Query 002669
Match_columns 894
No_of_seqs 522 out of 2732
Neff 10.2
Searched_HMMs 29240
Date Tue Mar 26 18:43:37 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002669.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1384-1388//hhsearch_pdb/002669hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1i84_S Smooth muscle myosin he 1.0 1 1 115.5 7.2 97 727-823 1073-1169(1184)
2 2c2l_A CHIP, carboxy terminus 1.0 1 1 111.1 2.6 58 836-893 205-262 (281)
3 4ayc_A E3 ubiquitin-protein li 1.0 1 1 109.6 8.7 49 839-888 53-101 (138)
4 1i84_S Smooth muscle myosin he 1.0 1 1 106.4 8.7 22 165-186 420-441 (1184)
5 3fl2_A E3 ubiquitin-protein li 1.0 1 1 106.2 4.0 60 834-893 47-107 (124)
6 1z6u_A NP95-like ring finger p 1.0 1 1 104.6 3.1 58 836-893 75-133 (150)
7 2f42_A STIP1 homology and U-bo 1.0 1 1 103.9 8.6 60 834-893 101-160 (179)
8 2y1n_A E3 ubiquitin-protein li 1.0 1 1 103.5 4.1 59 834-892 327-385 (389)
9 3lrq_A E3 ubiquitin-protein li 1.0 1 1 101.9 2.5 62 833-894 16-78 (100)
10 2ckl_B Ubiquitin ligase protei 1.0 1 1 100.0 1.6 55 834-888 49-104 (165)
No 1
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=1.00 E-value=1 Score=115.52 Aligned_cols=97 Identities=12% Similarity=0.180 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999898887899999699889999999999999999989999999999999999999999999999999999
Q 002669 727 EEQMKACLTEALRYNSEDRHLAVNLETTKWELADAEKELKWLKSAVTSSDKEYEQIQRKTEDMRKELENERNERKKLEEE 806 (894)
Q Consensus 727 e~~l~~l~~~~~~l~~e~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~el~~~~~~l~e~~~~l~~~~~~~~~l~~~ 806 (894)
+..+..+..++..+...+..+..++..+...+..+...+..+...+..++.++..+..++.+..............+..+
T Consensus 1073 ~~el~el~~el~~le~~l~~le~el~~l~~~le~l~~~~~~le~~l~~Le~eie~L~eeLee~~~~~~~le~q~~~L~~e 1152 (1184)
T 1i84_S 1073 HEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEE 1152 (1184)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999988987899999999999999999999988899999999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q ss_conf 99997776532224226
Q 002669 807 LMEVNNKVAELTSETGE 823 (894)
Q Consensus 807 i~~l~~~i~~l~~~~~~ 823 (894)
+..++..++.++++|..
T Consensus 1153 le~L~~~Ieel~~vn~a 1169 (1184)
T 1i84_S 1153 LEALKTELEDTLDTTAT 1169 (1184)
T ss_dssp -----------------
T ss_pred HHHHHHHHHHHHHHHHH
T ss_conf 99999999987667999
No 2
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=1.00 E-value=1 Score=111.14 Aligned_cols=58 Identities=16% Similarity=0.044 Sum_probs=51.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 3465432323466689601358885557578686312888766768777889965556
Q 002669 836 CKAILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDVRFVK 893 (894)
Q Consensus 836 ~~~~l~C~iC~~~~~~~v~~~C~H~fC~~C~~~~~~~~~~~Cp~C~~~~~~~d~~~~~ 893 (894)
.-..+.||||++.|.+||+++|||+||..||..|+......||+|+.+|...++.|++
T Consensus 205 ~~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~~n~ 262 (281)
T 2c2l_A 205 IPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNL 262 (281)
T ss_dssp CCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECH
T ss_pred CCCCCCCCCCCCHHCCCEECCCCCEECHHHHHHHHHHCCCCCCCCCCCCCHHCCCCCH
T ss_conf 9966179273887138859999897779999999987879996978999521086169
No 3
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=1.00 E-value=1 Score=109.64 Aligned_cols=49 Identities=31% Similarity=0.668 Sum_probs=44.2
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 54323234666896013588855575786863128887667687778899
Q 002669 839 ILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSD 888 (894)
Q Consensus 839 ~l~C~iC~~~~~~~v~~~C~H~fC~~C~~~~~~~~~~~Cp~C~~~~~~~d 888 (894)
.+.|+||++.|.+||+++|||+||..|+..|+. +...||+||.+|...+
T Consensus 53 ~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~~~~ 101 (138)
T 4ayc_A 53 ELQCIICSEYFIEAVTLNCAHSFCSYCINEWMK-RKIECPICRKDIKSKT 101 (138)
T ss_dssp HSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTT-TCSBCTTTCCBCCCEE
T ss_pred CCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHH-CCCCCCCCCCCCCCCC
T ss_conf 599756272327966788999846999999997-6996999998278899
No 4
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=1.00 E-value=1 Score=106.42 Aligned_cols=22 Identities=18% Similarity=0.045 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999753999999999999999
Q 002669 165 EEALASRHSSARELMKFIEEVI 186 (894)
Q Consensus 165 e~~L~~r~~~~~~~~~~l~~~~ 186 (894)
+.....|....+.+-++++.-+
T Consensus 420 ~~a~~~rdalak~lY~~lF~wl 441 (1184)
T 1i84_S 420 EQADFAIEALAKAKFERLFRWI 441 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999999
No 5
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=1.00 E-value=1 Score=106.23 Aligned_cols=60 Identities=20% Similarity=0.548 Sum_probs=51.0
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCC-CCCCCCC
Q ss_conf 42346543232346668960135888555757868631288876676877788-9965556
Q 002669 834 KDCKAILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQ-SDVRFVK 893 (894)
Q Consensus 834 ~~~~~~l~C~iC~~~~~~~v~~~C~H~fC~~C~~~~~~~~~~~Cp~C~~~~~~-~d~~~~~ 893 (894)
..+...+.|+||++.|.+||+++|||+||..|+..|+......||.||..|.. .++.+++
T Consensus 47 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~n~ 107 (124)
T 3fl2_A 47 SKVEETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQ 107 (124)
T ss_dssp HHHHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCCCH
T ss_pred HHCCCCCCCCCCCHHHCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCH
T ss_conf 8275389998689577694772287914499999999678098999986589988778789
No 6
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=1.00 E-value=1 Score=104.61 Aligned_cols=58 Identities=28% Similarity=0.606 Sum_probs=49.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCC-CCCCCC
Q ss_conf 3465432323466689601358885557578686312888766768777889-965556
Q 002669 836 CKAILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQS-DVRFVK 893 (894)
Q Consensus 836 ~~~~l~C~iC~~~~~~~v~~~C~H~fC~~C~~~~~~~~~~~Cp~C~~~~~~~-d~~~~~ 893 (894)
+...+.|+||++.|.+||+++|||+||..||..|+......||+||..|... ++.+++
T Consensus 75 l~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~n~ 133 (150)
T 1z6u_A 75 LEQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNE 133 (150)
T ss_dssp HHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCBCH
T ss_pred CCCCCEEECCCHHHCCCEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCH
T ss_conf 74279900579042598882899903199999999839895999883578877788798
No 7
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=1.00 E-value=1 Score=103.95 Aligned_cols=60 Identities=15% Similarity=0.066 Sum_probs=53.1
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 423465432323466689601358885557578686312888766768777889965556
Q 002669 834 KDCKAILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDVRFVK 893 (894)
Q Consensus 834 ~~~~~~l~C~iC~~~~~~~v~~~C~H~fC~~C~~~~~~~~~~~Cp~C~~~~~~~d~~~~~ 893 (894)
..+...+.||||+..|.+||+++|||+||..||..|+......||+||.+|...++.|++
T Consensus 101 ~~ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~pN~ 160 (179)
T 2f42_A 101 REIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNL 160 (179)
T ss_dssp CCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECH
T ss_pred CCCCHHHCCCCCCCCCCCCEECCCCCEECHHHHHHHHHHCCCCCCCCCCCCCHHHCCCHH
T ss_conf 589276164470341789848899897878999999996889897984999856281359
No 8
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=1.00 E-value=1 Score=103.46 Aligned_cols=59 Identities=25% Similarity=0.548 Sum_probs=49.9
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 42346543232346668960135888555757868631288876676877788996555
Q 002669 834 KDCKAILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDVRFV 892 (894)
Q Consensus 834 ~~~~~~l~C~iC~~~~~~~v~~~C~H~fC~~C~~~~~~~~~~~Cp~C~~~~~~~d~~~~ 892 (894)
.+......|+||.+.+.+++++||||+||..|+..|+..+...||+||..+....+..+
T Consensus 327 e~~~~~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~~~i~v 385 (389)
T 2y1n_A 327 EMGSTFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEPIVV 385 (389)
T ss_dssp HTTTSSSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEEEECSC
T ss_pred HHCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEC
T ss_conf 64678998971576888838747998331799999996599989999882677605754
No 9
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=1.00 E-value=1 Score=101.88 Aligned_cols=62 Identities=19% Similarity=0.624 Sum_probs=52.9
Q ss_pred HHCCCCCCCCCCCCCCCCCCCC-CCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 7423465432323466689601-3588855575786863128887667687778899655569
Q 002669 833 IKDCKAILKCGVCFDRPKEVVI-TKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDVRFVKI 894 (894)
Q Consensus 833 ~~~~~~~l~C~iC~~~~~~~v~-~~C~H~fC~~C~~~~~~~~~~~Cp~C~~~~~~~d~~~~~~ 894 (894)
...+...+.|+||++.|.+|++ ++|||+||..||..|+......||.||.+|...++.++++
T Consensus 16 ~~~l~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~~~~~ 78 (100)
T 3lrq_A 16 VESIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRW 78 (100)
T ss_dssp HHHHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECTT
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 345887889962892300866658999842299999999778498988888489999576388
No 10
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=1.00 E-value=1 Score=100.05 Aligned_cols=55 Identities=29% Similarity=0.732 Sum_probs=46.9
Q ss_pred HCCCCCCCCCCCCCCCCCCCCC-CCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 4234654323234666896013-588855575786863128887667687778899
Q 002669 834 KDCKAILKCGVCFDRPKEVVIT-KCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSD 888 (894)
Q Consensus 834 ~~~~~~l~C~iC~~~~~~~v~~-~C~H~fC~~C~~~~~~~~~~~Cp~C~~~~~~~d 888 (894)
..+...+.|+||++.|.+|+++ +|||+||..|+..|+..+...||.||..|...+
T Consensus 49 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 104 (165)
T 2ckl_B 49 RSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKR 104 (165)
T ss_dssp -CCHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSGG
T ss_pred HHCCCCCCCCCCCHHHHCCCEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf 20799999962692763938848998962899999999868297999998078856
Done!