Query 002666
Match_columns 895
No_of_seqs 806 out of 4673
Neff 11.4
Searched_HMMs 29240
Date Tue Mar 26 17:31:14 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002666.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1384-1388//hhsearch_pdb/002666hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 1.0 1 1 318.9 42.2 284 575-866 304-594 (597)
2 2xpi_A Anaphase-promoting comp 1.0 1 1 315.4 43.9 179 648-831 409-594 (597)
3 1w3b_A UDP-N-acetylglucosamine 1.0 1 1 223.6 47.6 211 649-867 172-384 (388)
4 4g26_A Pentatricopeptide repea 1.0 1 1 208.6 22.5 185 195-379 29-222 (501)
5 4g26_A Pentatricopeptide repea 1.0 1 1 206.7 25.2 184 229-412 28-221 (501)
6 2gw1_A Mitochondrial precursor 1.0 1 1 202.6 41.3 227 617-850 243-478 (514)
7 2gw1_A Mitochondrial precursor 1.0 1 1 198.4 43.7 235 578-820 239-481 (514)
8 3fp2_A TPR repeat-containing p 1.0 1 1 195.8 38.9 226 583-814 250-490 (537)
9 3fp2_A TPR repeat-containing p 1.0 1 1 191.1 40.9 154 620-778 252-405 (537)
10 2y4t_A DNAJ homolog subfamily 1.0 1 1 186.4 39.3 383 171-563 6-447 (450)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=1.00 E-value=1 Score=318.89 Aligned_cols=284 Identities=13% Similarity=0.011 Sum_probs=142.8
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 99989999999995499479999999998759997877599999999805996899999999988798978876999999
Q 002666 575 DVQSYSILIHGLVKAGFAHETDQLFYAMKKQGCVLDTRAYNTVVDGFCKSGKVNKAYQLLEEMKTKGHYPTVVTYGSVID 654 (895)
Q Consensus 575 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 654 (895)
+..++..++..+.+.|++++|..+|+++.+.+ +.+..++..++.++.+.|++++|..+++.+.+.. +.+..++..++.
T Consensus 304 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 381 (597)
T 2xpi_A 304 SSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGI 381 (597)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_conf 09999999999998468999999999999729-5537999999999998277779999999998518-354799999999
Q ss_pred HHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHH
Q ss_conf 99803999899999999998699868877999999998159998999999999979999789999999999996199899
Q 002666 655 GLAKIDRLDEAYMLFEEAKSKGIELNTVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNAYTWNCLLDALVKAEEISE 734 (895)
Q Consensus 655 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 734 (895)
.|.+.|++++|..+|+++.+.. +.+...|..++..|.+.|++++|+.+|+++.+.+ +.+..++..++.+|...|++++
T Consensus 382 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~ 459 (597)
T 2xpi_A 382 YYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILL 459 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHH
T ss_conf 9998356999999999998729-7778999999999997577799999999999868-1343899999999998579999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 9999999886699999899999999998029975899999999887----99999--99999999999962999899999
Q 002666 735 AFVCFQSMKDLKCTPNHVTYSIIINGLCRVRKFNKAFVFWQEMQKQ----GFKPN--TITYTTMISGLAKAGNITEANGL 808 (895)
Q Consensus 735 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~g~~~~A~~~ 808 (895)
|...|+++.+.. +.+..+|..++.+|.+.|++++|.++++++.+. +..|+ ..+|..++.+|...|++++|.+.
T Consensus 460 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~ 538 (597)
T 2xpi_A 460 ANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDA 538 (597)
T ss_dssp HHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHC-CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_conf 999999999848-8876799999999998189999999999999853234545354999999999999980479999999
Q ss_pred HHHHHHCCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 99999779999-98889999999972099889999999998779977976699999999
Q 002666 809 FERFKENGGVP-DSACYNAMMEGLSNANRAMDAYTLFEETRRKGFNIHTKTCVILLDAL 866 (895)
Q Consensus 809 ~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 866 (895)
++++.+. .| +..+|..++.+|...|++++|...++++++.. |.+...+..|+.+|
T Consensus 539 ~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~ 594 (597)
T 2xpi_A 539 LNQGLLL--STNDANVHTAIALVYLHKKIPGLAITHLHESLAIS-PNEIMASDLLKRAL 594 (597)
T ss_dssp HHHHHHH--SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTT
T ss_pred HHHHHHH--CCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCC-CCCHHHHHHHHHHH
T ss_conf 9999973--89973899999999998178999999999997208-88748999999987
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=1.00 E-value=1 Score=315.37 Aligned_cols=179 Identities=12% Similarity=0.000 Sum_probs=80.7
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 69999999980399989999999999869986887799999999815999899999999997999978999999999999
Q 002666 648 TYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNTVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNAYTWNCLLDALV 727 (895)
Q Consensus 648 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 727 (895)
++..++.++.+.|++++|..+|+++...+ +.+..++..++..|.+.|++++|..+|+++.+.. +.+..+|..++..+.
T Consensus 409 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 486 (597)
T 2xpi_A 409 AWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAF 486 (597)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHH
T ss_conf 99999999997577799999999999868-1343899999999998579999999999999848-887679999999999
Q ss_pred HCCCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 619989999999998866----99999--899999999998029975899999999887999999999999999996299
Q 002666 728 KAEEISEAFVCFQSMKDL----KCTPN--HVTYSIIINGLCRVRKFNKAFVFWQEMQKQGFKPNTITYTTMISGLAKAGN 801 (895)
Q Consensus 728 ~~g~~~~A~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 801 (895)
..|++++|...|+++.+. +..|+ ..+|..++.+|...|++++|.+.++++.+.+ +.+..+|..++.+|...|+
T Consensus 487 ~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~ 565 (597)
T 2xpi_A 487 NKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKI 565 (597)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTC
T ss_pred HHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHCC
T ss_conf 818999999999999985323454535499999999999998047999999999999738-9973899999999998178
Q ss_pred HHHHHHHHHHHHHCCCCC-CHHHHHHHHHHH
Q ss_conf 989999999999779999-988899999999
Q 002666 802 ITEANGLFERFKENGGVP-DSACYNAMMEGL 831 (895)
Q Consensus 802 ~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~ 831 (895)
+++|.+.++++++ ..| +...+..+..+|
T Consensus 566 ~~~A~~~~~~~l~--~~p~~~~~~~~l~~~~ 594 (597)
T 2xpi_A 566 PGLAITHLHESLA--ISPNEIMASDLLKRAL 594 (597)
T ss_dssp HHHHHHHHHHHHH--HCTTCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHH--CCCCCHHHHHHHHHHH
T ss_conf 9999999999972--0888748999999987
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=1.00 E-value=1 Score=223.63 Aligned_cols=211 Identities=15% Similarity=0.098 Sum_probs=72.0
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHH
Q ss_conf 999999998039998999999999986998688779999999981599989999999999799997-8999999999999
Q 002666 649 YGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNTVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTP-NAYTWNCLLDALV 727 (895)
Q Consensus 649 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~ 727 (895)
+..+...+...|++++|...|+++...+ +.+...+..+...+...|++++|...++++... .| +..++..++..+.
T Consensus 172 ~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~ 248 (388)
T 1w3b_A 172 WSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSL--SPNHAVVHGNLACVYY 248 (388)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHH
T ss_conf 9999999998599999999999998559-886799999999999857899999999999852--9687899999999999
Q ss_pred HCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 61998999999999886699999899999999998029975899999999887999999999999999996299989999
Q 002666 728 KAEEISEAFVCFQSMKDLKCTPNHVTYSIIINGLCRVRKFNKAFVFWQEMQKQGFKPNTITYTTMISGLAKAGNITEANG 807 (895)
Q Consensus 728 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 807 (895)
..|++++|...++++.+.. +.+...+..++.++...|++++|...++++.+. .+.+..++..++..+...|++++|..
T Consensus 249 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~ 326 (388)
T 1w3b_A 249 EQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL-CPTHADSLNNLANIKREQGNIEEAVR 326 (388)
T ss_dssp HTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHCCCHHHHHH
T ss_conf 8688999999999998649-998899999999999869979999999999864-94449999999999998489999999
Q ss_pred HHHHHHHCCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 999999779999-988899999999720998899999999987799779766999999999
Q 002666 808 LFERFKENGGVP-DSACYNAMMEGLSNANRAMDAYTLFEETRRKGFNIHTKTCVILLDALH 867 (895)
Q Consensus 808 ~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 867 (895)
.++++++ ..| +...+..++.++.+.|++++|+..+++++.. .|.+...+..++.++.
T Consensus 327 ~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~-~p~~~~a~~~lg~~~~ 384 (388)
T 1w3b_A 327 LYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI-SPTFADAYSNMGNTLK 384 (388)
T ss_dssp HHHHHTT--SCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT-CTTCHHHHHHHHHHHH
T ss_pred HHHHHHH--CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHH
T ss_conf 9999986--09873999977999999868889999999999861-9997899985999998
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=1.00 E-value=1 Score=208.58 Aligned_cols=185 Identities=13% Similarity=0.166 Sum_probs=93.2
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCC---------HHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 999999999139936899999999976997589879999999994399---------46899999998758988786869
Q 002666 195 YTTLIGALATVRESNLMLNLFHQMQELGYEVSVHLFTTLIRVFAREGR---------VDDALFLLDEMKNNAFSVDIVLY 265 (895)
Q Consensus 195 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---------~~~A~~~~~~~~~~~~~~~~~~~ 265 (895)
++.++..+++.|+.++|.++|++|.+.|+.|+..+|+.++.+|++.+. ++.|.++|++|...|+.||..+|
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ty 108 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATF 108 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHH
T ss_conf 99999999859899999999999998189987839999999998578304333212499999999999980899989999
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCC
Q ss_conf 99999999439944699999999879999999999999999993499759999999985399997887699999999705
Q 002666 266 NVCIDCFGKVGKVDMAWKFFHEMKAQGVAPDDVTYTSMIGVLCKSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSV 345 (895)
Q Consensus 266 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 345 (895)
+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|...|..|+..+|+.++.+|++.
T Consensus 109 n~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~ 188 (501)
T 4g26_A 109 TNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDT 188 (501)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHC
T ss_conf 99999998469778899999999972898861110489999998889999999999998629999999999999998538
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q ss_conf 9998999999999866999788779999999993
Q 002666 346 GKFDEAFSLFERLKQKGCIPSVIAYNSLLTCLGK 379 (895)
Q Consensus 346 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 379 (895)
|+.++|.+++++|.+.+..|+..+|+.++..++.
T Consensus 189 g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 189 KNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHC
T ss_conf 9899999999999994899699999999999830
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=1.00 E-value=1 Score=206.73 Aligned_cols=184 Identities=18% Similarity=0.313 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCC---------HHHHHHHHHHHHHCCCCCCHHH
Q ss_conf 7999999999439946899999998758988786869999999994399---------4469999999987999999999
Q 002666 229 LFTTLIRVFAREGRVDDALFLLDEMKNNAFSVDIVLYNVCIDCFGKVGK---------VDMAWKFFHEMKAQGVAPDDVT 299 (895)
Q Consensus 229 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---------~~~A~~~~~~~~~~g~~p~~~~ 299 (895)
.++.++..|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.+. ++.|.++|++|...|+.||..+
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t 107 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT 107 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHH
T ss_conf 99999999985989999999999999818998783999999999857830433321249999999999998089998999
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q ss_conf 99999999934997599999999853999978876999999997059998999999999866999788779999999993
Q 002666 300 YTSMIGVLCKSKRLEEAVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLFERLKQKGCIPSVIAYNSLLTCLGK 379 (895)
Q Consensus 300 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 379 (895)
|+.++.+|++.|++++|.++|++|...+..|+..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++
T Consensus 108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~ 187 (501)
T 4g26_A 108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMD 187 (501)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
T ss_conf 99999999846977889999999997289886111048999999888999999999999862999999999999999853
Q ss_pred CCCHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHH
Q ss_conf 3997899999999743-99988778999999999
Q 002666 380 KGRVTEAMKIFEAMKK-DARPNNTTYNVLIDMLC 412 (895)
Q Consensus 380 ~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~ 412 (895)
.|+.++|.+++++|.. ...|+..+|+.++..++
T Consensus 188 ~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~ 221 (501)
T 4g26_A 188 TKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFK 221 (501)
T ss_dssp TTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 8989999999999999489969999999999983
No 6
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=202.61 Aligned_cols=227 Identities=15% Similarity=0.029 Sum_probs=85.1
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 99999805996899999999988798978876999999998039998999999999986998688779999999981599
Q 002666 617 VVDGFCKSGKVNKAYQLLEEMKTKGHYPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNTVIYSSLIDGFGKVGR 696 (895)
Q Consensus 617 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 696 (895)
++..+...|++++|...++++...... ...+..++..+...|++++|...++++.... +.+...+..++..+...|+
T Consensus 243 ~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 319 (514)
T 2gw1_A 243 TGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQN 319 (514)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHCC
T ss_conf 999999878999999999999863864--8999999999998888999999999986138-6778999999999998077
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 98999999999979999789999999999996199899999999988669999989999999999802997589999999
Q 002666 697 IDEAYLIMEELMQKGLTPNAYTWNCLLDALVKAEEISEAFVCFQSMKDLKCTPNHVTYSIIINGLCRVRKFNKAFVFWQE 776 (895)
Q Consensus 697 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~ 776 (895)
+++|...++++.+... .+...+..++..+...|++++|...++++.+.. +.+...+..++.++...|++++|...+++
T Consensus 320 ~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 397 (514)
T 2gw1_A 320 YDQAGKDFDKAKELDP-ENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDL 397 (514)
T ss_dssp TTHHHHHHHHHHHTCS-SCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 9999999999987385-028999999999998689999999999999875-46778999999999878899999999999
Q ss_pred HHHCC-CCCC----HHHHHHHHHHHHH---CCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 98879-9999----9999999999996---299989999999999779999-9888999999997209988999999999
Q 002666 777 MQKQG-FKPN----TITYTTMISGLAK---AGNITEANGLFERFKENGGVP-DSACYNAMMEGLSNANRAMDAYTLFEET 847 (895)
Q Consensus 777 ~~~~~-~~p~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 847 (895)
+.+.. -.++ ...+..++..+.. .|++++|...++++++ ..| +...+..++..+...|++++|...++++
T Consensus 398 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 475 (514)
T 2gw1_A 398 AIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASK--LDPRSEQAKIGLAQMKLQQEDIDEAITLFEES 475 (514)
T ss_dssp HHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf 9976123321789999999999998663325888999999999987--58555899999999999825799999999999
Q ss_pred HHC
Q ss_conf 877
Q 002666 848 RRK 850 (895)
Q Consensus 848 ~~~ 850 (895)
+..
T Consensus 476 ~~~ 478 (514)
T 2gw1_A 476 ADL 478 (514)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 876
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=198.36 Aligned_cols=235 Identities=13% Similarity=0.014 Sum_probs=123.5
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 89999999995499479999999998759997877599999999805996899999999988798978876999999998
Q 002666 578 SYSILIHGLVKAGFAHETDQLFYAMKKQGCVLDTRAYNTVVDGFCKSGKVNKAYQLLEEMKTKGHYPTVVTYGSVIDGLA 657 (895)
Q Consensus 578 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 657 (895)
.+..++..+...|++++|...++.+...... ...+..++..+...|++++|...++++...... +...+..++..+.
T Consensus 239 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~ 315 (514)
T 2gw1_A 239 SLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSN-NSSVYYHRGQMNF 315 (514)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTT-CTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHH
T ss_conf 9999999999878999999999999863864--899999999999888899999999998613867-7899999999999
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 03999899999999998699868877999999998159998999999999979999789999999999996199899999
Q 002666 658 KIDRLDEAYMLFEEAKSKGIELNTVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNAYTWNCLLDALVKAEEISEAFV 737 (895)
Q Consensus 658 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 737 (895)
..|++++|...++++.... +.+...+..++..+...|++++|...++.+.+.. +.+...+..++..+...|++++|..
T Consensus 316 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~ 393 (514)
T 2gw1_A 316 ILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALK 393 (514)
T ss_dssp HTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHCCHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHH
T ss_conf 8077999999999998738-5028999999999998689999999999999875-4677899999999987889999999
Q ss_pred HHHHHHHCCCC-CC----HHHHHHHHHHHHH---CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 99998866999-99----8999999999980---2997589999999988799999999999999999629998999999
Q 002666 738 CFQSMKDLKCT-PN----HVTYSIIINGLCR---VRKFNKAFVFWQEMQKQGFKPNTITYTTMISGLAKAGNITEANGLF 809 (895)
Q Consensus 738 ~~~~~~~~~~~-p~----~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 809 (895)
.++++...... +. ...+..++.++.. .|++++|...++++.+.. +.+..++..++.++...|++++|...+
T Consensus 394 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~ 472 (514)
T 2gw1_A 394 QYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLF 472 (514)
T ss_dssp HHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHCCHHHHHHHH
T ss_conf 9999997612332178999999999999866332588899999999998758-555899999999999825799999999
Q ss_pred HHHHHCCCCCC
Q ss_conf 99997799999
Q 002666 810 ERFKENGGVPD 820 (895)
Q Consensus 810 ~~~~~~~~~p~ 820 (895)
+++++ ..|+
T Consensus 473 ~~a~~--~~~~ 481 (514)
T 2gw1_A 473 EESAD--LART 481 (514)
T ss_dssp HHHHH--HCSS
T ss_pred HHHHH--HCCC
T ss_conf 99987--6614
No 8
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=1.00 E-value=1 Score=195.77 Aligned_cols=226 Identities=14% Similarity=0.010 Sum_probs=98.4
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCH
Q ss_conf 99999549947999999999875999787759999999980599689999999998879897887699999999803999
Q 002666 583 IHGLVKAGFAHETDQLFYAMKKQGCVLDTRAYNTVVDGFCKSGKVNKAYQLLEEMKTKGHYPTVVTYGSVIDGLAKIDRL 662 (895)
Q Consensus 583 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 662 (895)
...+...|++++|...+..+.... |+...+..+...+...|++++|...++++.+.... +..++..++..+...|++
T Consensus 250 g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~ 326 (537)
T 3fp2_A 250 GIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-YPPTYYHRGQMYFILQDY 326 (537)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHCCCH
T ss_conf 999875455789999999998669--87469999999999803799999999997545999-879999999999866899
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 89999999999869986887799999999815999899999999997999978999999999999619989999999998
Q 002666 663 DEAYMLFEEAKSKGIELNTVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNAYTWNCLLDALVKAEEISEAFVCFQSM 742 (895)
Q Consensus 663 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 742 (895)
++|...++++.... +.+...+..++..+...|++++|...++++.+.. +.+...+..++..+...|++++|...++++
T Consensus 327 ~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 404 (537)
T 3fp2_A 327 KNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIA 404 (537)
T ss_dssp HHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf 99999999999859-9977999999999998477999999999998739-998599999999998837889999999999
Q ss_pred HHCCC-----CCCHHHHHHHHHHHHHC----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 86699-----99989999999999802----------9975899999999887999999999999999996299989999
Q 002666 743 KDLKC-----TPNHVTYSIIINGLCRV----------RKFNKAFVFWQEMQKQGFKPNTITYTTMISGLAKAGNITEANG 807 (895)
Q Consensus 743 ~~~~~-----~p~~~~~~~l~~~~~~~----------~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 807 (895)
.+... ......+.....++... |++++|...++++.+. .+.+...+..++.++...|++++|.+
T Consensus 405 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~-~p~~~~~~~~l~~~~~~~g~~~~A~~ 483 (537)
T 3fp2_A 405 KRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL-DPRSEQAKIGLAQLKLQMEKIDEAIE 483 (537)
T ss_dssp HHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHCCHHHHHH
T ss_conf 87097624468889999988999999764010022475799999999999974-99978999999999998514999999
Q ss_pred HHHHHHH
Q ss_conf 9999997
Q 002666 808 LFERFKE 814 (895)
Q Consensus 808 ~~~~~~~ 814 (895)
.++++++
T Consensus 484 ~~~~al~ 490 (537)
T 3fp2_A 484 LFEDSAI 490 (537)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
T ss_conf 9999998
No 9
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=1.00 E-value=1 Score=191.12 Aligned_cols=154 Identities=16% Similarity=0.066 Sum_probs=54.0
Q ss_pred HHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHH
Q ss_conf 99805996899999999988798978876999999998039998999999999986998688779999999981599989
Q 002666 620 GFCKSGKVNKAYQLLEEMKTKGHYPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNTVIYSSLIDGFGKVGRIDE 699 (895)
Q Consensus 620 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 699 (895)
.+...|++++|...++++.... |+...+..+...+...|++++|...++++.... +.+..++..++..+...|++++
T Consensus 252 ~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 328 (537)
T 3fp2_A 252 FHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKN 328 (537)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHCCCHHH
T ss_conf 9875455789999999998669--874699999999998037999999999975459-9987999999999986689999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 9999999997999978999999999999619989999999998866999998999999999980299758999999998
Q 002666 700 AYLIMEELMQKGLTPNAYTWNCLLDALVKAEEISEAFVCFQSMKDLKCTPNHVTYSIIINGLCRVRKFNKAFVFWQEMQ 778 (895)
Q Consensus 700 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 778 (895)
|...++++.+.. +.+...+..++..+...|++++|...++++.+.. +.+...+..++.++...|++++|...++++.
T Consensus 329 A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 405 (537)
T 3fp2_A 329 AKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAK 405 (537)
T ss_dssp HHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf 999999999859-9977999999999998477999999999998739-9985999999999988378899999999998
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=1.00 E-value=1 Score=186.41 Aligned_cols=383 Identities=13% Similarity=0.042 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 88689999999998589876988799999999913993689999999997699758987999999999439946899999
Q 002666 171 KMLREAFDIIQTMRKFKFRPAFTAYTTLIGALATVRESNLMLNLFHQMQELGYEVSVHLFTTLIRVFAREGRVDDALFLL 250 (895)
Q Consensus 171 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 250 (895)
+....+...+....... +.+...+..++..+...|+++.|...|+++.+. .+.+...+..++..+...|++++|...|
T Consensus 6 ~~~~~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 83 (450)
T 2y4t_A 6 HHSSGVDLGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDG-DPDNYIAYYRRATVFLAMGKSKAALPDL 83 (450)
T ss_dssp ------------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCC-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 45544465642356653-789999999999999879999999999999984-9716899999999999879979999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHH------------HHHCCCHHH
Q ss_conf 99875898878686999999999439944699999999879999999---999999999------------993499759
Q 002666 251 DEMKNNAFSVDIVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGVAPDD---VTYTSMIGV------------LCKSKRLEE 315 (895)
Q Consensus 251 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~---~~~~~l~~~------------~~~~g~~~~ 315 (895)
+++.+.+ +.+...+..++.++.+.|++++|...|+++.+.... +. ..+..++.. +...|++++
T Consensus 84 ~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 161 (450)
T 2y4t_A 84 TKVIQLK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTA 161 (450)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHCC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
T ss_conf 9998449-874899999999999869999999999999724999-70168899999999999999999999998689999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHC
Q ss_conf 99999998539999788769999999970599989999999998669997887799999999933997899999999743
Q 002666 316 AVAMFEQMDRNREVPCAYAYNTMIMGYGSVGKFDEAFSLFERLKQKGCIPSVIAYNSLLTCLGKKGRVTEAMKIFEAMKK 395 (895)
Q Consensus 316 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 395 (895)
|+..|+++....+. +..++..++..|...|++++|...++++.+.... +..++..++.++...|++++|...|+.+..
T Consensus 162 A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 239 (450)
T 2y4t_A 162 AIAFLDKILEVCVW-DAELRELRAECFIKEGEPRKAISDLKAASKLKND-NTEAFYKISTLYYQLGDHELSLSEVRECLK 239 (450)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 99999999986889-7699999999998779999999999999986889-879999999999975999999999999987
Q ss_pred CCCCCHHHHHHH------------HHHHHHCCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 999887789999------------9999944998899999999988798978-----53399999999964996489999
Q 002666 396 DARPNNTTYNVL------------IDMLCKAGNFEDALKFRDAMKEAGLFPN-----VMTVNIMVDRLCKAQKLDEAFSI 458 (895)
Q Consensus 396 ~~~~~~~~~~~l------------~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~ 458 (895)
..|.+...+..+ +..+...|++++|...++++.... |+ ...+..++..+.+.|++++|...
T Consensus 240 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 317 (450)
T 2y4t_A 240 LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRSKERICHCFSKDEKPVEAIRV 317 (450)
T ss_dssp HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 599808999999999999999999999987179999999999998508--733689999999999999987889999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH------------HHHHHCC-----C
Q ss_conf 9982337999886339999999840699889999999998589986544499999------------9999539-----9
Q 002666 459 FEGMDHKTCTPDAVTFCSLIDGLGKNGRVDDAYKFYEKMLDTDQIPNAILYTSLI------------RNFFKHG-----R 521 (895)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~------------~~~~~~~-----~ 521 (895)
++.+...... +..++..++.++...|++++|...++++++..+. +...+..+. ..|...| .
T Consensus 318 ~~~a~~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~ 395 (450)
T 2y4t_A 318 CSEVLQMEPD-NVNALKDRAEAYLIEEMYDEAIQDYETAQEHNEN-DQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAK 395 (450)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCC
T ss_pred HHHHHHHCCC-CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCC
T ss_conf 9999884845-4899999999998703799999999999885935-2999999999999864335056999818986689
Q ss_pred HHHHHHHHHH-HHHCCCC--CCHH-------HHHHHHHHHHHCCCHHHHHHH
Q ss_conf 7799999999-9884999--8976-------399999999983991599999
Q 002666 522 KEDGHKIYKE-MVQRGCS--PDLM-------LLNTYMDCVFKAGETEKGRAL 563 (895)
Q Consensus 522 ~~~A~~~~~~-~~~~~~~--~~~~-------~~~~l~~~~~~~~~~~~a~~~ 563 (895)
.+++.+.++. ....... ++.. .+..+..++...++.+.....
T Consensus 396 ~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~~y 447 (450)
T 2y4t_A 396 KQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKKF 447 (450)
T ss_dssp TTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC---
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHC
T ss_conf 8999999999999759897999347899999999999999986899999763
Done!