Query 002667
Match_columns 895
No_of_seqs 264 out of 844
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 04:40:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002667.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002667hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1060 Vesicle coat complex A 100.0 2E-164 5E-169 1394.3 57.4 760 1-892 132-908 (968)
2 PTZ00429 beta-adaptin; Provisi 100.0 2.7E-80 5.9E-85 740.2 42.0 446 1-570 129-596 (746)
3 KOG1061 Vesicle coat complex A 100.0 2.5E-69 5.4E-74 623.2 30.0 444 1-568 110-574 (734)
4 PF01602 Adaptin_N: Adaptin N 100.0 2.5E-56 5.4E-61 521.0 28.8 413 1-510 103-524 (526)
5 COG5096 Vesicle coat complex, 100.0 4E-45 8.7E-50 430.0 29.6 408 1-510 116-562 (757)
6 KOG1062 Vesicle coat complex A 100.0 2.6E-37 5.6E-42 356.7 43.5 454 2-573 132-622 (866)
7 PF14796 AP3B1_C: Clathrin-ada 100.0 6.8E-36 1.5E-40 290.9 10.6 94 725-839 52-145 (145)
8 KOG1077 Vesicle coat complex A 100.0 1.1E-33 2.3E-38 321.4 28.8 428 7-546 141-605 (938)
9 KOG1058 Vesicle coat complex C 100.0 1.3E-28 2.8E-33 282.1 20.2 324 1-428 123-463 (948)
10 KOG1059 Vesicle coat complex A 99.9 2.7E-21 5.9E-26 221.9 31.8 406 1-509 133-576 (877)
11 KOG1078 Vesicle coat complex C 99.8 1.2E-17 2.6E-22 194.2 29.1 408 12-510 100-532 (865)
12 COG5240 SEC21 Vesicle coat com 99.8 1.7E-16 3.6E-21 178.8 31.3 276 215-510 271-555 (898)
13 KOG1060 Vesicle coat complex A 99.4 1.6E-09 3.6E-14 127.1 38.5 81 806-890 768-848 (968)
14 PF01602 Adaptin_N: Adaptin N 98.9 1.1E-07 2.5E-12 111.7 22.1 94 16-112 46-139 (526)
15 PTZ00429 beta-adaptin; Provisi 98.3 0.0011 2.4E-08 81.6 33.5 86 17-105 73-158 (746)
16 PRK13800 putative oxidoreducta 98.2 0.00014 3.1E-09 91.9 24.3 90 13-114 622-711 (897)
17 PF12717 Cnd1: non-SMC mitotic 98.2 6.2E-06 1.3E-10 84.5 9.7 111 3-115 16-138 (178)
18 PRK09687 putative lyase; Provi 98.1 0.00034 7.3E-09 77.0 20.7 235 13-360 24-262 (280)
19 PRK13800 putative oxidoreducta 97.8 0.0018 3.9E-08 82.1 22.8 229 11-360 651-880 (897)
20 PRK09687 putative lyase; Provi 97.8 0.0019 4.2E-08 71.1 19.6 244 211-503 26-275 (280)
21 PF10508 Proteasom_PSMB: Prote 97.4 0.053 1.1E-06 64.6 27.0 110 6-116 71-189 (503)
22 PLN03200 cellulose synthase-in 97.3 0.16 3.4E-06 68.6 31.2 198 289-508 620-858 (2102)
23 KOG1059 Vesicle coat complex A 97.2 0.14 3.1E-06 61.6 26.0 287 8-420 105-393 (877)
24 KOG1062 Vesicle coat complex A 97.2 0.058 1.3E-06 65.5 23.0 142 207-361 178-343 (866)
25 PLN03200 cellulose synthase-in 97.1 0.078 1.7E-06 71.3 25.6 352 13-471 447-863 (2102)
26 KOG2023 Nuclear transport rece 97.1 0.24 5.3E-06 59.3 26.3 411 5-510 386-854 (885)
27 KOG2171 Karyopherin (importin) 97.1 0.61 1.3E-05 59.1 31.1 405 21-512 89-551 (1075)
28 KOG2171 Karyopherin (importin) 97.0 0.33 7.1E-06 61.4 28.1 256 13-356 160-433 (1075)
29 KOG1058 Vesicle coat complex C 96.9 0.046 1E-06 65.8 19.0 64 12-78 99-162 (948)
30 cd00020 ARM Armadillo/beta-cat 96.9 0.0027 5.8E-08 58.8 7.3 101 13-114 8-118 (120)
31 KOG0212 Uncharacterized conser 96.7 0.61 1.3E-05 55.1 25.1 289 10-390 82-406 (675)
32 PF13646 HEAT_2: HEAT repeats; 96.6 0.005 1.1E-07 54.7 6.6 84 15-111 2-87 (88)
33 PF12717 Cnd1: non-SMC mitotic 96.6 0.034 7.3E-07 57.1 13.2 104 256-359 2-110 (178)
34 PF14764 SPG48: AP-5 complex s 96.6 0.065 1.4E-06 62.3 16.8 125 385-511 292-447 (459)
35 COG5096 Vesicle coat complex, 96.4 1 2.2E-05 55.8 26.1 278 12-359 92-381 (757)
36 KOG0413 Uncharacterized conser 96.2 0.36 7.8E-06 59.8 20.5 123 379-508 949-1071(1529)
37 PF02985 HEAT: HEAT repeat; I 96.1 0.0067 1.5E-07 44.3 3.3 29 13-41 1-29 (31)
38 KOG2023 Nuclear transport rece 96.0 1.1 2.3E-05 54.1 22.7 125 329-466 371-503 (885)
39 KOG2259 Uncharacterized conser 96.0 0.35 7.5E-06 58.0 18.5 88 10-99 196-293 (823)
40 KOG1824 TATA-binding protein-i 95.8 0.37 8E-06 59.7 18.1 174 311-496 129-314 (1233)
41 PF10508 Proteasom_PSMB: Prote 95.8 0.22 4.8E-06 59.4 16.3 199 257-469 16-232 (503)
42 PF05804 KAP: Kinesin-associat 95.6 1.5 3.3E-05 54.2 23.0 286 8-393 290-610 (708)
43 KOG1020 Sister chromatid cohes 95.6 9.3 0.0002 50.3 29.6 100 11-111 854-955 (1692)
44 PF13513 HEAT_EZ: HEAT-like re 95.4 0.023 5E-07 46.6 4.6 51 26-77 1-55 (55)
45 KOG0166 Karyopherin (importin) 95.4 2 4.3E-05 51.1 21.6 239 19-343 116-394 (514)
46 PF04826 Arm_2: Armadillo-like 95.2 0.88 1.9E-05 49.7 17.2 164 23-270 24-204 (254)
47 KOG1078 Vesicle coat complex C 95.2 1.3 2.8E-05 54.3 19.4 84 12-102 64-150 (865)
48 KOG0212 Uncharacterized conser 95.1 9.7 0.00021 45.5 25.6 176 315-506 252-440 (675)
49 cd00256 VATPase_H VATPase_H, r 95.1 3.2 6.9E-05 48.7 22.1 208 244-470 186-427 (429)
50 KOG0213 Splicing factor 3b, su 94.8 14 0.00031 45.5 29.7 107 11-117 552-666 (1172)
51 PF05804 KAP: Kinesin-associat 94.7 1.6 3.5E-05 54.1 19.4 284 209-510 332-649 (708)
52 KOG1241 Karyopherin (importin) 94.7 11 0.00023 46.6 25.4 355 7-470 318-713 (859)
53 KOG1241 Karyopherin (importin) 94.7 8.3 0.00018 47.5 24.4 354 5-428 399-811 (859)
54 TIGR02270 conserved hypothetic 94.7 2.2 4.8E-05 49.8 19.6 225 11-360 53-279 (410)
55 PF12755 Vac14_Fab1_bd: Vacuol 94.6 0.09 1.9E-06 49.0 6.3 67 5-71 20-89 (97)
56 PF12719 Cnd3: Nuclear condens 94.5 1.4 3E-05 48.9 16.8 123 313-474 26-149 (298)
57 smart00809 Alpha_adaptinC2 Ada 94.4 0.38 8.2E-06 44.6 10.3 84 738-847 3-87 (104)
58 COG5240 SEC21 Vesicle coat com 94.0 6.7 0.00015 46.9 21.1 130 215-347 347-482 (898)
59 PF12348 CLASP_N: CLASP N term 93.8 0.23 4.9E-06 52.4 8.5 145 206-352 51-216 (228)
60 COG5215 KAP95 Karyopherin (imp 93.8 17 0.00037 43.7 23.7 220 221-469 463-712 (858)
61 COG5181 HSH155 U2 snRNP splice 93.7 9.5 0.00021 46.0 21.8 462 10-511 356-872 (975)
62 KOG1525 Sister chromatid cohes 93.6 28 0.0006 46.1 27.7 206 294-510 238-472 (1266)
63 KOG0213 Splicing factor 3b, su 93.5 16 0.00034 45.1 23.3 76 3-78 790-869 (1172)
64 KOG1242 Protein containing ada 93.3 5.4 0.00012 48.0 19.2 110 5-116 210-324 (569)
65 PF13646 HEAT_2: HEAT repeats; 92.8 0.71 1.5E-05 40.7 8.8 84 400-502 1-84 (88)
66 TIGR02270 conserved hypothetic 92.7 8.9 0.00019 44.8 19.9 89 13-115 87-175 (410)
67 KOG1824 TATA-binding protein-i 92.3 21 0.00046 45.2 22.6 130 202-361 168-309 (1233)
68 cd00020 ARM Armadillo/beta-cat 91.8 1 2.2E-05 41.5 8.8 101 314-426 8-118 (120)
69 KOG1077 Vesicle coat complex A 90.9 49 0.0011 40.9 33.2 314 7-410 106-456 (938)
70 KOG0166 Karyopherin (importin) 90.7 2.7 5.9E-05 50.0 12.8 197 218-427 120-350 (514)
71 PF05918 API5: Apoptosis inhib 90.0 15 0.00032 44.5 18.2 80 16-97 27-106 (556)
72 PF13513 HEAT_EZ: HEAT-like re 89.0 0.46 9.9E-06 38.8 3.5 33 7-39 23-55 (55)
73 KOG1991 Nuclear transport rece 88.9 81 0.0017 40.4 28.7 54 26-79 102-156 (1010)
74 KOG1525 Sister chromatid cohes 88.8 21 0.00046 47.2 19.5 199 259-472 117-333 (1266)
75 COG1413 FOG: HEAT repeat [Ener 88.5 17 0.00036 40.6 16.7 92 11-115 42-134 (335)
76 COG5098 Chromosome condensatio 88.4 0.98 2.1E-05 54.5 6.8 70 9-78 343-414 (1128)
77 PF14797 SEEEED: Serine-rich r 88.0 0.61 1.3E-05 44.6 3.9 14 600-613 3-16 (130)
78 PF10363 DUF2435: Protein of u 87.4 2.7 5.9E-05 38.8 7.8 77 16-98 7-88 (92)
79 KOG1240 Protein kinase contain 87.1 28 0.00061 45.2 18.4 116 245-405 580-699 (1431)
80 PF02854 MIF4G: MIF4G domain; 86.8 20 0.00043 36.4 14.8 152 297-468 2-163 (209)
81 KOG2259 Uncharacterized conser 86.1 97 0.0021 38.2 26.1 69 47-116 195-263 (823)
82 KOG2160 Armadillo/beta-catenin 85.5 37 0.00081 38.7 16.9 167 294-471 99-285 (342)
83 PF02883 Alpha_adaptinC2: Adap 85.5 2.4 5.3E-05 40.0 6.7 72 739-834 8-79 (115)
84 KOG0211 Protein phosphatase 2A 85.0 15 0.00032 46.1 14.7 258 6-342 392-664 (759)
85 KOG1242 Protein containing ada 84.9 1E+02 0.0022 37.5 29.4 391 13-505 19-439 (569)
86 COG1413 FOG: HEAT repeat [Ener 84.4 21 0.00044 39.9 14.6 81 11-103 73-153 (335)
87 PF12348 CLASP_N: CLASP N term 84.3 7.6 0.00016 40.8 10.6 103 243-345 53-163 (228)
88 KOG1061 Vesicle coat complex A 83.9 23 0.0005 43.8 15.3 177 239-427 45-230 (734)
89 PF12765 Cohesin_HEAT: HEAT re 82.3 1.3 2.7E-05 35.0 2.7 25 11-35 17-41 (42)
90 PF10633 NPCBM_assoc: NPCBM-as 81.7 2.3 4.9E-05 37.6 4.5 61 759-840 6-66 (78)
91 KOG1240 Protein kinase contain 80.0 9.6 0.00021 49.1 10.4 110 7-116 573-685 (1431)
92 KOG2038 CAATT-binding transcri 79.9 1.1E+02 0.0025 38.3 18.8 69 9-78 301-369 (988)
93 COG5218 YCG1 Chromosome conden 79.6 1.2E+02 0.0026 37.1 18.4 70 9-80 129-199 (885)
94 PF08167 RIX1: rRNA processing 79.4 29 0.00062 35.3 12.2 125 238-399 20-152 (165)
95 PF12755 Vac14_Fab1_bd: Vacuol 79.1 10 0.00022 35.3 8.1 73 436-509 24-96 (97)
96 COG1470 Predicted membrane pro 76.7 6.5 0.00014 46.0 7.2 64 761-845 400-463 (513)
97 COG5181 HSH155 U2 snRNP splice 76.7 2E+02 0.0042 35.5 21.1 74 4-78 596-674 (975)
98 PF12530 DUF3730: Protein of u 76.3 1E+02 0.0022 33.1 16.0 123 216-341 9-150 (234)
99 PF12719 Cnd3: Nuclear condens 75.8 1.4E+02 0.0029 33.3 18.7 128 208-358 26-160 (298)
100 KOG4224 Armadillo repeat prote 74.8 89 0.0019 36.0 15.1 245 17-344 132-407 (550)
101 KOG4224 Armadillo repeat prote 73.9 46 0.00099 38.2 12.6 252 14-347 169-451 (550)
102 PF02985 HEAT: HEAT repeat; I 72.8 4.5 9.8E-05 29.4 3.1 28 51-78 1-28 (31)
103 PF10363 DUF2435: Protein of u 72.1 35 0.00077 31.5 9.6 31 315-345 5-35 (92)
104 smart00543 MIF4G Middle domain 72.0 1.2E+02 0.0025 30.7 15.4 57 301-360 7-63 (200)
105 KOG2140 Uncharacterized conser 71.0 54 0.0012 39.3 12.7 116 296-420 165-297 (739)
106 PF01603 B56: Protein phosphat 71.0 95 0.0021 36.4 15.2 125 377-505 191-321 (409)
107 PF04826 Arm_2: Armadillo-like 70.1 30 0.00064 37.9 10.1 101 14-116 56-163 (254)
108 PF03224 V-ATPase_H_N: V-ATPas 70.1 31 0.00067 38.5 10.6 65 50-116 59-134 (312)
109 smart00638 LPD_N Lipoprotein N 69.8 2.2E+02 0.0049 34.5 18.6 193 292-511 340-544 (574)
110 KOG1020 Sister chromatid cohes 69.7 73 0.0016 42.6 14.5 148 310-473 813-965 (1692)
111 PF08713 DNA_alkylation: DNA a 69.1 8.2 0.00018 40.1 5.4 88 11-104 119-206 (213)
112 KOG2081 Nuclear transport regu 68.8 25 0.00054 42.2 9.6 110 328-450 367-479 (559)
113 KOG3723 PH domain protein Melt 67.5 33 0.00072 41.1 10.1 135 313-451 137-286 (851)
114 KOG0414 Chromosome condensatio 66.3 2.6E+02 0.0056 36.9 18.0 213 240-472 193-432 (1251)
115 KOG0211 Protein phosphatase 2A 65.8 3.7E+02 0.0081 34.2 25.1 91 13-105 238-333 (759)
116 KOG1832 HIV-1 Vpr-binding prot 65.6 5.5 0.00012 49.5 3.6 54 287-340 753-822 (1516)
117 KOG1943 Beta-tubulin folding c 65.5 4.2E+02 0.0092 34.7 26.1 108 6-113 418-551 (1133)
118 KOG1991 Nuclear transport rece 64.5 3.3E+02 0.0071 35.3 18.3 102 206-307 125-272 (1010)
119 PF05918 API5: Apoptosis inhib 64.4 33 0.00072 41.6 9.8 102 6-114 53-160 (556)
120 PF04078 Rcd1: Cell differenti 64.2 38 0.00081 37.3 9.3 184 213-420 29-227 (262)
121 KOG0414 Chromosome condensatio 63.6 22 0.00048 45.9 8.3 110 4-116 990-1102(1251)
122 cd03568 VHS_STAM VHS domain fa 63.1 81 0.0017 31.6 10.8 72 208-281 4-76 (144)
123 COG5116 RPN2 26S proteasome re 63.0 27 0.00059 42.0 8.3 97 377-482 568-664 (926)
124 PF04931 DNA_pol_phi: DNA poly 62.9 6.3 0.00014 49.8 3.6 6 532-537 589-594 (784)
125 PF14500 MMS19_N: Dos2-interac 62.7 1.1E+02 0.0023 33.8 12.6 67 316-391 2-70 (262)
126 KOG2160 Armadillo/beta-catenin 62.4 33 0.00071 39.1 8.7 95 20-116 132-240 (342)
127 KOG2274 Predicted importin 9 [ 62.1 3.8E+02 0.0083 34.5 18.0 61 18-78 96-156 (1005)
128 PF05536 Neurochondrin: Neuroc 62.0 2.5E+02 0.0055 34.2 16.8 178 290-508 69-259 (543)
129 PF08631 SPO22: Meiosis protei 59.6 2.7E+02 0.0059 30.5 17.9 151 206-357 12-185 (278)
130 PF14631 FancD2: Fanconi anaem 58.7 66 0.0014 43.6 11.9 126 207-334 434-575 (1426)
131 cd06561 AlkD_like A new struct 57.7 20 0.00044 36.7 5.7 63 15-79 108-170 (197)
132 PF06685 DUF1186: Protein of u 57.5 29 0.00063 38.0 7.0 75 15-90 114-195 (249)
133 KOG0915 Uncharacterized conser 57.3 5.7E+02 0.012 34.9 19.1 148 201-348 1270-1433(1702)
134 PF05004 IFRD: Interferon-rela 56.7 3.3E+02 0.0072 30.6 18.9 90 14-103 45-145 (309)
135 PF06685 DUF1186: Protein of u 56.0 1.4E+02 0.0031 32.7 12.0 80 315-404 113-194 (249)
136 PF11698 V-ATPase_H_C: V-ATPas 55.0 20 0.00044 34.8 4.8 74 393-470 38-117 (119)
137 KOG2032 Uncharacterized conser 54.8 4.6E+02 0.0099 31.6 19.7 106 9-115 255-373 (533)
138 KOG4653 Uncharacterized conser 54.6 5.1E+02 0.011 33.3 17.3 212 279-511 684-919 (982)
139 KOG1932 TATA binding protein a 54.3 2.5E+02 0.0053 36.9 15.0 252 202-501 628-924 (1180)
140 PF10274 ParcG: Parkin co-regu 54.2 22 0.00048 37.1 5.3 51 47-97 77-130 (183)
141 PF10521 DUF2454: Protein of u 54.0 1.6E+02 0.0035 32.5 12.4 121 240-360 116-271 (282)
142 smart00638 LPD_N Lipoprotein N 54.0 25 0.00053 42.7 6.5 77 1-81 470-547 (574)
143 COG5593 Nucleic-acid-binding p 53.5 1.5E+02 0.0033 35.6 12.2 134 226-360 104-275 (821)
144 PF10274 ParcG: Parkin co-regu 53.4 60 0.0013 33.9 8.2 50 9-59 77-126 (183)
145 KOG2956 CLIP-associating prote 52.9 1.7E+02 0.0036 34.9 12.4 165 257-471 302-480 (516)
146 PF05110 AF-4: AF-4 proto-onco 52.7 16 0.00035 48.0 4.8 13 78-90 27-39 (1191)
147 PF14663 RasGEF_N_2: Rapamycin 52.1 17 0.00036 34.9 3.7 37 45-81 3-39 (115)
148 KOG1248 Uncharacterized conser 51.2 7.3E+02 0.016 33.0 23.3 76 434-510 780-856 (1176)
149 PF14664 RICTOR_N: Rapamycin-i 50.7 1E+02 0.0022 35.6 10.5 17 379-395 126-142 (371)
150 PF01347 Vitellogenin_N: Lipop 50.7 1.5E+02 0.0032 36.3 12.5 194 291-511 377-588 (618)
151 cd03569 VHS_Hrs_Vps27p VHS dom 48.9 1.3E+02 0.0027 30.1 9.5 73 207-281 7-80 (142)
152 KOG0915 Uncharacterized conser 47.6 9.3E+02 0.02 33.1 22.2 78 25-103 970-1054(1702)
153 PF04388 Hamartin: Hamartin pr 47.4 1.8E+02 0.0039 36.4 12.5 112 276-405 39-155 (668)
154 PF13981 SopA: SopA-like centr 46.9 65 0.0014 32.0 7.0 106 399-508 7-121 (135)
155 KOG1943 Beta-tubulin folding c 46.5 60 0.0013 41.9 8.1 80 5-84 334-414 (1133)
156 PF00790 VHS: VHS domain; Int 46.1 60 0.0013 32.0 6.7 73 207-281 8-81 (140)
157 PF13251 DUF4042: Domain of un 46.0 1.1E+02 0.0025 31.9 8.9 50 258-307 2-69 (182)
158 KOG2274 Predicted importin 9 [ 45.9 7.9E+02 0.017 31.8 23.2 67 49-115 490-558 (1005)
159 KOG1992 Nuclear export recepto 45.7 7.7E+02 0.017 31.7 23.2 104 12-123 6-122 (960)
160 KOG1189 Global transcriptional 45.0 15 0.00033 45.2 2.7 12 23-34 9-20 (960)
161 PF12460 MMS19_C: RNAPII trans 44.6 5.7E+02 0.012 29.8 19.4 182 292-488 204-414 (415)
162 PF06483 ChiC: Chitinase C; I 44.4 89 0.0019 32.5 7.6 112 740-857 34-164 (180)
163 KOG1949 Uncharacterized conser 44.2 68 0.0015 39.7 7.7 104 9-115 217-330 (1005)
164 smart00567 EZ_HEAT E-Z type HE 44.0 33 0.00072 24.4 3.4 29 26-61 1-29 (30)
165 PF10521 DUF2454: Protein of u 43.5 1.4E+02 0.003 33.0 9.8 74 6-79 113-203 (282)
166 KOG1949 Uncharacterized conser 43.3 48 0.001 40.9 6.4 75 11-85 173-255 (1005)
167 PF11935 DUF3453: Domain of un 43.1 3.5E+02 0.0076 29.3 12.6 111 241-360 41-163 (239)
168 PF08167 RIX1: rRNA processing 43.0 2E+02 0.0043 29.2 10.1 43 241-284 114-156 (165)
169 KOG0567 HEAT repeat-containing 42.4 48 0.001 36.6 5.7 61 13-78 188-248 (289)
170 KOG1820 Microtubule-associated 41.7 3.1E+02 0.0066 35.2 13.3 71 8-79 249-324 (815)
171 cd03561 VHS VHS domain family; 41.4 87 0.0019 30.6 7.0 71 209-281 5-76 (133)
172 KOG2025 Chromosome condensatio 40.8 61 0.0013 40.2 6.7 63 9-72 123-186 (892)
173 KOG2011 Sister chromatid cohes 40.0 58 0.0013 42.2 6.7 125 380-509 264-398 (1048)
174 PF11701 UNC45-central: Myosin 39.9 62 0.0014 32.6 5.9 92 23-115 16-116 (157)
175 TIGR01451 B_ant_repeat conserv 39.3 37 0.00081 28.0 3.4 31 758-792 12-42 (53)
176 cd00197 VHS_ENTH_ANTH VHS, ENT 39.3 1.1E+02 0.0023 29.0 7.0 97 208-306 4-114 (115)
177 cd03567 VHS_GGA VHS domain fam 39.3 93 0.002 31.0 6.8 72 208-281 5-77 (139)
178 KOG2051 Nonsense-mediated mRNA 39.1 6.2E+02 0.014 33.2 15.1 97 414-512 520-616 (1128)
179 PF00514 Arm: Armadillo/beta-c 39.1 43 0.00092 25.6 3.5 27 13-39 13-39 (41)
180 PF11611 DUF4352: Domain of un 38.9 94 0.002 29.1 6.6 74 757-845 35-112 (123)
181 PF12830 Nipped-B_C: Sister ch 38.9 1.1E+02 0.0024 31.6 7.7 81 8-89 4-84 (187)
182 KOG1832 HIV-1 Vpr-binding prot 38.7 33 0.00072 43.2 4.2 15 256-270 676-690 (1516)
183 PHA02664 hypothetical protein; 38.5 23 0.00049 39.5 2.6 27 334-360 242-268 (534)
184 cd03565 VHS_Tom1 VHS domain fa 37.9 1.8E+02 0.0039 29.0 8.6 73 207-281 4-78 (141)
185 KOG2956 CLIP-associating prote 37.7 1.7E+02 0.0037 34.9 9.4 96 13-115 330-434 (516)
186 PF14664 RICTOR_N: Rapamycin-i 37.0 7.2E+02 0.016 28.8 16.1 144 314-472 109-273 (371)
187 COG5215 KAP95 Karyopherin (imp 36.9 9E+02 0.02 29.9 22.4 279 8-362 362-692 (858)
188 PRK15098 beta-D-glucoside gluc 36.8 74 0.0016 40.4 7.0 60 757-835 666-728 (765)
189 KOG1517 Guanine nucleotide bin 36.6 67 0.0015 41.4 6.4 64 15-79 603-671 (1387)
190 PF14837 INTS5_N: Integrator c 36.5 2.7E+02 0.0058 30.0 10.0 47 312-358 2-52 (213)
191 PF14874 PapD-like: Flagellar- 36.4 2.4E+02 0.0053 25.6 8.8 74 760-858 22-99 (102)
192 PF11865 DUF3385: Domain of un 35.3 2E+02 0.0044 29.1 8.7 37 6-46 8-44 (160)
193 PF04931 DNA_pol_phi: DNA poly 35.0 37 0.00081 43.0 4.1 10 350-359 392-401 (784)
194 KOG1967 DNA repair/transcripti 34.9 4.6E+02 0.0099 33.9 12.9 147 308-469 38-199 (1030)
195 KOG2973 Uncharacterized conser 34.5 1.3E+02 0.0029 34.0 7.7 65 14-80 5-72 (353)
196 PF08161 NUC173: NUC173 domain 34.3 5.5E+02 0.012 27.1 12.0 32 239-270 167-198 (198)
197 PF12530 DUF3730: Protein of u 33.8 1.8E+02 0.0038 31.3 8.5 65 31-96 103-168 (234)
198 PF12765 Cohesin_HEAT: HEAT re 33.8 68 0.0015 25.2 3.9 38 35-73 2-41 (42)
199 COG5098 Chromosome condensatio 33.0 7.2E+02 0.016 31.4 13.7 167 293-471 237-418 (1128)
200 cd07064 AlkD_like_1 A new stru 33.0 1.3E+02 0.0029 31.7 7.2 62 14-78 117-178 (208)
201 PF12231 Rif1_N: Rap1-interact 31.5 4.7E+02 0.01 30.1 12.0 32 434-469 174-205 (372)
202 KOG1293 Proteins containing ar 30.6 2.8E+02 0.006 34.4 9.9 40 244-288 420-460 (678)
203 PF06524 NOA36: NOA36 protein; 30.3 62 0.0014 35.4 4.2 10 559-568 229-238 (314)
204 cd00256 VATPase_H VATPase_H, r 30.3 3.6E+02 0.0078 32.0 10.8 67 243-309 53-132 (429)
205 PF05753 TRAP_beta: Translocon 30.3 84 0.0018 32.7 5.1 58 758-833 38-96 (181)
206 PF05327 RRN3: RNA polymerase 30.1 6.6E+02 0.014 30.8 13.4 131 311-449 71-211 (563)
207 COG5537 IRR1 Cohesin [Cell div 29.7 1.5E+02 0.0031 36.4 7.3 110 388-501 260-377 (740)
208 PF06524 NOA36: NOA36 protein; 29.2 54 0.0012 35.9 3.5 7 557-563 180-186 (314)
209 PF14837 INTS5_N: Integrator c 29.0 1.6E+02 0.0035 31.6 6.9 86 204-323 6-92 (213)
210 PF11698 V-ATPase_H_C: V-ATPas 28.7 1.2E+02 0.0027 29.5 5.5 70 312-392 42-117 (119)
211 PF01345 DUF11: Domain of unkn 28.6 64 0.0014 28.1 3.4 30 758-791 41-70 (76)
212 PF04821 TIMELESS: Timeless pr 28.1 4.6E+02 0.01 28.8 10.7 62 244-311 14-76 (266)
213 KOG4653 Uncharacterized conser 27.5 4.7E+02 0.01 33.6 11.3 147 212-360 731-898 (982)
214 KOG1684 Enoyl-CoA hydratase [L 27.4 1.3E+02 0.0028 34.7 6.2 65 289-360 256-321 (401)
215 PF14500 MMS19_N: Dos2-interac 27.3 8.6E+02 0.019 26.7 19.8 101 246-346 126-241 (262)
216 KOG0946 ER-Golgi vesicle-tethe 27.1 9.2E+02 0.02 30.9 13.5 128 244-395 62-200 (970)
217 KOG2236 Uncharacterized conser 26.9 67 0.0014 37.8 3.9 34 717-750 277-312 (483)
218 KOG0168 Putative ubiquitin fus 26.9 72 0.0016 40.3 4.4 83 6-91 553-641 (1051)
219 PF12460 MMS19_C: RNAPII trans 26.8 2.2E+02 0.0047 33.2 8.3 85 12-97 323-412 (415)
220 PF05327 RRN3: RNA polymerase 26.6 6.8E+02 0.015 30.7 12.7 70 329-408 52-121 (563)
221 COG2847 Copper(I)-binding prot 26.4 2.3E+02 0.0051 28.8 7.2 104 741-861 25-131 (151)
222 PLN03076 ARF guanine nucleotid 26.0 1.4E+03 0.03 32.3 16.3 126 219-344 1148-1301(1780)
223 PF07571 DUF1546: Protein of u 25.8 2E+02 0.0043 26.5 6.2 60 22-81 16-80 (92)
224 smart00288 VHS Domain present 25.8 2.5E+02 0.0054 27.5 7.3 72 208-281 4-76 (133)
225 KOG1293 Proteins containing ar 25.3 2.6E+02 0.0057 34.6 8.5 101 15-115 422-532 (678)
226 PF12830 Nipped-B_C: Sister ch 25.3 7.7E+02 0.017 25.5 14.9 137 312-471 7-143 (187)
227 PF07705 CARDB: CARDB; InterP 25.0 2.2E+02 0.0047 25.3 6.3 55 757-835 18-72 (101)
228 PHA03159 hypothetical protein; 25.0 77 0.0017 31.1 3.3 39 1-41 1-39 (160)
229 KOG2753 Uncharacterized conser 24.9 1E+03 0.023 27.4 12.5 144 203-347 60-220 (378)
230 PF00927 Transglut_C: Transglu 24.8 62 0.0013 30.1 2.7 62 759-837 16-79 (107)
231 KOG2062 26S proteasome regulat 24.7 66 0.0014 40.1 3.5 54 22-79 565-618 (929)
232 KOG2141 Protein involved in hi 24.7 1.1E+03 0.023 30.0 13.3 178 296-504 320-509 (822)
233 PF08713 DNA_alkylation: DNA a 23.5 94 0.002 32.2 4.1 40 9-49 152-191 (213)
234 cd05700 S1_Rrp5_repeat_hs9 S1_ 23.5 65 0.0014 27.7 2.2 17 819-835 40-57 (65)
235 PF14225 MOR2-PAG1_C: Cell mor 23.2 4.7E+02 0.01 28.8 9.5 79 300-391 137-218 (262)
236 KOG0943 Predicted ubiquitin-pr 23.0 1.2E+02 0.0025 39.9 5.1 13 496-508 1524-1536(3015)
237 COG5218 YCG1 Chromosome conden 22.8 9E+02 0.019 30.0 12.0 28 443-470 241-268 (885)
238 PF12397 U3snoRNP10: U3 small 22.8 3.8E+02 0.0082 25.4 7.8 85 8-93 2-91 (121)
239 cd08050 TAF6 TATA Binding Prot 21.7 2.8E+02 0.0061 31.7 7.7 75 6-80 256-341 (343)
240 PF09624 DUF2393: Protein of u 21.5 3.1E+02 0.0067 27.1 7.2 76 757-845 61-144 (149)
241 cd06561 AlkD_like A new struct 21.5 1.8E+02 0.0039 29.6 5.7 37 10-47 139-175 (197)
242 PF01347 Vitellogenin_N: Lipop 21.4 60 0.0013 39.6 2.4 74 3-81 516-591 (618)
243 PF09759 Atx10homo_assoc: Spin 21.4 1.8E+02 0.0039 27.6 5.0 62 329-397 2-66 (102)
244 PF04147 Nop14: Nop14-like fam 21.3 76 0.0016 40.7 3.3 26 755-780 563-588 (840)
245 PF04118 Dopey_N: Dopey, N-ter 20.9 1.2E+03 0.027 26.3 12.5 98 344-450 22-127 (307)
246 KOG3723 PH domain protein Melt 20.8 1.6E+03 0.036 27.7 14.0 68 239-306 151-226 (851)
247 PF10193 Telomere_reg-2: Telom 20.7 6.4E+02 0.014 24.1 8.8 43 454-507 68-110 (114)
248 PF00514 Arm: Armadillo/beta-c 20.6 1.8E+02 0.0038 22.1 4.1 27 315-341 14-40 (41)
249 KOG1820 Microtubule-associated 20.4 8.4E+02 0.018 31.5 12.0 103 243-345 294-403 (815)
250 COG5110 RPN1 26S proteasome re 20.4 1.7E+03 0.036 27.6 15.6 113 1-116 439-557 (881)
251 PF01603 B56: Protein phosphat 20.3 9E+02 0.02 28.3 11.7 123 384-510 241-370 (409)
252 KOG2137 Protein kinase [Signal 20.3 9.9E+02 0.022 30.1 12.1 135 209-345 275-421 (700)
253 KOG2959 Transcriptional regula 20.3 1.9E+02 0.004 30.5 5.2 6 602-607 40-45 (238)
254 KOG4500 Rho/Rac GTPase guanine 20.2 2.9E+02 0.0062 32.8 7.2 71 313-389 315-389 (604)
255 KOG2038 CAATT-binding transcri 20.2 1.3E+03 0.028 29.6 12.9 143 335-509 215-370 (988)
256 PRK10941 hypothetical protein; 20.1 2.3E+02 0.005 31.4 6.4 33 477-510 199-231 (269)
No 1
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.1e-164 Score=1394.27 Aligned_cols=760 Identities=36% Similarity=0.554 Sum_probs=620.3
Q ss_pred CCCccchhhhHHHHHHHHhhcCCCCchhhHHHHHHHHHHhccCCcchhHHHHHHHHHHhcCCChhHHHHHHHHHHHhCCC
Q 002667 1 MAGIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPN 80 (895)
Q Consensus 1 MssIRv~~I~piv~~aIkk~l~D~SPYVRK~AA~AI~Kly~ld~pd~~~~L~eil~~LL~D~~p~VvgsAv~Af~EIcP~ 80 (895)
|||||||+|+||||+|||+|++|++|||||+|||||+|||+++ |+++++|+++|++||+|++|.|+|+|++||.||||+
T Consensus 132 lSsIRvp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd-~e~k~qL~e~I~~LLaD~splVvgsAv~AF~evCPe 210 (968)
T KOG1060|consen 132 LSSIRVPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLD-PEQKDQLEEVIKKLLADRSPLVVGSAVMAFEEVCPE 210 (968)
T ss_pred HHhcchhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCC-hhhHHHHHHHHHHHhcCCCCcchhHHHHHHHHhchh
Confidence 7999999999999999999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred CccchHHHHHHHHHhCCCCChhhHHHHHHHHHhhhhhcccccchhhhhhhhhcccCCCcccccccccccccCCCCCCccc
Q 002667 81 NFTLIGRNYRNLCQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRTYD 160 (895)
Q Consensus 81 r~dLihk~yrkLc~~L~d~dEWgQv~iL~lL~rY~r~~~~~~~ps~~f~~~~~~~~~~~e~~~~~~~~l~~q~~~~~~~~ 160 (895)
|++||||||||||++|+|+|||||+++|+||+|||| ++|++|+.|-.. +++.+. +
T Consensus 211 rldLIHknyrklC~ll~dvdeWgQvvlI~mL~RYAR--~~l~~P~~~~~~------------------~e~n~~-----~ 265 (968)
T KOG1060|consen 211 RLDLIHKNYRKLCRLLPDVDEWGQVVLINMLTRYAR--HQLPDPTVVDSS------------------LEDNGR-----S 265 (968)
T ss_pred HHHHhhHHHHHHHhhccchhhhhHHHHHHHHHHHHH--hcCCCccccccc------------------cccCcc-----c
Confidence 999999999999999999999999999999999985 689988643221 111110 0
Q ss_pred hhhhhhhhhhcccccccccccCCCcccccccccCccccCCCCChhHHHHHHhhhhhccCCChHHHHHHHHHHHhcCCHHH
Q 002667 161 SELVNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSPKED 240 (895)
Q Consensus 161 ~~~~~~~~~~~~~~~d~~~~~s~~~~~~~~~~~~~~~~~~~~d~D~~lLL~~~~pLLqS~NsAVVlaaa~l~~~lap~~~ 240 (895)
.+ .++.+ + ....++.+|+||++||++++|||||+|++||||||++|||++|+.+
T Consensus 266 ~~-----------~~~~~--------------~-~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~~ 319 (968)
T KOG1060|consen 266 CN-----------LKDKY--------------N-EIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKNQ 319 (968)
T ss_pred cc-----------ccccc--------------c-ccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHHH
Confidence 00 00000 0 0113467999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhCCcccccccccceeccCCcHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Q 002667 241 VKRIVKPLLFILRSSGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKLEILSSIVTESSISSVFKEFQD 320 (895)
Q Consensus 241 l~~~~~pLv~LL~s~~eiqyvvL~~I~~i~~~~p~lF~~~l~~Ffi~~sDp~~IK~lKLeIL~~Lane~Nv~~IL~EL~~ 320 (895)
+..+++||+|||++++++||++|++|++|+.++|.+|.||++.||+|.+||+.||.+||+||++|+|+.|+..||+||++
T Consensus 320 ~~~i~kaLvrLLrs~~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~~ILrE~q~ 399 (968)
T KOG1060|consen 320 VTKIAKALVRLLRSNREVQYVVLQNIATISIKRPTLFEPHLKSFFVRSSDPTQVKILKLEILSNLANESNISEILRELQT 399 (968)
T ss_pred HHHHHHHHHHHHhcCCcchhhhHHHHHHHHhcchhhhhhhhhceEeecCCHHHHHHHHHHHHHHHhhhccHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCChhHHHHHHHHHHHHHhhCcchHHHHHHHHHHHHHhhhccccccCCCCCCchhhhHHHHHHHHHhhCCcchHHHH
Q 002667 321 YIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQDPSCHEKVI 400 (895)
Q Consensus 321 Yv~~~D~ef~~~aI~AIG~~A~~~p~~a~~cl~~Ll~LLs~~~~~~~~~~~~~~~~vv~E~V~vik~Llq~~P~~~~~ii 400 (895)
|+++.|.+|+..||+|||+||.++-.++++||+||+.||++ .++.||.|+|++||.|||++|..|.++|
T Consensus 400 YI~s~d~~faa~aV~AiGrCA~~~~sv~~tCL~gLv~Llss-----------hde~Vv~eaV~vIk~Llq~~p~~h~~ii 468 (968)
T KOG1060|consen 400 YIKSSDRSFAAAAVKAIGRCASRIGSVTDTCLNGLVQLLSS-----------HDELVVAEAVVVIKRLLQKDPAEHLEIL 468 (968)
T ss_pred HHhcCchhHHHHHHHHHHHHHHhhCchhhHHHHHHHHHHhc-----------ccchhHHHHHHHHHHHHhhChHHHHHHH
Confidence 99999999999999999999999999999999999999984 3667999999999999999999999999
Q ss_pred HHHHHhhhccCchhhHHhhhhhhccccCCCCCccchHHHHHHHHHHhhccCcHHHHHHHHHHHHHHhhhcCCCChHHHHH
Q 002667 401 IQLFRSLDSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTITR 480 (895)
Q Consensus 401 ~~L~~~ld~i~~p~ArAsIiWLLGEY~~~~e~ip~ia~dvLr~l~k~F~~E~~~VKlqILtaaaKL~~~~p~e~~~~l~~ 480 (895)
.+|++.+++|..|.|||+|+||+||||. .+|.++|||||+++|+|.+|..+||+|||+++||||+.++. .+++
T Consensus 469 ~~La~lldti~vp~ARA~IiWLige~~e---~vpri~PDVLR~laksFs~E~~evKlQILnL~aKLyl~~~~----~~kl 541 (968)
T KOG1060|consen 469 FQLARLLDTILVPAARAGIIWLIGEYCE---IVPRIAPDVLRKLAKSFSDEGDEVKLQILNLSAKLYLTNID----QTKL 541 (968)
T ss_pred HHHHHHhhhhhhhhhhceeeeeehhhhh---hcchhchHHHHHHHHhhccccchhhHHHHHhhhhheEechh----hHHH
Confidence 9999999999999999999999999995 58999999999999999999999999999999999999876 5789
Q ss_pred HHHHHHHHHccCCChHHHhHHHHHHHHccCCCCCCCccchhhhhccCcchHHHHHhhhccCCCCCC-CCCCCccCcCCCc
Q 002667 481 LFSYLLELAECDLNYDVRDRARFFKKLFSHNLCSQVPEETNALQENKDLPLVLVECIFRKQENLAA-SEPINDRFYLPGS 559 (895)
Q Consensus 481 L~qyvL~la~~D~n~DVRDRAr~y~~LL~~~~~~~~~~~~~~~~~~~~~~~~la~~lf~~~~p~~~-~~~~~~r~~~lGS 559 (895)
++||+++|++||.+||+|||||||++|+.+.. .+ .++++.+|.+.+|++. ++.++.|+|++||
T Consensus 542 l~~Yv~~L~~yD~sYDiRDRaRF~r~l~~~~~---------------~L-s~h~~ei~l~~Kpa~~~es~f~~~~~~~gs 605 (968)
T KOG1060|consen 542 LVQYVFELARYDLSYDIRDRARFLRQLISPLE---------------AL-SKHAREIFLASKPAPVLESSFKDRHYQLGS 605 (968)
T ss_pred HHHHHHHHhccCCCcchhHHHHHHHHHhccHH---------------HH-HHHHHHHhhccCCCccCcccccCCCcccch
Confidence 99999999999999999999999999998731 22 3788888877766665 8889999999999
Q ss_pred HHHHhhccCCCCccCCCCCCCCCccccccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 002667 560 LSQIVLHAAPGYEPLPKPCSSLCDDLGQFSNSIDRTTALGEEWTGSSSNGTDDPDTSGSLDEESGSNYDSQQSIPGLSDN 639 (895)
Q Consensus 560 LS~~~~~~~~gY~~Lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (895)
+||+++++++||+|||+|+.+.++..+ .+ .+++.|++++|++++.+++++++++++++++++.+.++
T Consensus 606 lS~lLn~~a~GY~~lp~~~~~~~d~~~------~~---~~a~~~~~~~e~~e~~~~~~~s~~~ses~~~~~~~~e~---- 672 (968)
T KOG1060|consen 606 LSLLLNAPAPGYEPLPNWPAVAPDPFP------DS---ERAKLLDSDSEEEETGDDESWSDPESESGESSNFSREG---- 672 (968)
T ss_pred HHHHhcCcCcCCccCCCccccCCCCCc------ch---hhcccccCCccccccccccCCCCCccccccCCcccccc----
Confidence 999999999999999999999887201 11 23566888888765433333333333332222211111
Q ss_pred CCCCCCCCCCCCCCCc-ccccccccccccCCCCCCCCCC----CCcccccchhhhccccCCCCCCCCC-------Cchhh
Q 002667 640 SGTGDSASEGDRNCDP-LIQISDAGIACSNENGASHSGF----PDLEGMMSKRALESWLDEQPGSSSP-------SASEQ 707 (895)
Q Consensus 640 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ld~~~~~~~~-------~~~~~ 707 (895)
+++..++++++++++ .-+.+.++.+.++.+++++..+ +.+.+..+.++....+++..+.+.. .+.++
T Consensus 673 -ge~~dsn~~~~~~~d~sdqss~~~ss~~d~~s~se~e~e~~~e~~k~~pet~~~sl~l~d~~~~n~~P~~~~~~~~~l~ 751 (968)
T KOG1060|consen 673 -GEENDSNEEKDSEDDFSDQSSYEESSAEDSESSSEAESEPTPEKLKEKPETKDVSLDLNDFTPQNGKPVLPERNDPDLA 751 (968)
T ss_pred -cccccccccccccccccccchhccccccccccccccccccCCCccCCCcccccccccccccCCCCCCCCCCCCCChhhh
Confidence 111111111111110 0000111111011111111101 0001111112222355665443331 12222
Q ss_pred hh---hhccccceeeccccc-cccCcccccccccCCCCeeEEEEecCCCCCCCCCeEEEEEEEEeCCCCceeeeEeeccc
Q 002667 708 IQ---VRQSSARISIGNIGR-QVKAKSYTLLDPANGNGLKVYYSFSSEASTISPQLVCLETFFENCSSETMSEVTLVDEE 783 (895)
Q Consensus 708 ~~---~~~~~~~~~~~~~~~-~~~~~~~~LL~~~~g~GL~v~Y~f~r~p~~~~~~mv~v~l~f~N~s~~~~~~i~~~~~~ 783 (895)
.. +.....+.+.....+ .++.|++||||++.|+||.++|+|+|+| + |+++++|+|.++.++.+||+
T Consensus 752 ~d~~~~~~~~s~~~~~~~~p~~i~~~~~ell~~~~g~gl~~~y~f~r~~----~--~~i~~~~~n~~~~~~~~~~l---- 821 (968)
T KOG1060|consen 752 ADDEFFSLTGSRNSKPLKIPTHIEEKSIELLNEVEGSGLDLEYSFSRLP----D--VSISLHFTNKSDLELLGIHL---- 821 (968)
T ss_pred ccccccccccccccccccCCccCcchhHhhhhhcccCCcceeeeccCCC----C--eeEEEecccCCCccccccee----
Confidence 11 222222222222222 5788999999999999999999999999 2 99999999999999999999
Q ss_pred ccchhhhhhhhhhhccccccCCCCCCCcccCCcccccCCCCeeEEEEEEecCCCCccceEEEEEcCCeeeeEeecCcccc
Q 002667 784 SHKALDLADLTLATTASSLTSQSDLPTLVPMEEITSLEPGQTMKRILEVRFHHHLLPLKLALHCNGKKLPVKLRPDIGYF 863 (895)
Q Consensus 784 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~i~~l~p~~~~~~~~~i~f~~~~~~~~~~l~~~~~~~~v~~~p~vgel 863 (895)
++|.||. |++|.+|++|+||+++++.|||||||+||++.|+||+.+| .|+++|||||+
T Consensus 822 --~~p~gm~------------------i~ef~~i~s~~pg~~~~~~~~i~F~dst~~~~~~l~~~~g--~~~~~~pvge~ 879 (968)
T KOG1060|consen 822 --KLPAGMS------------------IKEFSPIESLPPGASASVVLGIDFCDSTQAAEWQLLTDDG--RVRFQPPVGEL 879 (968)
T ss_pred --ecccccc------------------ccccccccccCCCcceeeeeeeeccccccceeEEEEeccC--cEEecCchhhh
Confidence 3699994 9999999999999999999999999999999999999999 99999999999
Q ss_pred cccccCCHHHHHHHhhcCCCccccccccE
Q 002667 864 IKPVPMDMETFIEMESRLPGMFEYARRWS 892 (895)
Q Consensus 864 ~~p~~m~~~~f~~~~~~l~GM~e~~~~~~ 892 (895)
++||.|++++|+||||+|+|||||...+.
T Consensus 880 ~~~v~~~~~~~~~E~~~L~gln~~~~~l~ 908 (968)
T KOG1060|consen 880 VQPVRMSEEDFKKERGKLGGLNEHVIQLE 908 (968)
T ss_pred hccccCCHHHHHhhhhhhcccchhheeee
Confidence 99999999999999999999999987664
No 2
>PTZ00429 beta-adaptin; Provisional
Probab=100.00 E-value=2.7e-80 Score=740.17 Aligned_cols=446 Identities=25% Similarity=0.359 Sum_probs=387.4
Q ss_pred CCCccchhhhHHHHHHHHhhcCCCCchhhHHHHHHHHHHhccCCcch--hHHHHHHHHHHhcCCChhHHHHHHHHHHHhC
Q 002667 1 MAGIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEI--TSAIEEIVGILLNDRSPGVVGAAAAAFASIC 78 (895)
Q Consensus 1 MssIRv~~I~piv~~aIkk~l~D~SPYVRK~AA~AI~Kly~ld~pd~--~~~L~eil~~LL~D~~p~VvgsAv~Af~EIc 78 (895)
||+||+++|+++++.+|++|+.|++|||||+||+|+.|+|+++ |+. ...+.+.|..||.|+||+|++||+.+|.+|+
T Consensus 129 Ls~Ir~~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~-pelv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~ 207 (746)
T PTZ00429 129 MMCIRVSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDD-MQLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVN 207 (746)
T ss_pred HHcCCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhC-cccccccchHHHHHHHhcCCCccHHHHHHHHHHHHH
Confidence 7999999999999999999999999999999999999999999 884 3457788888999999999999999999997
Q ss_pred ---CCCccchHHHHHHHHHhCCCCChhhHHHHHHHHHhhhhhcccccchhhhhhhhhcccCCCcccccccccccccCCCC
Q 002667 79 ---PNNFTLIGRNYRNLCQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIP 155 (895)
Q Consensus 79 ---P~r~dLihk~yrkLc~~L~d~dEWgQv~iL~lL~rY~r~~~~~~~ps~~f~~~~~~~~~~~e~~~~~~~~l~~q~~~ 155 (895)
|++++++|+++++||+.|.+++||+|+.||++|.+|.+..
T Consensus 208 ~~~~~~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~------------------------------------- 250 (746)
T PTZ00429 208 DYGSEKIESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSD------------------------------------- 250 (746)
T ss_pred HhCchhhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCC-------------------------------------
Confidence 6678999999999999999999999999999999986421
Q ss_pred CCccchhhhhhhhhhcccccccccccCCCcccccccccCccccCCCCChhHHHHHHhhhhhccCCChHHHHHHHHHHHhc
Q 002667 156 SRTYDSELVNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIM 235 (895)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~d~~~~~s~~~~~~~~~~~~~~~~~~~~d~D~~lLL~~~~pLLqS~NsAVVlaaa~l~~~l 235 (895)
+.+...+|+.+.|+|||+|+||||+|+++++++
T Consensus 251 -----------------------------------------------~~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l 283 (746)
T PTZ00429 251 -----------------------------------------------KESAETLLTRVLPRMSHQNPAVVMGAIKVVANL 283 (746)
T ss_pred -----------------------------------------------cHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Confidence 123467899999999999999999999999998
Q ss_pred CC---HH----HHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhCCcccccccccceeccCCcHHHHHHHHHHHHhhcCC
Q 002667 236 SP---KE----DVKRIVKPLLFILRSSGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKLEILSSIVTE 308 (895)
Q Consensus 236 ap---~~----~l~~~~~pLv~LL~s~~eiqyvvL~~I~~i~~~~p~lF~~~l~~Ffi~~sDp~~IK~lKLeIL~~Lane 308 (895)
.+ ++ .+.++..||++|+++++|+||++|++|..|+..+|.+|.+|++.|||+++||.|||.+||+||+.|||+
T Consensus 284 ~~~~~~~~~~~~~~rl~~pLv~L~ss~~eiqyvaLr~I~~i~~~~P~lf~~~~~~Ff~~~~Dp~yIK~~KLeIL~~Lane 363 (746)
T PTZ00429 284 ASRCSQELIERCTVRVNTALLTLSRRDAETQYIVCKNIHALLVIFPNLLRTNLDSFYVRYSDPPFVKLEKLRLLLKLVTP 363 (746)
T ss_pred cCcCCHHHHHHHHHHHHHHHHHhhCCCccHHHHHHHHHHHHHHHCHHHHHHHHHhhhcccCCcHHHHHHHHHHHHHHcCc
Confidence 75 22 345677899999988999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhhccCChhHHHHHHHHHHHHHhhCcchHHHHHHHHHHHHHhhhccccccCCCCCCchhhhHHHHHHHH
Q 002667 309 SSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSI 388 (895)
Q Consensus 309 ~Nv~~IL~EL~~Yv~~~D~ef~~~aI~AIG~~A~~~p~~a~~cl~~Ll~LLs~~~~~~~~~~~~~~~~vv~E~V~vik~L 388 (895)
+|+..|++||++|+++.|.+|++++|+|||+||.++|..++||+++|++|++. +.+ ++.|+|+++++|
T Consensus 364 ~Nv~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~~~a~~cV~~Ll~ll~~-----------~~~-~v~e~i~vik~I 431 (746)
T PTZ00429 364 SVAPEILKELAEYASGVDMVFVVEVVRAIASLAIKVDSVAPDCANLLLQIVDR-----------RPE-LLPQVVTAAKDI 431 (746)
T ss_pred ccHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHhcC-----------Cch-hHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999973 223 577999999999
Q ss_pred HhhCCcchHHHHHHHHHhh--hccCchhhHHhhhhhhccccCCCCCccchHHHHHHHHHHhhccCcHHHHHHHHHHHHHH
Q 002667 389 IKQDPSCHEKVIIQLFRSL--DSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKV 466 (895)
Q Consensus 389 lq~~P~~~~~ii~~L~~~l--d~i~~p~ArAsIiWLLGEY~~~~e~ip~ia~dvLr~l~k~F~~E~~~VKlqILtaaaKL 466 (895)
+|+||+.+ ++..|++.+ +.+.+|+||++++|||||||+. ++. ++++|+.++++|..|+.+||+|+||+++|+
T Consensus 432 lrkyP~~~--il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~---I~~-a~~~L~~~i~~f~~E~~~VqlqlLta~vKl 505 (746)
T PTZ00429 432 VRKYPELL--MLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDF---IEN-GKDIIQRFIDTIMEHEQRVQLAILSAAVKM 505 (746)
T ss_pred HHHCccHH--HHHHHHHhhcccccccHHHHHHHHHHHHhhHhh---Hhh-HHHHHHHHHhhhccCCHHHHHHHHHHHHHH
Confidence 99999874 678888866 7899999999999999999964 454 789999999999999999999999999999
Q ss_pred hhhcCCCChHHHHHHHHHHHHH-HccCCChHHHhHHHHHHHHccCCCCCCCccchhhhhccCcchHHHHHh-hhccCCCC
Q 002667 467 LLCAKGGDMWTITRLFSYLLEL-AECDLNYDVRDRARFFKKLFSHNLCSQVPEETNALQENKDLPLVLVEC-IFRKQENL 544 (895)
Q Consensus 467 ~~~~p~e~~~~l~~L~qyvL~l-a~~D~n~DVRDRAr~y~~LL~~~~~~~~~~~~~~~~~~~~~~~~la~~-lf~~~~p~ 544 (895)
|+++|++. ..+++++|+. +++|.||||||||+|||+||+.+.. ...|+. ++.++||.
T Consensus 506 fl~~p~~~----~~~l~~vL~~~t~~~~d~DVRDRA~~Y~rLLs~~~~-----------------~~~a~~iv~~~~~~i 564 (746)
T PTZ00429 506 FLRDPQGM----EPQLNRVLETVTTHSDDPDVRDRAFAYWRLLSKGIT-----------------VAQMKKVVHGQMVPV 564 (746)
T ss_pred HhcCcHHH----HHHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCc-----------------HHHHHHHHcCCCCCC
Confidence 99999754 3456667754 4678899999999999999986431 123444 45556655
Q ss_pred CCCCCCCcc------CcCCCcHHHHhhccCCC
Q 002667 545 AASEPINDR------FYLPGSLSQIVLHAAPG 570 (895)
Q Consensus 545 ~~~~~~~~r------~~~lGSLS~~~~~~~~g 570 (895)
+..+.+.+. ...+||||.+++++..-
T Consensus 565 ~~~~~~~d~~~l~~L~~~~~tlssvY~kp~~~ 596 (746)
T PTZ00429 565 NVDSTFSDAMTMADLKKSLNTAAIVFARPYQS 596 (746)
T ss_pred CcccccCCHHHHHHHHHhcCceeeeecCCHHH
Confidence 443323221 23578888888776544
No 3
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.5e-69 Score=623.25 Aligned_cols=444 Identities=29% Similarity=0.456 Sum_probs=395.3
Q ss_pred CCCccchhhhHHHHHHHHhhcCCCCchhhHHHHHHHHHHhccCCcc--hhHHHHHHHHHHhcCCChhHHHHHHHHHHHhC
Q 002667 1 MAGIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEE--ITSAIEEIVGILLNDRSPGVVGAAAAAFASIC 78 (895)
Q Consensus 1 MssIRv~~I~piv~~aIkk~l~D~SPYVRK~AA~AI~Kly~ld~pd--~~~~L~eil~~LL~D~~p~VvgsAv~Af~EIc 78 (895)
|++|||+.|+.+++.++++|++|.+|||||+||.++.|+|+++ ++ ....+.+.|..|+.|.+|+|++||+.|+.||.
T Consensus 110 m~~l~v~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~-~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~ 188 (734)
T KOG1061|consen 110 MGCLRVDKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDID-PDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIH 188 (734)
T ss_pred eeeEeehHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCC-hhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 7899999999999999999999999999999999999999999 88 55669999999999999999999999999996
Q ss_pred ---CC--CccchHHHHHHHHHhCCCCChhhHHHHHHHHHhhhhhcccccchhhhhhhhhcccCCCcccccccccccccCC
Q 002667 79 ---PN--NFTLIGRNYRNLCQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNG 153 (895)
Q Consensus 79 ---P~--r~dLihk~yrkLc~~L~d~dEWgQv~iL~lL~rY~r~~~~~~~ps~~f~~~~~~~~~~~e~~~~~~~~l~~q~ 153 (895)
|+ -..++|...++|++.|.+|+||||+.||+.|++|.+..
T Consensus 189 e~~~~~~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d----------------------------------- 233 (734)
T KOG1061|consen 189 ESHPSVNLLELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKD----------------------------------- 233 (734)
T ss_pred HhCCCCCcccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCC-----------------------------------
Confidence 42 35788999999999999999999999999999997521
Q ss_pred CCCCccchhhhhhhhhhcccccccccccCCCcccccccccCccccCCCCChhHHHHHHhhhhhccCCChHHHHHHHHHHH
Q 002667 154 IPSRTYDSELVNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHW 233 (895)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~s~~~~~~~~~~~~~~~~~~~~d~D~~lLL~~~~pLLqS~NsAVVlaaa~l~~ 233 (895)
+.|+.-+++.+.|.|||.|+|||+++.++++
T Consensus 234 -------------------------------------------------~~ea~~i~~r~~p~Lqh~n~avvlsavKv~l 264 (734)
T KOG1061|consen 234 -------------------------------------------------SREAEDICERLTPRLQHANSAVVLSAVKVIL 264 (734)
T ss_pred -------------------------------------------------chhHHHHHHHhhhhhccCCcceEeehHHHHH
Confidence 0134568899999999999999999999998
Q ss_pred hcCCH------HHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhCCcccccccccceeccCCcHHHHHHHHHHHHhhcC
Q 002667 234 IMSPK------EDVKRIVKPLLFILRSSGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKLEILSSIVT 307 (895)
Q Consensus 234 ~lap~------~~l~~~~~pLv~LL~s~~eiqyvvL~~I~~i~~~~p~lF~~~l~~Ffi~~sDp~~IK~lKLeIL~~Lan 307 (895)
++.+. ..++++..||+.||.+.++++|++|+||..+.+++|++|..+++.|||+|+||.|||..|||||+.||+
T Consensus 265 ~~~~~~~~~~~~~~~K~~~pl~tlls~~~e~qyvaLrNi~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~ 344 (734)
T KOG1061|consen 265 QLVKYLKQVNELLFKKVAPPLVTLLSSESEIQYVALRNINLILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIELAN 344 (734)
T ss_pred HHHHHHHHHHHHHHHHhcccceeeecccchhhHHHHhhHHHHHHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhh
Confidence 87642 347889999999999988999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHhhccCChhHHHHHHHHHHHHHhhCcchHHHHHHHHHHHHHhhhccccccCCCCCCchhhhHHHHHHH
Q 002667 308 ESSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKS 387 (895)
Q Consensus 308 e~Nv~~IL~EL~~Yv~~~D~ef~~~aI~AIG~~A~~~p~~a~~cl~~Ll~LLs~~~~~~~~~~~~~~~~vv~E~V~vik~ 387 (895)
.+|+.+|+.||..|+.+.|.+|++++|+|||+||.+++++ ..|++.|++|+.. +-+++|.|++++|++
T Consensus 345 ~~nl~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~-~~cv~~lLell~~-----------~~~yvvqE~~vvi~d 412 (734)
T KOG1061|consen 345 DANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS-NDCVSILLELLET-----------KVDYVVQEAIVVIRD 412 (734)
T ss_pred HhHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh-hhhHHHHHHHHhh-----------cccceeeehhHHHHh
Confidence 9999999999999999999999999999999999999999 9999999999984 345789999999999
Q ss_pred HHhhCCcchHHHHHHHHHhhhccCchhhHHhhhhhhccccCCCCCccchHHHHHHHHHHhhccCcHHHHHHHHHHHHHHh
Q 002667 388 IIKQDPSCHEKVIIQLFRSLDSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVL 467 (895)
Q Consensus 388 Llq~~P~~~~~ii~~L~~~ld~i~~p~ArAsIiWLLGEY~~~~e~ip~ia~dvLr~l~k~F~~E~~~VKlqILtaaaKL~ 467 (895)
|+|+||..++.++..++..++++++|+||++++||+|||++ .+|+ ++.+||.+.++|.+|+.+||+++||+++|+|
T Consensus 413 ilRkyP~~~~~vv~~l~~~~~sl~epeak~amiWilg~y~~---~i~~-a~elL~~f~en~~dE~~~Vql~LLta~ik~F 488 (734)
T KOG1061|consen 413 ILRKYPNKYESVVAILCENLDSLQEPEAKAALIWILGEYAE---RIEN-ALELLESFLENFKDETAEVQLELLTAAIKLF 488 (734)
T ss_pred hhhcCCCchhhhhhhhcccccccCChHHHHHHHHHHhhhhh---ccCc-HHHHHHHHHhhcccchHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999995 4666 6899999999999999999999999999999
Q ss_pred hhcCCCChHHHHHHHHHHHHHHccCC-ChHHHhHHHHHHHHccCCCCCCCccchhhhhccCcchHHHHHhhhccCCCCCC
Q 002667 468 LCAKGGDMWTITRLFSYLLELAECDL-NYDVRDRARFFKKLFSHNLCSQVPEETNALQENKDLPLVLVECIFRKQENLAA 546 (895)
Q Consensus 468 ~~~p~e~~~~l~~L~qyvL~la~~D~-n~DVRDRAr~y~~LL~~~~~~~~~~~~~~~~~~~~~~~~la~~lf~~~~p~~~ 546 (895)
+++|.+. .++++.+|.+|..|. |+|+|||+.+|||+|+.++ ..|+.+..+++|...
T Consensus 489 l~~p~~t----q~~l~~vL~~~~~d~~~~dlrDr~l~Y~RlLs~~~-------------------~~a~~v~~~~kP~is 545 (734)
T KOG1061|consen 489 LKKPTET----QELLQGVLPLATADTDNPDLRDRGLIYWRLLSEDP-------------------LIAKDVVLAEKPLIS 545 (734)
T ss_pred hcCCccH----HHHHHHHHhhhhccccChhhhhhHHHHHHHhhcCH-------------------HHHHHHHhcCCCccc
Confidence 9999854 567888888899885 7999999999999998532 456666544444444
Q ss_pred CCC--CCc----c-CcCCCcHHHHhhccC
Q 002667 547 SEP--IND----R-FYLPGSLSQIVLHAA 568 (895)
Q Consensus 547 ~~~--~~~----r-~~~lGSLS~~~~~~~ 568 (895)
..+ ... + .-.+||||.++.++-
T Consensus 546 ~~~~~~~p~~le~l~~~i~tlssVY~Kp~ 574 (734)
T KOG1061|consen 546 EETDSLDPTLLEELLCDIGTLSSVYHKPP 574 (734)
T ss_pred cCCCCCCchHHHHHHHhhccccceeecCh
Confidence 211 111 2 345899999987654
No 4
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=100.00 E-value=2.5e-56 Score=520.97 Aligned_cols=413 Identities=29% Similarity=0.443 Sum_probs=366.9
Q ss_pred CCCccchhhhHHHHHHHHhhcCCCCchhhHHHHHHHHHHhccCCcchhHH-HHHHHHHHhcCCChhHHHHHHHHHHHh-C
Q 002667 1 MAGIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSA-IEEIVGILLNDRSPGVVGAAAAAFASI-C 78 (895)
Q Consensus 1 MssIRv~~I~piv~~aIkk~l~D~SPYVRK~AA~AI~Kly~ld~pd~~~~-L~eil~~LL~D~~p~VvgsAv~Af~EI-c 78 (895)
||+|+.++++|.++..|.+++.|++|||||+||+|+.|+|+.+ |+..+. +++.+..||.|++|.|+++|+.++.++ +
T Consensus 103 l~~i~~~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~-p~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i~~ 181 (526)
T PF01602_consen 103 LSNIRTPEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKD-PDLVEDELIPKLKQLLSDKDPSVVSAALSLLSEIKC 181 (526)
T ss_dssp HHHH-SHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHC-HCCHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHHHC
T ss_pred hhhhcccchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccC-HHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHcc
Confidence 4789999999999999999999999999999999999999999 996555 899999999999999999999999999 8
Q ss_pred CCCc--cchHHHHHHHHHhCCCCChhhHHHHHHHHHhhhhhcccccchhhhhhhhhcccCCCcccccccccccccCCCCC
Q 002667 79 PNNF--TLIGRNYRNLCQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPS 156 (895)
Q Consensus 79 P~r~--dLihk~yrkLc~~L~d~dEWgQv~iL~lL~rY~r~~~~~~~ps~~f~~~~~~~~~~~e~~~~~~~~l~~q~~~~ 156 (895)
+++. .++|+.+++||+.+...+||+|+.+|++|.+|++... .
T Consensus 182 ~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~-----~------------------------------- 225 (526)
T PF01602_consen 182 NDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEP-----E------------------------------- 225 (526)
T ss_dssp THHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSH-----H-------------------------------
T ss_pred CcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCCh-----h-------------------------------
Confidence 8876 8999999999999999999999999999999986310 0
Q ss_pred CccchhhhhhhhhhcccccccccccCCCcccccccccCccccCCCCChhHHHHHHhhhhhccCCChHHHHHHHHHHHhcC
Q 002667 157 RTYDSELVNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMS 236 (895)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~d~~~~~s~~~~~~~~~~~~~~~~~~~~d~D~~lLL~~~~pLLqS~NsAVVlaaa~l~~~la 236 (895)
+++...+++.+.++|++.|++|+++|+++++++.
T Consensus 226 ----------------------------------------------~~~~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~ 259 (526)
T PF01602_consen 226 ----------------------------------------------DADKNRIIEPLLNLLQSSSPSVVYEAIRLIIKLS 259 (526)
T ss_dssp ----------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred ----------------------------------------------hhhHHHHHHHHHHHhhccccHHHHHHHHHHHHhh
Confidence 0011467888999999999999999999999998
Q ss_pred CHHH-HHHHHHHHHHHhcC-CCcchHHHHHHHHHHHHhC-CcccccccccceeccCCcHHHHHHHHHHHHhhcCCCCHHH
Q 002667 237 PKED-VKRIVKPLLFILRS-SGASKYVVLCNIQVFAKAL-PHLFVPHYEDFFVSSSDSYQSKALKLEILSSIVTESSISS 313 (895)
Q Consensus 237 p~~~-l~~~~~pLv~LL~s-~~eiqyvvL~~I~~i~~~~-p~lF~~~l~~Ffi~~sDp~~IK~lKLeIL~~Lane~Nv~~ 313 (895)
+... +..++.+|++||.+ ++|+||++|+.|..|+..+ +.++.+++..|+++++|+.+||++||++|+.|+|++|+..
T Consensus 260 ~~~~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~v~~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~~n~~~ 339 (526)
T PF01602_consen 260 PSPELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNPPAVFNQSLILFFLLYDDDPSIRKKALDLLYKLANESNVKE 339 (526)
T ss_dssp SSHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHHHGTHHHHHHHHHCSSSHHHHHHHHHHHHHH--HHHHHH
T ss_pred cchHHHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccchhhhhhhhhhheecCCCChhHHHHHHHHHhhcccccchhh
Confidence 8654 78999999999986 5789999999999999998 6778778888999989999999999999999999999999
Q ss_pred HHHHHHHhhccC-ChhHHHHHHHHHHHHHhhCcchHHHHHHHHHHHHHhhhccccccCCCCCCchhhhHHHHHHHHHhhC
Q 002667 314 VFKEFQDYIRDP-DRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQD 392 (895)
Q Consensus 314 IL~EL~~Yv~~~-D~ef~~~aI~AIG~~A~~~p~~a~~cl~~Ll~LLs~~~~~~~~~~~~~~~~vv~E~V~vik~Llq~~ 392 (895)
|++||..|+++. |.++++++|++|+.||.+++....||++.+++++.. ++..+..+++.+++++++++
T Consensus 340 Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~~~~v~~l~~ll~~-----------~~~~~~~~~~~~i~~ll~~~ 408 (526)
T PF01602_consen 340 ILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPDAEWYVDTLLKLLEI-----------SGDYVSNEIINVIRDLLSNN 408 (526)
T ss_dssp HHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSSHHHHHHHHHHHHHC-----------TGGGCHCHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhccchhhhhhHHHHHHHHHhccCchHHHHHHHHHHhhhh-----------ccccccchHHHHHHHHhhcC
Confidence 999999999655 888999999999999999999999999999999984 23457888889999999999
Q ss_pred CcchHHHHHHHHHhhhccCchhhHHhhhhhhccccCCCCCccchHHHHHHHHHHhhccCcHHHHHHHHHHHHHHhhhcCC
Q 002667 393 PSCHEKVIIQLFRSLDSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKG 472 (895)
Q Consensus 393 P~~~~~ii~~L~~~ld~i~~p~ArAsIiWLLGEY~~~~e~ip~ia~dvLr~l~k~F~~E~~~VKlqILtaaaKL~~~~p~ 472 (895)
|+.+..++.+|++.++++.++.++++++|++|||++..+... .++++++.++++|..|+..||+++||+++|++.+.|.
T Consensus 409 ~~~~~~~l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~~~~-~~~~~~~~l~~~~~~~~~~vk~~ilt~~~Kl~~~~~~ 487 (526)
T PF01602_consen 409 PELREKILKKLIELLEDISSPEALAAAIWILGEYGELIENTE-SAPDILRSLIENFIEESPEVKLQILTALAKLFKRNPE 487 (526)
T ss_dssp TTTHHHHHHHHHHHHTSSSSHHHHHHHHHHHHHHCHHHTTTT-HHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHSCS
T ss_pred hhhhHHHHHHHHHHHHHhhHHHHHHHHHhhhcccCCcccccc-cHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhCCc
Confidence 999999999999999999999999999999999997543312 6899999999999999999999999999999999986
Q ss_pred CChHHHHHHHHHHHHHHcc-CCChHHHhHHHHHHHHccC
Q 002667 473 GDMWTITRLFSYLLELAEC-DLNYDVRDRARFFKKLFSH 510 (895)
Q Consensus 473 e~~~~l~~L~qyvL~la~~-D~n~DVRDRAr~y~~LL~~ 510 (895)
.. ....++++++.++++ |.|+||||||+||++||..
T Consensus 488 ~~--~~~~i~~~~~~~~~~~s~~~evr~Ra~~y~~ll~~ 524 (526)
T PF01602_consen 488 NE--VQNEILQFLLSLATEDSSDPEVRDRAREYLRLLNS 524 (526)
T ss_dssp TT--HHHHHHHHHHCHHHHS-SSHHHHHHHHHHHHHHHH
T ss_pred hh--hHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHcc
Confidence 43 234788888888886 4599999999999999964
No 5
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=100.00 E-value=4e-45 Score=429.99 Aligned_cols=408 Identities=24% Similarity=0.354 Sum_probs=336.3
Q ss_pred CCCccchhhhHHHHHHHHhhcCCCCchhhHHHHHHHHHHhccCCcc-hhHH-HHHHHHHHhcCCChhHHHHHHHHHHHhC
Q 002667 1 MAGIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEE-ITSA-IEEIVGILLNDRSPGVVGAAAAAFASIC 78 (895)
Q Consensus 1 MssIRv~~I~piv~~aIkk~l~D~SPYVRK~AA~AI~Kly~ld~pd-~~~~-L~eil~~LL~D~~p~VvgsAv~Af~EIc 78 (895)
||.||+++++++++.+|++|++|++|||||+||+||.|+|++| ++ -.+. +++++..|+.|.||.|+++|+.+|.+|+
T Consensus 116 ls~l~~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld-~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~ 194 (757)
T COG5096 116 LSLLRVKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLD-KDLYHELGLIDILKELVADSDPIVIANALASLAEID 194 (757)
T ss_pred HHhcChHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcC-HhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhc
Confidence 6899999999999999999999999999999999999999999 77 3333 7888888999999999999999999999
Q ss_pred CCCccchHHHHHHHHHhCCCCC--------hhhHHHHHHHHHhhhhhcccccchhhhhhhhhcccCCCcccccccccccc
Q 002667 79 PNNFTLIGRNYRNLCQILPDVE--------EWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALE 150 (895)
Q Consensus 79 P~r~dLihk~yrkLc~~L~d~d--------EWgQv~iL~lL~rY~r~~~~~~~ps~~f~~~~~~~~~~~e~~~~~~~~l~ 150 (895)
|+ +.|+.++..|..+..++ ||.+..+++.|+.|.++.
T Consensus 195 ~e---~a~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~le~L~~~~~~~-------------------------------- 239 (757)
T COG5096 195 PE---LAHGYSLEVILRIPQLDLLSLSVSTEWLLLIILEVLTERVPTT-------------------------------- 239 (757)
T ss_pred hh---hhhhHHHHHHHHhhhccchhhhhhHHHHHHHHHHHHHccCCCC--------------------------------
Confidence 99 78888899999888876 777777777777775421
Q ss_pred cCCCCCCccchhhhhhhhhhcccccccccccCCCcccccccccCccccCCCCChhHHHHHHhhhhhccCCChHHHHHHHH
Q 002667 151 DNGIPSRTYDSELVNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAG 230 (895)
Q Consensus 151 ~q~~~~~~~~~~~~~~~~~~~~~~~d~~~~~s~~~~~~~~~~~~~~~~~~~~d~D~~lLL~~~~pLLqS~NsAVVlaaa~ 230 (895)
.| ++..+...+.|.+|+.|++|++.+++
T Consensus 240 ---------------------------------------------------~~-s~~~~~~~~~~~~~~~n~~vl~~av~ 267 (757)
T COG5096 240 ---------------------------------------------------PD-SAEDFEERLSPPLQHNNAEVLLIAVK 267 (757)
T ss_pred ---------------------------------------------------CC-cHHHHHHhccchhhhCcHHHHHHHHH
Confidence 01 23456778889999999999999999
Q ss_pred HHHhcCCH----HHHHHHHHHHHHHhcCC-CcchHHHHHHHHHHHHhCCcccccccccceeccCCcHHHHHHHHHHHHhh
Q 002667 231 VHWIMSPK----EDVKRIVKPLLFILRSS-GASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKLEILSSI 305 (895)
Q Consensus 231 l~~~lap~----~~l~~~~~pLv~LL~s~-~eiqyvvL~~I~~i~~~~p~lF~~~l~~Ffi~~sDp~~IK~lKLeIL~~L 305 (895)
..+.+.+. ........+|+.|+..+ ..++||.+.++..+...+|.+|.--.+.||+++.||.|++..|+++++.+
T Consensus 268 ~i~~l~~~~~~~~~~~~~~~~l~~Ll~~~~~~~~~vl~~~~~~~l~~~~k~~~~~~~~f~~~~~~~i~~~lek~~~~t~l 347 (757)
T COG5096 268 VILRLLVFLPSNNLFLISSPPLVTLLAKPESLIQYVLRRNIQIDLEVCSKLLDKVKKLFLIEYNDDIYIKLEKLDQLTRL 347 (757)
T ss_pred HHHHHhhhhccccHHHhhccHHHHHHcCCHHHHHHHHHHhhHHHHHhhHHHHHHHhhhhhhhccchHHHHHHHHHHHhhc
Confidence 98877653 34556667888888776 78999999999999999999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHhhcc--CChhHHHHHHHHHHHHHhhCcchHHHHHHHHHHHHHhhhccccccCCCCCCchhhhH--
Q 002667 306 VTESSISSVFKEFQDYIRD--PDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADVLIQS-- 381 (895)
Q Consensus 306 ane~Nv~~IL~EL~~Yv~~--~D~ef~~~aI~AIG~~A~~~p~~a~~cl~~Ll~LLs~~~~~~~~~~~~~~~~vv~E~-- 381 (895)
++..|..+++-|+.+|+.+ .|.+++.++|++||.+|.+.+.....|+..++.++. + .+. +..+++.|+
T Consensus 348 ~~~~n~~~~L~e~~~y~~~~~~~~e~v~~~ik~lgd~~sk~~s~~~~~I~~~lel~~------g-~~~-~~~Yi~~e~~~ 419 (757)
T COG5096 348 ADDQNLSQILLELIYYIAENHIDAEMVSEAIKALGDLASKAESSVNDCISELLELLE------G-VWI-RGSYIVQEVRI 419 (757)
T ss_pred CCchhhHHHHHHHHHHHhhccccHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhcc------c-hhh-ccchhhhhhcc
Confidence 9999999999999999998 899999999999999999999999999999999987 1 111 123555554
Q ss_pred ---HHHHH---HHHhhCCcc-hHHHHHHHHHhhhccC----chhhHHhh-----hhhhccccCCCCCccchHHHHHHHHH
Q 002667 382 ---IISIK---SIIKQDPSC-HEKVIIQLFRSLDSIK----VPEARVMI-----IWMVGEYSSVGVKIPRMLTTVLKYLA 445 (895)
Q Consensus 382 ---V~vik---~Llq~~P~~-~~~ii~~L~~~ld~i~----~p~ArAsI-----iWLLGEY~~~~e~ip~ia~dvLr~l~ 445 (895)
|.+++ .+|+.+|.. ....+..+++..+.++ .|.+|.+. +||+|||++. +|...|++||.+.
T Consensus 420 ~~~i~v~r~~~~~lr~l~~~~~~~~~~~l~~~~e~l~~~~~~P~~k~~~~~~~~~wl~ge~~~~---i~r~~~~~l~~~~ 496 (757)
T COG5096 420 VDCISVIRISVLVLRILPNEYPKILLRGLYALEETLELQSREPRAKSVTDKYLGAWLLGEFSDI---IPRLEPELLRIAI 496 (757)
T ss_pred cceeeeeehhcchhhhcCCcchhhhHHHHHHHHHHhhccccCcHHHHHHhhhhHHHhHHHHHHH---HhhhhHHHHHHHH
Confidence 44454 566666665 3333444444444444 79988888 9999999964 6778899999999
Q ss_pred HhhccCcHHHHHHHHHHHHHHhhhcCCCChH----HHHHHHHHHHHHHccCCChHHHhHHHHHHHHccC
Q 002667 446 WCFKSEAVETKLQILNTTIKVLLCAKGGDMW----TITRLFSYLLELAECDLNYDVRDRARFFKKLFSH 510 (895)
Q Consensus 446 k~F~~E~~~VKlqILtaaaKL~~~~p~e~~~----~l~~L~qyvL~la~~D~n~DVRDRAr~y~~LL~~ 510 (895)
.+|..|+.+||.+||++.+|+++..+....+ ....+.+++++ +-.++|+||||+||++++..
T Consensus 497 ~~~~~E~levq~~Il~~svkl~~~~~~~~~~~~~~~d~~v~~~~~~---~v~~~DlRDra~my~~~lst 562 (757)
T COG5096 497 SNFVDETLEVQYTILMSSVKLIANSIRKAKQCNSELDQDVLRRCFD---YVLVPDLRDRARMYSRLLST 562 (757)
T ss_pred HHhcccchHHHHHHHHHHHHHHHhCcHhhhhccchhccHHHHHHHh---ccCChhHHHHHHHHHHHhcC
Confidence 9999999999999999999999998753221 11133333333 34578999999999999984
No 6
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.6e-37 Score=356.66 Aligned_cols=454 Identities=17% Similarity=0.211 Sum_probs=342.3
Q ss_pred CCccchhhhHHHHHHHHhhcCCCCchhhHHHHHHHHHHhccCCcchhHHHHHHHHHHhcCCChhHHHHHHHHHHHhCCCC
Q 002667 2 AGIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNN 81 (895)
Q Consensus 2 ssIRv~~I~piv~~aIkk~l~D~SPYVRK~AA~AI~Kly~ld~pd~~~~L~eil~~LL~D~~p~VvgsAv~Af~EIcP~r 81 (895)
|.|--+++++-+.+-|.+.+.+++|||||.|++|..|+++.. |+..+.++.--.++|+|++++|+++++..+.|+|-..
T Consensus 132 g~i~s~EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~-P~l~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~ 210 (866)
T KOG1062|consen 132 GNICSPEMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKV-PDLVEHFVIAFRKLLCEKHHGVLIAGLHLITELCKIS 210 (866)
T ss_pred hccCCHHHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcC-chHHHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcC
Confidence 556679999999999999999999999999999999999999 9988888888889999999999999999999999664
Q ss_pred ccc---hHHHHHHHHHhCCC---------------CChhhHHHHHHHHHhhhhhcccccchhhhhhhhhcccCCCccccc
Q 002667 82 FTL---IGRNYRNLCQILPD---------------VEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVF 143 (895)
Q Consensus 82 ~dL---ihk~yrkLc~~L~d---------------~dEWgQv~iL~lL~rY~r~~~~~~~ps~~f~~~~~~~~~~~e~~~ 143 (895)
-+. ..+..+.|+.+|.+ .|||-||.||++|.-|.+.. .+..
T Consensus 211 ~~~l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d---------------------~daS 269 (866)
T KOG1062|consen 211 PDALSYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQND---------------------ADAS 269 (866)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCC---------------------ccHH
Confidence 332 23333444444443 59999999999999998531 0111
Q ss_pred ccccccccCCCCCCccchhhhhhhhhhcccccccccccCCCcccccccccCccccCCCCChhHHHHHHhhhhhccCCChH
Q 002667 144 DVNVALEDNGIPSRTYDSELVNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSA 223 (895)
Q Consensus 144 ~~~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~d~~~~~s~~~~~~~~~~~~~~~~~~~~d~D~~lLL~~~~pLLqS~NsA 223 (895)
+...++.+|.. +.+.. =.+.+.|
T Consensus 270 d~M~DiLaqva--------------------------------------------------------tntds-skN~GnA 292 (866)
T KOG1062|consen 270 DLMNDILAQVA--------------------------------------------------------TNTDS-SKNAGNA 292 (866)
T ss_pred HHHHHHHHHHH--------------------------------------------------------hcccc-cccchhH
Confidence 11222222211 11111 0234569
Q ss_pred HHHHHHHHHHhcCCHHHHH-HHHHHHHHHh-cCCCcchHHHHHHHHHHHHhCCcccccccccceeccCCc-HHHHHHHHH
Q 002667 224 VVLAAAGVHWIMSPKEDVK-RIVKPLLFIL-RSSGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDS-YQSKALKLE 300 (895)
Q Consensus 224 VVlaaa~l~~~lap~~~l~-~~~~pLv~LL-~s~~eiqyvvL~~I~~i~~~~p~lF~~~l~~Ffi~~sDp-~~IK~lKLe 300 (895)
+.++|+++++.+.+...+. .+++.|-++| ++++|+|||+|+.+...++..|...+.|-....-|..|| ..||++.||
T Consensus 293 ILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralE 372 (866)
T KOG1062|consen 293 ILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALE 372 (866)
T ss_pred HHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 9999999999998876654 4677887665 568999999999999999999999999988777677776 689999999
Q ss_pred HHHhhcCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHHHhhCcchHHHHHHHHHHHHHhhhccccccCCCCCCchhhh
Q 002667 301 ILSSIVTESSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADVLIQ 380 (895)
Q Consensus 301 IL~~Lane~Nv~~IL~EL~~Yv~~~D~ef~~~aI~AIG~~A~~~p~~a~~cl~~Ll~LLs~~~~~~~~~~~~~~~~vv~E 380 (895)
+++.|+|++||..+++||..|+...|.+|+...+..|..+|.+|.+...|.++++++.++. .| ..|-.+
T Consensus 373 Ls~~lvn~~Nv~~mv~eLl~fL~~~d~~~k~~~as~I~~laEkfaP~k~W~idtml~Vl~~----------aG-~~V~~d 441 (866)
T KOG1062|consen 373 LSYALVNESNVRVMVKELLEFLESSDEDFKADIASKIAELAEKFAPDKRWHIDTMLKVLKT----------AG-DFVNDD 441 (866)
T ss_pred HHHHHhccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHh----------cc-cccchh
Confidence 9999999999999999999999999999999999999999999999999999999999984 12 222233
Q ss_pred HHHHHHHHHhhC-CcchHHHHHHHHHhhhc-----cCchhhHHhhhhhhccccCCCCC----------ccchHHHHHHHH
Q 002667 381 SIISIKSIIKQD-PSCHEKVIIQLFRSLDS-----IKVPEARVMIIWMVGEYSSVGVK----------IPRMLTTVLKYL 444 (895)
Q Consensus 381 ~V~vik~Llq~~-P~~~~~ii~~L~~~ld~-----i~~p~ArAsIiWLLGEY~~~~e~----------ip~ia~dvLr~l 444 (895)
.+..+-.||-.- ++.|+..+.+|...+.. +..+.....++|.|||||++.-. .+.-+-|++..+
T Consensus 442 v~~nll~LIa~~~~e~~~y~~~rLy~a~~~~~~~~is~e~l~qVa~W~IGEYGdlll~~~~~~~p~~vtesdivd~l~~v 521 (866)
T KOG1062|consen 442 VVNNLLRLIANAFQELHEYAVLRLYLALSEDTLLDISQEPLLQVASWCIGEYGDLLLDGANEEEPIKVTESDIVDKLEKV 521 (866)
T ss_pred hHHHHHHHHhcCCcchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhhhhhHHhhcCccccCCCcCCHHHHHHHHHHH
Confidence 444566667666 88899999999876643 55555566779999999964210 112234455555
Q ss_pred HHhhccCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHccCCChHHHhHHHHHHHHccCCCCCCCccchhhhh
Q 002667 445 AWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTITRLFSYLLELAECDLNYDVRDRARFFKKLFSHNLCSQVPEETNALQ 524 (895)
Q Consensus 445 ~k~F~~E~~~VKlqILtaaaKL~~~~p~e~~~~l~~L~qyvL~la~~D~n~DVRDRAr~y~~LL~~~~~~~~~~~~~~~~ 524 (895)
..++.. +..+|.++|+|++||..+.+.. .++++++. .-.+-..|.|+|+||.+|..|+...
T Consensus 522 ~~~~~s-~~~tk~yal~Al~KLSsr~~s~-~~ri~~lI----~~~~~s~~~elQQRa~E~~~l~~~~------------- 582 (866)
T KOG1062|consen 522 LMSHSS-DSTTKGYALTALLKLSSRFHSS-SERIKQLI----SSYKSSLDTELQQRAVEYNALFAKD------------- 582 (866)
T ss_pred HHhccc-hHHHHHHHHHHHHHHHhhcccc-HHHHHHHH----HHhcccccHHHHHHHHHHHHHHHHH-------------
Confidence 555544 4899999999999999998763 33444443 3345677999999999999999652
Q ss_pred ccCcchHHHHHhhhccCCCCCCCCCCCccCcCCCcHHHHhhccCCCCcc
Q 002667 525 ENKDLPLVLVECIFRKQENLAASEPINDRFYLPGSLSQIVLHAAPGYEP 573 (895)
Q Consensus 525 ~~~~~~~~la~~lf~~~~p~~~~~~~~~r~~~lGSLS~~~~~~~~gY~~ 573 (895)
..+.+.|+..+|.... .+...+. =|.....+...+.+|.+
T Consensus 583 ------~~lr~siLe~mp~~e~-~~~~~~~--~g~~~~~i~~~~~p~~~ 622 (866)
T KOG1062|consen 583 ------KHLRKSILERMPSCED-ITVDARL--DGNGPAAIEQGAEPYKS 622 (866)
T ss_pred ------HHHHHHhcccCccccc-ccccccc--ccchHHHHHhccCCCcc
Confidence 1455567766654432 1222222 37888888777777665
No 7
>PF14796 AP3B1_C: Clathrin-adaptor complex-3 beta-1 subunit C-terminal
Probab=100.00 E-value=6.8e-36 Score=290.92 Aligned_cols=94 Identities=33% Similarity=0.505 Sum_probs=91.3
Q ss_pred cccCcccccccccCCCCeeEEEEecCCCCCCCCCeEEEEEEEEeCCCCceeeeEeecccccchhhhhhhhhhhccccccC
Q 002667 725 QVKAKSYTLLDPANGNGLKVYYSFSSEASTISPQLVCLETFFENCSSETMSEVTLVDEESHKALDLADLTLATTASSLTS 804 (895)
Q Consensus 725 ~~~~~~~~LL~~~~g~GL~v~Y~f~r~p~~~~~~mv~v~l~f~N~s~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 804 (895)
++++|+||||||++|+||+|+|||+||||+||++||||||+|+|+|+++|+||||++| ++++||+
T Consensus 52 ~v~~k~~eLL~~v~G~GL~v~Y~F~RqP~~~s~~mvsIql~ftN~s~~~i~~I~i~~k---~l~~g~~------------ 116 (145)
T PF14796_consen 52 FVPPKKYELLNRVNGKGLSVEYRFSRQPSLYSPSMVSIQLTFTNNSDEPIKNIHIGEK---KLPAGMR------------ 116 (145)
T ss_pred ccCcceEEeeeccCCCceeEEEEEccCCcCCCCCcEEEEEEEEecCCCeecceEECCC---CCCCCcE------------
Confidence 6899999999999999999999999999999999999999999999999999999999 5799984
Q ss_pred CCCCCCcccCCcccccCCCCeeEEEEEEecCCCCc
Q 002667 805 QSDLPTLVPMEEITSLEPGQTMKRILEVRFHHHLL 839 (895)
Q Consensus 805 ~~~~~~~~~f~~i~~l~p~~~~~~~~~i~f~~~~~ 839 (895)
|++|++|++|+||++++++|||||||+||
T Consensus 117 ------i~~F~~I~~L~pg~s~t~~lgIDF~DStQ 145 (145)
T PF14796_consen 117 ------IHEFPEIESLEPGASVTVSLGIDFNDSTQ 145 (145)
T ss_pred ------eeccCcccccCCCCeEEEEEEEecccCCC
Confidence 99999999999999999999999999998
No 8
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.1e-33 Score=321.40 Aligned_cols=428 Identities=18% Similarity=0.227 Sum_probs=325.4
Q ss_pred hhhhHHHHHHHHhhc--CCCCchhhHHHHHHHHHHhccCCcc--hhHHHHHHHHHHhcCCChhHHHHHHHHHHHhC---C
Q 002667 7 HVISPLVLVAVGKCA--RDPSVFVRKCAANALPKLHELRQEE--ITSAIEEIVGILLNDRSPGVVGAAAAAFASIC---P 79 (895)
Q Consensus 7 ~~I~piv~~aIkk~l--~D~SPYVRK~AA~AI~Kly~ld~pd--~~~~L~eil~~LL~D~~p~VvgsAv~Af~EIc---P 79 (895)
.++.+-+-.-|.|.+ .+..+||||.||+|+.++|+-. || ..+.+.+.+-.||+|++-.|+.||...+.-+| |
T Consensus 141 re~~ea~~~DI~KlLvS~~~~~~vkqkaALclL~L~r~s-pDl~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p 219 (938)
T KOG1077|consen 141 REMAEAFADDIPKLLVSGSSMDYVKQKAALCLLRLFRKS-PDLVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNP 219 (938)
T ss_pred HhHHHHhhhhhHHHHhCCcchHHHHHHHHHHHHHHHhcC-ccccChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCC
Confidence 445555555666655 4678999999999999999998 99 56578888888999999999999988777776 3
Q ss_pred CCc-cchHHHHHHHHHhCCC-------------CChhhHHHHHHHHHhhhhhcccccchhhhhhhhhcccCCCccccccc
Q 002667 80 NNF-TLIGRNYRNLCQILPD-------------VEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDV 145 (895)
Q Consensus 80 ~r~-dLihk~yrkLc~~L~d-------------~dEWgQv~iL~lL~rY~r~~~~~~~ps~~f~~~~~~~~~~~e~~~~~ 145 (895)
+.+ .-+.+++-+|.++... -.+|-|+.++++|..|-+.+ ||+ .
T Consensus 220 ~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~----D~~------------------~- 276 (938)
T KOG1077|consen 220 ESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPE----DPS------------------T- 276 (938)
T ss_pred HHHhhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCC----Cch------------------H-
Confidence 332 2244455555555322 37999999999999994321 000 0
Q ss_pred ccccccCCCCCCccchhhhhhhhhhcccccccccccCCCcccccccccCccccCCCCChhHHHHHHhhh-----hhccCC
Q 002667 146 NVALEDNGIPSRTYDSELVNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTS-----PLLWSH 220 (895)
Q Consensus 146 ~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~d~~~~~s~~~~~~~~~~~~~~~~~~~~d~D~~lLL~~~~-----pLLqS~ 220 (895)
-.. +..-+..+|+... .--|++
T Consensus 277 --------------r~~---------------------------------------l~evl~~iLnk~~~~~~~k~vq~~ 303 (938)
T KOG1077|consen 277 --------------RAR---------------------------------------LNEVLERILNKAQEPPKSKKVQHS 303 (938)
T ss_pred --------------HHH---------------------------------------HHHHHHHHHhccccCccccchHhh
Confidence 000 0000111111111 012455
Q ss_pred C--hHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHHhCC--cccccccccceec-cCC-cH
Q 002667 221 N--SAVVLAAAGVHWIMSP-KEDVKRIVKPLLFILRS-SGASKYVVLCNIQVFAKALP--HLFVPHYEDFFVS-SSD-SY 292 (895)
Q Consensus 221 N--sAVVlaaa~l~~~lap-~~~l~~~~~pLv~LL~s-~~eiqyvvL~~I~~i~~~~p--~lF~~~l~~Ffi~-~sD-p~ 292 (895)
| .||.++++++.+|+.+ ++.+.++++.|..+|.. .+|+||++|.++..|+...+ +....|....+-. .++ +.
T Consensus 304 na~naVLFeaI~l~~h~D~e~~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h~d~Ii~sLkterDv 383 (938)
T KOG1077|consen 304 NAKNAVLFEAISLAIHLDSEPELLSRAVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKHQDTIINSLKTERDV 383 (938)
T ss_pred hhHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHHHHHHHHHhccccch
Confidence 6 4999999999999987 56789999999999975 79999999999999987655 3455665544432 224 36
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHHHhhCcchHHHHHHHHHHHHHhhhccccccCCC
Q 002667 293 QSKALKLEILSSIVTESSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGN 372 (895)
Q Consensus 293 ~IK~lKLeIL~~Lane~Nv~~IL~EL~~Yv~~~D~ef~~~aI~AIG~~A~~~p~~a~~cl~~Ll~LLs~~~~~~~~~~~~ 372 (895)
.||++.+|+||.+|+.+|++.|+.||..|+...|..++.+.+-.++.+|.+|.....|++++.++||+. +|+. +
T Consensus 384 SirrravDLLY~mcD~~Nak~IV~elLqYL~tAd~sireeivlKvAILaEKyAtDy~WyVdviLqLiri---agd~---v 457 (938)
T KOG1077|consen 384 SIRRRAVDLLYAMCDVSNAKQIVAELLQYLETADYSIREEIVLKVAILAEKYATDYSWYVDVILQLIRI---AGDY---V 457 (938)
T ss_pred HHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHH---hccc---c
Confidence 799999999999999999999999999999999999999999999999999999999999999999985 2221 1
Q ss_pred CCCchhhhHHHHHHHHHhhCCcchHHHHHHHHHhhhc--cCchhhHHhhhhhhccccCCCCCccch-HHHHHHHHHHhhc
Q 002667 373 GEADVLIQSIISIKSIIKQDPSCHEKVIIQLFRSLDS--IKVPEARVMIIWMVGEYSSVGVKIPRM-LTTVLKYLAWCFK 449 (895)
Q Consensus 373 ~~~~vv~E~V~vik~Llq~~P~~~~~ii~~L~~~ld~--i~~p~ArAsIiWLLGEY~~~~e~ip~i-a~dvLr~l~k~F~ 449 (895)
++ -||. ++.+|+.++++.|..+++++.+++.. +.+.+.|++ .+|+||||+++..-|.+ +...|..+..+|.
T Consensus 458 sd--eVW~---RvvQiVvNnedlq~yaak~~fe~Lq~~a~hE~mVKvg-gyiLGEfg~LIa~~prss~~~qFsllh~K~~ 531 (938)
T KOG1077|consen 458 SD--EVWY---RVVQIVVNNEDLQGYAAKRLFEYLQKPACHENMVKVG-GYILGEFGNLIADDPRSSPAVQFSLLHEKLH 531 (938)
T ss_pred cH--HHHH---HhheeEecchhhhHHHHHHHHHHHhhhHHHHHHHHhh-hhhhhhhhhhhcCCCCCChHHHHHHHHHHhc
Confidence 22 2565 56788999999999999999999976 456677777 89999999987654544 3456889999999
Q ss_pred cCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHccCCChHHHhHHHHHHHHccCCCCCCCccchhhhhccCcc
Q 002667 450 SEAVETKLQILNTTIKVLLCAKGGDMWTITRLFSYLLELAECDLNYDVRDRARFFKKLFSHNLCSQVPEETNALQENKDL 529 (895)
Q Consensus 450 ~E~~~VKlqILtaaaKL~~~~p~e~~~~l~~L~qyvL~la~~D~n~DVRDRAr~y~~LL~~~~~~~~~~~~~~~~~~~~~ 529 (895)
..+..+|..+|++.+|++-..|+ ++.-.+.+|++...-.|+|+|+||.+|.+|..... -|
T Consensus 532 ~~s~~tr~lLLtTyiKl~nl~PE-----i~~~v~~vFq~~~n~~D~ElQqRa~EYLql~k~as--------------~d- 591 (938)
T KOG1077|consen 532 LCSPVTRALLLTTYIKLINLFPE-----IKSNVQKVFQLYSNLIDVELQQRAVEYLQLSKLAS--------------TD- 591 (938)
T ss_pred cCChhHHHHHHHHHHHHHhhChh-----hhHHHHHHHHhhcccCCHHHHHHHHHHHHHHHhcc--------------ch-
Confidence 99999999999999999999885 33445555655445579999999999999997642 12
Q ss_pred hHHHHHhhhccCCCCCC
Q 002667 530 PLVLVECIFRKQENLAA 546 (895)
Q Consensus 530 ~~~la~~lf~~~~p~~~ 546 (895)
.| ..+|.++|||+.
T Consensus 592 --vL-~~vleeMPpF~e 605 (938)
T KOG1077|consen 592 --VL-QTVLEEMPPFPE 605 (938)
T ss_pred --HH-HHHHhhCCCCcc
Confidence 23 467899999987
No 9
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.3e-28 Score=282.10 Aligned_cols=324 Identities=18% Similarity=0.315 Sum_probs=273.8
Q ss_pred CCCccchhhhHHHHHHHHhhcCCCCchhhHHHHHHHHHHhccC-C--cchhHHHHHHHHHHhcCCChhHHHHHHHHHHHh
Q 002667 1 MAGIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELR-Q--EEITSAIEEIVGILLNDRSPGVVGAAAAAFASI 77 (895)
Q Consensus 1 MssIRv~~I~piv~~aIkk~l~D~SPYVRK~AA~AI~Kly~ld-~--pd~~~~L~eil~~LL~D~~p~VvgsAv~Af~EI 77 (895)
+|.+|-|++++.+|++|+.|+.++++||||.|.+||..+|+.. + ||- +.|++- .|+.+.||.+..+|++.+..+
T Consensus 123 LckLkE~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~~~L~pDa-peLi~~--fL~~e~DpsCkRNAFi~L~~~ 199 (948)
T KOG1058|consen 123 LCKLKEPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFEHLIPDA-PELIES--FLLTEQDPSCKRNAFLMLFTT 199 (948)
T ss_pred hhhcCcHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhhhhhcCCh-HHHHHH--HHHhccCchhHHHHHHHHHhc
Confidence 4789999999999999999999999999999999999999873 1 443 233322 366899999999999999999
Q ss_pred CCCCccchHHHHHHHHHhCCCCChhh---HHHHHHHHHhhhhhcccccchhhhhhhhhcccCCCcccccccccccccCCC
Q 002667 78 CPNNFTLIGRNYRNLCQILPDVEEWG---QILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGI 154 (895)
Q Consensus 78 cP~r~dLihk~yrkLc~~L~d~dEWg---Qv~iL~lL~rY~r~~~~~~~ps~~f~~~~~~~~~~~e~~~~~~~~l~~q~~ 154 (895)
.|+| +..+|...+.++..|| |.+|++++..-|.++ |.
T Consensus 200 D~Er------Al~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~-----p~----------------------------- 239 (948)
T KOG1058|consen 200 DPER------ALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLAN-----PA----------------------------- 239 (948)
T ss_pred CHHH------HHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcC-----HH-----------------------------
Confidence 9997 6678888887777666 999999988766321 00
Q ss_pred CCCccchhhhhhhhhhcccccccccccCCCcccccccccCccccCCCCChhHHHHHHhhhhhccCCChHHHHHHHHHHHh
Q 002667 155 PSRTYDSELVNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWI 234 (895)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~d~~~~~s~~~~~~~~~~~~~~~~~~~~d~D~~lLL~~~~pLLqS~NsAVVlaaa~l~~~ 234 (895)
.-..+++++..+|+|.++||+++||.....
T Consensus 240 --------------------------------------------------~~~~~i~~i~~lL~stssaV~fEaa~tlv~ 269 (948)
T KOG1058|consen 240 --------------------------------------------------EKARYIRCIYNLLSSTSSAVIFEAAGTLVT 269 (948)
T ss_pred --------------------------------------------------HhhHHHHHHHHHHhcCCchhhhhhcceEEE
Confidence 013678999999999999999999999888
Q ss_pred cCC-HHHHHHHHHHHHHHhc--CCCcchHHHHHHHHHHHHhCCcccccccccce-eccCCcHHHHHHHHHHHHhhcCCCC
Q 002667 235 MSP-KEDVKRIVKPLLFILR--SSGASKYVVLCNIQVFAKALPHLFVPHYEDFF-VSSSDSYQSKALKLEILSSIVTESS 310 (895)
Q Consensus 235 lap-~~~l~~~~~pLv~LL~--s~~eiqyvvL~~I~~i~~~~p~lF~~~l~~Ff-i~~sDp~~IK~lKLeIL~~Lane~N 310 (895)
+++ +..++.++..+++|+- +++|++.++|+.|..+...+.++|+.+...|. +...-...++++.|+|...|++..|
T Consensus 270 lS~~p~alk~Aa~~~i~l~~kesdnnvklIvldrl~~l~~~~~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrN 349 (948)
T KOG1058|consen 270 LSNDPTALKAAASTYIDLLVKESDNNVKLIVLDRLSELKALHEKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRN 349 (948)
T ss_pred ccCCHHHHHHHHHHHHHHHHhccCcchhhhhHHHHHHHhhhhHHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhcc
Confidence 876 6789999999999985 57999999999999999888899999988776 3344446899999999999999999
Q ss_pred HHHHHHHHHHhhcc-------CChhHHHHHHHHHHHHHhhCcchHHHHHHHHHHHHHhhhccccccCCCCCCchhhhHHH
Q 002667 311 ISSVFKEFQDYIRD-------PDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADVLIQSII 383 (895)
Q Consensus 311 v~~IL~EL~~Yv~~-------~D~ef~~~aI~AIG~~A~~~p~~a~~cl~~Ll~LLs~~~~~~~~~~~~~~~~vv~E~V~ 383 (895)
+.+|+.-|+.-+.. .+..+++..|++|..||.+||+++..++..|+++|+. .++......+.
T Consensus 350 vediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~~aatvV~~ll~fisD-----------~N~~aas~vl~ 418 (948)
T KOG1058|consen 350 VEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPEVAATVVSLLLDFISD-----------SNEAAASDVLM 418 (948)
T ss_pred HHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHhcc-----------CCHHHHHHHHH
Confidence 99999987764421 1236999999999999999999999999999999973 23334455667
Q ss_pred HHHHHHhhCCcchHHHHHHHHHhhhccCchhhHHhhhhhhccccC
Q 002667 384 SIKSIIKQDPSCHEKVIIQLFRSLDSIKVPEARVMIIWMVGEYSS 428 (895)
Q Consensus 384 vik~Llq~~P~~~~~ii~~L~~~ld~i~~p~ArAsIiWLLGEY~~ 428 (895)
.+|..++++|+....+|.+|...+..|..+.+-.+.+|++||||.
T Consensus 419 FvrE~iek~p~Lr~~ii~~l~~~~~~irS~ki~rgalwi~GeYce 463 (948)
T KOG1058|consen 419 FVREAIEKFPNLRASIIEKLLETFPQIRSSKICRGALWILGEYCE 463 (948)
T ss_pred HHHHHHHhCchHHHHHHHHHHHhhhhhcccccchhHHHHHHHHHh
Confidence 899999999999999999999999999999998999999999995
No 10
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=2.7e-21 Score=221.89 Aligned_cols=406 Identities=17% Similarity=0.231 Sum_probs=291.1
Q ss_pred CCCccchhhhHHHHHHHHhhcCCCCchhhHHHHHHHHHHhccCCcc-hhHHHHHHHHHHhcCCChhHHHHHHHHHHHhC-
Q 002667 1 MAGIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEE-ITSAIEEIVGILLNDRSPGVVGAAAAAFASIC- 78 (895)
Q Consensus 1 MssIRv~~I~piv~~aIkk~l~D~SPYVRK~AA~AI~Kly~ld~pd-~~~~L~eil~~LL~D~~p~VvgsAv~Af~EIc- 78 (895)
+|+|--|.+.-=+..-|-..++..-|||||.|+..+.|+|-.. || -++.+-.+.+ -|.|.||+|++|||.++.|+.
T Consensus 133 LS~fvTpdLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkY-PeAlr~~FprL~E-kLeDpDp~V~SAAV~VICELAr 210 (877)
T KOG1059|consen 133 LSCIVTPDLARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKY-PEALRPCFPRLVE-KLEDPDPSVVSAAVSVICELAR 210 (877)
T ss_pred cccccCchhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhh-hHhHhhhHHHHHH-hccCCCchHHHHHHHHHHHHHh
Confidence 3566667777778888889999999999999999999999998 88 4445554444 478999999999999999995
Q ss_pred --CCCccchHHHHHHHHHhCCCCChhhHHHHHHHHHhhhhhcccccchhhhhhhhhcccCCCcccccccccccccCCCCC
Q 002667 79 --PNNFTLIGRNYRNLCQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPS 156 (895)
Q Consensus 79 --P~r~dLihk~yrkLc~~L~d~dEWgQv~iL~lL~rY~r~~~~~~~ps~~f~~~~~~~~~~~e~~~~~~~~l~~q~~~~ 156 (895)
|.++=-+.|.|.+|+- ..-+-|--+.||.++...++-. |- |+
T Consensus 211 KnPknyL~LAP~ffkllt--tSsNNWmLIKiiKLF~aLtplE-----PR-----------------------Lg------ 254 (877)
T KOG1059|consen 211 KNPQNYLQLAPLFYKLLV--TSSNNWVLIKLLKLFAALTPLE-----PR-----------------------LG------ 254 (877)
T ss_pred hCCcccccccHHHHHHHh--ccCCCeehHHHHHHHhhccccC-----ch-----------------------hh------
Confidence 7776667788888855 5678999999999888776421 00 00
Q ss_pred CccchhhhhhhhhhcccccccccccCCCcccccccccCccccCCCCChhHHHHHHhhhhhccCCCh-HHHHHHHHHHHhc
Q 002667 157 RTYDSELVNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNS-AVVLAAAGVHWIM 235 (895)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~d~~~~~s~~~~~~~~~~~~~~~~~~~~d~D~~lLL~~~~pLLqS~Ns-AVVlaaa~l~~~l 235 (895)
.-||..+..|..|..+ +++++|+++....
T Consensus 255 --------------------------------------------------KKLieplt~li~sT~AmSLlYECvNTVVa~ 284 (877)
T KOG1059|consen 255 --------------------------------------------------KKLIEPITELMESTVAMSLLYECVNTVVAV 284 (877)
T ss_pred --------------------------------------------------hhhhhHHHHHHHhhHHHHHHHHHHHHheee
Confidence 1133334444444444 5789999987654
Q ss_pred -----CC--HHHHHHHHHHHHHHhc-CCCcchHHHHHHHHHHHHhCCcccccccccceeccCC-cHHHHHHHHHHHHhhc
Q 002667 236 -----SP--KEDVKRIVKPLLFILR-SSGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSD-SYQSKALKLEILSSIV 306 (895)
Q Consensus 236 -----ap--~~~l~~~~~pLv~LL~-s~~eiqyvvL~~I~~i~~~~p~lF~~~l~~Ffi~~sD-p~~IK~lKLeIL~~La 306 (895)
.| ...++.++.-|-.|+. +++|.+|+.|-.+.+|+..+|...+.|-....-+.+| +..||.+.||+|+-++
T Consensus 285 s~s~g~~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~kdlIlrcL~DkD~SIRlrALdLl~gmV 364 (877)
T KOG1059|consen 285 SMSSGMSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAHKDLILRCLDDKDESIRLRALDLLYGMV 364 (877)
T ss_pred hhccCCCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHhHHHHHHHhccCCchhHHHHHHHHHHHh
Confidence 12 2457777888866664 6899999999999999999999999997655534444 5789999999999999
Q ss_pred CCCCHHHHHHHHHHhhccCCh-hHHHHHH-HHHHHHHhh-Cc--chHHHHHHHHHHHHHhhhccccccCCCCCCchhhhH
Q 002667 307 TESSISSVFKEFQDYIRDPDR-RFAADTV-AAIGLCARK-LP--KMANTCVEGLLALIRQELLTSDIESGNGEADVLIQS 381 (895)
Q Consensus 307 ne~Nv~~IL~EL~~Yv~~~D~-ef~~~aI-~AIG~~A~~-~p--~~a~~cl~~Ll~LLs~~~~~~~~~~~~~~~~vv~E~ 381 (895)
++.|+..|++-|..|+-..+. .++-+.+ +-|+.|+.. |. ...+|++.+|++|.+.+. .. ....+.|
T Consensus 365 skkNl~eIVk~LM~~~~~ae~t~yrdell~~II~iCS~snY~~ItdFEWYlsVlveLa~l~~----~~----~G~~I~e- 435 (877)
T KOG1059|consen 365 SKKNLMEIVKTLMKHVEKAEGTNYRDELLTRIISICSQSNYQYITDFEWYLSVLVELARLEG----TR----HGSLIAE- 435 (877)
T ss_pred hhhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHhccc----cc----hhhHHHH-
Confidence 999999999999999977666 6777766 556777653 33 345699999999988642 11 1123444
Q ss_pred HHHHHHHHhhCCcchHHHHHHHHHhhhc------c----CchhhHHhhhhhhccccCCCCCccchHHHHHHHHHH-hhcc
Q 002667 382 IISIKSIIKQDPSCHEKVIIQLFRSLDS------I----KVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAW-CFKS 450 (895)
Q Consensus 382 V~vik~Llq~~P~~~~~ii~~L~~~ld~------i----~~p~ArAsIiWLLGEY~~~~e~ip~ia~dvLr~l~k-~F~~ 450 (895)
.|.++-.+-|..+...+..+..++++ . +-+...-+++|++|||+...+. ..++|..|.+ ++..
T Consensus 436 --Qi~Dv~iRV~~iR~fsV~~m~~Ll~~~~~~~s~q~n~~l~eVL~AaaWi~GEyse~ven----~~~~leamlrpr~~~ 509 (877)
T KOG1059|consen 436 --QIIDVAIRVPSIRPFSVSQMSALLDDPLLAGSAQINSQLCEVLYAAAWILGEYSEFVEN----PNDTLEAMLRPRSDL 509 (877)
T ss_pred --HHHHHheechhhhHhHHHHHHHHHhchhhccchhhccchhHHHHHHHHHHHHHHHHhhC----HHHHHHHHhcCcccc
Confidence 35555566677777778888877762 1 2245566679999999965432 3578887775 4446
Q ss_pred CcHHHHHHHHHHHHHHhhhc-----CCCChHHHHHHHHHHH---HHHccCCChHHHhHHHHHHHHcc
Q 002667 451 EAVETKLQILNTTIKVLLCA-----KGGDMWTITRLFSYLL---ELAECDLNYDVRDRARFFKKLFS 509 (895)
Q Consensus 451 E~~~VKlqILtaaaKL~~~~-----p~e~~~~l~~L~qyvL---~la~~D~n~DVRDRAr~y~~LL~ 509 (895)
-+..++.-.+..++|+|+.- |..+.+-+..|.+.++ +.-.+..+.+||.||.....|+.
T Consensus 510 lp~~iq~vyvqni~Klfc~~~~~~ee~~~~e~~~sL~~~i~~~l~qf~~s~d~EvQERA~~~~~li~ 576 (877)
T KOG1059|consen 510 LPGHIQAVYVQNIVKLFCSWCSQFEETKDFEGIVSLVNLILSFLEQFSGSSDLEVQERASEVLELIR 576 (877)
T ss_pred CchHHHHHHHHHHHHHHHHHHhhcCcccchhHHHHHHHHHHHHhhcccCccchhHHHHHHHHHHHHH
Confidence 78889999999999998753 2222222233333333 22235579999999655555543
No 11
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=1.2e-17 Score=194.23 Aligned_cols=408 Identities=19% Similarity=0.221 Sum_probs=301.8
Q ss_pred HHHHHHHhhcCCCCchhhHHHHHHHHHHhccCCcchhHHHHHHHHHHhcCCChhHHHHHHHHHHHhCCCC------c---
Q 002667 12 LVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNN------F--- 82 (895)
Q Consensus 12 iv~~aIkk~l~D~SPYVRK~AA~AI~Kly~ld~pd~~~~L~eil~~LL~D~~p~VvgsAv~Af~EIcP~r------~--- 82 (895)
++...+.|-++-..+.+|-.|.-++.++ +| ......+.++++..+-|+++.|-.+|+..=..+.|.. |
T Consensus 100 ivtsslmkD~t~~~d~yr~~AiR~L~~I--~d-~~m~~~iery~kqaivd~~~avSsaalvss~hll~~~~~~vkrw~ne 176 (865)
T KOG1078|consen 100 IVTSSLMKDMTGKEDLYRAAAIRALCSI--ID-GTMLQAIERYMKQAIVDKNPAVSSAALVSSYHLLPISFDVVKRWANE 176 (865)
T ss_pred hhhHHHHhhccCCCcchhHHHHHHHHhh--cC-cchhHHHHHHHHhHeeccccccchHHHHHHhhhhcccHHHHHHHHHh
Confidence 4566677778888888887777777654 45 4467778899999999999999999988766665532 2
Q ss_pred ---------cchHHHHHHHHHhCCCCChhhHHHHHHHHHhhhhhcccccchhhhhhhhhcccCCCcccccccccccccCC
Q 002667 83 ---------TLIGRNYRNLCQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNG 153 (895)
Q Consensus 83 ---------dLihk~yrkLc~~L~d~dEWgQv~iL~lL~rY~r~~~~~~~ps~~f~~~~~~~~~~~e~~~~~~~~l~~q~ 153 (895)
.+.+-|.+.|+..+++-|--.-..+++.+++-.- +. | +..+- +..
T Consensus 177 iqea~~s~~~m~QyHalglLyqirk~drla~sklv~~~~~~~~-~~----~---~A~~~----------------lir-- 230 (865)
T KOG1078|consen 177 VQEAVNSDNIMVQYHALGLLYQIRKNDRLAVSKLVQKFTRGSL-KS----P---LAVCM----------------LIR-- 230 (865)
T ss_pred hhhccCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHccccc-cc----h---hHHHH----------------HHH--
Confidence 2233566667776766666655555555554110 00 0 00000 000
Q ss_pred CCCCccchhhhhhhhhhcccccccccccCCCcccccccccCccccCCCCChhHHHHHHhhhhhccCCChHHHHHHHHHHH
Q 002667 154 IPSRTYDSELVNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHW 233 (895)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~s~~~~~~~~~~~~~~~~~~~~d~D~~lLL~~~~pLLqS~NsAVVlaaa~l~~ 233 (895)
...+.. +.+ ...+. -+.+-+..+|.|....|++++|+...
T Consensus 231 ------------~~~~~l------------~~~-------------~~~~s---~~~~fl~s~l~~K~emV~~EaArai~ 270 (865)
T KOG1078|consen 231 ------------IASELL------------KEN-------------QQADS---PLFPFLESCLRHKSEMVIYEAARAIV 270 (865)
T ss_pred ------------HHHHHh------------hhc-------------ccchh---hHHHHHHHHHhchhHHHHHHHHHHHh
Confidence 000000 000 00111 24455667788999999999999987
Q ss_pred hcCC--HHHHHHHHHHHHHHhcCC-CcchHHHHHHHHHHHHhCCcccc---cccccceeccCCc-HHHHHHHHHHHHhhc
Q 002667 234 IMSP--KEDVKRIVKPLLFILRSS-GASKYVVLCNIQVFAKALPHLFV---PHYEDFFVSSSDS-YQSKALKLEILSSIV 306 (895)
Q Consensus 234 ~lap--~~~l~~~~~pLv~LL~s~-~eiqyvvL~~I~~i~~~~p~lF~---~~l~~Ffi~~sDp-~~IK~lKLeIL~~La 306 (895)
.+.. ...+..++..|-.+|.++ +-.||.+++.|.+++..+|.... ..+..+ -+|+ ..|..+++-.|++-.
T Consensus 271 ~l~~~~~r~l~pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~~cN~elE~l---Itd~NrsIat~AITtLLKTG 347 (865)
T KOG1078|consen 271 SLPNTNSRELAPAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVTVCNLDLESL---ITDSNRSIATLAITTLLKTG 347 (865)
T ss_pred hccccCHhhcchHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccccccchhHHhh---hcccccchhHHHHHHHHHhc
Confidence 7753 455666778887778774 67999999999999999997654 344444 3665 589999999999999
Q ss_pred CCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHHHhhCcchHHHHHHHHHHHHHhhhccccccCCCCCCchhhhHHHHHH
Q 002667 307 TESSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIK 386 (895)
Q Consensus 307 ne~Nv~~IL~EL~~Yv~~~D~ef~~~aI~AIG~~A~~~p~~a~~cl~~Ll~LLs~~~~~~~~~~~~~~~~vv~E~V~vik 386 (895)
++.|+..+++.+..|+.+.+++|+.-.|+||..++.++|......+++|-++|.++ |+. .+....|.+|-
T Consensus 348 ~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k~~~~m~FL~~~Lr~e---Gg~-------e~K~aivd~Ii 417 (865)
T KOG1078|consen 348 TESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRKHTVMMNFLSNMLREE---GGF-------EFKRAIVDAII 417 (865)
T ss_pred chhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHHHHHHHHHHHHHHHhc---cCc-------hHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999863 222 23444555777
Q ss_pred HHHhhCCcchHHHHHHHHHhhhccCchhhHHhhhhhhccccCCCCCccchHHHHHHHHHHhhccCcHHHHHHHHHHHHHH
Q 002667 387 SIIKQDPSCHEKVIIQLFRSLDSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKV 466 (895)
Q Consensus 387 ~Llq~~P~~~~~ii~~L~~~ld~i~~p~ArAsIiWLLGEY~~~~e~ip~ia~dvLr~l~k~F~~E~~~VKlqILtaaaKL 466 (895)
.++.-+|+..+..+.+||..++++..+..-.-|+.++|.-|-. .|. ...+.|+++++..-|...||...+++++|+
T Consensus 418 ~iie~~pdsKe~~L~~LCefIEDce~~~i~~rILhlLG~EgP~---a~~-Pskyir~iyNRviLEn~ivRaaAv~alaKf 493 (865)
T KOG1078|consen 418 DIIEENPDSKERGLEHLCEFIEDCEFTQIAVRILHLLGKEGPK---APN-PSKYIRFIYNRVILENAIVRAAAVSALAKF 493 (865)
T ss_pred HHHHhCcchhhHHHHHHHHHHHhccchHHHHHHHHHHhccCCC---CCC-cchhhHHHhhhhhhhhhhhHHHHHHHHHHH
Confidence 8889999999999999999999999888778899999998853 222 346889999999999999999999999999
Q ss_pred hhhcCCCChHHHHHHHHHHHHHHccCCChHHHhHHHHHHHHccC
Q 002667 467 LLCAKGGDMWTITRLFSYLLELAECDLNYDVRDRARFFKKLFSH 510 (895)
Q Consensus 467 ~~~~p~e~~~~l~~L~qyvL~la~~D~n~DVRDRAr~y~~LL~~ 510 (895)
....+.-.. .+.-+ |..|.+|.|.+|||||+||.+.+..
T Consensus 494 g~~~~~l~~-sI~vl----lkRc~~D~DdevRdrAtf~l~~l~~ 532 (865)
T KOG1078|consen 494 GAQDVVLLP-SILVL----LKRCLNDSDDEVRDRATFYLKNLEE 532 (865)
T ss_pred hcCCCCccc-cHHHH----HHHHhcCchHHHHHHHHHHHHHhhh
Confidence 966554222 23333 4456689999999999999999873
No 12
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=99.78 E-value=1.7e-16 Score=178.81 Aligned_cols=276 Identities=17% Similarity=0.171 Sum_probs=226.8
Q ss_pred hhccCCChHHHHHHHHHHHhcCC----HHHHHHHHHHHHHHhcCC-CcchHHHHHHHHHHHHhCCcccc---ccccccee
Q 002667 215 PLLWSHNSAVVLAAAGVHWIMSP----KEDVKRIVKPLLFILRSS-GASKYVVLCNIQVFAKALPHLFV---PHYEDFFV 286 (895)
Q Consensus 215 pLLqS~NsAVVlaaa~l~~~lap----~~~l~~~~~pLv~LL~s~-~eiqyvvL~~I~~i~~~~p~lF~---~~l~~Ffi 286 (895)
..|.+...+|.|++|++.+.++. ++.+...+..|-.+|.+. .-.||.+++.|..|+..+|+... +.+....
T Consensus 271 ~wls~k~emV~lE~Ar~v~~~~~~nv~~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vcN~evEsLI- 349 (898)
T COG5240 271 SWLSDKFEMVFLEAARAVCALSEENVGSQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVCNKEVESLI- 349 (898)
T ss_pred HHhcCcchhhhHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeecChhHHHHh-
Confidence 34456668999999999888764 356788888998888875 46899999999999999997544 4444443
Q ss_pred ccCCc-HHHHHHHHHHHHhhcCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHHHhhCcchHHHHHHHHHHHHHhhhcc
Q 002667 287 SSSDS-YQSKALKLEILSSIVTESSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLT 365 (895)
Q Consensus 287 ~~sDp-~~IK~lKLeIL~~Lane~Nv~~IL~EL~~Yv~~~D~ef~~~aI~AIG~~A~~~p~~a~~cl~~Ll~LLs~~~~~ 365 (895)
+|. ..|...++.-|.+-.|++|+..+++.+-.|+.|..+.|+.-+|.||..++.+||..-..++++|...|.++
T Consensus 350 --sd~Nr~IstyAITtLLKTGt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~s~l~FL~~~L~~e--- 424 (898)
T COG5240 350 --SDENRTISTYAITTLLKTGTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKLSYLDFLGSSLLQE--- 424 (898)
T ss_pred --hcccccchHHHHHHHHHcCchhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHHHHHHHHHHHHHHhc---
Confidence 443 57999999999999999999999999999999999999999999999999999999999999999988753
Q ss_pred ccccCCCCCCchhhhHHHHHHHHHhhCCcchHHHHHHHHHhhhccCchhhHHhhhhhhccccCCCCCccchHHHHHHHHH
Q 002667 366 SDIESGNGEADVLIQSIISIKSIIKQDPSCHEKVIIQLFRSLDSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLA 445 (895)
Q Consensus 366 ~~~~~~~~~~~vv~E~V~vik~Llq~~P~~~~~ii~~L~~~ld~i~~p~ArAsIiWLLGEY~~~~e~ip~ia~dvLr~l~ 445 (895)
|+=..-.-.|.+|.+++...|+..+.++..||.+++++..+..-..|+-|+|+-+.. .+. ...+.|+++
T Consensus 425 -------Gg~eFK~~~Vdaisd~~~~~p~skEraLe~LC~fIEDcey~~I~vrIL~iLG~EgP~---a~~-P~~yvrhIy 493 (898)
T COG5240 425 -------GGLEFKKYMVDAISDAMENDPDSKERALEVLCTFIEDCEYHQITVRILGILGREGPR---AKT-PGKYVRHIY 493 (898)
T ss_pred -------ccchHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHhhcchhHHHHHHHHHhcccCCC---CCC-cchHHHHHH
Confidence 121233345557889999999999999999999999999999999999999998743 333 346889999
Q ss_pred HhhccCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHccCCChHHHhHHHHHHHHccC
Q 002667 446 WCFKSEAVETKLQILNTTIKVLLCAKGGDMWTITRLFSYLLELAECDLNYDVRDRARFFKKLFSH 510 (895)
Q Consensus 446 k~F~~E~~~VKlqILtaaaKL~~~~p~e~~~~l~~L~qyvL~la~~D~n~DVRDRAr~y~~LL~~ 510 (895)
++..-|...||...+.+..|+.+..... .+.+-..-+|..|..|.|.+|||||-|..+.+..
T Consensus 494 NR~iLEN~ivRsaAv~aLskf~ln~~d~---~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~~ 555 (898)
T COG5240 494 NRLILENNIVRSAAVQALSKFALNISDV---VSPQSVENALKRCLNDQDDEVRDRASFLLRNMRL 555 (898)
T ss_pred HHHHHhhhHHHHHHHHHHHHhccCcccc---ccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhhh
Confidence 9999999999999999999998765332 2233344456667789999999999999988874
No 13
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.40 E-value=1.6e-09 Score=127.06 Aligned_cols=81 Identities=22% Similarity=0.213 Sum_probs=74.8
Q ss_pred CCCCCcccCCcccccCCCCeeEEEEEEecCCCCccceEEEEEcCCeeeeEeecCcccccccccCCHHHHHHHhhcCCCcc
Q 002667 806 SDLPTLVPMEEITSLEPGQTMKRILEVRFHHHLLPLKLALHCNGKKLPVKLRPDIGYFIKPVPMDMETFIEMESRLPGMF 885 (895)
Q Consensus 806 ~~~~~~~~f~~i~~l~p~~~~~~~~~i~f~~~~~~~~~~l~~~~~~~~v~~~p~vgel~~p~~m~~~~f~~~~~~l~GM~ 885 (895)
-..|+.+++.+|+.|.+-+.....+.+.|+++. ++..+++.+.++..+.+.|.+ ..|.-|+.++|..-+..+|||.
T Consensus 768 ~~~p~~i~~~~~ell~~~~g~gl~~~y~f~r~~-~~~i~~~~~n~~~~~~~~~~l---~~p~gm~i~ef~~i~s~~pg~~ 843 (968)
T KOG1060|consen 768 LKIPTHIEEKSIELLNEVEGSGLDLEYSFSRLP-DVSISLHFTNKSDLELLGIHL---KLPAGMSIKEFSPIESLPPGAS 843 (968)
T ss_pred ccCCccCcchhHhhhhhcccCCcceeeeccCCC-CeeEEEecccCCCccccccee---eccccccccccccccccCCCcc
Confidence 356888999999999999999999999999998 799999999999999999887 9999999999999999999999
Q ss_pred ccccc
Q 002667 886 EYARR 890 (895)
Q Consensus 886 e~~~~ 890 (895)
++++.
T Consensus 844 ~~~~~ 848 (968)
T KOG1060|consen 844 ASVVL 848 (968)
T ss_pred eeeee
Confidence 98765
No 14
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.89 E-value=1.1e-07 Score=111.73 Aligned_cols=94 Identities=16% Similarity=0.094 Sum_probs=43.7
Q ss_pred HHHhhcCCCCchhhHHHHHHHHHHhccCCcchhHHHHHHHHHHhcCCChhHHHHHHHHHHHhCCCCccchHHHHHHHHHh
Q 002667 16 AVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNNFTLIGRNYRNLCQI 95 (895)
Q Consensus 16 aIkk~l~D~SPYVRK~AA~AI~Kly~ld~pd~~~~L~eil~~LL~D~~p~VvgsAv~Af~EIcP~r~dLihk~yrkLc~~ 95 (895)
.+-+.+...++.+||.+-+++..+...+ |+..-..+..+.+=|.+++|.+.+.|+.++..++.. +++...+..+.++
T Consensus 46 ~vi~l~~s~~~~~Krl~yl~l~~~~~~~-~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~~~--~~~~~l~~~v~~l 122 (526)
T PF01602_consen 46 EVIKLISSKDLELKRLGYLYLSLYLHED-PELLILIINSLQKDLNSPNPYIRGLALRTLSNIRTP--EMAEPLIPDVIKL 122 (526)
T ss_dssp HHHCTCSSSSHHHHHHHHHHHHHHTTTS-HHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH-SH--HHHHHHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHhhcc-hhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhccc--chhhHHHHHHHHH
Confidence 3334444555555555555555555555 443333444444445555555555555555555421 2333333444444
Q ss_pred CCCCChhhHHHHHHHHH
Q 002667 96 LPDVEEWGQILLIEILL 112 (895)
Q Consensus 96 L~d~dEWgQv~iL~lL~ 112 (895)
|.+-++.-+-..+-.+.
T Consensus 123 l~~~~~~VRk~A~~~l~ 139 (526)
T PF01602_consen 123 LSDPSPYVRKKAALALL 139 (526)
T ss_dssp HHSSSHHHHHHHHHHHH
T ss_pred hcCCchHHHHHHHHHHH
Confidence 44444444443333333
No 15
>PTZ00429 beta-adaptin; Provisional
Probab=98.29 E-value=0.0011 Score=81.62 Aligned_cols=86 Identities=15% Similarity=0.066 Sum_probs=57.4
Q ss_pred HHhhcCCCCchhhHHHHHHHHHHhccCCcchhHHHHHHHHHHhcCCChhHHHHHHHHHHHhCCCCccchHHHHHHHHHhC
Q 002667 17 VGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNNFTLIGRNYRNLCQIL 96 (895)
Q Consensus 17 Ikk~l~D~SPYVRK~AA~AI~Kly~ld~pd~~~~L~eil~~LL~D~~p~VvgsAv~Af~EIcP~r~dLihk~yrkLc~~L 96 (895)
|-|++...+.-+||-.-+.+...-+.. ||..-..+.-+.+=|.|+||.|-|.|+..+..|.-. +++-...+.+-+.|
T Consensus 73 Vvk~~~S~d~elKKLvYLYL~~ya~~~-pelalLaINtl~KDl~d~Np~IRaLALRtLs~Ir~~--~i~e~l~~~lkk~L 149 (746)
T PTZ00429 73 VVKLAPSTDLELKKLVYLYVLSTARLQ-PEKALLAVNTFLQDTTNSSPVVRALAVRTMMCIRVS--SVLEYTLEPLRRAV 149 (746)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHcccC-hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCCcH--HHHHHHHHHHHHHh
Confidence 334777778888888888887776666 665545556666667888999999888888777522 12333344555566
Q ss_pred CCCChhhHH
Q 002667 97 PDVEEWGQI 105 (895)
Q Consensus 97 ~d~dEWgQv 105 (895)
.|.+++=.-
T Consensus 150 ~D~~pYVRK 158 (746)
T PTZ00429 150 ADPDPYVRK 158 (746)
T ss_pred cCCCHHHHH
Confidence 777776633
No 16
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.21 E-value=0.00014 Score=91.90 Aligned_cols=90 Identities=17% Similarity=0.130 Sum_probs=67.5
Q ss_pred HHHHHHhhcCCCCchhhHHHHHHHHHHhccCCcchhHHHHHHHHHHhcCCChhHHHHHHHHHHHhCCCCccchHHHHHHH
Q 002667 13 VLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNNFTLIGRNYRNL 92 (895)
Q Consensus 13 v~~aIkk~l~D~SPYVRK~AA~AI~Kly~ld~pd~~~~L~eil~~LL~D~~p~VvgsAv~Af~EIcP~r~dLihk~yrkL 92 (895)
.+..+.+.+.|.+|-||+.|+.++.++. + + ..++.|..+|.|.++.|-..|+.++.++-... +.-..|
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~--~-~----~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~-----~~~~~L 689 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETT--P-P----GFGPALVAALGDGAAAVRRAAAEGLRELVEVL-----PPAPAL 689 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhc--c-h----hHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc-----CchHHH
Confidence 4567788899999999999999999863 2 2 24455667889999999999999998883110 011356
Q ss_pred HHhCCCCChhhHHHHHHHHHhh
Q 002667 93 CQILPDVEEWGQILLIEILLRY 114 (895)
Q Consensus 93 c~~L~d~dEWgQv~iL~lL~rY 114 (895)
...|.+-|++-+..+++.|...
T Consensus 690 ~~~L~~~d~~VR~~A~~aL~~~ 711 (897)
T PRK13800 690 RDHLGSPDPVVRAAALDVLRAL 711 (897)
T ss_pred HHHhcCCCHHHHHHHHHHHHhh
Confidence 6777888888888888877653
No 17
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=98.20 E-value=6.2e-06 Score=84.50 Aligned_cols=111 Identities=25% Similarity=0.310 Sum_probs=92.3
Q ss_pred CccchhhhHHHHHHHHhhcCCCCchhhHHHHHHHHHHhccCCcc-hhHHH-HHHHHHHhcCCChhHHHHHHHHHHHhCCC
Q 002667 3 GIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEE-ITSAI-EEIVGILLNDRSPGVVGAAAAAFASICPN 80 (895)
Q Consensus 3 sIRv~~I~piv~~aIkk~l~D~SPYVRK~AA~AI~Kly~ld~pd-~~~~L-~eil~~LL~D~~p~VvgsAv~Af~EIcP~ 80 (895)
.+|.|.+++..++.+.+++.|++|+|||+|++++.+|..-+ .- -++.+ ..++ .+|.|.++.|...|...|.++...
T Consensus 16 ~~r~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d-~ik~k~~l~~~~l-~~l~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 16 CIRYPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILED-MIKVKGQLFSRIL-KLLVDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred HHhCcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcC-ceeehhhhhHHHH-HHHcCCCHHHHHHHHHHHHHHHHh
Confidence 57999999999999999999999999999999999998876 44 56666 5554 578999999999999999999755
Q ss_pred -CccchHHHHHHHHHhCCCCChhhHH---------HHHHHHHhhh
Q 002667 81 -NFTLIGRNYRNLCQILPDVEEWGQI---------LLIEILLRYV 115 (895)
Q Consensus 81 -r~dLihk~yrkLc~~L~d~dEWgQv---------~iL~lL~rY~ 115 (895)
.-..+..++-.++..|.+..+|.+. .|++.|..|.
T Consensus 94 ~~~~~i~~~~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fll~~i 138 (178)
T PF12717_consen 94 RNPNIIYNNFPELISSLNNCYEHPVYGPLSREKRKKIYKFLLDFI 138 (178)
T ss_pred ccchHHHHHHHHHHHHHhCccccccccccCHHHHHHHHHHHHHHc
Confidence 4567788888888888888888633 5666666665
No 18
>PRK09687 putative lyase; Provisional
Probab=98.07 E-value=0.00034 Score=77.01 Aligned_cols=235 Identities=12% Similarity=0.054 Sum_probs=160.0
Q ss_pred HHHHHHhhcCCCCchhhHHHHHHHHHHhccCCcchhHHHHHHHHHHhcCCChhHHHHHHHHHHHhCC-CCccchHHHHHH
Q 002667 13 VLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICP-NNFTLIGRNYRN 91 (895)
Q Consensus 13 v~~aIkk~l~D~SPYVRK~AA~AI~Kly~ld~pd~~~~L~eil~~LL~D~~p~VvgsAv~Af~EIcP-~r~dLihk~yrk 91 (895)
-+..+.+.+.|.++.||..|+.++.++ . .+...+.+..|+.|.++.|-..|+.+|-++-. ++. ....+.-
T Consensus 24 ~~~~L~~~L~d~d~~vR~~A~~aL~~~---~----~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~--~~~a~~~ 94 (280)
T PRK09687 24 NDDELFRLLDDHNSLKRISSIRVLQLR---G----GQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC--QDNVFNI 94 (280)
T ss_pred cHHHHHHHHhCCCHHHHHHHHHHHHhc---C----cchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc--hHHHHHH
Confidence 356678889999999999999998855 2 13345556678899999999999999999863 221 2234555
Q ss_pred HHHh-CCCCChhhHHHHHHHHHhhhhhcccccchhhhhhhhhcccCCCcccccccccccccCCCCCCccchhhhhhhhhh
Q 002667 92 LCQI-LPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRTYDSELVNLVSRS 170 (895)
Q Consensus 92 Lc~~-L~d~dEWgQv~iL~lL~rY~r~~~~~~~ps~~f~~~~~~~~~~~e~~~~~~~~l~~q~~~~~~~~~~~~~~~~~~ 170 (895)
|..+ +.|-+++-+...+..|...+...
T Consensus 95 L~~l~~~D~d~~VR~~A~~aLG~~~~~~---------------------------------------------------- 122 (280)
T PRK09687 95 LNNLALEDKSACVRASAINATGHRCKKN---------------------------------------------------- 122 (280)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhcccccc----------------------------------------------------
Confidence 5555 45566555666666665543100
Q ss_pred cccccccccccCCCcccccccccCccccCCCCChhHHHHHHhhhhhccCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002667 171 YIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSPKEDVKRIVKPLLF 250 (895)
Q Consensus 171 ~~~~~d~~~~~s~~~~~~~~~~~~~~~~~~~~d~D~~lLL~~~~pLLqS~NsAVVlaaa~l~~~lap~~~l~~~~~pLv~ 250 (895)
..++ ..++..+..++.+.++-|-++++..+-.+..+ .++.+|+.
T Consensus 123 -------------------------------~~~~-~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~----~ai~~L~~ 166 (280)
T PRK09687 123 -------------------------------PLYS-PKIVEQSQITAFDKSTNVRFAVAFALSVINDE----AAIPLLIN 166 (280)
T ss_pred -------------------------------cccc-hHHHHHHHHHhhCCCHHHHHHHHHHHhccCCH----HHHHHHHH
Confidence 0000 12344566677788899999999887666543 57788999
Q ss_pred HhcC-CCcchHHHHHHHHHHHHhCCcccccccccceeccCCc-HHHHHHHHHHHHhhcCCCCHHHHHHHHHHhhccCChh
Q 002667 251 ILRS-SGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDS-YQSKALKLEILSSIVTESSISSVFKEFQDYIRDPDRR 328 (895)
Q Consensus 251 LL~s-~~eiqyvvL~~I~~i~~~~p~lF~~~l~~Ffi~~sDp-~~IK~lKLeIL~~Lane~Nv~~IL~EL~~Yv~~~D~e 328 (895)
+|.. +++|++-+...+..+....|.....-.... .|+ ..||...+.-|-.+-++.-+..|++.|. +.+
T Consensus 167 ~L~d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L----~D~~~~VR~~A~~aLg~~~~~~av~~Li~~L~----~~~-- 236 (280)
T PRK09687 167 LLKDPNGDVRNWAAFALNSNKYDNPDIREAFVAML----QDKNEEIRIEAIIGLALRKDKRVLSVLIKELK----KGT-- 236 (280)
T ss_pred HhcCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHh----cCCChHHHHHHHHHHHccCChhHHHHHHHHHc----CCc--
Confidence 9975 578898888888777333444433322222 443 6899999999999988877777777766 233
Q ss_pred HHHHHHHHHHHHHhhCcchHHHHHHHHHHHHH
Q 002667 329 FAADTVAAIGLCARKLPKMANTCVEGLLALIR 360 (895)
Q Consensus 329 f~~~aI~AIG~~A~~~p~~a~~cl~~Ll~LLs 360 (895)
+...++.|+|.++.. ..+..|..++.
T Consensus 237 ~~~~a~~ALg~ig~~------~a~p~L~~l~~ 262 (280)
T PRK09687 237 VGDLIIEAAGELGDK------TLLPVLDTLLY 262 (280)
T ss_pred hHHHHHHHHHhcCCH------hHHHHHHHHHh
Confidence 677899999987753 56677777775
No 19
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=97.79 E-value=0.0018 Score=82.13 Aligned_cols=229 Identities=14% Similarity=0.093 Sum_probs=154.5
Q ss_pred HHHHHHHHhhcCCCCchhhHHHHHHHHHHhccCCcchhHHHHHHHHHHhcCCChhHHHHHHHHHHHhCCCCccchHHHHH
Q 002667 11 PLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNNFTLIGRNYR 90 (895)
Q Consensus 11 piv~~aIkk~l~D~SPYVRK~AA~AI~Kly~ld~pd~~~~L~eil~~LL~D~~p~VvgsAv~Af~EIcP~r~dLihk~yr 90 (895)
|-.+..|.+++.|.++-||.+|+-++.++-... +. . ..+..+|.|.++.|-.+|+.+|..+-+.. ..
T Consensus 651 ~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~-~~-~----~~L~~~L~~~d~~VR~~A~~aL~~~~~~~-------~~ 717 (897)
T PRK13800 651 PGFGPALVAALGDGAAAVRRAAAEGLRELVEVL-PP-A----PALRDHLGSPDPVVRAAALDVLRALRAGD-------AA 717 (897)
T ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc-Cc-h----HHHHHHhcCCCHHHHHHHHHHHHhhccCC-------HH
Confidence 334567778899999999999999998874322 21 1 24446788999999999999998875432 13
Q ss_pred HHHHhCCCCChhhHHHHHHHHHhhhhhcccccchhhhhhhhhcccCCCcccccccccccccCCCCCCccchhhhhhhhhh
Q 002667 91 NLCQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRTYDSELVNLVSRS 170 (895)
Q Consensus 91 kLc~~L~d~dEWgQv~iL~lL~rY~r~~~~~~~ps~~f~~~~~~~~~~~e~~~~~~~~l~~q~~~~~~~~~~~~~~~~~~ 170 (895)
.|+..|.|-|++-+...+..|......
T Consensus 718 ~l~~~L~D~d~~VR~~Av~aL~~~~~~----------------------------------------------------- 744 (897)
T PRK13800 718 LFAAALGDPDHRVRIEAVRALVSVDDV----------------------------------------------------- 744 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhcccCc-----------------------------------------------------
Confidence 467788899988877777766643100
Q ss_pred cccccccccccCCCcccccccccCccccCCCCChhHHHHHHhhhhhccCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002667 171 YIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSPKEDVKRIVKPLLF 250 (895)
Q Consensus 171 ~~~~~d~~~~~s~~~~~~~~~~~~~~~~~~~~d~D~~lLL~~~~pLLqS~NsAVVlaaa~l~~~lap~~~l~~~~~pLv~ 250 (895)
..+..+|...|+-|-.+++..+-.+..... .....|+.
T Consensus 745 ----------------------------------------~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~--~~~~~L~~ 782 (897)
T PRK13800 745 ----------------------------------------ESVAGAATDENREVRIAVAKGLATLGAGGA--PAGDAVRA 782 (897)
T ss_pred ----------------------------------------HHHHHHhcCCCHHHHHHHHHHHHHhccccc--hhHHHHHH
Confidence 012345677788899999988877754321 22456778
Q ss_pred HhcC-CCcchHHHHHHHHHHHHhCCcccccccccceeccCCcHHHHHHHHHHHHhhcCCCCHHHHHHHHHHhhccCChhH
Q 002667 251 ILRS-SGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKLEILSSIVTESSISSVFKEFQDYIRDPDRRF 329 (895)
Q Consensus 251 LL~s-~~eiqyvvL~~I~~i~~~~p~lF~~~l~~Ffi~~sDp~~IK~lKLeIL~~Lane~Nv~~IL~EL~~Yv~~~D~ef 329 (895)
++.. ++++|..++..|..+-. +......+..+ ..++...||...++.|..+.++.-+ .-|...+.|.+..+
T Consensus 783 ll~D~d~~VR~aA~~aLg~~g~--~~~~~~~l~~a--L~d~d~~VR~~Aa~aL~~l~~~~a~----~~L~~~L~D~~~~V 854 (897)
T PRK13800 783 LTGDPDPLVRAAALAALAELGC--PPDDVAAATAA--LRASAWQVRQGAARALAGAAADVAV----PALVEALTDPHLDV 854 (897)
T ss_pred HhcCCCHHHHHHHHHHHHhcCC--cchhHHHHHHH--hcCCChHHHHHHHHHHHhccccchH----HHHHHHhcCCCHHH
Confidence 8874 68899999888876632 22111222222 1233457999999999998766544 34444557889999
Q ss_pred HHHHHHHHHHHHhhCcchHHHHHHHHHHHHH
Q 002667 330 AADTVAAIGLCARKLPKMANTCVEGLLALIR 360 (895)
Q Consensus 330 ~~~aI~AIG~~A~~~p~~a~~cl~~Ll~LLs 360 (895)
++.+++++|++ ..+ ......|...++
T Consensus 855 R~~A~~aL~~~--~~~---~~a~~~L~~al~ 880 (897)
T PRK13800 855 RKAAVLALTRW--PGD---PAARDALTTALT 880 (897)
T ss_pred HHHHHHHHhcc--CCC---HHHHHHHHHHHh
Confidence 99999999985 122 234555666665
No 20
>PRK09687 putative lyase; Provisional
Probab=97.75 E-value=0.0019 Score=71.06 Aligned_cols=244 Identities=14% Similarity=0.059 Sum_probs=159.4
Q ss_pred HhhhhhccCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHHhCC--cccccccccceec
Q 002667 211 QCTSPLLWSHNSAVVLAAAGVHWIMSPKEDVKRIVKPLLFILRS-SGASKYVVLCNIQVFAKALP--HLFVPHYEDFFVS 287 (895)
Q Consensus 211 ~~~~pLLqS~NsAVVlaaa~l~~~lap~~~l~~~~~pLv~LL~s-~~eiqyvvL~~I~~i~~~~p--~lF~~~l~~Ffi~ 287 (895)
+-+.++|.+.|.-|-.+++..+-.+..+ .+...+..|+.+ ++.+|..+...+..|-.... .-..+.+..++
T Consensus 26 ~~L~~~L~d~d~~vR~~A~~aL~~~~~~----~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~-- 99 (280)
T PRK09687 26 DELFRLLDDHNSLKRISSIRVLQLRGGQ----DVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLA-- 99 (280)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcCcc----hHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHH--
Confidence 4466778999999999999998777654 344455667765 68899998888887643211 01223333332
Q ss_pred cCCc-HHHHHHHHHHHHhhcCCCC--HHHHHHHHHHhhccCChhHHHHHHHHHHHHHhhCcchHHHHHHHHHHHHHhhhc
Q 002667 288 SSDS-YQSKALKLEILSSIVTESS--ISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELL 364 (895)
Q Consensus 288 ~sDp-~~IK~lKLeIL~~Lane~N--v~~IL~EL~~Yv~~~D~ef~~~aI~AIG~~A~~~p~~a~~cl~~Ll~LLs~~~~ 364 (895)
.+|+ ..||.-....|-.++.... ....+..|.....+.+..++..++.++|.+. ....+..|+.+|+.
T Consensus 100 ~~D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~------~~~ai~~L~~~L~d--- 170 (280)
T PRK09687 100 LEDKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVIN------DEAAIPLLINLLKD--- 170 (280)
T ss_pred hcCCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccC------CHHHHHHHHHHhcC---
Confidence 2454 5799999999999976554 2467777888888889999999999998764 23577889998873
Q ss_pred cccccCCCCCCchhhhHHHHHHHHHhhCCcchHHHHHHHHHhhhccCchhhHHhhhhhhccccCCCCCccchHHHHHHHH
Q 002667 365 TSDIESGNGEADVLIQSIISIKSIIKQDPSCHEKVIIQLFRSLDSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYL 444 (895)
Q Consensus 365 ~~~~~~~~~~~~vv~E~V~vik~Llq~~P~~~~~ii~~L~~~ld~i~~p~ArAsIiWLLGEY~~~~e~ip~ia~dvLr~l 444 (895)
.+..|-..++..|-.+ +.....++..|...+.+ .++..|...+|-+|+.++ +..+|.+++.+
T Consensus 171 --------~~~~VR~~A~~aLg~~----~~~~~~~~~~L~~~L~D-~~~~VR~~A~~aLg~~~~-----~~av~~Li~~L 232 (280)
T PRK09687 171 --------PNGDVRNWAAFALNSN----KYDNPDIREAFVAMLQD-KNEEIRIEAIIGLALRKD-----KRVLSVLIKEL 232 (280)
T ss_pred --------CCHHHHHHHHHHHhcC----CCCCHHHHHHHHHHhcC-CChHHHHHHHHHHHccCC-----hhHHHHHHHHH
Confidence 2333444455555544 22234566777776743 357889999999999874 23445555544
Q ss_pred HHhhccCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHccCCChHHHhHHHH
Q 002667 445 AWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTITRLFSYLLELAECDLNYDVRDRARF 503 (895)
Q Consensus 445 ~k~F~~E~~~VKlqILtaaaKL~~~~p~e~~~~l~~L~qyvL~la~~D~n~DVRDRAr~ 503 (895)
- ... ++..+..++..+-- | +.+-.+.++...+.|..||.+|+.
T Consensus 233 ~----~~~--~~~~a~~ALg~ig~--~--------~a~p~L~~l~~~~~d~~v~~~a~~ 275 (280)
T PRK09687 233 K----KGT--VGDLIIEAAGELGD--K--------TLLPVLDTLLYKFDDNEIITKAID 275 (280)
T ss_pred c----CCc--hHHHHHHHHHhcCC--H--------hHHHHHHHHHhhCCChhHHHHHHH
Confidence 3 222 56667777666521 1 123333444445668999998875
No 21
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=97.43 E-value=0.053 Score=64.64 Aligned_cols=110 Identities=16% Similarity=0.179 Sum_probs=84.8
Q ss_pred chhhhHHHHHHHHhhcCCCCchhhHHHHHHHHHHhccCCcc-----hhHHHHHHHHHHhcCCChhHHHHHHHHHHHhCCC
Q 002667 6 LHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEE-----ITSAIEEIVGILLNDRSPGVVGAAAAAFASICPN 80 (895)
Q Consensus 6 v~~I~piv~~aIkk~l~D~SPYVRK~AA~AI~Kly~ld~pd-----~~~~L~eil~~LL~D~~p~VvgsAv~Af~EIcP~ 80 (895)
...+.|-....+.+++.+++|.||.-|+.+|.++-+.. .. ....+...|-.+|.|.+..|...|+.++..++..
T Consensus 71 ~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~-~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~ 149 (503)
T PF10508_consen 71 PDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHS-EGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASH 149 (503)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCC-HHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCC
Confidence 34557888899999999999999999999999986543 22 2344677777889999999999999999999865
Q ss_pred Cccc--h-HH-HHHHHHHhCCCCChhhHHHHHHHHHhhhh
Q 002667 81 NFTL--I-GR-NYRNLCQILPDVEEWGQILLIEILLRYVV 116 (895)
Q Consensus 81 r~dL--i-hk-~yrkLc~~L~d~dEWgQv~iL~lL~rY~r 116 (895)
...+ + .. ...+|.+.+...++=.++.+++++...+.
T Consensus 150 ~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~ 189 (503)
T PF10508_consen 150 PEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIAS 189 (503)
T ss_pred chhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHh
Confidence 4222 2 22 25677777777788888888888877764
No 22
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=97.30 E-value=0.16 Score=68.57 Aligned_cols=198 Identities=14% Similarity=0.159 Sum_probs=112.0
Q ss_pred CCcHHHHHHHHHHHHhhcCC--CCHHHH-----HHHHHHhhccCChhHHHHHHHHHHHHHhhCcc------hHHHHHHHH
Q 002667 289 SDSYQSKALKLEILSSIVTE--SSISSV-----FKEFQDYIRDPDRRFAADTVAAIGLCARKLPK------MANTCVEGL 355 (895)
Q Consensus 289 sDp~~IK~lKLeIL~~Lane--~Nv~~I-----L~EL~~Yv~~~D~ef~~~aI~AIG~~A~~~p~------~a~~cl~~L 355 (895)
++...+|.....+|.++++. +++..+ +.-|..-+.+.+.+.++++..||+.++..... +...|+..|
T Consensus 620 sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL 699 (2102)
T PLN03200 620 SSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPL 699 (2102)
T ss_pred CCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHH
Confidence 44456777777777777652 222222 22344555666777888888888888843221 223578889
Q ss_pred HHHHHhhhccccccCCCCCCchhhhHHHHHHHHHhhCCcc----hHHHHHHHHHhhhccCchhhHHhhhhhhccccCCCC
Q 002667 356 LALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQDPSC----HEKVIIQLFRSLDSIKVPEARVMIIWMVGEYSSVGV 431 (895)
Q Consensus 356 l~LLs~~~~~~~~~~~~~~~~vv~E~V~vik~Llq~~P~~----~~~ii~~L~~~ld~i~~p~ArAsIiWLLGEY~~~~e 431 (895)
++||+. .+..++.+++..|..|++..... ...+|..|++.+.+= .+..|...+|.+.+-|....
T Consensus 700 ~~LL~~-----------~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G-~~~~k~~Aa~AL~~L~~~~~ 767 (2102)
T PLN03200 700 IKLAKS-----------SSIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLREG-TLEGKRNAARALAQLLKHFP 767 (2102)
T ss_pred HHHHhC-----------CChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHhC-ChHHHHHHHHHHHHHHhCCC
Confidence 998874 23346667777787777543322 234477777777643 36778888888877664221
Q ss_pred CccchHHHHH-HHHH------------HhhccCcHHH--HHHHHHHHHHHh----hhcCC-----CChHHHHHHHHHHHH
Q 002667 432 KIPRMLTTVL-KYLA------------WCFKSEAVET--KLQILNTTIKVL----LCAKG-----GDMWTITRLFSYLLE 487 (895)
Q Consensus 432 ~ip~ia~dvL-r~l~------------k~F~~E~~~V--KlqILtaaaKL~----~~~p~-----e~~~~l~~L~qyvL~ 487 (895)
..+++ ..+. +.-..+...+ =+..|.+.+|.- ...|. |....+..|++.+
T Consensus 768 -----~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~e~p~~l~~l~~~l-- 840 (2102)
T PLN03200 768 -----VDDVLKDSVQCRGTVLALVDLLNSTDLDSSATSEALEALALLARTKGGANFSHPPWAVLAEVPSSLEPLVRCL-- 840 (2102)
T ss_pred -----hhHHHHHHHHHhCcHHHHHHHHhcCCcchhhHHHHHHHHHHHHhhcccCCCCCCchhhHHhccCchHHHHHHH--
Confidence 12222 1111 1112233333 566777777741 01111 1111344555533
Q ss_pred HHccCCChHHHhHHHHHHHHc
Q 002667 488 LAECDLNYDVRDRARFFKKLF 508 (895)
Q Consensus 488 la~~D~n~DVRDRAr~y~~LL 508 (895)
.+.+|+|+|+|-....=|
T Consensus 841 ---~~~~p~~~~kai~il~~~ 858 (2102)
T PLN03200 841 ---AEGHPLVQDKAIEILSRL 858 (2102)
T ss_pred ---HcCChHHHHHHHHHHHHH
Confidence 467999999998776544
No 23
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.17 E-value=0.14 Score=61.59 Aligned_cols=287 Identities=14% Similarity=0.162 Sum_probs=193.3
Q ss_pred hhhHHHHHHHHhhcCCCCchhhHHHHHHHHHHhccCCcchhHHHHHHHHHHhcCCChhHHHHHHHHHHHhCCCCccchHH
Q 002667 8 VISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNNFTLIGR 87 (895)
Q Consensus 8 ~I~piv~~aIkk~l~D~SPYVRK~AA~AI~Kly~ld~pd~~~~L~eil~~LL~D~~p~VvgsAv~Af~EIcP~r~dLihk 87 (895)
.+.-+.+.-++|-+...+-|==-.|.-|+. ||- - |+...+|..-+-.||+-+-|.|--=|+.+++.||-.--+-+.+
T Consensus 105 dvlmL~tn~~rkdl~S~n~ye~giAL~GLS-~fv-T-pdLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAlr~ 181 (877)
T KOG1059|consen 105 DVLMLTTNLLRKDLNSSNVYEVGLALSGLS-CIV-T-PDLARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEALRP 181 (877)
T ss_pred cHHHHHHHHHHHHhccCccchhhheecccc-ccc-C-chhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhHhh
Confidence 355567777888888666664444444444 222 3 7778888888889999999999999999999998554456889
Q ss_pred HHHHHHHhCCCCChhhHHHHHHHHHhhhhhcccccchhhhhhhhhcccCCCcccccccccccccCCCCCCccchhhhhhh
Q 002667 88 NYRNLCQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRTYDSELVNLV 167 (895)
Q Consensus 88 ~yrkLc~~L~d~dEWgQv~iL~lL~rY~r~~~~~~~ps~~f~~~~~~~~~~~e~~~~~~~~l~~q~~~~~~~~~~~~~~~ 167 (895)
+|.||...|.|-|+=-|....+++-..+|.+ |.
T Consensus 182 ~FprL~EkLeDpDp~V~SAAV~VICELArKn-----Pk------------------------------------------ 214 (877)
T KOG1059|consen 182 CFPRLVEKLEDPDPSVVSAAVSVICELARKN-----PQ------------------------------------------ 214 (877)
T ss_pred hHHHHHHhccCCCchHHHHHHHHHHHHHhhC-----Cc------------------------------------------
Confidence 9999999999999999999999999988742 10
Q ss_pred hhhcccccccccccCCCcccccccccCccccCCCCChhHHHHHHhhhhhccCCChHHHHHHHHHHHhcCC--HHHHHHHH
Q 002667 168 SRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSP--KEDVKRIV 245 (895)
Q Consensus 168 ~~~~~~~~d~~~~~s~~~~~~~~~~~~~~~~~~~~d~D~~lLL~~~~pLLqS~NsAVVlaaa~l~~~lap--~~~l~~~~ 245 (895)
.|+ .+.|+...| +..|+|.=|..-.+++|-.++| |.--++++
T Consensus 215 ---------nyL---------------------~LAP~ffkl------lttSsNNWmLIKiiKLF~aLtplEPRLgKKLi 258 (877)
T KOG1059|consen 215 ---------NYL---------------------QLAPLFYKL------LVTSSNNWVLIKLLKLFAALTPLEPRLGKKLI 258 (877)
T ss_pred ---------ccc---------------------cccHHHHHH------HhccCCCeehHHHHHHHhhccccCchhhhhhh
Confidence 011 023333333 2357888899999999999998 44567789
Q ss_pred HHHHHHhcCCCcchHHHHHHHHHHHHhCCcccccccccceeccCCcHHHHHHHHHHHHhhcCCCCHHHHHHHHHHhhccC
Q 002667 246 KPLLFILRSSGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKLEILSSIVTESSISSVFKEFQDYIRDP 325 (895)
Q Consensus 246 ~pLv~LL~s~~eiqyvvL~~I~~i~~~~p~lF~~~l~~Ffi~~sDp~~IK~lKLeIL~~Lane~Nv~~IL~EL~~Yv~~~ 325 (895)
.||.-|+++-.. .-+...+|.+++.. ++-..+ .|. ...++.-+..|..++.+.
T Consensus 259 eplt~li~sT~A-mSLlYECvNTVVa~--s~s~g~--------~d~----------------~asiqLCvqKLr~fieds 311 (877)
T KOG1059|consen 259 EPITELMESTVA-MSLLYECVNTVVAV--SMSSGM--------SDH----------------SASIQLCVQKLRIFIEDS 311 (877)
T ss_pred hHHHHHHHhhHH-HHHHHHHHHHheee--hhccCC--------CCc----------------HHHHHHHHHHHhhhhhcC
Confidence 999999976433 33456677777654 222222 111 112333466777888888
Q ss_pred ChhHHHHHHHHHHHHHhhCcchHHHHHHHHHHHHHhhhccccccCCCCCCchhhhHHHHHHHHHhhCCcchHHHHHHHHH
Q 002667 326 DRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQDPSCHEKVIIQLFR 405 (895)
Q Consensus 326 D~ef~~~aI~AIG~~A~~~p~~a~~cl~~Ll~LLs~~~~~~~~~~~~~~~~vv~E~V~vik~Llq~~P~~~~~ii~~L~~ 405 (895)
|..++--...|+++++...|+.....-+.++++|.. .|+.+-..++.-+-.++ +.+....|++.|+.
T Consensus 312 DqNLKYlgLlam~KI~ktHp~~Vqa~kdlIlrcL~D-----------kD~SIRlrALdLl~gmV--skkNl~eIVk~LM~ 378 (877)
T KOG1059|consen 312 DQNLKYLGLLAMSKILKTHPKAVQAHKDLILRCLDD-----------KDESIRLRALDLLYGMV--SKKNLMEIVKTLMK 378 (877)
T ss_pred CccHHHHHHHHHHHHhhhCHHHHHHhHHHHHHHhcc-----------CCchhHHHHHHHHHHHh--hhhhHHHHHHHHHH
Confidence 988988899999999999999998888999998862 23323223332222222 22234466667776
Q ss_pred hhhccCchhhHHhhh
Q 002667 406 SLDSIKVPEARVMII 420 (895)
Q Consensus 406 ~ld~i~~p~ArAsIi 420 (895)
++..-....-|-.++
T Consensus 379 ~~~~ae~t~yrdell 393 (877)
T KOG1059|consen 379 HVEKAEGTNYRDELL 393 (877)
T ss_pred HHHhccchhHHHHHH
Confidence 665443333333333
No 24
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.16 E-value=0.058 Score=65.48 Aligned_cols=142 Identities=15% Similarity=0.197 Sum_probs=84.7
Q ss_pred HHHHHhhhhhccCCChHHHHHHHHHHHhcC---C--HHHHHHHHHHHHHHhcC------CCcchHHHHHHHHHHHHhCCc
Q 002667 207 KLLLQCTSPLLWSHNSAVVLAAAGVHWIMS---P--KEDVKRIVKPLLFILRS------SGASKYVVLCNIQVFAKALPH 275 (895)
Q Consensus 207 ~lLL~~~~pLLqS~NsAVVlaaa~l~~~la---p--~~~l~~~~~pLv~LL~s------~~eiqyvvL~~I~~i~~~~p~ 275 (895)
..|+.....+|.+++.+|.+++..+++.+. | .+.++.++.-|++.|+. +||--| -+
T Consensus 178 e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~yspeydv-------------~g 244 (866)
T KOG1062|consen 178 EHFVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTNSGYSPEYDV-------------HG 244 (866)
T ss_pred HHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCc-------------cC
Confidence 467777888999999999999999987663 2 24577888888877642 222111 12
Q ss_pred cccccccc-----ceeccCCcHHHHHHHHHHHHhhcC----CCCHH-HHHHHHHHhhcc--CChhHHHHHHHHHHHHHhh
Q 002667 276 LFVPHYED-----FFVSSSDSYQSKALKLEILSSIVT----ESSIS-SVFKEFQDYIRD--PDRRFAADTVAAIGLCARK 343 (895)
Q Consensus 276 lF~~~l~~-----Ffi~~sDp~~IK~lKLeIL~~Lan----e~Nv~-~IL~EL~~Yv~~--~D~ef~~~aI~AIG~~A~~ 343 (895)
+-.||+.. .-++..+......+-=|||..+++ ..|+. .||=|=-..+.+ .+..++..||..||+.-.+
T Consensus 245 i~dPFLQi~iLrlLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n 324 (866)
T KOG1062|consen 245 ISDPFLQIRILRLLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLN 324 (866)
T ss_pred CCchHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcC
Confidence 22233211 111222222356666678888875 34554 566665554444 4557888888888886544
Q ss_pred CcchHH-HHHHHHHHHHHh
Q 002667 344 LPKMAN-TCVEGLLALIRQ 361 (895)
Q Consensus 344 ~p~~a~-~cl~~Ll~LLs~ 361 (895)
-..... -.|+.|+.+++.
T Consensus 325 ~d~NirYvaLn~L~r~V~~ 343 (866)
T KOG1062|consen 325 RDNNIRYVALNMLLRVVQQ 343 (866)
T ss_pred CccceeeeehhhHHhhhcC
Confidence 333222 335666666653
No 25
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=97.11 E-value=0.078 Score=71.29 Aligned_cols=352 Identities=14% Similarity=0.105 Sum_probs=221.6
Q ss_pred HHHHHHhhcCCCCchhhHHHHHHHHHHhccCCcchhH-----HHHHHHHHHhcCCChhHHHHHHHHHHHhCCCC---ccc
Q 002667 13 VLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITS-----AIEEIVGILLNDRSPGVVGAAAAAFASICPNN---FTL 84 (895)
Q Consensus 13 v~~aIkk~l~D~SPYVRK~AA~AI~Kly~ld~pd~~~-----~L~eil~~LL~D~~p~VvgsAv~Af~EIcP~r---~dL 84 (895)
.++.+-+.+.+.++-+|+.|+.++..+-.-. ++++. ..++.|-.||...++.+.-.|+.++..+|-+. -.+
T Consensus 447 gIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~n-denr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~i 525 (2102)
T PLN03200 447 GVQLLISLLGLSSEQQQEYAVALLAILTDEV-DESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRAC 525 (2102)
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 3566677788889999999999998887655 45443 34557778898889999999999999998532 223
Q ss_pred h--HHHHHHHHHhCCCCChhhHHHHHHHHHhhhhhcccccchhhhhhhhhcccCCCcccccccccccccCCCCCCccchh
Q 002667 85 I--GRNYRNLCQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRTYDSE 162 (895)
Q Consensus 85 i--hk~yrkLc~~L~d~dEWgQv~iL~lL~rY~r~~~~~~~ps~~f~~~~~~~~~~~e~~~~~~~~l~~q~~~~~~~~~~ 162 (895)
+ +..+..||++|..-+.=+|...+..|.......
T Consensus 526 V~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~-------------------------------------------- 561 (2102)
T PLN03200 526 VESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTA-------------------------------------------- 561 (2102)
T ss_pred HHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhcc--------------------------------------------
Confidence 3 345778888888877767777777776654210
Q ss_pred hhhhhhhhcccccccccccCCCcccccccccCccccCCCCChhHHHHHHhhhhhccCCChHHHHHHHHHHHh---cCCHH
Q 002667 163 LVNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWI---MSPKE 239 (895)
Q Consensus 163 ~~~~~~~~~~~~~d~~~~~s~~~~~~~~~~~~~~~~~~~~d~D~~lLL~~~~pLLqS~NsAVVlaaa~l~~~---lap~~ 239 (895)
|.+ .++.+..+|.+.++.+...+.+++-+ +....
T Consensus 562 ----------------------------------------d~~---~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~ 598 (2102)
T PLN03200 562 ----------------------------------------DAA---TISQLTALLLGDLPESKVHVLDVLGHVLSVASLE 598 (2102)
T ss_pred ----------------------------------------chh---HHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchh
Confidence 000 11233455777777666666665433 33322
Q ss_pred H-H------HHHHHHHHHHhcC-CCcchHHHHHHHHHHHHhCCcc---------cccccccceeccCCcHHHHHHHHHHH
Q 002667 240 D-V------KRIVKPLLFILRS-SGASKYVVLCNIQVFAKALPHL---------FVPHYEDFFVSSSDSYQSKALKLEIL 302 (895)
Q Consensus 240 ~-l------~~~~~pLv~LL~s-~~eiqyvvL~~I~~i~~~~p~l---------F~~~l~~Ffi~~sDp~~IK~lKLeIL 302 (895)
+ + ...+..|+.||.+ ++++|--+...|..++..+++. +.|-+.. ..+....+++.+---|
T Consensus 599 d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~L---Lss~~~~v~keAA~AL 675 (2102)
T PLN03200 599 DLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKL---LTNNTEAVATQSARAL 675 (2102)
T ss_pred HHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHH---HhcCChHHHHHHHHHH
Confidence 2 1 2367788999986 5678877887787777666542 2232222 2233345777787777
Q ss_pred Hhhc---CCCCHHHHHH-----HHHHhhccCChhHHHHHHHHHHHHHhhCcchH----HHHHHHHHHHHHhhhccccccC
Q 002667 303 SSIV---TESSISSVFK-----EFQDYIRDPDRRFAADTVAAIGLCARKLPKMA----NTCVEGLLALIRQELLTSDIES 370 (895)
Q Consensus 303 ~~La---ne~Nv~~IL~-----EL~~Yv~~~D~ef~~~aI~AIG~~A~~~p~~a----~~cl~~Ll~LLs~~~~~~~~~~ 370 (895)
.+|+ ++.|...+++ =|...+++.|.+++..+..+++.++..-.... ...+..|+++|+.
T Consensus 676 ~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~--------- 746 (2102)
T PLN03200 676 AALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLRE--------- 746 (2102)
T ss_pred HHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHh---------
Confidence 7777 4445444333 46777788899999999999999986543322 3457889999984
Q ss_pred CCCCCchhhhHHHHHHHHHhhCCcch--------HHHHHHHHHhhhccC-----chhhHHhhhhhhcc-cc-C-------
Q 002667 371 GNGEADVLIQSIISIKSIIKQDPSCH--------EKVIIQLFRSLDSIK-----VPEARVMIIWMVGE-YS-S------- 428 (895)
Q Consensus 371 ~~~~~~vv~E~V~vik~Llq~~P~~~--------~~ii~~L~~~ld~i~-----~p~ArAsIiWLLGE-Y~-~------- 428 (895)
|....-..+.-.|.+|.+..|..+ .-++..|+.+|.... ..+|.-++.|+.-- ++ +
T Consensus 747 --G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~ 824 (2102)
T PLN03200 747 --GTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDSSATSEALEALALLARTKGGANFSHPPWA 824 (2102)
T ss_pred --CChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcchhhHHHHHHHHHHHHhhcccCCCCCCchh
Confidence 222223335557778888877432 344667777776442 23455666677652 11 1
Q ss_pred -CCCCccchHHHHHHHHHHhhccCcHHHHHHHHHHHHHHhhhcC
Q 002667 429 -VGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAK 471 (895)
Q Consensus 429 -~~e~ip~ia~dvLr~l~k~F~~E~~~VKlqILtaaaKL~~~~p 471 (895)
.+| .|.. |..++.....+.+.++--.+-...+|+-..|
T Consensus 825 ~~~e-~p~~----l~~l~~~l~~~~p~~~~kai~il~~~~~~~~ 863 (2102)
T PLN03200 825 VLAE-VPSS----LEPLVRCLAEGHPLVQDKAIEILSRLCRDQP 863 (2102)
T ss_pred hHHh-ccCc----hHHHHHHHHcCChHHHHHHHHHHHHHhccCh
Confidence 111 2222 3344444456677777777777777765444
No 26
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.07 E-value=0.24 Score=59.27 Aligned_cols=411 Identities=16% Similarity=0.147 Sum_probs=232.1
Q ss_pred cchhhhHHHHHHHHhhcCCCCchhhHHHHHHHHHHhccCC---cchhHHHHHHHHHHhcCCChhHHHHHHHHHHH-----
Q 002667 5 RLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQ---EEITSAIEEIVGILLNDRSPGVVGAAAAAFAS----- 76 (895)
Q Consensus 5 Rv~~I~piv~~aIkk~l~D~SPYVRK~AA~AI~Kly~ld~---pd~~~~L~eil~~LL~D~~p~VvgsAv~Af~E----- 76 (895)
==.+++|++++-+|+.+......||-++++|+.-+-.=.- -...+.|+.++-.+|.|+-|.|-.-+--.+..
T Consensus 386 f~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv 465 (885)
T KOG2023|consen 386 FGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWV 465 (885)
T ss_pred hHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhH
Confidence 3367899999999999999999999999999887654210 11567899999999999999996544333322
Q ss_pred hCCCCccchHHHHHHHHHhCCCCChhhHHHHHHHHHhhhhhcccccchhhhhhhhhcccCCCcccccccccccccCCCCC
Q 002667 77 ICPNNFTLIGRNYRNLCQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPS 156 (895)
Q Consensus 77 IcP~r~dLihk~yrkLc~~L~d~dEWgQv~iL~lL~rY~r~~~~~~~ps~~f~~~~~~~~~~~e~~~~~~~~l~~q~~~~ 156 (895)
++..+-..+.+....|++.+.|-+-|-|-...-.++.+-. +.
T Consensus 466 ~~~~~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE------------------------~A-------------- 507 (885)
T KOG2023|consen 466 VQDSRDEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEE------------------------EA-------------- 507 (885)
T ss_pred hcCChHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH------------------------hc--------------
Confidence 2333545677777888888888999988877766554421 00
Q ss_pred CccchhhhhhhhhhcccccccccccCCCcccccccccCccccCCCCChhHHHHHHhhhh---hccCCChHHHHHHHHHHH
Q 002667 157 RTYDSELVNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSP---LLWSHNSAVVLAAAGVHW 233 (895)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~d~~~~~s~~~~~~~~~~~~~~~~~~~~d~D~~lLL~~~~p---LLqS~NsAVVlaaa~l~~ 233 (895)
.++ +=|-+.-+|+.+.- --|++|--+++-|+.++-
T Consensus 508 ---~~e---------------------------------------LVp~l~~IL~~l~~af~kYQ~KNLlILYDAIgtlA 545 (885)
T KOG2023|consen 508 ---GEE---------------------------------------LVPYLEYILDQLVFAFGKYQKKNLLILYDAIGTLA 545 (885)
T ss_pred ---cch---------------------------------------hHHHHHHHHHHHHHHHHHHhhcceehHHHHHHHHH
Confidence 011 11222233333322 236889889999988753
Q ss_pred -----hcCCHHHHHHHHHHHHH---HhcCCCcchHHHHHHHHHHHHhCCcccccccccceec---------------cCC
Q 002667 234 -----IMSPKEDVKRIVKPLLF---ILRSSGASKYVVLCNIQVFAKALPHLFVPHYEDFFVS---------------SSD 290 (895)
Q Consensus 234 -----~lap~~~l~~~~~pLv~---LL~s~~eiqyvvL~~I~~i~~~~p~lF~~~l~~Ffi~---------------~sD 290 (895)
++..+.+++.+..||+. +|+.+----|-.|.++..++..-..-|.||..-.|-| ..|
T Consensus 546 dsvg~~Ln~~~YiqiLmPPLi~KW~~lsd~DKdLfPLLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~t~q~~~~~~~~ 625 (885)
T KOG2023|consen 546 DSVGHALNKPAYIQILMPPLIEKWELLSDSDKDLFPLLECLSSIASALGVGFLPYAQPVYQRCFRILQKTLQLLAKVQQD 625 (885)
T ss_pred HHHHHhcCcHHHHHHhccHHHHHHHhcCcccchHHHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHhccCC
Confidence 66677889999999983 4544333346667778777766666666654322211 122
Q ss_pred cHH------HHHHHHHHHHhhcC--CCCHHH------HHHHHHHhhccCChhHHHHHHHHHHHHHhhCcchHHHHHHHHH
Q 002667 291 SYQ------SKALKLEILSSIVT--ESSISS------VFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLL 356 (895)
Q Consensus 291 p~~------IK~lKLeIL~~Lan--e~Nv~~------IL~EL~~Yv~~~D~ef~~~aI~AIG~~A~~~p~~a~~cl~~Ll 356 (895)
|++ .-...||++.-|+- .+.++. |++=|.....|.-.+++.-+..-+|.++...++-..-|+.-++
T Consensus 626 ~~~~~pdkdfiI~sLDL~SGLaegLg~~ie~Lva~snl~~lll~C~~D~~peVRQS~FALLGDltk~c~~~v~p~~~~fl 705 (885)
T KOG2023|consen 626 PTVEAPDKDFIIVSLDLLSGLAEGLGSHIEPLVAQSNLLDLLLQCLQDEVPEVRQSAFALLGDLTKACFEHVIPNLADFL 705 (885)
T ss_pred ccccCCCcceEEEeHHHHhHHHHHhhhchHHHhhhccHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHhccchHHHHH
Confidence 221 12234566655542 122222 3334455667777788888888899888765544444555555
Q ss_pred HHHHhhhccccccCCCCCC-chhhhHHHHHHHHH-hhCCcc---hHHHHHHHHHhhhccCchh----hHHhhhhhhcccc
Q 002667 357 ALIRQELLTSDIESGNGEA-DVLIQSIISIKSII-KQDPSC---HEKVIIQLFRSLDSIKVPE----ARVMIIWMVGEYS 427 (895)
Q Consensus 357 ~LLs~~~~~~~~~~~~~~~-~vv~E~V~vik~Ll-q~~P~~---~~~ii~~L~~~ld~i~~p~----ArAsIiWLLGEY~ 427 (895)
.+|-.+. +++. .++.-++=.|-.|- +..++- ...++..|...+..-..+. --|--|=-+|-+|
T Consensus 706 ~~lg~Nl--------~~~~isv~nNA~WAiGeia~k~g~~~~~~v~~vl~~L~~iin~~~~~~tllENtAITIGrLg~~~ 777 (885)
T KOG2023|consen 706 PILGANL--------NPENISVCNNAIWAIGEIALKMGLKMKQYVSPVLEDLITIINRQNTPKTLLENTAITIGRLGYIC 777 (885)
T ss_pred HHHhhcC--------ChhhchHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHhcccCchHHHHHhhhhhhhhhhccC
Confidence 5554321 1111 12333333343332 222222 2344555554444222221 1122233444444
Q ss_pred CCCCCccchHHHHHHHHHHhhccC-cHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHccCCChHHHhHHHHHHH
Q 002667 428 SVGVKIPRMLTTVLKYLAWCFKSE-AVETKLQILNTTIKVLLCAKGGDMWTITRLFSYLLELAECDLNYDVRDRARFFKK 506 (895)
Q Consensus 428 ~~~e~ip~ia~dvLr~l~k~F~~E-~~~VKlqILtaaaKL~~~~p~e~~~~l~~L~qyvL~la~~D~n~DVRDRAr~y~~ 506 (895)
.. +..|. .+.+.|.-..+..+- +.+.|-....-.+++.-.+|... +..+.-.+.-.|.+. |+. -|=.-++++
T Consensus 778 Pe-~vAp~-l~~f~~pWc~sl~~i~DneEK~sAFrG~c~mi~vNp~~v---v~~~~f~c~aiAsw~-np~-~~l~~~f~k 850 (885)
T KOG2023|consen 778 PE-EVAPH-LDSFMRPWCTSLRNIDDNEEKESAFRGLCNMINVNPSGV---VSSFIFICDAIASWS-NPE-DDLRDEFYK 850 (885)
T ss_pred HH-hcchh-HHHHHHHHHHHhcccccchhHHHHHHHHHHheeeCchhh---hhhhHHHHHHHhccc-ChH-HHHHHHHHH
Confidence 21 12232 344444333333322 34566666777777777788642 333333444455555 555 444456666
Q ss_pred HccC
Q 002667 507 LFSH 510 (895)
Q Consensus 507 LL~~ 510 (895)
+|.+
T Consensus 851 iL~g 854 (885)
T KOG2023|consen 851 ILQG 854 (885)
T ss_pred HHHH
Confidence 6654
No 27
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.06 E-value=0.61 Score=59.09 Aligned_cols=405 Identities=12% Similarity=0.121 Sum_probs=232.8
Q ss_pred cCCCCchhhHHHHHHHHHHhccCCcchhHHHHHHHHHHhcCCChhHHHHHHHHHHHhCCCCccchHHHHHHHHHh----C
Q 002667 21 ARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNNFTLIGRNYRNLCQI----L 96 (895)
Q Consensus 21 l~D~SPYVRK~AA~AI~Kly~ld~pd~~~~L~eil~~LL~D~~p~VvgsAv~Af~EIcP~r~dLihk~yrkLc~~----L 96 (895)
.+-+.|-|||.-|-.|+-+.+.+-|+.=++|...|-..+++.++.---+|+..|..+--..-.-..+|++-|.++ +
T Consensus 89 ~~E~~~~vr~k~~dviAeia~~~l~e~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~~l~~lf~q~~ 168 (1075)
T KOG2171|consen 89 QSETEPSVRHKLADVIAEIARNDLPEKWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLDDLLRLFSQTM 168 (1075)
T ss_pred HhccchHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHHHHHHHHHHhc
Confidence 456788999999999999999764666677888887888999999999999887765221111122344444444 4
Q ss_pred CCCChhhHHHHHHHHHhhhhhcccccchhhhhhhhhcccCCCcccccccccccccCCCCCCccchhhhhhhhhhcccccc
Q 002667 97 PDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRTYDSELVNLVSRSYIEGLG 176 (895)
Q Consensus 97 ~d~dEWgQv~iL~lL~rY~r~~~~~~~ps~~f~~~~~~~~~~~e~~~~~~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~d 176 (895)
.|.+-=-.+..++.+..|+... . + ++.. .+.+
T Consensus 169 ~d~s~~vr~~a~rA~~a~~~~~--------------~-------~------------------~~~~----~~~~----- 200 (1075)
T KOG2171|consen 169 TDPSSPVRVAAVRALGAFAEYL--------------E-------N------------------NKSE----VDKF----- 200 (1075)
T ss_pred cCCcchHHHHHHHHHHHHHHHh--------------c-------c------------------chHH----HHHH-----
Confidence 4433335555556666555310 0 0 0000 0000
Q ss_pred cccccCCCcccccccccCccccCCCCChhHHHHHHhhhhhccCCChHHHHHHHHHHHh---cCCH---HHHHHHHHHHHH
Q 002667 177 EYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWI---MSPK---EDVKRIVKPLLF 250 (895)
Q Consensus 177 ~~~~~s~~~~~~~~~~~~~~~~~~~~d~D~~lLL~~~~pLLqS~NsAVVlaaa~l~~~---lap~---~~l~~~~~pLv~ 250 (895)
-.=+--+|+.+.+.++..+..+.-.+..++.. ..|+ ..+..++.--+.
T Consensus 201 --------------------------~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~~ii~~~l~ 254 (1075)
T KOG2171|consen 201 --------------------------RDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLSQIIQFSLE 254 (1075)
T ss_pred --------------------------HHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Confidence 00011256666777777777444444444333 3332 233334433334
Q ss_pred HhcC---CCcchHHHHHHHHHHHHhCCccccc---cccccee------------------------ccCCcHHHHHHHHH
Q 002667 251 ILRS---SGASKYVVLCNIQVFAKALPHLFVP---HYEDFFV------------------------SSSDSYQSKALKLE 300 (895)
Q Consensus 251 LL~s---~~eiqyvvL~~I~~i~~~~p~lF~~---~l~~Ffi------------------------~~sDp~~IK~lKLe 300 (895)
+.++ ++.+|..+|..|..++...|.+... +....+. ..++|..+....||
T Consensus 255 Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lD 334 (1075)
T KOG2171|consen 255 IAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALD 334 (1075)
T ss_pred HhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHH
Confidence 4443 4678999999998887665533221 1111110 01225566666666
Q ss_pred HHHhhcC-CCCHHHHHHHHHHhhccCChhHHHHHHHHHHHHHhhCcchH----HHHHHHHHHHHHhhhccccccCCCCCC
Q 002667 301 ILSSIVT-ESSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMA----NTCVEGLLALIRQELLTSDIESGNGEA 375 (895)
Q Consensus 301 IL~~Lan-e~Nv~~IL~EL~~Yv~~~D~ef~~~aI~AIG~~A~~~p~~a----~~cl~~Ll~LLs~~~~~~~~~~~~~~~ 375 (895)
-|..=-. +.=+..++.-+..++.+.+-..+.++..||+.++.--++.. +.+++..+..|+. .+.
T Consensus 335 rlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~D-----------php 403 (1075)
T KOG2171|consen 335 RLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLND-----------PHP 403 (1075)
T ss_pred HHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCC-----------CCH
Confidence 6653323 34456788889999999999999999999999887655443 4555555555542 222
Q ss_pred chhhh-HHHHHHHHHhh-CCcc----hHHHHHHHHHhhhccCchhhHH---hhhhhhccccCCCCCccchHHHHHHH-HH
Q 002667 376 DVLIQ-SIISIKSIIKQ-DPSC----HEKVIIQLFRSLDSIKVPEARV---MIIWMVGEYSSVGVKIPRMLTTVLKY-LA 445 (895)
Q Consensus 376 ~vv~E-~V~vik~Llq~-~P~~----~~~ii~~L~~~ld~i~~p~ArA---sIiWLLGEY~~~~e~ip~ia~dvLr~-l~ 445 (895)
.|.. ++..|-++=.. .|+. |+.++..|+..+++-..+...+ +.+-=+.|.|..-...|| .+.++.+ +.
T Consensus 404 -rVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pY-Ld~lm~~~l~ 481 (1075)
T KOG2171|consen 404 -RVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPY-LDGLMEKKLL 481 (1075)
T ss_pred -HHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHH-HHHHHHHHHH
Confidence 3433 44555554322 2332 4455556677777655544322 223334466643222354 4666663 22
Q ss_pred HhhccCcHHHHHHHHHHHHHHhhhcCCCC---hHHHHHHHHHHHHHHccCCChHHHhHHHHHHHHccCCC
Q 002667 446 WCFKSEAVETKLQILNTTIKVLLCAKGGD---MWTITRLFSYLLELAECDLNYDVRDRARFFKKLFSHNL 512 (895)
Q Consensus 446 k~F~~E~~~VKlqILtaaaKL~~~~p~e~---~~~l~~L~qyvL~la~~D~n~DVRDRAr~y~~LL~~~~ 512 (895)
---......||-|++|+.+-+.......- .+++--++..+|..+..+....+|-..-+-..++...+
T Consensus 482 ~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AV 551 (1075)
T KOG2171|consen 482 LLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAV 551 (1075)
T ss_pred HHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHh
Confidence 22345678899999999988765443211 12344455567777665667888888878888876654
No 28
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.00 E-value=0.33 Score=61.36 Aligned_cols=256 Identities=17% Similarity=0.208 Sum_probs=149.6
Q ss_pred HHHHHHhhcCCCCchhhHHHHHHHHHHhccCC--cc-------hhHHHHHHHHHHhcCCChhHHHHHHHHHHHhCCCCcc
Q 002667 13 VLVAVGKCARDPSVFVRKCAANALPKLHELRQ--EE-------ITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNNFT 83 (895)
Q Consensus 13 v~~aIkk~l~D~SPYVRK~AA~AI~Kly~ld~--pd-------~~~~L~eil~~LL~D~~p~VvgsAv~Af~EIcP~r~d 83 (895)
+..-..+|+.|+|--||=+|+.|+.-+..... ++ ..+.++.++..++.+.+..++..++.+|.|+.-..-.
T Consensus 160 l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk 239 (1075)
T KOG2171|consen 160 LLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPK 239 (1075)
T ss_pred HHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchH
Confidence 34445689999998899999999888766530 22 2344666778888899999999999999999755555
Q ss_pred chHHHHHHHHHh---C---CCCChhhHHHHHHHHHhhhhhcccccchhhhhhhhhcccCCCcccccccccccccCCCCCC
Q 002667 84 LIGRNYRNLCQI---L---PDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSR 157 (895)
Q Consensus 84 Lihk~yrkLc~~---L---~d~dEWgQv~iL~lL~rY~r~~~~~~~ps~~f~~~~~~~~~~~e~~~~~~~~l~~q~~~~~ 157 (895)
++.+++-.++.. + +++++=..+.+|++|.-|.+.- |. +++-... +..+-
T Consensus 240 ~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~A-----p~-----~~k~~~~-----------~~~~l---- 294 (1075)
T KOG2171|consen 240 LLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYA-----PA-----MCKKLAL-----------LGHTL---- 294 (1075)
T ss_pred HHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhh-----HH-----Hhhhchh-----------hhccH----
Confidence 666665544433 2 4567766777888876554320 00 0100000 00000
Q ss_pred ccchhhhhhhhhhcccccccccccCCCcccccccccCccccCCCCChhHHHHHHhhhhhccCCCh-HHHHHHHHHHHhcC
Q 002667 158 TYDSELVNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNS-AVVLAAAGVHWIMS 236 (895)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~d~~~~~s~~~~~~~~~~~~~~~~~~~~d~D~~lLL~~~~pLLqS~Ns-AVVlaaa~l~~~la 236 (895)
.-.-..-|. -....+++.. + ...|.|. ...|+ +-.=+.-++-+++.
T Consensus 295 -v~~~l~~mt---e~~~D~ew~~--~----------------d~~ded~-----------~~~~~~~A~~~lDrlA~~L~ 341 (1075)
T KOG2171|consen 295 -VPVLLAMMT---EEEDDDEWSN--E----------------DDLDEDD-----------EETPYRAAEQALDRLALHLG 341 (1075)
T ss_pred -HHHHHHhcC---Ccccchhhcc--c----------------ccccccc-----------ccCcHHHHHHHHHHHHhcCC
Confidence 000000000 0000011110 0 0111211 01121 11222334556777
Q ss_pred CHHHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHHhCCcccccccccceeccCCcHHHHHHHHHHHHhhcCCCCHHHHH
Q 002667 237 PKEDVKRIVKPLLFILRS-SGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKLEILSSIVTESSISSVF 315 (895)
Q Consensus 237 p~~~l~~~~~pLv~LL~s-~~eiqyvvL~~I~~i~~~~p~lF~~~l~~Ffi~~sDp~~IK~lKLeIL~~Lane~Nv~~IL 315 (895)
|+..+..+...+-.+|.| +.--|..+|-.|..++.-.++...+ |+..|+
T Consensus 342 g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~------------------------------~l~~Il 391 (1075)
T KOG2171|consen 342 GKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIG------------------------------NLPKIL 391 (1075)
T ss_pred hhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHH------------------------------HHHHHH
Confidence 776666666667777776 4567888888888887766544333 345566
Q ss_pred HHHHHhhccCChhHHHHHHHHHHHHHhhCc-chHHHHHHHHH
Q 002667 316 KEFQDYIRDPDRRFAADTVAAIGLCARKLP-KMANTCVEGLL 356 (895)
Q Consensus 316 ~EL~~Yv~~~D~ef~~~aI~AIG~~A~~~p-~~a~~cl~~Ll 356 (895)
.-...++.|+++.++-+|..|||.++.-++ .+...+-..+.
T Consensus 392 ~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~ 433 (1075)
T KOG2171|consen 392 PIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLP 433 (1075)
T ss_pred HHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhcc
Confidence 666779999999999999999999999885 44445544444
No 29
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.92 E-value=0.046 Score=65.82 Aligned_cols=64 Identities=27% Similarity=0.262 Sum_probs=55.4
Q ss_pred HHHHHHHhhcCCCCchhhHHHHHHHHHHhccCCcchhHHHHHHHHHHhcCCChhHHHHHHHHHHHhC
Q 002667 12 LVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASIC 78 (895)
Q Consensus 12 iv~~aIkk~l~D~SPYVRK~AA~AI~Kly~ld~pd~~~~L~eil~~LL~D~~p~VvgsAv~Af~EIc 78 (895)
++-.+++|-+.|++-|||=...-=+.|+ ..||..+.|.+.+...|..+.+.|-.+|+.|+.+|.
T Consensus 99 Lvcna~RkDLQHPNEyiRG~TLRFLckL---kE~ELlepl~p~IracleHrhsYVRrNAilaifsIy 162 (948)
T KOG1058|consen 99 LVCNAYRKDLQHPNEYIRGSTLRFLCKL---KEPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIY 162 (948)
T ss_pred HHHHHHhhhccCchHhhcchhhhhhhhc---CcHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHH
Confidence 4567899999999999998877666655 438888899999999999999999999999988875
No 30
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=96.91 E-value=0.0027 Score=58.81 Aligned_cols=101 Identities=20% Similarity=0.059 Sum_probs=78.5
Q ss_pred HHHHHHhhcCCCCchhhHHHHHHHHHHhccCCcch-----hHHHHHHHHHHhcCCChhHHHHHHHHHHHhCCCC---ccc
Q 002667 13 VLVAVGKCARDPSVFVRKCAANALPKLHELRQEEI-----TSAIEEIVGILLNDRSPGVVGAAAAAFASICPNN---FTL 84 (895)
Q Consensus 13 v~~aIkk~l~D~SPYVRK~AA~AI~Kly~ld~pd~-----~~~L~eil~~LL~D~~p~VvgsAv~Af~EIcP~r---~dL 84 (895)
++..+.+.+.|.++++|+.|+.|+.++.... |+. ....++.+..+|+|+++.|..+|+.++..++-+. ...
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~-~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 86 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGN-NDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLI 86 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCC-HHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHH
Confidence 5666777888999999999999999998875 552 2245667778899999999999999999998543 222
Q ss_pred hHH--HHHHHHHhCCCCChhhHHHHHHHHHhh
Q 002667 85 IGR--NYRNLCQILPDVEEWGQILLIEILLRY 114 (895)
Q Consensus 85 ihk--~yrkLc~~L~d~dEWgQv~iL~lL~rY 114 (895)
+++ ....|.+.|.+.+.+-+-..+.+|...
T Consensus 87 ~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l 118 (120)
T cd00020 87 VLEAGGVPKLVNLLDSSNEDIQKNATGALSNL 118 (120)
T ss_pred HHHCCChHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 333 377888888888888888887777654
No 31
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.67 E-value=0.61 Score=55.11 Aligned_cols=289 Identities=18% Similarity=0.150 Sum_probs=174.4
Q ss_pred hHHHHHHHHhhcCCCCchhhHHHHHHHH---HHhccCCcchhHHHHHHHHHHhcCCChhHHHHHHH---HHHHhCCCCc-
Q 002667 10 SPLVLVAVGKCARDPSVFVRKCAANALP---KLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAA---AFASICPNNF- 82 (895)
Q Consensus 10 ~piv~~aIkk~l~D~SPYVRK~AA~AI~---Kly~ld~pd~~~~L~eil~~LL~D~~p~VvgsAv~---Af~EIcP~r~- 82 (895)
.+-++++|-.|..|..--||=-|+-++. |+++-...-..+.+.+.+.++-.|.+..|-++|=. .+.+|.-++-
T Consensus 82 ~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~aeLLdRLikdIVte~~~ 161 (675)
T KOG0212|consen 82 LEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGAELLDRLIKDIVTESAS 161 (675)
T ss_pred HHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccHHHHHHHHHHHhcccccc
Confidence 4456778889999999999998887754 44443322267788899999999999999988744 2445544332
Q ss_pred cchHHHH-HHHHHhCCCCChhhHHHHHHHHHhhhhhcccccchh-hhhhhhhcccCCCcccccccccccccCCCCCCccc
Q 002667 83 TLIGRNY-RNLCQILPDVEEWGQILLIEILLRYVVASHGLVKES-IMSSLLCIESSHSEKDVFDVNVALEDNGIPSRTYD 160 (895)
Q Consensus 83 dLihk~y-rkLc~~L~d~dEWgQv~iL~lL~rY~r~~~~~~~ps-~~f~~~~~~~~~~~e~~~~~~~~l~~q~~~~~~~~ 160 (895)
.+--..+ .=|-..+-..++...+.++.-|...-.. |. .|+ .+
T Consensus 162 tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~------P~~~m~-~y----------------------------- 205 (675)
T KOG0212|consen 162 TFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSV------PDLEMI-SY----------------------------- 205 (675)
T ss_pred ccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcC------CcHHHH-hc-----------------------------
Confidence 1211122 2222234556777777777766543211 11 011 00
Q ss_pred hhhhhhhhhhcccccccccccCCCcccccccccCccccCCCCChhHHHHHHhhhhhccCCChHHHHHHHHHHH----h--
Q 002667 161 SELVNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHW----I-- 234 (895)
Q Consensus 161 ~~~~~~~~~~~~~~~d~~~~~s~~~~~~~~~~~~~~~~~~~~d~D~~lLL~~~~pLLqS~NsAVVlaaa~l~~----~-- 234 (895)
+--|++-+...|.-.+..|---+-.+.. .
T Consensus 206 ---------------------------------------------l~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~ 240 (675)
T KOG0212|consen 206 ---------------------------------------------LPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIR 240 (675)
T ss_pred ---------------------------------------------chHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHh
Confidence 0012222222233333333211111110 1
Q ss_pred cCCHH-HHHHHHHHHHHHhc-CCCcchHHHHHHHHHHHHhCCcccccccccce-----eccCCcH-HHHHHHHH---HHH
Q 002667 235 MSPKE-DVKRIVKPLLFILR-SSGASKYVVLCNIQVFAKALPHLFVPHYEDFF-----VSSSDSY-QSKALKLE---ILS 303 (895)
Q Consensus 235 lap~~-~l~~~~~pLv~LL~-s~~eiqyvvL~~I~~i~~~~p~lF~~~l~~Ff-----i~~sDp~-~IK~lKLe---IL~ 303 (895)
-.|.. ...+.+..|+.-+. +.+++|-.+|..|..++...|..+-+++...+ |..+++. .||..+-. .|.
T Consensus 241 s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~ 320 (675)
T KOG0212|consen 241 SSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLL 320 (675)
T ss_pred cCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHH
Confidence 12323 45677788876665 57999999999999999999998888875433 3334443 56655543 456
Q ss_pred hhcCCCCH------HHHHHHHHHhhccCChhHHHHHHHHHHHHHhhCcc----hHHHHHHHHHHHHHhhhccccccCCCC
Q 002667 304 SIVTESSI------SSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPK----MANTCVEGLLALIRQELLTSDIESGNG 373 (895)
Q Consensus 304 ~Lane~Nv------~~IL~EL~~Yv~~~D~ef~~~aI~AIG~~A~~~p~----~a~~cl~~Ll~LLs~~~~~~~~~~~~~ 373 (895)
+++.+.-- ..|++=|+.|+.+...+-+.++..-|..+-.+.|. ..+....+|++-|+. .
T Consensus 321 ~l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd-----------~ 389 (675)
T KOG0212|consen 321 KLVSSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSD-----------R 389 (675)
T ss_pred HHHhhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcC-----------c
Confidence 66655433 38999999999998888888898888888888875 334556666666652 2
Q ss_pred CCchhhhHHHHHHHHHh
Q 002667 374 EADVLIQSIISIKSIIK 390 (895)
Q Consensus 374 ~~~vv~E~V~vik~Llq 390 (895)
.+.||-.++.++..|.+
T Consensus 390 sd~vvl~~L~lla~i~~ 406 (675)
T KOG0212|consen 390 SDEVVLLALSLLASICS 406 (675)
T ss_pred hhHHHHHHHHHHHHHhc
Confidence 33455556555555543
No 32
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=96.64 E-value=0.005 Score=54.66 Aligned_cols=84 Identities=30% Similarity=0.210 Sum_probs=61.3
Q ss_pred HHHHhhc-CCCCchhhHHHHHHHHHHhccCCcchhHHHHHHHHHHhcCCChhHHHHHHHHHHHhCCCCccchHHHHHHHH
Q 002667 15 VAVGKCA-RDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNNFTLIGRNYRNLC 93 (895)
Q Consensus 15 ~aIkk~l-~D~SPYVRK~AA~AI~Kly~ld~pd~~~~L~eil~~LL~D~~p~VvgsAv~Af~EIcP~r~dLihk~yrkLc 93 (895)
+++.+.+ +|++|+||..|+.++.++ . .+..++.|..+|+|.++.|..+|+.++..+- -......|+
T Consensus 2 ~~L~~~l~~~~~~~vr~~a~~~L~~~---~----~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~------~~~~~~~L~ 68 (88)
T PF13646_consen 2 PALLQLLQNDPDPQVRAEAARALGEL---G----DPEAIPALIELLKDEDPMVRRAAARALGRIG------DPEAIPALI 68 (88)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHCC---T----HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH------HHHTHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHc---C----CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC------CHHHHHHHH
Confidence 3455555 899999999999999944 2 2346667777889999999999999999873 234567788
Q ss_pred HhCCCCChhh-HHHHHHHH
Q 002667 94 QILPDVEEWG-QILLIEIL 111 (895)
Q Consensus 94 ~~L~d~dEWg-Qv~iL~lL 111 (895)
+.+.+-+.|. +-..+..|
T Consensus 69 ~~l~~~~~~~vr~~a~~aL 87 (88)
T PF13646_consen 69 KLLQDDDDEVVREAAAEAL 87 (88)
T ss_dssp HHHTC-SSHHHHHHHHHHH
T ss_pred HHHcCCCcHHHHHHHHhhc
Confidence 8887766665 45454443
No 33
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=96.60 E-value=0.034 Score=57.08 Aligned_cols=104 Identities=13% Similarity=0.212 Sum_probs=85.3
Q ss_pred CcchHHHHHHHHHHHHhCCcccccccccceeccCCc-HHHHHHHHHHHHhhcCCCCH---HHHHHHHHHhhccCChhHHH
Q 002667 256 GASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDS-YQSKALKLEILSSIVTESSI---SSVFKEFQDYIRDPDRRFAA 331 (895)
Q Consensus 256 ~eiqyvvL~~I~~i~~~~p~lF~~~l~~Ffi~~sDp-~~IK~lKLeIL~~Lane~Nv---~~IL~EL~~Yv~~~D~ef~~ 331 (895)
|.+|--++-.+.-|+.++|+++.+|...+|-+..|+ ..||+..|-+|+.|..++-+ ..++.++...+.|.|.+++.
T Consensus 2 ~~vR~n~i~~l~DL~~r~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~D~~~~Ir~ 81 (178)
T PF12717_consen 2 PSVRNNAIIALGDLCIRYPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLVDENPEIRS 81 (178)
T ss_pred HHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHcCCCHHHHH
Confidence 567778888889999999999999999998777775 78999999999999988765 36668888888999999999
Q ss_pred HHHHHHHHHHhh-CcchHHHHHHHHHHHH
Q 002667 332 DTVAAIGLCARK-LPKMANTCVEGLLALI 359 (895)
Q Consensus 332 ~aI~AIG~~A~~-~p~~a~~cl~~Ll~LL 359 (895)
.|...+..++.+ .|.....++--++.-|
T Consensus 82 ~A~~~~~e~~~~~~~~~i~~~~~e~i~~l 110 (178)
T PF12717_consen 82 LARSFFSELLKKRNPNIIYNNFPELISSL 110 (178)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 999999999988 6665544444333333
No 34
>PF14764 SPG48: AP-5 complex subunit, vesicle trafficking
Probab=96.59 E-value=0.065 Score=62.35 Aligned_cols=125 Identities=16% Similarity=0.165 Sum_probs=73.0
Q ss_pred HHHHHhhCCcchHHHHHHHHHhhhccCchh----hHHhhhhhhccccCCCCCccchHHHHHHHHHHh---h-------c-
Q 002667 385 IKSIIKQDPSCHEKVIIQLFRSLDSIKVPE----ARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWC---F-------K- 449 (895)
Q Consensus 385 ik~Llq~~P~~~~~ii~~L~~~ld~i~~p~----ArAsIiWLLGEY~~~~e~ip~ia~dvLr~l~k~---F-------~- 449 (895)
+-.+.+++|......-..|.+.+.+...-. --..++|+||||+...-. ..+-.++++.+.+. + .
T Consensus 292 ll~lfk~~PsLvv~l~~~ilef~g~~~~~~~k~~l~~hlvWaIGEy~s~~~d-~rct~~~i~~~fE~LE~llyE~~~~~~ 370 (459)
T PF14764_consen 292 LLALFKRHPSLVVELSKEILEFLGSASNIHSKEELFTHLVWAIGEYLSVSYD-RRCTVEQINEFFEALEALLYEVTQSRR 370 (459)
T ss_pred HHHHHHhCcHHHHHhHHHHHHHhcccccccchhHHHHHHHHHHhcccccccC-CccCHHHHHHHHHHHHHHHHHHhhccc
Confidence 455667888765544455555555443323 334568999999864221 22223333333221 1 1
Q ss_pred -------cCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHc-------cC--CChHHHhHHHHHHHHccCC
Q 002667 450 -------SEAVETKLQILNTTIKVLLCAKGGDMWTITRLFSYLLELAE-------CD--LNYDVRDRARFFKKLFSHN 511 (895)
Q Consensus 450 -------~E~~~VKlqILtaaaKL~~~~p~e~~~~l~~L~qyvL~la~-------~D--~n~DVRDRAr~y~~LL~~~ 511 (895)
.....+-.-++|+.+||..+.++-. +++...+..+-.++. ++ .+..|..||.+|.+||+..
T Consensus 371 ~~~~~~~~~~~rl~~~lmt~laKLAsr~~dl~-pRv~l~LsK~~~~~~s~~~~~~~~~~~~~~v~~RA~el~~LLk~P 447 (459)
T PF14764_consen 371 DPSASRPSSQPRLMTVLMTALAKLASRSQDLI-PRVSLCLSKMRTLVQSPAVSSVYSEEDDEAVLTRATELLNLLKMP 447 (459)
T ss_pred cccccCCCCchhHHHHHHHHHHHHHHhCHhhh-HHHHHHHHHHHHhccCCccccccCcccHHHHHHHHHHHHHHhcCc
Confidence 2334566779999999999887533 244444433332111 34 3789999999999999863
No 35
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=96.41 E-value=1 Score=55.76 Aligned_cols=278 Identities=16% Similarity=0.065 Sum_probs=147.4
Q ss_pred HHHHHHHhhcCCCCchhhHHHHHHHHHHhccCCcchhHHHHHHHHHHhcCCChhHHHHHHHHHHHhCCCCccchHHH-H-
Q 002667 12 LVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNNFTLIGRN-Y- 89 (895)
Q Consensus 12 iv~~aIkk~l~D~SPYVRK~AA~AI~Kly~ld~pd~~~~L~eil~~LL~D~~p~VvgsAv~Af~EIcP~r~dLihk~-y- 89 (895)
+.+..++|-+.|++||+|-+|.-.+.++ -. ++-.+.++.-|.++|.|+++.|-.+|+.|+..+..-.-++.|.. .
T Consensus 92 LavNti~kDl~d~N~~iR~~AlR~ls~l--~~-~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l~~~~g~~ 168 (757)
T COG5096 92 LAVNTIQKDLQDPNEEIRGFALRTLSLL--RV-KELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDLYHELGLI 168 (757)
T ss_pred HHHHHHHhhccCCCHHHHHHHHHHHHhc--Ch-HHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhhhhcccHH
Confidence 4567889999999999999999988876 23 66778899999999999999999999999988864333444433 2
Q ss_pred HHHHHhCCCCChhhHHHHHHHHHhhhhhcccccchhhhhhhhhcccCCCcccccccccccccCCCCCCccchhhhhhhhh
Q 002667 90 RNLCQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRTYDSELVNLVSR 169 (895)
Q Consensus 90 rkLc~~L~d~dEWgQv~iL~lL~rY~r~~~~~~~ps~~f~~~~~~~~~~~e~~~~~~~~l~~q~~~~~~~~~~~~~~~~~ 169 (895)
..+-.++.|-|+=--...+..|.--.+.. ..-|.... ++
T Consensus 169 ~~l~~l~~D~dP~Vi~nAl~sl~~i~~e~------a~~~~~~~-----------------------------------~~ 207 (757)
T COG5096 169 DILKELVADSDPIVIANALASLAEIDPEL------AHGYSLEV-----------------------------------IL 207 (757)
T ss_pred HHHHHHhhCCCchHHHHHHHHHHHhchhh------hhhHHHHH-----------------------------------HH
Confidence 23333444666644333333333222110 00000000 00
Q ss_pred hcccccccccccCCCcccccccccCccccCCCCChhHHHHH-HhhhhhccCCChHHHHHHHH-HHHhcCCHHHHHHHHHH
Q 002667 170 SYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLL-QCTSPLLWSHNSAVVLAAAG-VHWIMSPKEDVKRIVKP 247 (895)
Q Consensus 170 ~~~~~~d~~~~~s~~~~~~~~~~~~~~~~~~~~d~D~~lLL-~~~~pLLqS~NsAVVlaaa~-l~~~lap~~~l~~~~~p 247 (895)
. +...+-. ++.. ....-...++ ..+.+.....++++.+...- ++........+..+++.
T Consensus 208 ~-i~~l~~~---~~~~---------------~~~~~~~~~le~L~~~~~~~~~s~~~~~~~~~~~~~~~n~~vl~~av~~ 268 (757)
T COG5096 208 R-IPQLDLL---SLSV---------------STEWLLLIILEVLTERVPTTPDSAEDFEERLSPPLQHNNAEVLLIAVKV 268 (757)
T ss_pred H-hhhccch---hhhh---------------hHHHHHHHHHHHHHccCCCCCCcHHHHHHhccchhhhCcHHHHHHHHHH
Confidence 0 0000000 0000 0000011122 22334555566777665544 34444456678888999
Q ss_pred HHHHhc--CCCcchHHHHHHHHHHHHhCCcccccccccceeccCCc--HHHHHHHHHHHHhhcCCCCHHHHHHHHH----
Q 002667 248 LLFILR--SSGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDS--YQSKALKLEILSSIVTESSISSVFKEFQ---- 319 (895)
Q Consensus 248 Lv~LL~--s~~eiqyvvL~~I~~i~~~~p~lF~~~l~~Ffi~~sDp--~~IK~lKLeIL~~Lane~Nv~~IL~EL~---- 319 (895)
+++|+. ...+..-....-+..+.. +| +.+...+.+.+.+ .+..-+-+++...+..-.+...|...|.
T Consensus 269 i~~l~~~~~~~~~~~~~~~~l~~Ll~-~~----~~~~~~vl~~~~~~~l~~~~k~~~~~~~~f~~~~~~~i~~~lek~~~ 343 (757)
T COG5096 269 ILRLLVFLPSNNLFLISSPPLVTLLA-KP----ESLIQYVLRRNIQIDLEVCSKLLDKVKKLFLIEYNDDIYIKLEKLDQ 343 (757)
T ss_pred HHHHhhhhccccHHHhhccHHHHHHc-CC----HHHHHHHHHHhhHHHHHhhHHHHHHHhhhhhhhccchHHHHHHHHHH
Confidence 988875 234433334444444443 33 1222222233333 3455566677777766666555544332
Q ss_pred HhhccCChhHHHHHHHHHHHHHhhCcchHHHHHHHHHHHH
Q 002667 320 DYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALI 359 (895)
Q Consensus 320 ~Yv~~~D~ef~~~aI~AIG~~A~~~p~~a~~cl~~Ll~LL 359 (895)
.+..-.+..+.+....++..++.. ......++-.++.|
T Consensus 344 ~t~l~~~~n~~~~L~e~~~y~~~~--~~~~e~v~~~ik~l 381 (757)
T COG5096 344 LTRLADDQNLSQILLELIYYIAEN--HIDAEMVSEAIKAL 381 (757)
T ss_pred HhhcCCchhhHHHHHHHHHHHhhc--cccHHHHHHHHHHH
Confidence 232333445666777888777774 23333344444444
No 36
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=96.24 E-value=0.36 Score=59.77 Aligned_cols=123 Identities=16% Similarity=0.251 Sum_probs=89.0
Q ss_pred hhHHHHHHHHHhhCCcchHHHHHHHHHhhhccCchhhHHhhhhhhccccCCCCCccchHHHHHHHHHHhhccCcHHHHHH
Q 002667 379 IQSIISIKSIIKQDPSCHEKVIIQLFRSLDSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQ 458 (895)
Q Consensus 379 ~E~V~vik~Llq~~P~~~~~ii~~L~~~ld~i~~p~ArAsIiWLLGEY~~~~e~ip~ia~dvLr~l~k~F~~E~~~VKlq 458 (895)
+++++.+-++.-.+.....+.+..|++-|+..+....|..|+-.+|.+|... .-+..-++-.++.+..+-...||-|
T Consensus 949 a~~vvTlakmcLah~~LaKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~Y---Tam~d~YiP~I~~~L~Dp~~iVRrq 1025 (1529)
T KOG0413|consen 949 AVGVVTLAKMCLAHDRLAKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSY---TAMTDRYIPMIAASLCDPSVIVRRQ 1025 (1529)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHH---HHHHHHhhHHHHHHhcCchHHHHHH
Confidence 4456667777767777777788888888888888889999999999998421 0133444555677788889999999
Q ss_pred HHHHHHHHhhhcCCCChHHHHHHHHHHHHHHccCCChHHHhHHHHHHHHc
Q 002667 459 ILNTTIKVLLCAKGGDMWTITRLFSYLLELAECDLNYDVRDRARFFKKLF 508 (895)
Q Consensus 459 ILtaaaKL~~~~p~e~~~~l~~L~qyvL~la~~D~n~DVRDRAr~y~~LL 508 (895)
.+.+.++|.-+.- -...=..++.+++.+ -|.+.|||.=|-||..=+
T Consensus 1026 t~ilL~rLLq~~~--vKw~G~Lf~Rf~l~l--~D~~edIr~~a~f~~~~v 1071 (1529)
T KOG0413|consen 1026 TIILLARLLQFGI--VKWNGELFIRFMLAL--LDANEDIRNDAKFYISEV 1071 (1529)
T ss_pred HHHHHHHHHhhhh--hhcchhhHHHHHHHH--cccCHHHHHHHHHHHHHH
Confidence 9999999965431 000112466666655 899999999999997644
No 37
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=96.06 E-value=0.0067 Score=44.33 Aligned_cols=29 Identities=34% Similarity=0.374 Sum_probs=25.0
Q ss_pred HHHHHHhhcCCCCchhhHHHHHHHHHHhc
Q 002667 13 VLVAVGKCARDPSVFVRKCAANALPKLHE 41 (895)
Q Consensus 13 v~~aIkk~l~D~SPYVRK~AA~AI~Kly~ 41 (895)
+++.+.+++.|++|-||++|+.|+.++.+
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 46778899999999999999999999865
No 38
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.04 E-value=1.1 Score=54.07 Aligned_cols=125 Identities=18% Similarity=0.218 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHHhhCcchHHHHHHHHHHHHHhhhccccccCCCCCCchhhhH-HHHHHHHHhh-----CCcchHHHHHH
Q 002667 329 FAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADVLIQS-IISIKSIIKQ-----DPSCHEKVIIQ 402 (895)
Q Consensus 329 f~~~aI~AIG~~A~~~p~~a~~cl~~Ll~LLs~~~~~~~~~~~~~~~~vv~E~-V~vik~Llq~-----~P~~~~~ii~~ 402 (895)
+++-+..||+.+|.-++ +.++..++.+|+.. +..+++++.|+ |.++-.|-.- +|.. ..+|..
T Consensus 371 LRkCSAAaLDVLanvf~---~elL~~l~PlLk~~--------L~~~~W~vrEagvLAlGAIAEGcM~g~~p~L-peLip~ 438 (885)
T KOG2023|consen 371 LRKCSAAALDVLANVFG---DELLPILLPLLKEH--------LSSEEWKVREAGVLALGAIAEGCMQGFVPHL-PELIPF 438 (885)
T ss_pred HhhccHHHHHHHHHhhH---HHHHHHHHHHHHHH--------cCcchhhhhhhhHHHHHHHHHHHhhhcccch-HHHHHH
Confidence 56677788888887654 47888899988852 23466788884 4566665442 3332 356777
Q ss_pred HHHhhhccCchhhHHhhhhhhccccCCCC--CccchHHHHHHHHHHhhccCcHHHHHHHHHHHHHH
Q 002667 403 LFRSLDSIKVPEARVMIIWMVGEYSSVGV--KIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKV 466 (895)
Q Consensus 403 L~~~ld~i~~p~ArAsIiWLLGEY~~~~e--~ip~ia~dvLr~l~k~F~~E~~~VKlqILtaaaKL 466 (895)
|..++++- -|-.|.--.|-++.|+..+- .-......+|.-+.++..+-..-|+-+...+.|-+
T Consensus 439 l~~~L~DK-kplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtl 503 (885)
T KOG2023|consen 439 LLSLLDDK-KPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRLLDSNKKVQEAACSAFATL 503 (885)
T ss_pred HHHHhccC-ccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 77777653 36677777899999986321 11112334444444455555566666666665544
No 39
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.99 E-value=0.35 Score=57.98 Aligned_cols=88 Identities=20% Similarity=0.188 Sum_probs=68.4
Q ss_pred hHHHHHHHHhhcCCCCchhhHHHHHHHHHHhccCCcchhHHHHHHHHHHhcCCChhHHHHHHHHH---HHhCC-------
Q 002667 10 SPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAF---ASICP------- 79 (895)
Q Consensus 10 ~piv~~aIkk~l~D~SPYVRK~AA~AI~Kly~ld~pd~~~~L~eil~~LL~D~~p~VvgsAv~Af---~EIcP------- 79 (895)
-..+...+-....|..+-||+.|+.|+..+..-- .....+.....++++|.+-.|-.+|+.+. -..||
T Consensus 196 ~~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~--kL~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~ 273 (823)
T KOG2259|consen 196 REHAARGLIYLEHDQDFRVRTHAVEGLLALSEGF--KLSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERES 273 (823)
T ss_pred HHHHHHHHHHHhcCCCcchHHHHHHHHHhhcccc--cccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchh
Confidence 3455666788899999999999999999887632 22234666777899999999999997764 46674
Q ss_pred CCccchHHHHHHHHHhCCCC
Q 002667 80 NNFTLIGRNYRNLCQILPDV 99 (895)
Q Consensus 80 ~r~dLihk~yrkLc~~L~d~ 99 (895)
++..+.-..|.++|+.+.|.
T Consensus 274 ~e~kl~D~aF~~vC~~v~D~ 293 (823)
T KOG2259|consen 274 EEEKLKDAAFSSVCRAVRDR 293 (823)
T ss_pred hhhhhHHHHHHHHHHHHhcC
Confidence 34677888999999999884
No 40
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=95.80 E-value=0.37 Score=59.74 Aligned_cols=174 Identities=12% Similarity=0.181 Sum_probs=107.8
Q ss_pred HHHHHHHHHHhhccCC--hhHHHHHHHHHHHHHhhC----cchHHHHHHHHHHHHHhhhccccccCCCCCCchhhhHHHH
Q 002667 311 ISSVFKEFQDYIRDPD--RRFAADTVAAIGLCARKL----PKMANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIIS 384 (895)
Q Consensus 311 v~~IL~EL~~Yv~~~D--~ef~~~aI~AIG~~A~~~----p~~a~~cl~~Ll~LLs~~~~~~~~~~~~~~~~vv~E~V~v 384 (895)
+..|+..|..|+.-.. ..+..+...-++..-.|+ |......+..++.-|.. . ...+..-+|..
T Consensus 129 ~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~fh~~il~~l~~ql~s----------~-R~aVrKkai~~ 197 (1233)
T KOG1824|consen 129 CKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLPNFHLSILKCLLPQLQS----------P-RLAVRKKAITA 197 (1233)
T ss_pred HHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCcchHHHHHHHHhhcccC----------h-HHHHHHHHHHH
Confidence 3566777777775422 224445555555554444 55555666666655543 1 12344446666
Q ss_pred HHHHHhh-CCcchHHHHHHHHHhhhccCchhhHHhhhhhhccccC-----CCCCccchHHHHHHHHHHhhccCcHHHHHH
Q 002667 385 IKSIIKQ-DPSCHEKVIIQLFRSLDSIKVPEARVMIIWMVGEYSS-----VGVKIPRMLTTVLKYLAWCFKSEAVETKLQ 458 (895)
Q Consensus 385 ik~Llq~-~P~~~~~ii~~L~~~ld~i~~p~ArAsIiWLLGEY~~-----~~e~ip~ia~dvLr~l~k~F~~E~~~VKlq 458 (895)
|-.+.-. +.+.+.+++.+|.+-|..-..+.+....|-++|+-|. .+.+.+.+.|-+..+.. ....++++.|-.
T Consensus 198 l~~la~~~~~~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~-~~e~~dDELrE~ 276 (1233)
T KOG1824|consen 198 LGHLASSCNRDLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFGSHLDKIVPLVADYCN-KIEEDDDELREY 276 (1233)
T ss_pred HHHHHHhcCHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhhcccchhhHHHHHHhc-ccccCcHHHHHH
Confidence 6666544 4456888899998888766666666666777776542 22346666776666553 235567899999
Q ss_pred HHHHHHHHhhhcCCCChHHHHHHHHHHHHHHccCCChH
Q 002667 459 ILNTTIKVLLCAKGGDMWTITRLFSYLLELAECDLNYD 496 (895)
Q Consensus 459 ILtaaaKL~~~~p~e~~~~l~~L~qyvL~la~~D~n~D 496 (895)
.|.++--+..++|.+..+....+.+-+++.-.||.||.
T Consensus 277 ~lQale~fl~rcp~ei~p~~pei~~l~l~yisYDPNy~ 314 (1233)
T KOG1824|consen 277 CLQALESFLRRCPKEILPHVPEIINLCLSYISYDPNYN 314 (1233)
T ss_pred HHHHHHHHHHhChhhhcccchHHHHHHHHHhccCCCCC
Confidence 99999888889987654444445555555557998653
No 41
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=95.76 E-value=0.22 Score=59.38 Aligned_cols=199 Identities=15% Similarity=0.156 Sum_probs=122.6
Q ss_pred cchHHHHHHHHHHHHhCC--cccccccccceeccCCcHHHHHHHHHHHHhhcCCCCHHH----HHHHHHHhhccCChhHH
Q 002667 257 ASKYVVLCNIQVFAKALP--HLFVPHYEDFFVSSSDSYQSKALKLEILSSIVTESSISS----VFKEFQDYIRDPDRRFA 330 (895)
Q Consensus 257 eiqyvvL~~I~~i~~~~p--~lF~~~l~~Ffi~~sDp~~IK~lKLeIL~~Lane~Nv~~----IL~EL~~Yv~~~D~ef~ 330 (895)
.-++-.|..+..-....+ +.|...+ .|-|..+.....-....+||..+........ +...|+.-+.+.++.++
T Consensus 16 ~~~~~~L~~l~~~~~~~~~l~~~~~~~-lf~~L~~~~~e~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~Vr 94 (503)
T PF10508_consen 16 AERLEALPELKTELSSSPFLERLPEPV-LFDCLNTSNREQVELICDILKRLLSALSPDSLLPQYQPFLQRGLTHPSPKVR 94 (503)
T ss_pred cchHHHHHHHHHHHhhhhHHHhchHHH-HHHHHhhcChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 445555555555444433 2222222 3444443323333556677777766655544 55556666678888999
Q ss_pred HHHHHHHHHHHhhCcchHH-----HHHHHHHHHHHhhhccccccCCCCCCchhhhHHHHHHHHHhhCCcchHHH-----H
Q 002667 331 ADTVAAIGLCARKLPKMAN-----TCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQDPSCHEKV-----I 400 (895)
Q Consensus 331 ~~aI~AIG~~A~~~p~~a~-----~cl~~Ll~LLs~~~~~~~~~~~~~~~~vv~E~V~vik~Llq~~P~~~~~i-----i 400 (895)
+.++++|++++..-..... .++..++.+|.. .+..|...++..|+.|... +.....+ +
T Consensus 95 ~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~-----------~d~~Va~~A~~~L~~l~~~-~~~~~~l~~~~~~ 162 (503)
T PF10508_consen 95 RLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRD-----------PDLSVAKAAIKALKKLASH-PEGLEQLFDSNLL 162 (503)
T ss_pred HHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcC-----------CcHHHHHHHHHHHHHHhCC-chhHHHHhCcchH
Confidence 9999999999876544333 456667777652 3444556677788888754 3333333 4
Q ss_pred HHHHHhhhccCchhhHHhhhhhhccccCCCCCccchHHH--HHHHHHHhhccCcHHHHHHHHHHHHHHhhh
Q 002667 401 IQLFRSLDSIKVPEARVMIIWMVGEYSSVGVKIPRMLTT--VLKYLAWCFKSEAVETKLQILNTTIKVLLC 469 (895)
Q Consensus 401 ~~L~~~ld~i~~p~ArAsIiWLLGEY~~~~e~ip~ia~d--vLr~l~k~F~~E~~~VKlqILtaaaKL~~~ 469 (895)
.+|...+.. ..+..|..+.+++.+-+...+.....+.+ ++..+.+.+.+++..||+-.+.+...|...
T Consensus 163 ~~L~~l~~~-~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~ 232 (503)
T PF10508_consen 163 SKLKSLMSQ-SSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAET 232 (503)
T ss_pred HHHHHHHhc-cCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcC
Confidence 555555543 24567888888888876533222222333 677888888888889999999999998763
No 42
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=95.64 E-value=1.5 Score=54.23 Aligned_cols=286 Identities=19% Similarity=0.236 Sum_probs=158.7
Q ss_pred hhhHHHHHHHHhhcCCCCchhhHHHHHHHHHHhccCCcch-----hHHHHHHHHHHhcCCChhHHHHHHHHHHHhCCCC-
Q 002667 8 VISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEI-----TSAIEEIVGILLNDRSPGVVGAAAAAFASICPNN- 81 (895)
Q Consensus 8 ~I~piv~~aIkk~l~D~SPYVRK~AA~AI~Kly~ld~pd~-----~~~L~eil~~LL~D~~p~VvgsAv~Af~EIcP~r- 81 (895)
.|+++++ +++...+.-+.=.|+-.+-||-- . ++. ...+++.|-+||.-.+..++-.|+.++..+.=+.
T Consensus 290 ~iV~~Lv----~~Ldr~n~ellil~v~fLkkLSi-~-~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~ 363 (708)
T PF05804_consen 290 GIVSLLV----KCLDRENEELLILAVTFLKKLSI-F-KENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPE 363 (708)
T ss_pred CCHHHHH----HHHcCCCHHHHHHHHHHHHHHcC-C-HHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHH
Confidence 4455544 55555566666666666666533 2 332 2236667778887777888899999999886432
Q ss_pred --ccchH-HHHHHHHHhCCCCChhhHHHHHHHHHhhhhhcccccchhhhhhhhhcccCCCcccccccccccccCCCCCCc
Q 002667 82 --FTLIG-RNYRNLCQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRT 158 (895)
Q Consensus 82 --~dLih-k~yrkLc~~L~d~dEWgQv~iL~lL~rY~r~~~~~~~ps~~f~~~~~~~~~~~e~~~~~~~~l~~q~~~~~~ 158 (895)
-.++. +.+.+|+.+|.+ +.+.+ +++.+|...+.... -..||..
T Consensus 364 ~R~~mV~~GlIPkLv~LL~d-~~~~~-val~iLy~LS~dd~----~r~~f~~---------------------------- 409 (708)
T PF05804_consen 364 LRSQMVSLGLIPKLVELLKD-PNFRE-VALKILYNLSMDDE----ARSMFAY---------------------------- 409 (708)
T ss_pred HHHHHHHCCCcHHHHHHhCC-CchHH-HHHHHHHHhccCHh----hHHHHhh----------------------------
Confidence 22221 245688888875 44544 46777766653210 0011110
Q ss_pred cchhhhhhhhhhcccccccccccCCCcccccccccCccccCCCCChhHHHHHHhhhhhccCCChHHHHHHHHHHHhcCC-
Q 002667 159 YDSELVNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSP- 237 (895)
Q Consensus 159 ~~~~~~~~~~~~~~~~~d~~~~~s~~~~~~~~~~~~~~~~~~~~d~D~~lLL~~~~pLLqS~NsAVVlaaa~l~~~lap- 237 (895)
++ =+..+++. ++.+.+..|-.+++.+.+.++.
T Consensus 410 Td--------------------------------------------cIp~L~~~---Ll~~~~~~v~~eliaL~iNLa~~ 442 (708)
T PF05804_consen 410 TD--------------------------------------------CIPQLMQM---LLENSEEEVQLELIALLINLALN 442 (708)
T ss_pred cc--------------------------------------------hHHHHHHH---HHhCCCccccHHHHHHHHHHhcC
Confidence 00 01112221 2333444444444444444442
Q ss_pred -HHH--HH--HHHHHHHHH-hcCCCcchHHHHHHHHHHHHhCC---cccccccccce--eccCCcHHHHHHHHHHHHhhc
Q 002667 238 -KED--VK--RIVKPLLFI-LRSSGASKYVVLCNIQVFAKALP---HLFVPHYEDFF--VSSSDSYQSKALKLEILSSIV 306 (895)
Q Consensus 238 -~~~--l~--~~~~pLv~L-L~s~~eiqyvvL~~I~~i~~~~p---~lF~~~l~~Ff--i~~sDp~~IK~lKLeIL~~La 306 (895)
+.. +- .-.+.|+.. ++.. --+.+..|.-|++..+ .+|.+|+..+- +...|.......-|=+|.+|+
T Consensus 443 ~rnaqlm~~g~gL~~L~~ra~~~~---D~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~ 519 (708)
T PF05804_consen 443 KRNAQLMCEGNGLQSLMKRALKTR---DPLLLKLIRNISQHDGPLKELFVDFIGDLAKIVSSGDSEEFVVECLGILANLT 519 (708)
T ss_pred HHHHHHHHhcCcHHHHHHHHHhcc---cHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcc
Confidence 111 10 112333322 2221 1234444445554442 36777765442 445566666666677777776
Q ss_pred CC-CCHHHHHHH--HHHhhc------cCChhHHHHHHHHHHHHHhhCcchHH-----HHHHHHHHHHHhhhccccccCCC
Q 002667 307 TE-SSISSVFKE--FQDYIR------DPDRRFAADTVAAIGLCARKLPKMAN-----TCVEGLLALIRQELLTSDIESGN 372 (895)
Q Consensus 307 ne-~Nv~~IL~E--L~~Yv~------~~D~ef~~~aI~AIG~~A~~~p~~a~-----~cl~~Ll~LLs~~~~~~~~~~~~ 372 (895)
.+ -++..++++ |..|+. ..++++.-++|..+|.+|. .+..+. .++..|+.||+.. .
T Consensus 520 ~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~-d~~~A~lL~~sgli~~Li~LL~~k---------q 589 (708)
T PF05804_consen 520 IPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLAS-DPECAPLLAKSGLIPTLIELLNAK---------Q 589 (708)
T ss_pred cCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHC-CHHHHHHHHhCChHHHHHHHHHhh---------C
Confidence 43 378888886 455554 2456899999999999884 555554 4588899998742 1
Q ss_pred CCCchhhhHHHHHHHHHhhCC
Q 002667 373 GEADVLIQSIISIKSIIKQDP 393 (895)
Q Consensus 373 ~~~~vv~E~V~vik~Llq~~P 393 (895)
.|+..|.|.+-++-+++...+
T Consensus 590 eDdE~VlQil~~f~~ll~h~~ 610 (708)
T PF05804_consen 590 EDDEIVLQILYVFYQLLFHEE 610 (708)
T ss_pred chHHHHHHHHHHHHHHHcChH
Confidence 244578888888888886533
No 43
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.58 E-value=9.3 Score=50.26 Aligned_cols=100 Identities=20% Similarity=0.134 Sum_probs=58.0
Q ss_pred HHHHHHHHhhcCCCCchhhHHHHHHHHHHhccCCcchhHHHHHHHHHHhcCCChhHHHHHHHHHHHhCCCC--ccchHHH
Q 002667 11 PLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNN--FTLIGRN 88 (895)
Q Consensus 11 piv~~aIkk~l~D~SPYVRK~AA~AI~Kly~ld~pd~~~~L~eil~~LL~D~~p~VvgsAv~Af~EIcP~r--~dLihk~ 88 (895)
|-|..+|-.-+.|.+.-||-+|.-=+.+.---. |+...++.+.|..=+.|...+|-=-|+.-+.+||-+. +..+-..
T Consensus 854 ~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~-~e~~~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~~~ 932 (1692)
T KOG1020|consen 854 PDVQEAVHGRLNDSSASVREAALDLVGRFVLSI-PELIFQYYDQIIERILDTGVSVRKRVIKILRDICEETPDFSKIVDM 932 (1692)
T ss_pred HHHHHHHHHhhccchhHHHHHHHHHHhhhhhcc-HHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhHHHH
Confidence 456667777777777777777776666644334 6655565555555566777777777777777777443 2223334
Q ss_pred HHHHHHhCCCCChhhHHHHHHHH
Q 002667 89 YRNLCQILPDVEEWGQILLIEIL 111 (895)
Q Consensus 89 yrkLc~~L~d~dEWgQv~iL~lL 111 (895)
.-++++...|=+.--|-.+.+++
T Consensus 933 cakmlrRv~DEEg~I~kLv~etf 955 (1692)
T KOG1020|consen 933 CAKMLRRVNDEEGNIKKLVRETF 955 (1692)
T ss_pred HHHHHHHhccchhHHHHHHHHHH
Confidence 44555555544432333333333
No 44
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=95.44 E-value=0.023 Score=46.57 Aligned_cols=51 Identities=33% Similarity=0.247 Sum_probs=40.9
Q ss_pred chhhHHHHHHHHHHhccCCcc----hhHHHHHHHHHHhcCCChhHHHHHHHHHHHh
Q 002667 26 VFVRKCAANALPKLHELRQEE----ITSAIEEIVGILLNDRSPGVVGAAAAAFASI 77 (895)
Q Consensus 26 PYVRK~AA~AI~Kly~ld~pd----~~~~L~eil~~LL~D~~p~VvgsAv~Af~EI 77 (895)
|.||..|+.||..+-... ++ ..+.+++.|..+|.|.++.|-.+|+.|+..|
T Consensus 1 p~vR~~A~~aLg~l~~~~-~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGC-PELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTT-HHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhccc-HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 679999999999765443 33 5567888888899999999999999988643
No 45
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.36 E-value=2 Score=51.11 Aligned_cols=239 Identities=18% Similarity=0.143 Sum_probs=157.2
Q ss_pred hhc-CCCCchhhHHHHHHHHHHhccCCcchhHH-----HHHHHHHHhcCCChhHHHHHHHHHHHhCCCC-----ccchHH
Q 002667 19 KCA-RDPSVFVRKCAANALPKLHELRQEEITSA-----IEEIVGILLNDRSPGVVGAAAAAFASICPNN-----FTLIGR 87 (895)
Q Consensus 19 k~l-~D~SPYVRK~AA~AI~Kly~ld~pd~~~~-----L~eil~~LL~D~~p~VvgsAv~Af~EIcP~r-----~dLihk 87 (895)
+|+ .+.+|-+|-.||-|+..+-.-. .++... -..++-.||...+.-|.--|+-|+-.|..+. +-+-+.
T Consensus 116 ~~l~~~~~~~lq~eAAWaLTnIAsgt-se~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g 194 (514)
T KOG0166|consen 116 EFLSRDDNPTLQFEAAWALTNIASGT-SEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCG 194 (514)
T ss_pred HHHccCCChhHHHHHHHHHHHHhcCc-hhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhc
Confidence 444 6888999999999999998865 443222 2335567899999999999999999997664 223445
Q ss_pred HHHHHHHhCCCCChhhHHHHHHH----HHhhhhhcccccchhhhhhhhhcccCCCcccccccccccccCCCCCCccchhh
Q 002667 88 NYRNLCQILPDVEEWGQILLIEI----LLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRTYDSEL 163 (895)
Q Consensus 88 ~yrkLc~~L~d~dEWgQv~iL~l----L~rY~r~~~~~~~ps~~f~~~~~~~~~~~e~~~~~~~~l~~q~~~~~~~~~~~ 163 (895)
....|+.+|...+. +.+++- |...||.+. |+
T Consensus 195 ~l~pLl~~l~~~~~---~~~lRn~tW~LsNlcrgk~----P~-------------------------------------- 229 (514)
T KOG0166|consen 195 ALDPLLRLLNKSDK---LSMLRNATWTLSNLCRGKN----PS-------------------------------------- 229 (514)
T ss_pred chHHHHHHhccccc---hHHHHHHHHHHHHHHcCCC----CC--------------------------------------
Confidence 56677777766655 222222 223332110 00
Q ss_pred hhhhhhhcccccccccccCCCcccccccccCccccCCCCChhHHHHHHhhhhhccCCChHHHHHHHHHHHhcC--CHHHH
Q 002667 164 VNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMS--PKEDV 241 (895)
Q Consensus 164 ~~~~~~~~~~~~d~~~~~s~~~~~~~~~~~~~~~~~~~~d~D~~lLL~~~~pLLqS~NsAVVlaaa~l~~~la--p~~~l 241 (895)
|. + .-+.-+|..+.-||+|..+-|.--|+-+.-|++ +.+.+
T Consensus 230 -----------P~-------------------------~-~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~i 272 (514)
T KOG0166|consen 230 -----------PP-------------------------F-DVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKI 272 (514)
T ss_pred -----------Cc-------------------------H-HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHH
Confidence 00 0 124568889999999999999988888777775 44433
Q ss_pred H-----HHHHHHHHHhcC-CCcchHHHHHHHHHHHH---------hCCcccccccccceeccCCcHHHHHHHHHHHHhhc
Q 002667 242 K-----RIVKPLLFILRS-SGASKYVVLCNIQVFAK---------ALPHLFVPHYEDFFVSSSDSYQSKALKLEILSSIV 306 (895)
Q Consensus 242 ~-----~~~~pLv~LL~s-~~eiqyvvL~~I~~i~~---------~~p~lF~~~l~~Ffi~~sDp~~IK~lKLeIL~~La 306 (895)
+ .++.-|+.||.. ++.++--+|+.|--|+. ...+ .-|++..++- .+....||...-=+|.+++
T Consensus 273 q~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~-~L~~l~~ll~-~s~~~~ikkEAcW~iSNIt 350 (514)
T KOG0166|consen 273 QMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSG-ALPVLSNLLS-SSPKESIKKEACWTISNIT 350 (514)
T ss_pred HHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcC-hHHHHHHHhc-cCcchhHHHHHHHHHHHhh
Confidence 3 245667888874 67788888887654432 1222 2234433321 1333469999999999987
Q ss_pred CCCCHH--------HHHHHHHHhhccCChhHHHHHHHHHHHHHhh
Q 002667 307 TESSIS--------SVFKEFQDYIRDPDRRFAADTVAAIGLCARK 343 (895)
Q Consensus 307 ne~Nv~--------~IL~EL~~Yv~~~D~ef~~~aI~AIG~~A~~ 343 (895)
- .|.. -++..|..-+...+.+.+++|.-||+.++..
T Consensus 351 A-G~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~ 394 (514)
T KOG0166|consen 351 A-GNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSS 394 (514)
T ss_pred c-CCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhccc
Confidence 5 5543 2456777777788889999999999987754
No 46
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=95.22 E-value=0.88 Score=49.68 Aligned_cols=164 Identities=19% Similarity=0.174 Sum_probs=112.4
Q ss_pred CCCchhhHHHHHHHHHHhccCCcchh-----HHHHHHHHHHhcCCChhHHHHHHHHHHHhCCC--CccchHHHHHHHHHh
Q 002667 23 DPSVFVRKCAANALPKLHELRQEEIT-----SAIEEIVGILLNDRSPGVVGAAAAAFASICPN--NFTLIGRNYRNLCQI 95 (895)
Q Consensus 23 D~SPYVRK~AA~AI~Kly~ld~pd~~-----~~L~eil~~LL~D~~p~VvgsAv~Af~EIcP~--r~dLihk~yrkLc~~ 95 (895)
...|+++..|.++++++-.. |... -..+.+|..+|.+++|.|--.|+.|+..+..+ +-..|.-++.++|+.
T Consensus 24 t~dp~i~e~al~al~n~aaf--~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~~i~~Vc~~ 101 (254)
T PF04826_consen 24 TEDPFIQEKALIALGNSAAF--PFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIKMYIPQVCEE 101 (254)
T ss_pred CCChHHHHHHHHHHHhhccC--hhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHH
Confidence 45799999999999986333 2211 23556889999999999999999999988754 345566677888987
Q ss_pred CCC--CChhhHHHHHHHHHhhhhhcccccchhhhhhhhhcccCCCcccccccccccccCCCCCCccchhhhhhhhhhccc
Q 002667 96 LPD--VEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRTYDSELVNLVSRSYIE 173 (895)
Q Consensus 96 L~d--~dEWgQv~iL~lL~rY~r~~~~~~~ps~~f~~~~~~~~~~~e~~~~~~~~l~~q~~~~~~~~~~~~~~~~~~~~~ 173 (895)
+.. +|.-.|...|++|+....++.. ..+
T Consensus 102 ~~s~~lns~~Q~agLrlL~nLtv~~~~-------------------------------------------~~~------- 131 (254)
T PF04826_consen 102 TVSSPLNSEVQLAGLRLLTNLTVTNDY-------------------------------------------HHM------- 131 (254)
T ss_pred HhcCCCCCHHHHHHHHHHHccCCCcch-------------------------------------------hhh-------
Confidence 654 4777899999999987642100 000
Q ss_pred ccccccccCCCcccccccccCccccCCCCChhHHHHHHhhhhhccCCChHHHHHHHHHHHhcCCHHH-HH-----HHHHH
Q 002667 174 GLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSPKED-VK-----RIVKP 247 (895)
Q Consensus 174 ~~d~~~~~s~~~~~~~~~~~~~~~~~~~~d~D~~lLL~~~~pLLqS~NsAVVlaaa~l~~~lap~~~-l~-----~~~~p 247 (895)
+...+..+.+||.+.|.-+-..|.+++++++-... .+ ++...
T Consensus 132 --------------------------------l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np~~~~~Ll~~q~~~~ 179 (254)
T PF04826_consen 132 --------------------------------LANYIPDLLSLLSSGSEKTKVQVLKVLVNLSENPDMTRELLSAQVLSS 179 (254)
T ss_pred --------------------------------HHhhHHHHHHHHHcCChHHHHHHHHHHHHhccCHHHHHHHHhccchhH
Confidence 01123445578888888888899999999875322 22 24456
Q ss_pred HHHHhcC--CCcchHHHHHHHHHHH
Q 002667 248 LLFILRS--SGASKYVVLCNIQVFA 270 (895)
Q Consensus 248 Lv~LL~s--~~eiqyvvL~~I~~i~ 270 (895)
|+.|+.+ +.++-.-+|.-+.-|.
T Consensus 180 ~~~Lf~~~~~~~~l~~~l~~~~ni~ 204 (254)
T PF04826_consen 180 FLSLFNSSESKENLLRVLTFFENIN 204 (254)
T ss_pred HHHHHccCCccHHHHHHHHHHHHHH
Confidence 7788865 3566666666555553
No 47
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.15 E-value=1.3 Score=54.32 Aligned_cols=84 Identities=18% Similarity=0.178 Sum_probs=59.5
Q ss_pred HHHHHHHhhcCCCCchhhHHHHHHHHHHhccCCcchhHHHHHHHHHHhc---CCChhHHHHHHHHHHHhCCCCccchHHH
Q 002667 12 LVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLN---DRSPGVVGAAAAAFASICPNNFTLIGRN 88 (895)
Q Consensus 12 iv~~aIkk~l~D~SPYVRK~AA~AI~Kly~ld~pd~~~~L~eil~~LL~---D~~p~VvgsAv~Af~EIcP~r~dLihk~ 88 (895)
-+.-||.|+.....++-||..-.||-++-.+. ++.+-+...|.+ -+.+.+-++|+.++..|.+.. ++...
T Consensus 64 e~ff~~tKlfQskd~~LRr~vYl~Ikels~is-----edviivtsslmkD~t~~~d~yr~~AiR~L~~I~d~~--m~~~i 136 (865)
T KOG1078|consen 64 ELFFAITKLFQSKDVSLRRMVYLAIKELSKIS-----EDVIIVTSSLMKDMTGKEDLYRAAAIRALCSIIDGT--MLQAI 136 (865)
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHhhccccc-----hhhhhhhHHHHhhccCCCcchhHHHHHHHHhhcCcc--hhHHH
Confidence 46779999999999999999999999886654 233334444444 467889999999999998775 22223
Q ss_pred HHHHHHhCCCCChh
Q 002667 89 YRNLCQILPDVEEW 102 (895)
Q Consensus 89 yrkLc~~L~d~dEW 102 (895)
=|++=..+++-...
T Consensus 137 ery~kqaivd~~~a 150 (865)
T KOG1078|consen 137 ERYMKQAIVDKNPA 150 (865)
T ss_pred HHHHHhHeeccccc
Confidence 35555556654433
No 48
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.08 E-value=9.7 Score=45.53 Aligned_cols=176 Identities=11% Similarity=0.156 Sum_probs=99.6
Q ss_pred HHHHHHhhccCChhHHHHHHHHHHHHHhhCcc----hHHHHHHHHHHHHHhhhccccccCCCCCC---chhhhHHH-HHH
Q 002667 315 FKEFQDYIRDPDRRFAADTVAAIGLCARKLPK----MANTCVEGLLALIRQELLTSDIESGNGEA---DVLIQSII-SIK 386 (895)
Q Consensus 315 L~EL~~Yv~~~D~ef~~~aI~AIG~~A~~~p~----~a~~cl~~Ll~LLs~~~~~~~~~~~~~~~---~vv~E~V~-vik 386 (895)
++=+-.-+.+++..+...|+.-|.......+. ....|+..++.+++. .++ ..+.+.+. .+.
T Consensus 252 i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~-----------~e~~~i~~~a~~~n~~l~ 320 (675)
T KOG0212|consen 252 INVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSD-----------TEEMSIKEYAQMVNGLLL 320 (675)
T ss_pred hhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCC-----------CccccHHHHHHHHHHHHH
Confidence 33333344455556666666666554443333 345666666666652 111 11222222 122
Q ss_pred HHHhhCC----cchHHHHHHHHHhhhccCchhhHHhhh-hhhccccCCCCCccchHHHHHHHHHHhhccCcHHHHHHHHH
Q 002667 387 SIIKQDP----SCHEKVIIQLFRSLDSIKVPEARVMII-WMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILN 461 (895)
Q Consensus 387 ~Llq~~P----~~~~~ii~~L~~~ld~i~~p~ArAsIi-WLLGEY~~~~e~ip~ia~dvLr~l~k~F~~E~~~VKlqILt 461 (895)
.++-..- -.+..++.-|.+++..-. .++|.+++ |++-=|......+-....+++-.+.+...+-+++|=++.|.
T Consensus 321 ~l~s~~~~~~~id~~~ii~vl~~~l~~~~-~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~ 399 (675)
T KOG0212|consen 321 KLVSSERLKEEIDYGSIIEVLTKYLSDDR-EETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALS 399 (675)
T ss_pred HHHhhhhhccccchHHHHHHHHHHhhcch-HHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHH
Confidence 2222111 124567777777665433 34565555 99987764322222234677888888999999999999999
Q ss_pred HHHHHhhhcCCCChHHHHHHHHHHHHHHccCCChHHHhHHHHHHH
Q 002667 462 TTIKVLLCAKGGDMWTITRLFSYLLELAECDLNYDVRDRARFFKK 506 (895)
Q Consensus 462 aaaKL~~~~p~e~~~~l~~L~qyvL~la~~D~n~DVRDRAr~y~~ 506 (895)
+.+-+....... -..++++-+|++-+.| .-=++.|+-|+-|
T Consensus 400 lla~i~~s~~~~---~~~~fl~sLL~~f~e~-~~~l~~Rg~lIIR 440 (675)
T KOG0212|consen 400 LLASICSSSNSP---NLRKFLLSLLEMFKED-TKLLEVRGNLIIR 440 (675)
T ss_pred HHHHHhcCcccc---cHHHHHHHHHHHHhhh-hHHHHhhhhHHHH
Confidence 999886543221 2456777777775554 4556777766544
No 49
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=95.07 E-value=3.2 Score=48.65 Aligned_cols=208 Identities=12% Similarity=0.090 Sum_probs=106.7
Q ss_pred HHHHHHHHhcCC---CcchHHHHHHHHHHHHhCCcccccccc--ccee------ccCCcHHHHHHHHHHHHhhcCCCC--
Q 002667 244 IVKPLLFILRSS---GASKYVVLCNIQVFAKALPHLFVPHYE--DFFV------SSSDSYQSKALKLEILSSIVTESS-- 310 (895)
Q Consensus 244 ~~~pLv~LL~s~---~eiqyvvL~~I~~i~~~~p~lF~~~l~--~Ffi------~~sDp~~IK~lKLeIL~~Lane~N-- 310 (895)
.+++|+.+|+.. ..++|=+|-+|=.++-..+ ....+. .++. +.+--.-|-|..+-+|.+|.+...
T Consensus 186 ~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~--~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~ 263 (429)
T cd00256 186 GVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPH--AAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDR 263 (429)
T ss_pred CHHHHHHHHhhccccHHHHHHHHHHHHHHhccHH--HHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhccccc
Confidence 567888888763 3678888877766653222 111111 1111 111124566777788888887431
Q ss_pred -----H-HHHHH-HHHH------hhccCChhHHHHHHHHHHHHHhhCcchH--HHHHHHHHHHHHhhhccccccCCCCCC
Q 002667 311 -----I-SSVFK-EFQD------YIRDPDRRFAADTVAAIGLCARKLPKMA--NTCVEGLLALIRQELLTSDIESGNGEA 375 (895)
Q Consensus 311 -----v-~~IL~-EL~~------Yv~~~D~ef~~~aI~AIG~~A~~~p~~a--~~cl~~Ll~LLs~~~~~~~~~~~~~~~ 375 (895)
+ ..++. .+.. +=+-.|.|+..+.-.--..+..++.+.+ +.+ .-++.+ ..+.-+..|. ++
T Consensus 264 ~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y---~~El~s-g~L~WSp~H~--se 337 (429)
T cd00256 264 EVKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEY---KSELRS-GRLHWSPVHK--SE 337 (429)
T ss_pred chhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHH---HHHHhc-CCccCCCCCC--Cc
Confidence 1 12222 2222 2123566655544333333333322211 111 111111 1111112232 12
Q ss_pred chhhhHHHHHHHHHhhCCcchHHHHHHHHHhhhccCchhhHHhhhhhhccccCCCCCccchHHHHHHH------HHHhhc
Q 002667 376 DVLIQSIISIKSIIKQDPSCHEKVIIQLFRSLDSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKY------LAWCFK 449 (895)
Q Consensus 376 ~vv~E~V~vik~Llq~~P~~~~~ii~~L~~~ld~i~~p~ArAsIiWLLGEY~~~~e~ip~ia~dvLr~------l~k~F~ 449 (895)
..=.|-+. ++ .+..-+++++|++.++.-.+|...|..+.=||||+... |. .-.++.. +.+-..
T Consensus 338 ~FW~EN~~---kf----~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~---P~-gr~i~~~lg~K~~vM~Lm~ 406 (429)
T cd00256 338 KFWRENAD---RL----NEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHY---PR-GKDVVEQLGGKQRVMRLLN 406 (429)
T ss_pred hHHHHHHH---HH----HhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHC---cc-HHHHHHHcCcHHHHHHHhc
Confidence 23233222 22 12235788999999977778888888889999998642 32 1222221 122234
Q ss_pred cCcHHHHHHHHHHHHHHhhhc
Q 002667 450 SEAVETKLQILNTTIKVLLCA 470 (895)
Q Consensus 450 ~E~~~VKlqILtaaaKL~~~~ 470 (895)
.++++||.+.|.+.-|+.+++
T Consensus 407 h~d~~Vr~eAL~avQklm~~~ 427 (429)
T cd00256 407 HEDPNVRYEALLAVQKLMVHN 427 (429)
T ss_pred CCCHHHHHHHHHHHHHHHHhc
Confidence 678999999999999997653
No 50
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=94.79 E-value=14 Score=45.47 Aligned_cols=107 Identities=13% Similarity=0.073 Sum_probs=78.2
Q ss_pred HHHHHHHHhhcCCCCchhhHHHHHHHHHHhccCCcchhHHHHHHHHHH---hcCCChhHHHHHHHHHHHhCCCCccc---
Q 002667 11 PLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGIL---LNDRSPGVVGAAAAAFASICPNNFTL--- 84 (895)
Q Consensus 11 piv~~aIkk~l~D~SPYVRK~AA~AI~Kly~ld~pd~~~~L~eil~~L---L~D~~p~VvgsAv~Af~EIcP~r~dL--- 84 (895)
-.++..|.+|+.|.+-.||-.+|+|+.-++....|=-.+++..+++-| .+-.---+++|-+.|.--+||..-.-
T Consensus 552 ~~lv~ii~~gl~De~qkVR~itAlalsalaeaa~Pygie~fDsVlkpLwkgir~hrgk~laafLkAigyliplmd~eya~ 631 (1172)
T KOG0213|consen 552 KPLVKIIEHGLKDEQQKVRTITALALSALAEAATPYGIEQFDSVLKPLWKGIRQHRGKELAAFLKAIGYLIPLMDAEYAS 631 (1172)
T ss_pred HHHHHHHHHhhcccchhhhhHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHccChHHHHHHHHHhhccccccHHHHH
Confidence 446789999999999999999999999999985466666666665544 33444567777788888999964111
Q ss_pred --hHHHHHHHHHhCCCCChhhHHHHHHHHHhhhhh
Q 002667 85 --IGRNYRNLCQILPDVEEWGQILLIEILLRYVVA 117 (895)
Q Consensus 85 --ihk~yrkLc~~L~d~dEWgQv~iL~lL~rY~r~ 117 (895)
.......|.+-...-||=..-++|.++.+.|-+
T Consensus 632 yyTrevmlil~rEf~sPDeemkkivLKVv~qcc~t 666 (1172)
T KOG0213|consen 632 YYTREVMLILIREFGSPDEEMKKIVLKVVKQCCAT 666 (1172)
T ss_pred HhHHHHHHHHHHhhCCChHHHHHHHHHHHHHHhcc
Confidence 112234555556667888888899999998853
No 51
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=94.72 E-value=1.6 Score=54.07 Aligned_cols=284 Identities=14% Similarity=0.184 Sum_probs=161.8
Q ss_pred HHHhhhhhccCCChHHHHHHHHHHHhcCCHHH----HH--HHHHHHHHHhcCCCcchHHHHHHHHHHHHh--CCcccc--
Q 002667 209 LLQCTSPLLWSHNSAVVLAAAGVHWIMSPKED----VK--RIVKPLLFILRSSGASKYVVLCNIQVFAKA--LPHLFV-- 278 (895)
Q Consensus 209 LL~~~~pLLqS~NsAVVlaaa~l~~~lap~~~----l~--~~~~pLv~LL~s~~eiqyvvL~~I~~i~~~--~p~lF~-- 278 (895)
++..+..+|++.|.-++-.+.++.+.++-... +- .++..|+.||.. ++.+.++|..+..|+.. ...+|.
T Consensus 332 iV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d-~~~~~val~iLy~LS~dd~~r~~f~~T 410 (708)
T PF05804_consen 332 IVEKLLKLLPSENEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKD-PNFREVALKILYNLSMDDEARSMFAYT 410 (708)
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCC-CchHHHHHHHHHHhccCHhhHHHHhhc
Confidence 45667788899999999999999999975322 22 256788888874 56778888888888753 234554
Q ss_pred ---cccccceeccCCcHHHHHHHHHHHHhhcC-CCCHHHHHHH-----HHHhhccCChhHHHHHHHHHHHHHhhCcchHH
Q 002667 279 ---PHYEDFFVSSSDSYQSKALKLEILSSIVT-ESSISSVFKE-----FQDYIRDPDRRFAADTVAAIGLCARKLPKMAN 349 (895)
Q Consensus 279 ---~~l~~Ffi~~sDp~~IK~lKLeIL~~Lan-e~Nv~~IL~E-----L~~Yv~~~D~ef~~~aI~AIG~~A~~~p~~a~ 349 (895)
|.+........+ ..+...-+-++.+|+. ..|++.|.+. |...+-.....+.-+.||.| ++.-+..-.
T Consensus 411 dcIp~L~~~Ll~~~~-~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D~lLlKlIRNi---S~h~~~~k~ 486 (708)
T PF05804_consen 411 DCIPQLMQMLLENSE-EEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTRDPLLLKLIRNI---SQHDGPLKE 486 (708)
T ss_pred chHHHHHHHHHhCCC-ccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhcccHHHHHHHHHH---HhcCchHHH
Confidence 333333333333 2355555777787764 6777766642 33333222223433445544 544434333
Q ss_pred HHHHHHHHHHHhhhccccccCCCCCCchhhhHHHHHHHHHhhCCcchHHHH------HHHHHhhhc-cCchhhHHhhhhh
Q 002667 350 TCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQDPSCHEKVI------IQLFRSLDS-IKVPEARVMIIWM 422 (895)
Q Consensus 350 ~cl~~Ll~LLs~~~~~~~~~~~~~~~~vv~E~V~vik~Llq~~P~~~~~ii------~~L~~~ld~-i~~p~ArAsIiWL 422 (895)
..++++.+|+.. ... ..++..+.|++-.+.+|-..+. ....++ ..|.+.+.. ...++..--++=+
T Consensus 487 ~f~~~i~~L~~~--v~~-----~~~ee~~vE~LGiLaNL~~~~l-d~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~ 558 (708)
T PF05804_consen 487 LFVDFIGDLAKI--VSS-----GDSEEFVVECLGILANLTIPDL-DWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVIL 558 (708)
T ss_pred HHHHHHHHHHHH--hhc-----CCcHHHHHHHHHHHHhcccCCc-CHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHH
Confidence 444444444432 000 1234578888877776643221 233333 333343321 2333444444555
Q ss_pred hccccCCCC---Cc--cchHHHHHHHHHHhhccCcHHHHHHHHHHHHHHhhhcCCCChHHH---HHHHHHHHHHHccCCC
Q 002667 423 VGEYSSVGV---KI--PRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTI---TRLFSYLLELAECDLN 494 (895)
Q Consensus 423 LGEY~~~~e---~i--p~ia~dvLr~l~k~F~~E~~~VKlqILtaaaKL~~~~p~e~~~~l---~~L~qyvL~la~~D~n 494 (895)
+|--+..-. .+ ..+++.++..+ +=.+|+++.-+||+-++-++..+.+.- +.+ ..+..|++.+ ..|.|
T Consensus 559 ~gtla~d~~~A~lL~~sgli~~Li~LL--~~kqeDdE~VlQil~~f~~ll~h~~tr--~~ll~~~~~~~ylidL-~~d~N 633 (708)
T PF05804_consen 559 LGTLASDPECAPLLAKSGLIPTLIELL--NAKQEDDEIVLQILYVFYQLLFHEETR--EVLLKETEIPAYLIDL-MHDKN 633 (708)
T ss_pred HHHHHCCHHHHHHHHhCChHHHHHHHH--HhhCchHHHHHHHHHHHHHHHcChHHH--HHHHhccchHHHHHHH-hcCCC
Confidence 665432100 00 12233333333 224678899999999999998876431 111 2366788887 57899
Q ss_pred hHHHhHHHHHHHHccC
Q 002667 495 YDVRDRARFFKKLFSH 510 (895)
Q Consensus 495 ~DVRDRAr~y~~LL~~ 510 (895)
.+||.=|-.-.-++..
T Consensus 634 ~~ir~~~d~~Ldii~e 649 (708)
T PF05804_consen 634 AEIRKVCDNALDIIAE 649 (708)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999988887777753
No 52
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.71 E-value=11 Score=46.56 Aligned_cols=355 Identities=15% Similarity=0.151 Sum_probs=201.4
Q ss_pred hhhhHHHHHHHHh---hcCCCCchhhHHHHHHHHHHhccCCcchhHHHHHHHHHHhcCCChhHHHHHHHHHHHhC----C
Q 002667 7 HVISPLVLVAVGK---CARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASIC----P 79 (895)
Q Consensus 7 ~~I~piv~~aIkk---~l~D~SPYVRK~AA~AI~Kly~ld~pd~~~~L~eil~~LL~D~~p~VvgsAv~Af~EIc----P 79 (895)
+.++|.++..+.| +-.|-..-+-|+|.-|+.=+-+....+..+.+.+.++.-+...|=-=.-+|++||-.|. |
T Consensus 318 ~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~ 397 (859)
T KOG1241|consen 318 QDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEP 397 (859)
T ss_pred hHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCch
Confidence 4678888888777 45555566777777776644444313456677888887777666666778888888774 3
Q ss_pred CCc-cchHHHHHHHHHhCCCCChhhHHHHHHHHHhhhhhcccccchhhhhhhhhcccCCCcccccccccccccCCCCCCc
Q 002667 80 NNF-TLIGRNYRNLCQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRT 158 (895)
Q Consensus 80 ~r~-dLihk~yrkLc~~L~d~dEWgQv~iL~lL~rY~r~~~~~~~ps~~f~~~~~~~~~~~e~~~~~~~~l~~q~~~~~~ 158 (895)
+++ .+.+.....+++++.|-.=|-.-..=-.|.|-+- + +++...
T Consensus 398 ~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d--~------------l~e~~~--------------------- 442 (859)
T KOG1241|consen 398 DKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIAD--F------------LPEAII--------------------- 442 (859)
T ss_pred hhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHh--h------------chhhcc---------------------
Confidence 332 3455566677777665433332211112222220 0 000000
Q ss_pred cchhhhhhhhhhcccccccccccCCCcccccccccCccccCCCCChhHHHHHHhhhhhcc--CCChHHHHHHHHHHHhcC
Q 002667 159 YDSELVNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLW--SHNSAVVLAAAGVHWIMS 236 (895)
Q Consensus 159 ~~~~~~~~~~~~~~~~~d~~~~~s~~~~~~~~~~~~~~~~~~~~d~D~~lLL~~~~pLLq--S~NsAVVlaaa~l~~~la 236 (895)
+. .++-..+.-+++ +..|=|.-.|+..|..++
T Consensus 443 ---------------------------------------------n~-~~l~~~l~~l~~gL~DePrva~N~CWAf~~La 476 (859)
T KOG1241|consen 443 ---------------------------------------------NQ-ELLQSKLSALLEGLNDEPRVASNVCWAFISLA 476 (859)
T ss_pred ---------------------------------------------cH-hhhhHHHHHHHHHhhhCchHHHHHHHHHHHHH
Confidence 00 001111112222 234566677776665553
Q ss_pred -------CH--------HHHHHHHHHHHHHhc----CCCcchHHHHHHHHHHHHhCCcccccccccceeccCCcHHHHHH
Q 002667 237 -------PK--------EDVKRIVKPLLFILR----SSGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKAL 297 (895)
Q Consensus 237 -------p~--------~~l~~~~~pLv~LL~----s~~eiqyvvL~~I~~i~~~~p~lF~~~l~~Ffi~~sDp~~IK~l 297 (895)
+. ..+..+++.|+.--. ...|.|-.+...+-.|++..|+...+-+..|+ -+-..
T Consensus 477 ea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~-------l~il~ 549 (859)
T KOG1241|consen 477 EAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLT-------LVILE 549 (859)
T ss_pred HHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHH-------HHHHH
Confidence 11 245667777765432 24789999999999999888876555433332 12222
Q ss_pred HHHHHHhhcCCCCH--HHHHHHHHHhhccCChhHHHHHHHH-HHHHHhhCcchHHHHHHHHHHHHHhhhccccccCCCCC
Q 002667 298 KLEILSSIVTESSI--SSVFKEFQDYIRDPDRRFAADTVAA-IGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGE 374 (895)
Q Consensus 298 KLeIL~~Lane~Nv--~~IL~EL~~Yv~~~D~ef~~~aI~A-IG~~A~~~p~~a~~cl~~Ll~LLs~~~~~~~~~~~~~~ 374 (895)
||+=-.. ..-.+. ..=++||+.-+. ..++. |.+.+.+++++++..+..+++++... +
T Consensus 550 kl~q~i~-~~~l~~~dr~q~~eLQs~Lc--------~~Lq~i~rk~~~~~~~~~d~iM~lflri~~s~-----------~ 609 (859)
T KOG1241|consen 550 KLDQTIS-SQILSLADRAQLNELQSLLC--------NTLQSIIRKVGSDIREVSDQIMGLFLRIFESK-----------R 609 (859)
T ss_pred HHHHHHH-HHhccHhhHHHHHHHHHHHH--------HHHHHHHHHccccchhHHHHHHHHHHHHHcCC-----------c
Confidence 3321111 000000 122344444322 12222 22344578899999999999998741 1
Q ss_pred Cchhhh-HHHHHHHHHhhCCcchH----HHHHHHHHhhhccCchhhHHhhhhhhccccCCCC--CccchHHHHHHHHHHh
Q 002667 375 ADVLIQ-SIISIKSIIKQDPSCHE----KVIIQLFRSLDSIKVPEARVMIIWMVGEYSSVGV--KIPRMLTTVLKYLAWC 447 (895)
Q Consensus 375 ~~vv~E-~V~vik~Llq~~P~~~~----~ii~~L~~~ld~i~~p~ArAsIiWLLGEY~~~~e--~ip~ia~dvLr~l~k~ 447 (895)
..++.| ++..+-.++..--..+. .....|..-|.+.++-..-++.+=++|.-+...+ ..|+ +.++...|++.
T Consensus 610 s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~i~py-~d~~mt~Lvq~ 688 (859)
T KOG1241|consen 610 SAVVHEEAFLAVSTLAESLGKGFAKYMPAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDDILPY-CDELMTVLVQC 688 (859)
T ss_pred cccchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHH
Confidence 223444 44555555543333333 3455666666677777888888999999876332 3465 67888889988
Q ss_pred hccC--cHHHHHHHHHHHHHHhhhc
Q 002667 448 FKSE--AVETKLQILNTTIKVLLCA 470 (895)
Q Consensus 448 F~~E--~~~VKlqILtaaaKL~~~~ 470 (895)
..++ +..||-+||..+.-+.+--
T Consensus 689 Lss~~~hR~vKP~IlS~FgDIAlaI 713 (859)
T KOG1241|consen 689 LSSPNLHRNVKPAILSVFGDIALAI 713 (859)
T ss_pred ccCccccccccchHHHHHHHHHHHH
Confidence 8776 4689999999998886654
No 53
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.70 E-value=8.3 Score=47.52 Aligned_cols=354 Identities=17% Similarity=0.193 Sum_probs=191.6
Q ss_pred cchhhhHHHHHHHHhhcCCCCchhhHHHHHHHHHHhccCCcc---hhHHHHHHHHHH---hcCCChhHHHHHHHHHHHh-
Q 002667 5 RLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEE---ITSAIEEIVGIL---LNDRSPGVVGAAAAAFASI- 77 (895)
Q Consensus 5 Rv~~I~piv~~aIkk~l~D~SPYVRK~AA~AI~Kly~ld~pd---~~~~L~eil~~L---L~D~~p~VvgsAv~Af~EI- 77 (895)
++.-|++-.++.|-+.+.|++-.||.|||-++.++.+.. |+ ....+..++..| |+| .|-|..++--||.-+
T Consensus 399 ~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l-~e~~~n~~~l~~~l~~l~~gL~D-ePrva~N~CWAf~~La 476 (859)
T KOG1241|consen 399 KLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFL-PEAIINQELLQSKLSALLEGLND-EPRVASNVCWAFISLA 476 (859)
T ss_pred hhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhc-hhhcccHhhhhHHHHHHHHHhhh-CchHHHHHHHHHHHHH
Confidence 344567777888999999999999999999999999987 66 333444444444 455 789999988777544
Q ss_pred --CC----CC--ccchHHHHHHHHHhCCCCChh-------hHHHHHHHHHhhhhhcccccchhhhhhhhhcccCCCcccc
Q 002667 78 --CP----NN--FTLIGRNYRNLCQILPDVEEW-------GQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDV 142 (895)
Q Consensus 78 --cP----~r--~dLihk~yrkLc~~L~d~dEW-------gQv~iL~lL~rY~r~~~~~~~ps~~f~~~~~~~~~~~e~~ 142 (895)
|+ .+ -+...+.|..+++.|....+- ..+..-+.|+...+..++-+-|.. .
T Consensus 477 ea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v-----~---------- 541 (859)
T KOG1241|consen 477 EAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMV-----Q---------- 541 (859)
T ss_pred HHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHH-----H----------
Confidence 32 22 122336666666666543222 233333333322211000000000 0
Q ss_pred cccccccccCCCCCCccchhhhhhhhhhcccccccccccCCCcccccccccCccccCCCCChhHHHHHHhhhhhccCCCh
Q 002667 143 FDVNVALEDNGIPSRTYDSELVNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNS 222 (895)
Q Consensus 143 ~~~~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~d~~~~~s~~~~~~~~~~~~~~~~~~~~d~D~~lLL~~~~pLLqS~Ns 222 (895)
..+.. .+ ...++.++ +..++-+-|.=++- ||
T Consensus 542 -~~~l~----------------il------~kl~q~i~------------------~~~l~~~dr~q~~e----LQ---- 572 (859)
T KOG1241|consen 542 -KLTLV----------------IL------EKLDQTIS------------------SQILSLADRAQLNE----LQ---- 572 (859)
T ss_pred -HHHHH----------------HH------HHHHHHHH------------------HHhccHhhHHHHHH----HH----
Confidence 00000 00 00000000 00000000111111 11
Q ss_pred HHHHHHHHHHHh-cCC--HHHHHHHHHHHHHHhcC--CCcchHHHHHHHHHHHHhCCcccccccccceec------cCCc
Q 002667 223 AVVLAAAGVHWI-MSP--KEDVKRIVKPLLFILRS--SGASKYVVLCNIQVFAKALPHLFVPHYEDFFVS------SSDS 291 (895)
Q Consensus 223 AVVlaaa~l~~~-lap--~~~l~~~~~pLv~LL~s--~~eiqyvvL~~I~~i~~~~p~lF~~~l~~Ffi~------~sDp 291 (895)
++..++.+.... +.+ +.....+...|+|++.+ +.-++-=++-.|..++..-..=|..|...|+.. ..+.
T Consensus 573 s~Lc~~Lq~i~rk~~~~~~~~~d~iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~gL~n~~e 652 (859)
T KOG1241|consen 573 SLLCNTLQSIIRKVGSDIREVSDQIMGLFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFAKYMPAFKPYLLMGLSNFQE 652 (859)
T ss_pred HHHHHHHHHHHHHccccchhHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhcchH
Confidence 222333333322 222 23455677778888876 344555566666666666666677777666431 2334
Q ss_pred HHHHHHHHHHHHhhcCC--CCHH----HHHHHHHHhhccC--ChhHHHHHHHHHHHHHhhCcchHHHHHHHHHHHHHhhh
Q 002667 292 YQSKALKLEILSSIVTE--SSIS----SVFKEFQDYIRDP--DRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQEL 363 (895)
Q Consensus 292 ~~IK~lKLeIL~~Lane--~Nv~----~IL~EL~~Yv~~~--D~ef~~~aI~AIG~~A~~~p~~a~~cl~~Ll~LLs~~~ 363 (895)
.++-.-.+-+...|++. +++- .++.-|...+.++ +++++-..+...|.+|..+......+++..+.++++-.
T Consensus 653 ~qVc~~aVglVgdl~raL~~~i~py~d~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAlaIg~~F~~Yl~~vm~llq~as 732 (859)
T KOG1241|consen 653 YQVCAAAVGLVGDLARALEDDILPYCDELMTVLVQCLSSPNLHRNVKPAILSVFGDIALAIGADFEPYLEMVMPLLQQAS 732 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHccCccccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 67777888888877763 4443 4555555566554 66788888999999999999999999999999998521
Q ss_pred ccccccCCCCCCc----hh---h----hHHHHHHHHHhhC--CcchHHHHHHHHHhhhccCc-----hhhHHhhhhhhcc
Q 002667 364 LTSDIESGNGEAD----VL---I----QSIISIKSIIKQD--PSCHEKVIIQLFRSLDSIKV-----PEARVMIIWMVGE 425 (895)
Q Consensus 364 ~~~~~~~~~~~~~----vv---~----E~V~vik~Llq~~--P~~~~~ii~~L~~~ld~i~~-----p~ArAsIiWLLGE 425 (895)
....++.+. ++ . |+.+.|-+=+..+ +......+.++...++.|.. ..+.++++=+||.
T Consensus 733 ----~~~~d~~~~~~~dYvd~LRe~~leay~gi~qglk~~~~~~~~~p~v~~I~sfi~~I~~e~~~~~~~~~~a~GlIgD 808 (859)
T KOG1241|consen 733 ----SVQTDPADDSMVDYVDELREGILEAYTGIIQGLKTHADVMLVQPYVPHIISFIDRIAAEPDVSEALHAAALGLIGD 808 (859)
T ss_pred ----hccCCCCcccHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHHH
Confidence 111111111 12 1 1222222222332 22334556677777776631 3355666788887
Q ss_pred ccC
Q 002667 426 YSS 428 (895)
Q Consensus 426 Y~~ 428 (895)
-+.
T Consensus 809 L~~ 811 (859)
T KOG1241|consen 809 LAT 811 (859)
T ss_pred HHH
Confidence 664
No 54
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=94.70 E-value=2.2 Score=49.76 Aligned_cols=225 Identities=14% Similarity=0.048 Sum_probs=144.2
Q ss_pred HHHHHHHHhhc-CCCCchhhHHHHHHHHHHhccCCcchhHHHHHHHHHHhcCCChhHHHHHHHHHHHhCCCCccchHHHH
Q 002667 11 PLVLVAVGKCA-RDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNNFTLIGRNY 89 (895)
Q Consensus 11 piv~~aIkk~l-~D~SPYVRK~AA~AI~Kly~ld~pd~~~~L~eil~~LL~D~~p~VvgsAv~Af~EIcP~r~dLihk~y 89 (895)
|-.+..+...+ .|.++-||..|+.++... + .+..++.+...|.|.++.|-.+|+.||-++-... ..
T Consensus 53 ~~a~~~L~~aL~~d~~~ev~~~aa~al~~~---~----~~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~~~------a~ 119 (410)
T TIGR02270 53 KAATELLVSALAEADEPGRVACAALALLAQ---E----DALDLRSVLAVLQAGPEGLCAGIQAALGWLGGRQ------AE 119 (410)
T ss_pred HhHHHHHHHHHhhCCChhHHHHHHHHHhcc---C----ChHHHHHHHHHhcCCCHHHHHHHHHHHhcCCchH------HH
Confidence 44455555556 588999999988888532 3 1122445556778999999999999999987654 55
Q ss_pred HHHHHhCCCCChhhHHHHHHHHHhhhhhcccccchhhhhhhhhcccCCCcccccccccccccCCCCCCccchhhhhhhhh
Q 002667 90 RNLCQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRTYDSELVNLVSR 169 (895)
Q Consensus 90 rkLc~~L~d~dEWgQv~iL~lL~rY~r~~~~~~~ps~~f~~~~~~~~~~~e~~~~~~~~l~~q~~~~~~~~~~~~~~~~~ 169 (895)
..|+..|.+-+++.+..++..|..-.. . +
T Consensus 120 ~~L~~~L~~~~p~vR~aal~al~~r~~-~-----~--------------------------------------------- 148 (410)
T TIGR02270 120 PWLEPLLAASEPPGRAIGLAALGAHRH-D-----P--------------------------------------------- 148 (410)
T ss_pred HHHHHHhcCCChHHHHHHHHHHHhhcc-C-----h---------------------------------------------
Confidence 779999999999999888877765210 0 0
Q ss_pred hcccccccccccCCCcccccccccCccccCCCCChhHHHHHHhhhhhccCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002667 170 SYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSPKEDVKRIVKPLL 249 (895)
Q Consensus 170 ~~~~~~d~~~~~s~~~~~~~~~~~~~~~~~~~~d~D~~lLL~~~~pLLqS~NsAVVlaaa~l~~~lap~~~l~~~~~pLv 249 (895)
...+.++|++.++.|--+++++.-.+.... ....|.
T Consensus 149 ----------------------------------------~~~L~~~L~d~d~~Vra~A~raLG~l~~~~----a~~~L~ 184 (410)
T TIGR02270 149 ----------------------------------------GPALEAALTHEDALVRAAALRALGELPRRL----SESTLR 184 (410)
T ss_pred ----------------------------------------HHHHHHHhcCCCHHHHHHHHHHHHhhcccc----chHHHH
Confidence 123566778899999999999876665432 333455
Q ss_pred HHhcC-CCcchHHHHHHHHHHHHhCCcccccccccceeccCCcHHHHHHHHHHHHhhcCCCCHHHHHHHHHHhhccCChh
Q 002667 250 FILRS-SGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKLEILSSIVTESSISSVFKEFQDYIRDPDRR 328 (895)
Q Consensus 250 ~LL~s-~~eiqyvvL~~I~~i~~~~p~lF~~~l~~Ffi~~sDp~~IK~lKLeIL~~Lane~Nv~~IL~EL~~Yv~~~D~e 328 (895)
..+.+ +++|+..++..+..+-. +.... .+..|+-...-| ....-..+|...-++ .++.-|...+.+.+
T Consensus 185 ~al~d~~~~VR~aA~~al~~lG~--~~A~~-~l~~~~~~~g~~--~~~~l~~~lal~~~~----~a~~~L~~ll~d~~-- 253 (410)
T TIGR02270 185 LYLRDSDPEVRFAALEAGLLAGS--RLAWG-VCRRFQVLEGGP--HRQRLLVLLAVAGGP----DAQAWLRELLQAAA-- 253 (410)
T ss_pred HHHcCCCHHHHHHHHHHHHHcCC--HhHHH-HHHHHHhccCcc--HHHHHHHHHHhCCch----hHHHHHHHHhcChh--
Confidence 55654 68999999988866632 33322 333344333222 332223344433222 56666666666543
Q ss_pred HHHHHHHHHHHHHhhCcchHHHHHHHHHHHHH
Q 002667 329 FAADTVAAIGLCARKLPKMANTCVEGLLALIR 360 (895)
Q Consensus 329 f~~~aI~AIG~~A~~~p~~a~~cl~~Ll~LLs 360 (895)
+...++.++|.+.. |. .+.+|+.++.
T Consensus 254 vr~~a~~AlG~lg~--p~----av~~L~~~l~ 279 (410)
T TIGR02270 254 TRREALRAVGLVGD--VE----AAPWCLEAMR 279 (410)
T ss_pred hHHHHHHHHHHcCC--cc----hHHHHHHHhc
Confidence 78889999997653 33 4455666554
No 55
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=94.55 E-value=0.09 Score=48.99 Aligned_cols=67 Identities=25% Similarity=0.224 Sum_probs=55.5
Q ss_pred cchhhhHHHHHHHHhhcCCCCchhhHHHHHHHHHHhccCCcc---hhHHHHHHHHHHhcCCChhHHHHHH
Q 002667 5 RLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEE---ITSAIEEIVGILLNDRSPGVVGAAA 71 (895)
Q Consensus 5 Rv~~I~piv~~aIkk~l~D~SPYVRK~AA~AI~Kly~ld~pd---~~~~L~eil~~LL~D~~p~VvgsAv 71 (895)
++..-++-++++|-+|+.|.++=||-.|+.|+..+-+....+ ...++.+.|.+++.|.++.|-.+|-
T Consensus 20 ~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a~ 89 (97)
T PF12755_consen 20 DISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDENVRSAAE 89 (97)
T ss_pred hHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHH
Confidence 456677888999999999999999999999999988775233 4567777888999999999988773
No 56
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=94.48 E-value=1.4 Score=48.95 Aligned_cols=123 Identities=18% Similarity=0.242 Sum_probs=87.4
Q ss_pred HHHHHHH-HhhccCChhHHHHHHHHHHHHHhhCcchHHHHHHHHHHHHHhhhccccccCCCCCCchhhhHHHHHHHHHhh
Q 002667 313 SVFKEFQ-DYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQ 391 (895)
Q Consensus 313 ~IL~EL~-~Yv~~~D~ef~~~aI~AIG~~A~~~p~~a~~cl~~Ll~LLs~~~~~~~~~~~~~~~~vv~E~V~vik~Llq~ 391 (895)
.+++.|. -.+++.|..++..+++++|.|+.--.+.+...+..++..++. +++.+-..++.+|.+|+..
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~-----------~~~~v~~~al~~l~Dll~~ 94 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQK-----------DDEEVKITALKALFDLLLT 94 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHh-----------CCHHHHHHHHHHHHHHHHH
Confidence 7777766 466788899999999999999999999999999999988852 2333445566677777776
Q ss_pred CCcchHHHHHHHHHhhhccCchhhHHhhhhhhccccCCCCCccchHHHHHHHHHHhhccCcHHHHHHHHHHHHHHhhhcC
Q 002667 392 DPSCHEKVIIQLFRSLDSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAK 471 (895)
Q Consensus 392 ~P~~~~~ii~~L~~~ld~i~~p~ArAsIiWLLGEY~~~~e~ip~ia~dvLr~l~k~F~~E~~~VKlqILtaaaKL~~~~p 471 (895)
|... .++....+. + .. ....+++.+.+-+..+..+++..+....+||++...
T Consensus 95 ~g~~----------~~~~~~~~~----------~------~~--~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~ 146 (298)
T PF12719_consen 95 HGID----------IFDSESDND----------E------SV--DSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGR 146 (298)
T ss_pred cCch----------hccchhccC----------c------cc--hHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCC
Confidence 6531 122211111 1 11 134667777777777788999999999999999875
Q ss_pred CCC
Q 002667 472 GGD 474 (895)
Q Consensus 472 ~e~ 474 (895)
-..
T Consensus 147 i~~ 149 (298)
T PF12719_consen 147 ISD 149 (298)
T ss_pred CCc
Confidence 433
No 57
>smart00809 Alpha_adaptinC2 Adaptin C-terminal domain. Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. Gamma-adaptin is a subunit of the golgi adaptor. Alpha adaptin is a heterotetramer that regulates clathrin-bud formation. The carboxyl-terminal appendage of the alpha subunit regulates translocation of endocytic accessory proteins to the bud site. This Ig-fold domain is found in alpha, beta and gamma adaptins and consists of a beta-sandwich containing 7 strands in 2 beta-sheets in a greek-key topology PUBMED:10430869, PUBMED:12176391. The adaptor appendage contains an additional N-terminal strand.
Probab=94.43 E-value=0.38 Score=44.56 Aligned_cols=84 Identities=24% Similarity=0.396 Sum_probs=55.8
Q ss_pred CCCCeeEEEEecCCCCCCCCCeEEEEEEEEeCCCCceeeeEeecccccchhhhhhhhhhhccccccCCCCCCCcccCCcc
Q 002667 738 NGNGLKVYYSFSSEASTISPQLVCLETFFENCSSETMSEVTLVDEESHKALDLADLTLATTASSLTSQSDLPTLVPMEEI 817 (895)
Q Consensus 738 ~g~GL~v~Y~f~r~p~~~~~~mv~v~l~f~N~s~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~i 817 (895)
.++||.|.|++.|.+ ..+.|.++|.|.+..+|+++.+.=- .|.++... +.+...
T Consensus 3 ~~~~l~I~~~~~~~~-----~~~~i~~~~~N~s~~~it~f~~~~a----vpk~~~l~----------------l~~~s~- 56 (104)
T smart00809 3 EKNGLQIGFKFERRP-----GLIRITLTFTNKSPSPITNFSFQAA----VPKSLKLQ----------------LQPPSS- 56 (104)
T ss_pred cCCCEEEEEEEEcCC-----CeEEEEEEEEeCCCCeeeeEEEEEE----cccceEEE----------------EcCCCC-
Confidence 367999999999874 4689999999999999999998542 23343211 222211
Q ss_pred cccCCCCeeEEEEEEecCCC-CccceEEEEE
Q 002667 818 TSLEPGQTMKRILEVRFHHH-LLPLKLALHC 847 (895)
Q Consensus 818 ~~l~p~~~~~~~~~i~f~~~-~~~~~~~l~~ 847 (895)
..|+||+.++-.|.|.=... ..++++.+..
T Consensus 57 ~~l~p~~~i~q~~~i~~~~~~~~~~~~~vsy 87 (104)
T smart00809 57 PTLPPGGQITQVLKVENPGKFPLRLRLRLSY 87 (104)
T ss_pred CccCCCCCEEEEEEEECCCCCCEEEEEEEEE
Confidence 46899998887777743221 2344555543
No 58
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=94.03 E-value=6.7 Score=46.87 Aligned_cols=130 Identities=15% Similarity=0.228 Sum_probs=93.0
Q ss_pred hhccCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHHhCCccccc---ccccceeccCC
Q 002667 215 PLLWSHNSAVVLAAAGVHWIMSPKEDVKRIVKPLLFILRS-SGASKYVVLCNIQVFAKALPHLFVP---HYEDFFVSSSD 290 (895)
Q Consensus 215 pLLqS~NsAVVlaaa~l~~~lap~~~l~~~~~pLv~LL~s-~~eiqyvvL~~I~~i~~~~p~lF~~---~l~~Ffi~~sD 290 (895)
.|+...|-.+-+=|+...+--+..+.+.++++-+..++.. +.+-+.++.+.+..++...|.--.. |+-...|. .-
T Consensus 347 sLIsd~Nr~IstyAITtLLKTGt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~s~l~FL~~~L~~-eG 425 (898)
T COG5240 347 SLISDENRTISTYAITTLLKTGTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKLSYLDFLGSSLLQ-EG 425 (898)
T ss_pred HHhhcccccchHHHHHHHHHcCchhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHHHHHHHHHHHHHHh-cc
Confidence 3445556555555666666777778899999988888875 6788999999999999988853322 22222222 22
Q ss_pred cHHHHHHHHHHHHhhcC--CCCHHHHHHHHHHhhccCChhHHHHHHHHHHHHHhhCcch
Q 002667 291 SYQSKALKLEILSSIVT--ESSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKM 347 (895)
Q Consensus 291 p~~IK~lKLeIL~~Lan--e~Nv~~IL~EL~~Yv~~~D~ef~~~aI~AIG~~A~~~p~~ 347 (895)
-...|+..+|.|..+.. ++.-+.+|++|-+|+.|. ++-.-+++-+|.++.-.|..
T Consensus 426 g~eFK~~~Vdaisd~~~~~p~skEraLe~LC~fIEDc--ey~~I~vrIL~iLG~EgP~a 482 (898)
T COG5240 426 GLEFKKYMVDAISDAMENDPDSKERALEVLCTFIEDC--EYHQITVRILGILGREGPRA 482 (898)
T ss_pred cchHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHhhc--chhHHHHHHHHHhcccCCCC
Confidence 35678888888877653 467789999999999854 57777888888888877654
No 59
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=93.83 E-value=0.23 Score=52.38 Aligned_cols=145 Identities=14% Similarity=0.134 Sum_probs=92.3
Q ss_pred HHHHHHhhhhhccCCChHHHHHHHHHHHhcCC------HHHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHHhCCcccc
Q 002667 206 VKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSP------KEDVKRIVKPLLFILRS-SGASKYVVLCNIQVFAKALPHLFV 278 (895)
Q Consensus 206 ~~lLL~~~~pLLqS~NsAVVlaaa~l~~~lap------~~~l~~~~~pLv~LL~s-~~eiqyvvL~~I~~i~~~~p~lF~ 278 (895)
++.++..+...+.+.+++|+-.|+.++-.++. ...+..++.+|+..+.+ ..-++-.+-..|..|+...+ +.
T Consensus 51 l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~--~~ 128 (228)
T PF12348_consen 51 LRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCS--YS 128 (228)
T ss_dssp HH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS---H-
T ss_pred HHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCC--cH
Confidence 44556778888999999999999887655542 23467778888888765 45678888888888888666 11
Q ss_pred ccc--ccceeccCC-cHHHHHHHHHHHHhhcCCCC-----------HHHHHHHHHHhhccCChhHHHHHHHHHHHHHhhC
Q 002667 279 PHY--EDFFVSSSD-SYQSKALKLEILSSIVTESS-----------ISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKL 344 (895)
Q Consensus 279 ~~l--~~Ffi~~sD-p~~IK~lKLeIL~~Lane~N-----------v~~IL~EL~~Yv~~~D~ef~~~aI~AIG~~A~~~ 344 (895)
+.+ ..+....++ ...+|..-++.|..+.+.-+ +..|++-+...+.|.+.+.+..+-+++..+...+
T Consensus 129 ~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~ 208 (228)
T PF12348_consen 129 PKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHF 208 (228)
T ss_dssp -HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC
Confidence 221 111212233 36799999999999877666 3568888888999999999999999999998888
Q ss_pred cchHHHHH
Q 002667 345 PKMANTCV 352 (895)
Q Consensus 345 p~~a~~cl 352 (895)
|.-+...+
T Consensus 209 ~~~a~~~~ 216 (228)
T PF12348_consen 209 PERAESIL 216 (228)
T ss_dssp -HHH----
T ss_pred CHhhccch
Confidence 88876655
No 60
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=93.79 E-value=17 Score=43.69 Aligned_cols=220 Identities=15% Similarity=0.164 Sum_probs=126.7
Q ss_pred ChHHHHHHHHHH----HhcCCH---------HHHHHHHHHHHH---HhcCCCcchHHHHHHHHHHHHhCCcccccccccc
Q 002667 221 NSAVVLAAAGVH----WIMSPK---------EDVKRIVKPLLF---ILRSSGASKYVVLCNIQVFAKALPHLFVPHYEDF 284 (895)
Q Consensus 221 NsAVVlaaa~l~----~~lap~---------~~l~~~~~pLv~---LL~s~~eiqyvvL~~I~~i~~~~p~lF~~~l~~F 284 (895)
++=++.+|...+ .|+++. .....+++.|+. +..+..+.|-.....+-+|+...|+...+-+..|
T Consensus 463 ~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~a~~ 542 (858)
T COG5215 463 CPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPDAVSDILAGF 542 (858)
T ss_pred cchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHHHHH
Confidence 455666665544 344442 123456666653 2234677888888888888888899888888777
Q ss_pred eeccCCcHHHHHHHHHH----HH-hhcCCCCHHHHHHHHHH-hhccCChhHHHHHHHHHHHHHhhCcchHHHHHHHHHHH
Q 002667 285 FVSSSDSYQSKALKLEI----LS-SIVTESSISSVFKEFQD-YIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLAL 358 (895)
Q Consensus 285 fi~~sDp~~IK~lKLeI----L~-~Lane~Nv~~IL~EL~~-Yv~~~D~ef~~~aI~AIG~~A~~~p~~a~~cl~~Ll~L 358 (895)
| .+-..||+- +. .|++++- ..++||+. |+. +....|+.- ..-+..+.+..+..++++
T Consensus 543 ~-------~~~~~kl~~~isv~~q~l~~eD~--~~~~elqSN~~~-----vl~aiir~~---~~~ie~v~D~lm~Lf~r~ 605 (858)
T COG5215 543 Y-------DYTSKKLDECISVLGQILATEDQ--LLVEELQSNYIG-----VLEAIIRTR---RRDIEDVEDQLMELFIRI 605 (858)
T ss_pred H-------HHHHHHHHHHHHHhhhhhhhHHH--HHHHHHHHHHHH-----HHHHHHHhc---CCCcccHHHHHHHHHHHH
Confidence 5 244455542 22 1333332 23777765 433 222222222 123567888999999999
Q ss_pred HHhhhccccccCCCCCCchhhh-HHHHHHHHHhhCCcc----hHHHHHHHHHhhhccCchhhHHhhhhhhccccCCC-CC
Q 002667 359 IRQELLTSDIESGNGEADVLIQ-SIISIKSIIKQDPSC----HEKVIIQLFRSLDSIKVPEARVMIIWMVGEYSSVG-VK 432 (895)
Q Consensus 359 Ls~~~~~~~~~~~~~~~~vv~E-~V~vik~Llq~~P~~----~~~ii~~L~~~ld~i~~p~ArAsIiWLLGEY~~~~-e~ 432 (895)
|... +..++-+ ....|-.+...-.+. ..+.+..|.+.+ +.++.....+.+=++|.-++.. ++
T Consensus 606 les~-----------~~t~~~~dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~al-n~~d~~v~~~avglvgdlantl~~d 673 (858)
T COG5215 606 LEST-----------KPTTAFGDVYTAISALSTSLEERFEQYASKFIPYLTRAL-NCTDRFVLNSAVGLVGDLANTLGTD 673 (858)
T ss_pred Hhcc-----------CCchhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHh-cchhHHHHHHHHHHHHHHHHHhhhh
Confidence 9741 1222222 223444443322222 345677777777 4555556666688888876532 22
Q ss_pred ccchHHHHHHHHHHhhccCc--HHHHHHHHHHHHHHhhh
Q 002667 433 IPRMLTTVLKYLAWCFKSEA--VETKLQILNTTIKVLLC 469 (895)
Q Consensus 433 ip~ia~dvLr~l~k~F~~E~--~~VKlqILtaaaKL~~~ 469 (895)
+-..+.++...++.....+. ..+|-.||..+.-+.+.
T Consensus 674 f~~y~d~~ms~LvQ~lss~~~~R~lKPaiLSvFgDIAla 712 (858)
T COG5215 674 FNIYADVLMSSLVQCLSSEATHRDLKPAILSVFGDIALA 712 (858)
T ss_pred HHHHHHHHHHHHHHHhcChhhccccchHHHHHHHHHHHH
Confidence 22235666677777776663 57899999887776554
No 61
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=93.75 E-value=9.5 Score=45.99 Aligned_cols=462 Identities=17% Similarity=0.132 Sum_probs=227.8
Q ss_pred hHHHHHHHHhhcCCCCchhhHHHHHHHHHHhccCCcchhHHHHHHHHHHh---cCCChhHHHHHHHHHHHhCCCC----c
Q 002667 10 SPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILL---NDRSPGVVGAAAAAFASICPNN----F 82 (895)
Q Consensus 10 ~piv~~aIkk~l~D~SPYVRK~AA~AI~Kly~ld~pd~~~~L~eil~~LL---~D~~p~VvgsAv~Af~EIcP~r----~ 82 (895)
+..++.+|++|+.|.+-+||=-+|+|+.-++.+..|=-.+++.+++.-|- +-.---++.+-+.|.--|.|-. .
T Consensus 356 l~~l~~ci~~~l~D~~~~vRi~tA~alS~lae~~~Pygie~fd~vl~pLw~g~~~hrgk~l~sfLkA~g~iiplm~peYa 435 (975)
T COG5181 356 LGPLLKCISKLLKDRSRFVRIDTANALSYLAELVGPYGIEQFDEVLCPLWEGASQHRGKELVSFLKAMGFIIPLMSPEYA 435 (975)
T ss_pred hhhHHHHHHHHhhccceeeeehhHhHHHHHHHhcCCcchHHHHHHHHHHHHHHHhcCCchHHHHHHHhccccccCChHhh
Confidence 45578999999999999999999999999999854777777777766543 2233345555555554443311 0
Q ss_pred -cchHHHHHHHHHhCCCCChhhHHHHHHHHHhhhhhcccccchh--------hhhhhhhcccCCCcccccccccccccCC
Q 002667 83 -TLIGRNYRNLCQILPDVEEWGQILLIEILLRYVVASHGLVKES--------IMSSLLCIESSHSEKDVFDVNVALEDNG 153 (895)
Q Consensus 83 -dLihk~yrkLc~~L~d~dEWgQv~iL~lL~rY~r~~~~~~~ps--------~~f~~~~~~~~~~~e~~~~~~~~l~~q~ 153 (895)
-....|.+-+.+.+..-||=+.-.++-++.......+ ..|. +.|...+.+....+. . .-+|+
T Consensus 436 ~h~tre~m~iv~ref~spdeemkk~~l~v~~~C~~v~~--~tp~~lr~~v~pefF~~fw~rr~A~dr-----~--~~k~v 506 (975)
T COG5181 436 CHDTREHMEIVFREFKSPDEEMKKDLLVVERICDKVGT--DTPWKLRDQVSPEFFSPFWRRRSAGDR-----R--SYKQV 506 (975)
T ss_pred hhhHHHHHHHHHHHhCCchhhcchhHHHHHHHHhccCC--CCHHHHHHhhcHHhhchHHHhhhcccc-----c--cccee
Confidence 0112233444455555566555555555444332210 1111 122222222110000 0 00110
Q ss_pred CCCCccchhhhhhhhhhc-ccccccccccCCCcccccccccCc-------cccCCCCCh-hHHHHHHhhhhhccCCCh--
Q 002667 154 IPSRTYDSELVNLVSRSY-IEGLGEYLTRSSDTNARSSDLNGA-------RFTSGKTND-DVKLLLQCTSPLLWSHNS-- 222 (895)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~-~~~~d~~~~~s~~~~~~~~~~~~~-------~~~~~~~d~-D~~lLL~~~~pLLqS~Ns-- 222 (895)
. -+....+.+..-.+ ++..=+++ +|...++...+.. .-....+|+ -..+|++++.--+|....
T Consensus 507 ~---~ttvilAk~~g~~~v~~kil~~~---~De~ep~r~m~a~~vsri~~~lg~~~~dErleerl~d~il~Afqeq~~t~ 580 (975)
T COG5181 507 V---LTTVILAKMGGDPRVSRKILEYY---SDEPEPYRKMNAGLVSRIFSRLGRLGFDERLEERLYDSILNAFQEQDTTV 580 (975)
T ss_pred e---hhHHHHHHHcCChHHHHHHHhhc---cCCcchhhhhhhHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhccccc
Confidence 0 00011111110000 00000011 1111111111100 000112344 346788888888886654
Q ss_pred HHHHHHHHHHH-hcC--CHHHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHH--hCCccccc--ccc-cceec-cCCcH
Q 002667 223 AVVLAAAGVHW-IMS--PKEDVKRIVKPLLFILRS-SGASKYVVLCNIQVFAK--ALPHLFVP--HYE-DFFVS-SSDSY 292 (895)
Q Consensus 223 AVVlaaa~l~~-~la--p~~~l~~~~~pLv~LL~s-~~eiqyvvL~~I~~i~~--~~p~lF~~--~l~-~Ffi~-~sDp~ 292 (895)
++++-|..+.. .+. -+..+..++...+.+|++ +|+++.-+++.+..|+. +.-+-|.. ++. ..|-. -.|-+
T Consensus 581 ~~il~~f~tv~vsl~~r~kp~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~lge~yp 660 (975)
T COG5181 581 GLILPCFSTVLVSLEFRGKPHLSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYENLGEDYP 660 (975)
T ss_pred cEEEecccceeeehhhccCcchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHhcCcccH
Confidence 45665433321 111 123466778888888886 68888877776555543 21111111 111 12211 12222
Q ss_pred HHHHHHHHHHHhhcCC---C----CHHHHHHHHHHhhccCChhHHHHHHHHHHHHHhhCcchH------HHHHHHHHHHH
Q 002667 293 QSKALKLEILSSIVTE---S----SISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMA------NTCVEGLLALI 359 (895)
Q Consensus 293 ~IK~lKLeIL~~Lane---~----Nv~~IL~EL~~Yv~~~D~ef~~~aI~AIG~~A~~~p~~a------~~cl~~Ll~LL 359 (895)
.+----|.-++.+.+- . -+..|+.-|.--+++-...++..+|.-+|.+|.+-|+.+ ..|. .|+++|
T Consensus 661 EvLgsil~Ai~~I~sv~~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcf-eLvd~L 739 (975)
T COG5181 661 EVLGSILKAICSIYSVHRFRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICF-ELVDSL 739 (975)
T ss_pred HHHHHHHHHHHHHhhhhcccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHH-HHHHHH
Confidence 2433444444544442 2 466788888888888888899999999999999988744 2333 244444
Q ss_pred HhhhccccccCCCCC-CchhhhHHHHHHHHHhhCCcchHHHHHHHHHhhhccCchh---hHHhhhhhhccccCCCCCccc
Q 002667 360 RQELLTSDIESGNGE-ADVLIQSIISIKSIIKQDPSCHEKVIIQLFRSLDSIKVPE---ARVMIIWMVGEYSSVGVKIPR 435 (895)
Q Consensus 360 s~~~~~~~~~~~~~~-~~vv~E~V~vik~Llq~~P~~~~~ii~~L~~~ld~i~~p~---ArAsIiWLLGEY~~~~e~ip~ 435 (895)
..- |.+ .--..++.-.|..+| .| ..++..|.+.|.. ++-. .-+..|-++||||..-
T Consensus 740 ks~---------nKeiRR~A~~tfG~Is~ai--GP---qdvL~~LlnnLkv-qeRq~RvctsvaI~iVae~cgpf----- 799 (975)
T COG5181 740 KSW---------NKEIRRNATETFGCISRAI--GP---QDVLDILLNNLKV-QERQQRVCTSVAISIVAEYCGPF----- 799 (975)
T ss_pred HHh---------hHHHHHhhhhhhhhHHhhc--CH---HHHHHHHHhcchH-HHHHhhhhhhhhhhhhHhhcCch-----
Confidence 320 000 000111111111111 23 2344444444431 1111 1223368999999532
Q ss_pred hHHHHHHHHHHhhccCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHccCCChHHHhHHHHH-HHHccCC
Q 002667 436 MLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTITRLFSYLLELAECDLNYDVRDRARFF-KKLFSHN 511 (895)
Q Consensus 436 ia~dvLr~l~k~F~~E~~~VKlqILtaaaKL~~~~p~e~~~~l~~L~qyvL~la~~D~n~DVRDRAr~y-~~LL~~~ 511 (895)
.||-.+...|.+-...|+--+|.+++-+|-+-.+...+-+.-+. =+|+=|..|.|+--|+-|--. +.|.-++
T Consensus 800 ---sVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s~dYvy~it-PlleDAltDrD~vhRqta~nvI~Hl~Lnc 872 (975)
T COG5181 800 ---SVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQASLDYVYSIT-PLLEDALTDRDPVHRQTAMNVIRHLVLNC 872 (975)
T ss_pred ---hhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhh-HHHHhhhcccchHHHHHHHHHHHHHhcCC
Confidence 23444566888888889999999999887554321111111111 134556678887777766543 3443333
No 62
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=93.61 E-value=28 Score=46.09 Aligned_cols=206 Identities=13% Similarity=0.144 Sum_probs=129.3
Q ss_pred HHHHHHHHHHhh--cCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHHHhhCc-chHHHHHHHHHHHHHhhhccccccC
Q 002667 294 SKALKLEILSSI--VTESSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLP-KMANTCVEGLLALIRQELLTSDIES 370 (895)
Q Consensus 294 IK~lKLeIL~~L--ane~Nv~~IL~EL~~Yv~~~D~ef~~~aI~AIG~~A~~~p-~~a~~cl~~Ll~LLs~~~~~~~~~~ 370 (895)
++..=-+|++.| +.+.-+-.|+.+|..-+.+.+.+++.+|+.-+|++-.... ...++.-+++..+|.. +
T Consensus 238 ~~~~~he~i~~L~~~~p~ll~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r-~------- 309 (1266)
T KOG1525|consen 238 LKIKYHELILELWRIAPQLLLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGR-F------- 309 (1266)
T ss_pred hhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHH-h-------
Confidence 344444555544 3345556688888888888899999999999998754332 2223444455555542 1
Q ss_pred CCCCCchhhhHHHHHHHHHhhCCcchHHHHHHHHHhhhccCchhhHHhhhhhhccccCCCC-CccchHHHHHHHHHHhhc
Q 002667 371 GNGEADVLIQSIISIKSIIKQDPSCHEKVIIQLFRSLDSIKVPEARVMIIWMVGEYSSVGV-KIPRMLTTVLKYLAWCFK 449 (895)
Q Consensus 371 ~~~~~~vv~E~V~vik~Llq~~P~~~~~ii~~L~~~ld~i~~p~ArAsIiWLLGEY~~~~e-~ip~ia~dvLr~l~k~F~ 449 (895)
.+....|-.++|-.+++++..+|.........++-.... .++..|....-+++.-.- .. .... .+++|..+.++-.
T Consensus 310 ~D~~~~vR~~~v~~~~~~l~~~~~~~~~~~~~~~l~~~~-~D~~~rir~~v~i~~~~v-~~~~l~~-~~~ll~~~~eR~r 386 (1266)
T KOG1525|consen 310 NDISVEVRMECVESIKQCLLNNPSIAKASTILLALRERD-LDEDVRVRTQVVIVACDV-MKFKLVY-IPLLLKLVAERLR 386 (1266)
T ss_pred ccCChhhhhhHHHHhHHHHhcCchhhhHHHHHHHHHhhc-CChhhhheeeEEEEEeeh-hHhhhhh-hHHHHHHHHHHHh
Confidence 022334667888899999999998765554444433222 234444443444443211 01 1122 3447777777777
Q ss_pred cCcHHHHHHHHHHHHHHhhh--c-CCCC-------h---------------HHHHHHHHHHHHHHccCCChHHHhHHHHH
Q 002667 450 SEAVETKLQILNTTIKVLLC--A-KGGD-------M---------------WTITRLFSYLLELAECDLNYDVRDRARFF 504 (895)
Q Consensus 450 ~E~~~VKlqILtaaaKL~~~--~-p~e~-------~---------------~~l~~L~qyvL~la~~D~n~DVRDRAr~y 504 (895)
+-...||.+.++-++++|-+ . ..++ . ...+.++.++|.......+.++++|-+-+
T Consensus 387 DKk~~VR~~Am~~LaqlYk~~~~~~~~~~k~~t~~~swIp~kLL~~~y~~~~~~r~~vE~il~~~L~P~~l~~q~Rmk~l 466 (1266)
T KOG1525|consen 387 DKKIKVRKQAMNGLAQLYKNVYCLRSAGGKEITPPFSWIPDKLLHLYYENDLDDRLLVERILAEYLVPYPLSTQERMKHL 466 (1266)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhccCcccccccccccchhHHhhHhhccccHHHHHHHHHHHhhCCCCCCHHHHHHHH
Confidence 77889999999999999985 1 1100 0 01235566777777788899999999999
Q ss_pred HHHccC
Q 002667 505 KKLFSH 510 (895)
Q Consensus 505 ~~LL~~ 510 (895)
+.++..
T Consensus 467 ~~~l~~ 472 (1266)
T KOG1525|consen 467 YQLLAG 472 (1266)
T ss_pred HHHHhc
Confidence 988865
No 63
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=93.52 E-value=16 Score=45.08 Aligned_cols=76 Identities=22% Similarity=0.278 Sum_probs=58.5
Q ss_pred CccchhhhHHHHHHHHhhcCCCCchhhHHHHHHHHHHhcc---CCcc-hhHHHHHHHHHHhcCCChhHHHHHHHHHHHhC
Q 002667 3 GIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHEL---RQEE-ITSAIEEIVGILLNDRSPGVVGAAAAAFASIC 78 (895)
Q Consensus 3 sIRv~~I~piv~~aIkk~l~D~SPYVRK~AA~AI~Kly~l---d~pd-~~~~L~eil~~LL~D~~p~VvgsAv~Af~EIc 78 (895)
+.|+.--+|.+.-.|.+-++.++|-||-.||--|..+-.. .+.+ ....+--+|..-|....|-|+|+.+.|+..|+
T Consensus 790 g~r~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~ 869 (1172)
T KOG0213|consen 790 GGRVKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIV 869 (1172)
T ss_pred hhccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHH
Confidence 4678888899999999999999999999999887766554 3122 23334456666678889999999888887765
No 64
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=93.26 E-value=5.4 Score=47.95 Aligned_cols=110 Identities=22% Similarity=0.179 Sum_probs=83.2
Q ss_pred cchhhhHHHHHHHHhhcCCCCchhhHHHHHHHHHHhc-cCCcc-hhHHHHHHHHHHhcC--CChhHHHHHHHHHHHhCCC
Q 002667 5 RLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHE-LRQEE-ITSAIEEIVGILLND--RSPGVVGAAAAAFASICPN 80 (895)
Q Consensus 5 Rv~~I~piv~~aIkk~l~D~SPYVRK~AA~AI~Kly~-ld~pd-~~~~L~eil~~LL~D--~~p~VvgsAv~Af~EIcP~ 80 (895)
+-|-|+|+ ++.|-.|..|..++||.+|.+|+--+-+ +. +. -+..|...|..++.+ ++.+.+...+-++.++-|.
T Consensus 210 ~EPyiv~~-lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~-~~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~ 287 (569)
T KOG1242|consen 210 FEPYIVPI-LPSILTNFGDKINKVREAAVEAAKAIMRCLS-AYAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPK 287 (569)
T ss_pred CCchHHhh-HHHHHHHhhccchhhhHHHHHHHHHHHHhcC-cchhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchH
Confidence 44555554 5678889999999999999888766544 33 33 455566677777777 7888888888888888888
Q ss_pred CccchHH-HHHHHHHhCCCCChhhHHHHHHHHHhhhh
Q 002667 81 NFTLIGR-NYRNLCQILPDVEEWGQILLIEILLRYVV 116 (895)
Q Consensus 81 r~dLihk-~yrkLc~~L~d~dEWgQv~iL~lL~rY~r 116 (895)
-+++.-+ .++.|-..|-|..+=-|-.-+..|++|+.
T Consensus 288 qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~s 324 (569)
T KOG1242|consen 288 QLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGS 324 (569)
T ss_pred HHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 7766443 57888888888888888888888888874
No 65
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=92.83 E-value=0.71 Score=40.75 Aligned_cols=84 Identities=19% Similarity=0.163 Sum_probs=57.4
Q ss_pred HHHHHHhhhccCchhhHHhhhhhhccccCCCCCccchHHHHHHHHHHhhccCcHHHHHHHHHHHHHHhhhcCCCChHHHH
Q 002667 400 IIQLFRSLDSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTIT 479 (895)
Q Consensus 400 i~~L~~~ld~i~~p~ArAsIiWLLGEY~~~~e~ip~ia~dvLr~l~k~F~~E~~~VKlqILtaaaKL~~~~p~e~~~~l~ 479 (895)
|..|.+.+.+-.++..|..++|.+|++++ ++++..+.+-+.++...||.+.+.++.++- . .
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~---------~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~--~--------~ 61 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGD---------PEAIPALIELLKDEDPMVRRAAARALGRIG--D--------P 61 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTH---------HHHHHHHHHHHTSSSHHHHHHHHHHHHCCH--H--------H
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCC---------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhC--C--------H
Confidence 34566777666678999999999998863 234445555557888999999999999872 1 2
Q ss_pred HHHHHHHHHHccCCChHHHhHHH
Q 002667 480 RLFSYLLELAECDLNYDVRDRAR 502 (895)
Q Consensus 480 ~L~qyvL~la~~D~n~DVRDRAr 502 (895)
+.++.+.++...|.+..||.-|-
T Consensus 62 ~~~~~L~~~l~~~~~~~vr~~a~ 84 (88)
T PF13646_consen 62 EAIPALIKLLQDDDDEVVREAAA 84 (88)
T ss_dssp HTHHHHHHHHTC-SSHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcHHHHHHHH
Confidence 23444455555666777776554
No 66
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=92.75 E-value=8.9 Score=44.84 Aligned_cols=89 Identities=16% Similarity=-0.019 Sum_probs=69.0
Q ss_pred HHHHHHhhcCCCCchhhHHHHHHHHHHhccCCcchhHHHHHHHHHHhcCCChhHHHHHHHHHHHhCCCCccchHHHHHHH
Q 002667 13 VLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNNFTLIGRNYRNL 92 (895)
Q Consensus 13 v~~aIkk~l~D~SPYVRK~AA~AI~Kly~ld~pd~~~~L~eil~~LL~D~~p~VvgsAv~Af~EIcP~r~dLihk~yrkL 92 (895)
++.++.+++.|..+-||..||-|+.++.. +.....|..+|.|.+|.|-.+++.++....++ .+..|
T Consensus 87 ~~~~L~~~L~d~~~~vr~aaa~ALg~i~~-------~~a~~~L~~~L~~~~p~vR~aal~al~~r~~~-------~~~~L 152 (410)
T TIGR02270 87 DLRSVLAVLQAGPEGLCAGIQAALGWLGG-------RQAEPWLEPLLAASEPPGRAIGLAALGAHRHD-------PGPAL 152 (410)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhcCCc-------hHHHHHHHHHhcCCChHHHHHHHHHHHhhccC-------hHHHH
Confidence 47889999999999999999999997632 23455666788999999999888776653322 46678
Q ss_pred HHhCCCCChhhHHHHHHHHHhhh
Q 002667 93 CQILPDVEEWGQILLIEILLRYV 115 (895)
Q Consensus 93 c~~L~d~dEWgQv~iL~lL~rY~ 115 (895)
...|.+-+.--....+..|-...
T Consensus 153 ~~~L~d~d~~Vra~A~raLG~l~ 175 (410)
T TIGR02270 153 EAALTHEDALVRAAALRALGELP 175 (410)
T ss_pred HHHhcCCCHHHHHHHHHHHHhhc
Confidence 88888888888787887776654
No 67
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=92.33 E-value=21 Score=45.19 Aligned_cols=130 Identities=18% Similarity=0.183 Sum_probs=87.4
Q ss_pred CChhHHHHHHhhhhhccCCChHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHhcCC--CcchHHHHHHHHHHHHhCCcc
Q 002667 202 TNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMS---PKEDVKRIVKPLLFILRSS--GASKYVVLCNIQVFAKALPHL 276 (895)
Q Consensus 202 ~d~D~~lLL~~~~pLLqS~NsAVVlaaa~l~~~la---p~~~l~~~~~pLv~LL~s~--~eiqyvvL~~I~~i~~~~p~l 276 (895)
+-++|.-+|.+..|.|++.-.||.=-++.++-|++ +...+..++.-|++=|..+ +..--.-.+.|..|++....-
T Consensus 168 l~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r 247 (1233)
T KOG1824|consen 168 LPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRDLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHR 247 (1233)
T ss_pred CcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcch
Confidence 44578889999999999999999877777665553 4455667777777666433 222223345667777777777
Q ss_pred cccccccceeccCCcHHHHHHHHHHHHhhcCCCCHHHHHHHHHHhh---ccCChhHHHHHHHHHHHHHhhCcch----HH
Q 002667 277 FVPHYEDFFVSSSDSYQSKALKLEILSSIVTESSISSVFKEFQDYI---RDPDRRFAADTVAAIGLCARKLPKM----AN 349 (895)
Q Consensus 277 F~~~l~~Ffi~~sDp~~IK~lKLeIL~~Lane~Nv~~IL~EL~~Yv---~~~D~ef~~~aI~AIG~~A~~~p~~----a~ 349 (895)
|..|+.. |+.=+..|+ ...|++++...++|++..-.+-|.. ..
T Consensus 248 ~~~h~~~------------------------------ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~ei~p~~p 297 (1233)
T KOG1824|consen 248 FGSHLDK------------------------------IVPLVADYCNKIEEDDDELREYCLQALESFLRRCPKEILPHVP 297 (1233)
T ss_pred hhcccch------------------------------hhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhhhcccch
Confidence 7777532 122233455 5667889999999999888877653 34
Q ss_pred HHHHHHHHHHHh
Q 002667 350 TCVEGLLALIRQ 361 (895)
Q Consensus 350 ~cl~~Ll~LLs~ 361 (895)
.+++.+++.++.
T Consensus 298 ei~~l~l~yisY 309 (1233)
T KOG1824|consen 298 EIINLCLSYISY 309 (1233)
T ss_pred HHHHHHHHHhcc
Confidence 566666666664
No 68
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=91.78 E-value=1 Score=41.47 Aligned_cols=101 Identities=9% Similarity=0.104 Sum_probs=66.7
Q ss_pred HHHHHHHhhccCChhHHHHHHHHHHHHHhhCcchHH-----HHHHHHHHHHHhhhccccccCCCCCCchhhhHHHHHHHH
Q 002667 314 VFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMAN-----TCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSI 388 (895)
Q Consensus 314 IL~EL~~Yv~~~D~ef~~~aI~AIG~~A~~~p~~a~-----~cl~~Ll~LLs~~~~~~~~~~~~~~~~vv~E~V~vik~L 388 (895)
++..|..++.+.+.+.+..++.+++.++...|.... .++..++++|+. .+..+...++..+.+|
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~-----------~~~~v~~~a~~~L~~l 76 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKS-----------EDEEVVKAALWALRNL 76 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhC-----------CCHHHHHHHHHHHHHH
Confidence 455566677777788999999999999987665544 455677777763 2334666677788888
Q ss_pred HhhCCcchHH-----HHHHHHHhhhccCchhhHHhhhhhhccc
Q 002667 389 IKQDPSCHEK-----VIIQLFRSLDSIKVPEARVMIIWMVGEY 426 (895)
Q Consensus 389 lq~~P~~~~~-----ii~~L~~~ld~i~~p~ArAsIiWLLGEY 426 (895)
.+..|..... ++..|.+.++.- +...+...+|+++.-
T Consensus 77 ~~~~~~~~~~~~~~g~l~~l~~~l~~~-~~~~~~~a~~~l~~l 118 (120)
T cd00020 77 AAGPEDNKLIVLEAGGVPKLVNLLDSS-NEDIQKNATGALSNL 118 (120)
T ss_pred ccCcHHHHHHHHHCCChHHHHHHHhcC-CHHHHHHHHHHHHHh
Confidence 8766543222 355555555543 455666667877643
No 69
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.94 E-value=49 Score=40.92 Aligned_cols=314 Identities=17% Similarity=0.148 Sum_probs=176.7
Q ss_pred hhhhHHHHHHHHhhcCCCCchhhHHHHHHHHHHhccCCcchhHHHHHHHHHHh--cCCChhHHHHHHHHHHHhCCCCccc
Q 002667 7 HVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILL--NDRSPGVVGAAAAAFASICPNNFTL 84 (895)
Q Consensus 7 ~~I~piv~~aIkk~l~D~SPYVRK~AA~AI~Kly~ld~pd~~~~L~eil~~LL--~D~~p~VvgsAv~Af~EIcP~r~dL 84 (895)
.++.-.++.+||+-+...+|-----|.+||+-+=..+ ..+.+..-|.+|| .+..+.|--.|+.+|..+....-|+
T Consensus 106 ~dl~klvin~iknDL~srn~~fv~LAL~~I~niG~re---~~ea~~~DI~KlLvS~~~~~~vkqkaALclL~L~r~spDl 182 (938)
T KOG1077|consen 106 SDLMKLVINSIKNDLSSRNPTFVCLALHCIANIGSRE---MAEAFADDIPKLLVSGSSMDYVKQKAALCLLRLFRKSPDL 182 (938)
T ss_pred hHHHHHHHHHHHhhhhcCCcHHHHHHHHHHHhhccHh---HHHHhhhhhHHHHhCCcchHHHHHHHHHHHHHHHhcCccc
Confidence 4677789999999999999999999999999775543 5666777777888 4677888888888888887555555
Q ss_pred hHH--HHHHHHHhCCCCChhh----HHHHHHHHHhhhhhcccccchhhhhhhhhcccCCCcccccccccccccCCCCCCc
Q 002667 85 IGR--NYRNLCQILPDVEEWG----QILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRT 158 (895)
Q Consensus 85 ihk--~yrkLc~~L~d~dEWg----Qv~iL~lL~rY~r~~~~~~~ps~~f~~~~~~~~~~~e~~~~~~~~l~~q~~~~~~ 158 (895)
+.+ -+.+++.+|.|-+ .| -+.+|+.|..|-+.. |..+.. .+
T Consensus 183 ~~~~~W~~riv~LL~D~~-~gv~ta~~sLi~~lvk~~p~~---------yk~~~~-----------------~a------ 229 (938)
T KOG1077|consen 183 VNPGEWAQRIVHLLDDQH-MGVVTAATSLIEALVKKNPES---------YKTCLP-----------------LA------ 229 (938)
T ss_pred cChhhHHHHHHHHhCccc-cceeeehHHHHHHHHHcCCHH---------HhhhHH-----------------HH------
Confidence 544 3567777777766 55 455667776665421 111100 00
Q ss_pred cchhhhhhhhhhcccccccccccCCCcccccccccCccccCCCCChhHHHHHHhhhhhccCCChHHHHHHHHHHHhcCCH
Q 002667 159 YDSELVNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSPK 238 (895)
Q Consensus 159 ~~~~~~~~~~~~~~~~~d~~~~~s~~~~~~~~~~~~~~~~~~~~d~D~~lLL~~~~pLLqS~NsAVVlaaa~l~~~lap~ 238 (895)
-+.+...+...+ -|+. +.+- -.=.+|=...-+.++.-++.++
T Consensus 230 -vs~L~riv~~~~--------------------------------t~~q---dYTy--y~vP~PWL~vKl~rlLq~~p~~ 271 (938)
T KOG1077|consen 230 -VSRLSRIVVVVG--------------------------------TSLQ---DYTY--YFVPAPWLQVKLLRLLQIYPTP 271 (938)
T ss_pred -HHHHHHHHhhcc--------------------------------cchh---hcee--ecCCChHHHHHHHHHHHhCCCC
Confidence 000000000000 0000 0000 0001222223344444444332
Q ss_pred ---HHHHHHHHHHHHHhcC-----------CCcchHHHHHHHHHHHH-h--CCccccccc---ccceeccCCcHHHHHHH
Q 002667 239 ---EDVKRIVKPLLFILRS-----------SGASKYVVLCNIQVFAK-A--LPHLFVPHY---EDFFVSSSDSYQSKALK 298 (895)
Q Consensus 239 ---~~l~~~~~pLv~LL~s-----------~~eiqyvvL~~I~~i~~-~--~p~lF~~~l---~~Ffi~~sDp~~IK~lK 298 (895)
....++...|=++|+. +.|.+-.||--.+.++. . .|++...-. -.|. ...+ +.||-+.
T Consensus 272 ~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~~~~~~Lg~fl-s~rE-~NiRYLa 349 (938)
T KOG1077|consen 272 EDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLSRAVNQLGQFL-SHRE-TNIRYLA 349 (938)
T ss_pred CCchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHh-hccc-ccchhhh
Confidence 2344455555555542 12344445443333332 2 345655433 3332 2223 4599999
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHhh----c-cCChhHHHHHHHHHHHHHhhCcchHHHHHHHHHHHHHhhhccccccCCCC
Q 002667 299 LEILSSIVTESSISSVFKEFQDYI----R-DPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNG 373 (895)
Q Consensus 299 LeIL~~Lane~Nv~~IL~EL~~Yv----~-~~D~ef~~~aI~AIG~~A~~~p~~a~~cl~~Ll~LLs~~~~~~~~~~~~~ 373 (895)
||-++.|++.+-....++.=++-+ + +.|..++++++.-+--.+. -+.+..++..||+.|.. .
T Consensus 350 LEsm~~L~ss~~s~davK~h~d~Ii~sLkterDvSirrravDLLY~mcD--~~Nak~IV~elLqYL~t-----------A 416 (938)
T KOG1077|consen 350 LESMCKLASSEFSIDAVKKHQDTIINSLKTERDVSIRRRAVDLLYAMCD--VSNAKQIVAELLQYLET-----------A 416 (938)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhc--hhhHHHHHHHHHHHHhh-----------c
Confidence 999999999877777766544433 2 5677899999887754443 36788999999998863 1
Q ss_pred CCchhhhHHHH-HHHHHhhCCcc---hHHHHHHHHHhhhcc
Q 002667 374 EADVLIQSIIS-IKSIIKQDPSC---HEKVIIQLFRSLDSI 410 (895)
Q Consensus 374 ~~~vv~E~V~v-ik~Llq~~P~~---~~~ii~~L~~~ld~i 410 (895)
++.+.|-++. +.-|-.+|... +-.++.+|.+.-.+.
T Consensus 417 -d~sireeivlKvAILaEKyAtDy~WyVdviLqLiriagd~ 456 (938)
T KOG1077|consen 417 -DYSIREEIVLKVAILAEKYATDYSWYVDVILQLIRIAGDY 456 (938)
T ss_pred -chHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhccc
Confidence 2345554432 22223445332 445566666544443
No 70
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.75 E-value=2.7 Score=49.97 Aligned_cols=197 Identities=14% Similarity=0.154 Sum_probs=124.2
Q ss_pred cCCChHHHHHHHHHHHhcCCH-HH-----H-HHHHHHHHHHhcCC-CcchHHHHHHHHHHHHhCC---------cccccc
Q 002667 218 WSHNSAVVLAAAGVHWIMSPK-ED-----V-KRIVKPLLFILRSS-GASKYVVLCNIQVFAKALP---------HLFVPH 280 (895)
Q Consensus 218 qS~NsAVVlaaa~l~~~lap~-~~-----l-~~~~~pLv~LL~s~-~eiqyvvL~~I~~i~~~~p---------~lF~~~ 280 (895)
+..++.+.++||-+..+++.- .+ + ..++..|+.||.++ .+++--+.-.|.-|+-..| +.+.|-
T Consensus 120 ~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pL 199 (514)
T KOG0166|consen 120 RDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPL 199 (514)
T ss_pred cCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHH
Confidence 577799999999998888641 11 1 23566678999874 5565544444444443332 334444
Q ss_pred cccceeccCCcHHHHHHHHHHHHhhcCCC-------CHHHHHHHHHHhhccCChhHHHHHHHHHHHHHhhCcchHH----
Q 002667 281 YEDFFVSSSDSYQSKALKLEILSSIVTES-------SISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMAN---- 349 (895)
Q Consensus 281 l~~Ffi~~sDp~~IK~lKLeIL~~Lane~-------Nv~~IL~EL~~Yv~~~D~ef~~~aI~AIG~~A~~~p~~a~---- 349 (895)
+..+. .+++..+.+-..=.|.+||--. ++..||.=|..-+.+.|.++..+|.-||..++.--++...
T Consensus 200 l~~l~--~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~ 277 (514)
T KOG0166|consen 200 LRLLN--KSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVID 277 (514)
T ss_pred HHHhc--cccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 44333 2344557777777888998655 4788999999999999999999999999999977666554
Q ss_pred -HHHHHHHHHHHhhhccccccCCCCCCchhhhHHHHHHHHHhhCCcchHHH-----HHHHHHhhhccCchhhHHhhhhhh
Q 002667 350 -TCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQDPSCHEKV-----IIQLFRSLDSIKVPEARVMIIWMV 423 (895)
Q Consensus 350 -~cl~~Ll~LLs~~~~~~~~~~~~~~~~vv~E~V~vik~Llq~~P~~~~~i-----i~~L~~~ld~i~~p~ArAsIiWLL 423 (895)
.++..|++||... +..++.-++..+-+|+.-+..+...+ +..|..++..-.....|...+|+|
T Consensus 278 ~gvv~~LV~lL~~~-----------~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~i 346 (514)
T KOG0166|consen 278 AGVVPRLVDLLGHS-----------SPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTI 346 (514)
T ss_pred ccchHHHHHHHcCC-----------CcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHH
Confidence 4456788888631 12244445444445443333332222 334444444333344667679999
Q ss_pred cccc
Q 002667 424 GEYS 427 (895)
Q Consensus 424 GEY~ 427 (895)
+--+
T Consensus 347 SNIt 350 (514)
T KOG0166|consen 347 SNIT 350 (514)
T ss_pred HHhh
Confidence 8764
No 71
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=90.00 E-value=15 Score=44.54 Aligned_cols=80 Identities=16% Similarity=0.173 Sum_probs=53.9
Q ss_pred HHHhhcCCCCchhhHHHHHHHHHHhccCCcchhHHHHHHHHHHhcCCChhHHHHHHHHHHHhCCCCccchHHHHHHHHHh
Q 002667 16 AVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNNFTLIGRNYRNLCQI 95 (895)
Q Consensus 16 aIkk~l~D~SPYVRK~AA~AI~Kly~ld~pd~~~~L~eil~~LL~D~~p~VvgsAv~Af~EIcP~r~dLihk~yrkLc~~ 95 (895)
.|-.+++ .++-+.+-||.=|+|.|+.- |+..+.-++-+-.|..|.|..|-..|+..|-.+|-+.-+++.+..--|+.+
T Consensus 27 ~il~~~k-g~~k~K~Laaq~I~kffk~F-P~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kvaDvL~Ql 104 (556)
T PF05918_consen 27 EILDGVK-GSPKEKRLAAQFIPKFFKHF-PDLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKVADVLVQL 104 (556)
T ss_dssp HHHHGGG-S-HHHHHHHHHHHHHHHCC--GGGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHHHHHHHHH
T ss_pred HHHHHcc-CCHHHHHHHHHHHHHHHhhC-hhhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHHHHHHHHH
Confidence 3444444 35778888888888888887 886666666666677888888888888888888877777777777778887
Q ss_pred CC
Q 002667 96 LP 97 (895)
Q Consensus 96 L~ 97 (895)
|.
T Consensus 105 L~ 106 (556)
T PF05918_consen 105 LQ 106 (556)
T ss_dssp TT
T ss_pred Hh
Confidence 76
No 72
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=89.02 E-value=0.46 Score=38.83 Aligned_cols=33 Identities=33% Similarity=0.215 Sum_probs=28.8
Q ss_pred hhhhHHHHHHHHhhcCCCCchhhHHHHHHHHHH
Q 002667 7 HVISPLVLVAVGKCARDPSVFVRKCAANALPKL 39 (895)
Q Consensus 7 ~~I~piv~~aIkk~l~D~SPYVRK~AA~AI~Kl 39 (895)
...++-++..+.+++.|.++.||.+|+.|+.+|
T Consensus 23 ~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 23 QPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 346778889999999999999999999999764
No 73
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.90 E-value=81 Score=40.43 Aligned_cols=54 Identities=11% Similarity=0.025 Sum_probs=44.2
Q ss_pred chhhHHHHHHHHH-HhccCCcchhHHHHHHHHHHhcCCChhHHHHHHHHHHHhCC
Q 002667 26 VFVRKCAANALPK-LHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICP 79 (895)
Q Consensus 26 PYVRK~AA~AI~K-ly~ld~pd~~~~L~eil~~LL~D~~p~VvgsAv~Af~EIcP 79 (895)
|-+=|.+..++.+ +..-|.|++-+.+.+.+..+|.-.+..++-.|+..|.++|-
T Consensus 102 p~~iRvql~~~l~~Ii~~D~p~~Wp~l~d~i~~~Lqs~~~~~vy~aLl~l~qL~k 156 (1010)
T KOG1991|consen 102 PELIRVQLTACLNTIIKADYPEQWPGLLDKIKNLLQSQDANHVYGALLCLYQLFK 156 (1010)
T ss_pred chHHHHHHHHHHHHHHhcCCcccchhHHHHHHHHhcCcchhhHHHHHHHHHHHHH
Confidence 6666677777764 56666688889999999999998888888899999999983
No 74
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=88.79 E-value=21 Score=47.15 Aligned_cols=199 Identities=17% Similarity=0.167 Sum_probs=116.4
Q ss_pred hHHHHHHHHHHH----HhC---CcccccccccceeccCCcH-HHHHHHHHHHHhhcCCC-CH-----HHHHHHHHHhhcc
Q 002667 259 KYVVLCNIQVFA----KAL---PHLFVPHYEDFFVSSSDSY-QSKALKLEILSSIVTES-SI-----SSVFKEFQDYIRD 324 (895)
Q Consensus 259 qyvvL~~I~~i~----~~~---p~lF~~~l~~Ffi~~sDp~-~IK~lKLeIL~~Lane~-Nv-----~~IL~EL~~Yv~~ 324 (895)
+|-.|.++..+. ... -++|..+++.||-...++. ..-.-=++|+..|.++. |+ ..|+..|..+-++
T Consensus 117 ~~~lletl~~~k~~l~~~l~d~~e~~~~~f~~f~d~~~~~~~~~v~~~~~i~~~li~e~d~v~~e~L~~ll~~lv~~~~~ 196 (1266)
T KOG1525|consen 117 YFYLLETLAKVKFCLLMLLEDCQELVHELFRTFFDLARKGHPKKVFNMLDIAIMLITEEDTVQSELLDVLLENLVKPGRD 196 (1266)
T ss_pred HHHHHHHHHHhHHHheeeccchHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhccCCCC
Confidence 445556665543 111 2467778888886655542 22222677777776553 44 3566677777666
Q ss_pred CChhHHHHHHHHHHHHHhhCcchHHHHHHHHHHHHHhhhccccccCCCCCCchhhhHHHHHHHHHhhCCcchHHHHHHHH
Q 002667 325 PDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQDPSCHEKVIIQLF 404 (895)
Q Consensus 325 ~D~ef~~~aI~AIG~~A~~~p~~a~~cl~~Ll~LLs~~~~~~~~~~~~~~~~vv~E~V~vik~Llq~~P~~~~~ii~~L~ 404 (895)
...+=..-|-.-|-+||.++.......++..+..=.. .......-...+|..|-+-.|+....++.+|.
T Consensus 197 ~~~~a~~la~~li~~~a~~~~~~i~~f~~~~~~~~~s-----------~~~~~~~~~he~i~~L~~~~p~ll~~vip~l~ 265 (1266)
T KOG1525|consen 197 TIKEADKLASDLIERCADNLEDTIANFLNSCLTEYKS-----------RQSSLKIKYHELILELWRIAPQLLLAVIPQLE 265 (1266)
T ss_pred ccHHHHHHHHHHHHHhhhhhchhHHHHHHHHHhhccc-----------cccchhhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 6655555666778889998876655443333321110 00011112223555666667887778888877
Q ss_pred HhhhccCchhhHHhhhh----hhccccCCCCCccchHHHHHHHHHHhhccCcHHHHHHHHHHHHHHhhhcCC
Q 002667 405 RSLDSIKVPEARVMIIW----MVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKG 472 (895)
Q Consensus 405 ~~ld~i~~p~ArAsIiW----LLGEY~~~~e~ip~ia~dvLr~l~k~F~~E~~~VKlqILtaaaKL~~~~p~ 472 (895)
.-|-.-+ ...|-..+= +++++.+... .--++++..+.++|.+-+..||...+-.+.-.++.+|.
T Consensus 266 ~eL~se~-~~~Rl~a~~lvg~~~~~~~~~l~---~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~ 333 (1266)
T KOG1525|consen 266 FELLSEQ-EEVRLKAVKLVGRMFSDKDSQLS---ETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPS 333 (1266)
T ss_pred HHHhcch-HHHHHHHHHHHHHHHhcchhhhc---ccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCch
Confidence 6443222 223333333 4444443211 11267788888899999999999999998888888774
No 75
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=88.53 E-value=17 Score=40.62 Aligned_cols=92 Identities=26% Similarity=0.235 Sum_probs=68.5
Q ss_pred HHHHHHHHhhcCCCCchhhHHHHHHHHHHhccCCcchhHHHHHHHHHHhcCCChhHHHHHHHHHHHhCCCCccchHHHHH
Q 002667 11 PLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNNFTLIGRNYR 90 (895)
Q Consensus 11 piv~~aIkk~l~D~SPYVRK~AA~AI~Kly~ld~pd~~~~L~eil~~LL~D~~p~VvgsAv~Af~EIcP~r~dLihk~yr 90 (895)
+.....+.+.+.|.++.||..|+..+..+ + ....++.+..+|.|.++.|-..|+.++-++-... .+.
T Consensus 42 ~~~~~~~~~~l~~~~~~vr~~aa~~l~~~---~----~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~~~------a~~ 108 (335)
T COG1413 42 PEAADELLKLLEDEDLLVRLSAAVALGEL---G----SEEAVPLLRELLSDEDPRVRDAAADALGELGDPE------AVP 108 (335)
T ss_pred hhhHHHHHHHHcCCCHHHHHHHHHHHhhh---c----hHHHHHHHHHHhcCCCHHHHHHHHHHHHccCChh------HHH
Confidence 45677888999999999999999884422 1 2345556677899999999999999999886443 344
Q ss_pred HHHHhCC-CCChhhHHHHHHHHHhhh
Q 002667 91 NLCQILP-DVEEWGQILLIEILLRYV 115 (895)
Q Consensus 91 kLc~~L~-d~dEWgQv~iL~lL~rY~ 115 (895)
.|...|. +.+.|-.......|.+-.
T Consensus 109 ~li~~l~~d~~~~vR~~aa~aL~~~~ 134 (335)
T COG1413 109 PLVELLENDENEGVRAAAARALGKLG 134 (335)
T ss_pred HHHHHHHcCCcHhHHHHHHHHHHhcC
Confidence 5555555 688887777777777654
No 76
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=88.42 E-value=0.98 Score=54.49 Aligned_cols=70 Identities=20% Similarity=0.152 Sum_probs=59.1
Q ss_pred hhHHHHHHHHhhcCCCCchhhHHHHHHHHHHhccCC--cchhHHHHHHHHHHhcCCChhHHHHHHHHHHHhC
Q 002667 9 ISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQ--EEITSAIEEIVGILLNDRSPGVVGAAAAAFASIC 78 (895)
Q Consensus 9 I~piv~~aIkk~l~D~SPYVRK~AA~AI~Kly~ld~--pd~~~~L~eil~~LL~D~~p~VvgsAv~Af~EIc 78 (895)
-+.-+|.-+-+-+.|.+||+|-.|.+.+.|+|++.. |..+..+++.+...|.|++..|-.+|+..+..+.
T Consensus 343 ~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~~~~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL 414 (1128)
T COG5098 343 KLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKTVGRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLL 414 (1128)
T ss_pred HHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 345566677788999999999999999999999842 4466778888899999999999999998887765
No 77
>PF14797 SEEEED: Serine-rich region of AP3B1, clathrin-adaptor complex
Probab=88.03 E-value=0.61 Score=44.57 Aligned_cols=14 Identities=21% Similarity=0.159 Sum_probs=10.6
Q ss_pred CCCCCCCCCCCCCC
Q 002667 600 EEWTGSSSNGTDDP 613 (895)
Q Consensus 600 ~~~~~s~s~~~~~~ 613 (895)
.+.|||++|+++++
T Consensus 3 ~~kFYsEsEEeeds 16 (130)
T PF14797_consen 3 DKKFYSESEEEEDS 16 (130)
T ss_pred cccccccccccccc
Confidence 45699999987654
No 78
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=87.38 E-value=2.7 Score=38.81 Aligned_cols=77 Identities=22% Similarity=0.117 Sum_probs=59.2
Q ss_pred HHHhhcCCCCchhhHHHHHHHHHHhccCC--cchhHHHHHHHHHHhcCCChhHHHHHHHHHHHhC---CCCccchHHHHH
Q 002667 16 AVGKCARDPSVFVRKCAANALPKLHELRQ--EEITSAIEEIVGILLNDRSPGVVGAAAAAFASIC---PNNFTLIGRNYR 90 (895)
Q Consensus 16 aIkk~l~D~SPYVRK~AA~AI~Kly~ld~--pd~~~~L~eil~~LL~D~~p~VvgsAv~Af~EIc---P~r~dLihk~yr 90 (895)
-+.+-+.|+-|-||-.|..-+.|+..-.. ....+.+..++...|+|.++.|--||+.+|..+| |++ .+.
T Consensus 7 ~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~------vl~ 80 (92)
T PF10363_consen 7 EALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDE------VLP 80 (92)
T ss_pred HHHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHH------HHH
Confidence 34566789999999999999999987652 2367778888889999999999999999888775 443 445
Q ss_pred HHHHhCCC
Q 002667 91 NLCQILPD 98 (895)
Q Consensus 91 kLc~~L~d 98 (895)
.||..-.+
T Consensus 81 ~L~~~y~~ 88 (92)
T PF10363_consen 81 ILLDEYAD 88 (92)
T ss_pred HHHHHHhC
Confidence 56554443
No 79
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=87.09 E-value=28 Score=45.16 Aligned_cols=116 Identities=21% Similarity=0.276 Sum_probs=72.9
Q ss_pred HHHHHHHhcC-CCcchHHHHHHHHHHHHhCCcccccccccceec--cCCcHHHHHHHHHHHHhhcCCCCHHHHHHHHHHh
Q 002667 245 VKPLLFILRS-SGASKYVVLCNIQVFAKALPHLFVPHYEDFFVS--SSDSYQSKALKLEILSSIVTESSISSVFKEFQDY 321 (895)
Q Consensus 245 ~~pLv~LL~s-~~eiqyvvL~~I~~i~~~~p~lF~~~l~~Ffi~--~sDp~~IK~lKLeIL~~Lane~Nv~~IL~EL~~Y 321 (895)
....+.||.. ++.||-..|++|..||. ||-+ .+| .||..|.+|
T Consensus 580 ~~~v~sLlsd~~~~Vkr~Lle~i~~LC~------------FFGk~ksND----------------------~iLshLiTf 625 (1431)
T KOG1240|consen 580 EQMVSSLLSDSPPIVKRALLESIIPLCV------------FFGKEKSND----------------------VILSHLITF 625 (1431)
T ss_pred HHHHHHHHcCCchHHHHHHHHHHHHHHH------------Hhhhccccc----------------------chHHHHHHH
Confidence 3444677764 56899999999877764 6643 233 478889999
Q ss_pred hccCChhHHHHHHHHHHHHHhhCcch-HHHHHHHHHHHHHhhhccccccCCCCCCchhhhHHHHHHHHHhhCCcchHHHH
Q 002667 322 IRDPDRRFAADTVAAIGLCARKLPKM-ANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQDPSCHEKVI 400 (895)
Q Consensus 322 v~~~D~ef~~~aI~AIG~~A~~~p~~-a~~cl~~Ll~LLs~~~~~~~~~~~~~~~~vv~E~V~vik~Llq~~P~~~~~ii 400 (895)
+.+.|..++.+-+..|.-++.-+.+. .+ +.|+-||.+.. .++++.|+.-++-.+.-|++..- ..+..+
T Consensus 626 LNDkDw~LR~aFfdsI~gvsi~VG~rs~s---eyllPLl~Q~l-------tD~EE~Viv~aL~~ls~Lik~~l-l~K~~v 694 (1431)
T KOG1240|consen 626 LNDKDWRLRGAFFDSIVGVSIFVGWRSVS---EYLLPLLQQGL-------TDGEEAVIVSALGSLSILIKLGL-LRKPAV 694 (1431)
T ss_pred hcCccHHHHHHHHhhccceEEEEeeeeHH---HHHHHHHHHhc-------cCcchhhHHHHHHHHHHHHHhcc-cchHHH
Confidence 99999999999888887666555443 33 34555555421 14566666666656666654432 233344
Q ss_pred HHHHH
Q 002667 401 IQLFR 405 (895)
Q Consensus 401 ~~L~~ 405 (895)
..+.+
T Consensus 695 ~~i~~ 699 (1431)
T KOG1240|consen 695 KDILQ 699 (1431)
T ss_pred HHHHH
Confidence 44443
No 80
>PF02854 MIF4G: MIF4G domain; InterPro: IPR003890 This entry represents an MIF4G-like domain. MIF4G domains share a common structure but can differ in sequence. This entry is designated "type 3", and is found in nuclear cap-binding proteins, eIF4G, and UPF2. The MIF4G domain is a structural motif with an ARM (Armadillo) repeat-type fold, consisting of a 2-layer alpha/alpha right-handed superhelix. Proteins usually contain two or more structurally similar MIF4G domains connected by unstructured linkers. MIF4G domains are found in several proteins involved in RNA metabolism, including eIF4G (eukaryotic initiation factor 4-gamma), eIF-2b (translation initiation factor), UPF2 (regulator of nonsense transcripts 2), and nuclear cap-binding proteins (CBP80, CBC1, NCBP1), although the sequence identity between them may be low []. The nuclear cap-binding complex (CBC) is a heterodimer. Human CBC consists of a large CBP80 subunit and a small CBP20 subunit, the latter being critical for cap binding. CBP80 contains three MIF4G domains connected with long linkers, while CBP20 has an RNP (ribonucleoprotein)-type domain that associates with domains 2 and 3 of CBP80 []. The complex binds to 5'-cap of eukaryotic RNA polymerase II transcripts, such as mRNA and U snRNA. The binding is important for several mRNA nuclear maturation steps and for nonsense-mediated decay. It is also essential for nuclear export of U snRNAs in metazoans []. Eukaryotic translation initiation factor 4 gamma (eIF4G) plays a critical role in protein expression, and is at the centre of a complex regulatory network. Together with the cap-binding protein eIF4E, it recruits the small ribosomal subunit to the 5'-end of mRNA and promotes the assembly of a functional translation initiation complex, which scans along the mRNA to the translation start codon. The activity of eIF4G in translation initiation could be regulated through intra- and inter-protein interactions involving the ARM repeats []. In eIF4G, the MIF4G domain binds eIF4A, eIF3, RNA and DNA. Nonsense-mediated mRNA decay (NMD) in eukaryotes involves UPF1, UPF2 and UPF3 to accelerate the decay rate of two unique classes of transcripts: (1) nonsense mRNAs that arise through errors in gene expression, and (2) naturally occurring transcripts that lack coding errors but have built-in features that target them for accelerated decay (error-free mRNAs). NMD can trigger decay during any round of translation and can target CBC-bound or eIF-4E-bound transcripts []. UPF2 contains MIF4G domains, while UPF3 contains an RNP domain []. ; GO: 0005515 protein binding, 0016070 RNA metabolic process; PDB: 3FEY_A 3FEX_A 1H6K_C 1H2V_C 1H2U_A 1H2T_C 1N54_A 1N52_A 1HU3_A 3RK6_A ....
Probab=86.79 E-value=20 Score=36.35 Aligned_cols=152 Identities=16% Similarity=0.091 Sum_probs=85.0
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHHHhhCcchHHHHHHHHHHHHHhhhccccccCCCCCCc
Q 002667 297 LKLEILSSIVTESSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEAD 376 (895)
Q Consensus 297 lKLeIL~~Lane~Nv~~IL~EL~~Yv~~~D~ef~~~aI~AIG~~A~~~p~~a~~cl~~Ll~LLs~~~~~~~~~~~~~~~~ 376 (895)
+|+.-+.+=.++.|++.++++|..+..+.+.+.....++.|-..|..-|..+..+...+-. |.... . ..
T Consensus 2 r~v~~~lnklt~~n~~~~~~~l~~~~~~~~~~~~~~i~~~i~~~a~~~~~~~~~~a~l~~~-l~~~~---------~-~~ 70 (209)
T PF02854_consen 2 RKVRGILNKLTPSNFESIIDELIKLNWSDDPETLKEIVKLIFEKAVEEPNFSPLYARLCAA-LNSRF---------P-SE 70 (209)
T ss_dssp HHHHHHHHHCSSTTHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSGGGHHHHHHHHHH-HHHHC---------H-HH
T ss_pred chHHHHHHHCCHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhhhhcCchHHHHHHHHHHH-Hhccc---------h-hh
Confidence 3444444445599999999999998877788899999999999999999777665554433 33210 0 01
Q ss_pred hhhhHHHHHHHHHhhCCcchHHHHHHHHHhhhc--cCchhhHHhhhhhhccccCCCCCccchHHHHHHHHHHhhcc----
Q 002667 377 VLIQSIISIKSIIKQDPSCHEKVIIQLFRSLDS--IKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKS---- 450 (895)
Q Consensus 377 vv~E~V~vik~Llq~~P~~~~~ii~~L~~~ld~--i~~p~ArAsIiWLLGEY~~~~e~ip~ia~dvLr~l~k~F~~---- 450 (895)
+....+..+..-++... .....+. -..-.-+.+.+.++||-...+-.-+.++-++++.+......
T Consensus 71 f~~~ll~~~~~~f~~~~---------~~~~~~~~~~~~~~~~~~~~~fl~eL~~~~vv~~~~i~~~l~~ll~~~~~~~~~ 141 (209)
T PF02854_consen 71 FRSLLLNRCQEEFEERY---------SNEELEENRQSSKQRRRGNIRFLAELFNFGVVSEKIIFDILRELLSDGTDECQP 141 (209)
T ss_dssp HHHHHHHHHHHHHHHHT----------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHTSHHCCH
T ss_pred HHHHHHHHHHHHHHHhh---------hhhhHHHHHHHHHHHHhhhhhHHHhhHhhccccchhHHHHHHHHHhcccccccC
Confidence 11111111111111100 0000000 11122344567888884332112244567788888877665
Q ss_pred ----CcHHHHHHHHHHHHHHhh
Q 002667 451 ----EAVETKLQILNTTIKVLL 468 (895)
Q Consensus 451 ----E~~~VKlqILtaaaKL~~ 468 (895)
+.-+.=+.+|..+.+.+-
T Consensus 142 ~~~~~~ie~~~~lL~~~G~~l~ 163 (209)
T PF02854_consen 142 PPDEENIECLCTLLKTCGKKLE 163 (209)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHhHHHHHHHHHHHHHHHHh
Confidence 334455566777777665
No 81
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.05 E-value=97 Score=38.25 Aligned_cols=69 Identities=14% Similarity=0.050 Sum_probs=57.2
Q ss_pred hhHHHHHHHHHHhcCCChhHHHHHHHHHHHhCCCCccchHHHHHHHHHhCCCCChhhHHHHHHHHHhhhh
Q 002667 47 ITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNNFTLIGRNYRNLCQILPDVEEWGQILLIEILLRYVV 116 (895)
Q Consensus 47 ~~~~L~eil~~LL~D~~p~VvgsAv~Af~EIcP~r~dLihk~yrkLc~~L~d~dEWgQv~iL~lL~rY~r 116 (895)
..+-+..-+..+..|.|+.|-.+|+-++..+-. .+.|-.-.|.+.|+.|.|-+|=-....++++.-|+.
T Consensus 195 d~~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~e-g~kL~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn 263 (823)
T KOG2259|consen 195 DREHAARGLIYLEHDQDFRVRTHAVEGLLALSE-GFKLSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGN 263 (823)
T ss_pred cHHHHHHHHHHHhcCCCcchHHHHHHHHHhhcc-cccccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHh
Confidence 455566656678899999999999999988865 666666679999999999999888999999988873
No 82
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=85.52 E-value=37 Score=38.68 Aligned_cols=167 Identities=14% Similarity=0.173 Sum_probs=101.1
Q ss_pred HHHHHHHHHHhhc-CCCCHHHHHH-----HHHHhhccCChhHHHHHHHHHHHHHhhCcchHHHH-----HHHHHHHHHhh
Q 002667 294 SKALKLEILSSIV-TESSISSVFK-----EFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTC-----VEGLLALIRQE 362 (895)
Q Consensus 294 IK~lKLeIL~~La-ne~Nv~~IL~-----EL~~Yv~~~D~ef~~~aI~AIG~~A~~~p~~a~~c-----l~~Ll~LLs~~ 362 (895)
=|.-.|+-|-.++ +=+|...++. =+..|+.+.+..++..|.+-||.|+++-|.+-..+ +..|+..++.
T Consensus 99 ~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~- 177 (342)
T KOG2160|consen 99 DKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSS- 177 (342)
T ss_pred HHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHcc-
Confidence 4444455444444 2344444333 23449999999999999999999999999877655 4556666653
Q ss_pred hccccccCCCCCCchhhhHHHHHHHHHhhCCcchHHH-----HHHHHHhhhcc-CchhhHHhhhhhhccccCC--CCCcc
Q 002667 363 LLTSDIESGNGEADVLIQSIISIKSIIKQDPSCHEKV-----IIQLFRSLDSI-KVPEARVMIIWMVGEYSSV--GVKIP 434 (895)
Q Consensus 363 ~~~~~~~~~~~~~~vv~E~V~vik~Llq~~P~~~~~i-----i~~L~~~ld~i-~~p~ArAsIiWLLGEY~~~--~e~ip 434 (895)
+....+-..++-.|..+||++|...... ..-|.+.+.+- ++...++.++++++-+-.. .+..
T Consensus 178 ---------~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d- 247 (342)
T KOG2160|consen 178 ---------DDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDED- 247 (342)
T ss_pred ---------CCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhh-
Confidence 2223345677888999999998754332 23444455443 5678888889998876421 1100
Q ss_pred chHHHHHHHHHHhhc-cCcHHHHHHHHHHHHHHhhhcC
Q 002667 435 RMLTTVLKYLAWCFK-SEAVETKLQILNTTIKVLLCAK 471 (895)
Q Consensus 435 ~ia~dvLr~l~k~F~-~E~~~VKlqILtaaaKL~~~~p 471 (895)
.+.+..+.+.+.++. .....++...+++..++....+
T Consensus 248 ~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~~ 285 (342)
T KOG2160|consen 248 IASSLGFQRVLENLISSLDFEVNEAALTALLSLLSELS 285 (342)
T ss_pred HHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHHHHHh
Confidence 111222333333443 3456677777777766655443
No 83
>PF02883 Alpha_adaptinC2: Adaptin C-terminal domain; InterPro: IPR008152 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. AP (adaptor protein) complexes are found in coated vesicles and clathrin-coated pits. AP complexes connect cargo proteins and lipids to clathrin at vesicle budding sites, as well as binding accessory proteins that regulate coat assembly and disassembly (such as AP180, epsins and auxilin). There are different AP complexes in mammals. AP1 is responsible for the transport of lysosomal hydrolases between the TGN and endosomes []. AP2 associates with the plasma membrane and is responsible for endocytosis []. AP3 is responsible for protein trafficking to lysosomes and other related organelles []. AP4 is less well characterised. AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). For example, in AP1 these subunits are gamma-1-adaptin, beta-1-adaptin, mu-1 and sigma-1, while in AP2 they are alpha-adaptin, beta-2-adaptin, mu-2 and sigma-2. Each subunit has a specific function. Adaptins recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal ear (appendage) domains. Mu recognises tyrosine-based sorting signals within the cytoplasmic domains of transmembrane cargo proteins []. One function of clathrin and AP2 complex-mediated endocytosis is to regulate the number of GABA(A) receptors available at the cell surface []. GGAs (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) are a family of monomeric clathrin adaptor proteins that are conserved from yeasts to humans. GGAs regulate clathrin-mediated the transport of proteins (such as mannose 6-phosphate receptors) from the TGN to endosomes and lysosomes through interactions with TGN-sorting receptors, sometimes in conjunction with AP-1 [, ]. GGAs bind cargo, membranes, clathrin and accessory factors. GGA1, GGA2 and GGA3 all contain a domain homologous to the ear domain of gamma-adaptin. GGAs are composed of a single polypeptide with four domains: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The VHS domain is responsible for endocytosis and signal transduction, recognising transmembrane cargo through the ACLL sequence in the cytoplasmic domains of sorting receptors []. The GAT domain (also found in Tom1 proteins) interacts with ARF (ADP-ribosylation factor) to regulate membrane trafficking [], and with ubiquitin for receptor sorting []. The hinge region contains a clathrin box for recognition and binding to clathrin, similar to that found in AP adaptins. The GAE domain is similar to the AP gamma-adaptin ear domain, and is responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. This entry represents a beta-sandwich structural motif found in the appendage (ear) domain of alpha-, beta- and gamma-adaptin from AP clathrin adaptor complexes, and the GAE (gamma-adaptin ear) domain of GGA adaptor proteins. These domains have an immunoglobulin-like beta-sandwich fold containing 7 or 8 strands in 2 beta-sheets in a Greek key topology [, ]. Although these domains share a similar fold, there is little sequence identity between the alpha/beta-adaptins and gamma-adaptin/GAE. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030131 clathrin adaptor complex; PDB: 3MNM_B 3ZY7_B 1GYU_A 1GYW_B 2A7B_A 1GYV_A 2E9G_A 1E42_B 2G30_A 2IV9_B ....
Probab=85.52 E-value=2.4 Score=39.99 Aligned_cols=72 Identities=21% Similarity=0.368 Sum_probs=47.9
Q ss_pred CCCeeEEEEecCCCCCCCCCeEEEEEEEEeCCCCceeeeEeecccccchhhhhhhhhhhccccccCCCCCCCcccCCccc
Q 002667 739 GNGLKVYYSFSSEASTISPQLVCLETFFENCSSETMSEVTLVDEESHKALDLADLTLATTASSLTSQSDLPTLVPMEEIT 818 (895)
Q Consensus 739 g~GL~v~Y~f~r~p~~~~~~mv~v~l~f~N~s~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~i~ 818 (895)
-+||.|.|.+.+ .-.+....|.++|.|++..+|+++++--- .|.++...+. +- .-.
T Consensus 8 ~~~l~I~~~~~~---~~~~~~~~i~~~f~N~s~~~it~f~~q~a----vpk~~~l~l~----------------~~-s~~ 63 (115)
T PF02883_consen 8 DNGLQIGFKSEK---SPNPNQGRIKLTFGNKSSQPITNFSFQAA----VPKSFKLQLQ----------------PP-SSS 63 (115)
T ss_dssp ETTEEEEEEEEE---CCETTEEEEEEEEEE-SSS-BEEEEEEEE----EBTTSEEEEE----------------ES-S-S
T ss_pred CCCEEEEEEEEe---cCCCCEEEEEEEEEECCCCCcceEEEEEE----eccccEEEEe----------------CC-CCC
Confidence 468999999998 33478999999999999999999998642 2334332211 11 123
Q ss_pred ccCCCCeeEEEEEEec
Q 002667 819 SLEPGQTMKRILEVRF 834 (895)
Q Consensus 819 ~l~p~~~~~~~~~i~f 834 (895)
.|+||+.++-.|-|.=
T Consensus 64 ~i~p~~~i~Q~~~v~~ 79 (115)
T PF02883_consen 64 TIPPGQQITQVIKVEN 79 (115)
T ss_dssp SB-TTTEEEEEEEEEE
T ss_pred eeCCCCeEEEEEEEEE
Confidence 6888888887777654
No 84
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=84.97 E-value=15 Score=46.13 Aligned_cols=258 Identities=16% Similarity=0.107 Sum_probs=143.3
Q ss_pred chhhhHHHHHHHHhhcCCCCchhhHHHHHHHHHHhccC-CcchhHHHHHHHHHHhcCCChhHHHHHHH--HHHHhCCCCc
Q 002667 6 LHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELR-QEEITSAIEEIVGILLNDRSPGVVGAAAA--AFASICPNNF 82 (895)
Q Consensus 6 v~~I~piv~~aIkk~l~D~SPYVRK~AA~AI~Kly~ld-~pd~~~~L~eil~~LL~D~~p~VvgsAv~--Af~EIcP~r~ 82 (895)
...+..-++++++.++.|.++.||...|+-+.=+--+- .+...+.+.+..-.+|+|-+|.|..+-+- ...+.+++..
T Consensus 392 ~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~ 471 (759)
T KOG0211|consen 392 PNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILPKERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVI 471 (759)
T ss_pred cccchhhhhHHHHHHHhcccchHHHHHhccccccCccCCcCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcc
Confidence 33444555799999999999999999999887553332 12344556667777899999999998873 3334444432
Q ss_pred cchHHHHHHHHHhCCCCChhhHHHHHHHHHhhhhhcccccchhhhhhhhhcccCCCcccccccccccccCCCCCCccchh
Q 002667 83 TLIGRNYRNLCQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRTYDSE 162 (895)
Q Consensus 83 dLihk~yrkLc~~L~d~dEWgQv~iL~lL~rY~r~~~~~~~ps~~f~~~~~~~~~~~e~~~~~~~~l~~q~~~~~~~~~~ 162 (895)
. +--.-..++..+.++.||..-.+-.-+..|.+.-. .. . +.
T Consensus 472 g-~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la---~q--------~-----~~---------------------- 512 (759)
T KOG0211|consen 472 G-ISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLA---LQ--------L-----GV---------------------- 512 (759)
T ss_pred c-chhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHH---Hh--------h-----hh----------------------
Confidence 1 11123456777788888875555555666654210 00 0 00
Q ss_pred hhhhhhhhcccccccccccCCCcccccccccCccccCCCCChhHHHHHHhhhhhccCCChHHHHHHHH----HHHhcCCH
Q 002667 163 LVNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAG----VHWIMSPK 238 (895)
Q Consensus 163 ~~~~~~~~~~~~~d~~~~~s~~~~~~~~~~~~~~~~~~~~d~D~~lLL~~~~pLLqS~NsAVVlaaa~----l~~~lap~ 238 (895)
++ +|+-..-+ +...|...=.++-=+|++ +.+.++..
T Consensus 513 --------------~~-----------------------~~~~~~~l---~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~~ 552 (759)
T KOG0211|consen 513 --------------EF-----------------------FDEKLAEL---LRTWLPDHVYSIREAAARNLPALVETFGSE 552 (759)
T ss_pred --------------HH-----------------------hhHHHHHH---HHhhhhhhHHHHHHHHHHHhHHHHHHhCcc
Confidence 00 00000111 111122211222222222 22333322
Q ss_pred HHHHHHHHHH-HHHhcCCCcchHHHHHHHHHHHHhCC-cccccccccce-eccCCcH-HHHHHHHHHHHhhc---CCCCH
Q 002667 239 EDVKRIVKPL-LFILRSSGASKYVVLCNIQVFAKALP-HLFVPHYEDFF-VSSSDSY-QSKALKLEILSSIV---TESSI 311 (895)
Q Consensus 239 ~~l~~~~~pL-v~LL~s~~eiqyvvL~~I~~i~~~~p-~lF~~~l~~Ff-i~~sDp~-~IK~lKLeIL~~La---ne~Nv 311 (895)
-....++.-+ ...+..+-=.|...|..|..|+.... .++..++--++ -...||. .||...+..|..+. ...-.
T Consensus 553 w~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~~~~ 632 (759)
T KOG0211|consen 553 WARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDESVR 632 (759)
T ss_pred hhHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcchHHH
Confidence 2223333333 23333334578888999998886554 35556654333 3457774 78888887777664 33334
Q ss_pred HHHHHHHHHhh-ccCChhHHHHHHHHHHHHHh
Q 002667 312 SSVFKEFQDYI-RDPDRRFAADTVAAIGLCAR 342 (895)
Q Consensus 312 ~~IL~EL~~Yv-~~~D~ef~~~aI~AIG~~A~ 342 (895)
..-+..+...+ .+.|.+.+-.|+.|.|.++.
T Consensus 633 ~~~v~pll~~L~~d~~~dvr~~a~~a~~~i~l 664 (759)
T KOG0211|consen 633 DEEVLPLLETLSSDQELDVRYRAILAFGSIEL 664 (759)
T ss_pred HHHHHHHHHHhccCcccchhHHHHHHHHHHHH
Confidence 44444444433 57777888888888887765
No 85
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=84.89 E-value=1e+02 Score=37.52 Aligned_cols=391 Identities=16% Similarity=0.113 Sum_probs=204.7
Q ss_pred HHHHHHhhcCCCCchhhHHHHHHHHHHhccCCcchhHHHHHHHHHHhcCCChhHHHHHHHHHHHhCC---CCcc-chHHH
Q 002667 13 VLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICP---NNFT-LIGRN 88 (895)
Q Consensus 13 v~~aIkk~l~D~SPYVRK~AA~AI~Kly~ld~pd~~~~L~eil~~LL~D~~p~VvgsAv~Af~EIcP---~r~d-Lihk~ 88 (895)
+...+-.+ .|+++-||++-+-|....+.....++-..|.++-+.-|+-..-.-+.+++..++-... ...| .+|+.
T Consensus 19 ~~~~~~~g-~d~~~~v~~~ml~a~~~~~~~~~~~~v~~l~~~~~~~l~~~~~~~~~~~~~v~~~~~a~~~~~~d~~~~~~ 97 (569)
T KOG1242|consen 19 LLFLVSAG-EDRRIDVRGNMLEAGEAAINQHGDQNVLNLKPCFEQRLNSLHNDNLRNNVVVLEGTLAFHLQIVDPRPISI 97 (569)
T ss_pred ceeecccC-CCcchhhHHhHHHHHHHHHHhhhHHHHHHHHHHHHHHhccchhHHHhhhhHHHHHHHHHhccccCcchhHH
Confidence 33444455 9999999999998888887764244667788887777753333333444444433321 2223 47889
Q ss_pred HHHHHHhCCCCChhhHHHHHHHHHhhhhhcccccchhhhhhhhhcccCCCcccccccccccccCCCCCCccchhhhhhhh
Q 002667 89 YRNLCQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRTYDSELVNLVS 168 (895)
Q Consensus 89 yrkLc~~L~d~dEWgQv~iL~lL~rY~r~~~~~~~ps~~f~~~~~~~~~~~e~~~~~~~~l~~q~~~~~~~~~~~~~~~~ 168 (895)
..+|.+.+....+--|-.....|.-|.....+. +.
T Consensus 98 ~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~--~~------------------------------------------- 132 (569)
T KOG1242|consen 98 IEILLEELDTPSKSVQRAVSTCLPPLVVLSKGL--SG------------------------------------------- 132 (569)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhcc--CH-------------------------------------------
Confidence 999999999999999999999988776421000 00
Q ss_pred hhcccccccccccCCCcccccccccCccccCCCCChhHHHHHHhhhhhccCCChHHHHHHHHHHHhcCCH---HHH--HH
Q 002667 169 RSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSPK---EDV--KR 243 (895)
Q Consensus 169 ~~~~~~~d~~~~~s~~~~~~~~~~~~~~~~~~~~d~D~~lLL~~~~pLLqS~NsAVVlaaa~l~~~lap~---~~l--~~ 243 (895)
..++..+..+|.+...+=-..++.-.+.+-.. ..+ ..
T Consensus 133 --------------------------------------~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~~~~~~~ 174 (569)
T KOG1242|consen 133 --------------------------------------EYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGIESLKEFG 174 (569)
T ss_pred --------------------------------------HHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHHhhhhhhh
Confidence 00111111222222222222233222222110 000 11
Q ss_pred HHHHHHHHhcC--CCcchHHHHHHHHHHHHhCCcccccccccce----eccCCc-HHHHHHHHHHHHhhc---CCCCHHH
Q 002667 244 IVKPLLFILRS--SGASKYVVLCNIQVFAKALPHLFVPHYEDFF----VSSSDS-YQSKALKLEILSSIV---TESSISS 313 (895)
Q Consensus 244 ~~~pLv~LL~s--~~eiqyvvL~~I~~i~~~~p~lF~~~l~~Ff----i~~sDp-~~IK~lKLeIL~~La---ne~Nv~~ 313 (895)
+...|-..+.. +...+-.++-+.......-...|+||+..++ -+..|. ..+|....+-...+. +.--++.
T Consensus 175 ~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~ 254 (569)
T KOG1242|consen 175 FLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVKL 254 (569)
T ss_pred HHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhhH
Confidence 23333333332 1112224444444444444567888875544 234554 577777766665554 4555666
Q ss_pred HHHHHHHhhccCChhHHHHHHHHHHHHHhhCcchHHHHHHHHHHHHHhhhccccccCCCCCCch---hhhHHHHHHHHHh
Q 002667 314 VFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADV---LIQSIISIKSIIK 390 (895)
Q Consensus 314 IL~EL~~Yv~~~D~ef~~~aI~AIG~~A~~~p~~a~~cl~~Ll~LLs~~~~~~~~~~~~~~~~v---v~E~V~vik~Llq 390 (895)
++.-+..-+.+..=.-...+++.+|.++...|...+.|+.-++.-|+.- +. +....+ -.+++..++.++
T Consensus 255 llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsev-l~------DT~~evr~a~~~~l~~~~svi- 326 (569)
T KOG1242|consen 255 LLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEV-LW------DTKPEVRKAGIETLLKFGSVI- 326 (569)
T ss_pred hhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHH-Hc------cCCHHHHHHHHHHHHHHHHhh-
Confidence 6655444333222245667888888888888999999999888887641 11 111112 223444444444
Q ss_pred hCCcchHHHHHHHHHhhhccCchhhHH-hhhhhh--ccccCCCC--CccchHHHHHHHHHHhhccCcHHHH---HHHHHH
Q 002667 391 QDPSCHEKVIIQLFRSLDSIKVPEARV-MIIWMV--GEYSSVGV--KIPRMLTTVLKYLAWCFKSEAVETK---LQILNT 462 (895)
Q Consensus 391 ~~P~~~~~ii~~L~~~ld~i~~p~ArA-sIiWLL--GEY~~~~e--~ip~ia~dvLr~l~k~F~~E~~~VK---lqILta 462 (895)
.||+ ...++..|.++ +.+|..+. ..+-.+ ++|.+.++ .+.-+.|.+-|-+.++ +..+| .+|.--
T Consensus 327 dN~d-I~~~ip~Lld~---l~dp~~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eR----st~~kr~t~~IidN 398 (569)
T KOG1242|consen 327 DNPD-IQKIIPTLLDA---LADPSCYTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAER----STSIKRKTAIIIDN 398 (569)
T ss_pred ccHH-HHHHHHHHHHH---hcCcccchHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhc----cchhhhhHHHHHHH
Confidence 3454 34455555544 44554221 112222 34444332 1222345555544432 32322 456667
Q ss_pred HHHHhhhcCCCChHHHHHHHHHHHHHHccCCChHHHhHHHHHH
Q 002667 463 TIKVLLCAKGGDMWTITRLFSYLLELAECDLNYDVRDRARFFK 505 (895)
Q Consensus 463 aaKL~~~~p~e~~~~l~~L~qyvL~la~~D~n~DVRDRAr~y~ 505 (895)
++|++ ..|.+..+.+..|+-. |+...+|..|++|-=|..-+
T Consensus 399 m~~Lv-eDp~~lapfl~~Llp~-lk~~~~d~~PEvR~vaarAL 439 (569)
T KOG1242|consen 399 MCKLV-EDPKDLAPFLPSLLPG-LKENLDDAVPEVRAVAARAL 439 (569)
T ss_pred HHHhh-cCHHHHhhhHHHHhhH-HHHHhcCCChhHHHHHHHHH
Confidence 77775 2343333344555543 35566788899987654433
No 86
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=84.36 E-value=21 Score=39.92 Aligned_cols=81 Identities=26% Similarity=0.284 Sum_probs=58.4
Q ss_pred HHHHHHHHhhcCCCCchhhHHHHHHHHHHhccCCcchhHHHHHHHHHHhcCCChhHHHHHHHHHHHhCCCCccchHHHHH
Q 002667 11 PLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNNFTLIGRNYR 90 (895)
Q Consensus 11 piv~~aIkk~l~D~SPYVRK~AA~AI~Kly~ld~pd~~~~L~eil~~LL~D~~p~VvgsAv~Af~EIcP~r~dLihk~yr 90 (895)
+-.+..+.+.+.|.++.||..|+.|+.++- + |+-.+.|++.+. +|.+..|-.+|+.++..+-..+ ...
T Consensus 73 ~~av~~l~~~l~d~~~~vr~~a~~aLg~~~--~-~~a~~~li~~l~---~d~~~~vR~~aa~aL~~~~~~~------a~~ 140 (335)
T COG1413 73 EEAVPLLRELLSDEDPRVRDAAADALGELG--D-PEAVPPLVELLE---NDENEGVRAAAARALGKLGDER------ALD 140 (335)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHccC--C-hhHHHHHHHHHH---cCCcHhHHHHHHHHHHhcCchh------hhH
Confidence 456778899999999999999999888662 2 333444444433 3999999999999999997665 244
Q ss_pred HHHHhCCCCChhh
Q 002667 91 NLCQILPDVEEWG 103 (895)
Q Consensus 91 kLc~~L~d~dEWg 103 (895)
.|.+.+.+-..+.
T Consensus 141 ~l~~~l~~~~~~~ 153 (335)
T COG1413 141 PLLEALQDEDSGS 153 (335)
T ss_pred HHHHHhccchhhh
Confidence 5666666554444
No 87
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=84.33 E-value=7.6 Score=40.82 Aligned_cols=103 Identities=11% Similarity=0.142 Sum_probs=67.5
Q ss_pred HHHHHHHHHhcC-CCcchHHHHHHHHHHHHhCCccccccccccee----ccCCc-HHHHHHHHHHHHhhcCCCC-HHHH-
Q 002667 243 RIVKPLLFILRS-SGASKYVVLCNIQVFAKALPHLFVPHYEDFFV----SSSDS-YQSKALKLEILSSIVTESS-ISSV- 314 (895)
Q Consensus 243 ~~~~pLv~LL~s-~~eiqyvvL~~I~~i~~~~p~lF~~~l~~Ffi----~~sDp-~~IK~lKLeIL~~Lane~N-v~~I- 314 (895)
.+...++..+.+ ..-+.-.++..+..|+...+.-|.+|+..++. +..|+ ..|+...-+.|..++...+ ...+
T Consensus 53 ~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~ 132 (228)
T PF12348_consen 53 QLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKIL 132 (228)
T ss_dssp ---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HHH
T ss_pred HhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHHH
Confidence 333455555543 45567777888888888777778888665542 34665 6899999999999999888 4566
Q ss_pred HHHHHHhhccCChhHHHHHHHHHHHHHhhCc
Q 002667 315 FKEFQDYIRDPDRRFAADTVAAIGLCARKLP 345 (895)
Q Consensus 315 L~EL~~Yv~~~D~ef~~~aI~AIG~~A~~~p 345 (895)
+.-+.....+-+...+..+...+..+..+.+
T Consensus 133 ~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~ 163 (228)
T PF12348_consen 133 LEILSQGLKSKNPQVREECAEWLAIILEKWG 163 (228)
T ss_dssp HHHHHHHTT-S-HHHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHcc
Confidence 6677777788888899999999999888887
No 88
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.91 E-value=23 Score=43.82 Aligned_cols=177 Identities=16% Similarity=0.266 Sum_probs=113.1
Q ss_pred HHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHHhCCcccccccccceeccCCc-HHHHHHHHHHHHhhcCCCCHHHHHH
Q 002667 239 EDVKRIVKPLLFILRS-SGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDS-YQSKALKLEILSSIVTESSISSVFK 316 (895)
Q Consensus 239 ~~l~~~~~pLv~LL~s-~~eiqyvvL~~I~~i~~~~p~lF~~~l~~Ffi~~sDp-~~IK~lKLeIL~~Lane~Nv~~IL~ 316 (895)
.++..+.+.++..+.. +-+.+=++.-.+...+...|..-.-....|.--..|+ .-||.+++..+..|.-+.=++.+.+
T Consensus 45 ~DvSslF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~a~~avnt~~kD~~d~np~iR~lAlrtm~~l~v~~i~ey~~~ 124 (734)
T KOG1061|consen 45 KDVSSLFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDLAILAVNTFLKDCEDPNPLIRALALRTMGCLRVDKITEYLCD 124 (734)
T ss_pred cchHhhhHHHHhhcccCCchHHHHHHHHHHHhhccCchHHHhhhhhhhccCCCCCHHHHHHHhhceeeEeehHHHHHHHH
Confidence 4556666666666653 3455554444455555666754444444444444555 5799999999999988888889999
Q ss_pred HHHHhhccCChhHHHHHHHHHHHHHhhCcch--HHHHHHHHHHHHHhhhccccccCCCCCCchhhhHHHHHHHHHhhCCc
Q 002667 317 EFQDYIRDPDRRFAADTVAAIGLCARKLPKM--ANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQDPS 394 (895)
Q Consensus 317 EL~~Yv~~~D~ef~~~aI~AIG~~A~~~p~~--a~~cl~~Ll~LLs~~~~~~~~~~~~~~~~vv~E~V~vik~Llq~~P~ 394 (895)
.|...+++.+...++.+.-.+.++-..-+.. ....++.|-+++. +.+..||+-++-.+..|...+|+
T Consensus 125 Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~~gl~~~L~~ll~-----------D~~p~VVAnAlaaL~eI~e~~~~ 193 (734)
T KOG1061|consen 125 PLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVEDSGLVDALKDLLS-----------DSNPMVVANALAALSEIHESHPS 193 (734)
T ss_pred HHHHhccCCChhHHHHHHHHHHHhhcCChhhccccchhHHHHHHhc-----------CCCchHHHHHHHHHHHHHHhCCC
Confidence 9999999888766666655554444333332 1244566666665 23456888899999999988874
Q ss_pred -----chHHHHHHHHHhhhccCchhhHHhhhhhhcccc
Q 002667 395 -----CHEKVIIQLFRSLDSIKVPEARVMIIWMVGEYS 427 (895)
Q Consensus 395 -----~~~~ii~~L~~~ld~i~~p~ArAsIiWLLGEY~ 427 (895)
....++.++...+..+++ -+++.|+=.+-+|-
T Consensus 194 ~~~~~l~~~~~~~lL~al~ec~E-W~qi~IL~~l~~y~ 230 (734)
T KOG1061|consen 194 VNLLELNPQLINKLLEALNECTE-WGQIFILDCLAEYV 230 (734)
T ss_pred CCcccccHHHHHHHHHHHHHhhh-hhHHHHHHHHHhcC
Confidence 234556666666655543 35566666666774
No 89
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=82.28 E-value=1.3 Score=35.02 Aligned_cols=25 Identities=28% Similarity=0.179 Sum_probs=22.5
Q ss_pred HHHHHHHHhhcCCCCchhhHHHHHH
Q 002667 11 PLVLVAVGKCARDPSVFVRKCAANA 35 (895)
Q Consensus 11 piv~~aIkk~l~D~SPYVRK~AA~A 35 (895)
+.|..+|.+.+.|.+|-||++|.-.
T Consensus 17 ~~v~~~i~~rl~D~s~~VR~aav~l 41 (42)
T PF12765_consen 17 SDVQSAIIRRLSDSSPSVREAAVDL 41 (42)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHH
Confidence 5789999999999999999999754
No 90
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=81.72 E-value=2.3 Score=37.60 Aligned_cols=61 Identities=16% Similarity=0.229 Sum_probs=34.4
Q ss_pred eEEEEEEEEeCCCCceeeeEeecccccchhhhhhhhhhhccccccCCCCCCCcccCCcccccCCCCeeEEEEEEecCCCC
Q 002667 759 LVCLETFFENCSSETMSEVTLVDEESHKALDLADLTLATTASSLTSQSDLPTLVPMEEITSLEPGQTMKRILEVRFHHHL 838 (895)
Q Consensus 759 mv~v~l~f~N~s~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~i~~l~p~~~~~~~~~i~f~~~~ 838 (895)
=+.+.++++|.++.++.++.+.-. +|+|-... ..-..+..|+||++.+..+-|.=-...
T Consensus 6 ~~~~~~tv~N~g~~~~~~v~~~l~----~P~GW~~~-----------------~~~~~~~~l~pG~s~~~~~~V~vp~~a 64 (78)
T PF10633_consen 6 TVTVTLTVTNTGTAPLTNVSLSLS----LPEGWTVS-----------------ASPASVPSLPPGESVTVTFTVTVPADA 64 (78)
T ss_dssp EEEEEEEEE--SSS-BSS-EEEEE------TTSE--------------------EEEEE--B-TTSEEEEEEEEEE-TT-
T ss_pred EEEEEEEEEECCCCceeeEEEEEe----CCCCcccc-----------------CCccccccCCCCCEEEEEEEEECCCCC
Confidence 367899999999999999999643 68885311 001255699999999988877655544
Q ss_pred cc
Q 002667 839 LP 840 (895)
Q Consensus 839 ~~ 840 (895)
.+
T Consensus 65 ~~ 66 (78)
T PF10633_consen 65 AP 66 (78)
T ss_dssp -S
T ss_pred CC
Confidence 43
No 91
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=79.96 E-value=9.6 Score=49.13 Aligned_cols=110 Identities=17% Similarity=0.102 Sum_probs=77.7
Q ss_pred hhhhHHHHHHHHhhcCCCCchhhHHHHHHHHHHhcc-CCcchhHHHHHHHHHHhcCCChhHHHHHHHHHHHhCC-CCcc-
Q 002667 7 HVISPLVLVAVGKCARDPSVFVRKCAANALPKLHEL-RQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICP-NNFT- 83 (895)
Q Consensus 7 ~~I~piv~~aIkk~l~D~SPYVRK~AA~AI~Kly~l-d~pd~~~~L~eil~~LL~D~~p~VvgsAv~Af~EIcP-~r~d- 83 (895)
..++..|-..+...+.|+.|+||++-..+|.-|+.. .+....+.|...|-+.|+|+|...-++=+-.+.-||- -.|.
T Consensus 573 ~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs 652 (1431)
T KOG1240|consen 573 QALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRS 652 (1431)
T ss_pred HHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeee
Confidence 456777888889999999999999999999998886 3122345577888899999999887753222222220 0011
Q ss_pred chHHHHHHHHHhCCCCChhhHHHHHHHHHhhhh
Q 002667 84 LIGRNYRNLCQILPDVEEWGQILLIEILLRYVV 116 (895)
Q Consensus 84 Lihk~yrkLc~~L~d~dEWgQv~iL~lL~rY~r 116 (895)
+-.....-|...|.|-+|.--+.+|..|+-.+.
T Consensus 653 ~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik 685 (1431)
T KOG1240|consen 653 VSEYLLPLLQQGLTDGEEAVIVSALGSLSILIK 685 (1431)
T ss_pred HHHHHHHHHHHhccCcchhhHHHHHHHHHHHHH
Confidence 111123457778999999999999988887764
No 92
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=79.92 E-value=1.1e+02 Score=38.25 Aligned_cols=69 Identities=14% Similarity=0.128 Sum_probs=55.9
Q ss_pred hhHHHHHHHHhhcCCCCchhhHHHHHHHHHHhccCCcchhHHHHHHHHHHhcCCChhHHHHHHHHHHHhC
Q 002667 9 ISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASIC 78 (895)
Q Consensus 9 I~piv~~aIkk~l~D~SPYVRK~AA~AI~Kly~ld~pd~~~~L~eil~~LL~D~~p~VvgsAv~Af~EIc 78 (895)
...=.+..|.....|+=+.||+.|.-.|.-|-.-- |++...|.-.+-.-|.|.+.-+.+.|.+.+..+.
T Consensus 301 ly~rfievLe~lS~D~L~~vk~raL~ti~~lL~~k-PEqE~~LL~~lVNKlGDpqnKiaskAsylL~~L~ 369 (988)
T KOG2038|consen 301 LYFRFIEVLEELSKDPLEEVKKRALKTIYDLLTNK-PEQENNLLVLLVNKLGDPQNKIASKASYLLEGLL 369 (988)
T ss_pred HHHHHHHHHHHHccccHHHHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHhcCCcchhhhhhHHHHHHHHH
Confidence 34456777888999999999999999988776656 8877766666656689999999999999988874
No 93
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=79.63 E-value=1.2e+02 Score=37.08 Aligned_cols=70 Identities=20% Similarity=0.124 Sum_probs=48.3
Q ss_pred hhHHHHHHHHhhcCCCCchhhHHHHHHHHHHhccCCcchhHHHHHHHHHHh-cCCChhHHHHHHHHHHHhCCC
Q 002667 9 ISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILL-NDRSPGVVGAAAAAFASICPN 80 (895)
Q Consensus 9 I~piv~~aIkk~l~D~SPYVRK~AA~AI~Kly~ld~pd~~~~L~eil~~LL-~D~~p~VvgsAv~Af~EIcP~ 80 (895)
+.-.+..-+.+-+-|..|-||+-|+.|+.|+-.+. -+....+..++..++ +|.+.-|-.+|+. -.++-+.
T Consensus 129 l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~-~neen~~~n~l~~~vqnDPS~EVRr~all-ni~vdns 199 (885)
T COG5218 129 LANGLLEKLSERLFDREKAVRREAVKVLCYYQEME-LNEENRIVNLLKDIVQNDPSDEVRRLALL-NISVDNS 199 (885)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcc-CChHHHHHHHHHHHHhcCcHHHHHHHHHH-HeeeCCC
Confidence 34455666777888999999999999999987764 333444555555555 7888888776644 3344444
No 94
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=79.37 E-value=29 Score=35.31 Aligned_cols=125 Identities=15% Similarity=0.305 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHHhC-Ccccccccccce------eccCCcHHHHHHHHHHHHhhcCCC
Q 002667 238 KEDVKRIVKPLLFILRS-SGASKYVVLCNIQVFAKAL-PHLFVPHYEDFF------VSSSDSYQSKALKLEILSSIVTES 309 (895)
Q Consensus 238 ~~~l~~~~~pLv~LL~s-~~eiqyvvL~~I~~i~~~~-p~lF~~~l~~Ff------i~~sDp~~IK~lKLeIL~~Lane~ 309 (895)
...+.+.+.-+..||++ ++.-++.+++-+..++... ++.|..|+..++ +...||..++...+..|..|.
T Consensus 20 ~~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~--- 96 (165)
T PF08167_consen 20 KSALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLF--- 96 (165)
T ss_pred HHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH---
Confidence 45677777778888876 5788999999998888887 788876665443 123666667777777766653
Q ss_pred CHHHHHHHHHHhhccCChhHHHHHHHHHHHHHhhCcchHHHHHHHHHHHHHhhhccccccCCCCCCchhhhHHHHHHHHH
Q 002667 310 SISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSII 389 (895)
Q Consensus 310 Nv~~IL~EL~~Yv~~~D~ef~~~aI~AIG~~A~~~p~~a~~cl~~Ll~LLs~~~~~~~~~~~~~~~~vv~E~V~vik~Ll 389 (895)
.|+... .++.++.. . +.....+..++.+++. ......++..+..++
T Consensus 97 ----------~~~~~~-p~l~Rei~------t----p~l~~~i~~ll~l~~~-------------~~~~~~~l~~L~~ll 142 (165)
T PF08167_consen 97 ----------DLIRGK-PTLTREIA------T----PNLPKFIQSLLQLLQD-------------SSCPETALDALATLL 142 (165)
T ss_pred ----------HHhcCC-CchHHHHh------h----ccHHHHHHHHHHHHhc-------------cccHHHHHHHHHHHH
Confidence 233321 22333221 1 1122445666666651 234556777899999
Q ss_pred hhCCcchHHH
Q 002667 390 KQDPSCHEKV 399 (895)
Q Consensus 390 q~~P~~~~~i 399 (895)
+.||..+...
T Consensus 143 ~~~ptt~rp~ 152 (165)
T PF08167_consen 143 PHHPTTFRPF 152 (165)
T ss_pred HHCCccccch
Confidence 9999865433
No 95
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=79.14 E-value=10 Score=35.35 Aligned_cols=73 Identities=19% Similarity=0.334 Sum_probs=57.7
Q ss_pred hHHHHHHHHHHhhccCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHccCCChHHHhHHHHHHHHcc
Q 002667 436 MLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTITRLFSYLLELAECDLNYDVRDRARFFKKLFS 509 (895)
Q Consensus 436 ia~dvLr~l~k~F~~E~~~VKlqILtaaaKL~~~~p~e~~~~l~~L~qyvL~la~~D~n~DVRDRAr~y~~LL~ 509 (895)
..+.++.-+.+.|.+++..||.....++..+.-...++....+..+|..+..+. .|.+.+||.=|.++-+||.
T Consensus 24 ~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~-~D~d~~Vr~~a~~Ld~llk 96 (97)
T PF12755_consen 24 YLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLS-ADPDENVRSAAELLDRLLK 96 (97)
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCchhHHHHHHHHHHHhc
Confidence 456677777789999999999998888888766555554445677888877764 6899999999999999874
No 96
>COG1470 Predicted membrane protein [Function unknown]
Probab=76.70 E-value=6.5 Score=46.01 Aligned_cols=64 Identities=16% Similarity=0.185 Sum_probs=50.2
Q ss_pred EEEEEEEeCCCCceeeeEeecccccchhhhhhhhhhhccccccCCCCCCCcccCCcccccCCCCeeEEEEEEecCCCCcc
Q 002667 761 CLETFFENCSSETMSEVTLVDEESHKALDLADLTLATTASSLTSQSDLPTLVPMEEITSLEPGQTMKRILEVRFHHHLLP 840 (895)
Q Consensus 761 ~v~l~f~N~s~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~i~~l~p~~~~~~~~~i~f~~~~~~ 840 (895)
.+.+.++|.++.+++||.|.=+ .|.|.+ -.+.++ .|++|+||++-++.+-|.-...+-+
T Consensus 400 ~i~i~I~NsGna~LtdIkl~v~----~PqgWe----------------i~Vd~~-~I~sL~pge~~tV~ltI~vP~~a~a 458 (513)
T COG1470 400 TIRISIENSGNAPLTDIKLTVN----GPQGWE----------------IEVDES-TIPSLEPGESKTVSLTITVPEDAGA 458 (513)
T ss_pred eEEEEEEecCCCccceeeEEec----CCccce----------------EEECcc-cccccCCCCcceEEEEEEcCCCCCC
Confidence 4788899999999999999764 577743 024455 8999999999999999998887776
Q ss_pred ceEEE
Q 002667 841 LKLAL 845 (895)
Q Consensus 841 ~~~~l 845 (895)
=.-.+
T Consensus 459 GdY~i 463 (513)
T COG1470 459 GDYRI 463 (513)
T ss_pred CcEEE
Confidence 54433
No 97
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=76.67 E-value=2e+02 Score=35.50 Aligned_cols=74 Identities=23% Similarity=0.212 Sum_probs=54.8
Q ss_pred ccchhhhHHHHHHHHhhcCCCCchhhHHHHHHHHHHhcc---CCcc--hhHHHHHHHHHHhcCCChhHHHHHHHHHHHhC
Q 002667 4 IRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHEL---RQEE--ITSAIEEIVGILLNDRSPGVVGAAAAAFASIC 78 (895)
Q Consensus 4 IRv~~I~piv~~aIkk~l~D~SPYVRK~AA~AI~Kly~l---d~pd--~~~~L~eil~~LL~D~~p~VvgsAv~Af~EIc 78 (895)
+|-.--.+.++-.|-+.++++.|.||-.||--+..+-.. . -+ ....+-.+|..-|....|-|+|+.+.|+..|.
T Consensus 596 ~r~kp~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c-~e~~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~ 674 (975)
T COG5181 596 FRGKPHLSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKAC-GETKELAKLGNILYENLGEDYPEVLGSILKAICSIY 674 (975)
T ss_pred hccCcchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhc-chHHHHHHHhHHHHHhcCcccHHHHHHHHHHHHHHh
Confidence 344445677788899999999999999999766555443 3 22 33345566777788889999999988887775
No 98
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=76.28 E-value=1e+02 Score=33.11 Aligned_cols=123 Identities=15% Similarity=0.111 Sum_probs=78.8
Q ss_pred hccCCChHHHHHHHHHHHhcCCHH--HHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHHhCCcccccccccceec-----
Q 002667 216 LLWSHNSAVVLAAAGVHWIMSPKE--DVKRIVKPLLFILRS-SGASKYVVLCNIQVFAKALPHLFVPHYEDFFVS----- 287 (895)
Q Consensus 216 LLqS~NsAVVlaaa~l~~~lap~~--~l~~~~~pLv~LL~s-~~eiqyvvL~~I~~i~~~~p~lF~~~l~~Ffi~----- 287 (895)
+-+..++.++....++...++... ....+.+.|..|... ..+.+|+.++-+..+-..++..| ++++.|...
T Consensus 9 l~~~~~~~~~~~~L~~L~~l~~~~~~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f-~~L~~~L~~~~~r~ 87 (234)
T PF12530_consen 9 LGKISDPELQLPLLEALPSLACHKNVCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF-PFLQPLLLLLILRI 87 (234)
T ss_pred hcCCCChHHHHHHHHHHHHHhccCccchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH-HHHHHHHHHHHhhc
Confidence 556778888888888887776433 344566677777765 46678999999999999998887 666644333
Q ss_pred ----cCCcH------HHHHHHHHHHHhhcCCCCHHHHHHHHHHhh-ccCChhHHHHHHHHHHHHH
Q 002667 288 ----SSDSY------QSKALKLEILSSIVTESSISSVFKEFQDYI-RDPDRRFAADTVAAIGLCA 341 (895)
Q Consensus 288 ----~sDp~------~IK~lKLeIL~~Lane~Nv~~IL~EL~~Yv-~~~D~ef~~~aI~AIG~~A 341 (895)
.++.. .++.---+|.. ..++.-..++..+...+ .+.+...+..++++|..+.
T Consensus 88 ~~~~~~~~~~~~~~i~~a~s~~~ic~--~~p~~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc 150 (234)
T PF12530_consen 88 PSSFSSKDEFWECLISIAASIRDICC--SRPDHGVDLLPLLSGCLNQSCDEVAQALALEALAPLC 150 (234)
T ss_pred ccccCCCcchHHHHHHHHHHHHHHHH--hChhhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 11111 01111111222 13447778888888888 5666667777777777665
No 99
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=75.84 E-value=1.4e+02 Score=33.25 Aligned_cols=128 Identities=18% Similarity=0.147 Sum_probs=74.2
Q ss_pred HHHH-hhhhhccCCChHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHhc-CCCcchHHHHHHHHHHHHhCC-cccccccc
Q 002667 208 LLLQ-CTSPLLWSHNSAVVLAAAGVHWI--MSPKEDVKRIVKPLLFILR-SSGASKYVVLCNIQVFAKALP-HLFVPHYE 282 (895)
Q Consensus 208 lLL~-~~~pLLqS~NsAVVlaaa~l~~~--lap~~~l~~~~~pLv~LL~-s~~eiqyvvL~~I~~i~~~~p-~lF~~~l~ 282 (895)
-+++ -+.|.++|.+++|-..+.+++-. +-.+..-.....-+...+. .+.+++-++|+.|--|+..++ ..|...-
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~- 104 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSES- 104 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchh-
Confidence 4444 44488888888776666665422 1122222222222333343 356788888888877777665 2222221
Q ss_pred cceeccCCcHHHHHHHHHHHHhhcCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHHHhh--CcchHHHHHHHHHHH
Q 002667 283 DFFVSSSDSYQSKALKLEILSSIVTESSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARK--LPKMANTCVEGLLAL 358 (895)
Q Consensus 283 ~Ffi~~sDp~~IK~lKLeIL~~Lane~Nv~~IL~EL~~Yv~~~D~ef~~~aI~AIG~~A~~--~p~~a~~cl~~Ll~L 358 (895)
++. .......+++=|..|+.+.+.++...++.++.++-.. +.. ...++..|+-+
T Consensus 105 -------~~~--------------~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~-~~~vL~~Lll~ 160 (298)
T PF12719_consen 105 -------DND--------------ESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD-PPKVLSRLLLL 160 (298)
T ss_pred -------ccC--------------ccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc-HHHHHHHHHHH
Confidence 111 3444566777788888888888999999999886543 333 24555555543
No 100
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.80 E-value=89 Score=36.02 Aligned_cols=245 Identities=14% Similarity=0.132 Sum_probs=146.8
Q ss_pred HHhhcCCCCchhhHHHHHHHHHHhccCCcc-----hhHHHHHHHHHHhcCCChhHHHHHHHHHH---HhCCCCccchHH-
Q 002667 17 VGKCARDPSVFVRKCAANALPKLHELRQEE-----ITSAIEEIVGILLNDRSPGVVGAAAAAFA---SICPNNFTLIGR- 87 (895)
Q Consensus 17 Ikk~l~D~SPYVRK~AA~AI~Kly~ld~pd-----~~~~L~eil~~LL~D~~p~VvgsAv~Af~---EIcP~r~dLihk- 87 (895)
|.+.++| .--||..|+-||-.+-.+| .. ....|..+. +|-+-++-.|-.+|.-|+. .+..+|-.|+|.
T Consensus 132 i~qmmtd-~vevqcnaVgCitnLaT~d-~nk~kiA~sGaL~plt-rLakskdirvqrnatgaLlnmThs~EnRr~LV~aG 208 (550)
T KOG4224|consen 132 ILQMMTD-GVEVQCNAVGCITNLATFD-SNKVKIARSGALEPLT-RLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAG 208 (550)
T ss_pred HHHhcCC-CcEEEeeehhhhhhhhccc-cchhhhhhccchhhhH-hhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccC
Confidence 3444444 4568999999999988876 32 234455554 4667777788777766654 444566677763
Q ss_pred HHHHHHHhCCCCChhhHHHHHHHHHhhhhhcccccchhhhhhhhhcccCCCcccccccccccccCCCCCCccchhhhhhh
Q 002667 88 NYRNLCQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRTYDSELVNLV 167 (895)
Q Consensus 88 ~yrkLc~~L~d~dEWgQv~iL~lL~rY~r~~~~~~~ps~~f~~~~~~~~~~~e~~~~~~~~l~~q~~~~~~~~~~~~~~~ 167 (895)
...-|+.+|+.-|.=.|-+.-..+...+-++. .. ....|.
T Consensus 209 ~lpvLVsll~s~d~dvqyycttaisnIaVd~~------------~R--------------k~Laqa-------------- 248 (550)
T KOG4224|consen 209 GLPVLVSLLKSGDLDVQYYCTTAISNIAVDRR------------AR--------------KILAQA-------------- 248 (550)
T ss_pred CchhhhhhhccCChhHHHHHHHHhhhhhhhHH------------HH--------------HHHHhc--------------
Confidence 46677777777676666655444433332110 00 000000
Q ss_pred hhhcccccccccccCCCcccccccccCccccCCCCChhHHHHHHhhhhhccCCChHHHHHHHHHHHhcCCHH-HHHH---
Q 002667 168 SRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSPKE-DVKR--- 243 (895)
Q Consensus 168 ~~~~~~~~d~~~~~s~~~~~~~~~~~~~~~~~~~~d~D~~lLL~~~~pLLqS~NsAVVlaaa~l~~~lap~~-~l~~--- 243 (895)
. -.++..+..|..+..+-|-..|..+.-.++... +..-
T Consensus 249 ---------------------------e-----------p~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ 290 (550)
T KOG4224|consen 249 ---------------------------E-----------PKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVE 290 (550)
T ss_pred ---------------------------c-----------cchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHh
Confidence 0 024455556666677777777777766676532 2211
Q ss_pred --HHHHHHHHhcCCCcchHHHHHHHHHH--HHhCCc---ccc--cccccc--eeccCCcHHHHHHHHHHHHhhcC--CCC
Q 002667 244 --IVKPLLFILRSSGASKYVVLCNIQVF--AKALPH---LFV--PHYEDF--FVSSSDSYQSKALKLEILSSIVT--ESS 310 (895)
Q Consensus 244 --~~~pLv~LL~s~~eiqyvvL~~I~~i--~~~~p~---lF~--~~l~~F--fi~~sDp~~IK~lKLeIL~~Lan--e~N 310 (895)
...-|++||+++. .. .+|..+..| ...+|. +.. .|++-. ..++.|...|+.-..+.|..||- +.|
T Consensus 291 ag~lP~lv~Llqs~~-~p-lilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n 368 (550)
T KOG4224|consen 291 AGSLPLLVELLQSPM-GP-LILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHN 368 (550)
T ss_pred cCCchHHHHHHhCcc-hh-HHHHHHHHHhhcccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhh
Confidence 2344688997641 11 233333333 223441 111 122211 23578888899999999999985 778
Q ss_pred HHHHHH-----HHHHhhccCChhHHHHHHHHHHHHHhhC
Q 002667 311 ISSVFK-----EFQDYIRDPDRRFAADTVAAIGLCARKL 344 (895)
Q Consensus 311 v~~IL~-----EL~~Yv~~~D~ef~~~aI~AIG~~A~~~ 344 (895)
+..|.. .|.+.+.|...+|..+.--+|..+|..-
T Consensus 369 ~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~d 407 (550)
T KOG4224|consen 369 VSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALND 407 (550)
T ss_pred hHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhcc
Confidence 887754 6777888989999999888898888653
No 101
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.88 E-value=46 Score=38.25 Aligned_cols=252 Identities=13% Similarity=0.123 Sum_probs=142.7
Q ss_pred HHHHHhhcCCCCchhhHHHHHHHHHHhccCCcchhHHH-----HHHHHHHhcCCChhHHHHHHHHHHHhCCCCc---cch
Q 002667 14 LVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAI-----EEIVGILLNDRSPGVVGAAAAAFASICPNNF---TLI 85 (895)
Q Consensus 14 ~~aIkk~l~D~SPYVRK~AA~AI~Kly~ld~pd~~~~L-----~eil~~LL~D~~p~VvgsAv~Af~EIcP~r~---dLi 85 (895)
+.++.|.++-++--||+.|.-|+..+-+.. . ....| +.+|-.||.-.|+.|--=|-.|+..|.-++. -|.
T Consensus 169 L~pltrLakskdirvqrnatgaLlnmThs~-E-nRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~La 246 (550)
T KOG4224|consen 169 LEPLTRLAKSKDIRVQRNATGALLNMTHSR-E-NRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILA 246 (550)
T ss_pred hhhhHhhcccchhhHHHHHHHHHHHhhhhh-h-hhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHH
Confidence 445667888899999999999999887664 2 22223 2456678888888888888888777764431 111
Q ss_pred ---HHHHHHHHHhCCCCChhhHHHHHHHHHhhhhhcccccchhhhhhhhhcccCCCcccccccccccccCCCCCCccchh
Q 002667 86 ---GRNYRNLCQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRTYDSE 162 (895)
Q Consensus 86 ---hk~yrkLc~~L~d~dEWgQv~iL~lL~rY~r~~~~~~~ps~~f~~~~~~~~~~~e~~~~~~~~l~~q~~~~~~~~~~ 162 (895)
.|.+++|+.++.+-+.-.|+..=..|...+.... |..+-.
T Consensus 247 qaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~--------Yq~eiv----------------------------- 289 (550)
T KOG4224|consen 247 QAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTE--------YQREIV----------------------------- 289 (550)
T ss_pred hcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccch--------hhhHHH-----------------------------
Confidence 2345677777776666666655444443332100 000000
Q ss_pred hhhhhhhhcccccccccccCCCcccccccccCccccCCCCChhHHHHHHhhhhhccCCChHHHHHHHHHH--HhcCCHHH
Q 002667 163 LVNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVH--WIMSPKED 240 (895)
Q Consensus 163 ~~~~~~~~~~~~~d~~~~~s~~~~~~~~~~~~~~~~~~~~d~D~~lLL~~~~pLLqS~NsAVVlaaa~l~--~~lap~~~ 240 (895)
+. . . |-....||||..--.++|.+-++ +.+.|-.+
T Consensus 290 --------------~a-----------------g----~--------lP~lv~Llqs~~~plilasVaCIrnisihplNe 326 (550)
T KOG4224|consen 290 --------------EA-----------------G----S--------LPLLVELLQSPMGPLILASVACIRNISIHPLNE 326 (550)
T ss_pred --------------hc-----------------C----C--------chHHHHHHhCcchhHHHHHHHHHhhcccccCcc
Confidence 00 0 0 11233455666655666666565 34455433
Q ss_pred H----HHHHHHHHHHhcC-CC-cchHHHHHHHHHHHHhCC---c-ccccc-cccceeccCC-cHHHHHHHHHHHHhhcCC
Q 002667 241 V----KRIVKPLLFILRS-SG-ASKYVVLCNIQVFAKALP---H-LFVPH-YEDFFVSSSD-SYQSKALKLEILSSIVTE 308 (895)
Q Consensus 241 l----~~~~~pLv~LL~s-~~-eiqyvvL~~I~~i~~~~p---~-lF~~~-l~~Ffi~~sD-p~~IK~lKLeIL~~Lane 308 (895)
. ....+||+|||+- ++ |+|.-+...+.-++..+. . +|..- +....++.-| |-.++..-=--+..|+-.
T Consensus 327 ~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~ 406 (550)
T KOG4224|consen 327 VLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALN 406 (550)
T ss_pred cceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhc
Confidence 1 3467899999984 44 599888877777765332 2 23221 2223333333 556666655566666655
Q ss_pred CCHHHH------HHHHHHhhccCChhHHHHHHHHHHHHHhhCcch
Q 002667 309 SSISSV------FKEFQDYIRDPDRRFAADTVAAIGLCARKLPKM 347 (895)
Q Consensus 309 ~Nv~~I------L~EL~~Yv~~~D~ef~~~aI~AIG~~A~~~p~~ 347 (895)
+|.+.- +.-|..+.-+...++.-.+..|++.+......+
T Consensus 407 d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~~Y 451 (550)
T KOG4224|consen 407 DNDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDVEHY 451 (550)
T ss_pred cccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhhHHH
Confidence 554432 223344445556677777777777766554443
No 102
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=72.76 E-value=4.5 Score=29.37 Aligned_cols=28 Identities=43% Similarity=0.475 Sum_probs=23.5
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHhC
Q 002667 51 IEEIVGILLNDRSPGVVGAAAAAFASIC 78 (895)
Q Consensus 51 L~eil~~LL~D~~p~VvgsAv~Af~EIc 78 (895)
|++.+.++|+|.++.|-.+|+.+|.+++
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~ 28 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIA 28 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 4567788999999999999999998875
No 103
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=72.10 E-value=35 Score=31.54 Aligned_cols=31 Identities=13% Similarity=0.095 Sum_probs=16.9
Q ss_pred HHHHHHhhccCChhHHHHHHHHHHHHHhhCc
Q 002667 315 FKEFQDYIRDPDRRFAADTVAAIGLCARKLP 345 (895)
Q Consensus 315 L~EL~~Yv~~~D~ef~~~aI~AIG~~A~~~p 345 (895)
+++...++.|+..-++..++.-++++..+-.
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~ 35 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS 35 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCC
Confidence 4445555555555556666655555555443
No 104
>smart00543 MIF4G Middle domain of eukaryotic initiation factor 4G (eIF4G). Also occurs in NMD2p and CBP80. The domain is rich in alpha-helices and may contain multiple alpha-helical repeats. In eIF4G, this domain binds eIF4A, eIF3, RNA and DNA. Ponting (TiBS) "Novel eIF4G domain homologues (in press)
Probab=71.97 E-value=1.2e+02 Score=30.74 Aligned_cols=57 Identities=19% Similarity=0.259 Sum_probs=40.2
Q ss_pred HHHhhcCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHHHhhCcchHHHHHHHHHHHHH
Q 002667 301 ILSSIVTESSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIR 360 (895)
Q Consensus 301 IL~~Lane~Nv~~IL~EL~~Yv~~~D~ef~~~aI~AIG~~A~~~p~~a~~cl~~Ll~LLs 360 (895)
++-.| +++|+..++.||..+..+ +++.....++.|-.+|...|.....+ -.|+..+.
T Consensus 7 ~lnkL-s~~n~~~~~~~l~~~~~~-~~~~~~~l~~~i~~~~~~~~~~~~~y-a~L~~~l~ 63 (200)
T smart00543 7 LINKL-SPSNFESIIKELLKLNNS-DKNLRKYILELIFEKAVEEPNFIPAY-ARLCALLN 63 (200)
T ss_pred HHhhC-CHHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHHHHcCcchHHHH-HHHHHHHH
Confidence 34444 479999999999987654 45788889999999998888665433 33344443
No 105
>KOG2140 consensus Uncharacterized conserved protein [General function prediction only]
Probab=71.04 E-value=54 Score=39.25 Aligned_cols=116 Identities=17% Similarity=0.257 Sum_probs=64.4
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHH---------hhccC------ChhHHHHHHHHHHHHHhhCcchHHHHHHHHHHHHH
Q 002667 296 ALKLEILSSIVTESSISSVFKEFQD---------YIRDP------DRRFAADTVAAIGLCARKLPKMANTCVEGLLALIR 360 (895)
Q Consensus 296 ~lKLeIL~~Lane~Nv~~IL~EL~~---------Yv~~~------D~ef~~~aI~AIG~~A~~~p~~a~~cl~~Ll~LLs 360 (895)
++++.=|.+=+|.+|+..|++||.. |+++. ..-|.-.-..-++.+-.+||.+....+.-|+-.+.
T Consensus 165 kksInglInkvn~sNi~~ii~eLfqeNiirgRgl~crsv~~aq~asp~ft~vyaALvAviNskfP~IgElLlkrLilqf~ 244 (739)
T KOG2140|consen 165 KKSINGLINKVNASNIQEIIRELFQENIIRGRGLLCRSVMQAQAASPGFTPVYAALVAVINSKFPQIGELLLKRLILQFK 244 (739)
T ss_pred HHHhHHHHhhhhHHHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCCCcHHHHHHHHHHccCCchHHHHHHHHHHHHHH
Confidence 3455556677899999999999765 33321 11122111222334567899999888877765554
Q ss_pred hhhccccccCCCCCCchhh-hHHHHHHHHHhhCCcchHHHHHHHHH-hhhccCchhhHHhhh
Q 002667 361 QELLTSDIESGNGEADVLI-QSIISIKSIIKQDPSCHEKVIIQLFR-SLDSIKVPEARVMII 420 (895)
Q Consensus 361 ~~~~~~~~~~~~~~~~vv~-E~V~vik~Llq~~P~~~~~ii~~L~~-~ld~i~~p~ArAsIi 420 (895)
..+ ++++.++. -++..|..|+ ++.-.|+-++.+++- +|+.-++.....+|.
T Consensus 245 r~f--------~RnDk~~c~~~~kfiahLi-nq~VahEIv~Leil~lLLe~PTddSvevaI~ 297 (739)
T KOG2140|consen 245 RSF--------RRNDKVSCLNASKFIAHLI-NQQVAHEIVALEILTLLLERPTDDSVEVAIA 297 (739)
T ss_pred HHh--------cccchHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCCCchHHHHHH
Confidence 422 33333332 2333344443 444456666555554 556666666655543
No 106
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=71.03 E-value=95 Score=36.36 Aligned_cols=125 Identities=17% Similarity=0.213 Sum_probs=78.1
Q ss_pred hhhhHHHHHHHHHhhCC----cchHHHHHHHHHhhhccC-chhhHHhhhhhhccccCCCCCccchHHHHHHHHHHhhccC
Q 002667 377 VLIQSIISIKSIIKQDP----SCHEKVIIQLFRSLDSIK-VPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSE 451 (895)
Q Consensus 377 vv~E~V~vik~Llq~~P----~~~~~ii~~L~~~ld~i~-~p~ArAsIiWLLGEY~~~~e~ip~ia~dvLr~l~k~F~~E 451 (895)
-+.|.+..+..|+...+ +.|...+.+..--|.... .+.-...+..++..|.. +-|..+..+++.+.+.+..-
T Consensus 191 gI~elLeil~sii~gf~~plk~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~---kdp~l~~~~i~~llk~WP~t 267 (409)
T PF01603_consen 191 GIAELLEILGSIINGFAVPLKEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLE---KDPSLAEPVIKGLLKHWPKT 267 (409)
T ss_dssp THHHHHHHHHHHHTT--SS--HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHH---H-GGGHHHHHHHHHHHS-SS
T ss_pred CHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHH---hCchhHHHHHHHHHHhCCCC
Confidence 47888888888887643 223333333322222222 23334455666666663 45778999999999999888
Q ss_pred cHHHHHHHHHHHHHHhhhcCCCC-hHHHHHHHHHHHHHHccCCChHHHhHHHHHH
Q 002667 452 AVETKLQILNTTIKVLLCAKGGD-MWTITRLFSYLLELAECDLNYDVRDRARFFK 505 (895)
Q Consensus 452 ~~~VKlqILtaaaKL~~~~p~e~-~~~l~~L~qyvL~la~~D~n~DVRDRAr~y~ 505 (895)
...-....|+-...++-..+.+. ......+|+. +..|..+.++.|-.||.++|
T Consensus 268 ~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~-la~ci~S~h~qVAErAl~~w 321 (409)
T PF01603_consen 268 NSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKR-LAKCISSPHFQVAERALYFW 321 (409)
T ss_dssp -HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHH-HHHHHTSSSHHHHHHHHGGG
T ss_pred CchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH-HHHHhCCCCHHHHHHHHHHH
Confidence 77777888888888877665432 2234455654 45567888999999999887
No 107
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=70.09 E-value=30 Score=37.94 Aligned_cols=101 Identities=18% Similarity=0.240 Sum_probs=71.9
Q ss_pred HHHHHhhcCCCCchhhHHHHHHHHHHhccCCcchhHHHH----HHHHHHhcC-CChhHHHHHHHHHHHhCC--CCccchH
Q 002667 14 LVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIE----EIVGILLND-RSPGVVGAAAAAFASICP--NNFTLIG 86 (895)
Q Consensus 14 ~~aIkk~l~D~SPYVRK~AA~AI~Kly~ld~pd~~~~L~----eil~~LL~D-~~p~VvgsAv~Af~EIcP--~r~dLih 86 (895)
+.-|.+.+.+++|-||..|..|+.-+-.- .+....+. .+++..+.+ -+..|--+++.++..+.- +.=.++.
T Consensus 56 i~lI~~lL~~p~~~vr~~AL~aL~Nls~~--~en~~~Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~ 133 (254)
T PF04826_consen 56 ISLIGSLLNDPNPSVREKALNALNNLSVN--DENQEQIKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLA 133 (254)
T ss_pred HHHHHHHcCCCChHHHHHHHHHHHhcCCC--hhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHH
Confidence 34567889999999999999998865322 22223333 334434443 366777888999988853 2224566
Q ss_pred HHHHHHHHhCCCCChhhHHHHHHHHHhhhh
Q 002667 87 RNYRNLCQILPDVEEWGQILLIEILLRYVV 116 (895)
Q Consensus 87 k~yrkLc~~L~d~dEWgQv~iL~lL~rY~r 116 (895)
+.+..|+.+|..-++-.|+.+|.+|...+-
T Consensus 134 ~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~ 163 (254)
T PF04826_consen 134 NYIPDLLSLLSSGSEKTKVQVLKVLVNLSE 163 (254)
T ss_pred hhHHHHHHHHHcCChHHHHHHHHHHHHhcc
Confidence 678889999999899999999999998863
No 108
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=70.08 E-value=31 Score=38.54 Aligned_cols=65 Identities=14% Similarity=0.178 Sum_probs=44.7
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHHHHHhC---CCCccchHH--------HHHHHHHhCCCCChhhHHHHHHHHHhhhh
Q 002667 50 AIEEIVGILLNDRSPGVVGAAAAAFASIC---PNNFTLIGR--------NYRNLCQILPDVEEWGQILLIEILLRYVV 116 (895)
Q Consensus 50 ~L~eil~~LL~D~~p~VvgsAv~Af~EIc---P~r~dLihk--------~yrkLc~~L~d~dEWgQv~iL~lL~rY~r 116 (895)
.+..++.++ -.++.++..++..+.+++ |.+.++++. .|..+++.+..-|.+-+...+.+|+....
T Consensus 59 ~~l~lL~~~--~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~ 134 (312)
T PF03224_consen 59 LFLNLLNKL--SSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLS 134 (312)
T ss_dssp ---HHHHHH-----HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHc--cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 344455554 467789999999999887 556666665 68889998888899999999999988764
No 109
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=69.85 E-value=2.2e+02 Score=34.48 Aligned_cols=193 Identities=11% Similarity=0.111 Sum_probs=112.0
Q ss_pred HHHHHHHHHHHHhhcCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHHHhhCcchHHHHHHHHHHHHHhhhccccccCC
Q 002667 292 YQSKALKLEILSSIVTESSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESG 371 (895)
Q Consensus 292 ~~IK~lKLeIL~~Lane~Nv~~IL~EL~~Yv~~~D~ef~~~aI~AIG~~A~~~p~~a~~cl~~Ll~LLs~~~~~~~~~~~ 371 (895)
...|..=+|.|....+...+..|.+.+..-- .. ..++.+.+..+....+.-....++.+..|+..+..
T Consensus 340 ~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~--~~---~~ea~~~~~~~~~~~~~Pt~~~l~~l~~l~~~~~~------- 407 (574)
T smart00638 340 KKARRIFLDAVAQAGTPPALKFIKQWIKNKK--IT---PLEAAQLLAVLPHTARYPTEEILKALFELAESPEV------- 407 (574)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCC--CC---HHHHHHHHHHHHHhhhcCCHHHHHHHHHHhcCccc-------
Confidence 4588888999999999999999988777521 11 13445555555555555666788889998874211
Q ss_pred CCCCchhhh-HHHHHHHHHhh----CCcch----HHHHHHHHHhhhcc---CchhhHHhhhhhhccccCCCCCccchHHH
Q 002667 372 NGEADVLIQ-SIISIKSIIKQ----DPSCH----EKVIIQLFRSLDSI---KVPEARVMIIWMVGEYSSVGVKIPRMLTT 439 (895)
Q Consensus 372 ~~~~~vv~E-~V~vik~Llq~----~P~~~----~~ii~~L~~~ld~i---~~p~ArAsIiWLLGEY~~~~e~ip~ia~d 439 (895)
....+++. ++..+-.++++ .+..+ ...+..|.+.+... .+..-+..+|=-||--+ .|.+++-
T Consensus 408 -~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g-----~~~~i~~ 481 (574)
T smart00638 408 -QKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAG-----HPSSIKV 481 (574)
T ss_pred -cccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccC-----ChhHHHH
Confidence 11224544 45566666664 23323 44555555554432 22333444555666544 4554433
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHccCCChHHHhHHHHHHHHccCC
Q 002667 440 VLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTITRLFSYLLELAECDLNYDVRDRARFFKKLFSHN 511 (895)
Q Consensus 440 vLr~l~k~F~~E~~~VKlqILtaaaKL~~~~p~e~~~~l~~L~qyvL~la~~D~n~DVRDRAr~y~~LL~~~ 511 (895)
|..++..=..-+..+|.+.+.++-++-...|...++. +++ ++. ..+.++|||==|+ ..|+.+.
T Consensus 482 -l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v~~~---l~~-i~~--n~~e~~EvRiaA~--~~lm~t~ 544 (574)
T smart00638 482 -LEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKVQEV---LLP-IYL--NRAEPPEVRMAAV--LVLMETK 544 (574)
T ss_pred -HHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHHHHH---HHH-HHc--CCCCChHHHHHHH--HHHHhcC
Confidence 3333332223457899999999998877777643322 222 221 1346888877775 4556553
No 110
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=69.73 E-value=73 Score=42.56 Aligned_cols=148 Identities=9% Similarity=0.122 Sum_probs=89.3
Q ss_pred CHHHHHHHHHHhhccCChhHHHHHHHHHHHHHhhCcchHH--HHHHHHHHHHHhhhccccccCCCCCCchhhhHHHH-HH
Q 002667 310 SISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMAN--TCVEGLLALIRQELLTSDIESGNGEADVLIQSIIS-IK 386 (895)
Q Consensus 310 Nv~~IL~EL~~Yv~~~D~ef~~~aI~AIG~~A~~~p~~a~--~cl~~Ll~LLs~~~~~~~~~~~~~~~~vv~E~V~v-ik 386 (895)
++...|+-+...+..+-..++.+|++++..++..-|.+.. .+..+.-.-+ +.....|.|+++- +-
T Consensus 813 sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~------------~DssasVREAaldLvG 880 (1692)
T KOG1020|consen 813 SFDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRL------------NDSSASVREAALDLVG 880 (1692)
T ss_pred hhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhh------------ccchhHHHHHHHHHHh
Confidence 4455566666666666677888888888888876665432 1111111111 1122457776652 22
Q ss_pred HHHhhCCcchHHHHHHHHHhhhccCch--hhHHhhhhhhccccCCCCCccchHHHHHHHHHHhhccCcHHHHHHHHHHHH
Q 002667 387 SIIKQDPSCHEKVIIQLFRSLDSIKVP--EARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTI 464 (895)
Q Consensus 387 ~Llq~~P~~~~~ii~~L~~~ld~i~~p--~ArAsIiWLLGEY~~~~e~ip~ia~dvLr~l~k~F~~E~~~VKlqILtaaa 464 (895)
.-+--+|+...+.-.+++ ..|.++ ..|-.+|-|+-+-|...+..+. .+++.-+|..+..+|+..+|-...-.+.
T Consensus 881 rfvl~~~e~~~qyY~~i~---erIlDtgvsVRKRvIKIlrdic~e~pdf~~-i~~~cakmlrRv~DEEg~I~kLv~etf~ 956 (1692)
T KOG1020|consen 881 RFVLSIPELIFQYYDQII---ERILDTGVSVRKRVIKILRDICEETPDFSK-IVDMCAKMLRRVNDEEGNIKKLVRETFL 956 (1692)
T ss_pred hhhhccHHHHHHHHHHHH---hhcCCCchhHHHHHHHHHHHHHHhCCChhh-HHHHHHHHHHHhccchhHHHHHHHHHHH
Confidence 222334554333333333 345443 5777889999887764444443 4677777777888998888888888899
Q ss_pred HHhhhcCCC
Q 002667 465 KVLLCAKGG 473 (895)
Q Consensus 465 KL~~~~p~e 473 (895)
|+|+.-+..
T Consensus 957 klWF~p~~~ 965 (1692)
T KOG1020|consen 957 KLWFTPVPE 965 (1692)
T ss_pred HHhccCCCc
Confidence 999987543
No 111
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=69.15 E-value=8.2 Score=40.12 Aligned_cols=88 Identities=23% Similarity=0.189 Sum_probs=61.4
Q ss_pred HHHHHHHHhhcCCCCchhhHHHHHHHHHHhccCCcchhHHHHHHHHHHhcCCChhHHHHHHHHHHHhCCCCccchHHHHH
Q 002667 11 PLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNNFTLIGRNYR 90 (895)
Q Consensus 11 piv~~aIkk~l~D~SPYVRK~AA~AI~Kly~ld~pd~~~~L~eil~~LL~D~~p~VvgsAv~Af~EIcP~r~dLihk~yr 90 (895)
|.+..-+.+.+.+.++|+||.|..+..+.+.. +..+.+.+++..++.|.+..|-=+.--+|.++.-..-+.+. +
T Consensus 119 ~~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~---~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~~~~v~---~ 192 (213)
T PF08713_consen 119 PEALELLEKWAKSDNEWVRRAAIVMLLRYIRK---EDFDELLEIIEALLKDEEYYVQKAIGWALREIGKKDPDEVL---E 192 (213)
T ss_dssp GGHHHHHHHHHHCSSHHHHHHHHHCTTTHGGG---CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-HHHHH---H
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhCHHHHH---H
Confidence 45677888999999999999999998876655 35677888999999999999999888899999755433332 2
Q ss_pred HHHHhCCCCChhhH
Q 002667 91 NLCQILPDVEEWGQ 104 (895)
Q Consensus 91 kLc~~L~d~dEWgQ 104 (895)
.|-.....+..|+.
T Consensus 193 ~l~~~~~~~~~~~~ 206 (213)
T PF08713_consen 193 FLQKNSDRLSRWTL 206 (213)
T ss_dssp HHHHS-----HHHH
T ss_pred HHHHCcccCchhHH
Confidence 22223333555553
No 112
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.78 E-value=25 Score=42.23 Aligned_cols=110 Identities=15% Similarity=0.297 Sum_probs=70.8
Q ss_pred hHHHHHHHHHHHHHhhCcchHHHHHHHHHHHHHhhhccccccCCCCCCchhhhHHH-HHHHHHhhCCcchHHHHHHHHHh
Q 002667 328 RFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADVLIQSII-SIKSIIKQDPSCHEKVIIQLFRS 406 (895)
Q Consensus 328 ef~~~aI~AIG~~A~~~p~~a~~cl~~Ll~LLs~~~~~~~~~~~~~~~~vv~E~V~-vik~Llq~~P~~~~~ii~~L~~~ 406 (895)
+|+.+.+..+..+|--+... .|+..+..-+.. +...+...|+.. .++.++++-+.....++..+.+.
T Consensus 367 ~fR~~v~dvl~Dv~~iigs~--e~lk~~~~~l~e----------~~~~We~~EAaLF~l~~~~~~~~~~e~~i~pevl~~ 434 (559)
T KOG2081|consen 367 EFRLKVGDVLKDVAFIIGSD--ECLKQMYIRLKE----------NNASWEEVEAALFILRAVAKNVSPEENTIMPEVLKL 434 (559)
T ss_pred HHHHHHHHHHHHHHHHhCcH--HHHHHHHHHHcc----------CCCchHHHHHHHHHHHHHhccCCccccchHHHHHHH
Confidence 45666666666666555443 455555554442 112345666654 56667766665556677777777
Q ss_pred hhccC--chhhHHhhhhhhccccCCCCCccchHHHHHHHHHHhhcc
Q 002667 407 LDSIK--VPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKS 450 (895)
Q Consensus 407 ld~i~--~p~ArAsIiWLLGEY~~~~e~ip~ia~dvLr~l~k~F~~ 450 (895)
+-++. .| .|..-+-++|+|++-.+..|.+..-+++++...+..
T Consensus 435 i~nlp~Q~~-~~~ts~ll~g~~~ew~~~~p~~le~v~~~~~~~~~~ 479 (559)
T KOG2081|consen 435 ICNLPEQAP-LRYTSILLLGEYSEWVEQHPELLEPVLRYIRQGLQL 479 (559)
T ss_pred HhCCccchh-HHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhhh
Confidence 76553 34 777778999999987777888888888887755543
No 113
>KOG3723 consensus PH domain protein Melted [Signal transduction mechanisms]
Probab=67.52 E-value=33 Score=41.14 Aligned_cols=135 Identities=13% Similarity=0.109 Sum_probs=74.4
Q ss_pred HHHHHHHHhhccCChhHHHHHHHHHHHHHhhCcchHHHHHH---HHHHHHHhhhccccc----cCCCCCCchh-----hh
Q 002667 313 SVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVE---GLLALIRQELLTSDI----ESGNGEADVL-----IQ 380 (895)
Q Consensus 313 ~IL~EL~~Yv~~~D~ef~~~aI~AIG~~A~~~p~~a~~cl~---~Ll~LLs~~~~~~~~----~~~~~~~~vv-----~E 380 (895)
.+.+-+.+..++...-|..++|+.+|.++..-+.+....|. +||++++.=. .-.. +|+..=..++ .+
T Consensus 137 fL~rgn~el~rn~~~ylslaai~~adLL~~hTEv~~~siLSgn~~LLrvlS~Vy-e~~P~~i~PhlP~l~~lL~q~~p~~ 215 (851)
T KOG3723|consen 137 FLHRGNKELCRNMSNYLSLAAITKADLLADHTEVIVKSILSGNTMLLRVLSAVY-EKQPQPINPHLPELLALLSQLEPEQ 215 (851)
T ss_pred HHhccChhhcccchhhhhHHHHhhhhhccCchHHHHHHHhccchHHHHHHHHHH-hcCCCccCcccHHHHHHhcCCCHHH
Confidence 33444444445555557777777777777655555555555 3555554300 0000 0000000000 01
Q ss_pred --HHHHHH-HHHhhCCcchHHHHHHHHHhhhccCchhhHHhhhhhhccccCCCCCccchHHHHHHHHHHhhccC
Q 002667 381 --SIISIK-SIIKQDPSCHEKVIIQLFRSLDSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSE 451 (895)
Q Consensus 381 --~V~vik-~Llq~~P~~~~~ii~~L~~~ld~i~~p~ArAsIiWLLGEY~~~~e~ip~ia~dvLr~l~k~F~~E 451 (895)
.+..+- .|.|+.|+..+..+..|+..+.+-+....+-.|+-.|..|+.. ..|. .-+.+|.+++.|..-
T Consensus 216 ~~ll~~l~~LI~Qk~~evL~~ciP~L~g~l~ds~~~~i~~~Ilk~ia~~~pv--~l~~-~~E~l~e~~~~~p~~ 286 (851)
T KOG3723|consen 216 YHLLRLLHVLIKQKQLEVLQKCIPFLIGHLKDSTHNDIILNILKEIAVYEPV--ALNS-FLEMLKEIGERFPYL 286 (851)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHhccccchhHHHHHHHHHHhcCcc--chhh-HHHHHHHHHHhCCCc
Confidence 111111 2346677777888888888877766777888888999998753 1233 456677788777654
No 114
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=66.35 E-value=2.6e+02 Score=36.91 Aligned_cols=213 Identities=12% Similarity=0.065 Sum_probs=122.2
Q ss_pred HHHHHHHHHHHHhcCCCc-ch---HHHHHHHHHHHHhCCcc---ccc----ccccceeccCCcHHHHHHHHHHHHhhcCC
Q 002667 240 DVKRIVKPLLFILRSSGA-SK---YVVLCNIQVFAKALPHL---FVP----HYEDFFVSSSDSYQSKALKLEILSSIVTE 308 (895)
Q Consensus 240 ~l~~~~~pLv~LL~s~~e-iq---yvvL~~I~~i~~~~p~l---F~~----~l~~Ffi~~sDp~~IK~lKLeIL~~Lane 308 (895)
.+..+++|.-+|+.+.+. .. ..+|.+|.-.+.++-+. |.- .++.| .+.....-+.+..++++
T Consensus 193 flsl~~~~~yrllEn~~~~k~~~t~~ai~~ilg~s~k~~~~~~t~~~rilq~l~~f-------ehl~~~~ad~v~l~~sk 265 (1251)
T KOG0414|consen 193 FLSLIVDPIYRLLENEHVNKNSSTKDAIFRILGSSVKRYNQCSTFASRILQNLRYF-------EHLAVHVADAVTLVRSK 265 (1251)
T ss_pred HHHHHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHh
Confidence 477888999999976322 11 23344444333322211 111 11111 12233334566777788
Q ss_pred CCHHHHHHHHHHhhccCCh-----hHHHHHHHHHHHHHhhCcchHHHHHHHHHHHHHhhhccccccCCCCCCchhhhHHH
Q 002667 309 SSISSVFKEFQDYIRDPDR-----RFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADVLIQSII 383 (895)
Q Consensus 309 ~Nv~~IL~EL~~Yv~~~D~-----ef~~~aI~AIG~~A~~~p~~a~~cl~~Ll~LLs~~~~~~~~~~~~~~~~vv~E~V~ 383 (895)
.|...|+..+..-+.+... ......-.-+..++.+.|...-+-|..|++||.. +.+-+.-+|+
T Consensus 266 y~~~sl~~~Iir~I~~~~~~~~d~~g~k~v~~fL~elS~~~P~l~~~~l~~lv~lld~------------es~~lRnavl 333 (1251)
T KOG0414|consen 266 YGSVSLAGNIIRSIGSPEPNEKDCAGPKIVGNFLVELSERVPKLMLRQLTLLVDLLDS------------ESYTLRNAVL 333 (1251)
T ss_pred cccHHHHHHHHHHhcccchhcccccchhhHHHHHHHHHHHhHHHHHHHHHHHHHhcCC------------chHHHHHHHH
Confidence 8888888777776654432 2333334555678889999998999999998753 2333444443
Q ss_pred HH-HHHHh---hCCcc--hH-----HHHHHHHHhhhccCchhhHHhhhhhhccccCCCCCccchHHHHHHHHHHhhccCc
Q 002667 384 SI-KSIIK---QDPSC--HE-----KVIIQLFRSLDSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEA 452 (895)
Q Consensus 384 vi-k~Llq---~~P~~--~~-----~ii~~L~~~ld~i~~p~ArAsIiWLLGEY~~~~e~ip~ia~dvLr~l~k~F~~E~ 452 (895)
.+ -+++. ++++. +. ..+..|.+.+-++ .+-.|.-++-+.-.-++....-+....+|++..+.+..+-+
T Consensus 334 ei~~n~V~~~l~d~e~~~~sk~~r~~~le~l~erl~Dv-sa~vRskVLqv~~~l~~~~s~p~~~~~eV~~la~grl~DkS 412 (1251)
T KOG0414|consen 334 EICANLVASELRDEELEEMSKSLRDELLELLRERLLDV-SAYVRSKVLQVFRRLFQQHSIPLGSRTEVLELAIGRLEDKS 412 (1251)
T ss_pred HHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHhhcc-cHHHHHHHHHHHHHHHHccCCCccHHHHHHHHHhccccccc
Confidence 22 23322 23331 11 1233333333333 25666666655544333211223345788888888888888
Q ss_pred HHHHHHHHHHHHHHhhhcCC
Q 002667 453 VETKLQILNTTIKVLLCAKG 472 (895)
Q Consensus 453 ~~VKlqILtaaaKL~~~~p~ 472 (895)
..||-..+.+..++..++|-
T Consensus 413 slVRk~Ai~Ll~~~L~~~Pf 432 (1251)
T KOG0414|consen 413 SLVRKNAIQLLSSLLDRHPF 432 (1251)
T ss_pred HHHHHHHHHHHHHHHhcCCc
Confidence 99999999999999999883
No 115
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=65.80 E-value=3.7e+02 Score=34.20 Aligned_cols=91 Identities=21% Similarity=0.275 Sum_probs=60.2
Q ss_pred HHHHHHhhcCCCCchhhHHHHHHHHHHhccCCcc--hhHHHHHHHHHHhcCCChhHHHHHHHHHHHhCC---CCccchHH
Q 002667 13 VLVAVGKCARDPSVFVRKCAANALPKLHELRQEE--ITSAIEEIVGILLNDRSPGVVGAAAAAFASICP---NNFTLIGR 87 (895)
Q Consensus 13 v~~aIkk~l~D~SPYVRK~AA~AI~Kly~ld~pd--~~~~L~eil~~LL~D~~p~VvgsAv~Af~EIcP---~r~dLihk 87 (895)
+..-.+....|..|-||+++|--+.++-+.- +. ....+.+....|++|..-.|.-+|+.++..+.+ ...+..|.
T Consensus 238 lr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~-~~~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~d~~~~ 316 (759)
T KOG0211|consen 238 LRPIVQSLCQDDTPMVRRAVASNLGNIAKVL-ESEIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDDDVVKS 316 (759)
T ss_pred HHHHHHhhccccchhhHHHHHhhhHHHHHHH-HHHHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCchhhhhh
Confidence 3445677889999999999998888777654 33 455566777788888888898888888777642 22244444
Q ss_pred HHHHHHHhCCCCChhhHH
Q 002667 88 NYRNLCQILPDVEEWGQI 105 (895)
Q Consensus 88 ~yrkLc~~L~d~dEWgQv 105 (895)
-...+.+...| -.|-+.
T Consensus 317 ~~~~l~~~~~d-~~~~v~ 333 (759)
T KOG0211|consen 317 LTESLVQAVED-GSWRVS 333 (759)
T ss_pred hhHHHHHHhcC-hhHHHH
Confidence 44444444433 334443
No 116
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=65.64 E-value=5.5 Score=49.54 Aligned_cols=54 Identities=9% Similarity=0.174 Sum_probs=39.1
Q ss_pred ccCCcHHHHHHHHHHHHhhcCCCCHHHHHHHHHHh--------hc--------cCChhHHHHHHHHHHHH
Q 002667 287 SSSDSYQSKALKLEILSSIVTESSISSVFKEFQDY--------IR--------DPDRRFAADTVAAIGLC 340 (895)
Q Consensus 287 ~~sDp~~IK~lKLeIL~~Lane~Nv~~IL~EL~~Y--------v~--------~~D~ef~~~aI~AIG~~ 340 (895)
-.+++..||.++-..|+-|+-...|.+||..|--+ .+ +....|.+.|++-|.++
T Consensus 753 P~t~aD~IRalAc~~L~GLaR~~tVrQIltKLpLvt~~~~q~lm~ePV~~Dkr~~H~~fck~A~~Ll~~~ 822 (1516)
T KOG1832|consen 753 PPTTADCIRALACRVLLGLARDDTVRQILTKLPLVTNERAQILMAEPVTYDKRHEHLQFCKLASALLKEA 822 (1516)
T ss_pred CCCcHHHHHHHHHHHHhccccCcHHHHHHHhCccccchHHHHHhhCcccccchhHHHHHHHHHHHHHHHH
Confidence 35778899999999999999999999999866322 21 12235777777666554
No 117
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=65.49 E-value=4.2e+02 Score=34.72 Aligned_cols=108 Identities=20% Similarity=0.330 Sum_probs=76.0
Q ss_pred chhhhHHHHHHH----HhhcCCCCchhhHHHHHHHHHHhccCCcc-hhHHHHHH----HHHHhcCCChhHHHHHHHHHHH
Q 002667 6 LHVISPLVLVAV----GKCARDPSVFVRKCAANALPKLHELRQEE-ITSAIEEI----VGILLNDRSPGVVGAAAAAFAS 76 (895)
Q Consensus 6 v~~I~piv~~aI----kk~l~D~SPYVRK~AA~AI~Kly~ld~pd-~~~~L~ei----l~~LL~D~~p~VvgsAv~Af~E 76 (895)
++.|+|+++.++ +++..-..-.||-+|++.+--+++-..|. .++-+..+ +..-+=|++-.+-.||.+||.|
T Consensus 418 l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlqE 497 (1133)
T KOG1943|consen 418 LEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAALQE 497 (1133)
T ss_pred HHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHHH
Confidence 446667666654 44555666779999999888877765354 33433323 3334459999999999999999
Q ss_pred hC------CCCccch-----------HHHHHHHHHhCCCCChhhHHHHHHHHHh
Q 002667 77 IC------PNNFTLI-----------GRNYRNLCQILPDVEEWGQILLIEILLR 113 (895)
Q Consensus 77 Ic------P~r~dLi-----------hk~yrkLc~~L~d~dEWgQv~iL~lL~r 113 (895)
.. |..++|+ .+.|..||.-+.+++.+.+.++=++++.
T Consensus 498 ~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~ 551 (1133)
T KOG1943|consen 498 NVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTK 551 (1133)
T ss_pred HhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhc
Confidence 96 4445553 3358888888888888888877777765
No 118
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=64.50 E-value=3.3e+02 Score=35.32 Aligned_cols=102 Identities=20% Similarity=0.180 Sum_probs=60.4
Q ss_pred HHHHHHhhhhhccCCChHHHHHHHHHHHhcCCH---------HHHHH--------HHHHHHHHhcC----CCcchHHHHH
Q 002667 206 VKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSPK---------EDVKR--------IVKPLLFILRS----SGASKYVVLC 264 (895)
Q Consensus 206 ~~lLL~~~~pLLqS~NsAVVlaaa~l~~~lap~---------~~l~~--------~~~pLv~LL~s----~~eiqyvvL~ 264 (895)
.--+++.++-+|||.++++|+++.-+++.+... ..+.. +-.....||.. ..++++++|.
T Consensus 125 Wp~l~d~i~~~Lqs~~~~~vy~aLl~l~qL~k~ye~k~~eeR~~l~~~v~~~fP~il~~~~~ll~~~s~~s~el~klIlK 204 (1010)
T KOG1991|consen 125 WPGLLDKIKNLLQSQDANHVYGALLCLYQLFKTYEWKKDEERQPLGEAVEELFPDILQIFNGLLSQESYQSVELQKLILK 204 (1010)
T ss_pred chhHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHH
Confidence 345789999999999999999999888776421 11222 22222355543 2456777777
Q ss_pred HHHHHHHh-------CCcccccccccce-ecc---------CCcH--------HHHHHHHHHHHhhcC
Q 002667 265 NIQVFAKA-------LPHLFVPHYEDFF-VSS---------SDSY--------QSKALKLEILSSIVT 307 (895)
Q Consensus 265 ~I~~i~~~-------~p~lF~~~l~~Ff-i~~---------sDp~--------~IK~lKLeIL~~Lan 307 (895)
.....+.. +|+.|.+....|. +.. -||. -.|+=.+-+|+.|..
T Consensus 205 ifks~~~~~LP~~L~~~~~f~~W~~l~l~i~~rpvP~E~l~~d~e~R~~~~wwK~KKWa~~~L~Rlf~ 272 (1010)
T KOG1991|consen 205 IFKSLIYYELPLELSAPETFTSWMELFLSILNRPVPVEVLSLDPEDRSSWPWWKCKKWALHILNRLFE 272 (1010)
T ss_pred HHHHHHHHhCCHHhhCchhHHHHHHHHHHHHcCCCChhcccCChhhcccccchhhHHHHHHHHHHHHH
Confidence 55554432 3455555544332 211 1111 256667888888864
No 119
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=64.43 E-value=33 Score=41.60 Aligned_cols=102 Identities=19% Similarity=0.178 Sum_probs=69.6
Q ss_pred chhhhHHHHHHHHhhcCCCCchhhHHHHHHHHHHhccCCcchhHHHHHHHHHHhcCCChhH---HHHHHHHHHHhCCCCc
Q 002667 6 LHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGV---VGAAAAAFASICPNNF 82 (895)
Q Consensus 6 v~~I~piv~~aIkk~l~D~SPYVRK~AA~AI~Kly~ld~pd~~~~L~eil~~LL~D~~p~V---vgsAv~Af~EIcP~r~ 82 (895)
-|++..--+.|+...+.|.+.-||+.|+-+|+.+.+-. |+....+.++|.+||.-.++.. |-+|++.+....|..
T Consensus 53 FP~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~-~~~v~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k~- 130 (556)
T PF05918_consen 53 FPDLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDN-PEHVSKVADVLVQLLQTDDPVELDAVKNSLMSLLKQDPKG- 130 (556)
T ss_dssp -GGGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T---T-HHHHHHHHHHHTT---HHHHHHHHHHHHHHHHH-HHH-
T ss_pred ChhhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhH-HHHHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCcHH-
Confidence 47788889999999999999999999999999999988 9999999999999997656544 445555555554443
Q ss_pred cchHHHHHHHHHhCC---CCChhhHHHHHHHHHhh
Q 002667 83 TLIGRNYRNLCQILP---DVEEWGQILLIEILLRY 114 (895)
Q Consensus 83 dLihk~yrkLc~~L~---d~dEWgQv~iL~lL~rY 114 (895)
...-|+..+. .-||--.-.+|.+|.-.
T Consensus 131 -----tL~~lf~~i~~~~~~de~~Re~~lkFl~~k 160 (556)
T PF05918_consen 131 -----TLTGLFSQIESSKSGDEQVRERALKFLREK 160 (556)
T ss_dssp -----HHHHHHHHHH---HS-HHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHhcccCchHHHHHHHHHHHHH
Confidence 4566777665 45666666677776543
No 120
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=64.23 E-value=38 Score=37.29 Aligned_cols=184 Identities=15% Similarity=0.275 Sum_probs=95.8
Q ss_pred hhhhccCCCh---HHHHHHHHHHHhcCCH----HHHHHHHHHH--HHHhcCCCcchHHHHHHHHHHHHhCCccccccccc
Q 002667 213 TSPLLWSHNS---AVVLAAAGVHWIMSPK----EDVKRIVKPL--LFILRSSGASKYVVLCNIQVFAKALPHLFVPHYED 283 (895)
Q Consensus 213 ~~pLLqS~Ns---AVVlaaa~l~~~lap~----~~l~~~~~pL--v~LL~s~~eiqyvvL~~I~~i~~~~p~lF~~~l~~ 283 (895)
+-|+||+... +..-+.+.+|-+++|+ ..-.++-++| +..+.++|++|-..|+ ..-|-++-||++.
T Consensus 29 La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~~Fl~------a~iplyLyPfL~t 102 (262)
T PF04078_consen 29 LAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRMPFLK------AHIPLYLYPFLNT 102 (262)
T ss_dssp HHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHHHHHH------TTGGGGGHHHHH-
T ss_pred hhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHHHHHH------cCchhhehhhhhc
Confidence 4577886653 4566788888888875 3345565554 4556678998877665 3446666677643
Q ss_pred ceeccCCc-HHHHHHHHHHHHhhcCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHHHhhCcc-hHHHHHHHHHHHHHh
Q 002667 284 FFVSSSDS-YQSKALKLEILSSIVTESSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPK-MANTCVEGLLALIRQ 361 (895)
Q Consensus 284 Ffi~~sDp-~~IK~lKLeIL~~Lane~Nv~~IL~EL~~Yv~~~D~ef~~~aI~AIG~~A~~~p~-~a~~cl~~Ll~LLs~ 361 (895)
-. -+-| .|+|.--|-++-.|+..+.- .++ .|+.+. +++--..+.+- .+..+.+ +|.-+++ ++|..
T Consensus 103 t~--k~r~~E~LRLtsLGVIgaLvK~d~~-evi----~fLl~t--EiiplcLr~me-~GselSKtvAtfIlq---KIL~d 169 (262)
T PF04078_consen 103 TS--KTRPFEYLRLTSLGVIGALVKTDDP-EVI----SFLLQT--EIIPLCLRIME-FGSELSKTVATFILQ---KILLD 169 (262)
T ss_dssp -----SHHHHHHHHHHHHHHHHHHTT--H-HHH----HHHHCT--THHHHHHHHHH-HS-HHHHHHHHHHHH---HHHHS
T ss_pred cc--cccccchhhHhHHHHHHHHHcCCcH-HHH----HHHHhh--chHHHHHHHHH-hccHHHHHHHHHHHH---HHHcc
Confidence 21 1223 69999999999999964443 344 455433 45555555442 2222222 2222222 23321
Q ss_pred hhccccccCCCCCCchhhhHHHHHHHHH---hhCCcchHHHHHHHHHhhhccC-chhhHHhhh
Q 002667 362 ELLTSDIESGNGEADVLIQSIISIKSII---KQDPSCHEKVIIQLFRSLDSIK-VPEARVMII 420 (895)
Q Consensus 362 ~~~~~~~~~~~~~~~vv~E~V~vik~Ll---q~~P~~~~~ii~~L~~~ld~i~-~p~ArAsIi 420 (895)
+ .|..|+-....-......++..++ .++|. ...++++++++..+. +|.||.++-
T Consensus 170 d---~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS--~RLLKhIIrCYlRLsdnprar~aL~ 227 (262)
T PF04078_consen 170 D---VGLNYICQTAERFFAVAMVLNKMVEQLVKQPS--PRLLKHIIRCYLRLSDNPRAREALR 227 (262)
T ss_dssp H---HHHHHHTSSHHHHHHHHHHHHHHHHHHHHS----HHHHHHHHHHHHHHTTSTTHHHHHH
T ss_pred h---hHHHHHhcCHHHHHHHHHHHHHHHHHHccCCC--hhHHHHHHHHHHHHccCHHHHHHHH
Confidence 1 011111110001111223455554 24553 367888888776664 588888754
No 121
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=63.61 E-value=22 Score=45.93 Aligned_cols=110 Identities=19% Similarity=0.220 Sum_probs=80.4
Q ss_pred ccchhhhHHHHHHHHhhcCCCCchhhHHHHHHHHHHhccCCcchhHHHHHHHHHHhcCCChhHHHHHHHHHHHhCCCC--
Q 002667 4 IRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNN-- 81 (895)
Q Consensus 4 IRv~~I~piv~~aIkk~l~D~SPYVRK~AA~AI~Kly~ld~pd~~~~L~eil~~LL~D~~p~VvgsAv~Af~EIcP~r-- 81 (895)
+|-|.+++.-...+-+-+.|.+|-|||+|.+-+..|.--+.-..++++-+. ..+|.|.++.+..=|=.-|.|+--..
T Consensus 990 v~fpnlie~~T~~Ly~rL~D~~~~vRkta~lvlshLILndmiKVKGql~eM-A~cl~D~~~~IsdlAk~FF~Els~k~n~ 1068 (1251)
T KOG0414|consen 990 VRFPNLIEPWTEHLYRRLRDESPSVRKTALLVLSHLILNDMIKVKGQLSEM-ALCLEDPNAEISDLAKSFFKELSSKGNT 1068 (1251)
T ss_pred hhcccccchhhHHHHHHhcCccHHHHHHHHHHHHHHHHhhhhHhcccHHHH-HHHhcCCcHHHHHHHHHHHHHhhhcccc
Confidence 577888999999999999999999999999999987655422256666655 56889999988766666678886432
Q ss_pred -ccchHHHHHHHHHhCCCCChhhHHHHHHHHHhhhh
Q 002667 82 -FTLIGRNYRNLCQILPDVEEWGQILLIEILLRYVV 116 (895)
Q Consensus 82 -~dLihk~yrkLc~~L~d~dEWgQv~iL~lL~rY~r 116 (895)
+.|+....-+|=+. .++|=.=..+|+.|.-|-.
T Consensus 1069 iynlLPdil~~Ls~~--~l~~~~~~~vm~~li~~ik 1102 (1251)
T KOG0414|consen 1069 IYNLLPDILSRLSNG--NLEEESYKTVMEFLIGLIK 1102 (1251)
T ss_pred hhhhchHHHHhhccC--cccchhhHHHHHHHHHHhc
Confidence 34454455555554 4666666778888888763
No 122
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=63.10 E-value=81 Score=31.58 Aligned_cols=72 Identities=15% Similarity=0.122 Sum_probs=51.2
Q ss_pred HHHHhhhhhccCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH-HhcCCCcchHHHHHHHHHHHHhCCccccccc
Q 002667 208 LLLQCTSPLLWSHNSAVVLAAAGVHWIMSPKEDVKRIVKPLLF-ILRSSGASKYVVLCNIQVFAKALPHLFVPHY 281 (895)
Q Consensus 208 lLL~~~~pLLqS~NsAVVlaaa~l~~~lap~~~l~~~~~pLv~-LL~s~~eiqyvvL~~I~~i~~~~p~lF~~~l 281 (895)
++-+++.+.+..-|-+++|+++-.+=. . ...-+.++++|.+ |-..++++++.+|..+..++..+...|...+
T Consensus 4 ~iekATse~l~~~dw~~il~icD~I~~-~-~~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~ev 76 (144)
T cd03568 4 LVEKATDEKLTSENWGLILDVCDKVKS-D-ENGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEV 76 (144)
T ss_pred HHHHHcCccCCCcCHHHHHHHHHHHhc-C-CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHH
Confidence 455667777777888888887765422 1 2234556666664 4445799999999999999999998877654
No 123
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=62.97 E-value=27 Score=42.00 Aligned_cols=97 Identities=11% Similarity=0.059 Sum_probs=53.4
Q ss_pred hhhhHHHHHHHHHhhCCcchHHHHHHHHHhhhccCchhhHHhhhhhhccccCCCCCccchHHHHHHHHHHhhccCcHHHH
Q 002667 377 VLIQSIISIKSIIKQDPSCHEKVIIQLFRSLDSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETK 456 (895)
Q Consensus 377 vv~E~V~vik~Llq~~P~~~~~ii~~L~~~ld~i~~p~ArAsIiWLLGEY~~~~e~ip~ia~dvLr~l~k~F~~E~~~VK 456 (895)
|-.-+|+.|--+.-.+|+.. ...++.|.+-..+..|++.+..+|=.|.- .-...+-|+|..+++ +-...||
T Consensus 568 VrRAAViAlGfvc~~D~~~l----v~tvelLs~shN~hVR~g~AvaLGiacag--~G~~~a~diL~~L~~---D~~dfVR 638 (926)
T COG5116 568 VRRAAVIALGFVCCDDRDLL----VGTVELLSESHNFHVRAGVAVALGIACAG--TGDKVATDILEALMY---DTNDFVR 638 (926)
T ss_pred HHHHHHHheeeeEecCcchh----hHHHHHhhhccchhhhhhhHHHhhhhhcC--CccHHHHHHHHHHhh---CcHHHHH
Confidence 43444444433334445432 23333344444578899999999988752 123457788887764 3345677
Q ss_pred HHHHHHHHHHhhhcCCCChHHHHHHH
Q 002667 457 LQILNTTIKVLLCAKGGDMWTITRLF 482 (895)
Q Consensus 457 lqILtaaaKL~~~~p~e~~~~l~~L~ 482 (895)
...+-+.+-+.+++.++..+.+..+.
T Consensus 639 Q~AmIa~~mIl~Q~n~~Lnp~v~~I~ 664 (926)
T COG5116 639 QSAMIAVGMILMQCNPELNPNVKRII 664 (926)
T ss_pred HHHHHHHHHHHhhcCcccChhHHHHH
Confidence 77666666555554333323333333
No 124
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=62.92 E-value=6.3 Score=49.85 Aligned_cols=6 Identities=67% Similarity=0.894 Sum_probs=3.2
Q ss_pred HHHHhh
Q 002667 532 VLVECI 537 (895)
Q Consensus 532 ~la~~l 537 (895)
.+.++|
T Consensus 589 vlveiL 594 (784)
T PF04931_consen 589 VLVEIL 594 (784)
T ss_pred HHHHHH
Confidence 455554
No 125
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=62.69 E-value=1.1e+02 Score=33.79 Aligned_cols=67 Identities=15% Similarity=0.323 Sum_probs=49.9
Q ss_pred HHHHHhhccCChhHHHHHHHHHHHHHhhCcc--hHHHHHHHHHHHHHhhhccccccCCCCCCchhhhHHHHHHHHHhh
Q 002667 316 KEFQDYIRDPDRRFAADTVAAIGLCARKLPK--MANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQ 391 (895)
Q Consensus 316 ~EL~~Yv~~~D~ef~~~aI~AIG~~A~~~p~--~a~~cl~~Ll~LLs~~~~~~~~~~~~~~~~vv~E~V~vik~Llq~ 391 (895)
+.|..|+++.|...+.+++..++.+..++|. ....-++.|+.+..... .|...+..++..+..|+++
T Consensus 2 ~~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl---------~D~~~~~~~l~gl~~L~~~ 70 (262)
T PF14500_consen 2 QSLGEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRL---------DDHACVQPALKGLLALVKM 70 (262)
T ss_pred cchhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHh---------ccHhhHHHHHHHHHHHHhC
Confidence 5688999999999999999999999999985 34455677777665321 2334577777788888854
No 126
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=62.41 E-value=33 Score=39.10 Aligned_cols=95 Identities=19% Similarity=0.168 Sum_probs=71.8
Q ss_pred hcCCCCchhhHHHHHHHHHHhccCCcchhHHHHH------HHHHHhcCCChhHHHHHHHHHHHhCCCC------ccchHH
Q 002667 20 CARDPSVFVRKCAANALPKLHELRQEEITSAIEE------IVGILLNDRSPGVVGAAAAAFASICPNN------FTLIGR 87 (895)
Q Consensus 20 ~l~D~SPYVRK~AA~AI~Kly~ld~pd~~~~L~e------il~~LL~D~~p~VvgsAv~Af~EIcP~r------~dLihk 87 (895)
.+.+.++-||+.||.-|..+.+-. |...+.+++ ++..|-.|.+-.|...|+.|+.....+. +-.++.
T Consensus 132 ~l~~~~~~lR~~Aa~Vigt~~qNN-P~~Qe~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G 210 (342)
T KOG2160|consen 132 YLENSDAELRELAARVIGTAVQNN-PKSQEQVIELGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNG 210 (342)
T ss_pred HhcCCcHHHHHHHHHHHHHHHhcC-HHHHHHHHHcccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCC
Confidence 899999999999999999999998 875555544 4444445666677789999988775432 222333
Q ss_pred HHHHHHHhCCC--CChhhHHHHHHHHHhhhh
Q 002667 88 NYRNLCQILPD--VEEWGQILLIEILLRYVV 116 (895)
Q Consensus 88 ~yrkLc~~L~d--~dEWgQv~iL~lL~rY~r 116 (895)
|.-|.+.|.. .+-=.|++++.++..+..
T Consensus 211 -~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~ 240 (342)
T KOG2160|consen 211 -YQVLRDVLQSNNTSVKLKRKALFLLSLLLQ 240 (342)
T ss_pred -HHHHHHHHHcCCcchHHHHHHHHHHHHHHH
Confidence 7788888877 788889999999988864
No 127
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=62.07 E-value=3.8e+02 Score=34.49 Aligned_cols=61 Identities=13% Similarity=0.142 Sum_probs=54.4
Q ss_pred HhhcCCCCchhhHHHHHHHHHHhccCCcchhHHHHHHHHHHhcCCChhHHHHHHHHHHHhC
Q 002667 18 GKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASIC 78 (895)
Q Consensus 18 kk~l~D~SPYVRK~AA~AI~Kly~ld~pd~~~~L~eil~~LL~D~~p~VvgsAv~Af~EIc 78 (895)
-+++.|.+--+|+.+|+||.-+-..|-|++-++++..|.++|.+.+..-+-+|+.++.|+.
T Consensus 96 l~~l~~sn~ki~~~vay~is~Ia~~D~Pd~WpElv~~i~~~l~~~n~n~i~~am~vL~el~ 156 (1005)
T KOG2274|consen 96 LNLLDDSNSKIRSAVAYAISSIAAVDYPDEWPELVPFILKLLSSGNENSIHGAMRVLAELS 156 (1005)
T ss_pred HhhhhccccccchHHHHHHHHHHhccCchhhHHHHHHHHHHHhccchhhhhhHHHHHHHHH
Confidence 3455599999999999999999999889999999999999999999988889999887764
No 128
>PF05536 Neurochondrin: Neurochondrin
Probab=62.01 E-value=2.5e+02 Score=34.20 Aligned_cols=178 Identities=17% Similarity=0.199 Sum_probs=93.8
Q ss_pred CcHHHHHHHHHHHHhhcCCCCH---HHHHHH---HHHhhccCChhHHHHHHHHHHHHHhhCcchHHHHHHHHHHHHHhhh
Q 002667 290 DSYQSKALKLEILSSIVTESSI---SSVFKE---FQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQEL 363 (895)
Q Consensus 290 Dp~~IK~lKLeIL~~Lane~Nv---~~IL~E---L~~Yv~~~D~ef~~~aI~AIG~~A~~~p~~a~~cl~~Ll~LLs~~~ 363 (895)
++..-+.+.+.||..++++.++ ..++.- |.+-+...+. ..+.+.|+..|..+.+.+
T Consensus 69 ~~~~~~~LavsvL~~f~~~~~~a~~~~~~~~IP~Lle~l~~~s~-----------------~~~v~dalqcL~~Ias~~- 130 (543)
T PF05536_consen 69 PPEEYLSLAVSVLAAFCRDPELASSPQMVSRIPLLLEILSSSSD-----------------LETVDDALQCLLAIASSP- 130 (543)
T ss_pred CHHHHHHHHHHHHHHHcCChhhhcCHHHHHHHHHHHHHHHcCCc-----------------hhHHHHHHHHHHHHHcCc-
Confidence 5678899999999999987665 233332 2222222222 133344444444443321
Q ss_pred ccccccCCCCCCchh-hhHHHHHHHHHhhCCcchHHHHHHHHHhhhccCchhhHHhhhhhhccccCCCCCccchHHHHHH
Q 002667 364 LTSDIESGNGEADVL-IQSIISIKSIIKQDPSCHEKVIIQLFRSLDSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLK 442 (895)
Q Consensus 364 ~~~~~~~~~~~~~vv-~E~V~vik~Llq~~P~~~~~ii~~L~~~ld~i~~p~ArAsIiWLLGEY~~~~e~ip~ia~dvLr 442 (895)
.|....+ ..+|..|..++.+++..++..+.-|...+..... -.|- ++. ....-++.
T Consensus 131 --------~G~~aLl~~g~v~~L~ei~~~~~~~~E~Al~lL~~Lls~~~~------~~~~--~~~-------~~l~~il~ 187 (543)
T PF05536_consen 131 --------EGAKALLESGAVPALCEIIPNQSFQMEIALNLLLNLLSRLGQ------KSWA--EDS-------QLLHSILP 187 (543)
T ss_pred --------HhHHHHHhcCCHHHHHHHHHhCcchHHHHHHHHHHHHHhcch------hhhh--hhH-------HHHHHHHH
Confidence 1111111 1245566777777665555444444433332110 0122 222 12345677
Q ss_pred HHHHhhccCcHHHHHHHHHHHHHHhhhcCCC------ChHHHHHHHHHHHHHHccCCChHHHhHHHHHHHHc
Q 002667 443 YLAWCFKSEAVETKLQILNTTIKVLLCAKGG------DMWTITRLFSYLLELAECDLNYDVRDRARFFKKLF 508 (895)
Q Consensus 443 ~l~k~F~~E~~~VKlqILtaaaKL~~~~p~e------~~~~l~~L~qyvL~la~~D~n~DVRDRAr~y~~LL 508 (895)
.+++.|..-....|.+++.....++-+.|.. ...-...+..++-.+-+.-..+.-|+=|-...+.+
T Consensus 188 ~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~sr~~~~~R~~al~Laa~L 259 (543)
T PF05536_consen 188 SLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQSRLTPSQRDPALNLAASL 259 (543)
T ss_pred HHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 8888998888899999999999998877421 11112333333333333445666666665554444
No 129
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=59.56 E-value=2.7e+02 Score=30.52 Aligned_cols=151 Identities=17% Similarity=0.118 Sum_probs=87.1
Q ss_pred HHHHHHhhhhhccCCChHHHHHHHHHHHhcCC-----H----HH---HHHHHHHH---HHHhcCC---CcchHHHHHHHH
Q 002667 206 VKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSP-----K----ED---VKRIVKPL---LFILRSS---GASKYVVLCNIQ 267 (895)
Q Consensus 206 ~~lLL~~~~pLLqS~NsAVVlaaa~l~~~lap-----~----~~---l~~~~~pL---v~LL~s~---~eiqyvvL~~I~ 267 (895)
...++..++.++....|-.+...++++|.++- . .. ++++...+ ......+ .+.|+.+|+.+.
T Consensus 12 A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La 91 (278)
T PF08631_consen 12 AEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLA 91 (278)
T ss_pred HHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHH
Confidence 36678888888888888888888888887642 1 11 23332222 2222222 367888888776
Q ss_pred HHHHh--CCccccc---ccccceeccCCcHHHHHHHHHHHHhhcCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHHHh
Q 002667 268 VFAKA--LPHLFVP---HYEDFFVSSSDSYQSKALKLEILSSIVTESSISSVFKEFQDYIRDPDRRFAADTVAAIGLCAR 342 (895)
Q Consensus 268 ~i~~~--~p~lF~~---~l~~Ffi~~sDp~~IK~lKLeIL~~Lane~Nv~~IL~EL~~Yv~~~D~ef~~~aI~AIG~~A~ 342 (895)
..... .+.-+.. .++..---+.++..+..+||++|....+..-+..+|..+..-+.-++ .-...++..|..++.
T Consensus 92 ~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e-~~~~~~l~~i~~l~~ 170 (278)
T PF08631_consen 92 NAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSE-SNFDSILHHIKQLAE 170 (278)
T ss_pred HHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhccccc-chHHHHHHHHHHHHh
Confidence 65432 1222211 11111112355667999999999994444445555554444332222 233445677777788
Q ss_pred hCcchHHHHHHHHHH
Q 002667 343 KLPKMANTCVEGLLA 357 (895)
Q Consensus 343 ~~p~~a~~cl~~Ll~ 357 (895)
+-+..+-.|++.++.
T Consensus 171 ~~~~~a~~~ld~~l~ 185 (278)
T PF08631_consen 171 KSPELAAFCLDYLLL 185 (278)
T ss_pred hCcHHHHHHHHHHHH
Confidence 888877777766554
No 130
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=58.69 E-value=66 Score=43.55 Aligned_cols=126 Identities=17% Similarity=0.174 Sum_probs=81.6
Q ss_pred HHHHHhhhhhccCCChHHHHHHHHHHHhcC--CHH-HHHHHHHHHHHHhcC--CCcchHHHHHHHHHHHHhCCcccccc-
Q 002667 207 KLLLQCTSPLLWSHNSAVVLAAAGVHWIMS--PKE-DVKRIVKPLLFILRS--SGASKYVVLCNIQVFAKALPHLFVPH- 280 (895)
Q Consensus 207 ~lLL~~~~pLLqS~NsAVVlaaa~l~~~la--p~~-~l~~~~~pLv~LL~s--~~eiqyvvL~~I~~i~~~~p~lF~~~- 280 (895)
.-||..+.-||+|.++.|+--++.+|.++- -.. ..+.+++.|+.++.+ +.|+- .+|+.+..|+..+|+...+|
T Consensus 434 ~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~fds~~qqeVv~~Lvthi~sg~~~ev~-~aL~vL~~L~~~~~~~l~~fa 512 (1426)
T PF14631_consen 434 PSILSLAQSLLRSKEPSVREFGSHLYKYLFKEFDSYCQQEVVGALVTHIGSGNSQEVD-AALDVLCELAEKNPSELQPFA 512 (1426)
T ss_dssp HHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS-HHHHHHHHHHHHHHHHH--HHHHH-HHHHHHHHHHHH-HHHHHHTH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHcCCcHHHHH-HHHHHHHHHHhccHHHHHHHH
Confidence 567778889999999998877777765542 122 245688999988754 45665 78999999999998765554
Q ss_pred --cccceeccC--CcHHHHHHHHHHHHhhcCC--CCHHHHHHH----HHHhhccCChhHHHHHH
Q 002667 281 --YEDFFVSSS--DSYQSKALKLEILSSIVTE--SSISSVFKE----FQDYIRDPDRRFAADTV 334 (895)
Q Consensus 281 --l~~Ffi~~s--Dp~~IK~lKLeIL~~Lane--~Nv~~IL~E----L~~Yv~~~D~ef~~~aI 334 (895)
++...-+.+ .+.+||++ .+||+.|+-. .+...|-+| ++.++.+.+..+++.-|
T Consensus 513 ~~l~giLD~l~~Ls~~qiR~l-f~il~~La~~~~~~~s~i~del~ivIRKQLss~~~~~K~~GI 575 (1426)
T PF14631_consen 513 TFLKGILDYLDNLSLQQIRKL-FDILCTLAFSDSSSSSSIQDELHIVIRKQLSSSNPKYKRIGI 575 (1426)
T ss_dssp HHHHGGGGGGGG--HHHHHHH-HHHHHHHHHHHSS---HHHHHHHHHHHHHHT-SSHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHH-HHHHHHHhcCCcccchhhHHHHHHHHHHhhcCCcHHHHHHhH
Confidence 433221122 25678888 9999999832 223456666 45566677777766544
No 131
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=57.72 E-value=20 Score=36.69 Aligned_cols=63 Identities=22% Similarity=0.149 Sum_probs=51.9
Q ss_pred HHHHhhcCCCCchhhHHHHHHHHHHhccCCcchhHHHHHHHHHHhcCCChhHHHHHHHHHHHhCC
Q 002667 15 VAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICP 79 (895)
Q Consensus 15 ~aIkk~l~D~SPYVRK~AA~AI~Kly~ld~pd~~~~L~eil~~LL~D~~p~VvgsAv~Af~EIcP 79 (895)
..+.+-+.+.++|+||+|..+..+.+.-. ...+.+.+++..++.|.+..|-=+..-+|.+++-
T Consensus 108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~~--~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~ 170 (197)
T cd06561 108 DLLEEWAKSENEWVRRAAIVLLLRLIKKE--TDFDLLLEIIERLLHDEEYFVQKAVGWALREYGK 170 (197)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHhc--ccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHh
Confidence 46788899999999999999999887752 2467788899999999999888877778887763
No 132
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=57.54 E-value=29 Score=37.95 Aligned_cols=75 Identities=20% Similarity=0.260 Sum_probs=56.0
Q ss_pred HHHHhhcCCC--CchhhHHHHHHHHHHhccCCcchhHHHHHHHHHHhc----CCChhHHHHHHHHHHHhCCCCc-cchHH
Q 002667 15 VAVGKCARDP--SVFVRKCAANALPKLHELRQEEITSAIEEIVGILLN----DRSPGVVGAAAAAFASICPNNF-TLIGR 87 (895)
Q Consensus 15 ~aIkk~l~D~--SPYVRK~AA~AI~Kly~ld~pd~~~~L~eil~~LL~----D~~p~VvgsAv~Af~EIcP~r~-dLihk 87 (895)
..|++.+.|+ ..|||-.|.-|+..+.... |..++.+++.+..++. .+...|.|+=+....+++|..+ ..|.+
T Consensus 114 ~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~-~~~Re~vi~~f~~ll~~~l~~~~~~~~~~Lv~~~~dL~~~EL~~~I~~ 192 (249)
T PF06685_consen 114 EPLKELIEDPDADEYVRMAAISALAFLVHEG-PISREEVIQYFRELLNYFLERNPSFLWGSLVADICDLYPEELLPEIRK 192 (249)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHhcCHHHhHHHHHH
Confidence 4566677666 4789999999999999988 8888888887777663 3334567887888889999763 44655
Q ss_pred HHH
Q 002667 88 NYR 90 (895)
Q Consensus 88 ~yr 90 (895)
.|.
T Consensus 193 ~f~ 195 (249)
T PF06685_consen 193 AFE 195 (249)
T ss_pred HHH
Confidence 555
No 133
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.34 E-value=5.7e+02 Score=34.90 Aligned_cols=148 Identities=15% Similarity=0.184 Sum_probs=87.7
Q ss_pred CCChhHHHHHHhhhhhccCCChHHHHHHHHHHHhcC---CHHHHHHHHHHHHHH-hcCCCcchHHHHHHHHHHHHhCCcc
Q 002667 201 KTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMS---PKEDVKRIVKPLLFI-LRSSGASKYVVLCNIQVFAKALPHL 276 (895)
Q Consensus 201 ~~d~D~~lLL~~~~pLLqS~NsAVVlaaa~l~~~la---p~~~l~~~~~pLv~L-L~s~~eiqyvvL~~I~~i~~~~p~l 276 (895)
++-|-...||+.+.|-+..||++|--+.+.+.-|++ .++..++++.-++.. +...+..+-++...+..|+...+++
T Consensus 1270 emtP~sgKll~al~~g~~dRNesv~kafAsAmG~L~k~Ss~dq~qKLie~~l~~~l~k~es~~siscatis~Ian~s~e~ 1349 (1702)
T KOG0915|consen 1270 EMTPYSGKLLRALFPGAKDRNESVRKAFASAMGYLAKFSSPDQMQKLIETLLADLLGKDESLKSISCATISNIANYSQEM 1349 (1702)
T ss_pred ccCcchhHHHHHHhhccccccHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhccCCCccchhHHHHHHHHHhhHHH
Confidence 455667889999999999999999988888876664 345666666666544 4433323344555444466666777
Q ss_pred ccccccc-----ceeccCCcHHHHHHHHHHHHhhcCC--CCHH----HHHHHHHHhhccCC-hhHHHHHHHHHHHHHhhC
Q 002667 277 FVPHYED-----FFVSSSDSYQSKALKLEILSSIVTE--SSIS----SVFKEFQDYIRDPD-RRFAADTVAAIGLCARKL 344 (895)
Q Consensus 277 F~~~l~~-----Ffi~~sDp~~IK~lKLeIL~~Lane--~Nv~----~IL~EL~~Yv~~~D-~ef~~~aI~AIG~~A~~~ 344 (895)
|..|... |+.+..+......+==|+...++.- ..+. .||.-+-.-+.+.+ -.++..++++|..+|...
T Consensus 1350 Lkn~asaILPLiFLa~~ee~Ka~q~Lw~dvW~e~vsggagtvrl~~~eiLn~iceni~nn~~w~lr~q~Akai~~~a~~~ 1429 (1702)
T KOG0915|consen 1350 LKNYASAILPLIFLAMHEEEKANQELWNDVWAELVSGGAGTVRLYLLEILNLICENITNNESWKLRKQAAKAIRVIAEGL 1429 (1702)
T ss_pred HHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCCCcchhhhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHcccc
Confidence 6666432 3334333333444444555555432 2332 23333333333333 246667788888888776
Q ss_pred cchH
Q 002667 345 PKMA 348 (895)
Q Consensus 345 p~~a 348 (895)
...+
T Consensus 1430 sss~ 1433 (1702)
T KOG0915|consen 1430 SSSA 1433 (1702)
T ss_pred cccC
Confidence 5443
No 134
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=56.74 E-value=3.3e+02 Score=30.65 Aligned_cols=90 Identities=17% Similarity=0.088 Sum_probs=56.4
Q ss_pred HHHHHhhcCCCCchhhHHHHHHHHHHhccC-Ccc----hhHHHHHHHHHHhcCCC--hhHHHHHHHHHHHhC----CCCc
Q 002667 14 LVAVGKCARDPSVFVRKCAANALPKLHELR-QEE----ITSAIEEIVGILLNDRS--PGVVGAAAAAFASIC----PNNF 82 (895)
Q Consensus 14 ~~aIkk~l~D~SPYVRK~AA~AI~Kly~ld-~pd----~~~~L~eil~~LL~D~~--p~VvgsAv~Af~EIc----P~r~ 82 (895)
+...-.++.|++.-.|-.|..+|.+++.-. .++ ....|.+.+.+.++-.. -.++++.+.++.-|. .+.-
T Consensus 45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ 124 (309)
T PF05004_consen 45 LKEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSE 124 (309)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHH
Confidence 444556678999999999999999988542 144 45567777777775433 344444444444443 2333
Q ss_pred cchHHHHHHHHHhCCCCChhh
Q 002667 83 TLIGRNYRNLCQILPDVEEWG 103 (895)
Q Consensus 83 dLihk~yrkLc~~L~d~dEWg 103 (895)
+++......|.+.+.|-..=.
T Consensus 125 ei~~~~~~~L~~~l~d~s~~~ 145 (309)
T PF05004_consen 125 EIFEELKPVLKRILTDSSASP 145 (309)
T ss_pred HHHHHHHHHHHHHHhCCccch
Confidence 455555667777777765433
No 135
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=55.96 E-value=1.4e+02 Score=32.69 Aligned_cols=80 Identities=16% Similarity=0.247 Sum_probs=53.4
Q ss_pred HHHHHHhhccCChh-H-HHHHHHHHHHHHhhCcchHHHHHHHHHHHHHhhhccccccCCCCCCchhhhHHHHHHHHHhhC
Q 002667 315 FKEFQDYIRDPDRR-F-AADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQD 392 (895)
Q Consensus 315 L~EL~~Yv~~~D~e-f-~~~aI~AIG~~A~~~p~~a~~cl~~Ll~LLs~~~~~~~~~~~~~~~~vv~E~V~vik~Llq~~ 392 (895)
+..|+.|+.+.+.+ + +..++.|++.++..-|.-.+.|++++..++... ++++...+|-.++ ..++..+
T Consensus 113 ~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~~Re~vi~~f~~ll~~~--------l~~~~~~~~~~Lv--~~~~dL~ 182 (249)
T PF06685_consen 113 IEPLKELIEDPDADEYVRMAAISALAFLVHEGPISREEVIQYFRELLNYF--------LERNPSFLWGSLV--ADICDLY 182 (249)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH--------hccCchHHHHHHH--HHHHhcC
Confidence 34455677766553 4 457889999999999999999999999999742 1334445665543 4556667
Q ss_pred CcchHHHHHHHH
Q 002667 393 PSCHEKVIIQLF 404 (895)
Q Consensus 393 P~~~~~ii~~L~ 404 (895)
|..-...|+++.
T Consensus 183 ~~EL~~~I~~~f 194 (249)
T PF06685_consen 183 PEELLPEIRKAF 194 (249)
T ss_pred HHHhHHHHHHHH
Confidence 765444444444
No 136
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=54.96 E-value=20 Score=34.81 Aligned_cols=74 Identities=15% Similarity=0.229 Sum_probs=50.3
Q ss_pred CcchHHHHHHHHHhhhccCchhhHHhhhhhhccccCCCCCccchHHHHHH------HHHHhhccCcHHHHHHHHHHHHHH
Q 002667 393 PSCHEKVIIQLFRSLDSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLK------YLAWCFKSEAVETKLQILNTTIKV 466 (895)
Q Consensus 393 P~~~~~ii~~L~~~ld~i~~p~ArAsIiWLLGEY~~~~e~ip~ia~dvLr------~l~k~F~~E~~~VKlqILtaaaKL 466 (895)
.+..-++++.|++.|+.-.+|...|..+.=||||+.. .|.. -.++. .+..-...++++||.+.|.+.-|+
T Consensus 38 ~~~~~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~---~p~g-r~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQkl 113 (119)
T PF11698_consen 38 EENNFELLKKLIKLLDKSDDPTTLAVACHDIGEFVRH---YPNG-RNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKL 113 (119)
T ss_dssp SSGGGHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH----GGG-HHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHH
T ss_pred HHcccHHHHHHHHHHccCCCcceeehhhcchHHHHHH---ChhH-HHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 3444578889999997777888888888999999864 3432 22221 122234568899999999999998
Q ss_pred hhhc
Q 002667 467 LLCA 470 (895)
Q Consensus 467 ~~~~ 470 (895)
.+.+
T Consensus 114 m~~~ 117 (119)
T PF11698_consen 114 MVNN 117 (119)
T ss_dssp HHHS
T ss_pred HHhc
Confidence 7653
No 137
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.81 E-value=4.6e+02 Score=31.64 Aligned_cols=106 Identities=18% Similarity=0.177 Sum_probs=74.2
Q ss_pred hhHHHHHHHHhhcCCCCchhhHHHHHHHHHHhccCCcc----hh-HHHHHHHHHHhcCCChhHHHHHHHHHHHhCCC--C
Q 002667 9 ISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEE----IT-SAIEEIVGILLNDRSPGVVGAAAAAFASICPN--N 81 (895)
Q Consensus 9 I~piv~~aIkk~l~D~SPYVRK~AA~AI~Kly~ld~pd----~~-~~L~eil~~LL~D~~p~VvgsAv~Af~EIcP~--r 81 (895)
...-++..+-.-++|++.-+|.-|+-++...+... |+ ++ ..++-+|..|..|.+..|+--|+.++.-+.+. .
T Consensus 255 lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~-P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~ 333 (533)
T KOG2032|consen 255 LLGSVLLSLANKATDPSAKSRGMACRGLGNTASGA-PDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASN 333 (533)
T ss_pred cHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccC-cHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhh
Confidence 44456777788899999999999999999999997 87 33 34677888888888899999999999888763 2
Q ss_pred ccc---hHHHHHHHHHhCCCCChh---hHHHHHHHHHhhh
Q 002667 82 FTL---IGRNYRNLCQILPDVEEW---GQILLIEILLRYV 115 (895)
Q Consensus 82 ~dL---ihk~yrkLc~~L~d~dEW---gQv~iL~lL~rY~ 115 (895)
+++ +-...-++.+...+.+.= .-.++...|..|+
T Consensus 334 ~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~ 373 (533)
T KOG2032|consen 334 DDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLA 373 (533)
T ss_pred cchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHc
Confidence 332 112333444555443332 2445556666665
No 138
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.60 E-value=5.1e+02 Score=33.28 Aligned_cols=212 Identities=16% Similarity=0.109 Sum_probs=121.4
Q ss_pred cccccceeccCCcHHHHHHHHHHHHhhcCC------C---CHH-HHHHHHHHhhccCChhHHHHHHHHHHHHHhhCcch-
Q 002667 279 PHYEDFFVSSSDSYQSKALKLEILSSIVTE------S---SIS-SVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKM- 347 (895)
Q Consensus 279 ~~l~~Ffi~~sDp~~IK~lKLeIL~~Lane------~---Nv~-~IL~EL~~Yv~~~D~ef~~~aI~AIG~~A~~~p~~- 347 (895)
|+...-|-..+++. -+.+++.|-..++|. + |+. +.+.|-..++.+.-..++..+++-+.+++.+-.+.
T Consensus 684 ~~~eQ~~n~~t~e~-~~Ll~~~I~~~lvn~ptt~rsd~~~s~~~e~~qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~ 762 (982)
T KOG4653|consen 684 PLKEQLFNLGTREI-NPLLQQSIDSLLVNIPTTRRSDRRYSVDIEPLQEAISSLHDDQVPIKGYGLQMLRHLIEKRKKAT 762 (982)
T ss_pred chHHHHhhcccccc-chHHhccchhhhccCCCCccccccccccHHHHHHHHHHhcCCcccchHHHHHHHHHHHHhcchhh
Confidence 34443444444432 223335555556652 1 222 35778888888888889999999999999844322
Q ss_pred ---HHHHHHHHHHHHHhhhccccccCCCCCCchhhhHHHHHHHHHhhCCcchHHHHHHHHHhhhcc----------Cchh
Q 002667 348 ---ANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQDPSCHEKVIIQLFRSLDSI----------KVPE 414 (895)
Q Consensus 348 ---a~~cl~~Ll~LLs~~~~~~~~~~~~~~~~vv~E~V~vik~Llq~~P~~~~~ii~~L~~~ld~i----------~~p~ 414 (895)
-..++...++.|.. .|.+|---+|..+-.|-..||+ .++..|.+...+- .+.+
T Consensus 763 ~~~~ekvl~i~ld~Lkd-----------edsyvyLnaI~gv~~Lcevy~e---~il~dL~e~Y~s~k~k~~~d~~lkVGE 828 (982)
T KOG4653|consen 763 LIQGEKVLAIALDTLKD-----------EDSYVYLNAIRGVVSLCEVYPE---DILPDLSEEYLSEKKKLQTDYRLKVGE 828 (982)
T ss_pred hhhHHHHHHHHHHHhcc-----------cCceeeHHHHHHHHHHHHhcch---hhHHHHHHHHHhcccCCCccceehHHH
Confidence 23678888888873 2333322233322234445886 5677777755432 2233
Q ss_pred hHHhhhhhhccccCCCCCccchHHHHHHHHHHhhccCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHccCCC
Q 002667 415 ARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTITRLFSYLLELAECDLN 494 (895)
Q Consensus 415 ArAsIiWLLGEY~~~~e~ip~ia~dvLr~l~k~F~~E~~~VKlqILtaaaKL~~~~p~e~~~~l~~L~qyvL~la~~D~n 494 (895)
|.-.++-=.||-+. -+ -.-++..+....-+-..+-|+.-+..+.-+........++.+..+++-++.+++-|..
T Consensus 829 ai~k~~qa~Gel~~-----~y-~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~~ev~~~Il~l~~~d~s 902 (982)
T KOG4653|consen 829 AILKVAQALGELVF-----KY-KAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFFHEVLQLILSLETTDGS 902 (982)
T ss_pred HHHHHHHHhccHHH-----HH-HHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHccCCc
Confidence 33333344444321 11 1122222332223223456777777777776655433344678889999999999999
Q ss_pred hHHHhHHHHHHHHccCC
Q 002667 495 YDVRDRARFFKKLFSHN 511 (895)
Q Consensus 495 ~DVRDRAr~y~~LL~~~ 511 (895)
+=+|--|.-..+.+-.+
T Consensus 903 ~~vRRaAv~li~~lL~~ 919 (982)
T KOG4653|consen 903 VLVRRAAVHLLAELLNG 919 (982)
T ss_pred hhhHHHHHHHHHHHHhc
Confidence 99998887666665443
No 139
>KOG1932 consensus TATA binding protein associated factor [Transcription]
Probab=54.29 E-value=2.5e+02 Score=36.86 Aligned_cols=252 Identities=16% Similarity=0.141 Sum_probs=128.1
Q ss_pred CChhHHHHHHhhh--------hhc-cCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC---CcchHHHHHHHHHH
Q 002667 202 TNDDVKLLLQCTS--------PLL-WSHNSAVVLAAAGVHWIMSPKEDVKRIVKPLLFILRSS---GASKYVVLCNIQVF 269 (895)
Q Consensus 202 ~d~D~~lLL~~~~--------pLL-qS~NsAVVlaaa~l~~~lap~~~l~~~~~pLv~LL~s~---~eiqyvvL~~I~~i 269 (895)
+|||..+|-+... ..| |-++----|+|++.+-.+ |.. ....+|.+.|.+. --||+-+...+.+.
T Consensus 628 iDpd~e~i~~i~i~QPd~Mw~~QLr~drDVvAQ~EAI~~le~~-p~~---~s~~~L~rtl~der~FyrIR~~Aa~aLak~ 703 (1180)
T KOG1932|consen 628 IDPDMEWIREIHIEQPDFMWVYQLRQDRDVVAQMEAIESLEAL-PST---ASRSALTRTLEDERYFYRIRIAAAFALAKT 703 (1180)
T ss_pred eCcchhhhhhhhccCchHHHHHHHHhcccHHHHHHHHHHHHcC-Ccc---hhHHHHHHHHhhcchhhHHHHHHHHHHHHh
Confidence 4777766655433 223 344433344444443222 111 1125666666443 46888888888877
Q ss_pred HHhCCcccc-cccc----cceeccCCcHHHHHHHHHHHHhhcCCCCHHHHHHHHHHhhccCChhHHHHHH-HHHHHHHhh
Q 002667 270 AKALPHLFV-PHYE----DFFVSSSDSYQSKALKLEILSSIVTESSISSVFKEFQDYIRDPDRRFAADTV-AAIGLCARK 343 (895)
Q Consensus 270 ~~~~p~lF~-~~l~----~Ffi~~sDp~~IK~lKLeIL~~Lane~Nv~~IL~EL~~Yv~~~D~ef~~~aI-~AIG~~A~~ 343 (895)
+...++.-- ||+. .+||..+-+ +.-.+|+.. |+.| |++++| .|++++-.+
T Consensus 704 a~~~~dwtG~~~Li~~F~~~fc~k~st-------------IpKsNnF~~----~q~Y-------fvq~~iP~a~a~lR~~ 759 (1180)
T KOG1932|consen 704 ANGESDWTGPPHLIQFFRKKFCSKDST-------------IPKSNNFSN----FQEY-------FVQCAIPVAFASLRGR 759 (1180)
T ss_pred hcccccccChHHHHHHHHHHhccccCC-------------CCCcCcccc----HHHH-------HHHHhhHHHHHHhccc
Confidence 654332211 2333 333433222 244566655 6777 777766 778777777
Q ss_pred CcchHHHHHHHHHHHHHhhhccccccCCCCCCchhhhHHHHHHHHHh------hC-----Ccc----hHHHHHHHHHhhh
Q 002667 344 LPKMANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIK------QD-----PSC----HEKVIIQLFRSLD 408 (895)
Q Consensus 344 ~p~~a~~cl~~Ll~LLs~~~~~~~~~~~~~~~~vv~E~V~vik~Llq------~~-----P~~----~~~ii~~L~~~ld 408 (895)
-..+...+..+|++||..+- .+...| +|.++++.-|..|-..+- .+ ++. ...++..+.+.|.
T Consensus 760 ~g~cp~~V~~FlLdLlkyND-Ns~N~Y--SD~~y~a~LIesl~~~l~p~~s~~~~~~k~~~~~l~~~~~~~~~ei~r~L~ 836 (1180)
T KOG1932|consen 760 EGKCPKEVKAFLLDLLKYND-NSFNSY--SDDYYRASLIESLVESLFPMVSLEFYAEKHTDRLLSRDVRVLIDEITRLLN 836 (1180)
T ss_pred cCCChHHHHHHHHHHhhccc-CCCCcc--chHHHHHHHHHHHhhhcccccchhhhhhhhcchhhhhHHHHHHHHHHHHHH
Confidence 77888899999999998631 011112 234444443333322221 01 111 1122222223221
Q ss_pred --cc--------CchhhHHhhhhhhccccCCCCCccchHHHHHHHHHHhhccCcH--HHHHHHHHHHHHHhhhcCCCChH
Q 002667 409 --SI--------KVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAV--ETKLQILNTTIKVLLCAKGGDMW 476 (895)
Q Consensus 409 --~i--------~~p~ArAsIiWLLGEY~~~~e~ip~ia~dvLr~l~k~F~~E~~--~VKlqILtaaaKL~~~~p~e~~~ 476 (895)
.+ +.... ..+-.+|..++ +|. .|. ..++|..|.. .+++.++++.+-+--..
T Consensus 837 ~e~l~pS~k~ii~~~~l--~~~~~l~k~~h----l~s-~p~----~~~~~a~~~~~vd~r~~a~~~~v~~~~~~------ 899 (1180)
T KOG1932|consen 837 MEKLMPSFKHIIKVSAL--KAIRELQKSGH----LPS-LPE----LLESYAEEGSFVDVRICAEELNVDLGGVD------ 899 (1180)
T ss_pred HHhhchhhhceEEeeec--hhhhhhhhccc----ccc-Cch----hhhccccccchhhhHHHhhhhhhhhcccC------
Confidence 11 11111 12455555554 232 222 3457777763 56666666665443211
Q ss_pred HHHHHHHHHHHHHccCCChHHHhHH
Q 002667 477 TITRLFSYLLELAECDLNYDVRDRA 501 (895)
Q Consensus 477 ~l~~L~qyvL~la~~D~n~DVRDRA 501 (895)
.....+.|++++..+|.++=+|++-
T Consensus 900 ~~~~~l~~~leil~~~~dp~~R~~i 924 (1180)
T KOG1932|consen 900 GSPDDLAYILEILENDPDPVIRHKI 924 (1180)
T ss_pred CChHHHHHHhhhcccCcchHHHHHH
Confidence 1234678899999999999888764
No 140
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=54.23 E-value=22 Score=37.06 Aligned_cols=51 Identities=22% Similarity=0.206 Sum_probs=39.4
Q ss_pred hhHHHHHHHHHHhcCCChhHHHHHHHHHHHh---CCCCccchHHHHHHHHHhCC
Q 002667 47 ITSAIEEIVGILLNDRSPGVVGAAAAAFASI---CPNNFTLIGRNYRNLCQILP 97 (895)
Q Consensus 47 ~~~~L~eil~~LL~D~~p~VvgsAv~Af~EI---cP~r~dLihk~yrkLc~~L~ 97 (895)
-.++|+--|+.-|+-+++.|+.+++.++..+ .+---.-+-++||.|+..|.
T Consensus 77 vlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG~aLvPyyrqLLp~ln 130 (183)
T PF10274_consen 77 VLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVGEALVPYYRQLLPVLN 130 (183)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 3467777788889999999999999999888 44334567788999888544
No 141
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=54.02 E-value=1.6e+02 Score=32.52 Aligned_cols=121 Identities=13% Similarity=0.194 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHHhCC----------cccccccccce-ecc--------CCcHHHHHHHH
Q 002667 240 DVKRIVKPLLFILRS-SGASKYVVLCNIQVFAKALP----------HLFVPHYEDFF-VSS--------SDSYQSKALKL 299 (895)
Q Consensus 240 ~l~~~~~pLv~LL~s-~~eiqyvvL~~I~~i~~~~p----------~lF~~~l~~Ff-i~~--------sDp~~IK~lKL 299 (895)
.+..++.+++.|+.. .+++|.-++..+..|...-| +++.-+...++ |++ .+...+-....
T Consensus 116 ~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay 195 (282)
T PF10521_consen 116 HWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAY 195 (282)
T ss_pred hhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHH
Confidence 466788899999975 68999999999988886444 22333332222 222 33456666667
Q ss_pred HHHHhhcC----------CCCHHHHHHH--HHHhhccCC---hhHHHHHHHHHHHHHhhCcchHHHHHHHHHHHHH
Q 002667 300 EILSSIVT----------ESSISSVFKE--FQDYIRDPD---RRFAADTVAAIGLCARKLPKMANTCVEGLLALIR 360 (895)
Q Consensus 300 eIL~~Lan----------e~Nv~~IL~E--L~~Yv~~~D---~ef~~~aI~AIG~~A~~~p~~a~~cl~~Ll~LLs 360 (895)
..|..|+. ..+...+++| |..|..-.+ ..++....+.+..+...+.-.+-.+++-++.+|.
T Consensus 196 ~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~~l~ 271 (282)
T PF10521_consen 196 PALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQRIIPVLS 271 (282)
T ss_pred HHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 77777722 2345667777 344444333 5666666666666655555555555555555443
No 142
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=54.01 E-value=25 Score=42.68 Aligned_cols=77 Identities=19% Similarity=0.140 Sum_probs=53.0
Q ss_pred CCCccchhhhHHHHHHHHhhcCCCCchhhHHHHHHHHHHhccCCcc-hhHHHHHHHHHHhcCCChhHHHHHHHHHHHhCC
Q 002667 1 MAGIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEE-ITSAIEEIVGILLNDRSPGVVGAAAAAFASICP 79 (895)
Q Consensus 1 MssIRv~~I~piv~~aIkk~l~D~SPYVRK~AA~AI~Kly~ld~pd-~~~~L~eil~~LL~D~~p~VvgsAv~Af~EIcP 79 (895)
++.+..|.+++.+.+-+. +-...++++|..|+.|+.++-..+ |+ ..+.|..+. +-.+.++-|-.+|+.++.+.-|
T Consensus 470 LGN~g~~~~i~~l~~~l~-~~~~~~~~iR~~Av~Alr~~a~~~-p~~v~~~l~~i~--~n~~e~~EvRiaA~~~lm~t~P 545 (574)
T smart00638 470 LGNAGHPSSIKVLEPYLE-GAEPLSTFIRLAAILALRNLAKRD-PRKVQEVLLPIY--LNRAEPPEVRMAAVLVLMETKP 545 (574)
T ss_pred hhccCChhHHHHHHHhcC-CCCCCCHHHHHHHHHHHHHHHHhC-chHHHHHHHHHH--cCCCCChHHHHHHHHHHHhcCC
Confidence 355677778777777776 566778889999988888776656 55 233333332 1135667888888888888878
Q ss_pred CC
Q 002667 80 NN 81 (895)
Q Consensus 80 ~r 81 (895)
..
T Consensus 546 ~~ 547 (574)
T smart00638 546 SV 547 (574)
T ss_pred CH
Confidence 75
No 143
>COG5593 Nucleic-acid-binding protein possibly involved in ribosomal biogenesis [Translation, ribosomal structure and biogenesis]
Probab=53.48 E-value=1.5e+02 Score=35.64 Aligned_cols=134 Identities=16% Similarity=0.206 Sum_probs=87.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHHh-------------CC-------------cccc
Q 002667 226 LAAAGVHWIMSPKEDVKRIVKPLLFILRS-SGASKYVVLCNIQVFAKA-------------LP-------------HLFV 278 (895)
Q Consensus 226 laaa~l~~~lap~~~l~~~~~pLv~LL~s-~~eiqyvvL~~I~~i~~~-------------~p-------------~lF~ 278 (895)
+.|..+...=+|.+.. .....|+.++.. ++|+.|-+|.+|.-+... .| .+|+
T Consensus 104 IsalTLLVq~sP~h~~-k~letLls~C~kksrn~a~q~l~~lKDLfi~gllp~rklry~k~q~~lsk~v~~k~l~~~~fe 182 (821)
T COG5593 104 ISALTLLVQRSPSHNA-KNLETLLSFCEKKSRNVAYQVLKNLKDLFISGLLPNRKLRYFKNQPGLSKEVQNKYLKQRIFE 182 (821)
T ss_pred hhhhHhhhccCcchHH-HHHHHHHHHHhcccccHHHHHHHHHHHHHhcccCcchhhHhhhcCcchhhhhcchHHHHHHHH
Confidence 3344444444443222 233445555553 678888888888665432 12 2577
Q ss_pred ccccccee--------ccCCc-HHHHHHHHHHHHhhcCCC--CHHHHHHHHHHhhccCChhHHHHHHHHHHHHHhhCcch
Q 002667 279 PHYEDFFV--------SSSDS-YQSKALKLEILSSIVTES--SISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKM 347 (895)
Q Consensus 279 ~~l~~Ffi--------~~sDp-~~IK~lKLeIL~~Lane~--Nv~~IL~EL~~Yv~~~D~ef~~~aI~AIG~~A~~~p~~ 347 (895)
.|++.||. +..|| .|||..-+...+.|.... --..+|+=+..=+.+.+..+..+|--.|-++-...|.+
T Consensus 183 sflk~l~fr~levle~ls~d~i~~Vk~qvv~~VydLL~a~peqe~nLl~L~INKlGDk~~kvsskasY~ilkLe~~hP~m 262 (821)
T COG5593 183 SFLKNLRFRVLEVLEVLSHDPIQYVKKQVVRLVYDLLEARPEQEVNLLHLFINKLGDKRDKVSSKASYVILKLELLHPGM 262 (821)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHhhccchhhhhhhhhHHHHHHHhcCCch
Confidence 77776654 56888 599999999999886554 33345665666666666677778888888888888888
Q ss_pred HHHHHHHHHHHHH
Q 002667 348 ANTCVEGLLALIR 360 (895)
Q Consensus 348 a~~cl~~Ll~LLs 360 (895)
-..+++.+.++.-
T Consensus 263 k~VV~d~Iedf~f 275 (821)
T COG5593 263 KEVVLDGIEDFYF 275 (821)
T ss_pred hHHHHhhhhHhee
Confidence 8777777777653
No 144
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=53.37 E-value=60 Score=33.94 Aligned_cols=50 Identities=16% Similarity=0.177 Sum_probs=40.0
Q ss_pred hhHHHHHHHHhhcCCCCchhhHHHHHHHHHHhccCCcchhHHHHHHHHHHh
Q 002667 9 ISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILL 59 (895)
Q Consensus 9 I~piv~~aIkk~l~D~SPYVRK~AA~AI~Kly~ld~pd~~~~L~eil~~LL 59 (895)
++|-++.+||+++..++|-|.+++..++.++-... +---+.|...+.+||
T Consensus 77 vlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~-~~vG~aLvPyyrqLL 126 (183)
T PF10274_consen 77 VLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSS-DMVGEALVPYYRQLL 126 (183)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHH
Confidence 46778889999999999999999999999886555 445567888877775
No 145
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=52.89 E-value=1.7e+02 Score=34.91 Aligned_cols=165 Identities=13% Similarity=0.162 Sum_probs=91.2
Q ss_pred cchHHHHHHHHHHHHhCC-ccccccccc-----ceeccC-CcHHHHHHHHHHHHhhcCCC------CHHHHHHHHHHhhc
Q 002667 257 ASKYVVLCNIQVFAKALP-HLFVPHYED-----FFVSSS-DSYQSKALKLEILSSIVTES------SISSVFKEFQDYIR 323 (895)
Q Consensus 257 eiqyvvL~~I~~i~~~~p-~lF~~~l~~-----Ffi~~s-Dp~~IK~lKLeIL~~Lane~------Nv~~IL~EL~~Yv~ 323 (895)
+-+--+|..|..|..... .+.+.|+.. |-+..+ ....+|.+.|.+|..+++.. ..+..+..+.+-..
T Consensus 302 ~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ 381 (516)
T KOG2956|consen 302 SERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAK 381 (516)
T ss_pred hHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHh
Confidence 445678888888876542 444555443 223332 34569999999999888643 44555666666666
Q ss_pred cCChhHHHHHHHHHHHHHhhCcchHHHHHHHHHHHHHhhhccccccCCCCCCchhhhHHHHHHHHHhhCCcch-HHHHHH
Q 002667 324 DPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQDPSCH-EKVIIQ 402 (895)
Q Consensus 324 ~~D~ef~~~aI~AIG~~A~~~p~~a~~cl~~Ll~LLs~~~~~~~~~~~~~~~~vv~E~V~vik~Llq~~P~~~-~~ii~~ 402 (895)
+.+++.++.|..+.-++ +-.++ --++|++|+.+|+...+.. ..+|+.
T Consensus 382 ds~~~v~~~Aeed~~~~--------------las~~------------------P~~~I~~i~~~Ilt~D~~~~~~~iKm 429 (516)
T KOG2956|consen 382 DSQDEVMRVAEEDCLTT--------------LASHL------------------PLQCIVNISPLILTADEPRAVAVIKM 429 (516)
T ss_pred CCchhHHHHHHHHHHHH--------------HHhhC------------------chhHHHHHhhHHhcCcchHHHHHHHH
Confidence 66666665555443222 21111 1124445666665522222 233444
Q ss_pred HHHhhhccCchhhHHhhhhhhccccCCCCCccchHHHHHHHHHHhhccCcHHHHHHHHHHHHHHhhhcC
Q 002667 403 LFRSLDSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAK 471 (895)
Q Consensus 403 L~~~ld~i~~p~ArAsIiWLLGEY~~~~e~ip~ia~dvLr~l~k~F~~E~~~VKlqILtaaaKL~~~~p 471 (895)
+.+.++.++..+.- .+++|+.--+++.|..-+..||-..+-..+-++.+-.
T Consensus 430 ~Tkl~e~l~~EeL~------------------~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG 480 (516)
T KOG2956|consen 430 LTKLFERLSAEELL------------------NLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVG 480 (516)
T ss_pred HHHHHhhcCHHHHH------------------HhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHh
Confidence 44555555433221 1234444445667877777777777666666665543
No 146
>PF05110 AF-4: AF-4 proto-oncoprotein; InterPro: IPR007797 This family consist of family member 1 (proto-oncogene AF4), family member 2 or FMR2 (Fragile X E mental retardation syndrome), family member 3 or LAF4 (lymphoid nuclear protein related to AF4) and family member 4 (protein lilliputian). Lilliputian is a Drosophila AF4 protein homologue which contains an AT-hook domain. It represents a novel pair-rule gene that acts in cytoskeleton regulation, segmentation and morphogenesis in Drosophila []. These proteins have been linked to Homo sapiens diseases such as acute lymphoblastic leukemia and mental retardation [].
Probab=52.72 E-value=16 Score=47.98 Aligned_cols=13 Identities=46% Similarity=1.030 Sum_probs=6.0
Q ss_pred CCCCccchHHHHH
Q 002667 78 CPNNFTLIGRNYR 90 (895)
Q Consensus 78 cP~r~dLihk~yr 90 (895)
+|..+.|+-.-|.
T Consensus 27 f~~~~pLF~ePYK 39 (1191)
T PF05110_consen 27 FPENFPLFGEPYK 39 (1191)
T ss_pred cCcCCccccCccc
Confidence 3444455444444
No 147
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=52.14 E-value=17 Score=34.93 Aligned_cols=37 Identities=27% Similarity=0.329 Sum_probs=30.9
Q ss_pred cchhHHHHHHHHHHhcCCChhHHHHHHHHHHHhCCCC
Q 002667 45 EEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNN 81 (895)
Q Consensus 45 pd~~~~L~eil~~LL~D~~p~VvgsAv~Af~EIcP~r 81 (895)
|+-....+++|-.-|.|.++.|+..|+.+|.|.|++.
T Consensus 3 ~~f~~w~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~ 39 (115)
T PF14663_consen 3 PDFEDWGIELLVTQLYDPSPEVVAAALEILEEACEDK 39 (115)
T ss_pred cHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhch
Confidence 3444566777777789999999999999999999987
No 148
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.25 E-value=7.3e+02 Score=32.97 Aligned_cols=76 Identities=16% Similarity=0.101 Sum_probs=49.1
Q ss_pred cchHHHHHHHHHHhhccCcHHHHHHHHHHHHHHhhhcCCC-ChHHHHHHHHHHHHHHccCCChHHHhHHHHHHHHccC
Q 002667 434 PRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGG-DMWTITRLFSYLLELAECDLNYDVRDRARFFKKLFSH 510 (895)
Q Consensus 434 p~ia~dvLr~l~k~F~~E~~~VKlqILtaaaKL~~~~p~e-~~~~l~~L~qyvL~la~~D~n~DVRDRAr~y~~LL~~ 510 (895)
+.++.+++-.+...+..+...++..-|.++.-++...... +.+.+.++++.| .+.-...+.+|+-=|.=+-+.+-.
T Consensus 780 ~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V-~~~L~s~sreI~kaAI~fikvlv~ 856 (1176)
T KOG1248|consen 780 SAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNILDDETLEKLISMV-CLYLASNSREIAKAAIGFIKVLVY 856 (1176)
T ss_pred HHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHH-HHHHhcCCHHHHHHHHHHHHHHHH
Confidence 4467888888888888888888877566666666555432 223455555543 334456789998888655555433
No 149
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=50.73 E-value=1e+02 Score=35.64 Aligned_cols=17 Identities=6% Similarity=0.088 Sum_probs=9.0
Q ss_pred hhHHHHHHHHHhhCCcc
Q 002667 379 IQSIISIKSIIKQDPSC 395 (895)
Q Consensus 379 ~E~V~vik~Llq~~P~~ 395 (895)
.-|+-.++.|...+|+.
T Consensus 126 ~~cletL~El~l~~P~l 142 (371)
T PF14664_consen 126 RICLETLCELALLNPEL 142 (371)
T ss_pred HHHHHHHHHHHhhCHHH
Confidence 33444555555556653
No 150
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=50.69 E-value=1.5e+02 Score=36.26 Aligned_cols=194 Identities=12% Similarity=0.185 Sum_probs=100.7
Q ss_pred cHHHHHHHHHHHHhhcCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHHHhhCcchHHHHHHHHHHHHHhhhccccccC
Q 002667 291 SYQSKALKLEILSSIVTESSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIES 370 (895)
Q Consensus 291 p~~IK~lKLeIL~~Lane~Nv~~IL~EL~~Yv~~~D~ef~~~aI~AIG~~A~~~p~~a~~cl~~Ll~LLs~~~~~~~~~~ 370 (895)
...+|..=+|+|....|...+..|.+.+.. ..... .++++.|..++.....-....|+.+..|+......
T Consensus 377 ~~~~r~~~lDal~~aGT~~av~~i~~~I~~--~~~~~---~ea~~~l~~l~~~~~~Pt~e~l~~l~~L~~~~~~~----- 446 (618)
T PF01347_consen 377 KEQARKIFLDALPQAGTNPAVKFIKDLIKS--KKLTD---DEAAQLLASLPFHVRRPTEELLKELFELAKSPKVK----- 446 (618)
T ss_dssp -HHHHHHHHHHHHHH-SHHHHHHHHHHHHT--T-S-H---HHHHHHHHHHHHT-----HHHHHHHHHHHT-HHHH-----
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHc--CCCCH---HHHHHHHHHHHhhcCCCCHHHHHHHHHHHhCcccc-----
Confidence 367899999999999999888888877765 22222 23455555555555455667788888887642111
Q ss_pred CCCCCchhhh-HHHHHHHHHhh---C-----------CcchHHHHHHHHHhhhcc---CchhhHHhhhhhhccccCCCCC
Q 002667 371 GNGEADVLIQ-SIISIKSIIKQ---D-----------PSCHEKVIIQLFRSLDSI---KVPEARVMIIWMVGEYSSVGVK 432 (895)
Q Consensus 371 ~~~~~~vv~E-~V~vik~Llq~---~-----------P~~~~~ii~~L~~~ld~i---~~p~ArAsIiWLLGEY~~~~e~ 432 (895)
+...+.+ ++..+-.++.+ + .....+++..|.+.+... .+..-+..+|=-||--+
T Consensus 447 ---~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g----- 518 (618)
T PF01347_consen 447 ---NSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLG----- 518 (618)
T ss_dssp ---T-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-----
T ss_pred ---CChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccC-----
Confidence 1123444 45566666653 2 122334455555555421 22234444455566443
Q ss_pred ccchHHHHHHHHHHhhccCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHccCCChHHHhHHHHHHHHccCC
Q 002667 433 IPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTITRLFSYLLELAECDLNYDVRDRARFFKKLFSHN 511 (895)
Q Consensus 433 ip~ia~dvLr~l~k~F~~E~~~VKlqILtaaaKL~~~~p~e~~~~l~~L~qyvL~la~~D~n~DVRDRAr~y~~LL~~~ 511 (895)
.|.+++.+..++. .-...+..+|.+.+.++-++-...|. .+..++--++.- ...++|||==| |..|+.+.
T Consensus 519 ~~~~i~~l~~~i~-~~~~~~~~~R~~Ai~Alr~~~~~~~~----~v~~~l~~I~~n--~~e~~EvRiaA--~~~lm~~~ 588 (618)
T PF01347_consen 519 HPESIPVLLPYIE-GKEEVPHFIRVAAIQALRRLAKHCPE----KVREILLPIFMN--TTEDPEVRIAA--YLILMRCN 588 (618)
T ss_dssp -GGGHHHHHTTST-TSS-S-HHHHHHHHHTTTTGGGT-HH----HHHHHHHHHHH---TTS-HHHHHHH--HHHHHHT-
T ss_pred CchhhHHHHhHhh-hccccchHHHHHHHHHHHHHhhcCcH----HHHHHHHHHhcC--CCCChhHHHHH--HHHHHhcC
Confidence 3555544443332 33245678999999998888555554 233333333321 23578888877 46667664
No 151
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=48.86 E-value=1.3e+02 Score=30.10 Aligned_cols=73 Identities=18% Similarity=0.112 Sum_probs=49.7
Q ss_pred HHHHHhhhhhccCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh-cCCCcchHHHHHHHHHHHHhCCccccccc
Q 002667 207 KLLLQCTSPLLWSHNSAVVLAAAGVHWIMSPKEDVKRIVKPLLFIL-RSSGASKYVVLCNIQVFAKALPHLFVPHY 281 (895)
Q Consensus 207 ~lLL~~~~pLLqS~NsAVVlaaa~l~~~lap~~~l~~~~~pLv~LL-~s~~eiqyvvL~~I~~i~~~~p~lF~~~l 281 (895)
.++-+++.+.+...+=+.+++.+-.+=. . ...-+.++++|.+-| ..++++++.+|..+..++..+...|...+
T Consensus 7 ~~I~kATs~~l~~~dw~~ileicD~In~-~-~~~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~ev 80 (142)
T cd03569 7 ELIEKATSELLGEPDLASILEICDMIRS-K-DVQPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEV 80 (142)
T ss_pred HHHHHHcCcccCccCHHHHHHHHHHHhC-C-CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHH
Confidence 3455667777777777777777766421 1 122345666776444 46799999999999999988877666544
No 152
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.56 E-value=9.3e+02 Score=33.10 Aligned_cols=78 Identities=13% Similarity=0.125 Sum_probs=52.6
Q ss_pred CchhhHHHHHHHHHHhccCCcc----hhHHHHHHHHHHhcCCChhHHHHHHHHHHHhCCCCccchHHHHHHHHHhCC---
Q 002667 25 SVFVRKCAANALPKLHELRQEE----ITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNNFTLIGRNYRNLCQILP--- 97 (895)
Q Consensus 25 SPYVRK~AA~AI~Kly~ld~pd----~~~~L~eil~~LL~D~~p~VvgsAv~Af~EIcP~r~dLihk~yrkLc~~L~--- 97 (895)
..--||-||++..++-.-. -+ ...+|++.|.+-=-|.++.|-+|-..-...+.+|+-..+-++|..+++-|.
T Consensus 970 ~wnSk~GaAfGf~~i~~~a-~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~l 1048 (1702)
T KOG0915|consen 970 TWNSKKGAAFGFGAIAKQA-GEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNL 1048 (1702)
T ss_pred hhhcccchhhchHHHHHHH-HHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhc
Confidence 3446899999999887653 12 344556555555569999998876667778889876666666555544432
Q ss_pred CCChhh
Q 002667 98 DVEEWG 103 (895)
Q Consensus 98 d~dEWg 103 (895)
...||-
T Consensus 1049 t~kewR 1054 (1702)
T KOG0915|consen 1049 TSKEWR 1054 (1702)
T ss_pred cchhHH
Confidence 268897
No 153
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=47.39 E-value=1.8e+02 Score=36.39 Aligned_cols=112 Identities=19% Similarity=0.354 Sum_probs=73.3
Q ss_pred ccccccccceeccCCcHHHHHHHHHHHHhhcCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHHHhhCcchHHHH----
Q 002667 276 LFVPHYEDFFVSSSDSYQSKALKLEILSSIVTESSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTC---- 351 (895)
Q Consensus 276 lF~~~l~~Ffi~~sDp~~IK~lKLeIL~~Lane~Nv~~IL~EL~~Yv~~~D~ef~~~aI~AIG~~A~~~p~~a~~c---- 351 (895)
.+..++-++|...+- ...++||+.+ -+-+-+.++..|.+|+.. ...+..++.-+|.+..+-|.+.-.+
T Consensus 39 ~l~~~l~~y~~~t~s-----~~~~~il~~~-~~P~~K~~~~~l~~~~~~--~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~ 110 (668)
T PF04388_consen 39 WLVNGLVDYYLSTNS-----QRALEILVGV-QEPHDKHLFDKLNDYFVK--PSYRLQALTLLGHFVRSQPPWLYKILQTP 110 (668)
T ss_pred HHHHHHHHHHhhcCc-----HHHHHHHHhc-CCccHHHHHHHHHHHHcC--chhHHHHHHHHHHHHhcCCchHHHHhcCh
Confidence 334445555554432 2457788764 455568888999999884 4688889999999999998887654
Q ss_pred -HHHHHHHHHhhhccccccCCCCCCchhhhHHHHHHHHHhhCCcchHHHHHHHHH
Q 002667 352 -VEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQDPSCHEKVIIQLFR 405 (895)
Q Consensus 352 -l~~Ll~LLs~~~~~~~~~~~~~~~~vv~E~V~vik~Llq~~P~~~~~ii~~L~~ 405 (895)
+..|+++|..+ .+..+|.-++.+|.-||=.-|......+..|..
T Consensus 111 Lf~~LLk~L~~D----------~~~~~~~~al~~LimlLP~ip~~l~~~L~~Lf~ 155 (668)
T PF04388_consen 111 LFKSLLKCLQFD----------TSITVVSSALLVLIMLLPHIPSSLGPHLPDLFN 155 (668)
T ss_pred hHHHHHHHHhhc----------ccHHHHHHHHHHHHHHhccccchhhHHHHHHHH
Confidence 45666666642 234456667777777776666554444444433
No 154
>PF13981 SopA: SopA-like central domain; PDB: 3NB2_B 3NAW_B 3SQV_B 2QZA_B 3SY2_B 2QYU_A.
Probab=46.88 E-value=65 Score=32.05 Aligned_cols=106 Identities=17% Similarity=0.178 Sum_probs=63.0
Q ss_pred HHHHHHHhhh--ccCchhhHHhhhhhhccccCCCCCccchHHHHHHHHHHhhccC-------cHHHHHHHHHHHHHHhhh
Q 002667 399 VIIQLFRSLD--SIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSE-------AVETKLQILNTTIKVLLC 469 (895)
Q Consensus 399 ii~~L~~~ld--~i~~p~ArAsIiWLLGEY~~~~e~ip~ia~dvLr~l~k~F~~E-------~~~VKlqILtaaaKL~~~ 469 (895)
.+.+|++.|+ .+.....+.++.-++++.+-..+ |.| ...++.+.++|..- ......++|+++.+.|-+
T Consensus 7 l~~qLi~sL~~~~~~~~~~~~sL~~i~s~~pYi~d--~~I-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~F~r 83 (135)
T PF13981_consen 7 LAKQLIKSLDQGDVDISNVALSLNDILSKPPYIND--PEI-ASWLQKLCENFFDNFNLQLMNKDKLNQAILNFFIDRFSR 83 (135)
T ss_dssp HHHHHHCCCHTTTTSCHHHHHHHHHHHTSTTTTC---HHH-HHHHHHHHHHHHHHHHHHC---HHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHccccchhhHhhHhHHHHHhccCcccCC--HHH-HHHHHHHHHHHHHHHHHHHhhccccCHHHHHHHHHHHHh
Confidence 4555665552 33333356667788888765422 333 35566665555422 123445899999999999
Q ss_pred cCCCChHHHHHHHHHHHHHHccCCChHHHhHHHHHHHHc
Q 002667 470 AKGGDMWTITRLFSYLLELAECDLNYDVRDRARFFKKLF 508 (895)
Q Consensus 470 ~p~e~~~~l~~L~qyvL~la~~D~n~DVRDRAr~y~~LL 508 (895)
+|+-+..--.-+.| ++-.|.+..+..++..|+.+|.-.
T Consensus 84 ~pelm~~~N~~FIQ-~i~~~~~~~~~~~k~~A~~LY~~Y 121 (135)
T PF13981_consen 84 QPELMISNNGAFIQ-LIAQAMTHGDDEIKQKARDLYKKY 121 (135)
T ss_dssp TTTHHHHTHHHHHH-HHHHHCC-TSCCCHHHHHHHHHHH
T ss_pred CHhHHHHcccHHHH-HHHHHHHhccHHHHHHHHHHHHHH
Confidence 99743221233444 445567777889999998766544
No 155
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=46.47 E-value=60 Score=41.89 Aligned_cols=80 Identities=20% Similarity=0.175 Sum_probs=61.3
Q ss_pred cchhhhHHHHHHHHhhcCCCCchhhHHHHHHHHHHhccCCcchhHHHHHHHHHHhcCC-ChhHHHHHHHHHHHhCCCCcc
Q 002667 5 RLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDR-SPGVVGAAAAAFASICPNNFT 83 (895)
Q Consensus 5 Rv~~I~piv~~aIkk~l~D~SPYVRK~AA~AI~Kly~ld~pd~~~~L~eil~~LL~D~-~p~VvgsAv~Af~EIcP~r~d 83 (895)
-||+|++-++.-+-.+++|..-.||=.||-++.|+..-..++-.++.++-+-.+++-- ++.+--+|..||.|+.-..+.
T Consensus 334 dv~eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlL 413 (1133)
T KOG1943|consen 334 DVPEIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLL 413 (1133)
T ss_pred ccHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCc
Confidence 3899999999999999999999999999999999998773445555444333366533 366777888999999655444
Q ss_pred c
Q 002667 84 L 84 (895)
Q Consensus 84 L 84 (895)
+
T Consensus 414 l 414 (1133)
T KOG1943|consen 414 L 414 (1133)
T ss_pred c
Confidence 3
No 156
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=46.14 E-value=60 Score=31.99 Aligned_cols=73 Identities=15% Similarity=0.126 Sum_probs=49.8
Q ss_pred HHHHHhhhhhccCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH-HHhcCCCcchHHHHHHHHHHHHhCCccccccc
Q 002667 207 KLLLQCTSPLLWSHNSAVVLAAAGVHWIMSPKEDVKRIVKPLL-FILRSSGASKYVVLCNIQVFAKALPHLFVPHY 281 (895)
Q Consensus 207 ~lLL~~~~pLLqS~NsAVVlaaa~l~~~lap~~~l~~~~~pLv-~LL~s~~eiqyvvL~~I~~i~~~~p~lF~~~l 281 (895)
.++-+++.+.+.+.+-+.++..+-..=.- ...-+.+++.|. +|-..+|++++.+|..+..++...+..|...+
T Consensus 8 ~li~kATs~~~~~~Dw~~~l~icD~i~~~--~~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev 81 (140)
T PF00790_consen 8 ELIEKATSESLPSPDWSLILEICDLINSS--PDGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREV 81 (140)
T ss_dssp HHHHHHT-TTSSS--HHHHHHHHHHHHTS--TTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred HHHHHHhCcCCCCCCHHHHHHHHHHHHcC--CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 46777788888888888888777654222 233455666665 45556899999999999999998877666554
No 157
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=46.00 E-value=1.1e+02 Score=31.85 Aligned_cols=50 Identities=16% Similarity=0.200 Sum_probs=34.3
Q ss_pred chHHHHHHHHHHHHh-CCcccccccccceecc----------------CCc-HHHHHHHHHHHHhhcC
Q 002667 258 SKYVVLCNIQVFAKA-LPHLFVPHYEDFFVSS----------------SDS-YQSKALKLEILSSIVT 307 (895)
Q Consensus 258 iqyvvL~~I~~i~~~-~p~lF~~~l~~Ffi~~----------------sDp-~~IK~lKLeIL~~Lan 307 (895)
+|.-+|..+..|++. .|..|-.|...||.-. .|| .-+|...+.+|..|-.
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~ 69 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLE 69 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHH
Confidence 567788899999988 7777766666665433 455 4677777777776543
No 158
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=45.94 E-value=7.9e+02 Score=31.85 Aligned_cols=67 Identities=25% Similarity=0.265 Sum_probs=50.5
Q ss_pred HHHHHHHHHHhcCCChhHHHHHHHHHHHhCCCC--ccchHHHHHHHHHhCCCCChhhHHHHHHHHHhhh
Q 002667 49 SAIEEIVGILLNDRSPGVVGAAAAAFASICPNN--FTLIGRNYRNLCQILPDVEEWGQILLIEILLRYV 115 (895)
Q Consensus 49 ~~L~eil~~LL~D~~p~VvgsAv~Af~EIcP~r--~dLihk~yrkLc~~L~d~dEWgQv~iL~lL~rY~ 115 (895)
..+...+..+..|..|.|..+|+.+|.-.|... ..+..+..+-|.....+..+=.-..+|+.|..-+
T Consensus 490 ~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~~vl~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv 558 (1005)
T KOG2274|consen 490 HFLNATVNALTMDVPPPVKISAVRAFCGYCKVKVLLSLQPMILDGLLQLASKSSDEVLVLLMEALSSVV 558 (1005)
T ss_pred HHHHHHHHhhccCCCCchhHHHHHHHHhccCceeccccchHHHHHHHHHcccccHHHHHHHHHHHHHHh
Confidence 345556677778888999999999999998433 2445566788888888888877788888887766
No 159
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=45.65 E-value=7.7e+02 Score=31.65 Aligned_cols=104 Identities=20% Similarity=0.129 Sum_probs=58.0
Q ss_pred HHHHHHHhhcCCCCchhhHHHHHHHHHHhccCCcchhHHHHHHHHHHhcCC-ChhHHHHHHHHHHHhCCCCc-------c
Q 002667 12 LVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDR-SPGVVGAAAAAFASICPNNF-------T 83 (895)
Q Consensus 12 iv~~aIkk~l~D~SPYVRK~AA~AI~Kly~ld~pd~~~~L~eil~~LL~D~-~p~VvgsAv~Af~EIcP~r~-------d 83 (895)
.+..++++.+ ++.|-|||+|=-|+-.+ ..|..--+.+|.-+-++. ++..-++|..+|..-|-.+| .
T Consensus 6 ~l~~~l~qTl-~pdps~rk~aEr~L~~~-----e~q~~y~l~lL~Lv~~~~~d~~~r~aaav~fKN~iKr~W~~~~~~~~ 79 (960)
T KOG1992|consen 6 TLANYLLQTL-SPDPSVRKPAERALRSL-----EGQQNYPLLLLNLVANGQQDPQIRVAAAVYFKNYIKRNWIPAEDSPI 79 (960)
T ss_pred HHHHHHHhcC-CCCCccCchHHHHHHHh-----ccCCCchHHHHHHHhccCcChhHHHHHHHHHHHHHHhccCcCCCCcc
Confidence 3444444444 35578999998887644 223233344444333454 67788888899998885444 1
Q ss_pred chHH----HHHH-HHHhCCCCChhhHHHHHHHHHhhhhhcccccc
Q 002667 84 LIGR----NYRN-LCQILPDVEEWGQILLIEILLRYVVASHGLVK 123 (895)
Q Consensus 84 Lihk----~yrk-Lc~~L~d~dEWgQv~iL~lL~rY~r~~~~~~~ 123 (895)
.++. .+++ ++.++-....--|+.+=+.|.--+ ++.|++
T Consensus 80 ~i~~~~~e~ikslIv~lMl~s~~~iQ~qlseal~~Ig--~~DFP~ 122 (960)
T KOG1992|consen 80 KIIEEDREQIKSLIVTLMLSSPFNIQKQLSEALSLIG--KRDFPD 122 (960)
T ss_pred ccchhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh--ccccch
Confidence 2222 2222 333334444555777777776655 344443
No 160
>KOG1189 consensus Global transcriptional regulator, cell division control protein [Amino acid transport and metabolism]
Probab=45.00 E-value=15 Score=45.20 Aligned_cols=12 Identities=17% Similarity=0.216 Sum_probs=4.7
Q ss_pred CCCchhhHHHHH
Q 002667 23 DPSVFVRKCAAN 34 (895)
Q Consensus 23 D~SPYVRK~AA~ 34 (895)
|..||-.-+|.+
T Consensus 9 dd~~Y~KssAL~ 20 (960)
T KOG1189|consen 9 DDNPYQKSSALF 20 (960)
T ss_pred cccchhHHHHHH
Confidence 334443333333
No 161
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=44.57 E-value=5.7e+02 Score=29.80 Aligned_cols=182 Identities=15% Similarity=0.182 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHhhcCCC----CHHHHHHHHHHhh-ccCChhHHHHHHHHHHH----HHhhCcchHHHHHHHHHHHHHhh
Q 002667 292 YQSKALKLEILSSIVTES----SISSVFKEFQDYI-RDPDRRFAADTVAAIGL----CARKLPKMANTCVEGLLALIRQE 362 (895)
Q Consensus 292 ~~IK~lKLeIL~~Lane~----Nv~~IL~EL~~Yv-~~~D~ef~~~aI~AIG~----~A~~~p~~a~~cl~~Ll~LLs~~ 362 (895)
..+|.-.+++|..|+|.- -+..+++.+..-. ...+..-...++..+.- +..|..+.+...++.|+.+|..+
T Consensus 204 ~~~~~~~~~~la~LvNK~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~~lL~~~ 283 (415)
T PF12460_consen 204 EFSRLAALQLLASLVNKWPDDDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLATELLDKLLELLSSP 283 (415)
T ss_pred hHHHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhCCh
Confidence 457777777777777762 2344455444444 23333344444433322 23345555667777777777531
Q ss_pred hccccccCCCCCCchhhhHHHHHHHHHhhCCc-----------------chHHHHHHHHHhhhccCc---hhhHHhhhhh
Q 002667 363 LLTSDIESGNGEADVLIQSIISIKSIIKQDPS-----------------CHEKVIIQLFRSLDSIKV---PEARVMIIWM 422 (895)
Q Consensus 363 ~~~~~~~~~~~~~~vv~E~V~vik~Llq~~P~-----------------~~~~ii~~L~~~ld~i~~---p~ArAsIiWL 422 (895)
.. ...++++ +.-|+.-.++ .+..++..|.+.+..-.+ +....++..+
T Consensus 284 ~~----------g~~aA~~---f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~l 350 (415)
T PF12460_consen 284 EL----------GQQAAKA---FGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHL 350 (415)
T ss_pred hh----------HHHHHHH---HhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHH
Confidence 00 0122222 2222211011 134445555555544332 2223344455
Q ss_pred hccccCCCCCccchHHHHHHHHHHhhccCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHH
Q 002667 423 VGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTITRLFSYLLEL 488 (895)
Q Consensus 423 LGEY~~~~e~ip~ia~dvLr~l~k~F~~E~~~VKlqILtaaaKL~~~~p~e~~~~l~~L~qyvL~l 488 (895)
+.--...+ ..++ ++.++..+.+.....+..++...|.+..-+.-..|+-..+-+..++..++++
T Consensus 351 l~~vP~~v-l~~~-l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl~sLI~~LL~l 414 (415)
T PF12460_consen 351 LKNVPKSV-LLPE-LPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISEHLSSLIPRLLKL 414 (415)
T ss_pred HhhCCHHH-HHHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhc
Confidence 55211100 1233 4677888888888888889999999887776655432222344455555443
No 162
>PF06483 ChiC: Chitinase C; InterPro: IPR009470 This ~170 aa region is found at the C-terminal to the catalytic domain (IPR001223 from INTERPRO) found in members of glycoside hydrolase family 18.
Probab=44.42 E-value=89 Score=32.49 Aligned_cols=112 Identities=20% Similarity=0.284 Sum_probs=65.1
Q ss_pred CCeeEEEEecC-----CCCCCCCCeEEEEEEEEeCCCCce---eeeEeecccc----cchhhhhhhhhhhcccc-----c
Q 002667 740 NGLKVYYSFSS-----EASTISPQLVCLETFFENCSSETM---SEVTLVDEES----HKALDLADLTLATTASS-----L 802 (895)
Q Consensus 740 ~GL~v~Y~f~r-----~p~~~~~~mv~v~l~f~N~s~~~~---~~i~~~~~~~----~~~~~~~~~~~~~~~~~-----~ 802 (895)
.=|.|.+.|.- +-.++.|+ |.|+|+|+.+| .+|...-..+ .|-+.|+..+.....|+ -
T Consensus 34 ~~ldv~v~~~gf~~GD~NYPI~Pk-----l~iTNns~~~iPGGt~~~FD~ptSa~~~~kdqSG~g~~vi~sght~~g~Ni 108 (180)
T PF06483_consen 34 EALDVSVSFTGFKLGDSNYPINPK-----LTITNNSGQTIPGGTEFEFDYPTSAPDNAKDQSGFGLKVISSGHTAAGNNI 108 (180)
T ss_pred ceEEEEEEeCCcccCCCCCCcCCc-----EEEEcCCCcccCCccEEEEccccCCccccccccCCcEEEEecCCcccCCcc
Confidence 34556666553 44556665 57999999999 3444321111 12233433222211110 0
Q ss_pred cC-CCCCCCcc-cCCcccccCCCCeeEEEEEEecCCCCccceEEEEEcCCeeeeEee
Q 002667 803 TS-QSDLPTLV-PMEEITSLEPGQTMKRILEVRFHHHLLPLKLALHCNGKKLPVKLR 857 (895)
Q Consensus 803 ~~-~~~~~~~~-~f~~i~~l~p~~~~~~~~~i~f~~~~~~~~~~l~~~~~~~~v~~~ 857 (895)
-+ ..+..++. ..+.-++|+||+++++.|=.--+=+. |.+|.+..+++.|-++-.
T Consensus 109 GGL~gdfHrvs~tlp~wqslapG~s~~~~~~YyLPiSg-PsN~tv~~~g~~Yal~~d 164 (180)
T PF06483_consen 109 GGLKGDFHRVSFTLPAWQSLAPGASVELDMVYYLPISG-PSNFTVNIGGKTYALKFD 164 (180)
T ss_pred cccCCceEEEEEECCCccccCCCCEEEEeEEEEeccCC-CceEEEEECCEEEEEecc
Confidence 00 01111110 13566799999999999988888777 999999999999876654
No 163
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.16 E-value=68 Score=39.73 Aligned_cols=104 Identities=20% Similarity=0.164 Sum_probs=74.8
Q ss_pred hhHHHHHHHHhhcCCCCchhhHHHHHHHHHHhcc----CCcc--hhHHHHHHHHHHhcCCChhHHHHHHHHHHHhCCCCc
Q 002667 9 ISPLVLVAVGKCARDPSVFVRKCAANALPKLHEL----RQEE--ITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNNF 82 (895)
Q Consensus 9 I~piv~~aIkk~l~D~SPYVRK~AA~AI~Kly~l----d~pd--~~~~L~eil~~LL~D~~p~VvgsAv~Af~EIcP~r~ 82 (895)
|++-..--+.+.++|+-|-||.+|..++.|++.. - |. -++-+-.++..+-.|....|-.+++..+.++.-+-
T Consensus 217 i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~i-P~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np- 294 (1005)
T KOG1949|consen 217 IIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMI-PPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNP- 294 (1005)
T ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCc-
Confidence 4555666778999999999999999999998864 4 43 23334444555557888889888888888886432
Q ss_pred cchHHHHHHHH----HhCCCCChhhHHHHHHHHHhhh
Q 002667 83 TLIGRNYRNLC----QILPDVEEWGQILLIEILLRYV 115 (895)
Q Consensus 83 dLihk~yrkLc----~~L~d~dEWgQv~iL~lL~rY~ 115 (895)
+-|+.+..++ ..|.|-.|=-.+...+||.+..
T Consensus 295 -~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik 330 (1005)
T KOG1949|consen 295 -LSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIK 330 (1005)
T ss_pred -cchhHHHHHHHhcchhhhccchhHHHHHHHHHHHHH
Confidence 2344444444 3456888888999999998765
No 164
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=44.04 E-value=33 Score=24.42 Aligned_cols=29 Identities=38% Similarity=0.232 Sum_probs=19.0
Q ss_pred chhhHHHHHHHHHHhccCCcchhHHHHHHHHHHhcC
Q 002667 26 VFVRKCAANALPKLHELRQEEITSAIEEIVGILLND 61 (895)
Q Consensus 26 PYVRK~AA~AI~Kly~ld~pd~~~~L~eil~~LL~D 61 (895)
+.||+.||.++.++ -+ |+ -++.|..+|+|
T Consensus 1 ~~vR~~aa~aLg~~--~~-~~----a~~~L~~~l~d 29 (30)
T smart00567 1 PLVRHEAAFALGQL--GD-EE----AVPALIKALED 29 (30)
T ss_pred CHHHHHHHHHHHHc--CC-Hh----HHHHHHHHhcC
Confidence 47999999999987 12 33 33344555655
No 165
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=43.49 E-value=1.4e+02 Score=33.02 Aligned_cols=74 Identities=22% Similarity=0.127 Sum_probs=57.6
Q ss_pred chhhhHHHHHHHHhhcCCCCchhhHHHHHHHHHHhccCCcch---------hHHHHHHHHHHhc--------CCChhHHH
Q 002667 6 LHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEI---------TSAIEEIVGILLN--------DRSPGVVG 68 (895)
Q Consensus 6 v~~I~piv~~aIkk~l~D~SPYVRK~AA~AI~Kly~ld~pd~---------~~~L~eil~~LL~--------D~~p~Vvg 68 (895)
+..-.|.++++|-..+.|.+|.+|..++.++..+-.--.+.. .+.+.+.+..+|. |.+..++.
T Consensus 113 i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~ 192 (282)
T PF10521_consen 113 ISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQ 192 (282)
T ss_pred HHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHH
Confidence 345678999999999999999999999999999887431223 4456666777776 88888888
Q ss_pred HHHHHHHHhCC
Q 002667 69 AAAAAFASICP 79 (895)
Q Consensus 69 sAv~Af~EIcP 79 (895)
.|.-++..+++
T Consensus 193 ~ay~~L~~L~~ 203 (282)
T PF10521_consen 193 AAYPALLSLLK 203 (282)
T ss_pred HHHHHHHHHHH
Confidence 88888887753
No 166
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.26 E-value=48 Score=40.93 Aligned_cols=75 Identities=21% Similarity=0.167 Sum_probs=54.2
Q ss_pred HHHHHHHHhhcCCCCchhhHHHHHHHHHHhccCCcc-h---hHHHH----HHHHHHhcCCChhHHHHHHHHHHHhCCCCc
Q 002667 11 PLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEE-I---TSAIE----EIVGILLNDRSPGVVGAAAAAFASICPNNF 82 (895)
Q Consensus 11 piv~~aIkk~l~D~SPYVRK~AA~AI~Kly~ld~pd-~---~~~L~----eil~~LL~D~~p~VvgsAv~Af~EIcP~r~ 82 (895)
-+.-+.|-+++.-++--||-.||+-..-+|-+-.|| + .+.++ +.+..||.|.-|+|-+-|+--...+.-.=|
T Consensus 173 rL~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fW 252 (1005)
T KOG1949|consen 173 RLYKPILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFW 252 (1005)
T ss_pred HHHhHHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHH
Confidence 344566778999999999999999999999984377 2 23333 367889999999999888765444433333
Q ss_pred cch
Q 002667 83 TLI 85 (895)
Q Consensus 83 dLi 85 (895)
.+|
T Consensus 253 e~i 255 (1005)
T KOG1949|consen 253 EMI 255 (1005)
T ss_pred HHc
Confidence 333
No 167
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=43.12 E-value=3.5e+02 Score=29.25 Aligned_cols=111 Identities=13% Similarity=0.182 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHhcC-CCcchHHHHHHHHHHHHhC--Cccc----ccccccc---eeccCCcHHHHHHHHHHHHhhcCCCC
Q 002667 241 VKRIVKPLLFILRS-SGASKYVVLCNIQVFAKAL--PHLF----VPHYEDF---FVSSSDSYQSKALKLEILSSIVTESS 310 (895)
Q Consensus 241 l~~~~~pLv~LL~s-~~eiqyvvL~~I~~i~~~~--p~lF----~~~l~~F---fi~~sDp~~IK~lKLeIL~~Lane~N 310 (895)
+..+...++.++.+ ++.++..++.-+..++..+ +.-- ...-..| .|..+.| .++..+|+-=.
T Consensus 41 ~~~lK~~Il~~~~~~~~gvk~~~iKFle~vIl~qs~~~~~~~~~~~~~~d~SL~~vp~~Hp-~l~~~~Le~Ea------- 112 (239)
T PF11935_consen 41 MNELKDRILSLWDSENPGVKLAAIKFLERVILVQSPGSSDSPPRRGSPNDFSLSSVPPNHP-LLNPQQLEAEA------- 112 (239)
T ss_dssp HHHHHHHHHHGGGSSSHHHHHHHHHHHHHHHHHTS---TTS---GGGTTS--GGGS-TT-S-SS-HHHHHHHH-------
T ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCCCCccccccccCCCHHHcCCCCC-cCCHHHHHHHH-------
Confidence 56667777888776 4669999999888776543 1110 0111112 2223333 46666665433
Q ss_pred HHHHHHHHHHhhccCC--hhHHHHHHHHHHHHHhhCcchHHHHHHHHHHHHH
Q 002667 311 ISSVFKEFQDYIRDPD--RRFAADTVAAIGLCARKLPKMANTCVEGLLALIR 360 (895)
Q Consensus 311 v~~IL~EL~~Yv~~~D--~ef~~~aI~AIG~~A~~~p~~a~~cl~~Ll~LLs 360 (895)
..+++.|..++.+.. ..+....|.+++.+|.+=|.....++..|+.+-.
T Consensus 113 -~~lL~~Ll~~l~~~~i~~~~~~a~insL~~Iak~RP~~~~~Il~~ll~~~~ 163 (239)
T PF11935_consen 113 -NGLLDRLLDVLQSPHISSPLLTAIINSLSNIAKQRPQFMSRILPALLSFNP 163 (239)
T ss_dssp -HHHHHHHHHHHC-TT--HHHHHHHHHHHHHHHHHSGGGHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCc
Confidence 357888888887654 6788899999999999999999999999998754
No 168
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=42.95 E-value=2e+02 Score=29.20 Aligned_cols=43 Identities=16% Similarity=0.325 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhCCcccccccccc
Q 002667 241 VKRIVKPLLFILRSSGASKYVVLCNIQVFAKALPHLFVPHYEDF 284 (895)
Q Consensus 241 l~~~~~pLv~LL~s~~eiqyvvL~~I~~i~~~~p~lF~~~l~~F 284 (895)
+.+++.+++.++.. ....-.+|..+..+...+|..|.||...+
T Consensus 114 l~~~i~~ll~l~~~-~~~~~~~l~~L~~ll~~~ptt~rp~~~ki 156 (165)
T PF08167_consen 114 LPKFIQSLLQLLQD-SSCPETALDALATLLPHHPTTFRPFANKI 156 (165)
T ss_pred HHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHCCccccchHHHH
Confidence 56677788888775 56677899999999999999999996543
No 169
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=42.37 E-value=48 Score=36.60 Aligned_cols=61 Identities=20% Similarity=0.181 Sum_probs=30.6
Q ss_pred HHHHHHhhcCCCCchhhHHHHHHHHHHhccCCcchhHHHHHHHHHHhcCCChhHHHHHHHHHHHhC
Q 002667 13 VLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASIC 78 (895)
Q Consensus 13 v~~aIkk~l~D~SPYVRK~AA~AI~Kly~ld~pd~~~~L~eil~~LL~D~~p~VvgsAv~Af~EIc 78 (895)
-+.||-+++.|.|+.-|-.+|.++.++-+ |.-.+.|++.|.. .--.|+|--=|+-||-.|.
T Consensus 188 aI~al~~~l~~~SalfrhEvAfVfGQl~s---~~ai~~L~k~L~d--~~E~pMVRhEaAeALGaIa 248 (289)
T KOG0567|consen 188 AINALIDGLADDSALFRHEVAFVFGQLQS---PAAIPSLIKVLLD--ETEHPMVRHEAAEALGAIA 248 (289)
T ss_pred HHHHHHHhcccchHHHHHHHHHHHhhccc---hhhhHHHHHHHHh--hhcchHHHHHHHHHHHhhc
Confidence 34556666666666666666666554422 2233333333211 2234555555555555554
No 170
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=41.70 E-value=3.1e+02 Score=35.23 Aligned_cols=71 Identities=23% Similarity=0.101 Sum_probs=55.3
Q ss_pred hhhHHHHHHHHhhcCCCCchhhHHHHHHHHHHhccCCc-c----hhHHHHHHHHHHhcCCChhHHHHHHHHHHHhCC
Q 002667 8 VISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQE-E----ITSAIEEIVGILLNDRSPGVVGAAAAAFASICP 79 (895)
Q Consensus 8 ~I~piv~~aIkk~l~D~SPYVRK~AA~AI~Kly~ld~p-d----~~~~L~eil~~LL~D~~p~VvgsAv~Af~EIcP 79 (895)
.|++=+...+...+.|+.+==||.|+-.+.+...-. . + -.+.+.-.+...+.|.+..|++.|+..+..||-
T Consensus 249 di~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~-~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~ 324 (815)
T KOG1820|consen 249 DILSKITKNLETEMLSKKWKDRKEALEELVAILEEA-KKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAK 324 (815)
T ss_pred hhhhhcChHHHHhhhccchHHHHHHHHHHHHHHhcc-ccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHH
Confidence 456667778889999999999999999999887643 2 1 223344455566789999999999999999973
No 171
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=41.44 E-value=87 Score=30.61 Aligned_cols=71 Identities=14% Similarity=0.117 Sum_probs=47.6
Q ss_pred HHHhhhhhccCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh-cCCCcchHHHHHHHHHHHHhCCccccccc
Q 002667 209 LLQCTSPLLWSHNSAVVLAAAGVHWIMSPKEDVKRIVKPLLFIL-RSSGASKYVVLCNIQVFAKALPHLFVPHY 281 (895)
Q Consensus 209 LL~~~~pLLqS~NsAVVlaaa~l~~~lap~~~l~~~~~pLv~LL-~s~~eiqyvvL~~I~~i~~~~p~lF~~~l 281 (895)
+=+++.+.+...+-+.+++.+-.+-.- ...-+.++++|..-| .+++++++.+|..+-.++......|...+
T Consensus 5 I~kATs~~~~~~D~~~il~icd~I~~~--~~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i 76 (133)
T cd03561 5 IERATSPSLEEPDWALNLELCDLINLK--PNGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQV 76 (133)
T ss_pred HHHHcCcccCCccHHHHHHHHHHHhCC--CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHH
Confidence 345555666666777777776654322 223345666776444 46799999999999999998887776554
No 172
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=40.78 E-value=61 Score=40.15 Aligned_cols=63 Identities=22% Similarity=0.124 Sum_probs=45.8
Q ss_pred hhHHHHHHHHhhcCCCCchhhHHHHHHHHHHhccCCcchhHHHHHHHHHHh-cCCChhHHHHHHH
Q 002667 9 ISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILL-NDRSPGVVGAAAA 72 (895)
Q Consensus 9 I~piv~~aIkk~l~D~SPYVRK~AA~AI~Kly~ld~pd~~~~L~eil~~LL-~D~~p~VvgsAv~ 72 (895)
+.--+..++-+-+.|.-|-||.-|+.|+.++-... -+..-.+...+..++ +|.++-|-.+|+.
T Consensus 123 vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~-~dee~~v~n~l~~liqnDpS~EVRRaaLs 186 (892)
T KOG2025|consen 123 VFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDP-KDEECPVVNLLKDLIQNDPSDEVRRAALS 186 (892)
T ss_pred HHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCC-CCCcccHHHHHHHHHhcCCcHHHHHHHHH
Confidence 34456677888899999999999999999986543 222333555555666 7999999887644
No 173
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=40.02 E-value=58 Score=42.20 Aligned_cols=125 Identities=22% Similarity=0.373 Sum_probs=79.6
Q ss_pred hHHHHHHHHHhhCCcchHHHHHHHHHhh--hccC--chhhHHhhhhhhccccCCCCCccch--HHHHHHHHHHhhccCcH
Q 002667 380 QSIISIKSIIKQDPSCHEKVIIQLFRSL--DSIK--VPEARVMIIWMVGEYSSVGVKIPRM--LTTVLKYLAWCFKSEAV 453 (895)
Q Consensus 380 E~V~vik~Llq~~P~~~~~ii~~L~~~l--d~i~--~p~ArAsIiWLLGEY~~~~e~ip~i--a~dvLr~l~k~F~~E~~ 453 (895)
+.+...+..+|.+-+....++..+++.+ .... .|..|+.-+==||.++.. .|.+ -.-+|+++-|...+-..
T Consensus 264 e~Ll~~r~etqe~~d~i~~mi~~if~sVFVHRYRDV~~~IRaiCiqeLgiWi~~---yP~~Fl~dsYLKYiGWtLsDk~~ 340 (1048)
T KOG2011|consen 264 ESLLMLRKETQEQQDEIESMINDIFDSVFVHRYRDVDPDIRAICIQELGIWIKS---YPEIFLSDSYLKYIGWTLSDKNG 340 (1048)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhheeeeecccCchHHHHHHHHHHHHHHHh---ccHHHhcchHHHHhcceeecCcc
Confidence 4445555555555444444555555422 2222 478888766666665532 2221 13468999999999999
Q ss_pred HHHHHHHHHHHHHhhhcCCCChHHH----HHHHHHHHHHHccCCChHHHhHHHHHHHHcc
Q 002667 454 ETKLQILNTTIKVLLCAKGGDMWTI----TRLFSYLLELAECDLNYDVRDRARFFKKLFS 509 (895)
Q Consensus 454 ~VKlqILtaaaKL~~~~p~e~~~~l----~~L~qyvL~la~~D~n~DVRDRAr~y~~LL~ 509 (895)
.||++.|.++-|||-+. +....+ .++=..++++|-.|.|..||.=+....-++.
T Consensus 341 ~VRl~~lkaL~~L~e~~--~~~~~L~lFtsRFK~RIVeMadrd~~~~Vrav~L~~~~~~~ 398 (1048)
T KOG2011|consen 341 TVRLRCLKALIKLYEKD--EDKDKLELFTSRFKDRIVEMADRDRNVSVRAVGLVLCLLLS 398 (1048)
T ss_pred HHHHHHHHHHHHHHhcc--ccchHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHh
Confidence 99999999999999883 232233 3444578899877778888887766655553
No 174
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=39.92 E-value=62 Score=32.63 Aligned_cols=92 Identities=18% Similarity=0.159 Sum_probs=61.1
Q ss_pred CCCchhhHHHHHHHHHHhccCCcc-hhHHHHHHHHHHhcCCChhHHHHHHHHHHHhCCCCccchHHH------HHHHHHh
Q 002667 23 DPSVFVRKCAANALPKLHELRQEE-ITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNNFTLIGRN------YRNLCQI 95 (895)
Q Consensus 23 D~SPYVRK~AA~AI~Kly~ld~pd-~~~~L~eil~~LL~D~~p~VvgsAv~Af~EIcP~r~dLihk~------yrkLc~~ 95 (895)
...+-||-.|..++.|+++.. ++ -.+.+.+++..++.+.+..-...|+.++..+.|--.++-... ...|..+
T Consensus 16 ~~~~~~r~~a~v~l~k~l~~~-~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~ 94 (157)
T PF11701_consen 16 RQPEEVRSHALVILSKLLDAA-REEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPL 94 (157)
T ss_dssp TTSCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHH
T ss_pred CCCHhHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHH
Confidence 567889999999999998665 44 455678888888877666677778888888888655432221 1222222
Q ss_pred CC--CCChhhHHHHHHHHHhhh
Q 002667 96 LP--DVEEWGQILLIEILLRYV 115 (895)
Q Consensus 96 L~--d~dEWgQv~iL~lL~rY~ 115 (895)
.. .-++=-|..++++|..=|
T Consensus 95 ~~~~~~~~~~~~~~lell~aAc 116 (157)
T PF11701_consen 95 ASRKSKDRKVQKAALELLSAAC 116 (157)
T ss_dssp HH-CTS-HHHHHHHHHHHHHHT
T ss_pred HhcccCCHHHHHHHHHHHHHHH
Confidence 22 344445777777776544
No 175
>TIGR01451 B_ant_repeat conserved repeat domain. This model represents the conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis, and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydial outer membrane proteins.
Probab=39.34 E-value=37 Score=28.01 Aligned_cols=31 Identities=10% Similarity=0.034 Sum_probs=26.5
Q ss_pred CeEEEEEEEEeCCCCceeeeEeecccccchhhhhh
Q 002667 758 QLVCLETFFENCSSETMSEVTLVDEESHKALDLAD 792 (895)
Q Consensus 758 ~mv~v~l~f~N~s~~~~~~i~~~~~~~~~~~~~~~ 792 (895)
.-|...|+++|.++.+..+|.|.+. +|+|+.
T Consensus 12 d~v~Yti~v~N~g~~~a~~v~v~D~----lP~g~~ 42 (53)
T TIGR01451 12 DTITYTITVTNNGNVPATNVVVTDI----LPSGTT 42 (53)
T ss_pred CEEEEEEEEEECCCCceEeEEEEEc----CCCCCE
Confidence 4567889999999999999999985 788863
No 176
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=39.32 E-value=1.1e+02 Score=28.95 Aligned_cols=97 Identities=11% Similarity=0.047 Sum_probs=60.5
Q ss_pred HHHHhhhhhccCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh-cCCCcchHHHHHHHHHHHHhCCccccccccc--c
Q 002667 208 LLLQCTSPLLWSHNSAVVLAAAGVHWIMSPKEDVKRIVKPLLFIL-RSSGASKYVVLCNIQVFAKALPHLFVPHYED--F 284 (895)
Q Consensus 208 lLL~~~~pLLqS~NsAVVlaaa~l~~~lap~~~l~~~~~pLv~LL-~s~~eiqyvvL~~I~~i~~~~p~lF~~~l~~--F 284 (895)
++-+++.+-++..+...+++.+.+... .+...+.+++.|..-| ..++.++|-+|..|..++.....-|..++.. |
T Consensus 4 ~v~~AT~~~~~~p~~~~i~~i~d~~~~--~~~~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~ 81 (115)
T cd00197 4 TVEKATSNENMGPDWPLIMEICDLINE--TNVGPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDF 81 (115)
T ss_pred HHHHHcCCCCCCCCHHHHHHHHHHHHC--CCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHH
Confidence 344556666666677777777766532 2344566777776444 4578899999999999998887766654321 1
Q ss_pred e--------ecc--CC-cHHHHHHHHHHHHhhc
Q 002667 285 F--------VSS--SD-SYQSKALKLEILSSIV 306 (895)
Q Consensus 285 f--------i~~--sD-p~~IK~lKLeIL~~La 306 (895)
- ... .| +..||.+.++++...+
T Consensus 82 ~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w~ 114 (115)
T cd00197 82 AVELLKFDKSKLLGDDVSTNVREKAIELVQLWA 114 (115)
T ss_pred HHHHHHhhccccccCCCChHHHHHHHHHHHHHh
Confidence 1 111 12 4567777777766554
No 177
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=39.30 E-value=93 Score=31.02 Aligned_cols=72 Identities=15% Similarity=0.098 Sum_probs=53.8
Q ss_pred HHHHhhhhhccCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc-CCCcchHHHHHHHHHHHHhCCccccccc
Q 002667 208 LLLQCTSPLLWSHNSAVVLAAAGVHWIMSPKEDVKRIVKPLLFILR-SSGASKYVVLCNIQVFAKALPHLFVPHY 281 (895)
Q Consensus 208 lLL~~~~pLLqS~NsAVVlaaa~l~~~lap~~~l~~~~~pLv~LL~-s~~eiqyvvL~~I~~i~~~~p~lF~~~l 281 (895)
++-+++.+.+...|-+.+++.+-.+- -.| ..-+.++++|.+-|. .++++++.+|..+-.+++.+...|...+
T Consensus 5 ~iekAT~~~l~~~dw~~ileicD~In-~~~-~~~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~ev 77 (139)
T cd03567 5 WLNKATNPSNREEDWEAIQAFCEQIN-KEP-EGPQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEV 77 (139)
T ss_pred HHHHHcCccCCCCCHHHHHHHHHHHH-cCC-ccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence 56678888888889899998887753 233 234556777765555 4689999999999999998887776554
No 178
>KOG2051 consensus Nonsense-mediated mRNA decay 2 protein [RNA processing and modification]
Probab=39.15 E-value=6.2e+02 Score=33.22 Aligned_cols=97 Identities=14% Similarity=0.160 Sum_probs=66.1
Q ss_pred hhHHhhhhhhccccCCCCCccchHHHHHHHHHHhhccCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHccCC
Q 002667 414 EARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTITRLFSYLLELAECDL 493 (895)
Q Consensus 414 ~ArAsIiWLLGEY~~~~e~ip~ia~dvLr~l~k~F~~E~~~VKlqILtaaaKL~~~~p~e~~~~l~~L~qyvL~la~~D~ 493 (895)
..+-.++-+|||-|.....-+..+-.+|+.++..|..-.-++=+-+|..+.+.+++.|+-. .++..+++.+.. .+.+.
T Consensus 520 etk~~~VrfIsEL~KF~lv~~~~if~cLk~ll~dF~~hnIEm~c~lLE~~GrfLlr~pEt~-lrM~~~Le~i~r-kK~a~ 597 (1128)
T KOG2051|consen 520 ETKLKIVRFISELCKFQLVPKFEIFSCLKMLLNDFTHHNIEMACVLLESCGRFLLRSPETK-LRMRVFLEQIKR-KKRAS 597 (1128)
T ss_pred hhhhhhhhhHHhhhhhCccChHHHHHHHHHHHHhcccccHHHHHHHHHhcchhhhcChhHH-HHHHHHHHHHHH-HHHHh
Confidence 4555667888987754321223355678888888888888999999999999999998633 345666765543 34566
Q ss_pred ChHHHhHHHHHHHHccCCC
Q 002667 494 NYDVRDRARFFKKLFSHNL 512 (895)
Q Consensus 494 n~DVRDRAr~y~~LL~~~~ 512 (895)
.-|-|+-+..=.++..+.+
T Consensus 598 ~lDsr~~~~iENay~~~~P 616 (1128)
T KOG2051|consen 598 ALDSRQATLIENAYYLCNP 616 (1128)
T ss_pred hhchHHHHHHHHhHHhccC
Confidence 7777777766555554443
No 179
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=39.05 E-value=43 Score=25.59 Aligned_cols=27 Identities=26% Similarity=0.185 Sum_probs=20.2
Q ss_pred HHHHHHhhcCCCCchhhHHHHHHHHHH
Q 002667 13 VLVAVGKCARDPSVFVRKCAANALPKL 39 (895)
Q Consensus 13 v~~aIkk~l~D~SPYVRK~AA~AI~Kl 39 (895)
+++.+-+++.+.++-||+.|+-|+..|
T Consensus 13 ~i~~Lv~ll~~~~~~v~~~a~~al~nl 39 (41)
T PF00514_consen 13 GIPPLVQLLKSPDPEVQEEAAWALGNL 39 (41)
T ss_dssp HHHHHHHHTTSSSHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 456666777788888888888887654
No 180
>PF11611 DUF4352: Domain of unknown function (DUF4352); InterPro: IPR021652 This entry is represented by Bacteriophage A118, Gp32. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a group of putative lipoproteins of unknown function.; PDB: 3CFU_A.
Probab=38.94 E-value=94 Score=29.12 Aligned_cols=74 Identities=19% Similarity=0.230 Sum_probs=38.9
Q ss_pred CCeEEEEEEEEeCCCCcee----eeEeecccccchhhhhhhhhhhccccccCCCCCCCcccCCcccccCCCCeeEEEEEE
Q 002667 757 PQLVCLETFFENCSSETMS----EVTLVDEESHKALDLADLTLATTASSLTSQSDLPTLVPMEEITSLEPGQTMKRILEV 832 (895)
Q Consensus 757 ~~mv~v~l~f~N~s~~~~~----~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~i~~l~p~~~~~~~~~i 832 (895)
-+.+.|+++++|.+++++. +..+.+. +|-.......+. .. ..-.....|.||+++++.|..
T Consensus 35 ~~fv~v~v~v~N~~~~~~~~~~~~f~l~d~------~g~~~~~~~~~~-----~~----~~~~~~~~i~pG~~~~g~l~F 99 (123)
T PF11611_consen 35 NKFVVVDVTVKNNGDEPLDFSPSDFKLYDS------DGNKYDPDFSAS-----SN----DNDLFSETIKPGESVTGKLVF 99 (123)
T ss_dssp SEEEEEEEEEEE-SSS-EEEEGGGEEEE-T------T--B--EEE-CC-----CT----TTB--EEEE-TT-EEEEEEEE
T ss_pred CEEEEEEEEEEECCCCcEEecccceEEEeC------CCCEEcccccch-----hc----cccccccEECCCCEEEEEEEE
Confidence 4679999999999999884 3444322 121100000000 00 000234589999999999998
Q ss_pred ecCCCCccceEEE
Q 002667 833 RFHHHLLPLKLAL 845 (895)
Q Consensus 833 ~f~~~~~~~~~~l 845 (895)
+=....++..|+.
T Consensus 100 ~vp~~~~~~~l~~ 112 (123)
T PF11611_consen 100 EVPKDDKPYTLEY 112 (123)
T ss_dssp EESTT-GG-EEEE
T ss_pred EECCCCccEEEEE
Confidence 8888888866665
No 181
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=38.89 E-value=1.1e+02 Score=31.64 Aligned_cols=81 Identities=12% Similarity=0.055 Sum_probs=62.5
Q ss_pred hhhHHHHHHHHhhcCCCCchhhHHHHHHHHHHhccCCcchhHHHHHHHHHHhcCCChhHHHHHHHHHHHhCCCCccchHH
Q 002667 8 VISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNNFTLIGR 87 (895)
Q Consensus 8 ~I~piv~~aIkk~l~D~SPYVRK~AA~AI~Kly~ld~pd~~~~L~eil~~LL~D~~p~VvgsAv~Af~EIcP~r~dLihk 87 (895)
.|++--+..|-+++-+.++-||..|+.-|.-+-+.. =-+..+-+..|-.|..|.++.+-.-|...+.+++...-++++.
T Consensus 4 ~l~Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qG-LvnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~~ 82 (187)
T PF12830_consen 4 ALVQRYLKNILELCLSSDDSVRLAALQVLELILRQG-LVNPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVES 82 (187)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcC-CCChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHHH
Confidence 466777888999999999999999999998887753 1122345556667889999999999999999998665566655
Q ss_pred HH
Q 002667 88 NY 89 (895)
Q Consensus 88 ~y 89 (895)
.|
T Consensus 83 ~~ 84 (187)
T PF12830_consen 83 RY 84 (187)
T ss_pred HH
Confidence 44
No 182
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=38.68 E-value=33 Score=43.20 Aligned_cols=15 Identities=13% Similarity=-0.212 Sum_probs=7.6
Q ss_pred CcchHHHHHHHHHHH
Q 002667 256 GASKYVVLCNIQVFA 270 (895)
Q Consensus 256 ~eiqyvvL~~I~~i~ 270 (895)
|+++-.+|..|+..+
T Consensus 676 pei~~~AL~vIincV 690 (1516)
T KOG1832|consen 676 PEIIQPALNVIINCV 690 (1516)
T ss_pred HHHHHHHHhhhheee
Confidence 455555555554443
No 183
>PHA02664 hypothetical protein; Provisional
Probab=38.54 E-value=23 Score=39.52 Aligned_cols=27 Identities=26% Similarity=0.377 Sum_probs=17.1
Q ss_pred HHHHHHHHhhCcchHHHHHHHHHHHHH
Q 002667 334 VAAIGLCARKLPKMANTCVEGLLALIR 360 (895)
Q Consensus 334 I~AIG~~A~~~p~~a~~cl~~Ll~LLs 360 (895)
|..=..|++.-|.++.+.+-.|..+-+
T Consensus 242 iddecvcce~rphvartavwtlaeicr 268 (534)
T PHA02664 242 IDDECVCCELRPHVARTAVWTLAEICR 268 (534)
T ss_pred cccceeeecccCCchhhhhhhHHHHhC
Confidence 334456777778777777666666543
No 184
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=37.93 E-value=1.8e+02 Score=28.96 Aligned_cols=73 Identities=16% Similarity=0.126 Sum_probs=51.2
Q ss_pred HHHHHhhhhhccCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc-C-CCcchHHHHHHHHHHHHhCCccccccc
Q 002667 207 KLLLQCTSPLLWSHNSAVVLAAAGVHWIMSPKEDVKRIVKPLLFILR-S-SGASKYVVLCNIQVFAKALPHLFVPHY 281 (895)
Q Consensus 207 ~lLL~~~~pLLqS~NsAVVlaaa~l~~~lap~~~l~~~~~pLv~LL~-s-~~eiqyvvL~~I~~i~~~~p~lF~~~l 281 (895)
.++-+++.+.|..-|-+.+|+.+-.+=. +...-+.++++|..-|. + ++++++.+|.-+-.++..+...|...+
T Consensus 4 ~~IekATse~l~~~dw~~ileicD~In~--~~~~~k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~ei 78 (141)
T cd03565 4 QLIEKATDGSLQSEDWGLNMEICDIINE--TEDGPKDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLV 78 (141)
T ss_pred HHHHHHcCcCCCCcCHHHHHHHHHHHhC--CCCcHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHH
Confidence 3566778888888888888888876532 22334556666654333 3 577889999999999999887776443
No 185
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=37.70 E-value=1.7e+02 Score=34.88 Aligned_cols=96 Identities=18% Similarity=0.229 Sum_probs=68.7
Q ss_pred HHHHHHhhcCC-CCchhhHHHHHHHHHHhccCCcc-hhHHHHHHHHHHh---cCCChhHHHHHHHHH----HHhCCCCcc
Q 002667 13 VLVAVGKCARD-PSVFVRKCAANALPKLHELRQEE-ITSAIEEIVGILL---NDRSPGVVGAAAAAF----ASICPNNFT 83 (895)
Q Consensus 13 v~~aIkk~l~D-~SPYVRK~AA~AI~Kly~ld~pd-~~~~L~eil~~LL---~D~~p~VvgsAv~Af----~EIcP~r~d 83 (895)
++..+-+-+.| .++-.||-|.--|.|+..-. |. ..+.-...+.+.| +|..+.|++.|.-+. ..+.|..
T Consensus 330 iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q-~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~-- 406 (516)
T KOG2956|consen 330 ILLLLLEVLSDSEDEIIKKLALRVLREMLTNQ-PARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQ-- 406 (516)
T ss_pred HHHHHHHHHccchhhHHHHHHHHHHHHHHHhc-hHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchh--
Confidence 44567778888 77778888888888888765 65 2222333445555 699999999887763 3444543
Q ss_pred chHHHHHHHHHhCCCCChhhHHHHHHHHHhhh
Q 002667 84 LIGRNYRNLCQILPDVEEWGQILLIEILLRYV 115 (895)
Q Consensus 84 Lihk~yrkLc~~L~d~dEWgQv~iL~lL~rY~ 115 (895)
.+-.+|.+|...|+=--+.+|+|++|..
T Consensus 407 ----~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~ 434 (516)
T KOG2956|consen 407 ----CIVNISPLILTADEPRAVAVIKMLTKLF 434 (516)
T ss_pred ----HHHHHhhHHhcCcchHHHHHHHHHHHHH
Confidence 4556777777788888899999999987
No 186
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=37.04 E-value=7.2e+02 Score=28.82 Aligned_cols=144 Identities=15% Similarity=0.213 Sum_probs=79.2
Q ss_pred HHHHHHHhhccCChhHHHHHHHHHHHHHhhCcchHHHH--HHHHHHHHHhhhccccccCCCCCCchhhhHHH-HHHHHHh
Q 002667 314 VFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTC--VEGLLALIRQELLTSDIESGNGEADVLIQSII-SIKSIIK 390 (895)
Q Consensus 314 IL~EL~~Yv~~~D~ef~~~aI~AIG~~A~~~p~~a~~c--l~~Ll~LLs~~~~~~~~~~~~~~~~vv~E~V~-vik~Llq 390 (895)
|++=+-.-+.+.++.++..++..+..+|...|+..-+| +.+|++.+-. + ..-+.|++. ++-.++
T Consensus 109 vvralvaiae~~~D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~~l~d-----------~-~~~~~~~l~~~lL~lL- 175 (371)
T PF14664_consen 109 VVRALVAIAEHEDDRLRRICLETLCELALLNPELVAECGGIRVLLRALID-----------G-SFSISESLLDTLLYLL- 175 (371)
T ss_pred HHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHHHHHh-----------c-cHhHHHHHHHHHHHHh-
Confidence 44444445555777788888888888888888876555 5556655431 1 112555443 343443
Q ss_pred hCCcchHH-----HHHHHHHhhhcc-----C-------chhhHHhhhhhhccccCCCC-CccchHHHHHHHHHHhhccCc
Q 002667 391 QDPSCHEK-----VIIQLFRSLDSI-----K-------VPEARVMIIWMVGEYSSVGV-KIPRMLTTVLKYLAWCFKSEA 452 (895)
Q Consensus 391 ~~P~~~~~-----ii~~L~~~ld~i-----~-------~p~ArAsIiWLLGEY~~~~e-~ip~ia~dvLr~l~k~F~~E~ 452 (895)
..|..... -+..+..-+-+. . -..++.+|+-++--+..+.- ..++. .-+|-++..+.-..
T Consensus 176 d~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~--~~lksLv~~L~~p~ 253 (371)
T PF14664_consen 176 DSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDF--RGLKSLVDSLRLPN 253 (371)
T ss_pred CCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCc--hHHHHHHHHHcCCC
Confidence 33433221 122232222111 1 11234445555555543221 01111 34677777777778
Q ss_pred HHHHHHHHHHHHHHhhhcCC
Q 002667 453 VETKLQILNTTIKVLLCAKG 472 (895)
Q Consensus 453 ~~VKlqILtaaaKL~~~~p~ 472 (895)
..+|-.||.+...++-..+.
T Consensus 254 ~~ir~~Ildll~dllrik~p 273 (371)
T PF14664_consen 254 PEIRKAILDLLFDLLRIKPP 273 (371)
T ss_pred HHHHHHHHHHHHHHHCCCCC
Confidence 88999999999999865543
No 187
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=36.93 E-value=9e+02 Score=29.92 Aligned_cols=279 Identities=18% Similarity=0.147 Sum_probs=148.0
Q ss_pred hhhHHHHHHHHhhcCCCCchhhHHHHHHHHHHhccCCcc----hhHHHHHHHHHHhcCCChhHHHHHHHHHHHhC---CC
Q 002667 8 VISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEE----ITSAIEEIVGILLNDRSPGVVGAAAAAFASIC---PN 80 (895)
Q Consensus 8 ~I~piv~~aIkk~l~D~SPYVRK~AA~AI~Kly~ld~pd----~~~~L~eil~~LL~D~~p~VvgsAv~Af~EIc---P~ 80 (895)
-|+..|+.=|...++..+.-=|-+|++|...+.+=-..+ -..+..+.|..+.+|..-.|...+.-+|..|. |+
T Consensus 362 ~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va~ 441 (858)
T COG5215 362 KIMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAM 441 (858)
T ss_pred HhHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHHH
Confidence 466678888999999999999999999999875531012 23445556666778988888888877777663 22
Q ss_pred Cccc-hH--HHHHHHHHhCCCC------ChhhHHHHHHHHHhhhhhcccccchhhhhhhhhcccCCCccccccccccccc
Q 002667 81 NFTL-IG--RNYRNLCQILPDV------EEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALED 151 (895)
Q Consensus 81 r~dL-ih--k~yrkLc~~L~d~------dEWgQv~iL~lL~rY~r~~~~~~~ps~~f~~~~~~~~~~~e~~~~~~~~l~~ 151 (895)
-++. .| ....+++--|.|+ +-|.-.-+.+-+..-.|.. |+.+..
T Consensus 442 ~i~p~~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~a~a~~~~-----~S~l~~---------------------- 494 (858)
T COG5215 442 IISPCGHLVLEVSASLIGLMDCPFRSINCSWRKENLVDHIAKAVREV-----ESFLAK---------------------- 494 (858)
T ss_pred hcCccccccHHHHHHHhhhhccchHHhhhHHHHHhHHHhhhhhhccc-----cchhHH----------------------
Confidence 2211 11 2233444344443 6677555555444333211 111110
Q ss_pred CCCCCCccchhhhhhhhhhcccccccccccCCCcccccccccCccccCCCCChhHHHHHHhhhhhccCCCh-HHHHHHHH
Q 002667 152 NGIPSRTYDSELVNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNS-AVVLAAAG 230 (895)
Q Consensus 152 q~~~~~~~~~~~~~~~~~~~~~~~d~~~~~s~~~~~~~~~~~~~~~~~~~~d~D~~lLL~~~~pLLqS~Ns-AVVlaaa~ 230 (895)
+|. .-+.-|+..+.--+.-.|. +-.+++..
T Consensus 495 ------------------fY~-------------------------------ai~~~Lv~~t~~~~Ne~n~R~s~fsaLg 525 (858)
T COG5215 495 ------------------FYL-------------------------------AILNALVKGTELALNESNLRVSLFSALG 525 (858)
T ss_pred ------------------HHH-------------------------------HHHHHHHHHHHhhccchhHHHHHHHHHH
Confidence 000 0011222222222222232 22344444
Q ss_pred HHHhcCCHHH--------------HHHHHHHHHHHhc-----CCCcchHHHHHHHHHHHHhCCcccc---cccccceec-
Q 002667 231 VHWIMSPKED--------------VKRIVKPLLFILR-----SSGASKYVVLCNIQVFAKALPHLFV---PHYEDFFVS- 287 (895)
Q Consensus 231 l~~~lap~~~--------------l~~~~~pLv~LL~-----s~~eiqyvvL~~I~~i~~~~p~lF~---~~l~~Ffi~- 287 (895)
....++|... +...+..+-..|. +..|+|--.+..|..|++++|.-.+ ..+...|+|
T Consensus 526 tli~~~~d~V~~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~v~D~lm~Lf~r~ 605 (858)
T COG5215 526 TLILICPDAVSDILAGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIEDVEDQLMELFIRI 605 (858)
T ss_pred HHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHH
Confidence 4433343221 1111222211111 1235555556666777777765333 334444444
Q ss_pred --cCCcHHHHHHHHHHHHhhcC--CCCHHHHHHHHHHhhc----cCChhHHHHHHHHHHHHHhhCc----chHHHHHHHH
Q 002667 288 --SSDSYQSKALKLEILSSIVT--ESSISSVFKEFQDYIR----DPDRRFAADTVAAIGLCARKLP----KMANTCVEGL 355 (895)
Q Consensus 288 --~sDp~~IK~lKLeIL~~Lan--e~Nv~~IL~EL~~Yv~----~~D~ef~~~aI~AIG~~A~~~p----~~a~~cl~~L 355 (895)
..||+.+-..-+--+..|.+ ++-++.-+..|.-|+. ..|..+..-+|--+|++|..+. ..++..++.|
T Consensus 606 les~~~t~~~~dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~aln~~d~~v~~~avglvgdlantl~~df~~y~d~~ms~L 685 (858)
T COG5215 606 LESTKPTTAFGDVYTAISALSTSLEERFEQYASKFIPYLTRALNCTDRFVLNSAVGLVGDLANTLGTDFNIYADVLMSSL 685 (858)
T ss_pred HhccCCchhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 35677676666656666655 3445555555555553 2455566677888888887654 4566777778
Q ss_pred HHHHHhh
Q 002667 356 LALIRQE 362 (895)
Q Consensus 356 l~LLs~~ 362 (895)
++.|+++
T Consensus 686 vQ~lss~ 692 (858)
T COG5215 686 VQCLSSE 692 (858)
T ss_pred HHHhcCh
Confidence 8877753
No 188
>PRK15098 beta-D-glucoside glucohydrolase; Provisional
Probab=36.85 E-value=74 Score=40.38 Aligned_cols=60 Identities=18% Similarity=0.195 Sum_probs=39.8
Q ss_pred CCeEEEEEEEEeCCCCceee---eEeecccccchhhhhhhhhhhccccccCCCCCCCcccCCcccccCCCCeeEEEEEEe
Q 002667 757 PQLVCLETFFENCSSETMSE---VTLVDEESHKALDLADLTLATTASSLTSQSDLPTLVPMEEITSLEPGQTMKRILEVR 833 (895)
Q Consensus 757 ~~mv~v~l~f~N~s~~~~~~---i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~i~~l~p~~~~~~~~~i~ 833 (895)
...+.|.++++|+++-+=.+ +-+..+.. +..+- .-.++.|..| .|+||++.++.+-|+
T Consensus 666 ~~~i~v~v~V~NtG~~~G~EVvQlYv~~~~~-----~~~~P-------------~k~L~gF~Kv-~L~pGes~~V~~~l~ 726 (765)
T PRK15098 666 DGKVTASVTVTNTGKREGATVVQLYLQDVTA-----SMSRP-------------VKELKGFEKI-MLKPGETQTVSFPID 726 (765)
T ss_pred CCeEEEEEEEEECCCCCccEEEEEeccCCCC-----CCCCH-------------HHhccCceeE-eECCCCeEEEEEeec
Confidence 34688999999999754333 33433321 11100 0147889999 699999999999887
Q ss_pred cC
Q 002667 834 FH 835 (895)
Q Consensus 834 f~ 835 (895)
..
T Consensus 727 ~~ 728 (765)
T PRK15098 727 IE 728 (765)
T ss_pred HH
Confidence 54
No 189
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=36.64 E-value=67 Score=41.44 Aligned_cols=64 Identities=25% Similarity=0.315 Sum_probs=49.6
Q ss_pred HHHHhhcCCCCchhhHHHHHHHHHHhccCCcc-----hhHHHHHHHHHHhcCCChhHHHHHHHHHHHhCC
Q 002667 15 VAVGKCARDPSVFVRKCAANALPKLHELRQEE-----ITSAIEEIVGILLNDRSPGVVGAAAAAFASICP 79 (895)
Q Consensus 15 ~aIkk~l~D~SPYVRK~AA~AI~Kly~ld~pd-----~~~~L~eil~~LL~D~~p~VvgsAv~Af~EIcP 79 (895)
.++...-.|+.|..|.-+++|+.+|+.-. ++ ....-.|.|..+|.|.-|-|-+|||.||-...-
T Consensus 603 iCle~lnd~~~pLLrQW~~icLG~LW~d~-~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~ 671 (1387)
T KOG1517|consen 603 ICLEHLNDDPEPLLRQWLCICLGRLWEDY-DEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLS 671 (1387)
T ss_pred HHHHHhcCCccHHHHHHHHHHHHHHhhhc-chhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhc
Confidence 34433334468999999999999999865 44 344566788889999999999999999877653
No 190
>PF14837 INTS5_N: Integrator complex subunit 5 N-terminus
Probab=36.54 E-value=2.7e+02 Score=29.96 Aligned_cols=47 Identities=19% Similarity=0.386 Sum_probs=32.8
Q ss_pred HHHHHHHHHhhccCChhHHHHHHHHHHHHHhh----CcchHHHHHHHHHHH
Q 002667 312 SSVFKEFQDYIRDPDRRFAADTVAAIGLCARK----LPKMANTCVEGLLAL 358 (895)
Q Consensus 312 ~~IL~EL~~Yv~~~D~ef~~~aI~AIG~~A~~----~p~~a~~cl~~Ll~L 358 (895)
+.++.||+.|+++.+..+....++.+.+||.. +|..-+.+++.+-.+
T Consensus 2 q~~l~~L~~fi~~~~~~~~~~~~~~lvk~al~lL~~lPaaR~AVley~~~v 52 (213)
T PF14837_consen 2 QNLLDELKSFIRGVRPCYSNKSVEDLVKCALSLLRSLPAARDAVLEYFGLV 52 (213)
T ss_pred chHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 35789999999998876666666677777754 577666666654433
No 191
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=36.40 E-value=2.4e+02 Score=25.60 Aligned_cols=74 Identities=19% Similarity=0.238 Sum_probs=42.4
Q ss_pred EEEEEEEEeCCCCceeeeEeecccccchhhhhhhhhhhccccccCCCCCCCcccCCcccccCCCCeeEEEEEEecC--CC
Q 002667 760 VCLETFFENCSSETMSEVTLVDEESHKALDLADLTLATTASSLTSQSDLPTLVPMEEITSLEPGQTMKRILEVRFH--HH 837 (895)
Q Consensus 760 v~v~l~f~N~s~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~i~~l~p~~~~~~~~~i~f~--~~ 837 (895)
.+..|+++|.|..+. ..++...+. ..+- +.--+.=..|+||++.+. -|.|+ +.
T Consensus 22 ~~~~v~l~N~s~~p~-~f~v~~~~~--~~~~--------------------~~v~~~~g~l~PG~~~~~--~V~~~~~~~ 76 (102)
T PF14874_consen 22 YSRTVTLTNTSSIPA-RFRVRQPES--LSSF--------------------FSVEPPSGFLAPGESVEL--EVTFSPTKP 76 (102)
T ss_pred EEEEEEEEECCCCCE-EEEEEeCCc--CCCC--------------------EEEECCCCEECCCCEEEE--EEEEEeCCC
Confidence 357889999998885 444433210 0000 111112236999997655 45555 22
Q ss_pred C--ccceEEEEEcCCeeeeEeec
Q 002667 838 L--LPLKLALHCNGKKLPVKLRP 858 (895)
Q Consensus 838 ~--~~~~~~l~~~~~~~~v~~~p 858 (895)
. .-.++.+.+.++.|.|.|+.
T Consensus 77 ~g~~~~~l~i~~e~~~~~i~v~a 99 (102)
T PF14874_consen 77 LGDYEGSLVITTEGGSFEIPVKA 99 (102)
T ss_pred CceEEEEEEEEECCeEEEEEEEE
Confidence 2 23456667788888888775
No 192
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=35.32 E-value=2e+02 Score=29.11 Aligned_cols=37 Identities=19% Similarity=0.098 Sum_probs=29.5
Q ss_pred chhhhHHHHHHHHhhcCCCCchhhHHHHHHHHHHhccCCcc
Q 002667 6 LHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEE 46 (895)
Q Consensus 6 v~~I~piv~~aIkk~l~D~SPYVRK~AA~AI~Kly~ld~pd 46 (895)
-|.++++++..+|.. .++-+|+.|.-++.-|=.+| |-
T Consensus 8 yP~LL~~L~~iLk~e---~s~~iR~E~lr~lGilGALD-P~ 44 (160)
T PF11865_consen 8 YPELLDILLNILKTE---QSQSIRREALRVLGILGALD-PY 44 (160)
T ss_pred hHHHHHHHHHHHHhC---CCHHHHHHHHHHhhhccccC-cH
Confidence 467777787777776 55889999999888888888 75
No 193
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=34.95 E-value=37 Score=43.03 Aligned_cols=10 Identities=40% Similarity=0.534 Sum_probs=4.1
Q ss_pred HHHHHHHHHH
Q 002667 350 TCVEGLLALI 359 (895)
Q Consensus 350 ~cl~~Ll~LL 359 (895)
|++..++.++
T Consensus 392 wil~~ll~li 401 (784)
T PF04931_consen 392 WILDQLLSLI 401 (784)
T ss_pred HHHHHHHHHH
Confidence 3444444433
No 194
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=34.88 E-value=4.6e+02 Score=33.93 Aligned_cols=147 Identities=12% Similarity=0.235 Sum_probs=89.0
Q ss_pred CCCHHHHHHHHHHhhccCChhHHHHHHHHHHHHHhhCcch--HHHHHHHHHHHHHhhhccccccCCCCCCchhhhHHHH-
Q 002667 308 ESSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKM--ANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIIS- 384 (895)
Q Consensus 308 e~Nv~~IL~EL~~Yv~~~D~ef~~~aI~AIG~~A~~~p~~--a~~cl~~Ll~LLs~~~~~~~~~~~~~~~~vv~E~V~v- 384 (895)
.-.+-+++.++.+|..+.+...++++|+.+...+..+|.. -..=+..|+.+-... + .+...+.+++..
T Consensus 38 s~tl~dlV~sl~~yl~s~n~~~Rakai~llsqvl~~~p~d~L~k~EVs~Ll~fyq~r--------l-dd~~la~~~~l~~ 108 (1030)
T KOG1967|consen 38 STTLLDLVTSLGTYLTSDNPEERAKAIELLSQVLSEFPKDLLQKKEVSVLLQFYQNR--------L-DDSALAKEAVLGG 108 (1030)
T ss_pred cccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccHhhhhHHHHHHHHHHHHhH--------H-HHhhhhHHHHHHH
Confidence 3467789999999999999999999999999999988873 223345555543321 0 123345666655
Q ss_pred HHHHHhh--CCcchHHHHHHHHH-hhhccCchh--------hHHhhhhhhccccCCCCCccchHHHHHHH-HHHhhccCc
Q 002667 385 IKSIIKQ--DPSCHEKVIIQLFR-SLDSIKVPE--------ARVMIIWMVGEYSSVGVKIPRMLTTVLKY-LAWCFKSEA 452 (895)
Q Consensus 385 ik~Llq~--~P~~~~~ii~~L~~-~ld~i~~p~--------ArAsIiWLLGEY~~~~e~ip~ia~dvLr~-l~k~F~~E~ 452 (895)
++.++-+ -|+. -+..+++ .+++.+.+. +---+.|++-.|-. .+....+|++=. +.+.+..|.
T Consensus 109 l~aL~~~~~~p~~---~ivsllkalfq~~~vqs~aq~~R~~~~~Il~~~l~~~~~---~l~s~~~D~~~~~f~~~~~GEK 182 (1030)
T KOG1967|consen 109 LKALILMSKLPDN---FIVSLLKALFQEVQVQSLAQKERLLQYEILEWFLDYRLE---FLKSLGPDFLFTAFCKVVDGEK 182 (1030)
T ss_pred HHHHHHhhcCCch---HHHHHHHHHHHhcchHHHHHHHHhhHHHHHHHHHHHHHH---HHhcccchHHHHHHHHHhcCCC
Confidence 6666543 3443 2333333 233333321 11233477776642 122224566555 777888887
Q ss_pred HHHHHHHHHHHHHHhhh
Q 002667 453 VETKLQILNTTIKVLLC 469 (895)
Q Consensus 453 ~~VKlqILtaaaKL~~~ 469 (895)
+.==+.+.-.++|....
T Consensus 183 DPRnLml~F~l~~~i~s 199 (1030)
T KOG1967|consen 183 DPRNLMLVFSLVKEISS 199 (1030)
T ss_pred CchhhHHHHHHHHHHhh
Confidence 76667777777776655
No 195
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.53 E-value=1.3e+02 Score=33.96 Aligned_cols=65 Identities=28% Similarity=0.266 Sum_probs=43.9
Q ss_pred HHHHHhhcCCCCchhhHHHHHHHHHHhccC-C--cchhHHHHHHHHHHhcCCChhHHHHHHHHHHHhCCC
Q 002667 14 LVAVGKCARDPSVFVRKCAANALPKLHELR-Q--EEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPN 80 (895)
Q Consensus 14 ~~aIkk~l~D~SPYVRK~AA~AI~Kly~ld-~--pd~~~~L~eil~~LL~D~~p~VvgsAv~Af~EIcP~ 80 (895)
...|-+.+.+.+|-|||.|+.-+.-+-.-. + -.....+++.+.+|+.|..+ +.-|+.|+..+..+
T Consensus 5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~ 72 (353)
T KOG2973|consen 5 LVELVELLHSLSPPVRKAAVEHLLGLTGRGLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQK 72 (353)
T ss_pred HHHHHHHhccCChHHHHHHHHHHhhccccchhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhh
Confidence 456778899999999999985544332110 0 00234567777889999998 66777777777654
No 196
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=34.31 E-value=5.5e+02 Score=27.11 Aligned_cols=32 Identities=13% Similarity=0.065 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHhcCCCcchHHHHHHHHHHH
Q 002667 239 EDVKRIVKPLLFILRSSGASKYVVLCNIQVFA 270 (895)
Q Consensus 239 ~~l~~~~~pLv~LL~s~~eiqyvvL~~I~~i~ 270 (895)
+.++.+++-|..+|++.+++|-.+.+.+..++
T Consensus 167 ~~F~~~a~~L~~~L~~~~~LR~~Ic~aL~~Lv 198 (198)
T PF08161_consen 167 ESFPSFAKLLGNALYDQPDLRPIICQALRRLV 198 (198)
T ss_pred HHHHHHHHHHHHHHhcCcchHHHHHHHHHHHC
Confidence 45778889999999999999999999887763
No 197
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=33.82 E-value=1.8e+02 Score=31.33 Aligned_cols=65 Identities=14% Similarity=0.129 Sum_probs=46.7
Q ss_pred HHHHHHHHHhccCCcchhHHHHHHHHHHh-cCCChhHHHHHHHHHHHhCCCCccchHHHHHHHHHhC
Q 002667 31 CAANALPKLHELRQEEITSAIEEIVGILL-NDRSPGVVGAAAAAFASICPNNFTLIGRNYRNLCQIL 96 (895)
Q Consensus 31 ~AA~AI~Kly~ld~pd~~~~L~eil~~LL-~D~~p~VvgsAv~Af~EIcP~r~dLihk~yrkLc~~L 96 (895)
..|.++.-+...+ |+.-.+++..|..+| .+.++.+.+.|+-++..+|+..+-=+-+..+-|-..|
T Consensus 103 ~~a~s~~~ic~~~-p~~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~vvd~~s~w~vl~~~l 168 (234)
T PF12530_consen 103 SIAASIRDICCSR-PDHGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAEVVDFYSAWKVLQKKL 168 (234)
T ss_pred HHHHHHHHHHHhC-hhhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhc
Confidence 3345555556667 888888999999999 7889999999999999999765332334444444444
No 198
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=33.79 E-value=68 Score=25.25 Aligned_cols=38 Identities=29% Similarity=0.262 Sum_probs=28.9
Q ss_pred HHHHHhccCCcc--hhHHHHHHHHHHhcCCChhHHHHHHHH
Q 002667 35 ALPKLHELRQEE--ITSAIEEIVGILLNDRSPGVVGAAAAA 73 (895)
Q Consensus 35 AI~Kly~ld~pd--~~~~L~eil~~LL~D~~p~VvgsAv~A 73 (895)
||..+-..| |. ..+.+.+.+..-|.|.+|.|--+|+-+
T Consensus 2 ~l~~iv~~d-p~ll~~~~v~~~i~~rl~D~s~~VR~aav~l 41 (42)
T PF12765_consen 2 ALSSIVEKD-PTLLDSSDVQSAIIRRLSDSSPSVREAAVDL 41 (42)
T ss_pred hHHHHHhcC-ccccchHHHHHHHHHHhcCCChHHHHHHHHH
Confidence 355556667 76 455788888889999999998888754
No 199
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=33.00 E-value=7.2e+02 Score=31.40 Aligned_cols=167 Identities=13% Similarity=0.112 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHhhcCCCCH----HHHHHHHHHhhc-cCChhHHHHHHHHHHHHHhhCcchHHHHHHHHHHHHHhhhcccc
Q 002667 293 QSKALKLEILSSIVTESSI----SSVFKEFQDYIR-DPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSD 367 (895)
Q Consensus 293 ~IK~lKLeIL~~Lane~Nv----~~IL~EL~~Yv~-~~D~ef~~~aI~AIG~~A~~~p~~a~~cl~~Ll~LLs~~~~~~~ 367 (895)
++.-...|++-.+..+-|. +.|+++|..-.- ..|..=-++.-.-+-++....|...-+-++.+..||..+.
T Consensus 237 hls~~~aeli~~isde~n~~~l~edi~~~l~~l~fn~~d~~Gpk~islFl~kls~l~p~i~lrq~~~~~~LLdses---- 312 (1128)
T COG5098 237 HLSGLIAELIPSISDELNRCALKEDIPVLLKNLSFNLPDLSGPKDISLFLNKLSELSPGIMLRQYEHFDELLDSES---- 312 (1128)
T ss_pred HHHHHHHHHHHHhHHHhhhhhhhcccHHHHhhceeecccccChHHHHHHHHHHhhcCchHHHHHHHHHHHHhcccc----
Confidence 4555666777776666664 346666665332 1221111122223345667778777777788888886432
Q ss_pred ccCCCCCCchhhhHHHH-HHHHHh---hCCcc---hHHHHHHHHHhhh-cc--CchhhHHhhhhhhccccCCCCCccchH
Q 002667 368 IESGNGEADVLIQSIIS-IKSIIK---QDPSC---HEKVIIQLFRSLD-SI--KVPEARVMIIWMVGEYSSVGVKIPRML 437 (895)
Q Consensus 368 ~~~~~~~~~vv~E~V~v-ik~Llq---~~P~~---~~~ii~~L~~~ld-~i--~~p~ArAsIiWLLGEY~~~~e~ip~ia 437 (895)
..+.-+++- ..+++. ++|+- +...+.-|+..+. .+ ..|-.|...+-.+-.-++...+.|.--
T Consensus 313 --------~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~~~~r 384 (1128)
T COG5098 313 --------FTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKTVGRR 384 (1128)
T ss_pred --------hhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCcccccchH
Confidence 223333332 223332 23321 2223333443332 22 247777776766666665433445455
Q ss_pred HHHHHHHHHhhccCcHHHHHHHHHHHHHHhhhcC
Q 002667 438 TTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAK 471 (895)
Q Consensus 438 ~dvLr~l~k~F~~E~~~VKlqILtaaaKL~~~~p 471 (895)
.++.|....+..+-+..||--.+.++.||+.+.|
T Consensus 385 ~ev~~lv~r~lqDrss~VRrnaikl~SkLL~~HP 418 (1128)
T COG5098 385 HEVIRLVGRRLQDRSSVVRRNAIKLCSKLLMRHP 418 (1128)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCC
Confidence 6777877888888899999999999999999988
No 200
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=32.95 E-value=1.3e+02 Score=31.74 Aligned_cols=62 Identities=18% Similarity=0.083 Sum_probs=45.2
Q ss_pred HHHHHhhcCCCCchhhHHHHHHHHHHhccCCcchhHHHHHHHHHHhcCCChhHHHHHHHHHHHhC
Q 002667 14 LVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASIC 78 (895)
Q Consensus 14 ~~aIkk~l~D~SPYVRK~AA~AI~Kly~ld~pd~~~~L~eil~~LL~D~~p~VvgsAv~Af~EIc 78 (895)
...+.+-+.|.+.++||+|+.+-.+.-+- .+.+.+.+++..++.|+.-.|-=+.-=+|.|+.
T Consensus 117 ~~~l~~W~~s~~~W~rR~ai~~~l~~~~~---~~~~~l~~~~~~~~~d~e~fI~KAiGW~LRe~~ 178 (208)
T cd07064 117 EPVMDEWSTDENFWLRRTAILHQLKYKEK---TDTDLLFEIILANLGSKEFFIRKAIGWALREYS 178 (208)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHHHHc---cCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHh
Confidence 46688899999999999999875552221 235667778888888888777655555677765
No 201
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=31.49 E-value=4.7e+02 Score=30.14 Aligned_cols=32 Identities=9% Similarity=0.157 Sum_probs=15.1
Q ss_pred cchHHHHHHHHHHhhccCcHHHHHHHHHHHHHHhhh
Q 002667 434 PRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLC 469 (895)
Q Consensus 434 p~ia~dvLr~l~k~F~~E~~~VKlqILtaaaKL~~~ 469 (895)
..+.++++..+.. ....+|.+++.+...+-..
T Consensus 174 ~~W~~~l~~~l~~----~~k~ir~~a~~l~~~~~~~ 205 (372)
T PF12231_consen 174 DIWFPILFPDLLS----SAKDIRTKAISLLLEAKKC 205 (372)
T ss_pred HHHHHHHHHHHhh----cchHHHHHHHHHHHHHHHH
Confidence 3355555555543 2344555455554444333
No 202
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=30.62 E-value=2.8e+02 Score=34.38 Aligned_cols=40 Identities=15% Similarity=0.213 Sum_probs=23.5
Q ss_pred HHHHHHHHhcC-CCcchHHHHHHHHHHHHhCCcccccccccceecc
Q 002667 244 IVKPLLFILRS-SGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSS 288 (895)
Q Consensus 244 ~~~pLv~LL~s-~~eiqyvvL~~I~~i~~~~p~lF~~~l~~Ffi~~ 288 (895)
++.||+.+|.. ..-|+-.+|..|.-++..+. .++.+|+++
T Consensus 420 v~~plvqll~dp~~~i~~~~lgai~NlVmefs-----~~kskfl~~ 460 (678)
T KOG1293|consen 420 VAQPLVQLLMDPEIMIMGITLGAICNLVMEFS-----NLKSKFLRN 460 (678)
T ss_pred hHHHHHHHhhCcchhHHHHHHHHHHHHHhhcc-----cHHHHHHHc
Confidence 55677777643 23466777777776666554 235555444
No 203
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=30.35 E-value=62 Score=35.41 Aligned_cols=10 Identities=10% Similarity=-0.130 Sum_probs=4.0
Q ss_pred cHHHHhhccC
Q 002667 559 SLSQIVLHAA 568 (895)
Q Consensus 559 SLS~~~~~~~ 568 (895)
+=+|-++...
T Consensus 229 tR~hkyGRQ~ 238 (314)
T PF06524_consen 229 TRSHKYGRQG 238 (314)
T ss_pred eecchhcccc
Confidence 3334444433
No 204
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=30.29 E-value=3.6e+02 Score=32.00 Aligned_cols=67 Identities=19% Similarity=0.234 Sum_probs=37.5
Q ss_pred HHHHHHHHHhcC--CCcchHHHHHHHHHHHHhCCc---ccccc-------ccccee-ccCCcHHHHHHHHHHHHhhcCCC
Q 002667 243 RIVKPLLFILRS--SGASKYVVLCNIQVFAKALPH---LFVPH-------YEDFFV-SSSDSYQSKALKLEILSSIVTES 309 (895)
Q Consensus 243 ~~~~pLv~LL~s--~~eiqyvvL~~I~~i~~~~p~---lF~~~-------l~~Ffi-~~sDp~~IK~lKLeIL~~Lane~ 309 (895)
..++.++.||+. ..++.--+|..|..|+...|. +|..+ +..|+- ..++..+|..+...+|+.|+...
T Consensus 53 ~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~ 132 (429)
T cd00256 53 QYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACFG 132 (429)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhcC
Confidence 445555556643 233333346666666665553 33322 233332 23566789999999999997543
No 205
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=30.29 E-value=84 Score=32.73 Aligned_cols=58 Identities=21% Similarity=0.197 Sum_probs=37.9
Q ss_pred CeEEEEEEEEeCCCCceeeeEeecccccchh-hhhhhhhhhccccccCCCCCCCcccCCcccccCCCCeeEEEEEEe
Q 002667 758 QLVCLETFFENCSSETMSEVTLVDEESHKAL-DLADLTLATTASSLTSQSDLPTLVPMEEITSLEPGQTMKRILEVR 833 (895)
Q Consensus 758 ~mv~v~l~f~N~s~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~f~~i~~l~p~~~~~~~~~i~ 833 (895)
.=+.|++++-|.++.+..||.|.|.. .| ++.+ +-+ ...--.+++|+||++++-..-|.
T Consensus 38 ~~v~V~~~iyN~G~~~A~dV~l~D~~---fp~~~F~---------lvs------G~~s~~~~~i~pg~~vsh~~vv~ 96 (181)
T PF05753_consen 38 EDVTVTYTIYNVGSSAAYDVKLTDDS---FPPEDFE---------LVS------GSLSASWERIPPGENVSHSYVVR 96 (181)
T ss_pred cEEEEEEEEEECCCCeEEEEEEECCC---CCccccE---------ecc------CceEEEEEEECCCCeEEEEEEEe
Confidence 34568889999999999999999842 22 2211 000 11112467999999887765554
No 206
>PF05327 RRN3: RNA polymerase I specific transcription initiation factor RRN3; InterPro: IPR007991 This family consists of several eukaryotic proteins which are homologous to the Saccharomyces cerevisiae RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in the S. cerevisiae [] RNA polymerase I complex within the nucleolus. In mammalian cells, the phosphorylation state of Rrn3 regulates rDNA transcription by determining the steady-state concentration of the Rrn3 [].; PDB: 3TJ1_B.
Probab=30.14 E-value=6.6e+02 Score=30.79 Aligned_cols=131 Identities=10% Similarity=0.128 Sum_probs=77.2
Q ss_pred HHHHHHHHHHhh-ccCChhHHHHHHHHHHHHHhhCcchHHHHHHHHHHHHHhhhccc----cccCCCCCCchhhhHHHHH
Q 002667 311 ISSVFKEFQDYI-RDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTS----DIESGNGEADVLIQSIISI 385 (895)
Q Consensus 311 v~~IL~EL~~Yv-~~~D~ef~~~aI~AIG~~A~~~p~~a~~cl~~Ll~LLs~~~~~~----~~~~~~~~~~vv~E~V~vi 385 (895)
...+++-+..+- ...+.+++.+-++=++.++...+.+...|++-|++.+.-..... +...... ..+....-..|
T Consensus 71 ~~~LV~ail~~~W~~~~~~~v~~y~~Fl~~Lvsa~~~yl~~vl~~LV~~f~p~~~~~~~~~~~~~~~~-~~~~~~vH~~L 149 (563)
T PF05327_consen 71 CKQLVEAILSLNWLGRDEDFVEAYIQFLINLVSAQPKYLSPVLSMLVKNFIPPPSSIAEWPGCPPEKR-REIYERVHDAL 149 (563)
T ss_dssp CHHHHHHHHT-TGGGS-HHHHHHHHHHHHHHHHH-GGGHHHHHHHHHHGGGS-HHHHHH----------------HHHHH
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccCCCccccccchhhhhhh-hhhHHHHHHHH
Confidence 888888887762 14677899999999999999999999999999998765211000 0000000 01111233478
Q ss_pred HHHHhhCCcchHHHHHHHHHhhhccCchhhH-----HhhhhhhccccCCCCCccchHHHHHHHHHHhhc
Q 002667 386 KSIIKQDPSCHEKVIIQLFRSLDSIKVPEAR-----VMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFK 449 (895)
Q Consensus 386 k~Llq~~P~~~~~ii~~L~~~ld~i~~p~Ar-----AsIiWLLGEY~~~~e~ip~ia~dvLr~l~k~F~ 449 (895)
+.|++..|.....+...|.+.+.....+... ..++|+. +|+ |.+..++|..++++..
T Consensus 150 ~~Il~lvP~s~~~L~~~l~~~FP~~~~~~~~~~~Yv~NlL~l~-~Y~------P~L~~~Il~lIi~rLi 211 (563)
T PF05327_consen 150 QKILRLVPTSPSFLIPILVQNFPHKRKSKDEHVNYVRNLLRLT-EYC------PELRSDILSLIIERLI 211 (563)
T ss_dssp HHHHHH-GGGHHHHHHHHHHTS--TTS-HHHHHHHHHHHHHHH-CC-------GGGHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHcCcCCCCChHHHHHHHHHHHHHH-cch------HHHHHHHHHHHHHHHH
Confidence 8999999999888888888888766554321 1334544 454 4455666666665543
No 207
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=29.73 E-value=1.5e+02 Score=36.43 Aligned_cols=110 Identities=15% Similarity=0.192 Sum_probs=68.6
Q ss_pred HHhhCCcchHHHHHHHHHhh--hccCchhhHHhhhhhhccc--cCCCCCccchH--HHHHHHHHHhhccCcHHHHHHHHH
Q 002667 388 IIKQDPSCHEKVIIQLFRSL--DSIKVPEARVMIIWMVGEY--SSVGVKIPRML--TTVLKYLAWCFKSEAVETKLQILN 461 (895)
Q Consensus 388 Llq~~P~~~~~ii~~L~~~l--d~i~~p~ArAsIiWLLGEY--~~~~e~ip~ia--~dvLr~l~k~F~~E~~~VKlqILt 461 (895)
|.+.+|......+..+|+.+ ..+.+-.+...+.-+...| +. .+|.+. --.+|+..+...+-+..||++.+.
T Consensus 260 l~~ln~sl~~d~i~dicdsvfvsRy~Dv~d~IRv~c~~~L~dwi~---lvP~yf~k~~~lry~GW~LSDn~~~vRl~v~K 336 (740)
T COG5537 260 LYDLNPSLIRDEIKDICDSVFVSRYIDVDDVIRVLCSMSLRDWIG---LVPDYFRKILGLRYNGWSLSDNHEGVRLLVSK 336 (740)
T ss_pred HHhhcchHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHh---cchHHHHhhhcccccccccccchHHHHHHHHH
Confidence 34556766666677776633 3333333333333333332 22 222221 113556666777788899999999
Q ss_pred HHHHHhhhcCCCCh--HHHHHHHHHHHHHHccCCChHHHhHH
Q 002667 462 TTIKVLLCAKGGDM--WTITRLFSYLLELAECDLNYDVRDRA 501 (895)
Q Consensus 462 aaaKL~~~~p~e~~--~~l~~L~qyvL~la~~D~n~DVRDRA 501 (895)
..-+|+.+.|..+. +.+.++-..+|+.+++|.|. ||--+
T Consensus 337 il~~L~s~~p~~d~ir~f~eRFk~rILE~~r~D~d~-VRi~s 377 (740)
T COG5537 337 ILLFLCSRIPHTDAIRRFVERFKDRILEFLRTDSDC-VRICS 377 (740)
T ss_pred HHHHHHhcCCcchHHHHHHHHHHHHHHHHHhhccch-hhHHH
Confidence 99999999997551 23556677899999999988 87644
No 208
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=29.19 E-value=54 Score=35.87 Aligned_cols=7 Identities=29% Similarity=0.339 Sum_probs=3.1
Q ss_pred CCcHHHH
Q 002667 557 PGSLSQI 563 (895)
Q Consensus 557 lGSLS~~ 563 (895)
+|.-|-+
T Consensus 180 lGq~sCL 186 (314)
T PF06524_consen 180 LGQYSCL 186 (314)
T ss_pred ccchhhh
Confidence 4444433
No 209
>PF14837 INTS5_N: Integrator complex subunit 5 N-terminus
Probab=28.96 E-value=1.6e+02 Score=31.56 Aligned_cols=86 Identities=21% Similarity=0.279 Sum_probs=51.5
Q ss_pred hhHHHHHHhhhhhccCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhCCccccccccc
Q 002667 204 DDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSPKEDVKRIVKPLLFILRSSGASKYVVLCNIQVFAKALPHLFVPHYED 283 (895)
Q Consensus 204 ~D~~lLL~~~~pLLqS~NsAVVlaaa~l~~~lap~~~l~~~~~pLv~LL~s~~eiqyvvL~~I~~i~~~~p~lF~~~l~~ 283 (895)
.|++-|++.+.|...+. ..+..+++-+.||++=|-.|..||.++..+ |...++.
T Consensus 6 ~~L~~fi~~~~~~~~~~-------------------~~~~lvk~al~lL~~lPaaR~AVley~~~v-------f~eaV~~ 59 (213)
T PF14837_consen 6 DELKSFIRGVRPCYSNK-------------------SVEDLVKCALSLLRSLPAARDAVLEYFGLV-------FDEAVHL 59 (213)
T ss_pred HHHHHHHhcCCcccccc-------------------cHHHHHHHHHHHHHhCcccHHHHHHHHHHH-------HHHHHHH
Confidence 35666666666654333 233667888899999899999999988654 4444443
Q ss_pred ceeccC-CcHHHHHHHHHHHHhhcCCCCHHHHHHHHHHhhc
Q 002667 284 FFVSSS-DSYQSKALKLEILSSIVTESSISSVFKEFQDYIR 323 (895)
Q Consensus 284 Ffi~~s-Dp~~IK~lKLeIL~~Lane~Nv~~IL~EL~~Yv~ 323 (895)
++-.-. +.. --..-.+..+.+.++.|+..+..
T Consensus 60 ~~~~~E~~~~--------~~~~~~~~~~~~~ai~ei~~~L~ 92 (213)
T PF14837_consen 60 YLSPKENDAQ--------NNKQQQDEADLDEAIQEIHDVLS 92 (213)
T ss_pred HHHHHhhhhc--------ccccCCCCccHHHHHHHHHHHHH
Confidence 331111 100 11222446677888888877654
No 210
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=28.67 E-value=1.2e+02 Score=29.54 Aligned_cols=70 Identities=16% Similarity=0.338 Sum_probs=42.2
Q ss_pred HHHHHHHHHhh-ccCChhHHHHHHHHHHHHHhhCcchHHH-----HHHHHHHHHHhhhccccccCCCCCCchhhhHHHHH
Q 002667 312 SSVFKEFQDYI-RDPDRRFAADTVAAIGLCARKLPKMANT-----CVEGLLALIRQELLTSDIESGNGEADVLIQSIISI 385 (895)
Q Consensus 312 ~~IL~EL~~Yv-~~~D~ef~~~aI~AIG~~A~~~p~~a~~-----cl~~Ll~LLs~~~~~~~~~~~~~~~~vv~E~V~vi 385 (895)
-.+++.|..++ .+.|....+-|..-||.++..+|.-... +=..++.||+. .+..|-.||+..+
T Consensus 42 ~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h-----------~d~eVr~eAL~av 110 (119)
T PF11698_consen 42 FELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNH-----------EDPEVRYEALLAV 110 (119)
T ss_dssp GHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS------------SSHHHHHHHHHHH
T ss_pred cHHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcC-----------CCHHHHHHHHHHH
Confidence 34555566666 3335556666677777777777764332 23445666652 3455788898888
Q ss_pred HHHHhhC
Q 002667 386 KSIIKQD 392 (895)
Q Consensus 386 k~Llq~~ 392 (895)
+.|+.++
T Consensus 111 Qklm~~~ 117 (119)
T PF11698_consen 111 QKLMVNN 117 (119)
T ss_dssp HHHHHHS
T ss_pred HHHHHhc
Confidence 8887654
No 211
>PF01345 DUF11: Domain of unknown function DUF11; InterPro: IPR001434 This group of sequences is represented by a conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis (Streptococcus faecalis), and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydia trachomatis outer membrane proteins. In C. trachomatis, three cysteine-rich proteins (also believed to be lipoproteins), MOMP, OMP6 and OMP3, make up the extracellular matrix of the outer membrane []. They are involved in the essential structural integrity of both the elementary body (EB) and recticulate body (RB) phase. They are thought to be involved in porin formation and, as these bacteria lack the peptidoglycan layer common to most Gram-negative microbes, such proteins are highly important in the pathogenicity of the organism.; GO: 0005727 extrachromosomal circular DNA
Probab=28.56 E-value=64 Score=28.07 Aligned_cols=30 Identities=13% Similarity=0.068 Sum_probs=25.9
Q ss_pred CeEEEEEEEEeCCCCceeeeEeecccccchhhhh
Q 002667 758 QLVCLETFFENCSSETMSEVTLVDEESHKALDLA 791 (895)
Q Consensus 758 ~mv~v~l~f~N~s~~~~~~i~~~~~~~~~~~~~~ 791 (895)
.-+...|+++|.+..+..+|.|.+. +|+|+
T Consensus 41 d~v~ytitvtN~G~~~a~nv~v~D~----lp~g~ 70 (76)
T PF01345_consen 41 DTVTYTITVTNTGPAPATNVVVTDT----LPAGL 70 (76)
T ss_pred CEEEEEEEEEECCCCeeEeEEEEEc----CCCCC
Confidence 4566789999999999999999985 68886
No 212
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=28.14 E-value=4.6e+02 Score=28.84 Aligned_cols=62 Identities=15% Similarity=0.084 Sum_probs=35.2
Q ss_pred HHHHHHHHhcCC-CcchHHHHHHHHHHHHhCCcccccccccceeccCCcHHHHHHHHHHHHhhcCCCCH
Q 002667 244 IVKPLLFILRSS-GASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKLEILSSIVTESSI 311 (895)
Q Consensus 244 ~~~pLv~LL~s~-~eiqyvvL~~I~~i~~~~p~lF~~~l~~Ffi~~sDp~~IK~lKLeIL~~Lane~Nv 311 (895)
..+=|.|.|+.. ++.+ -|-+.+.. -++++.++--..+.+.+...|-...|++|+.|+.+-.+
T Consensus 14 ~LkdL~r~lr~dd~~~~-~v~r~lg~-----~~iv~~DLiPiL~~~~~~~~l~~~~l~LLV~LT~P~~~ 76 (266)
T PF04821_consen 14 CLKDLKRFLRRDDEDQR-DVRRQLGE-----WNIVQKDLIPILISYKDDDKLFLACLRLLVNLTWPIEL 76 (266)
T ss_pred HHHHHHHHHHHhCcchH-HHHHHHHH-----hchhhhhHHHHHHhccCchHHHHHHHHHHHHhCCCHHH
Confidence 345567777653 3333 22222222 24555555445555555556888889999998875443
No 213
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.51 E-value=4.7e+02 Score=33.59 Aligned_cols=147 Identities=15% Similarity=0.217 Sum_probs=84.2
Q ss_pred hhhhhccCCChHHHHHHHHHHHhcCC------HHHHHHHHHHHHHHhcCCCcchHHHHHHHH---HHHHhCCcccccccc
Q 002667 212 CTSPLLWSHNSAVVLAAAGVHWIMSP------KEDVKRIVKPLLFILRSSGASKYVVLCNIQ---VFAKALPHLFVPHYE 282 (895)
Q Consensus 212 ~~~pLLqS~NsAVVlaaa~l~~~lap------~~~l~~~~~pLv~LL~s~~eiqyvvL~~I~---~i~~~~p~lF~~~l~ 282 (895)
.....++..-+++--++.+..-|+.- ...-.++....+..|.. +-.||-|..|. .+|..+|+-.-|.+.
T Consensus 731 eai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~Lkd--edsyvyLnaI~gv~~Lcevy~e~il~dL~ 808 (982)
T KOG4653|consen 731 EAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKD--EDSYVYLNAIRGVVSLCEVYPEDILPDLS 808 (982)
T ss_pred HHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcc--cCceeeHHHHHHHHHHHHhcchhhHHHHH
Confidence 33344455555554444444444421 12234455555555543 34566677766 888889987777777
Q ss_pred cceeccCCcH--HHHHHHHHHHHhhcCCCC------HHHHHHHHHHhhccCChhHHHHHHHHHHHHHhhCc----chHHH
Q 002667 283 DFFVSSSDSY--QSKALKLEILSSIVTESS------ISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLP----KMANT 350 (895)
Q Consensus 283 ~Ffi~~sDp~--~IK~lKLeIL~~Lane~N------v~~IL~EL~~Yv~~~D~ef~~~aI~AIG~~A~~~p----~~a~~ 350 (895)
.||-..++-. .-+.+-=|.+.+++-..+ ...|+.-+..=++++|-.++.-+...+|.|.+... .+.-.
T Consensus 809 e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~~e 888 (982)
T KOG4653|consen 809 EEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFFHE 888 (982)
T ss_pred HHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHHHH
Confidence 7876554421 222222356665554433 23566666666778888899999999999887654 33334
Q ss_pred HHHHHHHHHH
Q 002667 351 CVEGLLALIR 360 (895)
Q Consensus 351 cl~~Ll~LLs 360 (895)
|+..++.+.+
T Consensus 889 v~~~Il~l~~ 898 (982)
T KOG4653|consen 889 VLQLILSLET 898 (982)
T ss_pred HHHHHHHHHc
Confidence 4444444433
No 214
>KOG1684 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=27.40 E-value=1.3e+02 Score=34.65 Aligned_cols=65 Identities=22% Similarity=0.417 Sum_probs=46.4
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCHHHHHHHHHHhhccCC-hhHHHHHHHHHHHHHhhCcchHHHHHHHHHHHHH
Q 002667 289 SDSYQSKALKLEILSSIVTESSISSVFKEFQDYIRDPD-RRFAADTVAAIGLCARKLPKMANTCVEGLLALIR 360 (895)
Q Consensus 289 sDp~~IK~lKLeIL~~Lane~Nv~~IL~EL~~Yv~~~D-~ef~~~aI~AIG~~A~~~p~~a~~cl~~Ll~LLs 360 (895)
.|+.+....+++++-.--..+.|+.|+++|++|-.+.+ .+++.++++.|.. ..| ..|.+-+++++
T Consensus 256 ~~~~~~~~~~~~~i~~~Fs~~tVeeIie~lk~~q~~~~~~ewak~tlk~L~k---~SP----tSLkvT~r~i~ 321 (401)
T KOG1684|consen 256 KDESFSLSLKLDVINKCFSANTVEEIIEALKNYQQSADGSEWAKETLKTLKK---MSP----TSLKVTLRQIR 321 (401)
T ss_pred CCccccchhhHHHHHHhhccccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh---cCC----chHHHHHHHHH
Confidence 34555666799999998899999999999999975433 4788888887754 223 33444555554
No 215
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=27.32 E-value=8.6e+02 Score=26.74 Aligned_cols=101 Identities=10% Similarity=0.189 Sum_probs=57.7
Q ss_pred HHHHHHhcC--CCcchHHHHHHHHHHHHhCC---------cccccccc-cceeccCCcHHH--HHHHHHHHHhhcC-CCC
Q 002667 246 KPLLFILRS--SGASKYVVLCNIQVFAKALP---------HLFVPHYE-DFFVSSSDSYQS--KALKLEILSSIVT-ESS 310 (895)
Q Consensus 246 ~pLv~LL~s--~~eiqyvvL~~I~~i~~~~p---------~lF~~~l~-~Ffi~~sDp~~I--K~lKLeIL~~Lan-e~N 310 (895)
..++.++.+ +|.---++.+-+..+....+ +.+.-|+- .|--..+||.-| ..+|..+...|+. +.=
T Consensus 126 ~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~f 205 (262)
T PF14500_consen 126 YGFIQLIDGEKDPRNLLLSFKLLKVILQEFDISEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLF 205 (262)
T ss_pred HHHHHHhccCCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhh
Confidence 344445543 34333344444444444443 12223432 333445788433 4566677777765 333
Q ss_pred HHHHHHHHHHhhccCChhHHHHHHHHHHHHHhhCcc
Q 002667 311 ISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPK 346 (895)
Q Consensus 311 v~~IL~EL~~Yv~~~D~ef~~~aI~AIG~~A~~~p~ 346 (895)
.+..+.=|.+=+.+.....+.++.+++..|+.+|+.
T Consensus 206 a~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~y~~ 241 (262)
T PF14500_consen 206 APFAFPLLLEKLDSTSPSVKLDSLQTLKACIENYGA 241 (262)
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHCCH
Confidence 345555555555566667889999999999999975
No 216
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.07 E-value=9.2e+02 Score=30.94 Aligned_cols=128 Identities=17% Similarity=0.266 Sum_probs=73.4
Q ss_pred HHHHHHHHhc---CCCcchHHHHHHHHHHHHhCCcccccccccceeccCCcHHHHHHHHHHHHhh-cCCCCHHHHHHHHH
Q 002667 244 IVKPLLFILR---SSGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKLEILSSI-VTESSISSVFKEFQ 319 (895)
Q Consensus 244 ~~~pLv~LL~---s~~eiqyvvL~~I~~i~~~~p~lF~~~l~~Ffi~~sDp~~IK~lKLeIL~~L-ane~Nv~~IL~EL~ 319 (895)
-.+||+.-|. .++|+--++|..+..+....- .|. -..|++..-.+-+.|--.+ -+++||.-++.=+.
T Consensus 62 Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd---~~~------v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e 132 (970)
T KOG0946|consen 62 GMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDD---SPE------VMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLE 132 (970)
T ss_pred ccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCc---chh------hcccchhhhHHHHHHHHHHHcCchhHHHHHHHHH
Confidence 3478887774 368887788998877765432 000 0123333333333333222 36788888776554
Q ss_pred HhhccCChhHHHHHHHHHHHHHhhCcchHHHH-------HHHHHHHHHhhhccccccCCCCCCchhhhHHHHHHHHHhhC
Q 002667 320 DYIRDPDRRFAADTVAAIGLCARKLPKMANTC-------VEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQD 392 (895)
Q Consensus 320 ~Yv~~~D~ef~~~aI~AIG~~A~~~p~~a~~c-------l~~Ll~LLs~~~~~~~~~~~~~~~~vv~E~V~vik~Llq~~ 392 (895)
+| |..++..+|+-|..+-..-|.-...| +..|+.+|.. ..+.+-.++|.-|+.+++-+
T Consensus 133 ~~----DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~D-----------srE~IRNe~iLlL~eL~k~n 197 (970)
T KOG0946|consen 133 EF----DFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRD-----------SREPIRNEAILLLSELVKDN 197 (970)
T ss_pred hh----chhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhh-----------hhhhhchhHHHHHHHHHccC
Confidence 44 77778888887766655545444333 4566777752 22334455666677776666
Q ss_pred Ccc
Q 002667 393 PSC 395 (895)
Q Consensus 393 P~~ 395 (895)
+..
T Consensus 198 ~~I 200 (970)
T KOG0946|consen 198 SSI 200 (970)
T ss_pred chH
Confidence 653
No 217
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.93 E-value=67 Score=37.84 Aligned_cols=34 Identities=15% Similarity=0.197 Sum_probs=15.0
Q ss_pred eeeccccccccCccccccc--ccCCCCeeEEEEecC
Q 002667 717 ISIGNIGRQVKAKSYTLLD--PANGNGLKVYYSFSS 750 (895)
Q Consensus 717 ~~~~~~~~~~~~~~~~LL~--~~~g~GL~v~Y~f~r 750 (895)
+-|+...++++.-++.++. -.-|+|+.+..++--
T Consensus 277 i~ig~~vy~ap~~tq~I~~~klkq~kGsDASn~~De 312 (483)
T KOG2236|consen 277 ICIGEKVYYAPDFTQEIFTEKLKQGKGSDASNRYDE 312 (483)
T ss_pred cccCCeeEecCcchhhhcchhhhhcccccccccccc
Confidence 3344444445433333322 235555555555543
No 218
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=26.90 E-value=72 Score=40.29 Aligned_cols=83 Identities=13% Similarity=0.122 Sum_probs=0.0
Q ss_pred chhhhHHHHHHHHhhcCCCCchhhHHHHHHHHHHhccCCcchhHHHHH------HHHHHhcCCChhHHHHHHHHHHHhCC
Q 002667 6 LHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEE------IVGILLNDRSPGVVGAAAAAFASICP 79 (895)
Q Consensus 6 v~~I~piv~~aIkk~l~D~SPYVRK~AA~AI~Kly~ld~pd~~~~L~e------il~~LL~D~~p~VvgsAv~Af~EIcP 79 (895)
+..++|+++.-.-.++ +||||.....||.|+-....++....++. .+.-+|.-+++.|+..|+...+=+|.
T Consensus 553 ~~~llpVLveVYsSsA---~~~VR~kcL~Ailrlvy~s~seli~slLk~~~vSS~lAG~lsskD~~vlVgALQvAEiLme 629 (1051)
T KOG0168|consen 553 GKDLLPVLVEVYSSSA---NPDVRYKCLSAILRLVYFSNSELIGSLLKNTNVSSHLAGMLSSKDLTVLVGALQVAEILME 629 (1051)
T ss_pred HHHHHHHHHHHHhccC---CchhhHHHHHHHHHHHhhCCHHHHHHHHhcchHHHHHHhhhhcCCCeeEeehHHHHHHHHH
Q ss_pred CCccchHHHHHH
Q 002667 80 NNFTLIGRNYRN 91 (895)
Q Consensus 80 ~r~dLihk~yrk 91 (895)
.=-+++.++||+
T Consensus 630 Klpd~F~~~F~R 641 (1051)
T KOG0168|consen 630 KLPDTFSPSFRR 641 (1051)
T ss_pred HhHHHhhhhHhh
No 219
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=26.76 E-value=2.2e+02 Score=33.24 Aligned_cols=85 Identities=14% Similarity=0.051 Sum_probs=61.8
Q ss_pred HHHHHHHhhcCCCCchhhHHHHHHHHHHhccCCcc-----hhHHHHHHHHHHhcCCChhHHHHHHHHHHHhCCCCccchH
Q 002667 12 LVLVAVGKCARDPSVFVRKCAANALPKLHELRQEE-----ITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNNFTLIG 86 (895)
Q Consensus 12 iv~~aIkk~l~D~SPYVRK~AA~AI~Kly~ld~pd-----~~~~L~eil~~LL~D~~p~VvgsAv~Af~EIcP~r~dLih 86 (895)
.+++.+.++.+..+.-+|-.-..|+..+.+-- |. +.+.|.+++-+-|.=.|+.|..+++..+..+..+.-+++.
T Consensus 323 ~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~v-P~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~ 401 (415)
T PF12460_consen 323 QVLPKLLEGFKEADDEIKSNYLTALSHLLKNV-PKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELIS 401 (415)
T ss_pred HHHHHHHHHHhhcChhhHHHHHHHHHHHHhhC-CHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHH
Confidence 33444444444444447777788888887765 54 4566777777777767778999999999999988888888
Q ss_pred HHHHHHHHhCC
Q 002667 87 RNYRNLCQILP 97 (895)
Q Consensus 87 k~yrkLc~~L~ 97 (895)
.|...|+..|-
T Consensus 402 ~hl~sLI~~LL 412 (415)
T PF12460_consen 402 EHLSSLIPRLL 412 (415)
T ss_pred HHHHHHHHHHH
Confidence 88888877654
No 220
>PF05327 RRN3: RNA polymerase I specific transcription initiation factor RRN3; InterPro: IPR007991 This family consists of several eukaryotic proteins which are homologous to the Saccharomyces cerevisiae RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in the S. cerevisiae [] RNA polymerase I complex within the nucleolus. In mammalian cells, the phosphorylation state of Rrn3 regulates rDNA transcription by determining the steady-state concentration of the Rrn3 [].; PDB: 3TJ1_B.
Probab=26.59 E-value=6.8e+02 Score=30.67 Aligned_cols=70 Identities=17% Similarity=0.211 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHhhCcchHHHHHHHHHHHHHhhhccccccCCCCCCchhhhHHHHHHHHHhhCCcchHHHHHHHHHhhh
Q 002667 329 FAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQDPSCHEKVIIQLFRSLD 408 (895)
Q Consensus 329 f~~~aI~AIG~~A~~~p~~a~~cl~~Ll~LLs~~~~~~~~~~~~~~~~vv~E~V~vik~Llq~~P~~~~~ii~~L~~~ld 408 (895)
-....+++++.|+.++.......|+.++++.= .+.++.++..-+..+..|+-.++.-...++..|++.+-
T Consensus 52 ~l~~~L~~L~~~Vs~Ld~~~~~LV~ail~~~W----------~~~~~~~v~~y~~Fl~~Lvsa~~~yl~~vl~~LV~~f~ 121 (563)
T PF05327_consen 52 QLIRWLKALSSCVSLLDSSCKQLVEAILSLNW----------LGRDEDFVEAYIQFLINLVSAQPKYLSPVLSMLVKNFI 121 (563)
T ss_dssp HHHHHHHHHHHGGGGG-SCCHHHHHHHHT-TG----------GGS-HHHHHHHHHHHHHHHHH-GGGHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHcCCC----------CCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcc
Confidence 34444555555555555444444444433310 01122233223334555655666655666666666553
No 221
>COG2847 Copper(I)-binding protein [Inorganic ion transport and metabolism]
Probab=26.38 E-value=2.3e+02 Score=28.78 Aligned_cols=104 Identities=18% Similarity=0.177 Sum_probs=67.5
Q ss_pred CeeEEEEecCCCCCCCCCeEEEEEEEEeCCCCceeeeEeecccccchhhhhhhhhhhccccccCCCCCCCcccCCccccc
Q 002667 741 GLKVYYSFSSEASTISPQLVCLETFFENCSSETMSEVTLVDEESHKALDLADLTLATTASSLTSQSDLPTLVPMEEITSL 820 (895)
Q Consensus 741 GL~v~Y~f~r~p~~~~~~mv~v~l~f~N~s~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~i~~l 820 (895)
.+-|.=.|.| ...-+..|...=+++.|++++++.=+-+.... .++. -++.+-++ .++-+|++.++| .|
T Consensus 25 ~i~v~~a~~r-a~~pg~~~~a~~~ti~N~~~~~~~Lv~v~s~~----a~~~--ElHe~i~~----~gvmkMr~v~~i-~I 92 (151)
T COG2847 25 AIHVEDAWAR-ATPPGAKMGAAFMTITNNGDKDDRLVGVSSPI----AARA--ELHETIHD----GGVMKMRKVPGI-VI 92 (151)
T ss_pred ceEEeccEEE-ecCCCCcceeEEEEEeCCCCCCceEEEEecCc----ccee--EEEEEEec----CCeEEEEEcCcE-EE
Confidence 4667767777 56667889999999999999998888876542 1221 13322221 344457777766 68
Q ss_pred CCCCeeEE---EEEEecCCCCccceEEEEEcCCeeeeEeecCcc
Q 002667 821 EPGQTMKR---ILEVRFHHHLLPLKLALHCNGKKLPVKLRPDIG 861 (895)
Q Consensus 821 ~p~~~~~~---~~~i~f~~~~~~~~~~l~~~~~~~~v~~~p~vg 861 (895)
+||+++.- -.+|=|-+--+|++ .+++|+|.|+=..|
T Consensus 93 pa~~~v~lkpGgyHvMlm~lK~pl~-----eGd~v~vtL~f~~~ 131 (151)
T COG2847 93 PAGGTVELKPGGYHVMLMGLKKPLK-----EGDKVPVTLKFEKA 131 (151)
T ss_pred CCCceEEecCCCEEEEEeccCCCcc-----CCCEEEEEEEEecC
Confidence 88888764 57777777777754 35555555554333
No 222
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=26.03 E-value=1.4e+03 Score=32.27 Aligned_cols=126 Identities=17% Similarity=0.320 Sum_probs=78.7
Q ss_pred CCChHHHHHHHHHHHhcC----CHHH------HHHHHHHHHHHhcC--CCcchHHHHHHHHHHHHhCCcccccccc-cce
Q 002667 219 SHNSAVVLAAAGVHWIMS----PKED------VKRIVKPLLFILRS--SGASKYVVLCNIQVFAKALPHLFVPHYE-DFF 285 (895)
Q Consensus 219 S~NsAVVlaaa~l~~~la----p~~~------l~~~~~pLv~LL~s--~~eiqyvvL~~I~~i~~~~p~lF~~~l~-~Ff 285 (895)
++|..|.+-|+..+-.++ ..++ .+.+.+|+..++.. +.++|-.+|+++..|+..+.+-+..=-+ .|-
T Consensus 1148 ~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktIF~ 1227 (1780)
T PLN03076 1148 SENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFM 1227 (1780)
T ss_pred CcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCcHHHHH
Confidence 557777666655433222 2222 34678999888763 5789999999999998876543332212 222
Q ss_pred ec---cCC-cHHHHHHHHHHHHhhcCC----------CCHHHHHHHHHHhhccC-ChhHHHHHHHHHHHHHhhC
Q 002667 286 VS---SSD-SYQSKALKLEILSSIVTE----------SSISSVFKEFQDYIRDP-DRRFAADTVAAIGLCARKL 344 (895)
Q Consensus 286 i~---~sD-p~~IK~lKLeIL~~Lane----------~Nv~~IL~EL~~Yv~~~-D~ef~~~aI~AIG~~A~~~ 344 (895)
+. ..| ...|-.+.-+++..++++ +++...++=|..|+... +.++.-.||..+..|+..+
T Consensus 1228 VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~L 1301 (1780)
T PLN03076 1228 VFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKL 1301 (1780)
T ss_pred HHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHH
Confidence 21 123 356777888887766543 56677777777888643 4567777777777775544
No 223
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=25.76 E-value=2e+02 Score=26.52 Aligned_cols=60 Identities=17% Similarity=0.150 Sum_probs=44.5
Q ss_pred CCCCchhhHHHHHHHHHHhccC---CcchhHHHHHHHHHHhc--CCChhHHHHHHHHHHHhCCCC
Q 002667 22 RDPSVFVRKCAANALPKLHELR---QEEITSAIEEIVGILLN--DRSPGVVGAAAAAFASICPNN 81 (895)
Q Consensus 22 ~D~SPYVRK~AA~AI~Kly~ld---~pd~~~~L~eil~~LL~--D~~p~VvgsAv~Af~EIcP~r 81 (895)
.|.+..+|.-||.-+..+.+-. .|..++.+...+.+.|. .++..+.-.|+..+.++-|+-
T Consensus 16 ~~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~lG~~~ 80 (92)
T PF07571_consen 16 VDNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSALGPEA 80 (92)
T ss_pred CcchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 3567899999999999988752 14466677766666665 455668889999999996653
No 224
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=25.76 E-value=2.5e+02 Score=27.51 Aligned_cols=72 Identities=17% Similarity=0.139 Sum_probs=46.7
Q ss_pred HHHHhhhhhccCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH-HHhcCCCcchHHHHHHHHHHHHhCCccccccc
Q 002667 208 LLLQCTSPLLWSHNSAVVLAAAGVHWIMSPKEDVKRIVKPLL-FILRSSGASKYVVLCNIQVFAKALPHLFVPHY 281 (895)
Q Consensus 208 lLL~~~~pLLqS~NsAVVlaaa~l~~~lap~~~l~~~~~pLv-~LL~s~~eiqyvvL~~I~~i~~~~p~lF~~~l 281 (895)
++-+++.+.+..-+-+.+++.+-.+=. . ...-+.+++.|. ||-+.++++++.+|..+-.++..+...|...+
T Consensus 4 ~i~kATs~~l~~~dw~~~l~icD~i~~-~-~~~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev 76 (133)
T smart00288 4 LIDKATSPSLLEEDWELILEICDLINS-T-PDGPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEV 76 (133)
T ss_pred HHHHHcCcCCCCcCHHHHHHHHHHHhC-C-CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHH
Confidence 344556666666666777766654311 1 122344556665 44456799999999999999998887776554
No 225
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=25.31 E-value=2.6e+02 Score=34.57 Aligned_cols=101 Identities=15% Similarity=0.187 Sum_probs=71.7
Q ss_pred HHHHhhcCCCCchhhHHHHHHHHHHhc-cCCcc---hhHHHHHHHHHHhcCCChhHHHHHHHHHHHhC---CCC--ccch
Q 002667 15 VAVGKCARDPSVFVRKCAANALPKLHE-LRQEE---ITSAIEEIVGILLNDRSPGVVGAAAAAFASIC---PNN--FTLI 85 (895)
Q Consensus 15 ~aIkk~l~D~SPYVRK~AA~AI~Kly~-ld~pd---~~~~L~eil~~LL~D~~p~VvgsAv~Af~EIc---P~r--~dLi 85 (895)
..+-+.+.|++-.|-+++.-||..+-- ...+. -....++.+..++.|.++.+..+++.++..+- -+. ..+.
T Consensus 422 ~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~ 501 (678)
T KOG1293|consen 422 QPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLL 501 (678)
T ss_pred HHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 344455699999999999999998653 22121 23346778889999999999999999999883 221 3455
Q ss_pred HHHHHHHHHhCCCCChhh-HHHHHHHHHhhh
Q 002667 86 GRNYRNLCQILPDVEEWG-QILLIEILLRYV 115 (895)
Q Consensus 86 hk~yrkLc~~L~d~dEWg-Qv~iL~lL~rY~ 115 (895)
.+...+++-.+-.=.+|+ |-..+++|+...
T Consensus 502 ~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~ 532 (678)
T KOG1293|consen 502 AKIPANLILDLINDPDWAVQEQCFQLLRNLT 532 (678)
T ss_pred HHhhHHHHHHHHhCCCHHHHHHHHHHHHHhh
Confidence 666555555555556677 888888887664
No 226
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=25.29 E-value=7.7e+02 Score=25.46 Aligned_cols=137 Identities=13% Similarity=0.100 Sum_probs=74.3
Q ss_pred HHHHHHHHHhhccCChhHHHHHHHHHHHHHhhCcchHHHHHHHHHHHHHhhhccccccCCCCCCchhhhHHHHHHHHHhh
Q 002667 312 SSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQ 391 (895)
Q Consensus 312 ~~IL~EL~~Yv~~~D~ef~~~aI~AIG~~A~~~p~~a~~cl~~Ll~LLs~~~~~~~~~~~~~~~~vv~E~V~vik~Llq~ 391 (895)
+.-++.+.+.+.+.+..++..|++-|+.+...==-.-..|+..|+.|... .+..+-.-+...++.|-++
T Consensus 7 Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~cvp~lIAL~ts-----------~~~~ir~~A~~~l~~l~eK 75 (187)
T PF12830_consen 7 QRYLKNILELCLSSDDSVRLAALQVLELILRQGLVNPKQCVPTLIALETS-----------PNPSIRSRAYQLLKELHEK 75 (187)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHHHHhHhhhhhCC-----------CChHHHHHHHHHHHHHHHH
Confidence 44566677777788889999999988766543212223789999998653 1222333355567777777
Q ss_pred CCcchHHHHHHHHHhhhccCchhhHHhhhhhhccccCCCCCccchHHHHHHHHHHhhccCcHHHHHHHHHHHHHHhhhcC
Q 002667 392 DPSCHEKVIIQLFRSLDSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAK 471 (895)
Q Consensus 392 ~P~~~~~ii~~L~~~ld~i~~p~ArAsIiWLLGEY~~~~e~ip~ia~dvLr~l~k~F~~E~~~VKlqILtaaaKL~~~~p 471 (895)
+|..... ++.+ ..+.+.-+-..-+++...........++..++.-.. .....|...|+..+|.|-...
T Consensus 76 ~~s~v~~---~~~~--------gi~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~-~~r~~R~~Fl~~l~k~f~~~~ 143 (187)
T PF12830_consen 76 HESLVES---RYSE--------GIRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLR-SNRKSRRKFLKSLLKQFDFDL 143 (187)
T ss_pred hHHHHHH---HHHH--------HHHHHHHHHHHhcCCccccccccchHHHHHHHHHHh-cccHhHHHHHHHHHHHHHhhc
Confidence 7764221 1111 122222211111111000000002345565654433 556778888888888887664
No 227
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=24.99 E-value=2.2e+02 Score=25.26 Aligned_cols=55 Identities=22% Similarity=0.161 Sum_probs=35.3
Q ss_pred CCeEEEEEEEEeCCCCceeeeEeecccccchhhhhhhhhhhccccccCCCCCCCcccCCcccccCCCCeeEEEEEEecC
Q 002667 757 PQLVCLETFFENCSSETMSEVTLVDEESHKALDLADLTLATTASSLTSQSDLPTLVPMEEITSLEPGQTMKRILEVRFH 835 (895)
Q Consensus 757 ~~mv~v~l~f~N~s~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~i~~l~p~~~~~~~~~i~f~ 835 (895)
..=+.|.++++|.+.....++.+.=- .+|- ...-..|..|+||++.+..+-+.+.
T Consensus 18 g~~~~i~~~V~N~G~~~~~~~~v~~~-----~~~~-------------------~~~~~~i~~L~~g~~~~v~~~~~~~ 72 (101)
T PF07705_consen 18 GEPVTITVTVKNNGTADAENVTVRLY-----LDGN-------------------SVSTVTIPSLAPGESETVTFTWTPP 72 (101)
T ss_dssp TSEEEEEEEEEE-SSS-BEEEEEEEE-----ETTE-------------------EEEEEEESEB-TTEEEEEEEEEE-S
T ss_pred CCEEEEEEEEEECCCCCCCCEEEEEE-----ECCc-------------------eeccEEECCcCCCcEEEEEEEEEeC
Confidence 45567888999999998888777521 1221 0122367899999999988887776
No 228
>PHA03159 hypothetical protein; Provisional
Probab=24.97 E-value=77 Score=31.14 Aligned_cols=39 Identities=21% Similarity=0.335 Sum_probs=32.8
Q ss_pred CCCccchhhhHHHHHHHHhhcCCCCchhhHHHHHHHHHHhc
Q 002667 1 MAGIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHE 41 (895)
Q Consensus 1 MssIRv~~I~piv~~aIkk~l~D~SPYVRK~AA~AI~Kly~ 41 (895)
|||||...|++-++..-+.|-......|| |.+.+..-|.
T Consensus 1 mssi~fq~~ie~il~~cq~~~~~~dsivr--aihsvi~qyn 39 (160)
T PHA03159 1 MSSIKFQKIIENILKECQDCHHQQDSIVR--AIHSVIHQYN 39 (160)
T ss_pred CCcccHHHHHHHHHHHHHhcchhhhHHHH--HHHHHHHHHh
Confidence 89999999999999999999998888998 5566665443
No 229
>KOG2753 consensus Uncharacterized conserved protein, contains PCI domain [General function prediction only]
Probab=24.87 E-value=1e+03 Score=27.38 Aligned_cols=144 Identities=15% Similarity=0.208 Sum_probs=76.5
Q ss_pred ChhHHHHHHhhhhhccCCChHHHHHHHHHHH-hcCCH--HH-HHHHHHHHHHHhcC--CCc-chHHHHHHHHHHHHhCCc
Q 002667 203 NDDVKLLLQCTSPLLWSHNSAVVLAAAGVHW-IMSPK--ED-VKRIVKPLLFILRS--SGA-SKYVVLCNIQVFAKALPH 275 (895)
Q Consensus 203 d~D~~lLL~~~~pLLqS~NsAVVlaaa~l~~-~lap~--~~-l~~~~~pLv~LL~s--~~e-iqyvvL~~I~~i~~~~p~ 275 (895)
++|+...|+++..|++..++-=+.+.+..++ .+++. .. -+...+.|-.|.+. .+. +||-++.++.+++..+.-
T Consensus 60 ekdle~vlnsi~sLi~~~~~e~~e~~v~a~~ekva~q~n~~~~~l~L~vLsnLfn~~d~~~~aR~~Vy~~lv~la~~~~~ 139 (378)
T KOG2753|consen 60 EKDLECVLNSIVSLIKNAPPEKVEEMVKAICEKVAKQPNDKTASLRLQVLSNLFNGVDKPTPARYQVYMSLVTLAASCKL 139 (378)
T ss_pred cchHHHHHHHHHHHHHhCCHHHhHHHHHHHHHHHhcCccCCCcccHHHHHHHHHhccCCCchHHHHHHHHHHHHHhhcce
Confidence 4578888888888888777644444444433 12221 11 11223333344332 333 999999999999987752
Q ss_pred --ccccc---cccceeccCCcHHHHHHHHHHHHhhcCCCC----HHHHHHHHHHhhccCC-hhHHHHHHHHHHHHHhhCc
Q 002667 276 --LFVPH---YEDFFVSSSDSYQSKALKLEILSSIVTESS----ISSVFKEFQDYIRDPD-RRFAADTVAAIGLCARKLP 345 (895)
Q Consensus 276 --lF~~~---l~~Ffi~~sDp~~IK~lKLeIL~~Lane~N----v~~IL~EL~~Yv~~~D-~ef~~~aI~AIG~~A~~~p 345 (895)
...+. +..||--.+=+..=++.=+..+..-.-+.+ ...++-||..-.+..| .+-+.+|.++| +-|.+-|
T Consensus 140 ~~~i~~~lk~~~~~lkew~~~vedqrel~r~v~~al~~~k~~~~s~kvmt~lLgtyt~dnas~AredA~rcV-~~av~dP 218 (378)
T KOG2753|consen 140 IEYIVPNLKQLDDWLKEWNISVEDQRELLRAVHKALKDNKSVDESSKVMTELLGTYTEDNASEAREDAMRCV-VEAVKDP 218 (378)
T ss_pred eeeecccHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHhcccchhHHHHHHHHHH-HHHHcCC
Confidence 23333 344443222233223333333333333344 4566677665444445 34455667777 4466777
Q ss_pred ch
Q 002667 346 KM 347 (895)
Q Consensus 346 ~~ 347 (895)
..
T Consensus 219 ~~ 220 (378)
T KOG2753|consen 219 KI 220 (378)
T ss_pred ce
Confidence 65
No 230
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=24.79 E-value=62 Score=30.10 Aligned_cols=62 Identities=19% Similarity=0.163 Sum_probs=36.4
Q ss_pred eEEEEEEEEeCCCCceeeeEeecccccchhhhhhhhhhhccccccCCCCCCC--cccCCcccccCCCCeeEEEEEEecCC
Q 002667 759 LVCLETFFENCSSETMSEVTLVDEESHKALDLADLTLATTASSLTSQSDLPT--LVPMEEITSLEPGQTMKRILEVRFHH 836 (895)
Q Consensus 759 mv~v~l~f~N~s~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~f~~i~~l~p~~~~~~~~~i~f~~ 836 (895)
=+.|.+.|+|.+++++++|.+.=-... -. +.+++. +..-.....|.||++.+..+-|.+.+
T Consensus 16 d~~v~v~~~N~~~~~l~~v~~~l~~~~--v~---------------ytG~~~~~~~~~~~~~~l~p~~~~~~~~~i~p~~ 78 (107)
T PF00927_consen 16 DFTVSVSFTNPSSEPLRNVSLNLCAFT--VE---------------YTGLTRDQFKKEKFEVTLKPGETKSVEVTITPSQ 78 (107)
T ss_dssp EEEEEEEEEE-SSS-EECEEEEEEEEE--EE---------------CTTTEEEEEEEEEEEEEE-TTEEEEEEEEE-HHS
T ss_pred CEEEEEEEEeCCcCccccceeEEEEEE--EE---------------ECCcccccEeEEEcceeeCCCCEEEEEEEEEcee
Confidence 356899999999999999776531100 00 112110 12223445899999999999997766
Q ss_pred C
Q 002667 837 H 837 (895)
Q Consensus 837 ~ 837 (895)
-
T Consensus 79 y 79 (107)
T PF00927_consen 79 Y 79 (107)
T ss_dssp H
T ss_pred E
Confidence 5
No 231
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=24.67 E-value=66 Score=40.06 Aligned_cols=54 Identities=28% Similarity=0.208 Sum_probs=24.3
Q ss_pred CCCCchhhHHHHHHHHHHhccCCcchhHHHHHHHHHHhcCCChhHHHHHHHHHHHhCC
Q 002667 22 RDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICP 79 (895)
Q Consensus 22 ~D~SPYVRK~AA~AI~Kly~ld~pd~~~~L~eil~~LL~D~~p~VvgsAv~Af~EIcP 79 (895)
+|.+--|||+|+.||.=+.--| |++.. .++..|-..-+|-|-..|.+|+-=.|.
T Consensus 565 sD~nDDVrRaAVialGFVl~~d-p~~~~---s~V~lLses~N~HVRyGaA~ALGIaCA 618 (929)
T KOG2062|consen 565 SDVNDDVRRAAVIALGFVLFRD-PEQLP---STVSLLSESYNPHVRYGAAMALGIACA 618 (929)
T ss_pred cccchHHHHHHHHHheeeEecC-hhhch---HHHHHHhhhcChhhhhhHHHHHhhhhc
Confidence 4555555555555555332223 43322 222222223455555555555555553
No 232
>KOG2141 consensus Protein involved in high osmolarity signaling pathway [Signal transduction mechanisms]
Probab=24.66 E-value=1.1e+03 Score=30.04 Aligned_cols=178 Identities=12% Similarity=0.109 Sum_probs=0.0
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhhccCChhHHHHHHH------------HHHHHHhhCcchHHHHHHHHHHHHHhhh
Q 002667 296 ALKLEILSSIVTESSISSVFKEFQDYIRDPDRRFAADTVA------------AIGLCARKLPKMANTCVEGLLALIRQEL 363 (895)
Q Consensus 296 ~lKLeIL~~Lane~Nv~~IL~EL~~Yv~~~D~ef~~~aI~------------AIG~~A~~~p~~a~~cl~~Ll~LLs~~~ 363 (895)
++|+.=+.+=-.+.|+..|..++..--.+.+...+..++. .+-.+++.+...+..|.......+.
T Consensus 320 ~rkv~g~LNKLSdaNi~~I~~~i~~Ly~~~sr~~v~~sLtk~l~~~~~~~~~~ld~~~~~y~AL~~~l~~~vg~eig--- 396 (822)
T KOG2141|consen 320 RRKVNGSLNKLSDANIIKIIAGIAELYMNNSRYDVTSSLTKLLLKALLGPFRLLDSLLTTYAALAAMLHTMVGNEIG--- 396 (822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHH---
Q ss_pred ccccccCCCCCCchhhhHHHHHHHHHhhCCcchHHHHHHHHHhhhccCchhhHHhhhhhhccccCCCCCccchHHHHHHH
Q 002667 364 LTSDIESGNGEADVLIQSIISIKSIIKQDPSCHEKVIIQLFRSLDSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKY 443 (895)
Q Consensus 364 ~~~~~~~~~~~~~vv~E~V~vik~Llq~~P~~~~~ii~~L~~~ld~i~~p~ArAsIiWLLGEY~~~~e~ip~ia~dvLr~ 443 (895)
....|+ .++..++.+.+.-+..+. =..+..--.--+.++.+|=+. +.++-|++|+
T Consensus 397 ------------ahf~q~--~ve~f~~~~~~~~~~~~~-----~K~~~Nl~~~l~ylynF~ivs------~~LiydiI~k 451 (822)
T KOG2141|consen 397 ------------AHFLQT--FVEDFLKSYKEEEEMDLK-----DKSLNNIVLFLSYLYNFGIVS------CSLIYDIIRK 451 (822)
T ss_pred ------------HHHHHH--HHHHHHHHHHHHHhcccc-----cchhhhHHHHHHHHHHhhccc------HHHHHHHHHH
Q ss_pred HHHhhccCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHccCCChHHHhHHHHH
Q 002667 444 LAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTITRLFSYLLELAECDLNYDVRDRARFF 504 (895)
Q Consensus 444 l~k~F~~E~~~VKlqILtaaaKL~~~~p~e~~~~l~~L~qyvL~la~~D~n~DVRDRAr~y 504 (895)
|+.++..-..+. ||+...-.+...-..+...++.+.+.+...|..=.---+.-|+||+
T Consensus 452 l~~~l~e~~ve~---ll~ii~~~G~~LRkDDp~alk~~i~eiq~~a~~a~~s~~~pR~rFm 509 (822)
T KOG2141|consen 452 LAENLNETNVEA---LLTIIANCGFSLRKDDPLALKDIITEIQSKAASAKISAISPRLRFM 509 (822)
T ss_pred HHhchhhhhHHH---HHHHHHHccchhcCCChHHHHHHHHHHHHHhhcCCccccchHHHHH
No 233
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=23.50 E-value=94 Score=32.17 Aligned_cols=40 Identities=15% Similarity=0.105 Sum_probs=32.4
Q ss_pred hhHHHHHHHHhhcCCCCchhhHHHHHHHHHHhccCCcchhH
Q 002667 9 ISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITS 49 (895)
Q Consensus 9 I~piv~~aIkk~l~D~SPYVRK~AA~AI~Kly~ld~pd~~~ 49 (895)
-.+.++..+...+.|...||||+.+-++.-++.-+ |+...
T Consensus 152 ~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~-~~~v~ 191 (213)
T PF08713_consen 152 DFDELLEIIEALLKDEEYYVQKAIGWALREIGKKD-PDEVL 191 (213)
T ss_dssp HHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT--HHHHH
T ss_pred CHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhC-HHHHH
Confidence 34677888899999999999999999999999988 76433
No 234
>cd05700 S1_Rrp5_repeat_hs9 S1_Rrp5_repeat_hs9: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes Homo sapiens S1 repeat 9 (hs9). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=23.47 E-value=65 Score=27.69 Aligned_cols=17 Identities=41% Similarity=0.714 Sum_probs=14.9
Q ss_pred ccCCCCeeEE-EEEEecC
Q 002667 819 SLEPGQTMKR-ILEVRFH 835 (895)
Q Consensus 819 ~l~p~~~~~~-~~~i~f~ 835 (895)
.|.|||.+++ +|+|||-
T Consensus 40 nl~pGqK~kaviLhvD~l 57 (65)
T cd05700 40 NVTPGCKLKAVILHVDFV 57 (65)
T ss_pred ecCCCceeEEEEEEEeeE
Confidence 5889999988 8999984
No 235
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=23.16 E-value=4.7e+02 Score=28.85 Aligned_cols=79 Identities=15% Similarity=0.274 Sum_probs=51.5
Q ss_pred HHHHhhcCCCCHHHHHHHHHHhhcc---CChhHHHHHHHHHHHHHhhCcchHHHHHHHHHHHHHhhhccccccCCCCCCc
Q 002667 300 EILSSIVTESSISSVFKEFQDYIRD---PDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEAD 376 (895)
Q Consensus 300 eIL~~Lane~Nv~~IL~EL~~Yv~~---~D~ef~~~aI~AIG~~A~~~p~~a~~cl~~Ll~LLs~~~~~~~~~~~~~~~~ 376 (895)
+.|..+|...+...+-+=|..|++. ...+|.+.+++.|.. .-+|+....++..|+.+|. |+-..
T Consensus 137 ~~La~~a~~~~~~~La~il~~ya~~~fr~~~dfl~~v~~~l~~--~f~P~~~~~~l~~Ll~lL~-----------n~~~w 203 (262)
T PF14225_consen 137 EALAQVAEAQGLPNLARILSSYAKGRFRDKDDFLSQVVSYLRE--AFFPDHEFQILTFLLGLLE-----------NGPPW 203 (262)
T ss_pred HHHHHHHHhCCCccHHHHHHHHHhcCCCCHHHHHHHHHHHHHH--HhCchhHHHHHHHHHHHHh-----------CCcHH
Confidence 5566666554444444444455543 345799999998842 2348998999999999997 33344
Q ss_pred hhhhHHHHHHHHHhh
Q 002667 377 VLIQSIISIKSIIKQ 391 (895)
Q Consensus 377 vv~E~V~vik~Llq~ 391 (895)
+-.+++.+|+.+++.
T Consensus 204 ~~~~~L~iL~~ll~~ 218 (262)
T PF14225_consen 204 LRRKTLQILKVLLPH 218 (262)
T ss_pred HHHHHHHHHHHHhcc
Confidence 455566677777764
No 236
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=23.01 E-value=1.2e+02 Score=39.85 Aligned_cols=13 Identities=31% Similarity=0.567 Sum_probs=7.6
Q ss_pred HHHhHHHHHHHHc
Q 002667 496 DVRDRARFFKKLF 508 (895)
Q Consensus 496 DVRDRAr~y~~LL 508 (895)
-+-||.||..+..
T Consensus 1524 ~~adr~Rf~qat~ 1536 (3015)
T KOG0943|consen 1524 AIADRMRFLQATA 1536 (3015)
T ss_pred hHHHHHHHHHHHH
Confidence 3556777665544
No 237
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=22.80 E-value=9e+02 Score=30.04 Aligned_cols=28 Identities=7% Similarity=0.207 Sum_probs=20.7
Q ss_pred HHHHhhccCcHHHHHHHHHHHHHHhhhc
Q 002667 443 YLAWCFKSEAVETKLQILNTTIKVLLCA 470 (895)
Q Consensus 443 ~l~k~F~~E~~~VKlqILtaaaKL~~~~ 470 (895)
.+-|...+-...||-.+..+.+--|...
T Consensus 241 l~ewgl~dRe~sv~~a~~d~ia~~w~~~ 268 (885)
T COG5218 241 LMEWGLLDREFSVKGALVDAIASAWRIP 268 (885)
T ss_pred hhhhcchhhhhhHHHHHHHHHHHHhccc
Confidence 5556666667788888888888888654
No 238
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=22.75 E-value=3.8e+02 Score=25.44 Aligned_cols=85 Identities=15% Similarity=0.176 Sum_probs=60.4
Q ss_pred hhhHHHHHHHHhhcC-CCCchhhHHHHHHHHHHhccCCcchhHHHHHHHHHHhcCCChhHH-HHHHHHHHHhCCCC--cc
Q 002667 8 VISPLVLVAVGKCAR-DPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVV-GAAAAAFASICPNN--FT 83 (895)
Q Consensus 8 ~I~piv~~aIkk~l~-D~SPYVRK~AA~AI~Kly~ld~pd~~~~L~eil~~LL~D~~p~Vv-gsAv~Af~EIcP~r--~d 83 (895)
.+++.+++.+-+++. ...+-.|=+|-+-+..+-..- |=..+.+..+++.++....+.-. ..|+.++.-+|... .+
T Consensus 2 ~~l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~-~L~~~~l~~l~~~i~~~~~~~~~~~~~l~~L~~l~q~q~~~~ 80 (121)
T PF12397_consen 2 DILPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKV-PLSDEVLNALMESILKNWTQETVQRQALICLIVLCQSQENVD 80 (121)
T ss_pred cHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhc-CCcHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHcccccc
Confidence 468889999999999 888888888888888887665 44455666677777766555544 88899988888433 33
Q ss_pred ch-HHHHHHHH
Q 002667 84 LI-GRNYRNLC 93 (895)
Q Consensus 84 Li-hk~yrkLc 93 (895)
.+ .+.+++|+
T Consensus 81 ~lp~~~~~~l~ 91 (121)
T PF12397_consen 81 SLPRKVFKALL 91 (121)
T ss_pred cCCHHHHHHHH
Confidence 33 33455544
No 239
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=21.73 E-value=2.8e+02 Score=31.70 Aligned_cols=75 Identities=21% Similarity=0.269 Sum_probs=49.2
Q ss_pred chhhhHHHHHHHHhhc------CCCCchhhHHHHHHHHHHhccC---CcchhHHHHHHH-HHHhcCCChhH-HHHHHHHH
Q 002667 6 LHVISPLVLVAVGKCA------RDPSVFVRKCAANALPKLHELR---QEEITSAIEEIV-GILLNDRSPGV-VGAAAAAF 74 (895)
Q Consensus 6 v~~I~piv~~aIkk~l------~D~SPYVRK~AA~AI~Kly~ld---~pd~~~~L~eil-~~LL~D~~p~V-vgsAv~Af 74 (895)
++.++|.++.++-.-- .+.+...|.-||..+..+.+.- .+.-.+.+...+ +.|+..+.|.. .-.|++.+
T Consensus 256 lh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~~~~YGAi~GL 335 (343)
T cd08050 256 LHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPLTTHYGAIVGL 335 (343)
T ss_pred HHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCcchhhHHHHHH
Confidence 4557777776663333 3455699999999999888652 144566666444 44554444443 77889999
Q ss_pred HHhCCC
Q 002667 75 ASICPN 80 (895)
Q Consensus 75 ~EIcP~ 80 (895)
..+.++
T Consensus 336 ~~lG~~ 341 (343)
T cd08050 336 SALGPE 341 (343)
T ss_pred HHhCcc
Confidence 888764
No 240
>PF09624 DUF2393: Protein of unknown function (DUF2393); InterPro: IPR013417 The function of this protein is unknown. It is always found as part of a two-gene operon with IPR013416 from INTERPRO, a protein that appears to span the membrane seven times. It has so far been found in the bacteria Anabaena sp. (strain PCC 7120), Agrobacterium tumefaciens, Rhizobium meliloti, and Gloeobacter violaceus.
Probab=21.54 E-value=3.1e+02 Score=27.14 Aligned_cols=76 Identities=9% Similarity=0.077 Sum_probs=46.4
Q ss_pred CCeEEEEEEEEeCCCCceeeeEeeccccc---chhhhhhhhhhhccccccCCCCCCCcccC----Ccccc-cCCCCeeEE
Q 002667 757 PQLVCLETFFENCSSETMSEVTLVDEESH---KALDLADLTLATTASSLTSQSDLPTLVPM----EEITS-LEPGQTMKR 828 (895)
Q Consensus 757 ~~mv~v~l~f~N~s~~~~~~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~f----~~i~~-l~p~~~~~~ 828 (895)
.....|..+++|.|+.++++..|.-+=.. ....+.... . -+..+| .+|.. |+||++..-
T Consensus 61 ~~~~~v~g~V~N~g~~~i~~c~i~~~l~~~~~~~~n~~~~~------------~-~~~~~f~~~~~~i~~~L~~~e~~~f 127 (149)
T PF09624_consen 61 SESFYVDGTVTNTGKFTIKKCKITVKLYNDKQVSGNKFKEI------------F-YQQIPFVKKSIPIADNLKPGESKEF 127 (149)
T ss_pred ccEEEEEEEEEECCCCEeeEEEEEEEEEeCCCccCchhhhh------------h-ccccchhccceeHHhhcCcccceeE
Confidence 46677999999999999999998754211 001111100 0 013334 44554 999999988
Q ss_pred EEEEecCCCCccceEEE
Q 002667 829 ILEVRFHHHLLPLKLAL 845 (895)
Q Consensus 829 ~~~i~f~~~~~~~~~~l 845 (895)
.+=|+....-+..++.+
T Consensus 128 ~~~~~~~p~~~~~~~~~ 144 (149)
T PF09624_consen 128 RFIFPYPPYFGNYNIRV 144 (149)
T ss_pred EEEecCCccCCCceEEE
Confidence 87777655544544443
No 241
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=21.52 E-value=1.8e+02 Score=29.61 Aligned_cols=37 Identities=24% Similarity=0.247 Sum_probs=32.0
Q ss_pred hHHHHHHHHhhcCCCCchhhHHHHHHHHHHhccCCcch
Q 002667 10 SPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEI 47 (895)
Q Consensus 10 ~piv~~aIkk~l~D~SPYVRK~AA~AI~Kly~ld~pd~ 47 (895)
.+.++..+..++.|.+.||||+.+-++.-++..+ |+.
T Consensus 139 ~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~~-~~~ 175 (197)
T cd06561 139 FDLLLEIIERLLHDEEYFVQKAVGWALREYGKKD-PER 175 (197)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhC-HHH
Confidence 4566777889999999999999999999999988 753
No 242
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=21.37 E-value=60 Score=39.60 Aligned_cols=74 Identities=22% Similarity=0.223 Sum_probs=40.6
Q ss_pred CccchhhhHHHHHHHHhhcCCCCchhhHHHHHHHHHHhccCCcchhHHHHHHHHHHhc--CCChhHHHHHHHHHHHhCCC
Q 002667 3 GIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLN--DRSPGVVGAAAAAFASICPN 80 (895)
Q Consensus 3 sIRv~~I~piv~~aIkk~l~D~SPYVRK~AA~AI~Kly~ld~pd~~~~L~eil~~LL~--D~~p~VvgsAv~Af~EIcP~ 80 (895)
.+..+.+++.+++.|...- +.++.||-.|+.|+-++-... |+ .+.+++..++. ..++-|-.+|+.++.+.-|.
T Consensus 516 N~g~~~~i~~l~~~i~~~~-~~~~~~R~~Ai~Alr~~~~~~-~~---~v~~~l~~I~~n~~e~~EvRiaA~~~lm~~~P~ 590 (618)
T PF01347_consen 516 NLGHPESIPVLLPYIEGKE-EVPHFIRVAAIQALRRLAKHC-PE---KVREILLPIFMNTTEDPEVRIAAYLILMRCNPS 590 (618)
T ss_dssp HHT-GGGHHHHHTTSTTSS--S-HHHHHHHHHTTTTGGGT--HH---HHHHHHHHHHH-TTS-HHHHHHHHHHHHHT---
T ss_pred ccCCchhhHHHHhHhhhcc-ccchHHHHHHHHHHHHHhhcC-cH---HHHHHHHHHhcCCCCChhHHHHHHHHHHhcCCC
Confidence 3455666665554433332 558889999888888774444 43 23334444443 34577888888888887677
Q ss_pred C
Q 002667 81 N 81 (895)
Q Consensus 81 r 81 (895)
.
T Consensus 591 ~ 591 (618)
T PF01347_consen 591 P 591 (618)
T ss_dssp H
T ss_pred H
Confidence 4
No 243
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=21.37 E-value=1.8e+02 Score=27.60 Aligned_cols=62 Identities=16% Similarity=0.248 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHhhCcchHHHHH--HHHHHHHHhhhccccccCCCCCCchhhh-HHHHHHHHHhhCCcchH
Q 002667 329 FAADTVAAIGLCARKLPKMANTCV--EGLLALIRQELLTSDIESGNGEADVLIQ-SIISIKSIIKQDPSCHE 397 (895)
Q Consensus 329 f~~~aI~AIG~~A~~~p~~a~~cl--~~Ll~LLs~~~~~~~~~~~~~~~~vv~E-~V~vik~Llq~~P~~~~ 397 (895)
|++..|+.||.++-+-+.+-+.+. .++--+|+.- .++....++.| ++..||.|+..+++-++
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c-------~iD~~nP~irEwai~aiRnL~e~n~eNQ~ 66 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCC-------NIDDHNPFIREWAIFAIRNLCEGNPENQE 66 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhc-------CCCcccHHHHHHHHHHHHHHHhCCHHHHH
Confidence 577888999999988887776543 4444455431 11233346777 77889999999987644
No 244
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [].
Probab=21.35 E-value=76 Score=40.73 Aligned_cols=26 Identities=12% Similarity=0.552 Sum_probs=18.0
Q ss_pred CCCCeEEEEEEEEeCCCCceeeeEee
Q 002667 755 ISPQLVCLETFFENCSSETMSEVTLV 780 (895)
Q Consensus 755 ~~~~mv~v~l~f~N~s~~~~~~i~~~ 780 (895)
++|.|+.+-=+++.|--..+.+|..|
T Consensus 563 VTPalllm~~~L~q~~v~s~~di~~G 588 (840)
T PF04147_consen 563 VTPALLLMSEYLSQCRVRSLRDIASG 588 (840)
T ss_pred hhHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 47777777777777776666666555
No 245
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=20.94 E-value=1.2e+03 Score=26.29 Aligned_cols=98 Identities=13% Similarity=0.164 Sum_probs=51.3
Q ss_pred CcchHH--HHHHHHHHHHHhhhccccccCCCCCCchhhhHHHHHHHHHhh-CCcc----hHHHHHHHHHhhhccCc-hhh
Q 002667 344 LPKMAN--TCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQ-DPSC----HEKVIIQLFRSLDSIKV-PEA 415 (895)
Q Consensus 344 ~p~~a~--~cl~~Ll~LLs~~~~~~~~~~~~~~~~vv~E~V~vik~Llq~-~P~~----~~~ii~~L~~~ld~i~~-p~A 415 (895)
..+||+ .++..|.+.|+.. +..-.++..-+.+-|.|-|- +|.. |.+++.-.-..+..+.. .-+
T Consensus 22 ~~EWAD~is~L~kL~k~lq~~---------~~~~~~IP~k~~v~krLaqCL~P~LPsGVH~KaLevY~~IF~~ig~~~L~ 92 (307)
T PF04118_consen 22 SSEWADYISFLGKLLKALQNS---------NNQFPYIPHKLQVSKRLAQCLNPALPSGVHQKALEVYEYIFERIGPDGLA 92 (307)
T ss_pred hhhHHHHHHHHHHHHHHHhcc---------CCCCceeCcHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCHHHHH
Confidence 456665 5566666666610 11223555556666667663 6664 77776655556666643 445
Q ss_pred HHhhhhhhccccCCCCCccchHHHHHHHHHHhhcc
Q 002667 416 RVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKS 450 (895)
Q Consensus 416 rAsIiWLLGEY~~~~e~ip~ia~dvLr~l~k~F~~ 450 (895)
+---+|+.|=+.-.....-.+-|.+|..+-+.|..
T Consensus 93 ~dl~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lp 127 (307)
T PF04118_consen 93 QDLPIYSPGLFPLFSYASIQVKPQLLDIYEKYYLP 127 (307)
T ss_pred hhcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcC
Confidence 55568888854210000012345556655444443
No 246
>KOG3723 consensus PH domain protein Melted [Signal transduction mechanisms]
Probab=20.81 E-value=1.6e+03 Score=27.68 Aligned_cols=68 Identities=12% Similarity=0.121 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHhcCCCcc--------hHHHHHHHHHHHHhCCcccccccccceeccCCcHHHHHHHHHHHHhhc
Q 002667 239 EDVKRIVKPLLFILRSSGAS--------KYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKLEILSSIV 306 (895)
Q Consensus 239 ~~l~~~~~pLv~LL~s~~ei--------qyvvL~~I~~i~~~~p~lF~~~l~~Ffi~~sDp~~IK~lKLeIL~~La 306 (895)
+.+..++--+..||..+.|+ -|-.|+.+.......|+...||+..|.+....+.--.+..|.+|+.|.
T Consensus 151 ~ylslaai~~adLL~~hTEv~~~siLSgn~~LLrvlS~Vye~~P~~i~PhlP~l~~lL~q~~p~~~~ll~~l~~LI 226 (851)
T KOG3723|consen 151 NYLSLAAITKADLLADHTEVIVKSILSGNTMLLRVLSAVYEKQPQPINPHLPELLALLSQLEPEQYHLLRLLHVLI 226 (851)
T ss_pred hhhhHHHHhhhhhccCchHHHHHHHhccchHHHHHHHHHHhcCCCccCcccHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 45666666666777665553 244566666666788999999998886654443334445555555543
No 247
>PF10193 Telomere_reg-2: Telomere length regulation protein; InterPro: IPR019337 This entry represents a conserved domain found in a group of proteins called telomere-length regulation, or clock abnormal protein-2, which are conserved from plants to humans. These proteins regulate telomere length and contribute to silencing of sub-telomeric regions []. In vitro the protein binds to telomeric DNA repeats. ; PDB: 3O4Z_B.
Probab=20.73 E-value=6.4e+02 Score=24.14 Aligned_cols=43 Identities=21% Similarity=0.246 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHccCCChHHHhHHHHHHHH
Q 002667 454 ETKLQILNTTIKVLLCAKGGDMWTITRLFSYLLELAECDLNYDVRDRARFFKKL 507 (895)
Q Consensus 454 ~VKlqILtaaaKL~~~~p~e~~~~l~~L~qyvL~la~~D~n~DVRDRAr~y~~L 507 (895)
+.|.+.|.++ .+..|... ..|+.+. -|..+|.+++|..++..|
T Consensus 68 ~~R~~alval---~v~~P~~~-------~~~L~~~-f~~~~~Sl~qR~~iL~~l 110 (114)
T PF10193_consen 68 ELRQNALVAL---VVAAPEKV-------APYLTEE-FFSGDYSLQQRMSILSAL 110 (114)
T ss_dssp HHHHHHHHHH---HHHSGGGH-------HH-HHHH-HTTS---THHHHHHHHHH
T ss_pred HHHHHHHHHH---HHHhhHHH-------HHHHHHH-HhcCCCCHHHHHHHHHHH
Confidence 4555555554 45667532 2222222 266788899998877765
No 248
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=20.59 E-value=1.8e+02 Score=22.12 Aligned_cols=27 Identities=19% Similarity=0.353 Sum_probs=22.8
Q ss_pred HHHHHHhhccCChhHHHHHHHHHHHHH
Q 002667 315 FKEFQDYIRDPDRRFAADTVAAIGLCA 341 (895)
Q Consensus 315 L~EL~~Yv~~~D~ef~~~aI~AIG~~A 341 (895)
+.-|...+++.|.+++..++.||+.++
T Consensus 14 i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 14 IPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 445677778899999999999999886
No 249
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=20.45 E-value=8.4e+02 Score=31.47 Aligned_cols=103 Identities=16% Similarity=0.190 Sum_probs=72.9
Q ss_pred HHHHHHHHHhcCC--CcchHHHHHHHHHHHHhCCccccccccccee----ccCCc-HHHHHHHHHHHHhhcCCCCHHHHH
Q 002667 243 RIVKPLLFILRSS--GASKYVVLCNIQVFAKALPHLFVPHYEDFFV----SSSDS-YQSKALKLEILSSIVTESSISSVF 315 (895)
Q Consensus 243 ~~~~pLv~LL~s~--~eiqyvvL~~I~~i~~~~p~lF~~~l~~Ffi----~~sDp-~~IK~lKLeIL~~Lane~Nv~~IL 315 (895)
.+...++.....+ -++.-+++..|..|+...+..|.+|...-|- +..|- ..++.--+.++-..++..+...+.
T Consensus 294 ~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~l~~~~ 373 (815)
T KOG1820|consen 294 GLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNSTPLSKMS 373 (815)
T ss_pred hHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhcccHHHHH
Confidence 3445555554444 4566677778999999888889998765443 33332 467777778888888888888888
Q ss_pred HHHHHhhccCChhHHHHHHHHHHHHHhhCc
Q 002667 316 KEFQDYIRDPDRRFAADTVAAIGLCARKLP 345 (895)
Q Consensus 316 ~EL~~Yv~~~D~ef~~~aI~AIG~~A~~~p 345 (895)
+.+...+++-+..++...-...++|-.++.
T Consensus 374 ~~I~e~lk~knp~~k~~~~~~l~r~~~~~~ 403 (815)
T KOG1820|consen 374 EAILEALKGKNPQIKGECLLLLDRKLRKLG 403 (815)
T ss_pred HHHHHHhcCCChhhHHHHHHHHHHHHhhcC
Confidence 888888888787777777777777666655
No 250
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=20.42 E-value=1.7e+03 Score=27.60 Aligned_cols=113 Identities=14% Similarity=0.140 Sum_probs=76.3
Q ss_pred CCCccchhhhHHHHHHHHhhcCCCCchhhHHHHHHHHHHhccCCcchhHHHHHHHHHHhcCCCh--hHHHHHHHHHHHhC
Q 002667 1 MAGIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSP--GVVGAAAAAFASIC 78 (895)
Q Consensus 1 MssIRv~~I~piv~~aIkk~l~D~SPYVRK~AA~AI~Kly~ld~pd~~~~L~eil~~LL~D~~p--~VvgsAv~Af~EIc 78 (895)
+|+.||.+=.|..+.-+.+-+..+|.-.|-+|.+++.-.|.=. +.+++.++|.-+..+.+. .|+.=|..++-.|+
T Consensus 439 ~s~~~v~~E~~palalLs~yl~s~s~k~~~aaiLGlg~afsGt---~~eevl~lL~Pi~~std~pie~~~~asltLg~vF 515 (881)
T COG5110 439 LSGLRVFEERPPALALLSNYLQSSSSKHVIAAILGLGAAFSGT---QAEEVLELLQPIMFSTDSPIEVVFFASLTLGSVF 515 (881)
T ss_pred ecccccccccchHHHHHHHhccCCchHHHHHHHhhhHHhhcCC---cHHHHHHHhhhhhcCCCCcHHHHHHHHHhhhheE
Confidence 4788999999999999999999999999999999999888754 567777777777655554 33333333444442
Q ss_pred -CC-CccchHHHHHHHHHh--CCCCChhhHHHHHHHHHhhhh
Q 002667 79 -PN-NFTLIGRNYRNLCQI--LPDVEEWGQILLIEILLRYVV 116 (895)
Q Consensus 79 -P~-r~dLihk~yrkLc~~--L~d~dEWgQv~iL~lL~rY~r 116 (895)
.. +-|+..-....++.. +..-+.|+.-..|.+-.-|-+
T Consensus 516 vGtcngD~ts~ilqtf~Er~~~e~~tqw~RFlaLgLa~Lf~g 557 (881)
T COG5110 516 VGTCNGDLTSLILQTFVERGKIESETQWFRFLALGLASLFYG 557 (881)
T ss_pred eeccCchHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHcc
Confidence 11 123322222333332 345688999888888655543
No 251
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=20.32 E-value=9e+02 Score=28.30 Aligned_cols=123 Identities=19% Similarity=0.245 Sum_probs=56.8
Q ss_pred HHHHHHhhCCcchHHHHHHHHHhhhccCchhhHHhhhhhhccccCCCC--CccchHHHHHHHHHHhhccCcHHHHHHHHH
Q 002667 384 SIKSIIKQDPSCHEKVIIQLFRSLDSIKVPEARVMIIWMVGEYSSVGV--KIPRMLTTVLKYLAWCFKSEAVETKLQILN 461 (895)
Q Consensus 384 vik~Llq~~P~~~~~ii~~L~~~ld~i~~p~ArAsIiWLLGEY~~~~e--~ip~ia~dvLr~l~k~F~~E~~~VKlqILt 461 (895)
.+...+.++|.....++..|.++...- .+.=....+-.+++-....+ ....+...+++.+++....++-.|=-..|.
T Consensus 241 ~~~~f~~kdp~l~~~~i~~llk~WP~t-~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~ 319 (409)
T PF01603_consen 241 CVVQFLEKDPSLAEPVIKGLLKHWPKT-NSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSPHFQVAERALY 319 (409)
T ss_dssp HHHHHHHH-GGGHHHHHHHHHHHS-SS--HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHG
T ss_pred HHHHHHHhCchhHHHHHHHHHHhCCCC-CchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 444556667776666666666666532 22111111222222211111 112345566777777766666554333332
Q ss_pred HH-----HHHhhhcCCCChHHHHHHHHHHHHHHccCCChHHHhHHHHHHHHccC
Q 002667 462 TT-----IKVLLCAKGGDMWTITRLFSYLLELAECDLNYDVRDRARFFKKLFSH 510 (895)
Q Consensus 462 aa-----aKL~~~~p~e~~~~l~~L~qyvL~la~~D~n~DVRDRAr~y~~LL~~ 510 (895)
.. ..++..+. ...+..++..+.+.++..=|..||+.|.-..++|..
T Consensus 320 ~w~n~~~~~li~~~~---~~i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~ 370 (409)
T PF01603_consen 320 FWNNEYFLSLISQNS---RVILPIIFPALYRNSKNHWNQTVRNLAQNVLKILME 370 (409)
T ss_dssp GGGSHHHHHHHHCTH---HHHHHHHHHHHSSTTSS-SSTTHHHHHHHHHHHHHT
T ss_pred HHCCHHHHHHHHhCh---HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 21 11111111 112333444333334444488899999888888864
No 252
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=20.31 E-value=9.9e+02 Score=30.12 Aligned_cols=135 Identities=16% Similarity=0.178 Sum_probs=74.5
Q ss_pred HHHhhhhhccCCCh--HHHHHHHHHHHhcCCHH-HHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhCCc-cc----ccc
Q 002667 209 LLQCTSPLLWSHNS--AVVLAAAGVHWIMSPKE-DVKRIVKPLLFILRSSGASKYVVLCNIQVFAKALPH-LF----VPH 280 (895)
Q Consensus 209 LL~~~~pLLqS~Ns--AVVlaaa~l~~~lap~~-~l~~~~~pLv~LL~s~~eiqyvvL~~I~~i~~~~p~-lF----~~~ 280 (895)
-|+-+.++.+-.|. +..+.+..-.|---|.. -+.++..+|+..|.+ ....=++|-.+..|....+. -| .|+
T Consensus 275 aLrfLD~l~~kdn~qKs~Flk~Ls~~ip~fp~rv~~~kiLP~L~~el~n-~~~vp~~LP~v~~i~~~~s~~~~~~~~~p~ 353 (700)
T KOG2137|consen 275 ALRFLDDLPQKDNSQKSSFLKGLSKLIPTFPARVLFQKILPTLVAELVN-TKMVPIVLPLVLLIAEGLSQNEFGPKMLPA 353 (700)
T ss_pred hhhhcccccccCcHHHHHHHHHHHHhhccCCHHHHHHhhhhHHHHHhcc-ccccccccchhhhhhhccchhhhhhhhhHH
Confidence 46677777774443 66776644444333433 456777778877743 33444567777777665442 22 234
Q ss_pred cccceeccCCcH---HHHHHHHHHHHhhcCCCCHH-HHHHHHHHhhccCChhHHHHHHHHHHHHHhhCc
Q 002667 281 YEDFFVSSSDSY---QSKALKLEILSSIVTESSIS-SVFKEFQDYIRDPDRRFAADTVAAIGLCARKLP 345 (895)
Q Consensus 281 l~~Ffi~~sDp~---~IK~lKLeIL~~Lane~Nv~-~IL~EL~~Yv~~~D~ef~~~aI~AIG~~A~~~p 345 (895)
++..|-. .|+. -+-..|+|+|..-+..+-+. .|+.=|..-..+.+..+...+++.++.+|..++
T Consensus 354 l~pi~~~-~~~~~~~l~i~e~mdlL~~Kt~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD 421 (700)
T KOG2137|consen 354 LKPIYSA-SDPKQALLFILENMDLLKEKTPPEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESID 421 (700)
T ss_pred HHHHhcc-CCcccchhhHHhhHHHHHhhCChHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc
Confidence 4333322 4443 34445566665555544443 344433333345566677777788888777664
No 253
>KOG2959 consensus Transcriptional regulator [Transcription]
Probab=20.26 E-value=1.9e+02 Score=30.54 Aligned_cols=6 Identities=0% Similarity=-0.203 Sum_probs=2.4
Q ss_pred CCCCCC
Q 002667 602 WTGSSS 607 (895)
Q Consensus 602 ~~~s~s 607 (895)
++.+|-
T Consensus 40 ~~~~Dt 45 (238)
T KOG2959|consen 40 SYQDDT 45 (238)
T ss_pred cccccc
Confidence 344443
No 254
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=20.24 E-value=2.9e+02 Score=32.82 Aligned_cols=71 Identities=15% Similarity=0.236 Sum_probs=51.0
Q ss_pred HHHHHHHHhhccCChhHHHHHHHHHHHHHhhCcchH----HHHHHHHHHHHHhhhccccccCCCCCCchhhhHHHHHHHH
Q 002667 313 SVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMA----NTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSI 388 (895)
Q Consensus 313 ~IL~EL~~Yv~~~D~ef~~~aI~AIG~~A~~~p~~a----~~cl~~Ll~LLs~~~~~~~~~~~~~~~~vv~E~V~vik~L 388 (895)
.+++-+..++++.|.+.....+-|||..|.+-..+. ...++-|+++|-.+.. ++|+-.+..-++..+|++
T Consensus 315 ~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~------vdgnV~~qhA~lsALRnl 388 (604)
T KOG4500|consen 315 QFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKD------VDGNVERQHACLSALRNL 388 (604)
T ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcC------CCccchhHHHHHHHHHhc
Confidence 488888999999999999999999999998865433 4778888888865321 133322344455667766
Q ss_pred H
Q 002667 389 I 389 (895)
Q Consensus 389 l 389 (895)
+
T Consensus 389 ~ 389 (604)
T KOG4500|consen 389 M 389 (604)
T ss_pred c
Confidence 4
No 255
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=20.24 E-value=1.3e+03 Score=29.56 Aligned_cols=143 Identities=18% Similarity=0.264 Sum_probs=78.2
Q ss_pred HHHHHHHhhCcchHHHHHHHHHHHHHhhhccccccCCCCCCchhhhHHHHHHHHHhhC--CcchHHHHHHHHHhhhccCc
Q 002667 335 AAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQD--PSCHEKVIIQLFRSLDSIKV 412 (895)
Q Consensus 335 ~AIG~~A~~~p~~a~~cl~~Ll~LLs~~~~~~~~~~~~~~~~vv~E~V~vik~Llq~~--P~~~~~ii~~L~~~ld~i~~ 412 (895)
.|+-.+.+.-|--+-..|..|+.+.+.. + ...+.+++..|+.|+-+. |++ +.....-+.+..+..
T Consensus 215 tA~~LlvqesPvh~lk~lEtLls~c~KK----------s-k~~a~~~l~~LkdlfI~~LLPdR--KLk~f~qrp~~~l~~ 281 (988)
T KOG2038|consen 215 TAMTLLVQESPVHNLKSLETLLSSCKKK----------S-KRDALQALPALKDLFINGLLPDR--KLKYFSQRPLLELTN 281 (988)
T ss_pred HHHHHhhcccchhHHHHHHHHHHHHhhh----------h-HHHHHHHHHHHHHHHHhccCcch--hhHHHhhChhhhccc
Confidence 3443444444555557777777776531 1 124667777888887653 662 222222223333332
Q ss_pred hh--hHHhhhhhhccccCCCCCccchHHHHHHHHHHhhcc--------CcHHHHHHHHHHHHHHhhhcCCCChHHHHHHH
Q 002667 413 PE--ARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKS--------EAVETKLQILNTTIKVLLCAKGGDMWTITRLF 482 (895)
Q Consensus 413 p~--ArAsIiWLLGEY~~~~e~ip~ia~dvLr~l~k~F~~--------E~~~VKlqILtaaaKL~~~~p~e~~~~l~~L~ 482 (895)
-. -|.-++|-. ++.|.+++.+|.+ -=.+||.++|+.+.-++...|++....+..++
T Consensus 282 ~~~~~k~Ll~Wyf--------------E~~LK~ly~rfievLe~lS~D~L~~vk~raL~ti~~lL~~kPEqE~~LL~~lV 347 (988)
T KOG2038|consen 282 KRLRDKILLMWYF--------------EHELKILYFRFIEVLEELSKDPLEEVKKRALKTIYDLLTNKPEQENNLLVLLV 347 (988)
T ss_pred cccccceehHHHH--------------HHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 22 223345643 3445555555532 22579999999999999888875433333333
Q ss_pred HHHHHHHccCCChHHHhHHHHH-HHHcc
Q 002667 483 SYLLELAECDLNYDVRDRARFF-KKLFS 509 (895)
Q Consensus 483 qyvL~la~~D~n~DVRDRAr~y-~~LL~ 509 (895)
. ..-|.++-|-..|-+. ..|+.
T Consensus 348 N-----KlGDpqnKiaskAsylL~~L~~ 370 (988)
T KOG2038|consen 348 N-----KLGDPQNKIASKASYLLEGLLA 370 (988)
T ss_pred H-----hcCCcchhhhhhHHHHHHHHHh
Confidence 2 2257777777777554 44443
No 256
>PRK10941 hypothetical protein; Provisional
Probab=20.12 E-value=2.3e+02 Score=31.41 Aligned_cols=33 Identities=24% Similarity=0.377 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHccCCChHHHhHHHHHHHHccC
Q 002667 477 TITRLFSYLLELAECDLNYDVRDRARFFKKLFSH 510 (895)
Q Consensus 477 ~l~~L~qyvL~la~~D~n~DVRDRAr~y~~LL~~ 510 (895)
..-+..+.++.+.- |.-+++|||+..|.+|=-.
T Consensus 199 ~AL~~~e~ll~l~P-~dp~e~RDRGll~~qL~c~ 231 (269)
T PRK10941 199 LALRASEALLQFDP-EDPYEIRDRGLIYAQLDCE 231 (269)
T ss_pred HHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCc
Confidence 34455666666533 3358999999999988543
Done!