Query 002667
Match_columns 895
No_of_seqs 254 out of 844
Neff 6.0
Searched_HMMs 29240
Date Tue Mar 26 17:55:43 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002667.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1384-1388//hhsearch_pdb/002667hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vgl_A Adaptor protein complex 1.0 1 1 530.4 20.8 432 1-546 135-607 (621)
2 2vgl_B AP-2 complex subunit be 1.0 1 1 529.2 41.4 446 1-568 110-578 (591)
3 1w63_A Adapter-related protein 1.0 1 1 475.2 33.1 442 1-569 131-609 (618)
4 3tjz_B Coatomer subunit gamma; 1.0 1 1 218.4 8.2 220 1-308 128-354 (355)
5 2g30_A AP-2 complex subunit be 1.0 1 1 124.2 14.6 139 725-890 28-174 (258)
6 2vgl_B AP-2 complex subunit be 1.0 1 1 106.3 22.6 389 14-511 51-456 (591)
7 1b3u_A Protein (protein phosph 1.0 1 1 105.3 22.5 138 208-345 164-313 (588)
8 1w63_A Adapter-related protein 1.0 1 1 101.8 21.7 91 19-112 77-167 (618)
9 4fdd_A Transportin-1; heat rep 1.0 1 1 98.6 31.5 270 206-488 172-491 (852)
10 4fdd_A Transportin-1; heat rep 1.0 1 1 98.1 31.8 37 308-344 354-390 (852)
No 1
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=1.00 E-value=1 Score=530.37 Aligned_cols=432 Identities=17% Similarity=0.222 Sum_probs=362.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 987450031588999999621--8999015699999999874038821067--899999988229992189999999999
Q 002667 1 MAGIRLHVISPLVLVAVGKCA--RDPSVFVRKCAANALPKLHELRQEEITS--AIEEIVGILLNDRSPGVVGAAAAAFAS 76 (895)
Q Consensus 1 MssIRvp~I~piv~~aIkk~l--~D~sPYVRK~AA~AI~Kly~ld~pe~~~--~L~eil~~LL~D~dp~VvgsAi~Al~E 76 (895)
||+|+.|++++.++.+|++++ .|++|||||+||+|+.|+|+++ |+..+ .+.+.+..||+|+||+|+++|+.++.+
T Consensus 135 L~~i~~~e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~-p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~ 213 (621)
T 2vgl_A 135 IANVGSREMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTS-PDLVPMGDWTSRVVHLLNDQHLGVVTAATSLITT 213 (621)
T ss_dssp HHHHCCHHHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHC-GGGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred HHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC-HHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf 665597999999999999998179997799999999999999749-1005712399999998479980299999999999
Q ss_pred HCCCCC----CCHHHHHHHHHHHCC--CC-----------CHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCC
Q ss_conf 598972----224899999997489--99-----------9224999999999622101366420111122110257874
Q 002667 77 ICPNNF----TLIGRNYRNLCQILP--DV-----------EEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSE 139 (895)
Q Consensus 77 IcP~r~----~Lih~~yrkLc~~L~--d~-----------dEWgQv~iL~lL~rY~r~~~~~~~ps~mf~~~~~~~~~~~ 139 (895)
+|+++. .++++.++.|++++. ++ +||+|+.+|++|.+|++... |..
T Consensus 214 i~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d----~~~------------- 276 (621)
T 2vgl_A 214 LAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPED----PAV------------- 276 (621)
T ss_dssp HHHHCHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSS----HHH-------------
T ss_pred HHHHCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHCCCCC----HHH-------------
T ss_conf 999696989988899999999998678998620011589996399999999987288888----899-------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH--H--
Q ss_conf 110000000113899997664012332100000254321235777555566655764468988746999999631--1--
Q 002667 140 KDVFDVNVALEDNGIPSRTYDSELVNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTS--P-- 215 (895)
Q Consensus 140 e~~~~~~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~d~D~~lLL~~~~--p-- 215 (895)
.. .+.+.+..+++.+. |
T Consensus 277 ---~~--------------------------------------------------------~l~~~L~~il~~~~~~~ks 297 (621)
T 2vgl_A 277 ---RG--------------------------------------------------------RLTECLETILNKAQEPPKS 297 (621)
T ss_dssp ---HH--------------------------------------------------------HHHHHHHHHHHHHHSCCSC
T ss_pred ---HH--------------------------------------------------------HHHHHHHHHHHHHCCCCCC
T ss_conf ---99--------------------------------------------------------9999999999861347643
Q ss_pred -HCCCCCH--HHHHHHHHHHHHCCCH-HHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHHCC--CCCCCCCCCCEE-C
Q ss_conf -0048994--9999999999936997-889998999998732-788615889999999997699--620100030042-3
Q 002667 216 -LLWSHNS--AVVLAAAGVHWIMSPK-EDVKRIVKPLLFILR-SSGASKYVVLCNIQVFAKALP--HLFVPHYEDFFV-S 287 (895)
Q Consensus 216 -LLqS~Ns--AVVlaaa~l~~~lap~-~~l~~i~~~Li~LL~-S~~eiqyvvL~~I~~l~~~~p--~lF~~~lk~Ffv-~ 287 (895)
.|+|+|+ ||+++|+++++++.+. ..+..++++|.++|. +++|+||++|++|..|+...| ..|.+|...|+. +
T Consensus 298 ~~l~~~n~~~aVl~ea~~~i~~l~~~~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~~~~~~~~~i~~~L 377 (621)
T 2vgl_A 298 KKVQHSNAKNAVLFEAISLIIHHDSEPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAVKTHIETVINAL 377 (621)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHHHHHTTHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 45343423888999999999964884999999999999985489932599999999999843685799999999999996
Q ss_pred C-CCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf 6-894879999999998613887799999999993304983499999999999996195008999999999987321026
Q 002667 288 S-SDSYQSKALKLEILSSIVTESSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTS 366 (895)
Q Consensus 288 ~-~Dp~~IK~lKLeIL~~Lane~Nv~~IL~EL~~Y~~~~D~~f~~~aI~AIG~lA~k~p~~a~~cl~~Ll~LLs~~~~~~ 366 (895)
. +++.+||++||++|+.|+|++|+..|++||..|+.+.|.+|+.++|++||.||.+++..+.||+++|+++++..
T Consensus 378 ~~d~d~~Ir~~aL~lL~~l~~~~Nv~~Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k~~~~~~~~v~~Ll~ll~~~---- 453 (621)
T 2vgl_A 378 KTERDVSVRQRAVDLLYAMCDRSNAQQIVAEMLSYLETADYSIREEIVLKVAILAEKYAVDYTWYVDTILNLIRIA---- 453 (621)
T ss_dssp TTCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHH----
T ss_pred CCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH----
T ss_conf 5699875999999999998085359999999999998668888999999999999866896899999999999860----
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHH----HHHCCCCCCCCCCCCHHH-HHH
Q ss_conf 656789987303658999999996099544999999999630047034688666----420355678787622089-999
Q 002667 367 DIESGNGEADVLIQSIISIKSIIKQDPSCHEKVIIQLFRSLDSIKVPEARVMII----WMVGEYSSVGVKIPRMLT-TVL 441 (895)
Q Consensus 367 ~~~~~~~~~~vV~EsV~vik~Liq~~p~~~~~ii~~L~~~ld~I~~p~ArasIi----WLIGEY~~~~e~ip~ia~-dvL 441 (895)
+..+..|++.+++++++++|+.+..++.+|+..+. +|.++++++ |+|||||+.++..+++.| +++
T Consensus 454 -------~~~v~~ev~~~l~~ii~~~~~~~~~~~~~l~~~l~---~~~~~~~li~~~~wilGEy~~~~~~~~~~~p~~~l 523 (621)
T 2vgl_A 454 -------GDYVSEEVWYRVIQIVINRDDVQGYAAKTVFEALQ---APACHENLVKVGGYILGEFGNLIAGDPRSSPLIQF 523 (621)
T ss_dssp -------GGGSCSHHHHHHHHHHGGGCSCHHHHHHHHHHHHT---SSSCCHHHHHHHHHHHHHHTHHHHSSTTSCHHHHH
T ss_pred -------CCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHC---CCCCHHHHHHHHHHHHCCHHHHHCCCCCCCHHHHH
T ss_conf -------42136999999999973876699999999999873---85334999999999964448774146777778999
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 99997310470999999999999986625798847999999999998702--9995798689999997058978988631
Q 002667 442 KYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTITRLFSYLLELAEC--DLNYDVRDRARFFKKLFSHNLCSQVPEE 519 (895)
Q Consensus 442 r~l~k~F~~E~~~VKlqILta~aKL~~~~p~e~~~~~~~l~qyvLela~~--D~n~DVRDRAr~y~~LL~~~~~~~~~~~ 519 (895)
+.+.++|..|+..||+++||+++|++.+.|+ ....++++|+.+++ |.|+||||||++||+|+..+..
T Consensus 524 ~~l~~~~~~~~~~v~~~~Lta~~Kl~~~~p~-----~~~~i~~~l~~~~~~~~~d~evrdRA~~y~~Ll~~~~~------ 592 (621)
T 2vgl_A 524 NLLHSKFHLCSVPTRALLLSTYIKFVNLFPE-----VKATIQDVLRSDSQLKNADVELQQRAVEYLRLSTVAST------ 592 (621)
T ss_dssp HHHHHHHTTSCHHHHHHHHHHHHHHHHHCGG-----GHHHHHHHHSSHHHHSCSSHHHHHHHHHHHHHHHSSCS------
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHCHH-----HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHH------
T ss_conf 9999875348877999999999999987747-----89999999999705899897999999999999856999------
Q ss_pred HHHHHCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf 011101686038989854026988788
Q 002667 520 TNALQENKDLPLVLVECIFRKQENLAA 546 (895)
Q Consensus 520 ~~~~~~~~~~~~~la~~if~~~~p~~~ 546 (895)
.+.+.++.++||++.
T Consensus 593 ------------~~~~~vl~~~P~~~~ 607 (621)
T 2vgl_A 593 ------------DILATVLEEMPPFPE 607 (621)
T ss_dssp ------------TTTTTTSSSCCCCCC
T ss_pred ------------HHHHHHHHCCCCCCC
T ss_conf ------------999888513898997
No 2
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=1.00 E-value=1 Score=529.22 Aligned_cols=446 Identities=28% Similarity=0.458 Sum_probs=391.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHHCCCCHHHHHHHHHHHHHHC
Q ss_conf 9874500315889999996218999015699999999874038821067--89999998822999218999999999959
Q 002667 1 MAGIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITS--AIEEIVGILLNDRSPGVVGAAAAAFASIC 78 (895)
Q Consensus 1 MssIRvp~I~piv~~aIkk~l~D~sPYVRK~AA~AI~Kly~ld~pe~~~--~L~eil~~LL~D~dp~VvgsAi~Al~EIc 78 (895)
|++|+.+++.+.++.+|++++.|++|||||+||.|+.|+|+.+ |+..+ .+.+.+..+|.|+++.|..+|+.++.++|
T Consensus 110 L~~i~~~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~-p~~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~ 188 (591)
T 2vgl_B 110 MGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDIN-AQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEIS 188 (591)
T ss_dssp HHTCCSGGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSS-CCCHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHT
T ss_pred HHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC-HHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 8758907789999999999817998589999999999998519-241446358999999967998439999999999997
Q ss_pred CCC-----CCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 897-----222489999999748999922499999999962210136642011112211025787411000000011389
Q 002667 79 PNN-----FTLIGRNYRNLCQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNG 153 (895)
Q Consensus 79 P~r-----~~Lih~~yrkLc~~L~d~dEWgQv~iL~lL~rY~r~~~~~~~ps~mf~~~~~~~~~~~e~~~~~~~~l~~q~ 153 (895)
++. +++.++.+++|++.+.+.+||+|+.++++|.+|++..
T Consensus 189 ~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~----------------------------------- 233 (591)
T 2vgl_B 189 ESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKD----------------------------------- 233 (591)
T ss_dssp TSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCS-----------------------------------
T ss_pred HHCCCCCCHHCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCC-----------------------------------
T ss_conf 637875404426999999987488788257899999999867998-----------------------------------
Q ss_pred CCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 99976640123321000002543212357775555666557644689887469999996311004899499999999999
Q 002667 154 IPSRTYDSELVNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHW 233 (895)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~d~D~~lLL~~~~pLLqS~NsAVVlaaa~l~~ 233 (895)
+++...+++.+.++|++.|++|+++|++++.
T Consensus 234 -------------------------------------------------~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~ 264 (591)
T 2vgl_B 234 -------------------------------------------------DREAQSICERVTPRLSHANSAVVLSAVKVLM 264 (591)
T ss_dssp -------------------------------------------------HHHHHHHHHHHTTCSCSSTTHHHHHHHHHHH
T ss_pred -------------------------------------------------HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf -------------------------------------------------5999999999999875898499999999999
Q ss_pred HCCC-----HHH----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEECCCCCHHHHHHHHHHHHH
Q ss_conf 3699-----788----9998999998732788615889999999997699620100030042368948799999999986
Q 002667 234 IMSP-----KED----VKRIVKPLLFILRSSGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKLEILSS 304 (895)
Q Consensus 234 ~lap-----~~~----l~~i~~~Li~LL~S~~eiqyvvL~~I~~l~~~~p~lF~~~lk~Ffv~~~Dp~~IK~lKLeIL~~ 304 (895)
++.+ ++. +.+++.+|++|+++++|+||++|.+|..++..+|..|.+|++.|+|+++||.+||+.||++|+.
T Consensus 265 ~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~~ 344 (591)
T 2vgl_B 265 KFLELLPKDSDYYNMLLKKLAPPLVTLLSGEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIR 344 (591)
T ss_dssp HSCCSCCBTTBSHHHHHHHTHHHHHHHTTSCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHHH
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHEECCCCHHHHHHHHHHHHHH
T ss_conf 97402478879999999999999999966992089999999999998696989998875500369939999999999998
Q ss_pred HCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 13887799999999993304983499999999999996195008999999999987321026656789987303658999
Q 002667 305 IVTESSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIIS 384 (895)
Q Consensus 305 Lane~Nv~~IL~EL~~Y~~~~D~~f~~~aI~AIG~lA~k~p~~a~~cl~~Ll~LLs~~~~~~~~~~~~~~~~vV~EsV~v 384 (895)
+++++|+..|++||.+|+.+.|.+|+.+++++||.||.+++..+.||++.|+++++. .+..++.+++.+
T Consensus 345 l~~~~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~~~~~v~~Ll~ll~~-----------~~~~v~~e~i~~ 413 (591)
T 2vgl_B 345 LASQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQT-----------KVNYVVQEAIVV 413 (591)
T ss_dssp TCCSSTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT-----------CCHHHHHHHHHH
T ss_pred HCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCC-----------CCHHHHHHHHHH
T ss_conf 778623999999999998657999999999999999985746799999999999835-----------516899999999
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 99999609954499999999963004703468866642035567878762208999999997310470999999999999
Q 002667 385 IKSIIKQDPSCHEKVIIQLFRSLDSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTI 464 (895)
Q Consensus 385 ik~Liq~~p~~~~~ii~~L~~~ld~I~~p~ArasIiWLIGEY~~~~e~ip~ia~dvLr~l~k~F~~E~~~VKlqILta~a 464 (895)
+++|++++|+.+..++.+|++.++.+.+|.++++++|+|||||+.. +. .+++++.++++|..|+..||+++|++++
T Consensus 414 l~~ii~~~p~~~~~~v~~L~~~l~~~~~~~~~~~~~wilGey~~~~---~~-~~~~l~~l~~~~~~~~~~vr~~~l~a~~ 489 (591)
T 2vgl_B 414 IRDIFRKYPNKYESIIATLCENLDSLDEPDARAAMIWIVGEYAERI---DN-ADELLESFLEGFHDESTQVQLTLLTAIV 489 (591)
T ss_dssp HHHHHHHSCSSCCTTHHHHHHTTTTCCSHHHHHHHHHHHHTTCTTC---TT-HHHHHHHHSTTCSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCC---CC-HHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 9999997920578999999988874237899999999997031213---67-8999999998664598889999999999
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHCCCCC
Q ss_conf 9866257988479999999999987029-995798689999997058978988631011101686038989854026988
Q 002667 465 KVLLCAKGGDMWTITRLFSYLLELAECD-LNYDVRDRARFFKKLFSHNLCSQVPEETNALQENKDLPLVLVECIFRKQEN 543 (895)
Q Consensus 465 KL~~~~p~e~~~~~~~l~qyvLela~~D-~n~DVRDRAr~y~~LL~~~~~~~~~~~~~~~~~~~~~~~~la~~if~~~~p 543 (895)
|++.+.|++. ..+++++|+.+++| .|+||||||++|++|+..+. + ...+.++.++|+
T Consensus 490 Kl~~~~p~~~----~~~i~~ll~~~~~d~~d~evrdRA~~y~~ll~~~~---------------~---~~~~~v~~~~p~ 547 (591)
T 2vgl_B 490 KLFLKKPSET----QELVQQVLSLATQDSDNPDLRDRGYIYWRLLSTDP---------------V---TAKEVVLSEKPL 547 (591)
T ss_dssp HHHTTCCSTT----HHHHHHHHHHHHTTCCCHHHHHHHHHHHTTTTTCT---------------T---HHHHHHTSCCCC
T ss_pred HHHHCCCHHH----HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCH---------------H---HHHHHHCCCCCC
T ss_conf 9996196579----99999999986535899679999999999977498---------------9---999987489999
Q ss_pred CCCCCCCC-C-----CCCCCCCHHHHHHCCC
Q ss_conf 78899977-6-----5767875789842118
Q 002667 544 LAASEPIN-D-----RFYLPGSLSQIVLHAA 568 (895)
Q Consensus 544 ~~~~~~~~-~-----r~~~lGSLS~~~~~~~ 568 (895)
++..++.. . ...++||||++++.+.
T Consensus 548 ~~~~~~~~~~~~~~~~~~~~~tl~~~~~~~~ 578 (591)
T 2vgl_B 548 ISEETDLIEPTLLDELICHIGSLASVYHKPP 578 (591)
T ss_dssp CCSCSSCCCHHHHHHHHTTTTSSHHHHTSCG
T ss_pred CCCCCCCCCHHHHHHHHHHHCCCHHHHCCCH
T ss_conf 9978432477899999987385155525789
No 3
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=1.00 E-value=1 Score=475.15 Aligned_cols=442 Identities=14% Similarity=0.167 Sum_probs=360.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 98745003158899999962189990156999999998740388210678999999882299921899999999995989
Q 002667 1 MAGIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPN 80 (895)
Q Consensus 1 MssIRvp~I~piv~~aIkk~l~D~sPYVRK~AA~AI~Kly~ld~pe~~~~L~eil~~LL~D~dp~VvgsAi~Al~EIcP~ 80 (895)
||+|+.+++++.++..|++++.|++|||||+||+|+.|+|+.+ |+..+.+.+.+..+|+|+|+.|+++|+.++.++|+.
T Consensus 131 L~~i~~~~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~-p~~v~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~ 209 (618)
T 1w63_A 131 LGCMGSSEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKV-PELMEMFLPATKNLLNEKNHGVLHTSVVLLTEMCER 209 (618)
T ss_dssp HHHHCCHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHC-GGGGGGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCS
T ss_pred HHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf 8862989999999999999975998799999999999999879-587999999999982799773999999999999983
Q ss_pred CCCCHHHHH----HHHHHHCCC---------------CCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCC
Q ss_conf 722248999----999974899---------------9922499999999962210136642011112211025787411
Q 002667 81 NFTLIGRNY----RNLCQILPD---------------VEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKD 141 (895)
Q Consensus 81 r~~Lih~~y----rkLc~~L~d---------------~dEWgQv~iL~lL~rY~r~~~~~~~ps~mf~~~~~~~~~~~e~ 141 (895)
..++ +.+| ..|+++|.+ .+||+|+.++++|.+|++.. |.. .
T Consensus 210 ~~~~-~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~-----~~~------~-------- 269 (618)
T 1w63_A 210 SPDM-LAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRND-----DDS------S-------- 269 (618)
T ss_dssp HHHH-HHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTC-----HHH------H--------
T ss_pred CHHH-HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC-----HHH------H--------
T ss_conf 9588-9999998999999999987279995432268898709999999998738999-----799------9--------
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH--CCC
Q ss_conf 000000011389999766401233210000025432123577755556665576446898874699999963110--048
Q 002667 142 VFDVNVALEDNGIPSRTYDSELVNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPL--LWS 219 (895)
Q Consensus 142 ~~~~~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~d~D~~lLL~~~~pL--LqS 219 (895)
+ .-...|.+.+.+. +++
T Consensus 270 ----------------------------------~---------------------------~~~~~L~~l~~~~~~~~~ 288 (618)
T 1w63_A 270 ----------------------------------E---------------------------AMNDILAQVATNTETSKN 288 (618)
T ss_dssp ----------------------------------H---------------------------TTHHHHHHHHHTSCCSST
T ss_pred ----------------------------------H---------------------------HHHHHHHHHHHCCCCCCC
T ss_conf ----------------------------------9---------------------------999999999735645554
Q ss_pred CCHHHHHHHHHHHHHCCCHH-HHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHHCCCCCCCCCC-CCEECCCCCHHHHH
Q ss_conf 99499999999999369978-899989999987327-8861588999999999769962010003-00423689487999
Q 002667 220 HNSAVVLAAAGVHWIMSPKE-DVKRIVKPLLFILRS-SGASKYVVLCNIQVFAKALPHLFVPHYE-DFFVSSSDSYQSKA 296 (895)
Q Consensus 220 ~NsAVVlaaa~l~~~lap~~-~l~~i~~~Li~LL~S-~~eiqyvvL~~I~~l~~~~p~lF~~~lk-~Ffv~~~Dp~~IK~ 296 (895)
.|.+|+++|+++++++.+.. ....++.+|++++.+ ++|+||++|.+|..++...|.+|.+|+. .|+|+++++.+||+
T Consensus 289 ~~~aV~~ea~~~i~~l~~~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~~~~~~~~i~~~l~d~d~~Ir~ 368 (618)
T 1w63_A 289 VGNAILYETVLTIMDIKSESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNAVQRHRSTIVDCLKDLDVSIKR 368 (618)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHHHGGGHHHHHHGGGSSCHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCHHHHH
T ss_conf 47899999999999548877999999999999974799743799999999998608899999999999871599966999
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 99999986138877999999999933049834999999999999961950089999999999873210266567899873
Q 002667 297 LKLEILSSIVTESSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEAD 376 (895)
Q Consensus 297 lKLeIL~~Lane~Nv~~IL~EL~~Y~~~~D~~f~~~aI~AIG~lA~k~p~~a~~cl~~Ll~LLs~~~~~~~~~~~~~~~~ 376 (895)
+||++|+.|+++.|+..|++||..|+.+.|.+|+.+++++||+||.+++....||++.|+++++.. +..
T Consensus 369 ~alelL~~l~~~~nv~~iv~eL~~~l~~~d~e~r~~~v~~I~~la~k~~~~~~~~v~~ll~lL~~~-----------~~~ 437 (618)
T 1w63_A 369 RAMELSFALVNGNNIRGMMKELLYFLDSCEPEFKADCASGIFLAAEKYAPSKRWHIDTIMRVLTTA-----------GSY 437 (618)
T ss_dssp HHHHHHHHHCCSSSTHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHT-----------GGG
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-----------CCH
T ss_conf 999999997164119999999999987288999999999999999985750889999999999863-----------531
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC--CCCHHHHHHHHHHHCCCCCCCC-----------CCCCHHHHHHHH
Q ss_conf 036589999999960995449999999996300--4703468866642035567878-----------762208999999
Q 002667 377 VLIQSIISIKSIIKQDPSCHEKVIIQLFRSLDS--IKVPEARVMIIWMVGEYSSVGV-----------KIPRMLTTVLKY 443 (895)
Q Consensus 377 vV~EsV~vik~Liq~~p~~~~~ii~~L~~~ld~--I~~p~ArasIiWLIGEY~~~~e-----------~ip~ia~dvLr~ 443 (895)
+..+++.+++++++++|+.+..++.+|+..+.. ..++.+++ ++|+|||||+.+. ..|..++++|+.
T Consensus 438 v~~~~~~~l~~ii~~~p~l~~~~v~~L~~~l~~~~~~~~~~~~-~~wilGEy~~~i~~~~~~~~~~~~~~~~~~~~~l~~ 516 (618)
T 1w63_A 438 VRDDAVPNLIQLITNSVEMHAYTVQRLYKAILGDYSQQPLVQV-AAWCIGEYGDLLVSGQCEEEEPIQVTEDEVLDILES 516 (618)
T ss_dssp SCSSHHHHHHHHHHHSCSTHHHHHHHHHHHHHHCCSCSHHHHH-HHHHHHHHHHHHTTCCCSSSCCCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHH-HHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 4799999999999568568999999999997452332899999-999982358775146544212457788999999999
Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHH
Q ss_conf 99731047099999999999998662579884799999999999870299957986899999970589789886310111
Q 002667 444 LAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTITRLFSYLLELAECDLNYDVRDRARFFKKLFSHNLCSQVPEETNAL 523 (895)
Q Consensus 444 l~k~F~~E~~~VKlqILta~aKL~~~~p~e~~~~~~~l~qyvLela~~D~n~DVRDRAr~y~~LL~~~~~~~~~~~~~~~ 523 (895)
+++.| .++..||+++|++++|++.+.|+. . ..++.+|+.+..|.|+||||||++||+|+....
T Consensus 517 ~l~~~-~~~~~vr~~~lta~~Kl~~~~~~~-~----~~l~~~L~~~~~~~d~evrdRA~~y~~ll~~~~----------- 579 (618)
T 1w63_A 517 VLISN-MSTSVTRGYALTAIMKLSTRFTCT-V----NRIKKVVSIYGSSIDVELQQRAVEYNALFKKYD----------- 579 (618)
T ss_dssp HHHST-TCCHHHHHHHHHHHHHHHTTCSSC-H----HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTT-----------
T ss_pred HHHCC-CCCHHHHHHHHHHHHHHHHHCCCH-H----HHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCH-----------
T ss_conf 97444-797999999999999999858446-9----999999998358999899999999999980749-----------
Q ss_pred HCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCC
Q ss_conf 0168603898985402698878899977657678757898421189
Q 002667 524 QENKDLPLVLVECIFRKQENLAASEPINDRFYLPGSLSQIVLHAAP 569 (895)
Q Consensus 524 ~~~~~~~~~la~~if~~~~p~~~~~~~~~r~~~lGSLS~~~~~~~~ 569 (895)
.+.+.++.++||++.. ..|.+|++|+|.-.
T Consensus 580 --------~~~~~vl~~~P~~~~~--------~~~~~~~~~~~~~~ 609 (618)
T 1w63_A 580 --------HMRSALLERMPVMEKV--------TTNGPSEIVQTNGE 609 (618)
T ss_dssp --------THHHHHHSCCCCCCC-----------------------
T ss_pred --------HHHHHHHHCCCCCCCC--------CCCCCCCCCCCCCC
T ss_conf --------9998773238999856--------66886533577788
No 4
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=1.00 E-value=1 Score=218.39 Aligned_cols=220 Identities=12% Similarity=0.060 Sum_probs=179.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 98745003158899999962189990156999999998740388210678999999882299921899999999995989
Q 002667 1 MAGIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPN 80 (895)
Q Consensus 1 MssIRvp~I~piv~~aIkk~l~D~sPYVRK~AA~AI~Kly~ld~pe~~~~L~eil~~LL~D~dp~VvgsAi~Al~EIcP~ 80 (895)
||+||.+++++.+...+++|+.|++|||||+|++|+.|+|..+ ||..+.+.+.+..+++|+||+|+.+|+.++.++|..
T Consensus 128 L~~I~~~~m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~-pe~v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~ 206 (355)
T 3tjz_B 128 LCQITDSTMLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCS-FDVVKRWVNEAQEAASSDNIMVQYHALGLLYHVRKN 206 (355)
T ss_dssp HHHHCCTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTC-HHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTT
T ss_pred HHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
T ss_conf 8657978999999999999858998999999999999993368-999999999999996499810899999999999862
Q ss_pred CCCCHHHHHHHHHHHCCCC---CHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 7222489999999748999---9224999999999622101366420111122110257874110000000113899997
Q 002667 81 NFTLIGRNYRNLCQILPDV---EEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSR 157 (895)
Q Consensus 81 r~~Lih~~yrkLc~~L~d~---dEWgQv~iL~lL~rY~r~~~~~~~ps~mf~~~~~~~~~~~e~~~~~~~~l~~q~~~~~ 157 (895)
. ..++.+|...+... +||+|+.+|+++.+|++... |
T Consensus 207 d----~~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~----~--------------------------------- 245 (355)
T 3tjz_B 207 D----RLAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDED----G--------------------------------- 245 (355)
T ss_dssp C----HHHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC-------------------------------------------
T ss_pred C----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCC----H---------------------------------
T ss_conf 6----6889999999766787582899999999998664463----6---------------------------------
Q ss_pred CCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 66401233210000025432123577755556665576446898874699999963110048994999999999993699
Q 002667 158 TYDSELVNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSP 237 (895)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~d~D~~lLL~~~~pLLqS~NsAVVlaaa~l~~~lap 237 (895)
.....+++.+.+.|++.|+||||+|+++++.+..
T Consensus 246 ----------------------------------------------~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~ 279 (355)
T 3tjz_B 246 ----------------------------------------------SRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPG 279 (355)
T ss_dssp ---------------------------------------------------------CCCCCSSHHHHHHHHHHHTC---
T ss_pred ----------------------------------------------HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC
T ss_conf ----------------------------------------------5689999999999828981999999999993658
Q ss_pred --HHHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEECCCCC-HHHHHHHHHHHHHHCCC
Q ss_conf --7889998999998732-78861588999999999769962010003004236894-87999999999861388
Q 002667 238 --KEDVKRIVKPLLFILR-SSGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDS-YQSKALKLEILSSIVTE 308 (895)
Q Consensus 238 --~~~l~~i~~~Li~LL~-S~~eiqyvvL~~I~~l~~~~p~lF~~~lk~Ffv~~~Dp-~~IK~lKLeIL~~Lane 308 (895)
...+..++.+|..+|. +++|+||++|++|..++..+|++++.+-....-+-+|+ ..|..+.+..|..-.+|
T Consensus 280 ~~~~~~~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~~v~~~n~~ie~li~d~n~sI~t~Aittllktg~e 354 (355)
T 3tjz_B 280 CSAKELAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPSAVTACNLDLENLVTDANRSIATLAITTLLKTGSE 354 (355)
T ss_dssp --------CCCTHHHHHHSSSSSSHHHHHHCC-------------------------------------------
T ss_pred CCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 889999999999999976999148999999999999879499999999999870698676999999986313689
No 5
>2g30_A AP-2 complex subunit beta-1; alpha-helical ARH peptide, platform domain, sandwich domain, endocytosis, adaptor, endocytosis/exocytosis complex; 1.60A {Homo sapiens} SCOP: b.1.10.1 d.105.1.1 PDB: 1e42_A 3h1z_A 3hs9_A 2iv9_A 2iv8_A
Probab=1.00 E-value=1 Score=124.23 Aligned_cols=139 Identities=16% Similarity=0.150 Sum_probs=118.7
Q ss_pred CCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEEEEEEECCCCCEEEEEEECCCCCCHHHHHHHHHHHCCCCCCC
Q ss_conf 44675110234557898049998407987899980799999895798750004960244200024555432100244567
Q 002667 725 QVKAKSYTLLDPANGNGLKVYYSFSSEASTISPQLVCLETFFENCSSETMSEVTLVDEESHKALDLADLTLATTASSLTS 804 (895)
Q Consensus 725 ~~~~~~~~LL~~~~g~GL~v~Y~F~r~p~~~~~~mv~v~l~f~N~s~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~ 804 (895)
+++|+ +.+|....|+||.|.|+|.|+ ..+++++++|+|++.++|.++.|.-.+ -.=|+.
T Consensus 28 ~~~p~-~~~l~~~~g~GLeI~g~f~r~-----~g~i~l~l~~~N~s~~~is~faIQfNk---NsFGL~------------ 86 (258)
T 2g30_A 28 YVAPK-AVWLPAVKAKGLEISGTFTHR-----QGHIYMEMNFTNKALQHMTDFAIQFNK---NSFGVI------------ 86 (258)
T ss_dssp CCCCC-EEEECGGGTTTEEEEEEEEEE-----TTEEEEEEEEEECSSSCBCCCEEEECC---BTTCCE------------
T ss_pred CCCCH-HHCCCCCCCCCEEEEEEEEEE-----CCEEEEEEEEECCCCCCEEEEEEEECC---CCCCCC------------
T ss_conf 77832-212465578968999999970-----998999999862774530015899736---654755------------
Q ss_pred CCCCCCCCCCCCC-CCCCCCCEEEEEEEEECCCCCCCC----EEE--EEECCCEEEEEEECCCCCCCCC-CCCCHHHHHH
Q ss_conf 8999975567766-434999714788998638998642----089--9976972115860696322344-2389889999
Q 002667 805 QSDLPTLVPMEEI-TSLEPGQTMKRILEVRFHHHLLPL----KLA--LHCNGKKLPVKLRPDIGYFIKP-VPMDMETFIE 876 (895)
Q Consensus 805 ~~~~~~~~~f~~i-~~l~p~~~~~~~~~i~f~~~~~~~----~~~--l~~~~~~~~v~~~p~vgel~~p-~~m~~~~f~~ 876 (895)
...+..+ ..|+||+++++.+.|+|++..+.+ ++| |+++.+.|++.+.+|+++|+.| ..|+.++|.+
T Consensus 87 ------p~~~~~~~~~L~pgqs~~v~lpl~~~~~~~~~~p~~~LQVAIKtn~~vfYF~~~ipl~~l~~e~g~m~~~~F~~ 160 (258)
T 2g30_A 87 ------PSTPLAIHTPLMPNQSIDVSLPLNTLGPVMKMEPLNNLQVAVKNNIDVFYFSCLIPLNVLFVEDGKMERQVFLA 160 (258)
T ss_dssp ------ESSCCCCCSCBCTTCEEEEEEEEESCSCBCCCSSTTEEEEEEECSSCEEEEEEECCGGGGBCSCCCCCHHHHHH
T ss_pred ------CCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCHHEEEEECCCCEEEEEEECCHHHHCCCCCCCCHHHHHH
T ss_conf ------17412488753899847999866148855678877311033315896499971058899337767669999999
Q ss_pred HHHCCCCCCCCCCC
Q ss_conf 86068983112101
Q 002667 877 MESRLPGMFEYARR 890 (895)
Q Consensus 877 ~~~~l~GM~e~~~~ 890 (895)
....+++|||.+.+
T Consensus 161 ~Wk~ip~~nE~~~~ 174 (258)
T 2g30_A 161 TWKDIPNENELQFQ 174 (258)
T ss_dssp HHHHSCGGGCEEEE
T ss_pred HHHHCCCCCCEEEE
T ss_conf 98648886613685
No 6
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=1.00 E-value=1 Score=106.27 Aligned_cols=389 Identities=11% Similarity=0.049 Sum_probs=220.2
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf 99999621899901569999999987403882106789999998822999218999999999959897222489999999
Q 002667 14 LVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNNFTLIGRNYRNLC 93 (895)
Q Consensus 14 ~~aIkk~l~D~sPYVRK~AA~AI~Kly~ld~pe~~~~L~eil~~LL~D~dp~VvgsAi~Al~EIcP~r~~Lih~~yrkLc 93 (895)
...|-+++.++++.+||.+.+++..+.+.+ |+....++..+.+.|+|.|+.|.+.|+.++..+... ++.......+.
T Consensus 51 ~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~-~e~~~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~~~--~~~~~l~~~l~ 127 (591)
T 2vgl_B 51 FPDVVNCMQTDNLELKKLVYLYLMNYAKSQ-PDMAIMAVNSFVKDCEDPNPLIRALAVRTMGCIRVD--KITEYLCEPLR 127 (591)
T ss_dssp HHHHHHTTSSSCHHHHHHHHHHHHHHHHHS-HHHHHTTHHHHGGGSSSSSHHHHHHHHHHHHTCCSG--GGHHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHH--HHHHHHHHHHH
T ss_conf 999998817998999999999999986658-068999999999776999999999999998758907--78999999999
Q ss_pred HHCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCC
Q ss_conf 74899992249999999996221013664201111221102578741100000001138999976640123321000002
Q 002667 94 QILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRTYDSELVNLVSRSYIE 173 (895)
Q Consensus 94 ~~L~d~dEWgQv~iL~lL~rY~r~~~~~~~ps~mf~~~~~~~~~~~e~~~~~~~~l~~q~~~~~~~~~~~~~~~~~~~~~ 173 (895)
+.|.+-++.-+-.....|.+..+.. |.
T Consensus 128 ~~L~d~~~~VRk~A~~al~~i~~~~-----p~------------------------------------------------ 154 (591)
T 2vgl_B 128 KCLKDEDPYVRKTAAVCVAKLHDIN-----AQ------------------------------------------------ 154 (591)
T ss_dssp HHSSCSCHHHHHHHHHHHHHHHHSS-----CC------------------------------------------------
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHC-----HH------------------------------------------------
T ss_conf 9817998589999999999998519-----24------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHH-------HHHHHHH
Q ss_conf 543212357775555666557644689887469999996311004899499999999999369978-------8999899
Q 002667 174 GLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSPKE-------DVKRIVK 246 (895)
Q Consensus 174 ~~d~~l~~~~~~~~~~~~~~~~~~~~~~~d~D~~lLL~~~~pLLqS~NsAVVlaaa~l~~~lap~~-------~l~~i~~ 246 (895)
.. ++ .-++..+..+|...|+.|+.+|+.++..+++.. ....+..
T Consensus 155 ---------------------------~~-~~-~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~ 205 (591)
T 2vgl_B 155 ---------------------------MV-ED-QGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNIN 205 (591)
T ss_dssp ---------------------------CH-HH-HHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHH
T ss_pred ---------------------------HC-CC-CCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCHHCCHHHHH
T ss_conf ---------------------------14-46-35899999996799843999999999999763787540442699999
Q ss_pred HHHHHHCC-CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCE-ECCCCCHHHHHHHHHHHHHHCC-----CCCHHHHHHHHH
Q ss_conf 99987327-8861588999999999769962010003004-2368948799999999986138-----877999999999
Q 002667 247 PLLFILRS-SGASKYVVLCNIQVFAKALPHLFVPHYEDFF-VSSSDSYQSKALKLEILSSIVT-----ESSISSVFKEFQ 319 (895)
Q Consensus 247 ~Li~LL~S-~~eiqyvvL~~I~~l~~~~p~lF~~~lk~Ff-v~~~Dp~~IK~lKLeIL~~Lan-----e~Nv~~IL~EL~ 319 (895)
.|+..+.. ++-.|-.+|+.+..+....+......+..+. +..+....|+......+..+.+ ++-+..++..+.
T Consensus 206 ~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~ 285 (591)
T 2vgl_B 206 KLLTALNECTEWGQIFILDCLSNYNPKDDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLA 285 (591)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTH
T ss_pred HHHHCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 99874887882578999999998679985999999999999875898499999999999974024788799999999999
Q ss_pred H---HHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCH
Q ss_conf 9---3304983499999999999996195008999999999987321026656789987303658999999996099544
Q 002667 320 D---YIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQDPSCH 396 (895)
Q Consensus 320 ~---Y~~~~D~~f~~~aI~AIG~lA~k~p~~a~~cl~~Ll~LLs~~~~~~~~~~~~~~~~vV~EsV~vik~Liq~~p~~~ 396 (895)
. .+.+.|.+++..++++|+.++...|......+..++.+. +.+..+-.+++..+-.+ .++...
T Consensus 286 ~~L~~L~~~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~------------~d~~~Ir~~al~~L~~l--~~~~nv 351 (591)
T 2vgl_B 286 PPLVTLLSGEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKY------------NDPIYVKLEKLDIMIRL--ASQANI 351 (591)
T ss_dssp HHHHHHTTSCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCT------------TSCHHHHHHHHHHHHHT--CCSSTH
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHEECC------------CCHHHHHHHHHHHHHHH--CCHHHH
T ss_conf 9999996699208999999999999869698999887550036------------99399999999999987--786239
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHH
Q ss_conf 99999999963004703468866642035567878762208999999997310470999999999999986625798847
Q 002667 397 EKVIIQLFRSLDSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMW 476 (895)
Q Consensus 397 ~~ii~~L~~~ld~I~~p~ArasIiWLIGEY~~~~e~ip~ia~dvLr~l~k~F~~E~~~VKlqILta~aKL~~~~p~e~~~ 476 (895)
..++..|..++... ++..|..++|-||..+. +.|.....++..+.+-+......++..++.....+.-..|.....
T Consensus 352 ~~iv~~L~~~l~~~-d~~~r~~~v~aI~~la~---~~~~~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p~~~~~ 427 (591)
T 2vgl_B 352 AQVLAELKEYATEV-DVDFVRKAVRAIGRCAI---KVEQSAERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPNKYES 427 (591)
T ss_dssp HHHHHHHHHHTTSS-CHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSCSSCCT
T ss_pred HHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHH---HCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHH
T ss_conf 99999999998657-99999999999999998---574679999999999983551689999999999999979205789
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 99999999999870299957986899999970589
Q 002667 477 TITRLFSYLLELAECDLNYDVRDRARFFKKLFSHN 511 (895)
Q Consensus 477 ~~~~l~qyvLela~~D~n~DVRDRAr~y~~LL~~~ 511 (895)
.+..+++ .-..+.++++| +...|-|-..+
T Consensus 428 ~v~~L~~----~l~~~~~~~~~--~~~~wilGey~ 456 (591)
T 2vgl_B 428 IIATLCE----NLDSLDEPDAR--AAMIWIVGEYA 456 (591)
T ss_dssp THHHHHH----TTTTCCSHHHH--HHHHHHHHTTC
T ss_pred HHHHHHH----HHHHCCCHHHH--HHHHHHHHCCC
T ss_conf 9999998----88742378999--99999997031
No 7
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=1.00 E-value=1 Score=105.28 Aligned_cols=138 Identities=12% Similarity=0.103 Sum_probs=54.0
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHCC---CH-HHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHHCCC-CCCCCC
Q ss_conf 99996311004899499999999999369---97-8899989999987327-886158899999999976996-201000
Q 002667 208 LLLQCTSPLLWSHNSAVVLAAAGVHWIMS---PK-EDVKRIVKPLLFILRS-SGASKYVVLCNIQVFAKALPH-LFVPHY 281 (895)
Q Consensus 208 lLL~~~~pLLqS~NsAVVlaaa~l~~~la---p~-~~l~~i~~~Li~LL~S-~~eiqyvvL~~I~~l~~~~p~-lF~~~l 281 (895)
.++..+..+++..++.|-.+++..+-.++ +. .....+...|..++.. +.++|..++..+..++...+. .+.+++
T Consensus 164 ~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 243 (588)
T 1b3u_A 164 ELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALV 243 (588)
T ss_dssp HHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHHHHHHT
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_conf 99999999848997889999999899999981677679999999998824992889998999999999857988888789
Q ss_pred CCCE-ECCCCC-HHHHHHHHHHHHHHCCC---CC-HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf 3004-236894-87999999999861388---77-99999999993304983499999999999996195
Q 002667 282 EDFF-VSSSDS-YQSKALKLEILSSIVTE---SS-ISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLP 345 (895)
Q Consensus 282 k~Ff-v~~~Dp-~~IK~lKLeIL~~Lane---~N-v~~IL~EL~~Y~~~~D~~f~~~aI~AIG~lA~k~p 345 (895)
..++ -...|+ ..+|....+.|..++.. .. ...++.-|...+.+.+.+.+..+..++|.++...+
T Consensus 244 ~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~ 313 (588)
T 1b3u_A 244 MPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLS 313 (588)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 9999998069977899999999999999819521055899999998589958999999987999999727
No 8
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=1.00 E-value=1 Score=101.84 Aligned_cols=91 Identities=10% Similarity=0.037 Sum_probs=39.1
Q ss_pred HHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 62189990156999999998740388210678999999882299921899999999995989722248999999974899
Q 002667 19 KCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNNFTLIGRNYRNLCQILPD 98 (895)
Q Consensus 19 k~l~D~sPYVRK~AA~AI~Kly~ld~pe~~~~L~eil~~LL~D~dp~VvgsAi~Al~EIcP~r~~Lih~~yrkLc~~L~d 98 (895)
|++.+.+.-+||.+-+++..+.+-+ ||..-..+..+.+-|.|+|+.|.+.|+.++..+... ++.......+.+.|.+
T Consensus 77 k~~~s~~~~~Krl~Yl~~~~~~~~~-~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~~--~~~~~l~~~l~~~L~~ 153 (618)
T 1w63_A 77 KLIASQKFTDKRIGYLGAMLLLDER-QDVHLLMTNCIKNDLNHSTQFVQGLALCTLGCMGSS--EMCRDLAGEVEKLLKT 153 (618)
T ss_dssp HHHHSSSHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHCCH--HHHHHHHHHHHHHHHS
T ss_pred HHHCCCCHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCH--HHHHHHHHHHHHHHCC
T ss_conf 9981886688887999999981789-189999999998766898784899999998862989--9999999999999759
Q ss_pred CCHHHHHHHHHHHH
Q ss_conf 99224999999999
Q 002667 99 VEEWGQILLIEILL 112 (895)
Q Consensus 99 ~dEWgQv~iL~lL~ 112 (895)
-+++-.-..+-.+.
T Consensus 154 ~~~~VRk~A~~al~ 167 (618)
T 1w63_A 154 SNSYLRKKAALCAV 167 (618)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
T ss_conf 98799999999999
No 9
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=1.00 E-value=1 Score=98.64 Aligned_cols=270 Identities=10% Similarity=0.081 Sum_probs=166.4
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCC---HH---HHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHHCCCCCC
Q ss_conf 99999963110048994999999999993699---78---899989999987327-886158899999999976996201
Q 002667 206 VKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSP---KE---DVKRIVKPLLFILRS-SGASKYVVLCNIQVFAKALPHLFV 278 (895)
Q Consensus 206 ~~lLL~~~~pLLqS~NsAVVlaaa~l~~~lap---~~---~l~~i~~~Li~LL~S-~~eiqyvvL~~I~~l~~~~p~lF~ 278 (895)
...++..+..++++.++.|-.+|++++..+.. .. .+..+...|+.++.. +.++|..++..+..++...|..+.
T Consensus 172 ~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~ 251 (852)
T 4fdd_A 172 LNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLL 251 (852)
T ss_dssp HHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHG
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCHHHHH
T ss_conf 99999999998567978999999999999986463879988999999999871799778999999999999985779899
Q ss_pred CCCCCCE-----ECCCCCHHHHHHHHHHHHHHCCCC--------CHHHHHHHHHHHH-----------CC----------
Q ss_conf 0003004-----236894879999999998613887--------7999999999933-----------04----------
Q 002667 279 PHYEDFF-----VSSSDSYQSKALKLEILSSIVTES--------SISSVFKEFQDYI-----------RD---------- 324 (895)
Q Consensus 279 ~~lk~Ff-----v~~~Dp~~IK~lKLeIL~~Lane~--------Nv~~IL~EL~~Y~-----------~~---------- 324 (895)
+|+..++ +..++...+|...++.+..++... .+..++.-+.... .+
T Consensus 252 ~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~ 331 (852)
T 4fdd_A 252 PHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDT 331 (852)
T ss_dssp GGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC-----------
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCC
T ss_conf 88999999999870699689999999999998603657988788898899999987578676799866984432224564
Q ss_pred -CCHHHHHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHHHHHCCCCCCCCCCCCC-HHHHHHHHHHHHHHHCCC----CHH
Q ss_conf -98349999999999999619500-89999999999873210266567899873-036589999999960995----449
Q 002667 325 -PDRRFAADTVAAIGLCARKLPKM-ANTCVEGLLALIRQELLTSDIESGNGEAD-VLIQSIISIKSIIKQDPS----CHE 397 (895)
Q Consensus 325 -~D~~f~~~aI~AIG~lA~k~p~~-a~~cl~~Ll~LLs~~~~~~~~~~~~~~~~-vV~EsV~vik~Liq~~p~----~~~ 397 (895)
.+..++..+..+++.++...+.. ....+..+..++.. ..+ +-..++..+..|....+. ...
T Consensus 332 ~~~~~vr~~a~~~L~~la~~~~~~~~~~l~~~l~~~l~~------------~~~~~R~aa~~alg~i~~~~~~~~~~~l~ 399 (852)
T 4fdd_A 332 ISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFH------------HEWVVKESGILVLGAIAEGCMQGMIPYLP 399 (852)
T ss_dssp -CCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHTC------------SSHHHHHHHHHHHHHTTTTTHHHHGGGHH
T ss_pred CCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCC------------CCHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_conf 011169999999999998746187899999999998559------------98899999999999998635688998799
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCC--CCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCH
Q ss_conf 9999999963004703468866642035567878--76220899999999731047099999999999998662579884
Q 002667 398 KVIIQLFRSLDSIKVPEARVMIIWMVGEYSSVGV--KIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDM 475 (895)
Q Consensus 398 ~ii~~L~~~ld~I~~p~ArasIiWLIGEY~~~~e--~ip~ia~dvLr~l~k~F~~E~~~VKlqILta~aKL~~~~p~e~~ 475 (895)
.++..+...+.+ ..+..|.+.+|.+|.++.... ........++..+.+...+....||.....+...+.-..+.+..
T Consensus 400 ~~l~~l~~~l~d-~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~ 478 (852)
T 4fdd_A 400 ELIPHLIQCLSD-KKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELV 478 (852)
T ss_dssp HHHHHHHHHTTC-SSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGG
T ss_pred HHHHHHHHHCCC-CCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999987179-9889999999999999988611047899999999999998589888999999999999997367667
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 7999999999998
Q 002667 476 WTITRLFSYLLEL 488 (895)
Q Consensus 476 ~~~~~l~qyvLel 488 (895)
+.+..+++.++.+
T Consensus 479 ~~l~~ll~~L~~~ 491 (852)
T 4fdd_A 479 PYLAYILDTLVFA 491 (852)
T ss_dssp GGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
T ss_conf 6799999999999
No 10
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=1.00 E-value=1 Score=98.09 Aligned_cols=37 Identities=5% Similarity=0.165 Sum_probs=19.1
Q ss_pred CCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf 8779999999999330498349999999999999619
Q 002667 308 ESSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKL 344 (895)
Q Consensus 308 e~Nv~~IL~EL~~Y~~~~D~~f~~~aI~AIG~lA~k~ 344 (895)
+.-+..++.-+..++.+.+...+..++.++|.++...
T Consensus 354 ~~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~ 390 (852)
T 4fdd_A 354 DELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGC 390 (852)
T ss_dssp GGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC
T ss_conf 8789999999999855998899999999999998635
Done!