Query 002666
Match_columns 895
No_of_seqs 813 out of 4673
Neff 11.3
Searched_HMMs 46136
Date Fri Mar 29 04:39:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002666.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002666hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 1.4E-81 3.1E-86 735.7 74.9 682 189-895 48-730 (857)
2 PLN03077 Protein ECB2; Provisi 100.0 2.6E-78 5.6E-83 708.2 75.6 677 119-856 48-726 (857)
3 PLN03218 maturation of RBCL 1; 100.0 4.2E-64 9.1E-69 572.3 71.1 546 259-822 367-916 (1060)
4 PLN03218 maturation of RBCL 1; 100.0 7.5E-64 1.6E-68 570.3 70.5 546 294-857 367-916 (1060)
5 PLN03081 pentatricopeptide (PP 100.0 1.9E-58 4E-63 527.4 50.9 479 401-895 87-567 (697)
6 PLN03081 pentatricopeptide (PP 100.0 7.9E-57 1.7E-61 514.0 52.3 512 296-822 86-611 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 2.6E-48 5.6E-53 470.6 101.1 766 93-883 132-898 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 2.6E-47 5.7E-52 461.8 101.5 807 59-888 25-869 (899)
9 PRK11447 cellulose synthase su 100.0 6.3E-30 1.4E-34 307.0 81.8 565 269-848 119-738 (1157)
10 PRK11447 cellulose synthase su 100.0 4.5E-30 9.8E-35 308.3 77.6 643 94-779 36-739 (1157)
11 PRK09782 bacteriophage N4 rece 100.0 3.3E-26 7.2E-31 260.6 75.6 658 169-881 56-736 (987)
12 PRK09782 bacteriophage N4 rece 100.0 8.4E-26 1.8E-30 257.4 75.6 682 136-871 58-759 (987)
13 KOG2002 TPR-containing nuclear 100.0 2.1E-25 4.5E-30 235.4 67.7 688 122-853 41-801 (1018)
14 KOG2002 TPR-containing nuclear 100.0 5E-25 1.1E-29 232.5 67.4 581 278-869 146-763 (1018)
15 KOG4626 O-linked N-acetylgluco 100.0 4.6E-25 1E-29 220.3 40.3 463 404-885 51-519 (966)
16 KOG4626 O-linked N-acetylgluco 100.0 5.9E-25 1.3E-29 219.6 38.7 447 335-833 51-502 (966)
17 KOG2076 RNA polymerase III tra 99.9 2.9E-18 6.2E-23 180.9 62.2 664 200-880 147-890 (895)
18 TIGR00990 3a0801s09 mitochondr 99.9 9.8E-20 2.1E-24 205.7 55.0 255 589-851 307-572 (615)
19 TIGR00990 3a0801s09 mitochondr 99.9 6.5E-20 1.4E-24 207.2 52.3 258 623-887 306-573 (615)
20 KOG0495 HAT repeat protein [RN 99.9 2.7E-17 5.9E-22 166.4 63.8 607 206-850 265-880 (913)
21 KOG2076 RNA polymerase III tra 99.9 3.8E-17 8.3E-22 172.5 61.1 671 160-846 142-891 (895)
22 KOG0495 HAT repeat protein [RN 99.9 1.7E-16 3.6E-21 160.8 61.1 611 240-885 264-880 (913)
23 PRK11788 tetratricopeptide rep 99.9 2.2E-20 4.8E-25 200.8 35.4 302 234-541 42-353 (389)
24 PRK11788 tetratricopeptide rep 99.9 4.1E-20 9E-25 198.7 35.7 300 166-471 44-353 (389)
25 PRK15174 Vi polysaccharide exp 99.9 1.4E-18 3.1E-23 195.0 46.7 331 91-430 47-381 (656)
26 PRK15174 Vi polysaccharide exp 99.9 1.6E-18 3.4E-23 194.6 47.0 354 125-500 45-403 (656)
27 PRK10049 pgaA outer membrane p 99.9 6.5E-18 1.4E-22 194.2 49.4 406 226-640 14-456 (765)
28 PRK10049 pgaA outer membrane p 99.9 1.1E-17 2.5E-22 192.2 50.2 406 119-535 12-456 (765)
29 PRK14574 hmsH outer membrane p 99.9 3.4E-16 7.4E-21 175.5 56.2 466 367-864 34-525 (822)
30 PRK14574 hmsH outer membrane p 99.9 3.7E-16 8E-21 175.2 56.5 453 228-709 35-512 (822)
31 KOG2003 TPR repeat-containing 99.9 1.2E-17 2.5E-22 161.5 36.1 283 583-873 426-711 (840)
32 KOG2003 TPR repeat-containing 99.8 4.7E-16 1E-20 150.6 37.0 477 302-801 206-709 (840)
33 KOG1915 Cell cycle control pro 99.8 1.1E-13 2.3E-18 135.5 53.3 518 331-889 72-629 (677)
34 KOG1915 Cell cycle control pro 99.8 2.2E-13 4.8E-18 133.3 49.0 450 190-653 71-547 (677)
35 KOG3785 Uncharacterized conser 99.8 1.2E-13 2.6E-18 130.0 41.7 505 343-887 33-551 (557)
36 KOG0547 Translocase of outer m 99.7 1.9E-14 4.1E-19 141.4 34.9 221 620-850 335-566 (606)
37 KOG4422 Uncharacterized conser 99.7 1.1E-12 2.4E-17 126.9 42.1 318 204-571 127-463 (625)
38 KOG4422 Uncharacterized conser 99.7 3.6E-12 7.9E-17 123.3 43.5 357 262-640 207-590 (625)
39 KOG0547 Translocase of outer m 99.7 1.9E-13 4.2E-18 134.5 34.4 219 589-814 339-565 (606)
40 KOG4318 Bicoid mRNA stability 99.7 3E-11 6.4E-16 127.9 52.0 710 117-869 20-827 (1088)
41 KOG2047 mRNA splicing factor [ 99.7 1.3E-09 2.7E-14 111.7 61.6 319 519-844 360-717 (835)
42 KOG1155 Anaphase-promoting com 99.7 7.1E-12 1.5E-16 122.9 42.7 293 478-778 234-534 (559)
43 KOG1156 N-terminal acetyltrans 99.7 1.1E-10 2.4E-15 119.8 53.0 591 274-885 19-688 (700)
44 KOG1173 Anaphase-promoting com 99.7 1.8E-12 4E-17 130.4 39.1 502 333-866 17-533 (611)
45 KOG1155 Anaphase-promoting com 99.7 2E-12 4.3E-17 126.7 37.9 293 200-500 235-536 (559)
46 KOG1126 DNA-binding cell divis 99.7 1.7E-14 3.7E-19 148.1 24.9 288 171-469 333-624 (638)
47 KOG1126 DNA-binding cell divis 99.7 2.1E-14 4.5E-19 147.5 24.9 291 207-506 334-626 (638)
48 KOG1173 Anaphase-promoting com 99.7 3.3E-12 7.1E-17 128.6 39.6 504 227-758 16-529 (611)
49 KOG1156 N-terminal acetyltrans 99.7 3.6E-10 7.7E-15 116.1 53.2 457 132-603 17-509 (700)
50 KOG4318 Bicoid mRNA stability 99.7 4.5E-12 9.8E-17 133.9 40.5 176 684-867 462-641 (1088)
51 PF13429 TPR_15: Tetratricopep 99.6 1.1E-15 2.4E-20 154.8 13.0 261 616-884 13-276 (280)
52 PF13429 TPR_15: Tetratricopep 99.6 9.6E-16 2.1E-20 155.2 12.4 262 162-429 13-276 (280)
53 KOG0985 Vesicle coat protein c 99.6 1.5E-09 3.3E-14 116.2 58.1 203 610-847 1103-1305(1666)
54 KOG3785 Uncharacterized conser 99.6 9.4E-12 2E-16 117.5 37.2 450 202-684 32-497 (557)
55 KOG4162 Predicted calmodulin-b 99.6 2.2E-10 4.7E-15 120.1 50.1 127 719-850 653-783 (799)
56 PRK10747 putative protoheme IX 99.6 1.8E-12 3.8E-17 137.4 35.6 284 239-534 96-389 (398)
57 TIGR00540 hemY_coli hemY prote 99.6 2.2E-12 4.8E-17 137.6 34.9 289 238-533 95-397 (409)
58 TIGR00540 hemY_coli hemY prote 99.6 2.4E-12 5.1E-17 137.4 34.9 293 308-603 95-397 (409)
59 PRK10747 putative protoheme IX 99.6 5.1E-12 1.1E-16 133.9 37.0 283 310-603 97-388 (398)
60 KOG2047 mRNA splicing factor [ 99.6 1.5E-08 3.3E-13 104.0 61.8 624 189-873 24-711 (835)
61 COG2956 Predicted N-acetylgluc 99.6 3.3E-12 7.2E-17 119.4 30.6 270 309-587 47-326 (389)
62 KOG1127 TPR repeat-containing 99.6 1.8E-10 3.9E-15 123.5 47.2 576 276-877 472-1096(1238)
63 KOG1127 TPR repeat-containing 99.6 4.5E-10 9.7E-15 120.6 49.8 601 243-871 474-1124(1238)
64 KOG0985 Vesicle coat protein c 99.6 4.7E-08 1E-12 105.2 66.3 631 186-879 507-1243(1666)
65 COG2956 Predicted N-acetylgluc 99.6 2.1E-11 4.5E-16 114.2 32.1 297 589-893 48-355 (389)
66 KOG4162 Predicted calmodulin-b 99.5 2.2E-09 4.7E-14 112.8 47.8 430 330-779 321-782 (799)
67 COG3071 HemY Uncharacterized e 99.5 5.4E-11 1.2E-15 115.3 33.1 286 309-603 96-388 (400)
68 COG3071 HemY Uncharacterized e 99.5 5.3E-11 1.1E-15 115.4 32.7 288 239-535 96-390 (400)
69 KOG3616 Selective LIM binding 99.5 2.2E-08 4.8E-13 104.0 53.0 191 271-494 741-931 (1636)
70 KOG1174 Anaphase-promoting com 99.5 6E-09 1.3E-13 101.1 44.1 269 572-850 228-500 (564)
71 KOG3616 Selective LIM binding 99.5 1E-07 2.2E-12 99.2 55.5 220 374-635 713-932 (1636)
72 KOG3617 WD40 and TPR repeat-co 99.5 1.7E-08 3.7E-13 106.2 49.0 243 168-462 739-993 (1416)
73 KOG2376 Signal recognition par 99.5 1.2E-08 2.7E-13 103.9 45.8 462 304-811 19-516 (652)
74 KOG3617 WD40 and TPR repeat-co 99.5 1.2E-08 2.6E-13 107.3 45.5 228 99-360 741-995 (1416)
75 KOG1129 TPR repeat-containing 99.5 2.2E-11 4.7E-16 113.8 22.2 229 161-429 227-457 (478)
76 PRK12370 invasion protein regu 99.5 7.8E-11 1.7E-15 130.7 31.0 179 278-463 320-500 (553)
77 KOG2376 Signal recognition par 99.5 7.9E-09 1.7E-13 105.3 41.9 81 486-568 356-444 (652)
78 KOG1174 Anaphase-promoting com 99.4 1.5E-08 3.2E-13 98.5 41.2 288 239-535 208-500 (564)
79 KOG1840 Kinesin light chain [C 99.4 1.1E-10 2.4E-15 122.2 28.8 246 648-893 201-487 (508)
80 TIGR02521 type_IV_pilW type IV 99.4 1.2E-10 2.7E-15 115.5 27.3 198 681-883 31-230 (234)
81 PF12569 NARP1: NMDA receptor- 99.4 7.4E-09 1.6E-13 110.4 41.2 290 307-604 14-333 (517)
82 PRK12370 invasion protein regu 99.4 1E-10 2.2E-15 129.9 28.1 183 278-464 277-469 (553)
83 KOG1129 TPR repeat-containing 99.4 2.1E-11 4.5E-16 114.0 18.7 233 226-465 222-458 (478)
84 PF12569 NARP1: NMDA receptor- 99.4 9E-09 1.9E-13 109.7 41.3 291 201-499 13-333 (517)
85 TIGR02521 type_IV_pilW type IV 99.4 2.3E-10 5.1E-15 113.5 26.1 197 227-426 31-228 (234)
86 COG3063 PilF Tfp pilus assembl 99.4 6.7E-10 1.5E-14 99.5 23.8 197 683-885 37-236 (250)
87 KOG0548 Molecular co-chaperone 99.3 6.8E-09 1.5E-13 104.9 31.5 225 547-787 230-460 (539)
88 KOG4340 Uncharacterized conser 99.3 7.9E-09 1.7E-13 95.8 28.9 292 160-461 13-335 (459)
89 KOG0624 dsRNA-activated protei 99.3 7.4E-08 1.6E-12 91.4 35.8 315 470-814 37-369 (504)
90 KOG0548 Molecular co-chaperone 99.3 8E-09 1.7E-13 104.4 31.1 237 614-868 227-472 (539)
91 KOG1840 Kinesin light chain [C 99.3 1.3E-09 2.8E-14 114.4 26.3 236 193-428 200-477 (508)
92 PRK11189 lipoprotein NlpI; Pro 99.3 1.9E-09 4.1E-14 109.2 26.7 232 624-866 39-281 (296)
93 KOG0624 dsRNA-activated protei 99.3 2.6E-07 5.7E-12 87.7 38.3 329 366-780 37-370 (504)
94 COG3063 PilF Tfp pilus assembl 99.3 2.9E-09 6.2E-14 95.6 23.7 192 267-461 40-232 (250)
95 PRK11189 lipoprotein NlpI; Pro 99.2 6.1E-09 1.3E-13 105.5 27.2 221 274-502 38-267 (296)
96 KOG4340 Uncharacterized conser 99.2 2.4E-08 5.2E-13 92.6 27.8 290 233-531 16-335 (459)
97 cd05804 StaR_like StaR_like; a 99.2 1.3E-07 2.7E-12 100.4 34.4 202 119-324 3-213 (355)
98 KOG2053 Mitochondrial inherita 99.2 1.1E-05 2.5E-10 87.1 47.6 223 204-431 21-256 (932)
99 PF13041 PPR_2: PPR repeat fam 99.1 1.9E-10 4.1E-15 80.2 6.5 50 260-309 1-50 (50)
100 cd05804 StaR_like StaR_like; a 99.1 3.9E-07 8.5E-12 96.6 34.4 93 301-394 118-213 (355)
101 KOG2053 Mitochondrial inherita 99.1 4.6E-05 1E-09 82.6 46.7 537 272-848 19-606 (932)
102 KOG1125 TPR repeat-containing 99.1 1.1E-08 2.4E-13 104.4 18.5 223 656-887 295-529 (579)
103 KOG1914 mRNA cleavage and poly 99.0 4.5E-05 9.7E-10 77.8 43.2 424 365-814 18-500 (656)
104 PF13041 PPR_2: PPR repeat fam 99.0 1.1E-09 2.4E-14 76.3 6.6 49 295-343 1-49 (50)
105 KOG1125 TPR repeat-containing 99.0 8.8E-08 1.9E-12 97.9 21.1 224 306-533 294-525 (579)
106 PRK04841 transcriptional regul 99.0 2.7E-06 5.8E-11 102.7 37.4 376 124-502 343-762 (903)
107 PLN02789 farnesyltranstransfer 99.0 7.2E-07 1.6E-11 90.0 27.0 205 204-413 49-267 (320)
108 KOG1914 mRNA cleavage and poly 98.9 7.1E-05 1.5E-09 76.4 40.2 186 453-640 310-501 (656)
109 PRK04841 transcriptional regul 98.9 3.5E-06 7.5E-11 101.7 38.1 373 197-571 346-761 (903)
110 PF04733 Coatomer_E: Coatomer 98.9 3.9E-08 8.5E-13 97.7 17.3 63 366-428 200-263 (290)
111 PLN02789 farnesyltranstransfer 98.9 1.1E-06 2.5E-11 88.5 27.8 205 169-379 49-267 (320)
112 PF04733 Coatomer_E: Coatomer 98.9 1.2E-07 2.5E-12 94.4 18.5 250 201-465 10-265 (290)
113 KOG1128 Uncharacterized conser 98.9 5.6E-07 1.2E-11 94.6 23.2 213 267-499 403-615 (777)
114 KOG1128 Uncharacterized conser 98.8 7.4E-07 1.6E-11 93.8 23.1 226 643-890 395-621 (777)
115 PRK14720 transcript cleavage f 98.8 0.00016 3.4E-09 81.7 42.0 240 119-412 28-268 (906)
116 TIGR03302 OM_YfiO outer membra 98.8 9.6E-07 2.1E-11 87.1 20.9 185 679-884 31-231 (235)
117 KOG3060 Uncharacterized conser 98.8 8.4E-06 1.8E-10 74.7 23.9 174 683-862 54-231 (289)
118 COG5010 TadD Flp pilus assembl 98.7 3.1E-06 6.6E-11 78.5 20.5 156 685-845 70-226 (257)
119 PRK10370 formate-dependent nit 98.7 2.3E-06 4.9E-11 80.3 20.1 149 269-431 23-174 (198)
120 TIGR03302 OM_YfiO outer membra 98.7 1.9E-06 4.1E-11 85.0 20.6 185 227-430 33-232 (235)
121 COG5010 TadD Flp pilus assembl 98.7 3.5E-06 7.5E-11 78.1 20.0 157 267-426 71-227 (257)
122 KOG1070 rRNA processing protei 98.7 9.1E-06 2E-10 91.6 26.0 234 215-452 1447-1687(1710)
123 PRK15179 Vi polysaccharide bio 98.7 6E-06 1.3E-10 92.1 24.4 133 712-850 82-217 (694)
124 PRK15359 type III secretion sy 98.7 1.8E-06 3.9E-11 76.5 16.5 106 300-407 27-132 (144)
125 PRK15359 type III secretion sy 98.6 1.3E-06 2.8E-11 77.5 15.5 104 756-863 29-133 (144)
126 PRK15179 Vi polysaccharide bio 98.6 1.2E-05 2.7E-10 89.7 25.7 146 258-407 82-228 (694)
127 PRK10370 formate-dependent nit 98.6 6.4E-06 1.4E-10 77.3 20.1 124 275-401 52-178 (198)
128 KOG1070 rRNA processing protei 98.6 3.1E-05 6.8E-10 87.5 27.6 206 608-819 1455-1667(1710)
129 PRK14720 transcript cleavage f 98.6 2E-05 4.3E-10 88.7 26.0 219 261-517 30-268 (906)
130 COG4783 Putative Zn-dependent 98.6 7.7E-05 1.7E-09 75.7 27.0 186 190-400 272-458 (484)
131 KOG3081 Vesicle coat complex C 98.6 3.5E-05 7.6E-10 71.4 22.3 250 584-850 16-271 (299)
132 KOG3081 Vesicle coat complex C 98.6 7.3E-05 1.6E-09 69.4 24.0 152 303-464 114-270 (299)
133 KOG3060 Uncharacterized conser 98.5 6.9E-05 1.5E-09 69.0 23.1 188 171-362 26-221 (289)
134 PF12854 PPR_1: PPR repeat 98.5 2.6E-07 5.6E-12 57.4 4.2 32 292-323 2-33 (34)
135 COG4783 Putative Zn-dependent 98.5 3.9E-05 8.6E-10 77.7 21.8 138 691-850 316-454 (484)
136 PF07079 DUF1347: Protein of u 98.4 0.0028 6.1E-08 63.8 47.1 79 775-860 445-529 (549)
137 TIGR02552 LcrH_SycD type III s 98.4 1.2E-05 2.5E-10 71.2 15.2 110 319-430 5-114 (135)
138 PF12854 PPR_1: PPR repeat 98.4 5.8E-07 1.2E-11 55.8 3.8 33 257-289 2-34 (34)
139 COG4700 Uncharacterized protei 98.3 0.00016 3.6E-09 62.9 19.2 139 749-891 87-228 (251)
140 PF07079 DUF1347: Protein of u 98.3 0.0058 1.3E-07 61.6 46.1 204 577-791 299-530 (549)
141 KOG0550 Molecular chaperone (D 98.3 0.0004 8.8E-09 68.7 23.6 279 231-535 53-350 (486)
142 TIGR02552 LcrH_SycD type III s 98.3 3.2E-05 6.9E-10 68.4 15.3 96 752-850 18-114 (135)
143 KOG0550 Molecular chaperone (D 98.2 6.6E-05 1.4E-09 74.0 17.0 284 579-869 52-370 (486)
144 PRK15363 pathogenicity island 98.2 3.6E-05 7.8E-10 66.6 12.4 94 753-850 37-132 (157)
145 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 9.9E-05 2.1E-09 76.1 17.4 120 722-848 175-295 (395)
146 KOG1130 Predicted G-alpha GTPa 98.2 3.3E-05 7.2E-10 75.7 13.0 282 584-880 25-339 (639)
147 PF09976 TPR_21: Tetratricopep 98.1 0.00014 3.1E-09 64.8 16.1 114 310-425 24-142 (145)
148 KOG1130 Predicted G-alpha GTPa 98.1 3.3E-05 7.2E-10 75.7 12.4 284 549-848 25-342 (639)
149 PF09976 TPR_21: Tetratricopep 98.1 0.00012 2.5E-09 65.4 15.3 116 380-497 24-144 (145)
150 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 0.00013 2.8E-09 75.3 16.3 126 682-814 170-296 (395)
151 PF12895 Apc3: Anaphase-promot 98.0 9.8E-06 2.1E-10 64.2 5.8 80 799-880 2-82 (84)
152 KOG0553 TPR repeat-containing 98.0 0.00016 3.4E-09 68.8 13.7 97 688-790 88-186 (304)
153 COG4700 Uncharacterized protei 97.9 0.0019 4.2E-08 56.5 18.2 133 712-848 85-220 (251)
154 KOG2041 WD40 repeat protein [G 97.9 0.031 6.8E-07 59.4 30.1 206 397-637 688-904 (1189)
155 TIGR02795 tol_pal_ybgF tol-pal 97.9 0.00029 6.4E-09 60.6 13.8 96 753-850 4-105 (119)
156 TIGR02795 tol_pal_ybgF tol-pal 97.9 0.00026 5.7E-09 60.9 13.5 22 338-359 45-66 (119)
157 PRK10866 outer membrane biogen 97.9 0.0019 4.1E-08 62.9 20.4 177 687-883 38-239 (243)
158 COG3898 Uncharacterized membra 97.9 0.03 6.4E-07 55.5 32.4 248 589-850 133-392 (531)
159 KOG2041 WD40 repeat protein [G 97.9 0.032 6.8E-07 59.4 29.5 23 369-391 798-820 (1189)
160 PRK15363 pathogenicity island 97.9 0.0003 6.5E-09 61.0 12.3 91 338-429 41-131 (157)
161 cd00189 TPR Tetratricopeptide 97.8 0.00017 3.7E-09 59.1 10.5 91 756-849 5-96 (100)
162 PLN03088 SGT1, suppressor of 97.8 0.0005 1.1E-08 71.6 15.5 86 762-850 13-99 (356)
163 COG3898 Uncharacterized membra 97.8 0.046 9.9E-07 54.3 31.7 296 509-819 85-396 (531)
164 KOG0553 TPR repeat-containing 97.8 0.0003 6.5E-09 67.0 12.0 93 307-401 91-183 (304)
165 PF12895 Apc3: Anaphase-promot 97.8 4.2E-05 9.2E-10 60.6 5.7 47 311-357 3-50 (84)
166 PLN03088 SGT1, suppressor of 97.8 0.00054 1.2E-08 71.3 15.2 99 306-406 11-109 (356)
167 cd00189 TPR Tetratricopeptide 97.8 0.00039 8.5E-09 56.9 11.4 16 409-424 76-91 (100)
168 CHL00033 ycf3 photosystem I as 97.8 0.00054 1.2E-08 63.1 13.1 93 333-425 36-137 (168)
169 PRK10866 outer membrane biogen 97.8 0.0066 1.4E-07 59.2 21.0 181 227-427 32-238 (243)
170 PRK02603 photosystem I assembl 97.8 0.0013 2.8E-08 60.8 15.6 87 299-386 37-125 (172)
171 PRK02603 photosystem I assembl 97.7 0.0015 3.3E-08 60.3 15.8 88 264-352 37-126 (172)
172 CHL00033 ycf3 photosystem I as 97.7 0.00063 1.4E-08 62.6 12.8 91 753-845 37-137 (168)
173 PF14938 SNAP: Soluble NSF att 97.7 0.006 1.3E-07 61.5 20.8 125 722-847 120-263 (282)
174 TIGR00756 PPR pentatricopeptid 97.7 7E-05 1.5E-09 47.4 4.2 33 264-296 2-34 (35)
175 PF12688 TPR_5: Tetratrico pep 97.7 0.0012 2.6E-08 55.3 12.6 91 757-849 7-103 (120)
176 COG5107 RNA14 Pre-mRNA 3'-end 97.7 0.088 1.9E-06 53.3 38.2 80 365-446 40-119 (660)
177 COG4235 Cytochrome c biogenesi 97.6 0.0012 2.6E-08 63.5 13.7 116 732-851 138-257 (287)
178 PF12688 TPR_5: Tetratrico pep 97.6 0.003 6.4E-08 53.1 14.0 92 338-429 7-103 (120)
179 PF13525 YfiO: Outer membrane 97.6 0.0096 2.1E-07 56.5 19.4 171 687-877 11-199 (203)
180 PF13812 PPR_3: Pentatricopept 97.6 0.00012 2.5E-09 46.0 4.2 33 263-295 2-34 (34)
181 COG4235 Cytochrome c biogenesi 97.6 0.0035 7.5E-08 60.4 15.7 121 320-444 145-268 (287)
182 PRK10153 DNA-binding transcrip 97.6 0.0041 8.8E-08 67.7 18.4 61 752-814 421-481 (517)
183 KOG2796 Uncharacterized conser 97.6 0.039 8.5E-07 51.6 21.4 130 231-361 181-315 (366)
184 PF14938 SNAP: Soluble NSF att 97.5 0.0055 1.2E-07 61.8 17.8 22 199-220 42-63 (282)
185 COG4105 ComL DNA uptake lipopr 97.5 0.031 6.8E-07 52.8 21.0 179 682-881 36-229 (254)
186 PF05843 Suf: Suppressor of fo 97.5 0.0021 4.5E-08 64.5 14.6 130 299-430 3-136 (280)
187 PF13432 TPR_16: Tetratricopep 97.5 0.00029 6.3E-09 52.5 6.5 56 793-850 4-60 (65)
188 PRK10153 DNA-binding transcrip 97.5 0.0063 1.4E-07 66.3 18.8 136 712-851 333-483 (517)
189 PRK10803 tol-pal system protei 97.5 0.0014 3.1E-08 64.1 12.7 97 752-850 144-246 (263)
190 TIGR00756 PPR pentatricopeptid 97.5 0.00018 3.8E-09 45.5 4.4 33 753-785 2-34 (35)
191 PF05843 Suf: Suppressor of fo 97.5 0.0035 7.6E-08 62.9 15.7 129 683-814 3-135 (280)
192 PF13414 TPR_11: TPR repeat; P 97.5 0.0004 8.7E-09 52.5 6.9 63 786-850 3-67 (69)
193 PRK15331 chaperone protein Sic 97.5 0.0039 8.4E-08 54.5 13.2 89 760-850 46-134 (165)
194 PF10037 MRP-S27: Mitochondria 97.4 0.0017 3.6E-08 67.5 12.7 123 222-344 61-185 (429)
195 PF14559 TPR_19: Tetratricopep 97.4 0.00033 7.1E-09 52.8 5.8 52 797-850 2-54 (68)
196 PF13525 YfiO: Outer membrane 97.4 0.021 4.6E-07 54.2 19.4 63 229-291 7-71 (203)
197 KOG1258 mRNA processing protei 97.4 0.24 5.3E-06 52.7 34.9 187 610-800 296-489 (577)
198 PF13432 TPR_16: Tetratricopep 97.4 0.00074 1.6E-08 50.2 7.3 58 373-430 3-60 (65)
199 KOG2796 Uncharacterized conser 97.4 0.12 2.5E-06 48.6 23.8 142 299-442 179-325 (366)
200 PF13414 TPR_11: TPR repeat; P 97.4 0.00059 1.3E-08 51.6 6.7 64 297-361 3-67 (69)
201 PF10037 MRP-S27: Mitochondria 97.4 0.0026 5.6E-08 66.1 13.1 122 189-310 63-186 (429)
202 KOG1258 mRNA processing protei 97.4 0.28 6.1E-06 52.2 34.5 114 314-429 62-179 (577)
203 PF13812 PPR_3: Pentatricopept 97.4 0.00037 8E-09 43.6 4.4 32 753-784 3-34 (34)
204 PRK10803 tol-pal system protei 97.3 0.004 8.8E-08 61.0 13.2 86 727-814 154-245 (263)
205 PF08579 RPM2: Mitochondrial r 97.3 0.0038 8.2E-08 50.1 9.9 77 233-309 31-116 (120)
206 PF14559 TPR_19: Tetratricopep 97.3 0.0008 1.7E-08 50.7 6.1 52 379-430 3-54 (68)
207 KOG1941 Acetylcholine receptor 97.3 0.036 7.7E-07 54.3 18.1 165 683-847 85-272 (518)
208 PF04840 Vps16_C: Vps16, C-ter 97.2 0.12 2.7E-06 52.3 23.1 108 265-392 180-287 (319)
209 COG5107 RNA14 Pre-mRNA 3'-end 97.2 0.32 6.9E-06 49.5 39.8 136 645-786 396-535 (660)
210 PF01535 PPR: PPR repeat; Int 97.2 0.0005 1.1E-08 41.9 3.2 29 264-292 2-30 (31)
211 PF08579 RPM2: Mitochondrial r 97.1 0.0088 1.9E-07 48.1 10.6 76 686-761 30-114 (120)
212 KOG1538 Uncharacterized conser 97.1 0.11 2.4E-06 55.0 21.1 102 333-462 557-658 (1081)
213 PF13371 TPR_9: Tetratricopept 97.1 0.0033 7.2E-08 48.1 8.1 56 794-851 3-59 (73)
214 PF01535 PPR: PPR repeat; Int 97.0 0.00086 1.9E-08 40.8 3.5 29 334-362 2-30 (31)
215 COG0457 NrfG FOG: TPR repeat [ 96.9 0.47 1E-05 46.7 29.6 168 227-395 59-230 (291)
216 PRK15331 chaperone protein Sic 96.9 0.025 5.4E-07 49.6 12.6 86 343-429 48-133 (165)
217 COG1729 Uncharacterized protei 96.9 0.019 4.2E-07 54.7 12.6 102 753-857 144-250 (262)
218 KOG2610 Uncharacterized conser 96.9 0.026 5.7E-07 54.6 13.4 188 692-882 114-312 (491)
219 KOG2114 Vacuolar assembly/sort 96.9 0.98 2.1E-05 50.1 26.3 50 270-320 405-454 (933)
220 COG1729 Uncharacterized protei 96.9 0.029 6.3E-07 53.6 13.5 89 725-814 150-243 (262)
221 PF06239 ECSIT: Evolutionarily 96.9 0.021 4.7E-07 52.2 12.0 81 226-307 46-148 (228)
222 PF13281 DUF4071: Domain of un 96.8 0.32 7E-06 49.8 21.6 31 820-850 304-334 (374)
223 KOG0543 FKBP-type peptidyl-pro 96.8 0.035 7.6E-07 55.9 14.0 96 752-850 258-355 (397)
224 COG0457 NrfG FOG: TPR repeat [ 96.8 0.63 1.4E-05 45.8 30.6 223 624-850 36-265 (291)
225 PF13371 TPR_9: Tetratricopept 96.8 0.0078 1.7E-07 46.0 7.7 56 375-430 3-58 (73)
226 KOG1585 Protein required for f 96.7 0.26 5.6E-06 45.9 17.8 207 611-844 31-250 (308)
227 KOG1538 Uncharacterized conser 96.7 0.19 4.2E-06 53.3 18.8 53 369-429 749-801 (1081)
228 KOG0543 FKBP-type peptidyl-pro 96.7 0.032 6.9E-07 56.1 12.7 138 721-882 213-352 (397)
229 PF13424 TPR_12: Tetratricopep 96.6 0.0053 1.2E-07 47.6 6.0 62 787-848 6-73 (78)
230 PF13424 TPR_12: Tetratricopep 96.6 0.005 1.1E-07 47.8 5.8 61 753-813 7-73 (78)
231 KOG2280 Vacuolar assembly/sort 96.6 1.5 3.2E-05 48.1 30.9 108 719-845 687-794 (829)
232 PF10300 DUF3808: Protein of u 96.6 0.1 2.2E-06 56.6 17.7 121 765-887 247-378 (468)
233 PF06239 ECSIT: Evolutionarily 96.5 0.05 1.1E-06 49.9 12.1 105 259-382 44-153 (228)
234 PF03704 BTAD: Bacterial trans 96.5 0.12 2.7E-06 46.0 15.0 69 788-858 64-138 (146)
235 COG3118 Thioredoxin domain-con 96.5 0.31 6.7E-06 47.2 17.4 143 376-520 143-286 (304)
236 PF13281 DUF4071: Domain of un 96.5 0.57 1.2E-05 48.0 20.4 78 196-273 145-228 (374)
237 COG4105 ComL DNA uptake lipopr 96.4 0.95 2.1E-05 43.2 21.2 57 201-257 43-101 (254)
238 PRK11619 lytic murein transgly 96.3 2.7 5.8E-05 47.6 40.2 464 57-578 34-513 (644)
239 PF03704 BTAD: Bacterial trans 96.3 0.18 4E-06 44.9 14.7 71 369-439 64-139 (146)
240 KOG2114 Vacuolar assembly/sort 96.3 2.5 5.5E-05 47.1 28.5 176 267-462 339-516 (933)
241 KOG4555 TPR repeat-containing 96.3 0.096 2.1E-06 43.2 10.8 91 760-851 52-145 (175)
242 KOG1941 Acetylcholine receptor 96.2 0.32 6.9E-06 48.0 16.2 156 204-359 18-189 (518)
243 KOG2280 Vacuolar assembly/sort 96.2 2.6 5.5E-05 46.4 29.3 110 369-496 686-795 (829)
244 KOG1920 IkappaB kinase complex 96.2 1.1 2.4E-05 51.8 22.5 100 310-428 893-992 (1265)
245 COG3118 Thioredoxin domain-con 96.2 0.64 1.4E-05 45.1 17.8 144 306-451 143-287 (304)
246 KOG1550 Extracellular protein 96.2 3.1 6.6E-05 46.6 28.1 195 661-868 308-518 (552)
247 PRK11906 transcriptional regul 96.1 0.37 7.9E-06 50.2 17.1 116 313-430 274-401 (458)
248 PLN03098 LPA1 LOW PSII ACCUMUL 96.1 0.13 2.9E-06 53.2 13.9 62 298-360 76-140 (453)
249 PF10345 Cohesin_load: Cohesin 96.1 3.5 7.6E-05 47.0 41.4 186 103-289 38-252 (608)
250 PF13428 TPR_14: Tetratricopep 96.1 0.015 3.2E-07 38.8 4.8 40 823-863 3-42 (44)
251 PLN03098 LPA1 LOW PSII ACCUMUL 96.1 0.031 6.7E-07 57.7 9.2 98 749-852 73-176 (453)
252 PRK11906 transcriptional regul 96.0 0.41 8.8E-06 49.9 16.8 81 419-501 322-402 (458)
253 PF04184 ST7: ST7 protein; In 96.0 0.68 1.5E-05 48.3 18.1 177 623-814 180-374 (539)
254 COG4785 NlpI Lipoprotein NlpI, 95.9 1.2 2.7E-05 40.8 17.3 181 239-429 77-265 (297)
255 KOG2610 Uncharacterized conser 95.7 0.22 4.9E-06 48.5 12.7 151 622-777 114-273 (491)
256 PF10300 DUF3808: Protein of u 95.7 0.7 1.5E-05 50.3 18.3 118 694-814 246-375 (468)
257 PF10345 Cohesin_load: Cohesin 95.7 5.2 0.00011 45.7 44.7 182 211-393 40-251 (608)
258 KOG4555 TPR repeat-containing 95.7 0.15 3.2E-06 42.1 9.7 92 375-466 51-145 (175)
259 PF13512 TPR_18: Tetratricopep 95.6 0.38 8.3E-06 41.4 12.4 59 271-329 19-79 (142)
260 COG4649 Uncharacterized protei 95.6 1.5 3.3E-05 38.7 15.8 128 692-819 69-200 (221)
261 PF13428 TPR_14: Tetratricopep 95.5 0.029 6.3E-07 37.4 4.5 40 369-408 3-42 (44)
262 PF08631 SPO22: Meiosis protei 95.4 3.4 7.4E-05 41.5 25.2 103 193-297 85-192 (278)
263 COG1747 Uncharacterized N-term 95.4 4.3 9.3E-05 42.6 21.9 175 680-863 65-246 (711)
264 PF04184 ST7: ST7 protein; In 95.4 1.5 3.1E-05 46.0 17.6 58 756-813 264-322 (539)
265 KOG4234 TPR repeat-containing 95.3 0.19 4.1E-06 45.1 9.9 104 757-864 101-210 (271)
266 PF04840 Vps16_C: Vps16, C-ter 95.3 4 8.7E-05 41.6 29.8 102 618-739 184-285 (319)
267 KOG1920 IkappaB kinase complex 95.3 8.2 0.00018 45.2 25.6 21 232-252 682-702 (1265)
268 PF08631 SPO22: Meiosis protei 95.3 3.8 8.2E-05 41.2 26.1 163 683-848 86-273 (278)
269 PRK15180 Vi polysaccharide bio 95.2 4.4 9.6E-05 41.9 28.6 126 376-503 298-423 (831)
270 COG4649 Uncharacterized protei 95.2 2 4.4E-05 37.9 16.0 89 306-394 103-194 (221)
271 COG4785 NlpI Lipoprotein NlpI, 95.1 2.6 5.6E-05 38.8 16.3 31 471-501 237-267 (297)
272 KOG4234 TPR repeat-containing 95.1 0.79 1.7E-05 41.4 12.9 95 722-821 101-201 (271)
273 KOG1550 Extracellular protein 95.0 8 0.00017 43.3 27.4 176 243-431 228-427 (552)
274 KOG1585 Protein required for f 94.9 3.5 7.5E-05 38.8 21.4 206 577-809 32-250 (308)
275 PF13512 TPR_18: Tetratricopep 94.8 0.88 1.9E-05 39.2 12.1 83 369-451 12-97 (142)
276 PF13431 TPR_17: Tetratricopep 94.6 0.045 9.7E-07 33.9 3.0 30 810-841 3-33 (34)
277 smart00299 CLH Clathrin heavy 94.3 2.9 6.4E-05 36.8 15.4 84 686-777 12-95 (140)
278 smart00299 CLH Clathrin heavy 94.3 3.5 7.5E-05 36.3 15.8 40 268-308 13-52 (140)
279 PF04053 Coatomer_WDAD: Coatom 94.2 1.2 2.7E-05 47.5 14.8 128 649-809 298-425 (443)
280 PF04053 Coatomer_WDAD: Coatom 94.1 1.6 3.4E-05 46.8 15.0 20 370-389 298-317 (443)
281 PF12921 ATP13: Mitochondrial 93.8 1.4 3.1E-05 37.5 11.6 78 228-305 3-96 (126)
282 KOG2396 HAT (Half-A-TPR) repea 93.8 10 0.00022 39.9 39.3 100 748-850 456-559 (568)
283 COG2976 Uncharacterized protei 93.8 2.1 4.6E-05 38.8 12.7 129 716-851 54-189 (207)
284 PF12921 ATP13: Mitochondrial 93.6 1.4 3E-05 37.6 11.1 29 750-778 1-29 (126)
285 PF13176 TPR_7: Tetratricopept 93.6 0.15 3.2E-06 32.1 4.0 26 823-848 1-26 (36)
286 COG2909 MalT ATP-dependent tra 93.3 18 0.00039 41.2 29.1 51 694-744 471-525 (894)
287 PF09205 DUF1955: Domain of un 93.2 4.5 9.7E-05 34.0 14.4 62 371-432 90-151 (161)
288 COG2976 Uncharacterized protei 93.2 6.6 0.00014 35.8 15.2 116 699-816 70-189 (207)
289 PF13431 TPR_17: Tetratricopep 93.1 0.096 2.1E-06 32.4 2.5 32 390-421 2-33 (34)
290 KOG2062 26S proteasome regulat 93.1 17 0.00037 40.3 42.2 120 691-814 511-634 (929)
291 KOG0890 Protein kinase of the 93.1 34 0.00074 43.8 28.0 321 511-853 1388-1734(2382)
292 PF09205 DUF1955: Domain of un 92.6 5.6 0.00012 33.5 14.4 137 344-502 14-151 (161)
293 KOG2062 26S proteasome regulat 92.4 21 0.00045 39.7 38.1 125 721-849 506-634 (929)
294 COG0790 FOG: TPR repeat, SEL1 92.1 15 0.00033 37.3 23.4 83 623-711 53-143 (292)
295 KOG4648 Uncharacterized conser 92.0 1.1 2.5E-05 43.9 9.2 95 722-820 103-197 (536)
296 COG3629 DnrI DNA-binding trans 91.8 1.8 4E-05 42.4 10.6 61 753-814 155-215 (280)
297 PF09613 HrpB1_HrpK: Bacterial 91.7 6 0.00013 35.0 12.5 19 796-814 54-72 (160)
298 KOG4648 Uncharacterized conser 91.7 0.89 1.9E-05 44.6 8.2 55 305-360 105-159 (536)
299 KOG3941 Intermediate in Toll s 91.6 1.4 3.1E-05 42.1 9.1 31 281-311 142-172 (406)
300 KOG1464 COP9 signalosome, subu 91.5 13 0.00029 35.5 18.9 188 589-777 40-257 (440)
301 PF00515 TPR_1: Tetratricopept 91.5 0.48 1E-05 29.2 4.3 26 789-814 4-29 (34)
302 PF13176 TPR_7: Tetratricopept 91.5 0.46 1E-05 29.8 4.2 27 788-814 1-27 (36)
303 PF10602 RPN7: 26S proteasome 91.4 7.1 0.00015 35.9 13.6 62 299-360 38-101 (177)
304 PRK09687 putative lyase; Provi 91.3 17 0.00038 36.4 28.4 233 609-866 35-277 (280)
305 PF07719 TPR_2: Tetratricopept 91.0 0.55 1.2E-05 28.8 4.3 26 824-849 4-29 (34)
306 COG3629 DnrI DNA-binding trans 91.0 2.2 4.7E-05 41.9 10.2 77 369-445 155-236 (280)
307 PF10602 RPN7: 26S proteasome 91.0 2.8 6.2E-05 38.5 10.6 62 718-779 38-101 (177)
308 KOG1586 Protein required for f 90.9 14 0.00031 34.7 22.9 96 722-819 119-226 (288)
309 PF09613 HrpB1_HrpK: Bacterial 90.9 11 0.00023 33.5 13.2 51 379-429 22-72 (160)
310 PF02259 FAT: FAT domain; Int 90.7 24 0.00053 37.0 23.5 62 368-429 147-212 (352)
311 KOG3941 Intermediate in Toll s 90.3 2.2 4.7E-05 40.9 9.1 88 276-382 86-173 (406)
312 PF07719 TPR_2: Tetratricopept 90.0 0.8 1.7E-05 28.1 4.4 28 787-814 2-29 (34)
313 PF13170 DUF4003: Protein of u 89.8 24 0.00053 35.6 19.6 130 628-759 79-225 (297)
314 PF06552 TOM20_plant: Plant sp 89.7 5.7 0.00012 35.7 10.7 73 698-780 52-136 (186)
315 KOG1464 COP9 signalosome, subu 89.0 22 0.00048 34.1 19.7 190 623-812 39-257 (440)
316 PF00515 TPR_1: Tetratricopept 88.9 1 2.2E-05 27.7 4.3 26 719-744 4-29 (34)
317 KOG4642 Chaperone-dependent E3 88.9 8.2 0.00018 36.4 11.4 85 725-813 19-105 (284)
318 PF13170 DUF4003: Protein of u 88.3 31 0.00066 34.9 20.3 85 210-296 80-177 (297)
319 COG0790 FOG: TPR repeat, SEL1 88.1 32 0.0007 34.9 23.4 84 588-677 53-144 (292)
320 PF11207 DUF2989: Protein of u 87.9 6.4 0.00014 36.3 10.1 72 803-875 123-197 (203)
321 TIGR03504 FimV_Cterm FimV C-te 87.8 1.2 2.7E-05 29.3 4.1 26 826-851 4-29 (44)
322 PF06552 TOM20_plant: Plant sp 87.7 5.3 0.00011 36.0 9.2 108 697-815 7-136 (186)
323 PF13174 TPR_6: Tetratricopept 87.3 1 2.3E-05 27.3 3.6 27 824-850 3-29 (33)
324 TIGR02561 HrpB1_HrpK type III 87.1 8.4 0.00018 33.5 9.7 93 762-858 21-114 (153)
325 KOG3364 Membrane protein invol 86.8 5.9 0.00013 33.5 8.3 67 783-850 29-100 (149)
326 PF09986 DUF2225: Uncharacteri 86.3 14 0.0003 35.2 12.0 48 804-851 143-195 (214)
327 PF13374 TPR_10: Tetratricopep 85.8 1.8 3.9E-05 28.1 4.3 27 823-849 4-30 (42)
328 KOG1586 Protein required for f 85.6 33 0.00071 32.4 19.6 20 447-466 165-184 (288)
329 PF02259 FAT: FAT domain; Int 85.4 52 0.0011 34.5 24.8 65 226-290 145-212 (352)
330 KOG0276 Vesicle coat complex C 85.2 20 0.00043 38.8 13.2 154 132-325 596-749 (794)
331 KOG2396 HAT (Half-A-TPR) repea 84.9 58 0.0013 34.7 41.1 99 713-814 456-558 (568)
332 PF13181 TPR_8: Tetratricopept 84.9 1.6 3.5E-05 26.7 3.6 26 789-814 4-29 (34)
333 KOG2471 TPR repeat-containing 84.7 58 0.0013 34.5 16.7 43 517-559 28-70 (696)
334 COG1747 Uncharacterized N-term 84.6 60 0.0013 34.6 25.2 180 226-412 65-250 (711)
335 cd00923 Cyt_c_Oxidase_Va Cytoc 84.4 5.9 0.00013 31.2 6.8 61 347-407 22-82 (103)
336 PF08424 NRDE-2: NRDE-2, neces 84.0 53 0.0011 33.9 16.1 79 349-428 48-129 (321)
337 PF11207 DUF2989: Protein of u 83.8 10 0.00023 35.0 9.4 74 768-842 123-199 (203)
338 COG5159 RPN6 26S proteasome re 83.8 22 0.00048 34.4 11.7 57 721-777 8-71 (421)
339 KOG3364 Membrane protein invol 83.3 28 0.0006 29.7 11.3 70 748-820 29-103 (149)
340 KOG2066 Vacuolar assembly/sort 82.8 91 0.002 35.3 27.0 76 374-453 363-440 (846)
341 COG2909 MalT ATP-dependent tra 82.6 1E+02 0.0022 35.7 32.1 225 587-811 426-684 (894)
342 PF13181 TPR_8: Tetratricopept 82.5 3.4 7.4E-05 25.2 4.3 28 823-850 3-30 (34)
343 PF04097 Nic96: Nup93/Nic96; 82.4 98 0.0021 35.4 19.7 29 472-500 325-356 (613)
344 PF07721 TPR_4: Tetratricopept 82.1 2 4.2E-05 24.5 2.8 17 827-843 7-23 (26)
345 PF13174 TPR_6: Tetratricopept 82.0 1.9 4.1E-05 26.1 2.9 13 414-426 13-25 (33)
346 PF13374 TPR_10: Tetratricopep 81.8 3.7 8.1E-05 26.5 4.6 28 787-814 3-30 (42)
347 TIGR02561 HrpB1_HrpK type III 81.8 35 0.00076 29.8 12.4 52 379-430 22-73 (153)
348 KOG2066 Vacuolar assembly/sort 81.7 1E+02 0.0022 35.0 28.4 102 269-379 363-467 (846)
349 PF02284 COX5A: Cytochrome c o 81.4 8 0.00017 30.9 6.6 59 350-408 28-86 (108)
350 KOG4570 Uncharacterized conser 81.2 41 0.00088 33.4 12.5 98 645-744 63-163 (418)
351 KOG0890 Protein kinase of the 80.7 1.9E+02 0.0042 37.7 37.1 152 232-391 1388-1542(2382)
352 PF07035 Mic1: Colon cancer-as 80.2 45 0.00098 30.1 15.8 101 213-323 15-115 (167)
353 KOG4570 Uncharacterized conser 80.2 12 0.00025 36.9 8.7 34 151-184 58-91 (418)
354 PF04097 Nic96: Nup93/Nic96; 80.0 1.2E+02 0.0025 34.8 24.6 45 404-449 114-158 (613)
355 KOG4507 Uncharacterized conser 79.2 6.4 0.00014 42.0 7.2 152 294-447 568-721 (886)
356 KOG0276 Vesicle coat complex C 79.1 40 0.00088 36.6 12.8 150 309-497 598-747 (794)
357 cd00923 Cyt_c_Oxidase_Va Cytoc 78.9 15 0.00033 29.1 7.3 47 768-814 24-70 (103)
358 PRK09687 putative lyase; Provi 78.8 76 0.0016 31.9 29.6 232 574-830 35-276 (280)
359 PF08424 NRDE-2: NRDE-2, neces 77.6 91 0.002 32.1 15.8 78 419-498 49-129 (321)
360 KOG2063 Vacuolar assembly/sort 77.5 1.6E+02 0.0034 34.8 20.4 26 230-255 507-532 (877)
361 PF02284 COX5A: Cytochrome c o 77.0 14 0.00031 29.6 6.8 47 769-815 28-74 (108)
362 PF07721 TPR_4: Tetratricopept 76.6 3.9 8.3E-05 23.3 2.8 24 857-880 2-25 (26)
363 COG4455 ImpE Protein of avirul 76.4 18 0.00038 33.7 8.2 73 753-828 3-79 (273)
364 KOG2063 Vacuolar assembly/sort 76.2 1.7E+02 0.0036 34.5 20.7 115 194-308 506-637 (877)
365 KOG4642 Chaperone-dependent E3 76.2 13 0.00029 35.0 7.5 118 759-880 18-141 (284)
366 COG4455 ImpE Protein of avirul 74.7 16 0.00035 34.0 7.5 58 372-429 6-63 (273)
367 PF13929 mRNA_stabil: mRNA sta 74.4 95 0.0021 30.8 14.1 136 172-307 143-288 (292)
368 PF07575 Nucleopor_Nup85: Nup8 74.1 1.4E+02 0.003 33.9 16.8 26 262-288 149-174 (566)
369 PF09986 DUF2225: Uncharacteri 74.0 83 0.0018 30.0 12.7 67 754-820 121-199 (214)
370 KOG1308 Hsp70-interacting prot 73.8 4.7 0.0001 40.1 4.3 119 727-850 125-244 (377)
371 PF14853 Fis1_TPR_C: Fis1 C-te 73.4 19 0.00041 25.1 6.0 27 824-850 4-30 (53)
372 PF07035 Mic1: Colon cancer-as 73.0 73 0.0016 28.8 16.7 102 701-812 14-115 (167)
373 KOG4507 Uncharacterized conser 73.0 30 0.00065 37.4 10.0 89 481-570 617-705 (886)
374 PF10579 Rapsyn_N: Rapsyn N-te 72.9 9.7 0.00021 28.8 4.7 46 798-843 18-65 (80)
375 TIGR03504 FimV_Cterm FimV C-te 72.8 8.8 0.00019 25.4 4.1 26 791-816 4-29 (44)
376 COG3947 Response regulator con 71.2 1.1E+02 0.0024 30.2 16.2 57 405-462 283-339 (361)
377 KOG0545 Aryl-hydrocarbon recep 70.9 1E+02 0.0022 29.6 13.6 116 228-362 179-294 (329)
378 KOG1308 Hsp70-interacting prot 70.5 3 6.4E-05 41.5 2.2 95 763-860 126-221 (377)
379 PF14561 TPR_20: Tetratricopep 70.5 52 0.0011 26.1 9.0 53 820-872 21-74 (90)
380 COG3947 Response regulator con 70.1 1.2E+02 0.0026 30.0 17.7 54 653-707 286-339 (361)
381 PF14853 Fis1_TPR_C: Fis1 C-te 69.7 17 0.00037 25.3 5.2 30 791-822 6-35 (53)
382 KOG0545 Aryl-hydrocarbon recep 69.2 73 0.0016 30.5 10.5 116 297-430 178-293 (329)
383 PRK11619 lytic murein transgly 68.9 2.2E+02 0.0048 32.7 42.5 249 381-648 255-513 (644)
384 KOG0551 Hsp90 co-chaperone CNS 68.6 88 0.0019 31.5 11.4 91 721-813 86-180 (390)
385 PRK10941 hypothetical protein; 67.7 60 0.0013 32.2 10.5 59 790-850 185-244 (269)
386 smart00028 TPR Tetratricopepti 67.6 12 0.00025 21.7 4.0 20 793-812 8-27 (34)
387 KOG0403 Neoplastic transformat 67.6 1.7E+02 0.0037 30.8 27.5 24 405-428 218-241 (645)
388 PF10579 Rapsyn_N: Rapsyn N-te 66.3 22 0.00048 27.0 5.4 54 831-884 16-71 (80)
389 KOG2471 TPR repeat-containing 66.1 1.9E+02 0.0041 30.9 28.1 107 585-693 249-381 (696)
390 PF04190 DUF410: Protein of un 65.5 1.5E+02 0.0032 29.4 20.0 82 260-361 88-170 (260)
391 PF04190 DUF410: Protein of un 65.5 1.5E+02 0.0032 29.4 18.1 25 785-809 89-113 (260)
392 PF00637 Clathrin: Region in C 65.4 3.2 6.9E-05 36.7 1.2 54 268-321 13-66 (143)
393 PF07163 Pex26: Pex26 protein; 65.1 84 0.0018 30.9 10.3 87 756-844 88-181 (309)
394 PF14561 TPR_20: Tetratricopep 64.7 63 0.0014 25.6 8.2 36 395-430 16-51 (90)
395 PF00637 Clathrin: Region in C 64.0 2.8 6.1E-05 37.1 0.6 53 234-286 14-66 (143)
396 TIGR02508 type_III_yscG type I 63.2 72 0.0016 25.6 7.8 50 796-851 49-98 (115)
397 PF12862 Apc5: Anaphase-promot 63.1 46 0.001 26.6 7.4 25 826-850 46-70 (94)
398 PF07163 Pex26: Pex26 protein; 62.8 82 0.0018 30.9 9.8 88 233-320 89-181 (309)
399 PF07575 Nucleopor_Nup85: Nup8 62.6 2.7E+02 0.0059 31.5 20.4 25 332-357 149-173 (566)
400 KOG0551 Hsp90 co-chaperone CNS 61.9 77 0.0017 31.9 9.7 101 748-850 76-182 (390)
401 KOG2297 Predicted translation 61.4 1.8E+02 0.0039 29.0 16.4 18 404-421 324-341 (412)
402 KOG4077 Cytochrome c oxidase, 60.8 49 0.0011 27.8 6.9 58 350-407 67-124 (149)
403 KOG4521 Nuclear pore complex, 59.6 2E+02 0.0044 34.5 13.7 79 719-804 986-1072(1480)
404 PRK15180 Vi polysaccharide bio 59.2 2.5E+02 0.0054 29.9 28.5 90 271-362 332-421 (831)
405 PF10255 Paf67: RNA polymerase 59.2 1.3E+02 0.0029 31.8 11.6 59 790-848 126-191 (404)
406 PF04910 Tcf25: Transcriptiona 58.9 2.4E+02 0.0052 29.7 18.0 31 224-254 37-67 (360)
407 PF12862 Apc5: Anaphase-promot 58.8 44 0.00095 26.8 6.6 60 832-891 9-76 (94)
408 KOG0376 Serine-threonine phosp 58.4 21 0.00046 37.6 5.7 94 723-822 11-106 (476)
409 KOG4077 Cytochrome c oxidase, 58.3 73 0.0016 26.8 7.5 43 772-814 70-112 (149)
410 KOG0376 Serine-threonine phosp 57.9 26 0.00057 37.0 6.3 53 308-361 15-67 (476)
411 smart00386 HAT HAT (Half-A-TPR 56.9 23 0.00049 20.9 3.7 27 382-408 2-28 (33)
412 KOG2300 Uncharacterized conser 56.6 2.8E+02 0.0061 29.8 40.9 160 727-886 334-515 (629)
413 PF09670 Cas_Cas02710: CRISPR- 56.4 1E+02 0.0022 32.6 10.6 60 126-186 135-198 (379)
414 TIGR02508 type_III_yscG type I 56.3 1.1E+02 0.0023 24.8 7.8 11 103-113 22-32 (115)
415 PF13929 mRNA_stabil: mRNA sta 55.3 2.3E+02 0.0049 28.3 15.9 135 208-342 144-288 (292)
416 KOG2659 LisH motif-containing 54.4 2E+02 0.0044 27.4 12.6 96 679-776 24-128 (228)
417 KOG4279 Serine/threonine prote 54.3 2.9E+02 0.0063 31.4 13.2 70 764-835 256-334 (1226)
418 PF00244 14-3-3: 14-3-3 protei 53.9 1.2E+02 0.0026 29.5 9.9 17 834-850 182-198 (236)
419 PF11846 DUF3366: Domain of un 53.3 37 0.00081 31.8 6.3 34 817-850 140-173 (193)
420 PF00244 14-3-3: 14-3-3 protei 52.9 2.3E+02 0.0049 27.6 14.6 39 653-691 8-46 (236)
421 PF14689 SPOB_a: Sensor_kinase 52.7 30 0.00066 25.0 4.2 20 827-846 29-48 (62)
422 PF11817 Foie-gras_1: Foie gra 51.7 52 0.0011 32.4 7.2 60 823-882 180-244 (247)
423 KOG0128 RNA-binding protein SA 51.5 4.4E+02 0.0096 30.5 36.0 97 366-464 112-218 (881)
424 PF02184 HAT: HAT (Half-A-TPR) 51.5 35 0.00077 20.7 3.5 26 801-828 2-27 (32)
425 KOG0530 Protein farnesyltransf 50.8 2.5E+02 0.0054 27.5 18.7 83 697-781 94-177 (318)
426 smart00777 Mad3_BUB1_I Mad3/BU 50.3 1.6E+02 0.0035 25.1 9.2 42 839-880 81-123 (125)
427 PF07720 TPR_3: Tetratricopept 49.2 39 0.00084 21.2 3.7 23 823-845 3-25 (36)
428 PF08311 Mad3_BUB1_I: Mad3/BUB 48.2 1.8E+02 0.0038 24.9 9.0 43 769-811 81-124 (126)
429 PF09670 Cas_Cas02710: CRISPR- 48.0 3.2E+02 0.007 28.9 12.7 53 656-709 141-197 (379)
430 KOG0687 26S proteasome regulat 46.5 3.3E+02 0.0072 27.6 15.3 67 159-225 106-177 (393)
431 COG4976 Predicted methyltransf 46.4 56 0.0012 30.9 5.8 51 762-814 6-57 (287)
432 PRK10941 hypothetical protein; 45.8 2.3E+02 0.0049 28.3 10.4 58 372-429 186-243 (269)
433 PF09477 Type_III_YscG: Bacter 45.7 1.7E+02 0.0037 24.0 8.6 17 274-290 81-97 (116)
434 COG5187 RPN7 26S proteasome re 45.2 1.3E+02 0.0027 29.7 8.0 93 786-878 115-214 (412)
435 COG5159 RPN6 26S proteasome re 45.1 3.2E+02 0.0069 27.0 22.4 95 686-780 130-235 (421)
436 PF11846 DUF3366: Domain of un 44.7 1.1E+02 0.0023 28.7 7.9 33 782-814 140-172 (193)
437 COG4259 Uncharacterized protei 44.1 1.6E+02 0.0034 23.6 6.9 25 789-813 75-99 (121)
438 PF14689 SPOB_a: Sensor_kinase 42.6 1.1E+02 0.0023 22.2 5.8 51 837-889 6-56 (62)
439 KOG2422 Uncharacterized conser 42.5 5.1E+02 0.011 28.7 16.9 48 624-672 251-310 (665)
440 PF15297 CKAP2_C: Cytoskeleton 42.4 2.5E+02 0.0053 28.8 9.9 44 823-866 142-185 (353)
441 KOG2581 26S proteasome regulat 41.6 4.4E+02 0.0096 27.7 13.0 144 715-865 125-289 (493)
442 cd00280 TRFH Telomeric Repeat 41.5 1.8E+02 0.0039 26.6 7.9 24 406-429 116-139 (200)
443 PF04910 Tcf25: Transcriptiona 41.2 4.5E+02 0.0098 27.6 22.1 124 189-325 37-167 (360)
444 KOG0687 26S proteasome regulat 40.5 4.1E+02 0.0089 27.0 15.4 20 625-644 36-55 (393)
445 PRK12798 chemotaxis protein; R 40.3 4.8E+02 0.01 27.7 22.0 230 618-858 88-332 (421)
446 PF11663 Toxin_YhaV: Toxin wit 40.3 30 0.00064 29.5 2.8 26 831-856 105-130 (140)
447 PF12968 DUF3856: Domain of Un 40.1 2.3E+02 0.0049 23.9 12.9 89 798-886 21-130 (144)
448 KOG4521 Nuclear pore complex, 38.8 8.1E+02 0.018 29.9 15.6 55 369-423 985-1043(1480)
449 COG0735 Fur Fe2+/Zn2+ uptake r 38.3 1.9E+02 0.004 25.6 7.8 61 182-243 11-71 (145)
450 KOG1839 Uncharacterized protei 38.2 4.3E+02 0.0093 32.5 12.5 155 690-844 941-1122(1236)
451 PF15297 CKAP2_C: Cytoskeleton 37.4 3E+02 0.0065 28.3 9.6 62 279-342 120-185 (353)
452 PF10366 Vps39_1: Vacuolar sor 36.4 1.7E+02 0.0037 24.2 6.8 26 404-429 42-67 (108)
453 KOG0686 COP9 signalosome, subu 36.4 5.4E+02 0.012 27.1 15.4 95 228-324 151-256 (466)
454 PF11817 Foie-gras_1: Foie gra 36.2 1.8E+02 0.0039 28.6 8.2 57 791-847 183-244 (247)
455 COG4259 Uncharacterized protei 35.9 2.3E+02 0.005 22.8 6.8 46 805-850 56-101 (121)
456 PF11123 DNA_Packaging_2: DNA 35.4 1.2E+02 0.0026 22.6 4.8 33 382-414 12-44 (82)
457 PF10155 DUF2363: Uncharacteri 35.3 2.9E+02 0.0062 23.7 9.6 40 215-254 86-125 (126)
458 COG5187 RPN7 26S proteasome re 35.1 4.7E+02 0.01 26.0 14.7 66 682-747 116-186 (412)
459 COG2178 Predicted RNA-binding 35.0 3.8E+02 0.0081 24.9 10.0 18 272-289 39-56 (204)
460 KOG2908 26S proteasome regulat 34.8 5.2E+02 0.011 26.5 16.8 191 76-270 61-273 (380)
461 PRK12798 chemotaxis protein; R 34.7 5.9E+02 0.013 27.1 24.4 190 623-819 124-328 (421)
462 PF12554 MOZART1: Mitotic-spin 34.3 90 0.0019 21.2 3.8 43 57-99 5-47 (48)
463 KOG0991 Replication factor C, 33.4 4.5E+02 0.0097 25.3 13.5 137 612-757 131-279 (333)
464 cd00280 TRFH Telomeric Repeat 32.9 3.3E+02 0.0072 25.0 8.2 22 793-814 118-139 (200)
465 PF03745 DUF309: Domain of unk 32.6 1.7E+02 0.0036 21.3 5.4 47 762-808 10-61 (62)
466 COG0735 Fur Fe2+/Zn2+ uptake r 32.5 2.1E+02 0.0046 25.2 7.2 59 811-870 11-69 (145)
467 PRK14700 recombination factor 32.4 5.4E+02 0.012 26.0 10.5 100 610-709 122-229 (300)
468 KOG3824 Huntingtin interacting 32.3 1.1E+02 0.0024 30.3 5.6 50 763-814 128-178 (472)
469 KOG0686 COP9 signalosome, subu 32.3 6.2E+02 0.014 26.7 14.7 61 264-325 152-215 (466)
470 PRK13184 pknD serine/threonine 32.0 1E+03 0.022 29.0 29.0 148 688-845 742-895 (932)
471 PF11848 DUF3368: Domain of un 30.9 1.7E+02 0.0037 19.8 5.2 28 274-301 14-41 (48)
472 cd02679 MIT_spastin MIT: domai 30.6 1.3E+02 0.0028 23.2 4.7 17 868-884 51-67 (79)
473 PF09384 UTP15_C: UTP15 C term 30.2 3.5E+02 0.0076 24.0 8.2 72 59-133 21-108 (148)
474 KOG2297 Predicted translation 30.1 5.8E+02 0.013 25.7 18.4 18 613-630 323-340 (412)
475 PRK07003 DNA polymerase III su 30.0 9.2E+02 0.02 28.4 13.0 46 732-779 180-226 (830)
476 KOG4279 Serine/threonine prote 29.4 9.3E+02 0.02 27.8 15.6 43 178-220 184-229 (1226)
477 cd08819 CARD_MDA5_2 Caspase ac 29.3 2.8E+02 0.0062 21.8 7.5 14 311-324 50-63 (88)
478 COG4941 Predicted RNA polymera 29.1 6.4E+02 0.014 25.8 11.9 28 697-725 272-299 (415)
479 KOG0128 RNA-binding protein SA 28.8 9.9E+02 0.022 27.9 39.3 115 383-500 95-219 (881)
480 PF11663 Toxin_YhaV: Toxin wit 28.8 66 0.0014 27.5 3.1 31 413-445 107-137 (140)
481 PRK09857 putative transposase; 28.5 3.9E+02 0.0084 27.1 9.2 63 372-434 211-273 (292)
482 PF10255 Paf67: RNA polymerase 28.5 7.5E+02 0.016 26.4 17.0 59 335-393 125-190 (404)
483 COG4941 Predicted RNA polymera 28.4 6.6E+02 0.014 25.7 12.6 115 733-850 273-394 (415)
484 PF14771 DUF4476: Domain of un 28.3 2.8E+02 0.0062 22.1 6.8 82 59-143 9-93 (95)
485 KOG1839 Uncharacterized protei 28.0 6.9E+02 0.015 30.9 12.0 28 225-252 971-998 (1236)
486 PF10516 SHNi-TPR: SHNi-TPR; 27.7 1.3E+02 0.0028 19.3 3.6 26 823-848 3-28 (38)
487 COG4976 Predicted methyltransf 27.6 1.3E+02 0.0028 28.7 5.0 55 377-431 5-59 (287)
488 PF12968 DUF3856: Domain of Un 26.9 3.9E+02 0.0084 22.6 10.7 60 787-846 56-125 (144)
489 KOG2659 LisH motif-containing 26.6 5.8E+02 0.013 24.5 11.8 101 712-814 22-131 (228)
490 PF08311 Mad3_BUB1_I: Mad3/BUB 26.5 4.1E+02 0.0089 22.7 12.1 42 804-845 81-123 (126)
491 cd08819 CARD_MDA5_2 Caspase ac 26.4 3.3E+02 0.0071 21.5 7.5 38 344-386 48-85 (88)
492 PRK13342 recombination factor 25.9 8.6E+02 0.019 26.2 18.3 170 312-499 152-333 (413)
493 PF10475 DUF2450: Protein of u 25.6 5.5E+02 0.012 26.0 9.8 114 268-392 104-222 (291)
494 PRK13800 putative oxidoreducta 25.4 1.3E+03 0.028 28.1 29.5 272 316-621 622-894 (897)
495 PF03745 DUF309: Domain of unk 25.2 2.7E+02 0.0059 20.2 6.3 14 310-323 12-25 (62)
496 TIGR02710 CRISPR-associated pr 24.9 7.9E+02 0.017 26.0 10.7 128 302-429 135-274 (380)
497 KOG0292 Vesicle coat complex C 24.9 1.2E+03 0.026 27.6 12.6 36 716-751 1084-1119(1202)
498 PF11838 ERAP1_C: ERAP1-like C 24.9 7.6E+02 0.016 25.3 19.2 110 278-391 146-261 (324)
499 PRK08691 DNA polymerase III su 24.7 1.1E+03 0.025 27.3 13.2 84 732-818 180-277 (709)
500 PRK09462 fur ferric uptake reg 24.4 4.3E+02 0.0093 23.3 7.8 64 178-241 3-66 (148)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.4e-81 Score=735.71 Aligned_cols=682 Identities=19% Similarity=0.281 Sum_probs=634.7
Q ss_pred CcCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHhHHHH
Q 002666 189 RPAFTAYTTLIGALATVRESNLMLNLFHQMQELGYEVSVHLFTTLIRVFAREGRVDDALFLLDEMKNNAFSVDIVLYNVC 268 (895)
Q Consensus 189 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 268 (895)
.++..+++.++..|++.|++++|..+|++|.+.|.+|+..+|..++..|.+.+.++.|..++..+.+.+..++..++|.+
T Consensus 48 ~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~l 127 (857)
T PLN03077 48 SSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAM 127 (857)
T ss_pred ccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHH
Confidence 55667788888888888888888888888888888888888888888888888888888888888888878888888888
Q ss_pred HHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCCH
Q 002666 269 IDCFGKVGKVDMAWKFFHEMKAQGVAPDDVTYTSMIGVLCKSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKF 348 (895)
Q Consensus 269 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 348 (895)
+.+|++.|+++.|+++|++|. .||..+|+.+|.+|++.|++++|+++|++|...|..||..||+.++.+++..+++
T Consensus 128 i~~~~~~g~~~~A~~~f~~m~----~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~ 203 (857)
T PLN03077 128 LSMFVRFGELVHAWYVFGKMP----ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDL 203 (857)
T ss_pred HHHHHhCCChHHHHHHHhcCC----CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccch
Confidence 888888888888888888886 3688888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002666 349 DEAFSLFERLKQKGCIPSVIAYNSLLTCLGKKGRVTEAMKIFEAMKKDARPNNTTYNVLIDMLCKAGNFEDALKFRDAMK 428 (895)
Q Consensus 349 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 428 (895)
..+.+++..+.+.|+.||..+++.|+.+|++.|++++|.++|++|.. +|..+|+.++.+|++.|++++|+++|.+|.
T Consensus 204 ~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~---~d~~s~n~li~~~~~~g~~~eAl~lf~~M~ 280 (857)
T PLN03077 204 ARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR---RDCISWNAMISGYFENGECLEGLELFFTMR 280 (857)
T ss_pred hhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC---CCcchhHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 88899999998889889999999999999999999999999988863 677899999999999999999999999999
Q ss_pred HCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcchhh
Q 002666 429 EAGLFPNVMTVNIMVDRLCKAQKLDEAFSIFEGMDHKTCTPDAVTFCSLIDGLGKNGRVDDAYKFYEKMLDTDQIPNAIL 508 (895)
Q Consensus 429 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 508 (895)
..|+.||..||+.++.++++.|+.+.|.+++..|.+.|+.||..+|+.++.+|++.|++++|.++|++|. .||..+
T Consensus 281 ~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s 356 (857)
T PLN03077 281 ELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVS 356 (857)
T ss_pred HcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeee
Confidence 9999999999999999999999999999999999999999999999999999999999999999999985 368889
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 002666 509 YTSLIRNFFKHGRKEDGHKIYKEMVQRGCSPDLMLLNTYMDCVFKAGETEKGRALFEEIKAQGFVPDVQSYSILIHGLVK 588 (895)
Q Consensus 509 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 588 (895)
|+.++.+|++.|++++|.++|++|.+.|+.||..+++.++.++++.|+.+.|.++++.+.+.|+.|+..+++.|+.+|++
T Consensus 357 ~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k 436 (857)
T PLN03077 357 WTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSK 436 (857)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCCHHHHHHH
Q 002666 589 AGFAHETDQLFYAMKKQGCVLDTRAYNTVVDGFCKSGKVNKAYQLLEEMKTKGHYPTVVTYGSVIDGLAKIDRLDEAYML 668 (895)
Q Consensus 589 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~ 668 (895)
.|++++|.++|++|.+ +|..+|+.++.+|++.|+.++|+.+|++|.. ++.||..||+.++.+|++.|..+.+.++
T Consensus 437 ~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i 511 (857)
T PLN03077 437 CKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEI 511 (857)
T ss_pred cCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHH
Confidence 9999999999999874 5788999999999999999999999999986 5899999999999999999999999999
Q ss_pred HHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 002666 669 FEEAKSKGIELNTVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNAYTWNCLLDALVKAEEISEAFVCFQSMKDLKCT 748 (895)
Q Consensus 669 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 748 (895)
+..+.+.|+.++..++++++++|++.|++++|.++|+.+ .||..+||+++.+|++.|+.++|+++|++|.+.|+.
T Consensus 512 ~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~ 586 (857)
T PLN03077 512 HAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVN 586 (857)
T ss_pred HHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 999999999999999999999999999999999999987 479999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCHhHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 002666 749 PNHVTYSIIINGLCRVRKFNKAFVFWQEMQ-KQGFKPNTITYTTMISGLAKAGNITEANGLFERFKENGGVPDSACYNAM 827 (895)
Q Consensus 749 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 827 (895)
||..||+.++.+|++.|.+++|.++|+.|. +.|+.|+..+|+.++.+|++.|++++|.+++++|. +.||..+|..|
T Consensus 587 Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~---~~pd~~~~~aL 663 (857)
T PLN03077 587 PDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP---ITPDPAVWGAL 663 (857)
T ss_pred CCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC---CCCCHHHHHHH
Confidence 999999999999999999999999999999 56999999999999999999999999999999984 78999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhhhhhhCC
Q 002666 828 MEGLSNANRAMDAYTLFEETRRKGFNIHTKTCVILLDALHKAECLEQAAIVGAVLRETAKSQHAARSW 895 (895)
Q Consensus 828 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~~~~~ 895 (895)
+.+|...|+.+.+....+++++. .|.+...+..|+++|...|+|++|.++.+.+++.+.+|+||+||
T Consensus 664 l~ac~~~~~~e~~e~~a~~l~~l-~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ 730 (857)
T PLN03077 664 LNACRIHRHVELGELAAQHIFEL-DPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSW 730 (857)
T ss_pred HHHHHHcCChHHHHHHHHHHHhh-CCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccE
Confidence 99999999999999999999887 47788888899999999999999999999999999999999999
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.6e-78 Score=708.24 Aligned_cols=677 Identities=18% Similarity=0.256 Sum_probs=479.9
Q ss_pred CCCHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHH
Q 002666 119 AHSLEAYNSLLMVMAVSKNFEPLEEILGEMSLAGIGPTNNTCIELVVSCVKSKMLREAFDIIQTMRKFKFRPAFTAYTTL 198 (895)
Q Consensus 119 ~~~~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 198 (895)
++++..++.++..|++.|++++|..+|++|...|.+|+..+|..++..|.+.+..+.|..++..+.+.+..++...++.+
T Consensus 48 ~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~l 127 (857)
T PLN03077 48 SSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAM 127 (857)
T ss_pred ccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHH
Confidence 34455566666666666666666666666666555555555555555555555555555555555555545555555555
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCh
Q 002666 199 IGALATVRESNLMLNLFHQMQELGYEVSVHLFTTLIRVFAREGRVDDALFLLDEMKNNAFSVDIVLYNVCIDCFGKVGKV 278 (895)
Q Consensus 199 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 278 (895)
+..|++.|+.+.|..+|++|.+ ++..+|+.++.+|++.|++++|+.+|++|...|+.||..||+.++.+|+..+++
T Consensus 128 i~~~~~~g~~~~A~~~f~~m~~----~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~ 203 (857)
T PLN03077 128 LSMFVRFGELVHAWYVFGKMPE----RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDL 203 (857)
T ss_pred HHHHHhCCChHHHHHHHhcCCC----CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccch
Confidence 5555555555555555555532 344455555555555555555555555555555555555555555555555555
Q ss_pred hhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHH
Q 002666 279 DMAWKFFHEMKAQGVAPDDVTYTSMIGVLCKSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLFERL 358 (895)
Q Consensus 279 ~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 358 (895)
+.+.+++..|.+.|+.||..+|+.|+.+|++.|++++|.++|++|.. ||..+|++++.+|++.|++++|.++|++|
T Consensus 204 ~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~M 279 (857)
T PLN03077 204 ARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFTM 279 (857)
T ss_pred hhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHHH
Confidence 55555555555555555555555555555555555555555555432 34445555555555555555555555555
Q ss_pred HhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhh
Q 002666 359 KQKGCIPSVIAYNSLLTCLGKKGRVTEAMKIFEAMKKDARPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEAGLFPNVMT 438 (895)
Q Consensus 359 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 438 (895)
.+.|+.||..+|+. ++.++++.|+.+.|.+++..|.+.|+.||..+
T Consensus 280 ~~~g~~Pd~~ty~~----------------------------------ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~ 325 (857)
T PLN03077 280 RELSVDPDLMTITS----------------------------------VISACELLGDERLGREMHGYVVKTGFAVDVSV 325 (857)
T ss_pred HHcCCCCChhHHHH----------------------------------HHHHHHhcCChHHHHHHHHHHHHhCCccchHH
Confidence 55555555555554 45555555556666666666666666677777
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHh
Q 002666 439 VNIMVDRLCKAQKLDEAFSIFEGMDHKTCTPDAVTFCSLIDGLGKNGRVDDAYKFYEKMLDTDQIPNAILYTSLIRNFFK 518 (895)
Q Consensus 439 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 518 (895)
|+.++.+|++.|++++|.++|++|.. ||..+|+.++.+|++.|++++|.++|++|.+.+..||..+|..++.++++
T Consensus 326 ~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~ 401 (857)
T PLN03077 326 CNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACAC 401 (857)
T ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhc
Confidence 77777777777777777777766643 46666777777777777777777777777777767777777777777777
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 002666 519 HGRKEDGHKIYKEMVQRGCSPDLMLLNTYMDCVFKAGETEKGRALFEEIKAQGFVPDVQSYSILIHGLVKAGFAHETDQL 598 (895)
Q Consensus 519 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 598 (895)
.|+.++|.++++.+.+.|+.|+..+++.++.+|++.|++++|.++|++|.+ +|..+|+.++.+|++.|+.++|..+
T Consensus 402 ~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~l 477 (857)
T PLN03077 402 LGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIF 477 (857)
T ss_pred cchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHH
Confidence 777777777777777777777777777777777777777777777777653 5777888888888888888888888
Q ss_pred HHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCC
Q 002666 599 FYAMKKQGCVLDTRAYNTVVDGFCKSGKVNKAYQLLEEMKTKGHYPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIE 678 (895)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 678 (895)
|++|.. ++.||..+|+.++.+|++.|+.+.+.+++..+.+.|+.++..+++.++++|++.|++++|..+|+.+ .
T Consensus 478 f~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~ 551 (857)
T PLN03077 478 FRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----E 551 (857)
T ss_pred HHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----C
Confidence 888875 4788888888888888888888899999888888888888888889999999999999998888876 5
Q ss_pred cCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-hcCCCCCHHHHHHH
Q 002666 679 LNTVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNAYTWNCLLDALVKAEEISEAFVCFQSMK-DLKCTPNHVTYSII 757 (895)
Q Consensus 679 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~p~~~~~~~l 757 (895)
+|..+|+++|.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|.+.|++++|.++|++|. +.++.|+..+|+++
T Consensus 552 ~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~l 631 (857)
T PLN03077 552 KDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACV 631 (857)
T ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHH
Confidence 78889999999999999999999999999888889999999999999999999999999999998 57888999999999
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCC
Q 002666 758 INGLCRVRKFNKAFVFWQEMQKQGFKPNTITYTTMISGLAKAGNITEANGLFERFKENGGVP-DSACYNAMMEGLSNANR 836 (895)
Q Consensus 758 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~ 836 (895)
+++|++.|++++|.+++++|. +.||..+|++|+.+|...|+.+.+....+++.+ ..| +...|..|.+.|...|+
T Consensus 632 v~~l~r~G~~~eA~~~~~~m~---~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~--l~p~~~~~y~ll~n~ya~~g~ 706 (857)
T PLN03077 632 VDLLGRAGKLTEAYNFINKMP---ITPDPAVWGALLNACRIHRHVELGELAAQHIFE--LDPNSVGYYILLCNLYADAGK 706 (857)
T ss_pred HHHHHhCCCHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--hCCCCcchHHHHHHHHHHCCC
Confidence 999999999999999988884 788999999999998888999988888888887 667 57778888888999999
Q ss_pred HHHHHHHHHHHHHCCCCCCH
Q 002666 837 AMDAYTLFEETRRKGFNIHT 856 (895)
Q Consensus 837 ~~~A~~~~~~~~~~~~~~~~ 856 (895)
|++|.++.+.|.++|+.+++
T Consensus 707 ~~~a~~vr~~M~~~g~~k~~ 726 (857)
T PLN03077 707 WDEVARVRKTMRENGLTVDP 726 (857)
T ss_pred hHHHHHHHHHHHHcCCCCCC
Confidence 99999999999888876654
No 3
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=4.2e-64 Score=572.30 Aligned_cols=546 Identities=19% Similarity=0.296 Sum_probs=460.4
Q ss_pred CCChHhHHHHHHHHHhcCChhhHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCCHHhHHH
Q 002666 259 SVDIVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGV-APDDVTYTSMIGVLCKSKRLEEAVAMFEQMDRNREVPCAYAYNT 337 (895)
Q Consensus 259 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 337 (895)
.++...|..++..+++.|++++|.++|++|.+.|+ .++..+++.++..|.+.|..++|..+|+.|.. |+..+|+.
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~ 442 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNM 442 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHH
Confidence 45667777888888888888888888888888875 45666777888888888888888888888864 78888888
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHhcCC
Q 002666 338 MIMGYGSVGKFDEAFSLFERLKQKGCIPSVIAYNSLLTCLGKKGRVTEAMKIFEAMKK-DARPNNTTYNVLIDMLCKAGN 416 (895)
Q Consensus 338 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~ 416 (895)
++.+|++.|+++.|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+ +..||..+|+.+|.+|++.|+
T Consensus 443 LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~ 522 (1060)
T PLN03218 443 LMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQ 522 (1060)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcC
Confidence 8888888888888888888888888888888888888888888888888888888865 567788888888888888888
Q ss_pred HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhhh--CCCCCChhhHHHHHHHHhhcCCHHHHHHHH
Q 002666 417 FEDALKFRDAMKEAGLFPNVMTVNIMVDRLCKAQKLDEAFSIFEGMDH--KTCTPDAVTFCSLIDGLGKNGRVDDAYKFY 494 (895)
Q Consensus 417 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 494 (895)
+++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.. .++.||..+|+.++.+|++.|++++|.++|
T Consensus 523 ~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf 602 (1060)
T PLN03218 523 VAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVY 602 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 888888898898888889999999999999999999999999988876 567888889999999999999999999999
Q ss_pred HHHHhCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC
Q 002666 495 EKMLDTDQIPNAILYTSLIRNFFKHGRKEDGHKIYKEMVQRGCSPDLMLLNTYMDCVFKAGETEKGRALFEEIKAQGFVP 574 (895)
Q Consensus 495 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 574 (895)
+.|.+.++.|+..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++++.|.+.|+.|
T Consensus 603 ~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~p 682 (1060)
T PLN03218 603 QMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKL 682 (1060)
T ss_pred HHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 99988888888889999999999999999999999999988889999999999999999999999999999999888889
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHhHHHHHH
Q 002666 575 DVQSYSILIHGLVKAGFAHETDQLFYAMKKQGCVLDTRAYNTVVDGFCKSGKVNKAYQLLEEMKTKGHYPTVVTYGSVID 654 (895)
Q Consensus 575 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 654 (895)
+..+|+.++.+|++.|++++|..+|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|...|+.||..+|+.++.
T Consensus 683 d~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~ 762 (1060)
T PLN03218 683 GTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLV 762 (1060)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 99999999999999999999999999998888889999999999999999999999999999988888999999999999
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 002666 655 GLAKIDRLDEAYMLFEEAKSKGIELNTVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNAYTWNCLLDALVKAEEISE 734 (895)
Q Consensus 655 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 734 (895)
+|++.|++++|.++|.+|.+.|+.||..+|++++..|. +++++|..+.+.+.... + .......+..++
T Consensus 763 a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~--~~y~ka~~l~~~v~~f~--~--------g~~~~~n~w~~~ 830 (1060)
T PLN03218 763 ASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL--RRFEKACALGEPVVSFD--S--------GRPQIENKWTSW 830 (1060)
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HHHHHHhhhhhhhhhhh--c--------cccccccchHHH
Confidence 99999999999999999998899999999998886544 34666666555444310 0 111112234467
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002666 735 AFVCFQSMKDLKCTPNHVTYSIIINGLCRVRKFNKAFVFWQEMQKQGFKPNTITYTTMISGLAKAGNITEANGLFERFKE 814 (895)
Q Consensus 735 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 814 (895)
|..+|++|.+.|+.||..||+.++.+++..+..+.+..+++.|...+..|+..+|+.|+.++.+. .++|..++++|.+
T Consensus 831 Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~ 908 (1060)
T PLN03218 831 ALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAAS 908 (1060)
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHH
Confidence 89999999998999999999988888888888888888888887777788888999999887432 3689999999999
Q ss_pred CCCCCCHH
Q 002666 815 NGGVPDSA 822 (895)
Q Consensus 815 ~~~~p~~~ 822 (895)
.|+.|+..
T Consensus 909 ~Gi~p~~~ 916 (1060)
T PLN03218 909 LGVVPSVS 916 (1060)
T ss_pred cCCCCCcc
Confidence 98888653
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=7.5e-64 Score=570.25 Aligned_cols=546 Identities=19% Similarity=0.313 Sum_probs=409.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCC-CCHHhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHH
Q 002666 294 APDDVTYTSMIGVLCKSKRLEEAVAMFEQMDRNREV-PCAYAYNTMIMGYGSVGKFDEAFSLFERLKQKGCIPSVIAYNS 372 (895)
Q Consensus 294 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 372 (895)
.++...|..++..+++.|++++|+++|++|...++. ++..+++.++.+|.+.|..++|..+|+.|.. |+..+|+.
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~ 442 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNM 442 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHH
Confidence 345666777777777777777777777777776643 4556666677777777777777777777654 67777777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 002666 373 LLTCLGKKGRVTEAMKIFEAMKK-DARPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEAGLFPNVMTVNIMVDRLCKAQK 451 (895)
Q Consensus 373 l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 451 (895)
++.+|++.|+++.|.++|+.|.+ +..||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|+
T Consensus 443 LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~ 522 (1060)
T PLN03218 443 LMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQ 522 (1060)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcC
Confidence 77777777777777777777754 55677777777777777777777777777777777777777777777777777777
Q ss_pred hhHHHHHHHHhhhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHh--CCCCcchhhHHHHHHHHHhcCCHHHHHHHH
Q 002666 452 LDEAFSIFEGMDHKTCTPDAVTFCSLIDGLGKNGRVDDAYKFYEKMLD--TDQIPNAILYTSLIRNFFKHGRKEDGHKIY 529 (895)
Q Consensus 452 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 529 (895)
+++|.++|+.|...|+.||..+|+.++.+|++.|++++|.++|++|.. .+..||..+|+.++.+|++.|++++|.++|
T Consensus 523 ~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf 602 (1060)
T PLN03218 523 VAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVY 602 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 777777777777777777777777777777777777777777777765 456677777777777777777777777777
Q ss_pred HHHHHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 002666 530 KEMVQRGCSPDLMLLNTYMDCVFKAGETEKGRALFEEIKAQGFVPDVQSYSILIHGLVKAGFAHETDQLFYAMKKQGCVL 609 (895)
Q Consensus 530 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 609 (895)
+.|.+.|+.|+..+|+.++.+|++.|++++|..+|++|.+.|+.||..+|+.++.+|++.|+.++|.++++.|.+.|+.|
T Consensus 603 ~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~p 682 (1060)
T PLN03218 603 QMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKL 682 (1060)
T ss_pred HHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHH
Q 002666 610 DTRAYNTVVDGFCKSGKVNKAYQLLEEMKTKGHYPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNTVIYSSLID 689 (895)
Q Consensus 610 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 689 (895)
|..+|+.+|.+|++.|++++|.++|++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|...|+.||..+|+.++.
T Consensus 683 d~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~ 762 (1060)
T PLN03218 683 GTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLV 762 (1060)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHhH
Q 002666 690 GFGKVGRIDEAYLIMEELMQKGLTPNAYTWNCLLDALVKAEEISEAFVCFQSMKDLKCTPNHVTYSIIINGLCRVRKFNK 769 (895)
Q Consensus 690 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 769 (895)
+|++.|++++|.++++.|.+.|+.||..+|+.|+..|. +++++|..+.+.+.... + .......+..++
T Consensus 763 a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~--~~y~ka~~l~~~v~~f~--~--------g~~~~~n~w~~~ 830 (1060)
T PLN03218 763 ASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL--RRFEKACALGEPVVSFD--S--------GRPQIENKWTSW 830 (1060)
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HHHHHHhhhhhhhhhhh--c--------cccccccchHHH
Confidence 77777777777777777777777777777777765443 24555555544443211 0 001112234567
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002666 770 AFVFWQEMQKQGFKPNTITYTTMISGLAKAGNITEANGLFERFKENGGVPDSACYNAMMEGLSNANRAMDAYTLFEETRR 849 (895)
Q Consensus 770 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 849 (895)
|+.+|++|.+.|+.||..||+.++.+++..+..+.+..+++.+...+..|+..+|+.|++++.+. .++|..++++|..
T Consensus 831 Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~ 908 (1060)
T PLN03218 831 ALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAAS 908 (1060)
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHH
Confidence 99999999999999999999999998989999999999999998888888999999999998432 3689999999999
Q ss_pred CCCCCCHh
Q 002666 850 KGFNIHTK 857 (895)
Q Consensus 850 ~~~~~~~~ 857 (895)
.|+.|+..
T Consensus 909 ~Gi~p~~~ 916 (1060)
T PLN03218 909 LGVVPSVS 916 (1060)
T ss_pred cCCCCCcc
Confidence 99988864
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.9e-58 Score=527.41 Aligned_cols=479 Identities=20% Similarity=0.284 Sum_probs=376.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCChhhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHH
Q 002666 401 NTTYNVLIDMLCKAGNFEDALKFRDAMKEAG-LFPNVMTVNIMVDRLCKAQKLDEAFSIFEGMDHKTCTPDAVTFCSLID 479 (895)
Q Consensus 401 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 479 (895)
...|+.++..+.+.|++++|+++|+.|...+ ..||..+|+.++.++.+.++++.+.+++..|...|+.||..+++.++.
T Consensus 87 ~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~ 166 (697)
T PLN03081 87 GVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLL 166 (697)
T ss_pred ceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 3456666666666666666666666666543 456667777777777777777777777777777777677777777777
Q ss_pred HHhhcCCHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhH
Q 002666 480 GLGKNGRVDDAYKFYEKMLDTDQIPNAILYTSLIRNFFKHGRKEDGHKIYKEMVQRGCSPDLMLLNTYMDCVFKAGETEK 559 (895)
Q Consensus 480 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 559 (895)
+|++.|++++|.++|++|. .||..+|+.++.+|++.|++++|.++|++|.+.|+.|+..++..++.++...|..+.
T Consensus 167 ~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~ 242 (697)
T PLN03081 167 MHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARA 242 (697)
T ss_pred HHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHH
Confidence 7777777777777777664 256667777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHH
Q 002666 560 GRALFEEIKAQGFVPDVQSYSILIHGLVKAGFAHETDQLFYAMKKQGCVLDTRAYNTVVDGFCKSGKVNKAYQLLEEMKT 639 (895)
Q Consensus 560 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 639 (895)
+.+++..+.+.|+.||..+++.|+.+|++.|+.++|.++|+.|. .+|..+|+.++.+|++.|++++|+++|++|.+
T Consensus 243 ~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~ 318 (697)
T PLN03081 243 GQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRD 318 (697)
T ss_pred HHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 77777777777777788888888888888888888888887775 35778888888888888888888888888888
Q ss_pred CCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHH
Q 002666 640 KGHYPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNTVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNAYTW 719 (895)
Q Consensus 640 ~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 719 (895)
.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..++++++++|++.|++++|.++|++|.+ ||..+|
T Consensus 319 ~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~ 394 (697)
T PLN03081 319 SGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISW 394 (697)
T ss_pred cCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeH
Confidence 8888888888888888888888888888888888888888888888888888888888888888888754 678888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHh
Q 002666 720 NCLLDALVKAEEISEAFVCFQSMKDLKCTPNHVTYSIIINGLCRVRKFNKAFVFWQEMQKQ-GFKPNTITYTTMISGLAK 798 (895)
Q Consensus 720 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~ 798 (895)
|+|+.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+. |+.|+..+|+.++.+|++
T Consensus 395 n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r 474 (697)
T PLN03081 395 NALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGR 474 (697)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHh
Confidence 8888888888888888888888888888888888888888888888888888888888764 788888888888888888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHH
Q 002666 799 AGNITEANGLFERFKENGGVPDSACYNAMMEGLSNANRAMDAYTLFEETRRKGFNIHTKTCVILLDALHKAECLEQAAIV 878 (895)
Q Consensus 799 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 878 (895)
.|++++|.++++++ +..|+..+|..|+.+|...|+++.|...++++.+.+ |.+..+|..|+++|.+.|+|++|.++
T Consensus 475 ~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~-p~~~~~y~~L~~~y~~~G~~~~A~~v 550 (697)
T PLN03081 475 EGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMG-PEKLNNYVVLLNLYNSSGRQAEAAKV 550 (697)
T ss_pred cCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCC-CCCCcchHHHHHHHHhCCCHHHHHHH
Confidence 88888888887665 467888888888888888888888888888887653 55667788888888888888888888
Q ss_pred HHHHHHHHHhhhhhhCC
Q 002666 879 GAVLRETAKSQHAARSW 895 (895)
Q Consensus 879 ~~~l~~~~~~~~~~~~~ 895 (895)
.+.+.+.+.++.|++||
T Consensus 551 ~~~m~~~g~~k~~g~s~ 567 (697)
T PLN03081 551 VETLKRKGLSMHPACTW 567 (697)
T ss_pred HHHHHHcCCccCCCeeE
Confidence 88888888888888887
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=7.9e-57 Score=514.01 Aligned_cols=512 Identities=19% Similarity=0.301 Sum_probs=396.4
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHhhCC-CCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 002666 296 DDVTYTSMIGVLCKSKRLEEAVAMFEQMDRNR-EVPCAYAYNTMIMGYGSVGKFDEAFSLFERLKQKGCIPSVIAYNSLL 374 (895)
Q Consensus 296 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 374 (895)
+..+|+.++..+.+.|++++|+++|+.|...+ ..|+..+|+.++.++.+.++++.|.+++..|.+.|+.||..+|+.++
T Consensus 86 ~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li 165 (697)
T PLN03081 86 SGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVL 165 (697)
T ss_pred CceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHH
Confidence 33445555555555555555555555554432 33455555555555555555555555555555555555656666666
Q ss_pred HHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhH
Q 002666 375 TCLGKKGRVTEAMKIFEAMKKDARPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEAGLFPNVMTVNIMVDRLCKAQKLDE 454 (895)
Q Consensus 375 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 454 (895)
.+|++.|+++.|.++|++|.+ +|..+|+.++.+|++.|++++|.++|++|.+.|+.|+..+|+.++.+++..|..+.
T Consensus 166 ~~y~k~g~~~~A~~lf~~m~~---~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~ 242 (697)
T PLN03081 166 LMHVKCGMLIDARRLFDEMPE---RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARA 242 (697)
T ss_pred HHHhcCCCHHHHHHHHhcCCC---CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHH
Confidence 666666666666666665542 46666777777777777777777777788777888888888888888888888888
Q ss_pred HHHHHHHhhhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002666 455 AFSIFEGMDHKTCTPDAVTFCSLIDGLGKNGRVDDAYKFYEKMLDTDQIPNAILYTSLIRNFFKHGRKEDGHKIYKEMVQ 534 (895)
Q Consensus 455 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 534 (895)
+.+++..+.+.|+.||..+++.++.+|++.|++++|.++|++|. .+|..+|+.++.+|++.|+.++|.++|++|.+
T Consensus 243 ~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~ 318 (697)
T PLN03081 243 GQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRD 318 (697)
T ss_pred HHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 88888888888888888888888888888888888888888774 34777888888888888888888888888888
Q ss_pred cCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhH
Q 002666 535 RGCSPDLMLLNTYMDCVFKAGETEKGRALFEEIKAQGFVPDVQSYSILIHGLVKAGFAHETDQLFYAMKKQGCVLDTRAY 614 (895)
Q Consensus 535 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 614 (895)
.|+.||..+|+.++.+|++.|++++|.+++..+.+.|+.||..+++.|+.+|++.|++++|..+|++|.+ ||..+|
T Consensus 319 ~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~ 394 (697)
T PLN03081 319 SGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISW 394 (697)
T ss_pred cCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeH
Confidence 8888888888888888888888888888888888888888999999999999999999999999988863 688899
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHH-cCCCcCHHHHHHHHHHHHc
Q 002666 615 NTVVDGFCKSGKVNKAYQLLEEMKTKGHYPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKS-KGIELNTVIYSSLIDGFGK 693 (895)
Q Consensus 615 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~~ 693 (895)
+.+|.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|.+.|.+++|.++|+.|.+ .|+.|+..+|+.++++|++
T Consensus 395 n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r 474 (697)
T PLN03081 395 NALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGR 474 (697)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999976 5889999999999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHhHHHHH
Q 002666 694 VGRIDEAYLIMEELMQKGLTPNAYTWNCLLDALVKAEEISEAFVCFQSMKDLKCTPNHVTYSIIINGLCRVRKFNKAFVF 773 (895)
Q Consensus 694 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 773 (895)
.|++++|.++++++ ++.|+..+|++|+.+|...|+++.|..+++++.+.+ +.+..+|..++++|++.|++++|.++
T Consensus 475 ~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~-p~~~~~y~~L~~~y~~~G~~~~A~~v 550 (697)
T PLN03081 475 EGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMG-PEKLNNYVVLLNLYNSSGRQAEAAKV 550 (697)
T ss_pred cCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCC-CCCCcchHHHHHHHHhCCCHHHHHHH
Confidence 99999999988765 577899999999999999999999999999987633 22457899999999999999999999
Q ss_pred HHHHHHCCCCCCH-HHHHHHHH---HHH--------hcCCHHHHHHHHHHHHHCCCCCCHH
Q 002666 774 WQEMQKQGFKPNT-ITYTTMIS---GLA--------KAGNITEANGLFERFKENGGVPDSA 822 (895)
Q Consensus 774 ~~~~~~~~~~p~~-~~~~~l~~---~~~--------~~g~~~~A~~~~~~~~~~~~~p~~~ 822 (895)
+++|.+.|+...+ .+|..+.. .+. ...-++...++..+|.+.|+.|+..
T Consensus 551 ~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~ 611 (697)
T PLN03081 551 VETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEEN 611 (697)
T ss_pred HHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcc
Confidence 9999998875332 23321110 000 0112455667888888899999754
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=2.6e-48 Score=470.55 Aligned_cols=766 Identities=14% Similarity=0.062 Sum_probs=628.9
Q ss_pred HHHHhhcCChHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 002666 93 IGVLRRLKDVNLAINYFRWVERKTDQAHSLEAYNSLLMVMAVSKNFEPLEEILGEMSLAGIGPTNNTCIELVVSCVKSKM 172 (895)
Q Consensus 93 ~~~l~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~ 172 (895)
...+...++++.|...|+.+.... |.++.++..++.++...|++++|..+++++... .+.+..++..+...+...|+
T Consensus 132 ~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~ 208 (899)
T TIGR02917 132 GLAYLGLGQLELAQKSYEQALAID--PRSLYAKLGLAQLALAENRFDEARALIDEVLTA-DPGNVDALLLKGDLLLSLGN 208 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHhcCC
Confidence 344455678888888888777443 456677888888888888888888888887665 35566777777788888888
Q ss_pred hHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 002666 173 LREAFDIIQTMRKFKFRPAFTAYTTLIGALATVRESNLMLNLFHQMQELGYEVSVHLFTTLIRVFAREGRVDDALFLLDE 252 (895)
Q Consensus 173 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 252 (895)
+++|...|+...+.. +.+..++..++..+...|++++|...++.+.+.. +.+.......+..+...|++++|...|++
T Consensus 209 ~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 286 (899)
T TIGR02917 209 IELALAAYRKAIALR-PNNPAVLLALATILIEAGEFEEAEKHADALLKKA-PNSPLAHYLKALVDFQKKNYEDARETLQD 286 (899)
T ss_pred HHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 888888888877654 4456677777788888888888888888887753 33444555556666778888888888888
Q ss_pred HHhCCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCCH
Q 002666 253 MKNNAFSVDIVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGVAPDDVTYTSMIGVLCKSKRLEEAVAMFEQMDRNREVPCA 332 (895)
Q Consensus 253 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 332 (895)
+.+.+. .+...+..+..++...|++++|...|+++.+.. +.+...+..++..+.+.|++++|...++++....+. +.
T Consensus 287 ~l~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~ 363 (899)
T TIGR02917 287 ALKSAP-EYLPALLLAGASEYQLGNLEQAYQYLNQILKYA-PNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPD-DP 363 (899)
T ss_pred HHHhCC-CchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CH
Confidence 877642 223344456667778888888888888888763 235567777888888889999999988888877654 67
Q ss_pred HhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 002666 333 YAYNTMIMGYGSVGKFDEAFSLFERLKQKGCIPSVIAYNSLLTCLGKKGRVTEAMKIFEAMKKDARPNNTTYNVLIDMLC 412 (895)
Q Consensus 333 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 412 (895)
..+..++..+.+.|++++|.++|+++.+..+ .+...+..+...+...|++++|++.++.+.+..|........++..+.
T Consensus 364 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~ 442 (899)
T TIGR02917 364 AALSLLGEAYLALGDFEKAAEYLAKATELDP-ENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYL 442 (899)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHH
Confidence 7888888888899999999999988887653 356677888888888899999999998888777777778888888889
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhhcCCHHHHHH
Q 002666 413 KAGNFEDALKFRDAMKEAGLFPNVMTVNIMVDRLCKAQKLDEAFSIFEGMDHKTCTPDAVTFCSLIDGLGKNGRVDDAYK 492 (895)
Q Consensus 413 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 492 (895)
+.|++++|..+++++.... +++..++..++..+...|++++|...|+++.+.. +.+...+..++..+...|++++|..
T Consensus 443 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~ 520 (899)
T TIGR02917 443 RSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQ 520 (899)
T ss_pred hcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 9999999999998887653 4567788888999999999999999999988764 3356678888899999999999999
Q ss_pred HHHHHHhCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCC
Q 002666 493 FYEKMLDTDQIPNAILYTSLIRNFFKHGRKEDGHKIYKEMVQRGCSPDLMLLNTYMDCVFKAGETEKGRALFEEIKAQGF 572 (895)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 572 (895)
.|+++++..+ .+..++..++..+...|+.++|...++++...+ +.+...+..++..+...|++++|..+++.+.+..
T Consensus 521 ~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~- 597 (899)
T TIGR02917 521 RFEKVLTIDP-KNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA- 597 (899)
T ss_pred HHHHHHHhCc-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-
Confidence 9999988764 477788889999999999999999999988764 4566777788889999999999999999988764
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHhHHHH
Q 002666 573 VPDVQSYSILIHGLVKAGFAHETDQLFYAMKKQGCVLDTRAYNTVVDGFCKSGKVNKAYQLLEEMKTKGHYPTVVTYGSV 652 (895)
Q Consensus 573 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 652 (895)
+.+...+..++..+...|++++|...++.+.+.. +.+...+..++.++...|++++|...++++.+... .+..++..+
T Consensus 598 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l 675 (899)
T TIGR02917 598 PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKP-DNTEAQIGL 675 (899)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHH
Confidence 4577889999999999999999999999998764 45677888899999999999999999999987643 357788889
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 002666 653 IDGLAKIDRLDEAYMLFEEAKSKGIELNTVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNAYTWNCLLDALVKAEEI 732 (895)
Q Consensus 653 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 732 (895)
+..+...|++++|..+++.+.+.. +.+...+..++..+...|++++|++.|+.+.+.+ |+..++..++.++...|++
T Consensus 676 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~ 752 (899)
T TIGR02917 676 AQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNT 752 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCH
Confidence 999999999999999999998875 5577788888999999999999999999999853 5557777889999999999
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 002666 733 SEAFVCFQSMKDLKCTPNHVTYSIIINGLCRVRKFNKAFVFWQEMQKQGFKPNTITYTTMISGLAKAGNITEANGLFERF 812 (895)
Q Consensus 733 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 812 (895)
++|.+.++++.+.. +.+...+..++..|...|++++|...|+++.+. .+++..++..++..+...|+ .+|+.+++++
T Consensus 753 ~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~ 829 (899)
T TIGR02917 753 AEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK-APDNAVVLNNLAWLYLELKD-PRALEYAEKA 829 (899)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHH
Confidence 99999999999854 556778889999999999999999999999986 35567889999999999999 8899999999
Q ss_pred HHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002666 813 KENGGVP-DSACYNAMMEGLSNANRAMDAYTLFEETRRKGFNIHTKTCVILLDALHKAECLEQAAIVGAVLR 883 (895)
Q Consensus 813 ~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~l~ 883 (895)
.+ ..| ++..+..++.++...|++++|...++++++.+ |.+..++..++.+|.+.|++++|.++.++++
T Consensus 830 ~~--~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 830 LK--LAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIA-PEAAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred Hh--hCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 98 556 67788899999999999999999999999986 6689999999999999999999999888775
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=2.6e-47 Score=461.77 Aligned_cols=807 Identities=12% Similarity=0.043 Sum_probs=563.5
Q ss_pred HHHHHHHHhhcCCCCchHHHhhhhcCCCCC-h---HHHHHHHhhcCChHHHHHHHHHhhhcCC-----------------
Q 002666 59 VVDDVYNILHAGPWGPAVENALSSLDGMPQ-P---GLVIGVLRRLKDVNLAINYFRWVERKTD----------------- 117 (895)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~---~~~~~~l~~~~~~~~a~~~f~~~~~~~~----------------- 117 (895)
........+.++++..++...-+.+...|. + ..+..++...|+++.|...|+.+....+
T Consensus 25 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~g 104 (899)
T TIGR02917 25 LIEAAKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARAYLLQG 104 (899)
T ss_pred HHHHHHHHHHcCChHhHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChhhhHHHHHHHHHHCC
Confidence 344444455555555443332222222222 1 1245555666777777777766654321
Q ss_pred ----------------CCCCHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHH
Q 002666 118 ----------------QAHSLEAYNSLLMVMAVSKNFEPLEEILGEMSLAGIGPTNNTCIELVVSCVKSKMLREAFDIIQ 181 (895)
Q Consensus 118 ----------------~~~~~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 181 (895)
.+....++..++.++...|++++|...|+++.... +.+..++..++..+...|++++|..+++
T Consensus 105 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~ 183 (899)
T TIGR02917 105 KFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAID-PRSLYAKLGLAQLALAENRFDEARALID 183 (899)
T ss_pred CHHHHHHhhcccccCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHCCCHHHHHHHHH
Confidence 12223344444455555555555555555544432 2233444455555555555555555555
Q ss_pred HHHhCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC
Q 002666 182 TMRKFKFRPAFTAYTTLIGALATVRESNLMLNLFHQMQELGYEVSVHLFTTLIRVFAREGRVDDALFLLDEMKNNAFSVD 261 (895)
Q Consensus 182 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 261 (895)
.+.+.. +.+...+..++..+...|++++|...|+++.+.+ +.+..++..++..+...|++++|...++.+.+.. +.+
T Consensus 184 ~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-~~~ 260 (899)
T TIGR02917 184 EVLTAD-PGNVDALLLKGDLLLSLGNIELALAAYRKAIALR-PNNPAVLLALATILIEAGEFEEAEKHADALLKKA-PNS 260 (899)
T ss_pred HHHHhC-CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCC
Confidence 554432 2334445555555555555555555555555442 2344445555555555555555555555555443 112
Q ss_pred hHhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCCHHhHHHHHHH
Q 002666 262 IVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGVAPDDVTYTSMIGVLCKSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMG 341 (895)
Q Consensus 262 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 341 (895)
...+......+...|++++|...|+++.+.+.. +...+..+...+...|++++|...|+++....+. +..++..++..
T Consensus 261 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~la~~ 338 (899)
T TIGR02917 261 PLAHYLKALVDFQKKNYEDARETLQDALKSAPE-YLPALLLAGASEYQLGNLEQAYQYLNQILKYAPN-SHQARRLLASI 338 (899)
T ss_pred chHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-chhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHH
Confidence 222223333444555555555555555544211 1223344455556666666666666666665443 45566666667
Q ss_pred HHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 002666 342 YGSVGKFDEAFSLFERLKQKGCIPSVIAYNSLLTCLGKKGRVTEAMKIFEAMKKDARPNNTTYNVLIDMLCKAGNFEDAL 421 (895)
Q Consensus 342 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 421 (895)
+...|++++|...++.+.+.+ +.+...+..++..+.+.|++++|.+.|+++....|.+...+..++..+...|++++|.
T Consensus 339 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 417 (899)
T TIGR02917 339 QLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAI 417 (899)
T ss_pred HHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHH
Confidence 777777777777777776654 2355667777777777777777777777777666777777777777777777777777
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCC
Q 002666 422 KFRDAMKEAGLFPNVMTVNIMVDRLCKAQKLDEAFSIFEGMDHKTCTPDAVTFCSLIDGLGKNGRVDDAYKFYEKMLDTD 501 (895)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 501 (895)
+.++++.+... ........++..+.+.|++++|..+++.+... .+++..++..++..+...|++++|...|+++++..
T Consensus 418 ~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 495 (899)
T TIGR02917 418 ADLETAAQLDP-ELGRADLLLILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE 495 (899)
T ss_pred HHHHHHHhhCC-cchhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC
Confidence 77777766532 12334455666777788888888888877765 34467788888888999999999999999988875
Q ss_pred CCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 002666 502 QIPNAILYTSLIRNFFKHGRKEDGHKIYKEMVQRGCSPDLMLLNTYMDCVFKAGETEKGRALFEEIKAQGFVPDVQSYSI 581 (895)
Q Consensus 502 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 581 (895)
+ .+...+..++..+...|++++|.+.++.+.+.+ +.+..++..+...+...|+.++|...++++...+ +.+...+..
T Consensus 496 ~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 572 (899)
T TIGR02917 496 P-DFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALA 572 (899)
T ss_pred C-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHH
Confidence 4 466677888888889999999999999888764 4567778888888888999999999999887764 346677778
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCC
Q 002666 582 LIHGLVKAGFAHETDQLFYAMKKQGCVLDTRAYNTVVDGFCKSGKVNKAYQLLEEMKTKGHYPTVVTYGSVIDGLAKIDR 661 (895)
Q Consensus 582 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 661 (895)
++..+...|++++|..+++.+.+.. +.+...|..++.++...|++++|...++++.+... .+...+..++..+...|+
T Consensus 573 l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~ 650 (899)
T TIGR02917 573 LAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQP-DSALALLLLADAYAVMKN 650 (899)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCC
Confidence 8888999999999999999888764 55678888999999999999999999999887643 356678888888999999
Q ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 002666 662 LDEAYMLFEEAKSKGIELNTVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNAYTWNCLLDALVKAEEISEAFVCFQS 741 (895)
Q Consensus 662 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 741 (895)
+++|...++++.+.. +.+...+..++..+...|++++|..+++.+.+.. +++...+..++..+...|++++|...|++
T Consensus 651 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 728 (899)
T TIGR02917 651 YAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRK 728 (899)
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 999999999988764 4567888889999999999999999999988854 34777888889999999999999999999
Q ss_pred HHhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-C
Q 002666 742 MKDLKCTPNHVTYSIIINGLCRVRKFNKAFVFWQEMQKQGFKPNTITYTTMISGLAKAGNITEANGLFERFKENGGVP-D 820 (895)
Q Consensus 742 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~ 820 (895)
+.+.. |+..++..++.++...|++++|.+.++++.+. .+.+..++..++..|...|++++|.+.|+++++. .| +
T Consensus 729 ~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~ 803 (899)
T TIGR02917 729 ALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKT-HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK--APDN 803 (899)
T ss_pred HHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh--CCCC
Confidence 98854 55577778889999999999999999999875 3556788888999999999999999999999984 44 7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Q 002666 821 SACYNAMMEGLSNANRAMDAYTLFEETRRKGFNIHTKTCVILLDALHKAECLEQAAIVGAVLRETAKS 888 (895)
Q Consensus 821 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 888 (895)
+.++..++..+...|+ .+|+.+++++.... |.+...+..++.++...|++++|....+++.+..+.
T Consensus 804 ~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~ 869 (899)
T TIGR02917 804 AVVLNNLAWLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE 869 (899)
T ss_pred HHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 8889999999999999 88999999998874 677788889999999999999999987777765543
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=6.3e-30 Score=307.03 Aligned_cols=565 Identities=12% Similarity=0.061 Sum_probs=250.0
Q ss_pred HHHHHhcCChhhHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCC
Q 002666 269 IDCFGKVGKVDMAWKFFHEMKAQGVAPDDV-TYTSMIGVLCKSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGK 347 (895)
Q Consensus 269 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 347 (895)
+..+...|++++|.+.|+.+.+.+ +|+.. ....+.......|+.++|++.|+++....|. +...+..+...+...|+
T Consensus 119 A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~-~~~~~~~LA~ll~~~g~ 196 (1157)
T PRK11447 119 ARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPG-NTGLRNTLALLLFSSGR 196 (1157)
T ss_pred HHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHccCC
Confidence 334555566666666666555432 12211 1111111112345566666666666555543 45555555555656666
Q ss_pred HHHHHHHHHHHHhcCC------------------CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 002666 348 FDEAFSLFERLKQKGC------------------IPS-VIAYNSLLTCLGKKGRVTEAMKIFEAMKKDARPNNTTYNVLI 408 (895)
Q Consensus 348 ~~~A~~~~~~~~~~~~------------------~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 408 (895)
+++|+..++++.+... .+. ...+...+..+-.....+.|...+..................
T Consensus 197 ~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G 276 (1157)
T PRK11447 197 RDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQG 276 (1157)
T ss_pred HHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHH
Confidence 6666666665544311 000 001111111111112233344444433221111111122334
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCC-ChhhH------------H
Q 002666 409 DMLCKAGNFEDALKFRDAMKEAGLFPNVMTVNIMVDRLCKAQKLDEAFSIFEGMDHKTCTP-DAVTF------------C 475 (895)
Q Consensus 409 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~------------~ 475 (895)
..+...|++++|+..|++.+... +.+...+..+...+.+.|++++|+..|++..+..... ....+ .
T Consensus 277 ~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~ 355 (1157)
T PRK11447 277 LAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLI 355 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHH
Confidence 55556666666666666666542 1245556666666666666666666666665543211 11111 1
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcC
Q 002666 476 SLIDGLGKNGRVDDAYKFYEKMLDTDQIPNAILYTSLIRNFFKHGRKEDGHKIYKEMVQRGCSPDLMLLNTYMDCVFKAG 555 (895)
Q Consensus 476 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 555 (895)
.....+.+.|++++|+..|+++++..+ .+..++..++..+...|++++|++.|+++++.. +.+...+..+...+ ..+
T Consensus 356 ~~g~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~-~~~ 432 (1157)
T PRK11447 356 QQGDAALKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLY-RQQ 432 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH-Hhc
Confidence 223445566666666666666666543 344555566666666666666666666666542 22333444444443 234
Q ss_pred ChhHHHHHHHHHHHCCCC--------CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCCh
Q 002666 556 ETEKGRALFEEIKAQGFV--------PDVQSYSILIHGLVKAGFAHETDQLFYAMKKQGCVLDTRAYNTVVDGFCKSGKV 627 (895)
Q Consensus 556 ~~~~a~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 627 (895)
+.++|...++.+...... .....+..+...+...|++++|...+++.++.. +.+...+..+...|.+.|++
T Consensus 433 ~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~ 511 (1157)
T PRK11447 433 SPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQR 511 (1157)
T ss_pred CHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH
Confidence 556666555543221100 001122233444445555555555555555442 22334444455555555555
Q ss_pred HHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHH---------HHHHHHHHHccCCHH
Q 002666 628 NKAYQLLEEMKTKGHYPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNTVI---------YSSLIDGFGKVGRID 698 (895)
Q Consensus 628 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~---------~~~l~~~~~~~g~~~ 698 (895)
++|...++++.+.... +...+..+...+...++.++|...++.+......++... +..++..+...|+.+
T Consensus 512 ~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~ 590 (1157)
T PRK11447 512 SQADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEA 590 (1157)
T ss_pred HHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHH
Confidence 5555555555443211 222232333333444555555555544332211111100 112233344444444
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 002666 699 EAYLIMEELMQKGLTPNAYTWNCLLDALVKAEEISEAFVCFQSMKDLKCTPNHVTYSIIINGLCRVRKFNKAFVFWQEMQ 778 (895)
Q Consensus 699 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 778 (895)
+|+.+++. .+++...+..++..+.+.|++++|+..|+++++.. +.+...+..++.+|...|++++|++.++.+.
T Consensus 591 eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll 664 (1157)
T PRK11447 591 EAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLP 664 (1157)
T ss_pred HHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 44444431 12233334444444444444444444444444422 2233344444444444444444444444444
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002666 779 KQGFKPNTITYTTMISGLAKAGNITEANGLFERFKENGG--VP---DSACYNAMMEGLSNANRAMDAYTLFEETR 848 (895)
Q Consensus 779 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 848 (895)
+. .+.+..++..+..++...|++++|.+++++++.... .| +...+..++..+...|++++|+..|++++
T Consensus 665 ~~-~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al 738 (1157)
T PRK11447 665 AT-ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAM 738 (1157)
T ss_pred cc-CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 31 111223334444444444444444444444443210 01 11233334444444444444444444443
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=4.5e-30 Score=308.26 Aligned_cols=643 Identities=12% Similarity=0.081 Sum_probs=437.6
Q ss_pred HHHhhcCChHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCCChhh--------------
Q 002666 94 GVLRRLKDVNLAINYFRWVERKTDQAHSLEAYNSLLMVMAVSKNFEPLEEILGEMSLAGIGPTNNT-------------- 159 (895)
Q Consensus 94 ~~l~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~-------------- 159 (895)
++-...++++.|.+.+..+... .|.+++++..+++++.+.|+.++|.+.+++..+.. |.+..+
T Consensus 36 ~~~~~~~~~d~a~~~l~kl~~~--~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~-P~~~~~~~~~~~~~~~~~~~ 112 (1157)
T PRK11447 36 RLGEATHREDLVRQSLYRLELI--DPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA-PDSNAYRSSRTTMLLSTPEG 112 (1157)
T ss_pred HHHHhhCChHHHHHHHHHHHcc--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHhcCCch
Confidence 3344568999999999988854 46789999999999999999999999999998864 333222
Q ss_pred --HHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHH
Q 002666 160 --CIELVVSCVKSKMLREAFDIIQTMRKFKFRPAFTAYTTLIGALATVRESNLMLNLFHQMQELGYEVSVHLFTTLIRVF 237 (895)
Q Consensus 160 --~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 237 (895)
...+...+.+.|++++|...|+.+.+...+........+.......|+.++|+..++++.+.. +.+......++..+
T Consensus 113 ~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll 191 (1157)
T PRK11447 113 RQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLL 191 (1157)
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 234455688999999999999999876422222222222222334689999999999999874 55778889999999
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCC--hHh-----------------HHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHH
Q 002666 238 AREGRVDDALFLLDEMKNNAFSVD--IVL-----------------YNVCIDCFGKVGKVDMAWKFFHEMKAQGVAPDDV 298 (895)
Q Consensus 238 ~~~g~~~~A~~~~~~~~~~~~~~~--~~~-----------------~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 298 (895)
...|++++|+..|+++.+...... ... +...+..+-.....+.|...+.++......|+..
T Consensus 192 ~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~ 271 (1157)
T PRK11447 192 FSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFR 271 (1157)
T ss_pred HccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchH
Confidence 999999999999999876421100 001 1111111111222345555555554432233322
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCC-HHHH-------
Q 002666 299 TYTSMIGVLCKSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLFERLKQKGCIPS-VIAY------- 370 (895)
Q Consensus 299 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~------- 370 (895)
...+...+...|++++|+..|++.++..+. +..++..++..|.+.|++++|+..|+++.+...... ...+
T Consensus 272 -~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~ 349 (1157)
T PRK11447 272 -ARAQGLAAVDSGQGGKAIPELQQAVRANPK-DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVN 349 (1157)
T ss_pred -HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhh
Confidence 224466778899999999999999988765 788999999999999999999999999988653321 1111
Q ss_pred -----HHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 002666 371 -----NSLLTCLGKKGRVTEAMKIFEAMKKDARPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEAGLFPNVMTVNIMVDR 445 (895)
Q Consensus 371 -----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 445 (895)
......+.+.|++++|+..|+++....|.+..++..++.++...|++++|++.|+++.+.. +.+...+..+...
T Consensus 350 ~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l 428 (1157)
T PRK11447 350 RYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANL 428 (1157)
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 2234567789999999999999998888899999999999999999999999999998753 2234555556666
Q ss_pred HHhcCChhHHHHHHHHhhhCCCC--------CChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcchhhHHHHHHHHH
Q 002666 446 LCKAQKLDEAFSIFEGMDHKTCT--------PDAVTFCSLIDGLGKNGRVDDAYKFYEKMLDTDQIPNAILYTSLIRNFF 517 (895)
Q Consensus 446 ~~~~g~~~~A~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 517 (895)
+ ..++.++|..+++.+...... .....+..++..+...|++++|+..|+++++..+ .+...+..++..+.
T Consensus 429 ~-~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P-~~~~~~~~LA~~~~ 506 (1157)
T PRK11447 429 Y-RQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDP-GSVWLTYRLAQDLR 506 (1157)
T ss_pred H-HhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH
Confidence 5 456789998888765433100 0122345567778888899999999998888765 36777888888888
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 002666 518 KHGRKEDGHKIYKEMVQRGCSPDLMLLNTYMDCVFKAGETEKGRALFEEIKAQGFVPDVQSYSILIHGLVKAGFAHETDQ 597 (895)
Q Consensus 518 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 597 (895)
+.|++++|...++++++.. +.+...+..+...+...++.++|...++.+......++.....
T Consensus 507 ~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~----------------- 568 (1157)
T PRK11447 507 QAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELA----------------- 568 (1157)
T ss_pred HcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHH-----------------
Confidence 8999999999888887753 3344445555556667788888888887654332111111100
Q ss_pred HHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCC
Q 002666 598 LFYAMKKQGCVLDTRAYNTVVDGFCKSGKVNKAYQLLEEMKTKGHYPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGI 677 (895)
Q Consensus 598 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 677 (895)
..+ ....+..++..+...|++++|.++++. .+++...+..+...+.+.|++++|+..|+++.+..
T Consensus 569 --~~l-------~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~- 633 (1157)
T PRK11447 569 --QRL-------QSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE- 633 (1157)
T ss_pred --HHH-------hhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 000 001122345556667777777776661 12344455666677777777777777777777653
Q ss_pred CcCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CC---CHH
Q 002666 678 ELNTVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNAYTWNCLLDALVKAEEISEAFVCFQSMKDLKC--TP---NHV 752 (895)
Q Consensus 678 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~p---~~~ 752 (895)
+.+...+..++..|...|++++|++.++.+.+.. +.+..++..++.++...|++++|.+++++++.... +| +..
T Consensus 634 P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~ 712 (1157)
T PRK11447 634 PGNADARLGLIEVDIAQGDLAAARAQLAKLPATA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESAL 712 (1157)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHH
Confidence 3456667777777777777777777777666531 12455556666777777777777777777765321 11 113
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 002666 753 TYSIIINGLCRVRKFNKAFVFWQEMQK 779 (895)
Q Consensus 753 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 779 (895)
.+..+...+...|++++|+..|++...
T Consensus 713 ~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 713 VLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 444556667777777777777776653
No 11
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=100.00 E-value=3.3e-26 Score=260.65 Aligned_cols=658 Identities=10% Similarity=0.024 Sum_probs=404.0
Q ss_pred hcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHH
Q 002666 169 KSKMLREAFDIIQTMRKFKFRPAFTAYTTLIGALATVRESNLMLNLFHQMQELGYEVSVHLFTTLIRVFAREGRVDDALF 248 (895)
Q Consensus 169 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 248 (895)
..|++++|+..|+...+.. +-+..++..+...|...|++++|+...++..+.. +.+...+..+.. .+++++|..
T Consensus 56 ~~Gd~~~A~~~l~~Al~~d-P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld-P~n~~~~~~La~----i~~~~kA~~ 129 (987)
T PRK09782 56 KNNDEATAIREFEYIHQQV-PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH-PGDARLERSLAA----IPVEVKSVT 129 (987)
T ss_pred hCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-cccHHHHHHHHH----hccChhHHH
Confidence 3477777777777777664 2336666777777777777777777777777653 223333333322 277777777
Q ss_pred HHHHHHhCCCCCChHhHHHHHHH--------HHhcCChhhHHHHHHHHHHCCCCCCHHHHHHH-HHHHHhcCCHhHHHHH
Q 002666 249 LLDEMKNNAFSVDIVLYNVCIDC--------FGKVGKVDMAWKFFHEMKAQGVAPDDVTYTSM-IGVLCKSKRLEEAVAM 319 (895)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~l~~~--------~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l-~~~~~~~g~~~~A~~~ 319 (895)
+++++.+.. +-+..++..+... |.+. ++|.+.++ .......|+..+.... ...|.+.|++++|++.
T Consensus 130 ~ye~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~l 204 (987)
T PRK09782 130 TVEELLAQQ-KACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTL 204 (987)
T ss_pred HHHHHHHhC-CCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHH
Confidence 777777664 3334444444443 4333 44444444 3333333344433333 6777777777777777
Q ss_pred HHHHhhCCCCCCHHhHHHHHHHHHc-cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCC-
Q 002666 320 FEQMDRNREVPCAYAYNTMIMGYGS-VGKFDEAFSLFERLKQKGCIPSVIAYNSLLTCLGKKGRVTEAMKIFEAMKKDA- 397 (895)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 397 (895)
+.++.+.++. +......|..+|.. .++ +.+..++... ...+...+..++..|.+.|+.++|.++++++....
T Consensus 205 L~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~~----lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~ 278 (987)
T PRK09782 205 YNEARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQG----IFTDPQSRITYATALAYRGEKARLQHYLIENKPLFT 278 (987)
T ss_pred HHHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhchh----cccCHHHHHHHHHHHHHCCCHHHHHHHHHhCccccc
Confidence 7777777654 45556666666666 355 6666664432 22366677777777777777777777777765422
Q ss_pred -CCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHHHCCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhH
Q 002666 398 -RPNNTTYNVLIDMLCKAGNFE-DALKFRDAMKEAGLFPNV-MTVNIMVDRLCKAQKLDEAFSIFEGMDHKTCTPDAVTF 474 (895)
Q Consensus 398 -~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 474 (895)
.|...+|..+ +.+.+... .|..-|.+ . ..++. .....++..+.+.++++.+.++.. +.|.....
T Consensus 279 ~~~~~~~~~~~---l~r~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~ 345 (987)
T PRK09782 279 TDAQEKSWLYL---LSKYSANPVQALANYTV--Q--FADNRQYVVGATLPVLLKEGQYDAAQKLLA------TLPANEML 345 (987)
T ss_pred CCCccHHHHHH---HHhccCchhhhccchhh--h--hHHHHHHHHHHHHHHHHhccHHHHHHHHhc------CCCcchHH
Confidence 2223333322 22333322 11111111 0 01111 112223566677777775555522 22222222
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-C-CCCCHhhHHHHHHHHH
Q 002666 475 CSLIDGLGKNGRVDDAYKFYEKMLDTDQIPNAILYTSLIRNFFKHGRKEDGHKIYKEMVQR-G-CSPDLMLLNTYMDCVF 552 (895)
Q Consensus 475 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~-~~~~~~~~~~l~~~~~ 552 (895)
..-..+....+...++...+..+.+..+ .+......+.....+.|+.++|..+|+..... + -..+......++..|.
T Consensus 346 ~~r~~~~~~~~~~~~~~~~~~~~y~~~~-~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 424 (987)
T PRK09782 346 EERYAVSVATRNKAEALRLARLLYQQEP-ANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLE 424 (987)
T ss_pred HHHHhhccccCchhHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHH
Confidence 1111122234566666666666666532 35556666666777777788888877777652 1 1123334446666676
Q ss_pred HcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH---HHHHHHHHHcCCCC--CHHhHHHHHHHHHccCCh
Q 002666 553 KAGETEKGRALFEEIKAQGFVPDVQSYSILIHGLVKAGFAHET---DQLFYAMKKQGCVL--DTRAYNTVVDGFCKSGKV 627 (895)
Q Consensus 553 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A---~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~ 627 (895)
+.+......++..-.. +++...- +.-.|+..++ ...+..+.... ++ +...|..+..++.. ++.
T Consensus 425 ~~~~~~~~~~~~~l~~----~~~~~~~------~~~~~~~~~~~~~~~~~~~al~~~-p~~~~~~a~~~LG~~l~~-~~~ 492 (987)
T PRK09782 425 SHPYLATPAKVAILSK----PLPLAEQ------RQWQSQLPGIADNCPAIVRLLGDM-SPSYDAAAWNRLAKCYRD-TLP 492 (987)
T ss_pred hCCcccchHHHHHhcc----ccccchh------HHHHhhhhhhhhhHHHHHHhcccC-CCCCCHHHHHHHHHHHHh-CCc
Confidence 6666333332221111 1111111 1112233222 22333333321 34 56777788877776 788
Q ss_pred HHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 002666 628 NKAYQLLEEMKTKGHYPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNTVIYSSLIDGFGKVGRIDEAYLIMEEL 707 (895)
Q Consensus 628 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 707 (895)
++|+..+.+.... .|+......+...+...|++++|...|+++... +|+...+..++..+.+.|++++|...++.+
T Consensus 493 ~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qA 568 (987)
T PRK09782 493 GVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQA 568 (987)
T ss_pred HHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 8899888877765 355444444455556889999999999887654 344455666777888889999999999998
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-CH
Q 002666 708 MQKGLTPNAYTWNCLLDALVKAEEISEAFVCFQSMKDLKCTPNHVTYSIIINGLCRVRKFNKAFVFWQEMQKQGFKP-NT 786 (895)
Q Consensus 708 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~ 786 (895)
++.. +++...+..+.......|++++|...+++.++. .|+...|..+..++.+.|++++|+..+++..+. .| +.
T Consensus 569 L~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l--~Pd~~ 643 (987)
T PRK09782 569 EQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALEL--EPNNS 643 (987)
T ss_pred HhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCH
Confidence 8853 223334444444555669999999999999884 467778888888999999999999999998874 44 46
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 002666 787 ITYTTMISGLAKAGNITEANGLFERFKENGGVP-DSACYNAMMEGLSNANRAMDAYTLFEETRRKGFNIHTKTCVILLDA 865 (895)
Q Consensus 787 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 865 (895)
..+..+..++...|++++|+..++++++ ..| ++..+..++.++...|++++|+..++++++.. |....+....+..
T Consensus 644 ~a~~nLG~aL~~~G~~eeAi~~l~~AL~--l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~-P~~a~i~~~~g~~ 720 (987)
T PRK09782 644 NYQAALGYALWDSGDIAQSREMLERAHK--GLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI-DNQALITPLTPEQ 720 (987)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCchhhhhhhHH
Confidence 6788888888999999999999999988 667 68888899999999999999999999998874 5566777778888
Q ss_pred HHhcCCHHHHHHHHHH
Q 002666 866 LHKAECLEQAAIVGAV 881 (895)
Q Consensus 866 ~~~~g~~~~A~~~~~~ 881 (895)
..+..+++.|.+-.++
T Consensus 721 ~~~~~~~~~a~~~~~r 736 (987)
T PRK09782 721 NQQRFNFRRLHEEVGR 736 (987)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888888887764443
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=100.00 E-value=8.4e-26 Score=257.39 Aligned_cols=682 Identities=10% Similarity=-0.019 Sum_probs=389.2
Q ss_pred CCcchHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCChhHHHHHH
Q 002666 136 KNFEPLEEILGEMSLAGIGPTNNTCIELVVSCVKSKMLREAFDIIQTMRKFKFRPAFTAYTTLIGALATVRESNLMLNLF 215 (895)
Q Consensus 136 ~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 215 (895)
|++++|...|++..+.. |.+..++..|...|.+.|+.++|...+++..+.. |+...+..++..+ +++++|..+|
T Consensus 58 Gd~~~A~~~l~~Al~~d-P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld--P~n~~~~~~La~i---~~~~kA~~~y 131 (987)
T PRK09782 58 NDEATAIREFEYIHQQV-PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH--PGDARLERSLAAI---PVEVKSVTTV 131 (987)
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHHHHHHHh---ccChhHHHHH
Confidence 45555555555544432 2224444455555555555555555555554442 2222222222111 6666666666
Q ss_pred HHHHHcCCCcCHHHHHHHHHH--------HHhcCChhHHHHHHHHHHhCCCCCChHhHH-HHHHHHHhcCChhhHHHHHH
Q 002666 216 HQMQELGYEVSVHLFTTLIRV--------FAREGRVDDALFLLDEMKNNAFSVDIVLYN-VCIDCFGKVGKVDMAWKFFH 286 (895)
Q Consensus 216 ~~~~~~~~~~~~~~~~~l~~~--------~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~ 286 (895)
+++.... +-+..++..++.. |.+. ++|...++ .......|+..+.. .+..+|.+.|++++|++++.
T Consensus 132 e~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~ 206 (987)
T PRK09782 132 EELLAQQ-KACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYN 206 (987)
T ss_pred HHHHHhC-CCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 6666652 3344555555544 3333 44444443 22222233333333 33667777777777777777
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHh-cCCHhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhcCCC-
Q 002666 287 EMKAQGVAPDDVTYTSMIGVLCK-SKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLFERLKQKGCI- 364 (895)
Q Consensus 287 ~~~~~g~~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~- 364 (895)
++.+.+.. +......|..+|.. .++ +++..+++..++ .+...+..++..|.+.|+.++|.+++.++......
T Consensus 207 ~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk----~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~ 280 (987)
T PRK09782 207 EARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQGIF----TDPQSRITYATALAYRGEKARLQHYLIENKPLFTTD 280 (987)
T ss_pred HHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhchhcc----cCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCC
Confidence 77766433 34445556566665 355 666666443222 35666667777777777777777777766543222
Q ss_pred CCHHHHHHHHHHHHhcCCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHH
Q 002666 365 PSVIAYNSLLTCLGKKGRVT-EAMKIFEAMKKDARPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEAGLFPNVMTVNIMV 443 (895)
Q Consensus 365 ~~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 443 (895)
|+..++..+ +.+.+... .|..-|.+ +..+.-......++..+.+.++++.+.++.. +.|.......-.
T Consensus 281 ~~~~~~~~~---l~r~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~r~ 349 (987)
T PRK09782 281 AQEKSWLYL---LSKYSANPVQALANYTV--QFADNRQYVVGATLPVLLKEGQYDAAQKLLA------TLPANEMLEERY 349 (987)
T ss_pred CccHHHHHH---HHhccCchhhhccchhh--hhHHHHHHHHHHHHHHHHhccHHHHHHHHhc------CCCcchHHHHHH
Confidence 333333332 22333221 11111111 1111122234445677777777775554421 223222211111
Q ss_pred HHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCC--CCcchhhHHHHHHHHHhcCC
Q 002666 444 DRLCKAQKLDEAFSIFEGMDHKTCTPDAVTFCSLIDGLGKNGRVDDAYKFYEKMLDTD--QIPNAILYTSLIRNFFKHGR 521 (895)
Q Consensus 444 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~ 521 (895)
.+....+...++...+..|.... +-+......+.-...+.|+.++|.++|+...... ...+......++..|.+.+.
T Consensus 350 ~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 428 (987)
T PRK09782 350 AVSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPY 428 (987)
T ss_pred hhccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCc
Confidence 11223355666666666665542 2255555556666677788888888888876631 11233344567777777766
Q ss_pred HHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhHHH---HHHHHHHHCCCCC--CHHHHHHHHHHHHhcCChHHHH
Q 002666 522 KEDGHKIYKEMVQRGCSPDLMLLNTYMDCVFKAGETEKGR---ALFEEIKAQGFVP--DVQSYSILIHGLVKAGFAHETD 596 (895)
Q Consensus 522 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~---~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~ 596 (895)
.....+...-. .+.+...- +.-.|+..++. ..+..+.... ++ +...+..+..++.. ++..+|.
T Consensus 429 ~~~~~~~~~l~----~~~~~~~~------~~~~~~~~~~~~~~~~~~~al~~~-p~~~~~~a~~~LG~~l~~-~~~~eAi 496 (987)
T PRK09782 429 LATPAKVAILS----KPLPLAEQ------RQWQSQLPGIADNCPAIVRLLGDM-SPSYDAAAWNRLAKCYRD-TLPGVAL 496 (987)
T ss_pred ccchHHHHHhc----cccccchh------HHHHhhhhhhhhhHHHHHHhcccC-CCCCCHHHHHHHHHHHHh-CCcHHHH
Confidence 33333222111 11111111 11123333333 2333333221 23 56667777777766 7777788
Q ss_pred HHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 002666 597 QLFYAMKKQGCVLDTRAYNTVVDGFCKSGKVNKAYQLLEEMKTKGHYPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKG 676 (895)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 676 (895)
..+.+.... .|+......+...+...|++++|...++++... .|+...+..+..++.+.|++++|...++++++.+
T Consensus 497 ~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~ 572 (987)
T PRK09782 497 YAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG 572 (987)
T ss_pred HHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 877777665 355444444455556788888888888887654 3344455566777788888888888888888764
Q ss_pred CCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHH
Q 002666 677 IELNTVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNAYTWNCLLDALVKAEEISEAFVCFQSMKDLKCTPNHVTYSI 756 (895)
Q Consensus 677 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 756 (895)
+.....+..+.......|++++|...+++.++ ..|+...+..++.++.+.|++++|+..+++.+... +.+...++.
T Consensus 573 -P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~n 648 (987)
T PRK09782 573 -LGDNALYWWLHAQRYIPGQPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAA 648 (987)
T ss_pred -CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 33333444444445556888888888888887 44667778888888888888888888888888744 334566777
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcC
Q 002666 757 IINGLCRVRKFNKAFVFWQEMQKQGFKPNTITYTTMISGLAKAGNITEANGLFERFKENGGVP-DSACYNAMMEGLSNAN 835 (895)
Q Consensus 757 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g 835 (895)
+..++...|++++|++.+++..+. .+-+...+..+..++...|++++|+..++++++ ..| +..+....++...+..
T Consensus 649 LG~aL~~~G~~eeAi~~l~~AL~l-~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~--l~P~~a~i~~~~g~~~~~~~ 725 (987)
T PRK09782 649 LGYALWDSGDIAQSREMLERAHKG-LPDDPALIRQLAYVNQRLDDMAATQHYARLVID--DIDNQALITPLTPEQNQQRF 725 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCCchhhhhhhHHHHHHH
Confidence 888888888888888888888874 233467788888888888888888888888887 667 4566667777777777
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC
Q 002666 836 RAMDAYTLFEETRRKGFNIHTKTCVILLDALHKAEC 871 (895)
Q Consensus 836 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 871 (895)
+++.|.+-++..... .++..+....+.++...++
T Consensus 726 ~~~~a~~~~~r~~~~--~~~~~a~~~~g~~~~~~~~ 759 (987)
T PRK09782 726 NFRRLHEEVGRRWTF--SFDSSIGLRSGAMSTANNN 759 (987)
T ss_pred HHHHHHHHHHHHhhc--CccchhccccchHhhhccc
Confidence 888888877776654 3443344445555544433
No 13
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.98 E-value=2.1e-25 Score=235.36 Aligned_cols=688 Identities=14% Similarity=0.093 Sum_probs=327.2
Q ss_pred HHHHHHHHHHHHccCCcchHHHHHHHHHHc-CC---CCCh---hhHHHHHHHHHhcC-----------ChHHHHHHHHHH
Q 002666 122 LEAYNSLLMVMAVSKNFEPLEEILGEMSLA-GI---GPTN---NTCIELVVSCVKSK-----------MLREAFDIIQTM 183 (895)
Q Consensus 122 ~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~-~~---~~~~---~~~~~l~~~~~~~~-----------~~~~A~~~~~~~ 183 (895)
.++|..++..|..+|+++++..+++.-... +. .+.. .+++.|...++..+ ....|..+|+..
T Consensus 41 le~wi~~AleYy~~gk~eefi~iLE~g~~~~~~~y~d~~~~~~~a~~~laay~s~~a~kek~~~~k~e~~~~at~~~~~A 120 (1018)
T KOG2002|consen 41 LEAWIEIALEYYKQGKTEEFIKILESGLIDANEEYADVKSDQMKALDILAAYYSQLAMKEKKKDEKDELFDKATLLFDLA 120 (1018)
T ss_pred hhHHHHHHHHHHhcccHHHHHHHHHhhhhcccchhcchHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhhHH
Confidence 478999999999999999999999876521 10 1111 12233333232111 122333334333
Q ss_pred HhCCCCcCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC--CCC
Q 002666 184 RKFKFRPAFT-AYTTLIGALATVRESNLMLNLFHQMQELGYEVSVHLFTTLIRVFAREGRVDDALFLLDEMKNNA--FSV 260 (895)
Q Consensus 184 ~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~ 260 (895)
.+.....+.. ........+......+.|...|..+.... +++...+..-+......|+|..|+.+|..++... ..+
T Consensus 121 ~ki~m~~~~~l~~~~~~~l~~~~~~~~~A~a~F~~Vl~~s-p~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~a 199 (1018)
T KOG2002|consen 121 DKIDMYEDSHLLVQRGFLLLEGDKSMDDADAQFHFVLKQS-PDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKA 199 (1018)
T ss_pred HHhhccCcchhhhhhhhhhhcCCccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCC
Confidence 3222111111 11111111111112356666666665542 3444444444444555566666666666655433 223
Q ss_pred ChHhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCC-HHHHHHHHHHHH---hcCCHhHHHHHHHHHhhCCCCCCHHhHH
Q 002666 261 DIVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGVAPD-DVTYTSMIGVLC---KSKRLEEAVAMFEQMDRNREVPCAYAYN 336 (895)
Q Consensus 261 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~---~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 336 (895)
|+.+ .+..++.+.|+.+.|...|.++.+. .|+ +.++..|...-. ....+..+..++...-..++. ++.+.+
T Consensus 200 D~rI--gig~Cf~kl~~~~~a~~a~~ralqL--dp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~-nP~~l~ 274 (1018)
T KOG2002|consen 200 DVRI--GIGHCFWKLGMSEKALLAFERALQL--DPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNE-NPVALN 274 (1018)
T ss_pred Cccc--hhhhHHHhccchhhHHHHHHHHHhc--ChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCC-CcHHHH
Confidence 3322 3445556666666666666666654 222 222222222211 122344555555555544443 555666
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHh
Q 002666 337 TMIMGYGSVGKFDEAFSLFERLKQKGCIP--SVIAYNSLLTCLGKKGRVTEAMKIFEAMKKDARPN-NTTYNVLIDMLCK 413 (895)
Q Consensus 337 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~ 413 (895)
.|..-|.-.|++..+..+...+....... -...|..++++|-..|++++|...|.+..+..+.+ ...+..+++.+.+
T Consensus 275 ~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~ 354 (1018)
T KOG2002|consen 275 HLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIK 354 (1018)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHH
Confidence 66666666666666666666555542110 12235556666666666666666666655555444 4455556666666
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC----ChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhhcCCHHH
Q 002666 414 AGNFEDALKFRDAMKEAGLFPNVMTVNIMVDRLCKAQ----KLDEAFSIFEGMDHKTCTPDAVTFCSLIDGLGKNGRVDD 489 (895)
Q Consensus 414 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 489 (895)
.|+++.+...|+++.+.. +.+..+...+...|...+ ..+.|..++.+..+.. +.|...|..+...+....-+.
T Consensus 355 ~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~- 431 (1018)
T KOG2002|consen 355 RGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWA- 431 (1018)
T ss_pred hchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHH-
Confidence 666666666666665542 223344444444444443 3445555555554442 234555555555544433222
Q ss_pred HHHHHHHHH----hCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCCHhhHHHHHHHHHHcCChhHHHH
Q 002666 490 AYKFYEKML----DTDQIPNAILYTSLIRNFFKHGRKEDGHKIYKEMVQR---GCSPDLMLLNTYMDCVFKAGETEKGRA 562 (895)
Q Consensus 490 A~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~ 562 (895)
++..|..++ ..+..+.+...+.++..++..|.+++|...|...... ...+|..
T Consensus 432 sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~-------------------- 491 (1018)
T KOG2002|consen 432 SLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEG-------------------- 491 (1018)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCcccc--------------------
Confidence 244444433 2232344455555555555555555555555555443 1111110
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCC
Q 002666 563 LFEEIKAQGFVPDVQSYSILIHGLVKAGFAHETDQLFYAMKKQGCVLDTRAYNTVVDGFCKSGKVNKAYQLLEEMKTKGH 642 (895)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 642 (895)
-.++..+-..+...+...++.+.|.+.|..+++.. +.-...|..++......++..+|...+......+
T Consensus 492 ---------~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d- 560 (1018)
T KOG2002|consen 492 ---------KSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNID- 560 (1018)
T ss_pred ---------ccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-
Confidence 00111111223333333444444444444444431 1112222222212222334444444444444332
Q ss_pred CCCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcC-CCcCHHHHHHHHHHHH------------ccCCHHHHHHHHHHHHH
Q 002666 643 YPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKG-IELNTVIYSSLIDGFG------------KVGRIDEAYLIMEELMQ 709 (895)
Q Consensus 643 ~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~------------~~g~~~~A~~~~~~~~~ 709 (895)
..++..++.+...+.+...+..|.+-|..+.+.- ..+|+....+|++.|. ..+..++|+++|.++++
T Consensus 561 ~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~ 640 (1018)
T KOG2002|consen 561 SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR 640 (1018)
T ss_pred cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh
Confidence 1233334444444444444444444444333321 1123333333333222 12345556666666665
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHC-CCCCCHHH
Q 002666 710 KGLTPNAYTWNCLLDALVKAEEISEAFVCFQSMKDLKCTPNHVTYSIIINGLCRVRKFNKAFVFWQEMQKQ-GFKPNTIT 788 (895)
Q Consensus 710 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~ 788 (895)
.. +-|..+-|.++.+++..|++.+|..+|.++.+.. .....+|-.++.+|...|+|..|+++|+...+. .-..+..+
T Consensus 641 ~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~v 718 (1018)
T KOG2002|consen 641 ND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEV 718 (1018)
T ss_pred cC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHH
Confidence 32 1155555666666666666666666666666532 123334555666666666666666666655554 22334555
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHH-------------------HHhcCCHHHHHHHHHHHH
Q 002666 789 YTTMISGLAKAGNITEANGLFERFKENGGVP-DSACYNAMMEG-------------------LSNANRAMDAYTLFEETR 848 (895)
Q Consensus 789 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~-------------------~~~~g~~~~A~~~~~~~~ 848 (895)
...|.+++.+.|.+.+|.+.+..+.. ..| ++.....++-+ ....+..+.|.++|.++-
T Consensus 719 l~~Lara~y~~~~~~eak~~ll~a~~--~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls 796 (1018)
T KOG2002|consen 719 LHYLARAWYEAGKLQEAKEALLKARH--LAPSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELS 796 (1018)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHH--hCCccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666666666666666655555 333 22222222211 222345678888888887
Q ss_pred HCCCC
Q 002666 849 RKGFN 853 (895)
Q Consensus 849 ~~~~~ 853 (895)
..+.+
T Consensus 797 ~~~d~ 801 (1018)
T KOG2002|consen 797 KNGDK 801 (1018)
T ss_pred hcCCC
Confidence 77544
No 14
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.97 E-value=5e-25 Score=232.49 Aligned_cols=581 Identities=13% Similarity=0.059 Sum_probs=372.4
Q ss_pred hhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHH
Q 002666 278 VDMAWKFFHEMKAQGVAPDDVTYTSMIGVLCKSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLFER 357 (895)
Q Consensus 278 ~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 357 (895)
++.|...|....+.. ++|...+..-.......|+|-.|+.+|..++...+..-......++.++.+.|+.+.|+..|.+
T Consensus 146 ~~~A~a~F~~Vl~~s-p~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~r 224 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQS-PDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFER 224 (1018)
T ss_pred HHHHHHHHHHHHhhC-CcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHH
Confidence 355666666555542 2233333333334445566666666666655544332233333444555566666666666666
Q ss_pred HHhcCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 002666 358 LKQKGCIPSVIAYNSLLTCLGKKG---RVTEAMKIFEAMKKDARPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEAGLFP 434 (895)
Q Consensus 358 ~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 434 (895)
+.+.++ .++.++..|...-.... .+..+..++...-...+.|+.+.+.|...|.-.|+++.+..+...+.......
T Consensus 225 alqLdp-~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~ 303 (1018)
T KOG2002|consen 225 ALQLDP-TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENK 303 (1018)
T ss_pred HHhcCh-hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhh
Confidence 666542 13333333333322222 24445555555555566666666666666666666666666666665432110
Q ss_pred --ChhhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcchhhHHHH
Q 002666 435 --NVMTVNIMVDRLCKAQKLDEAFSIFEGMDHKTCTPDAVTFCSLIDGLGKNGRVDDAYKFYEKMLDTDQIPNAILYTSL 512 (895)
Q Consensus 435 --~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 512 (895)
-...|..+.++|...|++++|...|.+..+.........+..+++.+.+.|+++.+...|+++....+ .+..+...|
T Consensus 304 ~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p-~~~etm~iL 382 (1018)
T KOG2002|consen 304 SIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLP-NNYETMKIL 382 (1018)
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCc-chHHHHHHH
Confidence 11235556666666666666666666655543221133445566666666677776666666666543 355555566
Q ss_pred HHHHHhcC----CHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHH----HCCCCCCHHHHHHHHH
Q 002666 513 IRNFFKHG----RKEDGHKIYKEMVQRGCSPDLMLLNTYMDCVFKAGETEKGRALFEEIK----AQGFVPDVQSYSILIH 584 (895)
Q Consensus 513 ~~~~~~~~----~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~ 584 (895)
+..|...+ ..+.|..++...++.. +.|...|..+...+. .++...++..|..+. ..+-.+.+...|.+..
T Consensus 383 G~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e-~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvas 460 (1018)
T KOG2002|consen 383 GCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLE-QTDPWASLDAYGNALDILESKGKQIPPEVLNNVAS 460 (1018)
T ss_pred HhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHH-hcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHH
Confidence 66555553 3455555555555432 334444544444333 333333355554433 2333456666777777
Q ss_pred HHHhcCChHHHHHHHHHHHHc---CCCCCH------HhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCH-HhHHHHHH
Q 002666 585 GLVKAGFAHETDQLFYAMKKQ---GCVLDT------RAYNTVVDGFCKSGKVNKAYQLLEEMKTKGHYPTV-VTYGSVID 654 (895)
Q Consensus 585 ~~~~~g~~~~A~~~~~~~~~~---~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~ 654 (895)
.....|.+++|...|...... ...++. .+-..+....-..++.+.|.+.+..+.+. .|.- ..|..++.
T Consensus 461 lhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ 538 (1018)
T KOG2002|consen 461 LHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGC 538 (1018)
T ss_pred HHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhH
Confidence 777777777777777766554 111222 22334556666788999999999999987 3443 34555544
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHh-----
Q 002666 655 GLAKIDRLDEAYMLFEEAKSKGIELNTVIYSSLIDGFGKVGRIDEAYLIMEELMQKG-LTPNAYTWNCLLDALVK----- 728 (895)
Q Consensus 655 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~~~~----- 728 (895)
.....+...+|...++.+...+ ..++..++-++..+.+...+..|.+-|+...+.- -.+|+++..+|++.|..
T Consensus 539 ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~ 617 (1018)
T KOG2002|consen 539 MARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNP 617 (1018)
T ss_pred HHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhccc
Confidence 4445678899999999998865 5677888888889999889999999887777632 23688888888887653
Q ss_pred -------cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 002666 729 -------AEEISEAFVCFQSMKDLKCTPNHVTYSIIINGLCRVRKFNKAFVFWQEMQKQGFKPNTITYTTMISGLAKAGN 801 (895)
Q Consensus 729 -------~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 801 (895)
.+..++|+++|.++++.. |.|.+.-|-++-+++..|++.+|..+|.+..+.. .....+|..+.++|..+|+
T Consensus 618 ~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~q 695 (1018)
T KOG2002|consen 618 SRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQ 695 (1018)
T ss_pred ccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHH
Confidence 345788999999999844 4566777788888999999999999999999863 3356789999999999999
Q ss_pred HHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc
Q 002666 802 ITEANGLFERFKENGGV-PDSACYNAMMEGLSNANRAMDAYTLFEETRRKGFNIHTKTCVILLDALHKA 869 (895)
Q Consensus 802 ~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 869 (895)
+..|+++|+.....-.. -++.+...|++++++.|++.+|.+.+..++... |.+....+.++-+..+.
T Consensus 696 y~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~-p~~~~v~FN~a~v~kkl 763 (1018)
T KOG2002|consen 696 YRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLA-PSNTSVKFNLALVLKKL 763 (1018)
T ss_pred HHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-CccchHHhHHHHHHHHH
Confidence 99999999999886443 378999999999999999999999999988874 77776666666655443
No 15
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.96 E-value=4.6e-25 Score=220.31 Aligned_cols=463 Identities=15% Similarity=0.120 Sum_probs=359.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhh
Q 002666 404 YNVLIDMLCKAGNFEDALKFRDAMKEAGLFPNVMTVNIMVDRLCKAQKLDEAFSIFEGMDHKTCTPDAVTFCSLIDGLGK 483 (895)
Q Consensus 404 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 483 (895)
...|+.-..+.|++++|++.....-..+ +.+....-.+-..+.+..+++.....-....+.. +.-..+|..+++.+-.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHH
Confidence 3445555566677777776555443332 1122223333344555555555544433333332 2246678888888888
Q ss_pred cCCHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhh-HHHHHHHHHHcCChhHHHH
Q 002666 484 NGRVDDAYKFYEKMLDTDQIPNAILYTSLIRNFFKHGRKEDGHKIYKEMVQRGCSPDLML-LNTYMDCVFKAGETEKGRA 562 (895)
Q Consensus 484 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~ 562 (895)
.|++++|+..|+.+++..+ .....|..++.++...|+.+.|...|.+.++. .|+... ...+...+-..|+.++|..
T Consensus 129 rg~~~~al~~y~~aiel~p-~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~ 205 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELKP-KFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKA 205 (966)
T ss_pred hchHHHHHHHHHHHHhcCc-hhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHH
Confidence 8888888888888888765 37778888888888888888888888888875 455443 3344455566788999988
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCC
Q 002666 563 LFEEIKAQGFVPDVQSYSILIHGLVKAGFAHETDQLFYAMKKQGCVLDTRAYNTVVDGFCKSGKVNKAYQLLEEMKTKGH 642 (895)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 642 (895)
.+.++++... -=.+.|+.|...+-..|+...|...|++.++.+ +.=..+|-.|...|...+.++.|+..+.+....
T Consensus 206 cYlkAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld-P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l-- 281 (966)
T KOG4626|consen 206 CYLKAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD-PNFLDAYINLGNVYKEARIFDRAVSCYLRALNL-- 281 (966)
T ss_pred HHHHHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhcCC-CcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--
Confidence 8888877631 234678888888889999999999999998864 223568888999999999999999999988876
Q ss_pred CC-CHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-CHHHHH
Q 002666 643 YP-TVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNTVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTP-NAYTWN 720 (895)
Q Consensus 643 ~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~ 720 (895)
.| ....+..+...|..+|..+-|+..++++++.. +.-+..|+.|..++...|++.+|...|.+.+.. .| ...+.+
T Consensus 282 rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--~p~hadam~ 358 (966)
T KOG4626|consen 282 RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRL--CPNHADAMN 358 (966)
T ss_pred CCcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHh--CCccHHHHH
Confidence 34 45577788888999999999999999999874 345789999999999999999999999999984 34 577888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHh
Q 002666 721 CLLDALVKAEEISEAFVCFQSMKDLKCTPNH-VTYSIIINGLCRVRKFNKAFVFWQEMQKQGFKPN-TITYTTMISGLAK 798 (895)
Q Consensus 721 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~ 798 (895)
.|+.+|...|.+++|..+|....+ +.|.. ...+.|...|-.+|++++|+..|++.++ +.|+ ..+|+.++..|-.
T Consensus 359 NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke 434 (966)
T KOG4626|consen 359 NLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKE 434 (966)
T ss_pred HHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHH
Confidence 999999999999999999999988 55654 5688999999999999999999999997 7888 4689999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHH
Q 002666 799 AGNITEANGLFERFKENGGVPD-SACYNAMMEGLSNANRAMDAYTLFEETRRKGFNIHTKTCVILLDALHKAECLEQAAI 877 (895)
Q Consensus 799 ~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 877 (895)
.|+.+.|++.+.+++. +.|. ......|+..|-..|+..+|+.-|++.++.. |..+.++-.++.++.-..+|.+=.+
T Consensus 435 ~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklk-PDfpdA~cNllh~lq~vcdw~D~d~ 511 (966)
T KOG4626|consen 435 MGDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLK-PDFPDAYCNLLHCLQIVCDWTDYDK 511 (966)
T ss_pred hhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccC-CCCchhhhHHHHHHHHHhcccchHH
Confidence 9999999999999998 8884 7789999999999999999999999999873 5567778888888877777776544
Q ss_pred HHHHHHHH
Q 002666 878 VGAVLRET 885 (895)
Q Consensus 878 ~~~~l~~~ 885 (895)
..+++.+.
T Consensus 512 ~~~kl~si 519 (966)
T KOG4626|consen 512 RMKKLVSI 519 (966)
T ss_pred HHHHHHHH
Confidence 44444433
No 16
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.96 E-value=5.9e-25 Score=219.55 Aligned_cols=447 Identities=15% Similarity=0.133 Sum_probs=300.7
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 002666 335 YNTMIMGYGSVGKFDEAFSLFERLKQKGCIPSVIAYNSLLTCLGKKGRVTEAMKIFEAMKKDARPNNTTYNVLIDMLCKA 414 (895)
Q Consensus 335 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 414 (895)
...|..-..+.|++.+|++....+-..+. .+......+-..+.+..+.+.....-....+..|.-..+|..++..+-..
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d~-t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~ker 129 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQEDP-TNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKER 129 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccCC-CcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHh
Confidence 33444444555555555555544444321 12222222333344444444444433333444444444555555555555
Q ss_pred CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhhcCCHHHHHHHH
Q 002666 415 GNFEDALKFRDAMKEAGLFPNVMTVNIMVDRLCKAQKLDEAFSIFEGMDHKTCTPDAVTFCSLIDGLGKNGRVDDAYKFY 494 (895)
Q Consensus 415 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 494 (895)
|++++|+.+++.+++.. |+ ....|..++.++...|+.+.|...|
T Consensus 130 g~~~~al~~y~~aiel~--p~----------------------------------fida~inla~al~~~~~~~~a~~~~ 173 (966)
T KOG4626|consen 130 GQLQDALALYRAAIELK--PK----------------------------------FIDAYINLAAALVTQGDLELAVQCF 173 (966)
T ss_pred chHHHHHHHHHHHHhcC--ch----------------------------------hhHHHhhHHHHHHhcCCCcccHHHH
Confidence 55555555555554432 21 3344444555555555555555555
Q ss_pred HHHHhCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC
Q 002666 495 EKMLDTDQIPNAILYTSLIRNFFKHGRKEDGHKIYKEMVQRGCSPDLMLLNTYMDCVFKAGETEKGRALFEEIKAQGFVP 574 (895)
Q Consensus 495 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 574 (895)
.+.++.++. ..-+...++..+...|+.++|...|.+.++.. +-=...|..+...+..+|+...|+..|+++.+. .|
T Consensus 174 ~~alqlnP~-l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP 249 (966)
T KOG4626|consen 174 FEALQLNPD-LYCARSDLGNLLKAEGRLEEAKACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DP 249 (966)
T ss_pred HHHHhcCcc-hhhhhcchhHHHHhhcccchhHHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CC
Confidence 555444321 22223334444444555555555555444431 112334555555555566666666666666554 33
Q ss_pred C-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHhHHHHH
Q 002666 575 D-VQSYSILIHGLVKAGFAHETDQLFYAMKKQGCVLDTRAYNTVVDGFCKSGKVNKAYQLLEEMKTKGHYPTVVTYGSVI 653 (895)
Q Consensus 575 ~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 653 (895)
+ ...|..|...|...+.++.|...+.+..... +....++..+...|...|..+.|+..+++.++..+. -...|+.+.
T Consensus 250 ~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~Nla 327 (966)
T KOG4626|consen 250 NFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLA 327 (966)
T ss_pred cchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHH
Confidence 3 4567777777777888888888887777652 334677778888889999999999999999987332 466899999
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCH
Q 002666 654 DGLAKIDRLDEAYMLFEEAKSKGIELNTVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTP-NAYTWNCLLDALVKAEEI 732 (895)
Q Consensus 654 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~ 732 (895)
.++...|++.+|...+.+++... +......+.|...|...|.+++|..+|...++ +.| -....+.|+..|-.+|++
T Consensus 328 nALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl 404 (966)
T KOG4626|consen 328 NALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNL 404 (966)
T ss_pred HHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccH
Confidence 99999999999999999999874 44567888999999999999999999999998 456 466788899999999999
Q ss_pred HHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHH
Q 002666 733 SEAFVCFQSMKDLKCTPNH-VTYSIIINGLCRVRKFNKAFVFWQEMQKQGFKPN-TITYTTMISGLAKAGNITEANGLFE 810 (895)
Q Consensus 733 ~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~ 810 (895)
++|+..|++++. +.|+. .+|+.+...|-..|+.+.|+..+.++.. +.|. ...++.|...|...|++.+|+..|+
T Consensus 405 ~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY~ 480 (966)
T KOG4626|consen 405 DDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSYR 480 (966)
T ss_pred HHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHHH
Confidence 999999999998 66776 6899999999999999999999999987 5676 5789999999999999999999999
Q ss_pred HHHHCCCCCC-HHHHHHHHHHHHh
Q 002666 811 RFKENGGVPD-SACYNAMMEGLSN 833 (895)
Q Consensus 811 ~~~~~~~~p~-~~~~~~l~~~~~~ 833 (895)
.+++ +.|| +..|..++.++.-
T Consensus 481 ~aLk--lkPDfpdA~cNllh~lq~ 502 (966)
T KOG4626|consen 481 TALK--LKPDFPDAYCNLLHCLQI 502 (966)
T ss_pred HHHc--cCCCCchhhhHHHHHHHH
Confidence 9998 8885 6777777776543
No 17
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.92 E-value=2.9e-18 Score=180.88 Aligned_cols=664 Identities=13% Similarity=0.107 Sum_probs=317.0
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChh
Q 002666 200 GALATVRESNLMLNLFHQMQELGYEVSVHLFTTLIRVFAREGRVDDALFLLDEMKNNAFSVDIVLYNVCIDCFGKVGKVD 279 (895)
Q Consensus 200 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 279 (895)
+.+...|++++|..++.+++... +.....|..|+.+|-.+|+.+++...+-.+.... +.|...|-.+.....+.|+++
T Consensus 147 N~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~ 224 (895)
T KOG2076|consen 147 NNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNIN 224 (895)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHH
Confidence 33334456666666665555543 3445555555555555555555555554444333 334455555555555555566
Q ss_pred hHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCCHHhH----HHHHHHHHccCCHHHHHHHH
Q 002666 280 MAWKFFHEMKAQGVAPDDVTYTSMIGVLCKSKRLEEAVAMFEQMDRNREVPCAYAY----NTMIMGYGSVGKFDEAFSLF 355 (895)
Q Consensus 280 ~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~g~~~~A~~~~ 355 (895)
+|.-+|.++++.. +++...+-.-...|-+.|+...|.+.|.++....+..|..-. ...++.+...++.+.|.+.+
T Consensus 225 qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~l 303 (895)
T KOG2076|consen 225 QARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKAL 303 (895)
T ss_pred HHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 6665555555542 123333333444555555555555555555554442122111 12233344445555555555
Q ss_pred HHHHhcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--CC
Q 002666 356 ERLKQKG-CIPSVIAYNSLLTCLGKKGRVTEAMKIFEAMKK-DARPNNTTYNVLIDMLCKAGNFEDALKFRDAMKE--AG 431 (895)
Q Consensus 356 ~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~ 431 (895)
+.....+ -.-+...++.++..+.+...++.|......... ...+|..-|.+--. ++ ..+.-... .+
T Consensus 304 e~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~-----~~-----~~~~~~~~~~~~ 373 (895)
T KOG2076|consen 304 EGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDER-----RR-----EEPNALCEVGKE 373 (895)
T ss_pred HHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhh-----cc-----ccccccccCCCC
Confidence 5544421 111233444555555555555555555444432 11122111100000 00 00000000 00
Q ss_pred CCCChhhHHHHHHHHHhcCChhHHHHHHHHhhhCC--CCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcchhhH
Q 002666 432 LFPNVMTVNIMVDRLCKAQKLDEAFSIFEGMDHKT--CTPDAVTFCSLIDGLGKNGRVDDAYKFYEKMLDTDQIPNAILY 509 (895)
Q Consensus 432 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 509 (895)
+.++... -.+.-++.+....+....+........ +..+...|..+..+|...|++.+|+.+|..+.......+...|
T Consensus 374 ~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw 452 (895)
T KOG2076|consen 374 LSYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVW 452 (895)
T ss_pred CCccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhh
Confidence 0001111 011112222222222222222222222 1122334445555555555555555555555544433444455
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHH--------CCCCCCHHHHHH
Q 002666 510 TSLIRNFFKHGRKEDGHKIYKEMVQRGCSPDLMLLNTYMDCVFKAGETEKGRALFEEIKA--------QGFVPDVQSYSI 581 (895)
Q Consensus 510 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~~~~~~~~~~~~ 581 (895)
..++.+|...|.+++|.+.|+..+... +.+...-..+...+.+.|+.++|.+.+..+.. .+..|+......
T Consensus 453 ~~~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~ 531 (895)
T KOG2076|consen 453 YKLARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAH 531 (895)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHH
Confidence 555555555555555555555554431 22333333444444555555555555544321 111222222222
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHc----------------------CCCCCHHhHHHHHHHHHccCChHHHHHHH-----
Q 002666 582 LIHGLVKAGFAHETDQLFYAMKKQ----------------------GCVLDTRAYNTVVDGFCKSGKVNKAYQLL----- 634 (895)
Q Consensus 582 l~~~~~~~g~~~~A~~~~~~~~~~----------------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~----- 634 (895)
....+...|+.++=......|+.. +..........++.+-.+.++.....+-.
T Consensus 532 r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~ 611 (895)
T KOG2076|consen 532 RCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTE 611 (895)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhh
Confidence 333344444444333322222211 01112222233333333333321111111
Q ss_pred -HHHHHCCCCCCH--HhHHHHHHHHHccCCHHHHHHHHHHHHHcCC-CcCH----HHHHHHHHHHHccCCHHHHHHHHHH
Q 002666 635 -EEMKTKGHYPTV--VTYGSVIDGLAKIDRLDEAYMLFEEAKSKGI-ELNT----VIYSSLIDGFGKVGRIDEAYLIMEE 706 (895)
Q Consensus 635 -~~~~~~~~~p~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~ 706 (895)
.-....+..-+. ..+.-++..+++.+++++|..+...+..... ..+. ..-...+.+.+..+++..|...++.
T Consensus 612 ~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~ 691 (895)
T KOG2076|consen 612 FRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRS 691 (895)
T ss_pred hhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 111111222111 2445567788999999999999888876531 1122 2233445567778999999999999
Q ss_pred HHHC-CC--CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCC
Q 002666 707 LMQK-GL--TP-NAYTWNCLLDALVKAEEISEAFVCFQSMKDLKCTPNHVTYSIIINGLCRVRKFNKAFVFWQEMQKQGF 782 (895)
Q Consensus 707 ~~~~-~~--~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 782 (895)
++.. +. .| -...||.......+.++-.--.+.+..+.......++..+..........+.+..|+..+-++...
T Consensus 692 ~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~-- 769 (895)
T KOG2076|consen 692 VITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQ-- 769 (895)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHh--
Confidence 8873 11 22 233455444445555544444444444443221112223333344556678899999988887763
Q ss_pred CCCHHHHHHHHH-HHH----------hcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 002666 783 KPNTITYTTMIS-GLA----------KAGNITEANGLFERFKENGGV-PDSACYNAMMEGLSNANRAMDAYTLFEETRRK 850 (895)
Q Consensus 783 ~p~~~~~~~l~~-~~~----------~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 850 (895)
.|+....+.++. ++. +.-..-.+..++.+..+.... -...++..++++|...|=..-|..+|++++..
T Consensus 770 ~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~ 849 (895)
T KOG2076|consen 770 NPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEV 849 (895)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCC
Confidence 465332222222 221 112344566666666653111 15678889999999999999999999999987
Q ss_pred C-----------CCCCHhhHHHHHHHHHhcCCHHHHHHHHH
Q 002666 851 G-----------FNIHTKTCVILLDALHKAECLEQAAIVGA 880 (895)
Q Consensus 851 ~-----------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 880 (895)
. ...-..+.+.|.-+|..+|+.+-|.++..
T Consensus 850 ~p~~~~~~~~d~~dLrkeAA~NL~LIY~~SGn~~lArqil~ 890 (895)
T KOG2076|consen 850 SPKDVTDPKEDNYDLRKEAAYNLHLIYKKSGNMQLARQILE 890 (895)
T ss_pred CccccccccCCcccHHHHHHhhhhhhhccCCcHHHHHHHHH
Confidence 2 11223556688899999999999998544
No 18
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.92 E-value=9.8e-20 Score=205.75 Aligned_cols=255 Identities=16% Similarity=0.053 Sum_probs=199.1
Q ss_pred cCChHHHHHHHHHHHHcC--CCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCCHHHHH
Q 002666 589 AGFAHETDQLFYAMKKQG--CVLDTRAYNTVVDGFCKSGKVNKAYQLLEEMKTKGHYPTVVTYGSVIDGLAKIDRLDEAY 666 (895)
Q Consensus 589 ~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~ 666 (895)
.+.+++|...|+...+.+ .+.....+..+...+...|++++|+..+++.++..+. ....|..+...+...|++++|.
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~ 385 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPR-VTQSYIKRASMNLELGDPDKAE 385 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHCCCHHHHH
Confidence 467888888888888754 1234566777888888899999999999998876322 4557778888888999999999
Q ss_pred HHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 002666 667 MLFEEAKSKGIELNTVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNAYTWNCLLDALVKAEEISEAFVCFQSMKDLK 746 (895)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 746 (895)
..|+++++.. +.+..++..++..+...|++++|+..|++.++.. +.+...+..++.++.+.|++++|+..|++.++..
T Consensus 386 ~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 463 (615)
T TIGR00990 386 EDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF 463 (615)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 9999988774 4567788888889999999999999999998842 2267778888889999999999999999988743
Q ss_pred CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCH-H-------HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 002666 747 CTPNHVTYSIIINGLCRVRKFNKAFVFWQEMQKQGFKPNT-I-------TYTTMISGLAKAGNITEANGLFERFKENGGV 818 (895)
Q Consensus 747 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~-------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 818 (895)
+.+...|+.+..++...|++++|++.|++..+. .|+. . .++..+..+...|++++|.++++++++ ..
T Consensus 464 -P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l--~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~--l~ 538 (615)
T TIGR00990 464 -PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL--EKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALI--ID 538 (615)
T ss_pred -CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cC
Confidence 345677888889999999999999999998874 3321 1 112222233446899999999999888 55
Q ss_pred C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 002666 819 P-DSACYNAMMEGLSNANRAMDAYTLFEETRRKG 851 (895)
Q Consensus 819 p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 851 (895)
| +..++..++..+.+.|++++|+.+|+++.+..
T Consensus 539 p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 539 PECDIAVATMAQLLLQQGDVDEALKLFERAAELA 572 (615)
T ss_pred CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 6 45678889999999999999999999987763
No 19
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.91 E-value=6.5e-20 Score=207.17 Aligned_cols=258 Identities=12% Similarity=-0.007 Sum_probs=211.8
Q ss_pred ccCChHHHHHHHHHHHHCCC-CC-CHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHH
Q 002666 623 KSGKVNKAYQLLEEMKTKGH-YP-TVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNTVIYSSLIDGFGKVGRIDEA 700 (895)
Q Consensus 623 ~~g~~~~A~~~~~~~~~~~~-~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 700 (895)
..+++++|.+.|++..+.+. .| ....+..+...+...|++++|+..++++++.. +.....|..++..+...|++++|
T Consensus 306 ~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA 384 (615)
T TIGR00990 306 ADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKA 384 (615)
T ss_pred hhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHH
Confidence 35789999999999997642 23 34567788888899999999999999999874 33566888889999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 002666 701 YLIMEELMQKGLTPNAYTWNCLLDALVKAEEISEAFVCFQSMKDLKCTPNHVTYSIIINGLCRVRKFNKAFVFWQEMQKQ 780 (895)
Q Consensus 701 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 780 (895)
+..|+++++.. +.+..++..++..+...|++++|+..|++.++.. +.+...+..++.++...|++++|+..+++.++.
T Consensus 385 ~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 462 (615)
T TIGR00990 385 EEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN 462 (615)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 99999999852 2368899999999999999999999999999854 345667778999999999999999999999874
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHH------HHHHHHH-HHhcCCHHHHHHHHHHHHHCCC
Q 002666 781 GFKPNTITYTTMISGLAKAGNITEANGLFERFKENGGVPD-SAC------YNAMMEG-LSNANRAMDAYTLFEETRRKGF 852 (895)
Q Consensus 781 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~------~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~ 852 (895)
.+.+...++.++.++...|++++|++.|+++++ +.|+ ... +...+.. +...|++++|+.++++++...
T Consensus 463 -~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~--l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~- 538 (615)
T TIGR00990 463 -FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIE--LEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID- 538 (615)
T ss_pred -CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-
Confidence 344578899999999999999999999999998 4442 111 1122222 334699999999999998884
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 002666 853 NIHTKTCVILLDALHKAECLEQAAIVGAVLRETAK 887 (895)
Q Consensus 853 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 887 (895)
|.+..++..+++++...|++++|.+.+++..+...
T Consensus 539 p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~ 573 (615)
T TIGR00990 539 PECDIAVATMAQLLLQQGDVDEALKLFERAAELAR 573 (615)
T ss_pred CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhc
Confidence 66677888999999999999999998888776654
No 20
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.91 E-value=2.7e-17 Score=166.39 Aligned_cols=607 Identities=13% Similarity=0.098 Sum_probs=482.6
Q ss_pred CChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhhHHHHH
Q 002666 206 RESNLMLNLFHQMQELGYEVSVHLFTTLIRVFAREGRVDDALFLLDEMKNNAFSVDIVLYNVCIDCFGKVGKVDMAWKFF 285 (895)
Q Consensus 206 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 285 (895)
++..+|.-++..+.+.+ |.++..|..-++.--..|++..|..+..+.-+.. +.+..+|.--+ +....+.|..+.
T Consensus 265 ~DikKaR~llKSvretn-P~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~c-prSeDvWLeai----RLhp~d~aK~vv 338 (913)
T KOG0495|consen 265 EDIKKARLLLKSVRETN-PKHPPGWIASARLEEVAGKLSVARNLIMKGCEEC-PRSEDVWLEAI----RLHPPDVAKTVV 338 (913)
T ss_pred HHHHHHHHHHHHHHhcC-CCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhhC-CchHHHHHHHH----hcCChHHHHHHH
Confidence 46778999999998875 5567778888888888899999998888776653 44555664333 566777788888
Q ss_pred HHHHHCCCCCCHH-HHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Q 002666 286 HEMKAQGVAPDDV-TYTSMIGVLCKSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLFERLKQKGCI 364 (895)
Q Consensus 286 ~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 364 (895)
...++. -|+++ .|..-+. -..+...=.+++++.++.-|. ++..|-..+ ...+.+.|+.++.++.+. ++
T Consensus 339 A~Avr~--~P~Sv~lW~kA~d---LE~~~~~K~RVlRKALe~iP~-sv~LWKaAV----elE~~~darilL~rAvec-cp 407 (913)
T KOG0495|consen 339 ANAVRF--LPTSVRLWLKAAD---LESDTKNKKRVLRKALEHIPR-SVRLWKAAV----ELEEPEDARILLERAVEC-CP 407 (913)
T ss_pred HHHHHh--CCCChhhhhhHHh---hhhHHHHHHHHHHHHHHhCCc-hHHHHHHHH----hccChHHHHHHHHHHHHh-cc
Confidence 888775 34443 3332222 123344445677787776554 666665544 456667799999999986 33
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH----HHCCCCCChhhHH
Q 002666 365 PSVIAYNSLLTCLGKKGRVTEAMKIFEAMKKDARPNNTTYNVLIDMLCKAGNFEDALKFRDAM----KEAGLFPNVMTVN 440 (895)
Q Consensus 365 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~~~~ 440 (895)
.+.. |.-++.+..-++.|..++.+..+..|.+...|.+-...--.+|+.+...+++.+- ...|+..+...|.
T Consensus 408 ~s~d----LwlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl 483 (913)
T KOG0495|consen 408 QSMD----LWLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWL 483 (913)
T ss_pred chHH----HHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHH
Confidence 3333 4445667788999999999999999999999999999999999999988887654 4568888888898
Q ss_pred HHHHHHHhcCChhHHHHHHHHhhhCCCCCC--hhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHh
Q 002666 441 IMVDRLCKAQKLDEAFSIFEGMDHKTCTPD--AVTFCSLIDGLGKNGRVDDAYKFYEKMLDTDQIPNAILYTSLIRNFFK 518 (895)
Q Consensus 441 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 518 (895)
.-...|-..|..-....+....+..|+... ..+|..-.+.|.+.+.++-|..+|..+++-.+ .+...|...+..--.
T Consensus 484 ~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp-~k~slWlra~~~ek~ 562 (913)
T KOG0495|consen 484 KEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFP-CKKSLWLRAAMFEKS 562 (913)
T ss_pred HHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhcc-chhHHHHHHHHHHHh
Confidence 888899999999999999988887776532 46888999999999999999999999998764 366678888877778
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 002666 519 HGRKEDGHKIYKEMVQRGCSPDLMLLNTYMDCVFKAGETEKGRALFEEIKAQGFVPDVQSYSILIHGLVKAGFAHETDQL 598 (895)
Q Consensus 519 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 598 (895)
.|..++-..+++++... ++.....+..+...+...|+...|+.++..+.+.... +...|..-+........++.|..+
T Consensus 563 hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~l 640 (913)
T KOG0495|consen 563 HGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDL 640 (913)
T ss_pred cCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHH
Confidence 89999999999999987 3556667777778888999999999999999887432 566777778888889999999999
Q ss_pred HHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCC-HHhHHHHHHHHHccCCHHHHHHHHHHHHHcCC
Q 002666 599 FYAMKKQGCVLDTRAYNTVVDGFCKSGKVNKAYQLLEEMKTKGHYPT-VVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGI 677 (895)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 677 (895)
|.+.... .|+...|..-+....-.++.++|++++++.++. .|+ ...|..+.+.+.+.++.+.|.+.|..-.+. +
T Consensus 641 lakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-c 715 (913)
T KOG0495|consen 641 LAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-C 715 (913)
T ss_pred HHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-C
Confidence 9998875 678888888888888889999999999999886 344 457888889999999999999999887766 4
Q ss_pred CcCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 002666 678 ELNTVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNAYTWNCLLDALVKAEEISEAFVCFQSMKDLKCTPNHVTYSII 757 (895)
Q Consensus 678 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 757 (895)
+..+..|..+...-.+.|.+..|..++++..-.+. -+...|...+..-.+.|+.+.|..+..++++ .++.+...|.--
T Consensus 716 P~~ipLWllLakleEk~~~~~rAR~ildrarlkNP-k~~~lwle~Ir~ElR~gn~~~a~~lmakALQ-ecp~sg~LWaEa 793 (913)
T KOG0495|consen 716 PNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNP-KNALLWLESIRMELRAGNKEQAELLMAKALQ-ECPSSGLLWAEA 793 (913)
T ss_pred CCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCC-CcchhHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCccchhHHHH
Confidence 66777888898888999999999999999887643 3889999999999999999999999999998 345666778878
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCC
Q 002666 758 INGLCRVRKFNKAFVFWQEMQKQGFKPNTITYTTMISGLAKAGNITEANGLFERFKENGGVP-DSACYNAMMEGLSNANR 836 (895)
Q Consensus 758 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~ 836 (895)
|....+.++-....+.+++ ..-|+.+...+...+....++++|.+.|++.+. ..| ...+|..+...+..+|.
T Consensus 794 I~le~~~~rkTks~DALkk-----ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk--~d~d~GD~wa~fykfel~hG~ 866 (913)
T KOG0495|consen 794 IWLEPRPQRKTKSIDALKK-----CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVK--KDPDNGDAWAWFYKFELRHGT 866 (913)
T ss_pred HHhccCcccchHHHHHHHh-----ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHc--cCCccchHHHHHHHHHHHhCC
Confidence 8877777775555555444 345778888888899999999999999999998 556 46788888888999998
Q ss_pred HHHHHHHHHHHHHC
Q 002666 837 AMDAYTLFEETRRK 850 (895)
Q Consensus 837 ~~~A~~~~~~~~~~ 850 (895)
-++-.+++......
T Consensus 867 eed~kev~~~c~~~ 880 (913)
T KOG0495|consen 867 EEDQKEVLKKCETA 880 (913)
T ss_pred HHHHHHHHHHHhcc
Confidence 88888888876655
No 21
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.90 E-value=3.8e-17 Score=172.54 Aligned_cols=671 Identities=13% Similarity=0.100 Sum_probs=390.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh
Q 002666 160 CIELVVSCVKSKMLREAFDIIQTMRKFKFRPAFTAYTTLIGALATVRESNLMLNLFHQMQELGYEVSVHLFTTLIRVFAR 239 (895)
Q Consensus 160 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 239 (895)
.......+...|+.++|..++..+++.. +....+|.+|...|-+.|+.+++...+-.+-..+ +-|...|..+......
T Consensus 142 ll~eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~ 219 (895)
T KOG2076|consen 142 LLGEANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQ 219 (895)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHh
Confidence 3344444556699999999999998775 5677889999999999999999999887776664 4567899999999999
Q ss_pred cCChhHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCCHhH
Q 002666 240 EGRVDDALFLLDEMKNNAFSVDIVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGVAPDDV----TYTSMIGVLCKSKRLEE 315 (895)
Q Consensus 240 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~----~~~~l~~~~~~~g~~~~ 315 (895)
+|.+++|.-+|.++++.. +++...+-.-+..|-+.|+...|...|.++.....+.|.. .-...++.+...++-+.
T Consensus 220 ~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~ 298 (895)
T KOG2076|consen 220 LGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERER 298 (895)
T ss_pred cccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHH
Confidence 999999999999999986 4455555556778999999999999999999874321222 22334566777788899
Q ss_pred HHHHHHHHhhCC-CCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 002666 316 AVAMFEQMDRNR-EVPCAYAYNTMIMGYGSVGKFDEAFSLFERLKQKGCIPSVIAYNSLLTCLGKKGRVTEAMKIFEAMK 394 (895)
Q Consensus 316 A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 394 (895)
|.+.++...... -..+...++.++..|.+...++.|......+......+|...+.+-= .++ .-...+....
T Consensus 299 a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~-----~~~--~~~~~~~~~~ 371 (895)
T KOG2076|consen 299 AAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDE-----RRR--EEPNALCEVG 371 (895)
T ss_pred HHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhh-----hcc--ccccccccCC
Confidence 999999987622 12356678899999999999999999998887744344433221100 000 0000011111
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCChhhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChh
Q 002666 395 KDARPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEAG--LFPNVMTVNIMVDRLCKAQKLDEAFSIFEGMDHKTCTPDAV 472 (895)
Q Consensus 395 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 472 (895)
+..+.+..+ ..+.-++......+....+...+.+.. +.-+...|.-+..+|...|++.+|+.+|..+......-+..
T Consensus 372 ~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~ 450 (895)
T KOG2076|consen 372 KELSYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAF 450 (895)
T ss_pred CCCCccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchh
Confidence 122222222 111111222222222222222222222 11223344445555555555555555555555443333444
Q ss_pred hHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHH--------cCCCCCHhhH
Q 002666 473 TFCSLIDGLGKNGRVDDAYKFYEKMLDTDQIPNAILYTSLIRNFFKHGRKEDGHKIYKEMVQ--------RGCSPDLMLL 544 (895)
Q Consensus 473 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--------~~~~~~~~~~ 544 (895)
.|..++.+|...|.+++|...|++++...| .+..+-..|...+.+.|+.++|.+.+..+.. .+..|+....
T Consensus 451 vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p-~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~ 529 (895)
T KOG2076|consen 451 VWYKLARCYMELGEYEEAIEFYEKVLILAP-DNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRIL 529 (895)
T ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHH
Confidence 555555555555555555555555555432 2444444555555555555555555554321 1122233333
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHCC----------------------CCCCHHHHHHHHHHHHhcCChHHHHHH----
Q 002666 545 NTYMDCVFKAGETEKGRALFEEIKAQG----------------------FVPDVQSYSILIHGLVKAGFAHETDQL---- 598 (895)
Q Consensus 545 ~~l~~~~~~~~~~~~a~~~~~~~~~~~----------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~---- 598 (895)
....+.+.+.|+.++=......++... ..........++.+-.+.++.....+-
T Consensus 530 ~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~ 609 (895)
T KOG2076|consen 530 AHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDG 609 (895)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccch
Confidence 334444455555444333333332210 111112222233333333332211111
Q ss_pred --HHHHHHcCCCCCH--HhHHHHHHHHHccCChHHHHHHHHHHHHCCCC-CCHH----hHHHHHHHHHccCCHHHHHHHH
Q 002666 599 --FYAMKKQGCVLDT--RAYNTVVDGFCKSGKVNKAYQLLEEMKTKGHY-PTVV----TYGSVIDGLAKIDRLDEAYMLF 669 (895)
Q Consensus 599 --~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~----~~~~l~~~~~~~~~~~~A~~~~ 669 (895)
+......++..+. ..+..++...++.+++++|+.+...+...... -+.. .-...+.+.+..+++..|...+
T Consensus 610 ~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~l 689 (895)
T KOG2076|consen 610 TEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYL 689 (895)
T ss_pred hhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 1111222222222 23456777889999999999999988765321 1221 1223445667889999999999
Q ss_pred HHHHHc-CC---CcCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 002666 670 EEAKSK-GI---ELNTVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNAYTWNCLLDALVKAEEISEAFVCFQSMKDL 745 (895)
Q Consensus 670 ~~~~~~-~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 745 (895)
+.+... +. +.-...|+.......+.++-.--.+.+..+.......++......+..+..++.+..|+..+-++...
T Consensus 690 R~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~ 769 (895)
T KOG2076|consen 690 RSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQ 769 (895)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHh
Confidence 998865 11 12234556444555555543333344444433221112333333344556788999999988888773
Q ss_pred CCCCCHHHHH-HHHHHHHh----------cCCHhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002666 746 KCTPNHVTYS-IIINGLCR----------VRKFNKAFVFWQEMQKQG-FKPNTITYTTMISGLAKAGNITEANGLFERFK 813 (895)
Q Consensus 746 ~~~p~~~~~~-~l~~~~~~----------~g~~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 813 (895)
.|+....+ +++-++.. .-..-.++.++++..+.. ......++..++++|-..|-+.-|+.+|++++
T Consensus 770 --~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL 847 (895)
T KOG2076|consen 770 --NPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVL 847 (895)
T ss_pred --CCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHh
Confidence 46644444 23322221 112345667776666541 11246788899999999999999999999999
Q ss_pred HCCCCC---------C----HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 002666 814 ENGGVP---------D----SACYNAMMEGLSNANRAMDAYTLFEE 846 (895)
Q Consensus 814 ~~~~~p---------~----~~~~~~l~~~~~~~g~~~~A~~~~~~ 846 (895)
+. .| + ..+-..|.-.|..+|+...|..++++
T Consensus 848 ~~--~p~~~~~~~~d~~dLrkeAA~NL~LIY~~SGn~~lArqil~k 891 (895)
T KOG2076|consen 848 EV--SPKDVTDPKEDNYDLRKEAAYNLHLIYKKSGNMQLARQILEK 891 (895)
T ss_pred CC--CccccccccCCcccHHHHHHhhhhhhhccCCcHHHHHHHHHh
Confidence 84 22 1 13344566679999999999988875
No 22
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.89 E-value=1.7e-16 Score=160.78 Aligned_cols=611 Identities=11% Similarity=0.025 Sum_probs=477.3
Q ss_pred cCChhHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHH
Q 002666 240 EGRVDDALFLLDEMKNNAFSVDIVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGVAPDDVTYTSMIGVLCKSKRLEEAVAM 319 (895)
Q Consensus 240 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~ 319 (895)
.++...|+.++..+.+.+ +.+...|-+-.+.--..|++..|..+..+=-+. ++-+...|.-- ++....+.|..+
T Consensus 264 l~DikKaR~llKSvretn-P~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~-cprSeDvWLea----iRLhp~d~aK~v 337 (913)
T KOG0495|consen 264 LEDIKKARLLLKSVRETN-PKHPPGWIASARLEEVAGKLSVARNLIMKGCEE-CPRSEDVWLEA----IRLHPPDVAKTV 337 (913)
T ss_pred HHHHHHHHHHHHHHHhcC-CCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhh-CCchHHHHHHH----HhcCChHHHHHH
Confidence 457788999999998887 445666766667777788888888877554443 23344555432 456677778888
Q ss_pred HHHHhhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC
Q 002666 320 FEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLFERLKQKGCIPSVIAYNSLLTCLGKKGRVTEAMKIFEAMKKDARP 399 (895)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 399 (895)
.-......|. ++..|..-+. -..+...=.+++.+..+.- |+.+ .|-.+.....+.+.|+.++.+..+-.|.
T Consensus 338 vA~Avr~~P~-Sv~lW~kA~d---LE~~~~~K~RVlRKALe~i--P~sv---~LWKaAVelE~~~darilL~rAveccp~ 408 (913)
T KOG0495|consen 338 VANAVRFLPT-SVRLWLKAAD---LESDTKNKKRVLRKALEHI--PRSV---RLWKAAVELEEPEDARILLERAVECCPQ 408 (913)
T ss_pred HHHHHHhCCC-ChhhhhhHHh---hhhHHHHHHHHHHHHHHhC--CchH---HHHHHHHhccChHHHHHHHHHHHHhccc
Confidence 8888776554 4444433222 2234445566777777752 4433 2334455667777899999999998888
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHh----hhCCCCCChhhHH
Q 002666 400 NNTTYNVLIDMLCKAGNFEDALKFRDAMKEAGLFPNVMTVNIMVDRLCKAQKLDEAFSIFEGM----DHKTCTPDAVTFC 475 (895)
Q Consensus 400 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~~~~ 475 (895)
+...|..+. +..-++.|..++.+..+. ++.+...|.+-...-...|+.+....++.+- ...|+..+...|.
T Consensus 409 s~dLwlAla----rLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl 483 (913)
T KOG0495|consen 409 SMDLWLALA----RLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWL 483 (913)
T ss_pred hHHHHHHHH----HHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHH
Confidence 888777655 456688999999998875 5667888887777777889988888887654 4557788888898
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHhCCCCc--chhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHH
Q 002666 476 SLIDGLGKNGRVDDAYKFYEKMLDTDQIP--NAILYTSLIRNFFKHGRKEDGHKIYKEMVQRGCSPDLMLLNTYMDCVFK 553 (895)
Q Consensus 476 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 553 (895)
.-+..+...|..--+..+....+..|... ...+|..-...|.+.+.++-|..+|...++- ++.+...|......--.
T Consensus 484 ~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~ 562 (913)
T KOG0495|consen 484 KEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKS 562 (913)
T ss_pred HHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHh
Confidence 88889999999998889999888877642 3457888899999999999999999999885 45567778887777778
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHH
Q 002666 554 AGETEKGRALFEEIKAQGFVPDVQSYSILIHGLVKAGFAHETDQLFYAMKKQGCVLDTRAYNTVVDGFCKSGKVNKAYQL 633 (895)
Q Consensus 554 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 633 (895)
.|..++-..+++++...- +.....|......+-..|+...|..++..+.+.. +.+...|...+.....+..++.|..+
T Consensus 563 hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~l 640 (913)
T KOG0495|consen 563 HGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDL 640 (913)
T ss_pred cCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHH
Confidence 899999999999998873 3345566666777888899999999999998875 44788999999999999999999999
Q ss_pred HHHHHHCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCC
Q 002666 634 LEEMKTKGHYPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNTVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLT 713 (895)
Q Consensus 634 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 713 (895)
|.+.... .|+...|.--+....-.++.++|+.+++++++. ++.-...|..+...+.+.++++.|.+.|..-.+. .+
T Consensus 641 lakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP 716 (913)
T KOG0495|consen 641 LAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CP 716 (913)
T ss_pred HHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CC
Confidence 9998875 577777777777777889999999999999986 4555678999999999999999999999887764 33
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 002666 714 PNAYTWNCLLDALVKAEEISEAFVCFQSMKDLKCTPNHVTYSIIINGLCRVRKFNKAFVFWQEMQKQGFKPNTITYTTMI 793 (895)
Q Consensus 714 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 793 (895)
-.+..|..|...-.+.|.+-+|..++++..-.+ +.+...|...|..-.+.|+.+.|..++.++++. ++.+...|..-|
T Consensus 717 ~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI 794 (913)
T KOG0495|consen 717 NSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAI 794 (913)
T ss_pred CCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHH
Confidence 478889999998899999999999999998754 556678889999999999999999999999886 566677888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHH
Q 002666 794 SGLAKAGNITEANGLFERFKENGGVPDSACYNAMMEGLSNANRAMDAYTLFEETRRKGFNIHTKTCVILLDALHKAECLE 873 (895)
Q Consensus 794 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 873 (895)
...-+.++--+.+..+++ ..-|+......+..+....++++|+++|++..+.+ |....+|..+...+...|.-+
T Consensus 795 ~le~~~~rkTks~DALkk-----ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d-~d~GD~wa~fykfel~hG~ee 868 (913)
T KOG0495|consen 795 WLEPRPQRKTKSIDALKK-----CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD-PDNGDAWAWFYKFELRHGTEE 868 (913)
T ss_pred HhccCcccchHHHHHHHh-----ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC-CccchHHHHHHHHHHHhCCHH
Confidence 877777665555444433 34478888999999999999999999999999985 777888888888999999888
Q ss_pred HHHHHHHHHHHH
Q 002666 874 QAAIVGAVLRET 885 (895)
Q Consensus 874 ~A~~~~~~l~~~ 885 (895)
+-..|.++-...
T Consensus 869 d~kev~~~c~~~ 880 (913)
T KOG0495|consen 869 DQKEVLKKCETA 880 (913)
T ss_pred HHHHHHHHHhcc
Confidence 888766665443
No 23
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.89 E-value=2.2e-20 Score=200.81 Aligned_cols=302 Identities=15% Similarity=0.139 Sum_probs=187.6
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhc
Q 002666 234 IRVFAREGRVDDALFLLDEMKNNAFSVDIVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGVAPD---DVTYTSMIGVLCKS 310 (895)
Q Consensus 234 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~---~~~~~~l~~~~~~~ 310 (895)
+..+...|++++|...|.++.+.+ +.+..++..++..+...|++++|..+++.+...+..++ ...+..++..|.+.
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 334456666666666666666653 33445666666666667777777777666665422111 13456666677777
Q ss_pred CCHhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcCCHHHH
Q 002666 311 KRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLFERLKQKGCIPS----VIAYNSLLTCLGKKGRVTEA 386 (895)
Q Consensus 311 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A 386 (895)
|++++|..+|+++.+..+. +..++..++..+.+.|++++|.+.++.+.+.+..+. ...+..++..+.+.|++++|
T Consensus 121 g~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 199 (389)
T PRK11788 121 GLLDRAEELFLQLVDEGDF-AEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAA 199 (389)
T ss_pred CCHHHHHHHHHHHHcCCcc-hHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence 7777777777777665432 556666777777777777777777777766543322 12344566666677777777
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhhhCC
Q 002666 387 MKIFEAMKKDARPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEAGLFPNVMTVNIMVDRLCKAQKLDEAFSIFEGMDHKT 466 (895)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 466 (895)
.+.|+++.+..|.+..++..++..+.+.|++++|.++++++.+.+......++..++.+|+..|++++|...++++.+.
T Consensus 200 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~- 278 (389)
T PRK11788 200 RALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE- 278 (389)
T ss_pred HHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence 7777777666666666777777777777777777777777765432112344566666777777777777777766655
Q ss_pred CCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCH
Q 002666 467 CTPDAVTFCSLIDGLGKNGRVDDAYKFYEKMLDTDQIPNAILYTSLIRNFFK---HGRKEDGHKIYKEMVQRGCSPDL 541 (895)
Q Consensus 467 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~~~~~~ 541 (895)
.|+...+..++..+.+.|++++|..+++++++.. |+...+..++..+.. .|+.+++..+++++++.++.|++
T Consensus 279 -~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~--P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p 353 (389)
T PRK11788 279 -YPGADLLLALAQLLEEQEGPEAAQALLREQLRRH--PSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKP 353 (389)
T ss_pred -CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--cCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCC
Confidence 2344445666667777777777777777766653 455555555555443 34666677767666665555444
No 24
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.89 E-value=4.1e-20 Score=198.69 Aligned_cols=300 Identities=11% Similarity=0.095 Sum_probs=158.8
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcC---HHHHHHHHHHHHhcCC
Q 002666 166 SCVKSKMLREAFDIIQTMRKFKFRPAFTAYTTLIGALATVRESNLMLNLFHQMQELGYEVS---VHLFTTLIRVFAREGR 242 (895)
Q Consensus 166 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~ 242 (895)
.+...|++++|...|+++.+.. +.+..++..++..+...|++++|..+++.+...+..++ ...+..++..|.+.|+
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 3444555555555555555442 22334455555555555555555555555554321111 1344555556666666
Q ss_pred hhHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHhHHHH
Q 002666 243 VDDALFLLDEMKNNAFSVDIVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGVAPDD----VTYTSMIGVLCKSKRLEEAVA 318 (895)
Q Consensus 243 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~----~~~~~l~~~~~~~g~~~~A~~ 318 (895)
+++|..+|+++.+.. +.+..+++.++.++.+.|++++|.+.++.+.+.+..+.. ..+..++..+.+.|++++|..
T Consensus 123 ~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 201 (389)
T PRK11788 123 LDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARA 201 (389)
T ss_pred HHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 666666666665542 334455556666666666666666666666554322211 123445555556666666666
Q ss_pred HHHHHhhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCC
Q 002666 319 MFEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLFERLKQKGCIPSVIAYNSLLTCLGKKGRVTEAMKIFEAMKKDAR 398 (895)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 398 (895)
.|+++.+..+. +..++..++..|.+.|++++|.++++++.+.+......++..++.+|...|++++|.+.++++.+..|
T Consensus 202 ~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p 280 (389)
T PRK11788 202 LLKKALAADPQ-CVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYP 280 (389)
T ss_pred HHHHHHhHCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 66666554432 44455556666666666666666666665543222233455555666666666666666665554433
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh---cCChhHHHHHHHHhhhCCCCCCh
Q 002666 399 PNNTTYNVLIDMLCKAGNFEDALKFRDAMKEAGLFPNVMTVNIMVDRLCK---AQKLDEAFSIFEGMDHKTCTPDA 471 (895)
Q Consensus 399 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~ 471 (895)
.. ..+..++..+.+.|++++|..+++++.+. .|+..++..++..++. .|+.+++..+++++.+.++.|++
T Consensus 281 ~~-~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p 353 (389)
T PRK11788 281 GA-DLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKP 353 (389)
T ss_pred Cc-hHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCC
Confidence 22 33355566666666666666666655553 3555555555554443 33555666666655554444333
No 25
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.88 E-value=1.4e-18 Score=194.97 Aligned_cols=331 Identities=11% Similarity=0.034 Sum_probs=235.3
Q ss_pred HHHHHHhhcCChHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 002666 91 LVIGVLRRLKDVNLAINYFRWVERKTDQAHSLEAYNSLLMVMAVSKNFEPLEEILGEMSLAGIGPTNNTCIELVVSCVKS 170 (895)
Q Consensus 91 ~~~~~l~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~~~~~~ 170 (895)
.++.-+.+.|++..|+..++-+... .|..+++...++.++...|++++|...++++.... |.+..++..+...+.+.
T Consensus 47 ~~~~~~~~~g~~~~A~~l~~~~l~~--~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~ 123 (656)
T PRK15174 47 LFAIACLRKDETDVGLTLLSDRVLT--AKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKS 123 (656)
T ss_pred HHHHHHHhcCCcchhHHHhHHHHHh--CCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHc
Confidence 3444455568888888887777644 35667777777777778888888888888877652 45566777777788888
Q ss_pred CChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHH
Q 002666 171 KMLREAFDIIQTMRKFKFRPAFTAYTTLIGALATVRESNLMLNLFHQMQELGYEVSVHLFTTLIRVFAREGRVDDALFLL 250 (895)
Q Consensus 171 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 250 (895)
|++++|...+++..... +.+...+..++..+...|++++|...++++.... +.+...+..+ ..+...|++++|...+
T Consensus 124 g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~-P~~~~a~~~~-~~l~~~g~~~eA~~~~ 200 (656)
T PRK15174 124 KQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEV-PPRGDMIATC-LSFLNKSRLPEDHDLA 200 (656)
T ss_pred CCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-CCCHHHHHHH-HHHHHcCCHHHHHHHH
Confidence 88888888888777653 3445667777778888888888888887776653 2233333333 3366778888888888
Q ss_pred HHHHhCCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhH----HHHHHHHHhhC
Q 002666 251 DEMKNNAFSVDIVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGVAPDDVTYTSMIGVLCKSKRLEE----AVAMFEQMDRN 326 (895)
Q Consensus 251 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~----A~~~~~~~~~~ 326 (895)
+.+.+....++...+..++..+.+.|++++|...++++.+... .+...+..+...+...|++++ |+..|++++..
T Consensus 201 ~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p-~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l 279 (656)
T PRK15174 201 RALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGL-DGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF 279 (656)
T ss_pred HHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh
Confidence 8777654333444445556677778888888888888777642 255667777777888888775 67888887777
Q ss_pred CCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHH
Q 002666 327 REVPCAYAYNTMIMGYGSVGKFDEAFSLFERLKQKGCIPSVIAYNSLLTCLGKKGRVTEAMKIFEAMKKDARPNNTTYNV 406 (895)
Q Consensus 327 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 406 (895)
.+. +..++..++..+...|++++|...++++.+..+. +...+..+..++.+.|++++|+..|+.+....|.+...+..
T Consensus 280 ~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~ 357 (656)
T PRK15174 280 NSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRY 357 (656)
T ss_pred CCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHH
Confidence 665 6777777888888888888888888887776432 45566777777778888888888888777666666555555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC
Q 002666 407 LIDMLCKAGNFEDALKFRDAMKEA 430 (895)
Q Consensus 407 l~~~~~~~g~~~~A~~~~~~~~~~ 430 (895)
++.++...|+.++|...|++..+.
T Consensus 358 ~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 358 AAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh
Confidence 667777788888888888777764
No 26
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.88 E-value=1.6e-18 Score=194.60 Aligned_cols=354 Identities=11% Similarity=0.045 Sum_probs=276.9
Q ss_pred HHHHHHHHHccCCcchHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHh
Q 002666 125 YNSLLMVMAVSKNFEPLEEILGEMSLAGIGPTNNTCIELVVSCVKSKMLREAFDIIQTMRKFKFRPAFTAYTTLIGALAT 204 (895)
Q Consensus 125 ~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 204 (895)
...++..+.+.|++++|..+++...... +.+..+...++.++...|++++|...|+++.... +.+..++..+...+..
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~ 122 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLK 122 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHH
Confidence 4556677788999999999999988764 4456667777777888999999999999988774 4456778888899999
Q ss_pred cCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhhHHHH
Q 002666 205 VRESNLMLNLFHQMQELGYEVSVHLFTTLIRVFAREGRVDDALFLLDEMKNNAFSVDIVLYNVCIDCFGKVGKVDMAWKF 284 (895)
Q Consensus 205 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 284 (895)
.|++++|...++++.+.. +.+...+..++.++...|++++|...++.+....+ .+...+..+ ..+...|++++|...
T Consensus 123 ~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P-~~~~a~~~~-~~l~~~g~~~eA~~~ 199 (656)
T PRK15174 123 SKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVP-PRGDMIATC-LSFLNKSRLPEDHDL 199 (656)
T ss_pred cCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCC-CCHHHHHHH-HHHHHcCCHHHHHHH
Confidence 999999999999998863 45677888889999999999999999998876642 233344333 347788999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCCHHH----HHHHHHHHHh
Q 002666 285 FHEMKAQGVAPDDVTYTSMIGVLCKSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFDE----AFSLFERLKQ 360 (895)
Q Consensus 285 ~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----A~~~~~~~~~ 360 (895)
++.+.+....++...+..++..+...|++++|+..++++....+. +...+..++..|...|++++ |...|+++.+
T Consensus 200 ~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~ 278 (656)
T PRK15174 200 ARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ 278 (656)
T ss_pred HHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh
Confidence 999877643344555566677888999999999999999887765 77888889999999999885 7899999888
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChh-hH
Q 002666 361 KGCIPSVIAYNSLLTCLGKKGRVTEAMKIFEAMKKDARPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEAGLFPNVM-TV 439 (895)
Q Consensus 361 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~ 439 (895)
..+ .+..++..++..+.+.|++++|+..+++.....|.+..++..++.++.+.|++++|...++++...+ |+.. .+
T Consensus 279 l~P-~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~--P~~~~~~ 355 (656)
T PRK15174 279 FNS-DNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREK--GVTSKWN 355 (656)
T ss_pred hCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--ccchHHH
Confidence 753 3677888899999999999999999999988888888889999999999999999999999888753 4433 33
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhC
Q 002666 440 NIMVDRLCKAQKLDEAFSIFEGMDHKTCTPDAVTFCSLIDGLGKNGRVDDAYKFYEKMLDT 500 (895)
Q Consensus 440 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 500 (895)
..+...+...|+.++|...|++..+... +.. ...+++|...|.+.++.
T Consensus 356 ~~~a~al~~~G~~deA~~~l~~al~~~P--~~~-----------~~~~~ea~~~~~~~~~~ 403 (656)
T PRK15174 356 RYAAAALLQAGKTSEAESVFEHYIQARA--SHL-----------PQSFEEGLLALDGQISA 403 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCh--hhc-----------hhhHHHHHHHHHHHHHh
Confidence 4456678889999999999988877632 211 23445566666665554
No 27
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.87 E-value=6.5e-18 Score=194.17 Aligned_cols=406 Identities=8% Similarity=0.052 Sum_probs=186.2
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHH
Q 002666 226 SVHLFTTLIRVFAREGRVDDALFLLDEMKNNAFSVDIVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGVAPDDVTYTSMIG 305 (895)
Q Consensus 226 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~ 305 (895)
++.-....+.+....|+.++|++++.+..... +.+...+..++..+...|++++|.++|++.++.. +.+...+..++.
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~ 91 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLIL 91 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 33444444444445555555555555544321 2233334444555555555555555555544431 112333444444
Q ss_pred HHHhcCCHhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 002666 306 VLCKSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLFERLKQKGCIPSVIAYNSLLTCLGKKGRVTE 385 (895)
Q Consensus 306 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 385 (895)
.+...|++++|+..+++++...+. +.. +..++..+...|+.++|...++++.+..+. +...+..++.++...|..+.
T Consensus 92 ~l~~~g~~~eA~~~l~~~l~~~P~-~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~ 168 (765)
T PRK10049 92 TLADAGQYDEALVKAKQLVSGAPD-KAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAP 168 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCC-CHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHH
Confidence 455555555555555555544333 333 444555555555555555555555554321 33334444444445555555
Q ss_pred HHHHHHHHhcCCCCC-----HHHHHHHHHHHH-----hcCCH---HHHHHHHHHHHHC-CCCCChh-hHH----HHHHHH
Q 002666 386 AMKIFEAMKKDARPN-----NTTYNVLIDMLC-----KAGNF---EDALKFRDAMKEA-GLFPNVM-TVN----IMVDRL 446 (895)
Q Consensus 386 A~~~~~~~~~~~~~~-----~~~~~~l~~~~~-----~~g~~---~~A~~~~~~~~~~-~~~~~~~-~~~----~l~~~~ 446 (895)
|++.++.+.. .|.. ......++.... ..+++ ++|++.++.+.+. ...|+.. .+. ..+..+
T Consensus 169 Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~L 247 (765)
T PRK10049 169 ALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGAL 247 (765)
T ss_pred HHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHH
Confidence 5555544433 1110 001111111111 11223 5566666666542 1112211 110 112234
Q ss_pred HhcCChhHHHHHHHHhhhCCCC-CChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCc---chhhHHHHHHHHHhcCCH
Q 002666 447 CKAQKLDEAFSIFEGMDHKTCT-PDAVTFCSLIDGLGKNGRVDDAYKFYEKMLDTDQIP---NAILYTSLIRNFFKHGRK 522 (895)
Q Consensus 447 ~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~ 522 (895)
...|++++|+..|+.+...+.+ |+ .....++..|...|++++|+..|++++...+.. .......+..++...|++
T Consensus 248 l~~g~~~eA~~~~~~ll~~~~~~P~-~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~ 326 (765)
T PRK10049 248 LARDRYKDVISEYQRLKAEGQIIPP-WAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENY 326 (765)
T ss_pred HHhhhHHHHHHHHHHhhccCCCCCH-HHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccH
Confidence 4556677777777776665422 21 122224556667777777777777766543221 123344555566667777
Q ss_pred HHHHHHHHHHHHcCC-----------CCC---HhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 002666 523 EDGHKIYKEMVQRGC-----------SPD---LMLLNTYMDCVFKAGETEKGRALFEEIKAQGFVPDVQSYSILIHGLVK 588 (895)
Q Consensus 523 ~~A~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 588 (895)
++|...++.+..... .|+ ...+..+...+...|+.++|+..++++.... +.+...+..++..+..
T Consensus 327 ~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~ 405 (765)
T PRK10049 327 PGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQA 405 (765)
T ss_pred HHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 777777776665421 011 1122233334444455555555555544432 2234444444445555
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHC
Q 002666 589 AGFAHETDQLFYAMKKQGCVLDTRAYNTVVDGFCKSGKVNKAYQLLEEMKTK 640 (895)
Q Consensus 589 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 640 (895)
.|++++|...++++.... +.+...+...+..+...|++++|..+++++++.
T Consensus 406 ~g~~~~A~~~l~~al~l~-Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 406 RGWPRAAENELKKAEVLE-PRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred cCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 555555555555554432 222333444444444555555555555555543
No 28
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.87 E-value=1.1e-17 Score=192.18 Aligned_cols=406 Identities=14% Similarity=0.095 Sum_probs=202.2
Q ss_pred CCCHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHH
Q 002666 119 AHSLEAYNSLLMVMAVSKNFEPLEEILGEMSLAGIGPTNNTCIELVVSCVKSKMLREAFDIIQTMRKFKFRPAFTAYTTL 198 (895)
Q Consensus 119 ~~~~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 198 (895)
+.++..-.-.+.+....|++++|++++.++... -+.+...+..+...+.+.|++++|..++++..+.. +.+...+..+
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~-~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 89 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVH-MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGL 89 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 334444444444555555555555555554431 12333344555555555555555555555544432 2233444455
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCh
Q 002666 199 IGALATVRESNLMLNLFHQMQELGYEVSVHLFTTLIRVFAREGRVDDALFLLDEMKNNAFSVDIVLYNVCIDCFGKVGKV 278 (895)
Q Consensus 199 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 278 (895)
+.++...|++++|+..++++.+.. +.+.. +..++.++...|++++|+..++++.+.. +.+...+..++.++...|..
T Consensus 90 a~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~ 166 (765)
T PRK10049 90 ILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLS 166 (765)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCh
Confidence 555555555555555555555542 33334 5555555555555555555555555543 22333344445555555555
Q ss_pred hhHHHHHHHHHHCCCCCCH------HHHHHHHHHHH-----hcCCH---hHHHHHHHHHhhCC-CCCCHH-hH----HHH
Q 002666 279 DMAWKFFHEMKAQGVAPDD------VTYTSMIGVLC-----KSKRL---EEAVAMFEQMDRNR-EVPCAY-AY----NTM 338 (895)
Q Consensus 279 ~~A~~~~~~~~~~g~~p~~------~~~~~l~~~~~-----~~g~~---~~A~~~~~~~~~~~-~~~~~~-~~----~~l 338 (895)
++|++.++.... .|+. .....++.... ..+++ ++|++.++.+++.. ..|+.. .+ ...
T Consensus 167 e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~ 243 (765)
T PRK10049 167 APALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDR 243 (765)
T ss_pred HHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHH
Confidence 555555544332 1111 01111111111 11223 55666666665431 111111 11 111
Q ss_pred HHHHHccCCHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHh
Q 002666 339 IMGYGSVGKFDEAFSLFERLKQKGCI-PSVIAYNSLLTCLGKKGRVTEAMKIFEAMKKDARPN----NTTYNVLIDMLCK 413 (895)
Q Consensus 339 ~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~ 413 (895)
+..+...|++++|+..|+++.+.+.+ |+. ....+...|...|++++|+..|+++....|.+ ......+..++..
T Consensus 244 l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~ 322 (765)
T PRK10049 244 LGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLE 322 (765)
T ss_pred HHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHh
Confidence 22334556666666666666665421 221 22224556666666666666666665443322 2344455555666
Q ss_pred cCCHHHHHHHHHHHHHCCC-----------CCCh---hhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHH
Q 002666 414 AGNFEDALKFRDAMKEAGL-----------FPNV---MTVNIMVDRLCKAQKLDEAFSIFEGMDHKTCTPDAVTFCSLID 479 (895)
Q Consensus 414 ~g~~~~A~~~~~~~~~~~~-----------~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 479 (895)
.|++++|..+++++..... .|+. ..+..+...+...|++++|++.++++.... +.+...+..++.
T Consensus 323 ~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~ 401 (765)
T PRK10049 323 SENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYAS 401 (765)
T ss_pred cccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 6666666666666655320 1121 123344555566666666666666665542 334556666666
Q ss_pred HHhhcCCHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 002666 480 GLGKNGRVDDAYKFYEKMLDTDQIPNAILYTSLIRNFFKHGRKEDGHKIYKEMVQR 535 (895)
Q Consensus 480 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 535 (895)
.+...|++++|++.+++++...| .+...+...+..+...|++++|..+++++++.
T Consensus 402 l~~~~g~~~~A~~~l~~al~l~P-d~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 402 VLQARGWPRAAENELKKAEVLEP-RNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHhcCCHHHHHHHHHHHHhhCC-CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 66666666666666666666543 24455555666666666666666666666664
No 29
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.86 E-value=3.4e-16 Score=175.51 Aligned_cols=466 Identities=11% Similarity=0.066 Sum_probs=299.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 002666 367 VIAYNSLLTCLGKKGRVTEAMKIFEAMKKDARPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEAGLFPNVMTVNIMVDRL 446 (895)
Q Consensus 367 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 446 (895)
+.+...-+-...+.|+++.|+..|+++.+..|.+......++..+...|+.++|+..+++..... .........+...+
T Consensus 34 ~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly 112 (822)
T PRK14574 34 ADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAY 112 (822)
T ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHH
Confidence 33444445556788888888888888888777775443388888888888888888888887311 11222223335577
Q ss_pred HhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHhcCCHHHHH
Q 002666 447 CKAQKLDEAFSIFEGMDHKTCTPDAVTFCSLIDGLGKNGRVDDAYKFYEKMLDTDQIPNAILYTSLIRNFFKHGRKEDGH 526 (895)
Q Consensus 447 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 526 (895)
...|++++|+++++++.+.... ++..+..++..+...++.++|+..++++....+ +...+..++..+...++..+|+
T Consensus 113 ~~~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp--~~~~~l~layL~~~~~~~~~AL 189 (822)
T PRK14574 113 RNEKRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAERDP--TVQNYMTLSYLNRATDRNYDAL 189 (822)
T ss_pred HHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCc--chHHHHHHHHHHHhcchHHHHH
Confidence 7788888888888888887533 566677777888888888888888888887653 3444444444454566666688
Q ss_pred HHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 002666 527 KIYKEMVQRGCSPDLMLLNTYMDCVFKAGETEKGRALFEEIKAQGFVPDVQSYSILIHGLVKAGFAHETDQLFYAMKKQG 606 (895)
Q Consensus 527 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 606 (895)
+.++++.+.. +.+...+..+...+.+.|-...|.++..+-. +..+-...... +.+.|.+..+- +
T Consensus 190 ~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p------~~f~~~~~~~l-----~~~~~a~~vr~----a 253 (822)
T PRK14574 190 QASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENP------NLVSAEHYRQL-----ERDAAAEQVRM----A 253 (822)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCc------cccCHHHHHHH-----HHHHHHHHHhh----c
Confidence 8888888863 4456677777778888888888877666532 22111111000 01111111111 1
Q ss_pred CCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHC-CCCCCH-H----hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcC
Q 002666 607 CVLDTRAYNTVVDGFCKSGKVNKAYQLLEEMKTK-GHYPTV-V----TYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELN 680 (895)
Q Consensus 607 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~-~----~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 680 (895)
..++..- -. +---.+.|+.-++.+... +..|.. . +..-.+-++...+++.+++..|+.+...+.+..
T Consensus 254 ~~~~~~~----~~---r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P 326 (822)
T PRK14574 254 VLPTRSE----TE---RFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMP 326 (822)
T ss_pred ccccccc----hh---hHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCC
Confidence 0010000 00 000234555556665542 111221 1 112234466777888888888888887765544
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC-----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--------
Q 002666 681 TVIYSSLIDGFGKVGRIDEAYLIMEELMQKGL-----TPNAYTWNCLLDALVKAEEISEAFVCFQSMKDLKC-------- 747 (895)
Q Consensus 681 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-------- 747 (895)
..+-..++++|...+++++|..+|..+..... +++......|..+|..++++++|..+++++.+...
T Consensus 327 ~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~ 406 (822)
T PRK14574 327 DYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGL 406 (822)
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCC
Confidence 55667788888888888888888888866321 12333356788888888888888888888876211
Q ss_pred ---CCCH---HHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-C
Q 002666 748 ---TPNH---VTYSIIINGLCRVRKFNKAFVFWQEMQKQGFKPNTITYTTMISGLAKAGNITEANGLFERFKENGGVP-D 820 (895)
Q Consensus 748 ---~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~ 820 (895)
.|+. ..+..++..+...|++.+|.+.++++... -+-|......+...+...|.+.+|.+.++.+.. ..| +
T Consensus 407 ~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~-aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~--l~P~~ 483 (822)
T PRK14574 407 PGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSST-APANQNLRIALASIYLARDLPRKAEQELKAVES--LAPRS 483 (822)
T ss_pred CCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--hCCcc
Confidence 1221 22335666777888888888888888764 345677788888888888888888888876665 566 5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 002666 821 SACYNAMMEGLSNANRAMDAYTLFEETRRKGFNIHTKTCVILLD 864 (895)
Q Consensus 821 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 864 (895)
..+...++.++...|++++|..+.+.+.+. .|.+. ....|..
T Consensus 484 ~~~~~~~~~~al~l~e~~~A~~~~~~l~~~-~Pe~~-~~~~l~r 525 (822)
T PRK14574 484 LILERAQAETAMALQEWHQMELLTDDVISR-SPEDI-PSQELDR 525 (822)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhh-CCCch-hHHHHHH
Confidence 677778888888888888888888888776 24443 3334433
No 30
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.86 E-value=3.7e-16 Score=175.23 Aligned_cols=453 Identities=13% Similarity=0.088 Sum_probs=288.7
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 002666 228 HLFTTLIRVFAREGRVDDALFLLDEMKNNAFSVDIVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGVAPDDVTYTSMIGVL 307 (895)
Q Consensus 228 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~ 307 (895)
.+-..-+-...+.|+++.|+..|++..+..+.....++ .++..+...|+.++|+.++++..... .........++..+
T Consensus 35 ~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly 112 (822)
T PRK14574 35 DTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAY 112 (822)
T ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHH
Confidence 34444445567899999999999999887422112344 77788888899999999999988321 12233444446678
Q ss_pred HhcCCHhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 002666 308 CKSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLFERLKQKGCIPSVIAYNSLLTCLGKKGRVTEAM 387 (895)
Q Consensus 308 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 387 (895)
...|++++|+++|+++++..+. +...+..++..|...++.++|++.++++.... |+...+..++..+...++..+|+
T Consensus 113 ~~~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d--p~~~~~l~layL~~~~~~~~~AL 189 (822)
T PRK14574 113 RNEKRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAERD--PTVQNYMTLSYLNRATDRNYDAL 189 (822)
T ss_pred HHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC--cchHHHHHHHHHHHhcchHHHHH
Confidence 8889999999999999998877 67788888889999999999999999998874 55555655555555566776799
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhhhCCC
Q 002666 388 KIFEAMKKDARPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEAGLFPNVMTVNIMVDRLCKAQKLDEAFSIFEGMDHKTC 467 (895)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 467 (895)
+.++++....|.+...+..+..++.+.|-...|.++..+- |+..+-...... +.+.|.+..+...
T Consensus 190 ~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~------p~~f~~~~~~~l-----~~~~~a~~vr~a~---- 254 (822)
T PRK14574 190 QASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKEN------PNLVSAEHYRQL-----ERDAAAEQVRMAV---- 254 (822)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhC------ccccCHHHHHHH-----HHHHHHHHHhhcc----
Confidence 9999999999999999999999999999999988776653 332221111110 1122222221111
Q ss_pred CCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCC-cc-----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 002666 468 TPDAVTFCSLIDGLGKNGRVDDAYKFYEKMLDTDQI-PN-----AILYTSLIRNFFKHGRKEDGHKIYKEMVQRGCSPDL 541 (895)
Q Consensus 468 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 541 (895)
.++..- -. +.--.+.|+.-++.++..-.. |. ..+..-.+.++...+++.++++.|+.+...+.+-..
T Consensus 255 ~~~~~~----~~---r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~ 327 (822)
T PRK14574 255 LPTRSE----TE---RFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPD 327 (822)
T ss_pred cccccc----hh---hHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCH
Confidence 111000 00 011235555666665552111 21 112234455677778888888888888776655455
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC---------
Q 002666 542 MLLNTYMDCVFKAGETEKGRALFEEIKAQG-----FVPDVQSYSILIHGLVKAGFAHETDQLFYAMKKQGC--------- 607 (895)
Q Consensus 542 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--------- 607 (895)
.+...+.++|...+.+++|..+++.+.... ..++......|.-+|...+++++|..+++.+.+...
T Consensus 328 y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~ 407 (822)
T PRK14574 328 YARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLP 407 (822)
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCC
Confidence 567777778888888888888888775542 122333345667777777777777777777766311
Q ss_pred --CC--C-HHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHH
Q 002666 608 --VL--D-TRAYNTVVDGFCKSGKVNKAYQLLEEMKTKGHYPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNTV 682 (895)
Q Consensus 608 --~~--~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 682 (895)
.| | ...+..++..+.-.|+..+|.+.++++....+. |......+.+.+...|.+.+|.+.++.+.... +-+..
T Consensus 408 ~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~-n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~-P~~~~ 485 (822)
T PRK14574 408 GKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPA-NQNLRIALASIYLARDLPRKAEQELKAVESLA-PRSLI 485 (822)
T ss_pred CCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC-CccHH
Confidence 01 1 122233445555666666666666666655332 55566666666666666666666665555442 33445
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHH
Q 002666 683 IYSSLIDGFGKVGRIDEAYLIMEELMQ 709 (895)
Q Consensus 683 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 709 (895)
+....+..+...+++.+|..+.+.+.+
T Consensus 486 ~~~~~~~~al~l~e~~~A~~~~~~l~~ 512 (822)
T PRK14574 486 LERAQAETAMALQEWHQMELLTDDVIS 512 (822)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 555556666666666666666666665
No 31
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.85 E-value=1.2e-17 Score=161.49 Aligned_cols=283 Identities=14% Similarity=0.102 Sum_probs=217.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHH-Hc-cCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccC
Q 002666 583 IHGLVKAGFAHETDQLFYAMKKQGCVLDTRAYNTVVDGF-CK-SGKVNKAYQLLEEMKTKGHYPTVVTYGSVIDGLAKID 660 (895)
Q Consensus 583 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~-~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 660 (895)
...|.+.|+++.|.++++-+.+.+-...+.+-+.|-..+ .+ ..++.+|.++-+..+..+-. +......-.+.-...|
T Consensus 426 a~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dry-n~~a~~nkgn~~f~ng 504 (840)
T KOG2003|consen 426 AGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRY-NAAALTNKGNIAFANG 504 (840)
T ss_pred HHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccccc-CHHHhhcCCceeeecC
Confidence 345788999999999998888765444444444433332 33 34678888887777654322 3333333334445679
Q ss_pred CHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 002666 661 RLDEAYMLFEEAKSKGIELNTVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNAYTWNCLLDALVKAEEISEAFVCFQ 740 (895)
Q Consensus 661 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 740 (895)
++++|.+.+++++..+..-....| .+...+...|++++|+++|-++... +..+..++..+...|....+..+|++++.
T Consensus 505 d~dka~~~ykeal~ndasc~ealf-niglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~ 582 (840)
T KOG2003|consen 505 DLDKAAEFYKEALNNDASCTEALF-NIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLM 582 (840)
T ss_pred cHHHHHHHHHHHHcCchHHHHHHH-HhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence 999999999999977533333334 3455678899999999999887652 22377788889999999999999999999
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 002666 741 SMKDLKCTPNHVTYSIIINGLCRVRKFNKAFVFWQEMQKQGFKPNTITYTTMISGLAKAGNITEANGLFERFKENGGVPD 820 (895)
Q Consensus 741 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 820 (895)
++.. -++.|+...+.|.+.|-+.|+-..|++.+-.-.+. ++-+..+...|..-|....-+++|+.+|+++.- +.|+
T Consensus 583 q~~s-lip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~ 658 (840)
T KOG2003|consen 583 QANS-LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPN 658 (840)
T ss_pred Hhcc-cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCcc
Confidence 8876 35678888999999999999999999887666543 566778888888888889999999999999876 8899
Q ss_pred HHHHHHHHHHH-HhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHH
Q 002666 821 SACYNAMMEGL-SNANRAMDAYTLFEETRRKGFNIHTKTCVILLDALHKAECLE 873 (895)
Q Consensus 821 ~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 873 (895)
..-|..|+..| .+.|++.+|+.+|+.+..+ +|.+...+..|.+.....|..+
T Consensus 659 ~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl~d 711 (840)
T KOG2003|consen 659 QSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGLKD 711 (840)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccchh
Confidence 99998877655 5689999999999999888 7999999999999998887543
No 32
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.81 E-value=4.7e-16 Score=150.55 Aligned_cols=477 Identities=13% Similarity=0.096 Sum_probs=281.1
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHhhCCCCCCHHhH-HHHHHHHHccCCHHHHHHHHHHHHhcCCCCC----HHHHHHHHHH
Q 002666 302 SMIGVLCKSKRLEEAVAMFEQMDRNREVPCAYAY-NTMIMGYGSVGKFDEAFSLFERLKQKGCIPS----VIAYNSLLTC 376 (895)
Q Consensus 302 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~ 376 (895)
.|..-|.....+.+|+..|+-+++...-|+.... ..++..|.+...+.+|++++......-+..+ ....+.+.-.
T Consensus 206 nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvt 285 (840)
T KOG2003|consen 206 NLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVT 285 (840)
T ss_pred HHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCee
Confidence 3444555566667777777776666555554333 2345566677777777777776665421111 2234444455
Q ss_pred HHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChh------------hHHHHHH
Q 002666 377 LGKKGRVTEAMKIFEAMKKDARPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEAGLFPNVM------------TVNIMVD 444 (895)
Q Consensus 377 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~------------~~~~l~~ 444 (895)
+.+.|.++.|+..|+......|.-...++. +-++..-|+-++..+.|.+|......||.. ..+.-+.
T Consensus 286 fiq~gqy~dainsfdh~m~~~pn~~a~~nl-~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~ 364 (840)
T KOG2003|consen 286 FIQAGQYDDAINSFDHCMEEAPNFIAALNL-IICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIK 364 (840)
T ss_pred EEecccchhhHhhHHHHHHhCccHHhhhhh-hhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHh
Confidence 667777777777777666554444444443 334444577777777777776543333222 2221111
Q ss_pred -----HHHhcC--ChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcchhhHHHHHHHHH
Q 002666 445 -----RLCKAQ--KLDEAFSIFEGMDHKTCTPDAVTFCSLIDGLGKNGRVDDAYKFYEKMLDTDQIPNAILYTSLIRNFF 517 (895)
Q Consensus 445 -----~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 517 (895)
-..+.. +-++++-.-.+++.--+.|+.. .+ .+-.++.++...-... -...-..-...+.
T Consensus 365 nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa----~g--------~dwcle~lk~s~~~~l--a~dlei~ka~~~l 430 (840)
T KOG2003|consen 365 NDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFA----AG--------CDWCLESLKASQHAEL--AIDLEINKAGELL 430 (840)
T ss_pred hHHHHHHHHhhhhhHHHHHHHHHHHhccccccchh----cc--------cHHHHHHHHHhhhhhh--hhhhhhhHHHHHH
Confidence 111111 1112221112222111112110 00 0111111111111000 0001112233567
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHH--cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 002666 518 KHGRKEDGHKIYKEMVQRGCSPDLMLLNTYMDCVFK--AGETEKGRALFEEIKAQGFVPDVQSYSILIHGLVKAGFAHET 595 (895)
Q Consensus 518 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 595 (895)
+.|+++.|++++.-+.+..-.......+.+...++- -.++..|...-+..+... .-+......-.+.-...|++++|
T Consensus 431 k~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka 509 (840)
T KOG2003|consen 431 KNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKA 509 (840)
T ss_pred hccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHH
Confidence 888888888888877665433333333333333333 235666666666555432 12333333333334456888888
Q ss_pred HHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 002666 596 DQLFYAMKKQGCVLDTRAYNTVVDGFCKSGKVNKAYQLLEEMKTKGHYPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSK 675 (895)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 675 (895)
.+.+++.+..+-. -..+...+.-.+-..|+.++|++.|-++... ...+..+...+.+.|....+...|++++.++...
T Consensus 510 ~~~ykeal~ndas-c~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl 587 (840)
T KOG2003|consen 510 AEFYKEALNNDAS-CTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL 587 (840)
T ss_pred HHHHHHHHcCchH-HHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc
Confidence 8888888765311 1222233344566788899999888776543 2236667777888888888899999988887765
Q ss_pred CCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHH
Q 002666 676 GIELNTVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNAYTWNCLLDALVKAEEISEAFVCFQSMKDLKCTPNHVTYS 755 (895)
Q Consensus 676 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 755 (895)
++.|+.+.+.|...|-+.|+-.+|..++-+--+. ++.+..+...|...|....-+++|+.+|++..- +.|+..-|.
T Consensus 588 -ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwq 663 (840)
T KOG2003|consen 588 -IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQ 663 (840)
T ss_pred -CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHH
Confidence 5778888889999999999988888876555442 445888888888888888888999999988875 678888888
Q ss_pred HHHH-HHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 002666 756 IIIN-GLCRVRKFNKAFVFWQEMQKQGFKPNTITYTTMISGLAKAGN 801 (895)
Q Consensus 756 ~l~~-~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 801 (895)
.++. ++.+.|+|.+|+++|+...++ ++.|......|++.+...|.
T Consensus 664 lmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 664 LMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence 6664 555678999999999888765 77788888888888777664
No 33
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.81 E-value=1.1e-13 Score=135.51 Aligned_cols=518 Identities=12% Similarity=0.108 Sum_probs=326.7
Q ss_pred CHHhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 002666 331 CAYAYNTMIMGYGSVGKFDEAFSLFERLKQKGCIPSVIAYNSLLTCLGKKGRVTEAMKIFEAMKKDARPNNTTYNVLIDM 410 (895)
Q Consensus 331 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 410 (895)
+...|..-+..-..++++..|..+|++++..+. .+...|.-.+.+-.++..+..|..+++......|.-...|...+.+
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd~-r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ym 150 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVDY-RNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYM 150 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhccc-ccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 334444444455566667777777777776542 3556666677777777777777777777777777777777777777
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhhcCCHHHH
Q 002666 411 LCKAGNFEDALKFRDAMKEAGLFPNVMTVNIMVDRLCKAQKLDEAFSIFEGMDHKTCTPDAVTFCSLIDGLGKNGRVDDA 490 (895)
Q Consensus 411 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 490 (895)
--..|+...|.++|++-.+. .|+...|.+.+..-.+-+.++.|..++++..-. .|++.+|...+..-.+.|....|
T Consensus 151 EE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~a 226 (677)
T KOG1915|consen 151 EEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALA 226 (677)
T ss_pred HHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHH
Confidence 77778888888888887774 588888888888888888888888888887654 47888888888888888888888
Q ss_pred HHHHHHHHhCCCC--cchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HhhHHHHHHHHHHcCChhHHHHHHHH
Q 002666 491 YKFYEKMLDTDQI--PNAILYTSLIRNFFKHGRKEDGHKIYKEMVQRGCSPD--LMLLNTYMDCVFKAGETEKGRALFEE 566 (895)
Q Consensus 491 ~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~ 566 (895)
..+|..+++.-.. .+...+.+.+..-..+..++.|.-+|+-.+.. ++.+ ...+..+...--+-|+.....+..-
T Consensus 227 R~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv- 304 (677)
T KOG1915|consen 227 RSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIV- 304 (677)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHh-
Confidence 8888887764111 12223333333334455666677777666664 2222 2233333332222333222111100
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCH
Q 002666 567 IKAQGFVPDVQSYSILIHGLVKAGFAHETDQLFYAMKKQGCVLDTRAYNTVVDGFCKSGKVNKAYQLLEEMKTKGHYPTV 646 (895)
Q Consensus 567 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 646 (895)
.+-.--++.+++.+ +.|-.+|--.+..-...|+.+...+++++++.. ++|-.
T Consensus 305 --------------------------~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ 356 (677)
T KOG1915|consen 305 --------------------------GKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPAS 356 (677)
T ss_pred --------------------------hhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchh
Confidence 00011233334332 445666666666666667777777777777654 33321
Q ss_pred H--hHHH-----HHHHH---HccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHH----HccCCHHHHHHHHHHHHHCCC
Q 002666 647 V--TYGS-----VIDGL---AKIDRLDEAYMLFEEAKSKGIELNTVIYSSLIDGF----GKVGRIDEAYLIMEELMQKGL 712 (895)
Q Consensus 647 ~--~~~~-----l~~~~---~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~g~~~~A~~~~~~~~~~~~ 712 (895)
. .|.. +--++ ....+.+.+.++|+.+++. +|...+++..+--.| .++.++..|.+++..++- .
T Consensus 357 ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~ 433 (677)
T KOG1915|consen 357 EKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--K 433 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--c
Confidence 1 1111 11111 2456777888888888774 555556655443333 456778888888887764 5
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHC-CCCCCHHHHHH
Q 002666 713 TPNAYTWNCLLDALVKAEEISEAFVCFQSMKDLKCTPNHVTYSIIINGLCRVRKFNKAFVFWQEMQKQ-GFKPNTITYTT 791 (895)
Q Consensus 713 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~ 791 (895)
.|...++...+..-.+.++++....+|++.++.+ |.+..+|...+..-...|+.+.|..+|+-++++ .+......|..
T Consensus 434 cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwka 512 (677)
T KOG1915|consen 434 CPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKA 512 (677)
T ss_pred CCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHH
Confidence 6777777777777788888888888888888744 446677777777777788888888888888765 22333456777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-----hcC-----------CHHHHHHHHHHHHHCCC-CC
Q 002666 792 MISGLAKAGNITEANGLFERFKENGGVPDSACYNAMMEGLS-----NAN-----------RAMDAYTLFEETRRKGF-NI 854 (895)
Q Consensus 792 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~-----~~g-----------~~~~A~~~~~~~~~~~~-~~ 854 (895)
.|..-...|.+++|..+++++++ ..+...+|...+..-. +.| +...|+.+|+++...-- ..
T Consensus 513 YIdFEi~~~E~ekaR~LYerlL~--rt~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~ 590 (677)
T KOG1915|consen 513 YIDFEIEEGEFEKARALYERLLD--RTQHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTYLKEST 590 (677)
T ss_pred hhhhhhhcchHHHHHHHHHHHHH--hcccchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhcC
Confidence 77777778888888888888887 4555557776665543 344 56678888887654311 11
Q ss_pred CHhhHHHHHHHH----HhcCCHHHHHHHHHHHHHHHHhh
Q 002666 855 HTKTCVILLDAL----HKAECLEQAAIVGAVLRETAKSQ 889 (895)
Q Consensus 855 ~~~~~~~l~~~~----~~~g~~~~A~~~~~~l~~~~~~~ 889 (895)
+......|..+. ...|...+...|.+++-+.-++.
T Consensus 591 ~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s~mPk~vKKr 629 (677)
T KOG1915|consen 591 PKEERLMLLEAWKNMEETFGTEGDVERVQSKMPKKVKKR 629 (677)
T ss_pred cHHHHHHHHHHHHHHHHhcCchhhHHHHHHhccHHHHhh
Confidence 133333344333 34566666677666666655544
No 34
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.78 E-value=2.2e-13 Score=133.29 Aligned_cols=450 Identities=14% Similarity=0.103 Sum_probs=330.7
Q ss_pred cCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHhHHHHH
Q 002666 190 PAFTAYTTLIGALATVRESNLMLNLFHQMQELGYEVSVHLFTTLIRVFAREGRVDDALFLLDEMKNNAFSVDIVLYNVCI 269 (895)
Q Consensus 190 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 269 (895)
.+...|.....--..++++..|..+|++++... ..+...|...+..-.+...+..|..++++....-+..| ..|...+
T Consensus 71 ~~~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVd-qlWyKY~ 148 (677)
T KOG1915|consen 71 LNMQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVD-QLWYKYI 148 (677)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHH-HHHHHHH
Confidence 345556666666667888999999999998865 44777888888888999999999999999887643333 3455667
Q ss_pred HHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCCHH
Q 002666 270 DCFGKVGKVDMAWKFFHEMKAQGVAPDDVTYTSMIGVLCKSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFD 349 (895)
Q Consensus 270 ~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 349 (895)
.+--..|++..|.++|+...+ ..|+..+|.+.|..-.+-+..+.|..+|++.+-.. |++.+|...+..--+.|+..
T Consensus 149 ymEE~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~H--P~v~~wikyarFE~k~g~~~ 224 (677)
T KOG1915|consen 149 YMEEMLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVH--PKVSNWIKYARFEEKHGNVA 224 (677)
T ss_pred HHHHHhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheec--ccHHHHHHHHHHHHhcCcHH
Confidence 777788999999999999887 58999999999999999999999999999987643 78999999888889999999
Q ss_pred HHHHHHHHHHhcCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCCHHHHHHH--
Q 002666 350 EAFSLFERLKQKGCI--PSVIAYNSLLTCLGKKGRVTEAMKIFEAMKKDARPN--NTTYNVLIDMLCKAGNFEDALKF-- 423 (895)
Q Consensus 350 ~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~-- 423 (895)
.|..+|+.+++.-.. .+...+.+.+..-.++..++.|.-+|+-.....|.+ ...|......--+-|+-....+.
T Consensus 225 ~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv 304 (677)
T KOG1915|consen 225 LARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIV 304 (677)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHh
Confidence 999999988874211 123345555555567788899999999888877776 55676666666666765443332
Q ss_pred ------HHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChh--hHHHHHHH--------HhhcCCH
Q 002666 424 ------RDAMKEAGLFPNVMTVNIMVDRLCKAQKLDEAFSIFEGMDHKTCTPDAV--TFCSLIDG--------LGKNGRV 487 (895)
Q Consensus 424 ------~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~--------~~~~g~~ 487 (895)
++.++..+ +-|..+|--.++.....|+.+...+++++++.. ++|-.. .|...+.. -....+.
T Consensus 305 ~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ 382 (677)
T KOG1915|consen 305 GKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDV 382 (677)
T ss_pred hhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 33444433 346677777888888889999999999998876 333211 12222211 1346788
Q ss_pred HHHHHHHHHHHhCCCCcchhhHHHHHHH----HHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhHHHHH
Q 002666 488 DDAYKFYEKMLDTDQIPNAILYTSLIRN----FFKHGRKEDGHKIYKEMVQRGCSPDLMLLNTYMDCVFKAGETEKGRAL 563 (895)
Q Consensus 488 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 563 (895)
+.+.++|+.+++. ++....++..+--. ..++.+...|.+++...+. ..|...++..++..-.+.++++....+
T Consensus 383 ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkL 459 (677)
T KOG1915|consen 383 ERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKL 459 (677)
T ss_pred HHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHH
Confidence 8889999988885 33455555544433 3457788888888887765 478888888888888888999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCC
Q 002666 564 FEEIKAQGFVPDVQSYSILIHGLVKAGFAHETDQLFYAMKKQG-CVLDTRAYNTVVDGFCKSGKVNKAYQLLEEMKTKGH 642 (895)
Q Consensus 564 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 642 (895)
+++.++-+ +.+..+|......-...|+.+.|..+|.-++... +......|...|..-...|.++.|..+++++++..
T Consensus 460 YEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt- 537 (677)
T KOG1915|consen 460 YEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT- 537 (677)
T ss_pred HHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc-
Confidence 99888875 3367778877777778888899988888887653 11224566677777777888888888888888763
Q ss_pred CCCHHhHHHHH
Q 002666 643 YPTVVTYGSVI 653 (895)
Q Consensus 643 ~p~~~~~~~l~ 653 (895)
+...+|.++.
T Consensus 538 -~h~kvWisFA 547 (677)
T KOG1915|consen 538 -QHVKVWISFA 547 (677)
T ss_pred -ccchHHHhHH
Confidence 3344555444
No 35
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.76 E-value=1.2e-13 Score=130.02 Aligned_cols=505 Identities=13% Similarity=0.097 Sum_probs=291.0
Q ss_pred HccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 002666 343 GSVGKFDEAFSLFERLKQKGCIPSVIAYNSLLTCLGKKGRVTEAMKIFEAMKKDARPNNTTYNVLIDMLCKAGNFEDALK 422 (895)
Q Consensus 343 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 422 (895)
....++..|+.+++--...+-.....+-..+..++...|++++|...|..+.....++...+..|+.++.-.|.+.+|..
T Consensus 33 ls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~ 112 (557)
T KOG3785|consen 33 LSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKS 112 (557)
T ss_pred HhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHH
Confidence 34455555555555544433222233444556666667777777777766665555566666666666666677777766
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCC
Q 002666 423 FRDAMKEAGLFPNVMTVNIMVDRLCKAQKLDEAFSIFEGMDHKTCTPDAVTFCSLIDGLGKNGRVDDAYKFYEKMLDTDQ 502 (895)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 502 (895)
+..+..+ ++..-..+...-.+.++-++-..+.+.+... ..--.+++......-.+.+|+++|++.+..++
T Consensus 113 ~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ 182 (557)
T KOG3785|consen 113 IAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQDNP 182 (557)
T ss_pred HHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCh
Confidence 6544322 2223333444444556555555544443322 12223344444444467777788777776532
Q ss_pred CcchhhHH-HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 002666 503 IPNAILYT-SLIRNFFKHGRKEDGHKIYKEMVQRGCSPDLMLLNTYMDCVFKAGETEKGRALFEEIKAQGFVPDVQSYSI 581 (895)
Q Consensus 503 ~~~~~~~~-~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 581 (895)
+-...+ .+.-+|.+..-++-+.+++...++. ++.+....+.......+.-+-..|..-.+.+...+-. . ..
T Consensus 183 --ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~-~----~~ 254 (557)
T KOG3785|consen 183 --EYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQ-E----YP 254 (557)
T ss_pred --hhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccc-c----ch
Confidence 222222 3445667777777777777777665 2333444444444444443333444444444433211 1 11
Q ss_pred HHHHHHhc-----CChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHhHHHHHHH-
Q 002666 582 LIHGLVKA-----GFAHETDQLFYAMKKQGCVLDTRAYNTVVDGFCKSGKVNKAYQLLEEMKTKGHYPTVVTYGSVIDG- 655 (895)
Q Consensus 582 l~~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~- 655 (895)
.+.-+++. ..-+.|.+++-.+.+. -| .+-..++-.|.+.+++++|..+.+++.-. .|-......++.+
T Consensus 255 f~~~l~rHNLVvFrngEgALqVLP~L~~~--IP--EARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilKgvv~aa 328 (557)
T KOG3785|consen 255 FIEYLCRHNLVVFRNGEGALQVLPSLMKH--IP--EARLNLIIYYLNQNDVQEAISLCKDLDPT--TPYEYILKGVVFAA 328 (557)
T ss_pred hHHHHHHcCeEEEeCCccHHHhchHHHhh--Ch--HhhhhheeeecccccHHHHHHHHhhcCCC--ChHHHHHHHHHHHH
Confidence 22333333 3456777777666553 22 23344566688999999999888776422 2333332222221
Q ss_pred ----HHccCCHHHHHHHHHHHHHcCCCcCHH-HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 002666 656 ----LAKIDRLDEAYMLFEEAKSKGIELNTV-IYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNAYTWNCLLDALVKAE 730 (895)
Q Consensus 656 ----~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 730 (895)
........-|.+.|+-.-+.+..-|.. --.++...+.-..++++.+..+..+...-...|...+ .+..+++..|
T Consensus 329 lGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atg 407 (557)
T KOG3785|consen 329 LGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATG 407 (557)
T ss_pred hhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhc
Confidence 122233556666666554444333322 2234445555556789999888887774333344444 4889999999
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHhcCCHHHHHHHH
Q 002666 731 EISEAFVCFQSMKDLKCTPNHVTYSIIINGLCRVRKFNKAFVFWQEMQKQGFKPNTITYTTMI-SGLAKAGNITEANGLF 809 (895)
Q Consensus 731 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~-~~~~~~g~~~~A~~~~ 809 (895)
++.+|.++|-++....++.+......+..+|.+.++++-|++++-++- .+.+..+...+| ..|.+.+.+=-|.+.|
T Consensus 408 ny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~---t~~e~fsLLqlIAn~CYk~~eFyyaaKAF 484 (557)
T KOG3785|consen 408 NYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTN---TPSERFSLLQLIANDCYKANEFYYAAKAF 484 (557)
T ss_pred ChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcC---CchhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999988765444444444578899999999999988876653 333444544444 4588999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 002666 810 ERFKENGGVPDSACYNAMMEGLSNANRAMDAYTLFEETRRKGFNI-HTKTCVILLDALHKAECLEQAAIVGAVLRETAK 887 (895)
Q Consensus 810 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 887 (895)
+.+.. ..|++..| .|+-.....+|..+......| -.......+..+...++ .+++-+.+.+++++.
T Consensus 485 d~lE~--lDP~pEnW---------eGKRGACaG~f~~l~~~~~~~~p~~~~rEVvhllr~~~n-sq~E~mikvvrkwa~ 551 (557)
T KOG3785|consen 485 DELEI--LDPTPENW---------EGKRGACAGLFRQLANHKTDPIPISQMREVVHLLRMKPN-SQCEFMIKVVRKWAE 551 (557)
T ss_pred hHHHc--cCCCcccc---------CCccchHHHHHHHHHcCCCCCCchhHHHHHHHHHHhCCC-chHHHHHHHHHHHHH
Confidence 98887 67777766 466666777777776653333 23334445555555444 345556666666654
No 36
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.74 E-value=1.9e-14 Score=141.44 Aligned_cols=221 Identities=18% Similarity=0.188 Sum_probs=182.3
Q ss_pred HHHccCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHH
Q 002666 620 GFCKSGKVNKAYQLLEEMKTKGHYPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNTVIYSSLIDGFGKVGRIDE 699 (895)
Q Consensus 620 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 699 (895)
.+.-.|+.-.|..-|+..++....++. .|--+..+|....+.++....|+++.+.+ +.++.+|..-...+.-.+++++
T Consensus 335 F~fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~ 412 (606)
T KOG0547|consen 335 FHFLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEE 412 (606)
T ss_pred hhhhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHH
Confidence 345578899999999999987554333 36667778999999999999999999886 4577788888888888899999
Q ss_pred HHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 002666 700 AYLIMEELMQKGLTP-NAYTWNCLLDALVKAEEISEAFVCFQSMKDLKCTPNHVTYSIIINGLCRVRKFNKAFVFWQEMQ 778 (895)
Q Consensus 700 A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 778 (895)
|+.-|++.+. +.| ++..|..+..+..+.+.++++...|++... .+|.-+..|+....++..++++++|.+.|+...
T Consensus 413 A~aDF~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk-kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai 489 (606)
T KOG0547|consen 413 AIADFQKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKK-KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAI 489 (606)
T ss_pred HHHHHHHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHH
Confidence 9999999998 455 788888898889999999999999999987 456666889999999999999999999999998
Q ss_pred HCCCCCC---------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002666 779 KQGFKPN---------TITYTTMISGLAKAGNITEANGLFERFKENGGVP-DSACYNAMMEGLSNANRAMDAYTLFEETR 848 (895)
Q Consensus 779 ~~~~~p~---------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 848 (895)
+ +.|+ +.+...++..- -.+++..|++++.++++ +.| ....|..|+....+.|+.++|+++|++..
T Consensus 490 ~--LE~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e--~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 490 E--LEPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIE--LDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred h--hccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHc--cCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 7 4454 22333333333 34899999999999998 777 56789999999999999999999999876
Q ss_pred HC
Q 002666 849 RK 850 (895)
Q Consensus 849 ~~ 850 (895)
..
T Consensus 565 ~l 566 (606)
T KOG0547|consen 565 QL 566 (606)
T ss_pred HH
Confidence 65
No 37
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.72 E-value=1.1e-12 Score=126.90 Aligned_cols=318 Identities=20% Similarity=0.268 Sum_probs=185.6
Q ss_pred hcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHH--hcCChh-HHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhh
Q 002666 204 TVRESNLMLNLFHQMQELGYEVSVHLFTTLIRVFA--REGRVD-DALFLLDEMKNNAFSVDIVLYNVCIDCFGKVGKVDM 280 (895)
Q Consensus 204 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~-~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 280 (895)
..|+...+.-+|+.|.+.|.+.++..-..+.+.-+ ...+.- .-.+.|-.|.+.| ..+..+| +.|.+.+
T Consensus 127 S~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW--------K~G~vAd 197 (625)
T KOG4422|consen 127 SSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW--------KSGAVAD 197 (625)
T ss_pred hhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc--------ccccHHH
Confidence 56777788888888888888877776666554433 222222 2233444555554 4445555 4454433
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 002666 281 AWKFFHEMKAQGVAPDDVTYTSMIGVLCKSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLFERLKQ 360 (895)
Q Consensus 281 A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 360 (895)
-+|+.. +-...++.+||.++|+--..+.|.+++++........+..+||.+|.+-.-. ...+++.+|+.
T Consensus 198 --L~~E~~-----PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMis 266 (625)
T KOG4422|consen 198 --LLFETL-----PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMIS 266 (625)
T ss_pred --HHHhhc-----CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHH
Confidence 233322 2366789999999999999999999999987777777889999988764322 22788889998
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHH
Q 002666 361 KGCIPSVIAYNSLLTCLGKKGRVTEAMKIFEAMKKDARPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEAGLFPNVMTVN 440 (895)
Q Consensus 361 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 440 (895)
....||..|+|+++.+..+.|+++.|.+. |.+++.+|++.|+.|...+|.
T Consensus 267 qkm~Pnl~TfNalL~c~akfg~F~~ar~a------------------------------alqil~EmKeiGVePsLsSyh 316 (625)
T KOG4422|consen 267 QKMTPNLFTFNALLSCAAKFGKFEDARKA------------------------------ALQILGEMKEIGVEPSLSSYH 316 (625)
T ss_pred hhcCCchHhHHHHHHHHHHhcchHHHHHH------------------------------HHHHHHHHHHhCCCcchhhHH
Confidence 88899999999999999999888776543 334444555555555555555
Q ss_pred HHHHHHHhcCChhH-HHHHHHHhh----hCCCC----CChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCC----Cc---
Q 002666 441 IMVDRLCKAQKLDE-AFSIFEGMD----HKTCT----PDAVTFCSLIDGLGKNGRVDDAYKFYEKMLDTDQ----IP--- 504 (895)
Q Consensus 441 ~l~~~~~~~g~~~~-A~~~~~~~~----~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~--- 504 (895)
.+|..+++.++..+ +..++.++. .+.+. .+..-|...+..|.+..+.+-|.++-.-+..... .|
T Consensus 317 ~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~ 396 (625)
T KOG4422|consen 317 LIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQH 396 (625)
T ss_pred HHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHH
Confidence 55555555444432 222222221 11111 1222333444444455555555544433322110 01
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 002666 505 NAILYTSLIRNFFKHGRKEDGHKIYKEMVQRGCSPDLMLLNTYMDCVFKAGETEKGRALFEEIKAQG 571 (895)
Q Consensus 505 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 571 (895)
...-|..+....|+....+.-...|+.|+-.-+-|+..+...++.+....+.++-...++..+...|
T Consensus 397 ~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~g 463 (625)
T KOG4422|consen 397 RNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYG 463 (625)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhh
Confidence 1112334444555555555556666666555555555555555555555555555555555555443
No 38
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.70 E-value=3.6e-12 Score=123.33 Aligned_cols=357 Identities=14% Similarity=0.207 Sum_probs=183.7
Q ss_pred hHhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCCHHhHHHHHHH
Q 002666 262 IVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGVAPDDVTYTSMIGVLCKSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMG 341 (895)
Q Consensus 262 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 341 (895)
..+|..+|.++|+-...+.|.+++++..+...+.+..++|.+|.+-.-. ...++..+|......||..|+|+++.+
T Consensus 207 ~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl~TfNalL~c 282 (625)
T KOG4422|consen 207 DETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNLFTFNALLSC 282 (625)
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCchHhHHHHHHH
Confidence 3455555555555555555555555555544444555555555443211 114555555555555555555555555
Q ss_pred HHccCCHHH----HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHhc---------CCCCCHHHHHHH
Q 002666 342 YGSVGKFDE----AFSLFERLKQKGCIPSVIAYNSLLTCLGKKGRVTE-AMKIFEAMKK---------DARPNNTTYNVL 407 (895)
Q Consensus 342 ~~~~g~~~~----A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~---------~~~~~~~~~~~l 407 (895)
..+.|+++. |.+++.+|++.|+.|...+|..+|..+++.++..+ |..++.++.. ..|.+...+...
T Consensus 283 ~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~A 362 (625)
T KOG4422|consen 283 AAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSA 362 (625)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHH
Confidence 555555443 23444555566666666666666666655555422 3333333321 123444455555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCC----CCCC---hhhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHH
Q 002666 408 IDMLCKAGNFEDALKFRDAMKEAG----LFPN---VMTVNIMVDRLCKAQKLDEAFSIFEGMDHKTCTPDAVTFCSLIDG 480 (895)
Q Consensus 408 ~~~~~~~g~~~~A~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 480 (895)
...+....+.+-|.++..-+.... +.|+ ...|..+....|+....+....+++.|.-.-.-|+..+...++++
T Consensus 363 M~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA 442 (625)
T KOG4422|consen 363 MSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRA 442 (625)
T ss_pred HHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHH
Confidence 555556666666666544333210 1122 234556667777778888888888888777666777777778887
Q ss_pred HhhcCCHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHc-CCh-h
Q 002666 481 LGKNGRVDDAYKFYEKMLDTDQIPNAILYTSLIRNFFKHGRKEDGHKIYKEMVQRGCSPDLMLLNTYMDCVFKA-GET-E 558 (895)
Q Consensus 481 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~-~ 558 (895)
....|.++-.-+++..++..|...+...... ++..+......|+...-..+-....+. -++ +
T Consensus 443 ~~v~~~~e~ipRiw~D~~~~ght~r~~l~ee----------------il~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e 506 (625)
T KOG4422|consen 443 LDVANRLEVIPRIWKDSKEYGHTFRSDLREE----------------ILMLLARDKLHPLTPEREQLQVAFAKCAADIKE 506 (625)
T ss_pred HhhcCcchhHHHHHHHHHHhhhhhhHHHHHH----------------HHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHH
Confidence 7778888877777777777664433322222 222232222233222111111111100 001 1
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCCHHhHH---HHHHHHHccCChHHHHHHH
Q 002666 559 KGRALFEEIKAQGFVPDVQSYSILIHGLVKAGFAHETDQLFYAMKKQGC-VLDTRAYN---TVVDGFCKSGKVNKAYQLL 634 (895)
Q Consensus 559 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~---~l~~~~~~~g~~~~A~~~~ 634 (895)
.....-.++.+.. ......+..+-.+.+.|..++|.+++..+.+.+- .|-....+ -++..-...++...|+..+
T Consensus 507 ~~e~~~~R~r~~~--~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~l 584 (625)
T KOG4422|consen 507 AYESQPIRQRAQD--WPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVL 584 (625)
T ss_pred HHHhhHHHHHhcc--CChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHH
Confidence 1111112222332 2334445555566777777777777776654321 22333333 3444445566666666666
Q ss_pred HHHHHC
Q 002666 635 EEMKTK 640 (895)
Q Consensus 635 ~~~~~~ 640 (895)
+-|...
T Consensus 585 Q~a~~~ 590 (625)
T KOG4422|consen 585 QLASAF 590 (625)
T ss_pred HHHHHc
Confidence 666554
No 39
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.70 E-value=1.9e-13 Score=134.48 Aligned_cols=219 Identities=17% Similarity=0.183 Sum_probs=111.8
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCCHHHHHHH
Q 002666 589 AGFAHETDQLFYAMKKQGCVLDTRAYNTVVDGFCKSGKVNKAYQLLEEMKTKGHYPTVVTYGSVIDGLAKIDRLDEAYML 668 (895)
Q Consensus 589 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~ 668 (895)
.|+.-.|...|+..++....++. .|-.+..+|....+.++-.+.|.+..+.+.. ++.+|..-.+++.-.+++++|..-
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aD 416 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIAD 416 (606)
T ss_pred cCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHH
Confidence 34455555555555544322221 1444445555555555555555555554433 444555555555555566666666
Q ss_pred HHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 002666 669 FEEAKSKGIELNTVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNAYTWNCLLDALVKAEEISEAFVCFQSMKDLKCT 748 (895)
Q Consensus 669 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 748 (895)
|++++... +.+...|..+.-+..+.++++++...|++..++ ++..+..|+....++..++++++|.+.|+..++....
T Consensus 417 F~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~ 494 (606)
T KOG0547|consen 417 FQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPR 494 (606)
T ss_pred HHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccc
Confidence 66655543 223444444444445555666666666665553 3445555555556666666666666666655542211
Q ss_pred -----CCHHHHH--HHHHHHHhcCCHhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002666 749 -----PNHVTYS--IIINGLCRVRKFNKAFVFWQEMQKQGFKPN-TITYTTMISGLAKAGNITEANGLFERFKE 814 (895)
Q Consensus 749 -----p~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 814 (895)
.+..++- .++. +.-.+++..|..++.++.+ +.|. ...|..|...-...|+.++|+++|++...
T Consensus 495 ~~~~~v~~~plV~Ka~l~-~qwk~d~~~a~~Ll~KA~e--~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 495 EHLIIVNAAPLVHKALLV-LQWKEDINQAENLLRKAIE--LDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred cccccccchhhhhhhHhh-hchhhhHHHHHHHHHHHHc--cCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 0111111 1111 1122566666666666665 3443 23566666666666666666666666554
No 40
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.69 E-value=3e-11 Score=127.85 Aligned_cols=710 Identities=14% Similarity=0.063 Sum_probs=356.7
Q ss_pred CCCCCHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHH
Q 002666 117 DQAHSLEAYNSLLMVMAVSKNFEPLEEILGEMSLAGIGPTNNTCIELVVSCVKSKMLREAFDIIQTMRKFKFRPAFTAYT 196 (895)
Q Consensus 117 ~~~~~~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 196 (895)
+..++..+|..++.-|+..|+.+.|- +|.-|..+..+.+...++.++.+....++.+.+. .|...+|.
T Consensus 20 gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDtyt 87 (1088)
T KOG4318|consen 20 GILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADTYT 87 (1088)
T ss_pred cCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhHHH
Confidence 44556689999999999999999998 9999998889999999999999998888887764 67889999
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHH-------cCCCcCH--------------HHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 002666 197 TLIGALATVRESNLMLNLFHQMQE-------LGYEVSV--------------HLFTTLIRVFAREGRVDDALFLLDEMKN 255 (895)
Q Consensus 197 ~l~~~~~~~~~~~~a~~~~~~~~~-------~~~~~~~--------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 255 (895)
.|..+|...|+......+-+.+.. .|+-... ..-...+....-.|-++.+++++..+..
T Consensus 88 ~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pv 167 (1088)
T KOG4318|consen 88 NLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPV 167 (1088)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCc
Confidence 999999999987663322222221 1111000 1112233444455556666666555432
Q ss_pred CCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCCHHhH
Q 002666 256 NAFSVDIVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGVAPDDVTYTSMIGVLCKSKRLEEAVAMFEQMDRNREVPCAYAY 335 (895)
Q Consensus 256 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 335 (895)
.. ... ++...++-+.... .-.+++....+...-.|++.+|..++.+-...|+.+.|..++.+|.+.|...+..-|
T Consensus 168 sa-~~~--p~~vfLrqnv~~n--tpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyF 242 (1088)
T KOG4318|consen 168 SA-WNA--PFQVFLRQNVVDN--TPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYF 242 (1088)
T ss_pred cc-ccc--hHHHHHHHhccCC--chHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccc
Confidence 21 011 1111122222222 222333332222211589999999999999999999999999999999988777777
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 002666 336 NTMIMGYGSVGKFDEAFSLFERLKQKGCIPSVIAYNSLLTCLGKKGRVTEAMKIFEAMKKDARPNNTTYNVLIDMLCKAG 415 (895)
Q Consensus 336 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 415 (895)
-.|+.+ .++..-+..++.-|.+.|+.|+..|+...+..+..+|....+.. ..+....+.+-...-.-.|
T Consensus 243 wpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e--------~sq~~hg~tAavrsaa~rg 311 (1088)
T KOG4318|consen 243 WPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEE--------GSQLAHGFTAAVRSAACRG 311 (1088)
T ss_pred hhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhccc--------ccchhhhhhHHHHHHHhcc
Confidence 677655 88888999999999999999999999877777766555222211 1222222222222222223
Q ss_pred -----CHHHH-----HHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhhhCC--CC-CChhhHHHHHHHHh
Q 002666 416 -----NFEDA-----LKFRDAMKEAGLFPNVMTVNIMVDRLCKAQKLDEAFSIFEGMDHKT--CT-PDAVTFCSLIDGLG 482 (895)
Q Consensus 416 -----~~~~A-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~-~~~~~~~~l~~~~~ 482 (895)
..+.- ...+.+..-.|+......|. +..-+...|+-++..++-..+..-. .. .++..+..++.-|.
T Consensus 312 ~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws-~c~~l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyF 390 (1088)
T KOG4318|consen 312 LLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWS-MCEKLRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYF 390 (1088)
T ss_pred cHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHH-HHHHHHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHH
Confidence 11111 11111211223322223333 2223334677677666665554321 11 12334444444443
Q ss_pred hcCC--HHHHHHHHHHHHhCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCC-------CCHhhHHHHHH
Q 002666 483 KNGR--VDDAYKFYEKMLDTDQIPNAILYTSLIRNFFKHGRKEDGHKIYKEMVQ----RGCS-------PDLMLLNTYMD 549 (895)
Q Consensus 483 ~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~-------~~~~~~~~l~~ 549 (895)
+.-+ ..+-.....+.++.. .+....-.+.....+. +...+..-+..+.. +... +-....+.++.
T Consensus 391 rr~e~~~~~~i~~~~qgls~~--l~se~tp~vsell~~l-rkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l 467 (1088)
T KOG4318|consen 391 RRIERHICSRIYYAGQGLSLN--LNSEDTPRVSELLENL-RKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHL 467 (1088)
T ss_pred HHHHhhHHHHHHHHHHHHHhh--hchhhhHHHHHHHHHh-CcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHH
Confidence 3211 111111111111110 0111111111111111 11112211111110 0001 11123334444
Q ss_pred HHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCCCHHhHHHHHHHHHccCCh
Q 002666 550 CVFKAGETEKGRALFEEIKAQGFVPDVQSYSILIHGLVKAGFAHETDQLFYAMKKQ--GCVLDTRAYNTVVDGFCKSGKV 627 (895)
Q Consensus 550 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~ 627 (895)
.++..-+..+++..-+.....-+. ..|..|++.++.....+.|..+..+.... .+..|..-+..+.+...+.+..
T Consensus 468 ~l~se~n~lK~l~~~ekye~~lf~---g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l 544 (1088)
T KOG4318|consen 468 TLNSEYNKLKILCDEEKYEDLLFA---GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAIL 544 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh---hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHH
Confidence 555555555555444433332111 45667777777777777777766665432 1234455566677777777777
Q ss_pred HHHHHHHHHHHHCCCC-CC-HHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHH
Q 002666 628 NKAYQLLEEMKTKGHY-PT-VVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNTVIYSSLIDGFGKVGRIDEAYLIME 705 (895)
Q Consensus 628 ~~A~~~~~~~~~~~~~-p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 705 (895)
..+..++.++.+.-.. |+ ..++-.+.+.....|+.+.-.++++-+...|+.-+ .-++....+.++...|.+.++
T Consensus 545 ~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~et----gPl~~vhLrkdd~s~a~ea~e 620 (1088)
T KOG4318|consen 545 YDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSET----GPLWMVHLRKDDQSAAQEAPE 620 (1088)
T ss_pred HHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhc----ccceEEEeeccchhhhhhcch
Confidence 7777777777653111 11 22333444455556666666666666555543221 112222233334444433333
Q ss_pred HHHHCCCCCCHHHHHHHHH---------------------HHHhcCCHHHHHHHHHHH-----------HhcC-CCC---
Q 002666 706 ELMQKGLTPNAYTWNCLLD---------------------ALVKAEEISEAFVCFQSM-----------KDLK-CTP--- 749 (895)
Q Consensus 706 ~~~~~~~~p~~~~~~~l~~---------------------~~~~~g~~~~A~~~~~~~-----------~~~~-~~p--- 749 (895)
..... .+|.+.....+.. .|.+.|++.+|-++.+.= .+.| +.|
T Consensus 621 ~~~qk-yk~~P~~~e~lcrlv~ke~td~~qk~mDls~~iq~f~k~g~~~~a~di~etpG~r~r~~RDr~~de~e~~~lEl 699 (1088)
T KOG4318|consen 621 PEEQK-YKPYPKDLEGLCRLVYKETTDSPQKTMDLSIPIQKFEKLGSCVDAGDITETPGVRCRNGRDRDTDEGEIVPLEL 699 (1088)
T ss_pred HHHHH-hcCChHHHHHHHHHHHhhccccHHHHHhhcchhHHHHhcccccchhhccccCcccccCCCccccccCccccHHH
Confidence 32221 1111111111111 133444444333332210 0000 000
Q ss_pred ------CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHC-CCCC
Q 002666 750 ------NHVTYSIIINGLCRVRKFNKAFVFWQEMQKQGFKPNTITYTTMISGLAKAG---NITEANGLFERFKEN-GGVP 819 (895)
Q Consensus 750 ------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~-~~~p 819 (895)
+......++..|.+.|+++.|..+|.++. +.|+..+...|...+.+.. ++-++....++..+. ...|
T Consensus 700 l~elt~~lg~~dRLL~sy~~~g~~erA~glwnK~Q---V~k~~~~l~~LAsIlr~~n~evdvPe~q~e~ekas~~~~~f~ 776 (1088)
T KOG4318|consen 700 LLELTHELGKNDRLLQSYLEEGRIERASGLWNKDQ---VSKSPMKLFHLASILRRMNEEVDVPEIQAETEKASELRTLFP 776 (1088)
T ss_pred HHHHHhHhHHHHHHHHHHHhhhHHHHHHhHHhhCc---CCcchHHHHHHHHHHHhhchhccchhHHHHHHHHHhcccccc
Confidence 00112235556667777777777777765 5566665555555544332 333444444444331 1112
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc
Q 002666 820 -DSACYNAMMEGLSNANRAMDAYTLFEETRRKGFNIHTKTCVILLDALHKA 869 (895)
Q Consensus 820 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 869 (895)
+...|..-+....+....+.|.+.+++..+...+.+...+..+.+++...
T Consensus 777 ttt~~~~~~a~~a~q~~qkkaAkk~f~r~eeq~~v~tad~ls~f~k~L~~n 827 (1088)
T KOG4318|consen 777 TTTCYYEGYAFFATQTEQKKAAKKCFERLEEQLTVSTADELSDFLKCLVKN 827 (1088)
T ss_pred cchHhhhhhHHHHhhHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhc
Confidence 22223333333344444445666666666555455555555555555443
No 41
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.69 E-value=1.3e-09 Score=111.70 Aligned_cols=319 Identities=13% Similarity=0.119 Sum_probs=192.1
Q ss_pred cCCHHHHHHHHHHHHHcCCCCC------HhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhc
Q 002666 519 HGRKEDGHKIYKEMVQRGCSPD------LMLLNTYMDCVFKAGETEKGRALFEEIKAQGFVPD---VQSYSILIHGLVKA 589 (895)
Q Consensus 519 ~~~~~~A~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~ 589 (895)
.|+..+-...|.++... +.|. ...+..+...|...|+.+.|..+|++..+-.++.- ..+|..-...-.+.
T Consensus 360 e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh 438 (835)
T KOG2047|consen 360 EGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRH 438 (835)
T ss_pred cCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhh
Confidence 44455555555555443 2221 22344555555666666666666666555432211 12233333333444
Q ss_pred CChHHHHHHHHHHHHcCC-----------------CCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHhHHHH
Q 002666 590 GFAHETDQLFYAMKKQGC-----------------VLDTRAYNTVVDGFCKSGKVNKAYQLLEEMKTKGHYPTVVTYGSV 652 (895)
Q Consensus 590 g~~~~A~~~~~~~~~~~~-----------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 652 (895)
.+++.|..+++......- ..+...|...++.--..|-++....+++++++..+. ++......
T Consensus 439 ~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~Ny 517 (835)
T KOG2047|consen 439 ENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINY 517 (835)
T ss_pred hhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHH
Confidence 555555555554432110 113456666677667778889999999999887554 44443334
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCcCH-HHHHHHHHHHHc---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH--H
Q 002666 653 IDGLAKIDRLDEAYMLFEEAKSKGIELNT-VIYSSLIDGFGK---VGRIDEAYLIMEELMQKGLTPNAYTWNCLLDA--L 726 (895)
Q Consensus 653 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~--~ 726 (895)
...+....-++++.+.+++-+..--.|+. .+|+..+..+.+ ..+++.|..+|+++++ |.+|...-+..|+.+ -
T Consensus 518 AmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lE 596 (835)
T KOG2047|consen 518 AMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLE 596 (835)
T ss_pred HHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHH
Confidence 44455666788899888877665333443 366666555443 2469999999999999 666643333333322 3
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCH--HHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHH---HHHHHHhcCC
Q 002666 727 VKAEEISEAFVCFQSMKDLKCTPNH--VTYSIIINGLCRVRKFNKAFVFWQEMQKQGFKPNTITYTT---MISGLAKAGN 801 (895)
Q Consensus 727 ~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~---l~~~~~~~g~ 801 (895)
.+.|-...|+.+++++.. ++++.. ..|+..|.--...=-+..-.++|+++.+. -|+..+-.. ....=++.|.
T Consensus 597 Ee~GLar~amsiyerat~-~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~--Lp~~~~r~mclrFAdlEtklGE 673 (835)
T KOG2047|consen 597 EEHGLARHAMSIYERATS-AVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES--LPDSKAREMCLRFADLETKLGE 673 (835)
T ss_pred HHhhHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh--CChHHHHHHHHHHHHHhhhhhh
Confidence 356888899999999876 334432 46776665433333344556788888873 566544333 3334567899
Q ss_pred HHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHH
Q 002666 802 ITEANGLFERFKENGGVP--DSACYNAMMEGLSNANRAMDAYTLF 844 (895)
Q Consensus 802 ~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~ 844 (895)
.+.|..++.-..+- ..| +...|...=..-.++|+-+.-.+++
T Consensus 674 idRARaIya~~sq~-~dPr~~~~fW~twk~FEvrHGnedT~keML 717 (835)
T KOG2047|consen 674 IDRARAIYAHGSQI-CDPRVTTEFWDTWKEFEVRHGNEDTYKEML 717 (835)
T ss_pred HHHHHHHHHhhhhc-CCCcCChHHHHHHHHHHHhcCCHHHHHHHH
Confidence 99999999888774 344 6788888888889999955444443
No 42
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=7.1e-12 Score=122.91 Aligned_cols=293 Identities=9% Similarity=0.064 Sum_probs=173.7
Q ss_pred HHHHhhcCCHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CCHhhHHHHHHHHHHcC
Q 002666 478 IDGLGKNGRVDDAYKFYEKMLDTDQIPNAILYTSLIRNFFKHGRKEDGHKIYKEMVQRGCS--PDLMLLNTYMDCVFKAG 555 (895)
Q Consensus 478 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~ 555 (895)
..++....+.+++..-+......|.+.+...-+..+.+.....++++|+.+|+++.+..+- .|..+|..++. .+..
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LY--v~~~ 311 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLY--VKND 311 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHH--HHhh
Confidence 3344444556666666666666655545544455555555666666666666666655210 13334443332 1211
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHH
Q 002666 556 ETEKGRALFEEIKAQGFVPDVQSYSILIHGLVKAGFAHETDQLFYAMKKQGCVLDTRAYNTVVDGFCKSGKVNKAYQLLE 635 (895)
Q Consensus 556 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 635 (895)
+.. +..+.+-.-.--+--+.|..++.+.|.-.++.++|...|++.++.+ +....+|+.+..-|....+...|++.++
T Consensus 312 ~sk--Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYR 388 (559)
T KOG1155|consen 312 KSK--LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYR 388 (559)
T ss_pred hHH--HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHH
Confidence 111 1111111110001233456666677777777777777777777764 3345667777777777777777777777
Q ss_pred HHHHCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC
Q 002666 636 EMKTKGHYPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNTVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPN 715 (895)
Q Consensus 636 ~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 715 (895)
.+++.++. |...|..+.++|.-.+.+.=|+-+|+++.+.. |.|...|.+|+.+|.+.+++++|++.|......|-. +
T Consensus 389 rAvdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e 465 (559)
T KOG1155|consen 389 RAVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-E 465 (559)
T ss_pred HHHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-c
Confidence 77766433 66677777777777777777777777777653 557777777777777777777777777777775422 4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHh----cCCCCC--HHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 002666 716 AYTWNCLLDALVKAEEISEAFVCFQSMKD----LKCTPN--HVTYSIIINGLCRVRKFNKAFVFWQEMQ 778 (895)
Q Consensus 716 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 778 (895)
...+..|+..|-+.++.++|...|++.++ .|...+ ..+...|..-+.+.+++++|..+.....
T Consensus 466 ~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 466 GSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVL 534 (559)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHh
Confidence 56677777777777777777777776654 122222 1222234555566666666665554443
No 43
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.68 E-value=1.1e-10 Score=119.81 Aligned_cols=591 Identities=14% Similarity=0.112 Sum_probs=349.7
Q ss_pred hcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCCHHHHHH
Q 002666 274 KVGKVDMAWKFFHEMKAQGVAPDDVTYTSMIGVLCKSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFS 353 (895)
Q Consensus 274 ~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 353 (895)
..+++...+++.+.+.+. .+-...|....+-.++..|+-++|.......+..++. +.++|..++..+-...++++|++
T Consensus 19 E~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~dK~Y~eaiK 96 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSDKKYDEAIK 96 (700)
T ss_pred HHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhhhhHHHHHH
Confidence 456666666666666653 2223344444555566677777777777777776665 67777777777777777777777
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-C
Q 002666 354 LFERLKQKGCIPSVIAYNSLLTCLGKKGRVTEAMKIFEAMKKDARPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEAG-L 432 (895)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~ 432 (895)
.|..+...+. .|...+.-+.-.-.+.|+++.....-....+..|.....|..++.++.-.|++..|..+++...+.. -
T Consensus 97 cy~nAl~~~~-dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~ 175 (700)
T KOG1156|consen 97 CYRNALKIEK-DNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNT 175 (700)
T ss_pred HHHHHHhcCC-CcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 7777777653 2566666666666777777777777777777777777788888888888888888888887776543 2
Q ss_pred CCChhhHHHH------HHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcch
Q 002666 433 FPNVMTVNIM------VDRLCKAQKLDEAFSIFEGMDHKTCTPDAVTFCSLIDGLGKNGRVDDAYKFYEKMLDTDQIPNA 506 (895)
Q Consensus 433 ~~~~~~~~~l------~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 506 (895)
.|+...+... .......|.+++|.+.+...... +......-..-...+.+.+++++|..+|..++...| .+.
T Consensus 176 ~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnP-dn~ 253 (700)
T KOG1156|consen 176 SPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNP-DNL 253 (700)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCc-hhH
Confidence 3555444332 22345667788888777654333 111222334456677888999999999999988753 244
Q ss_pred hhHHHHHHHHHhcCCHHHHH-HHHHHHHHcCCCCCHhhHHHH-HHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 002666 507 ILYTSLIRNFFKHGRKEDGH-KIYKEMVQRGCSPDLMLLNTY-MDCVFKAGETEKGRALFEEIKAQGFVPDVQSYSILIH 584 (895)
Q Consensus 507 ~~~~~l~~~~~~~~~~~~A~-~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 584 (895)
..|..+..++.+..+..++. .+|....+. .|-......+ +.......-.+..-.++......|+++-... +..
T Consensus 254 ~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~d---l~S 328 (700)
T KOG1156|consen 254 DYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKD---LRS 328 (700)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhh---hHH
Confidence 44445555554444444454 555555443 2211111111 1111112222334445566666665443222 222
Q ss_pred HHHhcCChHHHHHHHHHHH--------HcC----------CCCCHHhH--HHHHHHHHccCChHHHHHHHHHHHHCCCCC
Q 002666 585 GLVKAGFAHETDQLFYAMK--------KQG----------CVLDTRAY--NTVVDGFCKSGKVNKAYQLLEEMKTKGHYP 644 (895)
Q Consensus 585 ~~~~~g~~~~A~~~~~~~~--------~~~----------~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 644 (895)
.|-.-.... +++++. ..| -+|.+..| ..++..|-..|+++.|..+++..+.+ .|
T Consensus 329 Lyk~p~k~~----~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TP 402 (700)
T KOG1156|consen 329 LYKDPEKVA----FLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TP 402 (700)
T ss_pred HHhchhHhH----HHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--Cc
Confidence 222111111 222221 110 14555444 45778888999999999999999876 55
Q ss_pred CHH-hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC--C----HH
Q 002666 645 TVV-TYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNTVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTP--N----AY 717 (895)
Q Consensus 645 ~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~----~~ 717 (895)
+.. .|..-..++...|.+++|..+++++.+.+ .+|..+-..-+.-..+.++.++|.++.....+.|... + ..
T Consensus 403 TliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqc 481 (700)
T KOG1156|consen 403 TLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQC 481 (700)
T ss_pred hHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhh
Confidence 544 56666788899999999999999999886 4566555566667778899999999999998876411 1 11
Q ss_pred HHHHH--HHHHHhcCCHHHHHHHHHHHHhc-----CCCCCHHHHH----------HHHHHHHhc-------CCHhHHHHH
Q 002666 718 TWNCL--LDALVKAEEISEAFVCFQSMKDL-----KCTPNHVTYS----------IIINGLCRV-------RKFNKAFVF 773 (895)
Q Consensus 718 ~~~~l--~~~~~~~g~~~~A~~~~~~~~~~-----~~~p~~~~~~----------~l~~~~~~~-------g~~~~A~~~ 773 (895)
.|-.+ +.+|.+.|++..|+.-|..+.+. .-.-|..||. -|+...-.. .-...|+++
T Consensus 482 mWf~~E~g~ay~r~~k~g~ALKkfh~i~k~~~~~~~dqfDfhtyc~rk~tlrsYv~ll~~~d~L~~~p~y~~Aa~~Ai~i 561 (700)
T KOG1156|consen 482 MWFQLEDGEAYLRQNKLGLALKKFHEIEKHYKTWSEDQFDFHTYCMRKGTLRSYVELLEWEDNLRSSPYYLRAAKGAIEI 561 (700)
T ss_pred HHHhHhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhHHHHHHhcCcHHHHHHHHHHHHhhccChHHHHHHHHHHHH
Confidence 22222 45677888888887766655431 1123444432 222211100 012446677
Q ss_pred HHHHHHCC-CC-CCHHHHHHHH----HHHHh-cCCHHHHHHHHHHHHH---------CCCC--CCHHHHHHHHHHHHhcC
Q 002666 774 WQEMQKQG-FK-PNTITYTTMI----SGLAK-AGNITEANGLFERFKE---------NGGV--PDSACYNAMMEGLSNAN 835 (895)
Q Consensus 774 ~~~~~~~~-~~-p~~~~~~~l~----~~~~~-~g~~~~A~~~~~~~~~---------~~~~--p~~~~~~~l~~~~~~~g 835 (895)
|-.|.+.. .. +.......+- ....+ ..+..+|.+.-+.+.+ .|.+ ||.. -.+..+.+..
T Consensus 562 Yl~l~d~p~~~~~~~~~~~~ms~e~kk~~~k~rk~~kk~~~e~~~~~~~~~~~~~s~~~~~~~~d~~---~~gekL~~t~ 638 (700)
T KOG1156|consen 562 YLRLHDSPNMYTNKADEIEKMSDEEKKIKKKQRKAKKKAKKEAKKKKDKKKKEAKSQSGKPVDIDED---PFGEKLLKTE 638 (700)
T ss_pred HHHHhcCcccccccchhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCc---chhhhHhhcC
Confidence 77776542 00 1111111111 11101 1122233332222211 1222 3333 4455666655
Q ss_pred C-HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 002666 836 R-AMDAYTLFEETRRKGFNIHTKTCVILLDALHKAECLEQAAIVGAVLRET 885 (895)
Q Consensus 836 ~-~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~l~~~ 885 (895)
+ .++|.+++..+...+ +....++..-...|.+.|++--|....+.....
T Consensus 639 ~Pl~ea~kf~~~l~~~~-~~~~~~~iL~~ely~rk~k~~l~~~~~~~~~~~ 688 (700)
T KOG1156|consen 639 DPLEEARKFLPNLQHKG-KEKGETYILSFELYYRKGKFLLALACLNNAEGI 688 (700)
T ss_pred ChHHHHHHHHHHHHHhc-ccchhhhhhhHHHHHHHHHHHHHHHHHHhhhhh
Confidence 4 578999999988885 778888888889999999999988866655443
No 44
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=1.8e-12 Score=130.40 Aligned_cols=502 Identities=11% Similarity=0.033 Sum_probs=295.6
Q ss_pred HhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 002666 333 YAYNTMIMGYGSVGKFDEAFSLFERLKQKGCIPSVIAYNSLLTCLGKKGRVTEAMKIFEAMKKDARPNNTTYNVLIDMLC 412 (895)
Q Consensus 333 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 412 (895)
.-+..+.+-+..+.++.-|.-+-+++...+. |+.-...+++++.-.|+++.|..+...- +....+..+....+.++.
T Consensus 17 ~~~~~~~r~~l~q~~y~~a~f~adkV~~l~~--dp~d~~~~aq~l~~~~~y~ra~~lit~~-~le~~d~~cryL~~~~l~ 93 (611)
T KOG1173|consen 17 EKYRRLVRDALMQHRYKTALFWADKVAGLTN--DPADIYWLAQVLYLGRQYERAAHLITTY-KLEKRDIACRYLAAKCLV 93 (611)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHhccC--ChHHHHHHHHHHHhhhHHHHHHHHHHHh-hhhhhhHHHHHHHHHHHH
Confidence 3344444445555566666666666655543 3334445666677777777766665543 223445666666777777
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhhcCCHHHHHH
Q 002666 413 KAGNFEDALKFRDAMKEAGLFPNVMTVNIMVDRLCKAQKLDEAFSIFEGMDHKTCTPDAVTFCSLIDGLGKNGRVDDAYK 492 (895)
Q Consensus 413 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 492 (895)
+..++++|..++..... .-+...|..-- + ...-..+.+. +.. +.......+..-+..|....+.++|..
T Consensus 94 ~lk~~~~al~vl~~~~~---~~~~f~yy~~~-~-~~~l~~n~~~----~~~--~~~~essic~lRgk~y~al~n~~~ar~ 162 (611)
T KOG1173|consen 94 KLKEWDQALLVLGRGHV---ETNPFSYYEKD-A-ANTLELNSAG----EDL--MINLESSICYLRGKVYVALDNREEARD 162 (611)
T ss_pred HHHHHHHHHHHhcccch---hhcchhhcchh-h-hceeccCccc----ccc--cccchhceeeeeeehhhhhccHHHHHH
Confidence 77777777776653210 01111110000 0 0000001111 000 011122223333444555666777777
Q ss_pred HHHHHHhCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC----CCCHhhHHHHHHHH-HHcCChhHHHHHHHHH
Q 002666 493 FYEKMLDTDQIPNAILYTSLIRNFFKHGRKEDGHKIYKEMVQRGC----SPDLMLLNTYMDCV-FKAGETEKGRALFEEI 567 (895)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~~~~~l~~~~-~~~~~~~~a~~~~~~~ 567 (895)
.|.+++..++. ....+..++....- .+.+.++.+..... .-+......+.... ++.-+ +.....-.+.
T Consensus 163 ~Y~~Al~~D~~-c~Ea~~~lvs~~ml-----t~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n-~~~~~r~~~~ 235 (611)
T KOG1173|consen 163 KYKEALLADAK-CFEAFEKLVSAHML-----TAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRN-EESLTRNEDE 235 (611)
T ss_pred HHHHHHhcchh-hHHHHHHHHHHHhc-----chhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhcc-ccccccCchh
Confidence 77777765432 33333333333211 11111121111100 01111111111111 00000 0000000001
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHH
Q 002666 568 KAQGFVPDVQSYSILIHGLVKAGFAHETDQLFYAMKKQGCVLDTRAYNTVVDGFCKSGKVNKAYQLLEEMKTKGHYPTVV 647 (895)
Q Consensus 568 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 647 (895)
.-.+...+.........-+...+++.+..++++.+.+.. ++....+..-|.++...|+..+-..+=.++.+.- +....
T Consensus 236 sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~ 313 (611)
T KOG1173|consen 236 SLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKAL 313 (611)
T ss_pred hhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCc
Confidence 111223345555556666777888899999988888875 5666666666778888888777777777777763 33667
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHH
Q 002666 648 TYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNTVIYSSLIDGFGKVGRIDEAYLIMEELMQK--GLTPNAYTWNCLLDA 725 (895)
Q Consensus 648 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~~~~~~~l~~~ 725 (895)
+|-++.--|...|+..+|+.+|.++...+ +.=...|..++..|.-.|.-++|+..|..+.+. |.. -+..| ++.-
T Consensus 314 sW~aVg~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~h-lP~LY--lgme 389 (611)
T KOG1173|consen 314 SWFAVGCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCH-LPSLY--LGME 389 (611)
T ss_pred chhhHHHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCc-chHHH--HHHH
Confidence 88888888888899999999998887654 223457888888888889999999988888772 211 22233 4445
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHC--CCCC----CHHHHHHHHHHHHhc
Q 002666 726 LVKAEEISEAFVCFQSMKDLKCTPNHVTYSIIINGLCRVRKFNKAFVFWQEMQKQ--GFKP----NTITYTTMISGLAKA 799 (895)
Q Consensus 726 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p----~~~~~~~l~~~~~~~ 799 (895)
|...++++-|.+.|.+..... |.|+..++-+.-.....+.+.+|..+|+..+.. ...+ -..+++.|+.++.+.
T Consensus 390 y~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl 468 (611)
T KOG1173|consen 390 YMRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKL 468 (611)
T ss_pred HHHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHH
Confidence 777889999999998888732 446677777777777788899999998887732 1111 234688889999999
Q ss_pred CCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-hhHHHHHHHH
Q 002666 800 GNITEANGLFERFKENGGVP-DSACYNAMMEGLSNANRAMDAYTLFEETRRKGFNIHT-KTCVILLDAL 866 (895)
Q Consensus 800 g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~ 866 (895)
+.+++|+..+++.+. ..| +..++..++-.|...|+.+.|+..|.+.+.. .|+. .+.-.|..+.
T Consensus 469 ~~~~eAI~~~q~aL~--l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l--~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 469 NKYEEAIDYYQKALL--LSPKDASTHASIGYIYHLLGNLDKAIDHFHKALAL--KPDNIFISELLKLAI 533 (611)
T ss_pred hhHHHHHHHHHHHHH--cCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhc--CCccHHHHHHHHHHH
Confidence 999999999999988 555 7888999999999999999999999998877 4444 3333344333
No 45
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=2e-12 Score=126.74 Aligned_cols=293 Identities=15% Similarity=0.092 Sum_probs=166.5
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC--CChHhHHHHHHHHHhcCC
Q 002666 200 GALATVRESNLMLNLFHQMQELGYEVSVHLFTTLIRVFAREGRVDDALFLLDEMKNNAFS--VDIVLYNVCIDCFGKVGK 277 (895)
Q Consensus 200 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~ 277 (895)
.++......+++++-.+...+.|++.+...-+..+.+...+.++++|+.+|+++.+.++- .|..+|+.++-+--...+
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~sk 314 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSK 314 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHH
Confidence 444444556666666666666666665555555666666666666666666666665321 244455544322211111
Q ss_pred hh-hHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHH
Q 002666 278 VD-MAWKFFHEMKAQGVAPDDVTYTSMIGVLCKSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLFE 356 (895)
Q Consensus 278 ~~-~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 356 (895)
+. -|..+++ . ... -+.|+-++++-|.-.++.++|+.+|++.++.++. ...+|+.+++-|....+...|.+.++
T Consensus 315 Ls~LA~~v~~-i--dKy--R~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYR 388 (559)
T KOG1155|consen 315 LSYLAQNVSN-I--DKY--RPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYR 388 (559)
T ss_pred HHHHHHHHHH-h--ccC--CccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHH
Confidence 11 1111111 0 112 2345555566666666666666666666666654 55666666666666666666666666
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh
Q 002666 357 RLKQKGCIPSVIAYNSLLTCLGKKGRVTEAMKIFEAMKKDARPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEAGLFPNV 436 (895)
Q Consensus 357 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 436 (895)
.+++.+ +-|-.+|..|+++|.-.+...-|+-.|++...-.|.|...|.+|+.+|.+.++.++|++.|......|- .+.
T Consensus 389 rAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d-te~ 466 (559)
T KOG1155|consen 389 RAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD-TEG 466 (559)
T ss_pred HHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc-cch
Confidence 666654 235666666666666666666666666666666666666666666666666666666666666665442 234
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHhhhC----CC-CC-ChhhHHHHHHHHhhcCCHHHHHHHHHHHHhC
Q 002666 437 MTVNIMVDRLCKAQKLDEAFSIFEGMDHK----TC-TP-DAVTFCSLIDGLGKNGRVDDAYKFYEKMLDT 500 (895)
Q Consensus 437 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 500 (895)
..+..+.+.|-+.++.++|...|++.++. |. .| ...+..-|...+.+.+++++|..+......-
T Consensus 467 ~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 467 SALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG 536 (559)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC
Confidence 55666666666666666666666655442 11 11 1222333555566666666666655555443
No 46
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.67 E-value=1.7e-14 Score=148.15 Aligned_cols=288 Identities=14% Similarity=0.101 Sum_probs=218.6
Q ss_pred CChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC-C-cCHHHHHHHHHHHHhcCChhHHHH
Q 002666 171 KMLREAFDIIQTMRKFKFRPAFTAYTTLIGALATVRESNLMLNLFHQMQELGY-E-VSVHLFTTLIRVFAREGRVDDALF 248 (895)
Q Consensus 171 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~-~~~~~~~~l~~~~~~~g~~~~A~~ 248 (895)
=+.++|...|.++...-. -+..+...++.+|...++|++|..+|+.+.+... . -+.++|...+.-+ .+ +-++.
T Consensus 333 y~~~~A~~~~~klp~h~~-nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHL---q~-~v~Ls 407 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSHHY-NTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHL---QD-EVALS 407 (638)
T ss_pred HHHHHHHHHHHhhHHhcC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHH---Hh-hHHHH
Confidence 346788888888655532 2236667788888888888888888888877421 1 1345566555433 22 22333
Q ss_pred HHH-HHHhCCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHhhC
Q 002666 249 LLD-EMKNNAFSVDIVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGVAP-DDVTYTSMIGVLCKSKRLEEAVAMFEQMDRN 326 (895)
Q Consensus 249 ~~~-~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 326 (895)
++. .+.+.. +..+.+|.+++.+|.-+++.+.|++.|++.+.. .| ...+|+.+++-+.....+|.|...|+..+..
T Consensus 408 ~Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~ 484 (638)
T KOG1126|consen 408 YLAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV 484 (638)
T ss_pred HHHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC
Confidence 333 233332 556788889999999999999999999988875 44 6778888888888889999999999998887
Q ss_pred CCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHH
Q 002666 327 REVPCAYAYNTMIMGYGSVGKFDEAFSLFERLKQKGCIPSVIAYNSLLTCLGKKGRVTEAMKIFEAMKKDARPNNTTYNV 406 (895)
Q Consensus 327 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 406 (895)
++. +-.+|..++..|.++++++.|+-.|+++.+.++. +.+....++..+.+.|+.++|+++|+++....|.|+..-..
T Consensus 485 ~~r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~ 562 (638)
T KOG1126|consen 485 DPR-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYH 562 (638)
T ss_pred Cch-hhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHH
Confidence 665 6778888888999999999999999998887643 67777788888888999999999999988888888888888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCC
Q 002666 407 LIDMLCKAGNFEDALKFRDAMKEAGLFPNVMTVNIMVDRLCKAQKLDEAFSIFEGMDHKTCTP 469 (895)
Q Consensus 407 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 469 (895)
.+..+...+++++|+..++++++. ++.+...+..++..|.+.|+.+.|+.-|.-+.....++
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG 624 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence 888888889999999999998875 22345667778888888999999988888777664443
No 47
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.67 E-value=2.1e-14 Score=147.51 Aligned_cols=291 Identities=14% Similarity=0.094 Sum_probs=241.9
Q ss_pred ChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC--CCChHhHHHHHHHHHhcCChhhHHHH
Q 002666 207 ESNLMLNLFHQMQELGYEVSVHLFTTLIRVFAREGRVDDALFLLDEMKNNAF--SVDIVLYNVCIDCFGKVGKVDMAWKF 284 (895)
Q Consensus 207 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~ 284 (895)
+..+|...|....+. ...+..+...++++|...+++++|..+|+.+.+... ..+..+|...+.-+ .+.-+---+
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHL---q~~v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHL---QDEVALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHH---HhhHHHHHH
Confidence 557899999985554 445668889999999999999999999999987642 23566777765433 222222223
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Q 002666 285 FHEMKAQGVAPDDVTYTSMIGVLCKSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLFERLKQKGCI 364 (895)
Q Consensus 285 ~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 364 (895)
-+++++.. +-.+.+|-+++++|.-+++.+.|++.|++.++.++. ..++|+.++.-+.....+|.|...|...+.....
T Consensus 410 aq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r 487 (638)
T KOG1126|consen 410 AQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR 487 (638)
T ss_pred HHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch
Confidence 34444442 336789999999999999999999999999998865 8999999999999999999999999999986532
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 002666 365 PSVIAYNSLLTCLGKKGRVTEAMKIFEAMKKDARPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEAGLFPNVMTVNIMVD 444 (895)
Q Consensus 365 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 444 (895)
+-.+|..++..|.+.++++.|.-.|+++....|.+.+....+...+-+.|+.++|+.+++++...+. -|+..-...+.
T Consensus 488 -hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~-kn~l~~~~~~~ 565 (638)
T KOG1126|consen 488 -HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDP-KNPLCKYHRAS 565 (638)
T ss_pred -hhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCC-CCchhHHHHHH
Confidence 5668889999999999999999999999999999999999999999999999999999999987653 35555556777
Q ss_pred HHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcch
Q 002666 445 RLCKAQKLDEAFSIFEGMDHKTCTPDAVTFCSLIDGLGKNGRVDDAYKFYEKMLDTDQIPNA 506 (895)
Q Consensus 445 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 506 (895)
.+...+++++|+..++++.+. ++.+..++..++..|-+.|+.+.|+.-|.-+.+.++++..
T Consensus 566 il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 566 ILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred HHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 888899999999999999887 3446788999999999999999999999999998876554
No 48
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=3.3e-12 Score=128.64 Aligned_cols=504 Identities=11% Similarity=0.050 Sum_probs=248.0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 002666 227 VHLFTTLIRVFAREGRVDDALFLLDEMKNNAFSVDIVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGVAPDDVTYTSMIGV 306 (895)
Q Consensus 227 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~ 306 (895)
..-+..+.+-+..+.++..|..+-+++...+..|+. --.++.++.-.|.++.|..+...-.-. ..|..+......+
T Consensus 16 ~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~~dp~d--~~~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~~~~ 91 (611)
T KOG1173|consen 16 LEKYRRLVRDALMQHRYKTALFWADKVAGLTNDPAD--IYWLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLAAKC 91 (611)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHhccCChHH--HHHHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHHHHH
Confidence 344445555555666667777777766655433332 234666777777777776666544322 2355666666667
Q ss_pred HHhcCCHhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 002666 307 LCKSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLFERLKQKGCIPSVIAYNSLLTCLGKKGRVTEA 386 (895)
Q Consensus 307 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 386 (895)
+.+..++++|..++...... -+...|..--. ...-..+.+. +... .......+..-...|....+.++|
T Consensus 92 l~~lk~~~~al~vl~~~~~~---~~~f~yy~~~~--~~~l~~n~~~----~~~~--~~~essic~lRgk~y~al~n~~~a 160 (611)
T KOG1173|consen 92 LVKLKEWDQALLVLGRGHVE---TNPFSYYEKDA--ANTLELNSAG----EDLM--INLESSICYLRGKVYVALDNREEA 160 (611)
T ss_pred HHHHHHHHHHHHHhcccchh---hcchhhcchhh--hceeccCccc----cccc--ccchhceeeeeeehhhhhccHHHH
Confidence 77777777777776633100 01111100000 0000000000 0000 000111122222344455556666
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC----CCChhhHHHHHHHHHhcCChhHHHHHHHHh
Q 002666 387 MKIFEAMKKDARPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEAGL----FPNVMTVNIMVDRLCKAQKLDEAFSIFEGM 462 (895)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 462 (895)
...|.+.......+...+..++....-. +.+.++.+...+. .-+......+.....-...-++....-++.
T Consensus 161 r~~Y~~Al~~D~~c~Ea~~~lvs~~mlt-----~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~ 235 (611)
T KOG1173|consen 161 RDKYKEALLADAKCFEAFEKLVSAHMLT-----AQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDE 235 (611)
T ss_pred HHHHHHHHhcchhhHHHHHHHHHHHhcc-----hhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchh
Confidence 6666655544444444444444333221 1111111111100 001111111111110000000000000000
Q ss_pred hhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHh
Q 002666 463 DHKTCTPDAVTFCSLIDGLGKNGRVDDAYKFYEKMLDTDQIPNAILYTSLIRNFFKHGRKEDGHKIYKEMVQRGCSPDLM 542 (895)
Q Consensus 463 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 542 (895)
.-.+...+........+-+...+++.+..++.+...+.++ +....+..-|.++...|+..+-..+=.++++. .|..+.
T Consensus 236 sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dp-fh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~ 313 (611)
T KOG1173|consen 236 SLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDP-FHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKAL 313 (611)
T ss_pred hhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCC-CCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCc
Confidence 1112233455555556666667777777777777777654 34444444455666666666655555555554 344556
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 002666 543 LLNTYMDCVFKAGETEKGRALFEEIKAQGFVPDVQSYSILIHGLVKAGFAHETDQLFYAMKKQGCVLDTRAYNTVVDGFC 622 (895)
Q Consensus 543 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 622 (895)
+|-.+...|...|+..+|+..|.+....+. .=...|..+.+.|...|..+.|...+..+.+. ++....-+.-+.--|.
T Consensus 314 sW~aVg~YYl~i~k~seARry~SKat~lD~-~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~ 391 (611)
T KOG1173|consen 314 SWFAVGCYYLMIGKYSEARRYFSKATTLDP-TFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYM 391 (611)
T ss_pred chhhHHHHHHHhcCcHHHHHHHHHHhhcCc-cccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHH
Confidence 666666666666777777777766654421 12345666666676677777776666655543 1111122223344456
Q ss_pred ccCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHHc--CCC----cCHHHHHHHHHHHHccCC
Q 002666 623 KSGKVNKAYQLLEEMKTKGHYPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSK--GIE----LNTVIYSSLIDGFGKVGR 696 (895)
Q Consensus 623 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~----~~~~~~~~l~~~~~~~g~ 696 (895)
+.++.+.|.++|.+.....+ .|+...+-+.-.....+.+.+|..+|+..+.. ... .-..+++.|+.+|.+.+.
T Consensus 392 ~t~n~kLAe~Ff~~A~ai~P-~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~ 470 (611)
T KOG1173|consen 392 RTNNLKLAEKFFKQALAIAP-SDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNK 470 (611)
T ss_pred HhccHHHHHHHHHHHHhcCC-CcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhh
Confidence 66667777777766665422 24555555555555566666777666665521 000 112345666666666777
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 002666 697 IDEAYLIMEELMQKGLTPNAYTWNCLLDALVKAEEISEAFVCFQSMKDLKCTPNHVTYSIII 758 (895)
Q Consensus 697 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 758 (895)
+++|+..+++.+... +.+..++.+++..|...|+++.|++.|.+.+. +.|+..+-..++
T Consensus 471 ~~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL 529 (611)
T KOG1173|consen 471 YEEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELL 529 (611)
T ss_pred HHHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHH
Confidence 777777776666632 22666666666666666777777777766665 445554444333
No 49
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.65 E-value=3.6e-10 Score=116.13 Aligned_cols=457 Identities=12% Similarity=0.135 Sum_probs=303.5
Q ss_pred HHccCCcchHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCChhHH
Q 002666 132 MAVSKNFEPLEEILGEMSLAGIGPTNNTCIELVVSCVKSKMLREAFDIIQTMRKFKFRPAFTAYTTLIGALATVRESNLM 211 (895)
Q Consensus 132 l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 211 (895)
+...++|....+..+.++. +++....+....+-.+...|+.++|.+......+.. ..+..+|..++-.+...++|++|
T Consensus 17 ~yE~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~ea 94 (700)
T KOG1156|consen 17 CYETKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEA 94 (700)
T ss_pred HHHHHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHH
Confidence 4456778888888888777 466666777777777888899999998888776543 55678899999999999999999
Q ss_pred HHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHC
Q 002666 212 LNLFHQMQELGYEVSVHLFTTLIRVFAREGRVDDALFLLDEMKNNAFSVDIVLYNVCIDCFGKVGKVDMAWKFFHEMKAQ 291 (895)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 291 (895)
+.+|..+...+ +.+..++..+...-...|+++.....-.+.++.. +.....|...+.+.--.|++..|..++++..+.
T Consensus 95 iKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t 172 (700)
T KOG1156|consen 95 IKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKT 172 (700)
T ss_pred HHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999875 5688899999888889999999888888887763 334566778888888899999999999999876
Q ss_pred C-CCCCHHHHHHHH------HHHHhcCCHhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Q 002666 292 G-VAPDDVTYTSMI------GVLCKSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLFERLKQKGCI 364 (895)
Q Consensus 292 g-~~p~~~~~~~l~------~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 364 (895)
. -.|+...+.... ......|.+++|.+.+......-.. ....-..-...+.+.+++++|..++..++..+
T Consensus 173 ~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~D-kla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn-- 249 (700)
T KOG1156|consen 173 QNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVD-KLAFEETKADLLMKLGQLEEAVKVYRRLLERN-- 249 (700)
T ss_pred hccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHH-HHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC--
Confidence 3 246666554433 3445678888888887765543221 22333455677889999999999999999985
Q ss_pred CCHHHHH-HHHHHHHhcCCHHHHH-HHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHCCCCCChhhHHH
Q 002666 365 PSVIAYN-SLLTCLGKKGRVTEAM-KIFEAMKKDARPNNTTYNVLIDMLCKAGNFED-ALKFRDAMKEAGLFPNVMTVNI 441 (895)
Q Consensus 365 ~~~~~~~-~l~~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~~~~~~~~~~ 441 (895)
||...|. .+..++.+--+.-++. .+|....+..|..... ..+--......++.+ .-.++..+.+.|+++-.. .
T Consensus 250 Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p-~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~---d 325 (700)
T KOG1156|consen 250 PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECP-RRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFK---D 325 (700)
T ss_pred chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccc-hhccHHHhCcchhHHHHHHHHHHHhhcCCCchhh---h
Confidence 5655554 4445554444444455 6666554433322221 111111222233333 344667777888754322 2
Q ss_pred HHHHHHhcCChh----HHHHHHHHhhhCC----------CCCChh--hHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcc
Q 002666 442 MVDRLCKAQKLD----EAFSIFEGMDHKT----------CTPDAV--TFCSLIDGLGKNGRVDDAYKFYEKMLDTDQIPN 505 (895)
Q Consensus 442 l~~~~~~~g~~~----~A~~~~~~~~~~~----------~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 505 (895)
+...|-.....+ -+..+...+...| -+|... ++..++..+-+.|+++.|..+++.++++-| .-
T Consensus 326 l~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTP-Tl 404 (700)
T KOG1156|consen 326 LRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTP-TL 404 (700)
T ss_pred hHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCc-hH
Confidence 222222111111 0111111111111 134433 455678888899999999999999998743 24
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHH------
Q 002666 506 AILYTSLIRNFFKHGRKEDGHKIYKEMVQRGCSPDLMLLNTYMDCVFKAGETEKGRALFEEIKAQGFVPDVQSY------ 579 (895)
Q Consensus 506 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~------ 579 (895)
+..|..-++.+...|..++|..++++..+.+ .+|...-..-.....+.++.++|.++.....+.|. +....
T Consensus 405 iEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~--~~~~~L~~mqc 481 (700)
T KOG1156|consen 405 IELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF--GAVNNLAEMQC 481 (700)
T ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc--chhhhHHHhhh
Confidence 4556666788889999999999999998875 55655555666777888999999999988887764 22111
Q ss_pred --HHH--HHHHHhcCChHHHHHHHHHHH
Q 002666 580 --SIL--IHGLVKAGFAHETDQLFYAMK 603 (895)
Q Consensus 580 --~~l--~~~~~~~g~~~~A~~~~~~~~ 603 (895)
-.+ ..+|.+.|++..|.+-|..+.
T Consensus 482 mWf~~E~g~ay~r~~k~g~ALKkfh~i~ 509 (700)
T KOG1156|consen 482 MWFQLEDGEAYLRQNKLGLALKKFHEIE 509 (700)
T ss_pred HHHhHhhhHHHHHHHHHHHHHHHHhhHH
Confidence 111 234556666666655554443
No 50
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.65 E-value=4.5e-12 Score=133.88 Aligned_cols=176 Identities=11% Similarity=-0.004 Sum_probs=113.4
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHH
Q 002666 684 YSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNAYTWNCLLDALVKAEEISEAFVCFQSMKDLK--CTPNHVTYSIIINGL 761 (895)
Q Consensus 684 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~p~~~~~~~l~~~~ 761 (895)
-+.++..+++.-+..++...-+++...-+ +..|..|++-+......+.|.....+..... +.-+..-+..+.+.+
T Consensus 462 ~~ql~l~l~se~n~lK~l~~~ekye~~lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL 538 (1088)
T KOG4318|consen 462 ANQLHLTLNSEYNKLKILCDEEKYEDLLF---AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLL 538 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHH
Confidence 34555666666666666654444433211 1567788888888888888888888876422 223445577788888
Q ss_pred HhcCCHhHHHHHHHHHHHCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 002666 762 CRVRKFNKAFVFWQEMQKQGF-KP-NTITYTTMISGLAKAGNITEANGLFERFKENGGVPDSACYNAMMEGLSNANRAMD 839 (895)
Q Consensus 762 ~~~g~~~~A~~~~~~~~~~~~-~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 839 (895)
.+.+...++.++++++.+.-. .| ...+.-.+.+.....|+.+.-.++++-+...|+.-. .-+.....+.++...
T Consensus 539 ~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~et----gPl~~vhLrkdd~s~ 614 (1088)
T KOG4318|consen 539 QRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSET----GPLWMVHLRKDDQSA 614 (1088)
T ss_pred HHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhc----ccceEEEeeccchhh
Confidence 888888888888888876511 22 134555666667778888888888777776655431 234445566777777
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 002666 840 AYTLFEETRRKGFNIHTKTCVILLDALH 867 (895)
Q Consensus 840 A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 867 (895)
|++..+....+ +.+.+.....+..++.
T Consensus 615 a~ea~e~~~qk-yk~~P~~~e~lcrlv~ 641 (1088)
T KOG4318|consen 615 AQEAPEPEEQK-YKPYPKDLEGLCRLVY 641 (1088)
T ss_pred hhhcchHHHHH-hcCChHHHHHHHHHHH
Confidence 77777766555 4666665555555554
No 51
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.65 E-value=1.1e-15 Score=154.83 Aligned_cols=261 Identities=15% Similarity=0.135 Sum_probs=109.2
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHCC-CCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHcc
Q 002666 616 TVVDGFCKSGKVNKAYQLLEEMKTKG-HYPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNTVIYSSLIDGFGKV 694 (895)
Q Consensus 616 ~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 694 (895)
.+...+.+.|++++|++++.+..... ...+...|..+.......+++++|...++++...+ +.++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccc
Confidence 55777888889999999886655443 23344555666667777888999999999888765 2355666677766 678
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHhcCCHhHHHHH
Q 002666 695 GRIDEAYLIMEELMQKGLTPNAYTWNCLLDALVKAEEISEAFVCFQSMKDLK-CTPNHVTYSIIINGLCRVRKFNKAFVF 773 (895)
Q Consensus 695 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~ 773 (895)
+++++|.++++...+.. +++..+..++..+...++++++.++++++.... .+++...|..++..+.+.|+.++|++.
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 88999998888776632 466667778888888999999999998877532 245667777888888899999999999
Q ss_pred HHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 002666 774 WQEMQKQGFKPN-TITYTTMISGLAKAGNITEANGLFERFKENGGVPDSACYNAMMEGLSNANRAMDAYTLFEETRRKGF 852 (895)
Q Consensus 774 ~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 852 (895)
++++++. .|+ ......++..+...|+.+++.++++...+.. ..|+..+..++.++...|+.++|+.++++..+..
T Consensus 169 ~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~- 244 (280)
T PF13429_consen 169 YRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN- 244 (280)
T ss_dssp HHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-
T ss_pred HHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-
Confidence 9999874 454 6778888888888999999888888887742 3366778888999999999999999999988874
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002666 853 NIHTKTCVILLDALHKAECLEQAAIVGAVLRE 884 (895)
Q Consensus 853 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~l~~ 884 (895)
|.|+.....++.++...|+.++|.++..++..
T Consensus 245 p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 245 PDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp TT-HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccccccc
Confidence 77888888999999999999999887766544
No 52
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.64 E-value=9.6e-16 Score=155.21 Aligned_cols=262 Identities=14% Similarity=0.145 Sum_probs=100.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCC-CCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhc
Q 002666 162 ELVVSCVKSKMLREAFDIIQTMRKFK-FRPAFTAYTTLIGALATVRESNLMLNLFHQMQELGYEVSVHLFTTLIRVFARE 240 (895)
Q Consensus 162 ~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 240 (895)
.+...+.+.|++++|++++....... .+.+...|..+.......++++.|...|+++...+. .++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~-~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK-ANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccc-ccc
Confidence 44555666666666666664433222 233344455555566667777788888877776542 255566666666 677
Q ss_pred CChhHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHhHHHHH
Q 002666 241 GRVDDALFLLDEMKNNAFSVDIVLYNVCIDCFGKVGKVDMAWKFFHEMKAQG-VAPDDVTYTSMIGVLCKSKRLEEAVAM 319 (895)
Q Consensus 241 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g-~~p~~~~~~~l~~~~~~~g~~~~A~~~ 319 (895)
+++++|..++.+..+. .++...+..++..+.+.++++++..+++.+.... .+++...|..++..+.+.|+.++|++.
T Consensus 91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 8888888887776554 2445556667777778888888888888776542 244666777777888888888888888
Q ss_pred HHHHhhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC
Q 002666 320 FEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLFERLKQKGCIPSVIAYNSLLTCLGKKGRVTEAMKIFEAMKKDARP 399 (895)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 399 (895)
++++++..|. |......++..+...|+.+++..+++...+.. +.|...+..++.++...|+.++|+.+|++..+..|.
T Consensus 169 ~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~ 246 (280)
T PF13429_consen 169 YRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPD 246 (280)
T ss_dssp HHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccccc
Confidence 8888877765 67777778888888888888777777776653 345566777788888888888888888888777788
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002666 400 NNTTYNVLIDMLCKAGNFEDALKFRDAMKE 429 (895)
Q Consensus 400 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 429 (895)
|+.....++.++...|+.++|.++.+++..
T Consensus 247 d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 247 DPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp -HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccccc
Confidence 888888888888888888888877766543
No 53
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.64 E-value=1.5e-09 Score=116.22 Aligned_cols=203 Identities=14% Similarity=0.141 Sum_probs=124.6
Q ss_pred CHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHH
Q 002666 610 DTRAYNTVVDGFCKSGKVNKAYQLLEEMKTKGHYPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNTVIYSSLID 689 (895)
Q Consensus 610 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 689 (895)
.+..|..+..+-.+.|.+.+|++.|-+. .|+..|..+++...+.|.+++-..++..+.++.-+|... +.|+.
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~ 1174 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIF 1174 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHH
Confidence 3556777888877888888777766543 266677778888888888888888877777765444433 45777
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHhH
Q 002666 690 GFGKVGRIDEAYLIMEELMQKGLTPNAYTWNCLLDALVKAEEISEAFVCFQSMKDLKCTPNHVTYSIIINGLCRVRKFNK 769 (895)
Q Consensus 690 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 769 (895)
+|++.++..+-.+++ ..||......+++-|...|.++.|.-+|..+.+ |..|...+...|.|..
T Consensus 1175 AyAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN---------~a~La~TLV~LgeyQ~ 1238 (1666)
T KOG0985|consen 1175 AYAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSN---------FAKLASTLVYLGEYQG 1238 (1666)
T ss_pred HHHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhh---------HHHHHHHHHHHHHHHH
Confidence 787777776644433 236777777777777777777777777665443 5556666666666666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 002666 770 AFVFWQEMQKQGFKPNTITYTTMISGLAKAGNITEANGLFERFKENGGVPDSACYNAMMEGLSNANRAMDAYTLFEET 847 (895)
Q Consensus 770 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 847 (895)
|.+.-.++ .+..||..+..+|...+.+.-| ++....+.....-...|+.-|...|-++|-+.+++..
T Consensus 1239 AVD~aRKA------ns~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~ 1305 (1666)
T KOG0985|consen 1239 AVDAARKA------NSTKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAG 1305 (1666)
T ss_pred HHHHhhhc------cchhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhh
Confidence 66544332 2445565555555544444333 2222122224444555555566666666665555544
No 54
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.64 E-value=9.4e-12 Score=117.46 Aligned_cols=450 Identities=12% Similarity=0.084 Sum_probs=257.9
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhhH
Q 002666 202 LATVRESNLMLNLFHQMQELGYEVSVHLFTTLIRVFAREGRVDDALFLLDEMKNNAFSVDIVLYNVCIDCFGKVGKVDMA 281 (895)
Q Consensus 202 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 281 (895)
+...+++..|+.+++-....+-+-...+-..++.++.+.|++++|...+..+.+.. .++...+-.+.-++.-.|.+.+|
T Consensus 32 fls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA 110 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEA 110 (557)
T ss_pred HHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHH
Confidence 33455666666666655443322223444556667778888888888887776644 45555565666666677788887
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 002666 282 WKFFHEMKAQGVAPDDVTYTSMIGVLCKSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLFERLKQK 361 (895)
Q Consensus 282 ~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 361 (895)
..+-....+ ++..-..|.+.--+.++-++-..+.+.+.. ...--.+|.......-.+.+|++++.++...
T Consensus 111 ~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD-----~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d 180 (557)
T KOG3785|consen 111 KSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQD-----TLEDQLSLASVHYMRMHYQEAIDVYKRVLQD 180 (557)
T ss_pred HHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhh-----hHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 776654322 233334444555566666665555555443 2233344555555556678888888888876
Q ss_pred CCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHH
Q 002666 362 GCIPSVIAYN-SLLTCLGKKGRVTEAMKIFEAMKKDARPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEAGLFPNVMTVN 440 (895)
Q Consensus 362 ~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 440 (895)
+ |+-...+ .+.-+|.+..-++-+.+++....+..|+++.+.+..+....+.=+-..|..-..++.+.+-.. .
T Consensus 181 n--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~-----~ 253 (557)
T KOG3785|consen 181 N--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE-----Y 253 (557)
T ss_pred C--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc-----c
Confidence 4 3433333 345567788888888888888888888888888888877776544445555555555543111 1
Q ss_pred HHHHHHHhc-----CChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcchhhHHHHHHH
Q 002666 441 IMVDRLCKA-----QKLDEAFSIFEGMDHKTCTPDAVTFCSLIDGLGKNGRVDDAYKFYEKMLDTDQIPNAILYTSLIRN 515 (895)
Q Consensus 441 ~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 515 (895)
..+.-+++. ..-+.|++++-.+... -+.+-..++--|.+.+++.+|..+.+++.. .++.-|..-+..
T Consensus 254 ~f~~~l~rHNLVvFrngEgALqVLP~L~~~----IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P----ttP~EyilKgvv 325 (557)
T KOG3785|consen 254 PFIEYLCRHNLVVFRNGEGALQVLPSLMKH----IPEARLNLIIYYLNQNDVQEAISLCKDLDP----TTPYEYILKGVV 325 (557)
T ss_pred hhHHHHHHcCeEEEeCCccHHHhchHHHhh----ChHhhhhheeeecccccHHHHHHHHhhcCC----CChHHHHHHHHH
Confidence 233334443 3456777777655543 233445566678889999999888776532 233334333333
Q ss_pred HHhcCC-------HHHHHHHHHHHHHcCCCCC-HhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 002666 516 FFKHGR-------KEDGHKIYKEMVQRGCSPD-LMLLNTYMDCVFKAGETEKGRALFEEIKAQGFVPDVQSYSILIHGLV 587 (895)
Q Consensus 516 ~~~~~~-------~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 587 (895)
+...|+ ..-|...|+-.-+.+..-| ..--..+..+++-..++++.+..+..+..--...|...+ .+.++++
T Consensus 326 ~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~ 404 (557)
T KOG3785|consen 326 FAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKL 404 (557)
T ss_pred HHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHH
Confidence 444333 3334444444333332222 222334445555566677777777766655333333333 3667777
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHhHH-HHHHHHHccCChHHHHHHHHHHHHCCCCCCHH-hHHHHHHHHHccCCHHHH
Q 002666 588 KAGFAHETDQLFYAMKKQGCVLDTRAYN-TVVDGFCKSGKVNKAYQLLEEMKTKGHYPTVV-TYGSVIDGLAKIDRLDEA 665 (895)
Q Consensus 588 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~A 665 (895)
..|.+.+|+++|-.+....++ |..+|. .+.++|.+.++++.|.+++-++-. ..+.. ....+.+-|.+.+.+--|
T Consensus 405 atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyya 480 (557)
T KOG3785|consen 405 ATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYA 480 (557)
T ss_pred HhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777666544333 334443 445667777777777665544322 11222 223334455666666666
Q ss_pred HHHHHHHHHcCCCcCHHHH
Q 002666 666 YMLFEEAKSKGIELNTVIY 684 (895)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~ 684 (895)
.+.|+.+... .|++.-|
T Consensus 481 aKAFd~lE~l--DP~pEnW 497 (557)
T KOG3785|consen 481 AKAFDELEIL--DPTPENW 497 (557)
T ss_pred HHhhhHHHcc--CCCcccc
Confidence 6666666554 3444444
No 55
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.63 E-value=2.2e-10 Score=120.13 Aligned_cols=127 Identities=14% Similarity=0.118 Sum_probs=71.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHH
Q 002666 719 WNCLLDALVKAEEISEAFVCFQSMKDLKCTPNHVTYSIIINGLCRVRKFNKAFVFWQEMQKQGFKPN-TITYTTMISGLA 797 (895)
Q Consensus 719 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~ 797 (895)
|......+.+.++.++|...+.+..... +-....|...+..+...|..++|.+.|..... +.|+ ..+..++..++.
T Consensus 653 wllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~--ldP~hv~s~~Ala~~ll 729 (799)
T KOG4162|consen 653 WLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALA--LDPDHVPSMTALAELLL 729 (799)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh--cCCCCcHHHHHHHHHHH
Confidence 3334445555666666665555555422 22334455555555566666666666666554 4444 235555666666
Q ss_pred hcCCHHHHHH--HHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 002666 798 KAGNITEANG--LFERFKENGGVP-DSACYNAMMEGLSNANRAMDAYTLFEETRRK 850 (895)
Q Consensus 798 ~~g~~~~A~~--~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 850 (895)
+.|+..-|.. ++..+++ +.| ++..|..++..+.+.|+.++|-+.|....+.
T Consensus 730 e~G~~~la~~~~~L~dalr--~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 730 ELGSPRLAEKRSLLSDALR--LDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HhCCcchHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 6665555555 6666665 445 5666666666666666666666666655444
No 56
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.63 E-value=1.8e-12 Score=137.43 Aligned_cols=284 Identities=11% Similarity=0.084 Sum_probs=202.1
Q ss_pred hcCChhHHHHHHHHHHhCCCCCChHh-HHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHH--HHHHHHHhcCCHhH
Q 002666 239 REGRVDDALFLLDEMKNNAFSVDIVL-YNVCIDCFGKVGKVDMAWKFFHEMKAQGVAPDDVTYT--SMIGVLCKSKRLEE 315 (895)
Q Consensus 239 ~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~--~l~~~~~~~g~~~~ 315 (895)
..|+++.|.+.+....+.. ++... |........+.|+++.|.+.+.++.+. .|+..... .....+...|+++.
T Consensus 96 ~eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~ 171 (398)
T PRK10747 96 AEGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHA 171 (398)
T ss_pred hCCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHH
Confidence 3688888887777665542 22233 333344447888888888888888774 44543322 33567788888888
Q ss_pred HHHHHHHHhhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCH-------HHHHHHHHHHHhcCCHHHHHH
Q 002666 316 AVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLFERLKQKGCIPSV-------IAYNSLLTCLGKKGRVTEAMK 388 (895)
Q Consensus 316 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~ 388 (895)
|...++++.+..|. +..++..+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...+
T Consensus 172 Al~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~ 250 (398)
T PRK10747 172 ARHGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKR 250 (398)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 88888888888766 7778888888888888888888888888887644222 133334444444556677777
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhhhCCCC
Q 002666 389 IFEAMKKDARPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEAGLFPNVMTVNIMVDRLCKAQKLDEAFSIFEGMDHKTCT 468 (895)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 468 (895)
+++.+.+..+.++.....++..+...|+.++|.+.+++..+. .|+... .++.+.+..++.+++....+...+.. +
T Consensus 251 ~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~-P 325 (398)
T PRK10747 251 WWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQH-G 325 (398)
T ss_pred HHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhC-C
Confidence 777776667778888888888888888888888888888774 344422 22333445588888888888877663 3
Q ss_pred CChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002666 469 PDAVTFCSLIDGLGKNGRVDDAYKFYEKMLDTDQIPNAILYTSLIRNFFKHGRKEDGHKIYKEMVQ 534 (895)
Q Consensus 469 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 534 (895)
.|+..+..++..+.+.+++++|.+.|+.+++.. |+...+..+...+.+.|+.++|..++++.+.
T Consensus 326 ~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~--P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 326 DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQR--PDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 466677788888888888888888888888764 5667777788888888888888888877654
No 57
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.61 E-value=2.2e-12 Score=137.60 Aligned_cols=289 Identities=11% Similarity=0.051 Sum_probs=176.8
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCC-hHhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHH
Q 002666 238 AREGRVDDALFLLDEMKNNAFSVD-IVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGVAPDDVTYTSMIGVLCKSKRLEEA 316 (895)
Q Consensus 238 ~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A 316 (895)
...|+++.|.+.+.+..+.. |+ ...+-.......+.|+++.|.+++.++.+....+...........+...|+++.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 46788888888887776653 33 3334455666777788888888888877653222222333456777778888888
Q ss_pred HHHHHHHhhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHH----HHHHHHHhcCCHHHHHHHHHH
Q 002666 317 VAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLFERLKQKGCIPSVIAYN----SLLTCLGKKGRVTEAMKIFEA 392 (895)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~~~~A~~~~~~ 392 (895)
...++.+.+..|. +..++..++..+...|++++|.+.+..+.+.+.. +...+. .........+..+++.+.+..
T Consensus 173 l~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~ 250 (409)
T TIGR00540 173 RHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLN 250 (409)
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 8888888887765 6677778888888888888888888888877643 222221 111111222233333334444
Q ss_pred HhcCC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhH---HHHHHHHHhcCChhHHHHHHHHhhhC
Q 002666 393 MKKDA----RPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEAGLFPNVMTV---NIMVDRLCKAQKLDEAFSIFEGMDHK 465 (895)
Q Consensus 393 ~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~ 465 (895)
+.... +.++..+..++..+...|+.++|.+.+++..+.. ||.... ..........++.+.+.+.+++..+.
T Consensus 251 ~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~ 328 (409)
T TIGR00540 251 WWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN 328 (409)
T ss_pred HHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh
Confidence 43333 3577788888888888888888888888887753 343311 11111223345566666666666554
Q ss_pred CCCCCh--hhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002666 466 TCTPDA--VTFCSLIDGLGKNGRVDDAYKFYEKMLDTDQIPNAILYTSLIRNFFKHGRKEDGHKIYKEMV 533 (895)
Q Consensus 466 ~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 533 (895)
. +.|+ ....+++..+.+.|++++|.+.|+........|+...+..++..+.+.|+.++|.+++++.+
T Consensus 329 ~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 329 V-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred C-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 2 2234 45556677777777777777777743222223555556666777777777777766666543
No 58
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.61 E-value=2.4e-12 Score=137.36 Aligned_cols=293 Identities=13% Similarity=0.038 Sum_probs=176.1
Q ss_pred HhcCCHhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 002666 308 CKSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLFERLKQKGCIPSVIAYNSLLTCLGKKGRVTEAM 387 (895)
Q Consensus 308 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 387 (895)
...|+++.|.+.+.+..+..+. ....+-....++...|+++.|.+++.++.+....+...........+...|+++.|.
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~-~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAE-PVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 4577888888777777665443 234444556667777888888888887766542222234444577777888888888
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHH-H---HHHHHHhcCChhHHHHHHHHhh
Q 002666 388 KIFEAMKKDARPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEAGLFPNVMTVN-I---MVDRLCKAQKLDEAFSIFEGMD 463 (895)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~---l~~~~~~~g~~~~A~~~~~~~~ 463 (895)
..++.+.+..|.++.++..+...+...|++++|.+.+..+.+.+.. +...+. . ....+...+..+++.+.+..+.
T Consensus 174 ~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~ 252 (409)
T TIGR00540 174 HGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNWW 252 (409)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 8888888878888888888888888888888888888888877543 222221 1 1111122222232333444333
Q ss_pred hCCC---CCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcchhhH-HHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 002666 464 HKTC---TPDAVTFCSLIDGLGKNGRVDDAYKFYEKMLDTDQIPNAILY-TSLIRNFFKHGRKEDGHKIYKEMVQRGCSP 539 (895)
Q Consensus 464 ~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 539 (895)
.... +.+...+..++..+...|+.++|.+.+++.++..+......+ ..........++.+.+.+.++...+.. +.
T Consensus 253 ~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~-p~ 331 (409)
T TIGR00540 253 KNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV-DD 331 (409)
T ss_pred HHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC-CC
Confidence 3311 136677777778888888888888888888876543221111 111112233455666666666666541 22
Q ss_pred CH--hhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 002666 540 DL--MLLNTYMDCVFKAGETEKGRALFEEIKAQGFVPDVQSYSILIHGLVKAGFAHETDQLFYAMK 603 (895)
Q Consensus 540 ~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 603 (895)
|. ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++..
T Consensus 332 ~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 332 KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33 44555666666666666666666643322224566656666666666666666666666543
No 59
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.61 E-value=5.1e-12 Score=133.91 Aligned_cols=283 Identities=13% Similarity=0.090 Sum_probs=169.4
Q ss_pred cCCHhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHH--HHHHHHHHhcCCHHHHH
Q 002666 310 SKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLFERLKQKGCIPSVIAY--NSLLTCLGKKGRVTEAM 387 (895)
Q Consensus 310 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~A~ 387 (895)
.|+++.|.+.+....+....| ...|........+.|+++.|..++.++.+.. |+.... ......+...|+++.|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~--~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAELA--DNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHCCCHHHHH
Confidence 577777776666654432211 2223233344467777777777777776643 333222 23356677777888888
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChh-------hHHHHHHHHHhcCChhHHHHHHH
Q 002666 388 KIFEAMKKDARPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEAGLFPNVM-------TVNIMVDRLCKAQKLDEAFSIFE 460 (895)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~g~~~~A~~~~~ 460 (895)
..++.+.+..|.++.+...+...|.+.|++++|.+++..+.+.+..++.. .|..++.......+.+...++++
T Consensus 174 ~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 174 HGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 88877777777777788888888888888888888888877765432221 12222222233334445555555
Q ss_pred HhhhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 002666 461 GMDHKTCTPDAVTFCSLIDGLGKNGRVDDAYKFYEKMLDTDQIPNAILYTSLIRNFFKHGRKEDGHKIYKEMVQRGCSPD 540 (895)
Q Consensus 461 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 540 (895)
.+... .+.++.....++..+...|+.++|...+++..+.. ++... .++.+....++.+++++..+...+.. +.|
T Consensus 254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~--~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~-P~~ 327 (398)
T PRK10747 254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQ--YDERL--VLLIPRLKTNNPEQLEKVLRQQIKQH-GDT 327 (398)
T ss_pred hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCHHH--HHHHhhccCCChHHHHHHHHHHHhhC-CCC
Confidence 54433 23356666777777777777777777777776642 23321 12233334466777777777666652 334
Q ss_pred HhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 002666 541 LMLLNTYMDCVFKAGETEKGRALFEEIKAQGFVPDVQSYSILIHGLVKAGFAHETDQLFYAMK 603 (895)
Q Consensus 541 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 603 (895)
......+...+...+++++|.+.|+.+.+. .|+...+..+...+.+.|+.++|..++++..
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 445556666666666666666666666655 4666666666666666666666666666554
No 60
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.61 E-value=1.5e-08 Score=104.02 Aligned_cols=624 Identities=12% Similarity=0.124 Sum_probs=372.7
Q ss_pred CcCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHhHHHH
Q 002666 189 RPAFTAYTTLIGALATVRESNLMLNLFHQMQELGYEVSVHLFTTLIRVFAREGRVDDALFLLDEMKNNAFSVDIVLYNVC 268 (895)
Q Consensus 189 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 268 (895)
+.++.+|...|..-.. .-......+|+++.+. ++.+-..|...++.-. ..-.+..|....|-.+
T Consensus 24 p~svk~W~RYIe~k~~-sp~k~~~~lYERal~~-lp~sykiW~~YL~~R~--------------~~vk~~~~T~~~~~~v 87 (835)
T KOG2047|consen 24 PFSVKCWLRYIEHKAG-SPDKQRNLLYERALKE-LPGSYKIWYDYLKARR--------------AQVKHLCPTDPAYESV 87 (835)
T ss_pred chhHHHHHHHHHHHcc-CChHHHHHHHHHHHHH-CCCchHHHHHHHHHHH--------------HHhhccCCCChHHHHH
Confidence 4456666666654322 2233455677777765 4556666666553211 0111223444444443
Q ss_pred HHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCC-CCHHhHHHHHHHHHccCC
Q 002666 269 IDCFGKVGKVDMAWKFFHEMKAQGVAPDDVTYTSMIGVLCKSKRLEEAVAMFEQMDRNREV-PCAYAYNTMIMGYGSVGK 347 (895)
Q Consensus 269 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~ 347 (895)
-+++ +.++- .|.+ -+..|...+..+.++|+...-...|+..+..-+. .....|...+......|-
T Consensus 88 n~c~------er~lv---~mHk-----mpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~l 153 (835)
T KOG2047|consen 88 NNCF------ERCLV---FMHK-----MPRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGL 153 (835)
T ss_pred HHHH------HHHHH---HHhc-----CCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCC
Confidence 3333 22222 2222 2355666677777888888888888877654322 233466666777777777
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc-------CCCCCHHHHHHHHHHHHhcCCHHHH
Q 002666 348 FDEAFSLFERLKQKGCIPSVIAYNSLLTCLGKKGRVTEAMKIFEAMKK-------DARPNNTTYNVLIDMLCKAGNFEDA 420 (895)
Q Consensus 348 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~A 420 (895)
++-+..++++.++. ++..-...+..+++.+++++|.+.+..+.. ..+.+...|..+-....++-+.-..
T Consensus 154 Pets~rvyrRYLk~----~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~s 229 (835)
T KOG2047|consen 154 PETSIRVYRRYLKV----APEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQS 229 (835)
T ss_pred hHHHHHHHHHHHhc----CHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcc
Confidence 88888888888875 333466677778888888888888877643 2455666777777766665443322
Q ss_pred H---HHHHHHHHCCCCCCh--hhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHH
Q 002666 421 L---KFRDAMKEAGLFPNV--MTVNIMVDRLCKAQKLDEAFSIFEGMDHKTCTPDAVTFCSLIDGLGKNGRVDDAYKFYE 495 (895)
Q Consensus 421 ~---~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 495 (895)
+ ++++.+... .+|. ..|.+|.+.|.+.|.+++|.+++++....- ....-|..+.+.|..-....-+..+=
T Consensus 230 lnvdaiiR~gi~r--ftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me- 304 (835)
T KOG2047|consen 230 LNVDAIIRGGIRR--FTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKME- 304 (835)
T ss_pred cCHHHHHHhhccc--CcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHh-
Confidence 2 233333322 2332 467888888888888888888888877652 23344555555554332211111111
Q ss_pred HHHhCCC-CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----------CCCCHhhHHHHHHHHHHcCChhHHHHH
Q 002666 496 KMLDTDQ-IPNAILYTSLIRNFFKHGRKEDGHKIYKEMVQRG-----------CSPDLMLLNTYMDCVFKAGETEKGRAL 563 (895)
Q Consensus 496 ~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----------~~~~~~~~~~l~~~~~~~~~~~~a~~~ 563 (895)
-..+.+. ..+.. +++-...-|+.+.... -+.+...|..-+ -+..|+..+-...
T Consensus 305 ~a~~~~~n~ed~~-------------dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV--~l~e~~~~~~i~t 369 (835)
T KOG2047|consen 305 LADEESGNEEDDV-------------DLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRV--KLYEGNAAEQINT 369 (835)
T ss_pred hhhhcccChhhhh-------------hHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhh--hhhcCChHHHHHH
Confidence 0000110 00111 1111112222222210 122333333322 3446777788888
Q ss_pred HHHHHHCCCCCC------HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC---HHhHHHHHHHHHccCChHHHHHHH
Q 002666 564 FEEIKAQGFVPD------VQSYSILIHGLVKAGFAHETDQLFYAMKKQGCVLD---TRAYNTVVDGFCKSGKVNKAYQLL 634 (895)
Q Consensus 564 ~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~ 634 (895)
+.++... +.|. ...|..+...|-..|+.+.|..+|++..+...+.- ..+|......-.+..+++.|++++
T Consensus 370 yteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm 448 (835)
T KOG2047|consen 370 YTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLM 448 (835)
T ss_pred HHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 8887764 2222 34678889999999999999999999988654322 456666677777888999999999
Q ss_pred HHHHHCCCCC-----------------CHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCH
Q 002666 635 EEMKTKGHYP-----------------TVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNTVIYSSLIDGFGKVGRI 697 (895)
Q Consensus 635 ~~~~~~~~~p-----------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 697 (895)
+......-.| +...|...++.....|-++....+++++++.-+. ++.+....+..+....-+
T Consensus 449 ~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yf 527 (835)
T KOG2047|consen 449 RRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYF 527 (835)
T ss_pred HhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHH
Confidence 8876431111 1234455556666778888899999999887543 444433444455566678
Q ss_pred HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHh---cCCHHHHHHHHHHHHhcCCCCCHHH--HHHHHHHHHhcCCHhHHH
Q 002666 698 DEAYLIMEELMQKGLTPN-AYTWNCLLDALVK---AEEISEAFVCFQSMKDLKCTPNHVT--YSIIINGLCRVRKFNKAF 771 (895)
Q Consensus 698 ~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~p~~~~--~~~l~~~~~~~g~~~~A~ 771 (895)
+++.++|++-+..-..|+ ...|+..+.-+.+ ...++.|..+|++.++ +++|...- |......-.+.|....|+
T Consensus 528 eesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~am 606 (835)
T KOG2047|consen 528 EESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAM 606 (835)
T ss_pred HHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 999999988766433344 3467766655544 3468999999999999 77775532 223333344568889999
Q ss_pred HHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHH
Q 002666 772 VFWQEMQKQGFKPN--TITYTTMISGLAKAGNITEANGLFERFKENGGVPDSAC---YNAMMEGLSNANRAMDAYTLFEE 846 (895)
Q Consensus 772 ~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~~ 846 (895)
++++++... +++. ...|+..|.-....=-+.....+|+++++ .-|+... ....+..-.+.|..+.|+.+|.-
T Consensus 607 siyerat~~-v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe--~Lp~~~~r~mclrFAdlEtklGEidRARaIya~ 683 (835)
T KOG2047|consen 607 SIYERATSA-VKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIE--SLPDSKAREMCLRFADLETKLGEIDRARAIYAH 683 (835)
T ss_pred HHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHH--hCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHh
Confidence 999998764 4444 34677777654444445667789999998 5676543 34556667889999999999887
Q ss_pred HHHCCCCC--CHhhHHHHHHHHHhcCCHH
Q 002666 847 TRRKGFNI--HTKTCVILLDALHKAECLE 873 (895)
Q Consensus 847 ~~~~~~~~--~~~~~~~l~~~~~~~g~~~ 873 (895)
..+. ++| +...|...=.-=.+-|+-+
T Consensus 684 ~sq~-~dPr~~~~fW~twk~FEvrHGned 711 (835)
T KOG2047|consen 684 GSQI-CDPRVTTEFWDTWKEFEVRHGNED 711 (835)
T ss_pred hhhc-CCCcCChHHHHHHHHHHHhcCCHH
Confidence 6555 333 3333434433345667733
No 61
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.61 E-value=3.3e-12 Score=119.36 Aligned_cols=270 Identities=14% Similarity=0.136 Sum_probs=172.7
Q ss_pred hcCCHhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCC------HHHHHHHHHHHHhcCC
Q 002666 309 KSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLFERLKQKGCIPS------VIAYNSLLTCLGKKGR 382 (895)
Q Consensus 309 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~ 382 (895)
-..+.++|+++|-+|.+.++. +..+..+|++.|-+.|..|.|+++...+.+. || ..+...|..-|...|-
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d~~-t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl 122 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQEDPE-TFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGL 122 (389)
T ss_pred hhcCcchHHHHHHHHHhcCch-hhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhh
Confidence 345667777777777776554 5666667777777777777777777776664 33 2244566677777788
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh----hhHHHHHHHHHhcCChhHHHHH
Q 002666 383 VTEAMKIFEAMKKDARPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEAGLFPNV----MTVNIMVDRLCKAQKLDEAFSI 458 (895)
Q Consensus 383 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~ 458 (895)
++.|+++|..+......-..+...|+..|-...+|++|++.-+++.+.+-.+.. ..|.-+...+....+.+.|..+
T Consensus 123 ~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~ 202 (389)
T COG2956 123 LDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAREL 202 (389)
T ss_pred hhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 888888888777666666677788888888888888888888888776533322 1233344444455677777777
Q ss_pred HHHhhhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 002666 459 FEGMDHKTCTPDAVTFCSLIDGLGKNGRVDDAYKFYEKMLDTDQIPNAILYTSLIRNFFKHGRKEDGHKIYKEMVQRGCS 538 (895)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 538 (895)
+.+..+.+.+ .+.+-..+++.....|++..|++.++.+.+.++.--..+...|..+|.+.|+.++....+..+.+. .
T Consensus 203 l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~--~ 279 (389)
T COG2956 203 LKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET--N 279 (389)
T ss_pred HHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--c
Confidence 7777666422 444455667777777777777777777777766555666677777777777777777777777665 2
Q ss_pred CCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 002666 539 PDLMLLNTYMDCVFKAGETEKGRALFEEIKAQGFVPDVQSYSILIHGLV 587 (895)
Q Consensus 539 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 587 (895)
+.......+........-.+.|...+.+-+.. .|+...+..++..-.
T Consensus 280 ~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l 326 (389)
T COG2956 280 TGADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHL 326 (389)
T ss_pred CCccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhh
Confidence 33333333333333334444444444443333 456666666555433
No 62
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.61 E-value=1.8e-10 Score=123.54 Aligned_cols=576 Identities=13% Similarity=0.045 Sum_probs=322.8
Q ss_pred CChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCCHHHHHHHH
Q 002666 276 GKVDMAWKFFHEMKAQGVAPDDVTYTSMIGVLCKSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLF 355 (895)
Q Consensus 276 g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 355 (895)
.+...|...|-+..+.... -...|..|+..|+..-+...|.+.|++.-+.+.. +..+.......|....+++.|..+.
T Consensus 472 K~~~~al~ali~alrld~~-~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDat-daeaaaa~adtyae~~~we~a~~I~ 549 (1238)
T KOG1127|consen 472 KNSALALHALIRALRLDVS-LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDAT-DAEAAAASADTYAEESTWEEAFEIC 549 (1238)
T ss_pred hhHHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhhhHHHHHHHhhccccHHHHHHHH
Confidence 4477777777777765322 3458999999999888999999999999988776 8889999999999999999999985
Q ss_pred HHHHhcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 002666 356 ERLKQKGCI-PSVIAYNSLLTCLGKKGRVTEAMKIFEAMKKDARPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEAGLFP 434 (895)
Q Consensus 356 ~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 434 (895)
-...+.... .-...|....-.|.+.++...|+..|+...+..|.|...|..++.+|...|.+..|.++|.+.... .|
T Consensus 550 l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP 627 (1238)
T KOG1127|consen 550 LRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RP 627 (1238)
T ss_pred HHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--Cc
Confidence 544443211 112233345556778899999999999999999999999999999999999999999999998874 34
Q ss_pred Chh-hHHHHHHHHHhcCChhHHHHHHHHhhhCC------CCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHh-------C
Q 002666 435 NVM-TVNIMVDRLCKAQKLDEAFSIFEGMDHKT------CTPDAVTFCSLIDGLGKNGRVDDAYKFYEKMLD-------T 500 (895)
Q Consensus 435 ~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~ 500 (895)
+.. .-.......|..|.+.+|...+..+.... ...-..++..+...+...|-...|..++++.++ .
T Consensus 628 ~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h 707 (1238)
T KOG1127|consen 628 LSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIH 707 (1238)
T ss_pred HhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 432 22223345678899999999988776531 111123333333334444444455555554433 2
Q ss_pred CCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCh---h---HHHHHHHHHHHCCCCC
Q 002666 501 DQIPNAILYTSLIRNFFKHGRKEDGHKIYKEMVQRGCSPDLMLLNTYMDCVFKAGET---E---KGRALFEEIKAQGFVP 574 (895)
Q Consensus 501 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~---~a~~~~~~~~~~~~~~ 574 (895)
....+...|..+.. |..+|-+.. .+ .|+......+..-.-..+.. + -+.+.+-.-.+ +..
T Consensus 708 ~~~~~~~~Wi~asd----------ac~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~~ 773 (1238)
T KOG1127|consen 708 SLQSDRLQWIVASD----------ACYIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LAI 773 (1238)
T ss_pred hhhhhHHHHHHHhH----------HHHHHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--Hhh
Confidence 21122222222222 122222211 00 11111111111101111111 1 01111111111 111
Q ss_pred CHHHHHHHHHHHHh----cC----ChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCH
Q 002666 575 DVQSYSILIHGLVK----AG----FAHETDQLFYAMKKQGCVLDTRAYNTVVDGFCKSGKVNKAYQLLEEMKTKGHYPTV 646 (895)
Q Consensus 575 ~~~~~~~l~~~~~~----~g----~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 646 (895)
+..+|..|+..|.+ .+ +...|...+.+.++.. ..+...|+.|.-. ...|++.-|...|-+-....+. ..
T Consensus 774 ~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~-~~ 850 (1238)
T KOG1127|consen 774 HMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPT-CH 850 (1238)
T ss_pred ccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhcccc-ch
Confidence 23334444433332 11 2235666666666542 3456667766655 5557777777777666554322 55
Q ss_pred HhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHH--HH--CCCCCCHHHHHHH
Q 002666 647 VTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNTVIYSSLIDGFGKVGRIDEAYLIMEEL--MQ--KGLTPNAYTWNCL 722 (895)
Q Consensus 647 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~--~~~~p~~~~~~~l 722 (895)
.+|..+.-.+.+..+++-|...|....... +.+...|..........|+.-++..+|..- .. .|--++..-|...
T Consensus 851 ~~W~NlgvL~l~n~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~ 929 (1238)
T KOG1127|consen 851 CQWLNLGVLVLENQDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCA 929 (1238)
T ss_pred hheeccceeEEecccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHH
Confidence 567666667777888888888888777664 445666665555566677777777776652 22 2333344444444
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh---------cCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHC-CCCCCHHHHH--
Q 002666 723 LDALVKAEEISEAFVCFQSMKD---------LKCTPNHVTYSIIINGLCRVRKFNKAFVFWQEMQKQ-GFKPNTITYT-- 790 (895)
Q Consensus 723 ~~~~~~~g~~~~A~~~~~~~~~---------~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~-- 790 (895)
.......|+.++-+...+++.. .+.+.....|.+.+....+.+.+.+|.+...+.... ..+-+...|+
T Consensus 930 te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynva 1009 (1238)
T KOG1127|consen 930 TEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVA 1009 (1238)
T ss_pred HHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 4445556665554444433321 134445567777777777777777777666665422 1122333333
Q ss_pred --HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-C-HhhHHHHHHHH
Q 002666 791 --TMISGLAKAGNITEANGLFERFKENGGVPDSACYNAMMEGLSNANRAMDAYTLFEETRRKGFNI-H-TKTCVILLDAL 866 (895)
Q Consensus 791 --~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~-~~~~~~l~~~~ 866 (895)
.+.+.++..|.++.|...+..... ..+..+...- -+.+-.|+++++.+.|++++.---.. + ......++.+.
T Consensus 1010 k~~~gRL~lslgefe~A~~a~~~~~~---evdEdi~gt~-l~lFfkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~ 1085 (1238)
T KOG1127|consen 1010 KPDAGRLELSLGEFESAKKASWKEWM---EVDEDIRGTD-LTLFFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCM 1085 (1238)
T ss_pred hhhhhhhhhhhcchhhHhhhhcccch---hHHHHHhhhh-HHHHHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHH
Confidence 334445555666655433322211 0011111111 11233467777777777766542111 1 12223455555
Q ss_pred HhcCCHHHHHH
Q 002666 867 HKAECLEQAAI 877 (895)
Q Consensus 867 ~~~g~~~~A~~ 877 (895)
...+..+.|..
T Consensus 1086 g~~~~k~~A~~ 1096 (1238)
T KOG1127|consen 1086 GLARQKNDAQF 1096 (1238)
T ss_pred hhcccchHHHH
Confidence 55666666654
No 63
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.60 E-value=4.5e-10 Score=120.57 Aligned_cols=601 Identities=12% Similarity=0.031 Sum_probs=302.7
Q ss_pred hhHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHH
Q 002666 243 VDDALFLLDEMKNNAFSVDIVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGVAPDDVTYTSMIGVLCKSKRLEEAVAMFEQ 322 (895)
Q Consensus 243 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 322 (895)
...|+..|-+..+.. ..-...|..|+..|+..-+...|.+.|....+.+.. +...+......|....+++.|..+.-.
T Consensus 474 ~~~al~ali~alrld-~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDat-daeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 474 SALALHALIRALRLD-VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDAT-DAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred HHHHHHHHHHHHhcc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 556666666555543 222345666777776666667777777777665322 445666677777777777777766333
Q ss_pred HhhCCCC-CCHHhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCH
Q 002666 323 MDRNREV-PCAYAYNTMIMGYGSVGKFDEAFSLFERLKQKGCIPSVIAYNSLLTCLGKKGRVTEAMKIFEAMKKDARPNN 401 (895)
Q Consensus 323 ~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 401 (895)
..+..+. .-...|...+-.|...++...|..-|+......+. |...|..++.+|...|++..|.++|.++....|.+.
T Consensus 552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~ 630 (1238)
T KOG1127|consen 552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSK 630 (1238)
T ss_pred HhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhH
Confidence 3222211 11223334555566777777777777777766533 666777777777777777777777777776667777
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCCChhhHHHHHHHHHhcCChhHHHHHHHHhhh-------CCCC
Q 002666 402 TTYNVLIDMLCKAGNFEDALKFRDAMKEA------GLFPNVMTVNIMVDRLCKAQKLDEAFSIFEGMDH-------KTCT 468 (895)
Q Consensus 402 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~~ 468 (895)
..-.......+..|++.+|+..+...... +...-..++-.+...+.-.|-...|.+.+++.++ ....
T Consensus 631 y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~ 710 (1238)
T KOG1127|consen 631 YGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQ 710 (1238)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhh
Confidence 66666777777777777777766655432 0001112222222223333333334444333222 1111
Q ss_pred CChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHhcCCH---H---HHHHHHHHHHHcCCCCCHh
Q 002666 469 PDAVTFCSLIDGLGKNGRVDDAYKFYEKMLDTDQIPNAILYTSLIRNFFKHGRK---E---DGHKIYKEMVQRGCSPDLM 542 (895)
Q Consensus 469 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~---~A~~~~~~~~~~~~~~~~~ 542 (895)
.+...|..+.++ ..+|-... .+ .|+......+..-.-+.+.. + -+.+.+-.-++. ..+..
T Consensus 711 ~~~~~Wi~asda----------c~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl--~~~~~ 776 (1238)
T KOG1127|consen 711 SDRLQWIVASDA----------CYIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSL--AIHMY 776 (1238)
T ss_pred hhHHHHHHHhHH----------HHHHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHH--hhccc
Confidence 122222222222 11121111 00 11221111111111111111 0 011111111111 11122
Q ss_pred hHHHHHHHHHH----c----CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhH
Q 002666 543 LLNTYMDCVFK----A----GETEKGRALFEEIKAQGFVPDVQSYSILIHGLVKAGFAHETDQLFYAMKKQGCVLDTRAY 614 (895)
Q Consensus 543 ~~~~l~~~~~~----~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 614 (895)
.|..++..|.+ . .+...|+..+.+.+... ..+..+|+.|.-. ...|.+.-|...|-+..... +....+|
T Consensus 777 ~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W 853 (1238)
T KOG1127|consen 777 PWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQW 853 (1238)
T ss_pred hHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhhe
Confidence 33333322222 1 12235566666655542 2255566655544 44566666666665554442 4456677
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHH----cCCCcCHHHHHHHHHH
Q 002666 615 NTVVDGFCKSGKVNKAYQLLEEMKTKGHYPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKS----KGIELNTVIYSSLIDG 690 (895)
Q Consensus 615 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~~~~~l~~~ 690 (895)
..+...+.+..+++.|...|.......+. +...|..........|+.-++..+|..--. .|-.++...|.+....
T Consensus 854 ~NlgvL~l~n~d~E~A~~af~~~qSLdP~-nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~ 932 (1238)
T KOG1127|consen 854 LNLGVLVLENQDFEHAEPAFSSVQSLDPL-NLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEI 932 (1238)
T ss_pred eccceeEEecccHHHhhHHHHhhhhcCch-hhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHH
Confidence 77777777778888888888777765332 444454444444456666666666655221 1222333333333334
Q ss_pred HHccCCHHHHHHHHHHHHH---------CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCCCHHHHH----H
Q 002666 691 FGKVGRIDEAYLIMEELMQ---------KGLTPNAYTWNCLLDALVKAEEISEAFVCFQSMKDL-KCTPNHVTYS----I 756 (895)
Q Consensus 691 ~~~~g~~~~A~~~~~~~~~---------~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~----~ 756 (895)
....|++++-+...+++-. .+.+.+..+|...+....+.+.++.|.++..+.+.. ...-+..+|+ .
T Consensus 933 h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~ 1012 (1238)
T KOG1127|consen 933 HLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPD 1012 (1238)
T ss_pred HHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Confidence 4455555554443333211 133346677777777777777777777777665420 1122333444 2
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---C-HHHHHHHHHHHH
Q 002666 757 IINGLCRVRKFNKAFVFWQEMQKQGFKPNTITYTTMISGLAKAGNITEANGLFERFKENGGVP---D-SACYNAMMEGLS 832 (895)
Q Consensus 757 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p---~-~~~~~~l~~~~~ 832 (895)
....++..|.++.|..-+..... ..+..+-..-+. ..-.|+++++.+.|++++. +.. + ......++....
T Consensus 1013 ~gRL~lslgefe~A~~a~~~~~~---evdEdi~gt~l~-lFfkndf~~sl~~fe~aLs--is~se~d~vvLl~kva~~~g 1086 (1238)
T KOG1127|consen 1013 AGRLELSLGEFESAKKASWKEWM---EVDEDIRGTDLT-LFFKNDFFSSLEFFEQALS--ISNSESDKVVLLCKVAVCMG 1086 (1238)
T ss_pred hhhhhhhhcchhhHhhhhcccch---hHHHHHhhhhHH-HHHHhHHHHHHHHHHHHhh--hcccccchhhhhHHHHHHHh
Confidence 34455666677665544332221 111111111111 1345778888888888776 322 2 233445555666
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC
Q 002666 833 NANRAMDAYTLFEETRRKGFNIHTKTCVILLDALHKAEC 871 (895)
Q Consensus 833 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 871 (895)
..+..+.|...+-+..... +++......|.-++.-..+
T Consensus 1087 ~~~~k~~A~~lLfe~~~ls-~~~~~sll~L~A~~ild~d 1124 (1238)
T KOG1127|consen 1087 LARQKNDAQFLLFEVKSLS-KVQASSLLPLPAVYILDAD 1124 (1238)
T ss_pred hcccchHHHHHHHHHHHhC-ccchhhHHHHHHHHHHhhh
Confidence 6677777777766665552 5666555555555543333
No 64
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.59 E-value=4.7e-08 Score=105.21 Aligned_cols=631 Identities=13% Similarity=0.191 Sum_probs=330.9
Q ss_pred CCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChH-h
Q 002666 186 FKFRPAFTAYTTLIGALATVRESNLMLNLFHQMQELGYEVSVHLFTTLIRVFAREGRVDDALFLLDEMKNNAFSVDIV-L 264 (895)
Q Consensus 186 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~ 264 (895)
.|+.|+. -.+++.+.+ -.++.+.++...+.+.. +...-+..+...+........+..++-..++.+ .|+.. .
T Consensus 507 vGyTPdy---mflLq~l~r-~sPD~~~qFa~~l~Q~~--~~~~die~I~DlFme~N~iQq~TSFLLdaLK~~-~Pd~g~L 579 (1666)
T KOG0985|consen 507 VGYTPDY---MFLLQQLKR-SSPDQALQFAMMLVQDE--EPLADIEQIVDLFMELNLIQQCTSFLLDALKLN-SPDEGHL 579 (1666)
T ss_pred cCCCccH---HHHHHHHHc-cChhHHHHHHHHhhccC--CCcccHHHHHHHHHHHHhhhhhHHHHHHHhcCC-ChhhhhH
Confidence 3445543 233333333 45556666555555432 122334555556666666666666665555543 33322 2
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCCHHhHHH-----HH
Q 002666 265 YNVCIDCFGKVGKVDMAWKFFHEMKAQGVAPDDVTYTSMIGVLCKSKRLEEAVAMFEQMDRNREVPCAYAYNT-----MI 339 (895)
Q Consensus 265 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-----l~ 339 (895)
-..++..-.. .|-++-+.+...+.- ...-+..+...|.+.|-+..|++.|..+.... -..+.+. .+
T Consensus 580 QTrLLE~NL~-----~aPqVADAILgN~mF-tHyDra~IAqLCEKAGL~qraLehytDl~DIK---R~vVhth~L~pEwL 650 (1666)
T KOG0985|consen 580 QTRLLEMNLV-----HAPQVADAILGNDMF-THYDRAEIAQLCEKAGLLQRALEHYTDLYDIK---RVVVHTHLLNPEWL 650 (1666)
T ss_pred HHHHHHHHhc-----cchHHHHHHHhcccc-ccccHHHHHHHHHhcchHHHHHHhcccHHHHH---HHHHHhccCCHHHH
Confidence 2223322211 122222222222211 11225667778889999999998877654311 1111111 12
Q ss_pred HHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc------------CCCCCHHHHHHH
Q 002666 340 MGYGSVGKFDEAFSLFERLKQKGCIPSVIAYNSLLTCLGKKGRVTEAMKIFEAMKK------------DARPNNTTYNVL 407 (895)
Q Consensus 340 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------------~~~~~~~~~~~l 407 (895)
..|...-.++.+.+.++.|...++..+..+...+..-|...=-.+.-+++|+..+. ....|+......
T Consensus 651 v~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KY 730 (1666)
T KOG0985|consen 651 VNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKY 730 (1666)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHH
Confidence 34555667889999999999888777777776777777766666777777776543 246788888899
Q ss_pred HHHHHhcCCHHHHHHHHHHH------------HHCCC---CC-----ChhhHHHHHHHHHhcCChhHHHHHHHHh-----
Q 002666 408 IDMLCKAGNFEDALKFRDAM------------KEAGL---FP-----NVMTVNIMVDRLCKAQKLDEAFSIFEGM----- 462 (895)
Q Consensus 408 ~~~~~~~g~~~~A~~~~~~~------------~~~~~---~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~----- 462 (895)
|.+.|+.|++.+..++.++- .+..+ .| |...+-.=+-.|.-.++..+-++++-+-
T Consensus 731 IqAA~kt~QikEvERicresn~YdpErvKNfLkeAkL~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~ 810 (1666)
T KOG0985|consen 731 IQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSR 810 (1666)
T ss_pred HHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhccccccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcc
Confidence 99999999998887765542 11111 01 1111111111222223333333333211
Q ss_pred --------hhCCCCCC-----------hhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHhcCCHH
Q 002666 463 --------DHKTCTPD-----------AVTFCSLIDGLGKNGRVDDAYKFYEKMLDTDQIPNAILYTSLIRNFFKHGRKE 523 (895)
Q Consensus 463 --------~~~~~~~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 523 (895)
...++..+ ......+..-..+.+++.--..+++..+..|. .++.++++++..|...++-.
T Consensus 811 ~p~VvG~LLD~dC~E~~ik~Li~~v~gq~~~deLv~EvEkRNRLklLlp~LE~~i~eG~-~d~a~hnAlaKIyIDSNNnP 889 (1666)
T KOG0985|consen 811 TPQVVGALLDVDCSEDFIKNLILSVRGQFPVDELVEEVEKRNRLKLLLPWLESLIQEGS-QDPATHNALAKIYIDSNNNP 889 (1666)
T ss_pred cchhhhhhhcCCCcHHHHHHHHHHHhccCChHHHHHHHHhhhhHHHHHHHHHHHHhccC-cchHHHhhhhheeecCCCCh
Confidence 11111100 00011223334455566666667777777775 37778888888887766543
Q ss_pred HHH-H---HHHHH-----HH-c-----------C--------CCCCHhhHHHHHHHHHHcCChhHH-----------HHH
Q 002666 524 DGH-K---IYKEM-----VQ-R-----------G--------CSPDLMLLNTYMDCVFKAGETEKG-----------RAL 563 (895)
Q Consensus 524 ~A~-~---~~~~~-----~~-~-----------~--------~~~~~~~~~~l~~~~~~~~~~~~a-----------~~~ 563 (895)
+-. + .|+.. -+ + | +......+......+.+..+.+-= +.+
T Consensus 890 E~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqL 969 (1666)
T KOG0985|consen 890 ERFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQL 969 (1666)
T ss_pred HHhcccCCcchhhHHhhhhcccCCceEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHH
Confidence 321 0 11100 00 0 0 000001111122222222221111 111
Q ss_pred HHHHHHCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--CCHHhHHHHHHHHHccCChHHHHHHHHHHHH
Q 002666 564 FEEIKAQGF--VPDVQSYSILIHGLVKAGFAHETDQLFYAMKKQGCV--LDTRAYNTVVDGFCKSGKVNKAYQLLEEMKT 639 (895)
Q Consensus 564 ~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 639 (895)
.++....++ ..|+...+.-..++...+.+.+-.++++++.-.+-. .+...-+.|+-.- -..+.....++.+++-.
T Consensus 970 iDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtA-ikad~trVm~YI~rLdn 1048 (1666)
T KOG0985|consen 970 IDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTA-IKADRTRVMEYINRLDN 1048 (1666)
T ss_pred HHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHH-hhcChHHHHHHHHHhcc
Confidence 122211111 112223333334444444444444444444321100 0011111111111 11222333333333322
Q ss_pred CCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHH
Q 002666 640 KGHYPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNTVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNAYTW 719 (895)
Q Consensus 640 ~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 719 (895)
-+. |+ +.......+-+++|..+|++.. .+..+...|+. ..++.+.|.+.-++. ..+..|
T Consensus 1049 yDa-~~------ia~iai~~~LyEEAF~ifkkf~-----~n~~A~~VLie---~i~~ldRA~efAe~~------n~p~vW 1107 (1666)
T KOG0985|consen 1049 YDA-PD------IAEIAIENQLYEEAFAIFKKFD-----MNVSAIQVLIE---NIGSLDRAYEFAERC------NEPAVW 1107 (1666)
T ss_pred CCc-hh------HHHHHhhhhHHHHHHHHHHHhc-----ccHHHHHHHHH---HhhhHHHHHHHHHhh------CChHHH
Confidence 110 11 1222334445666666665432 23344444443 235566666665553 246788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 002666 720 NCLLDALVKAEEISEAFVCFQSMKDLKCTPNHVTYSIIINGLCRVRKFNKAFVFWQEMQKQGFKPNTITYTTMISGLAKA 799 (895)
Q Consensus 720 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 799 (895)
..++.+-...|.+.+|++-|-+. .|+..|.-+++...+.|+|++-..++..++++.-+|...+ .|+.+|.+.
T Consensus 1108 sqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~--eLi~AyAkt 1179 (1666)
T KOG0985|consen 1108 SQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDS--ELIFAYAKT 1179 (1666)
T ss_pred HHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchH--HHHHHHHHh
Confidence 89999999999999998877543 3556788899999999999999999888887766665544 688889999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHH
Q 002666 800 GNITEANGLFERFKENGGVPDSACYNAMMEGLSNANRAMDAYTLFEETRRKGFNIHTKTCVILLDALHKAECLEQAAIVG 879 (895)
Q Consensus 800 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 879 (895)
+++.+-.++ + .-|+.......++-++..|.++.|.-+|..+ ..+..|+..+...|.++.|.-..
T Consensus 1180 ~rl~elE~f----i---~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AVD~a 1243 (1666)
T KOG0985|consen 1180 NRLTELEEF----I---AGPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGAVDAA 1243 (1666)
T ss_pred chHHHHHHH----h---cCCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHHHh
Confidence 888776543 3 3478888888999999999999887777654 34667888888888888776433
No 65
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.57 E-value=2.1e-11 Score=114.17 Aligned_cols=297 Identities=12% Similarity=0.078 Sum_probs=214.3
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCH---HhHHHHHHHHHccCCHHHH
Q 002666 589 AGFAHETDQLFYAMKKQGCVLDTRAYNTVVDGFCKSGKVNKAYQLLEEMKTKGHYPTV---VTYGSVIDGLAKIDRLDEA 665 (895)
Q Consensus 589 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~~~~~~A 665 (895)
..+.++|.++|-+|.+.. +....+-.+|.+.|.+.|..+.|+.+.+.+.+..-.+.. .....+..-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 467788888888888753 334455567888888888888888888888765211111 1334466667888888999
Q ss_pred HHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 002666 666 YMLFEEAKSKGIELNTVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPN----AYTWNCLLDALVKAEEISEAFVCFQS 741 (895)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~ 741 (895)
..+|....+.+ ..-......|+..|....+|++|++.-+++.+.+-.+. ...|.-|...+....+.+.|..++.+
T Consensus 127 E~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 127 EDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 99998887754 33455677788889999999999999998888554442 23455677777778889999999999
Q ss_pred HHhcCCCCCHH-HHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 002666 742 MKDLKCTPNHV-TYSIIINGLCRVRKFNKAFVFWQEMQKQGFKPNTITYTTMISGLAKAGNITEANGLFERFKENGGVPD 820 (895)
Q Consensus 742 ~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 820 (895)
..+.+ |+.. .--.+.+.....|+++.|.+.++...+++..--..+...|..+|...|+.++....+.++.+ ..+.
T Consensus 206 Alqa~--~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~--~~~g 281 (389)
T COG2956 206 ALQAD--KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME--TNTG 281 (389)
T ss_pred HHhhC--ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--ccCC
Confidence 98844 4432 33357788889999999999999998875444467788888899999999999999999988 4555
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh---cCCHHHHHHHHHHHHHHHHhhhhhh
Q 002666 821 SACYNAMMEGLSNANRAMDAYTLFEETRRKGFNIHTKTCVILLDALHK---AECLEQAAIVGAVLRETAKSQHAAR 893 (895)
Q Consensus 821 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~l~~~~~~~~~~~ 893 (895)
...-..+........-.+.|..++.+-+.+ .|+...+..|+..-.. -|++.+..-+.+.+.....++.|.+
T Consensus 282 ~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~~Y 355 (389)
T COG2956 282 ADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKPRY 355 (389)
T ss_pred ccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcCCc
Confidence 555566666555554555666665555555 5777777766665533 3668888888888888888877765
No 66
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.55 E-value=2.2e-09 Score=112.85 Aligned_cols=430 Identities=11% Similarity=0.033 Sum_probs=253.0
Q ss_pred CCHHhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCC--CCCHHHHHHH
Q 002666 330 PCAYAYNTMIMGYGSVGKFDEAFSLFERLKQKGCIPSVIAYNSLLTCLGKKGRVTEAMKIFEAMKKDA--RPNNTTYNVL 407 (895)
Q Consensus 330 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l 407 (895)
.+...|..|.-+....|+++.+.+.|++....-+ .....|..+...|...|.-..|..+++...... |+++..+...
T Consensus 321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~-~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lma 399 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSF-GEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMA 399 (799)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh-hhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHH
Confidence 4677788888888888999999999988876433 356678888888888888888999888776544 6677777766
Q ss_pred HHHHHh-cCCHHHHHHHHHHHHHC--CC--CCChhhHHHHHHHHHhc-----------CChhHHHHHHHHhhhCCCCCCh
Q 002666 408 IDMLCK-AGNFEDALKFRDAMKEA--GL--FPNVMTVNIMVDRLCKA-----------QKLDEAFSIFEGMDHKTCTPDA 471 (895)
Q Consensus 408 ~~~~~~-~g~~~~A~~~~~~~~~~--~~--~~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~~~~~~~~~ 471 (895)
...|.+ .+.+++++.+..++.+. +. ......|..+.-+|... ....++.+.+++..+.+.. |+
T Consensus 400 sklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~-dp 478 (799)
T KOG4162|consen 400 SKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT-DP 478 (799)
T ss_pred HHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC-Cc
Confidence 666654 57788888877777662 11 11233444444444322 1134667777777776533 55
Q ss_pred hhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHH
Q 002666 472 VTFCSLIDGLGKNGRVDDAYKFYEKMLDTDQIPNAILYTSLIRNFFKHGRKEDGHKIYKEMVQRGCSPDLMLLNTYMDCV 551 (895)
Q Consensus 472 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 551 (895)
.+...+.--|...++++.|.+..++.++.+...+...|..++..+...+++.+|+.+.+..+..- ..|......-+..-
T Consensus 479 ~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l~~~~~~i~ 557 (799)
T KOG4162|consen 479 LVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHVLMDGKIHIE 557 (799)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhhchhhhhhh
Confidence 55555666777888899999999998888767788888888888888889999988888777641 22222222222223
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH--cCCCCCHHhHHHHHHHHHccC---C
Q 002666 552 FKAGETEKGRALFEEIKAQGFVPDVQSYSILIHGLVKAGFAHETDQLFYAMKK--QGCVLDTRAYNTVVDGFCKSG---K 626 (895)
Q Consensus 552 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g---~ 626 (895)
...++.+++......+...- -+..... ..++-.........+.- ........++..+.......+ .
T Consensus 558 ~~~~~~e~~l~t~~~~L~~w--e~~~~~q-------~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~ 628 (799)
T KOG4162|consen 558 LTFNDREEALDTCIHKLALW--EAEYGVQ-------QTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAG 628 (799)
T ss_pred hhcccHHHHHHHHHHHHHHH--HhhhhHh-------hhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcc
Confidence 33556666655544443210 0000000 00000111111111100 000111122222222111111 1
Q ss_pred hHHHHHHHHHHHHCCCCCC------HHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHH
Q 002666 627 VNKAYQLLEEMKTKGHYPT------VVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNTVIYSSLIDGFGKVGRIDEA 700 (895)
Q Consensus 627 ~~~A~~~~~~~~~~~~~p~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 700 (895)
.+.. +...... ..|+ ...|......+.+.+..++|...+.++.... +.....|...+..+...|..++|
T Consensus 629 se~~---Lp~s~~~-~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA 703 (799)
T KOG4162|consen 629 SELK---LPSSTVL-PGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEA 703 (799)
T ss_pred cccc---cCccccc-CCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHH
Confidence 1111 1110000 1122 1234455556666677777776666666543 44555666666667777777777
Q ss_pred HHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHH--HHHHHHhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 002666 701 YLIMEELMQKGLTP-NAYTWNCLLDALVKAEEISEAFV--CFQSMKDLKCTPNHVTYSIIINGLCRVRKFNKAFVFWQEM 777 (895)
Q Consensus 701 ~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 777 (895)
.+.|...+. +.| ++....+++.++.+.|+..-|.. ++..+.+.+ +.++..|..++..+...|+.+.|-+.|+..
T Consensus 704 ~~af~~Al~--ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa 780 (799)
T KOG4162|consen 704 KEAFLVALA--LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAA 780 (799)
T ss_pred HHHHHHHHh--cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHH
Confidence 777777766 344 56666777777777776666665 777777644 345567777777777777777777777766
Q ss_pred HH
Q 002666 778 QK 779 (895)
Q Consensus 778 ~~ 779 (895)
.+
T Consensus 781 ~q 782 (799)
T KOG4162|consen 781 LQ 782 (799)
T ss_pred Hh
Confidence 65
No 67
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.54 E-value=5.4e-11 Score=115.29 Aligned_cols=286 Identities=14% Similarity=0.118 Sum_probs=190.8
Q ss_pred hcCCHhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 002666 309 KSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLFERLKQKGCIPSVIAYNSLLTCLGKKGRVTEAMK 388 (895)
Q Consensus 309 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 388 (895)
..|+|..|.++..+-.+.+.. ....|..-+++--..|+.+.+-.++.++.+....++...+.+..+.....|+++.|..
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 468888888888877666554 3455666666777788888888888888876445566677777888888888888888
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh-------hhHHHHHHHHHhcCChhHHHHHHHH
Q 002666 389 IFEAMKKDARPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEAGLFPNV-------MTVNIMVDRLCKAQKLDEAFSIFEG 461 (895)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~ 461 (895)
-..++....|.++.......++|.+.|++.....++.++.+.|.-.+. .+|..+++-....+..+.-...++.
T Consensus 175 ~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 175 NVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 888888888888888999999999999999999999999888765554 2445555555555555555556665
Q ss_pred hhhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 002666 462 MDHKTCTPDAVTFCSLIDGLGKNGRVDDAYKFYEKMLDTDQIPNAILYTSLIRNFFKHGRKEDGHKIYKEMVQRGCSPDL 541 (895)
Q Consensus 462 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 541 (895)
.... ...++..-.+++.-+.+.|+.++|.++.++.+++...++ .. ......+.++...-++..+...... +.++
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~-~~~~~l~~~d~~~l~k~~e~~l~~h-~~~p 328 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LC-RLIPRLRPGDPEPLIKAAEKWLKQH-PEDP 328 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HH-HHHhhcCCCCchHHHHHHHHHHHhC-CCCh
Confidence 5443 233455566667777777777777777777777654333 11 1123344555555555555555441 3344
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 002666 542 MLLNTYMDCVFKAGETEKGRALFEEIKAQGFVPDVQSYSILIHGLVKAGFAHETDQLFYAMK 603 (895)
Q Consensus 542 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 603 (895)
..+.++...|.+.+.+.+|...|+...+. .|+..+|..+.+.+.+.|+..+|.+..++..
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 55556666666666666666666655554 4566666666666666666666666655544
No 68
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.54 E-value=5.3e-11 Score=115.36 Aligned_cols=288 Identities=14% Similarity=0.142 Sum_probs=220.0
Q ss_pred hcCChhHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHH
Q 002666 239 REGRVDDALFLLDEMKNNAFSVDIVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGVAPDDVTYTSMIGVLCKSKRLEEAVA 318 (895)
Q Consensus 239 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~ 318 (895)
-.|+|..|.....+-.+.+ +.....|..-+++--+.|+.+.+-.++.+..+....++...+-+........|+++.|..
T Consensus 96 ~eG~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred hcCcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 4688888888888877765 333445666667777888888998888888876335566667777788888899999998
Q ss_pred HHHHHhhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHH
Q 002666 319 MFEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLFERLKQKGCIPSV-------IAYNSLLTCLGKKGRVTEAMKIFE 391 (895)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~ 391 (895)
-.++..+.++. +.........+|.+.|++.....++..+.+.|.-.+. .+|..+++-....+..+.-.+.++
T Consensus 175 ~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~ 253 (400)
T COG3071 175 NVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK 253 (400)
T ss_pred HHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 88888888776 7778888888899999999999999999888765443 366677776666677777777788
Q ss_pred HHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCh
Q 002666 392 AMKKDARPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEAGLFPNVMTVNIMVDRLCKAQKLDEAFSIFEGMDHKTCTPDA 471 (895)
Q Consensus 392 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 471 (895)
........++..-..++.-+.+.|+.++|.++..+..+.+..|+ . ...-...+-++.+.-.+..++..+.. +.++
T Consensus 254 ~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L-~~~~~~l~~~d~~~l~k~~e~~l~~h-~~~p 328 (400)
T COG3071 254 NQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---L-CRLIPRLRPGDPEPLIKAAEKWLKQH-PEDP 328 (400)
T ss_pred hccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---H-HHHHhhcCCCCchHHHHHHHHHHHhC-CCCh
Confidence 77777777888888888889999999999998888888765544 1 12223446677777777776666552 3356
Q ss_pred hhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 002666 472 VTFCSLIDGLGKNGRVDDAYKFYEKMLDTDQIPNAILYTSLIRNFFKHGRKEDGHKIYKEMVQR 535 (895)
Q Consensus 472 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 535 (895)
..+.+++..|.+.+.+.+|...|+..++. .|+...|..+...+.+.|+..+|...+++.+..
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 77888888888888888888888888776 467888888888888888888888888877644
No 69
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.53 E-value=2.2e-08 Score=103.96 Aligned_cols=191 Identities=18% Similarity=0.226 Sum_probs=103.1
Q ss_pred HHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCCHHH
Q 002666 271 CFGKVGKVDMAWKFFHEMKAQGVAPDDVTYTSMIGVLCKSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFDE 350 (895)
Q Consensus 271 ~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 350 (895)
+-.....+.+|+.+++.+.++.. -..-|..+...|...|+++.|.++|-+. ..++--|..|.+.|+++.
T Consensus 741 aai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~d 809 (1636)
T KOG3616|consen 741 AAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWED 809 (1636)
T ss_pred HHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHH
Confidence 33445566666666666555421 2233555556666667777777666543 223445566667777777
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 002666 351 AFSLFERLKQKGCIPSVIAYNSLLTCLGKKGRVTEAMKIFEAMKKDARPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEA 430 (895)
Q Consensus 351 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 430 (895)
|.++-.+... .......|..-..-+-+.|++.+|.++|-.+.. | ...|.+|-+.|..+..+++..+-...
T Consensus 810 a~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~~---p-----~~aiqmydk~~~~ddmirlv~k~h~d 879 (1636)
T KOG3616|consen 810 AFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIGE---P-----DKAIQMYDKHGLDDDMIRLVEKHHGD 879 (1636)
T ss_pred HHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEccC---c-----hHHHHHHHhhCcchHHHHHHHHhChh
Confidence 6666555432 233444555555556666666666666543321 1 23355666666666666655543221
Q ss_pred CCCCChhhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhhcCCHHHHHHHH
Q 002666 431 GLFPNVMTVNIMVDRLCKAQKLDEAFSIFEGMDHKTCTPDAVTFCSLIDGLGKNGRVDDAYKFY 494 (895)
Q Consensus 431 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 494 (895)
.-..|...+..-|...|++..|...|-+.. -|.+.+++|-..+.+++|.++-
T Consensus 880 ---~l~dt~~~f~~e~e~~g~lkaae~~flea~---------d~kaavnmyk~s~lw~dayria 931 (1636)
T KOG3616|consen 880 ---HLHDTHKHFAKELEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASELWEDAYRIA 931 (1636)
T ss_pred ---hhhHHHHHHHHHHHhccChhHHHHHHHhhh---------hHHHHHHHhhhhhhHHHHHHHH
Confidence 112344555666666677766666554322 2344455555555666555543
No 70
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=6e-09 Score=101.10 Aligned_cols=269 Identities=14% Similarity=0.062 Sum_probs=145.4
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHhHHH
Q 002666 572 FVPDVQSYSILIHGLVKAGFAHETDQLFYAMKKQGCVLDTRAYNTVVDGFCKSGKVNKAYQLLEEMKTKGHYPTVVTYGS 651 (895)
Q Consensus 572 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 651 (895)
++-|......+...+...|+..+|...|++....+ +.+........-.+.+.|+++....+...+....- .+..-|..
T Consensus 228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d-py~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~-~ta~~wfV 305 (564)
T KOG1174|consen 228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN-PDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVK-YTASHWFV 305 (564)
T ss_pred CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC-hhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhh-cchhhhhh
Confidence 34445555666666666666666666666655432 11122222223334455666666555555554311 12222222
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcC
Q 002666 652 VIDGLAKIDRLDEAYMLFEEAKSKGIELNTVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTP-NAYTWNCLLDALVKAE 730 (895)
Q Consensus 652 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g 730 (895)
-...+...++++.|+.+-++.++.+ +.+...+..-+..+...|+.++|.-.|+.++. +.| +..+|..|+.+|...|
T Consensus 306 ~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~ 382 (564)
T KOG1174|consen 306 HAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQK 382 (564)
T ss_pred hhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhc
Confidence 2333445556666666666666543 22344444445556666666666666666665 333 5666666666666666
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHH-HHHHh-cCCHhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHH
Q 002666 731 EISEAFVCFQSMKDLKCTPNHVTYSIII-NGLCR-VRKFNKAFVFWQEMQKQGFKPN-TITYTTMISGLAKAGNITEANG 807 (895)
Q Consensus 731 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~-~~~~~-~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~ 807 (895)
.+.+|.-+.+...+. .+.+..+...+. ..|.. ..--++|.+++++.+. +.|+ ....+.+...+...|..+.++.
T Consensus 383 ~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~--~~P~Y~~AV~~~AEL~~~Eg~~~D~i~ 459 (564)
T KOG1174|consen 383 RFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK--INPIYTPAVNLIAELCQVEGPTKDIIK 459 (564)
T ss_pred hHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc--cCCccHHHHHHHHHHHHhhCccchHHH
Confidence 666666666555541 223333443332 22222 2233566666666654 4454 2344445555666666666666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 002666 808 LFERFKENGGVPDSACYNAMMEGLSNANRAMDAYTLFEETRRK 850 (895)
Q Consensus 808 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 850 (895)
++++.+. ..||......|+..+...+.+++|...|..++..
T Consensus 460 LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 460 LLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred HHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 6666665 5566666666666666666666666666666655
No 71
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.51 E-value=1e-07 Score=99.19 Aligned_cols=220 Identities=18% Similarity=0.233 Sum_probs=158.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChh
Q 002666 374 LTCLGKKGRVTEAMKIFEAMKKDARPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEAGLFPNVMTVNIMVDRLCKAQKLD 453 (895)
Q Consensus 374 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 453 (895)
...+...|+++.|+..|-+... ....+.+......|.+|+.+++.+.+... -...|..+.+.|...|+++
T Consensus 713 g~hl~~~~q~daainhfiea~~--------~~kaieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe 782 (1636)
T KOG3616|consen 713 GDHLEQIGQLDAAINHFIEANC--------LIKAIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFE 782 (1636)
T ss_pred hHHHHHHHhHHHHHHHHHHhhh--------HHHHHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHH
Confidence 3445667888888877755432 34456677788999999999998887542 3445778889999999999
Q ss_pred HHHHHHHHhhhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002666 454 EAFSIFEGMDHKTCTPDAVTFCSLIDGLGKNGRVDDAYKFYEKMLDTDQIPNAILYTSLIRNFFKHGRKEDGHKIYKEMV 533 (895)
Q Consensus 454 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 533 (895)
.|.++|-+. ..+.-.+.+|.+.|++++|.++-.+.. ++......|..-..-+-+.|++.+|.++|-.+.
T Consensus 783 ~ae~lf~e~---------~~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~ 851 (1636)
T KOG3616|consen 783 IAEELFTEA---------DLFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG 851 (1636)
T ss_pred HHHHHHHhc---------chhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc
Confidence 999998643 234567889999999999999887765 344566667777777888999999988875442
Q ss_pred HcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHh
Q 002666 534 QRGCSPDLMLLNTYMDCVFKAGETEKGRALFEEIKAQGFVPDVQSYSILIHGLVKAGFAHETDQLFYAMKKQGCVLDTRA 613 (895)
Q Consensus 534 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 613 (895)
.|+ ..+..|-+.|..+..+.+..+.... .-..|...+..-|...|+...|...|-+.. -
T Consensus 852 ----~p~-----~aiqmydk~~~~ddmirlv~k~h~d---~l~dt~~~f~~e~e~~g~lkaae~~flea~---------d 910 (1636)
T KOG3616|consen 852 ----EPD-----KAIQMYDKHGLDDDMIRLVEKHHGD---HLHDTHKHFAKELEAEGDLKAAEEHFLEAG---------D 910 (1636)
T ss_pred ----Cch-----HHHHHHHhhCcchHHHHHHHHhChh---hhhHHHHHHHHHHHhccChhHHHHHHHhhh---------h
Confidence 233 3456778888888888877664321 123455667777888899998888775443 2
Q ss_pred HHHHHHHHHccCChHHHHHHHH
Q 002666 614 YNTVVDGFCKSGKVNKAYQLLE 635 (895)
Q Consensus 614 ~~~l~~~~~~~g~~~~A~~~~~ 635 (895)
|...++.|-.++.+++|.++-+
T Consensus 911 ~kaavnmyk~s~lw~dayriak 932 (1636)
T KOG3616|consen 911 FKAAVNMYKASELWEDAYRIAK 932 (1636)
T ss_pred HHHHHHHhhhhhhHHHHHHHHh
Confidence 5566677777777777766644
No 72
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.49 E-value=1.7e-08 Score=106.21 Aligned_cols=243 Identities=14% Similarity=0.179 Sum_probs=144.2
Q ss_pred HhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHH------------HHcCCCcCHHHHHHHHH
Q 002666 168 VKSKMLREAFDIIQTMRKFKFRPAFTAYTTLIGALATVRESNLMLNLFHQM------------QELGYEVSVHLFTTLIR 235 (895)
Q Consensus 168 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~------------~~~~~~~~~~~~~~l~~ 235 (895)
.--|+.+.|..-++.+. +...|..+.+.+.+..+.+-|.-++..| .+.| + ..-..++-
T Consensus 739 vtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~---~-e~eakvAv 808 (1416)
T KOG3617|consen 739 VTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNG---E-EDEAKVAV 808 (1416)
T ss_pred EEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCC---c-chhhHHHH
Confidence 34566666655555443 3345666666666655555554444333 2221 1 22233344
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhH
Q 002666 236 VFAREGRVDDALFLLDEMKNNAFSVDIVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGVAPDDVTYTSMIGVLCKSKRLEE 315 (895)
Q Consensus 236 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~ 315 (895)
.-...|.+++|..+|.+-++. ..+=..|-..|.+++|.++-+.--+.. -..||.....-+...++.+.
T Consensus 809 LAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA~~Lear~Di~~ 876 (1416)
T KOG3617|consen 809 LAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYAKYLEARRDIEA 876 (1416)
T ss_pred HHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHHHHHHhhccHHH
Confidence 445778888888888877653 344456677788888888765432221 23567777777777888888
Q ss_pred HHHHHHHHhhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 002666 316 AVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLFERLKQKGCIPSVIAYNSLLTCLGKKGRVTEAMKIFEAMKK 395 (895)
Q Consensus 316 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 395 (895)
|+++|++... |-...+..|. .++.....+.+++. |...|..-...+-..|+.+.|+.+|...+.
T Consensus 877 AleyyEK~~~----hafev~rmL~------e~p~~~e~Yv~~~~------d~~L~~WWgqYlES~GemdaAl~~Y~~A~D 940 (1416)
T KOG3617|consen 877 ALEYYEKAGV----HAFEVFRMLK------EYPKQIEQYVRRKR------DESLYSWWGQYLESVGEMDAALSFYSSAKD 940 (1416)
T ss_pred HHHHHHhcCC----hHHHHHHHHH------hChHHHHHHHHhcc------chHHHHHHHHHHhcccchHHHHHHHHHhhh
Confidence 8888887432 1111111111 11222222222222 445566666666677888888888877665
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHh
Q 002666 396 DARPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEAGLFPNVMTVNIMVDRLCKAQKLDEAFSIFEGM 462 (895)
Q Consensus 396 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 462 (895)
|..+++..|-.|+.++|-++.++- .|......+.+.|...|++.+|..+|.+.
T Consensus 941 --------~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 941 --------YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred --------hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 777777777788888877776543 24445566777777778888877777654
No 73
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.48 E-value=1.2e-08 Score=103.89 Aligned_cols=462 Identities=13% Similarity=0.098 Sum_probs=215.1
Q ss_pred HHHHHhcCCHhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 002666 304 IGVLCKSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLFERLKQKGCIPSVIAYNSLLTCLGKKGRV 383 (895)
Q Consensus 304 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 383 (895)
++.+...|++++|.+...+++..++. +..++..-+-++.+.+.+++|+.+.+.-... .-+.+.+..-+.+..+.+..
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~pd-d~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrlnk~ 95 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIVPD-DEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLNKL 95 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcCCC-cHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHcccH
Confidence 34455666677777776666666543 5556666666666666777666433321110 00111112223344467777
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH-HHhcCChhHHHHHHHHh
Q 002666 384 TEAMKIFEAMKKDARPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEAGLFPNVMTVNIMVDR-LCKAQKLDEAFSIFEGM 462 (895)
Q Consensus 384 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~ 462 (895)
++|+..++.. .+.+..+...-++.+.+.|++++|+.+|+.+.+.+.. + +...+.+ +...+..-.+. +++..
T Consensus 96 Dealk~~~~~---~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~d-d---~d~~~r~nl~a~~a~l~~~-~~q~v 167 (652)
T KOG2376|consen 96 DEALKTLKGL---DRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSD-D---QDEERRANLLAVAAALQVQ-LLQSV 167 (652)
T ss_pred HHHHHHHhcc---cccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc-h---HHHHHHHHHHHHHHhhhHH-HHHhc
Confidence 7777776622 2333445566667777777777777777777665432 1 1111111 11111111111 22222
Q ss_pred hhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCC------cc-h-------hhHHHHHHHHHhcCCHHHHHHH
Q 002666 463 DHKTCTPDAVTFCSLIDGLGKNGRVDDAYKFYEKMLDTDQI------PN-A-------ILYTSLIRNFFKHGRKEDGHKI 528 (895)
Q Consensus 463 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------~~-~-------~~~~~l~~~~~~~~~~~~A~~~ 528 (895)
... ...+-..+......+...|++.+|++++..+.+.+.. .+ . ..-..+...+...|+.++|..+
T Consensus 168 ~~v-~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~i 246 (652)
T KOG2376|consen 168 PEV-PEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSI 246 (652)
T ss_pred cCC-CcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 111 1112223344455566778888888887777332110 00 0 1123455556666777777777
Q ss_pred HHHHHHcCCCCCHhhHHHHHHHHHH---cCChhH--HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 002666 529 YKEMVQRGCSPDLMLLNTYMDCVFK---AGETEK--GRALFEEIKAQGFVPDVQSYSILIHGLVKAGFAHETDQLFYAMK 603 (895)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~--a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 603 (895)
|...++.. ++|.........-+.. -.++-. ++..++... ..-+......+.
T Consensus 247 y~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~-----------------------~~l~~~~l~~Ls 302 (652)
T KOG2376|consen 247 YVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQV-----------------------FKLAEFLLSKLS 302 (652)
T ss_pred HHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHH-----------------------HHhHHHHHHHHH
Confidence 77766654 3333222111111110 000000 000111000 001111111111
Q ss_pred HcCCCCCHHhHH-HHHHHHHccCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHH-HccCCHHHHHHHHHHHHHcCCCcCH
Q 002666 604 KQGCVLDTRAYN-TVVDGFCKSGKVNKAYQLLEEMKTKGHYPTVVTYGSVIDGL-AKIDRLDEAYMLFEEAKSKGIELNT 681 (895)
Q Consensus 604 ~~~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~~~~~~A~~~~~~~~~~~~~~~~ 681 (895)
.. .-.....| .++.. -.+..+.+.++....-. ..|....-..+..++ .+...+.++.+++...-+.......
T Consensus 303 ~~--qk~~i~~N~~lL~l--~tnk~~q~r~~~a~lp~--~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~ 376 (652)
T KOG2376|consen 303 KK--QKQAIYRNNALLAL--FTNKMDQVRELSASLPG--MSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSK 376 (652)
T ss_pred HH--HHHHHHHHHHHHHH--HhhhHHHHHHHHHhCCc--cCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhH
Confidence 11 00011111 11211 12333444433333221 123322222222222 2222466677777666655322234
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHH--------HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCCCCH
Q 002666 682 VIYSSLIDGFGKVGRIDEAYLIME--------ELMQKGLTPNAYTWNCLLDALVKAEEISEAFVCFQSMKDL--KCTPNH 751 (895)
Q Consensus 682 ~~~~~l~~~~~~~g~~~~A~~~~~--------~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~~ 751 (895)
.+...++......|+++.|++++. .+.+.+..|. +...+...+.+.++.+.|..++.+.+.. .-.+..
T Consensus 377 ~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s 454 (652)
T KOG2376|consen 377 VVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPG--TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGS 454 (652)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChh--HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccc
Confidence 455566667777888888888887 4444333333 3334555566666656566666555431 011111
Q ss_pred H----HHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 002666 752 V----TYSIIINGLCRVRKFNKAFVFWQEMQKQGFKPNTITYTTMISGLAKAGNITEANGLFER 811 (895)
Q Consensus 752 ~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 811 (895)
. ++.-++..-.+.|+-++|..+++++.+. .++|..+...++.+|+.. +.++|..+-..
T Consensus 455 ~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~-n~~d~~~l~~lV~a~~~~-d~eka~~l~k~ 516 (652)
T KOG2376|consen 455 IALLSLMREAAEFKLRHGNEEEASSLLEELVKF-NPNDTDLLVQLVTAYARL-DPEKAESLSKK 516 (652)
T ss_pred hHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHh-CCchHHHHHHHHHHHHhc-CHHHHHHHhhc
Confidence 2 2222333344557777777777777764 355667777777777655 56666655443
No 74
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.47 E-value=1.2e-08 Score=107.29 Aligned_cols=228 Identities=15% Similarity=0.233 Sum_probs=154.6
Q ss_pred cCChHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHccCCcchHHHHHHHHHHc--------CCCCChhhHHHHHHHHHhc
Q 002666 99 LKDVNLAINYFRWVERKTDQAHSLEAYNSLLMVMAVSKNFEPLEEILGEMSLA--------GIGPTNNTCIELVVSCVKS 170 (895)
Q Consensus 99 ~~~~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~--------~~~~~~~~~~~l~~~~~~~ 170 (895)
.|+.+.|++--+.+. +-.+|..|++.+.+.++.+-|.-++..|... ....+...-..........
T Consensus 741 iG~MD~AfksI~~Ik-------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieL 813 (1416)
T KOG3617|consen 741 IGSMDAAFKSIQFIK-------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIEL 813 (1416)
T ss_pred eccHHHHHHHHHHHh-------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHH
Confidence 477777777666655 4478999999999999999999999887432 1122223333344445678
Q ss_pred CChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHH
Q 002666 171 KMLREAFDIIQTMRKFKFRPAFTAYTTLIGALATVRESNLMLNLFHQMQELGYEVSVHLFTTLIRVFAREGRVDDALFLL 250 (895)
Q Consensus 171 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 250 (895)
|+.++|..+|.+-.+. ..|-..|...|.+++|.++-+.-... . -..+|...+.-+-..++.+.|++.|
T Consensus 814 gMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRi--H-Lr~Tyy~yA~~Lear~Di~~Aleyy 881 (1416)
T KOG3617|consen 814 GMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRI--H-LRNTYYNYAKYLEARRDIEAALEYY 881 (1416)
T ss_pred hhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccce--e-hhhhHHHHHHHHHhhccHHHHHHHH
Confidence 9999999999887643 44555677789999998876543222 1 2357888888888889999999988
Q ss_pred HHH----------HhCCC---------CCChHhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 002666 251 DEM----------KNNAF---------SVDIVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGVAPDDVTYTSMIGVLCKSK 311 (895)
Q Consensus 251 ~~~----------~~~~~---------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g 311 (895)
++. +...+ ..|...|.+....+-..|+.|.|+.+|...++ |.++++..|-+|
T Consensus 882 EK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qG 952 (1416)
T KOG3617|consen 882 EKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQG 952 (1416)
T ss_pred HhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeecc
Confidence 863 22111 23455666666666667777777777765543 455666777777
Q ss_pred CHhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 002666 312 RLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLFERLKQ 360 (895)
Q Consensus 312 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 360 (895)
+.++|-++-++- -|..+...|.+.|-..|++.+|...|.++..
T Consensus 953 k~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 953 KTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQA 995 (1416)
T ss_pred CchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 777777666553 2556666777777777777777777766543
No 75
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.46 E-value=2.2e-11 Score=113.82 Aligned_cols=229 Identities=12% Similarity=0.125 Sum_probs=122.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhc
Q 002666 161 IELVVSCVKSKMLREAFDIIQTMRKFKFRPAFTAYTTLIGALATVRESNLMLNLFHQMQELGYEVSVHLFTTLIRVFARE 240 (895)
Q Consensus 161 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 240 (895)
+.+...|.+.|.+.+|...|+...+. .|-+.+|..|..+|.+..++..|+.+|.+-.+. +|.++......++++-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 45666666666666666666655544 344455555556666666666666666555554 344444445555555555
Q ss_pred CChhHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHH
Q 002666 241 GRVDDALFLLDEMKNNAFSVDIVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGVAPDDVTYTSMIGVLCKSKRLEEAVAMF 320 (895)
Q Consensus 241 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 320 (895)
++.++|.++++...+.. +.++.....+...|.-.++.+.|+.+++++...|+. +...|..+.-+|.-.++++-++..|
T Consensus 304 ~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHH
Confidence 55555555555555543 333444444444455555555555555555555544 4444444444444555555555555
Q ss_pred HHHhhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCC
Q 002666 321 EQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLFERLKQKGCIPS--VIAYNSLLTCLGKKGRVTEAMKIFEAMKKDAR 398 (895)
Q Consensus 321 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 398 (895)
++.+ ..--.|+ ..+|..+.......||+..|.+.|+-.....+
T Consensus 382 ~RAl-----------------------------------stat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~ 426 (478)
T KOG1129|consen 382 QRAL-----------------------------------STATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDA 426 (478)
T ss_pred HHHH-----------------------------------hhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCc
Confidence 5444 3222222 23444555555555555555555555555555
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002666 399 PNNTTYNVLIDMLCKAGNFEDALKFRDAMKE 429 (895)
Q Consensus 399 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 429 (895)
.+..+++.|+-.-.+.|+.++|..++.....
T Consensus 427 ~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 427 QHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred chHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 5555566665555566666666666655554
No 76
>PRK12370 invasion protein regulator; Provisional
Probab=99.45 E-value=7.8e-11 Score=130.75 Aligned_cols=179 Identities=11% Similarity=0.065 Sum_probs=91.1
Q ss_pred hhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHH
Q 002666 278 VDMAWKFFHEMKAQGVAPDDVTYTSMIGVLCKSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLFER 357 (895)
Q Consensus 278 ~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 357 (895)
+++|...++++.+.+.. +..++..+...+...|++++|+..|+++++.+|. +..++..++..+...|++++|...+++
T Consensus 320 ~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~ 397 (553)
T PRK12370 320 MIKAKEHAIKATELDHN-NPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINE 397 (553)
T ss_pred HHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 45566666665554322 4445555555555566666666666666555543 455555555556666666666666666
Q ss_pred HHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-
Q 002666 358 LKQKGCIPSVIAYNSLLTCLGKKGRVTEAMKIFEAMKKDA-RPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEAGLFPN- 435 (895)
Q Consensus 358 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~- 435 (895)
+.+.++. +...+..++..+...|++++|+..++++.... |.++..+..++.++...|++++|...+.++... .|+
T Consensus 398 Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~ 474 (553)
T PRK12370 398 CLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITG 474 (553)
T ss_pred HHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchh
Confidence 6555422 12222233333444555666666665554433 334444555555666666666666666555432 122
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHhh
Q 002666 436 VMTVNIMVDRLCKAQKLDEAFSIFEGMD 463 (895)
Q Consensus 436 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 463 (895)
....+.+...|+..| +.|...++.+.
T Consensus 475 ~~~~~~l~~~~~~~g--~~a~~~l~~ll 500 (553)
T PRK12370 475 LIAVNLLYAEYCQNS--ERALPTIREFL 500 (553)
T ss_pred HHHHHHHHHHHhccH--HHHHHHHHHHH
Confidence 222333334444444 34444444443
No 77
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.45 E-value=7.9e-09 Score=105.30 Aligned_cols=81 Identities=9% Similarity=0.107 Sum_probs=43.1
Q ss_pred CHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHhcCCHHHHHHHHH--------HHHHcCCCCCHhhHHHHHHHHHHcCCh
Q 002666 486 RVDDAYKFYEKMLDTDQIPNAILYTSLIRNFFKHGRKEDGHKIYK--------EMVQRGCSPDLMLLNTYMDCVFKAGET 557 (895)
Q Consensus 486 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~~~~ 557 (895)
.+.+|..++...-+..+.....+....+...+..|+++.|++++. .+.+.+. .+.+...+...+.+.++.
T Consensus 356 ~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~--~P~~V~aiv~l~~~~~~~ 433 (652)
T KOG2376|consen 356 KHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKH--LPGTVGAIVALYYKIKDN 433 (652)
T ss_pred HHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhcc--ChhHHHHHHHHHHhccCC
Confidence 455666666666655444334455556666667777777777766 3333222 223333444445555555
Q ss_pred hHHHHHHHHHH
Q 002666 558 EKGRALFEEIK 568 (895)
Q Consensus 558 ~~a~~~~~~~~ 568 (895)
+.|..++.+..
T Consensus 434 ~~a~~vl~~Ai 444 (652)
T KOG2376|consen 434 DSASAVLDSAI 444 (652)
T ss_pred ccHHHHHHHHH
Confidence 55555555443
No 78
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=1.5e-08 Score=98.50 Aligned_cols=288 Identities=15% Similarity=0.075 Sum_probs=159.1
Q ss_pred hcCChhHHHHHHHHHHh-CCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHhHH
Q 002666 239 REGRVDDALFLLDEMKN-NAFSVDIVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGVAPDDV-TYTSMIGVLCKSKRLEEA 316 (895)
Q Consensus 239 ~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A 316 (895)
-.++...|...+-.+.. ..++.|+.....+..++...|+.++|+..|++.... .|+.. ......-.+.+.|+++.-
T Consensus 208 ~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~ 285 (564)
T KOG1174|consen 208 FNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQD 285 (564)
T ss_pred HhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhH
Confidence 34444444444433322 223455666666777777777777777777766553 23332 122223334566666666
Q ss_pred HHHHHHHhhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcC
Q 002666 317 VAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLFERLKQKGCIPSVIAYNSLLTCLGKKGRVTEAMKIFEAMKKD 396 (895)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 396 (895)
..+...+...... ....|..-+.......++..|+.+-++.++.+. -+...+..-+..+...|+.++|.-.|+.....
T Consensus 286 ~~L~~~Lf~~~~~-ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~-r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L 363 (564)
T KOG1174|consen 286 SALMDYLFAKVKY-TASHWFVHAQLLYDEKKFERALNFVEKCIDSEP-RNHEALILKGRLLIALERHTQAVIAFRTAQML 363 (564)
T ss_pred HHHHHHHHhhhhc-chhhhhhhhhhhhhhhhHHHHHHHHHHHhccCc-ccchHHHhccHHHHhccchHHHHHHHHHHHhc
Confidence 6655555443211 333344444445556667777777776666542 24455555566666677777777777776666
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHH-HHHH-hcCChhHHHHHHHHhhhCCCCCC-hhh
Q 002666 397 ARPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEAGLFPNVMTVNIMV-DRLC-KAQKLDEAFSIFEGMDHKTCTPD-AVT 473 (895)
Q Consensus 397 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~g~~~~A~~~~~~~~~~~~~~~-~~~ 473 (895)
.|-+..+|..|+.+|...|++.+|.-+-+..... .+.+..+...+. ..+. ....-++|..++++.... .|+ ...
T Consensus 364 ap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~A 440 (564)
T KOG1174|consen 364 APYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPA 440 (564)
T ss_pred chhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHH
Confidence 6667777777777777777777766655544432 122334443332 1221 122345666666655544 222 234
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 002666 474 FCSLIDGLGKNGRVDDAYKFYEKMLDTDQIPNAILYTSLIRNFFKHGRKEDGHKIYKEMVQR 535 (895)
Q Consensus 474 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 535 (895)
...+...+...|...+++.++++.+.. .+|......|+..+...+.+.+|.+.|...+..
T Consensus 441 V~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 441 VNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 455555666666666666666666554 345666666666666666666666666666554
No 79
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.44 E-value=1.1e-10 Score=122.21 Aligned_cols=246 Identities=20% Similarity=0.183 Sum_probs=173.6
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHc-----CC-CcCHH-HHHHHHHHHHccCCHHHHHHHHHHHHH-----CCC-CC
Q 002666 648 TYGSVIDGLAKIDRLDEAYMLFEEAKSK-----GI-ELNTV-IYSSLIDGFGKVGRIDEAYLIMEELMQ-----KGL-TP 714 (895)
Q Consensus 648 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~-~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~-~p 714 (895)
+...+...|...|++++|..+++.+++. |. .|... ..+.+...|...+++++|..+|++++. .|- .|
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 4445666677777777777777766543 11 12222 333477788888888888888888876 121 12
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CC-CCCH-HHHHHHHHHHHhcCCHhHHHHHHHHHHHC---CCC
Q 002666 715 -NAYTWNCLLDALVKAEEISEAFVCFQSMKDL-----KC-TPNH-VTYSIIINGLCRVRKFNKAFVFWQEMQKQ---GFK 783 (895)
Q Consensus 715 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~-~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~ 783 (895)
-..+++.|..+|.+.|++++|..+++++.+. +. .|.. ..++.++..|+..+++++|..++++..+. -+.
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g 360 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG 360 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence 2456777888888999988888888776541 11 2222 23556777888899999999988877654 122
Q ss_pred CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---
Q 002666 784 PN----TITYTTMISGLAKAGNITEANGLFERFKEN-----G-GVP-DSACYNAMMEGLSNANRAMDAYTLFEETRR--- 849 (895)
Q Consensus 784 p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--- 849 (895)
++ ..+++.|...|...|++++|.++++++++. | ..+ ....++.|+..|.+.+++++|..+|++...
T Consensus 361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~ 440 (508)
T KOG1840|consen 361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMK 440 (508)
T ss_pred ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 22 358899999999999999999999998764 1 122 245677889999999999888888876432
Q ss_pred -C--CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhhhhhh
Q 002666 850 -K--GFNIHTKTCVILLDALHKAECLEQAAIVGAVLRETAKSQHAAR 893 (895)
Q Consensus 850 -~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~~~ 893 (895)
. +.|....++..|+.+|.+.|++|+|.++...+.....++.+..
T Consensus 441 ~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~~~~~~~~ 487 (508)
T KOG1840|consen 441 LCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNAREQRLGTA 487 (508)
T ss_pred HhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcCCCC
Confidence 1 2334456777899999999999999999999988877766543
No 80
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.42 E-value=1.2e-10 Score=115.48 Aligned_cols=198 Identities=15% Similarity=0.133 Sum_probs=134.2
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 002666 681 TVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNAYTWNCLLDALVKAEEISEAFVCFQSMKDLKCTPNHVTYSIIING 760 (895)
Q Consensus 681 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 760 (895)
...+..++..+...|++++|...++++++.. +.+...+..++..+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 4455566666777777777777777776632 2245666667777777777777777777777643 3344556666777
Q ss_pred HHhcCCHhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHH
Q 002666 761 LCRVRKFNKAFVFWQEMQKQGF-KPNTITYTTMISGLAKAGNITEANGLFERFKENGGVP-DSACYNAMMEGLSNANRAM 838 (895)
Q Consensus 761 ~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~ 838 (895)
+...|++++|.+.++++.+... ......+..+..++...|++++|...+++.++ ..| +...+..++..+...|+++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQ--IDPQRPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCChHHHHHHHHHHHHcCCHH
Confidence 7777777777777777765421 22344566677777777888888888887776 344 4566777777788888888
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002666 839 DAYTLFEETRRKGFNIHTKTCVILLDALHKAECLEQAAIVGAVLR 883 (895)
Q Consensus 839 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~l~ 883 (895)
+|...++++... .+.+...+..++..+...|+.++|....+.+.
T Consensus 187 ~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 187 DARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 888888877766 35566666677777777788888777555443
No 81
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.42 E-value=7.4e-09 Score=110.37 Aligned_cols=290 Identities=14% Similarity=0.156 Sum_probs=154.3
Q ss_pred HHhcCCHhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh-----cC
Q 002666 307 LCKSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLFERLKQKGCIPSVIAYNSLLTCLGK-----KG 381 (895)
Q Consensus 307 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~g 381 (895)
+...|++++|++.++.-...-+ .....+...+..+.+.|+.++|..++..+++.++ .+...|..+..+..- ..
T Consensus 14 l~e~g~~~~AL~~L~~~~~~I~-Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNP-dn~~Yy~~L~~~~g~~~~~~~~ 91 (517)
T PF12569_consen 14 LEEAGDYEEALEHLEKNEKQIL-DKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNP-DNYDYYRGLEEALGLQLQLSDE 91 (517)
T ss_pred HHHCCCHHHHHHHHHhhhhhCC-CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHhhhcccccc
Confidence 3444555555555544333211 1233334444455555555555555555555442 122233333333311 12
Q ss_pred CHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 002666 382 RVTEAMKIFEAMKKDARPNNTTYNVLIDMLCKAGNF-EDALKFRDAMKEAGLFPNVMTVNIMVDRLCKAQKLDEAFSIFE 460 (895)
Q Consensus 382 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 460 (895)
+.+...++|+++....|.....-..-+... .-..+ ..+..++..+...|+++ ++..+-..|....+.+-..+++.
T Consensus 92 ~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~-~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~~ 167 (517)
T PF12569_consen 92 DVEKLLELYDELAEKYPRSDAPRRLPLDFL-EGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESLVE 167 (517)
T ss_pred cHHHHHHHHHHHHHhCccccchhHhhcccC-CHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHHHH
Confidence 344455555555444433222211111111 11122 23344556666666543 34444444443444443444444
Q ss_pred HhhhC--------------CCCCCh--hhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHhcCCHHH
Q 002666 461 GMDHK--------------TCTPDA--VTFCSLIDGLGKNGRVDDAYKFYEKMLDTDQIPNAILYTSLIRNFFKHGRKED 524 (895)
Q Consensus 461 ~~~~~--------------~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 524 (895)
..... .-+|.. .++..+...|...|++++|+.+++++++..| ..+..|..-+..+-..|++.+
T Consensus 168 ~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htP-t~~ely~~KarilKh~G~~~~ 246 (517)
T PF12569_consen 168 EYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTP-TLVELYMTKARILKHAGDLKE 246 (517)
T ss_pred HHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHCCCHHH
Confidence 33211 012333 2446667778888888888888888888764 357778888888888888888
Q ss_pred HHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHH--------HHHHHHHHHhcCChHHHH
Q 002666 525 GHKIYKEMVQRGCSPDLMLLNTYMDCVFKAGETEKGRALFEEIKAQGFVPDVQS--------YSILIHGLVKAGFAHETD 596 (895)
Q Consensus 525 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--------~~~l~~~~~~~g~~~~A~ 596 (895)
|.+.++.....+ ..|..+-+.....+.+.|+.++|..++......+..|.... ..-...+|.+.|++..|.
T Consensus 247 Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~AL 325 (517)
T PF12569_consen 247 AAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLAL 325 (517)
T ss_pred HHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 888888887764 44555666666777788888888888887776653222111 122345666777777777
Q ss_pred HHHHHHHH
Q 002666 597 QLFYAMKK 604 (895)
Q Consensus 597 ~~~~~~~~ 604 (895)
+.|..+.+
T Consensus 326 k~~~~v~k 333 (517)
T PF12569_consen 326 KRFHAVLK 333 (517)
T ss_pred HHHHHHHH
Confidence 66665554
No 82
>PRK12370 invasion protein regulator; Provisional
Probab=99.41 E-value=1e-10 Score=129.86 Aligned_cols=183 Identities=13% Similarity=0.047 Sum_probs=93.6
Q ss_pred hhhHHHHHHHHHHCCCCCC-HHHHHHHHHHHHh---------cCCHhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCC
Q 002666 278 VDMAWKFFHEMKAQGVAPD-DVTYTSMIGVLCK---------SKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGK 347 (895)
Q Consensus 278 ~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 347 (895)
+++|..+|++..+. .|+ ...|..+..++.. .+++++|...++++++.++. +..++..++..+...|+
T Consensus 277 ~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 277 LQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN-NPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHccC
Confidence 45666666666654 232 3344444433321 22355666666666655544 55555555555555666
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 002666 348 FDEAFSLFERLKQKGCIPSVIAYNSLLTCLGKKGRVTEAMKIFEAMKKDARPNNTTYNVLIDMLCKAGNFEDALKFRDAM 427 (895)
Q Consensus 348 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 427 (895)
+++|...|+++.+.++ .+..++..+..++...|++++|+..+++..+..|.+...+..++..+...|++++|...++++
T Consensus 354 ~~~A~~~~~~Al~l~P-~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~ 432 (553)
T PRK12370 354 YIVGSLLFKQANLLSP-ISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDEL 432 (553)
T ss_pred HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHH
Confidence 6666666666555542 234455555555555566666666665555555554444444444444455555555555555
Q ss_pred HHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhhh
Q 002666 428 KEAGLFPNVMTVNIMVDRLCKAQKLDEAFSIFEGMDH 464 (895)
Q Consensus 428 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 464 (895)
.....+.+...+..+...+...|++++|...+.++..
T Consensus 433 l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~ 469 (553)
T PRK12370 433 RSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEIST 469 (553)
T ss_pred HHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh
Confidence 4432111223344444455555555555555555433
No 83
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.41 E-value=2.1e-11 Score=113.99 Aligned_cols=233 Identities=13% Similarity=0.098 Sum_probs=201.2
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHH-HHH
Q 002666 226 SVHLFTTLIRVFAREGRVDDALFLLDEMKNNAFSVDIVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGVAPDDVTYT-SMI 304 (895)
Q Consensus 226 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~-~l~ 304 (895)
+-.--..+.++|.+.|.+.+|...|+..++. .|.+.||..|..+|.+....+.|+.++.+-.+. .|..+||. .+.
T Consensus 222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~A 297 (478)
T KOG1129|consen 222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQA 297 (478)
T ss_pred hHHHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhH
Confidence 3344467889999999999999999998887 566777888999999999999999999998875 56667664 466
Q ss_pred HHHHhcCCHhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 002666 305 GVLCKSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLFERLKQKGCIPSVIAYNSLLTCLGKKGRVT 384 (895)
Q Consensus 305 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 384 (895)
+.+...++.++|.++|+.+++..+. ++.+...+...|.-.++++-|+.++.++.+.|.. +...|+.+.-+|.-.++++
T Consensus 298 Ri~eam~~~~~a~~lYk~vlk~~~~-nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D 375 (478)
T KOG1129|consen 298 RIHEAMEQQEDALQLYKLVLKLHPI-NVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQID 375 (478)
T ss_pred HHHHHHHhHHHHHHHHHHHHhcCCc-cceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchh
Confidence 7888999999999999999998776 8888888999999999999999999999999976 8889999999999999999
Q ss_pred HHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 002666 385 EAMKIFEAMKKDA---RPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEAGLFPNVMTVNIMVDRLCKAQKLDEAFSIFEG 461 (895)
Q Consensus 385 ~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 461 (895)
-++..|++..... ..-..+|..+......-|++.-|.+.|+-.+..+. .+...++.+.-.-.+.|++++|..++..
T Consensus 376 ~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~-~h~ealnNLavL~~r~G~i~~Arsll~~ 454 (478)
T KOG1129|consen 376 LVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDA-QHGEALNNLAVLAARSGDILGARSLLNA 454 (478)
T ss_pred hhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCc-chHHHHHhHHHHHhhcCchHHHHHHHHH
Confidence 9999999887532 33456899999999999999999999999987652 3567888888888999999999999998
Q ss_pred hhhC
Q 002666 462 MDHK 465 (895)
Q Consensus 462 ~~~~ 465 (895)
....
T Consensus 455 A~s~ 458 (478)
T KOG1129|consen 455 AKSV 458 (478)
T ss_pred hhhh
Confidence 7765
No 84
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.41 E-value=9e-09 Score=109.74 Aligned_cols=291 Identities=14% Similarity=0.135 Sum_probs=164.6
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcC----
Q 002666 201 ALATVRESNLMLNLFHQMQELGYEVSVHLFTTLIRVFAREGRVDDALFLLDEMKNNAFSVDIVLYNVCIDCFGKVG---- 276 (895)
Q Consensus 201 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---- 276 (895)
.+...|++++|++.+..-... +..........+..+.+.|+.++|..++..+++.+ +.+...|..+..+..-..
T Consensus 13 il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~~~~ 90 (517)
T PF12569_consen 13 ILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQLSD 90 (517)
T ss_pred HHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhccccc
Confidence 344556666666665543332 22233444555666666666666666666666654 233333444444442221
Q ss_pred -ChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-hHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCCHHHHHHH
Q 002666 277 -KVDMAWKFFHEMKAQGVAPDDVTYTSMIGVLCKSKRL-EEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSL 354 (895)
Q Consensus 277 -~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 354 (895)
..+....+++++...- |.......+.-.+..-..+ ..+..++..++..|++ .+++.|-..|.......-..++
T Consensus 91 ~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~l 165 (517)
T PF12569_consen 91 EDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIESL 165 (517)
T ss_pred ccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHHH
Confidence 3445555666655542 3322222222122221222 2333444555555543 2444444445544444444444
Q ss_pred HHHHHhc----C----------CCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 002666 355 FERLKQK----G----------CIPSV--IAYNSLLTCLGKKGRVTEAMKIFEAMKKDARPNNTTYNVLIDMLCKAGNFE 418 (895)
Q Consensus 355 ~~~~~~~----~----------~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 418 (895)
+...... + -+|.. .++..+...|...|++++|+++++......|..+..|..-+.++-+.|+++
T Consensus 166 ~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~ 245 (517)
T PF12569_consen 166 VEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLK 245 (517)
T ss_pred HHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHH
Confidence 4443321 1 12333 345666777778888888888888888877888888888888888888888
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChh------hH--HHHHHHHhhcCCHHHH
Q 002666 419 DALKFRDAMKEAGLFPNVMTVNIMVDRLCKAQKLDEAFSIFEGMDHKTCTPDAV------TF--CSLIDGLGKNGRVDDA 490 (895)
Q Consensus 419 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~------~~--~~l~~~~~~~g~~~~A 490 (895)
+|.+.++.....+. .|...-+..+..+.+.|++++|..++......+..|... .| ...+.+|.+.|++..|
T Consensus 246 ~Aa~~~~~Ar~LD~-~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~A 324 (517)
T PF12569_consen 246 EAAEAMDEARELDL-ADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLA 324 (517)
T ss_pred HHHHHHHHHHhCCh-hhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 88888888877653 355555566677778888888888887776665322211 11 3346677788888888
Q ss_pred HHHHHHHHh
Q 002666 491 YKFYEKMLD 499 (895)
Q Consensus 491 ~~~~~~~~~ 499 (895)
++.|..+.+
T Consensus 325 Lk~~~~v~k 333 (517)
T PF12569_consen 325 LKRFHAVLK 333 (517)
T ss_pred HHHHHHHHH
Confidence 777766654
No 85
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.38 E-value=2.3e-10 Score=113.51 Aligned_cols=197 Identities=16% Similarity=0.161 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 002666 227 VHLFTTLIRVFAREGRVDDALFLLDEMKNNAFSVDIVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGVAPDDVTYTSMIGV 306 (895)
Q Consensus 227 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~ 306 (895)
...+..++..+...|++++|...+++..+.. +.+...+..++..+...|++++|.+.+++..+... .+...+..++..
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP-NNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHH
Confidence 3444555555555555555555555554432 22334444445555555555555555555544321 133344444444
Q ss_pred HHhcCCHhHHHHHHHHHhhCCCCC-CHHhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 002666 307 LCKSKRLEEAVAMFEQMDRNREVP-CAYAYNTMIMGYGSVGKFDEAFSLFERLKQKGCIPSVIAYNSLLTCLGKKGRVTE 385 (895)
Q Consensus 307 ~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 385 (895)
+...|++++|.+.++++......+ ....+..++..+...|++++|...+++..+... .+...+..+...+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDP-QRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CChHHHHHHHHHHHHcCCHHH
Confidence 555555555555555544321111 122333344444444444444444444444321 123334444444444444444
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 002666 386 AMKIFEAMKKDARPNNTTYNVLIDMLCKAGNFEDALKFRDA 426 (895)
Q Consensus 386 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 426 (895)
|...+++.....+.+...+..++..+...|+.++|..+.+.
T Consensus 188 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 228 (234)
T TIGR02521 188 ARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQ 228 (234)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 44444444333333333333344444444444444443333
No 86
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.35 E-value=6.7e-10 Score=99.54 Aligned_cols=197 Identities=15% Similarity=0.059 Sum_probs=164.2
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 002666 683 IYSSLIDGFGKVGRIDEAYLIMEELMQKGLTP-NAYTWNCLLDALVKAEEISEAFVCFQSMKDLKCTPNHVTYSIIINGL 761 (895)
Q Consensus 683 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 761 (895)
+...|...|...|++..|.+-++++++. .| +..+|..+...|-+.|+.+.|.+.|++.++.. +.+-...|.....+
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FL 113 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHH
Confidence 4456777899999999999999999984 35 67788889999999999999999999999844 33446778888999
Q ss_pred HhcCCHhHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHH
Q 002666 762 CRVRKFNKAFVFWQEMQKQGFK-PNTITYTTMISGLAKAGNITEANGLFERFKENGGVP-DSACYNAMMEGLSNANRAMD 839 (895)
Q Consensus 762 ~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~ 839 (895)
|..|++++|...|+++.....- -...+|..++.+..+.|+.+.|.+.|++.++ ..| .+.+...++...++.|++-.
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~--~dp~~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE--LDPQFPPALLELARLHYKAGDYAP 191 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH--hCcCCChHHHHHHHHHHhcccchH
Confidence 9999999999999999876222 2357899999999999999999999999998 666 57788899999999999999
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 002666 840 AYTLFEETRRKGFNIHTKTCVILLDALHKAECLEQAAIVGAVLRET 885 (895)
Q Consensus 840 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~l~~~ 885 (895)
|.-+++.....+ +++.......++.-...|+-..|.+....+...
T Consensus 192 Ar~~~~~~~~~~-~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 192 ARLYLERYQQRG-GAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred HHHHHHHHHhcc-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 999999988876 588888888888888899999988866666543
No 87
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=6.8e-09 Score=104.89 Aligned_cols=225 Identities=16% Similarity=0.131 Sum_probs=127.9
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC------HHhHHHHHHH
Q 002666 547 YMDCVFKAGETEKGRALFEEIKAQGFVPDVQSYSILIHGLVKAGFAHETDQLFYAMKKQGCVLD------TRAYNTVVDG 620 (895)
Q Consensus 547 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~~l~~~ 620 (895)
+.....+..+++.|.+.+....+.. .+..-++....+|...|.+.+.........+.|...- ...+..+..+
T Consensus 230 lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a 307 (539)
T KOG0548|consen 230 LGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNA 307 (539)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhh
Confidence 3344444455555555555544442 2333344444455555555444444444433321100 1112224446
Q ss_pred HHccCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHH
Q 002666 621 FCKSGKVNKAYQLLEEMKTKGHYPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNTVIYSSLIDGFGKVGRIDEA 700 (895)
Q Consensus 621 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 700 (895)
|.+.++++.|+.+|.+....-..|+. ..+....+++........-.+... ..-...-...+.+.|++..|
T Consensus 308 ~~k~~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~~pe~-A~e~r~kGne~Fk~gdy~~A 377 (539)
T KOG0548|consen 308 YTKREDYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAYINPEK-AEEEREKGNEAFKKGDYPEA 377 (539)
T ss_pred hhhHHhHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhhChhH-HHHHHHHHHHHHhccCHHHH
Confidence 66667788888888876654333222 222333444444444333322111 11122235667778888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 002666 701 YLIMEELMQKGLTPNAYTWNCLLDALVKAEEISEAFVCFQSMKDLKCTPNHVTYSIIINGLCRVRKFNKAFVFWQEMQKQ 780 (895)
Q Consensus 701 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 780 (895)
+..|.++++.. +.|...|.....+|.+.|++..|+.-.+..++.+ ++....|..-+.++....+|++|.+.|++.++.
T Consensus 378 v~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale~ 455 (539)
T KOG0548|consen 378 VKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALEL 455 (539)
T ss_pred HHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 88888888854 3377888888888888888888888888888753 334455666666777778888888888888873
Q ss_pred CCCCCHH
Q 002666 781 GFKPNTI 787 (895)
Q Consensus 781 ~~~p~~~ 787 (895)
.|+..
T Consensus 456 --dp~~~ 460 (539)
T KOG0548|consen 456 --DPSNA 460 (539)
T ss_pred --CchhH
Confidence 45543
No 88
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.31 E-value=7.9e-09 Score=95.78 Aligned_cols=292 Identities=12% Similarity=0.088 Sum_probs=166.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHH-HHHHHHHH
Q 002666 160 CIELVVSCVKSKMLREAFDIIQTMRKFKFRPAFTAYTTLIGALATVRESNLMLNLFHQMQELGYEVSVHLF-TTLIRVFA 238 (895)
Q Consensus 160 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~ 238 (895)
+...+-.+++..++.+|++++..-.+.. +.+....+.+..+|-...++..|.++|+++...- |...-| ..-+..+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~--P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLH--PELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--hHHHHHHHHHHHHHH
Confidence 4455555666777777777776665553 2355666677777777777777777777776642 222222 22345556
Q ss_pred hcCChhHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHH
Q 002666 239 REGRVDDALFLLDEMKNNAFSVDIVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGVAPDDVTYTSMIGVLCKSKRLEEAVA 318 (895)
Q Consensus 239 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~ 318 (895)
+.+.+.+|+.+...|.... ..-......-.......+++..+..+.++....| +..+.+.......+.|+++.|.+
T Consensus 90 ~A~i~ADALrV~~~~~D~~-~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvq 165 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDNP-ALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQ 165 (459)
T ss_pred HhcccHHHHHHHHHhcCCH-HHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHH
Confidence 7777777777777665421 0001111111122335566777777776655322 44555566666677777777777
Q ss_pred HHHHHhhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCC-------------CH---------------HHH
Q 002666 319 MFEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLFERLKQKGCIP-------------SV---------------IAY 370 (895)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-------------~~---------------~~~ 370 (895)
-|+...+.+.-....+|+. ..++.+.|+++.|+++..+++++|+.. |+ .++
T Consensus 166 kFqaAlqvsGyqpllAYni-ALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAf 244 (459)
T KOG4340|consen 166 KFQAALQVSGYQPLLAYNL-ALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAF 244 (459)
T ss_pred HHHHHHhhcCCCchhHHHH-HHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHh
Confidence 7777776655434455553 334556677777777777777766431 11 123
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhc--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 002666 371 NSLLTCLGKKGRVTEAMKIFEAMKK--DARPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEAGLFPNVMTVNIMVDRLCK 448 (895)
Q Consensus 371 ~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 448 (895)
|.-...+.+.|+++.|.+.+..|.- ....|+.+...++-.-.. +++.+..+-+.-+++... -...|+..++-.||+
T Consensus 245 NLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~~-~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCK 322 (459)
T KOG4340|consen 245 NLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNMD-ARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCK 322 (459)
T ss_pred hhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhccc-CCccccHHHHHHHHhcCC-CChHHHHHHHHHHhh
Confidence 3333445567777777777766643 234455665555443332 334444444444444332 234566667777777
Q ss_pred cCChhHHHHHHHH
Q 002666 449 AQKLDEAFSIFEG 461 (895)
Q Consensus 449 ~g~~~~A~~~~~~ 461 (895)
..-++.|.+++.+
T Consensus 323 Neyf~lAADvLAE 335 (459)
T KOG4340|consen 323 NEYFDLAADVLAE 335 (459)
T ss_pred hHHHhHHHHHHhh
Confidence 7777777776654
No 89
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.31 E-value=7.4e-08 Score=91.36 Aligned_cols=315 Identities=14% Similarity=0.155 Sum_probs=179.1
Q ss_pred ChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhH-HHHH
Q 002666 470 DAVTFCSLIDGLGKNGRVDDAYKFYEKMLDTDQIPNAILYTSLIRNFFKHGRKEDGHKIYKEMVQRGCSPDLMLL-NTYM 548 (895)
Q Consensus 470 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~l~ 548 (895)
++.-...++..+...|++.+|+..|..+++.++ .+-.++..-+..|...|+..-|+.-+...++. +||-... ..-.
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~dp-~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg 113 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGDP-NNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRG 113 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCc-hhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhc
Confidence 344455677777888888888888888887654 35556666677788888888888888877774 6664332 2233
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChH
Q 002666 549 DCVFKAGETEKGRALFEEIKAQGFVPDVQSYSILIHGLVKAGFAHETDQLFYAMKKQGCVLDTRAYNTVVDGFCKSGKVN 628 (895)
Q Consensus 549 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 628 (895)
..+.++|.++.|..-|+.++... |+..+ ..++..-+....+ .......+..+...|+..
T Consensus 114 ~vllK~Gele~A~~DF~~vl~~~--~s~~~-------------~~eaqskl~~~~e------~~~l~~ql~s~~~~GD~~ 172 (504)
T KOG0624|consen 114 VVLLKQGELEQAEADFDQVLQHE--PSNGL-------------VLEAQSKLALIQE------HWVLVQQLKSASGSGDCQ 172 (504)
T ss_pred hhhhhcccHHHHHHHHHHHHhcC--CCcch-------------hHHHHHHHHhHHH------HHHHHHHHHHHhcCCchh
Confidence 46678888888888888887763 32111 1111111100000 011122233344556666
Q ss_pred HHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 002666 629 KAYQLLEEMKTKGHYPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNTVIYSSLIDGFGKVGRIDEAYLIMEELM 708 (895)
Q Consensus 629 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 708 (895)
.|+.+..++++..+- +...+..-..+|...|++..|+.-++.+.+.. ..+...+..+...+...|+.+.++...++.+
T Consensus 173 ~ai~~i~~llEi~~W-da~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECL 250 (504)
T KOG0624|consen 173 NAIEMITHLLEIQPW-DASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECL 250 (504)
T ss_pred hHHHHHHHHHhcCcc-hhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 666666666654221 44455555556666666666666666555543 2233444445555566666666666666666
Q ss_pred HCCCCCCHHH----HHHH---------HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHH---HHHHHHHhcCCHhHHHH
Q 002666 709 QKGLTPNAYT----WNCL---------LDALVKAEEISEAFVCFQSMKDLKCTPNHVTYS---IIINGLCRVRKFNKAFV 772 (895)
Q Consensus 709 ~~~~~p~~~~----~~~l---------~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~---~l~~~~~~~g~~~~A~~ 772 (895)
+ +.||... |..| +......+++.++++..+.+.+.........|+ .+-.++...+++.+|+.
T Consensus 251 K--ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiq 328 (504)
T KOG0624|consen 251 K--LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQ 328 (504)
T ss_pred c--cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHH
Confidence 5 3343221 1111 112234556666666666666633221222222 34455566677777777
Q ss_pred HHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002666 773 FWQEMQKQGFKPN-TITYTTMISGLAKAGNITEANGLFERFKE 814 (895)
Q Consensus 773 ~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 814 (895)
...+.++ +.|| ..++..-..+|.-...++.|+.-|+++.+
T Consensus 329 qC~evL~--~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 329 QCKEVLD--IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALE 369 (504)
T ss_pred HHHHHHh--cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 7777765 4555 55666666667666777777777777766
No 90
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=8e-09 Score=104.38 Aligned_cols=237 Identities=14% Similarity=0.084 Sum_probs=141.9
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHH-------HHHH
Q 002666 614 YNTVVDGFCKSGKVNKAYQLLEEMKTKGHYPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNTV-------IYSS 686 (895)
Q Consensus 614 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-------~~~~ 686 (895)
...++++..+..++..|++-+...++.. -+..-++....+|...|.+.++........+.|.. ... .+..
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r 303 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALAR 303 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHH
Confidence 3445555666666666666666666553 23444445555666666666666665555554421 111 1222
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHH-HHHHHHHHHhcC
Q 002666 687 LIDGFGKVGRIDEAYLIMEELMQKGLTPNAYTWNCLLDALVKAEEISEAFVCFQSMKDLKCTPNHVT-YSIIINGLCRVR 765 (895)
Q Consensus 687 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g 765 (895)
+..+|.+.++++.|+..|.+.+...-.|+. ..+....+++....+...- +.|.... --.-++.+.+.|
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~g 372 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKG 372 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhcc
Confidence 344666677788888888877664333222 1222344555555544443 2243311 112356677778
Q ss_pred CHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 002666 766 KFNKAFVFWQEMQKQGFKPNTITYTTMISGLAKAGNITEANGLFERFKENGGVP-DSACYNAMMEGLSNANRAMDAYTLF 844 (895)
Q Consensus 766 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~ 844 (895)
+|.+|+..|.+++... +.|...|.....+|.+.|.+..|++-.+..++ ..| ....|..-+.++....+|++|.+.|
T Consensus 373 dy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ie--L~p~~~kgy~RKg~al~~mk~ydkAleay 449 (539)
T KOG0548|consen 373 DYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIE--LDPNFIKAYLRKGAALRAMKEYDKALEAY 449 (539)
T ss_pred CHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888877753 44566777777788888888888887777777 455 3556666677777777888888888
Q ss_pred HHHHHCCCCCCHhhHHHHHHHHHh
Q 002666 845 EETRRKGFNIHTKTCVILLDALHK 868 (895)
Q Consensus 845 ~~~~~~~~~~~~~~~~~l~~~~~~ 868 (895)
++.++.+ |.+......+.+++..
T Consensus 450 ~eale~d-p~~~e~~~~~~rc~~a 472 (539)
T KOG0548|consen 450 QEALELD-PSNAEAIDGYRRCVEA 472 (539)
T ss_pred HHHHhcC-chhHHHHHHHHHHHHH
Confidence 8877774 5555555555555553
No 91
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.30 E-value=1.3e-09 Score=114.40 Aligned_cols=236 Identities=20% Similarity=0.195 Sum_probs=121.6
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHc-------CCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC-----CC-C
Q 002666 193 TAYTTLIGALATVRESNLMLNLFHQMQEL-------GYEVSVHLFTTLIRVFAREGRVDDALFLLDEMKNN-----AF-S 259 (895)
Q Consensus 193 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~-~ 259 (895)
.+...+...|...|+++.|..++++..+. ..+.-....+.++..|...+++++|..+|++++.. |. .
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34444666666666666666666665543 11111223334566666666666666666666432 11 1
Q ss_pred CC-hHhHHHHHHHHHhcCChhhHHHHHHHHHHC-----CCC-CCHH-HHHHHHHHHHhcCCHhHHHHHHHHHhhC---CC
Q 002666 260 VD-IVLYNVCIDCFGKVGKVDMAWKFFHEMKAQ-----GVA-PDDV-TYTSMIGVLCKSKRLEEAVAMFEQMDRN---RE 328 (895)
Q Consensus 260 ~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----g~~-p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~ 328 (895)
|. ..+++.|...|++.|++++|..++++..+. |.. |... .++.++..++..+++++|..++....+. -+
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 11 234555666666666666666666555432 111 1111 3445555666666666666666654321 11
Q ss_pred CC----CHHhHHHHHHHHHccCCHHHHHHHHHHHHhcC----C---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc--
Q 002666 329 VP----CAYAYNTMIMGYGSVGKFDEAFSLFERLKQKG----C---IPSVIAYNSLLTCLGKKGRVTEAMKIFEAMKK-- 395 (895)
Q Consensus 329 ~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-- 395 (895)
.+ -..+++.|+..|...|++++|.+++++++... . .-....++.|...|.+.+++++|.++|.+...
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 11 13456666666666666666666666655431 0 01123445555556666666655555553321
Q ss_pred -----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002666 396 -----DARPNNTTYNVLIDMLCKAGNFEDALKFRDAMK 428 (895)
Q Consensus 396 -----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 428 (895)
..|....+|..|+..|...|+++.|.++.+.+.
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 122333455555555555555555555554443
No 92
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.29 E-value=1.9e-09 Score=109.17 Aligned_cols=232 Identities=14% Similarity=0.009 Sum_probs=164.6
Q ss_pred cCChHHHHHHHHHHHHCCC-CC--CHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHH
Q 002666 624 SGKVNKAYQLLEEMKTKGH-YP--TVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNTVIYSSLIDGFGKVGRIDEA 700 (895)
Q Consensus 624 ~g~~~~A~~~~~~~~~~~~-~p--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 700 (895)
.+..+.++..+.+++.... .| ....|..+...|...|+.++|...|+++++.. +.+...|+.+...+...|++++|
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 3566778888888875422 22 23457777888899999999999999999875 45788999999999999999999
Q ss_pred HHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 002666 701 YLIMEELMQKGLTP-NAYTWNCLLDALVKAEEISEAFVCFQSMKDLKCTPNHVTYSIIINGLCRVRKFNKAFVFWQEMQK 779 (895)
Q Consensus 701 ~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 779 (895)
...|++.++ +.| +..++..++.++...|++++|++.|++..+.. |+..........+...+++++|++.+.+...
T Consensus 118 ~~~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~ 193 (296)
T PRK11189 118 YEAFDSVLE--LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYE 193 (296)
T ss_pred HHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 999999998 445 57788889999999999999999999999844 5433222222234456789999999977664
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---C--CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 002666 780 QGFKPNTITYTTMISGLAKAGNITEANGLFERFKEN---G--GVP-DSACYNAMMEGLSNANRAMDAYTLFEETRRKGFN 853 (895)
Q Consensus 780 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~--~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 853 (895)
. ..|+. |. ........|+..++ +.++.+.+. . ..| ...+|..++..+.+.|++++|+..|+++++.+ +
T Consensus 194 ~-~~~~~--~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~-~ 267 (296)
T PRK11189 194 K-LDKEQ--WG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN-V 267 (296)
T ss_pred h-CCccc--cH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-C
Confidence 3 23332 22 12233345666554 345555432 0 122 34689999999999999999999999999886 4
Q ss_pred CCHhhHH-HHHHHH
Q 002666 854 IHTKTCV-ILLDAL 866 (895)
Q Consensus 854 ~~~~~~~-~l~~~~ 866 (895)
++...+. .++...
T Consensus 268 ~~~~e~~~~~~e~~ 281 (296)
T PRK11189 268 YNFVEHRYALLELA 281 (296)
T ss_pred chHHHHHHHHHHHH
Confidence 4544433 344333
No 93
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.29 E-value=2.6e-07 Score=87.72 Aligned_cols=329 Identities=12% Similarity=0.084 Sum_probs=175.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHH-HHHH
Q 002666 366 SVIAYNSLLTCLGKKGRVTEAMKIFEAMKKDARPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEAGLFPNVMTVN-IMVD 444 (895)
Q Consensus 366 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~l~~ 444 (895)
++.-...+...+...|++..|+..|.......|.+-.++..-+..|...|+..-|+.-+.+.++. +||...-. .-..
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~ 114 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGV 114 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhch
Confidence 34445556666777777777777777777777777777777777777777777777777777663 45533211 1122
Q ss_pred HHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHhcCCHHH
Q 002666 445 RLCKAQKLDEAFSIFEGMDHKTCTPDAVTFCSLIDGLGKNGRVDDAYKFYEKMLDTDQIPNAILYTSLIRNFFKHGRKED 524 (895)
Q Consensus 445 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 524 (895)
.+.+.|.++.|..-|+.++..... ..+ ...++.+.-..++- ......+..
T Consensus 115 vllK~Gele~A~~DF~~vl~~~~s--~~~---~~eaqskl~~~~e~----------------~~l~~ql~s--------- 164 (504)
T KOG0624|consen 115 VLLKQGELEQAEADFDQVLQHEPS--NGL---VLEAQSKLALIQEH----------------WVLVQQLKS--------- 164 (504)
T ss_pred hhhhcccHHHHHHHHHHHHhcCCC--cch---hHHHHHHHHhHHHH----------------HHHHHHHHH---------
Confidence 344445555555555444443211 000 00001000000000 001111222
Q ss_pred HHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 002666 525 GHKIYKEMVQRGCSPDLMLLNTYMDCVFKAGETEKGRALFEEIKAQGFVPDVQSYSILIHGLVKAGFAHETDQLFYAMKK 604 (895)
Q Consensus 525 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 604 (895)
+...|+...|+.....+++.. +.|...+..-..+|...|.+..|..-++...+
T Consensus 165 --------------------------~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~ask 217 (504)
T KOG0624|consen 165 --------------------------ASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASK 217 (504)
T ss_pred --------------------------HhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 233444444444444444432 23444555555555556666665555555544
Q ss_pred cCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHH
Q 002666 605 QGCVLDTRAYNTVVDGFCKSGKVNKAYQLLEEMKTKGHYPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNTVIY 684 (895)
Q Consensus 605 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 684 (895)
.. ..++..+..+...+...|+.+.++...++.++. .|+....... | +++.+..+.++.|.
T Consensus 218 Ls-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~---Y---KklkKv~K~les~e----------- 277 (504)
T KOG0624|consen 218 LS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPF---Y---KKLKKVVKSLESAE----------- 277 (504)
T ss_pred cc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHH---H---HHHHHHHHHHHHHH-----------
Confidence 32 334555555666666777777777777776664 3444322111 1 11122222222221
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHH---HHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-HHHHHHHHHH
Q 002666 685 SSLIDGFGKVGRIDEAYLIMEELMQKGLTPNAYTWN---CLLDALVKAEEISEAFVCFQSMKDLKCTPN-HVTYSIIING 760 (895)
Q Consensus 685 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~---~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~ 760 (895)
.....+++.++++..+..++.........++ .+-.++...|++.+|++...++++ +.|+ ..++.--..+
T Consensus 278 -----~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~--~d~~dv~~l~dRAeA 350 (504)
T KOG0624|consen 278 -----QAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD--IDPDDVQVLCDRAEA 350 (504)
T ss_pred -----HHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh--cCchHHHHHHHHHHH
Confidence 2234566777777777777743332233333 344556667778888888888877 3344 6677777777
Q ss_pred HHhcCCHhHHHHHHHHHHHC
Q 002666 761 LCRVRKFNKAFVFWQEMQKQ 780 (895)
Q Consensus 761 ~~~~g~~~~A~~~~~~~~~~ 780 (895)
|.....|++|+.-|+.+.+.
T Consensus 351 ~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 351 YLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred HhhhHHHHHHHHHHHHHHhc
Confidence 77777888888888887764
No 94
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.28 E-value=2.9e-09 Score=95.60 Aligned_cols=192 Identities=13% Similarity=0.011 Sum_probs=102.3
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccC
Q 002666 267 VCIDCFGKVGKVDMAWKFFHEMKAQGVAPDDVTYTSMIGVLCKSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVG 346 (895)
Q Consensus 267 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 346 (895)
-+.-.|...|++..|.+-+++.++.... +..+|..+...|.+.|..+.|.+.|++.+...+. +..+.|..+..+|.+|
T Consensus 40 qLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC~qg 117 (250)
T COG3063 40 QLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLCAQG 117 (250)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHHhCC
Confidence 3444555555555555555555554211 3335555555555555555555555555555544 5555555555555555
Q ss_pred CHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 002666 347 KFDEAFSLFERLKQKGCIP-SVIAYNSLLTCLGKKGRVTEAMKIFEAMKKDARPNNTTYNVLIDMLCKAGNFEDALKFRD 425 (895)
Q Consensus 347 ~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 425 (895)
++++|...|++....-..+ -..+|..++-+..+.|+.+.|...|++.....|..+.+...+.....+.|++-.|..+++
T Consensus 118 ~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~ 197 (250)
T COG3063 118 RPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLE 197 (250)
T ss_pred ChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHH
Confidence 5555555555555432111 133555555555555666666666665555555555555556666666666666665555
Q ss_pred HHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 002666 426 AMKEAGLFPNVMTVNIMVDRLCKAQKLDEAFSIFEG 461 (895)
Q Consensus 426 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 461 (895)
.....+. ++.......|+.--..|+.+.+-+.=..
T Consensus 198 ~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~q 232 (250)
T COG3063 198 RYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQ 232 (250)
T ss_pred HHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 5555443 4444444444444445555544444333
No 95
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.24 E-value=6.1e-09 Score=105.51 Aligned_cols=221 Identities=15% Similarity=0.025 Sum_probs=121.7
Q ss_pred hcCChhhHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCCHHH
Q 002666 274 KVGKVDMAWKFFHEMKAQG-VAPD--DVTYTSMIGVLCKSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFDE 350 (895)
Q Consensus 274 ~~g~~~~A~~~~~~~~~~g-~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 350 (895)
..+..+.++..+.+++... ..|+ ...|..++..|...|++++|...|++.++..+. +..+|+.++..+...|++++
T Consensus 38 ~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~~ 116 (296)
T PRK11189 38 PTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNFDA 116 (296)
T ss_pred CchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHH
Confidence 3455666777777766532 1222 234666666777777777777777777776654 66677777777777777777
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 002666 351 AFSLFERLKQKGCIPSVIAYNSLLTCLGKKGRVTEAMKIFEAMKKDARPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEA 430 (895)
Q Consensus 351 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 430 (895)
|...|++..+..+. +..++..++.++...|++++|++.|+...+..|.+.. ...........++.++|...+.+....
T Consensus 117 A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~-~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 117 AYEAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPY-RALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 77777777765422 4556666666677777777777777776666555542 111112233455667777766554432
Q ss_pred CCCCChhhHHHHHHHHHhcCChhHHHHHHHHhhhC---CC---CCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCC
Q 002666 431 GLFPNVMTVNIMVDRLCKAQKLDEAFSIFEGMDHK---TC---TPDAVTFCSLIDGLGKNGRVDDAYKFYEKMLDTDQ 502 (895)
Q Consensus 431 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 502 (895)
. .|+. |. ........|+...+ ..++.+.+. .. +....+|..++..+.+.|++++|+..|++++..++
T Consensus 195 ~-~~~~--~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 195 L-DKEQ--WG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred C-Cccc--cH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 1 1221 11 11222234444333 233332211 00 01223455566666666666666666666665543
No 96
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.24 E-value=2.4e-08 Score=92.65 Aligned_cols=290 Identities=16% Similarity=0.133 Sum_probs=134.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHH-HHHHHHhcC
Q 002666 233 LIRVFAREGRVDDALFLLDEMKNNAFSVDIVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGVAPDDVTYTS-MIGVLCKSK 311 (895)
Q Consensus 233 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~-l~~~~~~~g 311 (895)
++..+.+..++.+|++++....+.. +.+....+.+..+|....++..|...++++-.. .|...-|.. -...+.+.+
T Consensus 16 viy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A~ 92 (459)
T KOG4340|consen 16 VVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYKAC 92 (459)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHhc
Confidence 3333444444455554444444332 113333444444444555555555555444432 233332221 123344445
Q ss_pred CHhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 002666 312 RLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLFERLKQKGCIPSVIAYNSLLTCLGKKGRVTEAMKIFE 391 (895)
Q Consensus 312 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 391 (895)
.+..|+.+...|.... ..-..+...-.......+++..+..+.++....| +..+.+.......+.|+++.|.+-|+
T Consensus 93 i~ADALrV~~~~~D~~-~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvqkFq 168 (459)
T KOG4340|consen 93 IYADALRVAFLLLDNP-ALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQKFQ 168 (459)
T ss_pred ccHHHHHHHHHhcCCH-HHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHHHHH
Confidence 5555555544443320 0000111111111223444444444444443222 33333344444445555555555555
Q ss_pred HHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-------------C---------------hhhHHHHH
Q 002666 392 AMKKDARPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEAGLFP-------------N---------------VMTVNIMV 443 (895)
Q Consensus 392 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-------------~---------------~~~~~~l~ 443 (895)
...+-..-++..-..++-+..+.|+++.|++...++.++|+.. | ...+|.-.
T Consensus 169 aAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKa 248 (459)
T KOG4340|consen 169 AALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKA 248 (459)
T ss_pred HHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhh
Confidence 5444333333322333333444455555555555555444221 1 11122233
Q ss_pred HHHHhcCChhHHHHHHHHhhhCC-CCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHhcCCH
Q 002666 444 DRLCKAQKLDEAFSIFEGMDHKT-CTPDAVTFCSLIDGLGKNGRVDDAYKFYEKMLDTDQIPNAILYTSLIRNFFKHGRK 522 (895)
Q Consensus 444 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 522 (895)
..+.+.++++.|.+.+-.|..+. ...|++|...+.-. -..+++.+..+-+..++...| ....++..++-.||++.-+
T Consensus 249 AIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf 326 (459)
T KOG4340|consen 249 AIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYF 326 (459)
T ss_pred hhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHH
Confidence 34556777888887777775442 33456665554322 223455566666666666655 3456777777788888777
Q ss_pred HHHHHHHHH
Q 002666 523 EDGHKIYKE 531 (895)
Q Consensus 523 ~~A~~~~~~ 531 (895)
+.|..++.+
T Consensus 327 ~lAADvLAE 335 (459)
T KOG4340|consen 327 DLAADVLAE 335 (459)
T ss_pred hHHHHHHhh
Confidence 777776654
No 97
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.17 E-value=1.3e-07 Score=100.40 Aligned_cols=202 Identities=8% Similarity=-0.035 Sum_probs=96.3
Q ss_pred CCCHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCC-CCh-hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHH
Q 002666 119 AHSLEAYNSLLMVMAVSKNFEPLEEILGEMSLAGIG-PTN-NTCIELVVSCVKSKMLREAFDIIQTMRKFKFRPAFTAYT 196 (895)
Q Consensus 119 ~~~~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~-~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 196 (895)
|..+.+|..++..+...++.+.+...+......... .+. .........+...|++++|..++++..+.. +.+...+.
T Consensus 3 p~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~ 81 (355)
T cd05804 3 PDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALK 81 (355)
T ss_pred CccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHH
Confidence 445666777777777777777766555554433211 111 112222333445666666666666655442 22222222
Q ss_pred HHHHHHHh----cCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHhHHHHHHHH
Q 002666 197 TLIGALAT----VRESNLMLNLFHQMQELGYEVSVHLFTTLIRVFAREGRVDDALFLLDEMKNNAFSVDIVLYNVCIDCF 272 (895)
Q Consensus 197 ~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 272 (895)
. ...+.. .+....+.+.+... ....+........+...+...|++++|...+++..+.. +.+...+..+..++
T Consensus 82 ~-~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~ 158 (355)
T cd05804 82 L-HLGAFGLGDFSGMRDHVARVLPLW-APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVL 158 (355)
T ss_pred H-hHHHHHhcccccCchhHHHHHhcc-CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHH
Confidence 1 111111 23333333333321 11112222333444455556666666666666665553 33344555556666
Q ss_pred HhcCChhhHHHHHHHHHHCCCC-CCH--HHHHHHHHHHHhcCCHhHHHHHHHHHh
Q 002666 273 GKVGKVDMAWKFFHEMKAQGVA-PDD--VTYTSMIGVLCKSKRLEEAVAMFEQMD 324 (895)
Q Consensus 273 ~~~g~~~~A~~~~~~~~~~g~~-p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~ 324 (895)
...|++++|...+++....... |+. ..|..+...+...|++++|+.++++..
T Consensus 159 ~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 159 EMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHI 213 (355)
T ss_pred HHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 6666666666666655543211 111 123345555556666666666666654
No 98
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=99.17 E-value=1.1e-05 Score=87.09 Aligned_cols=223 Identities=17% Similarity=0.164 Sum_probs=141.9
Q ss_pred hcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhhHHH
Q 002666 204 TVRESNLMLNLFHQMQELGYEVSVHLFTTLIRVFAREGRVDDALFLLDEMKNNAFSVDIVLYNVCIDCFGKVGKVDMAWK 283 (895)
Q Consensus 204 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 283 (895)
..+++..|....+++... +|....+-..=+-.+.+.|+.++|..+++.....+ ..|..|...+-.+|...|+.++|..
T Consensus 21 d~~qfkkal~~~~kllkk-~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~-~~D~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKK-HPNALYAKVLKALSLFRLGKGDEALKLLEALYGLK-GTDDLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred hhHHHHHHHHHHHHHHHH-CCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCC-CCchHHHHHHHHHHHHHhhhhHHHH
Confidence 456777888777777664 22222222222334568888999988888776654 3378888888888888899999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHcc-CC---------HHHHHH
Q 002666 284 FFHEMKAQGVAPDDVTYTSMIGVLCKSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSV-GK---------FDEAFS 353 (895)
Q Consensus 284 ~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~---------~~~A~~ 353 (895)
+|++.... .|+......+..+|.+.++|.+-.+.--++-+.-+. +.+.+=.++..+... .. ..-|.+
T Consensus 99 ~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk-~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~ 175 (932)
T KOG2053|consen 99 LYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPK-RAYYFWSVISLILQSIFSENELLDPILLALAEK 175 (932)
T ss_pred HHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-ccchHHHHHHHHHHhccCCcccccchhHHHHHH
Confidence 99888775 566777777788888888876544444444333333 333332333332211 11 334666
Q ss_pred HHHHHHhcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHH-HH-hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 002666 354 LFERLKQKG-CIPSVIAYNSLLTCLGKKGRVTEAMKIFE-AM-KKDARPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEA 430 (895)
Q Consensus 354 ~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~-~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 430 (895)
.++.+.+.+ ...+..-.......+...|++++|.+++. .. .+..+.+...-+.-+..+...+++.+-.++..++...
T Consensus 176 m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k 255 (932)
T KOG2053|consen 176 MVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEK 255 (932)
T ss_pred HHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHh
Confidence 677776654 22122222333344557788999999884 33 2344455555667778888889999999998888887
Q ss_pred C
Q 002666 431 G 431 (895)
Q Consensus 431 ~ 431 (895)
|
T Consensus 256 ~ 256 (932)
T KOG2053|consen 256 G 256 (932)
T ss_pred C
Confidence 6
No 99
>PF13041 PPR_2: PPR repeat family
Probab=99.12 E-value=1.9e-10 Score=80.21 Aligned_cols=50 Identities=46% Similarity=0.780 Sum_probs=37.4
Q ss_pred CChHhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 002666 260 VDIVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGVAPDDVTYTSMIGVLCK 309 (895)
Q Consensus 260 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~ 309 (895)
||+.+||.++++|++.|++++|.++|++|.+.|+.||..||+.+++++++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 56777777777777777777777777777777777777777777777664
No 100
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.10 E-value=3.9e-07 Score=96.63 Aligned_cols=93 Identities=13% Similarity=0.103 Sum_probs=51.3
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhcCCC-CCH--HHHHHHHHHH
Q 002666 301 TSMIGVLCKSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLFERLKQKGCI-PSV--IAYNSLLTCL 377 (895)
Q Consensus 301 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~--~~~~~l~~~~ 377 (895)
..+...+...|++++|...+++..+..+. +...+..+..++...|++++|...+++....... |+. ..|..+...+
T Consensus 118 ~~~a~~~~~~G~~~~A~~~~~~al~~~p~-~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~ 196 (355)
T cd05804 118 GMLAFGLEEAGQYDRAEEAARRALELNPD-DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFY 196 (355)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHH
Confidence 34445556666666666666666665543 4555555666666666666666666665553211 111 2334455555
Q ss_pred HhcCCHHHHHHHHHHHh
Q 002666 378 GKKGRVTEAMKIFEAMK 394 (895)
Q Consensus 378 ~~~g~~~~A~~~~~~~~ 394 (895)
...|++++|..+|++..
T Consensus 197 ~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 197 LERGDYEAALAIYDTHI 213 (355)
T ss_pred HHCCCHHHHHHHHHHHh
Confidence 56666666666665553
No 101
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=99.06 E-value=4.6e-05 Score=82.62 Aligned_cols=537 Identities=14% Similarity=0.098 Sum_probs=260.7
Q ss_pred HHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHH--HHHhcCCHhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCCHH
Q 002666 272 FGKVGKVDMAWKFFHEMKAQGVAPDDVTYTSMIG--VLCKSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFD 349 (895)
Q Consensus 272 ~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 349 (895)
....+++..|.+....+.+. .|+.... ..+. .+.+.|+.++|..+++.....++. |..|...+-.+|...|+.+
T Consensus 19 ~ld~~qfkkal~~~~kllkk--~Pn~~~a-~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d 94 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKK--HPNALYA-KVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLD 94 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHH--CCCcHHH-HHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhh
Confidence 34567888888888887775 3454322 2222 356788888888888877766665 7788888888888888888
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC----------HHH
Q 002666 350 EAFSLFERLKQKGCIPSVIAYNSLLTCLGKKGRVTEAMKIFEAMKKDARPNNTTYNVLIDMLCKAGN----------FED 419 (895)
Q Consensus 350 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~ 419 (895)
+|..+|++..... |+......+..+|.+.+.+.+-.+.--++-+..|.++..+-.++....+... ..-
T Consensus 95 ~~~~~Ye~~~~~~--P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~L 172 (932)
T KOG2053|consen 95 EAVHLYERANQKY--PSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLAL 172 (932)
T ss_pred HHHHHHHHHHhhC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHH
Confidence 8888888888763 5666677777778887777665555545555666666666666655554321 122
Q ss_pred HHHHHHHHHHCC-CCCChhhHHHHHHHHHhcCChhHHHHHHHH-hhhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHH
Q 002666 420 ALKFRDAMKEAG-LFPNVMTVNIMVDRLCKAQKLDEAFSIFEG-MDHKTCTPDAVTFCSLIDGLGKNGRVDDAYKFYEKM 497 (895)
Q Consensus 420 A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 497 (895)
|.+.++.+.+.+ -.-+..-.......+...|++++|.+++.. ..+.-...+...-+.-+..+...+++.+-.++-.++
T Consensus 173 A~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~L 252 (932)
T KOG2053|consen 173 AEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRL 252 (932)
T ss_pred HHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 333444444332 111111112222334445666666666522 222212223333344455555566666666666666
Q ss_pred HhCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHH
Q 002666 498 LDTDQIPNAILYTSLIRNFFKHGRKEDGHKIYKEMVQRGCSPDLMLLNTYMDCVFKAGETEKGRALFEEIKAQGFVPDVQ 577 (895)
Q Consensus 498 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 577 (895)
+..+.. | |...+.. +.++++....+....- +...+..+...+...+....... ++.
T Consensus 253 l~k~~D-d---y~~~~~s-------------v~klLe~~~~~~a~~~------~s~~~~l~~~~ek~~~~i~~~~R-gp~ 308 (932)
T KOG2053|consen 253 LEKGND-D---YKIYTDS-------------VFKLLELLNKEPAEAA------HSLSKSLDECIEKAQKNIGSKSR-GPY 308 (932)
T ss_pred HHhCCc-c---hHHHHHH-------------HHHHHHhcccccchhh------hhhhhhHHHHHHHHHHhhccccc-CcH
Confidence 655432 1 2111111 1111111001111000 01111222222222222221101 111
Q ss_pred -HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHH-------hH
Q 002666 578 -SYSILIHGLVKAGFAHETDQLFYAMKKQGCVLDTRAYNTVVDGFCKSGKVNKAYQLLEEMKTKGHYPTVV-------TY 649 (895)
Q Consensus 578 -~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-------~~ 649 (895)
..--+..-+..-|+.+++...|-+-.. +...|..=+..|...=..+.-..++....... ++.. .+
T Consensus 309 LA~lel~kr~~~~gd~ee~~~~y~~kfg-----~kpcc~~Dl~~yl~~l~~~q~~~l~~~l~~~~--~~~s~~~k~l~~h 381 (932)
T KOG2053|consen 309 LARLELDKRYKLIGDSEEMLSYYFKKFG-----DKPCCAIDLNHYLGHLNIDQLKSLMSKLVLAD--DDSSGDEKVLQQH 381 (932)
T ss_pred HHHHHHHHHhcccCChHHHHHHHHHHhC-----CCcHhHhhHHHhhccCCHHHHHHHHHHhhccC--CcchhhHHHHHHH
Confidence 111111112234555554433322111 11111111111221112222222222222110 0100 00
Q ss_pred HHHHHHHHccC-----CHHHHHHHHHHHH---HcC------CCcC---------HHHHHHHHHHHHccCCHH---HHHHH
Q 002666 650 GSVIDGLAKID-----RLDEAYMLFEEAK---SKG------IELN---------TVIYSSLIDGFGKVGRID---EAYLI 703 (895)
Q Consensus 650 ~~l~~~~~~~~-----~~~~A~~~~~~~~---~~~------~~~~---------~~~~~~l~~~~~~~g~~~---~A~~~ 703 (895)
...+....-.| .-+.-..++++.. +.| .-|+ .-+.+.|++.+.+.++.. +|+-+
T Consensus 382 ~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~L 461 (932)
T KOG2053|consen 382 LCVLLLLRLLGLYEKLPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITL 461 (932)
T ss_pred HHHHHHHHHhhccccCChHHHHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 00011111111 1112222222211 112 1222 124467788888887755 45555
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCC
Q 002666 704 MEELMQKGLTPNAYTWNCLLDALVKAEEISEAFVCFQSMKDLKCTPNHVTYSIIINGLCRVRKFNKAFVFWQEMQKQGFK 783 (895)
Q Consensus 704 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 783 (895)
++..+... +.|..+-..|+..|.-.|-+..|.++|..+--..+..|...|- +...+...|++..+...++....- +.
T Consensus 462 LE~glt~s-~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~-~~~~~~t~g~~~~~s~~~~~~lkf-y~ 538 (932)
T KOG2053|consen 462 LENGLTKS-PHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHL-IFRRAETSGRSSFASNTFNEHLKF-YD 538 (932)
T ss_pred HHHHhhcC-CccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHH-HHHHHHhcccchhHHHHHHHHHHH-Hh
Confidence 66555532 2266666778888888899999999998887656666654443 334556678888888888877653 11
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHH---HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002666 784 PNTITYTTMISGLAKAGNITEANGLFE---RFKENGGVPDSACYNAMMEGLSNANRAMDAYTLFEETR 848 (895)
Q Consensus 784 p~~~~~~~l~~~~~~~g~~~~A~~~~~---~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 848 (895)
.+..----+|....+.|.+.+..++.. ++..+-..--..+-+.....++..++.++-...++.|.
T Consensus 539 ~~~kE~~eyI~~AYr~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~~~~~q~~~~~~~~~ 606 (932)
T KOG2053|consen 539 SSLKETPEYIALAYRRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNADRGTQLLKLLESMK 606 (932)
T ss_pred hhhhhhHHHHHHHHHcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHhccc
Confidence 121111223333446777777665432 22211000122334455566777888888888888775
No 102
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.05 E-value=1.1e-08 Score=104.37 Aligned_cols=223 Identities=15% Similarity=0.084 Sum_probs=114.5
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHH
Q 002666 656 LAKIDRLDEAYMLFEEAKSKGIELNTVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTP-NAYTWNCLLDALVKAEEISE 734 (895)
Q Consensus 656 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~ 734 (895)
+.+.|++.+|.-.|+.+++.+ |-+...|..|+......++-..|+..+.+.++ +.| |..+...|+-.|...|.-.+
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~--LdP~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLE--LDPTNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHh--cCCccHHHHHHHHHHHhhhhhHHH
Confidence 344555555555555555543 33444555555555555555555555555555 223 44455555555555555555
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHH---------HHHHhcCCHhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHH
Q 002666 735 AFVCFQSMKDLKCTPNHVTYSIII---------NGLCRVRKFNKAFVFWQEMQKQ-GFKPNTITYTTMISGLAKAGNITE 804 (895)
Q Consensus 735 A~~~~~~~~~~~~~p~~~~~~~l~---------~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~ 804 (895)
|+..+..-+... |.. .|.... ..+.....+....++|-++... +..+|+.++..|+-.|.-.|++++
T Consensus 372 Al~~L~~Wi~~~--p~y-~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 372 ALKMLDKWIRNK--PKY-VHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHHHhC--ccc-hhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 555555544311 110 000000 0001111222333444443332 334556666666666666666666
Q ss_pred HHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002666 805 ANGLFERFKENGGVP-DSACYNAMMEGLSNANRAMDAYTLFEETRRKGFNIHTKTCVILLDALHKAECLEQAAIVGAVLR 883 (895)
Q Consensus 805 A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~l~ 883 (895)
|+..|+.++. ..| |...|+.|+..+....+.++|+..|.++++.. |...++.+.|+-+|...|.+++|.+.+-..+
T Consensus 449 aiDcf~~AL~--v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLq-P~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 449 AVDCFEAALQ--VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQ-PGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHHHHh--cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcC-CCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 6666666666 555 56666666666666666666666666666652 5555666666666666666666665544444
Q ss_pred HHHH
Q 002666 884 ETAK 887 (895)
Q Consensus 884 ~~~~ 887 (895)
.+..
T Consensus 526 ~mq~ 529 (579)
T KOG1125|consen 526 SMQR 529 (579)
T ss_pred Hhhh
Confidence 4433
No 103
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=99.03 E-value=4.5e-05 Score=77.76 Aligned_cols=424 Identities=12% Similarity=0.104 Sum_probs=213.8
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 002666 365 PSVIAYNSLLTCLGKKGRVTEAMKIFEAMKKDARPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEAGLFPNVMTVNIMVD 444 (895)
Q Consensus 365 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 444 (895)
-|...|+.||+-+... .++++++.++++....|..+..|..-|.......+++...++|.+.+..- .+...|...+.
T Consensus 18 ~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW~lYl~ 94 (656)
T KOG1914|consen 18 YDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLWKLYLS 94 (656)
T ss_pred ccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHHHHHHH
Confidence 3677788777766655 78888888888888888888888888888888888888888888877653 34555555554
Q ss_pred HHHh-cCChhHHH----HHHHHhh-hCCCCC-ChhhHHHHHHH---------HhhcCCHHHHHHHHHHHHhCCCCcchh-
Q 002666 445 RLCK-AQKLDEAF----SIFEGMD-HKTCTP-DAVTFCSLIDG---------LGKNGRVDDAYKFYEKMLDTDQIPNAI- 507 (895)
Q Consensus 445 ~~~~-~g~~~~A~----~~~~~~~-~~~~~~-~~~~~~~l~~~---------~~~~g~~~~A~~~~~~~~~~~~~~~~~- 507 (895)
--.+ .|+...+. +.|+-.. +.|+.+ ....|...+.. +..+.+++...++|++++..... +..
T Consensus 95 YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~-nlEk 173 (656)
T KOG1914|consen 95 YVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMH-NLEK 173 (656)
T ss_pred HHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccc-cHHH
Confidence 3322 23333322 2222222 223222 22334444433 23344667777888888764221 111
Q ss_pred hH------HHHHHHH-------HhcCCHHHHHHHHHHHHHc--CCCCCHhhHHHHHHHHHHcCChh--HHHHHHHHHHHC
Q 002666 508 LY------TSLIRNF-------FKHGRKEDGHKIYKEMVQR--GCSPDLMLLNTYMDCVFKAGETE--KGRALFEEIKAQ 570 (895)
Q Consensus 508 ~~------~~l~~~~-------~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~ 570 (895)
.| ..-+... -+...+..|..+++++... |......+ .-..|-.+ ...+++...++.
T Consensus 174 LW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~-------vp~~~T~~e~~qv~~W~n~I~w 246 (656)
T KOG1914|consen 174 LWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPA-------VPPKGTKDEIQQVELWKNWIKW 246 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCC-------CCCCCChHHHHHHHHHHHHHHH
Confidence 11 1111110 0112234444444444321 11111000 00000001 111122211110
Q ss_pred ----CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHH-HHHcCCCCCHHhH-----HHHHHHHHccCC-------hHHHHH
Q 002666 571 ----GFV-PDVQSYSILIHGLVKAGFAHETDQLFYA-MKKQGCVLDTRAY-----NTVVDGFCKSGK-------VNKAYQ 632 (895)
Q Consensus 571 ----~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~~~-----~~l~~~~~~~g~-------~~~A~~ 632 (895)
+.. .+..... ....-.++. +.-.+..|+.... ....+.+...|+ .+++..
T Consensus 247 EksNpL~t~~~~~~~------------~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~ 314 (656)
T KOG1914|consen 247 EKSNPLRTLDGTMLT------------RRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAAS 314 (656)
T ss_pred HhcCCcccccccHHH------------HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHH
Confidence 000 0000000 000001111 1111122221100 001112222233 344555
Q ss_pred HHHHHHHCCCCCCHHhHHHHHHHHHcc---CCHHHHHHHHHHHHHcC-CCcCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 002666 633 LLEEMKTKGHYPTVVTYGSVIDGLAKI---DRLDEAYMLFEEAKSKG-IELNTVIYSSLIDGFGKVGRIDEAYLIMEELM 708 (895)
Q Consensus 633 ~~~~~~~~~~~p~~~~~~~l~~~~~~~---~~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 708 (895)
+++..+..-..-+..+|..+.+--... .+.+....++++.+..- ..|+ .+|-.+++.-.+..-+..|..+|.++.
T Consensus 315 ~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR 393 (656)
T KOG1914|consen 315 IYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAR 393 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHh
Confidence 555544332222333443333221111 12455556666665542 2333 345556666666666888888888888
Q ss_pred HCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC--
Q 002666 709 QKGLTP-NAYTWNCLLDALVKAEEISEAFVCFQSMKDLKCTPNHVTYSIIINGLCRVRKFNKAFVFWQEMQKQGFKPN-- 785 (895)
Q Consensus 709 ~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-- 785 (895)
+.+..+ ++++.++++..|| +++.+-|.++|+--+..- ..+...-...++-+.+.++-..|..+|++....++.|+
T Consensus 394 ~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf-~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks 471 (656)
T KOG1914|consen 394 EDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKF-GDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKS 471 (656)
T ss_pred hccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhc-CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhh
Confidence 866666 6777777777665 577788888888766522 23333344666777777888888888888887655555
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002666 786 TITYTTMISGLAKAGNITEANGLFERFKE 814 (895)
Q Consensus 786 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 814 (895)
..+|..++.-=..-|++..+.++-+++..
T Consensus 472 ~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 472 KEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 35788888777777888888887777654
No 104
>PF13041 PPR_2: PPR repeat family
Probab=99.00 E-value=1.1e-09 Score=76.34 Aligned_cols=49 Identities=39% Similarity=0.739 Sum_probs=26.2
Q ss_pred CCHHHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCCHHhHHHHHHHHH
Q 002666 295 PDDVTYTSMIGVLCKSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYG 343 (895)
Q Consensus 295 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 343 (895)
||..+|++++.+|++.|++++|.++|++|.+.|+.||..||+.++.+++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4555555555555555555555555555555555555555555555544
No 105
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.97 E-value=8.8e-08 Score=97.93 Aligned_cols=224 Identities=14% Similarity=0.093 Sum_probs=116.2
Q ss_pred HHHhcCCHhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 002666 306 VLCKSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLFERLKQKGCIPSVIAYNSLLTCLGKKGRVTE 385 (895)
Q Consensus 306 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 385 (895)
-+.+.|++.+|.-.|+..+..+|. +..+|..|+......++-..|+..+.+..+..+. +..+...|.-.|...|.-.+
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHH
Confidence 345566666666666666655554 5566666666666666666666666666655422 44555555555666665556
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHH-------HHHHhcCCHHHHHHHHHHH-HHCCCCCChhhHHHHHHHHHhcCChhHHHH
Q 002666 386 AMKIFEAMKKDARPNNTTYNVLI-------DMLCKAGNFEDALKFRDAM-KEAGLFPNVMTVNIMVDRLCKAQKLDEAFS 457 (895)
Q Consensus 386 A~~~~~~~~~~~~~~~~~~~~l~-------~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 457 (895)
|+..++......|+-...-..-. ..+.....+....++|-++ ...+..+|+.....|.-.|.-.|++++|.+
T Consensus 372 Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 66655544332221110000000 0001111122223333333 233333455555556556666666666666
Q ss_pred HHHHhhhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002666 458 IFEGMDHKTCTPDAVTFCSLIDGLGKNGRVDDAYKFYEKMLDTDQIPNAILYTSLIRNFFKHGRKEDGHKIYKEMV 533 (895)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 533 (895)
.|+.++... +.|...|+.|+..+....+.++|+..|.++++..| .-+.+.+.|+.+|...|.+++|.+.|-..+
T Consensus 452 cf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP-~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 452 CFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQLQP-GYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCC-CeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 666666553 22455666666666666666666666666666543 234455556666666666666666555544
No 106
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.95 E-value=2.7e-06 Score=102.67 Aligned_cols=376 Identities=11% Similarity=-0.029 Sum_probs=217.2
Q ss_pred HHHHHHHHHHccCCcchHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q 002666 124 AYNSLLMVMAVSKNFEPLEEILGEMSLAGIGPT-NNTCIELVVSCVKSKMLREAFDIIQTMRKFKFRPAFTAYTTLIGAL 202 (895)
Q Consensus 124 ~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 202 (895)
.+...+..+...|++.++....... +..+. ..........+...|.+..+..+++.+.......+..........+
T Consensus 343 lh~raa~~~~~~g~~~~Al~~a~~a---~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~ 419 (903)
T PRK04841 343 LHRAAAEAWLAQGFPSEAIHHALAA---GDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLA 419 (903)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHC---CCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHH
Confidence 3444445555566665555443322 10000 0112223334455677777666666542111111222223344455
Q ss_pred HhcCChhHHHHHHHHHHHcCC------Cc--CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCh----HhHHHHHH
Q 002666 203 ATVRESNLMLNLFHQMQELGY------EV--SVHLFTTLIRVFAREGRVDDALFLLDEMKNNAFSVDI----VLYNVCID 270 (895)
Q Consensus 203 ~~~~~~~~a~~~~~~~~~~~~------~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~ 270 (895)
...|+++++...+.++...-- .+ .......+...+...|++++|...+++........+. ...+.+..
T Consensus 420 ~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~ 499 (903)
T PRK04841 420 QSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGE 499 (903)
T ss_pred HHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHH
Confidence 667788888887777654210 11 1122233445566788888888888887653212221 23455666
Q ss_pred HHHhcCChhhHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHhcCCHhHHHHHHHHHhhC----CCC--C-CHHhHHHH
Q 002666 271 CFGKVGKVDMAWKFFHEMKAQ----GVA-PDDVTYTSMIGVLCKSKRLEEAVAMFEQMDRN----REV--P-CAYAYNTM 338 (895)
Q Consensus 271 ~~~~~g~~~~A~~~~~~~~~~----g~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~--~-~~~~~~~l 338 (895)
.+...|++++|...+++.... |.. +...++..+...+...|++++|...+++.... +.. + ....+..+
T Consensus 500 ~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 579 (903)
T PRK04841 500 VHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIR 579 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHH
Confidence 777888888888888777643 111 11234556667778888888888888776542 111 1 23345566
Q ss_pred HHHHHccCCHHHHHHHHHHHHhc----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcC---CCCCHH--HH--HHH
Q 002666 339 IMGYGSVGKFDEAFSLFERLKQK----GCIPSVIAYNSLLTCLGKKGRVTEAMKIFEAMKKD---ARPNNT--TY--NVL 407 (895)
Q Consensus 339 ~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~--~~--~~l 407 (895)
...+...|++++|...+.+.... +.......+..+...+...|++++|...++..... ...... .. ...
T Consensus 580 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~ 659 (903)
T PRK04841 580 AQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVR 659 (903)
T ss_pred HHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHH
Confidence 66777788888888888876543 11112334555677778888888888888776431 111111 11 112
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCh---hhHHHHHHHHHhcCChhHHHHHHHHhhhC----CCCC-ChhhHHHHHH
Q 002666 408 IDMLCKAGNFEDALKFRDAMKEAGLFPNV---MTVNIMVDRLCKAQKLDEAFSIFEGMDHK----TCTP-DAVTFCSLID 479 (895)
Q Consensus 408 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~ 479 (895)
+..+...|+.+.|..++............ ..+..+...+...|+.++|...+++.... +... ...+...++.
T Consensus 660 ~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~ 739 (903)
T PRK04841 660 LIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQ 739 (903)
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 24445578888888887765542111111 11345667778889999998888877543 2222 2346677888
Q ss_pred HHhhcCCHHHHHHHHHHHHhCCC
Q 002666 480 GLGKNGRVDDAYKFYEKMLDTDQ 502 (895)
Q Consensus 480 ~~~~~g~~~~A~~~~~~~~~~~~ 502 (895)
++...|+.++|...+.++++...
T Consensus 740 a~~~~G~~~~A~~~L~~Al~la~ 762 (903)
T PRK04841 740 LYWQQGRKSEAQRVLLEALKLAN 762 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHhC
Confidence 88999999999999999987653
No 107
>PLN02789 farnesyltranstransferase
Probab=98.95 E-value=7.2e-07 Score=89.96 Aligned_cols=205 Identities=11% Similarity=0.071 Sum_probs=125.4
Q ss_pred hcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCh--hh
Q 002666 204 TVRESNLMLNLFHQMQELGYEVSVHLFTTLIRVFAREG-RVDDALFLLDEMKNNAFSVDIVLYNVCIDCFGKVGKV--DM 280 (895)
Q Consensus 204 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--~~ 280 (895)
..+..++|+.+..++++.+ +-+..+|+....++...| ++++++.+++++.+.+ +.+..+|+-...++.+.|+. ++
T Consensus 49 ~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~~~~ 126 (320)
T PLN02789 49 SDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDAANK 126 (320)
T ss_pred cCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchhhHH
Confidence 3456677777777777753 335556666666666666 4677777777777664 33444565544445555542 56
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHcc---CC----HHHHHH
Q 002666 281 AWKFFHEMKAQGVAPDDVTYTSMIGVLCKSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSV---GK----FDEAFS 353 (895)
Q Consensus 281 A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~----~~~A~~ 353 (895)
+..+++.+++...+ |..+|+....++...|++++|++.++++++.++. +..+|+.....+.+. |. .+++..
T Consensus 127 el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el~ 204 (320)
T PLN02789 127 ELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSELK 204 (320)
T ss_pred HHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHHHH
Confidence 67777777766433 5667777777777777777777777777777665 666676666555443 21 234555
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 002666 354 LFERLKQKGCIPSVIAYNSLLTCLGKK----GRVTEAMKIFEAMKKDARPNNTTYNVLIDMLCK 413 (895)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 413 (895)
+..+++...+ -|..+|+.+...+... +...+|.+.+.+.....+.+..+...|+..|+.
T Consensus 205 y~~~aI~~~P-~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 205 YTIDAILANP-RNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHhCC-CCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHh
Confidence 5555555542 2555666665555552 333456666666555555566666666666654
No 108
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.95 E-value=7.1e-05 Score=76.37 Aligned_cols=186 Identities=16% Similarity=0.189 Sum_probs=111.2
Q ss_pred hHHHHHHHHhhhCCCCCChhhHHHHHHHHhhc---CCHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHhcCCHHHHHHHH
Q 002666 453 DEAFSIFEGMDHKTCTPDAVTFCSLIDGLGKN---GRVDDAYKFYEKMLDTDQIPNAILYTSLIRNFFKHGRKEDGHKIY 529 (895)
Q Consensus 453 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 529 (895)
+++..+++.....-...+..+|..+...-... ...+....++++++......-..+|...+....+..-...|..+|
T Consensus 310 ~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF 389 (656)
T KOG1914|consen 310 DEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIF 389 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHH
Confidence 44555555544432222444444443322211 125555566666655433333345666666666666677777777
Q ss_pred HHHHHcCCCC-CHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 002666 530 KEMVQRGCSP-DLMLLNTYMDCVFKAGETEKGRALFEEIKAQGFVPDVQSYSILIHGLVKAGFAHETDQLFYAMKKQGCV 608 (895)
Q Consensus 530 ~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 608 (895)
.++.+.+..+ ...+..+++..+| .++.+-|..+|+--.+. +..++.-....+..+...++-..|..+|++.+..+++
T Consensus 390 ~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~ 467 (656)
T KOG1914|consen 390 KKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLS 467 (656)
T ss_pred HHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCC
Confidence 7777766555 5555566665444 46667777777765544 1223444455666677777777788888877777555
Q ss_pred CC--HHhHHHHHHHHHccCChHHHHHHHHHHHHC
Q 002666 609 LD--TRAYNTVVDGFCKSGKVNKAYQLLEEMKTK 640 (895)
Q Consensus 609 ~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 640 (895)
++ ..+|..++..-..-|+...++++-+++...
T Consensus 468 ~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~a 501 (656)
T KOG1914|consen 468 ADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTA 501 (656)
T ss_pred hhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 44 467888888778888888888887776543
No 109
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.95 E-value=3.5e-06 Score=101.73 Aligned_cols=373 Identities=9% Similarity=-0.005 Sum_probs=218.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcC
Q 002666 197 TLIGALATVRESNLMLNLFHQMQELGYEVSVHLFTTLIRVFAREGRVDDALFLLDEMKNNAFSVDIVLYNVCIDCFGKVG 276 (895)
Q Consensus 197 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 276 (895)
.....+...|++.+|......+... ..-..........+...|+++.+..+++.+.......+..........+...|
T Consensus 346 raa~~~~~~g~~~~Al~~a~~a~d~--~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g 423 (903)
T PRK04841 346 AAAEAWLAQGFPSEAIHHALAAGDA--QLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQH 423 (903)
T ss_pred HHHHHHHHCCCHHHHHHHHHHCCCH--HHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCC
Confidence 3344566667777666544433211 11112233344455667888877777766532111122223334455556778
Q ss_pred ChhhHHHHHHHHHHCCC------CCC--HHHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCCH----HhHHHHHHHHHc
Q 002666 277 KVDMAWKFFHEMKAQGV------APD--DVTYTSMIGVLCKSKRLEEAVAMFEQMDRNREVPCA----YAYNTMIMGYGS 344 (895)
Q Consensus 277 ~~~~A~~~~~~~~~~g~------~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~ 344 (895)
++++|...+....+.-- .+. ......+...+...|++++|...+++........+. .+.+.++..+..
T Consensus 424 ~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~ 503 (903)
T PRK04841 424 RYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHC 503 (903)
T ss_pred CHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHH
Confidence 88888888877654310 111 112233445566788888888888887653222221 345666777788
Q ss_pred cCCHHHHHHHHHHHHhc----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc----CCC----CCHHHHHHHHHHH
Q 002666 345 VGKFDEAFSLFERLKQK----GC-IPSVIAYNSLLTCLGKKGRVTEAMKIFEAMKK----DAR----PNNTTYNVLIDML 411 (895)
Q Consensus 345 ~g~~~~A~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~----~~~~~~~~l~~~~ 411 (895)
.|++++|...+.+.... |. .....++..+...+...|++++|...+++... ... .....+..++..+
T Consensus 504 ~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 583 (903)
T PRK04841 504 KGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLL 583 (903)
T ss_pred cCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHH
Confidence 88888888888877642 11 11133556667778888888888888876543 111 1233455667777
Q ss_pred HhcCCHHHHHHHHHHHHHCC--CCC--ChhhHHHHHHHHHhcCChhHHHHHHHHhhhCC--CCCChh--hH--HHHHHHH
Q 002666 412 CKAGNFEDALKFRDAMKEAG--LFP--NVMTVNIMVDRLCKAQKLDEAFSIFEGMDHKT--CTPDAV--TF--CSLIDGL 481 (895)
Q Consensus 412 ~~~g~~~~A~~~~~~~~~~~--~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~--~~--~~l~~~~ 481 (895)
...|++++|...+++..... ..+ ....+..+...+...|++++|...++.+.... ...... .. ...+..+
T Consensus 584 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 663 (903)
T PRK04841 584 WEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYW 663 (903)
T ss_pred HHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHH
Confidence 77888888888887765421 111 12334445667778888888888877764321 010110 11 1122444
Q ss_pred hhcCCHHHHHHHHHHHHhCCCCcc---hhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-HhhHHHHHHHHHH
Q 002666 482 GKNGRVDDAYKFYEKMLDTDQIPN---AILYTSLIRNFFKHGRKEDGHKIYKEMVQR----GCSPD-LMLLNTYMDCVFK 553 (895)
Q Consensus 482 ~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~ 553 (895)
...|+.+.|..++........... ......+...+...|++++|...+++.... |...+ ..+...+..++..
T Consensus 664 ~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~ 743 (903)
T PRK04841 664 QMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQ 743 (903)
T ss_pred HHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHH
Confidence 557888888888776554221111 111346677788888888888888877653 22222 2345556677888
Q ss_pred cCChhHHHHHHHHHHHCC
Q 002666 554 AGETEKGRALFEEIKAQG 571 (895)
Q Consensus 554 ~~~~~~a~~~~~~~~~~~ 571 (895)
.|+.++|...+.+..+..
T Consensus 744 ~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 744 QGRKSEAQRVLLEALKLA 761 (903)
T ss_pred cCCHHHHHHHHHHHHHHh
Confidence 899999999998887764
No 110
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.94 E-value=3.9e-08 Score=97.72 Aligned_cols=63 Identities=22% Similarity=0.235 Sum_probs=24.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHH
Q 002666 366 SVIAYNSLLTCLGKKGRVTEAMKIFEAMKKDARPNNTTYNVLIDMLCKAGNF-EDALKFRDAMK 428 (895)
Q Consensus 366 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~ 428 (895)
++.+.+.++.+....|++++|.+++.+.....|.++.+...++.+....|+. +.+.+++.++.
T Consensus 200 t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~ 263 (290)
T PF04733_consen 200 TPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLK 263 (290)
T ss_dssp SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 3333444444444444444444444444333333444444444444444443 33333444433
No 111
>PLN02789 farnesyltranstransferase
Probab=98.94 E-value=1.1e-06 Score=88.55 Aligned_cols=205 Identities=11% Similarity=0.086 Sum_probs=133.9
Q ss_pred hcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCh--hH
Q 002666 169 KSKMLREAFDIIQTMRKFKFRPAFTAYTTLIGALATVR-ESNLMLNLFHQMQELGYEVSVHLFTTLIRVFAREGRV--DD 245 (895)
Q Consensus 169 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--~~ 245 (895)
..++.++|+....++++.. +-+..+|+....++...| .+++++..++++.+.+ +-+..+|+....++.+.|+. ++
T Consensus 49 ~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~~~~ 126 (320)
T PLN02789 49 SDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDAANK 126 (320)
T ss_pred cCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchhhHH
Confidence 3455666666666666553 334456666666666666 4677777777777654 33555666655555566653 56
Q ss_pred HHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CCH----hHHHH
Q 002666 246 ALFLLDEMKNNAFSVDIVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGVAPDDVTYTSMIGVLCKS---KRL----EEAVA 318 (895)
Q Consensus 246 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~---g~~----~~A~~ 318 (895)
++.+++++.+.+ +.+..+|+-...++...|+++++++.++++++.++. |..+|+....++.+. |.+ +++++
T Consensus 127 el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el~ 204 (320)
T PLN02789 127 ELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSELK 204 (320)
T ss_pred HHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHHHH
Confidence 777777777665 456667777777777778888888888888776544 556666666555444 222 46777
Q ss_pred HHHHHhhCCCCCCHHhHHHHHHHHHcc----CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 002666 319 MFEQMDRNREVPCAYAYNTMIMGYGSV----GKFDEAFSLFERLKQKGCIPSVIAYNSLLTCLGK 379 (895)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 379 (895)
+..+++...|. |..+|+.+...+... +...+|.+.+.+..+.++ .+..+...|+..|+.
T Consensus 205 y~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~-~s~~al~~l~d~~~~ 267 (320)
T PLN02789 205 YTIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDS-NHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccC-CcHHHHHHHHHHHHh
Confidence 77777777765 777888777777663 345667777777776542 366677778877775
No 112
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.89 E-value=1.2e-07 Score=94.39 Aligned_cols=250 Identities=13% Similarity=0.102 Sum_probs=126.1
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhh
Q 002666 201 ALATVRESNLMLNLFHQMQELGYEVSVHLFTTLIRVFAREGRVDDALFLLDEMKNNAFSVDIVLYNVCIDCFGKVGKVDM 280 (895)
Q Consensus 201 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 280 (895)
-..-.|+|..++.-.+ ......+........+.+++...|+++.++ .++.+.. .|.......+...+...++-+.
T Consensus 10 n~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~ 84 (290)
T PF04733_consen 10 NQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKES 84 (290)
T ss_dssp HHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHC
T ss_pred HHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHH
Confidence 3445677777775555 333322333445556667777777766543 3333332 4444444444433333334444
Q ss_pred HHHHHHHHHHCCCCCCHHHHH-HHHHHHHhcCCHhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHH
Q 002666 281 AWKFFHEMKAQGVAPDDVTYT-SMIGVLCKSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLFERLK 359 (895)
Q Consensus 281 A~~~~~~~~~~g~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 359 (895)
+..-+++.......++..++. .....+...|++++|++++... .+.......+..|++.++++.|.+.++.|.
T Consensus 85 ~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~ 158 (290)
T PF04733_consen 85 ALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQ 158 (290)
T ss_dssp HHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 544444443332222222222 2233455667777777766543 245566666677777777777777777776
Q ss_pred hcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 002666 360 QKGCIPSVIAYNSLLTCLGK----KGRVTEAMKIFEAMKKDARPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEAGLFPN 435 (895)
Q Consensus 360 ~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 435 (895)
+.+ .| .+...++.++.. .+.+.+|..+|+++....++++.+.+.++.++...|++++|.+++.+..+.+. .+
T Consensus 159 ~~~--eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~-~~ 234 (290)
T PF04733_consen 159 QID--ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDP-ND 234 (290)
T ss_dssp CCS--CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-C-CH
T ss_pred hcC--Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc-CC
Confidence 653 22 233334333332 22466666666666666666666666666666666666666666666654432 23
Q ss_pred hhhHHHHHHHHHhcCCh-hHHHHHHHHhhhC
Q 002666 436 VMTVNIMVDRLCKAQKL-DEAFSIFEGMDHK 465 (895)
Q Consensus 436 ~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~ 465 (895)
..+...++.+....|+. +.+.+.+.++...
T Consensus 235 ~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 235 PDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 34444444444455554 4444555555443
No 113
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.87 E-value=5.6e-07 Score=94.64 Aligned_cols=213 Identities=15% Similarity=0.062 Sum_probs=105.7
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccC
Q 002666 267 VCIDCFGKVGKVDMAWKFFHEMKAQGVAPDDVTYTSMIGVLCKSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVG 346 (895)
Q Consensus 267 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 346 (895)
.+...+...|-...|..+|++... |.-+|.+|+..|+..+|..+..+-.+. +|+...|-.++.......
T Consensus 403 ~laell~slGitksAl~I~Erlem---------w~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~s 471 (777)
T KOG1128|consen 403 LLAELLLSLGITKSALVIFERLEM---------WDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDPS 471 (777)
T ss_pred HHHHHHHHcchHHHHHHHHHhHHH---------HHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccChH
Confidence 344455555555555555544322 333444555555555555555554441 234445555555444444
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 002666 347 KFDEAFSLFERLKQKGCIPSVIAYNSLLTCLGKKGRVTEAMKIFEAMKKDARPNNTTYNVLIDMLCKAGNFEDALKFRDA 426 (895)
Q Consensus 347 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 426 (895)
-+++|.++.+..... +-..+.....+.++++++.+.|+.-.+..|-...+|..+..+..+.++++.|.+.|..
T Consensus 472 ~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~r 544 (777)
T KOG1128|consen 472 LYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHR 544 (777)
T ss_pred HHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHH
Confidence 455555544433221 2222222233345555555555555555555555555555555555555555555555
Q ss_pred HHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHh
Q 002666 427 MKEAGLFPNVMTVNIMVDRLCKAQKLDEAFSIFEGMDHKTCTPDAVTFCSLIDGLGKNGRVDDAYKFYEKMLD 499 (895)
Q Consensus 427 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 499 (895)
..... +.+...||.+-.+|.+.++-.+|...+.+..+.+ ..+...|...+....+.|.+++|.+.+.++.+
T Consensus 545 cvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 545 CVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 55432 1123445555555555555555555555555544 22334444555555566666666666665543
No 114
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.84 E-value=7.4e-07 Score=93.75 Aligned_cols=226 Identities=13% Similarity=0.069 Sum_probs=176.6
Q ss_pred CCCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 002666 643 YPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNTVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNAYTWNCL 722 (895)
Q Consensus 643 ~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 722 (895)
+|-...-..+...+.+.|-...|..+|++. ..|...|.+|+..|+..+|..+..+.++ -+|++..|..|
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erl---------emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~L 463 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERL---------EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLL 463 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhH---------HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHh
Confidence 344445566777888889999999888765 3456677888889999999888888777 35788888888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 002666 723 LDALVKAEEISEAFVCFQSMKDLKCTPNHVTYSIIINGLCRVRKFNKAFVFWQEMQKQGFKPNTITYTTMISGLAKAGNI 802 (895)
Q Consensus 723 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 802 (895)
++......-+++|.++.+..... +-..+.....+.++++++.+.++.-.+.+ +--..+|..++.+..+.+++
T Consensus 464 GDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~ 535 (777)
T KOG1128|consen 464 GDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKE 535 (777)
T ss_pred hhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhh
Confidence 88877777788888888766542 11122222334789999999998877642 23467888888888899999
Q ss_pred HHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 002666 803 TEANGLFERFKENGGVP-DSACYNAMMEGLSNANRAMDAYTLFEETRRKGFNIHTKTCVILLDALHKAECLEQAAIVGAV 881 (895)
Q Consensus 803 ~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 881 (895)
+.|.+.|...+. ..| +...|+++..+|.+.|+..+|...+.++++.+ ..+...|-+-.-+..+.|.|++|.+...+
T Consensus 536 q~av~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~r 612 (777)
T KOG1128|consen 536 QAAVKAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHR 612 (777)
T ss_pred HHHHHHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHH
Confidence 999999999988 777 57889999999999999999999999999887 66677777777788899999999999999
Q ss_pred HHHHHHhhh
Q 002666 882 LRETAKSQH 890 (895)
Q Consensus 882 l~~~~~~~~ 890 (895)
+.+..+.+.
T Consensus 613 ll~~~~~~~ 621 (777)
T KOG1128|consen 613 LLDLRKKYK 621 (777)
T ss_pred HHHhhhhcc
Confidence 888877654
No 115
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.82 E-value=0.00016 Score=81.66 Aligned_cols=240 Identities=8% Similarity=0.048 Sum_probs=169.8
Q ss_pred CCCHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHH
Q 002666 119 AHSLEAYNSLLMVMAVSKNFEPLEEILGEMSLAGIGPTNNTCIELVVSCVKSKMLREAFDIIQTMRKFKFRPAFTAYTTL 198 (895)
Q Consensus 119 ~~~~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 198 (895)
|....++..++..+...+++++|.++.++.... .|.....|..++..+.+.+++.++..+ .+
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~-~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~ 89 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKE-HKKSISALYISGILSLSRRPLNDSNLL-----------------NL 89 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCcceehHHHHHHHHHhhcchhhhhhh-----------------hh
Confidence 456677888888888888888888888765554 334445555555566666665555433 22
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCh
Q 002666 199 IGALATVRESNLMLNLFHQMQELGYEVSVHLFTTLIRVFAREGRVDDALFLLDEMKNNAFSVDIVLYNVCIDCFGKVGKV 278 (895)
Q Consensus 199 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 278 (895)
+..+....++.....++..+.+. .-+..++..++.+|-+.|+.++|..+++++++.+ +.|+.+.|.++..|... ++
T Consensus 90 l~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL 165 (906)
T PRK14720 90 IDSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DK 165 (906)
T ss_pred hhhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hH
Confidence 33333444554444455555553 3355688888899999999999999999999887 66788888888888888 89
Q ss_pred hhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHH
Q 002666 279 DMAWKFFHEMKAQGVAPDDVTYTSMIGVLCKSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLFERL 358 (895)
Q Consensus 279 ~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 358 (895)
++|.+++.+.+.. +...+++..+.+++.++....+. +...+..+. +.+
T Consensus 166 ~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~-d~d~f~~i~----------------~ki 213 (906)
T PRK14720 166 EKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSD-DFDFFLRIE----------------RKV 213 (906)
T ss_pred HHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcc-cchHHHHHH----------------HHH
Confidence 9998888877653 66777888899989888887654 433333333 222
Q ss_pred Hhc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 002666 359 KQK-GCIPSVIAYNSLLTCLGKKGRVTEAMKIFEAMKKDARPNNTTYNVLIDMLC 412 (895)
Q Consensus 359 ~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 412 (895)
... |..--+.++..+-..|-..+++++++.+++.+.+..+.|..+...++.+|.
T Consensus 214 ~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 214 LGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 222 222345567777788888899999999999999988999999999998887
No 116
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.77 E-value=9.6e-07 Score=87.07 Aligned_cols=185 Identities=15% Similarity=0.006 Sum_probs=124.1
Q ss_pred cCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH--HH
Q 002666 679 LNTVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNA---YTWNCLLDALVKAEEISEAFVCFQSMKDLKCTPNH--VT 753 (895)
Q Consensus 679 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~ 753 (895)
.....+..++..+...|++++|...++++++... .+. .++..++.++...|++++|+..++++++....... .+
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYP-FSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 3556777778888888999999999998887421 122 46677888888899999999999998874321111 24
Q ss_pred HHHHHHHHHhc--------CCHhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 002666 754 YSIIINGLCRV--------RKFNKAFVFWQEMQKQGFKPNT-ITYTTMISGLAKAGNITEANGLFERFKENGGVPDSACY 824 (895)
Q Consensus 754 ~~~l~~~~~~~--------g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 824 (895)
+..+..++... |++++|.+.++++.+. .|+. ..+..+..... .... . ....
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~~~~-------~-------~~~~ 169 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----LRNR-------L-------AGKE 169 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----HHHH-------H-------HHHH
Confidence 55566666554 6788888888888764 3443 23322221110 0000 0 0112
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002666 825 NAMMEGLSNANRAMDAYTLFEETRRKG--FNIHTKTCVILLDALHKAECLEQAAIVGAVLRE 884 (895)
Q Consensus 825 ~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~l~~ 884 (895)
..++..+.+.|++++|+..++++++.. .+.....+..++.++...|++++|....+.+..
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 356777888999999999999988762 133467888999999999999999986666654
No 117
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.75 E-value=8.4e-06 Score=74.75 Aligned_cols=174 Identities=14% Similarity=0.090 Sum_probs=120.9
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 002666 683 IYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNAYTWNCLLDALVKAEEISEAFVCFQSMKDLKCTPNHVTYSIIINGLC 762 (895)
Q Consensus 683 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 762 (895)
.|..+.-+....|+.+.|..+++.+... ++-+......-+..+-..|++++|+++|+.+++.+ +.|..++-.-+-..-
T Consensus 54 l~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilk 131 (289)
T KOG3060|consen 54 LYEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILK 131 (289)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHH
Confidence 3444444555667788888888887764 32233333333334556788888888888888755 455566665555666
Q ss_pred hcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcC---CHH
Q 002666 763 RVRKFNKAFVFWQEMQKQGFKPNTITYTTMISGLAKAGNITEANGLFERFKENGGVP-DSACYNAMMEGLSNAN---RAM 838 (895)
Q Consensus 763 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g---~~~ 838 (895)
..|+.-+|++-+.+..+. +..|...|..|...|...|++++|.-.+++++- +.| ++..+..++..++-.| +.+
T Consensus 132 a~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll--~~P~n~l~f~rlae~~Yt~gg~eN~~ 208 (289)
T KOG3060|consen 132 AQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL--IQPFNPLYFQRLAEVLYTQGGAENLE 208 (289)
T ss_pred HcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHH
Confidence 677777888888877775 777888888888888888888888888888876 667 6777778888776655 566
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHH
Q 002666 839 DAYTLFEETRRKGFNIHTKTCVIL 862 (895)
Q Consensus 839 ~A~~~~~~~~~~~~~~~~~~~~~l 862 (895)
-|+++|++.++.. +.+...++.+
T Consensus 209 ~arkyy~~alkl~-~~~~ral~GI 231 (289)
T KOG3060|consen 209 LARKYYERALKLN-PKNLRALFGI 231 (289)
T ss_pred HHHHHHHHHHHhC-hHhHHHHHHH
Confidence 7888888888774 4455555543
No 118
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.72 E-value=3.1e-06 Score=78.49 Aligned_cols=156 Identities=10% Similarity=0.090 Sum_probs=81.9
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 002666 685 SSLIDGFGKVGRIDEAYLIMEELMQKGLTPNAYTWNCLLDALVKAEEISEAFVCFQSMKDLKCTPNHVTYSIIINGLCRV 764 (895)
Q Consensus 685 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 764 (895)
..+...+...|+-+.+..+....... .+.|......++......|++..|+..+++..... ++|...|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 33444555555555555555544331 12244444455555555666666666666555522 44555555555556666
Q ss_pred CCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 002666 765 RKFNKAFVFWQEMQKQGFKPNTITYTTMISGLAKAGNITEANGLFERFKENGGVP-DSACYNAMMEGLSNANRAMDAYTL 843 (895)
Q Consensus 765 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~ 843 (895)
|++++|..-|.+..+. ...++...+.+...+.-.|+++.|..++...... .+ |..+-..|+.+....|++++|.++
T Consensus 148 Gr~~~Ar~ay~qAl~L-~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~--~~ad~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 148 GRFDEARRAYRQALEL-APNEPSIANNLGMSLLLRGDLEDAETLLLPAYLS--PAADSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred cChhHHHHHHHHHHHh-ccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC--CCCchHHHHHHHHHHhhcCChHHHHhh
Confidence 6666666555555553 1223445555555555556666666655555542 22 455555555555555666655554
Q ss_pred HH
Q 002666 844 FE 845 (895)
Q Consensus 844 ~~ 845 (895)
..
T Consensus 225 ~~ 226 (257)
T COG5010 225 AV 226 (257)
T ss_pred cc
Confidence 43
No 119
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.71 E-value=2.3e-06 Score=80.35 Aligned_cols=149 Identities=11% Similarity=0.107 Sum_probs=109.7
Q ss_pred HHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCCH
Q 002666 269 IDCFGKVGKVDMAWKFFHEMKAQGVAPDDVTYTSMIGVLCKSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKF 348 (895)
Q Consensus 269 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 348 (895)
+..|...|+++.+....+.+.. |. . .+...++.++++..+++.+..++. +...|..++..|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~-~-------~~~~~~~~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL-H-------QFASQQTPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc-c-------cccCchhHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCH
Confidence 4456677777765444322211 11 0 122366777888888888887776 788888888888888888
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHH-HhcCC--HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 002666 349 DEAFSLFERLKQKGCIPSVIAYNSLLTCL-GKKGR--VTEAMKIFEAMKKDARPNNTTYNVLIDMLCKAGNFEDALKFRD 425 (895)
Q Consensus 349 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 425 (895)
++|...|++..+..+. +...+..+..++ ...|+ .++|.+++++..+..|.+..++..++..+.+.|++++|...++
T Consensus 90 ~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 90 DNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 8888888888887633 677777777764 56666 4888888888888888888888888888888888888888888
Q ss_pred HHHHCC
Q 002666 426 AMKEAG 431 (895)
Q Consensus 426 ~~~~~~ 431 (895)
++.+..
T Consensus 169 ~aL~l~ 174 (198)
T PRK10370 169 KVLDLN 174 (198)
T ss_pred HHHhhC
Confidence 888764
No 120
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.71 E-value=1.9e-06 Score=84.96 Aligned_cols=185 Identities=12% Similarity=-0.006 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-C-ChHhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCH--HHHHH
Q 002666 227 VHLFTTLIRVFAREGRVDDALFLLDEMKNNAFS-V-DIVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGVAPDD--VTYTS 302 (895)
Q Consensus 227 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~--~~~~~ 302 (895)
...+..++..+...|++++|...|+++....+. + ....+..++.++.+.|++++|...++++.+....... .++..
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 112 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYL 112 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHH
Confidence 334444444455555555555555554443211 0 0123344445555555555555555555543211011 12333
Q ss_pred HHHHHHhc--------CCHhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 002666 303 MIGVLCKS--------KRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLFERLKQKGCIPSVIAYNSLL 374 (895)
Q Consensus 303 l~~~~~~~--------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 374 (895)
+..++... |++++|.+.|+++....+. +...+..+..... ... .. ......+.
T Consensus 113 ~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~----~~~-------~~-------~~~~~~~a 173 (235)
T TIGR03302 113 RGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDY----LRN-------RL-------AGKELYVA 173 (235)
T ss_pred HHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHH----HHH-------HH-------HHHHHHHH
Confidence 33333332 5666667777666665443 2222222111100 000 00 00112455
Q ss_pred HHHHhcCCHHHHHHHHHHHhcCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 002666 375 TCLGKKGRVTEAMKIFEAMKKDAR---PNNTTYNVLIDMLCKAGNFEDALKFRDAMKEA 430 (895)
Q Consensus 375 ~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 430 (895)
..+.+.|++++|+..++......| ....++..++.++...|++++|...++.+...
T Consensus 174 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 174 RFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 566777777777777777765433 34467777777777777777777777776653
No 121
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.70 E-value=3.5e-06 Score=78.12 Aligned_cols=157 Identities=15% Similarity=0.113 Sum_probs=91.1
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccC
Q 002666 267 VCIDCFGKVGKVDMAWKFFHEMKAQGVAPDDVTYTSMIGVLCKSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVG 346 (895)
Q Consensus 267 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 346 (895)
.+...+...|+-+.+..+........ .-|......++....+.|++..|+..|.+.....+. |..+|+.++.+|.+.|
T Consensus 71 ~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~-d~~~~~~lgaaldq~G 148 (257)
T COG5010 71 KLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPT-DWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCC-ChhhhhHHHHHHHHcc
Confidence 34445555555555555555543321 223334444666666666666666666666665543 6666666666666666
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 002666 347 KFDEAFSLFERLKQKGCIPSVIAYNSLLTCLGKKGRVTEAMKIFEAMKKDARPNNTTYNVLIDMLCKAGNFEDALKFRDA 426 (895)
Q Consensus 347 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 426 (895)
++++|..-|.+..+.-. -+...++.+.-.+.-.|+.+.|..++.......+.+..+-..+..+....|++++|.++...
T Consensus 149 r~~~Ar~ay~qAl~L~~-~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 149 RFDEARRAYRQALELAP-NEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred ChhHHHHHHHHHHHhcc-CCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence 66666666666665432 24455566666666666666666666666555555666666666666666666666665443
No 122
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.67 E-value=9.1e-06 Score=91.64 Aligned_cols=234 Identities=13% Similarity=0.085 Sum_probs=178.2
Q ss_pred HHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCC---ChHhHHHHHHHHHhcCChhhHHHHHHHHHH
Q 002666 215 FHQMQELGYEVSVHLFTTLIRVFAREGRVDDALFLLDEMKNN-AFSV---DIVLYNVCIDCFGKVGKVDMAWKFFHEMKA 290 (895)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 290 (895)
|++.... .|.+...|...+.-....++.+.|++++++++.. ++.. -...|.++++....-|.-+...++|+++.+
T Consensus 1447 ferlvrs-sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcq 1525 (1710)
T KOG1070|consen 1447 FERLVRS-SPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQ 1525 (1710)
T ss_pred HHHHHhc-CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHH
Confidence 4444433 2556678888888889999999999999998753 2222 234566677777777888888999999887
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhcCCC-CCHHH
Q 002666 291 QGVAPDDVTYTSMIGVLCKSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLFERLKQKGCI-PSVIA 369 (895)
Q Consensus 291 ~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~ 369 (895)
. .-....|..|...|.+.+.+++|.++|+.|.+.-- .....|...+..+.++++-+.|..++.++.+.-+. .....
T Consensus 1526 y--cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~-q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~ 1602 (1710)
T KOG1070|consen 1526 Y--CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG-QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEF 1602 (1710)
T ss_pred h--cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc-chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHH
Confidence 5 21234688899999999999999999999988644 47788999999999999999999999998875322 12445
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh--hhHHHHHHHHH
Q 002666 370 YNSLLTCLGKKGRVTEAMKIFEAMKKDARPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEAGLFPNV--MTVNIMVDRLC 447 (895)
Q Consensus 370 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~ 447 (895)
..-.+..-.+.|+.+.++.+|+......|.-...|+..++.-.++|+.+.+..+|+++...++.|-. ..|...+..--
T Consensus 1603 IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk 1682 (1710)
T KOG1070|consen 1603 ISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEK 1682 (1710)
T ss_pred HHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHH
Confidence 5566677778999999999999999999999999999999999999999999999999988776543 23444443333
Q ss_pred hcCCh
Q 002666 448 KAQKL 452 (895)
Q Consensus 448 ~~g~~ 452 (895)
..|+-
T Consensus 1683 ~~Gde 1687 (1710)
T KOG1070|consen 1683 SHGDE 1687 (1710)
T ss_pred hcCch
Confidence 33443
No 123
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.65 E-value=6e-06 Score=92.12 Aligned_cols=133 Identities=12% Similarity=0.142 Sum_probs=105.3
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC-HHHH
Q 002666 712 LTPNAYTWNCLLDALVKAEEISEAFVCFQSMKDLKCTPNH-VTYSIIINGLCRVRKFNKAFVFWQEMQKQGFKPN-TITY 789 (895)
Q Consensus 712 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~ 789 (895)
+..++..+..|+.+....|.+++|..+++.+.+ ..|+. .....++.++.+.+++++|+..+++..+. .|+ ...+
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~ 157 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREI 157 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHH
Confidence 444678888888888888888888888888888 44655 45557778888888888888888888874 444 5667
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 002666 790 TTMISGLAKAGNITEANGLFERFKENGGVP-DSACYNAMMEGLSNANRAMDAYTLFEETRRK 850 (895)
Q Consensus 790 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 850 (895)
..+..++.+.|++++|..+|++++. ..| +..++..++..+...|+.++|...|+++++.
T Consensus 158 ~~~a~~l~~~g~~~~A~~~y~~~~~--~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 158 LLEAKSWDEIGQSEQADACFERLSR--QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 7777788888888888888888887 444 4788888888888888888888888888776
No 124
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.65 E-value=1.8e-06 Score=76.51 Aligned_cols=106 Identities=10% Similarity=-0.002 Sum_probs=59.1
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 002666 300 YTSMIGVLCKSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLFERLKQKGCIPSVIAYNSLLTCLGK 379 (895)
Q Consensus 300 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 379 (895)
+..++..+...|++++|...|+..+...+. +..+|..++.++...|++++|...|+++...++ .+..++..++.++.+
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p-~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPW-SWRAHIALAGTWMMLKEYTTAINFYGHALMLDA-SHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHHH
Confidence 334455555566666666666665555543 555555555555566666666666666555432 245555555555555
Q ss_pred cCCHHHHHHHHHHHhcCCCCCHHHHHHH
Q 002666 380 KGRVTEAMKIFEAMKKDARPNNTTYNVL 407 (895)
Q Consensus 380 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l 407 (895)
.|++++|+..|+...+..|.+...+...
T Consensus 105 ~g~~~eAi~~~~~Al~~~p~~~~~~~~~ 132 (144)
T PRK15359 105 MGEPGLAREAFQTAIKMSYADASWSEIR 132 (144)
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 5566666555555555555555554443
No 125
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.65 E-value=1.3e-06 Score=77.45 Aligned_cols=104 Identities=7% Similarity=-0.127 Sum_probs=60.5
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhc
Q 002666 756 IIINGLCRVRKFNKAFVFWQEMQKQGFKPNTITYTTMISGLAKAGNITEANGLFERFKENGGVP-DSACYNAMMEGLSNA 834 (895)
Q Consensus 756 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~ 834 (895)
.+...+...|++++|...|+.+.... +.+..+|..++.++...|++++|...|+++++ ..| ++..+..++.++...
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~--l~p~~~~a~~~lg~~l~~~ 105 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALM--LDASHPEPVYQTGVCLKMM 105 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCCCCcHHHHHHHHHHHHc
Confidence 44555566666666666666665531 22455666666666666666666666666665 444 556666666666666
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHhhHHHHH
Q 002666 835 NRAMDAYTLFEETRRKGFNIHTKTCVILL 863 (895)
Q Consensus 835 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 863 (895)
|++++|+..|+++++.. |.+...+...+
T Consensus 106 g~~~eAi~~~~~Al~~~-p~~~~~~~~~~ 133 (144)
T PRK15359 106 GEPGLAREAFQTAIKMS-YADASWSEIRQ 133 (144)
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHH
Confidence 66666666666666553 44444443333
No 126
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.62 E-value=1.2e-05 Score=89.67 Aligned_cols=146 Identities=13% Similarity=0.150 Sum_probs=105.8
Q ss_pred CCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCCHHhHH
Q 002666 258 FSVDIVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGVAPDD-VTYTSMIGVLCKSKRLEEAVAMFEQMDRNREVPCAYAYN 336 (895)
Q Consensus 258 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 336 (895)
+..++..+-.|+....+.|++++|+.+++...+. .|+. .....++.++.+.+++++|+..+++.+...+. +.....
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~ 158 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREIL 158 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHH
Confidence 3556777777777888888888888888887775 4443 35666777777888888888888888877765 777777
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHH
Q 002666 337 TMIMGYGSVGKFDEAFSLFERLKQKGCIPSVIAYNSLLTCLGKKGRVTEAMKIFEAMKKDARPNNTTYNVL 407 (895)
Q Consensus 337 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 407 (895)
.+..++.+.|++++|..+|+++...+. -+..++..+...+...|+.++|...|+...+...+....|+.+
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~p-~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~ 228 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQHP-EFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRR 228 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHH
Confidence 777788888888888888888877432 2466777777777788888888888877766555555554443
No 127
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.62 E-value=6.4e-06 Score=77.35 Aligned_cols=124 Identities=9% Similarity=0.058 Sum_probs=64.8
Q ss_pred cCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCCHHhHHHHHHHH-HccCC--HHHH
Q 002666 275 VGKVDMAWKFFHEMKAQGVAPDDVTYTSMIGVLCKSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGY-GSVGK--FDEA 351 (895)
Q Consensus 275 ~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~A 351 (895)
.++.+++...++...+.+ +.|...|..++..|...|++++|+..|++.....+. +...+..++.++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHH
Confidence 344445555555544442 224445555555555555555555555555555544 555555555542 34444 3555
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCH
Q 002666 352 FSLFERLKQKGCIPSVIAYNSLLTCLGKKGRVTEAMKIFEAMKKDARPNN 401 (895)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 401 (895)
.+++++..+.++. +..++..++..+.+.|++++|+..|+++.+..|++.
T Consensus 130 ~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~ 178 (198)
T PRK10370 130 REMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRV 178 (198)
T ss_pred HHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 5555555555422 445555555555555666666666555555444443
No 128
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.60 E-value=3.1e-05 Score=87.54 Aligned_cols=206 Identities=14% Similarity=0.107 Sum_probs=118.5
Q ss_pred CCCHHhHHHHHHHHHccCChHHHHHHHHHHHHC-CCCC---CHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHH
Q 002666 608 VLDTRAYNTVVDGFCKSGKVNKAYQLLEEMKTK-GHYP---TVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNTVI 683 (895)
Q Consensus 608 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 683 (895)
+.++..|-..+..+.+.++.++|.++.++++.. ++.- -...|.++++....-|.-+...++|+++.+.. .....
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHH
Confidence 334556666666666777777777777766543 1111 11245555555555555566666666666542 12345
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH---HHHHHHHHH
Q 002666 684 YSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNAYTWNCLLDALVKAEEISEAFVCFQSMKDLKCTPNH---VTYSIIING 760 (895)
Q Consensus 684 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~l~~~ 760 (895)
|..|...|.+.+.+++|.++++.|.++ +......|..++..+.++.+-+.|..+++++++. -|.. ......+..
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqL 1609 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQL 1609 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHH
Confidence 566666666666666666666666663 2345556666666666666666666666666652 2332 222233444
Q ss_pred HHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 002666 761 LCRVRKFNKAFVFWQEMQKQGFKPNTITYTTMISGLAKAGNITEANGLFERFKENGGVP 819 (895)
Q Consensus 761 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 819 (895)
-.+.|+.+.+..+|+..+.. .+-....|+.++..-.++|+.+.++.+|++++..++.|
T Consensus 1610 EFk~GDaeRGRtlfEgll~a-yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1610 EFKYGDAERGRTLFEGLLSA-YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred HhhcCCchhhHHHHHHHHhh-CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 45566666666666666543 23334566666666666666666666666666655554
No 129
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.59 E-value=2e-05 Score=88.67 Aligned_cols=219 Identities=15% Similarity=0.124 Sum_probs=142.2
Q ss_pred ChHhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCCHHhHHHHH
Q 002666 261 DIVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGVAPDDV-TYTSMIGVLCKSKRLEEAVAMFEQMDRNREVPCAYAYNTMI 339 (895)
Q Consensus 261 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 339 (895)
+...+..|+..+...+++++|.++.++..+. .|+.. .|..++..+.+.++++.+.-+ . ++
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv--~---------------~l 90 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL--N---------------LI 90 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh--h---------------hh
Confidence 4667888999998999999999999987775 44443 455555577777776655544 2 23
Q ss_pred HHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 002666 340 MGYGSVGKFDEAFSLFERLKQKGCIPSVIAYNSLLTCLGKKGRVTEAMKIFEAMKKDARPNNTTYNVLIDMLCKAGNFED 419 (895)
Q Consensus 340 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 419 (895)
.......++.-...+...+...+ .+..++..++.+|-+.|+.++|..+|+++.+..|.|+.+.+.++..|... ++++
T Consensus 91 ~~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~K 167 (906)
T PRK14720 91 DSFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEK 167 (906)
T ss_pred hhcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHH
Confidence 33333344434444444455432 35568888888888999999999999988888888888999998888888 8888
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhhhCC-------------------CCCChhhHHHHHHH
Q 002666 420 ALKFRDAMKEAGLFPNVMTVNIMVDRLCKAQKLDEAFSIFEGMDHKT-------------------CTPDAVTFCSLIDG 480 (895)
Q Consensus 420 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------------------~~~~~~~~~~l~~~ 480 (895)
|.+++.+.+.. +...+++.++.+++.++.... ..--..++..+-..
T Consensus 168 A~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~ 232 (906)
T PRK14720 168 AITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEP 232 (906)
T ss_pred HHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHH
Confidence 88888877653 333344555555555444431 11122333444455
Q ss_pred HhhcCCHHHHHHHHHHHHhCCCCcchhhHHHHHHHHH
Q 002666 481 LGKNGRVDDAYKFYEKMLDTDQIPNAILYTSLIRNFF 517 (895)
Q Consensus 481 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 517 (895)
|-..++++++..+++.+++..+. |..+...++.+|.
T Consensus 233 y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 233 YKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred HhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 55556666666666666666543 5555555555554
No 130
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.57 E-value=7.7e-05 Score=75.67 Aligned_cols=186 Identities=15% Similarity=0.142 Sum_probs=120.1
Q ss_pred cCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHhHHHHH
Q 002666 190 PAFTAYTTLIGALATVRESNLMLNLFHQMQELGYEVSVHLFTTLIRVFAREGRVDDALFLLDEMKNNAFSVDIVLYNVCI 269 (895)
Q Consensus 190 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 269 (895)
|+.......+.+......-..+...+.+..+ +.........+..+...|++++|+..++.+.... +.|.+.+....
T Consensus 272 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~---~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~ 347 (484)
T COG4783 272 PDFQLARARIRAKYEALPNQQAADLLAKRSK---RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAG 347 (484)
T ss_pred ccHHHHHHHHHHHhccccccchHHHHHHHhC---ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 4444455555444333333333333322222 2334555666666677888888888888877653 44566666677
Q ss_pred HHHHhcCChhhHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCCH
Q 002666 270 DCFGKVGKVDMAWKFFHEMKAQGVAPD-DVTYTSMIGVLCKSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKF 348 (895)
Q Consensus 270 ~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 348 (895)
..+.+.|+.++|.+.++.+... .|+ ......+..+|.+.|++.+|+.+++......+. |...|..|..+|...|+.
T Consensus 348 ~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~-dp~~w~~LAqay~~~g~~ 424 (484)
T COG4783 348 DILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPE-DPNGWDLLAQAYAELGNR 424 (484)
T ss_pred HHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC-CchHHHHHHHHHHHhCch
Confidence 7788888888888888888875 444 556667777888888888888888888877766 778888888888888877
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC
Q 002666 349 DEAFSLFERLKQKGCIPSVIAYNSLLTCLGKKGRVTEAMKIFEAMKKDARPN 400 (895)
Q Consensus 349 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 400 (895)
.++.....+ .|.-.|+++.|+..+....+....+
T Consensus 425 ~~a~~A~AE------------------~~~~~G~~~~A~~~l~~A~~~~~~~ 458 (484)
T COG4783 425 AEALLARAE------------------GYALAGRLEQAIIFLMRASQQVKLG 458 (484)
T ss_pred HHHHHHHHH------------------HHHhCCCHHHHHHHHHHHHHhccCC
Confidence 666554443 3444566777776666665544333
No 131
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.56 E-value=3.5e-05 Score=71.40 Aligned_cols=250 Identities=12% Similarity=0.076 Sum_probs=158.5
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCCHH
Q 002666 584 HGLVKAGFAHETDQLFYAMKKQGCVLDTRAYNTVVDGFCKSGKVNKAYQLLEEMKTKGHYPTVVTYGSVIDGLAKIDRLD 663 (895)
Q Consensus 584 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 663 (895)
.-+.-.|.+..+...-...... +.+...-..+.++|...|.+...+.-. .. +-.|....+..+...+...++.+
T Consensus 16 Rn~fY~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~~~~eI---~~-~~~~~lqAvr~~a~~~~~e~~~~ 89 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQIVISEI---KE-GKATPLQAVRLLAEYLELESNKK 89 (299)
T ss_pred HHHHHhhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHccccccccccc---cc-ccCChHHHHHHHHHHhhCcchhH
Confidence 3344457777766554444332 134444445667777777765443322 22 22455555555555555555544
Q ss_pred HHH-HHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 002666 664 EAY-MLFEEAKSKGIELNTVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNAYTWNCLLDALVKAEEISEAFVCFQSM 742 (895)
Q Consensus 664 ~A~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 742 (895)
+-. ++.+.+.......+......-+..|+..|++++|.+...... +......=+..+.+..+.+-|...+++|
T Consensus 90 ~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~m 163 (299)
T KOG3081|consen 90 SILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKM 163 (299)
T ss_pred HHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 433 334444444333343444444556888899999988877621 2223333345567778888999999999
Q ss_pred HhcCCCCCHHHHHHHHHHHH----hcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 002666 743 KDLKCTPNHVTYSIIINGLC----RVRKFNKAFVFWQEMQKQGFKPNTITYTTMISGLAKAGNITEANGLFERFKENGGV 818 (895)
Q Consensus 743 ~~~~~~p~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 818 (895)
.+- .+..|.+.|..++. ..+++.+|.-+|++|-++ ..|++.+.+....++...|++++|..+++.++.+ ..
T Consensus 164 q~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k-d~ 238 (299)
T KOG3081|consen 164 QQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK-DA 238 (299)
T ss_pred Hcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc-cC
Confidence 872 34456665655543 345788999999999875 7888889999988899999999999999999885 23
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHC
Q 002666 819 PDSACYNAMMEGLSNANRAMDAY-TLFEETRRK 850 (895)
Q Consensus 819 p~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~ 850 (895)
.++.+...++-.-...|+..++. +.+.++...
T Consensus 239 ~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 239 KDPETLANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred CCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 37888888888777788776655 445555444
No 132
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.55 E-value=7.3e-05 Score=69.35 Aligned_cols=152 Identities=14% Similarity=0.103 Sum_probs=93.6
Q ss_pred HHHHHHhcCCHhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh---
Q 002666 303 MIGVLCKSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLFERLKQKGCIPSVIAYNSLLTCLGK--- 379 (895)
Q Consensus 303 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~--- 379 (895)
-+..|+..|++++|++..+... +..+...-+..+.+..+++.|.+.+++|.+.. +..+.+-|..++.+
T Consensus 114 aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~ 184 (299)
T KOG3081|consen 114 AAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLAT 184 (299)
T ss_pred hhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhc
Confidence 3345677777777777776621 33344444455667777777777777777652 55566666666553
Q ss_pred -cCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHH-HH
Q 002666 380 -KGRVTEAMKIFEAMKKDARPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEAGLFPNVMTVNIMVDRLCKAQKLDEA-FS 457 (895)
Q Consensus 380 -~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~ 457 (895)
.+.+..|.-+|+++....+|++.+.+.++.++...|++++|..++++.+.... .++.+...++-.-...|...++ .+
T Consensus 185 ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~-~dpetL~Nliv~a~~~Gkd~~~~~r 263 (299)
T KOG3081|consen 185 GGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA-KDPETLANLIVLALHLGKDAEVTER 263 (299)
T ss_pred cchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC-CCHHHHHHHHHHHHHhCCChHHHHH
Confidence 34567777777777777777777777777777777777777777777776542 2444544444444444444333 33
Q ss_pred HHHHhhh
Q 002666 458 IFEGMDH 464 (895)
Q Consensus 458 ~~~~~~~ 464 (895)
.+.+...
T Consensus 264 ~l~QLk~ 270 (299)
T KOG3081|consen 264 NLSQLKL 270 (299)
T ss_pred HHHHHHh
Confidence 3344433
No 133
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.53 E-value=6.9e-05 Score=68.95 Aligned_cols=188 Identities=13% Similarity=0.135 Sum_probs=109.1
Q ss_pred CChHHHHHHHHHHHh---CC-CCcCH-HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhH
Q 002666 171 KMLREAFDIIQTMRK---FK-FRPAF-TAYTTLIGALATVRESNLMLNLFHQMQELGYEVSVHLFTTLIRVFAREGRVDD 245 (895)
Q Consensus 171 ~~~~~A~~~~~~~~~---~~-~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 245 (895)
.+.++.++++..+.. .+ ..++. ..|..+.-+....|+.+.|..+++++... +|-+..+-..-+-.+-..|.+++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhchhh
Confidence 344555555555432 12 33333 23344445555667777777777776654 34344443333444455677777
Q ss_pred HHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHhh
Q 002666 246 ALFLLDEMKNNAFSVDIVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGVAPDDVTYTSMIGVLCKSKRLEEAVAMFEQMDR 325 (895)
Q Consensus 246 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 325 (895)
|.++++..++.+ +.|..++-.-+...-.+|+--+|++-+.+..+. +..|...|.-+...|...|++++|.-++++++-
T Consensus 105 A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 105 AIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred HHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 777777777665 455666655555666666666666666666665 455666777777777777777777777777666
Q ss_pred CCCCCCHHhHHHHHHHHHccC---CHHHHHHHHHHHHhcC
Q 002666 326 NREVPCAYAYNTMIMGYGSVG---KFDEAFSLFERLKQKG 362 (895)
Q Consensus 326 ~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~ 362 (895)
..|. +.-.+..+...+...| +++-|.++|.+.++..
T Consensus 183 ~~P~-n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 183 IQPF-NPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred cCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 5543 4445555555544443 3455666666666653
No 134
>PF12854 PPR_1: PPR repeat
Probab=98.46 E-value=2.6e-07 Score=57.35 Aligned_cols=32 Identities=44% Similarity=0.872 Sum_probs=18.8
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 002666 292 GVAPDDVTYTSMIGVLCKSKRLEEAVAMFEQM 323 (895)
Q Consensus 292 g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 323 (895)
|+.||..||++||.+||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45555556666666666666666666555554
No 135
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.46 E-value=3.9e-05 Score=77.69 Aligned_cols=138 Identities=20% Similarity=0.184 Sum_probs=72.5
Q ss_pred HHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCCHhH
Q 002666 691 FGKVGRIDEAYLIMEELMQKGLTPNAYTWNCLLDALVKAEEISEAFVCFQSMKDLKCTPN-HVTYSIIINGLCRVRKFNK 769 (895)
Q Consensus 691 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~ 769 (895)
+...|.+++|...++.+++. .+-|+..+......+.+.++.++|.+.+++++... |+ ....-.+..+|.+.|++.+
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~--P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALALD--PNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CCccHHHHHHHHHHHhcCChHH
Confidence 34455566666666665553 22245555555555566666666666666665522 33 2333345555556666666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002666 770 AFVFWQEMQKQGFKPNTITYTTMISGLAKAGNITEANGLFERFKENGGVPDSACYNAMMEGLSNANRAMDAYTLFEETRR 849 (895)
Q Consensus 770 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 849 (895)
|+.+++..... .+.|+..|..|..+|...|+..+|.... +..|.-.|++++|+.++....+
T Consensus 393 ai~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A~------------------AE~~~~~G~~~~A~~~l~~A~~ 453 (484)
T COG4783 393 AIRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLAR------------------AEGYALAGRLEQAIIFLMRASQ 453 (484)
T ss_pred HHHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHHH------------------HHHHHhCCCHHHHHHHHHHHHH
Confidence 66655555543 3444555666666666666555554322 2233334566666655555554
Q ss_pred C
Q 002666 850 K 850 (895)
Q Consensus 850 ~ 850 (895)
.
T Consensus 454 ~ 454 (484)
T COG4783 454 Q 454 (484)
T ss_pred h
Confidence 4
No 136
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=98.43 E-value=0.0028 Score=63.76 Aligned_cols=79 Identities=11% Similarity=0.130 Sum_probs=57.5
Q ss_pred HHHHHCCCCCC----HHHHHHHHHH--HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002666 775 QEMQKQGFKPN----TITYTTMISG--LAKAGNITEANGLFERFKENGGVPDSACYNAMMEGLSNANRAMDAYTLFEETR 848 (895)
Q Consensus 775 ~~~~~~~~~p~----~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 848 (895)
+-+.+.|+.|- ...-|.|..+ +..+|++.++.-.-.-+.+ +.|++.+|..++-.+....++++|..++..+
T Consensus 445 ~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L- 521 (549)
T PF07079_consen 445 DFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL- 521 (549)
T ss_pred HHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC-
Confidence 33334466663 3466667666 6678899888877777766 8888899998888888888999998888875
Q ss_pred HCCCCCCHhhHH
Q 002666 849 RKGFNIHTKTCV 860 (895)
Q Consensus 849 ~~~~~~~~~~~~ 860 (895)
||+..++.
T Consensus 522 ----P~n~~~~d 529 (549)
T PF07079_consen 522 ----PPNERMRD 529 (549)
T ss_pred ----CCchhhHH
Confidence 66655443
No 137
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.40 E-value=1.2e-05 Score=71.22 Aligned_cols=110 Identities=18% Similarity=0.146 Sum_probs=69.6
Q ss_pred HHHHHhhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCC
Q 002666 319 MFEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLFERLKQKGCIPSVIAYNSLLTCLGKKGRVTEAMKIFEAMKKDAR 398 (895)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 398 (895)
.|++++...+. +......++..+...|++++|...++.+...+. .+...+..+..++...|++++|...++...+..|
T Consensus 5 ~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p 82 (135)
T TIGR02552 5 TLKDLLGLDSE-QLEQIYALAYNLYQQGRYDEALKLFQLLAAYDP-YNSRYWLGLAACCQMLKEYEEAIDAYALAAALDP 82 (135)
T ss_pred hHHHHHcCChh-hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 34444444443 444555566666666666666666666666542 2555666666666666777777777766666666
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 002666 399 PNNTTYNVLIDMLCKAGNFEDALKFRDAMKEA 430 (895)
Q Consensus 399 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 430 (895)
.+...+..++.++...|++++|...++...+.
T Consensus 83 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 83 DDPRPYFHAAECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 66666777777777777777777777766664
No 138
>PF12854 PPR_1: PPR repeat
Probab=98.35 E-value=5.8e-07 Score=55.79 Aligned_cols=33 Identities=45% Similarity=0.751 Sum_probs=26.6
Q ss_pred CCCCChHhHHHHHHHHHhcCChhhHHHHHHHHH
Q 002666 257 AFSVDIVLYNVCIDCFGKVGKVDMAWKFFHEMK 289 (895)
Q Consensus 257 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 289 (895)
|+.||..+|+.+|++||+.|++++|.++|++|.
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 567888888888888888888888888888773
No 139
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.33 E-value=0.00016 Score=62.92 Aligned_cols=139 Identities=16% Similarity=0.150 Sum_probs=72.8
Q ss_pred CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHH
Q 002666 749 PNHVTYSIIINGLCRVRKFNKAFVFWQEMQKQGFKPNTITYTTMISGLAKAGNITEANGLFERFKENGGVP---DSACYN 825 (895)
Q Consensus 749 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p---~~~~~~ 825 (895)
|....-..|..++.+.|++.||...|++...--+.-|......+.++....+++..|...++++.+. .| ++....
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~--~pa~r~pd~~L 164 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEY--NPAFRSPDGHL 164 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhc--CCccCCCCchH
Confidence 4444444555555555666666666555554323334555555555555556666666666555552 22 233444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhhhh
Q 002666 826 AMMEGLSNANRAMDAYTLFEETRRKGFNIHTKTCVILLDALHKAECLEQAAIVGAVLRETAKSQHA 891 (895)
Q Consensus 826 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 891 (895)
.+++.|...|++.+|..-|+.++.. -|.......-+..+.+.|+..+|..-...+.+..++..|
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~~~r~~~ 228 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAVVDTAKRSRP 228 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcch
Confidence 5555555566666566656555554 344444444445555555555555444445444444444
No 140
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=98.30 E-value=0.0058 Score=61.63 Aligned_cols=204 Identities=17% Similarity=0.200 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHH-------HHHHHHHcc----CChHHHHHHHHHHHHCCCCCC
Q 002666 577 QSYSILIHGLVKAGFAHETDQLFYAMKKQGCVLDTRAYN-------TVVDGFCKS----GKVNKAYQLLEEMKTKGHYPT 645 (895)
Q Consensus 577 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-------~l~~~~~~~----g~~~~A~~~~~~~~~~~~~p~ 645 (895)
.++..++...++.++...|.+.+.-+.-. .|+...-. .+.+..+.. -+..+=+.+++.....++. .
T Consensus 299 ~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiD-r 375 (549)
T PF07079_consen 299 DRFGNLLSFKVKQVQTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDID-R 375 (549)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccc-H
Confidence 45566666677777777777776655543 22222111 111222211 1222333444444433221 1
Q ss_pred HHhHHHHH---HHHHccCC-HHHHHHHHHHHHHcCCCcCHHHHHHHH----HHHHc---cCCHHHHHHHHHHHHHCCCCC
Q 002666 646 VVTYGSVI---DGLAKIDR-LDEAYMLFEEAKSKGIELNTVIYSSLI----DGFGK---VGRIDEAYLIMEELMQKGLTP 714 (895)
Q Consensus 646 ~~~~~~l~---~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~l~----~~~~~---~g~~~~A~~~~~~~~~~~~~p 714 (895)
......++ .-+.+.|. -++|+.+++.+++.. +.|...-+.+. ..|.. ...+.+-.++-+-+.+.|++|
T Consensus 376 qQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~ 454 (549)
T PF07079_consen 376 QQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTP 454 (549)
T ss_pred HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCc
Confidence 11111122 22344444 566777777776642 33443333221 11211 122333334434444456655
Q ss_pred ----CHHHHHHHHHH--HHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHH
Q 002666 715 ----NAYTWNCLLDA--LVKAEEISEAFVCFQSMKDLKCTPNHVTYSIIINGLCRVRKFNKAFVFWQEMQKQGFKPNTIT 788 (895)
Q Consensus 715 ----~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 788 (895)
+...-|.|.++ +..+|++.++.-.-.-+.+ +.|++.+|..++-++...++|++|..++.. ++|+..+
T Consensus 455 i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~-----LP~n~~~ 527 (549)
T PF07079_consen 455 ITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQK-----LPPNERM 527 (549)
T ss_pred ccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHh-----CCCchhh
Confidence 23334444433 3456666666655555554 556666666666666666677777766654 3455555
Q ss_pred HHH
Q 002666 789 YTT 791 (895)
Q Consensus 789 ~~~ 791 (895)
++.
T Consensus 528 ~ds 530 (549)
T PF07079_consen 528 RDS 530 (549)
T ss_pred HHH
Confidence 443
No 141
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.30 E-value=0.0004 Score=68.69 Aligned_cols=279 Identities=14% Similarity=0.045 Sum_probs=146.9
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCC-CHHHHHHHHHHHHh
Q 002666 231 TTLIRVFAREGRVDDALFLLDEMKNNAFSVDIVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGVAP-DDVTYTSMIGVLCK 309 (895)
Q Consensus 231 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~ 309 (895)
......+.+..++.+|+..+....+.. +.+...|..-+..+...|++++|.--.+.-++. +| ....+.....++..
T Consensus 53 k~~gn~~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~--kd~~~k~~~r~~~c~~a 129 (486)
T KOG0550|consen 53 KEEGNAFYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDARQSVRL--KDGFSKGQLREGQCHLA 129 (486)
T ss_pred HhhcchHHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchhhheec--CCCccccccchhhhhhh
Confidence 334455555556666666666555553 222334444444455555555555544444332 11 11233334444444
Q ss_pred cCCHhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhcCCC-CCHHHHHHH-HHHHHhcCCHHHHH
Q 002666 310 SKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLFERLKQKGCI-PSVIAYNSL-LTCLGKKGRVTEAM 387 (895)
Q Consensus 310 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l-~~~~~~~g~~~~A~ 387 (895)
.++..+|.+.++. ...+ ....|+..++........ |.-..+..+ ..++.-.|++++|.
T Consensus 130 ~~~~i~A~~~~~~---------~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~ 189 (486)
T KOG0550|consen 130 LSDLIEAEEKLKS---------KQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQ 189 (486)
T ss_pred hHHHHHHHHHhhh---------hhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHH
Confidence 4444444444441 0001 111222222322222211 222333322 34566778888888
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHH-------------HHHHHHhcCChhH
Q 002666 388 KIFEAMKKDARPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEAGLFPNVMTVNI-------------MVDRLCKAQKLDE 454 (895)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-------------l~~~~~~~g~~~~ 454 (895)
+.--.+.+..+.+......-..++.-.++.+.|...|++.+..+ |+...-.. -..-..+.|.+..
T Consensus 190 ~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~ 267 (486)
T KOG0550|consen 190 SEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRK 267 (486)
T ss_pred HHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhH
Confidence 88888887777777777777777777888888888888887754 44332211 1223445566666
Q ss_pred HHHHHHHhhhCC---CCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHH
Q 002666 455 AFSIFEGMDHKT---CTPDAVTFCSLIDGLGKNGRVDDAYKFYEKMLDTDQIPNAILYTSLIRNFFKHGRKEDGHKIYKE 531 (895)
Q Consensus 455 A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 531 (895)
|.+.+.+.+..+ ..+++..|........+.|+.++|+.-.+.+++.+.. -...+..-+.++...++|++|.+-++.
T Consensus 268 A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~s-yikall~ra~c~l~le~~e~AV~d~~~ 346 (486)
T KOG0550|consen 268 AYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSS-YIKALLRRANCHLALEKWEEAVEDYEK 346 (486)
T ss_pred HHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666655442 2344445555555666666666666666666655321 223344444555556666666666666
Q ss_pred HHHc
Q 002666 532 MVQR 535 (895)
Q Consensus 532 ~~~~ 535 (895)
..+.
T Consensus 347 a~q~ 350 (486)
T KOG0550|consen 347 AMQL 350 (486)
T ss_pred HHhh
Confidence 6554
No 142
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.29 E-value=3.2e-05 Score=68.44 Aligned_cols=96 Identities=13% Similarity=0.074 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHH
Q 002666 752 VTYSIIINGLCRVRKFNKAFVFWQEMQKQGFKPNTITYTTMISGLAKAGNITEANGLFERFKENGGVP-DSACYNAMMEG 830 (895)
Q Consensus 752 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~ 830 (895)
.....++..+...|++++|...++.+.+.+ +.+...|..+..++...|++++|...+++.++ ..| +...+..++..
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~la~~ 94 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAA--LDPDDPRPYFHAAEC 94 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCCChHHHHHHHHH
Confidence 334455556666666666666666665532 23455666666666666666777666666665 334 45666666666
Q ss_pred HHhcCCHHHHHHHHHHHHHC
Q 002666 831 LSNANRAMDAYTLFEETRRK 850 (895)
Q Consensus 831 ~~~~g~~~~A~~~~~~~~~~ 850 (895)
+...|++++|...+++.++.
T Consensus 95 ~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 95 LLALGEPESALKALDLAIEI 114 (135)
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 66667777777776666665
No 143
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.24 E-value=6.6e-05 Score=74.02 Aligned_cols=284 Identities=14% Similarity=-0.009 Sum_probs=167.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHc
Q 002666 579 YSILIHGLVKAGFAHETDQLFYAMKKQGCVLDTRAYNTVVDGFCKSGKVNKAYQLLEEMKTKGHYPTVVTYGSVIDGLAK 658 (895)
Q Consensus 579 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 658 (895)
.......+.+...+..|+..+...++.. +.+...|..-+..+...|++++|.--.++-.+.... ...........+..
T Consensus 52 ~k~~gn~~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~-~~k~~~r~~~c~~a 129 (486)
T KOG0550|consen 52 AKEEGNAFYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDG-FSKGQLREGQCHLA 129 (486)
T ss_pred HHhhcchHHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchhhheecCCC-ccccccchhhhhhh
Confidence 3445556777778888888888888774 334556666666677777777777666555443211 22244445555666
Q ss_pred cCCHHHHHHHHHHHHH-----------c----C-CCcCHHHHHHH-HHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 002666 659 IDRLDEAYMLFEEAKS-----------K----G-IELNTVIYSSL-IDGFGKVGRIDEAYLIMEELMQKGLTPNAYTWNC 721 (895)
Q Consensus 659 ~~~~~~A~~~~~~~~~-----------~----~-~~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 721 (895)
.++..+|.+.++.-.. . . -+|.-..+..+ ..++.-.|++++|..+--..++..- .+......
T Consensus 130 ~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~-~n~~al~v 208 (486)
T KOG0550|consen 130 LSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDA-TNAEALYV 208 (486)
T ss_pred hHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhccc-chhHHHHh
Confidence 6666666666653210 0 0 01111222222 2345567888888888777776321 13333333
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHH-------------HHHHHHHhcCCHhHHHHHHHHHHHC---CCCCC
Q 002666 722 LLDALVKAEEISEAFVCFQSMKDLKCTPNHVTYS-------------IIINGLCRVRKFNKAFVFWQEMQKQ---GFKPN 785 (895)
Q Consensus 722 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~-------------~l~~~~~~~g~~~~A~~~~~~~~~~---~~~p~ 785 (895)
-..++.-.++.+.|...|++.+..+ |+...-- .-.+-..+.|++.+|.+.|.+.+.. +..|+
T Consensus 209 rg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~n 286 (486)
T KOG0550|consen 209 RGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTN 286 (486)
T ss_pred cccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchh
Confidence 3344555778888888888888744 6543211 1223345778888888888888753 23333
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHhhHHHHH
Q 002666 786 TITYTTMISGLAKAGNITEANGLFERFKENGGVPD-SACYNAMMEGLSNANRAMDAYTLFEETRRKGFN-IHTKTCVILL 863 (895)
Q Consensus 786 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~ 863 (895)
...|.....+..+.|+..+|+.--+.++. +.|. ...+..-+.++...++|++|.+-+++..+..-. ....++....
T Consensus 287 aklY~nra~v~~rLgrl~eaisdc~~Al~--iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s~e~r~~l~~A~ 364 (486)
T KOG0550|consen 287 AKLYGNRALVNIRLGRLREAISDCNEALK--IDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKDCEIRRTLREAQ 364 (486)
T ss_pred HHHHHHhHhhhcccCCchhhhhhhhhhhh--cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHH
Confidence 45566666667788888888888888776 5442 344444555666778888888888887766322 2333444444
Q ss_pred HHHHhc
Q 002666 864 DALHKA 869 (895)
Q Consensus 864 ~~~~~~ 869 (895)
..+.++
T Consensus 365 ~aLkkS 370 (486)
T KOG0550|consen 365 LALKKS 370 (486)
T ss_pred HHHHHh
Confidence 444433
No 144
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.18 E-value=3.6e-05 Score=66.58 Aligned_cols=94 Identities=14% Similarity=0.006 Sum_probs=60.6
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHH
Q 002666 753 TYSIIINGLCRVRKFNKAFVFWQEMQKQGFKP-NTITYTTMISGLAKAGNITEANGLFERFKENGGVP-DSACYNAMMEG 830 (895)
Q Consensus 753 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~ 830 (895)
..-.+...+...|++++|..+|+-+.. +.| +..-|..|..++...|++++|+..|.++.. ..| |+..+..++.+
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~--~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~--L~~ddp~~~~~ag~c 112 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTI--YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQ--IKIDAPQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCCCCchHHHHHHHH
Confidence 333455556666777777777776665 333 345566666667777777777777777766 444 56667777777
Q ss_pred HHhcCCHHHHHHHHHHHHHC
Q 002666 831 LSNANRAMDAYTLFEETRRK 850 (895)
Q Consensus 831 ~~~~g~~~~A~~~~~~~~~~ 850 (895)
+...|+.++|++.|+.++..
T Consensus 113 ~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 113 YLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 77777777777777766554
No 145
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.16 E-value=9.9e-05 Score=76.08 Aligned_cols=120 Identities=13% Similarity=0.078 Sum_probs=67.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 002666 722 LLDALVKAEEISEAFVCFQSMKDLKCTPNHVTYSIIINGLCRVRKFNKAFVFWQEMQKQGFKPNTITYTTMISGLAKAGN 801 (895)
Q Consensus 722 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 801 (895)
|+..+...++++.|+++++++.+.. |+. ...++..+...++..+|++++++.++. .+-+...+......|...|+
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCC
Confidence 3344444566666666666666533 432 233555555556666666666666543 22244444444555666666
Q ss_pred HHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002666 802 ITEANGLFERFKENGGVP-DSACYNAMMEGLSNANRAMDAYTLFEETR 848 (895)
Q Consensus 802 ~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 848 (895)
++.|+++.+++.+ ..| +..+|..|+.+|.+.|++++|+..++.+.
T Consensus 250 ~~lAL~iAk~av~--lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 250 YELALEIAKKAVE--LSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHHHH--hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 6666666666666 455 45566666666666666666666655543
No 146
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=98.16 E-value=3.3e-05 Score=75.69 Aligned_cols=282 Identities=15% Similarity=0.087 Sum_probs=132.1
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCC---CCHHhHHHHHHHHHccCChHHHHHHHHHHHH--C--CCC-CCHHhHHHHHHH
Q 002666 584 HGLVKAGFAHETDQLFYAMKKQGCV---LDTRAYNTVVDGFCKSGKVNKAYQLLEEMKT--K--GHY-PTVVTYGSVIDG 655 (895)
Q Consensus 584 ~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~--~~~-p~~~~~~~l~~~ 655 (895)
.-+|+.|+......+|+..++.|.. .=+.+|..|.++|.-.+++++|+++...=+. + |-+ -.......+.+.
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt 104 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT 104 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence 3478888888888888888887632 1145677777888888888888887653221 1 111 112233345555
Q ss_pred HHccCCHHHHHHHHHHHH----HcCCC-cCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 002666 656 LAKIDRLDEAYMLFEEAK----SKGIE-LNTVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNAYTWNCLLDALVKAE 730 (895)
Q Consensus 656 ~~~~~~~~~A~~~~~~~~----~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 730 (895)
+.-.|.+++|+-...+-+ +.|-. .....+..+...|...|+-..... -.+.|-.++.++ .
T Consensus 105 lKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~----pee~g~f~~ev~-----------~ 169 (639)
T KOG1130|consen 105 LKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEA----PEEKGAFNAEVT-----------S 169 (639)
T ss_pred hhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCC----hhhcccccHHHH-----------H
Confidence 566677777665544322 22211 122334445555555442100000 000000000000 0
Q ss_pred CHHHHHHHHHHHHh----cCCC-CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH----CCCCC-CHHHHHHHHHHHHhcC
Q 002666 731 EISEAFVCFQSMKD----LKCT-PNHVTYSIIINGLCRVRKFNKAFVFWQEMQK----QGFKP-NTITYTTMISGLAKAG 800 (895)
Q Consensus 731 ~~~~A~~~~~~~~~----~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p-~~~~~~~l~~~~~~~g 800 (895)
.++.|.+.|.+-++ .|-. .--..|-.|.+.|.-.|+++.|+...+.-++ -|-.. ....+..+..++.-.|
T Consensus 170 al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg 249 (639)
T KOG1130|consen 170 ALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLG 249 (639)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhc
Confidence 11222222222111 0000 0012334444445555566666554432221 12111 1235555666666666
Q ss_pred CHHHHHHHHHHHHH----CCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCCCHhhHHHHHHHHHhcC
Q 002666 801 NITEANGLFERFKE----NGGV-PDSACYNAMMEGLSNANRAMDAYTLFEETRRK-----GFNIHTKTCVILLDALHKAE 870 (895)
Q Consensus 801 ~~~~A~~~~~~~~~----~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g 870 (895)
+++.|.+.|+.... .|.. ........|+..|.-..++++|+.++.+-+.- .......+++.|+.+|...|
T Consensus 250 ~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg 329 (639)
T KOG1130|consen 250 NFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALG 329 (639)
T ss_pred ccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhh
Confidence 66666666555422 1211 13344455666666666666666665543221 11233455666666666666
Q ss_pred CHHHHHHHHH
Q 002666 871 CLEQAAIVGA 880 (895)
Q Consensus 871 ~~~~A~~~~~ 880 (895)
..++|.....
T Consensus 330 ~h~kAl~fae 339 (639)
T KOG1130|consen 330 EHRKALYFAE 339 (639)
T ss_pred hHHHHHHHHH
Confidence 6666654333
No 147
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.14 E-value=0.00014 Score=64.79 Aligned_cols=114 Identities=20% Similarity=0.214 Sum_probs=47.7
Q ss_pred cCCHhHHHHHHHHHhhCCCCCC---HHhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCCHH
Q 002666 310 SKRLEEAVAMFEQMDRNREVPC---AYAYNTMIMGYGSVGKFDEAFSLFERLKQKGCIPS--VIAYNSLLTCLGKKGRVT 384 (895)
Q Consensus 310 ~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~ 384 (895)
.++...+...++.+....+. + ..+...+...+...|++++|...|+.+......|. ......|..++...|+++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~-s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPS-SPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 44444444444444444332 1 12222233444445555555555555544431111 112333444444444444
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 002666 385 EAMKIFEAMKKDARPNNTTYNVLIDMLCKAGNFEDALKFRD 425 (895)
Q Consensus 385 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 425 (895)
+|+..++... ..+..+..+...+.+|...|++++|...|+
T Consensus 103 ~Al~~L~~~~-~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~ 142 (145)
T PF09976_consen 103 EALATLQQIP-DEAFKALAAELLGDIYLAQGDYDEARAAYQ 142 (145)
T ss_pred HHHHHHHhcc-CcchHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 4444443321 122233344444444455555555544444
No 148
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=98.13 E-value=3.3e-05 Score=75.70 Aligned_cols=284 Identities=11% Similarity=0.042 Sum_probs=137.9
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHH--HHc--CC-CCCHHhHHHHHH
Q 002666 549 DCVFKAGETEKGRALFEEIKAQGFVPDV----QSYSILIHGLVKAGFAHETDQLFYAM--KKQ--GC-VLDTRAYNTVVD 619 (895)
Q Consensus 549 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~--~~-~~~~~~~~~l~~ 619 (895)
.-+|+.|+......+|+.++.-|-. |. ..|..|.++|.-.+++++|.++...= +.+ |- .-.......|.+
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 4689999999999999999998733 43 45677778888888899988765321 111 10 112334445666
Q ss_pred HHHccCChHHHHHHHHHHHH----CCCC-CCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHcc
Q 002666 620 GFCKSGKVNKAYQLLEEMKT----KGHY-PTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNTVIYSSLIDGFGKV 694 (895)
Q Consensus 620 ~~~~~g~~~~A~~~~~~~~~----~~~~-p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 694 (895)
.+--.|.+++|+-...+-+. .|-. .....+..+...|...|+--.. ....+.|-.++.+ -
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~----~~pee~g~f~~ev-~---------- 168 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGL----EAPEEKGAFNAEV-T---------- 168 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCC----CChhhcccccHHH-H----------
Confidence 66677888888877654432 2211 1223444556666544431000 0000001000000 0
Q ss_pred CCHHHHHHHHHHHHH----CCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----cCCC-CCHHHHHHHHHHHHhc
Q 002666 695 GRIDEAYLIMEELMQ----KGLT-PNAYTWNCLLDALVKAEEISEAFVCFQSMKD----LKCT-PNHVTYSIIINGLCRV 764 (895)
Q Consensus 695 g~~~~A~~~~~~~~~----~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~-p~~~~~~~l~~~~~~~ 764 (895)
..++.|.++|.+-++ .|-. .--.+|..|.+.|.-.|+++.|+..-+.-+. .|-. .....+..+.+++...
T Consensus 169 ~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hifl 248 (639)
T KOG1130|consen 169 SALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFL 248 (639)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhh
Confidence 011222222222111 0000 0112344455555555555555544332221 1100 1123445555666666
Q ss_pred CCHhHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHHhc
Q 002666 765 RKFNKAFVFWQEMQKQ----GF-KPNTITYTTMISGLAKAGNITEANGLFERFKEN-----GGVPDSACYNAMMEGLSNA 834 (895)
Q Consensus 765 g~~~~A~~~~~~~~~~----~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~p~~~~~~~l~~~~~~~ 834 (895)
|+++.|.+.|+..... |- .........|...|.-..++++|+.++.+-+.- ........+..|+.++-..
T Consensus 249 g~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~al 328 (639)
T KOG1130|consen 249 GNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNAL 328 (639)
T ss_pred cccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 6666666665544322 11 111233445555555555666666655543221 1122345556666666666
Q ss_pred CCHHHHHHHHHHHH
Q 002666 835 NRAMDAYTLFEETR 848 (895)
Q Consensus 835 g~~~~A~~~~~~~~ 848 (895)
|..++|+.+.+..+
T Consensus 329 g~h~kAl~fae~hl 342 (639)
T KOG1130|consen 329 GEHRKALYFAELHL 342 (639)
T ss_pred hhHHHHHHHHHHHH
Confidence 66666666655544
No 149
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.13 E-value=0.00012 Score=65.37 Aligned_cols=116 Identities=18% Similarity=0.174 Sum_probs=62.1
Q ss_pred cCCHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh--hhHHHHHHHHHhcCChhH
Q 002666 380 KGRVTEAMKIFEAMKKDARPN---NTTYNVLIDMLCKAGNFEDALKFRDAMKEAGLFPNV--MTVNIMVDRLCKAQKLDE 454 (895)
Q Consensus 380 ~g~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~ 454 (895)
.++...+...++.+.+..|.+ ..+...++..+...|++++|...|+.+......|+. .....+...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 555555555555555544444 233444556666666666666666666654411211 122334555556666666
Q ss_pred HHHHHHHhhhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHH
Q 002666 455 AFSIFEGMDHKTCTPDAVTFCSLIDGLGKNGRVDDAYKFYEKM 497 (895)
Q Consensus 455 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 497 (895)
|+..++..... ...+..+...+.++.+.|+.++|...|+..
T Consensus 104 Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 104 ALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 66666553322 223344555666666666666666666553
No 150
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.08 E-value=0.00013 Score=75.29 Aligned_cols=126 Identities=15% Similarity=0.162 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 002666 682 VIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNAYTWNCLLDALVKAEEISEAFVCFQSMKDLKCTPNHVTYSIIINGL 761 (895)
Q Consensus 682 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 761 (895)
.....++..+...++++.|+.+++++.+.. |+. ...++..+...++-.+|++++++.++.. +-+...+..-+..|
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fL 244 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFL 244 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 344566677777899999999999999854 554 4457888888899999999999999743 44566666777889
Q ss_pred HhcCCHhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002666 762 CRVRKFNKAFVFWQEMQKQGFKPN-TITYTTMISGLAKAGNITEANGLFERFKE 814 (895)
Q Consensus 762 ~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 814 (895)
...++++.|+++.+++.+ ..|+ ..+|..|+.+|...|+++.|+-.++.+--
T Consensus 245 l~k~~~~lAL~iAk~av~--lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVE--LSPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred HhcCCHHHHHHHHHHHHH--hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 999999999999999998 5566 45999999999999999999988887753
No 151
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.04 E-value=9.8e-06 Score=64.21 Aligned_cols=80 Identities=19% Similarity=0.178 Sum_probs=49.8
Q ss_pred cCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHH
Q 002666 799 AGNITEANGLFERFKENGG-VPDSACYNAMMEGLSNANRAMDAYTLFEETRRKGFNIHTKTCVILLDALHKAECLEQAAI 877 (895)
Q Consensus 799 ~g~~~~A~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 877 (895)
.|+++.|+.+++++++... .|+...+..++.+|++.|++++|+.++++ ...+ +.+......++.++.+.|++++|+.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 4677777777777777322 11345555677777777777777777776 2222 3344556666777777777777776
Q ss_pred HHH
Q 002666 878 VGA 880 (895)
Q Consensus 878 ~~~ 880 (895)
+..
T Consensus 80 ~l~ 82 (84)
T PF12895_consen 80 ALE 82 (84)
T ss_dssp HHH
T ss_pred HHh
Confidence 544
No 152
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.00 E-value=0.00016 Score=68.82 Aligned_cols=97 Identities=20% Similarity=0.201 Sum_probs=60.0
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHhcC
Q 002666 688 IDGFGKVGRIDEAYLIMEELMQKGLTP-NAYTWNCLLDALVKAEEISEAFVCFQSMKDLKCTPNH-VTYSIIINGLCRVR 765 (895)
Q Consensus 688 ~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g 765 (895)
..-..+.+++++|+..|.++++ +.| |++.|..-..+|.+.|.++.|++-.+..+. +.|.. .+|..|..+|...|
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~g 163 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALG 163 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccC
Confidence 3445556666667766666666 334 555566666666666666666666666665 33433 45666666666666
Q ss_pred CHhHHHHHHHHHHHCCCCCCHHHHH
Q 002666 766 KFNKAFVFWQEMQKQGFKPNTITYT 790 (895)
Q Consensus 766 ~~~~A~~~~~~~~~~~~~p~~~~~~ 790 (895)
++++|++.|++.++ +.|+..+|-
T Consensus 164 k~~~A~~aykKaLe--ldP~Ne~~K 186 (304)
T KOG0553|consen 164 KYEEAIEAYKKALE--LDPDNESYK 186 (304)
T ss_pred cHHHHHHHHHhhhc--cCCCcHHHH
Confidence 66666666666665 566655443
No 153
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.95 E-value=0.0019 Score=56.50 Aligned_cols=133 Identities=16% Similarity=0.132 Sum_probs=94.9
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC---HHH
Q 002666 712 LTPNAYTWNCLLDALVKAEEISEAFVCFQSMKDLKCTPNHVTYSIIINGLCRVRKFNKAFVFWQEMQKQGFKPN---TIT 788 (895)
Q Consensus 712 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~ 788 (895)
..|+...-..|..++...|+..+|...|++...--...|......+.++....+++.+|...++++-+.+ |. +.+
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~--pa~r~pd~ 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYN--PAFRSPDG 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcC--CccCCCCc
Confidence 3466666667778888888888888888888763334566666777778888888888888888777642 32 334
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002666 789 YTTMISGLAKAGNITEANGLFERFKENGGVPDSACYNAMMEGLSNANRAMDAYTLFEETR 848 (895)
Q Consensus 789 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 848 (895)
...+.+.+...|+.++|...|+.++. .-|++..-...+..+.++|+.++|..-+..+.
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~~--~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAIS--YYPGPQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHHH--hCCCHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 55567778888888888888888887 66776666666777788887777766655543
No 154
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.94 E-value=0.031 Score=59.43 Aligned_cols=206 Identities=11% Similarity=0.116 Sum_probs=117.1
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH----------HHhcCChhHHHHHHHHhhhCC
Q 002666 397 ARPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEAGLFPNVMTVNIMVDR----------LCKAQKLDEAFSIFEGMDHKT 466 (895)
Q Consensus 397 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~----------~~~~g~~~~A~~~~~~~~~~~ 466 (895)
..|.+..|..++......-.++.|...|-+...- +.......+-.. -.--|++++|.+++-++..++
T Consensus 688 dnPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY---~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD 764 (1189)
T KOG2041|consen 688 DNPHPRLWRLLAEYALFKLALDTAEHAFVRCGDY---AGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD 764 (1189)
T ss_pred cCCchHHHHHHHHHHHHHHhhhhHhhhhhhhccc---cchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh
Confidence 3566777777777777777777777666555431 222111111111 112378888888887766552
Q ss_pred CCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhC-CCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHH
Q 002666 467 CTPDAVTFCSLIDGLGKNGRVDDAYKFYEKMLDT-DQIPNAILYTSLIRNFFKHGRKEDGHKIYKEMVQRGCSPDLMLLN 545 (895)
Q Consensus 467 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 545 (895)
..+..+.+.|++-...++++.--.. +-..-..++..++..+.....|++|.+.|..... ..
T Consensus 765 ---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~---------~e 826 (1189)
T KOG2041|consen 765 ---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD---------TE 826 (1189)
T ss_pred ---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------hH
Confidence 2355566777776666555432110 0011234677788888888888888888765432 13
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccC
Q 002666 546 TYMDCVFKAGETEKGRALFEEIKAQGFVPDVQSYSILIHGLVKAGFAHETDQLFYAMKKQGCVLDTRAYNTVVDGFCKSG 625 (895)
Q Consensus 546 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 625 (895)
.++.++.+...+++-..+...+ +.+....-.+..++.+.|.-++|.+.+-+... | ...+..|...+
T Consensus 827 ~~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~----p-----kaAv~tCv~Ln 892 (1189)
T KOG2041|consen 827 NQIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRRSL----P-----KAAVHTCVELN 892 (1189)
T ss_pred hHHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhccC----c-----HHHHHHHHHHH
Confidence 4556666666666655444433 23445556677777777777777765533221 1 12344566666
Q ss_pred ChHHHHHHHHHH
Q 002666 626 KVNKAYQLLEEM 637 (895)
Q Consensus 626 ~~~~A~~~~~~~ 637 (895)
++.+|.++-+..
T Consensus 893 QW~~avelaq~~ 904 (1189)
T KOG2041|consen 893 QWGEAVELAQRF 904 (1189)
T ss_pred HHHHHHHHHHhc
Confidence 777776665543
No 155
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.94 E-value=0.00029 Score=60.58 Aligned_cols=96 Identities=11% Similarity=0.085 Sum_probs=53.9
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-C-CHHHHHH
Q 002666 753 TYSIIINGLCRVRKFNKAFVFWQEMQKQGFKPN----TITYTTMISGLAKAGNITEANGLFERFKENGGV-P-DSACYNA 826 (895)
Q Consensus 753 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p-~~~~~~~ 826 (895)
++..++..+.+.|++++|.+.++.+.+. .|+ ...+..++.++...|++++|...++++...... | ....+..
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKK--YPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 3444555555666666666666666543 122 234455566666666666666666666552111 1 1345556
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC
Q 002666 827 MMEGLSNANRAMDAYTLFEETRRK 850 (895)
Q Consensus 827 l~~~~~~~g~~~~A~~~~~~~~~~ 850 (895)
++.++.+.|++++|...++++++.
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHH
Confidence 666666666666666666666665
No 156
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.94 E-value=0.00026 Score=60.90 Aligned_cols=22 Identities=23% Similarity=0.308 Sum_probs=9.0
Q ss_pred HHHHHHccCCHHHHHHHHHHHH
Q 002666 338 MIMGYGSVGKFDEAFSLFERLK 359 (895)
Q Consensus 338 l~~~~~~~g~~~~A~~~~~~~~ 359 (895)
++..+.+.|+++.|...|+.+.
T Consensus 45 l~~~~~~~~~~~~A~~~~~~~~ 66 (119)
T TIGR02795 45 LGEAYYAQGKYADAAKAFLAVV 66 (119)
T ss_pred HHHHHHhhccHHHHHHHHHHHH
Confidence 3334444444444444444433
No 157
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.92 E-value=0.0019 Score=62.89 Aligned_cols=177 Identities=16% Similarity=0.155 Sum_probs=104.7
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH-
Q 002666 687 LIDGFGKVGRIDEAYLIMEELMQKGLTPNAYT---WNCLLDALVKAEEISEAFVCFQSMKDLKCTPNHVTYSIIINGLC- 762 (895)
Q Consensus 687 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~- 762 (895)
.+..+...|++++|++.|+.+...... +... ...++.+|.+.+++++|...+++.++.........|.....+.+
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~-s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~ 116 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPF-GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTN 116 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhh
Confidence 344455567777777777777763222 2222 23456677777777777777777776432211222222222221
Q ss_pred -hc---------------CC---HhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 002666 763 -RV---------------RK---FNKAFVFWQEMQKQGFKPNTITYTTMISGLAKAGNITEANGLFERFKENGGVPDSAC 823 (895)
Q Consensus 763 -~~---------------g~---~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 823 (895)
.. .+ ..+|+..|+++++. -|+. .-..+|...+..+... =...
T Consensus 117 ~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--yP~S-------------~ya~~A~~rl~~l~~~----la~~ 177 (243)
T PRK10866 117 MALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--YPNS-------------QYTTDATKRLVFLKDR----LAKY 177 (243)
T ss_pred hhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--CcCC-------------hhHHHHHHHHHHHHHH----HHHH
Confidence 11 11 23455666666653 3332 2233444333333220 0112
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002666 824 YNAMMEGLSNANRAMDAYTLFEETRRK--GFNIHTKTCVILLDALHKAECLEQAAIVGAVLR 883 (895)
Q Consensus 824 ~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~l~ 883 (895)
-...++.|.+.|++..|+.-++.+++. +.+....+...+..+|...|..++|..+.+.+.
T Consensus 178 e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 178 ELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 235677899999999999999999987 334456778899999999999999998776653
No 158
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.91 E-value=0.03 Score=55.52 Aligned_cols=248 Identities=15% Similarity=0.092 Sum_probs=102.6
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHh--HHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCCHHHHH
Q 002666 589 AGFAHETDQLFYAMKKQGCVLDTRA--YNTVVDGFCKSGKVNKAYQLLEEMKTKGHYPTVVTYGSVIDGLAKIDRLDEAY 666 (895)
Q Consensus 589 ~g~~~~A~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~ 666 (895)
.|+++.|.+-|+.|... |.... ...|.-.-.+.|..+.|..+-+.....-.. -.-.+...+...+..|+++.|+
T Consensus 133 eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~Al 208 (531)
T COG3898 133 EGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGAL 208 (531)
T ss_pred cCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHH
Confidence 45555555555555531 11111 111111222345555555555555443211 2223444455555555555555
Q ss_pred HHHHHHHHcC-CCcCHHHH--HHHHHHH---HccCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHH
Q 002666 667 MLFEEAKSKG-IELNTVIY--SSLIDGF---GKVGRIDEAYLIMEELMQKGLTPNAY-TWNCLLDALVKAEEISEAFVCF 739 (895)
Q Consensus 667 ~~~~~~~~~~-~~~~~~~~--~~l~~~~---~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~ 739 (895)
++.+...... +.++..-- ..|+.+- .-..+...|...-.+..+ +.||.+ .-..-..++.+.|++.++-.++
T Consensus 209 kLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~il 286 (531)
T COG3898 209 KLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKIL 286 (531)
T ss_pred HHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHH
Confidence 5555544321 22222111 1111111 111234444444444433 333321 1112234455555555555555
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 002666 740 QSMKDLKCTPNHVTYSIIINGLCRVRKFNKAFVFWQEMQKQ-GFKPN-TITYTTMISGLAKAGNITEANGLFERFKENGG 817 (895)
Q Consensus 740 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 817 (895)
+.+-+....|+. +. .|.+...-+.++.-+++.... .++|| ......+..+....|++..|..-.+.+.. .
T Consensus 287 E~aWK~ePHP~i--a~----lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~ 358 (531)
T COG3898 287 ETAWKAEPHPDI--AL----LYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--E 358 (531)
T ss_pred HHHHhcCCChHH--HH----HHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--h
Confidence 555553322322 11 122222222233223322211 13333 23444444445555555555555555544 4
Q ss_pred CCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHC
Q 002666 818 VPDSACYNAMMEGLSN-ANRAMDAYTLFEETRRK 850 (895)
Q Consensus 818 ~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~ 850 (895)
.|....|..|++.--. .|+-.+++.++-+..+.
T Consensus 359 ~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 359 APRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 4555555555554433 25555555555555444
No 159
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.91 E-value=0.032 Score=59.41 Aligned_cols=23 Identities=17% Similarity=0.235 Sum_probs=11.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHH
Q 002666 369 AYNSLLTCLGKKGRVTEAMKIFE 391 (895)
Q Consensus 369 ~~~~l~~~~~~~g~~~~A~~~~~ 391 (895)
+++.+...+.....+++|.+.|.
T Consensus 798 A~r~ig~~fa~~~~We~A~~yY~ 820 (1189)
T KOG2041|consen 798 AFRNIGETFAEMMEWEEAAKYYS 820 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555544
No 160
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.88 E-value=0.0003 Score=61.00 Aligned_cols=91 Identities=18% Similarity=0.072 Sum_probs=45.0
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 002666 338 MIMGYGSVGKFDEAFSLFERLKQKGCIPSVIAYNSLLTCLGKKGRVTEAMKIFEAMKKDARPNNTTYNVLIDMLCKAGNF 417 (895)
Q Consensus 338 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 417 (895)
+...+...|++++|.++|+.+...++. +...|..|..++...|++++|+..|.......|.++..+..++.++...|+.
T Consensus 41 ~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~ 119 (157)
T PRK15363 41 YAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNV 119 (157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCH
Confidence 333344445555555555544444321 3444444555555555555555555555444455555555555555555555
Q ss_pred HHHHHHHHHHHH
Q 002666 418 EDALKFRDAMKE 429 (895)
Q Consensus 418 ~~A~~~~~~~~~ 429 (895)
+.|.+.|+..+.
T Consensus 120 ~~A~~aF~~Ai~ 131 (157)
T PRK15363 120 CYAIKALKAVVR 131 (157)
T ss_pred HHHHHHHHHHHH
Confidence 555555554443
No 161
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.84 E-value=0.00017 Score=59.12 Aligned_cols=91 Identities=15% Similarity=0.204 Sum_probs=44.1
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhc
Q 002666 756 IIINGLCRVRKFNKAFVFWQEMQKQGFKPNTITYTTMISGLAKAGNITEANGLFERFKENGGVP-DSACYNAMMEGLSNA 834 (895)
Q Consensus 756 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~ 834 (895)
.++..+...|++++|...++++.+. .+.+...+..++.++...|++++|.+.+++..+ ..| +..++..++..+...
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALEL-DPDNADAYYNLAAAYYKLGKYEEALEDYEKALE--LDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhc-CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCcchhHHHHHHHHHHHH
Confidence 3444455555555555555555442 112224444445555555555555555555544 222 334444555555555
Q ss_pred CCHHHHHHHHHHHHH
Q 002666 835 NRAMDAYTLFEETRR 849 (895)
Q Consensus 835 g~~~~A~~~~~~~~~ 849 (895)
|++++|...+++...
T Consensus 82 ~~~~~a~~~~~~~~~ 96 (100)
T cd00189 82 GKYEEALEAYEKALE 96 (100)
T ss_pred HhHHHHHHHHHHHHc
Confidence 555555555554443
No 162
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.82 E-value=0.0005 Score=71.57 Aligned_cols=86 Identities=17% Similarity=0.064 Sum_probs=38.9
Q ss_pred HhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHH
Q 002666 762 CRVRKFNKAFVFWQEMQKQGFKPNTITYTTMISGLAKAGNITEANGLFERFKENGGVP-DSACYNAMMEGLSNANRAMDA 840 (895)
Q Consensus 762 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A 840 (895)
...|++++|++.|+++++.. +.+...|..+..+|...|++++|+..++++++ +.| +...|..++.+|...|++++|
T Consensus 13 ~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~--l~P~~~~a~~~lg~~~~~lg~~~eA 89 (356)
T PLN03088 13 FVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIE--LDPSLAKAYLRKGTACMKLEEYQTA 89 (356)
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHhCCHHHH
Confidence 34444444444444444421 11233444444444444455555444444444 333 344444444444444555555
Q ss_pred HHHHHHHHHC
Q 002666 841 YTLFEETRRK 850 (895)
Q Consensus 841 ~~~~~~~~~~ 850 (895)
+..|+++++.
T Consensus 90 ~~~~~~al~l 99 (356)
T PLN03088 90 KAALEKGASL 99 (356)
T ss_pred HHHHHHHHHh
Confidence 5554444444
No 163
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.80 E-value=0.046 Score=54.25 Aligned_cols=296 Identities=15% Similarity=0.135 Sum_probs=139.8
Q ss_pred HHHHHHHHHh--cCCHHHHHHHHHHHHHcCCCCCHhhHHHHHH--HHHHcCChhHHHHHHHHHHHCCCCCCHHH--HHHH
Q 002666 509 YTSLIRNFFK--HGRKEDGHKIYKEMVQRGCSPDLMLLNTYMD--CVFKAGETEKGRALFEEIKAQGFVPDVQS--YSIL 582 (895)
Q Consensus 509 ~~~l~~~~~~--~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l 582 (895)
|..|-.+++. .|+-..|.+.-.+..+. +..|..-+..++. .-.-.|+++.|.+-|+.|... |.... ...|
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgL 160 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGL 160 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHH
Confidence 5555444443 34455555544443321 2333333333332 233456777777777766652 22221 1122
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCC-CCCCHHhH--HHHHHHH--H
Q 002666 583 IHGLVKAGFAHETDQLFYAMKKQGCVLDTRAYNTVVDGFCKSGKVNKAYQLLEEMKTKG-HYPTVVTY--GSVIDGL--A 657 (895)
Q Consensus 583 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~--~~l~~~~--~ 657 (895)
.-.-.+.|..+.|..+-+..-... +.-...+...+...|..|+++.|+++++.-.... +.++..-- ..|+.+- .
T Consensus 161 yleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s 239 (531)
T COG3898 161 YLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMS 239 (531)
T ss_pred HHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHH
Confidence 222234566666666665555442 2234555666666666777777777666544331 12222211 1122111 1
Q ss_pred -ccCCHHHHHHHHHHHHHcCCCcCHH-HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 002666 658 -KIDRLDEAYMLFEEAKSKGIELNTV-IYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNAYTWNCLLDALVKAEEISEA 735 (895)
Q Consensus 658 -~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 735 (895)
-..+...|...-.+..+. .|+.. .-.....++.+.|+..++-.+++.+-+....|+. + ++..+.+.|+ .+
T Consensus 240 ~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~i--a--~lY~~ar~gd--ta 311 (531)
T COG3898 240 LLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDI--A--LLYVRARSGD--TA 311 (531)
T ss_pred HhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHH--H--HHHHHhcCCC--cH
Confidence 112344444444444443 23322 1122345566667777777777666664433332 2 2223344444 23
Q ss_pred HHHHHHHHhc-CCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCCHHHHHHHHHHH
Q 002666 736 FVCFQSMKDL-KCTPN-HVTYSIIINGLCRVRKFNKAFVFWQEMQKQGFKPNTITYTTMISGL-AKAGNITEANGLFERF 812 (895)
Q Consensus 736 ~~~~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~~~~A~~~~~~~ 812 (895)
+.-+++.... .++|| ..+...+..+-...|++..|..--+.... ..|....|..|.+.- ...|+-.++...+-+.
T Consensus 312 ~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqa 389 (531)
T COG3898 312 LDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQA 389 (531)
T ss_pred HHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHH
Confidence 3333332221 12333 34444555556666666666655555543 456666666665553 3336666666666666
Q ss_pred HHCCCCC
Q 002666 813 KENGGVP 819 (895)
Q Consensus 813 ~~~~~~p 819 (895)
+.....|
T Consensus 390 v~APrdP 396 (531)
T COG3898 390 VKAPRDP 396 (531)
T ss_pred hcCCCCC
Confidence 6544444
No 164
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.80 E-value=0.0003 Score=66.98 Aligned_cols=93 Identities=20% Similarity=0.203 Sum_probs=41.5
Q ss_pred HHhcCCHhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 002666 307 LCKSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLFERLKQKGCIPSVIAYNSLLTCLGKKGRVTEA 386 (895)
Q Consensus 307 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 386 (895)
+.+.++|.+|+..|.+.++..+. |.+.|-.-..+|++.|.++.|++-.+..+..+.. ...+|..|..+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHHHH
Confidence 33444444444444444444443 4444444444444444444444444444443211 233444444444444444444
Q ss_pred HHHHHHHhcCCCCCH
Q 002666 387 MKIFEAMKKDARPNN 401 (895)
Q Consensus 387 ~~~~~~~~~~~~~~~ 401 (895)
++.|++.....|.+.
T Consensus 169 ~~aykKaLeldP~Ne 183 (304)
T KOG0553|consen 169 IEAYKKALELDPDNE 183 (304)
T ss_pred HHHHHhhhccCCCcH
Confidence 444444444444444
No 165
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.80 E-value=4.2e-05 Score=60.55 Aligned_cols=47 Identities=21% Similarity=0.365 Sum_probs=17.7
Q ss_pred CCHhHHHHHHHHHhhCCCC-CCHHhHHHHHHHHHccCCHHHHHHHHHH
Q 002666 311 KRLEEAVAMFEQMDRNREV-PCAYAYNTMIMGYGSVGKFDEAFSLFER 357 (895)
Q Consensus 311 g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 357 (895)
|+++.|+.+++++....+. ++...+..++.+|.+.|++++|..++++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3444444444444433321 1222222334444444444444444433
No 166
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.79 E-value=0.00054 Score=71.31 Aligned_cols=99 Identities=16% Similarity=0.008 Sum_probs=50.3
Q ss_pred HHHhcCCHhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 002666 306 VLCKSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLFERLKQKGCIPSVIAYNSLLTCLGKKGRVTE 385 (895)
Q Consensus 306 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 385 (895)
.+...|++++|+++|++++...+. +...|..++.+|...|++++|+..++++++... .+...|..++.+|...|++++
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P-~~~~a~~~lg~~~~~lg~~~e 88 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELDP-SLAKAYLRKGTACMKLEEYQT 88 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHhCCHHH
Confidence 344555555555555555554443 444555555555555555555555555555432 134445555555555555555
Q ss_pred HHHHHHHHhcCCCCCHHHHHH
Q 002666 386 AMKIFEAMKKDARPNNTTYNV 406 (895)
Q Consensus 386 A~~~~~~~~~~~~~~~~~~~~ 406 (895)
|+..|+...+..|.+......
T Consensus 89 A~~~~~~al~l~P~~~~~~~~ 109 (356)
T PLN03088 89 AKAALEKGASLAPGDSRFTKL 109 (356)
T ss_pred HHHHHHHHHHhCCCCHHHHHH
Confidence 555555555544444444333
No 167
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.76 E-value=0.00039 Score=56.90 Aligned_cols=16 Identities=31% Similarity=0.399 Sum_probs=5.8
Q ss_pred HHHHhcCCHHHHHHHH
Q 002666 409 DMLCKAGNFEDALKFR 424 (895)
Q Consensus 409 ~~~~~~g~~~~A~~~~ 424 (895)
.++...|++++|...+
T Consensus 76 ~~~~~~~~~~~a~~~~ 91 (100)
T cd00189 76 LAYYKLGKYEEALEAY 91 (100)
T ss_pred HHHHHHHhHHHHHHHH
Confidence 3333333333333333
No 168
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.76 E-value=0.00054 Score=63.06 Aligned_cols=93 Identities=16% Similarity=0.120 Sum_probs=47.7
Q ss_pred HhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 002666 333 YAYNTMIMGYGSVGKFDEAFSLFERLKQKGCIP--SVIAYNSLLTCLGKKGRVTEAMKIFEAMKKDARPNNTTYNVLIDM 410 (895)
Q Consensus 333 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 410 (895)
..|..++..+...|++++|...|++.......+ ...++..+..++...|++++|+..+++.....|....++..++.+
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i 115 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVI 115 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHH
Confidence 344455555555555555555555555432211 123455555555566666666666655555445555555555555
Q ss_pred HH-------hcCCHHHHHHHHH
Q 002666 411 LC-------KAGNFEDALKFRD 425 (895)
Q Consensus 411 ~~-------~~g~~~~A~~~~~ 425 (895)
+. ..|++++|...++
T Consensus 116 ~~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 116 CHYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred HHHhhHHHHHcccHHHHHHHHH
Confidence 54 5555554444333
No 169
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.75 E-value=0.0066 Score=59.16 Aligned_cols=181 Identities=13% Similarity=0.036 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHh---HHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHH
Q 002666 227 VHLFTTLIRVFAREGRVDDALFLLDEMKNNAFSVDIVL---YNVCIDCFGKVGKVDMAWKFFHEMKAQGVAPDDVTYTSM 303 (895)
Q Consensus 227 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l 303 (895)
.......+..+...|++++|.+.|+++....+.. ... .-.++.++.+.+++++|...++++++..+......|...
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y 110 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY 110 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence 3334444555556666666666666666543211 111 134555666667777777777666665322222222222
Q ss_pred HHHHHh--cC---------------C---HhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhcCC
Q 002666 304 IGVLCK--SK---------------R---LEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLFERLKQKGC 363 (895)
Q Consensus 304 ~~~~~~--~g---------------~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 363 (895)
..+.+. .+ + ..+|+..|+++++.-|. ..-..+|...+..+...
T Consensus 111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~---------------S~ya~~A~~rl~~l~~~-- 173 (243)
T PRK10866 111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPN---------------SQYTTDATKRLVFLKDR-- 173 (243)
T ss_pred HHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcC---------------ChhHHHHHHHHHHHHHH--
Confidence 222221 11 1 12344444444444332 12233333333333221
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 002666 364 IPSVIAYNSLLTCLGKKGRVTEAMKIFEAMKKDARP---NNTTYNVLIDMLCKAGNFEDALKFRDAM 427 (895)
Q Consensus 364 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 427 (895)
=..--..++..|.+.|.+..|+.-++.+.+..|. ...+...++.+|...|..++|..+...+
T Consensus 174 --la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 174 --LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred --HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 0111124556677777777777777777664433 4445666667777777777776665544
No 170
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.75 E-value=0.0013 Score=60.76 Aligned_cols=87 Identities=21% Similarity=0.221 Sum_probs=44.0
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCC--HHhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 002666 299 TYTSMIGVLCKSKRLEEAVAMFEQMDRNREVPC--AYAYNTMIMGYGSVGKFDEAFSLFERLKQKGCIPSVIAYNSLLTC 376 (895)
Q Consensus 299 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 376 (895)
.+..++..+...|++++|...|++.+...+.+. ...+..++..+.+.|++++|...+.++.+... .+...+..++.+
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~ 115 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNP-KQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHH
Confidence 445555555566666666666666554433221 24455555555555555555555555555421 133344444444
Q ss_pred HHhcCCHHHH
Q 002666 377 LGKKGRVTEA 386 (895)
Q Consensus 377 ~~~~g~~~~A 386 (895)
+...|+...+
T Consensus 116 ~~~~g~~~~a 125 (172)
T PRK02603 116 YHKRGEKAEE 125 (172)
T ss_pred HHHcCChHhH
Confidence 5444444333
No 171
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.74 E-value=0.0015 Score=60.28 Aligned_cols=88 Identities=15% Similarity=0.070 Sum_probs=47.5
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCCHHhHHHHHHH
Q 002666 264 LYNVCIDCFGKVGKVDMAWKFFHEMKAQGVAPD--DVTYTSMIGVLCKSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMG 341 (895)
Q Consensus 264 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 341 (895)
.+..++..+...|++++|...|++..+.+..+. ...+..++..+.+.|++++|+..+++.+...+. +...+..++..
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~ 115 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHH
Confidence 344455555555555555555555554322221 235555666666666666666666666655443 45555555566
Q ss_pred HHccCCHHHHH
Q 002666 342 YGSVGKFDEAF 352 (895)
Q Consensus 342 ~~~~g~~~~A~ 352 (895)
|...|+...+.
T Consensus 116 ~~~~g~~~~a~ 126 (172)
T PRK02603 116 YHKRGEKAEEA 126 (172)
T ss_pred HHHcCChHhHh
Confidence 65555544433
No 172
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.72 E-value=0.00063 Score=62.63 Aligned_cols=91 Identities=15% Similarity=0.053 Sum_probs=50.3
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 002666 753 TYSIIINGLCRVRKFNKAFVFWQEMQKQGFKP--NTITYTTMISGLAKAGNITEANGLFERFKENGGVP-DSACYNAMME 829 (895)
Q Consensus 753 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~ 829 (895)
.|..++..+...|++++|+..+++.......| ...+|..+..++...|++++|+..++++++ +.| ....+..++.
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~--~~~~~~~~~~~la~ 114 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE--RNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCcHHHHHHHHH
Confidence 34455555556666666666666665431111 123566666666666666666666666665 344 3444555555
Q ss_pred HHH-------hcCCHHHHHHHHH
Q 002666 830 GLS-------NANRAMDAYTLFE 845 (895)
Q Consensus 830 ~~~-------~~g~~~~A~~~~~ 845 (895)
.+. ..|++++|...++
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHH
Confidence 555 5666664444444
No 173
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.70 E-value=0.006 Score=61.51 Aligned_cols=125 Identities=13% Similarity=0.221 Sum_probs=68.3
Q ss_pred HHHHHHhc-CCHHHHHHHHHHHHhc----CCCCC--HHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-----CH-HH
Q 002666 722 LLDALVKA-EEISEAFVCFQSMKDL----KCTPN--HVTYSIIINGLCRVRKFNKAFVFWQEMQKQGFKP-----NT-IT 788 (895)
Q Consensus 722 l~~~~~~~-g~~~~A~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-----~~-~~ 788 (895)
++..|... |++++|++.|++..+. + .+. ...+..++..+.+.|+|++|+++|++........ +. ..
T Consensus 120 lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~ 198 (282)
T PF14938_consen 120 LAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEY 198 (282)
T ss_dssp HHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHH
Confidence 34455555 6777777777776642 1 111 1334566677888888888888888877642211 11 12
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCC--HHHHHHHHHHHHh--cCCHHHHHHHHHHH
Q 002666 789 YTTMISGLAKAGNITEANGLFERFKEN--GGVPD--SACYNAMMEGLSN--ANRAMDAYTLFEET 847 (895)
Q Consensus 789 ~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~--~~~~~~l~~~~~~--~g~~~~A~~~~~~~ 847 (895)
+...+-++...||...|.+.+++.... ++..+ ......|+.++-. ...+.+|+.-|+.+
T Consensus 199 ~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~ 263 (282)
T PF14938_consen 199 FLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSI 263 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHccc
Confidence 333444566778888888888887652 12112 2334455555533 23455566655554
No 174
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.67 E-value=7e-05 Score=47.43 Aligned_cols=33 Identities=42% Similarity=0.748 Sum_probs=23.3
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCC
Q 002666 264 LYNVCIDCFGKVGKVDMAWKFFHEMKAQGVAPD 296 (895)
Q Consensus 264 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 296 (895)
+||.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 566777777777777777777777777776665
No 175
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.67 E-value=0.0012 Score=55.34 Aligned_cols=91 Identities=19% Similarity=0.189 Sum_probs=51.5
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC----CHHHHHHHHHH
Q 002666 757 IINGLCRVRKFNKAFVFWQEMQKQGFKPN--TITYTTMISGLAKAGNITEANGLFERFKENGGVP----DSACYNAMMEG 830 (895)
Q Consensus 757 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p----~~~~~~~l~~~ 830 (895)
+.+++-..|+.++|+.+|++..+.|...+ ...+..+...+...|++++|+.++++.... .| +......++.+
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~--~p~~~~~~~l~~f~Al~ 84 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE--FPDDELNAALRVFLALA 84 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHHHHHHHHH
Confidence 44555566666666666666666554433 234555555666666666666666666553 12 22333344455
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 002666 831 LSNANRAMDAYTLFEETRR 849 (895)
Q Consensus 831 ~~~~g~~~~A~~~~~~~~~ 849 (895)
+...|+.++|+.++-..+.
T Consensus 85 L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 85 LYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 6666666666666655544
No 176
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.66 E-value=0.088 Score=53.32 Aligned_cols=80 Identities=9% Similarity=0.179 Sum_probs=53.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 002666 365 PSVIAYNSLLTCLGKKGRVTEAMKIFEAMKKDARPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEAGLFPNVMTVNIMVD 444 (895)
Q Consensus 365 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 444 (895)
.|...|..|+.-+...|..++..++++++....|--+.+|...+.+-....++.....+|.+.+...+ +...|...+.
T Consensus 40 tnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l--~ldLW~lYl~ 117 (660)
T COG5107 40 TNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSL--NLDLWMLYLE 117 (660)
T ss_pred hhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhc--cHhHHHHHHH
Confidence 35667777777777777777777777777777777777777777766667777777777777766533 3444544444
Q ss_pred HH
Q 002666 445 RL 446 (895)
Q Consensus 445 ~~ 446 (895)
-.
T Consensus 118 YI 119 (660)
T COG5107 118 YI 119 (660)
T ss_pred HH
Confidence 33
No 177
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.65 E-value=0.0012 Score=63.51 Aligned_cols=116 Identities=6% Similarity=0.022 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHH
Q 002666 732 ISEAFVCFQSMKDLKCTPNHVTYSIIINGLCRVRKFNKAFVFWQEMQKQGFKPNTITYTTMISGLAKAG---NITEANGL 808 (895)
Q Consensus 732 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~ 808 (895)
++....-++.-+..+ +.|...|..|..+|...|+++.|..-|.+..+. ..+++..+..+..++..+. ...++..+
T Consensus 138 ~~~l~a~Le~~L~~n-P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL-~g~n~~~~~g~aeaL~~~a~~~~ta~a~~l 215 (287)
T COG4235 138 MEALIARLETHLQQN-PGDAEGWDLLGRAYMALGRASDALLAYRNALRL-AGDNPEILLGLAEALYYQAGQQMTAKARAL 215 (287)
T ss_pred HHHHHHHHHHHHHhC-CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 444444444444433 456778888888888888888888888888774 2345666777776644332 56678888
Q ss_pred HHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 002666 809 FERFKENGGVP-DSACYNAMMEGLSNANRAMDAYTLFEETRRKG 851 (895)
Q Consensus 809 ~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 851 (895)
+++++. ..| |......|+..++..|++.+|...++.|++..
T Consensus 216 l~~al~--~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 216 LRQALA--LDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHh--cCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 888887 556 67777888888888888888888888888885
No 178
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.61 E-value=0.003 Score=53.05 Aligned_cols=92 Identities=23% Similarity=0.244 Sum_probs=55.7
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC---CHHHHHHHHHHHH
Q 002666 338 MIMGYGSVGKFDEAFSLFERLKQKGCIPS--VIAYNSLLTCLGKKGRVTEAMKIFEAMKKDARP---NNTTYNVLIDMLC 412 (895)
Q Consensus 338 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~ 412 (895)
+..++-..|+.++|+.+|++....|.... ...+..+...+...|++++|..++++.....|. +......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 44455566666666666666666654432 334555666666677777777777666655444 4444445555666
Q ss_pred hcCCHHHHHHHHHHHHH
Q 002666 413 KAGNFEDALKFRDAMKE 429 (895)
Q Consensus 413 ~~g~~~~A~~~~~~~~~ 429 (895)
..|+.++|++.+-....
T Consensus 87 ~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 87 NLGRPKEALEWLLEALA 103 (120)
T ss_pred HCCCHHHHHHHHHHHHH
Confidence 77777777776655443
No 179
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.60 E-value=0.0096 Score=56.52 Aligned_cols=171 Identities=14% Similarity=0.093 Sum_probs=94.7
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHH--HHHHHHH
Q 002666 687 LIDGFGKVGRIDEAYLIMEELMQKGLT-P-NAYTWNCLLDALVKAEEISEAFVCFQSMKDLKCTPNHVTYS--IIINGLC 762 (895)
Q Consensus 687 l~~~~~~~g~~~~A~~~~~~~~~~~~~-p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~--~l~~~~~ 762 (895)
.+..+...|++.+|+..|+.+...... | -......++.++.+.|+++.|...+++.++.-.......+. .++.++.
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~ 90 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYY 90 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHH
Confidence 344555667777777777777763211 1 23444556777777777777777777777633111111122 2222211
Q ss_pred hc-----------CCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 002666 763 RV-----------RKFNKAFVFWQEMQKQGFKPNTITYTTMISGLAKAGNITEANGLFERFKENGGVPDSACYNAMMEGL 831 (895)
Q Consensus 763 ~~-----------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 831 (895)
.. +...+|+..|+.++ .-|=...-..+|...+..+.+. =...-..+++.|
T Consensus 91 ~~~~~~~~~~~D~~~~~~A~~~~~~li---------------~~yP~S~y~~~A~~~l~~l~~~----la~~e~~ia~~Y 151 (203)
T PF13525_consen 91 KQIPGILRSDRDQTSTRKAIEEFEELI---------------KRYPNSEYAEEAKKRLAELRNR----LAEHELYIARFY 151 (203)
T ss_dssp HHHHHHH-TT---HHHHHHHHHHHHHH---------------HH-TTSTTHHHHHHHHHHHHHH----HHHHHHHHHHHH
T ss_pred HhCccchhcccChHHHHHHHHHHHHHH---------------HHCcCchHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 11 12233444444444 3333444455555544444331 012233467889
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCC---HhhHHHHHHHHHhcCCHHHHHH
Q 002666 832 SNANRAMDAYTLFEETRRKGFNIH---TKTCVILLDALHKAECLEQAAI 877 (895)
Q Consensus 832 ~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~ 877 (895)
.+.|++..|+..++.+++. +|.. ..+...++.+|.+.|..+.|..
T Consensus 152 ~~~~~y~aA~~r~~~v~~~-yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 152 YKRGKYKAAIIRFQYVIEN-YPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp HCTT-HHHHHHHHHHHHHH-STTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHcccHHHHHHHHHHHHHH-CCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 9999999999999999988 3433 4566789999999999996654
No 180
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.58 E-value=0.00012 Score=46.00 Aligned_cols=33 Identities=42% Similarity=0.665 Sum_probs=22.4
Q ss_pred HhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCC
Q 002666 263 VLYNVCIDCFGKVGKVDMAWKFFHEMKAQGVAP 295 (895)
Q Consensus 263 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 295 (895)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 456667777777777777777777776666665
No 181
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.58 E-value=0.0035 Score=60.44 Aligned_cols=121 Identities=11% Similarity=0.075 Sum_probs=92.1
Q ss_pred HHHHhhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHhcC
Q 002666 320 FEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLFERLKQKGCIPSVIAYNSLLTCLGKKG---RVTEAMKIFEAMKKD 396 (895)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~ 396 (895)
++.-+..+|. |...|-.|+..|...|+++.|...|....+.. .++...+..+..++.... ...++.++|+++.+.
T Consensus 145 Le~~L~~nP~-d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~ 222 (287)
T COG4235 145 LETHLQQNPG-DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALAL 222 (287)
T ss_pred HHHHHHhCCC-CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc
Confidence 4444555665 88888888888888888888888888888864 346667777777665432 456888899999988
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 002666 397 ARPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEAGLFPNVMTVNIMVD 444 (895)
Q Consensus 397 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 444 (895)
.|.|+.+...|...+...|++.+|...++.|++.. |....+..++.
T Consensus 223 D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l--p~~~~rr~~ie 268 (287)
T COG4235 223 DPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL--PADDPRRSLIE 268 (287)
T ss_pred CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--CCCCchHHHHH
Confidence 89999999999999999999999999999998864 33334444443
No 182
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.58 E-value=0.0041 Score=67.72 Aligned_cols=61 Identities=11% Similarity=0.067 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002666 752 VTYSIIINGLCRVRKFNKAFVFWQEMQKQGFKPNTITYTTMISGLAKAGNITEANGLFERFKE 814 (895)
Q Consensus 752 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 814 (895)
..|..+.-.....|++++|...++++.+ +.|+...|..++..+...|+.++|.+.++++..
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~--L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAID--LEMSWLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4444444444445555555555555555 234555555555555555555555555555555
No 183
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.56 E-value=0.039 Score=51.56 Aligned_cols=130 Identities=14% Similarity=0.073 Sum_probs=57.2
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHH-----HHH
Q 002666 231 TTLIRVFAREGRVDDALFLLDEMKNNAFSVDIVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGVAPDDVTYTS-----MIG 305 (895)
Q Consensus 231 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~-----l~~ 305 (895)
+.++..+...|.+.-...++.++.+...+.++..-..+++.-.+.|+.+.|..+|++..+..-..|..+.+. ...
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~ 260 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF 260 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence 344444444455555555555555444344444444555555555555555555554433211112222221 122
Q ss_pred HHHhcCCHhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 002666 306 VLCKSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLFERLKQK 361 (895)
Q Consensus 306 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 361 (895)
.|.-.+++..|...|+++...++. +...-|.-..+..-.|+...|.+.++.|++.
T Consensus 261 i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 261 LHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred heecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 333344455555555544444433 4444444343444444555555555554443
No 184
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.55 E-value=0.0055 Score=61.82 Aligned_cols=22 Identities=0% Similarity=0.123 Sum_probs=13.1
Q ss_pred HHHHHhcCChhHHHHHHHHHHH
Q 002666 199 IGALATVRESNLMLNLFHQMQE 220 (895)
Q Consensus 199 ~~~~~~~~~~~~a~~~~~~~~~ 220 (895)
...|...|++++|.+.|.+..+
T Consensus 42 a~~fk~~~~~~~A~~ay~kAa~ 63 (282)
T PF14938_consen 42 ANCFKLAKDWEKAAEAYEKAAD 63 (282)
T ss_dssp HHHHHHTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHhccchhHHHHHHHHH
Confidence 3456666777777777666543
No 185
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.54 E-value=0.031 Score=52.78 Aligned_cols=179 Identities=17% Similarity=0.178 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 002666 682 VIYSSLIDGFGKVGRIDEAYLIMEELMQKG-LTP-NAYTWNCLLDALVKAEEISEAFVCFQSMKDLKCTPNHVTYSIIIN 759 (895)
Q Consensus 682 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 759 (895)
..|+.-+ .-.+.|++++|.+.|+.+.... ..| ...+...++.++.+.++++.|+..+++.+..........|...+.
T Consensus 36 ~LY~~g~-~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Ylk 114 (254)
T COG4105 36 ELYNEGL-TELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLK 114 (254)
T ss_pred HHHHHHH-HHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHH
Confidence 3444333 3345577888888887777632 112 345555677777778888888888887776432222223333333
Q ss_pred HHHhc-------CC---HhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 002666 760 GLCRV-------RK---FNKAFVFWQEMQKQGFKPNTITYTTMISGLAKAGNITEANGLFERFKENGGVPDSACYNAMME 829 (895)
Q Consensus 760 ~~~~~-------g~---~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 829 (895)
+++.- .+ ..+|+.-|++.++. ++.+..+ ..|......+... =...=...++
T Consensus 115 gLs~~~~i~~~~rDq~~~~~A~~~f~~~i~r-yPnS~Ya--------------~dA~~~i~~~~d~----LA~~Em~Iar 175 (254)
T COG4105 115 GLSYFFQIDDVTRDQSAARAAFAAFKELVQR-YPNSRYA--------------PDAKARIVKLNDA----LAGHEMAIAR 175 (254)
T ss_pred HHHHhccCCccccCHHHHHHHHHHHHHHHHH-CCCCcch--------------hhHHHHHHHHHHH----HHHHHHHHHH
Confidence 33311 12 23344444444443 2221111 1111111111110 0011123455
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCC---HhhHHHHHHHHHhcCCHHHHHHHHHH
Q 002666 830 GLSNANRAMDAYTLFEETRRKGFNIH---TKTCVILLDALHKAECLEQAAIVGAV 881 (895)
Q Consensus 830 ~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~ 881 (895)
-|.+.|.+..|..-+++|++. ++.. ...+..+..+|.+.|-.++|.+..+.
T Consensus 176 yY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~v 229 (254)
T COG4105 176 YYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKV 229 (254)
T ss_pred HHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHH
Confidence 677777777777777777776 3332 34455677777777777777764443
No 186
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.54 E-value=0.0021 Score=64.48 Aligned_cols=130 Identities=17% Similarity=0.228 Sum_probs=72.9
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCCHHhHHHHHHH-HHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 002666 299 TYTSMIGVLCKSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMG-YGSVGKFDEAFSLFERLKQKGCIPSVIAYNSLLTCL 377 (895)
Q Consensus 299 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 377 (895)
+|..++...-+.+..+.|..+|.++.+.+.. +...|...+.. |...++.+.|.++|+...+. +..+...|...+..+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~-~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRC-TYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS--THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 4555555555556666666666666543221 33344443333 22245555566666666654 334555666666666
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 002666 378 GKKGRVTEAMKIFEAMKKDARPNN---TTYNVLIDMLCKAGNFEDALKFRDAMKEA 430 (895)
Q Consensus 378 ~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 430 (895)
...|+.+.|..+|++.....+++. ..|...+..-.+.|+.+...++.+++.+.
T Consensus 81 ~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 81 IKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 666666666666666665544433 46667777777777777777777666653
No 187
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.54 E-value=0.00029 Score=52.46 Aligned_cols=56 Identities=20% Similarity=0.237 Sum_probs=32.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 002666 793 ISGLAKAGNITEANGLFERFKENGGVP-DSACYNAMMEGLSNANRAMDAYTLFEETRRK 850 (895)
Q Consensus 793 ~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 850 (895)
+..+...|++++|++.|+++++ ..| +...+..++.++...|++++|+.+|+++++.
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALK--QDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHC--CSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4455566666666666666665 334 4556666666666666666666666666554
No 188
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.52 E-value=0.0063 Score=66.30 Aligned_cols=136 Identities=7% Similarity=-0.040 Sum_probs=90.1
Q ss_pred CCCCHHHHHHHHHHHH--hcC---CHHHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHhc--------CCHhHHHHHHHHH
Q 002666 712 LTPNAYTWNCLLDALV--KAE---EISEAFVCFQSMKDLKCTPNH-VTYSIIINGLCRV--------RKFNKAFVFWQEM 777 (895)
Q Consensus 712 ~~p~~~~~~~l~~~~~--~~g---~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~--------g~~~~A~~~~~~~ 777 (895)
.+.+...|...+.+.. ..+ +...|..+|+++++.. |+. ..|..+..++... .+...+.+...+.
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld--P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE--PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 3345566665555432 222 2556777777777633 443 3344333333222 1223444444443
Q ss_pred HHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 002666 778 QKQ-GFKPNTITYTTMISGLAKAGNITEANGLFERFKENGGVPDSACYNAMMEGLSNANRAMDAYTLFEETRRKG 851 (895)
Q Consensus 778 ~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 851 (895)
... ....+..+|..+.-.+...|++++|...++++++ ..|+...|..++..+...|+.++|...++++...+
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~--L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAID--LEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 332 1334557788887777788999999999999999 66888899999999999999999999999998874
No 189
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.51 E-value=0.0014 Score=64.13 Aligned_cols=97 Identities=14% Similarity=0.140 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCC-CHHHHH
Q 002666 752 VTYSIIINGLCRVRKFNKAFVFWQEMQKQGFKPN----TITYTTMISGLAKAGNITEANGLFERFKEN-GGVP-DSACYN 825 (895)
Q Consensus 752 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p-~~~~~~ 825 (895)
..|......+...|++++|+..|+..++. .|+ ..++..++.+|...|++++|...|+++++. ...| .+..+.
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 44555555556668888888888888774 344 356777777888888888888888888763 1112 356666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC
Q 002666 826 AMMEGLSNANRAMDAYTLFEETRRK 850 (895)
Q Consensus 826 ~l~~~~~~~g~~~~A~~~~~~~~~~ 850 (895)
.++..+...|++++|.+.|+++++.
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 7777787888888888888888776
No 190
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.51 E-value=0.00018 Score=45.53 Aligned_cols=33 Identities=33% Similarity=0.864 Sum_probs=17.6
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC
Q 002666 753 TYSIIINGLCRVRKFNKAFVFWQEMQKQGFKPN 785 (895)
Q Consensus 753 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 785 (895)
+|++++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 355555555555555555555555555555554
No 191
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.50 E-value=0.0035 Score=62.85 Aligned_cols=129 Identities=9% Similarity=0.078 Sum_probs=63.1
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 002666 683 IYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNAYTWNCLLDALVK-AEEISEAFVCFQSMKDLKCTPNHVTYSIIINGL 761 (895)
Q Consensus 683 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 761 (895)
+|..+++...+.+..+.|..+|.++.+.+ ..+..+|...+..-.. .++.+.|..+|+..++. ++.+...|...++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 44555555555555666666666665421 1123333333333222 34444466666665552 234444555555555
Q ss_pred HhcCCHhHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002666 762 CRVRKFNKAFVFWQEMQKQGFKPNT---ITYTTMISGLAKAGNITEANGLFERFKE 814 (895)
Q Consensus 762 ~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 814 (895)
...++.+.|..+|++.... +.++. ..|...+..=.+.|+++...++.+++.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5566666666666666543 22221 3555555555555666666666655555
No 192
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.50 E-value=0.0004 Score=52.50 Aligned_cols=63 Identities=17% Similarity=0.158 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHC
Q 002666 786 TITYTTMISGLAKAGNITEANGLFERFKENGGVP-DSACYNAMMEGLSNAN-RAMDAYTLFEETRRK 850 (895)
Q Consensus 786 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~ 850 (895)
..+|..++..+...|++++|+..|+++++ ..| ++..|..++.++...| ++++|++.+++.++.
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~--~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIE--LDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHH--HSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 45566666666666666666666666666 445 4566666666666666 566666666666553
No 193
>PRK15331 chaperone protein SicA; Provisional
Probab=97.47 E-value=0.0039 Score=54.53 Aligned_cols=89 Identities=11% Similarity=-0.055 Sum_probs=57.5
Q ss_pred HHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 002666 760 GLCRVRKFNKAFVFWQEMQKQGFKPNTITYTTMISGLAKAGNITEANGLFERFKENGGVPDSACYNAMMEGLSNANRAMD 839 (895)
Q Consensus 760 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 839 (895)
-+...|++++|..+|.-+.-.+ .-+..-|..|..++...+++++|+..|..+...+. -|+......+..|...|+.++
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHH
Confidence 3456677777777777666532 22455566666677777777777777776655221 255556667777777777777
Q ss_pred HHHHHHHHHHC
Q 002666 840 AYTLFEETRRK 850 (895)
Q Consensus 840 A~~~~~~~~~~ 850 (895)
|+..|+.++.+
T Consensus 124 A~~~f~~a~~~ 134 (165)
T PRK15331 124 ARQCFELVNER 134 (165)
T ss_pred HHHHHHHHHhC
Confidence 77777777664
No 194
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.45 E-value=0.0017 Score=67.46 Aligned_cols=123 Identities=11% Similarity=0.101 Sum_probs=84.7
Q ss_pred CCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC--CCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHH
Q 002666 222 GYEVSVHLFTTLIRVFAREGRVDDALFLLDEMKNNA--FSVDIVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGVAPDDVT 299 (895)
Q Consensus 222 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~ 299 (895)
+.+.+......++..+....+.+++..++-+..... ...-..|..++++.|.+.|..++++.+++.=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 345555666667777767777777777777776541 222234556788888888888888888888777888888888
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHc
Q 002666 300 YTSMIGVLCKSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGS 344 (895)
Q Consensus 300 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 344 (895)
++.|++.+.+.|++..|.++...|...+...+..++..-+.++.+
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 888888888888888888888777665554455555444444433
No 195
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.44 E-value=0.00033 Score=52.79 Aligned_cols=52 Identities=19% Similarity=0.216 Sum_probs=33.7
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 002666 797 AKAGNITEANGLFERFKENGGVP-DSACYNAMMEGLSNANRAMDAYTLFEETRRK 850 (895)
Q Consensus 797 ~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 850 (895)
...|++++|++.|+++++ ..| +...+..++.+|.+.|++++|..+++++...
T Consensus 2 l~~~~~~~A~~~~~~~l~--~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQ--RNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHH--HTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 355667777777777666 444 5666666777777777777777777766665
No 196
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.44 E-value=0.021 Score=54.20 Aligned_cols=63 Identities=10% Similarity=0.047 Sum_probs=31.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCC--CChHhHHHHHHHHHhcCChhhHHHHHHHHHHC
Q 002666 229 LFTTLIRVFAREGRVDDALFLLDEMKNNAFS--VDIVLYNVCIDCFGKVGKVDMAWKFFHEMKAQ 291 (895)
Q Consensus 229 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 291 (895)
.+...+..+...|++.+|...|+.+....+. --......++.++.+.|++++|...++++++.
T Consensus 7 ~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 7 ALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3444444555666666666666665543211 11223334555566666666666666665554
No 197
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=97.43 E-value=0.24 Score=52.68 Aligned_cols=187 Identities=11% Similarity=0.018 Sum_probs=112.3
Q ss_pred CHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHH
Q 002666 610 DTRAYNTVVDGFCKSGKVNKAYQLLEEMKTKGHYPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNTVIYSSLID 689 (895)
Q Consensus 610 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 689 (895)
+..+|...+....+.|+.+.+.-+++...-- +..-...|-..+.-....|+.+-|..++....+...+..+.+...-..
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence 4567777888888889999998888877632 111223344444444555888888887777766544434443333333
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCCHHHHH---HHHHHHHhcCCCCCHH--HHHHHHH-HHH
Q 002666 690 GFGKVGRIDEAYLIMEELMQKGLTPNAYT-WNCLLDALVKAEEISEAF---VCFQSMKDLKCTPNHV--TYSIIIN-GLC 762 (895)
Q Consensus 690 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~A~---~~~~~~~~~~~~p~~~--~~~~l~~-~~~ 762 (895)
..-..|++..|..+++.+.+.- |+... -..-+....+.|+.+.+. +++.........+... .+.-..+ .+.
T Consensus 375 f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~ 452 (577)
T KOG1258|consen 375 FEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYK 452 (577)
T ss_pred HHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHH
Confidence 3455689999999999988853 54332 222344566778888777 4444433311112111 1111111 133
Q ss_pred hcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 002666 763 RVRKFNKAFVFWQEMQKQGFKPNTITYTTMISGLAKAG 800 (895)
Q Consensus 763 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 800 (895)
-.++.+.|..++.++.+. .+++...|..+++.....+
T Consensus 453 i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 453 IREDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 356788899999988874 5666777888887765554
No 198
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.41 E-value=0.00074 Score=50.24 Aligned_cols=58 Identities=26% Similarity=0.410 Sum_probs=43.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 002666 373 LLTCLGKKGRVTEAMKIFEAMKKDARPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEA 430 (895)
Q Consensus 373 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 430 (895)
++..+.+.|++++|++.|+++.+..|.+..++..++.++...|++++|...|+++.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4556777778888888888877777777778888888888888888888888777664
No 199
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.41 E-value=0.12 Score=48.57 Aligned_cols=142 Identities=15% Similarity=0.073 Sum_probs=97.6
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHH-----HHHHH
Q 002666 299 TYTSMIGVLCKSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLFERLKQKGCIPSVI-----AYNSL 373 (895)
Q Consensus 299 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-----~~~~l 373 (895)
..+.++..+.-.|.|.-....+.++.+.+++.+......|++.-.+.||.+.|..+|+...+..-..+.. +....
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 3455666666777777777777777777766677777777777777788888888887665533222322 23333
Q ss_pred HHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHH
Q 002666 374 LTCLGKKGRVTEAMKIFEAMKKDARPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEAGLFPNVMTVNIM 442 (895)
Q Consensus 374 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 442 (895)
...|.-.+++..|...|.++....+.++.+-|.-+-++.-.|+..+|++.++.|++.. |...+-+++
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~--P~~~l~es~ 325 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQD--PRHYLHESV 325 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccC--CccchhhhH
Confidence 3445566778888888888887777888877777777777788888888888888753 444444433
No 200
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.40 E-value=0.00059 Score=51.56 Aligned_cols=64 Identities=22% Similarity=0.306 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccC-CHHHHHHHHHHHHhc
Q 002666 297 DVTYTSMIGVLCKSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVG-KFDEAFSLFERLKQK 361 (895)
Q Consensus 297 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~ 361 (895)
..+|..++..+...|++++|+..|++.++.++. +..+|..++.+|...| ++++|++.+++.++.
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 445555556666666666666666666555544 5555555666666665 466666666555543
No 201
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.38 E-value=0.0026 Score=66.12 Aligned_cols=122 Identities=16% Similarity=0.101 Sum_probs=93.5
Q ss_pred CcCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc--CCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHhHH
Q 002666 189 RPAFTAYTTLIGALATVRESNLMLNLFHQMQEL--GYEVSVHLFTTLIRVFAREGRVDDALFLLDEMKNNAFSVDIVLYN 266 (895)
Q Consensus 189 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 266 (895)
+.+......+++.+....+.+.+..++.+.... ....-+.+...+++.|...|..++++.++..=...|+-||..++|
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 445555666666666666777777777776654 233345667789999999999999999999888889999999999
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 002666 267 VCIDCFGKVGKVDMAWKFFHEMKAQGVAPDDVTYTSMIGVLCKS 310 (895)
Q Consensus 267 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~ 310 (895)
.+++.+.+.|++..|.++..+|...+...+..|+..-+.++.+-
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99999999999999999998888776666777776666665554
No 202
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=97.37 E-value=0.28 Score=52.20 Aligned_cols=114 Identities=15% Similarity=0.180 Sum_probs=55.6
Q ss_pred hHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHH
Q 002666 314 EEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLFERLKQKGCIPSVIAYNSLLTCLG-KKGRVTEAMKIFEA 392 (895)
Q Consensus 314 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~ 392 (895)
+.+...++.++..-|. --.-|......-.+.|..+.+.++|++.+.. ++.+...|......+. ..|+.+...+.|+.
T Consensus 62 ~~~r~~y~~fL~kyPl-~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~ 139 (577)
T KOG1258|consen 62 DALREVYDIFLSKYPL-CYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYLAFLKNNNGDPETLRDLFER 139 (577)
T ss_pred HHHHHHHHHHHhhCcc-HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 4444444444443321 1223333333344555555555555555542 3334444444433333 34555555555555
Q ss_pred HhcCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002666 393 MKKDAR---PNNTTYNVLIDMLCKAGNFEDALKFRDAMKE 429 (895)
Q Consensus 393 ~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 429 (895)
...... .....|...+..-..++++.....++++.++
T Consensus 140 A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRile 179 (577)
T KOG1258|consen 140 AKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILE 179 (577)
T ss_pred HHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHh
Confidence 544222 2334455566666666666666666666665
No 203
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.36 E-value=0.00037 Score=43.64 Aligned_cols=32 Identities=28% Similarity=0.587 Sum_probs=14.8
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC
Q 002666 753 TYSIIINGLCRVRKFNKAFVFWQEMQKQGFKP 784 (895)
Q Consensus 753 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 784 (895)
+|+.++.+|.+.|+++.|.++++.|.+.|+.|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 34444444444444444444444444444443
No 204
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.33 E-value=0.004 Score=61.03 Aligned_cols=86 Identities=12% Similarity=0.105 Sum_probs=49.1
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcCCHhHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcC
Q 002666 727 VKAEEISEAFVCFQSMKDLKCTPN----HVTYSIIINGLCRVRKFNKAFVFWQEMQKQ--GFKPNTITYTTMISGLAKAG 800 (895)
Q Consensus 727 ~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~g 800 (895)
.+.|++++|+..|+.+++.. |+ ...+..++.+|...|++++|...|+.+.+. +.......+..++.++...|
T Consensus 154 ~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g 231 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKG 231 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcC
Confidence 44566666666666666533 22 234556666666666666666666666653 11111344444555566666
Q ss_pred CHHHHHHHHHHHHH
Q 002666 801 NITEANGLFERFKE 814 (895)
Q Consensus 801 ~~~~A~~~~~~~~~ 814 (895)
+.++|.+.++++++
T Consensus 232 ~~~~A~~~~~~vi~ 245 (263)
T PRK10803 232 DTAKAKAVYQQVIK 245 (263)
T ss_pred CHHHHHHHHHHHHH
Confidence 66666666666665
No 205
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.28 E-value=0.0038 Score=50.09 Aligned_cols=77 Identities=21% Similarity=0.308 Sum_probs=52.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCC-CCChHhHHHHHHHHHhcC--------ChhhHHHHHHHHHHCCCCCCHHHHHHH
Q 002666 233 LIRVFAREGRVDDALFLLDEMKNNAF-SVDIVLYNVCIDCFGKVG--------KVDMAWKFFHEMKAQGVAPDDVTYTSM 303 (895)
Q Consensus 233 l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--------~~~~A~~~~~~~~~~g~~p~~~~~~~l 303 (895)
-+..+...+++.....+|+.+++.|+ -|++.+|+.++...++.. ++-+.+.+++.|+..+++|+..+|+.+
T Consensus 31 ~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYniv 110 (120)
T PF08579_consen 31 NINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIV 110 (120)
T ss_pred HHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHH
Confidence 34445555777777777777777776 677777777777666442 234566777778777788888888877
Q ss_pred HHHHHh
Q 002666 304 IGVLCK 309 (895)
Q Consensus 304 ~~~~~~ 309 (895)
+..+.+
T Consensus 111 l~~Llk 116 (120)
T PF08579_consen 111 LGSLLK 116 (120)
T ss_pred HHHHHH
Confidence 776654
No 206
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.27 E-value=0.0008 Score=50.66 Aligned_cols=52 Identities=19% Similarity=0.331 Sum_probs=32.1
Q ss_pred hcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 002666 379 KKGRVTEAMKIFEAMKKDARPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEA 430 (895)
Q Consensus 379 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 430 (895)
+.|++++|+++|+++....|.+..++..++.+|.+.|++++|..+++++...
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4566666666666666666666666666666666666666666666666554
No 207
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.26 E-value=0.036 Score=54.34 Aligned_cols=165 Identities=13% Similarity=0.159 Sum_probs=88.9
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHH-CCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-----CHHH
Q 002666 683 IYSSLIDGFGKVGRIDEAYLIMEELMQ-KGLTP---NAYTWNCLLDALVKAEEISEAFVCFQSMKDLKCTP-----NHVT 753 (895)
Q Consensus 683 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-----~~~~ 753 (895)
.|..+.+++.+..++.+++.+-..-.. .|..| ......++..++.-.+.++++++.|+...+..... ....
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 344455555555555555555444333 12222 11223345556666666777777777666521111 1245
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHC----CCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCC-
Q 002666 754 YSIIINGLCRVRKFNKAFVFWQEMQKQ----GFKPNT-----ITYTTMISGLAKAGNITEANGLFERFKE----NGGVP- 819 (895)
Q Consensus 754 ~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p- 819 (895)
|-.|...|....++++|..+..++.+. ++..-. .+...+..++...|.+..|.+.-++..+ .|..|
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~ 244 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRAL 244 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHH
Confidence 666777777777777777666655432 211111 1233444456667777777666665533 34433
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 002666 820 DSACYNAMMEGLSNANRAMDAYTLFEET 847 (895)
Q Consensus 820 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 847 (895)
...+...+++.|...|+.+.|..-|+.+
T Consensus 245 ~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 245 QARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 3455566777777777777777777654
No 208
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.24 E-value=0.12 Score=52.30 Aligned_cols=108 Identities=19% Similarity=0.174 Sum_probs=70.5
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHc
Q 002666 265 YNVCIDCFGKVGKVDMAWKFFHEMKAQGVAPDDVTYTSMIGVLCKSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGS 344 (895)
Q Consensus 265 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 344 (895)
.+..+.-+...|....|.++-.+.. .|+...|...+.+++..++|++-.++... + -++.-|..++..+.+
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s--k----KsPIGyepFv~~~~~ 249 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS--K----KSPIGYEPFVEACLK 249 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC--C----CCCCChHHHHHHHHH
Confidence 3344555566777777777765553 35777777888888888888766654332 1 134667777777778
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 002666 345 VGKFDEAFSLFERLKQKGCIPSVIAYNSLLTCLGKKGRVTEAMKIFEA 392 (895)
Q Consensus 345 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 392 (895)
.|+..+|..+..++ .+..-+..|.+.|++.+|.+.--+
T Consensus 250 ~~~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 250 YGNKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred CCCHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHHHH
Confidence 88888877777661 124456667777887777766443
No 209
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.21 E-value=0.32 Score=49.50 Aligned_cols=136 Identities=18% Similarity=0.283 Sum_probs=96.2
Q ss_pred CHHhHHHHHHHHHccCCHHHHHHHHHHHHHcC-CCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHH-HHH
Q 002666 645 TVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKG-IELNTVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNAYTW-NCL 722 (895)
Q Consensus 645 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~-~~l 722 (895)
-..+|...++...+..-++.|..+|-++.+.+ ..+++.++++++..++ .|+..-|..+|+--+.. .||...| +-.
T Consensus 396 ~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~ky 472 (660)
T COG5107 396 LTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKY 472 (660)
T ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHH
Confidence 34566777777777778888999999888887 5667778888887666 47888888888876663 2343333 334
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCH
Q 002666 723 LDALVKAEEISEAFVCFQSMKDLKCTPN--HVTYSIIINGLCRVRKFNKAFVFWQEMQKQGFKPNT 786 (895)
Q Consensus 723 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 786 (895)
+.-+...++-..|..+|+..... +..+ ...|..+++--..-|+...+..+=++|.+ ..|-.
T Consensus 473 l~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQe 535 (660)
T COG5107 473 LLFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQE 535 (660)
T ss_pred HHHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcH
Confidence 55566778888888888855541 1222 35788888877888888888888888776 34444
No 210
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.15 E-value=0.0005 Score=41.89 Aligned_cols=29 Identities=34% Similarity=0.646 Sum_probs=15.5
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHHCC
Q 002666 264 LYNVCIDCFGKVGKVDMAWKFFHEMKAQG 292 (895)
Q Consensus 264 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 292 (895)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555443
No 211
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.14 E-value=0.0088 Score=48.06 Aligned_cols=76 Identities=21% Similarity=0.374 Sum_probs=45.6
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHhcCCCCCHHHHHH
Q 002666 686 SLIDGFGKVGRIDEAYLIMEELMQKGL-TPNAYTWNCLLDALVKAE--------EISEAFVCFQSMKDLKCTPNHVTYSI 756 (895)
Q Consensus 686 ~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g--------~~~~A~~~~~~~~~~~~~p~~~~~~~ 756 (895)
..|..+...+++.....+|+.+.+.|+ .|+..+|+.++.+.++.. .+-+.+.+|+.|+..+++|+..+|+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 344455555777777777777777777 677777777776655432 12344455555555555555555555
Q ss_pred HHHHH
Q 002666 757 IINGL 761 (895)
Q Consensus 757 l~~~~ 761 (895)
++..+
T Consensus 110 vl~~L 114 (120)
T PF08579_consen 110 VLGSL 114 (120)
T ss_pred HHHHH
Confidence 55444
No 212
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.10 E-value=0.11 Score=54.99 Aligned_cols=102 Identities=18% Similarity=0.199 Sum_probs=55.6
Q ss_pred HhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 002666 333 YAYNTMIMGYGSVGKFDEAFSLFERLKQKGCIPSVIAYNSLLTCLGKKGRVTEAMKIFEAMKKDARPNNTTYNVLIDMLC 412 (895)
Q Consensus 333 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 412 (895)
..+.+=+..|...|.+++|.++-- .| ....-|..|.......=+++-|.+.|.+...
T Consensus 557 vp~~~~m~q~Ieag~f~ea~~iac----lg--Vv~~DW~~LA~~ALeAL~f~~ARkAY~rVRd----------------- 613 (1081)
T KOG1538|consen 557 VPQSAPMYQYIERGLFKEAYQIAC----LG--VTDTDWRELAMEALEALDFETARKAYIRVRD----------------- 613 (1081)
T ss_pred ccccccchhhhhccchhhhhcccc----cc--eecchHHHHHHHHHhhhhhHHHHHHHHHHhc-----------------
Confidence 334444445666677666654321 11 1222344555444444455555555544432
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHh
Q 002666 413 KAGNFEDALKFRDAMKEAGLFPNVMTVNIMVDRLCKAQKLDEAFSIFEGM 462 (895)
Q Consensus 413 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 462 (895)
-.+-+...-++++.++|-.|+... +...+.-.|++.+|.++|.+-
T Consensus 614 --l~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~ 658 (1081)
T KOG1538|consen 614 --LRYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKRS 658 (1081)
T ss_pred --cHHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHHc
Confidence 233344555677777777676543 445566778888888887643
No 213
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.10 E-value=0.0033 Score=48.07 Aligned_cols=56 Identities=20% Similarity=0.100 Sum_probs=39.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 002666 794 SGLAKAGNITEANGLFERFKENGGVP-DSACYNAMMEGLSNANRAMDAYTLFEETRRKG 851 (895)
Q Consensus 794 ~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 851 (895)
..|.+.+++++|++.++++++ ..| ++..+...+.++.+.|++++|...++++++.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALE--LDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHH--hCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 346677777777777777777 455 56667777777777777777777777777663
No 214
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.04 E-value=0.00086 Score=40.82 Aligned_cols=29 Identities=38% Similarity=1.006 Sum_probs=14.6
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHhcC
Q 002666 334 AYNTMIMGYGSVGKFDEAFSLFERLKQKG 362 (895)
Q Consensus 334 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 362 (895)
+|+.++.+|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 44555555555555555555555554443
No 215
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.94 E-value=0.47 Score=46.73 Aligned_cols=168 Identities=20% Similarity=0.164 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHH
Q 002666 227 VHLFTTLIRVFAREGRVDDALFLLDEMKNN-AFSVDIVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGVAPDDVTYTSMIG 305 (895)
Q Consensus 227 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~ 305 (895)
..........+...+.+..+...+...... ........+......+...+++..+.+.+.........+ .........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHH
Confidence 344455555555666666666665555431 112333444444555555555555665555555432222 111111222
Q ss_pred -HHHhcCCHhHHHHHHHHHhhCCC--CCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 002666 306 -VLCKSKRLEEAVAMFEQMDRNRE--VPCAYAYNTMIMGYGSVGKFDEAFSLFERLKQKGCIPSVIAYNSLLTCLGKKGR 382 (895)
Q Consensus 306 -~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 382 (895)
.+...|+++.|...+.+.....+ ......+......+...++.+.+...+.+............+..+...+...++
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 138 GALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHccc
Confidence 45555555555555555533221 012222222222333444444444444444443211012333334444444444
Q ss_pred HHHHHHHHHHHhc
Q 002666 383 VTEAMKIFEAMKK 395 (895)
Q Consensus 383 ~~~A~~~~~~~~~ 395 (895)
++.|...+.....
T Consensus 218 ~~~a~~~~~~~~~ 230 (291)
T COG0457 218 YEEALEYYEKALE 230 (291)
T ss_pred HHHHHHHHHHHHh
Confidence 4444444444433
No 216
>PRK15331 chaperone protein SicA; Provisional
Probab=96.94 E-value=0.025 Score=49.62 Aligned_cols=86 Identities=13% Similarity=0.006 Sum_probs=39.3
Q ss_pred HccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 002666 343 GSVGKFDEAFSLFERLKQKGCIPSVIAYNSLLTCLGKKGRVTEAMKIFEAMKKDARPNNTTYNVLIDMLCKAGNFEDALK 422 (895)
Q Consensus 343 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 422 (895)
...|++++|..+|.-+...++. +...+..|..++...+++++|+..|.......+.|+..+...+.++...|+.+.|..
T Consensus 48 y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~ 126 (165)
T PRK15331 48 YNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQ 126 (165)
T ss_pred HHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHH
Confidence 3444444444444444443321 333344444444444444455444444433333444444445555555555555555
Q ss_pred HHHHHHH
Q 002666 423 FRDAMKE 429 (895)
Q Consensus 423 ~~~~~~~ 429 (895)
.|....+
T Consensus 127 ~f~~a~~ 133 (165)
T PRK15331 127 CFELVNE 133 (165)
T ss_pred HHHHHHh
Confidence 5554444
No 217
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.89 E-value=0.019 Score=54.74 Aligned_cols=102 Identities=13% Similarity=0.199 Sum_probs=68.6
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCC-CHHHHHHH
Q 002666 753 TYSIIINGLCRVRKFNKAFVFWQEMQKQGFKP---NTITYTTMISGLAKAGNITEANGLFERFKEN-GGVP-DSACYNAM 827 (895)
Q Consensus 753 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p-~~~~~~~l 827 (895)
.|+.-+..+ ..|+|.+|...|...++. ++. ....+..|+.++...|++++|...|..+.+. +-.| -+..+..|
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~-YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKK-YPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHc-CCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 466555443 556688888888777765 121 1345666777788888888888888777763 2223 36777777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHh
Q 002666 828 MEGLSNANRAMDAYTLFEETRRKGFNIHTK 857 (895)
Q Consensus 828 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 857 (895)
+....+.|+.++|...|+++.+. +|....
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~-YP~t~a 250 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKR-YPGTDA 250 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHH-CCCCHH
Confidence 77888888888888888887776 454443
No 218
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.88 E-value=0.026 Score=54.57 Aligned_cols=188 Identities=10% Similarity=0.032 Sum_probs=127.7
Q ss_pred HccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHH--HHH--HHHHHHHhcCCH
Q 002666 692 GKVGRIDEAYLIMEELMQKGLTPNAYTWNCLLDALVKAEEISEAFVCFQSMKDLKCTPNHV--TYS--IIINGLCRVRKF 767 (895)
Q Consensus 692 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~--~~~--~l~~~~~~~g~~ 767 (895)
...|+..+|...++++++. .+.|..+++-.-.+|.-.|+...-...+++++-. ..++.. +|- .+.-++.+.|-+
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 3468899999999999985 5558888888888999999999999999998852 234442 222 455667789999
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 002666 768 NKAFVFWQEMQKQGFKPNTITYTTMISGLAKAGNITEANGLFERFKEN---GGVPDSACYNAMMEGLSNANRAMDAYTLF 844 (895)
Q Consensus 768 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 844 (895)
++|.+.-++..+.+ +.|.-..-++...+...|+..++.+...+-... +-..-...|-..+-.+...+.++.|+++|
T Consensus 192 ~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 192 DDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 99999999988753 335555566777788899999999887665432 11112344556666778889999999999
Q ss_pred HHHHHCCCCC-CHhh---HHHHHHHHHhcCCHHHHHHHHHHH
Q 002666 845 EETRRKGFNI-HTKT---CVILLDALHKAECLEQAAIVGAVL 882 (895)
Q Consensus 845 ~~~~~~~~~~-~~~~---~~~l~~~~~~~g~~~~A~~~~~~l 882 (895)
+.-+-+.... |... +..+--+......|.+-..+.+-+
T Consensus 271 D~ei~k~l~k~Da~a~~~~ld~dgv~~~~d~~~kld~la~~l 312 (491)
T KOG2610|consen 271 DREIWKRLEKDDAVARDVYLDLDGVDLRSDLWRKLDKLADSL 312 (491)
T ss_pred HHHHHHHhhccchhhhhhhhhhhhHHhHHHHHHHHHhhhhhh
Confidence 8644443333 3322 122344445555555555444433
No 219
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.87 E-value=0.98 Score=50.12 Aligned_cols=50 Identities=14% Similarity=0.249 Sum_probs=21.6
Q ss_pred HHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHH
Q 002666 270 DCFGKVGKVDMAWKFFHEMKAQGVAPDDVTYTSMIGVLCKSKRLEEAVAMF 320 (895)
Q Consensus 270 ~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 320 (895)
.-|....+..+-..+++.+.+.|+. +...-..|+.+|.+.++.++-.++.
T Consensus 405 ~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI 454 (933)
T KOG2114|consen 405 KKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFI 454 (933)
T ss_pred HHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHH
Confidence 3333444444444444444444433 3333334444444444444444333
No 220
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.86 E-value=0.029 Score=53.57 Aligned_cols=89 Identities=18% Similarity=0.199 Sum_probs=45.9
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCC---CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhc
Q 002666 725 ALVKAEEISEAFVCFQSMKDLKCTP---NHVTYSIIINGLCRVRKFNKAFVFWQEMQKQ-GFKP-NTITYTTMISGLAKA 799 (895)
Q Consensus 725 ~~~~~g~~~~A~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p-~~~~~~~l~~~~~~~ 799 (895)
.+.+.|++..|...|...++.. +. ....+.+|+.++...|++++|..+|..+.+. +-.| -+..+--|+.+..+.
T Consensus 150 ~~~ksgdy~~A~~~F~~fi~~Y-P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l 228 (262)
T COG1729 150 DLYKSGDYAEAEQAFQAFIKKY-PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRL 228 (262)
T ss_pred HHHHcCCHHHHHHHHHHHHHcC-CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHh
Confidence 3445555666666666655522 11 1133445555666666666666666555543 1111 134555555555556
Q ss_pred CCHHHHHHHHHHHHH
Q 002666 800 GNITEANGLFERFKE 814 (895)
Q Consensus 800 g~~~~A~~~~~~~~~ 814 (895)
|+.++|...++++.+
T Consensus 229 ~~~d~A~atl~qv~k 243 (262)
T COG1729 229 GNTDEACATLQQVIK 243 (262)
T ss_pred cCHHHHHHHHHHHHH
Confidence 666666666666555
No 221
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.85 E-value=0.021 Score=52.24 Aligned_cols=81 Identities=25% Similarity=0.458 Sum_probs=43.7
Q ss_pred CHHHHHHHHHHHHh-----cCChhHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCC-----------------hhhHHH
Q 002666 226 SVHLFTTLIRVFAR-----EGRVDDALFLLDEMKNNAFSVDIVLYNVCIDCFGKVGK-----------------VDMAWK 283 (895)
Q Consensus 226 ~~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-----------------~~~A~~ 283 (895)
+..+|..++..+.+ .|-.+-....+..|.+.|+..|..+|+.|++++=+ |+ .+-|++
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fvp~n~fQ~~F~hyp~Qq~c~i~ 124 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFVPRNFFQAEFMHYPRQQECAID 124 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcccccHHHHHhccCcHHHHHHHH
Confidence 44555555555543 34455555556666666666666666666666543 22 233445
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHH
Q 002666 284 FFHEMKAQGVAPDDVTYTSMIGVL 307 (895)
Q Consensus 284 ~~~~~~~~g~~p~~~~~~~l~~~~ 307 (895)
++++|...|+-||..++..++..+
T Consensus 125 lL~qME~~gV~Pd~Et~~~ll~iF 148 (228)
T PF06239_consen 125 LLEQMENNGVMPDKETEQMLLNIF 148 (228)
T ss_pred HHHHHHHcCCCCcHHHHHHHHHHh
Confidence 555555555555555555555544
No 222
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.83 E-value=0.32 Score=49.76 Aligned_cols=31 Identities=16% Similarity=-0.012 Sum_probs=23.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 002666 820 DSACYNAMMEGLSNANRAMDAYTLFEETRRK 850 (895)
Q Consensus 820 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 850 (895)
+...+..++.+..-.|++++|...+++|.+.
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 4555567777788888888888888888766
No 223
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.79 E-value=0.035 Score=55.88 Aligned_cols=96 Identities=9% Similarity=0.065 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHH
Q 002666 752 VTYSIIINGLCRVRKFNKAFVFWQEMQKQGFKPNTITYTTMISGLAKAGNITEANGLFERFKENGGVP-DSACYNAMMEG 830 (895)
Q Consensus 752 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~ 830 (895)
..++.+.-+|.+.+++.+|++..++.++.. ++|.....--+.++...|+++.|+..|+++++ +.| |..+-..|+..
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k--~~P~Nka~~~el~~l 334 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALK--LEPSNKAARAELIKL 334 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHH--hCCCcHHHHHHHHHH
Confidence 345667778888888888888888888752 45666777778888888888999988888888 777 55556666666
Q ss_pred HHhcCCHH-HHHHHHHHHHHC
Q 002666 831 LSNANRAM-DAYTLFEETRRK 850 (895)
Q Consensus 831 ~~~~g~~~-~A~~~~~~~~~~ 850 (895)
-.+..+.. +..++|..|..+
T Consensus 335 ~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 335 KQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 55554443 346788888766
No 224
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.77 E-value=0.63 Score=45.77 Aligned_cols=223 Identities=19% Similarity=0.120 Sum_probs=142.8
Q ss_pred cCChHHHHHHHHHHHHCCCCC-CHHhHHHHHHHHHccCCHHHHHHHHHHHHHc-CCCcCHHHHHHHHHHHHccCCHHHHH
Q 002666 624 SGKVNKAYQLLEEMKTKGHYP-TVVTYGSVIDGLAKIDRLDEAYMLFEEAKSK-GIELNTVIYSSLIDGFGKVGRIDEAY 701 (895)
Q Consensus 624 ~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~ 701 (895)
.+....+...+.......... ....+......+...+.+..+...+...... ........+......+...+++..+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 355666666666666553221 2455666667777788888888877777652 22445556666677777777788888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 002666 702 LIMEELMQKGLTPNAYTWNCLLD-ALVKAEEISEAFVCFQSMKDLKC--TPNHVTYSIIINGLCRVRKFNKAFVFWQEMQ 778 (895)
Q Consensus 702 ~~~~~~~~~~~~p~~~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 778 (895)
..+.........+ ......... .+...|+++.|...+.+...... ......+......+...+++++|...+.++.
T Consensus 116 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 116 ELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 8888877743222 122222333 67778888888888888765221 0122334444444666778888888888877
Q ss_pred HCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 002666 779 KQGFKP-NTITYTTMISGLAKAGNITEANGLFERFKENGGVPD-SACYNAMMEGLSNANRAMDAYTLFEETRRK 850 (895)
Q Consensus 779 ~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 850 (895)
.. ... ....+..+...+...++++.|...+..... ..|+ ...+..+...+...|+.+++...+++....
T Consensus 195 ~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 195 KL-NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALE--LDPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred hh-CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHh--hCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 64 222 356677777777777888888888888877 4443 455566666666666788888887777766
No 225
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.77 E-value=0.0078 Score=45.98 Aligned_cols=56 Identities=16% Similarity=0.154 Sum_probs=36.9
Q ss_pred HHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 002666 375 TCLGKKGRVTEAMKIFEAMKKDARPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEA 430 (895)
Q Consensus 375 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 430 (895)
..|.+.+++++|.++++.+....|.++..+...+.++...|++++|.+.+++..+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 34556666666666666666666666666666666666666666666666666654
No 226
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.73 E-value=0.26 Score=45.87 Aligned_cols=207 Identities=14% Similarity=0.140 Sum_probs=107.2
Q ss_pred HHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHH
Q 002666 611 TRAYNTVVDGFCKSGKVNKAYQLLEEMKTKGHYPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNTVIYSSLIDG 690 (895)
Q Consensus 611 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 690 (895)
...|.....+|....++++|...+.+..+- ...+...|. ..+.++.|.-+.+++.+. +--...|+.....
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-------AAKayEqaamLake~~kl--sEvvdl~eKAs~l 100 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-------AAKAYEQAAMLAKELSKL--SEVVDLYEKASEL 100 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-------HHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHH
Confidence 345555666777777777777776666532 111221111 122345555555555443 1223355555666
Q ss_pred HHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--CH---HHHHHHHHHHHhcC
Q 002666 691 FGKVGRIDEAYLIMEELMQKGLTPNAYTWNCLLDALVKAEEISEAFVCFQSMKDLKCTP--NH---VTYSIIINGLCRVR 765 (895)
Q Consensus 691 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~---~~~~~l~~~~~~~g 765 (895)
|...|.++-|-..+++.-+ ..+..++++|+++|++....-... +. .-|.....++.+..
T Consensus 101 Y~E~GspdtAAmaleKAak----------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~ 164 (308)
T KOG1585|consen 101 YVECGSPDTAAMALEKAAK----------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLE 164 (308)
T ss_pred HHHhCCcchHHHHHHHHHH----------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhH
Confidence 6677766666666655544 123445666666666655311111 11 22334455666777
Q ss_pred CHhHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CC-CHHHHHHHHHHHHhcCCH
Q 002666 766 KFNKAFVFWQEMQKQ----GFKPNT-ITYTTMISGLAKAGNITEANGLFERFKENGG--VP-DSACYNAMMEGLSNANRA 837 (895)
Q Consensus 766 ~~~~A~~~~~~~~~~----~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~p-~~~~~~~l~~~~~~~g~~ 837 (895)
++++|-..+.+-... .-.|+. ..+...|-.+.-..++..|.+.++...+.+- .| +..+...|+.+| ..|+.
T Consensus 165 kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~ 243 (308)
T KOG1585|consen 165 KFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDI 243 (308)
T ss_pred HhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCH
Confidence 777776666554321 111222 2344555555666677777777777554321 12 445555665544 44677
Q ss_pred HHHHHHH
Q 002666 838 MDAYTLF 844 (895)
Q Consensus 838 ~~A~~~~ 844 (895)
+++-+++
T Consensus 244 E~~~kvl 250 (308)
T KOG1585|consen 244 EEIKKVL 250 (308)
T ss_pred HHHHHHH
Confidence 6665443
No 227
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.67 E-value=0.19 Score=53.28 Aligned_cols=53 Identities=19% Similarity=0.224 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002666 369 AYNSLLTCLGKKGRVTEAMKIFEAMKKDARPNNTTYNVLIDMLCKAGNFEDALKFRDAMKE 429 (895)
Q Consensus 369 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 429 (895)
+...+..-+.+...+..|-++|.+|-. ...+++.....++|.+|..+.++..+
T Consensus 749 ~l~~~a~ylk~l~~~gLAaeIF~k~gD--------~ksiVqlHve~~~W~eAFalAe~hPe 801 (1081)
T KOG1538|consen 749 PLLLCATYLKKLDSPGLAAEIFLKMGD--------LKSLVQLHVETQRWDEAFALAEKHPE 801 (1081)
T ss_pred HHHHHHHHHhhccccchHHHHHHHhcc--------HHHHhhheeecccchHhHhhhhhCcc
Confidence 344444444455555666666665543 33455566666666666666655544
No 228
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.65 E-value=0.032 Score=56.15 Aligned_cols=138 Identities=12% Similarity=-0.053 Sum_probs=98.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 002666 721 CLLDALVKAEEISEAFVCFQSMKDLKCTPNHVTYSIIINGLCRVRKFNKAFVFWQEMQKQGFKPNTITYTTMISGLAKAG 800 (895)
Q Consensus 721 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 800 (895)
.-++.|.+.|++..|...|++++..- . |.+.-+.++..... ..-..++..|..++.+.+
T Consensus 213 e~Gn~~fK~gk~~~A~~~Yerav~~l--~-----------~~~~~~~ee~~~~~--------~~k~~~~lNlA~c~lKl~ 271 (397)
T KOG0543|consen 213 ERGNVLFKEGKFKLAKKRYERAVSFL--E-----------YRRSFDEEEQKKAE--------ALKLACHLNLAACYLKLK 271 (397)
T ss_pred HhhhHHHhhchHHHHHHHHHHHHHHh--h-----------ccccCCHHHHHHHH--------HHHHHHhhHHHHHHHhhh
Confidence 34567778888888888887766510 0 11111112211111 112346788888999999
Q ss_pred CHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHH-HHH
Q 002666 801 NITEANGLFERFKENGGVP-DSACYNAMMEGLSNANRAMDAYTLFEETRRKGFNIHTKTCVILLDALHKAECLEQA-AIV 878 (895)
Q Consensus 801 ~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~ 878 (895)
++.+|++..++.++ ..| |......-+.++...|+++.|+..|+++++.. |.|..+...|+.+-.+..+.++. .++
T Consensus 272 ~~~~Ai~~c~kvLe--~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~-P~Nka~~~el~~l~~k~~~~~~kekk~ 348 (397)
T KOG0543|consen 272 EYKEAIESCNKVLE--LDPNNVKALYRRGQALLALGEYDLARDDFQKALKLE-PSNKAARAELIKLKQKIREYEEKEKKM 348 (397)
T ss_pred hHHHHHHHHHHHHh--cCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999 555 88899999999999999999999999999984 77777777888887777666665 333
Q ss_pred HHHH
Q 002666 879 GAVL 882 (895)
Q Consensus 879 ~~~l 882 (895)
...|
T Consensus 349 y~~m 352 (397)
T KOG0543|consen 349 YANM 352 (397)
T ss_pred HHHH
Confidence 4433
No 229
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.63 E-value=0.0053 Score=47.65 Aligned_cols=62 Identities=18% Similarity=0.249 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002666 787 ITYTTMISGLAKAGNITEANGLFERFKEN----GGV-PD-SACYNAMMEGLSNANRAMDAYTLFEETR 848 (895)
Q Consensus 787 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~-p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 848 (895)
.+++.+...|...|++++|+..+++.++. |.. |+ ..++..++.++...|++++|++++++.+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34555555566666666666666655432 100 11 3345555555555556665655555544
No 230
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.63 E-value=0.005 Score=47.82 Aligned_cols=61 Identities=10% Similarity=0.217 Sum_probs=26.1
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHC--CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002666 753 TYSIIINGLCRVRKFNKAFVFWQEMQKQ--GFKPN----TITYTTMISGLAKAGNITEANGLFERFK 813 (895)
Q Consensus 753 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 813 (895)
+|+.+..+|...|++++|++.+++..+. ...++ ..++..++.++...|++++|++++++.+
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444444444555555555554444422 01111 2234444444445555555555544443
No 231
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.63 E-value=1.5 Score=48.13 Aligned_cols=108 Identities=16% Similarity=0.189 Sum_probs=78.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 002666 719 WNCLLDALVKAEEISEAFVCFQSMKDLKCTPNHVTYSIIINGLCRVRKFNKAFVFWQEMQKQGFKPNTITYTTMISGLAK 798 (895)
Q Consensus 719 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 798 (895)
.+--+.-+...|+..+|.++-.+.. -||..-|..-+.++...+++++-.++-+.+.. +.-|.-.+.+|.+
T Consensus 687 l~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskks------PIGy~PFVe~c~~ 756 (829)
T KOG2280|consen 687 LHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKKS------PIGYLPFVEACLK 756 (829)
T ss_pred HHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC------CCCchhHHHHHHh
Confidence 3444555677888889888877765 37777788888889999999888777666542 2334457778889
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 002666 799 AGNITEANGLFERFKENGGVPDSACYNAMMEGLSNANRAMDAYTLFE 845 (895)
Q Consensus 799 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 845 (895)
.|+.++|.+++.+.-. .. ....+|.+.|++.+|.+..-
T Consensus 757 ~~n~~EA~KYiprv~~-----l~----ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 757 QGNKDEAKKYIPRVGG-----LQ----EKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred cccHHHHhhhhhccCC-----hH----HHHHHHHHhccHHHHHHHHH
Confidence 9999999888766532 11 56778888899988887643
No 232
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.63 E-value=0.1 Score=56.56 Aligned_cols=121 Identities=17% Similarity=0.052 Sum_probs=62.4
Q ss_pred CCHhHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHHCCC-CC--CHHHHHHHHHHHHhcCCHHHH
Q 002666 765 RKFNKAFVFWQEMQKQGFKPNTITYTT-MISGLAKAGNITEANGLFERFKENGG-VP--DSACYNAMMEGLSNANRAMDA 840 (895)
Q Consensus 765 g~~~~A~~~~~~~~~~~~~p~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~-~p--~~~~~~~l~~~~~~~g~~~~A 840 (895)
...+.|.++++.+.+. -|+...|.. -.+.+...|++++|++.|+++..... -| ...++..+++.+.-.++|++|
T Consensus 247 ~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A 324 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEA 324 (468)
T ss_pred CCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHH
Confidence 3455566666666542 344433322 23345556666666666665543110 11 234455666666666666666
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCH-------HHHHHHHHHHHHHHH
Q 002666 841 YTLFEETRRKGFNIHTKTCVILLDALHKAECL-------EQAAIVGAVLRETAK 887 (895)
Q Consensus 841 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-------~~A~~~~~~l~~~~~ 887 (895)
...+..+.+...-......+..+-++...|+. ++|.....++.+...
T Consensus 325 ~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~ 378 (468)
T PF10300_consen 325 AEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQ 378 (468)
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHh
Confidence 66666666553222233333455555556666 555555555555444
No 233
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.54 E-value=0.05 Score=49.92 Aligned_cols=105 Identities=22% Similarity=0.394 Sum_probs=72.8
Q ss_pred CCChHhHHHHHHHHHh-----cCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCCHH
Q 002666 259 SVDIVLYNVCIDCFGK-----VGKVDMAWKFFHEMKAQGVAPDDVTYTSMIGVLCKSKRLEEAVAMFEQMDRNREVPCAY 333 (895)
Q Consensus 259 ~~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 333 (895)
..+-.+|..++..|.+ .|.++-....+..|.+.|+.-|..+|+.|++++=+ |.+- |..
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv---------------p~n- 106 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV---------------PRN- 106 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc---------------ccc-
Confidence 4567778888887764 47888888899999999999999999999998754 3322 111
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 002666 334 AYNTMIMGYGSVGKFDEAFSLFERLKQKGCIPSVIAYNSLLTCLGKKGR 382 (895)
Q Consensus 334 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 382 (895)
.+.++-. -.-.+.+-|++++++|...|+-||..++..+++.+.+.+.
T Consensus 107 ~fQ~~F~--hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 107 FFQAEFM--HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHhc--cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 1111111 1223456677888888888888888888888887766554
No 234
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.53 E-value=0.12 Score=46.02 Aligned_cols=69 Identities=28% Similarity=0.422 Sum_probs=37.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHhh
Q 002666 788 TYTTMISGLAKAGNITEANGLFERFKENGGVP-DSACYNAMMEGLSNANRAMDAYTLFEETRR-----KGFNIHTKT 858 (895)
Q Consensus 788 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~ 858 (895)
+...++..+...|++++|+...++++. ..| +...|..++.+|...|+..+|++.|+++.. .|++|...+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~--~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALA--LDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 344455556666666777666666666 455 566666666667777776666666665432 255555543
No 235
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.48 E-value=0.31 Score=47.20 Aligned_cols=143 Identities=19% Similarity=0.156 Sum_probs=68.2
Q ss_pred HHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHH
Q 002666 376 CLGKKGRVTEAMKIFEAMKKDARPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEAGLFPNVMTVNIMVDRLCKAQKLDEA 455 (895)
Q Consensus 376 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 455 (895)
.....|++.+|...|.......+.+..+-..++.+|...|+.+.|..++..+...--.........-+..+.+.....+.
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~ 222 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEI 222 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCH
Confidence 34455666666666666665555566666666666666666666666666554321111111111222333333333333
Q ss_pred HHHHHHhhhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCC-cchhhHHHHHHHHHhcC
Q 002666 456 FSIFEGMDHKTCTPDAVTFCSLIDGLGKNGRVDDAYKFYEKMLDTDQI-PNAILYTSLIRNFFKHG 520 (895)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~ 520 (895)
..+-.+.... +.|...-..+...+...|+.++|.+.+-.+++++.. .+...-..++..+.-.|
T Consensus 223 ~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 223 QDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred HHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 3333332222 224445555666666666666666665555544221 23333444444443333
No 236
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.46 E-value=0.57 Score=48.01 Aligned_cols=78 Identities=13% Similarity=0.132 Sum_probs=49.7
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcC---CCcCHHHHHHHHHHHHh---cCChhHHHHHHHHHHhCCCCCChHhHHHHH
Q 002666 196 TTLIGALATVRESNLMLNLFHQMQELG---YEVSVHLFTTLIRVFAR---EGRVDDALFLLDEMKNNAFSVDIVLYNVCI 269 (895)
Q Consensus 196 ~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 269 (895)
..++-+|....+++..+++.+.+.... +.....+-...+-++.+ .|+.++|++++..++.....++..+|..++
T Consensus 145 ~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~G 224 (374)
T PF13281_consen 145 INLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLG 224 (374)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 344445777778888888888776641 11233333445555666 778888888887755554467777777777
Q ss_pred HHHH
Q 002666 270 DCFG 273 (895)
Q Consensus 270 ~~~~ 273 (895)
+.|.
T Consensus 225 RIyK 228 (374)
T PF13281_consen 225 RIYK 228 (374)
T ss_pred HHHH
Confidence 6664
No 237
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.39 E-value=0.95 Score=43.15 Aligned_cols=57 Identities=14% Similarity=0.071 Sum_probs=34.8
Q ss_pred HHHhcCChhHHHHHHHHHHHc--CCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 002666 201 ALATVRESNLMLNLFHQMQEL--GYEVSVHLFTTLIRVFAREGRVDDALFLLDEMKNNA 257 (895)
Q Consensus 201 ~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 257 (895)
.-.+.|++++|...|+.+... +.+....+...++.++.+.+++++|+..+++..+..
T Consensus 43 ~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ly 101 (254)
T COG4105 43 TELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLY 101 (254)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC
Confidence 334667777777777766643 112234455666666677777777777777766654
No 238
>PRK11619 lytic murein transglycosylase; Provisional
Probab=96.33 E-value=2.7 Score=47.64 Aligned_cols=464 Identities=11% Similarity=0.034 Sum_probs=239.0
Q ss_pred hhHHHHHHHHhhcCCCCchHHHhhhhcC-CCCChHHHHHHHh-hcC--ChHHHHHHHHHhhhcCCCCCCHHHHHHHHHHH
Q 002666 57 RTVVDDVYNILHAGPWGPAVENALSSLD-GMPQPGLVIGVLR-RLK--DVNLAINYFRWVERKTDQAHSLEAYNSLLMVM 132 (895)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~l~-~~~--~~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~l 132 (895)
+....+..+.+++++|... ......+. .++.|-+--..|. .++ .++.... ++.+.++.|.....-..-...+
T Consensus 34 r~~f~~A~~a~~~g~~~~~-~~~~~~l~d~pL~~yl~y~~L~~~l~~~~~~ev~~---Fl~~~~~~P~~~~Lr~~~l~~L 109 (644)
T PRK11619 34 RQRYQQIKQAWDNRQMDVV-EQLMPTLKDYPLYPYLEYRQLTQDLMNQPAVQVTN---FIRANPTLPPARSLQSRFVNEL 109 (644)
T ss_pred HHHHHHHHHHHHCCCHHHH-HHHHHhccCCCcHhHHHHHHHHhccccCCHHHHHH---HHHHCCCCchHHHHHHHHHHHH
Confidence 5677788888889987653 33334443 3343444334443 333 3443333 4555566665556666667777
Q ss_pred HccCCcchHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCChhHHH
Q 002666 133 AVSKNFEPLEEILGEMSLAGIGPTNNTCIELVVSCVKSKMLREAFDIIQTMRKFKFRPAFTAYTTLIGALATVRESNLML 212 (895)
Q Consensus 133 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 212 (895)
++.+++......+ ...+.+...-.....+....|+.++|......+...|. ..+..+..++..
T Consensus 110 a~~~~w~~~~~~~-----~~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~-~~p~~cd~l~~~----------- 172 (644)
T PRK11619 110 ARREDWRGLLAFS-----PEKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGK-SLPNACDKLFSV----------- 172 (644)
T ss_pred HHccCHHHHHHhc-----CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC-CCChHHHHHHHH-----------
Confidence 8888887766632 11345555556677778888988888877777765542 223334444444
Q ss_pred HHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHCC
Q 002666 213 NLFHQMQELGYEVSVHLFTTLIRVFAREGRVDDALFLLDEMKNNAFSVDIVLYNVCIDCFGKVGKVDMAWKFFHEMKAQG 292 (895)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 292 (895)
..+.|.-.+...+.. +......|+...|..+...+.. ........++..... ...+...+..
T Consensus 173 -----~~~~g~lt~~d~w~R-~~~al~~~~~~lA~~l~~~l~~----~~~~~a~a~~al~~~---p~~~~~~~~~----- 234 (644)
T PRK11619 173 -----WQQSGKQDPLAYLER-IRLAMKAGNTGLVTYLAKQLPA----DYQTIASALIKLQND---PNTVETFART----- 234 (644)
T ss_pred -----HHHcCCCCHHHHHHH-HHHHHHCCCHHHHHHHHHhcCh----hHHHHHHHHHHHHHC---HHHHHHHhhc-----
Confidence 444332222222222 3444466666666665554411 111122223332222 2222222111
Q ss_pred CCCCHHHHH--HHHHHHHhcCCHhHHHHHHHHHhhCCCC-CC--HHhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCH
Q 002666 293 VAPDDVTYT--SMIGVLCKSKRLEEAVAMFEQMDRNREV-PC--AYAYNTMIMGYGSVGKFDEAFSLFERLKQKGCIPSV 367 (895)
Q Consensus 293 ~~p~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 367 (895)
+.|+...-. .+.-.-....+.+.|..++........- +. ...+..++......+..++|...++...... .+.
T Consensus 235 ~~~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~ 312 (644)
T PRK11619 235 TGPTDFTRQMAAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QST 312 (644)
T ss_pred cCCChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCc
Confidence 112221111 1111112344557777777776443321 11 2234444444444432556666666544332 234
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 002666 368 IAYNSLLTCLGKKGRVTEAMKIFEAMKKDARPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEAGLFPNVMTVNIMVDRLC 447 (895)
Q Consensus 368 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 447 (895)
.....-+......++++.+...+..|............-+++++...|+.++|...|+++... . ..|..+...-
T Consensus 313 ~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~---~--~fYG~LAa~~- 386 (644)
T PRK11619 313 SLLERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQ---R--GFYPMVAAQR- 386 (644)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcC---C--CcHHHHHHHH-
Confidence 444555555567888888888888776555556667777788877788888888888887431 1 2333332211
Q ss_pred hcCChhHHHHHHHHh--hhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHhcCCHHHH
Q 002666 448 KAQKLDEAFSIFEGM--DHKTCTPDAVTFCSLIDGLGKNGRVDDAYKFYEKMLDTDQIPNAILYTSLIRNFFKHGRKEDG 525 (895)
Q Consensus 448 ~~g~~~~A~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 525 (895)
.|..-. ... ... ....+. . ..-..-+..+...|....|...+..+... .+......+.....+.|.++.+
T Consensus 387 -Lg~~~~-~~~-~~~~~~~~~~~-~-~~~~~ra~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~A~~~g~~~~a 458 (644)
T PRK11619 387 -LGEEYP-LKI-DKAPKPDSALT-Q-GPEMARVRELMYWNMDNTARSEWANLVAS---RSKTEQAQLARYAFNQQWWDLS 458 (644)
T ss_pred -cCCCCC-CCC-CCCCchhhhhc-c-ChHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCHHHH
Confidence 221100 000 000 000000 0 11223455667788888888888887764 2444555666666677777777
Q ss_pred HHHHHHHHH-----cCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHH
Q 002666 526 HKIYKEMVQ-----RGCSPDLMLLNTYMDCVFKAGETEKGRALFEEIKAQGFVPDVQS 578 (895)
Q Consensus 526 ~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 578 (895)
+........ ..++ ..|...+..+.+...++.+.-.--.-.++++.|+..+
T Consensus 459 i~~~~~~~~~~~~~~rfp---~~~~~~~~~~a~~~~v~~~lv~ai~rqES~f~p~a~S 513 (644)
T PRK11619 459 VQATIAGKLWDHLEERFP---LAWNDEFRRYTSGKGIPQSYAMAIARQESAWNPKARS 513 (644)
T ss_pred HHHHhhchhHHHHHHhCC---cchHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCCCcc
Confidence 665543221 1111 1355566666665566665543333346667776554
No 239
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.31 E-value=0.18 Score=44.90 Aligned_cols=71 Identities=23% Similarity=0.340 Sum_probs=49.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----HCCCCCChhhH
Q 002666 369 AYNSLLTCLGKKGRVTEAMKIFEAMKKDARPNNTTYNVLIDMLCKAGNFEDALKFRDAMK-----EAGLFPNVMTV 439 (895)
Q Consensus 369 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~~~ 439 (895)
+...++..+...|++++|..+.+.+....|.+...|..++.+|...|+..+|.+.|+++. +.|+.|+..+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 455666777788888888888888888888888888888888888888888888887764 34777766543
No 240
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.30 E-value=2.5 Score=47.09 Aligned_cols=176 Identities=16% Similarity=0.154 Sum_probs=90.3
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHc
Q 002666 267 VCIDCFGKVGKVDMAWKFFHEMKAQGVAPDDV--TYTSMIGVLCKSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGS 344 (895)
Q Consensus 267 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 344 (895)
.-+..+++..-++-|..+-+. .+..++.. .....++-+.+.|++++|...|-+.+.. .+| ..++.-|..
T Consensus 339 ~kL~iL~kK~ly~~Ai~LAk~---~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLd 409 (933)
T KOG2114|consen 339 TKLDILFKKNLYKVAINLAKS---QHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLD 409 (933)
T ss_pred HHHHHHHHhhhHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcC
Confidence 345555566666666665433 22222222 2333444556677777777766665542 111 123445556
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 002666 345 VGKFDEAFSLFERLKQKGCIPSVIAYNSLLTCLGKKGRVTEAMKIFEAMKKDARPNNTTYNVLIDMLCKAGNFEDALKFR 424 (895)
Q Consensus 345 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 424 (895)
...+.+-..+++.+.+.|.. +...-..|+.+|.+.++.+.-.+..+...++.- ..-....+..+.+.+-.++|..+-
T Consensus 410 aq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~--~fd~e~al~Ilr~snyl~~a~~LA 486 (933)
T KOG2114|consen 410 AQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEW--FFDVETALEILRKSNYLDEAELLA 486 (933)
T ss_pred HHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCCCcce--eeeHHHHHHHHHHhChHHHHHHHH
Confidence 66666666777777777654 445556677777777777665555443331100 001233444455555555555544
Q ss_pred HHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHh
Q 002666 425 DAMKEAGLFPNVMTVNIMVDRLCKAQKLDEAFSIFEGM 462 (895)
Q Consensus 425 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 462 (895)
.+... +... +--.+...+++++|++.+..+
T Consensus 487 ~k~~~-----he~v---l~ille~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 487 TKFKK-----HEWV---LDILLEDLHNYEEALRYISSL 516 (933)
T ss_pred HHhcc-----CHHH---HHHHHHHhcCHHHHHHHHhcC
Confidence 43322 1111 122234456677777776654
No 241
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.25 E-value=0.096 Score=43.22 Aligned_cols=91 Identities=14% Similarity=0.085 Sum_probs=56.4
Q ss_pred HHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCC--HHHHHHHHHHHHhcCC
Q 002666 760 GLCRVRKFNKAFVFWQEMQKQGFKPNTITYTTMISGLAKAGNITEANGLFERFKEN-GGVPD--SACYNAMMEGLSNANR 836 (895)
Q Consensus 760 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~--~~~~~~l~~~~~~~g~ 836 (895)
++...|+.+.|++.|.+.+.. .+-....||.-..++.-+|+.++|+.-+++.++. |-.-. ...|..-+..|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 455667777777777776653 2334566777777777777777777777777663 11111 2234444445666777
Q ss_pred HHHHHHHHHHHHHCC
Q 002666 837 AMDAYTLFEETRRKG 851 (895)
Q Consensus 837 ~~~A~~~~~~~~~~~ 851 (895)
-++|+.-|+.+.+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 777777777777766
No 242
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.24 E-value=0.32 Score=48.02 Aligned_cols=156 Identities=10% Similarity=0.073 Sum_probs=76.9
Q ss_pred hcCChhHHHHHHHHHHHc--CCCcCHHHHHHHHHHHHhcCChhHHHHHHHHH----HhCC-CCCChHhHHHHHHHHHhcC
Q 002666 204 TVRESNLMLNLFHQMQEL--GYEVSVHLFTTLIRVFAREGRVDDALFLLDEM----KNNA-FSVDIVLYNVCIDCFGKVG 276 (895)
Q Consensus 204 ~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~-~~~~~~~~~~l~~~~~~~g 276 (895)
...++++|+..|.+.+.. +......++..+..+.++.|.+++++..--.. .+.. -..-...|..+.+++-+.-
T Consensus 18 ~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~ 97 (518)
T KOG1941|consen 18 QSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLC 97 (518)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555554432 01112234455556666666666654432211 1110 0001223444555555555
Q ss_pred ChhhHHHHHHHHHHC-CCCCC---HHHHHHHHHHHHhcCCHhHHHHHHHHHhhCC-----CCCCHHhHHHHHHHHHccCC
Q 002666 277 KVDMAWKFFHEMKAQ-GVAPD---DVTYTSMIGVLCKSKRLEEAVAMFEQMDRNR-----EVPCAYAYNTMIMGYGSVGK 347 (895)
Q Consensus 277 ~~~~A~~~~~~~~~~-g~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~ 347 (895)
++.+++.+-+.-... |..|. -....++..++...+.++++++.|+...+.- +...-.+|..|...|.+..|
T Consensus 98 ~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D 177 (518)
T KOG1941|consen 98 EFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKD 177 (518)
T ss_pred HhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHh
Confidence 555555554443332 22221 1123345566666777777777777765421 11223466777777777777
Q ss_pred HHHHHHHHHHHH
Q 002666 348 FDEAFSLFERLK 359 (895)
Q Consensus 348 ~~~A~~~~~~~~ 359 (895)
+++|.-+..+..
T Consensus 178 ~~Kal~f~~kA~ 189 (518)
T KOG1941|consen 178 YEKALFFPCKAA 189 (518)
T ss_pred hhHHhhhhHhHH
Confidence 777766655544
No 243
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.22 E-value=2.6 Score=46.41 Aligned_cols=110 Identities=17% Similarity=0.186 Sum_probs=72.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 002666 369 AYNSLLTCLGKKGRVTEAMKIFEAMKKDARPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEAGLFPNVMTVNIMVDRLCK 448 (895)
Q Consensus 369 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 448 (895)
+.+--+..+...|+..+|.++-.+.+ -|+...|-.-+.++...++|++-+++-+.+. .+.-|..+...|.+
T Consensus 686 Sl~dTv~~li~~g~~k~a~ql~~~Fk---ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~ 756 (829)
T KOG2280|consen 686 SLHDTVTTLILIGQNKRAEQLKSDFK---IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLK 756 (829)
T ss_pred cHHHHHHHHHHccchHHHHHHHHhcC---CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHh
Confidence 33444445556677777777665543 4566677777777888888877776655543 24456667778888
Q ss_pred cCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHH
Q 002666 449 AQKLDEAFSIFEGMDHKTCTPDAVTFCSLIDGLGKNGRVDDAYKFYEK 496 (895)
Q Consensus 449 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 496 (895)
.|+.++|...+.+.... . -...+|.+.|++.+|.+.--+
T Consensus 757 ~~n~~EA~KYiprv~~l-----~----ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 757 QGNKDEAKKYIPRVGGL-----Q----EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred cccHHHHhhhhhccCCh-----H----HHHHHHHHhccHHHHHHHHHH
Confidence 88888888877654322 1 456677777888777765544
No 244
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=96.20 E-value=1.1 Score=51.80 Aligned_cols=100 Identities=19% Similarity=0.292 Sum_probs=45.5
Q ss_pred cCCHhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 002666 310 SKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLFERLKQKGCIPSVIAYNSLLTCLGKKGRVTEAMKI 389 (895)
Q Consensus 310 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 389 (895)
.|+|+.|+.-+.++-. ..|.-....-.+.|.+.+|+.++.-=.+. ....|...+..+...+.+++|.-.
T Consensus 893 L~ry~~AL~hLs~~~~-------~~~~e~~n~I~kh~Ly~~aL~ly~~~~e~----~k~i~~~ya~hL~~~~~~~~Aal~ 961 (1265)
T KOG1920|consen 893 LKRYEDALSHLSECGE-------TYFPECKNYIKKHGLYDEALALYKPDSEK----QKVIYEAYADHLREELMSDEAALM 961 (1265)
T ss_pred HHHHHHHHHHHHHcCc-------cccHHHHHHHHhcccchhhhheeccCHHH----HHHHHHHHHHHHHHhccccHHHHH
Confidence 4566666666655431 12222223333555566665554321111 122333444444455555555555
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002666 390 FEAMKKDARPNNTTYNVLIDMLCKAGNFEDALKFRDAMK 428 (895)
Q Consensus 390 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 428 (895)
|+..-+ ....+.+|..+|+|.+|+.+..++.
T Consensus 962 Ye~~Gk--------lekAl~a~~~~~dWr~~l~~a~ql~ 992 (1265)
T KOG1920|consen 962 YERCGK--------LEKALKAYKECGDWREALSLAAQLS 992 (1265)
T ss_pred HHHhcc--------HHHHHHHHHHhccHHHHHHHHHhhc
Confidence 544322 2223444445555655555555443
No 245
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.19 E-value=0.64 Score=45.10 Aligned_cols=144 Identities=13% Similarity=0.073 Sum_probs=78.8
Q ss_pred HHHhcCCHhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 002666 306 VLCKSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLFERLKQKGCIPSVIAYNSLLTCLGKKGRVTE 385 (895)
Q Consensus 306 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 385 (895)
.....|++.+|...|+......+. +...-..++.+|...|+.+.|..++..+....-.........-+..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 455677777777777777766655 4556666777777777777777777766543211111111112223333322222
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCChhhHHHHHHHHHhcCC
Q 002666 386 AMKIFEAMKKDARPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEAGL-FPNVMTVNIMVDRLCKAQK 451 (895)
Q Consensus 386 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~ 451 (895)
...+-.. ....|.|...-..++..+...|+.++|.+.+-.++..+. ..|...-..++..+.-.|.
T Consensus 222 ~~~l~~~-~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~ 287 (304)
T COG3118 222 IQDLQRR-LAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGP 287 (304)
T ss_pred HHHHHHH-HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCC
Confidence 2222221 224566777777777777777888887776655554321 1233444455555544443
No 246
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.15 E-value=3.1 Score=46.61 Aligned_cols=195 Identities=10% Similarity=0.121 Sum_probs=91.2
Q ss_pred CHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHc-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----hcCCHHHH
Q 002666 661 RLDEAYMLFEEAKSKGIELNTVIYSSLIDGFGK-VGRIDEAYLIMEELMQKGLTPNAYTWNCLLDALV----KAEEISEA 735 (895)
Q Consensus 661 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~----~~g~~~~A 735 (895)
+.+.|..++.+..+.| .|+.......+..... ..++..|.++|..+.+.|.. .....+..+|. ...+...|
T Consensus 308 d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~~G~gv~r~~~~A 383 (552)
T KOG1550|consen 308 DYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYELGLGVERNLELA 383 (552)
T ss_pred cHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhCCCcCCCHHHH
Confidence 4556666666666665 2333332222211111 13456677777766665532 22222332222 12356677
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHH---Hh----cCCHHHHHHH
Q 002666 736 FVCFQSMKDLKCTPNHVTYSIIINGLCRVRKFNKAFVFWQEMQKQGFKPNTITYTTMISGL---AK----AGNITEANGL 808 (895)
Q Consensus 736 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~---~~----~g~~~~A~~~ 808 (895)
..++.+..+.+ .|...--...+..+.. ++++.+.-.+..+.+.|.+.....-..++... .. ..+.+.+...
T Consensus 384 ~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~ 461 (552)
T KOG1550|consen 384 FAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSL 461 (552)
T ss_pred HHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccchhHHHHH
Confidence 77777776655 2221111112222222 56666665555555544332211111111111 00 1244555555
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh
Q 002666 809 FERFKENGGVPDSACYNAMMEGLSNA----NRAMDAYTLFEETRRKGFNIHTKTCVILLDALHK 868 (895)
Q Consensus 809 ~~~~~~~~~~p~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 868 (895)
+.+....| +......|...|+.- .+++.|...|......+ ....+.|+.++-.
T Consensus 462 ~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~----~~~~~nlg~~~e~ 518 (552)
T KOG1550|consen 462 YSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG----AQALFNLGYMHEH 518 (552)
T ss_pred HHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh----hHHHhhhhhHHhc
Confidence 55555432 445555555555442 24667777777766654 5666666666644
No 247
>PRK11906 transcriptional regulator; Provisional
Probab=96.14 E-value=0.37 Score=50.20 Aligned_cols=116 Identities=13% Similarity=0.080 Sum_probs=72.4
Q ss_pred HhHHHHHHHHHh---hCCCCCCHHhHHHHHHHHHc---------cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 002666 313 LEEAVAMFEQMD---RNREVPCAYAYNTMIMGYGS---------VGKFDEAFSLFERLKQKGCIPSVIAYNSLLTCLGKK 380 (895)
Q Consensus 313 ~~~A~~~~~~~~---~~~~~~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 380 (895)
.+.|+.+|.+.+ ..++. ...+|..+..++.. ..+..+|.++-++.++.+. .|..+...++.+..-.
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~-~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~-~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTL-KTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITT-VDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHhhcccCCcc-cHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhh
Confidence 456666677766 43332 34444444333221 2345566666666666653 3666666666666666
Q ss_pred CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 002666 381 GRVTEAMKIFEAMKKDARPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEA 430 (895)
Q Consensus 381 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 430 (895)
++++.|...|++.....|....+|........-.|+.++|.+.+++..+.
T Consensus 352 ~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL 401 (458)
T PRK11906 352 GQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQL 401 (458)
T ss_pred cchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 77777777777777777777777777777777777777777777776653
No 248
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.12 E-value=0.13 Score=53.25 Aligned_cols=62 Identities=15% Similarity=-0.007 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCCH---HhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 002666 298 VTYTSMIGVLCKSKRLEEAVAMFEQMDRNREVPCA---YAYNTMIMGYGSVGKFDEAFSLFERLKQ 360 (895)
Q Consensus 298 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 360 (895)
..++.++.+|...|++++|+..|++.++.++. +. .+|..++.+|...|++++|+..++++++
T Consensus 76 ~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd-~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 76 EDAVNLGLSLFSKGRVKDALAQFETALELNPN-PDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444444444555555555555544444333 11 2344445555555555555555554444
No 249
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=96.11 E-value=3.5 Score=46.97 Aligned_cols=186 Identities=17% Similarity=0.139 Sum_probs=93.4
Q ss_pred HHHHHHHHHhhhcCCCCCCHH--HHHHHHHHHH-ccCCcchHHHHHHHHHHcCCCCCh-----hhHHHHHHHHHhcCChH
Q 002666 103 NLAINYFRWVERKTDQAHSLE--AYNSLLMVMA-VSKNFEPLEEILGEMSLAGIGPTN-----NTCIELVVSCVKSKMLR 174 (895)
Q Consensus 103 ~~a~~~f~~~~~~~~~~~~~~--~~~~l~~~l~-~~~~~~~a~~~l~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~ 174 (895)
..|++-++.+.++...++..+ ++..++.+|. ...+++.|+..+++.......++. .....++..+.+.+...
T Consensus 38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~ 117 (608)
T PF10345_consen 38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA 117 (608)
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH
Confidence 356666666665443333322 5777777777 577888888888876443222221 12234444454444444
Q ss_pred HHHHHHHHHHhCCCC----cCHHHHHHH-HHHHHhcCChhHHHHHHHHHHHcC---CCcCHHHHHHHHHHH--HhcCChh
Q 002666 175 EAFDIIQTMRKFKFR----PAFTAYTTL-IGALATVRESNLMLNLFHQMQELG---YEVSVHLFTTLIRVF--AREGRVD 244 (895)
Q Consensus 175 ~A~~~~~~~~~~~~~----~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~--~~~g~~~ 244 (895)
|...+++.++.--. +-...+..+ +..+...+++..|.+.++.+.... ..+...++..++.+. .+.+..+
T Consensus 118 -a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~ 196 (608)
T PF10345_consen 118 -ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPD 196 (608)
T ss_pred -HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCch
Confidence 77777665543111 112222222 222222367777777777665532 223333343443332 3455566
Q ss_pred HHHHHHHHHHhCCC---------CCChHhHHHHHHHHH--hcCChhhHHHHHHHHH
Q 002666 245 DALFLLDEMKNNAF---------SVDIVLYNVCIDCFG--KVGKVDMAWKFFHEMK 289 (895)
Q Consensus 245 ~A~~~~~~~~~~~~---------~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~ 289 (895)
++.+.++++..... .|-..+|..+++.++ ..|+++.+.+.++++.
T Consensus 197 d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 197 DVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred hHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 66666666532111 223445555555443 4566556655555443
No 250
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.09 E-value=0.015 Score=38.84 Aligned_cols=40 Identities=10% Similarity=0.056 Sum_probs=23.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHH
Q 002666 823 CYNAMMEGLSNANRAMDAYTLFEETRRKGFNIHTKTCVILL 863 (895)
Q Consensus 823 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 863 (895)
++..++..|...|++++|+++|+++++.. |.+...+..|+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~-P~~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALD-PDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCCHHHHHHhh
Confidence 45556666666666666666666666652 55555555544
No 251
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.07 E-value=0.031 Score=57.68 Aligned_cols=98 Identities=13% Similarity=0.097 Sum_probs=69.9
Q ss_pred CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 002666 749 PNHVTYSIIINGLCRVRKFNKAFVFWQEMQKQGFKPNT----ITYTTMISGLAKAGNITEANGLFERFKENGGVPDSACY 824 (895)
Q Consensus 749 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 824 (895)
.+...++.+..+|...|++++|+..|++.++ +.|+. .+|.++..+|...|++++|+..++++++.+ .| .|
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALe--L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels-n~---~f 146 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALE--LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY-NL---KF 146 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-ch---hH
Confidence 3557788999999999999999999999887 56764 358999999999999999999999999841 22 22
Q ss_pred HHHHH--HHHhcCCHHHHHHHHHHHHHCCC
Q 002666 825 NAMME--GLSNANRAMDAYTLFEETRRKGF 852 (895)
Q Consensus 825 ~~l~~--~~~~~g~~~~A~~~~~~~~~~~~ 852 (895)
..+.. .+....+.++..++++.+..-|.
T Consensus 147 ~~i~~DpdL~plR~~pef~eLlee~rk~G~ 176 (453)
T PLN03098 147 STILNDPDLAPFRASPEFKELQEEARKGGE 176 (453)
T ss_pred HHHHhCcchhhhcccHHHHHHHHHHHHhCC
Confidence 21111 11122234466677777776664
No 252
>PRK11906 transcriptional regulator; Provisional
Probab=96.02 E-value=0.41 Score=49.89 Aligned_cols=81 Identities=16% Similarity=0.071 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHH
Q 002666 419 DALKFRDAMKEAGLFPNVMTVNIMVDRLCKAQKLDEAFSIFEGMDHKTCTPDAVTFCSLIDGLGKNGRVDDAYKFYEKML 498 (895)
Q Consensus 419 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 498 (895)
+|.++.++..+.+ +.|......+...+...++++.|..+|++....+ +..+.+|...+....-.|+.++|.+.+++.+
T Consensus 322 ~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~al 399 (458)
T PRK11906 322 KALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDKSL 399 (458)
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 3444444444433 1234444444444444444555555555444432 1123334444444444555555555555555
Q ss_pred hCC
Q 002666 499 DTD 501 (895)
Q Consensus 499 ~~~ 501 (895)
+..
T Consensus 400 rLs 402 (458)
T PRK11906 400 QLE 402 (458)
T ss_pred ccC
Confidence 443
No 253
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.01 E-value=0.68 Score=48.31 Aligned_cols=177 Identities=15% Similarity=0.126 Sum_probs=92.6
Q ss_pred ccCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHH
Q 002666 623 KSGKVNKAYQLLEEMKTKGHYPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNTVIYSSLIDGFGKVGRIDEAYL 702 (895)
Q Consensus 623 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 702 (895)
+..+.+.-++.-.+.++. .|+..+...++ +-.......+|.++++++.+.|- ..+..- ......|.
T Consensus 180 RERnp~aRIkaA~eALei--~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkAgE----~~lg~s-~~~~~~g~------ 245 (539)
T PF04184_consen 180 RERNPQARIKAAKEALEI--NPDCADAYILL-AEEEASTIVEAEELLRQAVKAGE----ASLGKS-QFLQHHGH------ 245 (539)
T ss_pred hcCCHHHHHHHHHHHHHh--hhhhhHHHhhc-ccccccCHHHHHHHHHHHHHHHH----Hhhchh-hhhhcccc------
Confidence 334455555555555544 33333222111 12234557888888888776541 011000 00011111
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCC
Q 002666 703 IMEELMQKGLTPNAYTWNCLLDALVKAEEISEAFVCFQSMKDLKCT-PNHVTYSIIINGLCRVRKFNKAFVFWQEMQKQG 781 (895)
Q Consensus 703 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 781 (895)
.++........|-..+-..|..++.+.|+.++|++.++++.+.... .+......|+.++...+.+.++..++.+.-+..
T Consensus 246 ~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~ 325 (539)
T PF04184_consen 246 FWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDIS 325 (539)
T ss_pred hhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcccc
Confidence 1122222222233444455777788888889999988888864322 123455678888888888888888888865432
Q ss_pred CCCCH--HHHHHHHHHHHhcCC---------------HHHHHHHHHHHHH
Q 002666 782 FKPNT--ITYTTMISGLAKAGN---------------ITEANGLFERFKE 814 (895)
Q Consensus 782 ~~p~~--~~~~~l~~~~~~~g~---------------~~~A~~~~~~~~~ 814 (895)
.|.. ..|+..+-.....|+ -..|++.+.++.+
T Consensus 326 -lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAve 374 (539)
T PF04184_consen 326 -LPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVE 374 (539)
T ss_pred -CCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHH
Confidence 2332 344443333332332 1235677777777
No 254
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=95.94 E-value=1.2 Score=40.77 Aligned_cols=181 Identities=13% Similarity=0.046 Sum_probs=83.0
Q ss_pred hcCChhHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHH
Q 002666 239 REGRVDDALFLLDEMKNNAFSVDIVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGVAPDDVTYTSMIGVLCKSKRLEEAVA 318 (895)
Q Consensus 239 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~ 318 (895)
..|-..-|+-=|.+.+... +.-..+||.++--+...|+++.|.+.|+...+.++.-+ .+...-+-.+.--|++.-|.+
T Consensus 77 SlGL~~LAR~DftQaLai~-P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~-Ya~lNRgi~~YY~gR~~LAq~ 154 (297)
T COG4785 77 SLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN-YAHLNRGIALYYGGRYKLAQD 154 (297)
T ss_pred hhhHHHHHhhhhhhhhhcC-CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcch-HHHhccceeeeecCchHhhHH
Confidence 3344444444444444432 22345566666666777777777777777766532211 122222223345667777766
Q ss_pred HHHHHhhCCCC-CCHHhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCC
Q 002666 319 MFEQMDRNREV-PCAYAYNTMIMGYGSVGKFDEAFSLFERLKQKGCIPSVIAYNSLLTCLGKKGRVTEAMKIFEAMKKDA 397 (895)
Q Consensus 319 ~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 397 (895)
-|.+.-+.++. |-...|.-+.. ..-++.+|..-+.+--+. .|..-|...|-.+.- |++. ...+++.+....
T Consensus 155 d~~~fYQ~D~~DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~~---~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~a 226 (297)
T COG4785 155 DLLAFYQDDPNDPFRSLWLYLNE---QKLDPKQAKTNLKQRAEK---SDKEQWGWNIVEFYL-GKIS-EETLMERLKADA 226 (297)
T ss_pred HHHHHHhcCCCChHHHHHHHHHH---hhCCHHHHHHHHHHHHHh---ccHhhhhHHHHHHHH-hhcc-HHHHHHHHHhhc
Confidence 66655544432 22333333332 223444444433322221 133333332222211 1111 112233333222
Q ss_pred CCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002666 398 RPN-------NTTYNVLIDMLCKAGNFEDALKFRDAMKE 429 (895)
Q Consensus 398 ~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 429 (895)
..+ +.+|..++..+...|+.++|..+|+-...
T Consensus 227 ~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaia 265 (297)
T COG4785 227 TDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVA 265 (297)
T ss_pred cchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 221 23566666666666666666666666554
No 255
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.75 E-value=0.22 Score=48.47 Aligned_cols=151 Identities=11% Similarity=0.005 Sum_probs=93.6
Q ss_pred HccCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHH----HHHHHHHHHHccCCH
Q 002666 622 CKSGKVNKAYQLLEEMKTKGHYPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNTV----IYSSLIDGFGKVGRI 697 (895)
Q Consensus 622 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~ 697 (895)
...|+..+|...++++++. .+-|...+.-.-.++...|+.+.-...++++... ..++.. .-..+..++...|-+
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 4567777777778877765 2335666666667777788877777777777654 123332 223344556677888
Q ss_pred HHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC----CHHHHHHHHHHHHhcCCHhHHHH
Q 002666 698 DEAYLIMEELMQKGLTP-NAYTWNCLLDALVKAEEISEAFVCFQSMKDLKCTP----NHVTYSIIINGLCRVRKFNKAFV 772 (895)
Q Consensus 698 ~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~ 772 (895)
++|.+.-++..+. .+ |.-+-.++...+...|+.+++.+...+-... ..- -...|--..-.+.+.+.++.|++
T Consensus 192 ~dAEk~A~ralqi--N~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~-Wr~s~mlasHNyWH~Al~~iE~aeye~ale 268 (491)
T KOG2610|consen 192 DDAEKQADRALQI--NRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDD-WRQSWMLASHNYWHTALFHIEGAEYEKALE 268 (491)
T ss_pred hhHHHHHHhhccC--CCcchHHHHHHHHHHHhcchhhhHHHHHHhcccc-hhhhhHHHhhhhHHHHHhhhcccchhHHHH
Confidence 8888888877773 33 5555566666777778888888776654431 110 01122223334556678888888
Q ss_pred HHHHH
Q 002666 773 FWQEM 777 (895)
Q Consensus 773 ~~~~~ 777 (895)
+|+.-
T Consensus 269 IyD~e 273 (491)
T KOG2610|consen 269 IYDRE 273 (491)
T ss_pred HHHHH
Confidence 88743
No 256
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.71 E-value=0.7 Score=50.27 Aligned_cols=118 Identities=18% Similarity=0.215 Sum_probs=75.1
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHhcC--C-CCCHHHHHHHHHHHHhcCCHhH
Q 002666 694 VGRIDEAYLIMEELMQKGLTPNAYTWN-CLLDALVKAEEISEAFVCFQSMKDLK--C-TPNHVTYSIIINGLCRVRKFNK 769 (895)
Q Consensus 694 ~g~~~~A~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~--~-~p~~~~~~~l~~~~~~~g~~~~ 769 (895)
..+.+.|.++++.+.+. -|+...|. .-++.+...|++++|++.|++..... . ......+.-+++++....+|++
T Consensus 246 ~~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~ 323 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEE 323 (468)
T ss_pred CCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHH
Confidence 45677788888887773 35544443 34566677888888888888765311 1 1122344456777788888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCH-------HHHHHHHHHHHH
Q 002666 770 AFVFWQEMQKQGFKPNTITYTTMISG-LAKAGNI-------TEANGLFERFKE 814 (895)
Q Consensus 770 A~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~-------~~A~~~~~~~~~ 814 (895)
|.+.+..+.+.+ ..+..+|..+..+ +...|+. ++|.+++.++..
T Consensus 324 A~~~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 324 AAEYFLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 888888888752 3344455544443 5566777 777777777643
No 257
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=95.71 E-value=5.2 Score=45.65 Aligned_cols=182 Identities=12% Similarity=0.113 Sum_probs=88.6
Q ss_pred HHHHHHHHHH-cCCCcC--HHHHHHHHHHHH-hcCChhHHHHHHHHHHhCCCCCCh-----HhHHHHHHHHHhcCChhhH
Q 002666 211 MLNLFHQMQE-LGYEVS--VHLFTTLIRVFA-REGRVDDALFLLDEMKNNAFSVDI-----VLYNVCIDCFGKVGKVDMA 281 (895)
Q Consensus 211 a~~~~~~~~~-~~~~~~--~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A 281 (895)
|+.+++-+.+ ...+|. ..+...++..+. ...+++.|...+++.....-.++. .....++..+.+.+... |
T Consensus 40 ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a 118 (608)
T PF10345_consen 40 AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-A 118 (608)
T ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-H
Confidence 4555555552 222222 234555566655 556777777777766433212211 11234455565555555 7
Q ss_pred HHHHHHHHHC--C--CCCCHHHHHHH-HHHHHhcCCHhHHHHHHHHHhhCC---CCCCHHhHHHHHHH--HHccCCHHHH
Q 002666 282 WKFFHEMKAQ--G--VAPDDVTYTSM-IGVLCKSKRLEEAVAMFEQMDRNR---EVPCAYAYNTMIMG--YGSVGKFDEA 351 (895)
Q Consensus 282 ~~~~~~~~~~--g--~~p~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~--~~~~g~~~~A 351 (895)
...+++.++. + ..+-...+..+ +..+...+++..|.+.++.+.... ..|...++..+..+ ..+.+..+++
T Consensus 119 ~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~ 198 (608)
T PF10345_consen 119 LKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDV 198 (608)
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhH
Confidence 7777666553 1 11112223323 222223367777777777765432 22333444444433 3345556666
Q ss_pred HHHHHHHHhcCC---------CCCHHHHHHHHHHHH--hcCCHHHHHHHHHHH
Q 002666 352 FSLFERLKQKGC---------IPSVIAYNSLLTCLG--KKGRVTEAMKIFEAM 393 (895)
Q Consensus 352 ~~~~~~~~~~~~---------~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~ 393 (895)
.+.++++..... .|...++..++..++ ..|++..+.+.++++
T Consensus 199 ~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 199 LELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 666665533211 223445555555443 556666666665544
No 258
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.70 E-value=0.15 Score=42.15 Aligned_cols=92 Identities=18% Similarity=0.052 Sum_probs=60.8
Q ss_pred HHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChh---hHHHHHHHHHhcCC
Q 002666 375 TCLGKKGRVTEAMKIFEAMKKDARPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEAGLFPNVM---TVNIMVDRLCKAQK 451 (895)
Q Consensus 375 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~ 451 (895)
-++...|+.+.|++.|.+.....|.+..+||.-+.++.-.|+.++|++-+++.++..-..... .|..-...|...|+
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 356677888888888888888888888888888888888888888888888877642111111 12222233444555
Q ss_pred hhHHHHHHHHhhhCC
Q 002666 452 LDEAFSIFEGMDHKT 466 (895)
Q Consensus 452 ~~~A~~~~~~~~~~~ 466 (895)
.+.|..-|+...+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 566665555554443
No 259
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.60 E-value=0.38 Score=41.37 Aligned_cols=59 Identities=15% Similarity=0.097 Sum_probs=30.6
Q ss_pred HHHhcCChhhHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCC
Q 002666 271 CFGKVGKVDMAWKFFHEMKAQGVA--PDDVTYTSMIGVLCKSKRLEEAVAMFEQMDRNREV 329 (895)
Q Consensus 271 ~~~~~g~~~~A~~~~~~~~~~g~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 329 (895)
...+.|++++|.+.|+.+...-+. -...+...|+.+|.+.|++++|+..+++.++..|.
T Consensus 19 ~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~ 79 (142)
T PF13512_consen 19 EALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPT 79 (142)
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 334556666666666665554111 11223444555566666666666666665555544
No 260
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.59 E-value=1.5 Score=38.66 Aligned_cols=128 Identities=13% Similarity=0.131 Sum_probs=69.0
Q ss_pred HccCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHH-HH--HHHHHHHHhcCCH
Q 002666 692 GKVGRIDEAYLIMEELMQKGLTPNAYT-WNCLLDALVKAEEISEAFVCFQSMKDLKCTPNHV-TY--SIIINGLCRVRKF 767 (895)
Q Consensus 692 ~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~--~~l~~~~~~~g~~ 767 (895)
.+.+..++|+..|..+.+.|...-++. ..-........|+...|+..|.++-.....|-.. -. ..-...+...|.|
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 445666777777777766554432221 1122334455677777777777766543333221 11 1122334556677
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 002666 768 NKAFVFWQEMQKQGFKPNTITYTTMISGLAKAGNITEANGLFERFKENGGVP 819 (895)
Q Consensus 768 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 819 (895)
++.....+.+...+-+.....-..|.-+-.+.|++.+|.+.|..+......|
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 7766666655543322233444556666667777777777777776644444
No 261
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.54 E-value=0.029 Score=37.39 Aligned_cols=40 Identities=15% Similarity=0.213 Sum_probs=25.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 002666 369 AYNSLLTCLGKKGRVTEAMKIFEAMKKDARPNNTTYNVLI 408 (895)
Q Consensus 369 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 408 (895)
++..+...|...|++++|+++|+++.+..|.|..++..++
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 4555666666666666666666666666666666665554
No 262
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.39 E-value=3.4 Score=41.52 Aligned_cols=103 Identities=9% Similarity=0.059 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHhcCChh---HHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHhHHHHH
Q 002666 193 TAYTTLIGALATVRESN---LMLNLFHQMQELGYEVSVHLFTTLIRVFAREGRVDDALFLLDEMKNNAFSVDIVLYNVCI 269 (895)
Q Consensus 193 ~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 269 (895)
.++..++.+|...+.++ +|..+.+.+... ++..+.++..-+.++.+.++.+++.+.+.+|...- ......+..++
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l 162 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHHH
Confidence 34555566666655443 344455555332 22234445455555556677777777777776542 11223333333
Q ss_pred HHHH--hcCChhhHHHHHHHHHHCCCCCCH
Q 002666 270 DCFG--KVGKVDMAWKFFHEMKAQGVAPDD 297 (895)
Q Consensus 270 ~~~~--~~g~~~~A~~~~~~~~~~g~~p~~ 297 (895)
+.+. .......|...+..++...+.|..
T Consensus 163 ~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 163 HHIKQLAEKSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHHhhCcHHHHHHHHHHHHHHhCCCh
Confidence 3331 122334555555555544344443
No 263
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=95.38 E-value=4.3 Score=42.58 Aligned_cols=175 Identities=10% Similarity=0.086 Sum_probs=84.6
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 002666 680 NTVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNAYTWNCLLDALVKAEEISEAFVCFQSMKDLKCTPNHVTYSIIIN 759 (895)
Q Consensus 680 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 759 (895)
|-....+++..+....++.-...+..+++.. ..+-..|..++.+|... ..+.-..+++++.+..+ .|...-..|+.
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~--~e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEY--GESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHh--cchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHHHH
Confidence 3444455556665555555566666666663 24555566666666655 33555556666655331 12222223333
Q ss_pred HHHhcCCHhHHHHHHHHHHHCCCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHH
Q 002666 760 GLCRVRKFNKAFVFWQEMQKQGFKPN------TITYTTMISGLAKAGNITEANGLFERFKEN-GGVPDSACYNAMMEGLS 832 (895)
Q Consensus 760 ~~~~~g~~~~A~~~~~~~~~~~~~p~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~ 832 (895)
.|.+ ++.+.+..+|.++... +.|. ...|..|... -..+.+.-..+..++.+. |..--...+..+-.-|.
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yr-fI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYR-FIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHH-hcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 3333 5556666666666543 2221 1244444432 124555555555555442 21112333334444455
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHhhHHHHH
Q 002666 833 NANRAMDAYTLFEETRRKGFNIHTKTCVILL 863 (895)
Q Consensus 833 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 863 (895)
...++.+|++++..+++.. ..+..+...++
T Consensus 217 ~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i 246 (711)
T COG1747 217 ENENWTEAIRILKHILEHD-EKDVWARKEII 246 (711)
T ss_pred cccCHHHHHHHHHHHhhhc-chhhhHHHHHH
Confidence 5566666666666665553 34444333333
No 264
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.36 E-value=1.5 Score=46.03 Aligned_cols=58 Identities=10% Similarity=0.190 Sum_probs=28.7
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002666 756 IIINGLCRVRKFNKAFVFWQEMQKQG-FKPNTITYTTMISGLAKAGNITEANGLFERFK 813 (895)
Q Consensus 756 ~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 813 (895)
.+..++-+.|+.++|++.+.+|.+.. ...+..+...|+.++...+.+.++..++.+-.
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 34444555555555555555554321 01112345555555555555555555555543
No 265
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.35 E-value=0.19 Score=45.12 Aligned_cols=104 Identities=13% Similarity=0.083 Sum_probs=78.5
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHH
Q 002666 757 IINGLCRVRKFNKAFVFWQEMQKQGFKPN-----TITYTTMISGLAKAGNITEANGLFERFKENGGVP-DSACYNAMMEG 830 (895)
Q Consensus 757 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~ 830 (895)
-.+-+...|+|++|..-|..+++. +++. ...|..-..++.+.+.++.|+.-..+.++ +.| ...+...-+.+
T Consensus 101 EGN~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaie--l~pty~kAl~RRAea 177 (271)
T KOG4234|consen 101 EGNELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIE--LNPTYEKALERRAEA 177 (271)
T ss_pred HHHHhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHh--cCchhHHHHHHHHHH
Confidence 356678899999999999999985 2332 34566667778899999999999999998 666 34555566778
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 002666 831 LSNANRAMDAYTLFEETRRKGFNIHTKTCVILLD 864 (895)
Q Consensus 831 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 864 (895)
|.+..++++|+.-|.++++.. |....+...+++
T Consensus 178 yek~ek~eealeDyKki~E~d-Ps~~ear~~i~r 210 (271)
T KOG4234|consen 178 YEKMEKYEEALEDYKKILESD-PSRREAREAIAR 210 (271)
T ss_pred HHhhhhHHHHHHHHHHHHHhC-cchHHHHHHHHh
Confidence 999999999999999999884 444444444443
No 266
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=95.28 E-value=4 Score=41.62 Aligned_cols=102 Identities=19% Similarity=0.212 Sum_probs=48.4
Q ss_pred HHHHHccCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCH
Q 002666 618 VDGFCKSGKVNKAYQLLEEMKTKGHYPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNTVIYSSLIDGFGKVGRI 697 (895)
Q Consensus 618 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 697 (895)
+.-+...|+...|.++-.+.. .|+...|-..+.+++..++|++-..+-.. .-++.-|...+..|.+.|+.
T Consensus 184 i~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~ 253 (319)
T PF04840_consen 184 IRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNK 253 (319)
T ss_pred HHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCH
Confidence 344444555555554443331 24555555555555555555554443211 11234455555555555555
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 002666 698 DEAYLIMEELMQKGLTPNAYTWNCLLDALVKAEEISEAFVCF 739 (895)
Q Consensus 698 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 739 (895)
.+|..+..++ + + ..-+..|.+.|++.+|.+..
T Consensus 254 ~eA~~yI~k~-----~-~----~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 254 KEASKYIPKI-----P-D----EERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred HHHHHHHHhC-----C-h----HHHHHHHHHCCCHHHHHHHH
Confidence 5555555441 1 1 23344455555555555443
No 267
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.27 E-value=8.2 Score=45.19 Aligned_cols=21 Identities=14% Similarity=0.249 Sum_probs=12.5
Q ss_pred HHHHHHHhcCChhHHHHHHHH
Q 002666 232 TLIRVFAREGRVDDALFLLDE 252 (895)
Q Consensus 232 ~l~~~~~~~g~~~~A~~~~~~ 252 (895)
.-++-++..+++.+|+++.++
T Consensus 682 a~vr~~l~~~~y~~AF~~~Rk 702 (1265)
T KOG1920|consen 682 AKVRTLLDRLRYKEAFEVMRK 702 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555666677776666544
No 268
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.26 E-value=3.8 Score=41.22 Aligned_cols=163 Identities=12% Similarity=0.076 Sum_probs=76.5
Q ss_pred HHHHHHHHHHccCCHH---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 002666 683 IYSSLIDGFGKVGRID---EAYLIMEELMQKGLTPNAYTWNCLLDALVKAEEISEAFVCFQSMKDLKCTPNHVTYSIIIN 759 (895)
Q Consensus 683 ~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 759 (895)
++..++.+|...+..+ +|..+.+.+.... +..+..+..-+..+.+.++.+++.+.+.+|+..- .-....+...+.
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l~ 163 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSILH 163 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHHHH
Confidence 4555666676666543 4455555554422 2123444344555555777788888888887632 112223333333
Q ss_pred HH---HhcCCHhHHHHHHHHHHHCCCCCCHH-HHH-HHHHH---HHhcCC------HHHHHHHHHHHHHCCCCC-CHHH-
Q 002666 760 GL---CRVRKFNKAFVFWQEMQKQGFKPNTI-TYT-TMISG---LAKAGN------ITEANGLFERFKENGGVP-DSAC- 823 (895)
Q Consensus 760 ~~---~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~-~l~~~---~~~~g~------~~~A~~~~~~~~~~~~~p-~~~~- 823 (895)
.+ .. .....|...++.+....+.|... ... .++.- ....++ ++...++++.+.+....| +..+
T Consensus 164 ~i~~l~~-~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~ 242 (278)
T PF08631_consen 164 HIKQLAE-KSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAA 242 (278)
T ss_pred HHHHHHh-hCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 33 22 23345556666555443444443 111 11111 111111 333434444333221222 3222
Q ss_pred --HH----HHHHHHHhcCCHHHHHHHHHHHH
Q 002666 824 --YN----AMMEGLSNANRAMDAYTLFEETR 848 (895)
Q Consensus 824 --~~----~l~~~~~~~g~~~~A~~~~~~~~ 848 (895)
.. .-+..+++.+++++|..+|+-.+
T Consensus 243 ~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 243 SAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 11 22344677788888888887544
No 269
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=95.24 E-value=4.4 Score=41.94 Aligned_cols=126 Identities=13% Similarity=0.124 Sum_probs=80.5
Q ss_pred HHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHH
Q 002666 376 CLGKKGRVTEAMKIFEAMKKDARPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEAGLFPNVMTVNIMVDRLCKAQKLDEA 455 (895)
Q Consensus 376 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 455 (895)
--...||+-.|-+-+....+..|.++.........+...|+++.+...+...... +.....+...+++...+.|++++|
T Consensus 298 k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 298 KQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred HHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHH
Confidence 3345567766666666666655666665555566667778888888777655432 223455677777788888888888
Q ss_pred HHHHHHhhhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCC
Q 002666 456 FSIFEGMDHKTCTPDAVTFCSLIDGLGKNGRVDDAYKFYEKMLDTDQI 503 (895)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 503 (895)
..+-+.|....+. ++.+.......-...|-++++.-.++++...+++
T Consensus 377 ~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 377 LSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred HHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 8888777766554 3333332333334556778888888888766554
No 270
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.23 E-value=2 Score=37.91 Aligned_cols=89 Identities=20% Similarity=0.207 Sum_probs=36.4
Q ss_pred HHHhcCCHhHHHHHHHHHhhCCCCCCHH-hHHHH--HHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 002666 306 VLCKSKRLEEAVAMFEQMDRNREVPCAY-AYNTM--IMGYGSVGKFDEAFSLFERLKQKGCIPSVIAYNSLLTCLGKKGR 382 (895)
Q Consensus 306 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l--~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 382 (895)
.....|+-..|...|+++-...+.|-.. -...| .-.+...|.++......+-+...+-+.-...-..|.-+-.+.|+
T Consensus 103 ~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd 182 (221)
T COG4649 103 LLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGD 182 (221)
T ss_pred HHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccc
Confidence 3444555555555555554443333222 01111 11223444454444444444333322222333344444445555
Q ss_pred HHHHHHHHHHHh
Q 002666 383 VTEAMKIFEAMK 394 (895)
Q Consensus 383 ~~~A~~~~~~~~ 394 (895)
+..|.+.|..+.
T Consensus 183 ~a~A~~~F~qia 194 (221)
T COG4649 183 FAKAKSWFVQIA 194 (221)
T ss_pred hHHHHHHHHHHH
Confidence 555555554443
No 271
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=95.12 E-value=2.6 Score=38.80 Aligned_cols=31 Identities=16% Similarity=0.191 Sum_probs=23.1
Q ss_pred hhhHHHHHHHHhhcCCHHHHHHHHHHHHhCC
Q 002666 471 AVTFCSLIDGLGKNGRVDDAYKFYEKMLDTD 501 (895)
Q Consensus 471 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 501 (895)
..||..++..+...|+.++|..+|+-++...
T Consensus 237 TEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 237 TETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 3467777778888888888888888777643
No 272
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.09 E-value=0.79 Score=41.36 Aligned_cols=95 Identities=18% Similarity=0.173 Sum_probs=71.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCH-----HHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC-HHHHHHHHHH
Q 002666 722 LLDALVKAEEISEAFVCFQSMKDLKCTPNH-----VTYSIIINGLCRVRKFNKAFVFWQEMQKQGFKPN-TITYTTMISG 795 (895)
Q Consensus 722 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~ 795 (895)
=++-+.+.|++++|..-|..++..- ++.. ..|..-.-++.+.+.++.|++-..+.++. .|+ .....--..+
T Consensus 101 EGN~~F~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel--~pty~kAl~RRAea 177 (271)
T KOG4234|consen 101 EGNELFKNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIEL--NPTYEKALERRAEA 177 (271)
T ss_pred HHHHhhhcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc--CchhHHHHHHHHHH
Confidence 4566788999999999999999843 3322 34555666788999999999999999874 453 2333344557
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCH
Q 002666 796 LAKAGNITEANGLFERFKENGGVPDS 821 (895)
Q Consensus 796 ~~~~g~~~~A~~~~~~~~~~~~~p~~ 821 (895)
|.+...+++|++-|+++++ ..|..
T Consensus 178 yek~ek~eealeDyKki~E--~dPs~ 201 (271)
T KOG4234|consen 178 YEKMEKYEEALEDYKKILE--SDPSR 201 (271)
T ss_pred HHhhhhHHHHHHHHHHHHH--hCcch
Confidence 8888999999999999999 66643
No 273
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.95 E-value=8 Score=43.35 Aligned_cols=176 Identities=13% Similarity=0.173 Sum_probs=93.9
Q ss_pred hhHHHHHHHHHHhCCCCCChHhHHHHHHH-----HHhcCChhhHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHhc
Q 002666 243 VDDALFLLDEMKNNAFSVDIVLYNVCIDC-----FGKVGKVDMAWKFFHEMKA-------QGVAPDDVTYTSMIGVLCKS 310 (895)
Q Consensus 243 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~g~~~~A~~~~~~~~~-------~g~~p~~~~~~~l~~~~~~~ 310 (895)
...|..+++...+.| +......++.+ +....+.+.|..+|+.+.+ .| .......+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 356677777666654 22222222222 3345667777777777765 44 233455566666653
Q ss_pred C-----CHhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHcc---CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh---
Q 002666 311 K-----RLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSV---GKFDEAFSLFERLKQKGCIPSVIAYNSLLTCLGK--- 379 (895)
Q Consensus 311 g-----~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~--- 379 (895)
. +.+.|..++.+....+.. +.... ++..|... .+...|.++|....+.| ....+..+..+|..
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g~~-~a~~~--lg~~~~~g~~~~d~~~A~~yy~~Aa~~G---~~~A~~~la~~y~~G~g 375 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELGNP-DAQYL--LGVLYETGTKERDYRRAFEYYSLAAKAG---HILAIYRLALCYELGLG 375 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcCCc-hHHHH--HHHHHHcCCccccHHHHHHHHHHHHHcC---ChHHHHHHHHHHHhCCC
Confidence 2 566788888877776643 33332 33333322 35678888888887776 33344444444432
Q ss_pred -cCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 002666 380 -KGRVTEAMKIFEAMKKDARPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEAG 431 (895)
Q Consensus 380 -~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 431 (895)
..+.+.|..++.+.-....+....-...+..+.. +.++.+...+..+.+.|
T Consensus 376 v~r~~~~A~~~~k~aA~~g~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 376 VERNLELAFAYYKKAAEKGNPSAAYLLGAFYEYGV-GRYDTALALYLYLAELG 427 (552)
T ss_pred cCCCHHHHHHHHHHHHHccChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence 2356677777776655443222222222222333 66666665555555544
No 274
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.89 E-value=3.5 Score=38.83 Aligned_cols=206 Identities=14% Similarity=0.131 Sum_probs=116.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHH
Q 002666 577 QSYSILIHGLVKAGFAHETDQLFYAMKKQGCVLDTRAYNTVVDGFCKSGKVNKAYQLLEEMKTKGHYPTVVTYGSVIDGL 656 (895)
Q Consensus 577 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 656 (895)
..|..-..+|...+++++|...+.+..+- ...+.. + |.....++.|.-+.+++.+- ..-+..|.-....|
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrs-l------fhAAKayEqaamLake~~kl--sEvvdl~eKAs~lY 101 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRS-L------FHAAKAYEQAAMLAKELSKL--SEVVDLYEKASELY 101 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhccc-H------HHHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHH
Confidence 34555666777888888888877666542 111111 1 22233456666666666553 11233455556667
Q ss_pred HccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC---C--CCCCHHHHHHHHHHHHhcCC
Q 002666 657 AKIDRLDEAYMLFEEAKSKGIELNTVIYSSLIDGFGKVGRIDEAYLIMEELMQK---G--LTPNAYTWNCLLDALVKAEE 731 (895)
Q Consensus 657 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~--~~p~~~~~~~l~~~~~~~g~ 731 (895)
...|.++.|...++++-+. ...-++++|+.+|++.... + ...-...+....+.+.+...
T Consensus 102 ~E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~k 165 (308)
T KOG1585|consen 102 VECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEK 165 (308)
T ss_pred HHhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHH
Confidence 7777777666666555432 1234556666666655431 0 00112234445567777778
Q ss_pred HHHHHHHHHHHHh----cCCCCCH-HHHHHHHHHHHhcCCHhHHHHHHHHHHHC-CC--CCCHHHHHHHHHHHHhcCCHH
Q 002666 732 ISEAFVCFQSMKD----LKCTPNH-VTYSIIINGLCRVRKFNKAFVFWQEMQKQ-GF--KPNTITYTTMISGLAKAGNIT 803 (895)
Q Consensus 732 ~~~A~~~~~~~~~----~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~--~p~~~~~~~l~~~~~~~g~~~ 803 (895)
+.+|-..+.+-.. ..--++. ..|-..|-.+....+|..|...++.-.+. ++ .-+..+...|+.+| ..|+.+
T Consensus 166 f~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E 244 (308)
T KOG1585|consen 166 FTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIE 244 (308)
T ss_pred hhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHH
Confidence 8877766665432 1111222 23445566677778999999999886654 22 12355777787766 678887
Q ss_pred HHHHHH
Q 002666 804 EANGLF 809 (895)
Q Consensus 804 ~A~~~~ 809 (895)
++.+++
T Consensus 245 ~~~kvl 250 (308)
T KOG1585|consen 245 EIKKVL 250 (308)
T ss_pred HHHHHH
Confidence 775543
No 275
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.75 E-value=0.88 Score=39.21 Aligned_cols=83 Identities=17% Similarity=0.096 Sum_probs=54.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 002666 369 AYNSLLTCLGKKGRVTEAMKIFEAMKKDARPN---NTTYNVLIDMLCKAGNFEDALKFRDAMKEAGLFPNVMTVNIMVDR 445 (895)
Q Consensus 369 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 445 (895)
.+..-+....+.|++++|++.|+.+....|.. ..+...++.+|.+.+++++|...+++.++.........|...+.+
T Consensus 12 ~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~g 91 (142)
T PF13512_consen 12 ELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRG 91 (142)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHH
Confidence 34444555667778888888888877665543 446667788888888888888888888776533333445555555
Q ss_pred HHhcCC
Q 002666 446 LCKAQK 451 (895)
Q Consensus 446 ~~~~g~ 451 (895)
++....
T Consensus 92 L~~~~~ 97 (142)
T PF13512_consen 92 LSYYEQ 97 (142)
T ss_pred HHHHHH
Confidence 554433
No 276
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=94.61 E-value=0.045 Score=33.88 Aligned_cols=30 Identities=20% Similarity=0.220 Sum_probs=16.6
Q ss_pred HHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHH
Q 002666 810 ERFKENGGVP-DSACYNAMMEGLSNANRAMDAY 841 (895)
Q Consensus 810 ~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~ 841 (895)
+++++ ..| ++..|..|+..|...|++++|+
T Consensus 3 ~kAie--~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 3 KKAIE--LNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHH--HCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 44444 444 4555666666666666665554
No 277
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.34 E-value=2.9 Score=36.77 Aligned_cols=84 Identities=12% Similarity=0.175 Sum_probs=41.4
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 002666 686 SLIDGFGKVGRIDEAYLIMEELMQKGLTPNAYTWNCLLDALVKAEEISEAFVCFQSMKDLKCTPNHVTYSIIINGLCRVR 765 (895)
Q Consensus 686 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 765 (895)
.++..+...+.......+++.+...+ ..+....+.++..|++.+ ..+.++.++. .++......++..|.+.+
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~ 83 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAK 83 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcC
Confidence 34444555555666666666665544 235555555666655442 2333333331 112222334555555566
Q ss_pred CHhHHHHHHHHH
Q 002666 766 KFNKAFVFWQEM 777 (895)
Q Consensus 766 ~~~~A~~~~~~~ 777 (895)
.++++.-++.++
T Consensus 84 l~~~~~~l~~k~ 95 (140)
T smart00299 84 LYEEAVELYKKD 95 (140)
T ss_pred cHHHHHHHHHhh
Confidence 666666665554
No 278
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.31 E-value=3.5 Score=36.30 Aligned_cols=40 Identities=10% Similarity=0.170 Sum_probs=15.6
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 002666 268 CIDCFGKVGKVDMAWKFFHEMKAQGVAPDDVTYTSMIGVLC 308 (895)
Q Consensus 268 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~ 308 (895)
++..+...+.......+++.+...+. .+...++.++..|+
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~ 52 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYA 52 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHH
Confidence 33333333444444444444443331 23333444444443
No 279
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.25 E-value=1.2 Score=47.55 Aligned_cols=128 Identities=19% Similarity=0.181 Sum_probs=60.8
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 002666 649 YGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNTVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNAYTWNCLLDALVK 728 (895)
Q Consensus 649 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 728 (895)
...++.-+.+.|..+.|+++-+ |+.+ --....+.|+++.|.++.++ .++...|..|+.....
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~---------D~~~---rFeLAl~lg~L~~A~~~a~~------~~~~~~W~~Lg~~AL~ 359 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVT---------DPDH---RFELALQLGNLDIALEIAKE------LDDPEKWKQLGDEALR 359 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS----------HHH---HHHHHHHCT-HHHHHHHCCC------CSTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHhhcC---------ChHH---HhHHHHhcCCHHHHHHHHHh------cCcHHHHHHHHHHHHH
Confidence 4455555555666666655432 1111 11223445666666555432 1355566666666666
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 002666 729 AEEISEAFVCFQSMKDLKCTPNHVTYSIIINGLCRVRKFNKAFVFWQEMQKQGFKPNTITYTTMISGLAKAGNITEANGL 808 (895)
Q Consensus 729 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 808 (895)
+|+++-|.+.|++..+ +..|+-.|...|+.+.-.++.+.....| -++....++.-.|+.++.+++
T Consensus 360 ~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~n~af~~~~~lgd~~~cv~l 424 (443)
T PF04053_consen 360 QGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG------DINIAFQAALLLGDVEECVDL 424 (443)
T ss_dssp TTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHH
T ss_pred cCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc------CHHHHHHHHHHcCCHHHHHHH
Confidence 6666666666665543 3445555555666555555555444433 122233333344555555544
Q ss_pred H
Q 002666 809 F 809 (895)
Q Consensus 809 ~ 809 (895)
+
T Consensus 425 L 425 (443)
T PF04053_consen 425 L 425 (443)
T ss_dssp H
T ss_pred H
Confidence 4
No 280
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.06 E-value=1.6 Score=46.83 Aligned_cols=20 Identities=30% Similarity=0.283 Sum_probs=8.9
Q ss_pred HHHHHHHHHhcCCHHHHHHH
Q 002666 370 YNSLLTCLGKKGRVTEAMKI 389 (895)
Q Consensus 370 ~~~l~~~~~~~g~~~~A~~~ 389 (895)
.+.++..+.+.|..+.|+++
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~ 317 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQF 317 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHhh
Confidence 44444444444444444444
No 281
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=93.83 E-value=1.4 Score=37.50 Aligned_cols=78 Identities=14% Similarity=0.212 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhC---------------CCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHC-
Q 002666 228 HLFTTLIRVFAREGRVDDALFLLDEMKNN---------------AFSVDIVLYNVCIDCFGKVGKVDMAWKFFHEMKAQ- 291 (895)
Q Consensus 228 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 291 (895)
.++..++.++++.|+.+....+++..-.. ...|+..+..+++.+|+..|++..|.++.+...+.
T Consensus 3 ~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y 82 (126)
T PF12921_consen 3 ELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKY 82 (126)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHc
Confidence 34455555555555555555555443211 12244444444555555555555555554444433
Q ss_pred CCCCCHHHHHHHHH
Q 002666 292 GVAPDDVTYTSMIG 305 (895)
Q Consensus 292 g~~p~~~~~~~l~~ 305 (895)
+++-+..+|..|+.
T Consensus 83 ~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 83 PIPIPKEFWRRLLE 96 (126)
T ss_pred CCCCCHHHHHHHHH
Confidence 33333444444444
No 282
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=93.81 E-value=10 Score=39.95 Aligned_cols=100 Identities=14% Similarity=0.154 Sum_probs=66.3
Q ss_pred CCCHHHHH-HHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHC-CCCCCHHH
Q 002666 748 TPNHVTYS-IIINGLCRVRKFNKAFVFWQEMQKQGFKPNTITYTTMISG--LAKAGNITEANGLFERFKEN-GGVPDSAC 823 (895)
Q Consensus 748 ~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~-~~~p~~~~ 823 (895)
.|+..++. .+++.+.+.|-+.+|...+..+... .+|+...|..++.. -....++.-+.++|+.+... | -|+..
T Consensus 456 ~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg--~d~~l 532 (568)
T KOG2396|consen 456 GADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG--ADSDL 532 (568)
T ss_pred CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC--CChHH
Confidence 45555543 5677777788888888888888764 34566677777664 22233477788888887764 4 46677
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 002666 824 YNAMMEGLSNANRAMDAYTLFEETRRK 850 (895)
Q Consensus 824 ~~~l~~~~~~~g~~~~A~~~~~~~~~~ 850 (895)
|......-...|..+.+-.++.++.+.
T Consensus 533 w~~y~~~e~~~g~~en~~~~~~ra~kt 559 (568)
T KOG2396|consen 533 WMDYMKEELPLGRPENCGQIYWRAMKT 559 (568)
T ss_pred HHHHHHhhccCCCcccccHHHHHHHHh
Confidence 776666666777777777666665443
No 283
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.75 E-value=2.1 Score=38.81 Aligned_cols=129 Identities=9% Similarity=0.033 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHH--HHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHH-----
Q 002666 716 AYTWNCLLDALVKAEEISEAFVCFQSMKDLKCTPNHVTYS--IIINGLCRVRKFNKAFVFWQEMQKQGFKPNTIT----- 788 (895)
Q Consensus 716 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~----- 788 (895)
...|..++...- .+.. +.....+++...........+. .+...+...+++++|...++..... |....
T Consensus 54 S~~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~ 128 (207)
T COG2976 54 SAQYQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALA 128 (207)
T ss_pred HHHHHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHH
Confidence 344555544432 2333 4444455555422111112222 2345567778888888887777642 22222
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 002666 789 YTTMISGLAKAGNITEANGLFERFKENGGVPDSACYNAMMEGLSNANRAMDAYTLFEETRRKG 851 (895)
Q Consensus 789 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 851 (895)
---|.+.....|.+++|+..++...+.+. .+.....-++++...|+.++|+.-|++.+..+
T Consensus 129 ~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 129 ALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 23344556777888888887777665332 23334455677888888888888888887774
No 284
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=93.63 E-value=1.4 Score=37.62 Aligned_cols=29 Identities=14% Similarity=0.153 Sum_probs=19.6
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 002666 750 NHVTYSIIINGLCRVRKFNKAFVFWQEMQ 778 (895)
Q Consensus 750 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 778 (895)
|..++..++.++++.|+.+....+++..-
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~W 29 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVW 29 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhc
Confidence 34566677777777777777777766554
No 285
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.60 E-value=0.15 Score=32.10 Aligned_cols=26 Identities=12% Similarity=0.083 Sum_probs=18.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002666 823 CYNAMMEGLSNANRAMDAYTLFEETR 848 (895)
Q Consensus 823 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 848 (895)
+|..|+..|.+.|++++|+.+|++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35677777888888888888877754
No 286
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=93.32 E-value=18 Score=41.25 Aligned_cols=51 Identities=16% Similarity=0.142 Sum_probs=25.6
Q ss_pred cCCHHHHHHHHHHHHHC----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 002666 694 VGRIDEAYLIMEELMQK----GLTPNAYTWNCLLDALVKAEEISEAFVCFQSMKD 744 (895)
Q Consensus 694 ~g~~~~A~~~~~~~~~~----~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 744 (895)
.|++++|.++.+..+.. -..+....+..+..+..-.|++++|..+..+..+
T Consensus 471 ~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~ 525 (894)
T COG2909 471 RGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQ 525 (894)
T ss_pred cCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHH
Confidence 45556665555555442 1112344444455555555666666555555443
No 287
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=93.23 E-value=4.5 Score=34.03 Aligned_cols=62 Identities=26% Similarity=0.306 Sum_probs=31.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 002666 371 NSLLTCLGKKGRVTEAMKIFEAMKKDARPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEAGL 432 (895)
Q Consensus 371 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 432 (895)
..-+..+.+.|+-+.-.+++..+.+...+++.....++.+|.+.|+..++.+++.++-+.|+
T Consensus 90 D~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 90 DLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 33444455555555555565555555555666666666666666666666666666666554
No 288
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.16 E-value=6.6 Score=35.79 Aligned_cols=116 Identities=15% Similarity=0.087 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHCCCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH--HHHHHHHHHHHhcCCHhHHHHHH
Q 002666 699 EAYLIMEELMQKGLTPNAYTWN--CLLDALVKAEEISEAFVCFQSMKDLKCTPNH--VTYSIIINGLCRVRKFNKAFVFW 774 (895)
Q Consensus 699 ~A~~~~~~~~~~~~~p~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~ 774 (895)
+.....+++........-.++. .+...+...+++++|...++..+......+. .+-..|.......|.+++|+..+
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L 149 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTL 149 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 4455555665532121222222 3456788899999999999988862211111 12225667788999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 002666 775 QEMQKQGFKPNTITYTTMISGLAKAGNITEANGLFERFKENG 816 (895)
Q Consensus 775 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 816 (895)
+...+.++ .......-+..+...|+-++|+..|++.++.+
T Consensus 150 ~t~~~~~w--~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 150 DTIKEESW--AAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred hccccccH--HHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 88765432 22334445667999999999999999999864
No 289
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=93.11 E-value=0.096 Score=32.39 Aligned_cols=32 Identities=22% Similarity=0.462 Sum_probs=21.7
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 002666 390 FEAMKKDARPNNTTYNVLIDMLCKAGNFEDAL 421 (895)
Q Consensus 390 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 421 (895)
|++..+..|.+..+|+.++.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 34455556777777777777777777777764
No 290
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=93.10 E-value=17 Score=40.32 Aligned_cols=120 Identities=16% Similarity=0.130 Sum_probs=53.8
Q ss_pred HHccCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHh
Q 002666 691 FGKVGRIDEAYLIMEELMQKGLTPNAY--TWNCLLDALVKAEEISEAFVCFQSMKDLKCTPNHVTYSIIINGLCRVRKFN 768 (895)
Q Consensus 691 ~~~~g~~~~A~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 768 (895)
+..-|+.++|..+.+++.... .|-.. -..+++.+|+-.|+.....+++.-... +...|..-+..+.-++.-..+++
T Consensus 511 L~~ygrqe~Ad~lI~el~~dk-dpilR~~Gm~t~alAy~GTgnnkair~lLh~aVs-D~nDDVrRaAVialGFVl~~dp~ 588 (929)
T KOG2062|consen 511 LVVYGRQEDADPLIKELLRDK-DPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVS-DVNDDVRRAAVIALGFVLFRDPE 588 (929)
T ss_pred HHHhhhhhhhHHHHHHHhcCC-chhhhhhhHHHHHHHHhccCchhhHHHhhccccc-ccchHHHHHHHHHheeeEecChh
Confidence 334455556666666665532 12110 112344455566665544444443333 22333333333333444445555
Q ss_pred HHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002666 769 KAFVFWQEMQKQGFKPNTI--TYTTMISGLAKAGNITEANGLFERFKE 814 (895)
Q Consensus 769 ~A~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~ 814 (895)
....+..-+.+. +.|... +--.|+-+|.-.|+ .+|+.+++-|..
T Consensus 589 ~~~s~V~lLses-~N~HVRyGaA~ALGIaCAGtG~-~eAi~lLepl~~ 634 (929)
T KOG2062|consen 589 QLPSTVSLLSES-YNPHVRYGAAMALGIACAGTGL-KEAINLLEPLTS 634 (929)
T ss_pred hchHHHHHHhhh-cChhhhhhHHHHHhhhhcCCCc-HHHHHHHhhhhc
Confidence 555555544443 333332 22233333443443 556666666654
No 291
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=93.09 E-value=34 Score=43.81 Aligned_cols=321 Identities=10% Similarity=0.032 Sum_probs=169.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCC--CCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 002666 511 SLIRNFFKHGRKEDGHKIYKEMVQRGC--SPDLMLLNTYMDCVFKAGETEKGRALFEEIKAQGFVPDVQSYSILIHGLVK 588 (895)
Q Consensus 511 ~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 588 (895)
.+..+-.+.+.+..|...++.-..... ......+..+...|...++++....+...-.. .|+. ...+-....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~~sl---~~qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA---DPSL---YQQILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---CccH---HHHHHHHHh
Confidence 456667788889999888887411100 11122333444488888888888777664111 2222 223444667
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHhHHH-HHHHHHccCCHHHHHH
Q 002666 589 AGFAHETDQLFYAMKKQGCVLDTRAYNTVVDGFCKSGKVNKAYQLLEEMKTKGHYPTVVTYGS-VIDGLAKIDRLDEAYM 667 (895)
Q Consensus 589 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~-l~~~~~~~~~~~~A~~ 667 (895)
.|++..|...|+.+.+.+ ++...+++.++......|.++..+-..+-..... .+....++. -+.+-.+.++++....
T Consensus 1462 ~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~ 1539 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLES 1539 (2382)
T ss_pred hccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhh
Confidence 899999999999999875 3447778888888888888888877666555431 222223322 2333366677776666
Q ss_pred HHHHHHHcCCCcCHHHHHH--HHHHHHcc--CCHHHHHHHHHHHHHCCCCC---------CHHHHHHHHHHHHhcCCHHH
Q 002666 668 LFEEAKSKGIELNTVIYSS--LIDGFGKV--GRIDEAYLIMEELMQKGLTP---------NAYTWNCLLDALVKAEEISE 734 (895)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~~--l~~~~~~~--g~~~~A~~~~~~~~~~~~~p---------~~~~~~~l~~~~~~~g~~~~ 734 (895)
.+. .. +...|.. ++....+. .+.-.-.+..+.+.+.-+.| -...|..++..+.... .+.
T Consensus 1540 ~l~---~~----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~e-l~~ 1611 (2382)
T KOG0890|consen 1540 YLS---DR----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLE-LEN 1611 (2382)
T ss_pred hhh---cc----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHH-HHH
Confidence 554 11 1122222 22222221 12111112222222210111 1123333333332211 111
Q ss_pred HHHHHHHHHh-cCCCCCHHHHHHHHHHHHhcCCHhHHHHHHH----HHHHCCCCCC-----HHHHHHHHHHHHhcCCHHH
Q 002666 735 AFVCFQSMKD-LKCTPNHVTYSIIINGLCRVRKFNKAFVFWQ----EMQKQGFKPN-----TITYTTMISGLAKAGNITE 804 (895)
Q Consensus 735 A~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~----~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~ 804 (895)
-.+....... .....+..-|-.-+. +.+....+.+-.- .+......|+ ..+|-...+.....|.++.
T Consensus 1612 ~~~~l~~~s~~~~s~~~sd~W~~Rl~---~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~ 1688 (2382)
T KOG0890|consen 1612 SIEELKKVSYDEDSANNSDNWKNRLE---RTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQR 1688 (2382)
T ss_pred HHHHhhccCccccccccchhHHHHHH---HhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHH
Confidence 1111111110 001111111211111 1122222222222 2222112222 4588888888888999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 002666 805 ANGLFERFKENGGVPDSACYNAMMEGLSNANRAMDAYTLFEETRRKGFN 853 (895)
Q Consensus 805 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 853 (895)
|...+-++.+.+ -+..+...+.-+...|+...|+.++++.+++..+
T Consensus 1689 A~nall~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~ 1734 (2382)
T KOG0890|consen 1689 AQNALLNAKESR---LPEIVLERAKLLWQTGDELNALSVLQEILSKNFP 1734 (2382)
T ss_pred HHHHHHhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcc
Confidence 999888888754 3456778888999999999999999999877543
No 292
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=92.60 E-value=5.6 Score=33.49 Aligned_cols=137 Identities=12% Similarity=0.189 Sum_probs=64.2
Q ss_pred ccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHhcCCHHHHHH
Q 002666 344 SVGKFDEAFSLFERLKQKGCIPSVIAYNSLLTCLGKKGRVTEAMKIFEAMKKDARPNN-TTYNVLIDMLCKAGNFEDALK 422 (895)
Q Consensus 344 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~ 422 (895)
-.|.+++..++..+.... .+..-++.+|.-....-+-+-..++++.+-+.+.-+. .-...++.+|...|.
T Consensus 14 ldG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~NlKrVi~C~~~~n~------ 84 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCGNLKRVIECYAKRNK------ 84 (161)
T ss_dssp HTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S-THHHHHHHHHTT-------
T ss_pred HhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCchhhcchHHHHHHHHHhcc------
Confidence 456667777777776664 2555666666555555555555555555433211110 011122222222221
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCC
Q 002666 423 FRDAMKEAGLFPNVMTVNIMVDRLCKAQKLDEAFSIFEGMDHKTCTPDAVTFCSLIDGLGKNGRVDDAYKFYEKMLDTDQ 502 (895)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 502 (895)
+.......+..+...|+-|.-.+++..+.+. -.+++.....++.+|.+.|+..++.+++.++-+.|.
T Consensus 85 ------------~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 85 ------------LSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp --------------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred ------------hHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 2223344455556666666666666665542 244556666666666666666666666666666654
No 293
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=92.42 E-value=21 Score=39.66 Aligned_cols=125 Identities=10% Similarity=-0.019 Sum_probs=80.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH--HHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 002666 721 CLLDALVKAEEISEAFVCFQSMKDLKCTPNH--VTYSIIINGLCRVRKFNKAFVFWQEMQKQGFKPNTITYTTMISGLAK 798 (895)
Q Consensus 721 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 798 (895)
.+.-++..-|+.++|..+.++|.... .|-. .-..+++.+|+..|+..-..+++.-.+.. ...|..-+....-++.-
T Consensus 506 ~vGiaL~~ygrqe~Ad~lI~el~~dk-dpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD-~nDDVrRaAVialGFVl 583 (929)
T KOG2062|consen 506 AVGIALVVYGRQEDADPLIKELLRDK-DPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSD-VNDDVRRAAVIALGFVL 583 (929)
T ss_pred HHhHHHHHhhhhhhhHHHHHHHhcCC-chhhhhhhHHHHHHHHhccCchhhHHHhhcccccc-cchHHHHHHHHHheeeE
Confidence 45556777888899999999998733 2322 12335667888899887777777665532 22233333333334555
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHH--HHHHHHhcCCHHHHHHHHHHHHH
Q 002666 799 AGNITEANGLFERFKENGGVPDSACYNA--MMEGLSNANRAMDAYTLFEETRR 849 (895)
Q Consensus 799 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~--l~~~~~~~g~~~~A~~~~~~~~~ 849 (895)
..+.+....+.+-+.+. ++|....-.+ |+-+|.-.|+. +|+.+++-|..
T Consensus 584 ~~dp~~~~s~V~lLses-~N~HVRyGaA~ALGIaCAGtG~~-eAi~lLepl~~ 634 (929)
T KOG2062|consen 584 FRDPEQLPSTVSLLSES-YNPHVRYGAAMALGIACAGTGLK-EAINLLEPLTS 634 (929)
T ss_pred ecChhhchHHHHHHhhh-cChhhhhhHHHHHhhhhcCCCcH-HHHHHHhhhhc
Confidence 67888888888777664 7776554444 44445555654 69999998865
No 294
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=92.09 E-value=15 Score=37.31 Aligned_cols=83 Identities=13% Similarity=0.033 Sum_probs=38.3
Q ss_pred ccCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHH----ccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHc----c
Q 002666 623 KSGKVNKAYQLLEEMKTKGHYPTVVTYGSVIDGLA----KIDRLDEAYMLFEEAKSKGIELNTVIYSSLIDGFGK----V 694 (895)
Q Consensus 623 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~----~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~ 694 (895)
..+++..+...+......+ +......+...|. ...+..+|..+|+.+.+.|. ......|...|.. .
T Consensus 53 ~~~~~~~a~~~~~~a~~~~---~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~---~~a~~~lg~~~~~G~gv~ 126 (292)
T COG0790 53 YPPDYAKALKSYEKAAELG---DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGL---AEALFNLGLMYANGRGVP 126 (292)
T ss_pred ccccHHHHHHHHHHhhhcC---ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhccc---HHHHHhHHHHHhcCCCcc
Confidence 4456666666666665532 1122222333332 22345556666665554442 2222233333333 2
Q ss_pred CCHHHHHHHHHHHHHCC
Q 002666 695 GRIDEAYLIMEELMQKG 711 (895)
Q Consensus 695 g~~~~A~~~~~~~~~~~ 711 (895)
.+..+|...|+++.+.|
T Consensus 127 ~d~~~A~~~~~~Aa~~g 143 (292)
T COG0790 127 LDLVKALKYYEKAAKLG 143 (292)
T ss_pred cCHHHHHHHHHHHHHcC
Confidence 24555555555555544
No 295
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=91.95 E-value=1.1 Score=43.89 Aligned_cols=95 Identities=17% Similarity=0.087 Sum_probs=65.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 002666 722 LLDALVKAEEISEAFVCFQSMKDLKCTPNHVTYSIIINGLCRVRKFNKAFVFWQEMQKQGFKPNTITYTTMISGLAKAGN 801 (895)
Q Consensus 722 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 801 (895)
-++-|.++|.+++|+.+|.+.+... +.+.+++..-..+|.+.+++..|..-...++..+ .--...|.--+.+-...|+
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhh
Confidence 4667888888888888888877633 2277777777888888888888887777766421 0012345445555555677
Q ss_pred HHHHHHHHHHHHHCCCCCC
Q 002666 802 ITEANGLFERFKENGGVPD 820 (895)
Q Consensus 802 ~~~A~~~~~~~~~~~~~p~ 820 (895)
..+|.+-++..++ ..|+
T Consensus 181 ~~EAKkD~E~vL~--LEP~ 197 (536)
T KOG4648|consen 181 NMEAKKDCETVLA--LEPK 197 (536)
T ss_pred HHHHHHhHHHHHh--hCcc
Confidence 7777777777777 6665
No 296
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=91.83 E-value=1.8 Score=42.42 Aligned_cols=61 Identities=8% Similarity=0.145 Sum_probs=32.8
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002666 753 TYSIIINGLCRVRKFNKAFVFWQEMQKQGFKPNTITYTTMISGLAKAGNITEANGLFERFKE 814 (895)
Q Consensus 753 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 814 (895)
++..++..+...|+++.+.+.++++.+. -+-+...|..++.+|.+.|+...|+..|+++.+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~-dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIEL-DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhc-CccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 3444555555555555555555555543 123445555555555555555555555555543
No 297
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.68 E-value=6 Score=35.00 Aligned_cols=19 Identities=21% Similarity=0.295 Sum_probs=9.4
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 002666 796 LAKAGNITEANGLFERFKE 814 (895)
Q Consensus 796 ~~~~g~~~~A~~~~~~~~~ 814 (895)
+...|++.+|+.+++.+.+
T Consensus 54 ~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 54 HIVRGDWDDALRLLRELEE 72 (160)
T ss_pred HHHhCCHHHHHHHHHHHhc
Confidence 3444555555555555443
No 298
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=91.66 E-value=0.89 Score=44.61 Aligned_cols=55 Identities=15% Similarity=0.027 Sum_probs=32.8
Q ss_pred HHHHhcCCHhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 002666 305 GVLCKSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLFERLKQ 360 (895)
Q Consensus 305 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 360 (895)
+-|+++|.|++|+++|.......+. +.+++..-..+|.+...+..|+.-...++.
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~P~-NpV~~~NRA~AYlk~K~FA~AE~DC~~Aia 159 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVYPH-NPVYHINRALAYLKQKSFAQAEEDCEAAIA 159 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccCCC-CccchhhHHHHHHHHHHHHHHHHhHHHHHH
Confidence 3456666666666666666555443 555666666666666666666555555544
No 299
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=91.59 E-value=1.4 Score=42.13 Aligned_cols=31 Identities=23% Similarity=0.354 Sum_probs=17.4
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 002666 281 AWKFFHEMKAQGVAPDDVTYTSMIGVLCKSK 311 (895)
Q Consensus 281 A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g 311 (895)
+++++++|...|+.||..+-..|++++.+.+
T Consensus 142 ~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~ 172 (406)
T KOG3941|consen 142 AIKVLEQMEWHGVMPDKEIEDILVNAFGRWN 172 (406)
T ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHhcccc
Confidence 4555555555555555555555555554443
No 300
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=91.50 E-value=13 Score=35.48 Aligned_cols=188 Identities=13% Similarity=0.111 Sum_probs=104.5
Q ss_pred cCChHHHHHHHHHHHHcCCCCC---HHhHHHHHHHHHccCChHHHHHHHHHHHHC---CC--CCCHHhHHHHHHHHHccC
Q 002666 589 AGFAHETDQLFYAMKKQGCVLD---TRAYNTVVDGFCKSGKVNKAYQLLEEMKTK---GH--YPTVVTYGSVIDGLAKID 660 (895)
Q Consensus 589 ~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~--~p~~~~~~~l~~~~~~~~ 660 (895)
...+++|..-|++.++...... -.+...++....+.+++++-...+.+++.- .+ .-+....+++++......
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 3478888888888887532222 344556778888888888888888877532 11 123445566666555555
Q ss_pred CHHHHHHHHHHHHHc--CCCcCHH----HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC----CH-------HHHHHHH
Q 002666 661 RLDEAYMLFEEAKSK--GIELNTV----IYSSLIDGFGKVGRIDEAYLIMEELMQKGLTP----NA-------YTWNCLL 723 (895)
Q Consensus 661 ~~~~A~~~~~~~~~~--~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p----~~-------~~~~~l~ 723 (895)
+.+--.+.++..++. +.. +.. +-..|...|...|.+..-.+++.++....... |. ..|..=+
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAK-NeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEI 198 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAK-NERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEI 198 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhh-cceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHh
Confidence 666555555544332 001 111 22456667777777777777777776642221 11 2344445
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcC-CCCCHHHHHHHH----HHHHhcCCHhHHHHHHHHH
Q 002666 724 DALVKAEEISEAFVCFQSMKDLK-CTPNHVTYSIII----NGLCRVRKFNKAFVFWQEM 777 (895)
Q Consensus 724 ~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~l~----~~~~~~g~~~~A~~~~~~~ 777 (895)
..|-.+.+-.+-..+|++.+... --|.+.....+- ....+.|++++|-.-|-++
T Consensus 199 QmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEA 257 (440)
T KOG1464|consen 199 QMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEA 257 (440)
T ss_pred hhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHH
Confidence 55666666666667777665421 123332222221 1234567777776444333
No 301
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=91.49 E-value=0.48 Score=29.21 Aligned_cols=26 Identities=23% Similarity=0.322 Sum_probs=10.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002666 789 YTTMISGLAKAGNITEANGLFERFKE 814 (895)
Q Consensus 789 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 814 (895)
|..++.++...|++++|+..++++++
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 33444444444444444444444443
No 302
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.47 E-value=0.46 Score=29.84 Aligned_cols=27 Identities=11% Similarity=0.122 Sum_probs=20.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002666 788 TYTTMISGLAKAGNITEANGLFERFKE 814 (895)
Q Consensus 788 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 814 (895)
+|..|...|.+.|++++|++++++.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 467788888888888888888888554
No 303
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=91.42 E-value=7.1 Score=35.89 Aligned_cols=62 Identities=16% Similarity=0.177 Sum_probs=37.6
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCC--HHhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 002666 299 TYTSMIGVLCKSKRLEEAVAMFEQMDRNREVPC--AYAYNTMIMGYGSVGKFDEAFSLFERLKQ 360 (895)
Q Consensus 299 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 360 (895)
.+..++..|++.|+++.|++.|.++......+. ...+..+++.....+++..+.....++..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 455666667777777777777776655433222 33455566666666676666666665544
No 304
>PRK09687 putative lyase; Provisional
Probab=91.29 E-value=17 Score=36.39 Aligned_cols=233 Identities=11% Similarity=0.070 Sum_probs=131.2
Q ss_pred CCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCCH----HHHHHHHHHHHHcCCCcCHHHH
Q 002666 609 LDTRAYNTVVDGFCKSGKVNKAYQLLEEMKTKGHYPTVVTYGSVIDGLAKIDRL----DEAYMLFEEAKSKGIELNTVIY 684 (895)
Q Consensus 609 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~----~~A~~~~~~~~~~~~~~~~~~~ 684 (895)
+|.......+.++...|. +++...+..+... ++...-...+.++...|+. +++...+..+... .++..+-
T Consensus 35 ~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR 108 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGG-QDVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVR 108 (280)
T ss_pred CCHHHHHHHHHHHHhcCc-chHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHH
Confidence 455555556666665554 3333444444332 3555555566666666653 4566666665433 3455555
Q ss_pred HHHHHHHHccCC-----HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 002666 685 SSLIDGFGKVGR-----IDEAYLIMEELMQKGLTPNAYTWNCLLDALVKAEEISEAFVCFQSMKDLKCTPNHVTYSIIIN 759 (895)
Q Consensus 685 ~~l~~~~~~~g~-----~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 759 (895)
...+.++...+. ...+...+..+.. .++..+-...+.++.+.++ ++|+..+-.+++ .++...-...+.
T Consensus 109 ~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~~A~~ 181 (280)
T PRK09687 109 ASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLK---DPNGDVRNWAAF 181 (280)
T ss_pred HHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhc---CCCHHHHHHHHH
Confidence 555555544432 1223333333332 2355555566677776666 567777777775 244444444444
Q ss_pred HHHhcC-CHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 002666 760 GLCRVR-KFNKAFVFWQEMQKQGFKPNTITYTTMISGLAKAGNITEANGLFERFKENGGVPDSACYNAMMEGLSNANRAM 838 (895)
Q Consensus 760 ~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 838 (895)
++...+ ....+...+..+.. .++..+-...+.++.+.|+ ..|+..+-+.++.+ + .....+.++...|..
T Consensus 182 aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~- 251 (280)
T PRK09687 182 ALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK- 251 (280)
T ss_pred HHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-
Confidence 555442 24466666766663 4567777777778878777 56777777776632 2 234566777777775
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 002666 839 DAYTLFEETRRKGFNIHTKTCVILLDAL 866 (895)
Q Consensus 839 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 866 (895)
+|+..+.++... .+|..+......++
T Consensus 252 ~a~p~L~~l~~~--~~d~~v~~~a~~a~ 277 (280)
T PRK09687 252 TLLPVLDTLLYK--FDDNEIITKAIDKL 277 (280)
T ss_pred hHHHHHHHHHhh--CCChhHHHHHHHHH
Confidence 688888888775 33555444444333
No 305
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=91.03 E-value=0.55 Score=28.83 Aligned_cols=26 Identities=12% Similarity=0.143 Sum_probs=11.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002666 824 YNAMMEGLSNANRAMDAYTLFEETRR 849 (895)
Q Consensus 824 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 849 (895)
+..++..+...|++++|++.+++.++
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 44444444444444444444444443
No 306
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=91.02 E-value=2.2 Score=41.93 Aligned_cols=77 Identities=17% Similarity=0.197 Sum_probs=47.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCChhhHHHHH
Q 002666 369 AYNSLLTCLGKKGRVTEAMKIFEAMKKDARPNNTTYNVLIDMLCKAGNFEDALKFRDAMKE-----AGLFPNVMTVNIMV 443 (895)
Q Consensus 369 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~~l~ 443 (895)
++..++..+...|+++.+...++++....|-+...|..++.+|.+.|+...|+..|+++.+ .|+.|...+.....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~ 234 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYE 234 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHH
Confidence 4555555566666666666666666666666666666666666666666666666665543 56777666555444
Q ss_pred HH
Q 002666 444 DR 445 (895)
Q Consensus 444 ~~ 445 (895)
..
T Consensus 235 ~~ 236 (280)
T COG3629 235 EI 236 (280)
T ss_pred HH
Confidence 43
No 307
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=91.00 E-value=2.8 Score=38.47 Aligned_cols=62 Identities=15% Similarity=0.209 Sum_probs=34.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH--HHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 002666 718 TWNCLLDALVKAEEISEAFVCFQSMKDLKCTPNH--VTYSIIINGLCRVRKFNKAFVFWQEMQK 779 (895)
Q Consensus 718 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 779 (895)
.+..++..|++.|+.+.|++.|.++.+....+.. ..+..++......+++..+...+.++..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3445566666666666666666666654333322 3344555566666666666666555543
No 308
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.91 E-value=14 Score=34.72 Aligned_cols=96 Identities=9% Similarity=0.224 Sum_probs=51.4
Q ss_pred HHHHHHhc-CCHHHHHHHHHHHHhc--CCCCCH---HHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHH---HH
Q 002666 722 LLDALVKA-EEISEAFVCFQSMKDL--KCTPNH---VTYSIIINGLCRVRKFNKAFVFWQEMQKQGFKPNTITYT---TM 792 (895)
Q Consensus 722 l~~~~~~~-g~~~~A~~~~~~~~~~--~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~---~l 792 (895)
++..|... .++++|+..|++.-+. +-..+. ..+.-....-...++|.+|+.+|++.....+..+.--|. .+
T Consensus 119 iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~Kdyf 198 (288)
T KOG1586|consen 119 IAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYF 198 (288)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHH
Confidence 34444433 5677777777776541 111111 112223333456688899999999887764443332222 12
Q ss_pred HH---HHHhcCCHHHHHHHHHHHHHCCCCC
Q 002666 793 IS---GLAKAGNITEANGLFERFKENGGVP 819 (895)
Q Consensus 793 ~~---~~~~~g~~~~A~~~~~~~~~~~~~p 819 (895)
+. ++.-.++.-.+...+++..+ ..|
T Consensus 199 lkAgLChl~~~D~v~a~~ALeky~~--~dP 226 (288)
T KOG1586|consen 199 LKAGLCHLCKADEVNAQRALEKYQE--LDP 226 (288)
T ss_pred HHHHHHhHhcccHHHHHHHHHHHHh--cCC
Confidence 22 22233566667777777776 556
No 309
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.89 E-value=11 Score=33.50 Aligned_cols=51 Identities=16% Similarity=0.160 Sum_probs=26.2
Q ss_pred hcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002666 379 KKGRVTEAMKIFEAMKKDARPNNTTYNVLIDMLCKAGNFEDALKFRDAMKE 429 (895)
Q Consensus 379 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 429 (895)
+.++.+++..++..+.-..|.....-..-+..+...|+|.+|..+|+++.+
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 444555555555555444444444444444555555555555555555544
No 310
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=90.68 E-value=24 Score=37.00 Aligned_cols=62 Identities=11% Similarity=0.106 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhcCC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002666 368 IAYNSLLTCLGKKGRVTEAMKIFEAMKKDA----RPNNTTYNVLIDMLCKAGNFEDALKFRDAMKE 429 (895)
Q Consensus 368 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 429 (895)
.++..++..+.+.|.++.|...+..+.... ...+.....-+..+...|+..+|+..++....
T Consensus 147 ~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 147 ETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344555555555555555555555544321 11233444444555555555555555554444
No 311
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=90.31 E-value=2.2 Score=40.91 Aligned_cols=88 Identities=20% Similarity=0.369 Sum_probs=48.6
Q ss_pred CChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCCHHHHHHHH
Q 002666 276 GKVDMAWKFFHEMKAQGVAPDDVTYTSMIGVLCKSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLF 355 (895)
Q Consensus 276 g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 355 (895)
+.++--...++.|.+.|+.-|..+|+.|++.+-+..- .|. ..+.....-|- .+-+-+++++
T Consensus 86 ~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkf----------------iP~-nvfQ~~F~HYP--~QQ~C~I~vL 146 (406)
T KOG3941|consen 86 THVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKF----------------IPQ-NVFQKVFLHYP--QQQNCAIKVL 146 (406)
T ss_pred chHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccc----------------ccH-HHHHHHHhhCc--hhhhHHHHHH
Confidence 4455555566677777777777777777776533211 111 11111111121 2223456667
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 002666 356 ERLKQKGCIPSVIAYNSLLTCLGKKGR 382 (895)
Q Consensus 356 ~~~~~~~~~~~~~~~~~l~~~~~~~g~ 382 (895)
++|...|+.||..+-..|++++.+.|-
T Consensus 147 eqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 147 EQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHcCCCCchHHHHHHHHHhccccc
Confidence 777777777777777777776666554
No 312
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=90.00 E-value=0.8 Score=28.09 Aligned_cols=28 Identities=25% Similarity=0.237 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002666 787 ITYTTMISGLAKAGNITEANGLFERFKE 814 (895)
Q Consensus 787 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 814 (895)
..|..++.++...|++++|++.+++.++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3566677777777777777777777776
No 313
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=89.78 E-value=24 Score=35.60 Aligned_cols=130 Identities=13% Similarity=0.194 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHCCCCCCHHhHHHHHHHHHc--cC----CHHHHHHHHHHHHHcCC---CcCHHHHHHHHHHHHccCC--
Q 002666 628 NKAYQLLEEMKTKGHYPTVVTYGSVIDGLAK--ID----RLDEAYMLFEEAKSKGI---ELNTVIYSSLIDGFGKVGR-- 696 (895)
Q Consensus 628 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~--~~----~~~~A~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~-- 696 (895)
++.+.+++.+.+.|+.-+..+|.+....... .. ....|..+|+.|.+... .++-..+..++.. ..++
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 3445566677777776666555443222222 11 24457777777776531 1122233333221 2222
Q ss_pred --HHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcC-C--HHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 002666 697 --IDEAYLIMEELMQKGLTP-NAYTWNCLLDALVKAE-E--ISEAFVCFQSMKDLKCTPNHVTYSIIIN 759 (895)
Q Consensus 697 --~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g-~--~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 759 (895)
.+.+..+|+.+.+.|+.. |..-+.+-+-++.... . ..++.++++.+.+.++++....|..++-
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHH
Confidence 344566666666666665 2222222222222111 1 3466677777777777666666655443
No 314
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=89.75 E-value=5.7 Score=35.75 Aligned_cols=73 Identities=27% Similarity=0.314 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 002666 698 DEAYLIMEELMQKGLTPN-AYTWNCLLDALVKAE-----------EISEAFVCFQSMKDLKCTPNHVTYSIIINGLCRVR 765 (895)
Q Consensus 698 ~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g-----------~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 765 (895)
++|+.-|++++. +.|+ ..++..++.+|...+ .+++|.+.|++..+ ..|+...|+.-+...
T Consensus 52 edAisK~eeAL~--I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~---- 123 (186)
T PF06552_consen 52 EDAISKFEEALK--INPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMA---- 123 (186)
T ss_dssp HHHHHHHHHHHH--H-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHH----
T ss_pred HHHHHHHHHHHh--cCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHH----
Confidence 444444555554 3443 345555555554332 13445555555554 336666666555443
Q ss_pred CHhHHHHHHHHHHHC
Q 002666 766 KFNKAFVFWQEMQKQ 780 (895)
Q Consensus 766 ~~~~A~~~~~~~~~~ 780 (895)
.+|-++..++.++
T Consensus 124 --~kap~lh~e~~~~ 136 (186)
T PF06552_consen 124 --AKAPELHMEIHKQ 136 (186)
T ss_dssp --HTHHHHHHHHHHS
T ss_pred --HhhHHHHHHHHHH
Confidence 2455555555544
No 315
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=89.01 E-value=22 Score=34.09 Aligned_cols=190 Identities=9% Similarity=0.029 Sum_probs=119.5
Q ss_pred ccCChHHHHHHHHHHHHCCCCCCH---HhHHHHHHHHHccCCHHHHHHHHHHHHHc-----CCCcCHHHHHHHHHHHHcc
Q 002666 623 KSGKVNKAYQLLEEMKTKGHYPTV---VTYGSVIDGLAKIDRLDEAYMLFEEAKSK-----GIELNTVIYSSLIDGFGKV 694 (895)
Q Consensus 623 ~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~ 694 (895)
+..++++|+.-|++..+....-.. .+...++..+.+.+++++..+.+++++.- .-..+....+++++.-...
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 445789999999998875322222 24456788889999999999999887642 1123445667777666666
Q ss_pred CCHHHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC----CCC-------HHHHHHHH
Q 002666 695 GRIDEAYLIMEELMQK-----GLTPNAYTWNCLLDALVKAEEISEAFVCFQSMKDLKC----TPN-------HVTYSIII 758 (895)
Q Consensus 695 g~~~~A~~~~~~~~~~-----~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~p~-------~~~~~~l~ 758 (895)
.+++--..+|+.-++. +-..-..|-.-|...|...|++.+-..+++++.+..- ..| ...|..-+
T Consensus 119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEI 198 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEI 198 (440)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHh
Confidence 6666666666654431 1001122334577788888888888888888765321 111 14566777
Q ss_pred HHHHhcCCHhHHHHHHHHHHHC-CCCCCHHHHHHHHH----HHHhcCCHHHHHHHHHHH
Q 002666 759 NGLCRVRKFNKAFVFWQEMQKQ-GFKPNTITYTTMIS----GLAKAGNITEANGLFERF 812 (895)
Q Consensus 759 ~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~----~~~~~g~~~~A~~~~~~~ 812 (895)
..|..+++..+-..+|++.+.- ...|.+.+...+-. .+.+.|.+++|..-|=++
T Consensus 199 QmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEA 257 (440)
T KOG1464|consen 199 QMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEA 257 (440)
T ss_pred hhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHH
Confidence 7888888877777888877643 33455544433322 366788888887544443
No 316
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=88.91 E-value=1 Score=27.67 Aligned_cols=26 Identities=19% Similarity=0.258 Sum_probs=12.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 002666 719 WNCLLDALVKAEEISEAFVCFQSMKD 744 (895)
Q Consensus 719 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 744 (895)
|..++.+|...|++++|+..|+++++
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 44444444445555555555544444
No 317
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=88.86 E-value=8.2 Score=36.36 Aligned_cols=85 Identities=12% Similarity=0.106 Sum_probs=53.6
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCHHH-HHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCH
Q 002666 725 ALVKAEEISEAFVCFQSMKDLKCTPNHVT-YSIIINGLCRVRKFNKAFVFWQEMQKQGFKPNT-ITYTTMISGLAKAGNI 802 (895)
Q Consensus 725 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~ 802 (895)
.|.....+..|+..|.+.+. +.|...+ |..-+.++.+..+++.+..-..+.++ +.|+. .....+..++.....+
T Consensus 19 k~f~~k~y~~ai~~y~raI~--~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~ 94 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAIC--INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGY 94 (284)
T ss_pred cccchhhhchHHHHHHHHHh--cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccc
Confidence 35555667777777777766 4465533 34556666677777777766666665 55554 3455556666666777
Q ss_pred HHHHHHHHHHH
Q 002666 803 TEANGLFERFK 813 (895)
Q Consensus 803 ~~A~~~~~~~~ 813 (895)
++|+..+.++.
T Consensus 95 ~eaI~~Lqra~ 105 (284)
T KOG4642|consen 95 DEAIKVLQRAY 105 (284)
T ss_pred cHHHHHHHHHH
Confidence 77777777763
No 318
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=88.32 E-value=31 Score=34.89 Aligned_cols=85 Identities=13% Similarity=0.256 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHHHHHh--c----CChhHHHHHHHHHHhCCC---CCChHhHHHHHHHHHhcCC---
Q 002666 210 LMLNLFHQMQELGYEVSVHLFTTLIRVFAR--E----GRVDDALFLLDEMKNNAF---SVDIVLYNVCIDCFGKVGK--- 277 (895)
Q Consensus 210 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~----g~~~~A~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~--- 277 (895)
....+++.+.+.|+..+..++......... . .....|..+|+.|++..+ .++-.++..++.. ..++
T Consensus 80 ~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~ 157 (297)
T PF13170_consen 80 EVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEE 157 (297)
T ss_pred HHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHH
Confidence 344556666666655554443332222211 1 123455666666665532 2233333333322 2222
Q ss_pred -hhhHHHHHHHHHHCCCCCC
Q 002666 278 -VDMAWKFFHEMKAQGVAPD 296 (895)
Q Consensus 278 -~~~A~~~~~~~~~~g~~p~ 296 (895)
.+.++.+|+.+.+.|+..+
T Consensus 158 l~~~~E~~Y~~L~~~~f~kg 177 (297)
T PF13170_consen 158 LAERMEQCYQKLADAGFKKG 177 (297)
T ss_pred HHHHHHHHHHHHHHhCCCCC
Confidence 2344555555555555433
No 319
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=88.12 E-value=32 Score=34.91 Aligned_cols=84 Identities=15% Similarity=-0.001 Sum_probs=41.8
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHc----cCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHc----c
Q 002666 588 KAGFAHETDQLFYAMKKQGCVLDTRAYNTVVDGFCK----SGKVNKAYQLLEEMKTKGHYPTVVTYGSVIDGLAK----I 659 (895)
Q Consensus 588 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~ 659 (895)
..+.+..+...+......+ +......+...|.. ..+..+|.+++..+.+.|.. .....+...|.. .
T Consensus 53 ~~~~~~~a~~~~~~a~~~~---~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~~---~a~~~lg~~~~~G~gv~ 126 (292)
T COG0790 53 YPPDYAKALKSYEKAAELG---DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGLA---EALFNLGLMYANGRGVP 126 (292)
T ss_pred ccccHHHHHHHHHHhhhcC---ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcccH---HHHHhHHHHHhcCCCcc
Confidence 3445566666666555532 22333333333332 23456666666666555422 222233333433 3
Q ss_pred CCHHHHHHHHHHHHHcCC
Q 002666 660 DRLDEAYMLFEEAKSKGI 677 (895)
Q Consensus 660 ~~~~~A~~~~~~~~~~~~ 677 (895)
.+..+|..+|.++.+.|.
T Consensus 127 ~d~~~A~~~~~~Aa~~g~ 144 (292)
T COG0790 127 LDLVKALKYYEKAAKLGN 144 (292)
T ss_pred cCHHHHHHHHHHHHHcCC
Confidence 366666666666666653
No 320
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=87.92 E-value=6.4 Score=36.30 Aligned_cols=72 Identities=15% Similarity=0.074 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCHhhHHHHHHHHHhcCCHHHH
Q 002666 803 TEANGLFERFKENGGVPDSACYNAMMEGLSNANRAMDAYTLFEETRRK---GFNIHTKTCVILLDALHKAECLEQA 875 (895)
Q Consensus 803 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A 875 (895)
+.|.+.|-.+...+..-++.....|+.-|. ..+.++|+.++-++++. +..+++..+..|+.+|.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 455555555554444334555555544443 34555555555555544 1134455555566666666655555
No 321
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=87.77 E-value=1.2 Score=29.32 Aligned_cols=26 Identities=19% Similarity=0.227 Sum_probs=18.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCC
Q 002666 826 AMMEGLSNANRAMDAYTLFEETRRKG 851 (895)
Q Consensus 826 ~l~~~~~~~g~~~~A~~~~~~~~~~~ 851 (895)
.|+.+|...|+.+.|++++++++..|
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 46777777777777777777777554
No 322
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=87.75 E-value=5.3 Score=35.96 Aligned_cols=108 Identities=19% Similarity=0.199 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCC-------HHHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHhcC
Q 002666 697 IDEAYLIMEELMQKGLTPNAYTWNCLLDALVK---AEE-------ISEAFVCFQSMKDLKCTPNH-VTYSIIINGLCRVR 765 (895)
Q Consensus 697 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~-------~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g 765 (895)
++.|.+.++.....+ +.|...++.-+.++.. ... +++|+.-|++.+. +.|+. .++..+..+|...+
T Consensus 7 FE~ark~aea~y~~n-P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~--I~P~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN-PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALK--INPNKHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHHHH
Confidence 456666666644422 2255554444434332 222 3444455555555 34544 56666666665443
Q ss_pred C-----------HhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 002666 766 K-----------FNKAFVFWQEMQKQGFKPNTITYTTMISGLAKAGNITEANGLFERFKEN 815 (895)
Q Consensus 766 ~-----------~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 815 (895)
. +++|.+.|+++.+ ..|+...|+.-+... ++|-++..++.+.
T Consensus 84 ~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~------~kap~lh~e~~~~ 136 (186)
T PF06552_consen 84 FLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMA------AKAPELHMEIHKQ 136 (186)
T ss_dssp HH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHH------HTHHHHHHHHHHS
T ss_pred hhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHH------HhhHHHHHHHHHH
Confidence 2 3444444444444 456666665555433 3455555555544
No 323
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=87.35 E-value=1 Score=27.27 Aligned_cols=27 Identities=7% Similarity=0.079 Sum_probs=14.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 002666 824 YNAMMEGLSNANRAMDAYTLFEETRRK 850 (895)
Q Consensus 824 ~~~l~~~~~~~g~~~~A~~~~~~~~~~ 850 (895)
+..++.++.+.|++++|.+.|+++++.
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 334555555555555555555555544
No 324
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=87.09 E-value=8.4 Score=33.47 Aligned_cols=93 Identities=14% Similarity=0.062 Sum_probs=59.7
Q ss_pred HhcCCHhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 002666 762 CRVRKFNKAFVFWQEMQKQGFKPNTI-TYTTMISGLAKAGNITEANGLFERFKENGGVPDSACYNAMMEGLSNANRAMDA 840 (895)
Q Consensus 762 ~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 840 (895)
...++.+++..+++.|.- +.|+.. .-..-+..+...|++++|.++++++.+.+.. .+..-..++.++...|+. .=
T Consensus 21 L~~~d~~D~e~lLdALrv--LrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~-~p~~kAL~A~CL~al~Dp-~W 96 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRV--LRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGA-PPYGKALLALCLNAKGDA-EW 96 (153)
T ss_pred HhcCCHHHHHHHHHHHHH--hCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCC-chHHHHHHHHHHHhcCCh-HH
Confidence 457899999999998875 566643 2222344567889999999999999874322 133333344445555654 35
Q ss_pred HHHHHHHHHCCCCCCHhh
Q 002666 841 YTLFEETRRKGFNIHTKT 858 (895)
Q Consensus 841 ~~~~~~~~~~~~~~~~~~ 858 (895)
..+-.++++.+-+++...
T Consensus 97 r~~A~~~le~~~~~~a~~ 114 (153)
T TIGR02561 97 HVHADEVLARDADADAVA 114 (153)
T ss_pred HHHHHHHHHhCCCHhHHH
Confidence 566667777765555543
No 325
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=86.75 E-value=5.9 Score=33.54 Aligned_cols=67 Identities=9% Similarity=0.150 Sum_probs=44.8
Q ss_pred CCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 002666 783 KPNTITYTTMISGLAKAG---NITEANGLFERFKENGGVP--DSACYNAMMEGLSNANRAMDAYTLFEETRRK 850 (895)
Q Consensus 783 ~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 850 (895)
.++..+--.+.+++.+.. +..+.+.+++.+.+. -.| +..+...|+-++++.+++++++++++.+++.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~-~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKS-AHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhh-cCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 455666666677766655 445566677777752 233 4556667777788888888888888777765
No 326
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=86.28 E-value=14 Score=35.19 Aligned_cols=48 Identities=17% Similarity=0.114 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHCCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 002666 804 EANGLFERFKENGGVP-----DSACYNAMMEGLSNANRAMDAYTLFEETRRKG 851 (895)
Q Consensus 804 ~A~~~~~~~~~~~~~p-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 851 (895)
.|.+.|++..+....| +......++....+.|+.++|.++|.+++..+
T Consensus 143 ~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 143 KALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 3445555554432222 12344455556666777777777777766653
No 327
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=85.84 E-value=1.8 Score=28.07 Aligned_cols=27 Identities=22% Similarity=0.306 Sum_probs=16.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002666 823 CYNAMMEGLSNANRAMDAYTLFEETRR 849 (895)
Q Consensus 823 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 849 (895)
+++.|+..|...|++++|..++++++.
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 455666666666666666666665543
No 328
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.59 E-value=33 Score=32.45 Aligned_cols=20 Identities=15% Similarity=0.414 Sum_probs=11.8
Q ss_pred HhcCChhHHHHHHHHhhhCC
Q 002666 447 CKAQKLDEAFSIFEGMDHKT 466 (895)
Q Consensus 447 ~~~g~~~~A~~~~~~~~~~~ 466 (895)
...+++.+|+++|+++....
T Consensus 165 a~leqY~~Ai~iyeqva~~s 184 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSS 184 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 34566666666666665543
No 329
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=85.37 E-value=52 Score=34.50 Aligned_cols=65 Identities=12% Similarity=0.062 Sum_probs=46.2
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC---ChHhHHHHHHHHHhcCChhhHHHHHHHHHH
Q 002666 226 SVHLFTTLIRVFAREGRVDDALFLLDEMKNNAFSV---DIVLYNVCIDCFGKVGKVDMAWKFFHEMKA 290 (895)
Q Consensus 226 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 290 (895)
...++..++..+.+.|.++.|...+.++...+... .......-+..+...|+..+|...+++...
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44677788888888888888888888877643211 334444556677778888888888877776
No 330
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.25 E-value=20 Score=38.84 Aligned_cols=154 Identities=11% Similarity=0.114 Sum_probs=104.3
Q ss_pred HHccCCcchHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCChhHH
Q 002666 132 MAVSKNFEPLEEILGEMSLAGIGPTNNTCIELVVSCVKSKMLREAFDIIQTMRKFKFRPAFTAYTTLIGALATVRESNLM 211 (895)
Q Consensus 132 l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 211 (895)
+.-.|+++.|..++..+. ......++.-+.++|..++|+++ .+|..- -.....+.|+++.|
T Consensus 596 ~vmrrd~~~a~~vLp~I~-------k~~rt~va~Fle~~g~~e~AL~~---------s~D~d~---rFelal~lgrl~iA 656 (794)
T KOG0276|consen 596 LVLRRDLEVADGVLPTIP-------KEIRTKVAHFLESQGMKEQALEL---------STDPDQ---RFELALKLGRLDIA 656 (794)
T ss_pred HhhhccccccccccccCc-------hhhhhhHHhHhhhccchHhhhhc---------CCChhh---hhhhhhhcCcHHHH
Confidence 344678887776654332 23445677777788888888765 233221 12223467888888
Q ss_pred HHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHC
Q 002666 212 LNLFHQMQELGYEVSVHLFTTLIRVFAREGRVDDALFLLDEMKNNAFSVDIVLYNVCIDCFGKVGKVDMAWKFFHEMKAQ 291 (895)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 291 (895)
.++..+.. +..-|..|..+....|++..|.++|.+... |..|+-.+...|+-+....+-....+.
T Consensus 657 ~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~ 721 (794)
T KOG0276|consen 657 FDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQ 721 (794)
T ss_pred HHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhh
Confidence 77655432 556799999999999999999999987665 446666777778877777777777776
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHhh
Q 002666 292 GVAPDDVTYTSMIGVLCKSKRLEEAVAMFEQMDR 325 (895)
Q Consensus 292 g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 325 (895)
|. +..++ .+|...|+++++.+++.+-.+
T Consensus 722 g~--~N~AF----~~~~l~g~~~~C~~lLi~t~r 749 (794)
T KOG0276|consen 722 GK--NNLAF----LAYFLSGDYEECLELLISTQR 749 (794)
T ss_pred cc--cchHH----HHHHHcCCHHHHHHHHHhcCc
Confidence 63 23333 357788999999988876543
No 331
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=84.94 E-value=58 Score=34.72 Aligned_cols=99 Identities=10% Similarity=0.121 Sum_probs=69.9
Q ss_pred CCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh--cCCHhHHHHHHHHHHHC-CCCCCHHH
Q 002666 713 TPNAYTW-NCLLDALVKAEEISEAFVCFQSMKDLKCTPNHVTYSIIINGLCR--VRKFNKAFVFWQEMQKQ-GFKPNTIT 788 (895)
Q Consensus 713 ~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~-~~~p~~~~ 788 (895)
.|+..++ +.++..+...|-.++|...+..+.... +|....|..++..-.. .-+...+.++|+.|... | .|+..
T Consensus 456 ~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lp-p~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg--~d~~l 532 (568)
T KOG2396|consen 456 GADSVTLKSKYLDWAYESGGYKKARKVYKSLQELP-PFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG--ADSDL 532 (568)
T ss_pred CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCC-CccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC--CChHH
Confidence 3555544 356777778888899999999888732 5566666666653221 12377788899988876 5 67788
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002666 789 YTTMISGLAKAGNITEANGLFERFKE 814 (895)
Q Consensus 789 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 814 (895)
|...+..-...|..+-+-.++.++.+
T Consensus 533 w~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 533 WMDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred HHHHHHhhccCCCcccccHHHHHHHH
Confidence 88877776688888888888777765
No 332
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=84.93 E-value=1.6 Score=26.69 Aligned_cols=26 Identities=27% Similarity=0.300 Sum_probs=11.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002666 789 YTTMISGLAKAGNITEANGLFERFKE 814 (895)
Q Consensus 789 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 814 (895)
|..+...+...|++++|.+.|++.++
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 33444444444444444444444443
No 333
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=84.71 E-value=58 Score=34.51 Aligned_cols=43 Identities=23% Similarity=0.341 Sum_probs=30.3
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhH
Q 002666 517 FKHGRKEDGHKIYKEMVQRGCSPDLMLLNTYMDCVFKAGETEK 559 (895)
Q Consensus 517 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 559 (895)
...+.++...+++..+...|.......++.....|++.|....
T Consensus 28 f~~~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~tq~ 70 (696)
T KOG2471|consen 28 FNNSEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCTQH 70 (696)
T ss_pred cCCcchHHHHHHHHHHHhccccccceeeehhhHHHHhcccchh
Confidence 4466788888888888777766666667777777777766544
No 334
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=84.62 E-value=60 Score=34.64 Aligned_cols=180 Identities=11% Similarity=0.092 Sum_probs=98.1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHH
Q 002666 226 SVHLFTTLIRVFAREGRVDDALFLLDEMKNNAFSVDIVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGVAPDDVTYTSMIG 305 (895)
Q Consensus 226 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~ 305 (895)
+......++..+....+..-...+..+|+..| .+-..|..++.+|... ..++-..+++++.+..+. |.+.-..|..
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 44445555556655556666666666666553 3444555666666655 445566666666665433 3333344444
Q ss_pred HHHhcCCHhHHHHHHHHHhhCCCCC-----CHHhHHHHHHHHHccCCHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHh
Q 002666 306 VLCKSKRLEEAVAMFEQMDRNREVP-----CAYAYNTMIMGYGSVGKFDEAFSLFERLKQK-GCIPSVIAYNSLLTCLGK 379 (895)
Q Consensus 306 ~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~ 379 (895)
.|- .++.+.+..+|.++...-++. -...|..|... -..+.+....+...+... |...-.+.+..+-.-|..
T Consensus 141 ~yE-kik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 141 KYE-KIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHH-HhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 433 366666766666665432210 11234433321 123455555555555443 222334455555566667
Q ss_pred cCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 002666 380 KGRVTEAMKIFEAMKKDARPNNTTYNVLIDMLC 412 (895)
Q Consensus 380 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 412 (895)
..++++|++++..+.+....|..+...++..+.
T Consensus 218 ~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lR 250 (711)
T COG1747 218 NENWTEAIRILKHILEHDEKDVWARKEIIENLR 250 (711)
T ss_pred ccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHH
Confidence 777777777777777766666666666665544
No 335
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=84.37 E-value=5.9 Score=31.23 Aligned_cols=61 Identities=16% Similarity=0.151 Sum_probs=41.3
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHH
Q 002666 347 KFDEAFSLFERLKQKGCIPSVIAYNSLLTCLGKKGRVTEAMKIFEAMKKDARPNNTTYNVL 407 (895)
Q Consensus 347 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 407 (895)
+.-++.+-++.+...+..|++....+-++++.+.+|+..|+++|+.++.....+...|..+
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~ 82 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYI 82 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHH
Confidence 3445666667777777778888888888888888888888888887764433333344443
No 336
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=84.03 E-value=53 Score=33.88 Aligned_cols=79 Identities=13% Similarity=0.032 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHH
Q 002666 349 DEAFSLFERLKQKGCIPSVIAYNSLLTCLGKKGRVTEAMKIFEAMKKDARPNNTTYNVLIDMLCK---AGNFEDALKFRD 425 (895)
Q Consensus 349 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~ 425 (895)
+.-+.+++++++.++ .+......++..+.+..+.++..+.++++....|.+...|...+..... .-.++....+|.
T Consensus 48 E~klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~ 126 (321)
T PF08424_consen 48 ERKLSILERALKHNP-DSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYE 126 (321)
T ss_pred HHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 455566666666643 3556666677777777777777777777777777777777776665544 234555555555
Q ss_pred HHH
Q 002666 426 AMK 428 (895)
Q Consensus 426 ~~~ 428 (895)
+.+
T Consensus 127 ~~l 129 (321)
T PF08424_consen 127 KCL 129 (321)
T ss_pred HHH
Confidence 443
No 337
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=83.80 E-value=10 Score=34.96 Aligned_cols=74 Identities=8% Similarity=-0.005 Sum_probs=51.8
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 002666 768 NKAFVFWQEMQKQGFKPNTITYTTMISGLAKAGNITEANGLFERFKEN---GGVPDSACYNAMMEGLSNANRAMDAYT 842 (895)
Q Consensus 768 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~A~~ 842 (895)
++|...|-.+...+.--++.....|+. |...-+.++|..++.++++. +-.+|+..+..|+..+.+.|+++.|.-
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAt-yY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AYi 199 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALAT-YYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAYI 199 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHH-HHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhhh
Confidence 677777777776655545555544444 44466788888888888764 224578888888888888888888764
No 338
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=83.79 E-value=22 Score=34.44 Aligned_cols=57 Identities=11% Similarity=0.021 Sum_probs=38.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHH-------HHHHHHHHHhcCCHhHHHHHHHHH
Q 002666 721 CLLDALVKAEEISEAFVCFQSMKDLKCTPNHVT-------YSIIINGLCRVRKFNKAFVFWQEM 777 (895)
Q Consensus 721 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-------~~~l~~~~~~~g~~~~A~~~~~~~ 777 (895)
-+++-..+.+++++|+..+.+++..|...+..+ ...+...|...|++..--+.....
T Consensus 8 e~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~s 71 (421)
T COG5159 8 ELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSS 71 (421)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhh
Confidence 355566778888999999998888877666533 334556677777766655554433
No 339
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=83.32 E-value=28 Score=29.74 Aligned_cols=70 Identities=13% Similarity=0.175 Sum_probs=45.4
Q ss_pred CCCHHHHHHHHHHHHhcCC---HhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 002666 748 TPNHVTYSIIINGLCRVRK---FNKAFVFWQEMQKQGFKPN--TITYTTMISGLAKAGNITEANGLFERFKENGGVPD 820 (895)
Q Consensus 748 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 820 (895)
.+...+-..+.+++.+..+ ..+.+.+++...+. -.|+ ......|.-++.+.|++++++++.+.+++ ..||
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~-~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~--~e~~ 103 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKS-AHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE--TEPN 103 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhh-cCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh--hCCC
Confidence 4566666677777777654 45566777777752 2232 23334455567888888888888888887 5554
No 340
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.83 E-value=91 Score=35.34 Aligned_cols=76 Identities=18% Similarity=0.209 Sum_probs=39.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 002666 374 LTCLGKKGRVTEAMKIFEAMKKDARP--NNTTYNVLIDMLCKAGNFEDALKFRDAMKEAGLFPNVMTVNIMVDRLCKAQK 451 (895)
Q Consensus 374 ~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 451 (895)
+..+.+.+.+++|++.-+......+. -.......+..+...|++++|-...-.|... +...|...+..+...++
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~~~ 438 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAELDQ 438 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccccc
Confidence 34455666666666665544433222 2334555566666666666666666665542 34444444444444444
Q ss_pred hh
Q 002666 452 LD 453 (895)
Q Consensus 452 ~~ 453 (895)
..
T Consensus 439 l~ 440 (846)
T KOG2066|consen 439 LT 440 (846)
T ss_pred cc
Confidence 33
No 341
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=82.59 E-value=1e+02 Score=35.68 Aligned_cols=225 Identities=12% Similarity=0.052 Sum_probs=107.4
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCH-------HhHHHHHH-HHHccCChHHHHHHHHHHHHC----CCCCCHHhHHHHHH
Q 002666 587 VKAGFAHETDQLFYAMKKQGCVLDT-------RAYNTVVD-GFCKSGKVNKAYQLLEEMKTK----GHYPTVVTYGSVID 654 (895)
Q Consensus 587 ~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~----~~~p~~~~~~~l~~ 654 (895)
....++.+|..+..++...-..|+. ..++.+-. .....|++++|.++.+..... -..+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 3455666666666655443111111 12222211 233467788888877776654 11233445555666
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCcCHHHHH---HH--HHHHHccCC--HHHHHHHHHHHHHC--CCCC----CHHHHHH
Q 002666 655 GLAKIDRLDEAYMLFEEAKSKGIELNTVIYS---SL--IDGFGKVGR--IDEAYLIMEELMQK--GLTP----NAYTWNC 721 (895)
Q Consensus 655 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~---~l--~~~~~~~g~--~~~A~~~~~~~~~~--~~~p----~~~~~~~ 721 (895)
+..-.|++++|..+.++..+..-..+...+. .+ ...+..+|. +.+....+...... ...| -..+...
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 6777788888888777766542222333222 22 223455562 22333333333221 1111 1223333
Q ss_pred HHHHHHh-cCCHHHHHHHHHHHHhcCCCCCH--HHHHHHHHHHHhcCCHhHHHHHHHHHHHCCC----CCCHHHHHHHHH
Q 002666 722 LLDALVK-AEEISEAFVCFQSMKDLKCTPNH--VTYSIIINGLCRVRKFNKAFVFWQEMQKQGF----KPNTITYTTMIS 794 (895)
Q Consensus 722 l~~~~~~-~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~p~~~~~~~l~~ 794 (895)
+..++.+ .+...+|..-++--......|-. ..+..|+.+....|++++|...+.++..... .++..+-...+.
T Consensus 586 ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~ 665 (894)
T COG2909 586 LLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVK 665 (894)
T ss_pred HHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhh
Confidence 4444443 11222222222222221211211 1223677778888888888888887765422 222223333333
Q ss_pred H--HHhcCCHHHHHHHHHH
Q 002666 795 G--LAKAGNITEANGLFER 811 (895)
Q Consensus 795 ~--~~~~g~~~~A~~~~~~ 811 (895)
. -...|+.++|.....+
T Consensus 666 ~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 666 LILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHhcccCCHHHHHHHHHh
Confidence 3 3456788877776655
No 342
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=82.50 E-value=3.4 Score=25.22 Aligned_cols=28 Identities=14% Similarity=0.141 Sum_probs=18.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 002666 823 CYNAMMEGLSNANRAMDAYTLFEETRRK 850 (895)
Q Consensus 823 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 850 (895)
+|..++..|...|++++|...|++.++.
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4556666666667777777666666553
No 343
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=82.36 E-value=98 Score=35.37 Aligned_cols=29 Identities=14% Similarity=0.159 Sum_probs=15.2
Q ss_pred hhHHHHHHHHhh---cCCHHHHHHHHHHHHhC
Q 002666 472 VTFCSLIDGLGK---NGRVDDAYKFYEKMLDT 500 (895)
Q Consensus 472 ~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~ 500 (895)
.-+..++..|.+ ..+..+|.++|--+...
T Consensus 325 ln~arLI~~Y~~~F~~td~~~Al~Y~~li~~~ 356 (613)
T PF04097_consen 325 LNFARLIGQYTRSFEITDPREALQYLYLICLF 356 (613)
T ss_dssp --HHHHHHHHHHTTTTT-HHHHHHHHHGGGGS
T ss_pred cCHHHHHHHHHHHHhccCHHHHHHHHHHHHHc
Confidence 345556666654 34666777666655443
No 344
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=82.11 E-value=2 Score=24.52 Aligned_cols=17 Identities=18% Similarity=0.159 Sum_probs=6.9
Q ss_pred HHHHHHhcCCHHHHHHH
Q 002666 827 MMEGLSNANRAMDAYTL 843 (895)
Q Consensus 827 l~~~~~~~g~~~~A~~~ 843 (895)
++.++...|++++|..+
T Consensus 7 la~~~~~~G~~~eA~~~ 23 (26)
T PF07721_consen 7 LARALLAQGDPDEAERL 23 (26)
T ss_pred HHHHHHHcCCHHHHHHH
Confidence 33344444444444333
No 345
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=81.95 E-value=1.9 Score=26.10 Aligned_cols=13 Identities=15% Similarity=0.685 Sum_probs=4.8
Q ss_pred cCCHHHHHHHHHH
Q 002666 414 AGNFEDALKFRDA 426 (895)
Q Consensus 414 ~g~~~~A~~~~~~ 426 (895)
.|++++|.+.|++
T Consensus 13 ~g~~~~A~~~~~~ 25 (33)
T PF13174_consen 13 LGDYDEAIEYFQR 25 (33)
T ss_dssp HCHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHH
Confidence 3333333333333
No 346
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=81.76 E-value=3.7 Score=26.49 Aligned_cols=28 Identities=21% Similarity=0.234 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002666 787 ITYTTMISGLAKAGNITEANGLFERFKE 814 (895)
Q Consensus 787 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 814 (895)
.+++.|...|...|++++|..+++++++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4677888888888888888888888765
No 347
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=81.76 E-value=35 Score=29.83 Aligned_cols=52 Identities=12% Similarity=0.116 Sum_probs=33.1
Q ss_pred hcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 002666 379 KKGRVTEAMKIFEAMKKDARPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEA 430 (895)
Q Consensus 379 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 430 (895)
..++.+++..++..+.-..|.....-..-+..+...|+|.+|.++|+++.+.
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 3566666666666665555555555555556666667777777777776654
No 348
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.69 E-value=1e+02 Score=35.03 Aligned_cols=102 Identities=14% Similarity=0.102 Sum_probs=58.6
Q ss_pred HHHHHhcCChhhHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHcc
Q 002666 269 IDCFGKVGKVDMAWKFFHEMKAQGVAP---DDVTYTSMIGVLCKSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSV 345 (895)
Q Consensus 269 ~~~~~~~g~~~~A~~~~~~~~~~g~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 345 (895)
++.+.+.+.+++|+...+..... .| -.......|..+...|++++|-...-.|... +...|...+..+...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccc
Confidence 44556777788888776654432 33 2335667777788888888888887777763 455555555555555
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 002666 346 GKFDEAFSLFERLKQKGCIPSVIAYNSLLTCLGK 379 (895)
Q Consensus 346 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 379 (895)
++......+ +.......+...|..++..+..
T Consensus 437 ~~l~~Ia~~---lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 437 DQLTDIAPY---LPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred cccchhhcc---CCCCCcccCchHHHHHHHHHHH
Confidence 544332221 1111111345566666655554
No 349
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=81.38 E-value=8 Score=30.92 Aligned_cols=59 Identities=15% Similarity=0.202 Sum_probs=35.9
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 002666 350 EAFSLFERLKQKGCIPSVIAYNSLLTCLGKKGRVTEAMKIFEAMKKDARPNNTTYNVLI 408 (895)
Q Consensus 350 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 408 (895)
+..+-++.+...+..|++.+....++++.+.+++..|+++|+.++....+....|..++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~l 86 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYIL 86 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHH
Confidence 55566666666777777777777888888888888888888777654333333444443
No 350
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.18 E-value=41 Score=33.35 Aligned_cols=98 Identities=17% Similarity=0.223 Sum_probs=49.3
Q ss_pred CHHhHHHHHHHHHccCCHHHHHHHHHHHHHcC---CCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 002666 645 TVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKG---IELNTVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNAYTWNC 721 (895)
Q Consensus 645 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 721 (895)
+..+...++..-....+++.+..++-+..... ..++... ...++.+. .-++++++.++..=++.|+-||..+++.
T Consensus 63 s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf~~c~ 140 (418)
T KOG4570|consen 63 SSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQFTFCL 140 (418)
T ss_pred ceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH-HHHHHHHH-ccChHHHHHHHhCcchhccccchhhHHH
Confidence 34444444544444556666666655554320 0111111 11222222 2345566666665566666666666666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh
Q 002666 722 LLDALVKAEEISEAFVCFQSMKD 744 (895)
Q Consensus 722 l~~~~~~~g~~~~A~~~~~~~~~ 744 (895)
|++.+.+.+++.+|..+...|..
T Consensus 141 l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 141 LMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred HHHHHHhcccHHHHHHHHHHHHH
Confidence 66666666666666665555544
No 351
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=80.73 E-value=1.9e+02 Score=37.72 Aligned_cols=152 Identities=16% Similarity=0.105 Sum_probs=99.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCC--CCChHhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 002666 232 TLIRVFAREGRVDDALFLLDEMKNNAF--SVDIVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGVAPDDVTYTSMIGVLCK 309 (895)
Q Consensus 232 ~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~ 309 (895)
.++.+-.+++.+..|...++.-..... ......|-.+...|...+++|....+...-.. .|+ .+ .-|-....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~~s--l~-~qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA---DPS--LY-QQILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---Ccc--HH-HHHHHHHh
Confidence 456677789999999999988311100 12233455556689999999988888764222 222 22 34445678
Q ss_pred cCCHhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHH-HHHHHhcCCHHHHHH
Q 002666 310 SKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLFERLKQKGCIPSVIAYNSL-LTCLGKKGRVTEAMK 388 (895)
Q Consensus 310 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~A~~ 388 (895)
.|++..|...|+++.+.++. ...+++.++..-...|.++...-..+-....- .+....++++ ..+-.+.++++....
T Consensus 1462 ~g~~~da~~Cye~~~q~~p~-~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~ 1539 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKDPD-KEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLES 1539 (2382)
T ss_pred hccHHHHHHHHHHhhcCCCc-cccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhh
Confidence 99999999999999988764 57788888877778888888877666555432 2233333333 233356677766665
Q ss_pred HHH
Q 002666 389 IFE 391 (895)
Q Consensus 389 ~~~ 391 (895)
...
T Consensus 1540 ~l~ 1542 (2382)
T KOG0890|consen 1540 YLS 1542 (2382)
T ss_pred hhh
Confidence 544
No 352
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=80.21 E-value=45 Score=30.10 Aligned_cols=101 Identities=18% Similarity=0.214 Sum_probs=53.1
Q ss_pred HHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHCC
Q 002666 213 NLFHQMQELGYEVSVHLFTTLIRVFAREGRVDDALFLLDEMKNNAFSVDIVLYNVCIDCFGKVGKVDMAWKFFHEMKAQG 292 (895)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 292 (895)
++.+.+.+.+.+++...+..++..+.+.|++....+++. .++-+|....-..+ +...+.+..+.++--+|..+
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq----~~Vi~DSk~lA~~L--Ls~~~~~~~~~Ql~lDMLkR- 87 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQ----YHVIPDSKPLACQL--LSLGNQYPPAYQLGLDMLKR- 87 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHh----hcccCCcHHHHHHH--HHhHccChHHHHHHHHHHHH-
Confidence 445555566666777777777777777776555444433 33333333222111 11223334455554455443
Q ss_pred CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 002666 293 VAPDDVTYTSMIGVLCKSKRLEEAVAMFEQM 323 (895)
Q Consensus 293 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 323 (895)
=...+..++..+...|++-+|+++.+..
T Consensus 88 ---L~~~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 88 ---LGTAYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred ---hhhhHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 1113445666677777777777777664
No 353
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.16 E-value=12 Score=36.87 Aligned_cols=34 Identities=18% Similarity=0.132 Sum_probs=19.0
Q ss_pred cCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 002666 151 AGIGPTNNTCIELVVSCVKSKMLREAFDIIQTMR 184 (895)
Q Consensus 151 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 184 (895)
.|.+.+..+...++..-......+++..++-+++
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlR 91 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLR 91 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHh
Confidence 4555555555555555555555666665555554
No 354
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=80.02 E-value=1.2e+02 Score=34.76 Aligned_cols=45 Identities=11% Similarity=0.198 Sum_probs=24.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc
Q 002666 404 YNVLIDMLCKAGNFEDALKFRDAMKEAGLFPNVMTVNIMVDRLCKA 449 (895)
Q Consensus 404 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 449 (895)
.-.+|-.+.++|++++|.++..+.... .......+...+..+...
T Consensus 114 ~Wa~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 114 IWALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASS 158 (613)
T ss_dssp HHHHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTT
T ss_pred cHHHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhC
Confidence 345566667777777777777444332 223334455555555543
No 355
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=79.22 E-value=6.4 Score=42.05 Aligned_cols=152 Identities=15% Similarity=0.096 Sum_probs=99.0
Q ss_pred CCCHHHHHHHHHHHHhc--CCHhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHH
Q 002666 294 APDDVTYTSMIGVLCKS--KRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLFERLKQKGCIPSVIAYN 371 (895)
Q Consensus 294 ~p~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 371 (895)
-|+..+..+++.-.... ..-+-|-.++..|.. ...|--...|.-+.-+-..|+...|...+..+....+....+...
T Consensus 568 ~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~-~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v 646 (886)
T KOG4507|consen 568 MPDDHARKILLSRINNYTIPEEEIGSFLFHAINK-PNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLV 646 (886)
T ss_pred CchHHHHHHHHHHHhcccCcHHHHHHHHHHHhcC-CCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHH
Confidence 35666666555443322 222334445544443 222333344444444456788888888888877655444555666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 002666 372 SLLTCLGKKGRVTEAMKIFEAMKKDARPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEAGLFPNVMTVNIMVDRLC 447 (895)
Q Consensus 372 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 447 (895)
.|.+.+.+.|-...|-.++.+........+-++..+.+++....+.+.|++.|++..+... .+...-+.+...-|
T Consensus 647 ~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~-~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 647 NLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLTT-KCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCC-CChhhHHHHHHHHH
Confidence 7777788888888888888887776677777888888999888999999998888887642 35555666665555
No 356
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.14 E-value=40 Score=36.63 Aligned_cols=150 Identities=11% Similarity=0.028 Sum_probs=75.7
Q ss_pred hcCCHhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 002666 309 KSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLFERLKQKGCIPSVIAYNSLLTCLGKKGRVTEAMK 388 (895)
Q Consensus 309 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 388 (895)
-.|+++.|..++..+. ....+.++..+.++|..++|+++- +|..-.. ....+.|+++.|.+
T Consensus 598 mrrd~~~a~~vLp~I~-------k~~rt~va~Fle~~g~~e~AL~~s---------~D~d~rF---elal~lgrl~iA~~ 658 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIP-------KEIRTKVAHFLESQGMKEQALELS---------TDPDQRF---ELALKLGRLDIAFD 658 (794)
T ss_pred hhccccccccccccCc-------hhhhhhHHhHhhhccchHhhhhcC---------CChhhhh---hhhhhcCcHHHHHH
Confidence 3456666555443332 223444555556666666555431 1221111 22345666666666
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhhhCCCC
Q 002666 389 IFEAMKKDARPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEAGLFPNVMTVNIMVDRLCKAQKLDEAFSIFEGMDHKTCT 468 (895)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 468 (895)
+..+.. +..-|..|..+....+++..|.+.|.+..+ |..|+-.+...|+-+....+-....+.|..
T Consensus 659 la~e~~-----s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~ 724 (794)
T KOG0276|consen 659 LAVEAN-----SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGKN 724 (794)
T ss_pred HHHhhc-----chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhccc
Confidence 654432 344466777777777777777776665543 333444455555555444444444444321
Q ss_pred CChhhHHHHHHHHhhcCCHHHHHHHHHHH
Q 002666 469 PDAVTFCSLIDGLGKNGRVDDAYKFYEKM 497 (895)
Q Consensus 469 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 497 (895)
| ....+|...|+++++.+++.+-
T Consensus 725 -N-----~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 725 -N-----LAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred -c-----hHHHHHHHcCCHHHHHHHHHhc
Confidence 1 1223455567777666665544
No 357
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=78.88 E-value=15 Score=29.10 Aligned_cols=47 Identities=9% Similarity=0.069 Sum_probs=31.3
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002666 768 NKAFVFWQEMQKQGFKPNTITYTTMISGLAKAGNITEANGLFERFKE 814 (895)
Q Consensus 768 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 814 (895)
-++.+-++.+....+.|++.+..+.+++|.+.+++.-|+++++-+..
T Consensus 24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~ 70 (103)
T cd00923 24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKD 70 (103)
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 34555555555556677777777777777777777777777776654
No 358
>PRK09687 putative lyase; Provisional
Probab=78.77 E-value=76 Score=31.88 Aligned_cols=232 Identities=12% Similarity=0.097 Sum_probs=132.6
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCCh----HHHHHHHHHHHHCCCCCCHHhH
Q 002666 574 PDVQSYSILIHGLVKAGFAHETDQLFYAMKKQGCVLDTRAYNTVVDGFCKSGKV----NKAYQLLEEMKTKGHYPTVVTY 649 (895)
Q Consensus 574 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----~~A~~~~~~~~~~~~~p~~~~~ 649 (895)
+|.......+..+...|. +++...+..+.. .+|...-...+.++.+.|+. .++...+..+... .++..+.
T Consensus 35 ~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~---~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR 108 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGG-QDVFRLAIELCS---SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVR 108 (280)
T ss_pred CCHHHHHHHHHHHHhcCc-chHHHHHHHHHh---CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHH
Confidence 355455555555555553 233333333433 23555555566666666653 4567777766443 3455555
Q ss_pred HHHHHHHHccCCH-----HHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 002666 650 GSVIDGLAKIDRL-----DEAYMLFEEAKSKGIELNTVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNAYTWNCLLD 724 (895)
Q Consensus 650 ~~l~~~~~~~~~~-----~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 724 (895)
...+.++...+.. ..+...+..... .++..+-...+.++.+.++ ++|+..+-.+++. ++...-..-+.
T Consensus 109 ~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~ 181 (280)
T PRK09687 109 ASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAF 181 (280)
T ss_pred HHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHH
Confidence 5555555544321 223333333332 2355555666777777776 5677777777663 45455555555
Q ss_pred HHHhcC-CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 002666 725 ALVKAE-EISEAFVCFQSMKDLKCTPNHVTYSIIINGLCRVRKFNKAFVFWQEMQKQGFKPNTITYTTMISGLAKAGNIT 803 (895)
Q Consensus 725 ~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 803 (895)
++...+ +.+.+...+..++. .++...-...+.++.+.|. ..|+..+-+..+.+ + .....+.++...|..
T Consensus 182 aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~- 251 (280)
T PRK09687 182 ALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK- 251 (280)
T ss_pred HHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-
Confidence 555543 24567777777774 3566666677778888777 56777777776542 2 234567778888884
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 002666 804 EANGLFERFKENGGVPDSACYNAMMEG 830 (895)
Q Consensus 804 ~A~~~~~~~~~~~~~p~~~~~~~l~~~ 830 (895)
+|+..+.++.+ -.||..+...-.++
T Consensus 252 ~a~p~L~~l~~--~~~d~~v~~~a~~a 276 (280)
T PRK09687 252 TLLPVLDTLLY--KFDDNEIITKAIDK 276 (280)
T ss_pred hHHHHHHHHHh--hCCChhHHHHHHHH
Confidence 78888888886 34565554444433
No 359
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=77.57 E-value=91 Score=32.14 Aligned_cols=78 Identities=14% Similarity=0.042 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhh---cCCHHHHHHHHH
Q 002666 419 DALKFRDAMKEAGLFPNVMTVNIMVDRLCKAQKLDEAFSIFEGMDHKTCTPDAVTFCSLIDGLGK---NGRVDDAYKFYE 495 (895)
Q Consensus 419 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~ 495 (895)
.-+.+++++++.+ +.+...+..++..+.+..+.++..+.++++.... +.+...|...+..... .-.++....+|.
T Consensus 49 ~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~ 126 (321)
T PF08424_consen 49 RKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDVYE 126 (321)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 3344555555442 1233344444555555555555555555555542 1134444444443322 123444444444
Q ss_pred HHH
Q 002666 496 KML 498 (895)
Q Consensus 496 ~~~ 498 (895)
+.+
T Consensus 127 ~~l 129 (321)
T PF08424_consen 127 KCL 129 (321)
T ss_pred HHH
Confidence 443
No 360
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.55 E-value=1.6e+02 Score=34.79 Aligned_cols=26 Identities=31% Similarity=0.604 Sum_probs=17.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHh
Q 002666 230 FTTLIRVFAREGRVDDALFLLDEMKN 255 (895)
Q Consensus 230 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 255 (895)
|..|+..|...|+.++|++++.+...
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhc
Confidence 56666667777777777777766654
No 361
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=77.04 E-value=14 Score=29.56 Aligned_cols=47 Identities=9% Similarity=0.093 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 002666 769 KAFVFWQEMQKQGFKPNTITYTTMISGLAKAGNITEANGLFERFKEN 815 (895)
Q Consensus 769 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 815 (895)
+..+-++.+....+.|++.+..+.+++|.+.+++.-|+++++-+..+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34444455554556667777777777777777777777777666553
No 362
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=76.64 E-value=3.9 Score=23.29 Aligned_cols=24 Identities=17% Similarity=0.050 Sum_probs=20.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHH
Q 002666 857 KTCVILLDALHKAECLEQAAIVGA 880 (895)
Q Consensus 857 ~~~~~l~~~~~~~g~~~~A~~~~~ 880 (895)
.....|+.++...|+.++|+.+..
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 356789999999999999998653
No 363
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=76.43 E-value=18 Score=33.72 Aligned_cols=73 Identities=15% Similarity=0.116 Sum_probs=53.0
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHH
Q 002666 753 TYSIIINGLCRVRKFNKAFVFWQEMQKQGFKPNTITYTTMISGLAKAGNITEANGLFERFKENGGVPD----SACYNAMM 828 (895)
Q Consensus 753 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~ 828 (895)
|.+.-++.+.+.+...+|+...+.-++.+ +.|...-..|.+.+|-.|++++|..-++-+-+ +.|+ ...|..++
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~--l~p~~t~~a~lyr~li 79 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAAT--LSPQDTVGASLYRHLI 79 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhh--cCcccchHHHHHHHHH
Confidence 34455667778899999999988777642 33455666788889999999999998888877 5554 34444444
No 364
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.24 E-value=1.7e+02 Score=34.52 Aligned_cols=115 Identities=14% Similarity=0.146 Sum_probs=63.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcC---CCcCHHHHHHHHHHHHhcCCh--hHHHHHHHHHHhCCCCCChHhHH--
Q 002666 194 AYTTLIGALATVRESNLMLNLFHQMQELG---YEVSVHLFTTLIRVFAREGRV--DDALFLLDEMKNNAFSVDIVLYN-- 266 (895)
Q Consensus 194 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~--~~A~~~~~~~~~~~~~~~~~~~~-- 266 (895)
-|..|+..|...|..++|++++.+..... -..-...+..++.-+-+.+.. +-.+++-+...+.+.......+.
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 37889999999999999999999987732 111122333455555555554 44555444444332111111111
Q ss_pred ----------HHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 002666 267 ----------VCIDCFGKVGKVDMAWKFFHEMKAQGVAPDDVTYTSMIGVLC 308 (895)
Q Consensus 267 ----------~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~ 308 (895)
..+-.|......+-+..+++.+....-.++....+.++..|+
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~ 637 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYL 637 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHH
Confidence 112234455556666666666665544445555555655554
No 365
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=76.16 E-value=13 Score=35.04 Aligned_cols=118 Identities=13% Similarity=0.049 Sum_probs=85.9
Q ss_pred HHHHhcCCHhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCC
Q 002666 759 NGLCRVRKFNKAFVFWQEMQKQGFKPNT-ITYTTMISGLAKAGNITEANGLFERFKENGGVPD-SACYNAMMEGLSNANR 836 (895)
Q Consensus 759 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 836 (895)
+.|...++++.|+..|.+.+. +.|.. .-|..-+-++.+..+++.+..--.+.++ +.|| ......++..+.....
T Consensus 18 nk~f~~k~y~~ai~~y~raI~--~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~ 93 (284)
T KOG4642|consen 18 NKCFIPKRYDDAIDCYSRAIC--INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKG 93 (284)
T ss_pred ccccchhhhchHHHHHHHHHh--cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhcc
Confidence 356677889999998888876 66776 5567777788899999999999999998 7885 5566778888899999
Q ss_pred HHHHHHHHHHHHHC----CCCCCHhhHHHHHHHHHhcCCHHHHHHHHH
Q 002666 837 AMDAYTLFEETRRK----GFNIHTKTCVILLDALHKAECLEQAAIVGA 880 (895)
Q Consensus 837 ~~~A~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 880 (895)
+++|+..+.++... .+++.......|..+-.+.=...++.++.+
T Consensus 94 ~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q 141 (284)
T KOG4642|consen 94 YDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQ 141 (284)
T ss_pred ccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHH
Confidence 99999999988443 334444555555554444434444444333
No 366
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=74.67 E-value=16 Score=33.99 Aligned_cols=58 Identities=19% Similarity=0.294 Sum_probs=38.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002666 372 SLLTCLGKKGRVTEAMKIFEAMKKDARPNNTTYNVLIDMLCKAGNFEDALKFRDAMKE 429 (895)
Q Consensus 372 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 429 (895)
.-+..+.+.+.+.+|+...+.-.+..|.+...-..+++.+|-.|+|++|..-++-.-.
T Consensus 6 ~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~ 63 (273)
T COG4455 6 DTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAAT 63 (273)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhh
Confidence 3344555666677777777666666677777777777777777777777665554443
No 367
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=74.36 E-value=95 Score=30.79 Aligned_cols=136 Identities=10% Similarity=0.154 Sum_probs=81.1
Q ss_pred ChHHHHHHHHHHHh-CCCCcCHHHHHHHHHHHHh-cC-ChhHHHHHHHHHHH-cCCCcCHHHHHHHHHHHHhcCChhHHH
Q 002666 172 MLREAFDIIQTMRK-FKFRPAFTAYTTLIGALAT-VR-ESNLMLNLFHQMQE-LGYEVSVHLFTTLIRVFAREGRVDDAL 247 (895)
Q Consensus 172 ~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~~-~~-~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~ 247 (895)
...+|+.+|+..-. ..+-.|..+...+++.... .+ ....-.++.+-+.. .+..++..+...++..+++.+++..-.
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~ 222 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLF 222 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHH
Confidence 34566666663221 1234455666666666555 22 22222233333332 334667777788888888888888888
Q ss_pred HHHHHHHhC-CCCCChHhHHHHHHHHHhcCChhhHHHHHHH-----HHHCCCCCCHHHHHHHHHHH
Q 002666 248 FLLDEMKNN-AFSVDIVLYNVCIDCFGKVGKVDMAWKFFHE-----MKAQGVAPDDVTYTSMIGVL 307 (895)
Q Consensus 248 ~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-----~~~~g~~p~~~~~~~l~~~~ 307 (895)
++.+..... ++..|...|...++.....|+..-..++.++ +++.|+..+...-..+-..+
T Consensus 223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF 288 (292)
T PF13929_consen 223 QFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELF 288 (292)
T ss_pred HHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHH
Confidence 888776654 5567788888888888888887776666554 23345555555544444433
No 368
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=74.07 E-value=1.4e+02 Score=33.85 Aligned_cols=26 Identities=12% Similarity=0.128 Sum_probs=18.8
Q ss_pred hHhHHHHHHHHHhcCChhhHHHHHHHH
Q 002666 262 IVLYNVCIDCFGKVGKVDMAWKFFHEM 288 (895)
Q Consensus 262 ~~~~~~l~~~~~~~g~~~~A~~~~~~~ 288 (895)
..-|+ .+..+.-.|.+++|.+++...
T Consensus 149 p~FW~-~v~~lvlrG~~~~a~~lL~~~ 174 (566)
T PF07575_consen 149 PDFWD-YVQRLVLRGLFDQARQLLRLH 174 (566)
T ss_dssp HHHHH-HHHHHHHTT-HHHHHHHH-TT
T ss_pred hhHHH-HHHHHHHcCCHHHHHHHHHhc
Confidence 56676 677778889999999998543
No 369
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=73.99 E-value=83 Score=30.01 Aligned_cols=67 Identities=16% Similarity=0.117 Sum_probs=39.7
Q ss_pred HHHHHHHHHhcCC-------HhHHHHHHHHHHHCCCCC----CH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 002666 754 YSIIINGLCRVRK-------FNKAFVFWQEMQKQGFKP----NT-ITYTTMISGLAKAGNITEANGLFERFKENGGVPD 820 (895)
Q Consensus 754 ~~~l~~~~~~~g~-------~~~A~~~~~~~~~~~~~p----~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 820 (895)
+..+.+.|...|+ +..|.+.|.+..+..-.| +. .....++....+.|+.++|.+.|.+++..+-.+.
T Consensus 121 ~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~ 199 (214)
T PF09986_consen 121 CLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASK 199 (214)
T ss_pred HHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCC
Confidence 3345566655555 345666666665542121 22 2333445567788999999999999887644443
No 370
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=73.78 E-value=4.7 Score=40.11 Aligned_cols=119 Identities=18% Similarity=0.150 Sum_probs=75.3
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHH
Q 002666 727 VKAEEISEAFVCFQSMKDLKCTPNHVTYSIIINGLCRVRKFNKAFVFWQEMQKQGFKPNTI-TYTTMISGLAKAGNITEA 805 (895)
Q Consensus 727 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A 805 (895)
...|.+++|++.|...+... ++....|..-..++.+.+++..|+.-+....+ +.||.. -|-.-..+....|++++|
T Consensus 125 ln~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~e--in~Dsa~~ykfrg~A~rllg~~e~a 201 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIE--INPDSAKGYKFRGYAERLLGNWEEA 201 (377)
T ss_pred hcCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhc--cCcccccccchhhHHHHHhhchHHH
Confidence 34677888888888887744 34445566666777788888888888877776 455532 344444455566888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 002666 806 NGLFERFKENGGVPDSACYNAMMEGLSNANRAMDAYTLFEETRRK 850 (895)
Q Consensus 806 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 850 (895)
.+.+....+.++.+... ..|-...-..+..++-...+++.++.
T Consensus 202 a~dl~~a~kld~dE~~~--a~lKeV~p~a~ki~e~~~k~er~~~e 244 (377)
T KOG1308|consen 202 AHDLALACKLDYDEANS--ATLKEVFPNAGKIEEHRRKYERAREE 244 (377)
T ss_pred HHHHHHHHhccccHHHH--HHHHHhccchhhhhhchhHHHHHHHH
Confidence 88888888865554333 33444455555555555555554443
No 371
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=73.36 E-value=19 Score=25.08 Aligned_cols=27 Identities=7% Similarity=-0.091 Sum_probs=14.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 002666 824 YNAMMEGLSNANRAMDAYTLFEETRRK 850 (895)
Q Consensus 824 ~~~l~~~~~~~g~~~~A~~~~~~~~~~ 850 (895)
...++-++++.|++++|+++.+.+++.
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~ 30 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEI 30 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 344555566666666666666666554
No 372
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=72.97 E-value=73 Score=28.81 Aligned_cols=102 Identities=16% Similarity=0.279 Sum_probs=53.5
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 002666 701 YLIMEELMQKGLTPNAYTWNCLLDALVKAEEISEAFVCFQSMKDLKCTPNHVTYSIIINGLCRVRKFNKAFVFWQEMQKQ 780 (895)
Q Consensus 701 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 780 (895)
.+++..+.+.+++|+...+..++..+.+.|++.. +.++++.++-+|.......+- ...+.+..+.++--.|...
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LL--s~~~~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLL--SLGNQYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHH--HhHccChHHHHHHHHHHHH
Confidence 4455555566677777777777777777776443 333444444455444332221 1223334444444444432
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 002666 781 GFKPNTITYTTMISGLAKAGNITEANGLFERF 812 (895)
Q Consensus 781 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 812 (895)
+. ..+..++..+...|++-+|+++..+.
T Consensus 88 -L~---~~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 88 -LG---TAYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred -hh---hhHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 00 13444555666777777777766654
No 373
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=72.97 E-value=30 Score=37.36 Aligned_cols=89 Identities=10% Similarity=0.103 Sum_probs=49.5
Q ss_pred HhhcCCHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhHH
Q 002666 481 LGKNGRVDDAYKFYEKMLDTDQIPNAILYTSLIRNFFKHGRKEDGHKIYKEMVQRGCSPDLMLLNTYMDCVFKAGETEKG 560 (895)
Q Consensus 481 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 560 (895)
+...|+...|.+.+..+....+.........|+..+.+.|-..+|-.++.+.+... ...+.++..+..++....+++.|
T Consensus 617 wr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a 695 (886)
T KOG4507|consen 617 WRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGA 695 (886)
T ss_pred eeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHH
Confidence 34456666666666665554444344445555555556665566666655555543 33344455555566666666666
Q ss_pred HHHHHHHHHC
Q 002666 561 RALFEEIKAQ 570 (895)
Q Consensus 561 ~~~~~~~~~~ 570 (895)
++.|+++.+.
T Consensus 696 ~~~~~~a~~~ 705 (886)
T KOG4507|consen 696 LEAFRQALKL 705 (886)
T ss_pred HHHHHHHHhc
Confidence 6666666555
No 374
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=72.90 E-value=9.7 Score=28.85 Aligned_cols=46 Identities=4% Similarity=-0.025 Sum_probs=18.9
Q ss_pred hcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHH
Q 002666 798 KAGNITEANGLFERFKENGGVP--DSACYNAMMEGLSNANRAMDAYTL 843 (895)
Q Consensus 798 ~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~ 843 (895)
...+.++|+..+.++++.-..| -..++..|+.+|+..|++++++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444432221 122333444444444444444443
No 375
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=72.82 E-value=8.8 Score=25.41 Aligned_cols=26 Identities=23% Similarity=0.433 Sum_probs=19.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCC
Q 002666 791 TMISGLAKAGNITEANGLFERFKENG 816 (895)
Q Consensus 791 ~l~~~~~~~g~~~~A~~~~~~~~~~~ 816 (895)
.|..+|...|+.+.|.++++++++.|
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 46677778888888888888877643
No 376
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=71.20 E-value=1.1e+02 Score=30.20 Aligned_cols=57 Identities=11% Similarity=0.054 Sum_probs=30.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHh
Q 002666 405 NVLIDMLCKAGNFEDALKFRDAMKEAGLFPNVMTVNIMVDRLCKAQKLDEAFSIFEGM 462 (895)
Q Consensus 405 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 462 (895)
......|..+|.+.+|.++.++.+..+ +.+...+..++..+...|+--.+..-++++
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 334455555666666666666555543 224444555556666666655555555444
No 377
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=70.90 E-value=1e+02 Score=29.58 Aligned_cols=116 Identities=14% Similarity=0.015 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 002666 228 HLFTTLIRVFAREGRVDDALFLLDEMKNNAFSVDIVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGVAPDDVTYTSMIGVL 307 (895)
Q Consensus 228 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~ 307 (895)
.+...-..-+.+.|++++|...|.+..-. +=..-.+..-.+.-+.-++.++ ...+.....++
T Consensus 179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~-----------l~~L~lkEkP~e~eW~eLdk~~-------tpLllNy~QC~ 240 (329)
T KOG0545|consen 179 PVLHQEGNRLFKLGRYKEASSKYREAIIC-----------LRNLQLKEKPGEPEWLELDKMI-------TPLLLNYCQCL 240 (329)
T ss_pred HHHHHhhhhhhhhccHHHHHHHHHHHHHH-----------HHHHHhccCCCChHHHHHHHhh-------hHHHHhHHHHH
Confidence 34455556677888888887777665421 1111112222222222222222 23344555677
Q ss_pred HhcCCHhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhcC
Q 002666 308 CKSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLFERLKQKG 362 (895)
Q Consensus 308 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 362 (895)
...|++-++++.-.+++...+. ++.+|..-+.+.+..-+.++|..-|..+.+..
T Consensus 241 L~~~e~yevleh~seiL~~~~~-nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ld 294 (329)
T KOG0545|consen 241 LKKEEYYEVLEHCSEILRHHPG-NVKAYFRRAKAHAAVWNEAEAKADLQKVLELD 294 (329)
T ss_pred hhHHHHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcC
Confidence 7889999999999999988776 88899888888888889999999999888864
No 378
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=70.53 E-value=3 Score=41.46 Aligned_cols=95 Identities=15% Similarity=0.045 Sum_probs=75.3
Q ss_pred hcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHH
Q 002666 763 RVRKFNKAFVFWQEMQKQGFKPNTITYTTMISGLAKAGNITEANGLFERFKENGGVPDS-ACYNAMMEGLSNANRAMDAY 841 (895)
Q Consensus 763 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~ 841 (895)
..|.+++|++.+...++.+ ++....|..-..++.+.++...|++-+...++ +.||. .-|-.-..+..-.|+|++|.
T Consensus 126 n~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~e--in~Dsa~~ykfrg~A~rllg~~e~aa 202 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIE--INPDSAKGYKFRGYAERLLGNWEEAA 202 (377)
T ss_pred cCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhc--cCcccccccchhhHHHHHhhchHHHH
Confidence 5688999999999998753 44566777777888999999999999999988 77753 34444555666689999999
Q ss_pred HHHHHHHHCCCCCCHhhHH
Q 002666 842 TLFEETRRKGFNIHTKTCV 860 (895)
Q Consensus 842 ~~~~~~~~~~~~~~~~~~~ 860 (895)
+.++.+.+.++.+....+.
T Consensus 203 ~dl~~a~kld~dE~~~a~l 221 (377)
T KOG1308|consen 203 HDLALACKLDYDEANSATL 221 (377)
T ss_pred HHHHHHHhccccHHHHHHH
Confidence 9999999998777665544
No 379
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=70.46 E-value=52 Score=26.10 Aligned_cols=53 Identities=19% Similarity=0.084 Sum_probs=31.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHhhHHHHHHHHHhcCCH
Q 002666 820 DSACYNAMMEGLSNANRAMDAYTLFEETRRKGFNI-HTKTCVILLDALHKAECL 872 (895)
Q Consensus 820 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~ 872 (895)
|......++..+...|++++|++.+-++....... +...-..++.++...|.-
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~ 74 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPG 74 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCC
Confidence 56777777777777777777777777776664222 344445566666666653
No 380
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=70.08 E-value=1.2e+02 Score=30.04 Aligned_cols=54 Identities=17% Similarity=0.136 Sum_probs=26.1
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 002666 653 IDGLAKIDRLDEAYMLFEEAKSKGIELNTVIYSSLIDGFGKVGRIDEAYLIMEEL 707 (895)
Q Consensus 653 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 707 (895)
...|...|.+.+|.++.+..+..+ +.+...+-.++..+...|+--.|.+-++.+
T Consensus 286 a~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 286 ARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 334445555555555555554443 334444445555555555544444444443
No 381
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=69.74 E-value=17 Score=25.28 Aligned_cols=30 Identities=23% Similarity=0.262 Sum_probs=19.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 002666 791 TMISGLAKAGNITEANGLFERFKENGGVPDSA 822 (895)
Q Consensus 791 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 822 (895)
.+.-++.+.|++++|.+..+.+++ +.|+..
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~--~eP~N~ 35 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLE--IEPDNR 35 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHH--HTTS-H
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHh--hCCCcH
Confidence 445566777777777777777777 666543
No 382
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=69.18 E-value=73 Score=30.45 Aligned_cols=116 Identities=14% Similarity=0.037 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 002666 297 DVTYTSMIGVLCKSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLFERLKQKGCIPSVIAYNSLLTC 376 (895)
Q Consensus 297 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 376 (895)
+.+...-++-+.+.|++.+|...|.+++.. ...|+ .--+-|+.+ ..-++++ ....+...-++
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~--------l~~L~-lkEkP~e~e--W~eLdk~-------~tpLllNy~QC 239 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIIC--------LRNLQ-LKEKPGEPE--WLELDKM-------ITPLLLNYCQC 239 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHH--------HHHHH-hccCCCChH--HHHHHHh-------hhHHHHhHHHH
Confidence 445566677788888888888887765421 00000 000111110 0011111 22345556677
Q ss_pred HHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 002666 377 LGKKGRVTEAMKIFEAMKKDARPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEA 430 (895)
Q Consensus 377 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 430 (895)
+...|++-++++.-.++....|.|..+|..-+.+.+..=+.++|..-|..+++.
T Consensus 240 ~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 240 LLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred HhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 778899999999999999999999999999999999999999999999888875
No 383
>PRK11619 lytic murein transglycosylase; Provisional
Probab=68.92 E-value=2.2e+02 Score=32.72 Aligned_cols=249 Identities=9% Similarity=0.040 Sum_probs=115.6
Q ss_pred CCHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHH
Q 002666 381 GRVTEAMKIFEAMKKDARPN----NTTYNVLIDMLCKAGNFEDALKFRDAMKEAGLFPNVMTVNIMVDRLCKAQKLDEAF 456 (895)
Q Consensus 381 g~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 456 (895)
.+.+.|...+........-+ ..++..++......+...+|...++...... .+......-+..-...++++.+.
T Consensus 255 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~~ 332 (644)
T PRK11619 255 QDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGLN 332 (644)
T ss_pred hCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHHH
Confidence 34566666666553322211 1123333333333322455555555543321 13333333344444667777777
Q ss_pred HHHHHhhhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHhcCCHHH-HHHHHHHHHHc
Q 002666 457 SIFEGMDHKTCTPDAVTFCSLIDGLGKNGRVDDAYKFYEKMLDTDQIPNAILYTSLIRNFFKHGRKED-GHKIYKEMVQR 535 (895)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-A~~~~~~~~~~ 535 (895)
..+..|.... .....-..-+++++...|+.++|...|+.+... .+|+.++.. .+.|..-. ....... ...
T Consensus 333 ~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~------~~fYG~LAa-~~Lg~~~~~~~~~~~~-~~~ 403 (644)
T PRK11619 333 TWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQ------RGFYPMVAA-QRLGEEYPLKIDKAPK-PDS 403 (644)
T ss_pred HHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcC------CCcHHHHHH-HHcCCCCCCCCCCCCc-hhh
Confidence 7777665432 224445566777766677777777777776331 123332211 11221100 0000000 000
Q ss_pred CCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH-----cCCCCC
Q 002666 536 GCSPDLMLLNTYMDCVFKAGETEKGRALFEEIKAQGFVPDVQSYSILIHGLVKAGFAHETDQLFYAMKK-----QGCVLD 610 (895)
Q Consensus 536 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~ 610 (895)
.+..+ -...-+..+...|....|...+..+... .+......+.....+.|.++.+......... ..++
T Consensus 404 ~~~~~--~~~~ra~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~rfp-- 476 (644)
T PRK11619 404 ALTQG--PEMARVRELMYWNMDNTARSEWANLVAS---RSKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEERFP-- 476 (644)
T ss_pred hhccC--hHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHHhCC--
Confidence 00000 0112233455667777777777776664 2444445555555566666666554433221 1111
Q ss_pred HHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHh
Q 002666 611 TRAYNTVVDGFCKSGKVNKAYQLLEEMKTKGHYPTVVT 648 (895)
Q Consensus 611 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 648 (895)
..|...+..+.+.-.++.++-+---..+.++.|+...
T Consensus 477 -~~~~~~~~~~a~~~~v~~~lv~ai~rqES~f~p~a~S 513 (644)
T PRK11619 477 -LAWNDEFRRYTSGKGIPQSYAMAIARQESAWNPKARS 513 (644)
T ss_pred -cchHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCCCcc
Confidence 1355566666665566655533333345566666543
No 384
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=68.61 E-value=88 Score=31.51 Aligned_cols=91 Identities=18% Similarity=0.158 Sum_probs=44.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCC-CCC--HHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCH-HHHHHHHHHH
Q 002666 721 CLLDALVKAEEISEAFVCFQSMKDLKC-TPN--HVTYSIIINGLCRVRKFNKAFVFWQEMQKQGFKPNT-ITYTTMISGL 796 (895)
Q Consensus 721 ~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~ 796 (895)
-=++-|.+..++..|...|.+-++..+ .|+ ...|+.-.-+-...|+|..|+.-....+. +.|+. ..|.-=..++
T Consensus 86 eeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~--~~P~h~Ka~~R~Akc~ 163 (390)
T KOG0551|consen 86 EEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALK--LKPTHLKAYIRGAKCL 163 (390)
T ss_pred HHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh--cCcchhhhhhhhhHHH
Confidence 345555666666666666666554322 222 23455444444455666666655555554 34442 1222222334
Q ss_pred HhcCCHHHHHHHHHHHH
Q 002666 797 AKAGNITEANGLFERFK 813 (895)
Q Consensus 797 ~~~g~~~~A~~~~~~~~ 813 (895)
.....+++|+.+.+..+
T Consensus 164 ~eLe~~~~a~nw~ee~~ 180 (390)
T KOG0551|consen 164 LELERFAEAVNWCEEGL 180 (390)
T ss_pred HHHHHHHHHHHHHhhhh
Confidence 44455555555544443
No 385
>PRK10941 hypothetical protein; Provisional
Probab=67.69 E-value=60 Score=32.24 Aligned_cols=59 Identities=12% Similarity=-0.070 Sum_probs=39.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 002666 790 TTMISGLAKAGNITEANGLFERFKENGGVP-DSACYNAMMEGLSNANRAMDAYTLFEETRRK 850 (895)
Q Consensus 790 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 850 (895)
+.+-.+|.+.++++.|++..+.++. +.| ++.-+.--+-.|.+.|.+..|..-++.-++.
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~--l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQ--FDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 3455556777777777777777776 556 4555666666677777777777777766655
No 386
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=67.62 E-value=12 Score=21.67 Aligned_cols=20 Identities=25% Similarity=0.286 Sum_probs=7.9
Q ss_pred HHHHHhcCCHHHHHHHHHHH
Q 002666 793 ISGLAKAGNITEANGLFERF 812 (895)
Q Consensus 793 ~~~~~~~g~~~~A~~~~~~~ 812 (895)
+..+...|++++|...+++.
T Consensus 8 a~~~~~~~~~~~a~~~~~~~ 27 (34)
T smart00028 8 GNAYLKLGDYDEALEYYEKA 27 (34)
T ss_pred HHHHHHHhhHHHHHHHHHHH
Confidence 33333344444444444333
No 387
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=67.56 E-value=1.7e+02 Score=30.85 Aligned_cols=24 Identities=13% Similarity=0.073 Sum_probs=16.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q 002666 405 NVLIDMLCKAGNFEDALKFRDAMK 428 (895)
Q Consensus 405 ~~l~~~~~~~g~~~~A~~~~~~~~ 428 (895)
+....-|...|+..+|.+..+++.
T Consensus 218 n~~l~eyv~~getrea~rciR~L~ 241 (645)
T KOG0403|consen 218 NGNLIEYVEIGETREACRCIRELG 241 (645)
T ss_pred HHHHHHHHHcccHHHHHHHHHHhC
Confidence 445566777777777777766654
No 388
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=66.31 E-value=22 Score=27.03 Aligned_cols=54 Identities=13% Similarity=0.014 Sum_probs=39.9
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCC--HhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002666 831 LSNANRAMDAYTLFEETRRKGFNIH--TKTCVILLDALHKAECLEQAAIVGAVLRE 884 (895)
Q Consensus 831 ~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~l~~ 884 (895)
++..++.++|+..+++++++-..+. ..++-.|+++|...|+++++..-...=.+
T Consensus 16 LY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~ 71 (80)
T PF10579_consen 16 LYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLE 71 (80)
T ss_pred HhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578899999999999998843322 34455788999999999998775443333
No 389
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=66.06 E-value=1.9e+02 Score=30.93 Aligned_cols=107 Identities=14% Similarity=0.032 Sum_probs=67.1
Q ss_pred HHHhcCChHHHHHHHHHHHH---cCCCCC-----HHhHHHHHHHHHccCChHHHHHHHHHHHH-------CCCCCCH---
Q 002666 585 GLVKAGFAHETDQLFYAMKK---QGCVLD-----TRAYNTVVDGFCKSGKVNKAYQLLEEMKT-------KGHYPTV--- 646 (895)
Q Consensus 585 ~~~~~g~~~~A~~~~~~~~~---~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~~p~~--- 646 (895)
.+.-.|++.+|.+++...-- .|.... -..||.+.-.+.+.|.+..+..+|.+..+ .|++|..
T Consensus 249 ~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~t 328 (696)
T KOG2471|consen 249 LEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFT 328 (696)
T ss_pred HHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCccee
Confidence 34556788888777654321 121111 22346666677788888888888887764 3444321
Q ss_pred --------HhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHc
Q 002666 647 --------VTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNTVIYSSLIDGFGK 693 (895)
Q Consensus 647 --------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 693 (895)
.+|+. .-.|...|++-.|.+.|.+.... +..++..|..+..+|..
T Consensus 329 ls~nks~eilYNc-G~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 329 LSQNKSMEILYNC-GLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIM 381 (696)
T ss_pred hhcccchhhHHhh-hHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHH
Confidence 23332 23466778888888888888765 45677888888877754
No 390
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=65.51 E-value=1.5e+02 Score=29.44 Aligned_cols=82 Identities=21% Similarity=0.279 Sum_probs=42.2
Q ss_pred CChHhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCCHHhH-HHH
Q 002666 260 VDIVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGVAPDDVTYTSMIGVLCKSKRLEEAVAMFEQMDRNREVPCAYAY-NTM 338 (895)
Q Consensus 260 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~l 338 (895)
-|......++..|.+.|++.+|+..|-. |-.|+...+..++......|...++ ..| ...
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~----~~~~~~~~~~~ll~~~~~~~~~~e~----------------dlfi~Ra 147 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLL----GTDPSAFAYVMLLEEWSTKGYPSEA----------------DLFIARA 147 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHT----S-HHHHHHHHHHHHHHHHHTSS--H----------------HHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHh----cCChhHHHHHHHHHHHHHhcCCcch----------------hHHHHHH
Confidence 3667777888888888888888776622 1122333332233333333332222 222 222
Q ss_pred HHHHHccCCHHHHHHHHHHHHhc
Q 002666 339 IMGYGSVGKFDEAFSLFERLKQK 361 (895)
Q Consensus 339 ~~~~~~~g~~~~A~~~~~~~~~~ 361 (895)
+--|.-.++...|...++...+.
T Consensus 148 VL~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 148 VLQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HHHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHH
Confidence 33456677777777777666544
No 391
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=65.50 E-value=1.5e+02 Score=29.44 Aligned_cols=25 Identities=28% Similarity=0.242 Sum_probs=17.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHH
Q 002666 785 NTITYTTMISGLAKAGNITEANGLF 809 (895)
Q Consensus 785 ~~~~~~~l~~~~~~~g~~~~A~~~~ 809 (895)
++..+..++..|.+.|++.+|...|
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHH
Confidence 5677777888888888888877654
No 392
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=65.41 E-value=3.2 Score=36.70 Aligned_cols=54 Identities=9% Similarity=0.182 Sum_probs=29.0
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHH
Q 002666 268 CIDCFGKVGKVDMAWKFFHEMKAQGVAPDDVTYTSMIGVLCKSKRLEEAVAMFE 321 (895)
Q Consensus 268 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 321 (895)
++..+.+.+.......+++.+...+...+....+.++..|++.++.++..++++
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 344445555566666666666654434445555666666666655555555554
No 393
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=65.08 E-value=84 Score=30.86 Aligned_cols=87 Identities=10% Similarity=0.086 Sum_probs=61.2
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-
Q 002666 756 IIINGLCRVRKFNKAFVFWQEMQKQ--GFKPNTITYTTMISGLAKAGNITEANGLFERFKENGGVPDSACYNAMMEGLS- 832 (895)
Q Consensus 756 ~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~- 832 (895)
.-|.++.+.+++.+++...-+..+. .++| .+...-|-.|.+.|....+.++-...+...-+-+...|..++..|.
T Consensus 88 vGIQALAEmnrWreVLsWvlqyYq~pEklPp--kIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl 165 (309)
T PF07163_consen 88 VGIQALAEMNRWREVLSWVLQYYQVPEKLPP--KILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLL 165 (309)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHhcCcccCCH--HHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHH
Confidence 3468899999999999876666543 2333 4455555568899999999999888887432223344666666554
Q ss_pred ----hcCCHHHHHHHH
Q 002666 833 ----NANRAMDAYTLF 844 (895)
Q Consensus 833 ----~~g~~~~A~~~~ 844 (895)
=.|.+++|.++.
T Consensus 166 ~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 166 HVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHhccccHHHHHHHH
Confidence 479999998876
No 394
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=64.71 E-value=63 Score=25.63 Aligned_cols=36 Identities=22% Similarity=0.233 Sum_probs=19.8
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 002666 395 KDARPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEA 430 (895)
Q Consensus 395 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 430 (895)
...|.|..+...+...+...|++++|++.+-.++..
T Consensus 16 a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 16 AANPDDLDARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp HHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred HcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 344555566666666666666666666655555543
No 395
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=63.99 E-value=2.8 Score=37.07 Aligned_cols=53 Identities=11% Similarity=0.212 Sum_probs=27.1
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhhHHHHHH
Q 002666 234 IRVFAREGRVDDALFLLDEMKNNAFSVDIVLYNVCIDCFGKVGKVDMAWKFFH 286 (895)
Q Consensus 234 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 286 (895)
+..+.+.+.++....+++.+...+...+....+.++..|++.++.+...++++
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 33444455555555555555544434445555556666665555555555554
No 396
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=63.16 E-value=72 Score=25.64 Aligned_cols=50 Identities=16% Similarity=0.107 Sum_probs=22.3
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 002666 796 LAKAGNITEANGLFERFKENGGVPDSACYNAMMEGLSNANRAMDAYTLFEETRRKG 851 (895)
Q Consensus 796 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 851 (895)
+.+.|++++|..+.+.. ..||...|..| +-.+.|-.+++...+-++..+|
T Consensus 49 LmNrG~Yq~Al~l~~~~----~~pdlepw~AL--ce~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 49 LMNRGDYQSALQLGNKL----CYPDLEPWLAL--CEWRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHccchHHHHHHhcCCC----CCchHHHHHHH--HHHhhccHHHHHHHHHHHHhCC
Confidence 44555555555443333 23444444433 2334444444444444444444
No 397
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=63.09 E-value=46 Score=26.64 Aligned_cols=25 Identities=20% Similarity=0.104 Sum_probs=14.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC
Q 002666 826 AMMEGLSNANRAMDAYTLFEETRRK 850 (895)
Q Consensus 826 ~l~~~~~~~g~~~~A~~~~~~~~~~ 850 (895)
.++......|++++|...+++.+..
T Consensus 46 ~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 46 NLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4455555666666666666665544
No 398
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=62.83 E-value=82 Score=30.91 Aligned_cols=88 Identities=13% Similarity=0.095 Sum_probs=42.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHH----
Q 002666 233 LIRVFAREGRVDDALFLLDEMKNNAFSVDIVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGVAPDDVTYTSMIGVLC---- 308 (895)
Q Consensus 233 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~---- 308 (895)
-|.+++..+++.+++.+.-+.-..--+.-..+....|-.|.+.|.+..+.++-......--.-+...|..++..|.
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VL 168 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVL 168 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHH
Confidence 3455555566665555544433221112233344455566666666666666666555311122233555444433
Q ss_pred -hcCCHhHHHHHH
Q 002666 309 -KSKRLEEAVAMF 320 (895)
Q Consensus 309 -~~g~~~~A~~~~ 320 (895)
-.|.+++|.++.
T Consensus 169 lPLG~~~eAeelv 181 (309)
T PF07163_consen 169 LPLGHFSEAEELV 181 (309)
T ss_pred hccccHHHHHHHH
Confidence 345666665554
No 399
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=62.63 E-value=2.7e+02 Score=31.54 Aligned_cols=25 Identities=20% Similarity=0.222 Sum_probs=16.3
Q ss_pred HHhHHHHHHHHHccCCHHHHHHHHHH
Q 002666 332 AYAYNTMIMGYGSVGKFDEAFSLFER 357 (895)
Q Consensus 332 ~~~~~~l~~~~~~~g~~~~A~~~~~~ 357 (895)
..-|. .+..+.-.|.++.|..++..
T Consensus 149 p~FW~-~v~~lvlrG~~~~a~~lL~~ 173 (566)
T PF07575_consen 149 PDFWD-YVQRLVLRGLFDQARQLLRL 173 (566)
T ss_dssp HHHHH-HHHHHHHTT-HHHHHHHH-T
T ss_pred hhHHH-HHHHHHHcCCHHHHHHHHHh
Confidence 45565 56667777888888888743
No 400
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=61.95 E-value=77 Score=31.89 Aligned_cols=101 Identities=19% Similarity=0.166 Sum_probs=79.6
Q ss_pred CCCH--HHHHHHHHHHHhcCCHhHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CH
Q 002666 748 TPNH--VTYSIIINGLCRVRKFNKAFVFWQEMQKQG-FKPN--TITYTTMISGLAKAGNITEANGLFERFKENGGVP-DS 821 (895)
Q Consensus 748 ~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~ 821 (895)
.|+. .+|--=++-|.+.++|..|...|.+-+... -.|| ...|+.-..+....|++..|+.-..+++. +.| ..
T Consensus 76 ep~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~--~~P~h~ 153 (390)
T KOG0551|consen 76 EPHEQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALK--LKPTHL 153 (390)
T ss_pred ChHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh--cCcchh
Confidence 3444 345566778899999999999999888762 2344 56788888887888999999998888888 778 57
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 002666 822 ACYNAMMEGLSNANRAMDAYTLFEETRRK 850 (895)
Q Consensus 822 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 850 (895)
.+|..=+.++....++.+|..+.++.+.-
T Consensus 154 Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~ 182 (390)
T KOG0551|consen 154 KAYIRGAKCLLELERFAEAVNWCEEGLQI 182 (390)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHhhhhhh
Confidence 77778888899999999999998887543
No 401
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=61.39 E-value=1.8e+02 Score=28.99 Aligned_cols=18 Identities=33% Similarity=0.612 Sum_probs=13.1
Q ss_pred HHHHHHHHHhcCCHHHHH
Q 002666 404 YNVLIDMLCKAGNFEDAL 421 (895)
Q Consensus 404 ~~~l~~~~~~~g~~~~A~ 421 (895)
|.-|+.+++.+|+.+-.+
T Consensus 324 yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 324 YAPLLAAFCSQGQSELEL 341 (412)
T ss_pred hhHHHHHHhcCChHHHHH
Confidence 677778888888776554
No 402
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=60.78 E-value=49 Score=27.80 Aligned_cols=58 Identities=19% Similarity=0.247 Sum_probs=40.2
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHH
Q 002666 350 EAFSLFERLKQKGCIPSVIAYNSLLTCLGKKGRVTEAMKIFEAMKKDARPNNTTYNVL 407 (895)
Q Consensus 350 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 407 (895)
+..+-++.+...++.|++.....-++++.+.+|+..|..+|+.++...++....|-.+
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~~k~~Y~y~ 124 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGAQKQVYPYY 124 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 4455566666667778888888888888888888888888887776554444444433
No 403
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=59.57 E-value=2e+02 Score=34.46 Aligned_cols=79 Identities=9% Similarity=0.107 Sum_probs=40.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCH----HHHH
Q 002666 719 WNCLLDALVKAEEISEAFVCFQSMKDLKCTPN----HVTYSIIINGLCRVRKFNKAFVFWQEMQKQGFKPNT----ITYT 790 (895)
Q Consensus 719 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~ 790 (895)
|...++.+-..+..+.+.++...+++. .+++ ..+++++.+-....|.+.+|.+.+-. .||. ....
T Consensus 986 Ylkv~rlle~hn~~E~vcQlA~~AIe~-l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~------npdserrrdcLR 1058 (1480)
T KOG4521|consen 986 YLKVVRLLEEHNHAEEVCQLAVKAIEN-LPDDNPSVALISTTVFNHHLDLGHWFQAYKAILR------NPDSERRRDCLR 1058 (1480)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHh-CCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHc------CCcHHHHHHHHH
Confidence 444555555666666666666655542 1222 13445555555556666665544321 2342 3455
Q ss_pred HHHHHHHhcCCHHH
Q 002666 791 TMISGLAKAGNITE 804 (895)
Q Consensus 791 ~l~~~~~~~g~~~~ 804 (895)
.++-.++..|.++.
T Consensus 1059 qlvivLfecg~l~~ 1072 (1480)
T KOG4521|consen 1059 QLVIVLFECGELEA 1072 (1480)
T ss_pred HHHHHHHhccchHH
Confidence 56666666665543
No 404
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=59.24 E-value=2.5e+02 Score=29.93 Aligned_cols=90 Identities=17% Similarity=0.204 Sum_probs=48.0
Q ss_pred HHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCCHHH
Q 002666 271 CFGKVGKVDMAWKFFHEMKAQGVAPDDVTYTSMIGVLCKSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFDE 350 (895)
Q Consensus 271 ~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 350 (895)
.+...|.++.+.+.+...... +.....+..+++....+.|++++|...-+-|+...++ +......-....-..|-+++
T Consensus 332 i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~ 409 (831)
T PRK15180 332 IFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDK 409 (831)
T ss_pred HHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHH
Confidence 344556666666666554433 2234445556666666666666666666666655544 33333322222334455666
Q ss_pred HHHHHHHHHhcC
Q 002666 351 AFSLFERLKQKG 362 (895)
Q Consensus 351 A~~~~~~~~~~~ 362 (895)
+...++++...+
T Consensus 410 ~~~~wk~~~~~~ 421 (831)
T PRK15180 410 SYHYWKRVLLLN 421 (831)
T ss_pred HHHHHHHHhccC
Confidence 666666665544
No 405
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=59.20 E-value=1.3e+02 Score=31.79 Aligned_cols=59 Identities=15% Similarity=0.070 Sum_probs=27.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002666 790 TTMISGLAKAGNITEANGLFERFKEN------GGVP-DSACYNAMMEGLSNANRAMDAYTLFEETR 848 (895)
Q Consensus 790 ~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 848 (895)
..|++.++-.||+..|+++++.+.=. .+.+ ...++..++-+|.-.+++.+|++.|..++
T Consensus 126 igLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 126 IGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555554443100 0111 33445555555555555555555555543
No 406
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=58.95 E-value=2.4e+02 Score=29.66 Aligned_cols=31 Identities=19% Similarity=0.248 Sum_probs=18.1
Q ss_pred CcCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 002666 224 EVSVHLFTTLIRVFAREGRVDDALFLLDEMK 254 (895)
Q Consensus 224 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 254 (895)
|-...++..+...+..+|+...|.+++++.+
T Consensus 37 PyHidtLlqls~v~~~~gd~~~A~~lleRAL 67 (360)
T PF04910_consen 37 PYHIDTLLQLSEVYRQQGDHAQANDLLERAL 67 (360)
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4455556666666666666666666655543
No 407
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=58.83 E-value=44 Score=26.75 Aligned_cols=60 Identities=8% Similarity=-0.092 Sum_probs=39.4
Q ss_pred HhcCCHHHHHHHHHHHHHC----CCC----CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhhhh
Q 002666 832 SNANRAMDAYTLFEETRRK----GFN----IHTKTCVILLDALHKAECLEQAAIVGAVLRETAKSQHA 891 (895)
Q Consensus 832 ~~~g~~~~A~~~~~~~~~~----~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 891 (895)
.+.|++.+|.+.+.+.... +.+ .-..+...++......|++++|...+++..+.+.+...
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D 76 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGD 76 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCC
Confidence 3456666665554444332 111 12344567888889999999999999998888876543
No 408
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=58.43 E-value=21 Score=37.61 Aligned_cols=94 Identities=16% Similarity=0.148 Sum_probs=57.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHH-HHHHHHHhcCCHhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcC
Q 002666 723 LDALVKAEEISEAFVCFQSMKDLKCTPNHVTYS-IIINGLCRVRKFNKAFVFWQEMQKQGFKPN-TITYTTMISGLAKAG 800 (895)
Q Consensus 723 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g 800 (895)
+....+.+.++.|+.++.++++ ..|+...|. .-..++.+.+++..|+.-..++.+. .|+ ...|.--+.++.+.+
T Consensus 11 an~~l~~~~fd~avdlysKaI~--ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~--dP~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIE--LDPNCAIYFANRALAHLKVESFGGALHDALKAIEL--DPTYIKAYVRRGTAVMALG 86 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHh--cCCcceeeechhhhhheeechhhhHHHHHHhhhhc--CchhhheeeeccHHHHhHH
Confidence 3445566777777777777777 346554443 3336667777777777766666653 343 233444444566666
Q ss_pred CHHHHHHHHHHHHHCCCCCCHH
Q 002666 801 NITEANGLFERFKENGGVPDSA 822 (895)
Q Consensus 801 ~~~~A~~~~~~~~~~~~~p~~~ 822 (895)
.+.+|...|+.... ..|+..
T Consensus 87 ~~~~A~~~l~~~~~--l~Pnd~ 106 (476)
T KOG0376|consen 87 EFKKALLDLEKVKK--LAPNDP 106 (476)
T ss_pred HHHHHHHHHHHhhh--cCcCcH
Confidence 77777777777766 666443
No 409
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=58.32 E-value=73 Score=26.85 Aligned_cols=43 Identities=9% Similarity=0.163 Sum_probs=23.5
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002666 772 VFWQEMQKQGFKPNTITYTTMISGLAKAGNITEANGLFERFKE 814 (895)
Q Consensus 772 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 814 (895)
+-++.+....+.|++.+-...++++.+.+|+.-|+++|+-+..
T Consensus 70 kglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 70 KGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3334444445555555555556666666666666666555544
No 410
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=57.95 E-value=26 Score=36.96 Aligned_cols=53 Identities=17% Similarity=0.159 Sum_probs=22.5
Q ss_pred HhcCCHhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 002666 308 CKSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLFERLKQK 361 (895)
Q Consensus 308 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 361 (895)
.+.+.++.|+.++.++++..+. ++..|..-..++.+.+++..|+.=+.++++.
T Consensus 15 l~~~~fd~avdlysKaI~ldpn-ca~~~anRa~a~lK~e~~~~Al~Da~kaie~ 67 (476)
T KOG0376|consen 15 LKDKVFDVAVDLYSKAIELDPN-CAIYFANRALAHLKVESFGGALHDALKAIEL 67 (476)
T ss_pred cccchHHHHHHHHHHHHhcCCc-ceeeechhhhhheeechhhhHHHHHHhhhhc
Confidence 3444444444444444444322 2222222234444444444444444444443
No 411
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=56.85 E-value=23 Score=20.94 Aligned_cols=27 Identities=15% Similarity=0.127 Sum_probs=12.9
Q ss_pred CHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 002666 382 RVTEAMKIFEAMKKDARPNNTTYNVLI 408 (895)
Q Consensus 382 ~~~~A~~~~~~~~~~~~~~~~~~~~l~ 408 (895)
+.+.|..+|+++....|.+...|...+
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~ 28 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYA 28 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 344555555555544444444444443
No 412
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=56.57 E-value=2.8e+02 Score=29.77 Aligned_cols=160 Identities=11% Similarity=0.009 Sum_probs=87.6
Q ss_pred HhcCCHHHHHHHHHHHHhcC-CCCC--HH-----HHHHHH-HHHHhcCCHhHHHHHHHHHHHCCCCCCHHH--HHHHHHH
Q 002666 727 VKAEEISEAFVCFQSMKDLK-CTPN--HV-----TYSIII-NGLCRVRKFNKAFVFWQEMQKQGFKPNTIT--YTTMISG 795 (895)
Q Consensus 727 ~~~g~~~~A~~~~~~~~~~~-~~p~--~~-----~~~~l~-~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~~l~~~ 795 (895)
.-.|++.+|++-...|.+-- -.|. .. ....++ --++..+.++.|..-|..+.+.--.-|... -..+...
T Consensus 334 lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~ 413 (629)
T KOG2300|consen 334 LVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAIS 413 (629)
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHH
Confidence 44788888888888887621 1232 11 112233 334456788888888877766422223222 2334455
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCC-CH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-----HhhHHHHHH
Q 002666 796 LAKAGNITEANGLFERFKENGGVP-DS-----ACYNAMMEGLSNANRAMDAYTLFEETRRKGFNIH-----TKTCVILLD 864 (895)
Q Consensus 796 ~~~~g~~~~A~~~~~~~~~~~~~p-~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~l~~ 864 (895)
|.+.|+-+.--++++.+--.+-.+ .. ..+..-+-..+.+|++.||..++.+.++-.-..| ......|+.
T Consensus 414 YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~ 493 (629)
T KOG2300|consen 414 YLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSH 493 (629)
T ss_pred HHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHH
Confidence 777777666555555442211111 11 1122222234667888999888888776532222 233445677
Q ss_pred HHHhcCCHHHHHHHHHHHHHHH
Q 002666 865 ALHKAECLEQAAIVGAVLRETA 886 (895)
Q Consensus 865 ~~~~~g~~~~A~~~~~~l~~~~ 886 (895)
+....|+..+++.+..--.+.+
T Consensus 494 v~lslgn~~es~nmvrpamqlA 515 (629)
T KOG2300|consen 494 VFLSLGNTVESRNMVRPAMQLA 515 (629)
T ss_pred HHHHhcchHHHHhccchHHHHH
Confidence 7777888888876544433333
No 413
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=56.40 E-value=1e+02 Score=32.63 Aligned_cols=60 Identities=12% Similarity=0.055 Sum_probs=42.8
Q ss_pred HHHHHHHHccCCcchHHHHHHHHHHcCCCCChh--hHHHHHHHHHh--cCChHHHHHHHHHHHhC
Q 002666 126 NSLLMVMAVSKNFEPLEEILGEMSLAGIGPTNN--TCIELVVSCVK--SKMLREAFDIIQTMRKF 186 (895)
Q Consensus 126 ~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~--~~~~l~~~~~~--~~~~~~A~~~~~~~~~~ 186 (895)
...+..+...++|..|.++|+++... ++++.. .+..+..+|.. .-++++|.+.++.....
T Consensus 135 ~~~a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 135 WRRAKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34456677889999999999998876 555554 45556666654 55678888888877654
No 414
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=56.29 E-value=1.1e+02 Score=24.77 Aligned_cols=11 Identities=18% Similarity=0.338 Sum_probs=5.1
Q ss_pred HHHHHHHHHhh
Q 002666 103 NLAINYFRWVE 113 (895)
Q Consensus 103 ~~a~~~f~~~~ 113 (895)
+.|..+-+|+.
T Consensus 22 qEA~tIAdwL~ 32 (115)
T TIGR02508 22 QEANTIADWLH 32 (115)
T ss_pred HHHHHHHHHHh
Confidence 44444444444
No 415
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=55.34 E-value=2.3e+02 Score=28.30 Aligned_cols=135 Identities=10% Similarity=0.121 Sum_probs=86.0
Q ss_pred hhHHHHHHHHHHH-cCCCcCHHHHHHHHHHHHh-cCC-hhHHHHHHHHHHh-CCCCCChHhHHHHHHHHHhcCChhhHHH
Q 002666 208 SNLMLNLFHQMQE-LGYEVSVHLFTTLIRVFAR-EGR-VDDALFLLDEMKN-NAFSVDIVLYNVCIDCFGKVGKVDMAWK 283 (895)
Q Consensus 208 ~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~-~g~-~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 283 (895)
..+|+.+|+.... ..+-.|..+...+++.... .+. ...-.++.+-+.. .+..++..+-..++..+++.+++..-.+
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~ 223 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ 223 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Confidence 3456666663211 1233466666666666655 222 2222222232322 2335677777789999999999999999
Q ss_pred HHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHH-----HhhCCCCCCHHhHHHHHHHH
Q 002666 284 FFHEMKAQ-GVAPDDVTYTSMIGVLCKSKRLEEAVAMFEQ-----MDRNREVPCAYAYNTMIMGY 342 (895)
Q Consensus 284 ~~~~~~~~-g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~-----~~~~~~~~~~~~~~~l~~~~ 342 (895)
+++..... +...|...|..+|......|+..-..++.++ +.+.++.-+...-..+-..+
T Consensus 224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF 288 (292)
T PF13929_consen 224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELF 288 (292)
T ss_pred HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHH
Confidence 99888766 5666888999999999999999888888776 23444544555444444443
No 416
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=54.44 E-value=2e+02 Score=27.43 Aligned_cols=96 Identities=16% Similarity=0.111 Sum_probs=42.8
Q ss_pred cCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC---CHHHHH--HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHH
Q 002666 679 LNTVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTP---NAYTWN--CLLDALVKAEEISEAFVCFQSMKDLKCTPNHVT 753 (895)
Q Consensus 679 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p---~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 753 (895)
+...-++.|+--|.-...+.+|.+.|..-. |+.| +..+++ .-+......|++++|++...+....-+..|...
T Consensus 24 ~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~--~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~l 101 (228)
T KOG2659|consen 24 VMREDLNRLVMNYLVHEGYVEAAEKFAKES--GIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNREL 101 (228)
T ss_pred cchhhHHHHHHHHHHhccHHHHHHHhcccc--CCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccchhH
Confidence 344444555544444444555555554322 2333 333332 234455666666666666665543222233322
Q ss_pred HHHHHH----HHHhcCCHhHHHHHHHH
Q 002666 754 YSIIIN----GLCRVRKFNKAFVFWQE 776 (895)
Q Consensus 754 ~~~l~~----~~~~~g~~~~A~~~~~~ 776 (895)
+..+.. -..+.|..++|+++.+.
T Consensus 102 ~F~Lq~q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 102 FFHLQQLHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 221111 12344555555555543
No 417
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=54.28 E-value=2.9e+02 Score=31.41 Aligned_cols=70 Identities=17% Similarity=0.114 Sum_probs=33.1
Q ss_pred cCCHhHHHHHHHHHHHC--CCCCCHHH-----HHHHH--HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 002666 764 VRKFNKAFVFWQEMQKQ--GFKPNTIT-----YTTMI--SGLAKAGNITEANGLFERFKENGGVPDSACYNAMMEGLSNA 834 (895)
Q Consensus 764 ~g~~~~A~~~~~~~~~~--~~~p~~~~-----~~~l~--~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 834 (895)
-|+-++|+...-.+++. .+.||... |.-+. ..|...+..+.|.++|+++-+ ..|....-..++..+...
T Consensus 256 ~GDRakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~aa 333 (1226)
T KOG4279|consen 256 PGDRAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRAA 333 (1226)
T ss_pred CccHHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHHh
Confidence 35555566555555544 34444321 11111 113344556667777777666 555443333344444444
Q ss_pred C
Q 002666 835 N 835 (895)
Q Consensus 835 g 835 (895)
|
T Consensus 334 G 334 (1226)
T KOG4279|consen 334 G 334 (1226)
T ss_pred h
Confidence 4
No 418
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=53.92 E-value=1.2e+02 Score=29.52 Aligned_cols=17 Identities=12% Similarity=0.089 Sum_probs=9.0
Q ss_pred cCCHHHHHHHHHHHHHC
Q 002666 834 ANRAMDAYTLFEETRRK 850 (895)
Q Consensus 834 ~g~~~~A~~~~~~~~~~ 850 (895)
.|+.++|+.+.+++...
T Consensus 182 ~~~~~~A~~ia~~afd~ 198 (236)
T PF00244_consen 182 LNDPEKAIEIAKQAFDE 198 (236)
T ss_dssp SS-HHHHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHH
Confidence 56666666665555444
No 419
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=53.26 E-value=37 Score=31.80 Aligned_cols=34 Identities=21% Similarity=0.260 Sum_probs=20.0
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 002666 817 GVPDSACYNAMMEGLSNANRAMDAYTLFEETRRK 850 (895)
Q Consensus 817 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 850 (895)
..|++.+|..++.++...|+.++|..+.+++...
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4456666666666666666666666665555544
No 420
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=52.94 E-value=2.3e+02 Score=27.61 Aligned_cols=39 Identities=13% Similarity=0.078 Sum_probs=17.4
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHH
Q 002666 653 IDGLAKIDRLDEAYMLFEEAKSKGIELNTVIYSSLIDGF 691 (895)
Q Consensus 653 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 691 (895)
+....+.++++++...++++...+...+..-.+.+..+|
T Consensus 8 Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvay 46 (236)
T PF00244_consen 8 AKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAY 46 (236)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHH
Confidence 334445555555555555555554444444444444443
No 421
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=52.72 E-value=30 Score=25.03 Aligned_cols=20 Identities=20% Similarity=0.285 Sum_probs=7.5
Q ss_pred HHHHHHhcCCHHHHHHHHHH
Q 002666 827 MMEGLSNANRAMDAYTLFEE 846 (895)
Q Consensus 827 l~~~~~~~g~~~~A~~~~~~ 846 (895)
++.+|...|++++|.+++++
T Consensus 29 vI~gllqlg~~~~a~eYi~~ 48 (62)
T PF14689_consen 29 VIYGLLQLGKYEEAKEYIKE 48 (62)
T ss_dssp HHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHH
Confidence 33334444444444443333
No 422
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=51.68 E-value=52 Score=32.35 Aligned_cols=60 Identities=18% Similarity=0.136 Sum_probs=35.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 002666 823 CYNAMMEGLSNANRAMDAYTLFEETRRK----GF-NIHTKTCVILLDALHKAECLEQAAIVGAVL 882 (895)
Q Consensus 823 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~l 882 (895)
....++..|+..|++++|.++++.+... |. .....+...|..++...|+.+....+.=++
T Consensus 180 l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 180 LSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3445666677777777777777766422 11 223444556666777777777766554433
No 423
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=51.51 E-value=4.4e+02 Score=30.54 Aligned_cols=97 Identities=13% Similarity=0.049 Sum_probs=51.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH---hcCCHHHHHHHHHHHHHCCCCCChhhHHHH
Q 002666 366 SVIAYNSLLTCLGKKGRVTEAMKIFEAMKKDARPNNTTYNVLIDMLC---KAGNFEDALKFRDAMKEAGLFPNVMTVNIM 442 (895)
Q Consensus 366 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~---~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 442 (895)
+...+..||..+.+.|++++....-..|..-.|.++..|...+.-.. ..++..++..+|++.+..- .++..|.-.
T Consensus 112 ~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~dy--~~v~iw~e~ 189 (881)
T KOG0128|consen 112 KYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEELFEKALGDY--NSVPIWEEV 189 (881)
T ss_pred chHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhccc--ccchHHHHH
Confidence 44556666666667777666666666666666666666655554332 2355556666666655421 122233333
Q ss_pred HHHHH-------hcCChhHHHHHHHHhhh
Q 002666 443 VDRLC-------KAQKLDEAFSIFEGMDH 464 (895)
Q Consensus 443 ~~~~~-------~~g~~~~A~~~~~~~~~ 464 (895)
+..+. ..++++.-..+|.+++.
T Consensus 190 ~~y~~~~~~~~~~~~d~k~~R~vf~ral~ 218 (881)
T KOG0128|consen 190 VNYLVGFGNVAKKSEDYKKERSVFERALR 218 (881)
T ss_pred HHHHHhccccccccccchhhhHHHHHHHh
Confidence 32222 23455666666665544
No 424
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=51.46 E-value=35 Score=20.71 Aligned_cols=26 Identities=19% Similarity=0.333 Sum_probs=17.1
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 002666 801 NITEANGLFERFKENGGVPDSACYNAMM 828 (895)
Q Consensus 801 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 828 (895)
.++.|..+|++.+. ..|++.+|...+
T Consensus 2 E~dRAR~IyeR~v~--~hp~~k~WikyA 27 (32)
T PF02184_consen 2 EFDRARSIYERFVL--VHPEVKNWIKYA 27 (32)
T ss_pred hHHHHHHHHHHHHH--hCCCchHHHHHH
Confidence 35677777777776 557766665544
No 425
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=50.81 E-value=2.5e+02 Score=27.47 Aligned_cols=83 Identities=12% Similarity=0.142 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHH
Q 002666 697 IDEAYLIMEELMQKGLTPNAYTWNCLLDALVKAEEIS-EAFVCFQSMKDLKCTPNHVTYSIIINGLCRVRKFNKAFVFWQ 775 (895)
Q Consensus 697 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 775 (895)
+.+-++.++++.+... .|-..|..-=......|++. .-+++.+.|+..+ ..+-..|.---+++..-+.++.-+.+..
T Consensus 94 L~~El~~l~eI~e~np-KNYQvWHHRr~ive~l~d~s~rELef~~~~l~~D-aKNYHaWshRqW~~r~F~~~~~EL~y~~ 171 (318)
T KOG0530|consen 94 LNKELEYLDEIIEDNP-KNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDD-AKNYHAWSHRQWVLRFFKDYEDELAYAD 171 (318)
T ss_pred HHHHHHHHHHHHHhCc-cchhHHHHHHHHHHHhcCcccchHHHHHHHHhcc-ccchhhhHHHHHHHHHHhhHHHHHHHHH
Confidence 4444555555555322 24444433222223344444 4455556665522 3344455555555555566666666666
Q ss_pred HHHHCC
Q 002666 776 EMQKQG 781 (895)
Q Consensus 776 ~~~~~~ 781 (895)
++++..
T Consensus 172 ~Lle~D 177 (318)
T KOG0530|consen 172 ELLEED 177 (318)
T ss_pred HHHHHh
Confidence 666553
No 426
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=50.27 E-value=1.6e+02 Score=25.12 Aligned_cols=42 Identities=19% Similarity=0.099 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHCCCCCCHhh-HHHHHHHHHhcCCHHHHHHHHH
Q 002666 839 DAYTLFEETRRKGFNIHTKT-CVILLDALHKAECLEQAAIVGA 880 (895)
Q Consensus 839 ~A~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~ 880 (895)
+...+|.-|..+|+...... |...+..+-..|++.+|.+|.+
T Consensus 81 dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 81 EPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 35566666666665554333 3356666667777777776543
No 427
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=49.19 E-value=39 Score=21.21 Aligned_cols=23 Identities=9% Similarity=0.169 Sum_probs=14.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHH
Q 002666 823 CYNAMMEGLSNANRAMDAYTLFE 845 (895)
Q Consensus 823 ~~~~l~~~~~~~g~~~~A~~~~~ 845 (895)
.+..++-.+...|++++|+.+++
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~ 25 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQ 25 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHH
Confidence 34556666777777777777733
No 428
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=48.15 E-value=1.8e+02 Score=24.95 Aligned_cols=43 Identities=16% Similarity=0.315 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 002666 769 KAFVFWQEMQKQGFKPN-TITYTTMISGLAKAGNITEANGLFER 811 (895)
Q Consensus 769 ~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 811 (895)
++.++|+.|..+|+--. +..|......+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 55555665555543322 34455555555555666666655554
No 429
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=47.98 E-value=3.2e+02 Score=28.95 Aligned_cols=53 Identities=21% Similarity=0.229 Sum_probs=27.2
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCcCHH--HHHHHHHHHH--ccCCHHHHHHHHHHHHH
Q 002666 656 LAKIDRLDEAYMLFEEAKSKGIELNTV--IYSSLIDGFG--KVGRIDEAYLIMEELMQ 709 (895)
Q Consensus 656 ~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~--~~g~~~~A~~~~~~~~~ 709 (895)
+...+++..|.++++.+... ++++.. .+..+..+|. ..-++.+|.+.++....
T Consensus 141 l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 141 LFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 34556666666666666654 333333 2333333332 24455666666665554
No 430
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=46.50 E-value=3.3e+02 Score=27.60 Aligned_cols=67 Identities=6% Similarity=-0.027 Sum_probs=31.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHh----CCCCcCHHHHHHHH-HHHHhcCChhHHHHHHHHHHHcCCCc
Q 002666 159 TCIELVVSCVKSKMLREAFDIIQTMRK----FKFRPAFTAYTTLI-GALATVRESNLMLNLFHQMQELGYEV 225 (895)
Q Consensus 159 ~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~~~~ 225 (895)
++.....-|++-|+-+.|.+.+....+ .|...|+..+..-+ -.|....-..+.++..+.+.+.|...
T Consensus 106 a~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDW 177 (393)
T KOG0687|consen 106 AMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDW 177 (393)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCh
Confidence 445555566666666666666654432 24444443332222 22333333344444445555555443
No 431
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=46.45 E-value=56 Score=30.88 Aligned_cols=51 Identities=16% Similarity=0.218 Sum_probs=28.9
Q ss_pred HhcCCHhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002666 762 CRVRKFNKAFVFWQEMQKQGFKPN-TITYTTMISGLAKAGNITEANGLFERFKE 814 (895)
Q Consensus 762 ~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 814 (895)
.+.++.+.|.+++.+..+ ..|. ...|--+.....+.|+++.|.+.+++.++
T Consensus 6 ~~~~D~~aaaely~qal~--lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ 57 (287)
T COG4976 6 AESGDAEAAAELYNQALE--LAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLE 57 (287)
T ss_pred cccCChHHHHHHHHHHhh--cCchhhhhhhhcchhhhhcccHHHHHHHHHHHHc
Confidence 345555666666666654 3333 34555555555566666666666666665
No 432
>PRK10941 hypothetical protein; Provisional
Probab=45.75 E-value=2.3e+02 Score=28.27 Aligned_cols=58 Identities=14% Similarity=-0.027 Sum_probs=33.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002666 372 SLLTCLGKKGRVTEAMKIFEAMKKDARPNNTTYNVLIDMLCKAGNFEDALKFRDAMKE 429 (895)
Q Consensus 372 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 429 (895)
.+-.+|.+.++++.|+.+.+.+..-.|.++.-+.--+-.|.+.|.+..|..-++..++
T Consensus 186 nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~ 243 (269)
T PRK10941 186 TLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVE 243 (269)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 3444455555666666666655555555555555555556666666666655555544
No 433
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=45.70 E-value=1.7e+02 Score=24.03 Aligned_cols=17 Identities=12% Similarity=0.128 Sum_probs=7.2
Q ss_pred hcCChhhHHHHHHHHHH
Q 002666 274 KVGKVDMAWKFFHEMKA 290 (895)
Q Consensus 274 ~~g~~~~A~~~~~~~~~ 290 (895)
+.|--+++...+.++..
T Consensus 81 klGL~~~~e~~l~rla~ 97 (116)
T PF09477_consen 81 KLGLASALESRLTRLAS 97 (116)
T ss_dssp HCT-HHHHHHHHHHHCT
T ss_pred hhccHHHHHHHHHHHHh
Confidence 44444444444444433
No 434
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=45.22 E-value=1.3e+02 Score=29.68 Aligned_cols=93 Identities=11% Similarity=0.103 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHH
Q 002666 786 TITYTTMISGLAKAGNITEANGLFERFKEN----GGVPDS-ACYNAMMEGLSNANRAMDAYTLFEETRRKGFNIHTKTCV 860 (895)
Q Consensus 786 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 860 (895)
..++..+..-|+..++.+.+.++..+..+. |...|. -+-..|+-.|....=.++-++..+.|.++|..=+....+
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRy 194 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRY 194 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhH
Confidence 456777777788888888887776665543 333332 222233334444444567777777777777544444444
Q ss_pred HHHHHH--HhcCCHHHHHHH
Q 002666 861 ILLDAL--HKAECLEQAAIV 878 (895)
Q Consensus 861 ~l~~~~--~~~g~~~~A~~~ 878 (895)
...... ....++.+|..+
T Consensus 195 K~Y~Gi~~m~~RnFkeAa~L 214 (412)
T COG5187 195 KVYKGIFKMMRRNFKEAAIL 214 (412)
T ss_pred HHHHHHHHHHHHhhHHHHHH
Confidence 322222 233566666553
No 435
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=45.13 E-value=3.2e+02 Score=27.03 Aligned_cols=95 Identities=18% Similarity=0.273 Sum_probs=48.7
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHH----CCCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHh----cCCCCCHHHHHH
Q 002666 686 SLIDGFGKVGRIDEAYLIMEELMQ----KGLTPNAYTWNCL-LDALVKAEEISEAFVCFQSMKD----LKCTPNHVTYSI 756 (895)
Q Consensus 686 ~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~----~~~~p~~~~~~~ 756 (895)
.++..+.+.|.+.+|+.+...+.. ..-+|+..+...+ -.+|..-.++.++..-+..+.. .-+||-...---
T Consensus 130 Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lD 209 (421)
T COG5159 130 KLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLD 209 (421)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHH
Confidence 466778888888888877665543 2233332222111 2234444455544443333321 123443333222
Q ss_pred HHHH--HHhcCCHhHHHHHHHHHHHC
Q 002666 757 IING--LCRVRKFNKAFVFWQEMQKQ 780 (895)
Q Consensus 757 l~~~--~~~~g~~~~A~~~~~~~~~~ 780 (895)
++++ .|...+|.-|..+|-+..+.
T Consensus 210 L~sGIlhcdd~dyktA~SYF~Ea~Eg 235 (421)
T COG5159 210 LLSGILHCDDRDYKTASSYFIEALEG 235 (421)
T ss_pred HhccceeeccccchhHHHHHHHHHhc
Confidence 3332 34556788888888777764
No 436
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=44.73 E-value=1.1e+02 Score=28.68 Aligned_cols=33 Identities=24% Similarity=0.334 Sum_probs=25.3
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002666 782 FKPNTITYTTMISGLAKAGNITEANGLFERFKE 814 (895)
Q Consensus 782 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 814 (895)
..|++.+|..++.++...|+.++|.+...++..
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 567777777777777777888888777777766
No 437
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=44.07 E-value=1.6e+02 Score=23.65 Aligned_cols=25 Identities=20% Similarity=0.058 Sum_probs=11.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 002666 789 YTTMISGLAKAGNITEANGLFERFK 813 (895)
Q Consensus 789 ~~~l~~~~~~~g~~~~A~~~~~~~~ 813 (895)
+..|.-.|.+.|+-+.|++-|+.-.
T Consensus 75 HAhLGlLys~~G~~e~a~~eFetEK 99 (121)
T COG4259 75 HAHLGLLYSNSGKDEQAVREFETEK 99 (121)
T ss_pred HHHHHHHHhhcCChHHHHHHHHHhh
Confidence 3334444445555555555444433
No 438
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=42.60 E-value=1.1e+02 Score=22.21 Aligned_cols=51 Identities=12% Similarity=0.042 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhh
Q 002666 837 AMDAYTLFEETRRKGFNIHTKTCVILLDALHKAECLEQAAIVGAVLRETAKSQ 889 (895)
Q Consensus 837 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~ 889 (895)
.++..++++.+... .-|...+...+..|...|++++|.+..+.+.+.....
T Consensus 6 ~~~~~~~~~~lR~~--RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~~~~~~ 56 (62)
T PF14689_consen 6 LEELEELIDSLRAQ--RHDFLNHLQVIYGLLQLGKYEEAKEYIKELSKDLQQE 56 (62)
T ss_dssp HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 44455555555443 4567778889999999999999999888887765543
No 439
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.50 E-value=5.1e+02 Score=28.67 Aligned_cols=48 Identities=21% Similarity=0.046 Sum_probs=23.8
Q ss_pred cCChHHHHHHHHHHHHCCCCC------------CHHhHHHHHHHHHccCCHHHHHHHHHHH
Q 002666 624 SGKVNKAYQLLEEMKTKGHYP------------TVVTYGSVIDGLAKIDRLDEAYMLFEEA 672 (895)
Q Consensus 624 ~g~~~~A~~~~~~~~~~~~~p------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 672 (895)
...+++|...|.-.... ..| .+.+...+..++..+|+.+.|..+..+.
T Consensus 251 s~sYeqaq~~F~~av~~-~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~ 310 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIV-HDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERG 310 (665)
T ss_pred chHHHHHHHHHHHHHhh-cCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 44566666666655432 111 1223334445555666666666655543
No 440
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=42.45 E-value=2.5e+02 Score=28.85 Aligned_cols=44 Identities=16% Similarity=0.173 Sum_probs=20.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 002666 823 CYNAMMEGLSNANRAMDAYTLFEETRRKGFNIHTKTCVILLDAL 866 (895)
Q Consensus 823 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 866 (895)
.|..+++.....|.+++.+.+|+++...|-.|-......+++++
T Consensus 142 YWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL 185 (353)
T PF15297_consen 142 YWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDIL 185 (353)
T ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 34444444444455545555555554444444444433444443
No 441
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=41.59 E-value=4.4e+02 Score=27.67 Aligned_cols=144 Identities=13% Similarity=0.041 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH--------HHHHhcCCHhHHHHHHHHHHHC-----C
Q 002666 715 NAYTWNCLLDALVKAEEISEAFVCFQSMKDLKCTPNHVTYSIII--------NGLCRVRKFNKAFVFWQEMQKQ-----G 781 (895)
Q Consensus 715 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~--------~~~~~~g~~~~A~~~~~~~~~~-----~ 781 (895)
+.+.+..++-.+..+.++++|..+-+.....-..-+..+++.+. ..|...|+...-..++...... .
T Consensus 125 ~aY~~lLv~Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd 204 (493)
T KOG2581|consen 125 EAYLYLLVLLFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHD 204 (493)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCc
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH--------HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 002666 782 FKPNTITYTTMISGLAKAGNITEANGLFERFK--------ENGGVPDSACYNAMMEGLSNANRAMDAYTLFEETRRKGFN 853 (895)
Q Consensus 782 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 853 (895)
...-....|.|++.|...+.++.|.++..+.. + -......+++.-.-++++..|.+.+-.++.+ .
T Consensus 205 ~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne-----~ARY~yY~GrIkaiqldYssA~~~~~qa~rk--a 277 (493)
T KOG2581|consen 205 EEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNE-----WARYLYYLGRIKAIQLDYSSALEYFLQALRK--A 277 (493)
T ss_pred chhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHH-----HHHHHHHHhhHHHhhcchhHHHHHHHHHHHh--C
Q ss_pred CCHhhHHHHHHH
Q 002666 854 IHTKTCVILLDA 865 (895)
Q Consensus 854 ~~~~~~~~l~~~ 865 (895)
|+..+.-..-.+
T Consensus 278 pq~~alGf~q~v 289 (493)
T KOG2581|consen 278 PQHAALGFRQQV 289 (493)
T ss_pred cchhhhhHHHHH
No 442
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=41.54 E-value=1.8e+02 Score=26.64 Aligned_cols=24 Identities=13% Similarity=0.206 Sum_probs=17.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 002666 406 VLIDMLCKAGNFEDALKFRDAMKE 429 (895)
Q Consensus 406 ~l~~~~~~~g~~~~A~~~~~~~~~ 429 (895)
..+..|.+.|.+++|.+++++..+
T Consensus 116 ~aV~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 116 QAVAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHHHhcCchHHHHHHHHHHhc
Confidence 345567777777777777777765
No 443
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=41.19 E-value=4.5e+02 Score=27.64 Aligned_cols=124 Identities=10% Similarity=0.056 Sum_probs=73.0
Q ss_pred CcCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHH---HhcCChhHHHHHHHHHHhCCCCCChHhH
Q 002666 189 RPAFTAYTTLIGALATVRESNLMLNLFHQMQELGYEVSVHLFTTLIRVF---AREGRVDDALFLLDEMKNNAFSVDIVLY 265 (895)
Q Consensus 189 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 265 (895)
+-.+.++..+...+...|+...|.++.++++-.- ..++......+ ...|... +.....-|...|
T Consensus 37 PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~----e~~~~~~F~~~~~~~~~g~~r---------L~~~~~eNR~ff 103 (360)
T PF04910_consen 37 PYHIDTLLQLSEVYRQQGDHAQANDLLERALFAF----ERAFHPSFSPFRSNLTSGNCR---------LDYRRPENRQFF 103 (360)
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH----HHHHHHHhhhhhcccccCccc---------cCCccccchHHH
Confidence 5677888889999999999999999988875320 01111111100 0011000 000111122223
Q ss_pred H---HHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCCHhHHHHHHHHHhh
Q 002666 266 N---VCIDCFGKVGKVDMAWKFFHEMKAQGVAPDDVTYTSMIGVLC-KSKRLEEAVAMFEQMDR 325 (895)
Q Consensus 266 ~---~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~ 325 (895)
. ..+..+.+.|.+..|.++.+-+...+..-|+..-..+|+.|+ +.++++--+++.+....
T Consensus 104 lal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 104 LALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 2 235567788888888888888887655545666666666655 66777777777776554
No 444
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=40.48 E-value=4.1e+02 Score=26.98 Aligned_cols=20 Identities=20% Similarity=0.308 Sum_probs=11.0
Q ss_pred CChHHHHHHHHHHHHCCCCC
Q 002666 625 GKVNKAYQLLEEMKTKGHYP 644 (895)
Q Consensus 625 g~~~~A~~~~~~~~~~~~~p 644 (895)
++.+....++..+.+.+..|
T Consensus 36 ~~~~~~e~l~~~Ird~~Map 55 (393)
T KOG0687|consen 36 QKAAAREKLLAAIRDEDMAP 55 (393)
T ss_pred cCHHHHHHHHHHHHhcccch
Confidence 35555556666666654443
No 445
>PRK12798 chemotaxis protein; Reviewed
Probab=40.33 E-value=4.8e+02 Score=27.70 Aligned_cols=230 Identities=11% Similarity=0.038 Sum_probs=135.2
Q ss_pred HHHHHccCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHH--HccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHH-HHcc
Q 002666 618 VDGFCKSGKVNKAYQLLEEMKTKGHYPTVVTYGSVIDGL--AKIDRLDEAYMLFEEAKSKGIELNTVIYSSLIDG-FGKV 694 (895)
Q Consensus 618 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~--~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~ 694 (895)
+-....-|++.-... +...+..++.. ..++.+. .-.|+..++.+.+..+.....++....+-.|+.+ ....
T Consensus 88 ~iy~lSGGnP~vlr~----L~~~d~~~~~d--~~L~~g~laY~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~ 161 (421)
T PRK12798 88 LIYLLSGGNPATLRK----LLARDKLGNFD--QRLADGALAYLSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVA 161 (421)
T ss_pred HhhHhcCCCHHHHHH----HHHcCCCChhh--HHHHHHHHHHHcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcc
Confidence 333445667664444 34444333332 2222222 3468999999999888777777777777777765 4455
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHH---HHHHHHHHHhcCCH
Q 002666 695 GRIDEAYLIMEELMQKGLTPNAY----TWNCLLDALVKAEEISEAFVCFQSMKDLKCTPNHVT---YSIIINGLCRVRKF 767 (895)
Q Consensus 695 g~~~~A~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~---~~~l~~~~~~~g~~ 767 (895)
.+...|+++|+...- .-|.+. ...--+......|+.+++..+-.+.... +..+++. +..+...+.+..+-
T Consensus 162 ~dP~~Al~~lD~aRL--laPGTLvEEAALRRsi~la~~~g~~~rf~~la~~Y~rR-F~~S~YA~~F~~~F~~~~~~~~d~ 238 (421)
T PRK12798 162 TDPATALKLLDQARL--LAPGTLVEEAALRRSLFIAAQLGDADKFEALARNYLRR-FRHSPYASQFAQRFVDLVVRLDDE 238 (421)
T ss_pred cCHHHHHHHHHHHHH--hCCchHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHH-hccCchHHHHHHHHHHHHHhcccc
Confidence 789999999998765 335322 2333344567789999888777776652 1222222 22333344333321
Q ss_pred hHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHH
Q 002666 768 NKAFVFWQEMQKQGFKPN--TITYTTMISGLAKAGNITEANGLFERFKENGGVP---DSACYNAMMEGLSNANRAMDAYT 842 (895)
Q Consensus 768 ~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~ 842 (895)
. -...+..++.. +.|+ ...|..+.+.-...|+.+-|.-.-++.....-.. .......-+.+-.-..++++|++
T Consensus 239 ~-~~~~l~~~ls~-~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L~~~~~~~~~ra~LY~aaa~v~s~~~~~al~ 316 (421)
T PRK12798 239 I-RDARLVEILSF-MDPERQRELYLRIARAALIDGKTELARFASERALKLADPDSADAARARLYRGAALVASDDAESALE 316 (421)
T ss_pred c-cHHHHHHHHHh-cCchhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHccCcccHHHHHH
Confidence 1 12335555543 3444 4578888888888999999998888887743211 12222122223344567888888
Q ss_pred HHHHHHHCCCCCCHhh
Q 002666 843 LFEETRRKGFNIHTKT 858 (895)
Q Consensus 843 ~~~~~~~~~~~~~~~~ 858 (895)
.+..+-....++....
T Consensus 317 ~L~~I~~~~L~~~Dr~ 332 (421)
T PRK12798 317 ELSQIDRDKLSERDRA 332 (421)
T ss_pred HHhcCChhhCChhhHH
Confidence 8888876655555543
No 446
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=40.32 E-value=30 Score=29.51 Aligned_cols=26 Identities=23% Similarity=0.349 Sum_probs=16.0
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCH
Q 002666 831 LSNANRAMDAYTLFEETRRKGFNIHT 856 (895)
Q Consensus 831 ~~~~g~~~~A~~~~~~~~~~~~~~~~ 856 (895)
+...|...+|..+|++|++.|.|||.
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~pPdd 130 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNPPDD 130 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCCCcc
Confidence 33445566666666666666666665
No 447
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=40.13 E-value=2.3e+02 Score=23.88 Aligned_cols=89 Identities=17% Similarity=0.088 Sum_probs=47.3
Q ss_pred hcCCHHHHHHHHHHHHHC--CCCC---------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----C-CCCCH-----
Q 002666 798 KAGNITEANGLFERFKEN--GGVP---------DSACYNAMMEGLSNANRAMDAYTLFEETRRK----G-FNIHT----- 856 (895)
Q Consensus 798 ~~g~~~~A~~~~~~~~~~--~~~p---------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~-~~~~~----- 856 (895)
..|.+++|..-+.++.+. .++| |..++..|..++...|++++++.-.+..+.. | ...|.
T Consensus 21 ~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWI 100 (144)
T PF12968_consen 21 QDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWI 100 (144)
T ss_dssp HHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHH
Confidence 446666666665555441 2222 1235556667777777777766665555422 2 12232
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 002666 857 KTCVILLDALHKAECLEQAAIVGAVLRETA 886 (895)
Q Consensus 857 ~~~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 886 (895)
.+.+.-+.++...|+.++|.+-+++.-++.
T Consensus 101 aaVfsra~Al~~~Gr~~eA~~~fr~agEMi 130 (144)
T PF12968_consen 101 AAVFSRAVALEGLGRKEEALKEFRMAGEMI 130 (144)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Confidence 223345566777888888877666655543
No 448
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=38.76 E-value=8.1e+02 Score=29.92 Aligned_cols=55 Identities=11% Similarity=0.128 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcCCHHHHHHH
Q 002666 369 AYNSLLTCLGKKGRVTEAMKIFEAMKKDARPN----NTTYNVLIDMLCKAGNFEDALKF 423 (895)
Q Consensus 369 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~ 423 (895)
.|..+++.+-+.+-.+.++++-..+.+..+++ ...++.+.+.....|.+-+|...
T Consensus 985 YYlkv~rlle~hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~a 1043 (1480)
T KOG4521|consen 985 YYLKVVRLLEEHNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKA 1043 (1480)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHH
Confidence 34555555666666666666555554433322 23444555555555555555543
No 449
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=38.30 E-value=1.9e+02 Score=25.58 Aligned_cols=61 Identities=13% Similarity=0.201 Sum_probs=38.0
Q ss_pred HHHhCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCh
Q 002666 182 TMRKFKFRPAFTAYTTLIGALATVRESNLMLNLFHQMQELGYEVSVHLFTTLIRVFAREGRV 243 (895)
Q Consensus 182 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 243 (895)
.+.+.|+.++.. -..++..+...+..-.|.++|+++.+.+...+..|.+..+..+...|-+
T Consensus 11 ~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Glv 71 (145)
T COG0735 11 RLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGLV 71 (145)
T ss_pred HHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCCE
Confidence 334444444332 2345566666666677888888888777667777777777766666643
No 450
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=38.16 E-value=4.3e+02 Score=32.48 Aligned_cols=155 Identities=14% Similarity=0.081 Sum_probs=94.6
Q ss_pred HHHccCCHHHHHH------HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH-------HhcCCCCCHHHHHH
Q 002666 690 GFGKVGRIDEAYL------IMEELMQKGLTPNAYTWNCLLDALVKAEEISEAFVCFQSM-------KDLKCTPNHVTYSI 756 (895)
Q Consensus 690 ~~~~~g~~~~A~~------~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~~~p~~~~~~~ 756 (895)
.....|.+.+|.+ ++......-.++....|..|...+.+.|+.++|+..-.+. .....+.+...|..
T Consensus 941 ~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~n 1020 (1236)
T KOG1839|consen 941 EALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGN 1020 (1236)
T ss_pred hhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhH
Confidence 3444556665555 5553333222335667888888888999998888765543 22222233455666
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHC-----C-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCC--CCHH
Q 002666 757 IINGLCRVRKFNKAFVFWQEMQKQ-----G-FKPN-TITYTTMISGLAKAGNITEANGLFERFKEN-----GGV--PDSA 822 (895)
Q Consensus 757 l~~~~~~~g~~~~A~~~~~~~~~~-----~-~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~--p~~~ 822 (895)
+.-.+...++...|...+.+.... | ..|. ..+.+.+-..+...++++.|++..+.+... |.. +...
T Consensus 1021 lal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~ 1100 (1236)
T KOG1839|consen 1021 LALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETAL 1100 (1236)
T ss_pred HHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhh
Confidence 666666677888888777777654 1 1333 344555555566668889999988888663 111 1455
Q ss_pred HHHHHHHHHHhcCCHHHHHHHH
Q 002666 823 CYNAMMEGLSNANRAMDAYTLF 844 (895)
Q Consensus 823 ~~~~l~~~~~~~g~~~~A~~~~ 844 (895)
++..+++.....+++..|....
T Consensus 1101 ~~~~~a~l~~s~~dfr~al~~e 1122 (1236)
T KOG1839|consen 1101 SYHALARLFESMKDFRNALEHE 1122 (1236)
T ss_pred HHHHHHHHHhhhHHHHHHHHHH
Confidence 6677777777777766655443
No 451
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=37.39 E-value=3e+02 Score=28.29 Aligned_cols=62 Identities=10% Similarity=0.168 Sum_probs=36.3
Q ss_pred hhHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCCHHhHHHHHHHH
Q 002666 279 DMAWKFFHEMKAQGVAPDDV----TYTSMIGVLCKSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGY 342 (895)
Q Consensus 279 ~~A~~~~~~~~~~g~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 342 (895)
++...++++++.. .|+.. .|..++......|.++..+.+|++++..|..|-...-..++..+
T Consensus 120 eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL 185 (353)
T PF15297_consen 120 EEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDIL 185 (353)
T ss_pred HHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 4555556655553 33432 46666666666777777777777777666665555444444443
No 452
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=36.43 E-value=1.7e+02 Score=24.21 Aligned_cols=26 Identities=23% Similarity=0.441 Sum_probs=16.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002666 404 YNVLIDMLCKAGNFEDALKFRDAMKE 429 (895)
Q Consensus 404 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 429 (895)
|..|+..|...|..++|++++.+..+
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 55666666666666666666666554
No 453
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=36.38 E-value=5.4e+02 Score=27.14 Aligned_cols=95 Identities=14% Similarity=0.116 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCC--CCChHhHHHHHHHHHhcCChhhHHHHHHHHHHC---------CCCCC
Q 002666 228 HLFTTLIRVFAREGRVDDALFLLDEMKNNAF--SVDIVLYNVCIDCFGKVGKVDMAWKFFHEMKAQ---------GVAPD 296 (895)
Q Consensus 228 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------g~~p~ 296 (895)
..+..+..-|..+|+++.|++.|.+...... ..-+..|..+|.+-.-.|+|.....+..+.... .+.+.
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence 3556667777778888888887777554321 122334445555555666666665555555442 12222
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHh
Q 002666 297 DVTYTSMIGVLCKSKRLEEAVAMFEQMD 324 (895)
Q Consensus 297 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 324 (895)
...+..|.... .+++..|.+.|-...
T Consensus 231 l~C~agLa~L~--lkkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 231 LKCAAGLANLL--LKKYKSAAKYFLLAE 256 (466)
T ss_pred hHHHHHHHHHH--HHHHHHHHHHHHhCC
Confidence 33344443333 336666666665443
No 454
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=36.22 E-value=1.8e+02 Score=28.62 Aligned_cols=57 Identities=18% Similarity=0.070 Sum_probs=32.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 002666 791 TMISGLAKAGNITEANGLFERFKEN----GGV-PDSACYNAMMEGLSNANRAMDAYTLFEET 847 (895)
Q Consensus 791 ~l~~~~~~~g~~~~A~~~~~~~~~~----~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 847 (895)
.+...|...|++++|.++|+.+... |-. +...+...+..++.+.|+.++.+.+.=++
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 4455566677777777777666421 111 13444555666666667776666654444
No 455
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.94 E-value=2.3e+02 Score=22.78 Aligned_cols=46 Identities=15% Similarity=0.139 Sum_probs=27.2
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 002666 805 ANGLFERFKENGGVPDSACYNAMMEGLSNANRAMDAYTLFEETRRK 850 (895)
Q Consensus 805 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 850 (895)
-.+.+++....+....+.....|+-.|.+.|+.+.|.+-|+.=...
T Consensus 56 le~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetEKal 101 (121)
T COG4259 56 LEKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETEKAL 101 (121)
T ss_pred HHHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHhhhh
Confidence 3344555555444334455566666777777777777777764433
No 456
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=35.39 E-value=1.2e+02 Score=22.65 Aligned_cols=33 Identities=15% Similarity=0.324 Sum_probs=23.3
Q ss_pred CHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 002666 382 RVTEAMKIFEAMKKDARPNNTTYNVLIDMLCKA 414 (895)
Q Consensus 382 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 414 (895)
+.+.|..++..+.......+..|+++...+.++
T Consensus 12 DtEmA~~mL~DLr~dekRsPQLYnAI~k~L~RH 44 (82)
T PF11123_consen 12 DTEMAQQMLADLRDDEKRSPQLYNAIGKLLDRH 44 (82)
T ss_pred HHHHHHHHHHHhcchhhcChHHHHHHHHHHHHc
Confidence 456677777777777777777888777766554
No 457
>PF10155 DUF2363: Uncharacterized conserved protein (DUF2363); InterPro: IPR019312 This entry represents a region of 120 amino acids in proteins conserved from plants to humans. Their function is not known.
Probab=35.27 E-value=2.9e+02 Score=23.69 Aligned_cols=40 Identities=15% Similarity=0.128 Sum_probs=22.3
Q ss_pred HHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 002666 215 FHQMQELGYEVSVHLFTTLIRVFAREGRVDDALFLLDEMK 254 (895)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 254 (895)
.+.+...+.......+..+-.-|.+-.+..+|-.+|+-++
T Consensus 86 l~sLir~~i~~~~~l~~evq~FClefs~i~Ea~~L~kllk 125 (126)
T PF10155_consen 86 LQSLIRNKIIDVEDLFIEVQAFCLEFSRIKEASALFKLLK 125 (126)
T ss_pred HHHHHHcCCCchHHHHhhHHHHHHHHccHHHHHHHHHHHh
Confidence 3344444444444455555555566667777777776543
No 458
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=35.07 E-value=4.7e+02 Score=26.03 Aligned_cols=66 Identities=12% Similarity=0.149 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHH----CCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 002666 682 VIYSSLIDGFGKVGRIDEAYLIMEELMQ----KGLTPNAYTWN-CLLDALVKAEEISEAFVCFQSMKDLKC 747 (895)
Q Consensus 682 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~~ 747 (895)
.++..+..-|++.++.+.+.+...+..+ .|.+.|+.... -|+..|....-+++-++..+.+.+.|.
T Consensus 116 ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGg 186 (412)
T COG5187 116 EADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGG 186 (412)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCC
Confidence 4455555556666665555555444433 23333332211 133333333344555555555555543
No 459
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=35.02 E-value=3.8e+02 Score=24.95 Aligned_cols=18 Identities=17% Similarity=0.101 Sum_probs=8.7
Q ss_pred HHhcCChhhHHHHHHHHH
Q 002666 272 FGKVGKVDMAWKFFHEMK 289 (895)
Q Consensus 272 ~~~~g~~~~A~~~~~~~~ 289 (895)
....|++++|.+-++++.
T Consensus 39 ~~H~~~~eeA~~~l~~a~ 56 (204)
T COG2178 39 LLHRGDFEEAEKKLKKAS 56 (204)
T ss_pred HHHhccHHHHHHHHHHHH
Confidence 334455555555544443
No 460
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=34.80 E-value=5.2e+02 Score=26.49 Aligned_cols=191 Identities=14% Similarity=0.126 Sum_probs=0.0
Q ss_pred HHHhhhhcCCCCCh----HHHHHHHhhcCChHHHHHHHHHhhhcCCCCCCHHHH----HHHHHHHHccCCcchHHHHHHH
Q 002666 76 VENALSSLDGMPQP----GLVIGVLRRLKDVNLAINYFRWVERKTDQAHSLEAY----NSLLMVMAVSKNFEPLEEILGE 147 (895)
Q Consensus 76 ~~~~l~~~~~~~~~----~~~~~~l~~~~~~~~a~~~f~~~~~~~~~~~~~~~~----~~l~~~l~~~~~~~~a~~~l~~ 147 (895)
....+..+...++| .....+.++.+|.+.|++|.+-+.++-.....++++ ..+++++...|+.+++.+++++
T Consensus 61 Y~NFvsefe~kINplslvei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd 140 (380)
T KOG2908|consen 61 YLNFVSEFETKINPLSLVEILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDD 140 (380)
T ss_pred HHHHHHHHhhccChHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHH
Q ss_pred HHH-----cCCCCChhh-HHHHHHHHHhcCC-----hHHHHHHHHHHHhCCCCcCH---HHHHHHHHHHHhcCChhHHHH
Q 002666 148 MSL-----AGIGPTNNT-CIELVVSCVKSKM-----LREAFDIIQTMRKFKFRPAF---TAYTTLIGALATVRESNLMLN 213 (895)
Q Consensus 148 ~~~-----~~~~~~~~~-~~~l~~~~~~~~~-----~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~ 213 (895)
... .+.++++.+ |+.+..-|.+... +..|+.++.-.--...+.+. .++..-+.++...+=|.-.+-
T Consensus 141 ~~~~ld~~~~v~~~Vh~~fY~lssqYyk~~~d~a~yYr~~L~YL~~~d~~~l~~se~~~lA~~L~~aALLGe~iyNfGEL 220 (380)
T KOG2908|consen 141 LKSMLDSLDGVTSNVHSSFYSLSSQYYKKIGDFASYYRHALLYLGCSDIDDLSESEKQDLAFDLSLAALLGENIYNFGEL 220 (380)
T ss_pred HHHHHhcccCCChhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHhccccccHHHH
Q ss_pred HHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHhHHHHHH
Q 002666 214 LFHQMQELGYEVSVHLFTTLIRVFAREGRVDDALFLLDEMKNNAFSVDIVLYNVCID 270 (895)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 270 (895)
+..=..+.=...+..-...++.++ ..|++..-..+...--+ .|+...+-..+.
T Consensus 221 L~HPilesL~gT~~eWL~dll~Af-n~Gdl~~f~~l~~~~~~---~p~L~~~e~~L~ 273 (380)
T KOG2908|consen 221 LAHPILESLKGTNREWLKDLLIAF-NSGDLKRFESLKGVWGK---QPDLASNEDFLL 273 (380)
T ss_pred HhhHHHHHhcCCcHHHHHHHHHHh-ccCCHHHHHHHHHHhcc---CchHHHHHHHHH
No 461
>PRK12798 chemotaxis protein; Reviewed
Probab=34.65 E-value=5.9e+02 Score=27.07 Aligned_cols=190 Identities=14% Similarity=0.108 Sum_probs=118.9
Q ss_pred ccCChHHHHHHHHHHHHCCCCCCHHhHHHHHHH-HHccCCHHHHHHHHHHHHHcCCCcCH----HHHHHHHHHHHccCCH
Q 002666 623 KSGKVNKAYQLLEEMKTKGHYPTVVTYGSVIDG-LAKIDRLDEAYMLFEEAKSKGIELNT----VIYSSLIDGFGKVGRI 697 (895)
Q Consensus 623 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~ 697 (895)
-.|+..++.+.+..+......+....+..|+.+ .....+..+|+++|+.+.-. .|.. .....-+......|+.
T Consensus 124 ~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~ 201 (421)
T PRK12798 124 LSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDA 201 (421)
T ss_pred HcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcH
Confidence 368999999999988877666777777777765 45567899999999998754 3332 3444445567888999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHH---HHHHHHHhcCCHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCCHhHHHH
Q 002666 698 DEAYLIMEELMQKGLTPNAYTWN---CLLDALVKAEEISEAFVCFQSMKDLKCTPN--HVTYSIIINGLCRVRKFNKAFV 772 (895)
Q Consensus 698 ~~A~~~~~~~~~~~~~p~~~~~~---~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~ 772 (895)
+++..+-...... +.-+++..+ .+..++.+.++-. -...+..++.. +.|+ ...|..+...-.-.|+.+-|..
T Consensus 202 ~rf~~la~~Y~rR-F~~S~YA~~F~~~F~~~~~~~~d~~-~~~~l~~~ls~-~d~~~q~~lYL~iAR~Ali~Gk~~lA~~ 278 (421)
T PRK12798 202 DKFEALARNYLRR-FRHSPYASQFAQRFVDLVVRLDDEI-RDARLVEILSF-MDPERQRELYLRIARAALIDGKTELARF 278 (421)
T ss_pred HHHHHHHHHHHHH-hccCchHHHHHHHHHHHHHhccccc-cHHHHHHHHHh-cCchhHHHHHHHHHHHHHHcCcHHHHHH
Confidence 9988877776663 222333322 2333444443222 12334555542 2333 3678888888888999999998
Q ss_pred HHHHHHHCCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 002666 773 FWQEMQKQGFKPNT-----ITYTTMISGLAKAGNITEANGLFERFKENGGVP 819 (895)
Q Consensus 773 ~~~~~~~~~~~p~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 819 (895)
.-++.....-..+. ..|.... -.-..++++|.+.+..+-.....|
T Consensus 279 As~~A~~L~~~~~~~~~ra~LY~aaa--~v~s~~~~~al~~L~~I~~~~L~~ 328 (421)
T PRK12798 279 ASERALKLADPDSADAARARLYRGAA--LVASDDAESALEELSQIDRDKLSE 328 (421)
T ss_pred HHHHHHHhccCCCcchHHHHHHHHHH--ccCcccHHHHHHHHhcCChhhCCh
Confidence 88888765211111 1222222 223456888887777766554554
No 462
>PF12554 MOZART1: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR022214 This family of proteins is found in eukaryotes. Proteins in this family are typically between 71 and 105 amino acids in length. There is a single completely conserved residue L that may be functionally important.
Probab=34.31 E-value=90 Score=21.21 Aligned_cols=43 Identities=14% Similarity=0.268 Sum_probs=32.6
Q ss_pred hhHHHHHHHHhhcCCCCchHHHhhhhcCCCCChHHHHHHHhhc
Q 002666 57 RTVVDDVYNILHAGPWGPAVENALSSLDGMPQPGLVIGVLRRL 99 (895)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~ 99 (895)
..++.++++++..+-....+.-.++-+...++|+.+..+.+++
T Consensus 5 ~d~l~eiS~lLntgLd~etL~ici~L~e~GVnPeaLA~vI~el 47 (48)
T PF12554_consen 5 LDVLHEISDLLNTGLDRETLSICIELCENGVNPEALAAVIKEL 47 (48)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHh
Confidence 4578889999988765566776677777778888888887765
No 463
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=33.40 E-value=4.5e+02 Score=25.33 Aligned_cols=137 Identities=16% Similarity=0.253 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHH
Q 002666 612 RAYNTVVDGFCKSGKVNKAYQLLEEMKTKGHYPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNTVIYSSLIDGF 691 (895)
Q Consensus 612 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 691 (895)
.+...-+..|.+.-++.-|....+++.+ ......+++. |.+..+..--..+.+-....+++.+.....+++ +
T Consensus 131 QAlRRtMEiyS~ttRFalaCN~s~KIiE-----PIQSRCAiLR-ysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--f 202 (333)
T KOG0991|consen 131 QALRRTMEIYSNTTRFALACNQSEKIIE-----PIQSRCAILR-YSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--F 202 (333)
T ss_pred HHHHHHHHHHcccchhhhhhcchhhhhh-----hHHhhhHhhh-hcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--h
Q ss_pred HccCCHHHHHHHHHHHHH-CC-----------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 002666 692 GKVGRIDEAYLIMEELMQ-KG-----------LTPNAYTWNCLLDALVKAEEISEAFVCFQSMKDLKCTPNHVTYSII 757 (895)
Q Consensus 692 ~~~g~~~~A~~~~~~~~~-~~-----------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 757 (895)
...|++.+|+..++.-.. .| -.|.+.....++..|.+ +++++|.+.+.++-+.|+.|....-+..
T Consensus 203 ta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~~-~~~~~A~~il~~lw~lgysp~Dii~~~F 279 (333)
T KOG0991|consen 203 TAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACLK-RNIDEALKILAELWKLGYSPEDIITTLF 279 (333)
T ss_pred hccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHHh-ccHHHHHHHHHHHHHcCCCHHHHHHHHH
No 464
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=32.86 E-value=3.3e+02 Score=25.05 Aligned_cols=22 Identities=14% Similarity=0.312 Sum_probs=14.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 002666 793 ISGLAKAGNITEANGLFERFKE 814 (895)
Q Consensus 793 ~~~~~~~g~~~~A~~~~~~~~~ 814 (895)
+..|.+.|.+++|.+++++..+
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhc
Confidence 3446677777777777776664
No 465
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=32.63 E-value=1.7e+02 Score=21.28 Aligned_cols=47 Identities=21% Similarity=0.167 Sum_probs=22.4
Q ss_pred HhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHH-----HHhcCCHHHHHHH
Q 002666 762 CRVRKFNKAFVFWQEMQKQGFKPNTITYTTMISG-----LAKAGNITEANGL 808 (895)
Q Consensus 762 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~-----~~~~g~~~~A~~~ 808 (895)
...|++-+|-++++.+-...-.|....+..+|.. ..+.|+...|.++
T Consensus 10 ~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 10 FNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred HcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 3456666666666666532122233444444443 3345555555544
No 466
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=32.50 E-value=2.1e+02 Score=25.22 Aligned_cols=59 Identities=32% Similarity=0.317 Sum_probs=27.9
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC
Q 002666 811 RFKENGGVPDSACYNAMMEGLSNANRAMDAYTLFEETRRKGFNIHTKTCVILLDALHKAE 870 (895)
Q Consensus 811 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 870 (895)
.+.+.|+.+.+. ...++..+.+.++.-.|..+++++.+.+.+....+.+.-.+.+...|
T Consensus 11 ~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 11 RLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 334444444322 23344455555555556666666665544444444444444444443
No 467
>PRK14700 recombination factor protein RarA; Provisional
Probab=32.40 E-value=5.4e+02 Score=26.00 Aligned_cols=100 Identities=14% Similarity=0.163 Sum_probs=0.0
Q ss_pred CHHhHHHHHHHHHc---cCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccC-----CHHHHHHHHHHHHHcCCCcCH
Q 002666 610 DTRAYNTVVDGFCK---SGKVNKAYQLLEEMKTKGHYPTVVTYGSVIDGLAKID-----RLDEAYMLFEEAKSKGIELNT 681 (895)
Q Consensus 610 ~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-----~~~~A~~~~~~~~~~~~~~~~ 681 (895)
+...+--+++++.+ ..+++.|+-++-+|++.|..|....-..++-+....| -...|...++.....|++-..
T Consensus 122 ~gd~HYd~iSAf~KSiRGSDpDAAlYyLArml~~GEDp~~IaRRLii~AsEDIGlAdP~al~~a~aa~~A~~~iG~PEa~ 201 (300)
T PRK14700 122 EGKEFYEQLSAFHKSVRGTDPDAAIFWLSVMLDNGVDPLVIARRMLCIASEDIGNADPQALRVAMDAWNAYEKLGMPEGR 201 (300)
T ss_pred CcchhHHHHHHHHHHhhcCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCChHHH
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 002666 682 VIYSSLIDGFGKVGRIDEAYLIMEELMQ 709 (895)
Q Consensus 682 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 709 (895)
......+-.++..-+-..+...+..+++
T Consensus 202 i~La~aviyLA~aPKSNs~y~A~~~A~~ 229 (300)
T PRK14700 202 LVLAQAAIYLAVAPKSNACYKALAQAQQ 229 (300)
T ss_pred HHHHHHHHHHHcCCCchHHHHHHHHHHH
No 468
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=32.33 E-value=1.1e+02 Score=30.28 Aligned_cols=50 Identities=16% Similarity=0.179 Sum_probs=21.0
Q ss_pred hcCCHhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002666 763 RVRKFNKAFVFWQEMQKQGFKPN-TITYTTMISGLAKAGNITEANGLFERFKE 814 (895)
Q Consensus 763 ~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 814 (895)
+.|+.++|..+|+.+.. +.|+ +.+...++.......++-+|-..|-+++.
T Consensus 128 ~~Gk~ekA~~lfeHAla--laP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALt 178 (472)
T KOG3824|consen 128 KDGKLEKAMTLFEHALA--LAPTNPQILIEMGQFREMHNEIVEADQCYVKALT 178 (472)
T ss_pred hccchHHHHHHHHHHHh--cCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeee
Confidence 44555555555554443 2232 23333333333333444444444444443
No 469
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=32.31 E-value=6.2e+02 Score=26.68 Aligned_cols=61 Identities=10% Similarity=0.067 Sum_probs=37.7
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHhHHHHHHHHHhh
Q 002666 264 LYNVCIDCFGKVGKVDMAWKFFHEMKAQGVAP---DDVTYTSMIGVLCKSKRLEEAVAMFEQMDR 325 (895)
Q Consensus 264 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 325 (895)
.+.-+..-|...|+++.|++.+.+.++- +.. ....|..+|..-.-.|+|.....+..+...
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdY-CTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDY-CTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhh-hcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 3455667777788888888888775543 111 222455555555666777766666665544
No 470
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=32.04 E-value=1e+03 Score=28.97 Aligned_cols=148 Identities=13% Similarity=0.164 Sum_probs=71.4
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH--HHHHHHHHHHHh
Q 002666 688 IDGFGKVGRIDEAYLIMEELMQKGLTPN--AYTWNCLLDALVKAEEISEAFVCFQSMKDLKCTPNH--VTYSIIINGLCR 763 (895)
Q Consensus 688 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~ 763 (895)
+.+.....+++++.+.+.. .+|. ...+..++.-....++.+....+.+.+.+...+... ......+.+|.-
T Consensus 742 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (932)
T PRK13184 742 LEALSNKEDYEKAFKHLDN-----TDPTLILYAFDLFAIQALLDEEGESIIQLLQLIYDYVSEEERHDHLLVYEIQAHLW 816 (932)
T ss_pred HHHHHccccHHHHHhhhhh-----CCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHhccCChhhhhhhhHHHHHHHHH
Confidence 4444455556666553332 2222 222333333333445555555555555543222222 122345677778
Q ss_pred cCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 002666 764 VRKFNKAFVFWQEMQKQGFKPNTITYTTMISG--LAKAGNITEANGLFERFKENGGVPDSACYNAMMEGLSNANRAMDAY 841 (895)
Q Consensus 764 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 841 (895)
..++++|-+++......-. .+.......+.+ +.-.++-+-|...|....+. .|-+.+|... ++.-.|+.++..
T Consensus 817 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~--~~~~~~~~~~~~ 891 (932)
T PRK13184 817 NRDLKKAYKLLNRYPLDLL-LDEYSEAFVLYGCYLALTEDREAAKAHFSGCRED--ALFPRSLDGD--IFDYLGKISDNL 891 (932)
T ss_pred hccHHHHHHHHHhCChhhh-ccccchHHHHHHHHHHhcCchhHHHHHHhhcccc--ccCcchhhcc--ccchhccccccc
Confidence 8889999888865543311 122222233333 34556777777777777652 2233343322 333345555555
Q ss_pred HHHH
Q 002666 842 TLFE 845 (895)
Q Consensus 842 ~~~~ 845 (895)
.+++
T Consensus 892 ~~~~ 895 (932)
T PRK13184 892 SWWE 895 (932)
T ss_pred cHHH
Confidence 4444
No 471
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=30.88 E-value=1.7e+02 Score=19.79 Aligned_cols=28 Identities=7% Similarity=0.133 Sum_probs=12.5
Q ss_pred hcCChhhHHHHHHHHHHCCCCCCHHHHH
Q 002666 274 KVGKVDMAWKFFHEMKAQGVAPDDVTYT 301 (895)
Q Consensus 274 ~~g~~~~A~~~~~~~~~~g~~p~~~~~~ 301 (895)
+.|-..++..++++|.+.|+.-+...+.
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~ 41 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIE 41 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHH
Confidence 3344444444444444444444444433
No 472
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=30.65 E-value=1.3e+02 Score=23.17 Aligned_cols=17 Identities=12% Similarity=0.095 Sum_probs=9.9
Q ss_pred hcCCHHHHHHHHHHHHH
Q 002666 868 KAECLEQAAIVGAVLRE 884 (895)
Q Consensus 868 ~~g~~~~A~~~~~~l~~ 884 (895)
....|+.|.++..+|..
T Consensus 51 ~~~~w~~ar~~~~Km~~ 67 (79)
T cd02679 51 VGSQWERARRLQQKMKT 67 (79)
T ss_pred ccHHHHHHHHHHHHHHH
Confidence 34456666666665554
No 473
>PF09384 UTP15_C: UTP15 C terminal; InterPro: IPR018983 This entry represents the C-terminal domain of the U3 small nucleolar RNA-associated protein 15 (UTP15). This protein is involved in nucleolar processing of pre-18S ribosomal RNA, and is required for optimal pre-ribosomal RNA transcription by RNA polymerase I together with a subset of U3 proteins required for transcription (t-UTPs). UTP15 is a component of the ribosomal small subunit (SSU) processome, which is a large ribonucleoprotein (RNP) required for processing of precursors to the small subunit RNA, the 18S, of the ribosome [, ]. This domain is found C-terminal to the WD40 repeat (IPR001680 from INTERPRO). UTP15 associates with U3 snoRNA, which is ubiquitous in eukaryotes and is required for nucleolar processing of pre-18S ribosomal RNA []. ; GO: 0006364 rRNA processing, 0005730 nucleolus
Probab=30.24 E-value=3.5e+02 Score=23.99 Aligned_cols=72 Identities=17% Similarity=0.239 Sum_probs=44.0
Q ss_pred HHHHHHHHhhcCCCCchHHHhhhhcCCCCChHHHHHHHhhc------------CChHHHHHHHHHhhhcCCCCCCHH---
Q 002666 59 VVDDVYNILHAGPWGPAVENALSSLDGMPQPGLVIGVLRRL------------KDVNLAINYFRWVERKTDQAHSLE--- 123 (895)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~------------~~~~~a~~~f~~~~~~~~~~~~~~--- 123 (895)
-....=+.|+..+|..++..+| ...-+|..+..++..+ ++...-..+++|+.++-+.|....
T Consensus 21 kl~~~D~~Lr~F~y~~ALD~aL---~~~~~p~~~vavl~EL~~R~~L~~AL~~Rde~~L~piL~Fl~k~i~~pr~~~~l~ 97 (148)
T PF09384_consen 21 KLSKYDKLLRKFRYKKALDAAL---VKNKSPEVVVAVLEELIRRGALRAALAGRDEESLEPILKFLIKNITDPRYTRILV 97 (148)
T ss_pred cchHHHHHHHcCCHHHHHHHHH---hcCCChHHHHHHHHHHHHccHHHHHHHhCCHHHHHHHHHHHHHhCCCcccHHHHH
Confidence 3455667788999999998888 2334566766666654 244455677777776655444433
Q ss_pred -HHHHHHHHHH
Q 002666 124 -AYNSLLMVMA 133 (895)
Q Consensus 124 -~~~~l~~~l~ 133 (895)
+...++.+|.
T Consensus 98 ~v~~~ildiY~ 108 (148)
T PF09384_consen 98 DVANIILDIYS 108 (148)
T ss_pred HHHHHHHHHHH
Confidence 3344444444
No 474
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=30.11 E-value=5.8e+02 Score=25.65 Aligned_cols=18 Identities=22% Similarity=0.665 Sum_probs=10.3
Q ss_pred hHHHHHHHHHccCChHHH
Q 002666 613 AYNTVVDGFCKSGKVNKA 630 (895)
Q Consensus 613 ~~~~l~~~~~~~g~~~~A 630 (895)
.|.-|+.+++..|+.+..
T Consensus 323 ~yaPLL~af~s~g~sEL~ 340 (412)
T KOG2297|consen 323 QYAPLLAAFCSQGQSELE 340 (412)
T ss_pred hhhHHHHHHhcCChHHHH
Confidence 455566666666665543
No 475
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=29.98 E-value=9.2e+02 Score=28.41 Aligned_cols=46 Identities=2% Similarity=0.016 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHh-cCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 002666 732 ISEAFVCFQSMKD-LKCTPNHVTYSIIINGLCRVRKFNKAFVFWQEMQK 779 (895)
Q Consensus 732 ~~~A~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 779 (895)
.++..+.++++.+ .++.-+......++.. ..|+..+|+.+++++..
T Consensus 180 ~eeIv~~L~~Il~~EgI~id~eAL~lIA~~--A~GsmRdALsLLdQAia 226 (830)
T PRK07003 180 AGHIVSHLERILGEERIAFEPQALRLLARA--AQGSMRDALSLTDQAIA 226 (830)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHH
Confidence 4555666666553 4555555555554433 46788888888777654
No 476
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=29.38 E-value=9.3e+02 Score=27.75 Aligned_cols=43 Identities=19% Similarity=0.335 Sum_probs=20.6
Q ss_pred HHHHHHHhCCCCcCH---HHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 002666 178 DIIQTMRKFKFRPAF---TAYTTLIGALATVRESNLMLNLFHQMQE 220 (895)
Q Consensus 178 ~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 220 (895)
.++.+|+.+--.|++ .+...++-.|....+|+..+++.+.+..
T Consensus 184 ~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~ 229 (1226)
T KOG4279|consen 184 DYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKR 229 (1226)
T ss_pred HHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHh
Confidence 344445443223332 2333444445555566666666665554
No 477
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=29.34 E-value=2.8e+02 Score=21.81 Aligned_cols=14 Identities=7% Similarity=0.081 Sum_probs=6.3
Q ss_pred CCHhHHHHHHHHHh
Q 002666 311 KRLEEAVAMFEQMD 324 (895)
Q Consensus 311 g~~~~A~~~~~~~~ 324 (895)
|+.+.|.+++..+.
T Consensus 50 g~~~~ar~LL~~L~ 63 (88)
T cd08819 50 GNESGARELLKRIV 63 (88)
T ss_pred CcHHHHHHHHHHhc
Confidence 44444444444444
No 478
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=29.05 E-value=6.4e+02 Score=25.82 Aligned_cols=28 Identities=21% Similarity=0.464 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 002666 697 IDEAYLIMEELMQKGLTPNAYTWNCLLDA 725 (895)
Q Consensus 697 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 725 (895)
++++..++++....+- |.++.....+.+
T Consensus 272 I~eg~all~rA~~~~~-pGPYqlqAAIaa 299 (415)
T COG4941 272 IDEGLALLDRALASRR-PGPYQLQAAIAA 299 (415)
T ss_pred HHHHHHHHHHHHHcCC-CChHHHHHHHHH
Confidence 4555555555554432 444444444433
No 479
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=28.85 E-value=9.9e+02 Score=27.94 Aligned_cols=115 Identities=15% Similarity=0.098 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH---hcCChhHHHHHH
Q 002666 383 VTEAMKIFEAMKKDARPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEAGLFPNVMTVNIMVDRLC---KAQKLDEAFSIF 459 (895)
Q Consensus 383 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~g~~~~A~~~~ 459 (895)
.+.-+..++.-....+.+...+..||..+.+.|++++...--..|.+.- +.++..|...+.... ..+...++..+|
T Consensus 95 ~~~ei~t~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~-pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ 173 (881)
T KOG0128|consen 95 GNQEIRTLEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIA-PLPPHLWLEWLKDELSMTQSEERKEVEELF 173 (881)
T ss_pred chhHHHHHHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CCChHHHHHHHHHHHhhccCcchhHHHHHH
Confidence 3344444444455566777888899999999999999888888887752 234555655544332 346777888888
Q ss_pred HHhhhCCCCCChhhHHHHHHHH-------hhcCCHHHHHHHHHHHHhC
Q 002666 460 EGMDHKTCTPDAVTFCSLIDGL-------GKNGRVDDAYKFYEKMLDT 500 (895)
Q Consensus 460 ~~~~~~~~~~~~~~~~~l~~~~-------~~~g~~~~A~~~~~~~~~~ 500 (895)
++.+..-. ++..|.-.+..+ .+.++++....+|.+++..
T Consensus 174 ekal~dy~--~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s 219 (881)
T KOG0128|consen 174 EKALGDYN--SVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRS 219 (881)
T ss_pred HHHhcccc--cchHHHHHHHHHHhccccccccccchhhhHHHHHHHhh
Confidence 87766532 333343333333 2345667777777777653
No 480
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=28.82 E-value=66 Score=27.55 Aligned_cols=31 Identities=23% Similarity=0.254 Sum_probs=21.5
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 002666 413 KAGNFEDALKFRDAMKEAGLFPNVMTVNIMVDR 445 (895)
Q Consensus 413 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 445 (895)
..|.-..|..+|.+|++.|-+|| .|+.|+..
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~ 137 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPD--DWDALLKE 137 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCc--cHHHHHHH
Confidence 34666778888888888887776 45555543
No 481
>PRK09857 putative transposase; Provisional
Probab=28.53 E-value=3.9e+02 Score=27.11 Aligned_cols=63 Identities=14% Similarity=0.243 Sum_probs=34.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 002666 372 SLLTCLGKKGRVTEAMKIFEAMKKDARPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEAGLFP 434 (895)
Q Consensus 372 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 434 (895)
.++.-..+.++.++-.++++.+....+.......+++.-+.+.|.-+++.++..+|...|+.+
T Consensus 211 ~ll~Yi~~~~~~~~~~~~~~~l~~~~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~ 273 (292)
T PRK09857 211 GLFNYILQTGDAVRFNDFIDGVAERSPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPL 273 (292)
T ss_pred HHHHHHhhccccchHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 333333445555555555555544444444444555555555565566666667776666543
No 482
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=28.45 E-value=7.5e+02 Score=26.40 Aligned_cols=59 Identities=14% Similarity=0.194 Sum_probs=30.4
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhc--C-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 002666 335 YNTMIMGYGSVGKFDEAFSLFERLKQK--G-----CIPSVIAYNSLLTCLGKKGRVTEAMKIFEAM 393 (895)
Q Consensus 335 ~~~l~~~~~~~g~~~~A~~~~~~~~~~--~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 393 (895)
...|++.++-.||+..|++.++-+.-. + ..-.+.++..++-+|.-.+++.+|++.|..+
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~i 190 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQI 190 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555666666666655543210 0 1112335555566666666666666666544
No 483
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=28.42 E-value=6.6e+02 Score=25.74 Aligned_cols=115 Identities=10% Similarity=0.115 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh------cCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 002666 733 SEAFVCFQSMKDLKCTPNHVTYSIIINGLCR------VRKFNKAFVFWQEMQKQGFKPNTITYTTMISGLAKAGNITEAN 806 (895)
Q Consensus 733 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~------~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 806 (895)
+++..++.+...++ .|-++.....|.++-. .-+|.....+|+-+.. +.|++++-.+-..+..+..-.+.++
T Consensus 273 ~eg~all~rA~~~~-~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~--~apSPvV~LNRAVAla~~~Gp~agL 349 (415)
T COG4941 273 DEGLALLDRALASR-RPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQ--AAPSPVVTLNRAVALAMREGPAAGL 349 (415)
T ss_pred HHHHHHHHHHHHcC-CCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHH--hCCCCeEeehHHHHHHHhhhHHhHH
Confidence 45555555555444 2444444444433321 1234444455554444 3344332212222222333344555
Q ss_pred HHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 002666 807 GLFERFKENGGVPD-SACYNAMMEGLSNANRAMDAYTLFEETRRK 850 (895)
Q Consensus 807 ~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 850 (895)
.+.+-+.+.+--.. ...+..-+..+.+.|+.++|..-|+..+..
T Consensus 350 a~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~L 394 (415)
T COG4941 350 AMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIAL 394 (415)
T ss_pred HHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHh
Confidence 55555544311111 122223344455556666666656555554
No 484
>PF14771 DUF4476: Domain of unknown function (DUF4476)
Probab=28.32 E-value=2.8e+02 Score=22.14 Aligned_cols=82 Identities=10% Similarity=0.064 Sum_probs=55.0
Q ss_pred HHHHHHHHhhcCCCCchHHHhhhhcCC---CCChHHHHHHHhhcCChHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHcc
Q 002666 59 VVDDVYNILHAGPWGPAVENALSSLDG---MPQPGLVIGVLRRLKDVNLAINYFRWVERKTDQAHSLEAYNSLLMVMAVS 135 (895)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~l~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~l~~~ 135 (895)
...++.+.++...|..+-...+..... ..+...+..++....-...=+++.+++. ++-.+++.|..+...+.-.
T Consensus 9 ~f~~~~~~lk~~~fd~dkl~~l~~~~~~~~~~T~~Qv~~il~~f~fd~~kl~~lk~l~---p~i~D~~n~~~i~~~f~f~ 85 (95)
T PF14771_consen 9 DFEQFLEQLKKESFDSDKLKVLEAAAKTNNCFTCAQVKQILSLFSFDNDKLKALKLLY---PYIVDPQNYYTIIDAFSFS 85 (95)
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHhcCCceeHHHHHHHHHHcCCCHHHHHHHHHHh---hhccCHHHHHHHHHHhcCc
Confidence 456778888877777654444443322 3788899999998876666777777776 3456778888888887655
Q ss_pred CCcchHHH
Q 002666 136 KNFEPLEE 143 (895)
Q Consensus 136 ~~~~~a~~ 143 (895)
.+-+++.+
T Consensus 86 s~k~~~~~ 93 (95)
T PF14771_consen 86 SDKDKARE 93 (95)
T ss_pred ccHHHHHH
Confidence 54444443
No 485
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=28.04 E-value=6.9e+02 Score=30.89 Aligned_cols=28 Identities=14% Similarity=0.194 Sum_probs=16.2
Q ss_pred cCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 002666 225 VSVHLFTTLIRVFAREGRVDDALFLLDE 252 (895)
Q Consensus 225 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 252 (895)
.....|..+...+.+.|+.++|...-.+
T Consensus 971 ~~~~~~~~La~l~~~~~d~~~Ai~~~~k 998 (1236)
T KOG1839|consen 971 EVASKYRSLAKLSNRLGDNQEAIAQQRK 998 (1236)
T ss_pred hHHHHHHHHHHHHhhhcchHHHHHhccc
Confidence 3445556666666666666666655443
No 486
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=27.71 E-value=1.3e+02 Score=19.27 Aligned_cols=26 Identities=15% Similarity=0.096 Sum_probs=16.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002666 823 CYNAMMEGLSNANRAMDAYTLFEETR 848 (895)
Q Consensus 823 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 848 (895)
+|..|+..-...+++++|..=|++.+
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL 28 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKAL 28 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 55666666666667776666666554
No 487
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=27.57 E-value=1.3e+02 Score=28.68 Aligned_cols=55 Identities=20% Similarity=0.215 Sum_probs=40.9
Q ss_pred HHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 002666 377 LGKKGRVTEAMKIFEAMKKDARPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEAG 431 (895)
Q Consensus 377 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 431 (895)
..+.+|.+.|.+++.+.....|.....|..+.....+.|+++.|.+-+++..+.+
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ld 59 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELD 59 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCC
Confidence 4456777777777777777777777777777777777778777777777777643
No 488
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=26.90 E-value=3.9e+02 Score=22.58 Aligned_cols=60 Identities=18% Similarity=0.131 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC----C-CCCCH-HHHH----HHHHHHHhcCCHHHHHHHHHH
Q 002666 787 ITYTTMISGLAKAGNITEANGLFERFKEN----G-GVPDS-ACYN----AMMEGLSNANRAMDAYTLFEE 846 (895)
Q Consensus 787 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~-~~p~~-~~~~----~l~~~~~~~g~~~~A~~~~~~ 846 (895)
..+..|..++...|++++++...++.+.. | ..-|. ..|. .-+.++...|+.++|+..|+.
T Consensus 56 ~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~ 125 (144)
T PF12968_consen 56 FCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRM 125 (144)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence 34555666666777777666555544321 2 22232 2222 233456778889998888774
No 489
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=26.61 E-value=5.8e+02 Score=24.50 Aligned_cols=101 Identities=14% Similarity=0.081 Sum_probs=65.6
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---CHHHHH--HHHHHHHhcCCHhHHHHHHHHHHHCCCCCCH
Q 002666 712 LTPNAYTWNCLLDALVKAEEISEAFVCFQSMKDLKCTP---NHVTYS--IIINGLCRVRKFNKAFVFWQEMQKQGFKPNT 786 (895)
Q Consensus 712 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p---~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 786 (895)
+.+...-+|.|+--|.-...+.+|.+.|..-.. +.| +..+++ .-|......|+.++|++....+...-+.-|.
T Consensus 22 ~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~--i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~ 99 (228)
T KOG2659|consen 22 VSVMREDLNRLVMNYLVHEGYVEAAEKFAKESG--IKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNR 99 (228)
T ss_pred cCcchhhHHHHHHHHHHhccHHHHHHHhccccC--CCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccch
Confidence 555666677777777777777777777765443 333 444444 4556677889999999888877644344454
Q ss_pred HHHHHHHHH----HHhcCCHHHHHHHHHHHHH
Q 002666 787 ITYTTMISG----LAKAGNITEANGLFERFKE 814 (895)
Q Consensus 787 ~~~~~l~~~----~~~~g~~~~A~~~~~~~~~ 814 (895)
..+-.|... +.+.|..++|++.++.-+.
T Consensus 100 ~l~F~Lq~q~lIEliR~~~~eeal~F~q~~LA 131 (228)
T KOG2659|consen 100 ELFFHLQQLHLIELIREGKTEEALEFAQTKLA 131 (228)
T ss_pred hHHHHHHHHHHHHHHHhhhHHHHHHHHHHHcc
Confidence 444443332 6678888888888776554
No 490
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=26.47 E-value=4.1e+02 Score=22.72 Aligned_cols=42 Identities=14% Similarity=0.173 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 002666 804 EANGLFERFKENGGVP-DSACYNAMMEGLSNANRAMDAYTLFE 845 (895)
Q Consensus 804 ~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~ 845 (895)
.+.++|..|...|+-- -+..|...+..+...|++++|.++++
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4444555554443322 23344444444444555555544444
No 491
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=26.36 E-value=3.3e+02 Score=21.50 Aligned_cols=38 Identities=18% Similarity=0.225 Sum_probs=21.6
Q ss_pred ccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 002666 344 SVGKFDEAFSLFERLKQKGCIPSVIAYNSLLTCLGKKGRVTEA 386 (895)
Q Consensus 344 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 386 (895)
..|+.+.|.+++..+. .| |+ .|..++.++...|.-.-|
T Consensus 48 ~~g~~~~ar~LL~~L~-rg--~~--aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 48 NHGNESGARELLKRIV-QK--EG--WFSKFLQALRETEHHELA 85 (88)
T ss_pred ccCcHHHHHHHHHHhc-cC--Cc--HHHHHHHHHHHcCchhhh
Confidence 4466666666666666 43 22 555566666555554443
No 492
>PRK13342 recombination factor protein RarA; Reviewed
Probab=25.86 E-value=8.6e+02 Score=26.20 Aligned_cols=170 Identities=14% Similarity=0.077 Sum_probs=0.0
Q ss_pred CHhHHHHHHHHHhhC---CC-CCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 002666 312 RLEEAVAMFEQMDRN---RE-VPCAYAYNTMIMGYGSVGKFDEAFSLFERLKQKGCIPSVIAYNSLLTCLGKKGRVTEAM 387 (895)
Q Consensus 312 ~~~~A~~~~~~~~~~---~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 387 (895)
..++...++.+.... +. ..+......++... .|+...+..+++.+... ...=..+...
T Consensus 152 s~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~----------------~~~It~~~v~ 213 (413)
T PRK13342 152 SEEDIEQLLKRALEDKERGLVELDDEALDALARLA--NGDARRALNLLELAALG----------------VDSITLELLE 213 (413)
T ss_pred CHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHc----------------cCCCCHHHHH
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC-----ChhHHHHHH
Q 002666 388 KIFEAMKKDARPNNTTYNVLIDMLCKA---GNFEDALKFRDAMKEAGLFPNVMTVNIMVDRLCKAQ-----KLDEAFSIF 459 (895)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~ 459 (895)
+++.............+..++.++.+. .+.+.|+.++..|.+.|..|....-..+..++...| ...-|...+
T Consensus 214 ~~~~~~~~~~d~~~~~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig~a~~~~~~~~~~~~ 293 (413)
T PRK13342 214 EALQKRAARYDKDGDEHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIGLADPNALQVAVAAA 293 (413)
T ss_pred HHHhhhhhccCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcccCHHHHHHHHHHH
Q ss_pred HHhhhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHh
Q 002666 460 EGMDHKTCTPDAVTFCSLIDGLGKNGRVDDAYKFYEKMLD 499 (895)
Q Consensus 460 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 499 (895)
+.....|.+.-.......+-.++..-+...+...+.++.+
T Consensus 294 ~~~~~~g~pe~~~~l~~~~~~l~~~pksn~~~~a~~~a~~ 333 (413)
T PRK13342 294 DAVERIGMPEGRIALAQAVIYLALAPKSNAAYTAINAALA 333 (413)
T ss_pred HHHHHhCCcHHHHHHHHHHHHHHcCCCccHHHHHHHHHHH
No 493
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=25.60 E-value=5.5e+02 Score=26.00 Aligned_cols=114 Identities=11% Similarity=0.059 Sum_probs=0.0
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCC
Q 002666 268 CIDCFGKVGKVDMAWKFFHEMKAQGVAPDDVTYTSMIGVLCKSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGK 347 (895)
Q Consensus 268 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 347 (895)
++....+.++.....+.++.+. ....-...+..+...|+|..|++++.+... -...+..+-..-.-..+
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i~------~v~~~~~~l~~ll~~~dy~~Al~li~~~~~-----~l~~l~~~~c~~~L~~~ 172 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQIK------TVQQTQSRLQELLEEGDYPGALDLIEECQQ-----LLEELKGYSCVRHLSSQ 172 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----HHHhcccchHHHHHhHH
Q ss_pred HHHHHHHHHHHHhcC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 002666 348 FDEAFSLFERLKQKG-----CIPSVIAYNSLLTCLGKKGRVTEAMKIFEA 392 (895)
Q Consensus 348 ~~~A~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 392 (895)
+.+-....+++.+.. ..-|+..|..+..+|.-.|+...+.+-+..
T Consensus 173 L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~dkl~~ 222 (291)
T PF10475_consen 173 LQETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAMDKLQM 222 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHHHHHH
No 494
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=25.42 E-value=1.3e+03 Score=28.13 Aligned_cols=272 Identities=10% Similarity=0.032 Sum_probs=0.0
Q ss_pred HHHHHHHHhhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 002666 316 AVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLFERLKQKGCIPSVIAYNSLLTCLGKKGRVTEAMKIFEAMKK 395 (895)
Q Consensus 316 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 395 (895)
+...+-.++.. ++..+-..-+..+.+.+. +.+...+..+.+. ++...-...+.++.+.+....+...+..+..
T Consensus 622 ~~~~L~~~L~D---~d~~VR~~Av~~L~~~~~-~~~~~~L~~aL~D---~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~ 694 (897)
T PRK13800 622 SVAELAPYLAD---PDPGVRRTAVAVLTETTP-PGFGPALVAALGD---GAAAVRRAAAEGLRELVEVLPPAPALRDHLG 694 (897)
T ss_pred hHHHHHHHhcC---CCHHHHHHHHHHHhhhcc-hhHHHHHHHHHcC---CCHHHHHHHHHHHHHHHhccCchHHHHHHhc
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHH
Q 002666 396 DARPNNTTYNVLIDMLCKAGNFEDALKFRDAMKEAGLFPNVMTVNIMVDRLCKAQKLDEAFSIFEGMDHKTCTPDAVTFC 475 (895)
Q Consensus 396 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 475 (895)
. +++.+-...+..+...+..+ ...+...+.+ +|...-...+.++...+..+.....+. .++..+-.
T Consensus 695 ~--~d~~VR~~A~~aL~~~~~~~-~~~l~~~L~D----~d~~VR~~Av~aL~~~~~~~~l~~~l~-------D~~~~VR~ 760 (897)
T PRK13800 695 S--PDPVVRAAALDVLRALRAGD-AALFAAALGD----PDHRVRIEAVRALVSVDDVESVAGAAT-------DENREVRI 760 (897)
T ss_pred C--CCHHHHHHHHHHHHhhccCC-HHHHHHHhcC----CCHHHHHHHHHHHhcccCcHHHHHHhc-------CCCHHHHH
Q ss_pred HHHHHHhhcCCHHH-HHHHHHHHHhCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHc
Q 002666 476 SLIDGLGKNGRVDD-AYKFYEKMLDTDQIPNAILYTSLIRNFFKHGRKEDGHKIYKEMVQRGCSPDLMLLNTYMDCVFKA 554 (895)
Q Consensus 476 ~l~~~~~~~g~~~~-A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 554 (895)
..+.++...+..+. +...+..+.+. ++...-...+.++.+.|....+...+..+++ .++..+-...+.++...
T Consensus 761 ~aa~aL~~~~~~~~~~~~~L~~ll~D---~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~---d~d~~VR~~Aa~aL~~l 834 (897)
T PRK13800 761 AVAKGLATLGAGGAPAGDAVRALTGD---PDPLVRAAALAALAELGCPPDDVAAATAALR---ASAWQVRQGAARALAGA 834 (897)
T ss_pred HHHHHHHHhccccchhHHHHHHHhcC---CCHHHHHHHHHHHHhcCCcchhHHHHHHHhc---CCChHHHHHHHHHHHhc
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 002666 555 GETEKGRALFEEIKAQGFVPDVQSYSILIHGLVKAGFAHETDQLFYAMKKQGCVLDTRAYNTVVDGF 621 (895)
Q Consensus 555 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 621 (895)
+. +++...+..+.+ .|+...-...+.++.+.+....+...+..+.+ ..|..+-.....++
T Consensus 835 ~~-~~a~~~L~~~L~---D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~---D~d~~Vr~~A~~aL 894 (897)
T PRK13800 835 AA-DVAVPALVEALT---DPHLDVRKAAVLALTRWPGDPAARDALTTALT---DSDADVRAYARRAL 894 (897)
T ss_pred cc-cchHHHHHHHhc---CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh---CCCHHHHHHHHHHH
No 495
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=25.23 E-value=2.7e+02 Score=20.20 Aligned_cols=14 Identities=21% Similarity=0.323 Sum_probs=5.0
Q ss_pred cCCHhHHHHHHHHH
Q 002666 310 SKRLEEAVAMFEQM 323 (895)
Q Consensus 310 ~g~~~~A~~~~~~~ 323 (895)
.|++=+|-++++.+
T Consensus 12 ~g~f~EaHEvlE~~ 25 (62)
T PF03745_consen 12 AGDFFEAHEVLEEL 25 (62)
T ss_dssp TT-HHHHHHHHHHH
T ss_pred CCCHHHhHHHHHHH
Confidence 33333333333333
No 496
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=24.93 E-value=7.9e+02 Score=25.99 Aligned_cols=128 Identities=13% Similarity=0.029 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHcc------CCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 002666 302 SMIGVLCKSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSV------GKFDEAFSLFERLKQKGCIPSVIAYNSLLT 375 (895)
Q Consensus 302 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 375 (895)
..+..+.+.++|..|.++|+++....+.+....+......+++. -++++|.+.++.+.......-..+...-..
T Consensus 135 ~~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~~~~~~~~~~~~~~~~~~~ 214 (380)
T TIGR02710 135 GYARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLNDPLPERLALYQVTSHDELE 214 (380)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhhccchhhhhhhhhhhhHHH
Q ss_pred HHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc------CCHHHHHHHHHHHHH
Q 002666 376 CLGKKGRVTEAMKIFEAMKKDARPNNTTYNVLIDMLCKA------GNFEDALKFRDAMKE 429 (895)
Q Consensus 376 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~------g~~~~A~~~~~~~~~ 429 (895)
...+....-.+...-............++..+...+... |+++.|...+-+.++
T Consensus 215 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~na~rr~~~~ry~da~~r~yR~~e 274 (380)
T TIGR02710 215 DVIKRNASILPEIIGSRNGRREAKRRPFLPLLGDLLANAERRATQGRYDDAAARLYRALE 274 (380)
T ss_pred HHHHhHHhhcchhhhccchhhhhcccchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
No 497
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.88 E-value=1.2e+03 Score=27.59 Aligned_cols=36 Identities=11% Similarity=0.171 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH
Q 002666 716 AYTWNCLLDALVKAEEISEAFVCFQSMKDLKCTPNH 751 (895)
Q Consensus 716 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 751 (895)
..+..+-+..+.+.+++..|-.+-.++++.+..|..
T Consensus 1084 ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~~ 1119 (1202)
T KOG0292|consen 1084 ILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPPV 1119 (1202)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCChH
Confidence 334445566677777777777777777776644444
No 498
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=24.87 E-value=7.6e+02 Score=25.25 Aligned_cols=110 Identities=13% Similarity=0.031 Sum_probs=57.2
Q ss_pred hhhHHHHHHHHHHCCC----CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHccCCHHHHHH
Q 002666 278 VDMAWKFFHEMKAQGV----APDDVTYTSMIGVLCKSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFS 353 (895)
Q Consensus 278 ~~~A~~~~~~~~~~g~----~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 353 (895)
.++|.+.|++....+. ..++.....+.....+.|+.+.-..+++..... ++......++.+++...+.+...+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~---~~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNS---TSPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTT---STHHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhcc---CCHHHHHHHHHhhhccCCHHHHHH
Confidence 4567777777776411 224444445555555666655544454444433 356666777777777777777778
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCCH--HHHHHHHH
Q 002666 354 LFERLKQKGCIPSVIAYNSLLTCLGKKGRV--TEAMKIFE 391 (895)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--~~A~~~~~ 391 (895)
+++.+...+..+..... .++..+...+.. +.+.+.+.
T Consensus 223 ~l~~~l~~~~v~~~d~~-~~~~~~~~~~~~~~~~~~~~~~ 261 (324)
T PF11838_consen 223 LLDLLLSNDKVRSQDIR-YVLAGLASSNPVGRDLAWEFFK 261 (324)
T ss_dssp HHHHHHCTSTS-TTTHH-HHHHHHH-CSTTCHHHHHHHHH
T ss_pred HHHHHcCCcccccHHHH-HHHHHHhcCChhhHHHHHHHHH
Confidence 88877775422233333 333333323332 55665554
No 499
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=24.73 E-value=1.1e+03 Score=27.28 Aligned_cols=84 Identities=6% Similarity=0.011 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHh-cCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCC---CCC----------CHHHHHHHHHHHH
Q 002666 732 ISEAFVCFQSMKD-LKCTPNHVTYSIIINGLCRVRKFNKAFVFWQEMQKQG---FKP----------NTITYTTMISGLA 797 (895)
Q Consensus 732 ~~~A~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~p----------~~~~~~~l~~~~~ 797 (895)
.++....+.+..+ .|+..+......++... .|+...|+.+++++...| +.. +......++.++
T Consensus 180 ~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~g~g~It~e~V~~lLG~~d~~~If~LldAL- 256 (709)
T PRK08691 180 AQQVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIALGSGKVAENDVRQMIGAVDKQYLYELLTGI- 256 (709)
T ss_pred HHHHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcccCHHHHHHHHHHH-
Confidence 3455555555554 46666666666665543 588888888887776532 110 111122233322
Q ss_pred hcCCHHHHHHHHHHHHHCCCC
Q 002666 798 KAGNITEANGLFERFKENGGV 818 (895)
Q Consensus 798 ~~g~~~~A~~~~~~~~~~~~~ 818 (895)
..|+...++.+++.+.+.|..
T Consensus 257 ~~~d~~~al~~l~~L~~~G~d 277 (709)
T PRK08691 257 INQDGAALLAKAQEMAACAVG 277 (709)
T ss_pred HcCCHHHHHHHHHHHHHhCCC
Confidence 335666666666666665544
No 500
>PRK09462 fur ferric uptake regulator; Provisional
Probab=24.38 E-value=4.3e+02 Score=23.35 Aligned_cols=64 Identities=13% Similarity=0.208 Sum_probs=0.0
Q ss_pred HHHHHHHhCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcC
Q 002666 178 DIIQTMRKFKFRPAFTAYTTLIGALATVRESNLMLNLFHQMQELGYEVSVHLFTTLIRVFAREG 241 (895)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 241 (895)
.+-+.+.+.|+..+..-...+-......+..-.|.++++.+.+.+...+..|.+..+..+...|
T Consensus 3 ~~~~~l~~~glr~T~qR~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~G 66 (148)
T PRK09462 3 DNNTALKKAGLKVTLPRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (148)
T ss_pred hHHHHHHHcCCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Done!