Query 002668
Match_columns 894
No_of_seqs 248 out of 2533
Neff 8.6
Searched_HMMs 29240
Date Tue Mar 26 18:19:16 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002668.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1384-1388//hhsearch_pdb/002668hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2zxe_A Na, K-ATPase alpha subu 1.0 1 1 811.4 37.5 642 48-889 73-746 (1028)
2 3ar4_A Sarcoplasmic/endoplasmi 1.0 1 1 796.0 43.3 668 47-892 29-727 (995)
3 3ixz_A Potassium-transporting 1.0 1 1 795.0 55.2 639 48-885 78-745 (1034)
4 1mhs_A Proton pump, plasma mem 1.0 1 1 741.0 31.5 557 48-893 93-658 (920)
5 3b8c_A ATPase 2, plasma membra 1.0 1 1 737.4 -12.8 566 47-893 37-612 (885)
6 3rfu_A Copper efflux ATPase; a 1.0 1 1 563.4 26.9 449 109-892 190-647 (736)
7 3j09_A COPA, copper-exporting 1.0 1 1 552.1 39.3 442 111-893 178-628 (723)
8 3j08_A COPA, copper-exporting 1.0 1 1 547.7 36.7 441 112-893 101-550 (645)
9 2yj3_A Copper-transporting ATP 1.0 1 1 187.3 0.0 103 697-886 123-225 (263)
10 3a1c_A Probable copper-exporti 1.0 1 1 159.2 21.8 238 402-886 14-251 (287)
No 1
>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_A* 3b8e_A* 3kdp_A* 3n2f_A* 3n23_A* 1mo7_A 1mo8_A* 1q3i_A
Probab=1.00 E-value=1 Score=811.41 Aligned_cols=642 Identities=21% Similarity=0.242 Sum_probs=497.9
Q ss_pred CCCCCCCCCCCEEECCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--C-------CCCCCCCHHHHHHHHHHH
Q ss_conf 60102688897221366-5313445899999987788999999998842568--8-------888871036589999999
Q 002668 48 PEVVQLNYRGNYVSTTK-YTAANFIPKSLFEQFRRVANIYFLVVAFVSFSPL--A-------PYSAPSVLAPLIVVIGAT 117 (894)
Q Consensus 48 ~~~~~~~yg~N~i~~~k-y~~~~fl~~~l~~qf~~~~n~~fl~~~il~~i~~--~-------~~~~~~~~~~l~~vi~~s 117 (894)
.++|+.+||+|.+..++ .++| +.|++||.++++++++++++++++.+ . ....+...++++++++++
T Consensus 73 ~~~r~~~~G~N~l~~~~~~~~~----~~~~~~~~~~~~~iL~~aa~ls~~~~~~~~~~~~~~~~~~~~~~~~i~~vv~i~ 148 (1028)
T 2zxe_A 73 AKEILARDGPNSLTPPPTTPEW----IKFCRQLFGGFSILLWIGAILCFLAYGIQAATEDEPANDNLYLGVVLSTVVIVT 148 (1028)
T ss_dssp HHHHHHHHCCSCCCCCCCCCHH----HHHHTTTTSTHHHHHHHHHHHHHHHHHHHHHSSCCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCCCCCCCCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 9999986699979999999899----999999970899999999999999987511345666520079998989888899
Q ss_pred HHHHHHHHHHHHHHHHHHH---CCEEEEECCCCEEEEEECCCCCCCCEEEECCCCCCCCCEEEEEEECCCCEEEEECCCC
Q ss_conf 7499999999854489986---3405999158809998222355583999606974697189983426896399981588
Q 002668 118 MAKEGVEDWRRRKQDIEAN---NRKVKVYGQDHTFVETKWKNLRVGDLVKVHKDEYFPADLLLLSSIYEDGICYVETMNL 194 (894)
Q Consensus 118 ~i~~~~~d~~r~k~~~~~n---~~~~~V~r~~g~~~~i~~~~L~vGDII~i~~ge~iPaD~ilL~ss~~~G~~~Vdts~L 194 (894)
++.++++++|..++.+.+. +.+++|+| ||+++.|++++|+|||||.|++||.||||++|+++++ |+||||+|
T Consensus 149 ~~~~~~qe~ka~~~~~~L~~l~~~~a~V~R-dg~~~~I~~~~Lv~GDiV~l~~Gd~IPaD~~ll~g~~----~~VdeS~L 223 (1028)
T 2zxe_A 149 GCFSYYQEAKSSRIMDSFKNMVPQQALVIR-DGEKSTINAEFVVAGDLVEVKGGDRIPADLRIISAHG----CKVDNSSL 223 (1028)
T ss_dssp HHHHHHHTCCCCCHHHHHHTTSCSEEEEEE-TTEEEEEEGGGCCTTCEEEEETTCBCCSEEEEEEEEE----EEEECHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEEEEE-CCEEEEEEHHHCCCCCEEEECCCCEEECEEEEEEECC----EEEECCCC
T ss_conf 999999999999999998852787269998-9999999888978677799899798412289996085----89986756
Q ss_pred CCCCCCEECCCCHHHCCCCCHHHHCCCEEEEEEECCCCCCCEEEEEEEECCEEEECCCCCEEECCEEEEECCEEEEEEEE
Q ss_conf 77765300021001013788444413426999616988851269999987956306976503126087306819999999
Q 002668 195 DGETNLKLKRSLEATNHLRDEESFQKFTAVIKCEDPNERLYSFVGTLQYEGKQYPLSPQQILLRDSKLKNTDYVYGVVVF 274 (894)
Q Consensus 195 tGEs~~~~K~~~~~~~~~~~~~~~~~~~~~i~~e~p~~~~~~f~Gt~~~~g~~~~l~~~nii~rgs~l~nt~~~~gvVi~ 274 (894)
||||.|+.|.+.+.. + .+++.+|++++||.+. .+++.|+|++
T Consensus 224 TGES~pv~K~~~~~~--------------------~-----------------~~~~~~n~v~~GT~v~-~G~~~~~V~~ 265 (1028)
T 2zxe_A 224 TGESEPQTRSPEFSS--------------------E-----------------NPLETRNIAFFSTNCV-EGTARGVVVY 265 (1028)
T ss_dssp HSCCSCEECCSSCCC--------------------S-----------------STTTCSSEECTTCEEE-EEEEEEEEEE
T ss_pred CCCCCCEECCCCCCC--------------------C-----------------CCCCCCCEEEECCEEE-CCEEEEEEEE
T ss_conf 788763443467788--------------------8-----------------8445335487374697-0169999998
Q ss_pred ECCCCHH---HHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 3362002---2026999986429999997999999999999999999977654032368974211123789987546899
Q 002668 275 TGHDTKV---MQNATDPPSKRSKIERKMDKIVYLLFSTLILISSTGSVFFGIETKRDIDGGKIRRWYLQPDDATVFYDPR 351 (894)
Q Consensus 275 tG~~Tk~---~~~~~~~~~k~s~~~~~~~~~~~~l~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~wy~~~~~~~~~~~~~ 351 (894)
||.+|++ +++...++.+++++++.+++++.+++.+.++++++.+++..+ .. . .|
T Consensus 266 tG~~T~~g~i~~~~~~~~~~~t~lq~~~~~~~~~l~~~~l~~~~~~~~~~~~-~~-~-------~~-------------- 322 (1028)
T 2zxe_A 266 TGDRTVMGRIATLASGLEVGRTPIAIEIEHFIHIITGVAVFLGVSFFILSLI-LG-Y-------SW-------------- 322 (1028)
T ss_dssp CGGGSHHHHHHHHHHHSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TT-C-------CH--------------
T ss_pred ECCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CC-C-------CH--------------
T ss_conf 4514398899986037887889289999999999999999999999999997-36-7-------69--------------
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCCCCEEEEEECCCCCC
Q ss_conf 94367899999999986102321436789999999998751253322346999807723742001334039997498730
Q 002668 352 RAPLAAFLHFLTGLMLYGYLIPISLYISIEIVKVLQSVFINHDRDMYYEDTDKPARARTSNLNEELGQVDTILSDKTGTL 431 (894)
Q Consensus 352 ~~~~~~~~~~~~~i~ll~~~iP~sL~v~l~~~~~~~~~~l~~d~~m~~~~~~~~i~~~~~~~~e~Lg~v~~I~~DKTGTL 431 (894)
...+..++.+++.+||++||++++++..+++.+| +++++++|+++++|+||++++|||||||||
T Consensus 323 ------~~~~~~~i~llv~~iP~~Lp~~vti~l~~~~~~m----------ak~~ilvk~~~avE~Lg~v~~Ic~DKTGTL 386 (1028)
T 2zxe_A 323 ------LEAVIFLIGIIVANVPEGLLATVTVCLTLTAKRM----------ARKNCLVKNLEAVETLGSTSTICSDKTGTL 386 (1028)
T ss_dssp ------HHHHHHHHHHHHHHSCTTHHHHHHHHHHHHHHHH----------HTTTEEESSTTHHHHHHHCCEEEECCCCCC
T ss_pred ------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH----------HHCCCEECCCHHHHHHCCCEEEECCCCCCC
T ss_conf ------9999999999999747417999999999999998----------558916444567664147629951688888
Q ss_pred EEEEEEEEEEEECCEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCC
Q ss_conf 11002999999848303677128989999750887655688888899988764347876678555614331356789987
Q 002668 432 TCNSMEFVKCSVAGVAYGRVMTEVERTLAKRKGERTFEVDDSQTDAPGLNGNIVESGKSVKGFNFRDERIMNGQWVNEPH 511 (894)
Q Consensus 432 T~n~m~~~~~~i~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 511 (894)
|+|+|.+.++++.+..|.....+ . ..+.. ....
T Consensus 387 T~n~m~v~~~~~~~~~~~~~~~~----------------------------------~-~~~~~------------~~~~ 419 (1028)
T 2zxe_A 387 TQNRMTVAHMWFDNQIHEADTTE----------------------------------N-QSGAA------------FDKT 419 (1028)
T ss_dssp BCSSCEEEEEEETTEEEECCCCT----------------------------------T-CCSCC------------CCSS
T ss_pred CCCEEEEEEEEECCEEEECCCCC----------------------------------C-CCCCC------------CCCC
T ss_conf 87738999999898465136777----------------------------------7-65544------------4667
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCC--EEEEECCHHHHHHHHHHHHCCCEEEEECCCEEEEEECCCCCCCCCCEEEEE
Q ss_conf 068999999996742410367899994--477306940999999999839699712488269994488776531168899
Q 002668 512 SDVIQKFFRVLAICHTAIPDVNEETGE--ISYEAESPDEAAFVIAAREVGFQFFGSSQTSISLHELDPVSGQKVNRVYEL 589 (894)
Q Consensus 512 ~~~~~~~~~~lalC~~~~~~~~~~~~~--~~~~~~sp~e~al~~~a~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i 589 (894)
......++.++++||++..+...+... ..+..++|+|.|+++++...|.... ..+..|++
T Consensus 420 ~~~~~~l~~~~alc~~~~~~~~~~~hp~~~~~~~gdp~E~Al~~~a~~~~~~~~------------------~~~~~~~~ 481 (1028)
T 2zxe_A 420 SATWSALSRIAALCNRAVFQAGQDNVPILKRSVAGDASESALLKCIELCCGSVQ------------------GMRDRNPK 481 (1028)
T ss_dssp CHHHHHHHHHHHHSCCCEECTTCTTSCGGGSCEESCHHHHHHHHHHHHHHSCHH------------------HHHHHSCE
T ss_pred CHHHHHHHHHHHHCCCCEEECCCCCCCCCCCEECCCCHHHHHHHHHHHHCCCHH------------------HHHHHCCE
T ss_conf 789999999998657876504777776645300789409999999999589888------------------98874826
Q ss_pred EEEECCCCCCCEEEEEEECC---CCCEEEEEECCCHHHHHHHCCC---------CHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 56532568873148999869---9929999815605778986003---------50119999999999985388388999
Q 002668 590 LHVLEFTSSRKRMSVMVRNP---ENQLLLLCKGADSVMFERLSKH---------GQQFEAETRRHINRYAEAGLRTLVIA 657 (894)
Q Consensus 590 l~~~~F~s~rkrmsviv~~~---~~~~~l~~KGa~~~I~~~~~~~---------~~~~~~~~~~~l~~~~~~Glr~l~~A 657 (894)
+..+||+|.||||+++++.+ ++++++|+||||+.|+++|+.. ++..++.+.+++++|+.+|+|||++|
T Consensus 482 ~~~~pF~s~rk~msvi~~~~~~~~~~~~~~~KGA~e~il~~c~~~~~~g~~~~l~~~~~~~~~~~~~~~a~~G~RvL~~A 561 (1028)
T 2zxe_A 482 IVEIPFNSTNKYQLSIHENEKSSESRYLLVMKGAPERILDRCSTILLNGAEEPLKEDMKEAFQNAYLELGGLGERVLGFC 561 (1028)
T ss_dssp EEEECCCTTTCEEEEEEECSCTTTCCEEEEEEECHHHHHTTEEEECBTTBCCBCCHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred EEEECCCCCCCEEEEEEECCCCCCCCEEEEEECCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 78704476666479999405788871799993882899987456533897212888999999999999985599799999
Q ss_pred EEECCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCHHHHHHHHHHCCCEEEEECCCCH
Q ss_conf 99239989999999999985310004999999999984028479998753233578939999999975986999929976
Q 002668 658 YRELGEDEYRIWEKEFLKAKTSVTSDREALVASAAEKIERDLILLGATAVEDKLQKGVPECIDKLAQAGIKVWVLTGDKM 737 (894)
Q Consensus 658 ~k~l~~~e~~~~~~~~~~a~~~~~~~r~~~~~~~~~~iE~~l~llG~~~ieD~lr~~v~~~I~~Lk~aGIkv~ilTGD~~ 737 (894)
||++++.++.++. . .+++ ..+.+|+|++|+|+++++||+|++++++|+.|+++||++||+|||+.
T Consensus 562 ~~~l~~~~~~~~~--------~--~~~~-----~~~~~e~~l~~lG~i~i~Dplr~~~~~aI~~l~~aGI~v~miTGD~~ 626 (1028)
T 2zxe_A 562 HFALPEDKYNEGY--------P--FDAD-----EPNFPTTDLCFVGLMAMIDPPRAAVPDAVGKCRSAGIKVIMVTGDHP 626 (1028)
T ss_dssp EEECCSTTSCTTC--------C--CCTT-----TTCSCCSSEEEEEEEEEECCBCTTHHHHHHHHHHTTCEEEEECSSCH
T ss_pred EEECCCCCCCCCC--------C--CCHH-----HHHHHHCCEEEEEEECCCCCCCHHHHHHHHHHHHCCCEEEEECCCCH
T ss_conf 8746822134201--------2--4624-----55555438099865115789984489999999986997999889977
Q ss_pred HHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCHHH
Q ss_conf 56999999827755684289982899225675310213567687689899999863310133456765089999060247
Q 002668 738 ETAINIGYACSLLRQEMKQIVITLDSPDMEALEKQGDKENITKVSLESVTKQIREGISQVNSAKESKVTFGLVIDGKSLD 817 (894)
Q Consensus 738 ~ta~~ia~~~gl~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvi~G~~l~ 817 (894)
.||.+||++|||...+...+ .. ............ ........+++|..+.
T Consensus 627 ~tA~~ia~~lgi~~~~~~~i---------~~-----------------~~~~~~~~~~~~----~~~~~~~~vi~G~~l~ 676 (1028)
T 2zxe_A 627 ITAKAIAKGVGIISEGNETI---------ED-----------------IAARLNIPIGQV----NPRDAKACVVHGSDLK 676 (1028)
T ss_dssp HHHHHHHHHHTSSCTTCCCH---------HH-----------------HHHHTTCCGGGS----CGGGCCEEEEEHHHHT
T ss_pred HHHHHHHHHCCCCCCCCHHH---------HH-----------------HHHHCCCCHHHC----CCCCCCEEEEECHHHH
T ss_conf 99999999869887883367---------77-----------------776418632221----5556626998808856
Q ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHCCCCEEEEECCCHHHHHHHHHCCCEEEEC--CCCC
Q ss_conf 87118999999998611692199940761589997864049978999938943199988289109922--8220
Q 002668 818 FALDKKLEKMFLDLAIDCASVICCRSSPKQKALVTRLVKGTGKTTLAIGDGANDVGMLQEADIGVGIS--GVEG 889 (894)
Q Consensus 818 ~~l~~~~~~~~~~l~~~~~~~v~~r~sP~qK~~iv~~l~~~g~~vl~iGDG~ND~~ml~~A~vGI~i~--g~eg 889 (894)
...++++ .++...+..++|||++|+||..+|+.+++.|++|+|+|||.||++||++|||||+|+ |.+.
T Consensus 677 ~~~~~~l----~~~~~~~~~~v~ar~~P~~K~~iV~~lq~~g~~V~~iGDG~ND~paLk~AdvGIAmg~~gtd~ 746 (1028)
T 2zxe_A 677 DLSTEVL----DDILHYHTEIVFARTSPQQKLIIVEGCQRQGAIVAVTGDGVNDSPALKKADIGVAMGISGSDV 746 (1028)
T ss_dssp TCCHHHH----HHHHHHCSEEEEESCCHHHHHHHHHHHHHTTCCEEEEECSGGGHHHHHHSSEEEEESSSCCHH
T ss_pred HCCHHHH----HHHHHHCCCEEEEECCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCEEEECCCCCHH
T ss_conf 4799999----999862796799985888999999999968998999858853399998689119967765888
No 2
>3ar4_A Sarcoplasmic/endoplasmic reticulum calcium ATPase; P-type ATPase, hydrolase, calcium transport, calcium binding binding; HET: ATP TG1 PTY; 2.15A {Oryctolagus cuniculus} PDB: 2ear_A* 2eas_A* 2eat_A* 2eau_A* 2dqs_A* 2zbe_A 2zbf_A* 2zbg_A* 3ar2_A* 2zbd_A* 3ar3_A* 3ar5_A* 3ar6_A* 3ar7_A* 3ar8_A* 3ar9_A* 3n5k_A* 1kju_A 1iwo_A 1t5s_A* ...
Probab=1.00 E-value=1 Score=796.01 Aligned_cols=668 Identities=21% Similarity=0.243 Sum_probs=491.4
Q ss_pred CCCCCCCCCCCCEEECCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCC-----CCCCCHHHHHHHHHHHHH
Q ss_conf 9601026888972213665-31344589999998778899999999884256-8888-----887103658999999974
Q 002668 47 NPEVVQLNYRGNYVSTTKY-TAANFIPKSLFEQFRRVANIYFLVVAFVSFSP-LAPY-----SAPSVLAPLIVVIGATMA 119 (894)
Q Consensus 47 ~~~~~~~~yg~N~i~~~ky-~~~~fl~~~l~~qf~~~~n~~fl~~~il~~i~-~~~~-----~~~~~~~~l~~vi~~s~i 119 (894)
+.++|+.+||+|.+..+++ ++| +.|++||+++++++|++++++++++ +... ..|...+.++++++++.+
T Consensus 29 e~~~r~~~~G~N~l~~~~~~~~~----~~~~~qf~~~~~~~l~~~a~~s~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 104 (995)
T 3ar4_A 29 QVKRHLEKYGHNELPAEEGKSLW----ELVIEQFEDLLVRILLLAACISFVLAWFEEGEETITAFVEPFVILLILIANAI 104 (995)
T ss_dssp HHHHHHHHHCCSSCCCCCCCCHH----HHHHGGGCSHHHHHHHHHHHHHHHHTTSCCSSGGGSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCCCCCCCCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 99999975688732898898699----99999998899999999999999988602566540347876886678899999
Q ss_pred HHHHHHHHHHHHHHHH---HCCEEEEECCCCE--EEEEECCCCCCCCEEEECCCCCCCCCEEEEEEECCCCEEEEECCCC
Q ss_conf 9999999985448998---6340599915880--9998222355583999606974697189983426896399981588
Q 002668 120 KEGVEDWRRRKQDIEA---NNRKVKVYGQDHT--FVETKWKNLRVGDLVKVHKDEYFPADLLLLSSIYEDGICYVETMNL 194 (894)
Q Consensus 120 ~~~~~d~~r~k~~~~~---n~~~~~V~r~~g~--~~~i~~~~L~vGDII~i~~ge~iPaD~ilL~ss~~~G~~~Vdts~L 194 (894)
...++++|..++...+ .+.+++|+| ||. +++|+|++|+|||||.|++||.||||++|++.+. +.|+||||+|
T Consensus 105 i~~~qe~~a~~al~~L~~~~~~~a~V~R-~g~~~~~~I~~~~lv~GDiV~l~~Gd~IPaD~~ll~~~s--~~l~VdeS~L 181 (995)
T 3ar4_A 105 VGVWQERNAENAIEALKEYEPEMGKVYR-ADRKSVQRIKARDIVPGDIVEVAVGDKVPADIRILSIKS--TTLRVDQSIL 181 (995)
T ss_dssp HHHHHHHHCCCHHHHHGGGSCSEEEEEB-TTCSSCEEEEGGGCCTTCEEEEETTCBCCSEEEEEEECS--SCEEEECHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCCEEEEEE-CCCCEEEEEEHHHCCCCCEEEECCCCCCCCCEEEEEEEE--CEEEEECCCC
T ss_conf 9999999999999998710897389993-798647997899987787899889784354489998850--4399982524
Q ss_pred CCCCCCEECCCCHHHCCCCCHHHHCCCEEEEEEECCCCCCCEEEEEEEECCEEEECCCCCEEECCEEEEECCEEEEEEEE
Q ss_conf 77765300021001013788444413426999616988851269999987956306976503126087306819999999
Q 002668 195 DGETNLKLKRSLEATNHLRDEESFQKFTAVIKCEDPNERLYSFVGTLQYEGKQYPLSPQQILLRDSKLKNTDYVYGVVVF 274 (894)
Q Consensus 195 tGEs~~~~K~~~~~~~~~~~~~~~~~~~~~i~~e~p~~~~~~f~Gt~~~~g~~~~l~~~nii~rgs~l~nt~~~~gvVi~ 274 (894)
||||.|+.|.+.+... + ...+.+.+|++++||.+.+ ++++|+|++
T Consensus 182 TGES~pv~K~~~~~~~-------------------~---------------~~~~~~~~~~v~~GT~v~~-G~~~~~V~~ 226 (995)
T 3ar4_A 182 TGESVSVIKHTEPVPD-------------------P---------------RAVNQDKKNMLFSGTNIAA-GKALGIVAT 226 (995)
T ss_dssp HCCCSCEEECCSCCCC-------------------T---------------TCCGGGCTTEECTTCEEEE-CEEEEEEEE
T ss_pred CCCCCCEECCCCCCCC-------------------C---------------CCCCCCCCCEEECCCEEEC-CEEEEEEEE
T ss_conf 6887633400456677-------------------6---------------6675554546761878984-458999997
Q ss_pred ECCCCHHH---HCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 33620022---026999986429999997999999999999999999977654032368974211123789987546899
Q 002668 275 TGHDTKVM---QNATDPPSKRSKIERKMDKIVYLLFSTLILISSTGSVFFGIETKRDIDGGKIRRWYLQPDDATVFYDPR 351 (894)
Q Consensus 275 tG~~Tk~~---~~~~~~~~k~s~~~~~~~~~~~~l~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~wy~~~~~~~~~~~~~ 351 (894)
||.+|+++ +....++.+++++++.++++..++..+.++++++.++++..+..... .+ ..|
T Consensus 227 tG~~T~~g~i~~~~~~~~~~~tplq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~-------------- 289 (995)
T 3ar4_A 227 TGVSTEIGKIRDQMAATEQDKTPLQQKLDEFGEQLSKVISLICVAVWLINIGHFNDPV-HG--GSW-------------- 289 (995)
T ss_dssp CGGGSHHHHHHHHHHTCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGGGSCS-SS--SCH--------------
T ss_pred CCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CC--CHH--------------
T ss_conf 6722198999997325787899389999999999999999999999999998741433-46--407--------------
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCCCCEEEEEECCCCCC
Q ss_conf 94367899999999986102321436789999999998751253322346999807723742001334039997498730
Q 002668 352 RAPLAAFLHFLTGLMLYGYLIPISLYISIEIVKVLQSVFINHDRDMYYEDTDKPARARTSNLNEELGQVDTILSDKTGTL 431 (894)
Q Consensus 352 ~~~~~~~~~~~~~i~ll~~~iP~sL~v~l~~~~~~~~~~l~~d~~m~~~~~~~~i~~~~~~~~e~Lg~v~~I~~DKTGTL 431 (894)
.......|..++.+++.+||++||++++++...++.+| +++++++|+++++|+||++++|||||||||
T Consensus 290 --~~~~~~~~~~ai~l~v~aiP~~Lp~~vt~~la~~~~~m----------a~~~~lvr~~~~iE~Lg~v~~ic~DKTGTL 357 (995)
T 3ar4_A 290 --IRGAIYYFKIAVALAVAAIPEGLPAVITTCLALGTRRM----------AKKNAIVRSLPSVETLGCTSVICSDKTGTL 357 (995)
T ss_dssp --HHHHHHHHHHHHHHHHHHSCTTHHHHHHHHHHHHHHHH----------HHTTEEESCTTHHHHHHTCCEEEEESTTTT
T ss_pred --HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH----------CCCCCEECCCHHHHHHCCCEEEEECCCCCC
T ss_conf --99999999999999998667604899999999999984----------417848613415555038339976588876
Q ss_pred EEEEEEEEEEEECCEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCC
Q ss_conf 11002999999848303677128989999750887655688888899988764347876678555614331356789987
Q 002668 432 TCNSMEFVKCSVAGVAYGRVMTEVERTLAKRKGERTFEVDDSQTDAPGLNGNIVESGKSVKGFNFRDERIMNGQWVNEPH 511 (894)
Q Consensus 432 T~n~m~~~~~~i~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 511 (894)
|+|+|+|.++++.+..++...... . ...+ ... ..+. + .. ..++.......
T Consensus 358 T~n~m~v~~~~~~~~~~~~~~~~~------~--~~~~-~~~--------------~~p~--~-~~----~~~~~~~~~~~ 407 (995)
T 3ar4_A 358 TTNQMSVCKMFIIDKVDGDFCSLN------E--FSIT-GST--------------YAPE--G-EV----LKNDKPIRSGQ 407 (995)
T ss_dssp BCCCCEEEEEEEEEEEETTEEEEE------E--EEEC-CSS--------------SSSC--C-CE----EETTEECCGGG
T ss_pred CCCCEEEEEEEECCCCCCCCCCCC------E--EECC-CCC--------------CCCC--C-CC----CCCCCCCCCCC
T ss_conf 658569999983475567655430------2--5404-777--------------6886--3-10----13664344445
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHCCCEEEEECCCEEEEEECCCCCCCCCCEEEEEEE
Q ss_conf 06899999999674241036789999447730694099999999983969971248826999448877653116889956
Q 002668 512 SDVIQKFFRVLAICHTAIPDVNEETGEISYEAESPDEAAFVIAAREVGFQFFGSSQTSISLHELDPVSGQKVNRVYELLH 591 (894)
Q Consensus 512 ~~~~~~~~~~lalC~~~~~~~~~~~~~~~~~~~sp~e~al~~~a~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~il~ 591 (894)
......++.++++||++.+..++..+.+ ...++|+|.|++.++++.|+ +.. ....+.............+..|++++
T Consensus 408 ~~~~~~l~~~~alc~~~~~~~~~~~~~~-~~~g~p~E~Al~~~a~~~g~-~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~ 484 (995)
T 3ar4_A 408 FDGLVELATICALCNDSSLDFNETKGVY-EKVGEATETALTTLVEKMNV-FNT-EVRNLSKVERANACNSVIRQLMKKEF 484 (995)
T ss_dssp CHHHHHHHHHHHHSCCCEEEEETTTTEE-EEESCHHHHHHHHHHHHHCT-TCC-CCTTSCTTTSTTHHHHHHHHHEEEEE
T ss_pred CHHHHHHHHHHHHCCCCCCCCCCCCCCE-EECCCCCHHHHHHHHHHCCC-CCC-CCCCCCCCCCCCCCHHHHHHHCCEEE
T ss_conf 5899999999987488805656889832-55479647999999998399-641-00013420101210155664174577
Q ss_pred EECCCCCCCEEEEEEECCCC-----CEEEEEECCCHHHHHHHCCC---------CHHHHHHHHHHHHHH--HHCCCEEEE
Q ss_conf 53256887314899986999-----29999815605778986003---------501199999999999--853883889
Q 002668 592 VLEFTSSRKRMSVMVRNPEN-----QLLLLCKGADSVMFERLSKH---------GQQFEAETRRHINRY--AEAGLRTLV 655 (894)
Q Consensus 592 ~~~F~s~rkrmsviv~~~~~-----~~~l~~KGa~~~I~~~~~~~---------~~~~~~~~~~~l~~~--~~~Glr~l~ 655 (894)
.+||+|+||||||+++.++| ...+|+||||+.|+++|+.. ++..++.+.+++++| +.+|+|||+
T Consensus 485 ~~pF~s~rk~msvi~~~~~g~~~~~~~~~~~KGa~e~il~~c~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~GlRvLa 564 (995)
T 3ar4_A 485 TLEFSRDRKSMSVYCSPAKSSRAAVGNKMFVKGAPEGVIDRCNYVRVGTTRVPMTGPVKEKILSVIKEWGTGRDTLRCLA 564 (995)
T ss_dssp EEEEETTTTEEEEEEEESSCCSCSCCCEEEEEECHHHHHHTEEEEEETTEEEECCHHHHHHHHHHHHHHHHSTTCCEEEE
T ss_pred EEECCCCCCEEEEEEECCCCCCCCCCEEEEECCCHHHHHHHCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEE
T ss_conf 74048888756999834898766644499975887999985405442897324999999999999998776305614889
Q ss_pred EEEEECCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCHHHHHHHHHHCCCEEEEECCC
Q ss_conf 99992399899999999999853100049999999999840284799987532335789399999999759869999299
Q 002668 656 IAYRELGEDEYRIWEKEFLKAKTSVTSDREALVASAAEKIERDLILLGATAVEDKLQKGVPECIDKLAQAGIKVWVLTGD 735 (894)
Q Consensus 656 ~A~k~l~~~e~~~~~~~~~~a~~~~~~~r~~~~~~~~~~iE~~l~llG~~~ieD~lr~~v~~~I~~Lk~aGIkv~ilTGD 735 (894)
+|||+++..+. ...+ .+ ....+.+|+|++|+|+++++|++|++++++|+.|+++||++||+|||
T Consensus 565 ~A~k~~~~~~~----------~~~~-~~-----~~~~~~~e~~l~~lG~~~i~D~lr~~~~~~I~~l~~~Gi~v~miTGD 628 (995)
T 3ar4_A 565 LATRDTPPKRE----------EMVL-DD-----SSRFMEYETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGD 628 (995)
T ss_dssp EEEESSCCCGG----------GCCT-TC-----GGGHHHHTCSEEEEEEEEEECCBCTTHHHHHHHHHHTTCEEEEEESS
T ss_pred EEEEECCCCCC----------CCCC-CC-----CHHHHHHCCCCEEEEEEEECCCCCHHHHHHHHHHHHCCCEEEEECCC
T ss_conf 99983476511----------1222-34-----02445530694899998525889666999999999869989998999
Q ss_pred CHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCH
Q ss_conf 76569999998277556842899828992256753102135676876898999998633101334567650899990602
Q 002668 736 KMETAINIGYACSLLRQEMKQIVITLDSPDMEALEKQGDKENITKVSLESVTKQIREGISQVNSAKESKVTFGLVIDGKS 815 (894)
Q Consensus 736 ~~~ta~~ia~~~gl~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvi~G~~ 815 (894)
+..||.++|+++||...+... . ..+++|..
T Consensus 629 ~~~ta~~ia~~lgi~~~~~~i------~--------------------------------------------~~~~~g~~ 658 (995)
T 3ar4_A 629 NKGTAIAICRRIGIFGENEEV------A--------------------------------------------DRAYTGRE 658 (995)
T ss_dssp CHHHHHHHHHHHTSSCTTCCC------T--------------------------------------------TTEEEHHH
T ss_pred CHHHHHHHHHHCCCCCCCCCC------C--------------------------------------------CEEEECHH
T ss_conf 789999999983967788753------5--------------------------------------------34898366
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHCCCCEEEEECCCHHHHHHHHHCCCEEEECCCCCCCC
Q ss_conf 47871189999999986116921999407615899978640499789999389431999882891099228220012
Q 002668 816 LDFALDKKLEKMFLDLAIDCASVICCRSSPKQKALVTRLVKGTGKTTLAIGDGANDVGMLQEADIGVGISGVEGMQV 892 (894)
Q Consensus 816 l~~~l~~~~~~~~~~l~~~~~~~v~~r~sP~qK~~iv~~l~~~g~~vl~iGDG~ND~~ml~~A~vGI~i~g~eg~qa 892 (894)
+..+.++++.+.+ . +..+|||++|+||..+|+.++..|+.|+|+|||.||++||++||+||+|+ +|+++
T Consensus 659 ~~~l~~~~~~~~~----~--~~~v~~r~~P~~K~~~v~~l~~~g~~v~~~GDG~ND~~alk~Advgiamg--~g~~~ 727 (995)
T 3ar4_A 659 FDDLPLAEQREAC----R--RACCFARVEPSHKSKIVEYLQSYDEITAMTGDGVNDAPALKKAEIGIAMG--SGTAV 727 (995)
T ss_dssp HHTSCHHHHHHHH----H--HCCEEESCCSSHHHHHHHHHHTTTCCEEEEECSGGGHHHHHHSTEEEEET--TSCHH
T ss_pred HHHCCHHHHHHHH----H--HCCEEEEECHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHCCEEEEEC--CCCHH
T ss_conf 4628999999987----5--37389970899999999999977997999838814499998789679967--88999
No 3
>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2yn9_A 2xzb_A 1iwc_A 1iwf_A
Probab=1.00 E-value=1 Score=794.99 Aligned_cols=639 Identities=21% Similarity=0.228 Sum_probs=497.6
Q ss_pred CCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--C-------CCCCCCCCHHHHHHHHHHHH
Q ss_conf 60102688897221366531344589999998778899999999884256--8-------88888710365899999997
Q 002668 48 PEVVQLNYRGNYVSTTKYTAANFIPKSLFEQFRRVANIYFLVVAFVSFSP--L-------APYSAPSVLAPLIVVIGATM 118 (894)
Q Consensus 48 ~~~~~~~yg~N~i~~~ky~~~~fl~~~l~~qf~~~~n~~fl~~~il~~i~--~-------~~~~~~~~~~~l~~vi~~s~ 118 (894)
.++|+.+||+|.+..++...+. +.|++||.++++++++++++++++. + ...+.+...+++++++++++
T Consensus 78 a~~rl~~~G~N~l~~~~~~~~~---~~~~~q~~~~~~~il~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vv~i~~ 154 (1034)
T 3ixz_A 78 AAELLLRDGPNALRPPRGTPEY---VKFARQLAGGLQCLMWVAAAICLIAFAIQASEGDLTTDDNLYLALALIAVVVVTG 154 (1034)
T ss_pred HHHHHHHHCCCCCCCCCCCCHH---HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHEEEEHHH
T ss_conf 9999985099989998999889---9999998473899999999999999987403477765442056424301322799
Q ss_pred HHHHHHHHHHHHHHHHHH---CCEEEEECCCCEEEEEECCCCCCCCEEEECCCCCCCCCEEEEEEECCCCEEEEECCCCC
Q ss_conf 499999999854489986---34059991588099982223555839996069746971899834268963999815887
Q 002668 119 AKEGVEDWRRRKQDIEAN---NRKVKVYGQDHTFVETKWKNLRVGDLVKVHKDEYFPADLLLLSSIYEDGICYVETMNLD 195 (894)
Q Consensus 119 i~~~~~d~~r~k~~~~~n---~~~~~V~r~~g~~~~i~~~~L~vGDII~i~~ge~iPaD~ilL~ss~~~G~~~Vdts~Lt 195 (894)
+..+++++|..++...++ +.+++|+| ||++++|+|++|||||||.|++||.||||++||++++ +.||||+||
T Consensus 155 ~~~~~qe~ka~~al~~L~~l~~~~a~ViR-dG~~~~I~~~eLv~GDiV~l~~Gd~VPAD~~ll~~~~----l~VdES~LT 229 (1034)
T 3ixz_A 155 CFGYYQEFKSTNIIASFKNLVPQQATVIR-DGDKFQINADQLVVGDLVEMKGGDRVPADIRILQAQG----RKVDNSSLT 229 (1034)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCEEEEEE-CCEEEEEEHHHCCCCCEEEECCCCEECCCEEEEEECC----CEEEECCCC
T ss_conf 99999999999999997624897359999-9989998889879885899857964358769997088----058833667
Q ss_pred CCCCCEECCCCHHHCCCCCHHHHCCCEEEEEEECCCCCCCEEEEEEEECCEEEECCCCCEEECCEEEEECCEEEEEEEEE
Q ss_conf 77653000210010137884444134269996169888512699999879563069765031260873068199999993
Q 002668 196 GETNLKLKRSLEATNHLRDEESFQKFTAVIKCEDPNERLYSFVGTLQYEGKQYPLSPQQILLRDSKLKNTDYVYGVVVFT 275 (894)
Q Consensus 196 GEs~~~~K~~~~~~~~~~~~~~~~~~~~~i~~e~p~~~~~~f~Gt~~~~g~~~~l~~~nii~rgs~l~nt~~~~gvVi~t 275 (894)
|||.|+.|.+..... .+.......|+||.+.+|. +.|+|++|
T Consensus 230 GES~pv~K~~~~~~~-----------------~~~~~~n~~f~GT~v~~G~---------------------~~~vVv~t 271 (1034)
T 3ixz_A 230 GESEPQTRSPECTHE-----------------SPLETRNIAFFSTMCLEGT---------------------AQGLVVNT 271 (1034)
T ss_pred CCCCCEECCCCCCCC-----------------CCCCCCCCEECCEEEEEEC---------------------CEEEEEEE
T ss_conf 887776655777665-----------------6323445122040698604---------------------24999960
Q ss_pred CCCCH---HHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 36200---220269999864299999979999999999999999999776540323689742111237899875468999
Q 002668 276 GHDTK---VMQNATDPPSKRSKIERKMDKIVYLLFSTLILISSTGSVFFGIETKRDIDGGKIRRWYLQPDDATVFYDPRR 352 (894)
Q Consensus 276 G~~Tk---~~~~~~~~~~k~s~~~~~~~~~~~~l~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~wy~~~~~~~~~~~~~~ 352 (894)
|.+|. +..+....+.+++++++.++++..++..+.++++++.++++.++.. .
T Consensus 272 G~~T~~GkI~~~~~~~~~~~tpl~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~---------~---------------- 326 (1034)
T 3ixz_A 272 GDRTIIGRIASLASGVENEKTPIAIEIEHFVDIIAGLAILFGATFFIVAMCIGY---------T---------------- 326 (1034)
T ss_pred HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---------H----------------
T ss_conf 254374089986203566789189999999999999999999999999999641---------2----------------
Q ss_pred CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCCCCEEEEEECCCCCCE
Q ss_conf 43678999999999861023214367899999999987512533223469998077237420013340399974987301
Q 002668 353 APLAAFLHFLTGLMLYGYLIPISLYISIEIVKVLQSVFINHDRDMYYEDTDKPARARTSNLNEELGQVDTILSDKTGTLT 432 (894)
Q Consensus 353 ~~~~~~~~~~~~i~ll~~~iP~sL~v~l~~~~~~~~~~l~~d~~m~~~~~~~~i~~~~~~~~e~Lg~v~~I~~DKTGTLT 432 (894)
....+..++.+++.+||++||++++++..+++.+| +++++++|+++++|+||++++||||||||||
T Consensus 327 ----~~~~~~~~i~l~v~~iPe~Lp~~vti~la~~~~rm----------ak~~~lvr~l~avE~LG~v~~IcsDKTGTLT 392 (1034)
T 3ixz_A 327 ----FLRAMVFFMAIVVAYVPEGLLATVTVCLSLTAKRL----------ASKNCVVKNLEAVETLGSTSVICSDKTGTLT 392 (1034)
T ss_pred ----HHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHH----------HHCCEEECCHHHHHHHCCCCEEECCCCCCCC
T ss_conf ----99999999999882026650899999999999987----------3388286476788861587299728978723
Q ss_pred EEEEEEEEEEECCEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCH
Q ss_conf 10029999998483036771289899997508876556888888999887643478766785556143313567899870
Q 002668 433 CNSMEFVKCSVAGVAYGRVMTEVERTLAKRKGERTFEVDDSQTDAPGLNGNIVESGKSVKGFNFRDERIMNGQWVNEPHS 512 (894)
Q Consensus 433 ~n~m~~~~~~i~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 512 (894)
+|+|.+.++++++..|.....+. ..+. ......
T Consensus 393 ~n~m~v~~~~~~~~~~~~~~~~~-----------------------------------~~~~------------~~~~~~ 425 (1034)
T 3ixz_A 393 QNRMTVSHLWFDNHIHSADTTED-----------------------------------QSGQ------------TFDQSS 425 (1034)
T ss_pred CCEEEEEEEEECCCCCCCCCCCC-----------------------------------CCCC------------CCCCCC
T ss_conf 68379999997795122567666-----------------------------------5665------------567677
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCC--CEEEEECCHHHHHHHHHHHHCCCEEEEECCCEEEEEECCCCCCCCCCEEEEEE
Q ss_conf 6899999999674241036789999--44773069409999999998396997124882699944887765311688995
Q 002668 513 DVIQKFFRVLAICHTAIPDVNEETG--EISYEAESPDEAAFVIAAREVGFQFFGSSQTSISLHELDPVSGQKVNRVYELL 590 (894)
Q Consensus 513 ~~~~~~~~~lalC~~~~~~~~~~~~--~~~~~~~sp~e~al~~~a~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~il 590 (894)
.....++.++++||++......... ......++|.|.|++.++...+..... .+..|+.+
T Consensus 426 ~~~~~l~~~~~lc~~a~~~~~~~~~~~~~~~~~gdp~e~All~~~~~~~~~~~~------------------~~~~~~~~ 487 (1034)
T 3ixz_A 426 ETWRALCRVLTLCNRAAFKSGQDAVPVPKRIVIGDASETALLKFSELTLGNAMG------------------YRERFPKV 487 (1034)
T ss_pred HHHHHHHHHHHHHCCCEECCCCCCCCCCCCEECCCCHHHHHHHHHHHHCCCHHH------------------HHHHCCCE
T ss_conf 899999999887162665357677766574355492599999999985788688------------------89748606
Q ss_pred EEECCCCCCCEEEEEEECC---CCCEEEEEECCCHHHHHHHCCC---------CHHHHHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf 6532568873148999869---9929999815605778986003---------501199999999999853883889999
Q 002668 591 HVLEFTSSRKRMSVMVRNP---ENQLLLLCKGADSVMFERLSKH---------GQQFEAETRRHINRYAEAGLRTLVIAY 658 (894)
Q Consensus 591 ~~~~F~s~rkrmsviv~~~---~~~~~l~~KGa~~~I~~~~~~~---------~~~~~~~~~~~l~~~~~~Glr~l~~A~ 658 (894)
..+||+|+||||++++... ++++++|+||||+.|+++|+.. ++..++.+.+.+++++.+|+|||++||
T Consensus 488 ~~~pF~s~rk~m~~v~~~~~~~~~~~~l~~KGApe~il~~c~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~G~RvLa~A~ 567 (1034)
T 3ixz_A 488 CEIPFNSTNKFQLSIHTLEDPRDPRHVLVMKGAPERVLERCSSILIKGQELPLDEQWREAFQTAYLSLGGLGERVLGFCQ 567 (1034)
T ss_pred EEEEECCCCCEEEEEEEECCCCCCCEEEEEECCHHHHHHHHHHHHCCCCEECCCHHHHHHHHHHHHHHHHCCCHHHEEEE
T ss_conf 99503577726899998337888608999968849999973775528964019999999999999998714758236867
Q ss_pred EECCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCHHHHHHHHHHCCCEEEEECCCCHH
Q ss_conf 92399899999999999853100049999999999840284799987532335789399999999759869999299765
Q 002668 659 RELGEDEYRIWEKEFLKAKTSVTSDREALVASAAEKIERDLILLGATAVEDKLQKGVPECIDKLAQAGIKVWVLTGDKME 738 (894)
Q Consensus 659 k~l~~~e~~~~~~~~~~a~~~~~~~r~~~~~~~~~~iE~~l~llG~~~ieD~lr~~v~~~I~~Lk~aGIkv~ilTGD~~~ 738 (894)
|.++..++..+... +. ...+.+|+||+|+|+++++||+|++++++|+.|+++||++||+|||+..
T Consensus 568 ~~l~~~~~~~~~~~----------~~-----~~~~~~e~~l~~lGlv~i~Dp~r~~~~~aI~~l~~aGI~vvmiTGd~~~ 632 (1034)
T 3ixz_A 568 LYLSEKDYPPGYAF----------DV-----EAMNFPTSGLSFAGLVSMIDPPRATVPDAVLKCRTAGIRVIMVTGDHPI 632 (1034)
T ss_pred EECCHHHCCCCCCC----------CH-----HHHHCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEECCCHH
T ss_conf 85580004321124----------53-----4430222486798887136887065999999999869969999699779
Q ss_pred HHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCHHHH
Q ss_conf 69999998277556842899828992256753102135676876898999998633101334567650899990602478
Q 002668 739 TAINIGYACSLLRQEMKQIVITLDSPDMEALEKQGDKENITKVSLESVTKQIREGISQVNSAKESKVTFGLVIDGKSLDF 818 (894)
Q Consensus 739 ta~~ia~~~gl~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvi~G~~l~~ 818 (894)
||.++|+++|+..++...+ . . .......... .......+..+++|..+..
T Consensus 633 tA~~ia~~lgi~~~~~~~i---------~------------~-----~~~~~~~~~~----~~~~~~~~~~~~~g~~l~~ 682 (1034)
T 3ixz_A 633 TAKAIAASVGIISEGSETV---------E------------D-----IAARLRVPVD----QVNRKDARACVINGMQLKD 682 (1034)
T ss_pred HHHHHHHHCCCCCCCCHHH---------H------------H-----HHHHHCCCCH----HCCCCCCCEEEEECHHHHH
T ss_conf 9999999869998872478---------8------------8-----8876176500----0254454316771676663
Q ss_pred HHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHCCCCEEEEECCCHHHHHHHHHCCCEEEEC
Q ss_conf 7118999999998611692199940761589997864049978999938943199988289109922
Q 002668 819 ALDKKLEKMFLDLAIDCASVICCRSSPKQKALVTRLVKGTGKTTLAIGDGANDVGMLQEADIGVGIS 885 (894)
Q Consensus 819 ~l~~~~~~~~~~l~~~~~~~v~~r~sP~qK~~iv~~l~~~g~~vl~iGDG~ND~~ml~~A~vGI~i~ 885 (894)
..++++ ......+...+|||++|+||..+++.++..|++|+|+|||.||++||+.||+||||+
T Consensus 683 ~~~~~l----~~~~~~~~~~v~ar~~P~~K~~iv~~lq~~g~~V~a~GDG~ND~~mLk~A~vGIAMg 745 (1034)
T 3ixz_A 683 MDPSEL----VEALRTHPEMVFARTSPQQKLVIVESCQRLGAIVAVTGDGVNDSPALKKADIGVAMG 745 (1034)
T ss_pred CCHHHH----HHHHHHCCCEEEEECCHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCEEEEEC
T ss_conf 899999----999873782699966989999999999976999999879577699999789329807
No 4
>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane protein, P-type ATPase, active transport, cryo-electron microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1
Probab=1.00 E-value=1 Score=740.96 Aligned_cols=557 Identities=18% Similarity=0.197 Sum_probs=443.6
Q ss_pred CCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 60102688897221366531344589999998778899999999884256888888710365899999997499999999
Q 002668 48 PEVVQLNYRGNYVSTTKYTAANFIPKSLFEQFRRVANIYFLVVAFVSFSPLAPYSAPSVLAPLIVVIGATMAKEGVEDWR 127 (894)
Q Consensus 48 ~~~~~~~yg~N~i~~~ky~~~~fl~~~l~~qf~~~~n~~fl~~~il~~i~~~~~~~~~~~~~l~~vi~~s~i~~~~~d~~ 127 (894)
.++|+.+||+|.+..+++++| +.|++||.++++++++++++++++. +.|.....++++++++.+.+++++++
T Consensus 93 a~~r~~~~G~N~l~~~~~~~~----~~~l~~f~~~~~~ll~~aai~s~~~----g~~~~~~~i~~vv~i~~~i~~~qe~~ 164 (920)
T 1mhs_A 93 VVQRRRKYGLNQMKEEKENHF----LKFLGFFVGPIQFVMEGAAVLAAGL----EDWVDFGVICGLLLLNAVVGFVQEFQ 164 (920)
T ss_dssp HHHHHHHTSSSSCCCCCCSSH----HHHTHHHHHHHHHHHHHHHHHCTTC----SCSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCCCCCCCHH----HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999639981588888899----9999999879999999999999999----76899999999999999999999999
Q ss_pred HHHHHHHHH---CCEEEEECCCCEEEEEECCCCCCCCEEEECCCCCCCCCEEEEEEECCCCEEEEECCCCCCCCCCEECC
Q ss_conf 854489986---34059991588099982223555839996069746971899834268963999815887776530002
Q 002668 128 RRKQDIEAN---NRKVKVYGQDHTFVETKWKNLRVGDLVKVHKDEYFPADLLLLSSIYEDGICYVETMNLDGETNLKLKR 204 (894)
Q Consensus 128 r~k~~~~~n---~~~~~V~r~~g~~~~i~~~~L~vGDII~i~~ge~iPaD~ilL~ss~~~G~~~Vdts~LtGEs~~~~K~ 204 (894)
..++.+.++ +.+++|+| ||++++|++++|+|||||.|++||.||||++|++++ +.+.||||.|||||.|+.|.
T Consensus 165 a~~a~~~L~~l~~~~a~V~R-dG~~~~I~~~eLv~GDiV~l~~Gd~VPaDg~ll~g~---~~l~VDES~LTGES~PV~K~ 240 (920)
T 1mhs_A 165 AGSIVDELKKTLALKAVVLR-DGTLKEIEAPEVVPGDILQVEEGTIIPADGRIVTDD---AFLQVDQSALTGESLAVDKH 240 (920)
T ss_dssp HHHHHHTTTTCCCSSCEEEC-SSSEEECCTTTSCTTSEEEECTTCBCSSEEEEEEES---SCCEEBCTTTSSCCCCEECC
T ss_pred HHHHHHHHHCCCCCEEEEEE-CCEEEEEEHHHCCCCCEEEECCCCCCCCCEEEEECC---CEEEEECCCCCCCCCCEEEC
T ss_conf 99999986335998799998-998999898995889789967797336656999457---22320222247888646934
Q ss_pred CCHHHCCCCCHHHHCCCEEEEEEECCCCCCCEEEEEEEECCEEEECCCCCEEECCEEEEECCEEEEEEEEECCCCHHHHC
Q ss_conf 10010137884444134269996169888512699999879563069765031260873068199999993362002202
Q 002668 205 SLEATNHLRDEESFQKFTAVIKCEDPNERLYSFVGTLQYEGKQYPLSPQQILLRDSKLKNTDYVYGVVVFTGHDTKVMQN 284 (894)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~i~~e~p~~~~~~f~Gt~~~~g~~~~l~~~nii~rgs~l~nt~~~~gvVi~tG~~Tk~~~~ 284 (894)
+++. .|+||.+.+|. +.++|++||.+|.+++.
T Consensus 241 ~gd~---------------------------v~sGT~v~~G~---------------------~~~~V~~tG~~T~~g~I 272 (920)
T 1mhs_A 241 KGDQ---------------------------VFASSAVKRGE---------------------AFVVITATGDNTFVGRA 272 (920)
T ss_dssp SSCE---------------------------ECSCBCCSCCC---------------------EEEEEEECSTTCSTTTT
T ss_pred CCCE---------------------------EECCCEEECCE---------------------EEEEEEEECCCCHHHHH
T ss_conf 7986---------------------------30376695135---------------------99999995776788899
Q ss_pred ---CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf ---69999864299999979999999999999999999776540323689742111237899875468999436789999
Q 002668 285 ---ATDPPSKRSKIERKMDKIVYLLFSTLILISSTGSVFFGIETKRDIDGGKIRRWYLQPDDATVFYDPRRAPLAAFLHF 361 (894)
Q Consensus 285 ---~~~~~~k~s~~~~~~~~~~~~l~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~wy~~~~~~~~~~~~~~~~~~~~~~~ 361 (894)
...++.+++++++.++++..+++++.++++++.++.+.+ .. . .....+
T Consensus 273 ~~lv~~a~~~~~~l~~~~~~i~~~l~~~~~~~~~i~~~~~~~---~~-----------------------~---~~~~~l 323 (920)
T 1mhs_A 273 AALVNAASGGSGHFTEVLNGIGTILLILVIFTLLIVWVSSFY---RS-----------------------N---PIVQIL 323 (920)
T ss_dssp TSSCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT---TT-----------------------C---CHHHHH
T ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CC-----------------------C---CHHHHH
T ss_conf 887764246776499999999999999999999999999884---68-----------------------8---699999
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCCCCEEEEEECCCCCCEEEEEEEEEE
Q ss_conf 99999861023214367899999999987512533223469998077237420013340399974987301100299999
Q 002668 362 LTGLMLYGYLIPISLYISIEIVKVLQSVFINHDRDMYYEDTDKPARARTSNLNEELGQVDTILSDKTGTLTCNSMEFVKC 441 (894)
Q Consensus 362 ~~~i~ll~~~iP~sL~v~l~~~~~~~~~~l~~d~~m~~~~~~~~i~~~~~~~~e~Lg~v~~I~~DKTGTLT~n~m~~~~~ 441 (894)
..++.+++.+||++||++++++...++.+| +++++++|+++.+|+||++++||||||||||+|+|.+.++
T Consensus 324 ~~av~llV~aiP~aLp~~vti~la~g~~~m----------ak~~ilvk~~~aiE~Lg~v~vIc~DKTGTLT~n~m~v~~~ 393 (920)
T 1mhs_A 324 EFTLAITIIGVPVGLPAVVTTTMAVGAAYL----------AKKKAIVQKLSAIESLAGVEILCSDKTGTLTKNKLSLHDP 393 (920)
T ss_dssp HHHHHHHHHHSCCCHHHHHHHHHHHHHHHH----------HHTTCCCCCTTTHHHHHTCCEEEEETBTTTBSSCSCCCCC
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHHHH----------HHCCEEEECCCHHHHHCCCCEEEECCCCCCCCCCEEEEEE
T ss_conf 999999987676037777899999999999----------8688387057135554367689977888755553169998
Q ss_pred EECCEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCHHHHHHHHHH
Q ss_conf 98483036771289899997508876556888888999887643478766785556143313567899870689999999
Q 002668 442 SVAGVAYGRVMTEVERTLAKRKGERTFEVDDSQTDAPGLNGNIVESGKSVKGFNFRDERIMNGQWVNEPHSDVIQKFFRV 521 (894)
Q Consensus 442 ~i~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~ 521 (894)
+..+. + .+ .+++.+
T Consensus 394 ~~~~g-~------------------------------------------------------------~~-----~~ll~~ 407 (920)
T 1mhs_A 394 YTVAG-V------------------------------------------------------------DP-----EDLMLT 407 (920)
T ss_dssp BCCSC-C------------------------------------------------------------CC-----THHHHH
T ss_pred EECCC-C------------------------------------------------------------CH-----HHHHHH
T ss_conf 50699-8------------------------------------------------------------98-----999999
Q ss_pred HHHHCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHCCCEEEEECCCEEEEEECCCCCCCCCCEEEEEEEEECCCCCCCE
Q ss_conf 96742410367899994477306940999999999839699712488269994488776531168899565325688731
Q 002668 522 LAICHTAIPDVNEETGEISYEAESPDEAAFVIAAREVGFQFFGSSQTSISLHELDPVSGQKVNRVYELLHVLEFTSSRKR 601 (894)
Q Consensus 522 lalC~~~~~~~~~~~~~~~~~~~sp~e~al~~~a~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~il~~~~F~s~rkr 601 (894)
.++|+.... .++||.|.|+++++.+.+... .....|++++.+||+|.|||
T Consensus 408 a~l~~~~~~-----------~~~~P~e~Al~~~~~~~~~~~-------------------~~~~~~~~~~~~pF~s~~k~ 457 (920)
T 1mhs_A 408 ACLAASRKK-----------KGIDAIDKAFLKSLKYYPRAK-------------------SVLSKYKVLQFHPFDPVSKK 457 (920)
T ss_dssp HHHSCCCSS-----------CSCCSHHHHHHHHHHHSSSCC-------------------GGGSCCCEEEEEEEETTTTE
T ss_pred HHHHCCCCC-----------CCCCHHHHHHHHHHHHCCCCH-------------------HHCCCCCEEEEEECCCCCCE
T ss_conf 998547766-----------689858999999999646310-------------------10135533578611677885
Q ss_pred EEEEEECCCCCEEEEEECCCHHHHHHHCCC---CHHHHHHHHHHHHHHHHCCCEEEEEEEEECCHHHHHHHHHHHHHHHH
Q ss_conf 489998699929999815605778986003---50119999999999985388388999992399899999999999853
Q 002668 602 MSVMVRNPENQLLLLCKGADSVMFERLSKH---GQQFEAETRRHINRYAEAGLRTLVIAYRELGEDEYRIWEKEFLKAKT 678 (894)
Q Consensus 602 msviv~~~~~~~~l~~KGa~~~I~~~~~~~---~~~~~~~~~~~l~~~~~~Glr~l~~A~k~l~~~e~~~~~~~~~~a~~ 678 (894)
|+++++.++|+.++|+||||+.|+++|+.. ++..++.+.+.+++|+.+|+|+|++|||..
T Consensus 458 ms~iv~~~~g~~~~~~KGape~il~~c~~~~~~~~~~~~~~~~~~~~~a~~G~RvL~vA~~~~----------------- 520 (920)
T 1mhs_A 458 VVAVVESPQGERITCVKGAPLFVLKTVEEDHPIPEEVDQAYKNKVAEFATRGFRSLGVARKRG----------------- 520 (920)
T ss_dssp EEEEECCSSSSCEEEEEECHHHHHHHCCCSSCCCHHHHHHHHHHHHHHHTSSCCCCEECCCSS-----------------
T ss_pred EEEEEEECCCCEEEEEECCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEECC-----------------
T ss_conf 999999679918999908799999861356789878899899999999867997999998326-----------------
Q ss_pred HCCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 10004999999999984028479998753233578939999999975986999929976569999998277556842899
Q 002668 679 SVTSDREALVASAAEKIERDLILLGATAVEDKLQKGVPECIDKLAQAGIKVWVLTGDKMETAINIGYACSLLRQEMKQIV 758 (894)
Q Consensus 679 ~~~~~r~~~~~~~~~~iE~~l~llG~~~ieD~lr~~v~~~I~~Lk~aGIkv~ilTGD~~~ta~~ia~~~gl~~~~~~~~~ 758 (894)
|.+++|+|+++++||+|++++++|+.|+++||++||+|||+..||.+||+++||.....
T Consensus 521 -----------------e~~l~~lGli~i~Dp~R~ea~~aI~~l~~aGI~v~MiTGD~~~TA~aIA~~lGI~~~~~---- 579 (920)
T 1mhs_A 521 -----------------EGSWEILGIMPCMDPPRHDTYKTVCEAKTLGLSIKMLTGDAVGIARETSRQLGLGTNIY---- 579 (920)
T ss_dssp -----------------SCSCCCCBBCCCCCCCCHHHHHHHHHHHHHTCEEEEEESSCHHHHHHHHHHHTSSCSCC----
T ss_pred -----------------CCCCEEEEEEEEECCCCCCHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHCCCCCCCC----
T ss_conf -----------------65307889999734321017999999862574499983897899999999849996546----
Q ss_pred EECCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCE
Q ss_conf 82899225675310213567687689899999863310133456765089999060247871189999999986116921
Q 002668 759 ITLDSPDMEALEKQGDKENITKVSLESVTKQIREGISQVNSAKESKVTFGLVIDGKSLDFALDKKLEKMFLDLAIDCASV 838 (894)
Q Consensus 759 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvi~G~~l~~~l~~~~~~~~~~l~~~~~~~ 838 (894)
+... ++++|.. ...+++ +.+... +..
T Consensus 580 -~~~~---------------------------------------------~~~~g~~--~~~~~e----l~~~~~--~~~ 605 (920)
T 1mhs_A 580 -NAER---------------------------------------------LGLGGGG--DMPGSE----VYDFVE--AAD 605 (920)
T ss_dssp -CSSS---------------------------------------------SSSCBCC--CGGGGG----GGTTTT--TTS
T ss_pred -CCCC---------------------------------------------EEECCCC--CCCHHH----HHHHHH--HCE
T ss_conf -7541---------------------------------------------2422765--589899----998775--181
Q ss_pred EEEEECCCCHHHHHHHHHCCCCEEEEECCCHHHHHHHHHCCCEEEECCCCCCCCC
Q ss_conf 9994076158999786404997899993894319998828910992282200124
Q 002668 839 ICCRSSPKQKALVTRLVKGTGKTTLAIGDGANDVGMLQEADIGVGISGVEGMQVN 893 (894)
Q Consensus 839 v~~r~sP~qK~~iv~~l~~~g~~vl~iGDG~ND~~ml~~A~vGI~i~g~eg~qaa 893 (894)
||||++|+||..+|+.++..|+.|+|+|||.||+|||+.|||||+|++ |+++|
T Consensus 606 V~arv~P~~K~~iV~~Lq~~g~~Vam~GDGvNDapaLk~AdvGIAmg~--gtd~a 658 (920)
T 1mhs_A 606 GFAEVFPQHKYNVVEILQQRGYLVAMTGDGVNDAPSLKKADTGIAVEG--SSDAA 658 (920)
T ss_dssp CEESCCSTHHHHHHHHHHTTTCCCEECCCCGGGHHHHHHSSEEEEETT--SCHHH
T ss_pred EEEEECHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHCCCCCCCCC--CCHHH
T ss_conf 999837999999999999679969998288100999985786740564--33999
No 5
>3b8c_A ATPase 2, plasma membrane-type; P-type ATPase, proton pump, ATP-binding, hydrogen ION transport, hydrolase, ION transport; HET: ACP; 3.60A {Arabidopsis thaliana}
Probab=1.00 E-value=1 Score=737.43 Aligned_cols=566 Identities=20% Similarity=0.206 Sum_probs=434.5
Q ss_pred CCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC---CCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 9601026888972213665313445899999987788999999998842568---8888871036589999999749999
Q 002668 47 NPEVVQLNYRGNYVSTTKYTAANFIPKSLFEQFRRVANIYFLVVAFVSFSPL---APYSAPSVLAPLIVVIGATMAKEGV 123 (894)
Q Consensus 47 ~~~~~~~~yg~N~i~~~ky~~~~fl~~~l~~qf~~~~n~~fl~~~il~~i~~---~~~~~~~~~~~l~~vi~~s~i~~~~ 123 (894)
+.++|+.+||+|.+..+++++| +.|++||.+|++++++++++++++.. .....|...+.++++++++.+.+++
T Consensus 37 e~~~r~~~~G~N~l~~~~~~~~----~~~l~~~~~p~~~il~~aaiis~~l~~~~~~~~~~~~~~~I~~~v~i~~~l~~~ 112 (885)
T 3b8c_A 37 EGEDRIQIFGPNKLEEKKESKL----LKFLGFMWNPLSWVMEMAAIMAIALANGDGRPPDWQDFVGIICLLVINSTISFI 112 (885)
T ss_dssp HHHHHSSSCCSCCTTTTCCCTT----SSTTSCCCGGGSSHHHHHHHGGGGSSCCTTSCSCCTTHHHHHHHTTTTTTTTTT
T ss_pred HHHHHHHHCCCCCCCCCCCCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999998519971588788799----999999999999999999999999970456630188999999999999999999
Q ss_pred HHHHHHHHHHHH---HCCEEEEECCCCEEEEEECCCCCCCCEEEECCCCCCCCCEEEEEEECCCCEEEEECCCCCCCCCC
Q ss_conf 999985448998---63405999158809998222355583999606974697189983426896399981588777653
Q 002668 124 EDWRRRKQDIEA---NNRKVKVYGQDHTFVETKWKNLRVGDLVKVHKDEYFPADLLLLSSIYEDGICYVETMNLDGETNL 200 (894)
Q Consensus 124 ~d~~r~k~~~~~---n~~~~~V~r~~g~~~~i~~~~L~vGDII~i~~ge~iPaD~ilL~ss~~~G~~~Vdts~LtGEs~~ 200 (894)
+++|..++.+.+ .+.+++|+| ||++++|++++|+|||||.|++||.||||++|+++++ +.||||.|||||.|
T Consensus 113 qe~ka~~al~~L~~~~~~~a~V~R-dG~~~~I~~~~Lv~GDiV~l~~Gd~IPaDg~ll~g~~----l~VdES~LTGES~P 187 (885)
T 3b8c_A 113 EENNAGNAAAALMAGLAPKTKVLR-DGKWSEQEAAILVPGDIVSIKLGDIIPADARLLEGDP----LKVDQSALTGESLP 187 (885)
T ss_dssp TTTTTTTHHHHTTTSCSCCCCCCC-SSCSCCCCTTTTCTTSBCCCCSSCCCSSCCCCCCSSC----BCCCCCSTTCCSSC
T ss_pred HHHHHHHHHHHHHCCCCCEEEEEE-CCEEEEEEHHHCCCCCEEEECCCCEEEECEEEEECCC----CCCCCCCCCCCCCC
T ss_conf 999999999997334998699999-9989998989979897899889999930359997675----40034446888864
Q ss_pred EECCCCHHHCCCCCHHHHCCCEEEEEEECCCCCCCEEEEEEEECCEEEECCCCCEEECCEEEEECCEEEEEEEEECCCCH
Q ss_conf 00021001013788444413426999616988851269999987956306976503126087306819999999336200
Q 002668 201 KLKRSLEATNHLRDEESFQKFTAVIKCEDPNERLYSFVGTLQYEGKQYPLSPQQILLRDSKLKNTDYVYGVVVFTGHDTK 280 (894)
Q Consensus 201 ~~K~~~~~~~~~~~~~~~~~~~~~i~~e~p~~~~~~f~Gt~~~~g~~~~l~~~nii~rgs~l~nt~~~~gvVi~tG~~Tk 280 (894)
+.|.+++.. |+||.+.+|. +.++|++||.+|.
T Consensus 188 v~K~~g~~v---------------------------~~GT~v~~G~---------------------~~~~V~~tG~~T~ 219 (885)
T 3b8c_A 188 VTKHPGQEV---------------------------FSGSTCKQGE---------------------IEAVVIATGVHTF 219 (885)
T ss_dssp CCBSSCCCC---------------------------CSCCCCCSCC---------------------CCCBCCSCTTTTT
T ss_pred EEECCCCCC---------------------------CCCEEEEEEE---------------------EEEEEEECCCCCH
T ss_conf 583489830---------------------------2675995117---------------------9999997573019
Q ss_pred HHHCCC--CCCCCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 220269--99986429999997999999999-999999999977654032368974211123789987546899943678
Q 002668 281 VMQNAT--DPPSKRSKIERKMDKIVYLLFST-LILISSTGSVFFGIETKRDIDGGKIRRWYLQPDDATVFYDPRRAPLAA 357 (894)
Q Consensus 281 ~~~~~~--~~~~k~s~~~~~~~~~~~~l~~~-~~~~~~i~~i~~~~~~~~~~~~~~~~~wy~~~~~~~~~~~~~~~~~~~ 357 (894)
+++... ....+++++++.++++..+++.+ .+.++++.++. |.... ..|.
T Consensus 220 ~g~i~~lv~~~~~~~~lq~~~~~i~~~~~~~~~~~~~~~~~~~---~~~~~------~~~~------------------- 271 (885)
T 3b8c_A 220 FGKAAHLVDSTNQVGHFQKVLTAIGNFCICSIAIGMVIEIIVM---YPIQR------RKYR------------------- 271 (885)
T ss_dssp STTCCCSCCSCSCCSTTTTTTHHHHHHHHHHHHHHHHHHSTTT---TTTTC------SCST-------------------
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHCC------CCHH-------------------
T ss_conf 9999999864644684999999999999999999999999999---99806------8699-------------------
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCCCCEEEEEECCCCCCEEEEEE
Q ss_conf 99999999986102321436789999999998751253322346999807723742001334039997498730110029
Q 002668 358 FLHFLTGLMLYGYLIPISLYISIEIVKVLQSVFINHDRDMYYEDTDKPARARTSNLNEELGQVDTILSDKTGTLTCNSME 437 (894)
Q Consensus 358 ~~~~~~~i~ll~~~iP~sL~v~l~~~~~~~~~~l~~d~~m~~~~~~~~i~~~~~~~~e~Lg~v~~I~~DKTGTLT~n~m~ 437 (894)
..+..++.+++.+||++||++++++..+++.++ +++++++|+++.+|+||++++||||||||||+|+|.
T Consensus 272 -~~~~~~v~llv~aiP~aLp~~vti~la~g~~r~----------ak~~ilvk~~~aiE~Lg~v~~Ic~DKTGTLT~n~m~ 340 (885)
T 3b8c_A 272 -DGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRL----------SQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLS 340 (885)
T ss_dssp -THHHHHHHHTTTTCCSSTTTHHHHTTTHHHHHH----------TTTSCCCSSGGGHHHHTTCCCCEEECCCCCSCCCCC
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHCCEEECCCHHHHHHHCCCEEEECCCCCCCCCCEE
T ss_conf -999999999999703689999999999999999----------719869689518889767998998799876168527
Q ss_pred EEEEEECCEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCHHHHHH
Q ss_conf 99999848303677128989999750887655688888899988764347876678555614331356789987068999
Q 002668 438 FVKCSVAGVAYGRVMTEVERTLAKRKGERTFEVDDSQTDAPGLNGNIVESGKSVKGFNFRDERIMNGQWVNEPHSDVIQK 517 (894)
Q Consensus 438 ~~~~~i~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ 517 (894)
+.++++. .++. .....+
T Consensus 341 v~~~~~~--~~~~-------------------------------------------------------------~~~~~~ 357 (885)
T 3b8c_A 341 VDKNLVE--VFCK-------------------------------------------------------------GVEKDQ 357 (885)
T ss_dssp CCSCCCC--SSCS-------------------------------------------------------------STTHHH
T ss_pred EEEEEEE--CCCC-------------------------------------------------------------CCCHHH
T ss_conf 9987775--1589-------------------------------------------------------------999999
Q ss_pred HHHHHHHHCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHCCCEEEEECCCEEEEEECCCCCCCCCCEEEEEEEEECCCC
Q ss_conf 99999674241036789999447730694099999999983969971248826999448877653116889956532568
Q 002668 518 FFRVLAICHTAIPDVNEETGEISYEAESPDEAAFVIAAREVGFQFFGSSQTSISLHELDPVSGQKVNRVYELLHVLEFTS 597 (894)
Q Consensus 518 ~~~~lalC~~~~~~~~~~~~~~~~~~~sp~e~al~~~a~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~il~~~~F~s 597 (894)
++...++|+... .+||.|.|+++++.... . .+..|++++.+||+|
T Consensus 358 ll~~aa~~~~~~-------------~~~p~~~Al~~~~~~~~-----------------~-----~~~~~~~~~~~pF~s 402 (885)
T 3b8c_A 358 VLLFAAMASRVE-------------NQDAIDAAMVGMLADPK-----------------E-----ARAGIREVHFLPFNP 402 (885)
T ss_dssp HHHHHHHHCCSS-------------SCCSHHHHHHHTTCCTT-----------------C-----CCCSSCCBCCCCCCT
T ss_pred HHHHHHHHHCCC-------------CCCCHHHHHHHHHHCHH-----------------H-----HHHCCCEEECCCCCC
T ss_conf 999999972788-------------99915899999864636-----------------5-----762483220135785
Q ss_pred CCCEEEEEEECCCCCEEEEEECCCHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEECCHHHHHHHHHHHHHHH
Q ss_conf 87314899986999299998156057789860035011999999999998538838899999239989999999999985
Q 002668 598 SRKRMSVMVRNPENQLLLLCKGADSVMFERLSKHGQQFEAETRRHINRYAEAGLRTLVIAYRELGEDEYRIWEKEFLKAK 677 (894)
Q Consensus 598 ~rkrmsviv~~~~~~~~l~~KGa~~~I~~~~~~~~~~~~~~~~~~l~~~~~~Glr~l~~A~k~l~~~e~~~~~~~~~~a~ 677 (894)
.||||+++++..+|+.++|+||||+.|+++|+.. ...++.+.+.+++|+.+|+|+|++|+|++++.+
T Consensus 403 ~~k~~sv~~~~~~g~~~~~~KGa~e~il~~c~~~-~~~~~~~~~~~~~~a~~G~rvl~vA~~~~~~~~------------ 469 (885)
T 3b8c_A 403 VDKRTALTYIDGSGNWHRVSKGAPEQILELAKAS-NDLSKKVLSIIDKYAERGLRSLAVARQVVPEKT------------ 469 (885)
T ss_dssp TTCCCCCBBCSSSSCBCBCCCCSGGGTSSSSCCC-STTTTTHHHHHHHHTTTTCEEEEECCBCCCSSS------------
T ss_pred CCCEEEEEEEECCCCEEEEEECCHHHHHHHCCCC-HHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCC------------
T ss_conf 2256899998048968999948899999764586-445799999999998579869999994466433------------
Q ss_pred HHCCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHCCCCCCCCEEE
Q ss_conf 31000499999999998402847999875323357893999999997598699992997656999999827755684289
Q 002668 678 TSVTSDREALVASAAEKIERDLILLGATAVEDKLQKGVPECIDKLAQAGIKVWVLTGDKMETAINIGYACSLLRQEMKQI 757 (894)
Q Consensus 678 ~~~~~~r~~~~~~~~~~iE~~l~llG~~~ieD~lr~~v~~~I~~Lk~aGIkv~ilTGD~~~ta~~ia~~~gl~~~~~~~~ 757 (894)
.+..|++++|+|+++++||+|++++++|+.|+++||++||+|||+..||.+||+++||..+..+
T Consensus 470 --------------~~~~e~~l~~lGli~i~Dp~R~~a~~aI~~l~~aGI~v~MiTGD~~~tA~~iA~~lGi~~~~~~-- 533 (885)
T 3b8c_A 470 --------------KESPGAPWEFVGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYP-- 533 (885)
T ss_dssp --------------SSCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHTTCCCEEEESSCHHHHTHHHHTTTCTTCCST--
T ss_pred --------------CCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHCCCCCCCC--
T ss_conf --------------1113567579999996066612089999999976996899939986999999998097646677--
Q ss_pred EEECCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCHHHHHHH-HHHHHHHHHHHHCCC
Q ss_conf 9828992256753102135676876898999998633101334567650899990602478711-899999999861169
Q 002668 758 VITLDSPDMEALEKQGDKENITKVSLESVTKQIREGISQVNSAKESKVTFGLVIDGKSLDFALD-KKLEKMFLDLAIDCA 836 (894)
Q Consensus 758 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvi~G~~l~~~l~-~~~~~~~~~l~~~~~ 836 (894)
.. ++.|..+...+. .++. ++...
T Consensus 534 ---~~-----------------------------------------------~l~g~~~~~~~~~~~l~----~~~~~-- 557 (885)
T 3b8c_A 534 ---SS-----------------------------------------------ALLGTHKDANLASIPVE----ELIEK-- 557 (885)
T ss_dssp ---TS-----------------------------------------------SCCBGGGGTTSCCSCHH----HHHHT--
T ss_pred ---CC-----------------------------------------------EEECCCCCCCCCHHHHH----HHHHH--
T ss_conf ---51-----------------------------------------------44555312224635799----99863--
Q ss_pred CEEEEEECCCCHHHHHHHHHCCCCEEEEECCCHHHHHHHHHCCCEEEECCCCCCCCC
Q ss_conf 219994076158999786404997899993894319998828910992282200124
Q 002668 837 SVICCRSSPKQKALVTRLVKGTGKTTLAIGDGANDVGMLQEADIGVGISGVEGMQVN 893 (894)
Q Consensus 837 ~~v~~r~sP~qK~~iv~~l~~~g~~vl~iGDG~ND~~ml~~A~vGI~i~g~eg~qaa 893 (894)
..||+|++|+||..+|+.++..|+.|+|+|||.||+|||++|||||+|++ |+++|
T Consensus 558 ~~v~arv~P~~K~~iV~~lq~~g~~Vam~GDGvNDapaLk~AdvGIAmg~--gtd~a 612 (885)
T 3b8c_A 558 ADGFAGVFPEHKYEIVKKLQERKHIVGMTGDGVNDAPALKKADIGIAVAD--ATDAA 612 (885)
T ss_dssp SCCEECCCHHHHHHHHHHHHHTTCCCCBCCCSSTTHHHHHHSSSCCCCSS--SHHHH
T ss_pred CCEEEEECHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHCCEEEEECC--CCHHH
T ss_conf 86898878999999999999779969997598122999986997599577--12999
No 6
>3rfu_A Copper efflux ATPase; alpha helical, CPC, CXXC, ATP-binding, hydrolase, ION transp magnesium, Cu+, membrane, metal-binding; 3.20A {Legionella pneumophila subsp}
Probab=1.00 E-value=1 Score=563.40 Aligned_cols=449 Identities=21% Similarity=0.272 Sum_probs=363.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH------HCCEEEEECCCCEEEEEECCCCCCCCEEEECCCCCCCCCEEEEEEEC
Q ss_conf 589999999749999999985448998------63405999158809998222355583999606974697189983426
Q 002668 109 PLIVVIGATMAKEGVEDWRRRKQDIEA------NNRKVKVYGQDHTFVETKWKNLRVGDLVKVHKDEYFPADLLLLSSIY 182 (894)
Q Consensus 109 ~l~~vi~~s~i~~~~~d~~r~k~~~~~------n~~~~~V~r~~g~~~~i~~~~L~vGDII~i~~ge~iPaD~ilL~ss~ 182 (894)
...+++++..+..++|.+.++++.+.+ .+.+++|+|+||++++|++++|+|||||.|++||.||||++|++
T Consensus 190 ~a~~ii~~~llg~~le~~a~~~~~~ai~~L~~l~p~~a~vv~~dg~~~~v~~~~l~~GDiv~v~~Ge~IPaDg~vl~--- 266 (736)
T 3rfu_A 190 AAAVITTLVLLGQVLELKAREQTGSAIRALLKLVPESAHRIKEDGSEEEVSLDNVAVGDLLRVRPGEKIPVDGEVQE--- 266 (736)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCSSHHHHHTCCCCCEEEEEETTEEEEEEETTTCCTTCEECCCSSEECCSCEEECS---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCEEEEEEHHHCCCCCEEEECCCCCCCCCEEEEE---
T ss_conf 99999999999999999999999999999883399889999529989998776689898899879975156379997---
Q ss_pred CCCEEEEECCCCCCCCCCEECCCCHHHCCCCCHHHHCCCEEEEEEECCCCCCCEEEEEEEECCEEEECCCCCEEECCEEE
Q ss_conf 89639998158877765300021001013788444413426999616988851269999987956306976503126087
Q 002668 183 EDGICYVETMNLDGETNLKLKRSLEATNHLRDEESFQKFTAVIKCEDPNERLYSFVGTLQYEGKQYPLSPQQILLRDSKL 262 (894)
Q Consensus 183 ~~G~~~Vdts~LtGEs~~~~K~~~~~~~~~~~~~~~~~~~~~i~~e~p~~~~~~f~Gt~~~~g~~~~l~~~nii~rgs~l 262 (894)
|.++||||+|||||.|+.|.+++.. |+||++.+|.
T Consensus 267 --G~~~VDES~LTGES~Pv~K~~gd~v---------------------------~~Gt~~~~G~---------------- 301 (736)
T 3rfu_A 267 --GRSFVDESMVTGEPIPVAKEASAKV---------------------------IGATINQTGS---------------- 301 (736)
T ss_dssp --SCEEEECSSSTTCSSCEEECTTCEE---------------------------CTTCEEESCC----------------
T ss_pred --CCEEEEECCCCCCCCCEEECCCCCC---------------------------CCCEEECCCE----------------
T ss_conf --8667651235786142783168867---------------------------7864861450----------------
Q ss_pred EECCEEEEEEEEECCCC---HHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 30681999999933620---022026999986429999997999999999999999999977654032368974211123
Q 002668 263 KNTDYVYGVVVFTGHDT---KVMQNATDPPSKRSKIERKMDKIVYLLFSTLILISSTGSVFFGIETKRDIDGGKIRRWYL 339 (894)
Q Consensus 263 ~nt~~~~gvVi~tG~~T---k~~~~~~~~~~k~s~~~~~~~~~~~~l~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~wy~ 339 (894)
+.+.|++||.+| ++.+....++.+++++++..+++..+++++.++++++.+++|.++.... .|
T Consensus 302 -----~~~~v~~~G~~T~l~~I~~lv~~a~~~k~~~q~~~d~~a~~~v~~vl~ia~~~~~~w~~~~~~~-------~~-- 367 (736)
T 3rfu_A 302 -----FVMKALHVGSDTMLARIVQMVSDAQRSRAPIQRLADTVSGWFVPAVILVAVLSFIVWALLGPQP-------AL-- 367 (736)
T ss_dssp -----CCEEECCCSTTSHHHHHHHHHHHHHSSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSS-------ST--
T ss_pred -----EEEEEEEECHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-------HH--
T ss_conf -----9999998412259999999999743268979999999999999999999999999999967873-------29--
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCCCC
Q ss_conf 78998754689994367899999999986102321436789999999998751253322346999807723742001334
Q 002668 340 QPDDATVFYDPRRAPLAAFLHFLTGLMLYGYLIPISLYISIEIVKVLQSVFINHDRDMYYEDTDKPARARTSNLNEELGQ 419 (894)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~i~ll~~~iP~sL~v~l~~~~~~~~~~l~~d~~m~~~~~~~~i~~~~~~~~e~Lg~ 419 (894)
...+..++.+++.+|||+|+++++++...++.++ +++++++|+++.+|.||+
T Consensus 368 ------------------~~~l~~ai~vlviacPcaL~la~p~a~~~~~~~~----------a~~gilvk~~~alE~l~~ 419 (736)
T 3rfu_A 368 ------------------SYGLIAAVSVLIIACPCALGLATPMSIMVGVGKG----------AQSGVLIKNAEALERMEK 419 (736)
T ss_dssp ------------------THHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHHH----------HHTTEEESCHHHHHHHTS
T ss_pred ------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHCCEEECHHHHHHHHCC
T ss_conf ------------------9999998774877324278888999999999997----------515133233789998627
Q ss_pred EEEEEECCCCCCEEEEEEEEEEEECCEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 03999749873011002999999848303677128989999750887655688888899988764347876678555614
Q 002668 420 VDTILSDKTGTLTCNSMEFVKCSVAGVAYGRVMTEVERTLAKRKGERTFEVDDSQTDAPGLNGNIVESGKSVKGFNFRDE 499 (894)
Q Consensus 420 v~~I~~DKTGTLT~n~m~~~~~~i~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 499 (894)
|++||||||||||+|+|.+.+++..+..
T Consensus 420 v~~i~fDKTGTLT~g~~~v~~i~~~~~~---------------------------------------------------- 447 (736)
T 3rfu_A 420 VNTLVVDKTGTLTEGHPKLTRIVTDDFV---------------------------------------------------- 447 (736)
T ss_dssp CCEEEECCBTTTBCSSCEEEEEEESSSC----------------------------------------------------
T ss_pred CCEEEEECCCCCCCCCEEEEEEEECCCC----------------------------------------------------
T ss_conf 9999981898875895279999834887----------------------------------------------------
Q ss_pred HHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHCCCEEEEECCCEEEEEECCCCC
Q ss_conf 33135678998706899999999674241036789999447730694099999999983969971248826999448877
Q 002668 500 RIMNGQWVNEPHSDVIQKFFRVLAICHTAIPDVNEETGEISYEAESPDEAAFVIAAREVGFQFFGSSQTSISLHELDPVS 579 (894)
Q Consensus 500 ~l~~~~~~~~~~~~~~~~~~~~lalC~~~~~~~~~~~~~~~~~~~sp~e~al~~~a~~~g~~~~~~~~~~~~i~~~~~~~ 579 (894)
..+++...+.+ ++.++||.+.|+++++++.|+.+.
T Consensus 448 ---------------~~~~l~~aa~l--------------e~~s~hPla~Aiv~~a~~~~~~~~---------------- 482 (736)
T 3rfu_A 448 ---------------EDNALALAAAL--------------EHQSEHPLANAIVHAAKEKGLSLG---------------- 482 (736)
T ss_dssp ---------------HHHHHHHHHHH--------------HHSSCCHHHHHHHHHHHTTCCCCC----------------
T ss_pred ---------------HHHHHHHHHHH--------------HHCCCCHHHHHHHHHHHHCCCCCC----------------
T ss_conf ---------------78999999998--------------622899289999999996599866----------------
Q ss_pred CCCCCEEEEEEEEECCCCCCCEEEEEEECCCCCEEEEEECCCHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEE
Q ss_conf 65311688995653256887314899986999299998156057789860035011999999999998538838899999
Q 002668 580 GQKVNRVYELLHVLEFTSSRKRMSVMVRNPENQLLLLCKGADSVMFERLSKHGQQFEAETRRHINRYAEAGLRTLVIAYR 659 (894)
Q Consensus 580 ~~~~~~~~~il~~~~F~s~rkrmsviv~~~~~~~~l~~KGa~~~I~~~~~~~~~~~~~~~~~~l~~~~~~Glr~l~~A~k 659 (894)
...+|++.+++. +.... +++ .+.+|+++.+.+.... .....+.+++++.+|+|++++|+
T Consensus 483 -----------~~~~f~~~~g~g-v~~~~-~g~--~~~~G~~~~~~~~~~~-----~~~~~~~~~~~~~~G~~vl~va~- 541 (736)
T 3rfu_A 483 -----------SVEAFEAPTGKG-VVGQV-DGH--HVAIGNARLMQEHGGD-----NAPLFEKADELRGKGASVMFMAV- 541 (736)
T ss_dssp -----------CCSCCCCCTTTE-EEECS-SSS--CEEEESHHHHHHHCCC-----CHHHHHHHHHHHHTTCEEEEEEE-
T ss_pred -----------CCCCCCCCCCCE-EEEEE-CCE--EEEECCHHHHHHCCCC-----HHHHHHHHHHHHHCCCEEEEEEE-
T ss_conf -----------754320248865-89999-998--9997389999873997-----16789999999856986999987-
Q ss_pred ECCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCHHHHHHHHHHCCCEEEEECCCCHHH
Q ss_conf 23998999999999998531000499999999998402847999875323357893999999997598699992997656
Q 002668 660 ELGEDEYRIWEKEFLKAKTSVTSDREALVASAAEKIERDLILLGATAVEDKLQKGVPECIDKLAQAGIKVWVLTGDKMET 739 (894)
Q Consensus 660 ~l~~~e~~~~~~~~~~a~~~~~~~r~~~~~~~~~~iE~~l~llG~~~ieD~lr~~v~~~I~~Lk~aGIkv~ilTGD~~~t 739 (894)
|.+++|+++++|++|++++++|+.|+++||+++|+|||+..+
T Consensus 542 --------------------------------------d~~~~G~i~i~D~i~~~~~~aI~~L~~~Gi~v~mlTGd~~~~ 583 (736)
T 3rfu_A 542 --------------------------------------DGKTVALLVVEDPIKSSTPETILELQQSGIEIVMLTGDSKRT 583 (736)
T ss_dssp --------------------------------------TTEEEEEEEEECCBCSSHHHHHHHHHHHTCEEEEECSSCHHH
T ss_pred --------------------------------------CCEEEEEEEEECCCHHHHHHHHHHHHHCCCEEEEECCCCHHH
T ss_conf --------------------------------------998999998503220309999999998799499987989899
Q ss_pred HHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCHHHHH
Q ss_conf 99999982775568428998289922567531021356768768989999986331013345676508999906024787
Q 002668 740 AINIGYACSLLRQEMKQIVITLDSPDMEALEKQGDKENITKVSLESVTKQIREGISQVNSAKESKVTFGLVIDGKSLDFA 819 (894)
Q Consensus 740 a~~ia~~~gl~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvi~G~~l~~~ 819 (894)
|..+|+++|+.
T Consensus 584 a~~ia~~lgi~--------------------------------------------------------------------- 594 (736)
T 3rfu_A 584 AEAVAGTLGIK--------------------------------------------------------------------- 594 (736)
T ss_dssp HHHHHHHHTCC---------------------------------------------------------------------
T ss_pred HHHHHHHCCCC---------------------------------------------------------------------
T ss_conf 99999985998---------------------------------------------------------------------
Q ss_pred HHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHCCCCEEEEECCCHHHHHHHHHCCCEEEECCCCCCCC
Q ss_conf 1189999999986116921999407615899978640499789999389431999882891099228220012
Q 002668 820 LDKKLEKMFLDLAIDCASVICCRSSPKQKALVTRLVKGTGKTTLAIGDGANDVGMLQEADIGVGISGVEGMQV 892 (894)
Q Consensus 820 l~~~~~~~~~~l~~~~~~~v~~r~sP~qK~~iv~~l~~~g~~vl~iGDG~ND~~ml~~A~vGI~i~g~eg~qa 892 (894)
.++++++|++|..+++.++..++.|+|+|||.||++||+.||+||+|++ |+++
T Consensus 595 ------------------~v~a~~~P~~K~~~v~~l~~~g~~V~~vGDG~ND~paL~~AdvGIAmg~--g~d~ 647 (736)
T 3rfu_A 595 ------------------KVVAEIMPEDKSRIVSELKDKGLIVAMAGDGVNDAPALAKADIGIAMGT--GTDV 647 (736)
T ss_dssp ------------------CEECSCCHHHHHHHHHHHHHHSCCEEEEECSSTTHHHHHHSSEEEEESS--SCSH
T ss_pred ------------------EEEEECCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCEEEEECC--CCHH
T ss_conf ------------------7997069999999999999669989999898576999986997799478--6599
No 7
>3j09_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus}
Probab=1.00 E-value=1 Score=552.13 Aligned_cols=442 Identities=20% Similarity=0.276 Sum_probs=352.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH------HHHHCCEEEEECCCCEEEEEECCCCCCCCEEEECCCCCCCCCEEEEEEECCC
Q ss_conf 9999999749999999985448------9986340599915880999822235558399960697469718998342689
Q 002668 111 IVVIGATMAKEGVEDWRRRKQD------IEANNRKVKVYGQDHTFVETKWKNLRVGDLVKVHKDEYFPADLLLLSSIYED 184 (894)
Q Consensus 111 ~~vi~~s~i~~~~~d~~r~k~~------~~~n~~~~~V~r~~g~~~~i~~~~L~vGDII~i~~ge~iPaD~ilL~ss~~~ 184 (894)
++++++..+.++++++.++++. ..+.+.+++|+| ||++++|++++|+|||||.|++||.||||++|++
T Consensus 178 ~~i~~~~~ig~~le~~~~~~~~~~i~~l~~l~~~~a~v~r-~g~~~~i~~~~l~~GDiv~v~~Ge~IPaDg~vl~----- 251 (723)
T 3j09_A 178 VLLLAFLLLGRTLEARAKSRTGEAIKKLVGLQAKTAVVIR-DGKEIAVPVEEVAVGDIVIVRPGEKIPVDGVVVE----- 251 (723)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCTTHHHHHTSCSEEEEEE-TTEEEEEEGGGCCTTCEEEECTTCBCCSEEEEEE-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEE-CCEEEEEEHHHCCCCCEEEECCCCEEEEEEEEEE-----
T ss_conf 9999999999999999999999999888726997569998-9989998989979998999889998856799997-----
Q ss_pred CEEEEECCCCCCCCCCEECCCCHHHCCCCCHHHHCCCEEEEEEECCCCCCCEEEEEEEECCEEEECCCCCEEECCEEEEE
Q ss_conf 63999815887776530002100101378844441342699961698885126999998795630697650312608730
Q 002668 185 GICYVETMNLDGETNLKLKRSLEATNHLRDEESFQKFTAVIKCEDPNERLYSFVGTLQYEGKQYPLSPQQILLRDSKLKN 264 (894)
Q Consensus 185 G~~~Vdts~LtGEs~~~~K~~~~~~~~~~~~~~~~~~~~~i~~e~p~~~~~~f~Gt~~~~g~~~~l~~~nii~rgs~l~n 264 (894)
|.++||||+|||||.|+.|.+++.. |+||++.+|
T Consensus 252 G~~~VdeS~LTGES~pv~K~~g~~v---------------------------~~Gt~~~~g------------------- 285 (723)
T 3j09_A 252 GESYVDESMISGEPVPVLKSKGDEV---------------------------FGATINNTG------------------- 285 (723)
T ss_dssp CCEEEECHHHHCCSSCEEECTTCEE---------------------------CTTCEECSS-------------------
T ss_pred CCEEEECCCCCCCCCCEEECCCCEE---------------------------CCCEEEECC-------------------
T ss_conf 7768860001388764663689823---------------------------041697067-------------------
Q ss_pred CCEEEEEEEEECCCC---HHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 681999999933620---02202699998642999999799999999999999999997765403236897421112378
Q 002668 265 TDYVYGVVVFTGHDT---KVMQNATDPPSKRSKIERKMDKIVYLLFSTLILISSTGSVFFGIETKRDIDGGKIRRWYLQP 341 (894)
Q Consensus 265 t~~~~gvVi~tG~~T---k~~~~~~~~~~k~s~~~~~~~~~~~~l~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~wy~~~ 341 (894)
++.++|++||.+| ++.+....++.+++++++.++++..++++++++++++.++.|.++... +|
T Consensus 286 --~~~~~v~~~g~~T~l~~i~~lv~~a~~~k~~~~~~~d~~~~~~~~~vl~~a~~~~~~~~~~~~~--------~~---- 351 (723)
T 3j09_A 286 --VLKIRATRVGGETLLAQIVKLVEDAMGSKPPIQRLADKVVAYFIPTVLLVAISAFIYWYFIAHA--------PL---- 351 (723)
T ss_dssp --CEEEEEEECGGGSHHHHHHHHHSSSCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSSTTC--------TT----
T ss_pred --CEEEEEEEECCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--------CH----
T ss_conf --2999999846743999999999975346983899999999999999999999999999985688--------69----
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCCCCEE
Q ss_conf 99875468999436789999999998610232143678999999999875125332234699980772374200133403
Q 002668 342 DDATVFYDPRRAPLAAFLHFLTGLMLYGYLIPISLYISIEIVKVLQSVFINHDRDMYYEDTDKPARARTSNLNEELGQVD 421 (894)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~i~ll~~~iP~sL~v~l~~~~~~~~~~l~~d~~m~~~~~~~~i~~~~~~~~e~Lg~v~ 421 (894)
...+..++.+++..|||+|+++++++...++.++ +++++++|+++.+|.||+++
T Consensus 352 ----------------~~~~~~~i~vlvia~P~aL~la~p~a~~~~~~~~----------a~~gilvk~~~~lE~lg~v~ 405 (723)
T 3j09_A 352 ----------------LFAFTTLIAVLVVACPCAFGLATPTALTVGMGKG----------AELGILIKNADALEVAEKVT 405 (723)
T ss_dssp ----------------CCSHHHHHHHHHHHSCTTHHHHHHHHHHHHHHHH----------HTTTCEESSTTHHHHGGGCC
T ss_pred ----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHCCEEEECHHHHHHHHCCC
T ss_conf ----------------9999999999975026789999999999999999----------98893894828998762498
Q ss_pred EEEECCCCCCEEEEEEEEEEEECCEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 99974987301100299999984830367712898999975088765568888889998876434787667855561433
Q 002668 422 TILSDKTGTLTCNSMEFVKCSVAGVAYGRVMTEVERTLAKRKGERTFEVDDSQTDAPGLNGNIVESGKSVKGFNFRDERI 501 (894)
Q Consensus 422 ~I~~DKTGTLT~n~m~~~~~~i~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l 501 (894)
+||||||||||+|+|.+.+++..+..
T Consensus 406 ~i~fDKTGTLT~g~~~v~~~~~~~~~------------------------------------------------------ 431 (723)
T 3j09_A 406 AVIFDKTGTLTKGKPEVTDLVPLNGD------------------------------------------------------ 431 (723)
T ss_dssp EEEEEHHHHTSCSCCEEEEEEESSSC------------------------------------------------------
T ss_pred EEEECCCCCCCCCCEEEEEEEECCCC------------------------------------------------------
T ss_conf 99984777552696279999807999------------------------------------------------------
Q ss_pred HCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHCCCEEEEECCCEEEEEECCCCCCC
Q ss_conf 13567899870689999999967424103678999944773069409999999998396997124882699944887765
Q 002668 502 MNGQWVNEPHSDVIQKFFRVLAICHTAIPDVNEETGEISYEAESPDEAAFVIAAREVGFQFFGSSQTSISLHELDPVSGQ 581 (894)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~lalC~~~~~~~~~~~~~~~~~~~sp~e~al~~~a~~~g~~~~~~~~~~~~i~~~~~~~~~ 581 (894)
..+++...+.+.. .++||++.|+++++...|+.+....
T Consensus 432 -------------~~~~l~~aa~~e~--------------~s~hP~~~Ai~~~a~~~~~~~~~~~--------------- 469 (723)
T 3j09_A 432 -------------ERELLRLAAIAER--------------RSEHPIAEAIVKKALEHGIELGEPE--------------- 469 (723)
T ss_dssp -------------HHHHHHHHHHHHT--------------TCCSHHHHHHHHHHHHTTCCCCSCC---------------
T ss_pred -------------HHHHHHHHHHHHC--------------CCCCCHHHHHHHHHHHCCCCCCCCC---------------
T ss_conf -------------8999999999850--------------4999542899999985499857864---------------
Q ss_pred CCCEEEEEEEEECCCCCCCEEEEEEECCCCCEEEEEECCCHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEC
Q ss_conf 31168899565325688731489998699929999815605778986003501199999999999853883889999923
Q 002668 582 KVNRVYELLHVLEFTSSRKRMSVMVRNPENQLLLLCKGADSVMFERLSKHGQQFEAETRRHINRYAEAGLRTLVIAYREL 661 (894)
Q Consensus 582 ~~~~~~~il~~~~F~s~rkrmsviv~~~~~~~~l~~KGa~~~I~~~~~~~~~~~~~~~~~~l~~~~~~Glr~l~~A~k~l 661 (894)
.++ +...+ ++.. ..+.+|+++.+.+... ..++.+...+++++.+|+|++++|+
T Consensus 470 ----~~~--------~~~g~-g~~~-------~~~~~g~~~~~~~~~~----~~~~~~~~~~~~~~~~g~~~~~va~--- 522 (723)
T 3j09_A 470 ----KVE--------VIAGE-GVVA-------DGILVGNKRLMEDFGV----AVSNEVELALEKLEREAKTAVIVAR--- 522 (723)
T ss_dssp ----CCE--------EETTT-EEEE-------TTEEEECHHHHHHTTC----CCCHHHHHHHHHHHTTTCEEEEEEE---
T ss_pred ----CEE--------EECCC-CEEE-------EEEEECCHHHHHHCCC----CCCHHHHHHHHHHHHCCCEEEEEEE---
T ss_conf ----459--------96698-1699-------9999778999975499----8608999999999855982899978---
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCHHHHHHHHHHCCCEEEEECCCCHHHHH
Q ss_conf 99899999999999853100049999999999840284799987532335789399999999759869999299765699
Q 002668 662 GEDEYRIWEKEFLKAKTSVTSDREALVASAAEKIERDLILLGATAVEDKLQKGVPECIDKLAQAGIKVWVLTGDKMETAI 741 (894)
Q Consensus 662 ~~~e~~~~~~~~~~a~~~~~~~r~~~~~~~~~~iE~~l~llG~~~ieD~lr~~v~~~I~~Lk~aGIkv~ilTGD~~~ta~ 741 (894)
|++++|+++++|++|++++++|+.|+++||++||+|||+..+|.
T Consensus 523 ------------------------------------~~~~~G~i~i~D~~~~~~~~~i~~l~~~Gi~v~~~TGd~~~~a~ 566 (723)
T 3j09_A 523 ------------------------------------NGRVEGIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAE 566 (723)
T ss_dssp ------------------------------------TTEEEEEEEEECCSCTTHHHHHHHHHHTTCEEEEECSSCHHHHH
T ss_pred ------------------------------------CCEEEEEEEECCCCCHHHHHHHHHHHHCCCEEEEECCCCHHHHH
T ss_conf ------------------------------------99999999606875256999999999779979999998989999
Q ss_pred HHHHHCCCCCCCCEEEEEECCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCHHHHHHH
Q ss_conf 99998277556842899828992256753102135676876898999998633101334567650899990602478711
Q 002668 742 NIGYACSLLRQEMKQIVITLDSPDMEALEKQGDKENITKVSLESVTKQIREGISQVNSAKESKVTFGLVIDGKSLDFALD 821 (894)
Q Consensus 742 ~ia~~~gl~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvi~G~~l~~~l~ 821 (894)
.+|+++|+.
T Consensus 567 ~ia~~lgi~----------------------------------------------------------------------- 575 (723)
T 3j09_A 567 AISRELNLD----------------------------------------------------------------------- 575 (723)
T ss_dssp HHHHHHTCS-----------------------------------------------------------------------
T ss_pred HHHHHCCCC-----------------------------------------------------------------------
T ss_conf 999985993-----------------------------------------------------------------------
Q ss_pred HHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHCCCCEEEEECCCHHHHHHHHHCCCEEEECCCCCCCCC
Q ss_conf 899999999861169219994076158999786404997899993894319998828910992282200124
Q 002668 822 KKLEKMFLDLAIDCASVICCRSSPKQKALVTRLVKGTGKTTLAIGDGANDVGMLQEADIGVGISGVEGMQVN 893 (894)
Q Consensus 822 ~~~~~~~~~l~~~~~~~v~~r~sP~qK~~iv~~l~~~g~~vl~iGDG~ND~~ml~~A~vGI~i~g~eg~qaa 893 (894)
.++++++|+||..+++.++.. +.|+|+|||.||++||+.||+||+|+ .|++++
T Consensus 576 ----------------~~~~~~~P~~K~~~v~~l~~~-~~v~~vGDg~ND~~al~~A~vgiamg--~g~~~a 628 (723)
T 3j09_A 576 ----------------LVIAEVLPHQKSEEVKKLQAK-EVVAFVGDGINDAPALAQADLGIAVG--SGSDVA 628 (723)
T ss_dssp ----------------EEECSCCTTCHHHHHHHHTTT-CCEEEEECSSTTHHHHHHSSEEEECC--CCSCCS
T ss_pred ----------------EEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHCCEEEEEC--CCCHHH
T ss_conf ----------------899268999999999998349-93999989823099995499879967--875999
No 8
>3j08_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus}
Probab=1.00 E-value=1 Score=547.70 Aligned_cols=441 Identities=20% Similarity=0.269 Sum_probs=350.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH------HHHHHCCEEEEECCCCEEEEEECCCCCCCCEEEECCCCCCCCCEEEEEEECCCC
Q ss_conf 99999974999999998544------899863405999158809998222355583999606974697189983426896
Q 002668 112 VVIGATMAKEGVEDWRRRKQ------DIEANNRKVKVYGQDHTFVETKWKNLRVGDLVKVHKDEYFPADLLLLSSIYEDG 185 (894)
Q Consensus 112 ~vi~~s~i~~~~~d~~r~k~------~~~~n~~~~~V~r~~g~~~~i~~~~L~vGDII~i~~ge~iPaD~ilL~ss~~~G 185 (894)
+++++..+.+++|++.++++ ...+.+.+++|+| ||++++|++++|+|||||.|++||.||||++|++ |
T Consensus 101 ~i~~~~~ig~~le~~~~~~~~~~l~~l~~l~~~~a~v~r-~g~~~~i~~~~l~~GDiv~v~~Ge~IPaDg~vl~-----G 174 (645)
T 3j08_A 101 LLLAFLLLGRTLEARAKSRTGEAIKKLVGLQAKTAVVIR-DGKEIAVPVEEVAVGDIVIVRPGEKIPVDGVVVE-----G 174 (645)
T ss_dssp HHHHHHHHHHHHHHHHHCCCCCCCHHHHHTSCSEEEEEE-TTEEEEEEGGGCCTTCEEEECTTCBCCSEEEEEE-----C
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE-CCEEEEEEHHHCCCCCEEEECCCCEEEEEEEEEE-----C
T ss_conf 999999999999999999999999998617999799999-9979998899979899999889998866899998-----8
Q ss_pred EEEEECCCCCCCCCCEECCCCHHHCCCCCHHHHCCCEEEEEEECCCCCCCEEEEEEEECCEEEECCCCCEEECCEEEEEC
Q ss_conf 39998158877765300021001013788444413426999616988851269999987956306976503126087306
Q 002668 186 ICYVETMNLDGETNLKLKRSLEATNHLRDEESFQKFTAVIKCEDPNERLYSFVGTLQYEGKQYPLSPQQILLRDSKLKNT 265 (894)
Q Consensus 186 ~~~Vdts~LtGEs~~~~K~~~~~~~~~~~~~~~~~~~~~i~~e~p~~~~~~f~Gt~~~~g~~~~l~~~nii~rgs~l~nt 265 (894)
.++||||+|||||.|+.|.+++.. |+||.+.+|
T Consensus 175 ~~~VdeS~LTGES~Pv~K~~g~~v---------------------------~~Gt~~~~g-------------------- 207 (645)
T 3j08_A 175 ESYVDESMISGEPVPVLKSKGDEV---------------------------FGATINNTG-------------------- 207 (645)
T ss_dssp CEEEECHHHHCCSSCEEECTTCEE---------------------------CTTCEECSS--------------------
T ss_pred CEEEECCCCCCCCCCEECCCCCEE---------------------------ECCEEEECC--------------------
T ss_conf 689980224699876560899974---------------------------166798257--------------------
Q ss_pred CEEEEEEEEECCCC---HHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 81999999933620---022026999986429999997999999999999999999977654032368974211123789
Q 002668 266 DYVYGVVVFTGHDT---KVMQNATDPPSKRSKIERKMDKIVYLLFSTLILISSTGSVFFGIETKRDIDGGKIRRWYLQPD 342 (894)
Q Consensus 266 ~~~~gvVi~tG~~T---k~~~~~~~~~~k~s~~~~~~~~~~~~l~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~wy~~~~ 342 (894)
++.++|++||.+| ++.+....++.+++++++.++++..+++++.++++++.++.+.++... +|.
T Consensus 208 -~~~~~v~~~G~~T~l~~i~~lv~~a~~~k~~~~~~~d~~~~~~~~~vl~~a~~~~~~~~~~~~~--------~~~---- 274 (645)
T 3j08_A 208 -VLKIRATRVGGETLLAQIVKLVEDAMGSKPPIQRLADKVVAYFIPTVLLVAISAFIYWYFIAHA--------PLL---- 274 (645)
T ss_dssp -CEEEEEEECGGGSHHHHHHHHHSCCCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCCSC--------SCC----
T ss_pred -CEEEEEEECCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--------CHH----
T ss_conf -2999999727745999999999973146985899999999999999999999999999995698--------699----
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCCCCEEE
Q ss_conf 98754689994367899999999986102321436789999999998751253322346999807723742001334039
Q 002668 343 DATVFYDPRRAPLAAFLHFLTGLMLYGYLIPISLYISIEIVKVLQSVFINHDRDMYYEDTDKPARARTSNLNEELGQVDT 422 (894)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~i~ll~~~iP~sL~v~l~~~~~~~~~~l~~d~~m~~~~~~~~i~~~~~~~~e~Lg~v~~ 422 (894)
..+..++.+++..|||+|+++++++...++.++ +++++++|+++.+|.||++++
T Consensus 275 ----------------~~~~~~i~vlvia~P~aL~la~p~a~~~~~~~~----------a~~gilvk~~~~lE~lg~v~~ 328 (645)
T 3j08_A 275 ----------------FAFTTLIAVLVVACPCAFGLATPTALTVGMGKG----------AELGILIKNADALEVAEKVTA 328 (645)
T ss_dssp ----------------CTTTTTHHHHHHHSCTTHHHHHHHHHHHHHHHH----------HTTCCCCSSTTHHHHGGGCCE
T ss_pred ----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHCCEEECCCHHHHHHHCCCE
T ss_conf ----------------999999999998736689999999999999999----------977937668169998627999
Q ss_pred EEECCCCCCEEEEEEEEEEEECCEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 99749873011002999999848303677128989999750887655688888899988764347876678555614331
Q 002668 423 ILSDKTGTLTCNSMEFVKCSVAGVAYGRVMTEVERTLAKRKGERTFEVDDSQTDAPGLNGNIVESGKSVKGFNFRDERIM 502 (894)
Q Consensus 423 I~~DKTGTLT~n~m~~~~~~i~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~ 502 (894)
||||||||||+|+|.+.+++..+..
T Consensus 329 i~fDKTGTLT~~~~~v~~~~~~~~~------------------------------------------------------- 353 (645)
T 3j08_A 329 VIFDKTGTLTKGKPEVTDLVPLNGD------------------------------------------------------- 353 (645)
T ss_dssp EEEEGGGTSSSSCCEEEEEEESSSC-------------------------------------------------------
T ss_pred EEECCCCCCCCCCEEEEEEEECCCC-------------------------------------------------------
T ss_conf 9986866655897079999817999-------------------------------------------------------
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHCCCEEEEECCCEEEEEECCCCCCCC
Q ss_conf 35678998706899999999674241036789999447730694099999999983969971248826999448877653
Q 002668 503 NGQWVNEPHSDVIQKFFRVLAICHTAIPDVNEETGEISYEAESPDEAAFVIAAREVGFQFFGSSQTSISLHELDPVSGQK 582 (894)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~lalC~~~~~~~~~~~~~~~~~~~sp~e~al~~~a~~~g~~~~~~~~~~~~i~~~~~~~~~~ 582 (894)
..+++...+.|.. .++||++.|+++++.+.|+.+....
T Consensus 354 ------------~~~~l~~aa~~e~--------------~s~hPla~Aiv~~a~~~g~~~~~~~---------------- 391 (645)
T 3j08_A 354 ------------ERELLRLAAIAER--------------RSEHPIAEAIVKKALEHGIELGEPE---------------- 391 (645)
T ss_dssp ------------HHHHHHHHHHHHT--------------TCCSHHHHHHHHHHHHTTCCCCSCC----------------
T ss_pred ------------HHHHHHHHHHHHH--------------CCCCHHHHHHHHHHHHCCCCCCCCC----------------
T ss_conf ------------7999999999751--------------5887467999999996599867865----------------
Q ss_pred CCEEEEEEEEECCCCCCCEEEEEEECCCCCEEEEEECCCHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEECC
Q ss_conf 11688995653256887314899986999299998156057789860035011999999999998538838899999239
Q 002668 583 VNRVYELLHVLEFTSSRKRMSVMVRNPENQLLLLCKGADSVMFERLSKHGQQFEAETRRHINRYAEAGLRTLVIAYRELG 662 (894)
Q Consensus 583 ~~~~~~il~~~~F~s~rkrmsviv~~~~~~~~l~~KGa~~~I~~~~~~~~~~~~~~~~~~l~~~~~~Glr~l~~A~k~l~ 662 (894)
.++ +...+ ++.. ..+.+|+++.+.+.. ...++.+...+++++.+|+|++++|+
T Consensus 392 ---~~~--------~~~g~-g~~~-------~~v~~g~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~l~va~---- 444 (645)
T 3j08_A 392 ---KVE--------VIAGE-GVVA-------DGILVGNKRLMEDFG----VAVSNEVELALEKLEREAKTAVIVAR---- 444 (645)
T ss_dssp ---CCE--------EETTT-EEEE-------TTEEEECHHHHHHTT----CCCCHHHHHHHHHHHTTTCCCEEEEE----
T ss_pred ---CEE--------EECCC-CEEE-------EEEEECCHHHHHHCC----CCCCHHHHHHHHHHHHCCCEEEEEEE----
T ss_conf ---359--------96588-4699-------999988799997549----87518899999999855983899988----
Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCHHHHHHHHHHCCCEEEEECCCCHHHHHH
Q ss_conf 98999999999998531000499999999998402847999875323357893999999997598699992997656999
Q 002668 663 EDEYRIWEKEFLKAKTSVTSDREALVASAAEKIERDLILLGATAVEDKLQKGVPECIDKLAQAGIKVWVLTGDKMETAIN 742 (894)
Q Consensus 663 ~~e~~~~~~~~~~a~~~~~~~r~~~~~~~~~~iE~~l~llG~~~ieD~lr~~v~~~I~~Lk~aGIkv~ilTGD~~~ta~~ 742 (894)
|++++|+++++|++|++++++|+.|+++||++||+|||+..+|..
T Consensus 445 -----------------------------------~~~~~G~i~~~D~l~~~~~~~i~~L~~~Gi~v~~~TGd~~~~a~~ 489 (645)
T 3j08_A 445 -----------------------------------NGRVEGIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEA 489 (645)
T ss_dssp -----------------------------------TTEEEEEEEEECCCTTTHHHHHHHHHHTTCEEEEECSSCHHHHHH
T ss_pred -----------------------------------CCEEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEEECCCHHHHHH
T ss_conf -----------------------------------999999999348765679999999997799799990888799999
Q ss_pred HHHHCCCCCCCCEEEEEECCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCHHHHHHHH
Q ss_conf 99982775568428998289922567531021356768768989999986331013345676508999906024787118
Q 002668 743 IGYACSLLRQEMKQIVITLDSPDMEALEKQGDKENITKVSLESVTKQIREGISQVNSAKESKVTFGLVIDGKSLDFALDK 822 (894)
Q Consensus 743 ia~~~gl~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvi~G~~l~~~l~~ 822 (894)
+|+++|+.
T Consensus 490 ia~~lgi~------------------------------------------------------------------------ 497 (645)
T 3j08_A 490 ISRELNLD------------------------------------------------------------------------ 497 (645)
T ss_dssp HHHHHTCS------------------------------------------------------------------------
T ss_pred HHHHCCCC------------------------------------------------------------------------
T ss_conf 99983997------------------------------------------------------------------------
Q ss_pred HHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHCCCCEEEEECCCHHHHHHHHHCCCEEEECCCCCCCCC
Q ss_conf 99999999861169219994076158999786404997899993894319998828910992282200124
Q 002668 823 KLEKMFLDLAIDCASVICCRSSPKQKALVTRLVKGTGKTTLAIGDGANDVGMLQEADIGVGISGVEGMQVN 893 (894)
Q Consensus 823 ~~~~~~~~l~~~~~~~v~~r~sP~qK~~iv~~l~~~g~~vl~iGDG~ND~~ml~~A~vGI~i~g~eg~qaa 893 (894)
.++++++|++|..+++.++.. +.|+|+|||.||++|++.||+||+|++ |++++
T Consensus 498 ---------------~~~~~~~P~~K~~~v~~l~~~-~~v~~vGDg~ND~~al~~A~vgiamg~--g~~~a 550 (645)
T 3j08_A 498 ---------------LVIAEVLPHQKSEEVKKLQAK-EVVAFVGDGINDAPALAQADLGIAVGS--GSDVA 550 (645)
T ss_dssp ---------------EEECSCCTTCHHHHHHHHTTT-CCEEEEECSSSCHHHHHHSSEEEEECC--CSCCS
T ss_pred ---------------EEEEECCHHHHHHHHHHHHHC-CEEEEEECCHHHHHHHHHCCEEEEECC--CCHHH
T ss_conf ---------------899837877689999998609-959999697768999975998899488--75999
No 9
>2yj3_A Copper-transporting ATPase; hydrolase, P-type ATPase, COPB, heavy metal translocation; 2.20A {Sulfolobus solfataricus} PDB: 2iye_A 2yj6_A* 2yj5_A* 2yj4_A*
Probab=1.00 E-value=1 Score=187.26 Aligned_cols=103 Identities=24% Similarity=0.416 Sum_probs=88.9
Q ss_pred CCCEEEEEEEECCCCCCCHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHCCHH
Q ss_conf 28479998753233578939999999975986999929976569999998277556842899828992256753102135
Q 002668 697 RDLILLGATAVEDKLQKGVPECIDKLAQAGIKVWVLTGDKMETAINIGYACSLLRQEMKQIVITLDSPDMEALEKQGDKE 776 (894)
Q Consensus 697 ~~l~llG~~~ieD~lr~~v~~~I~~Lk~aGIkv~ilTGD~~~ta~~ia~~~gl~~~~~~~~~i~~~~~~~~~~~~~~~~~ 776 (894)
.+-.+.|.+.+.|+++|++.++|+.|++.|++++|+|||+..++..++..+|+..
T Consensus 123 ~~~~~~~~~~~~~~~~~g~~~~l~~L~~~g~~~~i~T~~~~~~~~~~~~~~gl~~------------------------- 177 (263)
T 2yj3_A 123 INGEPIASFNISDVPRPNLKDYLEKLKNEGLKIIILSGDKEDKVKELSKELNIQE------------------------- 177 (263)
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHH
Q ss_conf 67687689899999863310133456765089999060247871189999999986116921999407615899978640
Q 002668 777 NITKVSLESVTKQIREGISQVNSAKESKVTFGLVIDGKSLDFALDKKLEKMFLDLAIDCASVICCRSSPKQKALVTRLVK 856 (894)
Q Consensus 777 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvi~G~~l~~~l~~~~~~~~~~l~~~~~~~v~~r~sP~qK~~iv~~l~ 856 (894)
+|+.+.|..|..+++.++
T Consensus 178 --------------------------------------------------------------~f~~~~p~~k~~~~~~l~ 195 (263)
T 2yj3_A 178 --------------------------------------------------------------YYSNLSPEDKVRIIEKLK 195 (263)
Q ss_pred CCCCEEEEECCCHHHHHHHHHCCCEEEECC
Q ss_conf 499789999389431999882891099228
Q 002668 857 GTGKTTLAIGDGANDVGMLQEADIGVGISG 886 (894)
Q Consensus 857 ~~g~~vl~iGDG~ND~~ml~~A~vGI~i~g 886 (894)
..+..++|||||.||++|++.|++||+++.
T Consensus 196 ~~~~~~~~VGD~~~D~~aa~~Agv~va~g~ 225 (263)
T 2yj3_A 196 QNGNKVLMIGDGVNDAAALALADVSVAMGN 225 (263)
No 10
>3a1c_A Probable copper-exporting P-type ATPase A; ATP-binding, cell membrane, copper transport, hydrolase, ION transport, magnesium, membrane; HET: ACP; 1.85A {Archaeoglobus fulgidus} PDB: 3a1d_A* 3a1e_A* 2b8e_A 2voy_J 2voy_I
Probab=1.00 E-value=1 Score=159.21 Aligned_cols=238 Identities=23% Similarity=0.294 Sum_probs=172.2
Q ss_pred CCCCEEEECCCCCCCCCCEEEEEECCCCCCEEEEEEEEEEEECCEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 99980772374200133403999749873011002999999848303677128989999750887655688888899988
Q 002668 402 TDKPARARTSNLNEELGQVDTILSDKTGTLTCNSMEFVKCSVAGVAYGRVMTEVERTLAKRKGERTFEVDDSQTDAPGLN 481 (894)
Q Consensus 402 ~~~~i~~~~~~~~e~Lg~v~~I~~DKTGTLT~n~m~~~~~~i~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (894)
.++++++|+++.+|.+++++.|+||||||||.+.+.+..++..+. .+
T Consensus 14 ~~~gilik~~~~le~l~~i~~viFD~dGTL~ds~~~~~~~~~~~~------~~--------------------------- 60 (287)
T 3a1c_A 14 AELGILIKNADALEVAEKVTAVIFDKTGTLTKGKPEVTDLVPLNG------DE--------------------------- 60 (287)
T ss_dssp CCCCEEECSTTHHHHHHHCCEEEEECCCCCBCSCCEEEEEEESSS------CH---------------------------
T ss_pred HHCCEEEECCHHHHHHHCCCEEEEECCCCCCCCCEEEEEEEECCC------CH---------------------------
T ss_conf 879979968089988536999999689988289779999981799------99---------------------------
Q ss_pred CCCCCCCCCCCCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHCCCE
Q ss_conf 76434787667855561433135678998706899999999674241036789999447730694099999999983969
Q 002668 482 GNIVESGKSVKGFNFRDERIMNGQWVNEPHSDVIQKFFRVLAICHTAIPDVNEETGEISYEAESPDEAAFVIAAREVGFQ 561 (894)
Q Consensus 482 ~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~lalC~~~~~~~~~~~~~~~~~~~sp~e~al~~~a~~~g~~ 561 (894)
.+++. +|..+. ..+.+|.+.|+.++++..|+.
T Consensus 61 ----------------------------------~~~l~---~~~~~e-----------~~s~hp~~~a~~~~~~~~g~~ 92 (287)
T 3a1c_A 61 ----------------------------------RELLR---LAAIAE-----------RRSEHPIAEAIVKKALEHGIE 92 (287)
T ss_dssp ----------------------------------HHHHH---HHHHHT-----------TTCCSHHHHHHHHHHHHTTCC
T ss_pred ----------------------------------HHHHH---HHHHHH-----------HCCCCHHHHHHHHHHHHCCCC
T ss_conf ----------------------------------99999---999975-----------217997999999999865998
Q ss_pred EEEECCCEEEEEECCCCCCCCCCEEEEEEEEECCCCCCCEEEEEEECCCCCEEEEEECCCHHHHHHHCCCCHHHHHHHHH
Q ss_conf 97124882699944887765311688995653256887314899986999299998156057789860035011999999
Q 002668 562 FFGSSQTSISLHELDPVSGQKVNRVYELLHVLEFTSSRKRMSVMVRNPENQLLLLCKGADSVMFERLSKHGQQFEAETRR 641 (894)
Q Consensus 562 ~~~~~~~~~~i~~~~~~~~~~~~~~~~il~~~~F~s~rkrmsviv~~~~~~~~l~~KGa~~~I~~~~~~~~~~~~~~~~~ 641 (894)
.... ..+..+. .+++.. . .+.+|+++.+.+... ..+..+..
T Consensus 93 ~~~~-------------------~~~~~~~---------G~~~~~----~---~~~~g~~~~~~~~~~----~~~~~~~~ 133 (287)
T 3a1c_A 93 LGEP-------------------EKVEVIA---------GEGVVA----D---GILVGNKRLMEDFGV----AVSNEVEL 133 (287)
T ss_dssp CCCC-------------------SCEEEET---------TTEEEE----T---TEEEECHHHHHHTTC----CCCHHHHH
T ss_pred CCCC-------------------CCCEEEC---------CCCEEE----E---EEEECCHHHHHHCCC----CCCHHHHH
T ss_conf 5555-------------------4414624---------887288----9---999889999986599----75077899
Q ss_pred HHHHHHHCCCEEEEEEEEECCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCHHHHHHH
Q ss_conf 99999853883889999923998999999999998531000499999999998402847999875323357893999999
Q 002668 642 HINRYAEAGLRTLVIAYRELGEDEYRIWEKEFLKAKTSVTSDREALVASAAEKIERDLILLGATAVEDKLQKGVPECIDK 721 (894)
Q Consensus 642 ~l~~~~~~Glr~l~~A~k~l~~~e~~~~~~~~~~a~~~~~~~r~~~~~~~~~~iE~~l~llG~~~ieD~lr~~v~~~I~~ 721 (894)
..+.+...|.+++++++ +..+++.+...++++|++.++++.
T Consensus 134 ~~~~~~~~g~~~i~~~~---------------------------------------d~~~~~~~~~~~~~~~g~~~~l~~ 174 (287)
T 3a1c_A 134 ALEKLEREAKTAVIVAR---------------------------------------NGRVEGIIAVSDTLKESAKPAVQE 174 (287)
T ss_dssp HHHHHHHTTCEEEEEEE---------------------------------------TTEEEEEEEEECCBCTTHHHHHHH
T ss_pred HHHHHHHCCCEEEEEEE---------------------------------------CCEEEEEEEECCCCCHHHHHHHHH
T ss_conf 99998747975999999---------------------------------------998999999545361418999999
Q ss_pred HHHCCCEEEEECCCCHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 99759869999299765699999982775568428998289922567531021356768768989999986331013345
Q 002668 722 LAQAGIKVWVLTGDKMETAINIGYACSLLRQEMKQIVITLDSPDMEALEKQGDKENITKVSLESVTKQIREGISQVNSAK 801 (894)
Q Consensus 722 Lk~aGIkv~ilTGD~~~ta~~ia~~~gl~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 (894)
|+++|+++.++||++...+..+...+|+..
T Consensus 175 L~~~g~~~~i~T~~~~~~~~~~l~~~gl~~-------------------------------------------------- 204 (287)
T 3a1c_A 175 LKRMGIKVGMITGDNWRSAEAISRELNLDL-------------------------------------------------- 204 (287)
T ss_dssp HHHTTCEEEEECSSCHHHHHHHHHHHTCSE--------------------------------------------------
T ss_pred HHHCCCEEEEEECCCHHHHHHHHHHHCCCE--------------------------------------------------
T ss_conf 997798599990989899999999809813--------------------------------------------------
Q ss_pred CCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHCCCCEEEEECCCHHHHHHHHHCCCE
Q ss_conf 67650899990602478711899999999861169219994076158999786404997899993894319998828910
Q 002668 802 ESKVTFGLVIDGKSLDFALDKKLEKMFLDLAIDCASVICCRSSPKQKALVTRLVKGTGKTTLAIGDGANDVGMLQEADIG 881 (894)
Q Consensus 802 ~~~~~~~lvi~G~~l~~~l~~~~~~~~~~l~~~~~~~v~~r~sP~qK~~iv~~l~~~g~~vl~iGDG~ND~~ml~~A~vG 881 (894)
+|..+.|..|...++.+... ..+++|||+.||+.|.+.|+++
T Consensus 205 -------------------------------------~f~~i~~~~K~~~~~~l~~~-~~~~~vGDs~~Di~~a~~ag~~ 246 (287)
T 3a1c_A 205 -------------------------------------VIAEVLPHQKSEEVKKLQAK-EVVAFVGDGINDAPALAQADLG 246 (287)
T ss_dssp -------------------------------------EECSCCTTCHHHHHHHHTTT-CCEEEEECTTTCHHHHHHSSEE
T ss_pred -------------------------------------EEEECCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHCCEE
T ss_conf -------------------------------------11005817799999998258-8399997977789999978952
Q ss_pred EEECC
Q ss_conf 99228
Q 002668 882 VGISG 886 (894)
Q Consensus 882 I~i~g 886 (894)
|+++.
T Consensus 247 v~~~~ 251 (287)
T 3a1c_A 247 IAVGS 251 (287)
T ss_dssp EEECC
T ss_pred EEECC
T ss_conf 99678
Done!