977-159-------9847899999968326444688899869919997688744689998875433679999
Q 002665 226 TRQEIEEQWRL-YDG-------FDPVLERKLRARIKRGVSCHGRFMPRMVVIPPGIEFHHIVRHNGDVDGEVERDEGSPA 297 (895)
Q Consensus 226 s~~~~~~~~~~-y~~-------~~~~~~~~l~~~~~~gv~~~g~~~~~v~vip~Gid~~~f~~~~~~~~~~~~~~~~~~~ 297 (895)
|+...+.+... |+. ..+. ++.+||||||.+.|.+........ .+.....
T Consensus 214 S~~~~~~~~~~~~g~~~~~~~~~~~~---------------------~~~vi~ngvd~~~~~~~~~~~~~~--~~~~~~~ 270 (485)
T 1rzu_A 214 SPSYAEEILTAEFGMGLEGVIGSRAH---------------------VLHGIVNGIDADVWNPATDHLIHD--NYSAANL 270 (485)
T ss_dssp CHHHHHHTTSHHHHTTCHHHHHTTGG---------------------GEEECCCCBCTTTSCTTTCTTSSS--CCBTTBC
T ss_pred CHHHHHHHHCCCCCCCHHHHHHHHCC---------------------CCEEECCCCCCCCCCCCCCCCCCC--CCCCCCH
T ss_conf 87589998354357665899986068---------------------816970898602058866511000--1243244
Q ss_pred CCCC-CHHHHHHHCCCCCC-CCEEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHH
Q ss_conf 9999-60565410158999-869999718999889899999998421334898399998069992022111399999999
Q 002665 298 SPDP-PIWSEIMHFFSNPR-KPMILALARPDPKKNITTLVKAFGECRPLRELANLTLIMGNRDDIDEMSGTNAALLLSIL 375 (895)
Q Consensus 298 ~~~~-~~~~~~~~~~~~~~-~~~Il~vgrl~~~Kgi~~ll~A~~~l~~~~~~~~l~livG~~~~~~~l~~~~~~~~~~i~ 375 (895)
.... .......++..+++ .++|+++||+.+.||++.+++|+..+.+ +...+ +++|+++. .+...+.
T Consensus 271 ~~~~~~~~~~r~~~~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~--~~~~l-~ivG~g~~---------~~~~~l~ 338 (485)
T 1rzu_A 271 KNRALNKKAVAEHFRIDDDGSPLFCVISRLTWQKGIDLMAEAVDEIVS--LGGRL-VVLGAGDV---------ALEGALL 338 (485)
T ss_dssp TTHHHHHHHHHHHHTCCCSSSCEEEEESCBSTTTTHHHHHTTHHHHHH--TTCEE-EEEECBCH---------HHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHH--CCCEE-EEEECCCH---------HHHHHHH
T ss_conf 567886999999629888998399997257531287999999999872--69569-99968946---------8999999
Q ss_pred HHHHHCCCCCCEE-ECCCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHCCCCEEECCCCCCCCCCCCC----
Q ss_conf 9997719999788-29999989699999970218959992499899896899999929989983887731110128----
Q 002665 376 KLIDKYDLYGQVA-YPKHHKQSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAYGLPIVATKNGGPVDIHRVL---- 450 (895)
Q Consensus 376 ~~~~~~~l~~~v~-~~g~~~~~el~~ly~~a~~~~Dv~v~ps~~Eg~gl~~~Ea~a~G~PVIat~~gg~~eii~~~---- 450 (895)
.++.+++ ++|. |.|+ +.+++..+|+.| |++|+||..||||++++||||||+|||+++.||..|++.++
T Consensus 339 ~~~~~~~--~~v~~~~g~-~~~~~~~~~~~a----dv~v~pS~~E~~~~~~lEAma~G~PvI~s~~gg~~e~v~~~~~~~ 411 (485)
T 1rzu_A 339 AAASRHH--GRVGVAIGY-NEPLSHLMQAGC----DAIIIPSRFEPCGLTQLYALRYGCIPVVARTGGLADTVIDANHAA 411 (485)
T ss_dssp HHHHHTT--TTEEEEESC-CHHHHHHHHHHC----SEEEECCSCCSSCSHHHHHHHHTCEEEEESSHHHHHHCCBCCHHH
T ss_pred HHHHHCC--CCEEEECCC-CHHHHHHHHHCC----CEEEECCCCCCCCHHHHHHHHCCCCEEEECCCCHHHEECCCCCCC
T ss_conf 9998678--868994389-979999998529----999978446887779999997799779808998311321565332
Q ss_pred -----CCEEEECCCCHHHHHHHHHHHH---HCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCC
Q ss_conf -----8629809999999999999986---2999999999999899860998999999999999724119
Q 002665 451 -----DNGLLVDPHDQQSIADALLKLV---SDKQLWERCRQNGLKNIHQFSWPEHCKSYLSRISSCKQRQ 512 (895)
Q Consensus 451 -----~~g~lv~p~d~~~la~aI~~ll---~~~~~~~~~~~~~~~~v~~~s~~~~a~~~~~~l~~~~~~~ 512 (895)
.+|+++++.|+++++++|.+++ ++++.++++++++++ ++|||+.++++|.++|+++....
T Consensus 412 ~~~~~~~G~l~~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~--~~fs~~~~~~~~~~~y~~~~~~~ 479 (485)
T 1rzu_A 412 LASKAATGVQFSPVTLDGLKQAIRRTVRYYHDPKLWTQMQKLGMK--SDVSWEKSAGLYAALYSQLISKG 479 (485)
T ss_dssp HHTTCCCBEEESSCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--CCCBHHHHHHHHHHHHHHHTC--
T ss_pred CCCCCCCCEEECCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHHHHCCC
T ss_conf 345677634867899999999999999872799999999999998--86896999999999999863799
No 7
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A
Probab=1.00 E-value=1 Score=322.30 Aligned_cols=439 Identities=17% Similarity=0.144 Sum_probs=278.7
Q ss_pred EEEEEEECCCCCCCCCCCCCCCC--CCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCC--CCCC--------CCCCCC
Q ss_conf 28999832643334766788988--88831468999999981599941389963464589--9888--------878653
Q 002665 7 NMKYLCSLHGLIRGENMELGRDS--DTGGQVKYVVELARALGSMPGVYRVDLLTRQVSAP--DVDW--------TYAEPS 74 (895)
Q Consensus 7 ~~i~~i~~~~~~~~~~~~~g~~~--~~GG~~~~v~~La~~L~~~g~~~~V~iit~~~~~~--~~~~--------~~~~~~ 74 (895)
|+|++++.... | ..||.++++.+|+++|+++| |+|+|+|...... .... .++...
T Consensus 1 MkIl~v~~~~~-----------P~~~~GG~~~~~~~la~~L~~~G--~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (485)
T 2qzs_A 1 MQVLHVCSEMF-----------PLLKTGGLADVIGALPAAQIADG--VDARVLLPAFPDIRRGVTDAQVVSRRDTFAGHI 67 (485)
T ss_dssp CEEEEECSCBT-----------TTBCSSHHHHHHHHHHHHHHHTT--CEEEEEEECCHHHHHHCTTCEEEEEECCTTCCE
T ss_pred CEEEEEEEECC-----------CCCCCCCHHHHHHHHHHHHHHCC--CEEEEEECCCCCCCCCCCCCEEEEEECCCCCCE
T ss_conf 96999964104-----------66567739999999999999749--878999447643454345640578741568717
Q ss_pred CCCCCCCCHHHHCCCCCCCCCEEEEECCCCCCCCCCCCC-CC------CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 234544301211036888881999951799976523123-69------88146899999999999998521117999998
Q 002665 75 EMLNRKNTENLMQGLGESSGAYIIRIPFGPKDKYVQKEL-LW------PHIPEFVDAALTHIIQISKVLGEQVGSGQPIW 147 (895)
Q Consensus 75 e~~~~~~~~~~~~~~~~~~g~~i~r~~~~~~~~~l~k~~-~~------~~l~~f~~~~~~~~~~~~~~l~~~~~~~~~~~ 147 (895)
+.. ....+|+.+++++... +..+.. .+ .+.... ..+..+...+.+.++.. . ...+
T Consensus 68 ~~~-----------~~~~~gv~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~--~~~~ 129 (485)
T 2qzs_A 68 TLL-----------FGHYNGVGIYLIDAPH---LYDRPGSPYHDTNLFAYTDNV-LRFALLGWVGAEMASGL-D--PFWR 129 (485)
T ss_dssp EEE-----------EEEETTEEEEEEECHH---HHCCSSCSSBCTTSCBCTTHH-HHHHHHHHHHHHHTTTS-S--TTCC
T ss_pred EEE-----------EEEECCCEEEEEECHH---HCCCCCCCCCCCCCCCCCCHH-HHHHHHHHHHHHHHHHH-C--CCCC
T ss_conf 999-----------9987894799970826---506898766775457787358-99999999999999984-5--6789
Q ss_pred CCEEEECCCCCHHHHHHHH-CCCCCCEEEEECCCCHHHH---HHHHHHCCCCHHHHHH-HHHHHHHHHHHHHHCCCCCEE
Q ss_conf 7099824688208999974-0289999998089714238---9999708888343455-766878689999510136889
Q 002665 148 PVAIHGHYADAGDAAALLS-GALNVPMVFTGHSLGRDKL---EQLLKQGRLSRDEINT-TYKIMRRIEAEELSLDASEIV 222 (895)
Q Consensus 148 pDvIh~h~~~~~~~~~~~~-~~~~ip~v~t~H~~~~~~~---~~l~~~g~~~~~~~~~-~~~~~~r~~~e~~~~~~ad~v 222 (895)
|||||+|.+.++.++..++ +..++|+|+|.|+.+.... ..+...|. ....+.. ...+......+...++.+|.+
T Consensus 130 ~Divh~~~~~~~~~~~~~~~~~~~~p~v~t~H~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ad~v 208 (485)
T 2qzs_A 130 PDVVHAHDWHAGLAPAYLAARGRPAKSVFTVHNLAYQGMFYAHHMNDIQL-PWSFFNIHGLEFNGQISFLKAGLYYADHI 208 (485)
T ss_dssp CSEEEEETGGGTTHHHHHHHTTCSSEEEEEESCTTCCCEEEGGGGGTTTC-CGGGCSTTTTEETTEEEHHHHHHHHCSEE
T ss_pred CCEEEEECCCHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHHHCCC-CCHHCCCCCCCCCCCCCHHHHHHHHCCEE
T ss_conf 97899606213378999754368997899946841357889888876499-91321311123246546999998753868
Q ss_pred EECCHHHHHHHHHH-HCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 94698999999977-15998478999999683264446888998699199976887446899988754336799999999
Q 002665 223 ITSTRQEIEEQWRL-YDGFDPVLERKLRARIKRGVSCHGRFMPRMVVIPPGIEFHHIVRHNGDVDGEVERDEGSPASPDP 301 (895)
Q Consensus 223 i~~s~~~~~~~~~~-y~~~~~~~~~~l~~~~~~gv~~~g~~~~~v~vip~Gid~~~f~~~~~~~~~~~~~~~~~~~~~~~ 301 (895)
+++|+...+.+... |+.... ..+.... ...++.+||||+|.+.|.+....... ..+.........
T Consensus 209 i~~S~~~~~~~~~~~~~~~~~---~~~~~~~---------~~~~~~vi~ngvd~~~~~~~~~~~~~--~~~~~~~~~~~~ 274 (485)
T 2qzs_A 209 TAVSPTYAREITEPQFAYGME---GLLQQRH---------REGRLSGVLNGVDEKIWSPETDLLLA--SRYTRDTLEDKA 274 (485)
T ss_dssp EESSHHHHHHTTSHHHHTTCH---HHHHHHH---------HTTCEEECCCCCCTTTSCTTTCTTSS--SCCCTTCGGGGH
T ss_pred EECCHHHHHHHHCCCCCCCHH---HHHHHHC---------CCCCEEEEECCCCCCCCCCCCCCCCC--CCCCCCCHHHHH
T ss_conf 856889999985401472468---9998506---------67866997469876645864442221--236630065778
Q ss_pred -CHHHHHHHCCCCC--CCCEEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf -6056541015899--9869999718999889899999998421334898399998069992022111399999999999
Q 002665 302 -PIWSEIMHFFSNP--RKPMILALARPDPKKNITTLVKAFGECRPLRELANLTLIMGNRDDIDEMSGTNAALLLSILKLI 378 (895)
Q Consensus 302 -~~~~~~~~~~~~~--~~~~Il~vgrl~~~Kgi~~ll~A~~~l~~~~~~~~l~livG~~~~~~~l~~~~~~~~~~i~~~~ 378 (895)
......+++..++ +.++|+++||+.+.||++.+++|+..+.+ +...+ +++|+++. .+...+..++
T Consensus 275 ~~~~~~r~~~~~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~--~~~~l-~ivG~g~~---------~~~~~l~~~~ 342 (485)
T 2qzs_A 275 ENKRQLQIAMGLKVDDKVPLFAVVSRLTSQKGLDLVLEALPGLLE--QGGQL-ALLGAGDP---------VLQEGFLAAA 342 (485)
T ss_dssp HHHHHHHHHHTCCCCTTSCEEEEEEEESGGGCHHHHHHHHHHHHH--TTCEE-EEEEEECH---------HHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHH--CCCEE-EEEECCCH---------HHHHHHHHHH
T ss_conf 849999987198889997399996667543587999999999862--79489-99928956---------7899999999
Q ss_pred HHCCCCCCEE-ECCCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHCCCCEEECCCCCCCCCCCCC-------
Q ss_conf 7719999788-29999989699999970218959992499899896899999929989983887731110128-------
Q 002665 379 DKYDLYGQVA-YPKHHKQSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAYGLPIVATKNGGPVDIHRVL------- 450 (895)
Q Consensus 379 ~~~~l~~~v~-~~g~~~~~el~~ly~~a~~~~Dv~v~ps~~Eg~gl~~~Ea~a~G~PVIat~~gg~~eii~~~------- 450 (895)
.+++ ++|. |.|+ +.+++..+|+.| |++|+||..||||++++||||||+|||+++.||..|++.++
T Consensus 343 ~~~~--~~v~~~~g~-~~~~~~~~~~~a----dv~v~pS~~E~~g~~~lEAma~G~PvI~s~~gg~~e~v~~~~~~~~~~ 415 (485)
T 2qzs_A 343 AEYP--GQVGVQIGY-HEAFSHRIMGGA----DVILVPSRFEPCGLTQLYGLKYGTLPLVRRTGGLADTVSDCSLENLAD 415 (485)
T ss_dssp HHST--TTEEEEESC-CHHHHHHHHHHC----SEEEECCSCCSSCSHHHHHHHHTCEEEEESSHHHHHHCCBCCHHHHHT
T ss_pred HHCC--CCEEEECCC-CHHHHHHHHHHC----CEEEECCCCCCCCHHHHHHHHCCCCEEECCCCCCCCEECCCCCCCCCC
T ss_conf 7579--938994789-979999999758----899978856787679999997799779878998325521576443444
Q ss_pred --CCEEEECCCCHHHHHHHHHHHH---HCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCC
Q ss_conf --8629809999999999999986---2999999999999899860998999999999999724119
Q 002665 451 --DNGLLVDPHDQQSIADALLKLV---SDKQLWERCRQNGLKNIHQFSWPEHCKSYLSRISSCKQRQ 512 (895)
Q Consensus 451 --~~g~lv~p~d~~~la~aI~~ll---~~~~~~~~~~~~~~~~v~~~s~~~~a~~~~~~l~~~~~~~ 512 (895)
.+|+++++.|+++++++|.+++ ++++.++++++++++ ++|||+.++++|+++|+++...+
T Consensus 416 ~~~~G~l~~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~--~~fs~~~~~~~~~~ly~~~~~~~ 480 (485)
T 2qzs_A 416 GVASGFVFEDSNAWSLLRAIRRAFVLWSRPSLWRFVQRQAMA--MDFSWQVAAKSYRELYYRLKLEH 480 (485)
T ss_dssp TCCCBEEECSSSHHHHHHHHHHHHHHHTSHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHC---
T ss_pred CCCCEEEECCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 666459977899999999999999870899999999999876--32898999999999999865421
No 8
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=1.00 E-value=1 Score=314.95 Aligned_cols=374 Identities=17% Similarity=0.203 Sum_probs=281.1
Q ss_pred CCCEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 04328999832643334766788988888314689999999815999413899634645899888878653234544301
Q 002665 4 VDFNMKYLCSLHGLIRGENMELGRDSDTGGQVKYVVELARALGSMPGVYRVDLLTRQVSAPDVDWTYAEPSEMLNRKNTE 83 (895)
Q Consensus 4 ~~~~~i~~i~~~~~~~~~~~~~g~~~~~GG~~~~v~~La~~L~~~g~~~~V~iit~~~~~~~~~~~~~~~~e~~~~~~~~ 83 (895)
-+.|+|++++.... |..||.++++.+++++| .| |+|+++|....... .
T Consensus 2 ~~~mkIl~v~~~~~-----------p~~gG~~~~~~~l~~~L--~g--~~v~v~~~~~~~~~--------~--------- 49 (394)
T 3okp_A 2 SASRKTLVVTNDFP-----------PRIGGIQSYLRDFIATQ--DP--ESIVVFASTQNAEE--------A--------- 49 (394)
T ss_dssp --CCCEEEEESCCT-----------TSCSHHHHHHHHHHTTS--CG--GGEEEEEECSSHHH--------H---------
T ss_pred CCCCEEEEEECCCC-----------CCCCHHHHHHHHHHHHH--CC--CEEEEEECCCCCCC--------H---------
T ss_conf 98866999927668-----------86551999999999985--69--76899977888642--------4---------
Q ss_pred HHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCHHHHH
Q ss_conf 21103688888199995179997652312369881468999999999999985211179999987099824688208999
Q 002665 84 NLMQGLGESSGAYIIRIPFGPKDKYVQKELLWPHIPEFVDAALTHIIQISKVLGEQVGSGQPIWPVAIHGHYADAGDAAA 163 (895)
Q Consensus 84 ~~~~~~~~~~g~~i~r~~~~~~~~~l~k~~~~~~l~~f~~~~~~~~~~~~~~l~~~~~~~~~~~pDvIh~h~~~~~~~~~ 163 (895)
.......++.+++++.... ++ ...+...+.+.+.+ .+||+||+|.........
T Consensus 50 ---~~~~~~~~~~~~~~~~~~~---------~~-~~~~~~~l~~~~~~--------------~~~Dvv~~~~~~~~~~~~ 102 (394)
T 3okp_A 50 ---HAYDKTLDYEVIRWPRSVM---------LP-TPTTAHAMAEIIRE--------------REIDNVWFGAAAPLALMA 102 (394)
T ss_dssp ---HHHHTTCSSEEEEESSSSC---------CS-CHHHHHHHHHHHHH--------------TTCSEEEESSCTTGGGGH
T ss_pred ---HHHCCCCCEEEEECCCCCC---------CC-CHHHHHHHHHHHHH--------------CCCCEEEECCCCHHHHHH
T ss_conf ---4433456628998456545---------55-51469999999876--------------389889988854488999
Q ss_pred HHHCCCCCC-EEEEECCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHCCCCH
Q ss_conf 974028999-9998089714238999970888834345576687868999951013688994698999999977159984
Q 002665 164 LLSGALNVP-MVFTGHSLGRDKLEQLLKQGRLSRDEINTTYKIMRRIEAEELSLDASEIVITSTRQEIEEQWRLYDGFDP 242 (895)
Q Consensus 164 ~~~~~~~ip-~v~t~H~~~~~~~~~l~~~g~~~~~~~~~~~~~~~r~~~e~~~~~~ad~vi~~s~~~~~~~~~~y~~~~~ 242 (895)
.+++..++| +|++.|+...... . ....++ .++..++.+|.+++.|+...+.+...+.. .
T Consensus 103 ~~~~~~~~~~~i~~~h~~~~~~~-------~---------~~~~~~--~~~~~~~~~d~ii~~s~~~~~~~~~~~~~-~- 162 (394)
T 3okp_A 103 GTAKQAGASKVIASTHGHEVGWS-------M---------LPGSRQ--SLRKIGTEVDVLTYISQYTLRRFKSAFGS-H- 162 (394)
T ss_dssp HHHHHTTCSEEEEECCSTHHHHT-------T---------SHHHHH--HHHHHHHHCSEEEESCHHHHHHHHHHHCS-S-
T ss_pred HHHHHCCCCCEEEEECCCHHHHH-------H---------CCHHHH--HHHHHHHHCCEEEECCHHHHHHHHHHCCC-C-
T ss_conf 99975189819999346423332-------1---------220348--99999986797997688999999984189-9-
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEE
Q ss_conf 78999999683264446888998699199976887446899988754336799999999605654101589998699997
Q 002665 243 VLERKLRARIKRGVSCHGRFMPRMVVIPPGIEFHHIVRHNGDVDGEVERDEGSPASPDPPIWSEIMHFFSNPRKPMILAL 322 (895)
Q Consensus 243 ~~~~~l~~~~~~gv~~~g~~~~~v~vip~Gid~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Il~v 322 (895)
.++.++|||+|...|.+.... .......++...++.++|+++
T Consensus 163 ---------------------~~~~vi~ngv~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~i~~~ 204 (394)
T 3okp_A 163 ---------------------PTFEHLPSGVDVKRFTPATPE-----------------DKSATRKKLGFTDTTPVIACN 204 (394)
T ss_dssp ---------------------SEEEECCCCBCTTTSCCCCHH-----------------HHHHHHHHTTCCTTCCEEEEE
T ss_pred ---------------------CCEEEECCCCCHHHCCCCCCH-----------------HHHHHHHHCCCCCCCEEEEEE
T ss_conf ---------------------985883698588875887721-----------------468999864998576699997
Q ss_pred ECCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCHHHHH
Q ss_conf 18999889899999998421334898399998069992022111399999999999771999978829999989699999
Q 002665 323 ARPDPKKNITTLVKAFGECRPLRELANLTLIMGNRDDIDEMSGTNAALLLSILKLIDKYDLYGQVAYPKHHKQSDVPDIY 402 (895)
Q Consensus 323 grl~~~Kgi~~ll~A~~~l~~~~~~~~l~livG~~~~~~~l~~~~~~~~~~i~~~~~~~~l~~~v~~~g~~~~~el~~ly 402 (895)
||+.+.||++.+++|+..+....+...+ +++|+++..+.+ ..++ .++.++|.|.|+++.+++..+|
T Consensus 205 G~~~~~Kg~~~li~a~~~l~~~~~~~~l-~i~G~g~~~~~l-----------~~~~--~~~~~~v~~~g~~~~~~~~~~~ 270 (394)
T 3okp_A 205 SRLVPRKGQDSLIKAMPQVIAARPDAQL-LIVGSGRYESTL-----------RRLA--TDVSQNVKFLGRLEYQDMINTL 270 (394)
T ss_dssp SCSCGGGCHHHHHHHHHHHHHHSTTCEE-EEECCCTTHHHH-----------HHHT--GGGGGGEEEEESCCHHHHHHHH
T ss_pred ECCCCCCCHHHHHHHHHHHHHHCCCEEE-EEECCCHHHHHH-----------HHHH--HCCCCEEEECCCCCHHHHHHHH
T ss_conf 6441345887999999998861898699-998686479999-----------9987--5545729990789978999999
Q ss_pred HHHHCCCCEEEECCCC-------CCCCHHHHHHHHCCCCEEECCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHCH
Q ss_conf 9702189599924998-------998968999999299899838877311101288629809999999999999986299
Q 002665 403 RLAAKTKGVFINPAFI-------EPFGLTLIEAAAYGLPIVATKNGGPVDIHRVLDNGLLVDPHDQQSIADALLKLVSDK 475 (895)
Q Consensus 403 ~~a~~~~Dv~v~ps~~-------Eg~gl~~~Ea~a~G~PVIat~~gg~~eii~~~~~g~lv~p~d~~~la~aI~~ll~~~ 475 (895)
+.| |++++||.. |+||++++|||++|+|||+++.|+..|++.++ +|+++++.|+++++++|.++++++
T Consensus 271 ~~a----d~~v~ps~~~~~~~~~e~~~~~~~Ea~a~G~PvI~~~~~~~~e~i~~~-~g~~~~~~d~~~l~~~i~~l~~~~ 345 (394)
T 3okp_A 271 AAA----DIFAMPARTRGGGLDVEGLGIVYLEAQACGVPVIAGTSGGAPETVTPA-TGLVVEGSDVDKLSELLIELLDDP 345 (394)
T ss_dssp HHC----SEEEECCCCBGGGTBCCSSCHHHHHHHHTTCCEEECSSTTGGGGCCTT-TEEECCTTCHHHHHHHHHHHHTCH
T ss_pred HHC----CEEEECCCCCCCCCCCCCCCCHHHHHHHCCCCEEEECCCCHHHHHHCC-CCEEECCCCHHHHHHHHHHHHHCH
T ss_conf 868----999945755566656555673999999759979993899737787468-856728999999999999998199
Q ss_pred HHHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf 99999999998998-609989999999999997241199
Q 002665 476 QLWERCRQNGLKNI-HQFSWPEHCKSYLSRISSCKQRQP 513 (895)
Q Consensus 476 ~~~~~~~~~~~~~v-~~~s~~~~a~~~~~~l~~~~~~~~ 513 (895)
+.++++++++++.+ ++|+|+.+++++.++|+++.+..+
T Consensus 346 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~r~~~ 384 (394)
T 3okp_A 346 IRRAAMGAAGRAHVEAEWSWEIMGERLTNILQSEPRKLA 384 (394)
T ss_dssp HHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHSCCC---
T ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCC
T ss_conf 999999999999998747999999999999997203761
No 9
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Probab=1.00 E-value=1 Score=311.98 Aligned_cols=362 Identities=18% Similarity=0.250 Sum_probs=268.2
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCEEEEECCCCCCCC
Q ss_conf 88883146899999998159994138996346458998888786532345443012110368888819999517999765
Q 002665 29 SDTGGQVKYVVELARALGSMPGVYRVDLLTRQVSAPDVDWTYAEPSEMLNRKNTENLMQGLGESSGAYIIRIPFGPKDKY 108 (895)
Q Consensus 29 ~~~GG~~~~v~~La~~L~~~g~~~~V~iit~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~g~~i~r~~~~~~~~~ 108 (895)
|..||.+.++.+|+++|+++| |+|+++|.... . ... + ..+++.++.++.... ..
T Consensus 24 p~~GG~~~~~~~la~~L~~~G--~~V~v~~~~~~--~-----~~~-~---------------~~~~i~~~~~~~~~~-~~ 77 (394)
T 2jjm_A 24 PSVGGSGVVGTELGKQLAERG--HEIHFITSGLP--F-----RLN-K---------------VYPNIYFHEVTVNQY-SV 77 (394)
T ss_dssp C--CHHHHHHHHHHHHHHHTT--CEEEEECSSCC------------C---------------CCTTEEEECCCCC-----
T ss_pred CCCCCHHHHHHHHHHHHHHCC--CEEEEEECCCC--C-----CCC-C---------------CCCCEEEEECCCCCC-CC
T ss_conf 898987899999999999689--87999968887--7-----620-0---------------378628985256665-40
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCC-HHHHHHHHCCC--CCCEEEEECCCCHHHH
Q ss_conf 23123698814689999999999999852111799999870998246882-08999974028--9999998089714238
Q 002665 109 VQKELLWPHIPEFVDAALTHIIQISKVLGEQVGSGQPIWPVAIHGHYADA-GDAAALLSGAL--NVPMVFTGHSLGRDKL 185 (895)
Q Consensus 109 l~k~~~~~~l~~f~~~~~~~~~~~~~~l~~~~~~~~~~~pDvIh~h~~~~-~~~~~~~~~~~--~ip~v~t~H~~~~~~~ 185 (895)
. ....+. +.....+.+.+++ .+||+||+|+..+ .+.+...++.. ++|+|++.|+.....
T Consensus 78 ~---~~~~~~-------~~~~~~l~~~l~~-------~~~Dvv~~~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~- 139 (394)
T 2jjm_A 78 F---QYPPYD-------LALASKMAEVAQR-------ENLDILHVHYAIPHAICAYLAKQMIGERIKIVTTLHGTDITV- 139 (394)
T ss_dssp C---CSCCHH-------HHHHHHHHHHHHH-------HTCSEEEECSSTTHHHHHHHHHHHTTTCSEEEEECCHHHHHT-
T ss_pred C---CCCCCC-------HHHHHHHHHHHHH-------CCCCEEEECCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCC-
T ss_conf 0---156520-------7999999999977-------699999972433777889998886267877799971575212-
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 99997088883434557668786899995101368899469899999997715998478999999683264446888998
Q 002665 186 EQLLKQGRLSRDEINTTYKIMRRIEAEELSLDASEIVITSTRQEIEEQWRLYDGFDPVLERKLRARIKRGVSCHGRFMPR 265 (895)
Q Consensus 186 ~~l~~~g~~~~~~~~~~~~~~~r~~~e~~~~~~ad~vi~~s~~~~~~~~~~y~~~~~~~~~~l~~~~~~gv~~~g~~~~~ 265 (895)
.+. . . ..++ .+...++.+|.++++|+...+.+...+.. +. +
T Consensus 140 -----~~~-~-----~---~~~~--~~~~~~~~ad~ii~~s~~~~~~~~~~~~~--~~---------------------~ 180 (394)
T 2jjm_A 140 -----LGS-D-----P---SLNN--LIRFGIEQSDVVTAVSHSLINETHELVKP--NK---------------------D 180 (394)
T ss_dssp -----TTT-C-----T---TTHH--HHHHHHHHSSEEEESCHHHHHHHHHHTCC--SS---------------------C
T ss_pred -----CCC-C-----H---HHHH--HHHHHHHHCCEEEECCHHHHHHHHHHHCC--CC---------------------C
T ss_conf -----588-8-----7---7889--99999861998999799999999985287--65---------------------6
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHCCCCC
Q ss_conf 69919997688744689998875433679999999960565410158999869999718999889899999998421334
Q 002665 266 MVVIPPGIEFHHIVRHNGDVDGEVERDEGSPASPDPPIWSEIMHFFSNPRKPMILALARPDPKKNITTLVKAFGECRPLR 345 (895)
Q Consensus 266 v~vip~Gid~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Il~vgrl~~~Kgi~~ll~A~~~l~~~~ 345 (895)
+.++|||+|...|.+.. ......++..+++.++|+++||+.+.||++.+++|+..+.+.
T Consensus 181 ~~vi~ngv~~~~~~~~~--------------------~~~~~~~~~~~~~~~~i~~~G~~~~~Kg~~~li~a~~~l~~~- 239 (394)
T 2jjm_A 181 IQTVYNFIDERVYFKRD--------------------MTQLKKEYGISESEKILIHISNFRKVKRVQDVVQAFAKIVTE- 239 (394)
T ss_dssp EEECCCCCCTTTCCCCC--------------------CHHHHHHTTCC---CEEEEECCCCGGGTHHHHHHHHHHHHHS-
T ss_pred EEEECCCCCHHHCCCCC--------------------HHHHHHHCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHH-
T ss_conf 79955875687608863--------------------488998719998880899950466535889999999999853-
Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCHHH
Q ss_conf 89839999806999202211139999999999977199997882999998969999997021895999249989989689
Q 002665 346 ELANLTLIMGNRDDIDEMSGTNAALLLSILKLIDKYDLYGQVAYPKHHKQSDVPDIYRLAAKTKGVFINPAFIEPFGLTL 425 (895)
Q Consensus 346 ~~~~l~livG~~~~~~~l~~~~~~~~~~i~~~~~~~~l~~~v~~~g~~~~~el~~ly~~a~~~~Dv~v~ps~~Eg~gl~~ 425 (895)
....+ +++|+++.. ..+.+.+.++++.++|.|.|+ .+++..+|+.| |++++||..|+||+++
T Consensus 240 ~~~~l-~i~G~g~~~-----------~~l~~~~~~~~l~~~v~~~g~--~~~~~~~~~~a----dv~v~ps~~e~~~~~~ 301 (394)
T 2jjm_A 240 VDAKL-LLVGDGPEF-----------CTILQLVKNLHIEDRVLFLGK--QDNVAELLAMS----DLMLLLSEKESFGLVL 301 (394)
T ss_dssp SCCEE-EEECCCTTH-----------HHHHHHHHTTTCGGGBCCCBS--CSCTHHHHHTC----SEEEECCSCCSCCHHH
T ss_pred CCCEE-EEECCCHHH-----------HHHHHHHHHCCCCCEEEEECC--HHHHHHHHHHC----CEEEECCCCCCCCHHH
T ss_conf 79789-998896579-----------999999997399875999276--66599999867----8999656667872689
Q ss_pred HHHHHCCCCEEECCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHH-HHCCHHHHHHHHHHH
Q ss_conf 9999929989983887731110128862980999999999999998629999999999998998-609989999999999
Q 002665 426 IEAAAYGLPIVATKNGGPVDIHRVLDNGLLVDPHDQQSIADALLKLVSDKQLWERCRQNGLKNI-HQFSWPEHCKSYLSR 504 (895)
Q Consensus 426 ~Ea~a~G~PVIat~~gg~~eii~~~~~g~lv~p~d~~~la~aI~~ll~~~~~~~~~~~~~~~~v-~~~s~~~~a~~~~~~ 504 (895)
+|||+||+|||+++.|+..|++.++.+|+++++.|+++++++|.+++++++.++++++++++.+ ++|+|+.+++++.++
T Consensus 302 ~EAma~G~PvI~~~~~~~~e~v~~~~~g~~~~~~d~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 381 (394)
T 2jjm_A 302 LEAMACGVPCIGTRVGGIPEVIQHGDTGYLCEVGDTTGVADQAIQLLKDEELHRNMGERARESVYEQFRSEKIVSQYETI 381 (394)
T ss_dssp HHHHHTTCCEEEECCTTSTTTCCBTTTEEEECTTCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHCCCCEEEECCCCHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf 99996499889815898077763488539968999999999999997497999999999999998737999999999999
Q ss_pred HHHHHHCC
Q ss_conf 99724119
Q 002665 505 ISSCKQRQ 512 (895)
Q Consensus 505 l~~~~~~~ 512 (895)
|+++..+.
T Consensus 382 ~~~~~~~~ 389 (394)
T 2jjm_A 382 YYDVLRDD 389 (394)
T ss_dssp HHHTC---
T ss_pred HHHHHHHH
T ss_conf 99999666
No 10
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Probab=1.00 E-value=1 Score=311.21 Aligned_cols=369 Identities=15% Similarity=0.180 Sum_probs=267.0
Q ss_pred EEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 28999832643334766788988888314689999999815999413899634645899888878653234544301211
Q 002665 7 NMKYLCSLHGLIRGENMELGRDSDTGGQVKYVVELARALGSMPGVYRVDLLTRQVSAPDVDWTYAEPSEMLNRKNTENLM 86 (895)
Q Consensus 7 ~~i~~i~~~~~~~~~~~~~g~~~~~GG~~~~v~~La~~L~~~g~~~~V~iit~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 86 (895)
|||++++.+.. | .||.++++.+++++|+++| |+|+++|.......
T Consensus 1 MkIl~i~~~~~-----------~-~gG~~~~~~~l~~~L~~~G--~~V~v~~~~~~~~~--------------------- 45 (374)
T 2iw1_A 1 MIVAFCLYKYF-----------P-FGGLQRDFMRIASTVAARG--HHVRVYTQSWEGDC--------------------- 45 (374)
T ss_dssp -CEEEECSEEC-----------T-TCHHHHHHHHHHHHHHHTT--CCEEEEESEECSCC---------------------
T ss_pred CEEEEEEEECC-----------C-CCCHHHHHHHHHHHHHHCC--CEEEEEECCCCCCC---------------------
T ss_conf 96999972158-----------8-7616359999999999679--84899964898878---------------------
Q ss_pred CCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCHHHHHHHH
Q ss_conf 03688888199995179997652312369881468999999999999985211179999987099824688208999974
Q 002665 87 QGLGESSGAYIIRIPFGPKDKYVQKELLWPHIPEFVDAALTHIIQISKVLGEQVGSGQPIWPVAIHGHYADAGDAAALLS 166 (895)
Q Consensus 87 ~~~~~~~g~~i~r~~~~~~~~~l~k~~~~~~l~~f~~~~~~~~~~~~~~l~~~~~~~~~~~pDvIh~h~~~~~~~~~~~~ 166 (895)
.+++++++++..... . . .........+.+.+.+ .+||+||+|.+.++..+....
T Consensus 46 -----~~~~~v~~~~~~~~~-~---------~----~~~~~~~~~l~~~i~~-------~~~Dvv~~~~~~~~~~~~~~~ 99 (374)
T 2iw1_A 46 -----PKAFELIQVPVKSHT-N---------H----GRNAEYYAWVQNHLKE-------HPADRVVGFNKMPGLDVYFAA 99 (374)
T ss_dssp -----CTTCEEEECCCCCSS-H---------H----HHHHHHHHHHHHHHHH-------SCCSEEEESSCCTTCSEEECC
T ss_pred -----CCCCEEEEECCCCCC-C---------H----HHHHHHHHHHHHHHHC-------CCCCEEEEECCCCCCEEEECC
T ss_conf -----877479997168644-3---------0----1677899999999850-------699889996677885213001
Q ss_pred CCCCCCEEEEECCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHC--CCCCEEEECCHHHHHHHHHHHCCCCHHH
Q ss_conf 02899999980897142389999708888343455766878689999510--1368899469899999997715998478
Q 002665 167 GALNVPMVFTGHSLGRDKLEQLLKQGRLSRDEINTTYKIMRRIEAEELSL--DASEIVITSTRQEIEEQWRLYDGFDPVL 244 (895)
Q Consensus 167 ~~~~ip~v~t~H~~~~~~~~~l~~~g~~~~~~~~~~~~~~~r~~~e~~~~--~~ad~vi~~s~~~~~~~~~~y~~~~~~~ 244 (895)
...+++.+.+.|+.... ....++...++ +...+ +.+|.++++|+...+.+...|+.. +.
T Consensus 100 ~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~--~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~-~~- 160 (374)
T 2iw1_A 100 DVCYAEKVAQEKGFLYR---------------LTSRYRHYAAF--ERATFEQGKSTKLMMLTDKQIADFQKHYQTE-PE- 160 (374)
T ss_dssp SCCHHHHHHHHCCHHHH---------------TSHHHHHHHHH--HHHHHSTTCCCEEEESCHHHHHHHHHHHCCC-GG-
T ss_pred CCCCCEEEEECCCCHHH---------------HCHHHHHHHHH--HHHHHHCCCCCEEEECCHHHHHHHHHHHCCC-HH-
T ss_conf 56542133303562121---------------04778999999--9998642677579986989999999971897-11-
Q ss_pred HHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEEEC
Q ss_conf 99999968326444688899869919997688744689998875433679999999960565410158999869999718
Q 002665 245 ERKLRARIKRGVSCHGRFMPRMVVIPPGIEFHHIVRHNGDVDGEVERDEGSPASPDPPIWSEIMHFFSNPRKPMILALAR 324 (895)
Q Consensus 245 ~~~l~~~~~~gv~~~g~~~~~v~vip~Gid~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Il~vgr 324 (895)
++.++|||+|...|.+.... +.......++..++++++|+++||
T Consensus 161 --------------------~~~vi~ngv~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~i~~~G~ 204 (374)
T 2iw1_A 161 --------------------RFQILPPGIYPDRKYSEQIP----------------NSREIYRQKNGIKEQQNLLLQVGS 204 (374)
T ss_dssp --------------------GEEECCCCCCGGGSGGGSCT----------------THHHHHHHHTTCCTTCEEEEEECS
T ss_pred --------------------HEEEECCCCCHHHCCCCCCH----------------HHHHHHHHHHCCCCCCEEEEEECC
T ss_conf --------------------06885698587761764423----------------579999997289978729999646
Q ss_pred CCCCCCHHHHHHHHHHCCCCCCCCCEE-EEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCHHHHHH
Q ss_conf 999889899999998421334898399-9980699920221113999999999997719999788299999896999999
Q 002665 325 PDPKKNITTLVKAFGECRPLRELANLT-LIMGNRDDIDEMSGTNAALLLSILKLIDKYDLYGQVAYPKHHKQSDVPDIYR 403 (895)
Q Consensus 325 l~~~Kgi~~ll~A~~~l~~~~~~~~l~-livG~~~~~~~l~~~~~~~~~~i~~~~~~~~l~~~v~~~g~~~~~el~~ly~ 403 (895)
+.+.||++.+++|+..+.+.. .+++. +++|+++. ..+..++.++++.++|.|.|+ .+++..+|+
T Consensus 205 ~~~~K~~~~li~a~~~l~~~~-~~~~~l~i~G~g~~------------~~~~~~~~~~~~~~~v~~~g~--~~~~~~~~~ 269 (374)
T 2iw1_A 205 DFGRKGVDRSIEALASLPESL-RHNTLLFVVGQDKP------------RKFEALAEKLGVRSNVHFFSG--RNDVSELMA 269 (374)
T ss_dssp CTTTTTHHHHHHHHHTSCHHH-HHTEEEEEESSSCC------------HHHHHHHHHHTCGGGEEEESC--CSCHHHHHH
T ss_pred CHHHCCHHHHHHHHHHHHHCC-CCCEEEEEECCCCH------------HHHHHHHHHCCCCCCEEECCC--CCCHHHHHH
T ss_conf 410138899999999867604-88669999708987------------999999997398773797788--403899998
Q ss_pred HHHCCCCEEEECCCCCCCCHHHHHHHHCCCCEEECCCCCCCCCCCCCCCEEEEC-CCCHHHHHHHHHHHHHCHHHHHHHH
Q ss_conf 702189599924998998968999999299899838877311101288629809-9999999999999862999999999
Q 002665 404 LAAKTKGVFINPAFIEPFGLTLIEAAAYGLPIVATKNGGPVDIHRVLDNGLLVD-PHDQQSIADALLKLVSDKQLWERCR 482 (895)
Q Consensus 404 ~a~~~~Dv~v~ps~~Eg~gl~~~Ea~a~G~PVIat~~gg~~eii~~~~~g~lv~-p~d~~~la~aI~~ll~~~~~~~~~~ 482 (895)
.| |++++||..|+||++++|||+||+|||+++.|+..|++.++.+|++++ |.|+++++++|.+++++++.+++++
T Consensus 270 ~a----d~~v~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~e~i~~~~~g~~~~~~~~~~~l~~~i~~l~~~~~~~~~~~ 345 (374)
T 2iw1_A 270 AA----DLLLHPAYQEAAGIVLLEAITAGLPVLTTAVCGYAHYIADANCGTVIAEPFSQEQLNEVLRKALTQSPLRMAWA 345 (374)
T ss_dssp HC----SEEEECCSCCSSCHHHHHHHHHTCCEEEETTSTTTHHHHHHTCEEEECSSCCHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HC----CEEEECCCCCCCCCHHHHHHHCCCCEEEECCCCCHHHHCCCCCEEEECCCCCHHHHHHHHHHHHCCHHHHHHHH
T ss_conf 46----88983542477556999999779988982699804443069831996799998999999999971949999999
Q ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHH
Q ss_conf 9998998609989999999999997241
Q 002665 483 QNGLKNIHQFSWPEHCKSYLSRISSCKQ 510 (895)
Q Consensus 483 ~~~~~~v~~~s~~~~a~~~~~~l~~~~~ 510 (895)
+++++.+++|+|..+++.+.+.++..+.
T Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 373 (374)
T 2iw1_A 346 ENARHYADTQDLYSLPEKAADIITGGLD 373 (374)
T ss_dssp HHHHHHHHHSCCSCHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 9999999875389999999999998636
Done!