Query 002672
Match_columns 894
No_of_seqs 305 out of 676
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 04:47:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002672.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002672hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02305 lipoxygenase 100.0 1E-262 3E-267 2264.6 72.2 819 66-894 82-918 (918)
2 PLN02264 lipoxygenase 100.0 1E-260 3E-265 2247.8 67.9 818 66-894 85-919 (919)
3 PLN02337 lipoxygenase 100.0 1E-256 2E-261 2223.2 68.8 819 54-894 20-866 (866)
4 PF00305 Lipoxygenase: Lipoxyg 100.0 1E-204 3E-209 1782.1 35.4 664 204-877 1-667 (667)
5 cd01751 PLAT_LH2 PLAT/ LH2 dom 100.0 9.9E-32 2.1E-36 261.4 13.1 123 68-195 3-137 (137)
6 smart00308 LH2 Lipoxygenase ho 99.2 8.8E-11 1.9E-15 109.1 10.7 79 98-183 20-104 (105)
7 cd00113 PLAT PLAT (Polycystin- 98.9 1.8E-08 4E-13 95.1 11.5 91 96-192 18-115 (116)
8 PF01477 PLAT: PLAT/LH2 domain 98.9 5.2E-09 1.1E-13 97.6 7.5 90 97-193 17-113 (113)
9 cd02899 PLAT_SR Scavenger rece 98.8 9.7E-09 2.1E-13 97.4 8.9 78 97-184 19-99 (109)
10 cd01753 PLAT_LOX PLAT domain o 98.6 2.9E-07 6.2E-12 87.8 9.4 82 98-185 20-106 (113)
11 cd01756 PLAT_repeat PLAT/LH2 d 98.5 8.9E-07 1.9E-11 85.0 11.0 90 97-192 19-117 (120)
12 cd01752 PLAT_polycystin PLAT/L 98.3 2.9E-06 6.3E-11 81.5 9.7 84 97-185 19-108 (120)
13 cd01754 PLAT_plant_stress PLAT 98.3 3.1E-06 6.7E-11 82.8 9.9 84 97-185 19-118 (129)
14 cd01757 PLAT_RAB6IP1 PLAT/LH2 98.2 8.9E-06 1.9E-10 78.0 10.3 75 97-185 20-99 (114)
15 cd01755 PLAT_lipase PLAT/ LH2 65.6 50 0.0011 32.0 9.6 75 98-179 20-105 (120)
16 KOG2080 Uncharacterized conser 37.0 16 0.00034 45.7 1.2 50 134-184 1015-1068(1295)
17 cd01758 PLAT_LPL PLAT/ LH2 dom 26.1 5.1E+02 0.011 26.0 9.6 76 98-179 21-119 (137)
18 KOG2675 Adenylate cyclase-asso 23.9 2.8E+02 0.0061 33.0 8.1 109 560-715 91-216 (480)
19 PF10474 DUF2451: Protein of u 23.6 44 0.00095 36.3 1.6 24 675-704 178-201 (234)
20 PF10281 Ish1: Putative stress 22.9 1.2E+02 0.0026 23.5 3.6 31 694-733 5-35 (38)
21 PF06232 ATS3: Embryo-specific 22.4 2.9E+02 0.0062 27.6 6.8 57 124-184 61-117 (125)
22 PF09545 RE_AccI: AccI restric 21.8 9.4E+02 0.02 27.5 11.2 43 669-711 51-94 (366)
23 PF12588 PSDC: Phophatidylseri 20.3 1.4E+02 0.003 30.3 4.3 127 690-837 10-139 (141)
No 1
>PLN02305 lipoxygenase
Probab=100.00 E-value=1.2e-262 Score=2264.58 Aligned_cols=819 Identities=49% Similarity=0.907 Sum_probs=778.7
Q ss_pred eeeeeEEEecCCCCCCCCC--CcccchhhhhcCCcEEEEEEeccCCCCC--------cccCccccccccccccceEEEEE
Q 002672 66 NGVTAVVTVRPPINPLTAG--GQVIDDVEDLFSKSLQLELVSAKDENKP--------TISGNAKIKGVVVKDCEVQYEAE 135 (894)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~--~~~~d~~~~~~g~~v~l~Lvs~~~~~~~--------~l~~~~~~~~~~~~~~~~~y~v~ 135 (894)
.+++++++|++++.+.++. ++++|+++|++|++|+|||||++.++++ .|++|.++. ...++++.|+|+
T Consensus 82 ~~i~~~v~~~~~~~~~~~~~~~~~~d~~~~~~g~~v~lqLvS~~~~~~~g~gk~~~~~l~~~~~~~--~~~~~~~~~~~~ 159 (918)
T PLN02305 82 IDVRAVITIRKKIKEKITEKFEDQWEYFMNGIGQGILIQLVSEEIDPVTGSGKSVESSVRGWLPKP--SNDPHIVEYAAD 159 (918)
T ss_pred CeEEEEEEEEeecccchhhcccchhhHHHHhhCCeEEEEEEeccccCCCCCcccccchhhccccCC--CCCCCceEEEEE
Confidence 5666666666666554444 5889999999999999999999988755 588998654 322566799999
Q ss_pred EeccCCCCceeEEEEEeCCCCceeeeeEEEeecCCCeEEEecCCCccCCC-CCCCeeeecCcccccCCCChhhHHHHHHH
Q 002672 136 FQVPVDFGEIGAILVVNEHALEMYLKDIVLDGLPSGLVTITCESWVQPNT-SKDPRIFFTNKSYLPSKTPNGLQKLRYAE 214 (894)
Q Consensus 136 f~~~~~~G~pgai~v~n~~~~e~~l~~i~l~~~p~g~~~F~c~sWv~~~~-~~~~r~ff~nk~yLP~~tp~~L~~~R~~E 214 (894)
|+|+++||+||||+|+|.|++||||++|+|+++|+|+|||+||||||+.+ ++.+||||+||+|||++||++|++|||+|
T Consensus 160 f~~~~~fG~pGA~~v~N~h~~ef~l~~i~l~~~p~g~v~f~cnSWv~~~~~~~~~RiFF~nk~ylP~~tP~~l~~~Re~e 239 (918)
T PLN02305 160 FTVPFDFGKPGAVLVTNLHGKEFYLMEIVIHGFDDGPIFFPANTWIHSRKDNPESRIIFRNQAYLPSQTPPGIKDLRRED 239 (918)
T ss_pred EeeccccCCcceEEEEeCCCceEEEEEEEEecCCCCeEEEeccCccccCCCCCCCceEecCCCcCcccCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred HHhhhcCCCcccccCCeeeeccccCCCCCCCCccccccccCCCCCCCCCCccCCCCCCCCCCCCccccCCCCCCCCCCCc
Q 002672 215 LVNLRGNGEGERQKADRIYDYDVYNDLGDPDEDEELKRPVLGGKQHPYPRRCRTGRPHCKTDEASEERVPSKSLIPISPY 294 (894)
Q Consensus 215 L~~lrg~g~g~r~~~driYdy~~yndlG~Pd~~~~~~rpvlgg~~~Pyprr~rtgr~~~~~dp~~e~r~~~~~~~~~~~y 294 (894)
|++|||||+||||+||||||||+|||||+||++++++||||||++|||||||||||+||++||.+|+|.... ..||
T Consensus 240 L~~lRGdg~Gerk~~dRiYdYd~YNDLG~Pd~~~~~~RpvLGG~~~PYPRR~RTGR~~t~~Dp~~Esr~~~~----~~~Y 315 (918)
T PLN02305 240 LLSLRGNGKGERKPHDRIYDYAPYNDLGNPDKDEDLARPVLGGEEWPYPRRCRTGRPPTKKDPLCESRIEKP----HPVY 315 (918)
T ss_pred HHHhcCCCCCcCCccccccchhhhccCCCCCCCccccCcccCCCCCCCCCcCcCCCCCCCCCCcccccccCC----CCcC
Confidence 999999999999999999999999999999999999999999966999999999999999999999996532 2469
Q ss_pred cCCCCccCccccchhhhhhhhhhhhhhhhhhcccccCCC-CCCCHHHHHHHhhcCccCcch--hhhhhc-cc-chhhhhc
Q 002672 295 VPRDEEFSAIKETTFVIRGLFGQLRSLIPNLKAEFVDTD-GFPNFTEIDKLFREGVKIKDA--EFWKSL-LP-GFVEEIK 369 (894)
Q Consensus 295 vPrDe~f~~~K~~~f~~~~~~~~~~~~~p~l~~~~~~~~-~f~sf~di~~ly~~~~~~~~~--~~~~~~-~~-~~~~~~~ 369 (894)
|||||+|+++|++||+++++|+++|+++|.|+++++.++ +|++|+||++||++|++||.. ..++.+ +| .+.+.++
T Consensus 316 vPrDE~f~~~K~~~f~~~~lk~~~~~~~p~~~~~~~~~~~~F~~f~~i~~Ly~~g~~l~~~~~~~~~~~p~~~~~~~~i~ 395 (918)
T PLN02305 316 VPRDETFEEIKRNTFSAGRLKALLHNLIPSIAAALSSSDIPFTCFSDIDKLYNDGILLKTEEPKDIGLNPFLGNFMKQVL 395 (918)
T ss_pred CCCCCCcccchhhhHHHHHHHHHHHhhhhHHHHhcCCCCCCCCCHHHHHHHhccCCcCCchhhhhhhcCCchHHHHHHhh
Confidence 999999999999999999999999999999999998888 999999999999999999974 233332 32 5556668
Q ss_pred ccccccccccCccccccCcccccccHHHHHHHhcCCCccchhhccCCCCCCCCCCCCCCCCCCcccHHHHHhhccCcccH
Q 002672 370 DIGDFFLRFTSPETFKRDRFFWFRDEEFARETLAGLNPCSIRLITEWPLKSSLDPKIYGPSESAITTEMIESEIKGCTTV 449 (894)
Q Consensus 370 ~~~~~~l~~p~P~~~~~d~~~W~~DeeFarQ~LaG~NP~~I~r~~e~P~~s~ld~~~yg~~~s~IT~e~i~~~l~g~~tl 449 (894)
+++|.+||||+|+||++|+++|++|+|||||+|||+||++|+||++||++|+|||++||+++|+||+|||+..|+| +||
T Consensus 396 ~~~~~~lkf~~P~vi~~d~~~W~~DeeFaRQ~LaGvNP~~I~rl~efP~~skldp~~yG~~~s~iT~e~ve~~L~G-~Tl 474 (918)
T PLN02305 396 SVSERLLKYDIPAVIKRDRFAWLRDNEFARQALAGVNPVNIEILKEFPILSKLDPAVYGPPESALTEELIERELEG-MTV 474 (918)
T ss_pred hcccccccCCCcceeecccccccChHHHHHHHHcCCCChheeeccccCCccccCccccCCcCCCcCHHHHHhhcCC-CcH
Confidence 8899999999999999999999999999999999999999999999999999999999999999999999999998 999
Q ss_pred HHHhcCCceEEecccccccccccccccCCCccccccceEEeeCCCCceeeEEEEecCCCCCCCCCCceeeeCCCCCCCch
Q 002672 450 KEALNQKKLFILDYHDLFLPYVEQVRELGDRTLYGSRTVFYLNPDGTLRPLAIELTRPPMDGKPQWKQAFTPSSDSTKSW 529 (894)
Q Consensus 450 ~~al~~grLFi~Dy~d~~lp~~~~in~~~g~~~yA~~~Lffl~~dG~L~PlAIqL~~p~~~~~~~~~~VftP~d~~~~~~ 529 (894)
+|||++|||||+||||++|||+.++|.++++++|||+||||++++|+|+||||||+++++++++.+++||||+++++++|
T Consensus 475 eeAl~~~rLFIlDy~dl~lp~l~~in~l~~~~~YAprtLffL~~dG~L~PlAIqL~~~p~~~~p~~~~VftP~~d~~~~w 554 (918)
T PLN02305 475 EKAIEEKRLFILDYHDMLLPFIEKMNSLPERKAYASRTVFFYSKAGALRPIAIELSLPPTPSSPGNKFVYTHGHDATTHW 554 (918)
T ss_pred HHHHHcCCEEEEechhhhCcccccccccCCcccccceeEEEECCCCCEeeEEEEeeCCCCCCCCCcceeeCCCCCCCCch
Confidence 99999999999999999999999999999999999999999999999999999999998877777889999987777899
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhhcccchhhHHHHHHhccCCCcChhhHhcchhhhhhhhchHHHHHcccCCCccccccc
Q 002672 530 LWKLAKAHVLAHDSGYHQLISHWLRTHCSVEPYAIAAHRQLSAMHPINRLLKPHFRYTMEINSLARQSLINAGGVIESTF 609 (894)
Q Consensus 530 ~W~LAK~~v~~aD~~~HqlisHllrTHlv~EpfiIAt~RqLs~~HPI~kLL~PHfr~Tl~IN~lAR~~LI~~gGiie~~~ 609 (894)
.|+||||||++||++|||+|+||++||+||||||||||||||++|||||||+||||+||+||++||++|||+||+||++|
T Consensus 555 ~W~LAK~~V~~aD~~~HQlisHlLrTHlv~EpfiIAT~RqLs~~HPI~kLL~PHfr~TL~INalAR~~LIn~gGiie~~f 634 (918)
T PLN02305 555 IWKLAKAHVCSNDAGVHQLVNHWLRTHACMEPYIIATHRQLSAMHPIYKLLHPHMRYTLEINALARQSLINGGGIIEACF 634 (918)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHhhHHHHHHHHHHHHhccCCccCCHHHHHHHHHHHHHHHHHHHHHhccCCCCceeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHhccCCCCCCCCchHHHhcCCCCCCCCCCCcccccccCCccchhhHHHHHHHHHHHhhccccccccc
Q 002672 610 LPGKYSMLLSSIIYDKQWRFDHQALPQDLISRGMAAKDPSSPHGLKLTIEDYPFAQDGLDLWDIIKQWVTDYVSHYYPDP 689 (894)
Q Consensus 610 ~~G~~~~elss~~Yk~~w~f~~~~lP~DL~~RG~~~~D~~~phgl~l~l~dYpYrdDGL~IW~AI~~~V~~yv~~YY~~D 689 (894)
++|+|+|+|++++|++.|+|++++||+||++|||+++|+++|||++|.|||||||+|||+||+||++||++||++||++|
T Consensus 635 spg~~~~elss~aYk~~w~Fd~~~LP~DL~kRGva~~D~~~p~gl~l~ipdYPYrdDGL~IW~AIk~wV~~yV~~YY~~D 714 (918)
T PLN02305 635 SPGKYAMELSSAAYKSMWRFDMEALPADLIRRGMAEEDPSMPCGVRLVIEDYPYAADGLLIWSAIKEWVESYVDHFYSEP 714 (918)
T ss_pred ccchhHHHHHHHHHHhcCcCccccCHHHHHHcCCCccCCCCcccccccCCCCchhhhhHHHHHHHHHHHHHHHHhhCCCh
Confidence 99999999999999988999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCHHHHHHHHHHHhccCCCCCCCCCCCCCCChhHHHHHHhhheeccccccccccccccccccccCCccccccCCCC
Q 002672 690 SLVESDEELQAWWTEIRTVGHGDKQDETWWPVLNSPKDLIDTITSIVWVASGLHAAVNFGQYEYAAYFPNRPTIARANMP 769 (894)
Q Consensus 690 ~~V~~D~ELQaW~~Ei~~~G~~d~kd~p~~P~l~T~~eLi~~lT~iI~~aSaqHAAVNfgQy~y~gfvPN~P~~~r~p~P 769 (894)
++|++|.|||+||+||+++||+|+++.+|||+|+|+++||++||+|||+|||||||||||||+|+||+||+|++||++||
T Consensus 715 ~~V~~D~ELQaW~~Ei~~~Gh~d~kd~~~~p~l~T~~eLi~~lT~IIwtaSaqHAAVNFgQydy~gfvPN~P~~~Rrp~P 794 (918)
T PLN02305 715 NSITSDLELQAWWDEIKNKGHYDKRNEPWWPKLNTKEDLSGILTTMIWIASGQHAAINFGQYPFGGYVPNRPTLMRKLIP 794 (918)
T ss_pred hhhccCHHHHHHHHHHHhcCCCCCCCCCCCcCCcCHHHHHHHHHhhhhhcchhhhhhhcCCcccccccCCCchhhcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChhHHHHhhhCcHHHHHhcCCChHHHHHHHHHHHhhcCCCCCCccccCCCCC--CCCCcHHHHHHHHHHHHHHHHH
Q 002672 770 NEDPSDDEWQIFFERPEAALLTTFPNQRQATAVISVLDVLSAHSPDEDYLGKYMEP--AWGEDKIIKGAFEKFQGRLMEL 847 (894)
Q Consensus 770 ~~~~~~~e~~~l~~~~e~~~L~tLP~~~qa~~~m~~~~~LS~~~~de~yLG~~~~~--~~~~d~~~~~a~~~F~~~L~~I 847 (894)
++++. ++++|+.+||++||++||++.||+.+|+++++||+|++||+|||++.++ .|+.|+++++||++|+++|++|
T Consensus 795 ~~~~~--~~~~l~~~pe~~~L~tLP~~~qa~~~mav~~iLS~hs~de~yLG~~~~~~~~w~~D~~~~~A~~rF~~~L~eI 872 (918)
T PLN02305 795 QENDP--DYEKFIRNPQYTFLSSLPTQLQATKVMAVQDTLSTHSPDEEYLGELRHLHSHWINDHEVVKLFNKFSARLEEI 872 (918)
T ss_pred CCCCc--hHHHhhhChHHHHHHHCCcHHHHHHHHHHHHHhccCCCCcccccCCCCcccccccCHHHHHHHHHHHHHHHHH
Confidence 98876 8999999999999999999999999999999999999999999999886 7999999999999999999999
Q ss_pred HHHHhhhcccccccccCCCCCCCceeeccCCCCCCCccCCcCccccC
Q 002672 848 KGIINLRNADKNLKNRHGAGSLPYELLMPLADKSGVTGKGVPYSISI 894 (894)
Q Consensus 848 e~~I~~RN~~~~lknr~g~~~~PY~~L~Ps~~~~g~t~~gIPnSIsI 894 (894)
|++|++||++++||||+||+++||+||+|++ ++|||||||||||||
T Consensus 873 E~~I~~RN~~~~lkNR~G~~~~PY~lL~P~s-~~G~T~rgIPNSISI 918 (918)
T PLN02305 873 EKTINERNKDIRLKNRNGAGIPPYELLLPTS-GPGVTGRGIPNSISI 918 (918)
T ss_pred HHHHHHHhCCccccccCCCCCCCccccCCCC-CCCCCcCCCCCcccC
Confidence 9999999999999999999999999999999 999999999999998
No 2
>PLN02264 lipoxygenase
Probab=100.00 E-value=1.2e-260 Score=2247.84 Aligned_cols=818 Identities=48% Similarity=0.883 Sum_probs=781.0
Q ss_pred eeeeeEEEecCCCCCCCCC--CcccchhhhhcCCcEEEEEEeccCCCCC---------cccCccccccccccccceEEEE
Q 002672 66 NGVTAVVTVRPPINPLTAG--GQVIDDVEDLFSKSLQLELVSAKDENKP---------TISGNAKIKGVVVKDCEVQYEA 134 (894)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~--~~~~d~~~~~~g~~v~l~Lvs~~~~~~~---------~l~~~~~~~~~~~~~~~~~y~v 134 (894)
++++++++|++++...++. ++++|+++|++|++|+|||||++.++++ .|++|.++. ..++++++|+|
T Consensus 85 ~~i~~~v~~~~~~~~~~~~~~~~~~D~~~~~~G~~v~lqLVSs~~~~~tg~~~~~~~a~l~~~~~~~--~~~~~~~~y~~ 162 (919)
T PLN02264 85 FKVRAVVTVRNKNKEDLKETLVKHLDAFTDKIGRNVVLELISTQVDPKTKEPKKSKAAVLKDWSKKS--NIKAERVHYTA 162 (919)
T ss_pred EEEEEEEEEEeccccchhhcccchhhHHHHHhCCeEEEEEEeccccCCCCCccCCCcchhcccccCC--CCCCCceEEEE
Confidence 7788888888877665554 6889999999999999999999988765 599998754 43566679999
Q ss_pred EEeccCCCCceeEEEEEeCCCCceeeeeEEEeecCCCeEEEecCCCccCCC-CCCCeeeecCcccccCCCChhhHHHHHH
Q 002672 135 EFQVPVDFGEIGAILVVNEHALEMYLKDIVLDGLPSGLVTITCESWVQPNT-SKDPRIFFTNKSYLPSKTPNGLQKLRYA 213 (894)
Q Consensus 135 ~f~~~~~~G~pgai~v~n~~~~e~~l~~i~l~~~p~g~~~F~c~sWv~~~~-~~~~r~ff~nk~yLP~~tp~~L~~~R~~ 213 (894)
+|+|+++||+||||+|+|.|++||||++|+|+++|+|+|||+||||||+.+ ++.+||||+||+|||++||++|++||++
T Consensus 163 ~F~~~~~fG~pGAi~V~N~h~~EffL~~itle~~p~g~v~F~cnSWV~p~~~~~~~RiFF~Nk~YLP~~tP~~l~~~Re~ 242 (919)
T PLN02264 163 EFTVDSAFGSPGAITVTNKHQKEFFLESITIEGFACGPVHFPCNSWVQSQKDHPGKRIFFTNQPYLPSETPAGLRALREK 242 (919)
T ss_pred EEEeccccCCcceEEEEeCCCceEEEEEEEeccCCCCcEEEecCCccccCcCCCCCceEecCCCcCcccCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred HHHhhhcCCCcccccCCeeeeccccCCCCCCCCccccccccCCCCCCCCCCccCCCCCCCCCCCCccccCCCCCCCCCCC
Q 002672 214 ELVNLRGNGEGERQKADRIYDYDVYNDLGDPDEDEELKRPVLGGKQHPYPRRCRTGRPHCKTDEASEERVPSKSLIPISP 293 (894)
Q Consensus 214 EL~~lrg~g~g~r~~~driYdy~~yndlG~Pd~~~~~~rpvlgg~~~Pyprr~rtgr~~~~~dp~~e~r~~~~~~~~~~~ 293 (894)
||++|||||+||||+||||||||+|||||+||++++++||||||++|||||||||||+||++||.+|||.... ..|
T Consensus 243 eL~~lRGdg~Gerk~~dRiYdYd~YNDLG~Pd~~~~~~RpvLGG~~~PYPRR~RTGR~~t~~dp~~Esr~~~~----~~i 318 (919)
T PLN02264 243 ELRNLRGDGKGVRKLSDRIYDFDVYNDLGNPDKSRELARPTLGGKKIPYPRRCRTGRLPTDSDMMAESRVEKP----LPM 318 (919)
T ss_pred HHHHhcCCCCCcCCcccchhhhhhhccCCCCCCCccccCcccCCCCCCCCCCCcCCCCCCCCCCcccccccCC----Cce
Confidence 9999999999999999999999999999999999999999999977999999999999999999999996532 246
Q ss_pred ccCCCCccCccccchhhhhhhhhhhhhhhhhhcccccCCCCCCCHHHHHHHhhcCccCcch---hhhhhc-ccchhhhhc
Q 002672 294 YVPRDEEFSAIKETTFVIRGLFGQLRSLIPNLKAEFVDTDGFPNFTEIDKLFREGVKIKDA---EFWKSL-LPGFVEEIK 369 (894)
Q Consensus 294 yvPrDe~f~~~K~~~f~~~~~~~~~~~~~p~l~~~~~~~~~f~sf~di~~ly~~~~~~~~~---~~~~~~-~~~~~~~~~ 369 (894)
||||||+|+++|+++|+++++|+++|+++|.|+++++.+ +|+||+||++||++|++||.. ..++++ +|.+.+.++
T Consensus 319 YvPrDE~f~~~K~~~f~~~~lk~~~~~~~p~~~~~~~~~-~F~~f~~i~~Ly~~g~~l~~~~~~~~~~~~p~~~~~~~~~ 397 (919)
T PLN02264 319 YVPRDEQFEESKQDTFAAGRLKAVLHNLIPSLKASILAE-DFANFGEIDSLYKEGLLLKLGFQDDIFKKFPLPKVVTTLQ 397 (919)
T ss_pred eCCCCCCcccchhhhHHHHHHHHHHHHhhhhhhhhcCCC-CCCCHHHHHHHHhcCCcCCcchhhhHhhcCChHHHHHHhh
Confidence 999999999999999999999999999999999998866 999999999999999999974 234443 335666668
Q ss_pred ccccccccccCccccccCcccccccHHHHHHHhcCCCccchhhccCCCCCCCCCCCCCCCCCCcccHHHHHhhccCcccH
Q 002672 370 DIGDFFLRFTSPETFKRDRFFWFRDEEFARETLAGLNPCSIRLITEWPLKSSLDPKIYGPSESAITTEMIESEIKGCTTV 449 (894)
Q Consensus 370 ~~~~~~l~~p~P~~~~~d~~~W~~DeeFarQ~LaG~NP~~I~r~~e~P~~s~ld~~~yg~~~s~IT~e~i~~~l~g~~tl 449 (894)
++++.+||||+|++|++|+++|++|+|||||+|||+||++|+||++||++|+|||+.||+++|+||++||+..|+| +||
T Consensus 398 ~~~~~~lkf~~P~vi~~d~~~W~~DeeFarQ~LaGvNP~~I~rl~e~P~~s~ld~~~yg~~~s~it~e~v~~~L~G-~Tl 476 (919)
T PLN02264 398 ESSEGLLKYDTPKILSKDKFAWLRDDEFARQAIAGINPVNIERVKVFPPVSNLDPEIYGPQHSALTEDHIIGHLDG-LSV 476 (919)
T ss_pred hcccccccCCCCceeecChhhccCHHHHHHHHHcCCCchhhhhhhhcCCCCCCCHhhcCCccchhhHHHHhhccCC-CcH
Confidence 8899999999999999999999999999999999999999999999999999999999999999999999999998 999
Q ss_pred HHHhcCCceEEecccccccccccccccCCCccccccceEEeeCCCCceeeEEEEecCCCCCCCCCCceeeeCCCCCCCch
Q 002672 450 KEALNQKKLFILDYHDLFLPYVEQVRELGDRTLYGSRTVFYLNPDGTLRPLAIELTRPPMDGKPQWKQAFTPSSDSTKSW 529 (894)
Q Consensus 450 ~~al~~grLFi~Dy~d~~lp~~~~in~~~g~~~yA~~~Lffl~~dG~L~PlAIqL~~p~~~~~~~~~~VftP~d~~~~~~ 529 (894)
+|||++|||||+||||++|||++++|.++++++|||+||||++++|+|+||||||+++++.+++++++||||+++++++|
T Consensus 477 ~eAl~~~rLFilDy~d~~lp~l~~in~~~g~~~YAprtLFfL~~dG~L~PlAIqL~~p~~~~~~~~~~VftP~~d~~~~w 556 (919)
T PLN02264 477 QQALEENRLFMVDYHDIYLPFLDRINALDGRKAYATRTIFFLTRLGTLKPIAIELSLPPSGPNSRSKRVVTPPVDATSNW 556 (919)
T ss_pred HHHHHcCCEEEEeChhhhhhhhhhhccCCCcEeEcceEEEEECCCCCEeeEEEEecCCCCCCCcCcceeECCCCCCCCch
Confidence 99999999999999999999999999999999999999999999999999999999998776667789999977777899
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhhcccchhhHHHHHHhccCCCcChhhHhcchhhhhhhhchHHHHHcccCCCccccccc
Q 002672 530 LWKLAKAHVLAHDSGYHQLISHWLRTHCSVEPYAIAAHRQLSAMHPINRLLKPHFRYTMEINSLARQSLINAGGVIESTF 609 (894)
Q Consensus 530 ~W~LAK~~v~~aD~~~HqlisHllrTHlv~EpfiIAt~RqLs~~HPI~kLL~PHfr~Tl~IN~lAR~~LI~~gGiie~~~ 609 (894)
.|+||||||++||++|||+|+||++||++||||||||+||||++|||||||.||||+||+||++||++|||+||++|++|
T Consensus 557 ~W~LAK~~V~~aD~~~HQlisHllrTHlv~EpfiIAt~RqLs~~HPI~kLL~PHfr~TL~INalAR~~LIn~gGiid~~f 636 (919)
T PLN02264 557 MWQLAKAHVCSNDAGVHQLVNHWLRTHACLEPFILAAHRQLSAMHPIFKLLDPHMRYTLEINALARQTLISADGVIESCF 636 (919)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhhhcccCCccCcHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHhccCCCCCCCCchHHHhcCCCCCCCCCCCcccccccCCccchhhHHHHHHHHHHHhhccccccccc
Q 002672 610 LPGKYSMLLSSIIYDKQWRFDHQALPQDLISRGMAAKDPSSPHGLKLTIEDYPFAQDGLDLWDIIKQWVTDYVSHYYPDP 689 (894)
Q Consensus 610 ~~G~~~~elss~~Yk~~w~f~~~~lP~DL~~RG~~~~D~~~phgl~l~l~dYpYrdDGL~IW~AI~~~V~~yv~~YY~~D 689 (894)
++|+|+|+|++++|++.|+|++++||+||++|||+++|+++|||+++.|||||||+|||+||+||++||++||++||++|
T Consensus 637 ~pg~~~~elss~aYk~~W~F~~~~LP~DL~~RGv~~~D~~~phgl~l~ipdYPYrdDGL~iW~AIk~~V~~yv~~YY~~D 716 (919)
T PLN02264 637 TAGQYGMEISAAAYKNSWRFDMEGLPADLIRRGMAVPDPTQPHGLKLLIEDYPYANDGLLLWSAIQTWVRTYVERYYPDP 716 (919)
T ss_pred ccchhHHHHHHHHHHhccCCccccCHHHHHHcCCCCCCcccccchhhccCCCcchhhHHHHHHHHHHHHHHHHHHhCCCh
Confidence 99999999999999977999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCHHHHHHHHHHHhccCCCCCCCCCCCCCCChhHHHHHHhhheeccccccccccccccccccccCCccccccCCCC
Q 002672 690 SLVESDEELQAWWTEIRTVGHGDKQDETWWPVLNSPKDLIDTITSIVWVASGLHAAVNFGQYEYAAYFPNRPTIARANMP 769 (894)
Q Consensus 690 ~~V~~D~ELQaW~~Ei~~~G~~d~kd~p~~P~l~T~~eLi~~lT~iI~~aSaqHAAVNfgQy~y~gfvPN~P~~~r~p~P 769 (894)
++|++|.|||+||+||++.||+|+++++|||+|+|+++||++||+|||+|||||||||||||+|+||+||+|++||+|||
T Consensus 717 ~~V~~D~ELQaW~~Ei~~~Gh~d~~d~~~~p~l~T~~eLi~~lT~IIf~aSaqHAAVNFgQydy~gfvPN~P~~~rrp~P 796 (919)
T PLN02264 717 SLICTDKELQAWYSESINVGHADLRDADWWPKLSTVDDLVSILTTLIWLASAQHAALNFGQYPYGGYVPNRPPLMRRLIP 796 (919)
T ss_pred hhhcCCHHHHHHHHHHHhccCCCCcCCCCCCCCCCHHHHHHHHHHHHHhhhhhhhhhhcCcccccccCCCCChHhcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChhHHHHhhhCcHHHHHhcCCChHHHHHHHHHHHhhcCCCCCCccccCCCCC-CCCCcHHHHHHHHHHHHHHHHHH
Q 002672 770 NEDPSDDEWQIFFERPEAALLTTFPNQRQATAVISVLDVLSAHSPDEDYLGKYMEP-AWGEDKIIKGAFEKFQGRLMELK 848 (894)
Q Consensus 770 ~~~~~~~e~~~l~~~~e~~~L~tLP~~~qa~~~m~~~~~LS~~~~de~yLG~~~~~-~~~~d~~~~~a~~~F~~~L~~Ie 848 (894)
++++. ||++|+.+|+++||++||++.||+.+|+++++||+|++||+|||++..+ .|+.|+++++||++|+++|++||
T Consensus 797 ~~~~~--e~~~~~~~pe~~~L~tlP~~~qt~~~ms~~~iLS~hs~dE~yLG~~~~~~~w~~D~~~~~af~rF~~~L~eIe 874 (919)
T PLN02264 797 DESDP--EYASFLADPQKYYFSSMPSLLQTTKFMAVVDTLSTHSPDEEYIGERQQPSIWTGDAEIVEAFYGFSAEIGRIE 874 (919)
T ss_pred CCCCh--hhhhhhcChHHHHHHHCCCHHHHHHHHHHHHHHhhcCCCceeccCCCCccccccCHHHHHHHHHHHHHHHHHH
Confidence 98875 8999999999999999999999999999999999999999999998765 79999999999999999999999
Q ss_pred HHHhhhcccccccccCCCCCCCceeeccCCCCCCCccCCcCccccC
Q 002672 849 GIINLRNADKNLKNRHGAGSLPYELLMPLADKSGVTGKGVPYSISI 894 (894)
Q Consensus 849 ~~I~~RN~~~~lknr~g~~~~PY~~L~Ps~~~~g~t~~gIPnSIsI 894 (894)
++|++||++++||||+||+++||+||+|++ ++|||||||||||||
T Consensus 875 ~~I~~RN~~~~~knR~G~~~~PY~lL~P~s-~~G~T~~gIPNSISI 919 (919)
T PLN02264 875 KEIEKRNADPSRRNRCGAGVLPYELLAPSS-EPGVTCRGVPNSVSI 919 (919)
T ss_pred HHHHHHcCCccccccCCCCCCCceeeCCCC-CCCCCcCCCCCcccC
Confidence 999999999999999999999999999999 999999999999998
No 3
>PLN02337 lipoxygenase
Probab=100.00 E-value=1.1e-256 Score=2223.19 Aligned_cols=819 Identities=46% Similarity=0.829 Sum_probs=775.4
Q ss_pred ccccceeeeccc-eeeeeEEEecCCCCCCCCCCcccchhhhhcCCcEEEEEEeccCCC-CC----------cccCccccc
Q 002672 54 NSVKAMADTAVS-NGVTAVVTVRPPINPLTAGGQVIDDVEDLFSKSLQLELVSAKDEN-KP----------TISGNAKIK 121 (894)
Q Consensus 54 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~v~l~Lvs~~~~~-~~----------~l~~~~~~~ 121 (894)
++||+|++|+|+ ++++++. ++++|+++|++|++|+|||||++.++ ++ .|++|.++.
T Consensus 20 ~~~~~v~l~~k~~ld~~~~~------------~~~lD~~~~l~G~~v~lqLvS~~~~~p~~g~~gk~~k~a~l~~w~~~~ 87 (866)
T PLN02337 20 KIKGTVVLMKKNVLDFNDFN------------ASVLDRVHELLGKGVSLQLISSTVVDPENGLRGKLGKEAYLEKWITTI 87 (866)
T ss_pred eEEEEEEEEEecccchhhcc------------cchhhhHHHhcCCeEEEEEEeccccccccCCccccCCccchhhhccCC
Confidence 677888887776 5666544 58899999999999999999999876 22 788898764
Q ss_pred cccc-cccceEEEEEEeccCCCCceeEEEEEeCCCCceeeeeEEEeecCC-CeEEEecCCCccCCC-CCCCeeeecCccc
Q 002672 122 GVVV-KDCEVQYEAEFQVPVDFGEIGAILVVNEHALEMYLKDIVLDGLPS-GLVTITCESWVQPNT-SKDPRIFFTNKSY 198 (894)
Q Consensus 122 ~~~~-~~~~~~y~v~f~~~~~~G~pgai~v~n~~~~e~~l~~i~l~~~p~-g~~~F~c~sWv~~~~-~~~~r~ff~nk~y 198 (894)
.. ++++++|+|+|+|+++||+||||+|+|.|++||||++|+|+++|+ |+|||+||||||+.+ ++.+||||+||+|
T Consensus 88 --~~~~~~~~~y~~~F~~~~~fG~pGAi~V~N~h~~EffL~sitle~~p~~g~v~f~cnSWV~~~~~~~~~RiFF~nk~y 165 (866)
T PLN02337 88 --TSLTAGESAFKVTFDWDEKIGVPGAFIIKNNHHSEFYLKTVTLEDVPGHGRVHFVCNSWIYPAKRYRYDRVFFSNKTY 165 (866)
T ss_pred --CCCCCCceEEEEEEEecccCCCcceEEEEecCCceEEEEEEEEecCCCCCcEEEecCCccccCCCCCCCceEecCCCc
Confidence 33 666789999999999999999999999999999999999999995 899999999999998 9999999999999
Q ss_pred ccCCCChhhHHHHHHHHHhhhcCCCcccccCCeeeeccccCCCCCCCCccccccccCCC-CCCCCCCccCCCCCCCCCCC
Q 002672 199 LPSKTPNGLQKLRYAELVNLRGNGEGERQKADRIYDYDVYNDLGDPDEDEELKRPVLGG-KQHPYPRRCRTGRPHCKTDE 277 (894)
Q Consensus 199 LP~~tp~~L~~~R~~EL~~lrg~g~g~r~~~driYdy~~yndlG~Pd~~~~~~rpvlgg-~~~Pyprr~rtgr~~~~~dp 277 (894)
||++||++|++|||+||++|||||+||||+||||||||+|||||+||++++++|||||| ++|||||||||||+||++||
T Consensus 166 lp~~tP~~l~~~R~~eL~~lrG~g~gerk~~dRiYdyd~YnDlg~pd~~~~~~RpvLGg~~~~pyPRR~rTgr~~t~~dp 245 (866)
T PLN02337 166 LPSQTPAPLRPYREEELVNLRGDGKGELKEWDRVYDYDYYNDLGDPDKGNPYARPVLGGSQEYPYPRRGRTGRKPTKTDP 245 (866)
T ss_pred CcccccHHHHHHHHHHHHHhcCCCCCCCCcccchhhhhhhccCCCCCCCccccCccCCCCCCCCCCCcccCCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999 67999999999999999999
Q ss_pred CccccCCCCCCCCCCCccCCCCccCccccchhhhhhhhhhhhhhhhhhcccccCCC-CCCCHHHHHHHhhcCccCcchh-
Q 002672 278 ASEERVPSKSLIPISPYVPRDEEFSAIKETTFVIRGLFGQLRSLIPNLKAEFVDTD-GFPNFTEIDKLFREGVKIKDAE- 355 (894)
Q Consensus 278 ~~e~r~~~~~~~~~~~yvPrDe~f~~~K~~~f~~~~~~~~~~~~~p~l~~~~~~~~-~f~sf~di~~ly~~~~~~~~~~- 355 (894)
.+|+|.... +..|||||||+|+++|++||+++++|+++|+++|.|+++++.++ +|++|+||++||++|++||...
T Consensus 246 ~~esr~~~~---~~~~yvPrDE~f~~~k~~~f~~~~l~~~~~~~~p~~~~~~~~~~~~f~~f~~i~~ly~~g~~lp~~~~ 322 (866)
T PLN02337 246 NSESRLPLL---SLNIYVPRDERFGHLKMSDFLAYALKAIAQVLVPELEALFDKTPNEFDSFEDVLKLYEGGIKLPNGPL 322 (866)
T ss_pred ccccccccC---CCCcccCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHhhcCCCCCCchH
Confidence 999996531 23579999999999999999999999999999999999998887 9999999999999999999853
Q ss_pred --hhhhccc--chhhhhcccccccccccCccccccCcccccccHHHHHHHhcCCCccchhhccCCCCCCCCCCCCCCCCC
Q 002672 356 --FWKSLLP--GFVEEIKDIGDFFLRFTSPETFKRDRFFWFRDEEFARETLAGLNPCSIRLITEWPLKSSLDPKIYGPSE 431 (894)
Q Consensus 356 --~~~~~~~--~~~~~~~~~~~~~l~~p~P~~~~~d~~~W~~DeeFarQ~LaG~NP~~I~r~~e~P~~s~ld~~~yg~~~ 431 (894)
.+++.+| .+++.++++++.+||||+|+||++|+++|++|+|||||+|||+||++|+||++||++|+|||++||+++
T Consensus 323 ~~~~~~~~p~~~~~~~~~~~~~~~l~fp~P~vi~~d~~~W~~DeeFarQ~LaG~NP~~I~rl~~~P~~~~ld~~~yg~~~ 402 (866)
T PLN02337 323 LEELRKNIPLEMLKELLRTDGEYLLKFPMPQVIKEDKSAWRTDEEFAREMLAGVNPVVIRRLTEFPPKSKLDPKKYGDQN 402 (866)
T ss_pred HHHhhhcChHHHHHHHHhhcccccccCCCCceeecccccccCHHHHHHHHhcCCCChheeecccCCCcccCChhhcCCcc
Confidence 3444444 466777888999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccHHHHHhhccCcccHHHHhcCCceEEecccccccccccccccCCCccccccceEEeeCCCCceeeEEEEecCCCCCC
Q 002672 432 SAITTEMIESEIKGCTTVKEALNQKKLFILDYHDLFLPYVEQVRELGDRTLYGSRTVFYLNPDGTLRPLAIELTRPPMDG 511 (894)
Q Consensus 432 s~IT~e~i~~~l~g~~tl~~al~~grLFi~Dy~d~~lp~~~~in~~~g~~~yA~~~Lffl~~dG~L~PlAIqL~~p~~~~ 511 (894)
|+||++||++.|+| +||+|||++|||||+||||++|||+.++|...++ .|||+||||++++|+|+||||||++|+..+
T Consensus 403 s~iT~e~v~~~L~g-~Tl~eAl~~~rLfi~Dy~d~~lp~l~~in~~~~k-~yA~~tLffl~~dG~L~PlAIqL~~p~~~~ 480 (866)
T PLN02337 403 SSITEEHIEKNLEG-LTVQEALEKNRLFILDHHDALMPYLRRINSTSTK-TYATRTLLFLKDDGTLKPLAIELSLPHPQG 480 (866)
T ss_pred CccCHHHHHhccCC-ccHHHHHHcCCEEEEecchhcCcccccccCCCCc-cccceeEEEECCCCCEeEEEEEeccCCCCc
Confidence 99999999999988 9999999999999999999999999999986554 999999999999999999999999886543
Q ss_pred C--CCCceeeeCCCCCCCchHHHHHHHHHHhhhhhhhhhhhhhhcccchhhHHHHHHhccCCCcChhhHhcchhhhhhhh
Q 002672 512 K--PQWKQAFTPSSDSTKSWLWKLAKAHVLAHDSGYHQLISHWLRTHCSVEPYAIAAHRQLSAMHPINRLLKPHFRYTME 589 (894)
Q Consensus 512 ~--~~~~~VftP~d~~~~~~~W~LAK~~v~~aD~~~HqlisHllrTHlv~EpfiIAt~RqLs~~HPI~kLL~PHfr~Tl~ 589 (894)
+ +++++||||+++++++|.|+||||||++||+++||+|+||++||+++|||||||+||||++|||||||+||||+||+
T Consensus 481 ~~~g~~~~VfTP~~~~~~~~~W~lAK~~v~~aD~~~HqlisHllrTHlv~EpfiIAt~RqLs~~HPI~kLL~PHfr~Tl~ 560 (866)
T PLN02337 481 DKFGAVSKVYTPAEDGVEGSVWQLAKAYVAVNDSGYHQLISHWLNTHAVIEPFVIATNRQLSVLHPIHKLLHPHFRDTMN 560 (866)
T ss_pred ccCCCCCCeECCCCCCCCcchHHHHHHHHHHhhHHHHHHHHHHhhhhhhHHHHHHHHhccCCCcCcHHHHHHHHHHHHHH
Confidence 3 45799999998777899999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHcccCCCcccccccccchHHHHHHHHHHhccCCCCCCCCchHHHhcCCCCCCCCCCCcccccccCCccchhhHH
Q 002672 590 INSLARQSLINAGGVIESTFLPGKYSMLLSSIIYDKQWRFDHQALPQDLISRGMAAKDPSSPHGLKLTIEDYPFAQDGLD 669 (894)
Q Consensus 590 IN~lAR~~LI~~gGiie~~~~~G~~~~elss~~Yk~~w~f~~~~lP~DL~~RG~~~~D~~~phgl~l~l~dYpYrdDGL~ 669 (894)
||++||++||++||++|+++++|+|+|+|++++|++ |+|++++||+||++|||+++|+++|||+++.|||||||+|||+
T Consensus 561 IN~~AR~~LI~~gGiid~~~~~g~~~~els~~~yk~-w~F~~~~LP~DL~~RGv~~~D~~~p~g~~l~i~dYPYrdDGL~ 639 (866)
T PLN02337 561 INALARQILINAGGILESTVFPGKYALEMSSVVYKN-WNFTEQALPADLIKRGVAVEDPSSPHGVRLLIEDYPYAVDGLE 639 (866)
T ss_pred HHHHHHHheeCCCCeeeeeeccchhHHHHHHHHHhc-CCcccccCHHHHHHcCCCccccccccccccccCCCcchhhHHH
Confidence 999999999999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcccccccccccccCCHHHHHHHHHHHhccCCCCCCCCCCCCCCChhHHHHHHhhheecccccccccccc
Q 002672 670 LWDIIKQWVTDYVSHYYPDPSLVESDEELQAWWTEIRTVGHGDKQDETWWPVLNSPKDLIDTITSIVWVASGLHAAVNFG 749 (894)
Q Consensus 670 IW~AI~~~V~~yv~~YY~~D~~V~~D~ELQaW~~Ei~~~G~~d~kd~p~~P~l~T~~eLi~~lT~iI~~aSaqHAAVNfg 749 (894)
||+||++||++||++||++|++|++|.|||+||+||+++||+++++++|||+|+|+++||++||+|||+|||||||||||
T Consensus 640 iW~AI~~~V~~yv~~YY~~D~~V~~D~ELQaW~~Ei~~~G~gd~k~~~~~p~l~T~~eLv~~lT~iIf~aSaqHAAVNfg 719 (866)
T PLN02337 640 IWSAIETWVKEYCAFYYPTDDMVQGDTELQSWWKEVREEGHGDLKDEPWWPKMQTVAELIESCTIIIWIASALHAAVNFG 719 (866)
T ss_pred HHHHHHHHHHHHHHhhCCchHhhccCHHHHHHHHHHHhcCCCCccCCCCCCccCCHHHHHHHHHhhhhhcchhhhhhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCCccccccCCCCCCCCChhHHHHhhhCcHHHHHhcCCChHHHHHHHHHHHhhcCCCCCCccccCCCCCCCCC
Q 002672 750 QYEYAAYFPNRPTIARANMPNEDPSDDEWQIFFERPEAALLTTFPNQRQATAVISVLDVLSAHSPDEDYLGKYMEPAWGE 829 (894)
Q Consensus 750 Qy~y~gfvPN~P~~~r~p~P~~~~~~~e~~~l~~~~e~~~L~tLP~~~qa~~~m~~~~~LS~~~~de~yLG~~~~~~~~~ 829 (894)
||+|+||+||+|++||++||++++. |+.+|..+||+++|++||++.||+.+|+++++||+|++||+|||+|+++.|+.
T Consensus 720 Qy~y~gfvPN~P~~~r~~~P~~~~~--e~~~l~~~~e~~~L~tlp~~~qt~~~~~l~~lLS~~s~de~yLG~~~~~~w~~ 797 (866)
T PLN02337 720 QYPYAGYLPNRPTVSRRFMPEPGTP--EYEELEKNPDKAFLKTITAQLQTLLGISLIEILSRHSSDEVYLGQRDTPEWTS 797 (866)
T ss_pred CcccccccCCCchhhcCCCCCCCch--hhhhhccCcHHHHHHhCCCHHHHHHHHHHHHHhccCCCCceeccCcCCccccc
Confidence 9999999999999999999987665 89999999999999999999999999999999999999999999999889999
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCCCCCCceeeccCCC----CCCCccCCcCccccC
Q 002672 830 DKIIKGAFEKFQGRLMELKGIINLRNADKNLKNRHGAGSLPYELLMPLAD----KSGVTGKGVPYSISI 894 (894)
Q Consensus 830 d~~~~~a~~~F~~~L~~Ie~~I~~RN~~~~lknr~g~~~~PY~~L~Ps~~----~~g~t~~gIPnSIsI 894 (894)
|+++++|+++|+++|++||++|++||+++.+|||+||+++||+||+|++| ++|||||||||||||
T Consensus 798 d~~~~~a~~~F~~~L~eIe~~I~~RN~~~~~knr~G~~~~PY~lL~P~~~~~~~~~g~t~~gIPNSISI 866 (866)
T PLN02337 798 DAEPLEAFKRFGERLVEIENRIVDMNKDPRLKNRVGPVKMPYTLLYPNTSDYTGEGGLTGKGIPNSVSI 866 (866)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcccCCCCCCceeeCCCCccccCCCCcccCCCCCcccC
Confidence 99999999999999999999999999999999999999999999999874 799999999999998
No 4
>PF00305 Lipoxygenase: Lipoxygenase; InterPro: IPR013819 Lipoxygenases (1.13.11.- from EC) are a class of iron-containing dioxygenases which catalyses the hydroperoxidation of lipids, containing a cis,cis-1,4-pentadiene structure. They are common in plants where they may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding. In mammals a number of lipoxygenases isozymes are involved in the metabolism of prostaglandins and leukotrienes []. Sequence data is available for the following lipoxygenases: Plant lipoxygenases (1.13.11.12 from EC, IPR001246 from INTERPRO). Plants express a variety of cytosolic isozymes as well as what seems to be a chloroplast isozyme []. Mammalian arachidonate 5-lipoxygenase (1.13.11.34 from EC, IPR001885 from INTERPRO). Mammalian arachidonate 12-lipoxygenase (1.13.11.31 from EC, IPR001885 from INTERPRO). Mammalian erythroid cell-specific 15-lipoxygenase (1.13.11.33 from EC, IPR001885 from INTERPRO). The iron atom in lipoxygenases is bound by four ligands, three of which are histidine residues []. Six histidines are conserved in all lipoxygenase sequences, five of them are found clustered in a stretch of 40 amino acids. This region contains two of the three iron-ligands; the other histidines have been shown [] to be important for the activity of lipoxygenases. This entry represents the C-terminal region of these proteins.; GO: 0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 3FG3_D 3FG1_C 3FG4_D 3DY5_A 2FNQ_B 2P0M_A 3RDE_B 2IUJ_A 1RRL_B 1JNQ_A ....
Probab=100.00 E-value=1.2e-204 Score=1782.06 Aligned_cols=664 Identities=55% Similarity=0.973 Sum_probs=577.8
Q ss_pred ChhhHHHHHHHHHhhhcCCCcccccCCeeeeccccCCCCCCCCccccccccCCC-CCCCCCCccCCCCCCCCCCCCcccc
Q 002672 204 PNGLQKLRYAELVNLRGNGEGERQKADRIYDYDVYNDLGDPDEDEELKRPVLGG-KQHPYPRRCRTGRPHCKTDEASEER 282 (894)
Q Consensus 204 p~~L~~~R~~EL~~lrg~g~g~r~~~driYdy~~yndlG~Pd~~~~~~rpvlgg-~~~Pyprr~rtgr~~~~~dp~~e~r 282 (894)
|.+|+++|++||++|||||+||||+||||||||||||||+||++++++|||||| ++|||||||||||+|+++||.+|+|
T Consensus 1 ~~~l~~~R~~eL~~lrG~g~gerk~~dRiYdYd~YnDLG~pd~~~~~~RpvlGgs~~~PYPRR~RTGr~~~~~Dp~sEsr 80 (667)
T PF00305_consen 1 PAGLKKLREEELKNLRGDGTGERKEWDRIYDYDVYNDLGNPDKGPELARPVLGGSKEFPYPRRCRTGRPPTKTDPKSESR 80 (667)
T ss_dssp SGGGHHHHHHHHHHHHTTS-S---TT-----EE-B-SSSBGGGTGCG----BSSSSSS----EE----SBESSCTTSBGC
T ss_pred ChHHHHHHHHHHHHhcCCCCCccccccceeeeecccCCCCCCCCCcCCCCCCCCCCCCCCCccCCCCCCCCCCCccccCc
Confidence 789999999999999999999999999999999999999999999999999999 8999999999999999999999999
Q ss_pred CCCCCCCCCCCccCCCCccCccccchhhhhhhhhhhhhhhhhhcccccCCC-CCCCHHHHHHHhhcCccCcchhhhhhc-
Q 002672 283 VPSKSLIPISPYVPRDEEFSAIKETTFVIRGLFGQLRSLIPNLKAEFVDTD-GFPNFTEIDKLFREGVKIKDAEFWKSL- 360 (894)
Q Consensus 283 ~~~~~~~~~~~yvPrDe~f~~~K~~~f~~~~~~~~~~~~~p~l~~~~~~~~-~f~sf~di~~ly~~~~~~~~~~~~~~~- 360 (894)
... |||||||+|++.|+++|.++++|+++|.++|.|++++..+. +|+||+||++||++|++||.+...+..
T Consensus 81 ~~~-------~YVPRDE~F~~~K~~dF~~~~lks~~~~llP~L~~~~~~~~~eF~sF~dId~LY~~g~~l~~~~~~~~~~ 153 (667)
T PF00305_consen 81 SGD-------IYVPRDERFSEVKQSDFLANALKSLLHALLPALKSLFDDTPNEFDSFEDIDDLYEEGIKLPTDLLKKLIP 153 (667)
T ss_dssp -SS-------GGS-GGGS-SCSSGGGHHHHHHHHHHHTHHHHHHHHTTSSTSSCSSHHHHHHHHTTTEE--HHHHCCHTT
T ss_pred ccc-------ccCCccccccchhHHHHHHHHHHHHHHhHHHHHHHHhcccCcccCCHHHHHHHHhccccchhhHhhhcCc
Confidence 554 49999999999999999999999999999999999987777 999999999999999999955443332
Q ss_pred ccchhhhhcccccccccccCccccccCcccccccHHHHHHHhcCCCccchhhccCCCCCCCCCCCCCCCCCCcccHHHHH
Q 002672 361 LPGFVEEIKDIGDFFLRFTSPETFKRDRFFWFRDEEFARETLAGLNPCSIRLITEWPLKSSLDPKIYGPSESAITTEMIE 440 (894)
Q Consensus 361 ~~~~~~~~~~~~~~~l~~p~P~~~~~d~~~W~~DeeFarQ~LaG~NP~~I~r~~e~P~~s~ld~~~yg~~~s~IT~e~i~ 440 (894)
++.+.+.+..+++.++|||+|+|++.++++|++|+|||||+|||+||++|+||++||++|+|||++||+++|+||++||+
T Consensus 154 ~~~~~~~~~~~~~~~~kf~~p~v~~~~~~~W~~DeeFarQ~LaG~NP~~I~r~~e~P~~~~ld~~~yg~~~s~it~e~i~ 233 (667)
T PF00305_consen 154 LELLKELFRTDGENILKFPTPQVIERDRFAWRTDEEFARQRLAGVNPVVIRRLTEFPPKSKLDPAIYGDQESPITDEHIE 233 (667)
T ss_dssp STTCCTTSBETSSSEEB----HHHHCHHHHTTSHHHHHHHHHHSSSTTSEEE-SSSSTTS-SSHHCCTSSB-STTHHHHH
T ss_pred HHHHHHHHhhcccceeeCCCCccchhhhhccCChHHHHHHHHcCCCchHhhccccCCccccccHhhcCCccCCchHHHhh
Confidence 34577888888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCcccHHHHhcCCceEEecccccccccccccccCCCccccccceEEeeCCCCceeeEEEEecCCCCCCCCCCceeee
Q 002672 441 SEIKGCTTVKEALNQKKLFILDYHDLFLPYVEQVRELGDRTLYGSRTVFYLNPDGTLRPLAIELTRPPMDGKPQWKQAFT 520 (894)
Q Consensus 441 ~~l~g~~tl~~al~~grLFi~Dy~d~~lp~~~~in~~~g~~~yA~~~Lffl~~dG~L~PlAIqL~~p~~~~~~~~~~Vft 520 (894)
..|+| +||++||++|||||+|||++++|+++++|. .+++.|||+||||++++|+|+||||||++|+..+.++.++|||
T Consensus 234 ~~l~g-~tl~~al~~~rLfi~Dy~~~~~~~~~~i~~-~~~~~~A~~~Lf~l~~~g~L~PlAIqL~~p~~~~~~~~~~v~t 311 (667)
T PF00305_consen 234 PQLEG-LTLEEALKDGRLFILDYHDLFGPYLNKINE-KGRYAYAPRALFFLNPDGTLKPLAIQLSQPGPEGPPQFNPVFT 311 (667)
T ss_dssp HHCHC-S-HHHHHHTT-EEEEEEGGGTTHHHHHHTT-CCGBG-EEEEEEEEETTSEEEEEEEECSECBTTCS-EEEEEE-
T ss_pred hccCC-CcHHHHHhcCCeEEEeehhhcccccccccc-CCcEeccceeEEEEcCCCCEeeeEEeccCCCCcccCccceeee
Confidence 99999 999999999999999999999999999987 7899999999999999999999999998886555456789999
Q ss_pred CCCCCCCchHHHHHHHHHHhhhhhhhhhhhhhhcccchhhHHHHHHhccCCCcChhhHhcchhhhhhhhchHHHHHcccC
Q 002672 521 PSSDSTKSWLWKLAKAHVLAHDSGYHQLISHWLRTHCSVEPYAIAAHRQLSAMHPINRLLKPHFRYTMEINSLARQSLIN 600 (894)
Q Consensus 521 P~d~~~~~~~W~LAK~~v~~aD~~~HqlisHllrTHlv~EpfiIAt~RqLs~~HPI~kLL~PHfr~Tl~IN~lAR~~LI~ 600 (894)
|+++++.+|.|+||||||++||+++||+|+||++||+|||||||||+||||.+|||||||.||||+||+||++||++||+
T Consensus 312 P~~d~~~~~~W~lAK~~v~~aD~~~HqlisHll~THlv~Ep~~vAt~R~Ls~~HPi~kLL~PH~r~tl~IN~~Ar~~Li~ 391 (667)
T PF00305_consen 312 PSDDGTEDWLWLLAKAHVQVADANYHQLISHLLRTHLVMEPFIVATHRQLSEMHPIYKLLHPHFRYTLAINALARQSLIN 391 (667)
T ss_dssp TTSSSHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHS-TTSHHHHHHGGGGTTHHHHHHHHHHHTSS
T ss_pred cCCCCccchHHHHHHHHHHhhhHHHHHHHhhhhhhhhhhHHHHHHHhcCCCCCCCceeeccceeecchhhhHHHHHHhhc
Confidence 99665678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccccccchHHHHHHHHHHhccCCCCCCCCchHHHhcCCCCCCCCCCCcccccccCCccchhhHHHHHHHHHHHhh
Q 002672 601 AGGVIESTFLPGKYSMLLSSIIYDKQWRFDHQALPQDLISRGMAAKDPSSPHGLKLTIEDYPFAQDGLDLWDIIKQWVTD 680 (894)
Q Consensus 601 ~gGiie~~~~~G~~~~elss~~Yk~~w~f~~~~lP~DL~~RG~~~~D~~~phgl~l~l~dYpYrdDGL~IW~AI~~~V~~ 680 (894)
+||+||++|++|+++|+|++++|++ |+|++++||+||++|||+++|++++||+++.|||||||+|||+||+||++||++
T Consensus 392 ~gG~id~~~~~g~~~~~l~~~~y~~-~~f~~~~lP~dL~~RG~~~~D~~~~~g~~~~l~~YpY~dDgl~iW~aI~~~V~~ 470 (667)
T PF00305_consen 392 AGGIIDKTFSPGKYGMELSSRAYKN-WRFDDQALPADLKKRGMAVDDPSSPHGLRLVLPDYPYRDDGLLIWDAIKKFVSD 470 (667)
T ss_dssp TTSHHHHHSTTTTTHHHHHHHHHTT---GGGGSHHHHHHHTTSEEE-TTSTTSEETTSTT-HHHHHHHHHHHHHHHHHHH
T ss_pred cCcccccccchhhHHHHHHHHHHhh-CCcccccCHHHHHhhcccccccccccccccccccCChhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999 999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccccccCCHHHHHHHHHHHhccCCCCCCCCCCCCCCChhHHHHHHhhheeccccccccccccccccccccCCc
Q 002672 681 YVSHYYPDPSLVESDEELQAWWTEIRTVGHGDKQDETWWPVLNSPKDLIDTITSIVWVASGLHAAVNFGQYEYAAYFPNR 760 (894)
Q Consensus 681 yv~~YY~~D~~V~~D~ELQaW~~Ei~~~G~~d~kd~p~~P~l~T~~eLi~~lT~iI~~aSaqHAAVNfgQy~y~gfvPN~ 760 (894)
||++||++|++|++|.|||+||+||+++||+|+++.+||++|+|+++||++||+|||+|||||||||||||+|+||+||+
T Consensus 471 ~v~~yY~~d~~V~~D~ELQaW~~Ei~~~G~~~~~~~~~~~~i~t~~~Li~~lT~iI~~~S~qHaAVNfgQ~~y~g~~PN~ 550 (667)
T PF00305_consen 471 YVNLYYKSDEAVANDTELQAWWNEIRTVGHGDKKDEGFPPKIKTRDELIDILTTIIFTASAQHAAVNFGQYDYYGFVPNR 550 (667)
T ss_dssp HHHHHSSSHHHHHT-HHHHHHHHHHHHTTTTGGTTGTTSSSSSSHHHHHHHHHHHHHHHTHHHHHHHTTHHHHHSSGGGS
T ss_pred hhhhhcCCcceeCcCHHHHHHHHHHhcccccCcCcCCCCCCCCCHHHHHHHHHHHeeecchhhhhhcccccceeeecCCC
Confidence 99999999999999999999999999999999999888999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCCChhHHHHhhhCcHHHHHhcCCChHHHHHHHHHHHhhcCCCCCCccccCCCCCCCCCcHHHHHHHHHH
Q 002672 761 PTIARANMPNEDPSDDEWQIFFERPEAALLTTFPNQRQATAVISVLDVLSAHSPDEDYLGKYMEPAWGEDKIIKGAFEKF 840 (894)
Q Consensus 761 P~~~r~p~P~~~~~~~e~~~l~~~~e~~~L~tLP~~~qa~~~m~~~~~LS~~~~de~yLG~~~~~~~~~d~~~~~a~~~F 840 (894)
|++||+++|.+++.+.++++|.++||+++|++||++.||+.+|+++++||+|++||+|||+|++.+|+.|+++++|+++|
T Consensus 551 P~~~r~~~P~~~~~~~~~~~l~~~~e~~~l~~LP~~~~a~~~~~~~~~LS~~~~de~~Lg~~~~~~w~~d~~~~~a~~~F 630 (667)
T PF00305_consen 551 PTALRRPMPPPTTKEVTYEELLKDPEKDFLSTLPSKQQALLQMAVLELLSRHSPDEEYLGQYPEPHWFSDPEAKAAFERF 630 (667)
T ss_dssp -S-BSSSS--TSSSH--HHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTCB-TT--BTTT-SSTTSSSSHHHHHHHHHH
T ss_pred ChhhcccCCCCCcchhhhhhhccChHHHHHHhcCCHHHHHHHHHHHHHhccCCCCcccccCcCcccccccHHHHHHHHHH
Confidence 99999999988776334999999999999999999999999999999999999999999999988999999999999999
Q ss_pred HHHHHHHHHHHhhhcccccccccCCCCCCCceeeccC
Q 002672 841 QGRLMELKGIINLRNADKNLKNRHGAGSLPYELLMPL 877 (894)
Q Consensus 841 ~~~L~~Ie~~I~~RN~~~~lknr~g~~~~PY~~L~Ps 877 (894)
+++|++||++|++||+++++|||+|+|++||+||+||
T Consensus 631 ~~~L~~ie~~I~~RN~~~~~~nr~g~~~~PY~~L~Ps 667 (667)
T PF00305_consen 631 QEELKEIEEEIDERNKDRKLKNRNGPGKVPYTYLLPS 667 (667)
T ss_dssp HHHHHHHHHHHHHHHTTSSSGGGTTTTT----TTSST
T ss_pred HHHHHHHHHHHHHHhCCccccccCCCCCCCccccCCC
Confidence 9999999999999999999999999999999999997
No 5
>cd01751 PLAT_LH2 PLAT/ LH2 domain of plant lipoxygenase related proteins. Lipoxygenases are nonheme, nonsulfur iron dioxygenases that act on lipid substrates containing one or more (Z,Z)-1,4-pentadiene moieties. In plants, the immediate products are involved in defense mechanisms against pathogens and may be precursors of metabolic regulators. The generally proposed function of PLAT/LH2 domains is to mediate interaction with lipids or membrane bound proteins.
Probab=99.97 E-value=9.9e-32 Score=261.39 Aligned_cols=123 Identities=45% Similarity=0.679 Sum_probs=102.3
Q ss_pred eeeEEEecCCCCCCCCCC-cccchhhhhcCCcEEEEEEeccCCCCC---------cccCccccccccccccceEEEEEEe
Q 002672 68 VTAVVTVRPPINPLTAGG-QVIDDVEDLFSKSLQLELVSAKDENKP---------TISGNAKIKGVVVKDCEVQYEAEFQ 137 (894)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~-~~~d~~~~~~g~~v~l~Lvs~~~~~~~---------~l~~~~~~~~~~~~~~~~~y~v~f~ 137 (894)
++|+++|+++..+.+... +.+|++.|++|++|+|||||++.+|++ .|++|.++. +++..|+++|+
T Consensus 3 vka~V~v~~k~~~~~~~~~~~~D~~~~llGk~v~lqLVSs~~d~~tg~~k~~~~~~l~~~~~~~-----~~e~~y~~~F~ 77 (137)
T cd01751 3 VKATVTVMKKNKLDLNDDGSGLDDLDDLLGRSLLLELVSSELDPKTGKGKKGKAAFLEGWGKSL-----AGESAYEAEFE 77 (137)
T ss_pred EEEEEEEEEeeccccccccchhhhHHHhhCCeEEEEEEEeeecCCCCCcccccceeeecccccC-----CcceEEEEEEE
Confidence 444444444433322221 678999999999999999999998855 667776432 44579999999
Q ss_pred ccCCCCceeEEEEEeCCCCceeeeeEEEeecCC-CeEEEecCCCccCCC-CCCCeeeecC
Q 002672 138 VPVDFGEIGAILVVNEHALEMYLKDIVLDGLPS-GLVTITCESWVQPNT-SKDPRIFFTN 195 (894)
Q Consensus 138 ~~~~~G~pgai~v~n~~~~e~~l~~i~l~~~p~-g~~~F~c~sWv~~~~-~~~~r~ff~n 195 (894)
||++||+||||+|+|+|++||||++|+|+++|+ |++||+|||||||.+ ++.+||||+|
T Consensus 78 v~~~fG~pGAi~V~N~h~~EffLksitLe~~p~~g~v~F~CNSWVyp~~~~~~~RiFFsN 137 (137)
T cd01751 78 VPASFGPPGAVLVKNEHHSEFFLKSITLEGFGGSGTITFVCNSWVYPKKDYPDKRIFFPN 137 (137)
T ss_pred eecccCCccEEEEEECCCceEEEEEEEEeCCCCCccEEEEccccCccCCCCCCCCEEccC
Confidence 999999999999999999999999999999995 899999999999999 9999999997
No 6
>smart00308 LH2 Lipoxygenase homology 2 (beta barrel) domain.
Probab=99.20 E-value=8.8e-11 Score=109.07 Aligned_cols=79 Identities=39% Similarity=0.670 Sum_probs=61.9
Q ss_pred cEEEEEEeccCCCC-C---cccCccccccccccccceEEEEEEeccCCCCceeEEEEEeCC-CCceeeeeEEEeecCCC-
Q 002672 98 SLQLELVSAKDENK-P---TISGNAKIKGVVVKDCEVQYEAEFQVPVDFGEIGAILVVNEH-ALEMYLKDIVLDGLPSG- 171 (894)
Q Consensus 98 ~v~l~Lvs~~~~~~-~---~l~~~~~~~~~~~~~~~~~y~v~f~~~~~~G~pgai~v~n~~-~~e~~l~~i~l~~~p~g- 171 (894)
+|+|+|+|++.+.. + .+++|. | ..+. .|+..|+++.++|++++|+|++++ ..+|||++|+|++.+.|
T Consensus 20 ~V~l~L~g~~~~s~~~~~~~~~~~~--f--~~g~---~~~f~v~~~~~lG~l~~v~v~~d~~~~~w~l~~V~V~~~~~~~ 92 (105)
T smart00308 20 SVSLSLVGAEGDGKESKLDYLFKGI--F--ARGS---TYEFTFDVDEDFGELGAVKIKNEHRHPEWFLKSITVKDLPTGG 92 (105)
T ss_pred eEEEEEEeCCCCCcceeccccCCcc--c--cCCc---eEEEEEecccCCCCcEEEEEEeCCCCCCeEEEEEEEEECCCCC
Confidence 69999999985422 1 444443 4 4444 455555589999999999999999 79999999999876665
Q ss_pred eEEEecCCCccC
Q 002672 172 LVTITCESWVQP 183 (894)
Q Consensus 172 ~~~F~c~sWv~~ 183 (894)
.++|+||+||++
T Consensus 93 ~~~F~c~~Wl~~ 104 (105)
T smart00308 93 KYHFPCNSWVYP 104 (105)
T ss_pred EEEEEcCceeCC
Confidence 899999999986
No 7
>cd00113 PLAT PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin) domain or LH2 (Lipoxygenase homology 2) domain. It consists of an eight stranded beta-barrel. The domain can be found in various domain architectures, in case of lipoxygenases, alpha toxin, lipases and polycystin, but also as a single domain or as repeats.The putative function of this domain is to facilitate access to sequestered membrane or micelle bound substrates.
Probab=98.86 E-value=1.8e-08 Score=95.09 Aligned_cols=91 Identities=15% Similarity=0.287 Sum_probs=69.6
Q ss_pred CCcEEEEEEeccCC-CCCccc-CccccccccccccceEEEEEEeccCCCCceeEEEEEeCCCC---ceeeeeEEEeecCC
Q 002672 96 SKSLQLELVSAKDE-NKPTIS-GNAKIKGVVVKDCEVQYEAEFQVPVDFGEIGAILVVNEHAL---EMYLKDIVLDGLPS 170 (894)
Q Consensus 96 g~~v~l~Lvs~~~~-~~~~l~-~~~~~~~~~~~~~~~~y~v~f~~~~~~G~pgai~v~n~~~~---e~~l~~i~l~~~p~ 170 (894)
..+|+|+|+++... ....|. .+.. | ..|+. ++|.|+ ++.++|++.+|.|++++.. +|||++|+|++...
T Consensus 18 ~~~v~i~l~g~~g~s~~~~l~~~~~~-f--~~g~~-~~f~v~--~~~~lG~i~~v~l~~d~~g~~~~W~l~~V~V~~~~~ 91 (116)
T cd00113 18 DSNISLALYGENGNSSDIPILDGPGS-F--ERGST-DTFQID--LKLDIGDITKVYLRRDGSGLSDGWYCESITVQALGT 91 (116)
T ss_pred cCEEEEEEEeCCCCcccEEccCCCCc-c--cCCCc-eEEEEe--ccCCCcCeEEEEEEECCCCCCCCEEEeEEEEEeCCC
Confidence 35699999998754 222333 3332 5 55655 567665 6789999999999999875 99999999987666
Q ss_pred C-eEEEecCCCccCCC-CCCCeee
Q 002672 171 G-LVTITCESWVQPNT-SKDPRIF 192 (894)
Q Consensus 171 g-~~~F~c~sWv~~~~-~~~~r~f 192 (894)
| .++|+||+||.... ++..|+|
T Consensus 92 ~~~~~F~~~~Wl~~~~~~~~~r~~ 115 (116)
T cd00113 92 KKVYTFPVNRWVLGGKWYTSVRSL 115 (116)
T ss_pred CCEEEEEeCCCcccCCCCCceeec
Confidence 5 89999999999887 7777775
No 8
>PF01477 PLAT: PLAT/LH2 domain; InterPro: IPR001024 Lipoxygenases (1.13.11.- from EC) are a class of iron-containing dioxygenases which catalyses the hydroperoxidation of lipids, containing a cis,cis-1,4-pentadiene structure. They are common in plants where they may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding. In mammals a number of lipoxygenases isozymes are involved in the metabolism of prostaglandins and leukotrienes []. Sequence data is available for the following lipoxygenases: Plant lipoxygenases (1.13.11.12 from EC, IPR001246 from INTERPRO). Plants express a variety of cytosolic isozymes as well as what seems to be a chloroplast isozyme []. Mammalian arachidonate 5-lipoxygenase (1.13.11.34 from EC, IPR001885 from INTERPRO). Mammalian arachidonate 12-lipoxygenase (1.13.11.31 from EC, IPR001885 from INTERPRO). Mammalian erythroid cell-specific 15-lipoxygenase (1.13.11.33 from EC, IPR001885 from INTERPRO). The iron atom in lipoxygenases is bound by four ligands, three of which are histidine residues []. Six histidines are conserved in all lipoxygenase sequences, five of them are found clustered in a stretch of 40 amino acids. This region contains two of the three iron-ligands; the other histidines have been shown [] to be important for the activity of lipoxygenases. This entry represents a domain found in lipoxygenases and other enzymes. It is known as the PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin) domain or LH2 (Lipoxygenase homology) domain, is found in a variety of membrane or lipid associated proteins. Structurally, this domain forms a beta-sandwich composed of two sheets of four strands each [, , ]. The most highly conserved regions coincide with the beta-strands, with most of the highly conserved residues being buried within the protein. An exception to this is a surface lysine or arginine that occurs on the surface of the fifth beta-strand of the eukaryotic domains. In pancreatic lipase, the lysine in this position forms a salt bridge with the procolipase protein. The conservation of a charged surface residue may indicate the location of a conserved ligand-binding site. It is thought that this domain may mediate membrane attachment via other protein binding partners.; GO: 0005515 protein binding; PDB: 3FG3_D 3FG1_C 3FG4_D 3DY5_A 2FNQ_B 3O8Y_B 3V99_B 3V92_A 3V98_B 1HPL_A ....
Probab=98.86 E-value=5.2e-09 Score=97.63 Aligned_cols=90 Identities=23% Similarity=0.493 Sum_probs=68.1
Q ss_pred CcEEEEEEeccCC-CCCccc-CccccccccccccceEEEEEEeccCCCCceeEEEEEeC---CCCceeeeeEEEeecCCC
Q 002672 97 KSLQLELVSAKDE-NKPTIS-GNAKIKGVVVKDCEVQYEAEFQVPVDFGEIGAILVVNE---HALEMYLKDIVLDGLPSG 171 (894)
Q Consensus 97 ~~v~l~Lvs~~~~-~~~~l~-~~~~~~~~~~~~~~~~y~v~f~~~~~~G~pgai~v~n~---~~~e~~l~~i~l~~~p~g 171 (894)
.+|+|+|+++... ....|. .+. .. .++. ++|.++ .+.++|+|.+|.|.++ ....|||++|+|...+.|
T Consensus 17 ~~V~i~l~G~~g~s~~~~l~~~~~-~~---~g~~-d~F~i~--~~~~lG~i~~i~i~~~~~~~~~~W~l~~V~V~~~~~~ 89 (113)
T PF01477_consen 17 ANVYITLYGSKGKSGEIELLDPSG-FN---FGST-DTFTIE--TPEDLGEIQKIRIWHDGSGPSPSWYLDSVVVTDGETG 89 (113)
T ss_dssp SEEEEEEEETTEEEEEEEEEEEEE-TS---TTEE-EEEEEE--ESSCGCSEEEEEEEEESSSSSSEEEEEEEEEEETTTS
T ss_pred CeEEEEEEECCCCcceEEEeeeee-cc---cCce-EEeeee--ecccCCCCcEEEEEEccCCCccceEEEEEEEEeCCCC
Confidence 4599999997754 222222 121 11 1332 466655 6789999999999999 678999999999876666
Q ss_pred -eEEEecCCCccCCC-CCCCeeee
Q 002672 172 -LVTITCESWVQPNT-SKDPRIFF 193 (894)
Q Consensus 172 -~~~F~c~sWv~~~~-~~~~r~ff 193 (894)
.+.|+||+||.... ++..|+||
T Consensus 90 ~~~~F~~~~Wl~~~~~~~~~rvf~ 113 (113)
T PF01477_consen 90 RTYTFPCNRWLDPDKDYKTERVFF 113 (113)
T ss_dssp EEEEEEEEEEESTTEGCSSEEEEE
T ss_pred cEEEEEcCCEECCCCCCCCccEEC
Confidence 89999999999988 89999997
No 9
>cd02899 PLAT_SR Scavenger receptor protein. A subfamily of PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin) domain or LH2 (Lipoxygenase homology 2) domain. It consists of an eight stranded beta-barrel. The domain can be found in various domain architectures, in case of lipoxygenases, alpha toxin, lipases and polycystin, but also as a single domain or as repeats.The putative function of this domain is to facilitate access to sequestered membrane or micelle bound substrates. This subfamily contains Toxoplasma gondii Scavenger protein TgSR1.
Probab=98.85 E-value=9.7e-09 Score=97.38 Aligned_cols=78 Identities=17% Similarity=0.293 Sum_probs=63.0
Q ss_pred CcEEEEEEeccCC-CCCcccCccccccccccccceEEEEEEeccCCCCceeEEEEEeCC-CCceeeeeEEEeecCCC-eE
Q 002672 97 KSLQLELVSAKDE-NKPTISGNAKIKGVVVKDCEVQYEAEFQVPVDFGEIGAILVVNEH-ALEMYLKDIVLDGLPSG-LV 173 (894)
Q Consensus 97 ~~v~l~Lvs~~~~-~~~~l~~~~~~~~~~~~~~~~~y~v~f~~~~~~G~pgai~v~n~~-~~e~~l~~i~l~~~p~g-~~ 173 (894)
.+|+|+||+++.+ ++..|.+ +| ..|+. ++|.|+ ++++|++-.|+|.|.. .+.|||+.|+|++ |.| .+
T Consensus 19 ~~V~i~L~G~~g~S~~~~L~~---~F--~~G~~-d~F~v~---~~dLG~l~~i~l~n~g~~~~Wf~~~V~V~~-~~g~~~ 88 (109)
T cd02899 19 GTIEITLLGSSGRSNPKTLSQ---GF--YPGSL-KRIRFR---AADVGDINAIILSNTALNDPWYCDYVRIKS-EDGKVF 88 (109)
T ss_pred ceEEEEEEECCCCcCCEEccC---cc--CCCce-EEEEEC---ccccCceEEEEEECCCCCCCceeeEEEEEC-CCCCEE
Confidence 3599999999864 3335553 56 67777 688777 7899999999998877 4789999999986 876 88
Q ss_pred EEecCCCccCC
Q 002672 174 TITCESWVQPN 184 (894)
Q Consensus 174 ~F~c~sWv~~~ 184 (894)
+||||+|+..-
T Consensus 89 ~Fpc~rWla~~ 99 (109)
T cd02899 89 AFNVKRWIGYP 99 (109)
T ss_pred EEEcceeeCCc
Confidence 99999999753
No 10
>cd01753 PLAT_LOX PLAT domain of 12/15-lipoxygenase. As a unique subfamily of the mammalian lipoxygenases, they catalyze enzymatic lipid peroxidation in complex biological structures via direct dioxygenation of phospholipids and cholesterol esters of biomembranes and plasma lipoproteins. Both types of enzymes are cytosolic but need this domain to access their sequestered membrane or micelle bound substrates.
Probab=98.56 E-value=2.9e-07 Score=87.80 Aligned_cols=82 Identities=21% Similarity=0.332 Sum_probs=65.5
Q ss_pred cEEEEEEeccCC-CCCcccCccccccccccccceEEEEEEeccCCCCceeEEEEEeCC---CCceeeeeEEEeecCCC-e
Q 002672 98 SLQLELVSAKDE-NKPTISGNAKIKGVVVKDCEVQYEAEFQVPVDFGEIGAILVVNEH---ALEMYLKDIVLDGLPSG-L 172 (894)
Q Consensus 98 ~v~l~Lvs~~~~-~~~~l~~~~~~~~~~~~~~~~~y~v~f~~~~~~G~pgai~v~n~~---~~e~~l~~i~l~~~p~g-~ 172 (894)
+|+|+|++++.+ ++..|.....+| ..|+. +.|.|+ ++.++|++-.|.|..+. ...|||+.|+|++ +.| .
T Consensus 20 ~V~i~l~G~~g~S~~~~L~~~~~~F--erG~~-d~F~v~--~~~~lG~l~~i~i~~d~~g~~~~W~l~~V~V~~-~~~~~ 93 (113)
T cd01753 20 YIYLTLVGTAGESEKQLLDRPGYDF--ERGAV-DEYKVK--VPEDLGELLLVRLRKRKYLLFDAWFCNYITVTG-PGGDE 93 (113)
T ss_pred EEEEEEEECCCcccCEEcCCCCCcc--CCCCe-eEEEEe--cccCCCCcEEEEEEECCCCCCCCeeecEEEEEc-CCCCE
Confidence 599999998865 333665554457 66776 688887 67899999999999987 4799999999985 446 8
Q ss_pred EEEecCCCccCCC
Q 002672 173 VTITCESWVQPNT 185 (894)
Q Consensus 173 ~~F~c~sWv~~~~ 185 (894)
++||||+|+....
T Consensus 94 ~~F~c~rWl~~~~ 106 (113)
T cd01753 94 YHFPCYRWIEGYG 106 (113)
T ss_pred EEEEhHHeECCCC
Confidence 9999999998753
No 11
>cd01756 PLAT_repeat PLAT/LH2 domain repeats of family of proteins with unknown function. In general, PLAT/LH2 consists of an eight stranded beta-barrel and it's proposed function is to mediate interaction with lipids or membrane bound proteins.
Probab=98.49 E-value=8.9e-07 Score=84.97 Aligned_cols=90 Identities=14% Similarity=0.314 Sum_probs=69.3
Q ss_pred CcEEEEEEeccCC-CCCcccCc--cccccccccccceEEEEEEeccCCCCceeEEEEEeCCC---CceeeeeEEEeecCC
Q 002672 97 KSLQLELVSAKDE-NKPTISGN--AKIKGVVVKDCEVQYEAEFQVPVDFGEIGAILVVNEHA---LEMYLKDIVLDGLPS 170 (894)
Q Consensus 97 ~~v~l~Lvs~~~~-~~~~l~~~--~~~~~~~~~~~~~~y~v~f~~~~~~G~pgai~v~n~~~---~e~~l~~i~l~~~p~ 170 (894)
.+|+|+|+++... ++..|.++ ...| ..|+. ++|.++ . .++|++-.|.|..+.. ..|||+.|+|.+...
T Consensus 19 a~V~i~L~G~~g~s~~~~L~~~~~~~~F--erGs~-d~F~i~--~-~~lG~l~~i~i~~d~~g~~~~W~~~~V~V~~~~~ 92 (120)
T cd01756 19 ANVFITLYGENGDTGKRKLKKSNNKNKF--ERGQT-DKFTVE--A-VDLGKLKKIRIGHDNSGLGAGWFLDKVEIREPGT 92 (120)
T ss_pred cEEEEEEEeCCCccccEEccCCCcCCcc--cCCCe-EEEEEE--e-cCCCCeEEEEEEECCCCCCCCcEEeEEEEEECCC
Confidence 4599999998865 33467764 4456 66766 688887 4 7999999999999774 689999999986555
Q ss_pred C-eEEEecCCCccCCC--CCCCeee
Q 002672 171 G-LVTITCESWVQPNT--SKDPRIF 192 (894)
Q Consensus 171 g-~~~F~c~sWv~~~~--~~~~r~f 192 (894)
| .++||||+|+...+ ..-.|++
T Consensus 93 ~~~~~F~~~~Wl~~~~~dg~~~r~~ 117 (120)
T cd01756 93 GDEYTFPCNRWLDKDEDDGQIVREL 117 (120)
T ss_pred ceEEEEEeCCccCCCCCCCEEEEEE
Confidence 6 89999999999876 3334654
No 12
>cd01752 PLAT_polycystin PLAT/LH2 domain of polycystin-1 like proteins. Polycystins are a large family of membrane proteins composed of multiple domains, present in fish, invertebrates, mammals, and humans that are widely expressed in various cell types and whose biological functions remain poorly defined. In human, mutations in polycystin-1 (PKD1) and polycystin-2 (PKD2) have been shown to be the cause for autosomal dominant polycystic kidney disease (ADPKD). The generally proposed function of PLAT/LH2 domains is to mediate interaction with lipids or membrane bound proteins.
Probab=98.31 E-value=2.9e-06 Score=81.49 Aligned_cols=84 Identities=17% Similarity=0.350 Sum_probs=64.3
Q ss_pred CcEEEEEEeccCC-CCCcccCcc-ccccccccccceEEEEEEeccCCCCceeEEEEEeCC---CCceeeeeEEEeecCCC
Q 002672 97 KSLQLELVSAKDE-NKPTISGNA-KIKGVVVKDCEVQYEAEFQVPVDFGEIGAILVVNEH---ALEMYLKDIVLDGLPSG 171 (894)
Q Consensus 97 ~~v~l~Lvs~~~~-~~~~l~~~~-~~~~~~~~~~~~~y~v~f~~~~~~G~pgai~v~n~~---~~e~~l~~i~l~~~p~g 171 (894)
-+|+|+|+|+..+ ++..|.... ..| ..|+. ++|.+. .+.++|++-.|+|..+. ...|||++|+|.+...|
T Consensus 19 a~V~i~L~G~~g~s~~~~L~~~~~~~F--~rG~~-~~f~i~--~~~dlG~l~~i~l~hd~~g~~~~W~l~~V~V~~~~t~ 93 (120)
T cd01752 19 AKVTITLYGAEGESEPHHLRDPEKPIF--ERGSV-DSFLLT--TPFPLGELQSIRLWHDNSGLSPSWYLSRVIVRDLQTG 93 (120)
T ss_pred cEEEEEEEeCCCCcccEEcCCCCccce--eCCCe-eEEEec--CccCCCCccEEEEEECCCCCCCCeEEEEEEEEECCCC
Confidence 3599999998865 333555432 345 55665 577766 67899999999998776 47999999999864456
Q ss_pred -eEEEecCCCccCCC
Q 002672 172 -LVTITCESWVQPNT 185 (894)
Q Consensus 172 -~~~F~c~sWv~~~~ 185 (894)
.+.||||+|+...+
T Consensus 94 ~~~~F~~~rWl~~~~ 108 (120)
T cd01752 94 KKWFFLCNDWLSVEE 108 (120)
T ss_pred cEEEEEeCcEECCcC
Confidence 89999999998775
No 13
>cd01754 PLAT_plant_stress PLAT/LH2 domain of plant-specific single domain protein family with unknown function. Many of its members are stress induced. In general, PLAT/LH2 consists of an eight stranded beta-barrel and it's proposed function is to mediate interaction with lipids or membrane bound proteins.
Probab=98.31 E-value=3.1e-06 Score=82.75 Aligned_cols=84 Identities=7% Similarity=0.068 Sum_probs=63.7
Q ss_pred CcEEEEEEeccCCC-CCcc-cCcc-------ccccccccccceEEEEEEeccCCCCceeEEEEEeCC---CCceeeeeEE
Q 002672 97 KSLQLELVSAKDEN-KPTI-SGNA-------KIKGVVVKDCEVQYEAEFQVPVDFGEIGAILVVNEH---ALEMYLKDIV 164 (894)
Q Consensus 97 ~~v~l~Lvs~~~~~-~~~l-~~~~-------~~~~~~~~~~~~~y~v~f~~~~~~G~pgai~v~n~~---~~e~~l~~i~ 164 (894)
.+|+|+|++++.+. +..+ ++|. ..| ..|+. +.|.|+ .+.++|++-.|+|.... ...|||..|+
T Consensus 19 anV~i~l~G~~G~s~~~~l~~~~~~l~~~~~~~F--erG~~-d~F~v~--~~~~lG~l~~irI~HDn~G~~p~W~l~~V~ 93 (129)
T cd01754 19 SRISLQIYDADGPGLRIANLEAWGGLMGAGHDYF--ERGNL-DRFSGR--GPCLPSPPCWMNLTSDGTGNHPGWYVNYVE 93 (129)
T ss_pred ceEEEEEEeCCCCcccEEcccccccccccccccc--cCCCc-cEEEEE--eccCCCCeEEEEEEECCCCCCCCcccCEEE
Confidence 35999999988542 2233 2331 345 66777 689988 67889999999999876 4799999999
Q ss_pred EeecCC---C-eEEEecCCCccCCC
Q 002672 165 LDGLPS---G-LVTITCESWVQPNT 185 (894)
Q Consensus 165 l~~~p~---g-~~~F~c~sWv~~~~ 185 (894)
|++... + .++||||+|+...+
T Consensus 94 V~d~~~~~~~~~~~F~c~rWLa~d~ 118 (129)
T cd01754 94 VTQAGQHAPCMQHLFAVEQWLATDE 118 (129)
T ss_pred EEeCCCCCcCcEEEEEecEeccCCC
Confidence 987542 3 79999999998765
No 14
>cd01757 PLAT_RAB6IP1 PLAT/LH2 domain present in RAB6 interacting protein 1 (Rab6IP1)_like family. PLAT/LH2 domains consists of an eight stranded beta-barrel. In RabIP1 this domain may participate in lipid-mediated modulation of Rab6IP1's function via it's generally proposed function of mediating interaction with lipids or membrane bound proteins.
Probab=98.21 E-value=8.9e-06 Score=77.97 Aligned_cols=75 Identities=9% Similarity=0.236 Sum_probs=56.8
Q ss_pred CcEEEEEEeccCC-CCCcccCccccccccccccceEEEEEEeccCCCCceeEEEEEeCC---CCceeeeeEEEeecCCC-
Q 002672 97 KSLQLELVSAKDE-NKPTISGNAKIKGVVVKDCEVQYEAEFQVPVDFGEIGAILVVNEH---ALEMYLKDIVLDGLPSG- 171 (894)
Q Consensus 97 ~~v~l~Lvs~~~~-~~~~l~~~~~~~~~~~~~~~~~y~v~f~~~~~~G~pgai~v~n~~---~~e~~l~~i~l~~~p~g- 171 (894)
.+|+|+|++++.+ ++..|++. ...|.++ +.++|++-.|+|..+. ...|||+.|+|++.+.|
T Consensus 20 anV~i~L~G~~g~s~~~~L~~~-----------~f~~~v~---~~~LG~L~~irIwHDnsG~~~~Wfl~~V~V~d~~t~~ 85 (114)
T cd01757 20 ANPWICVSGELGETPPLQIPKN-----------SLEMTFD---CQNLGKLTTVQIGHDNSGLLAKWLVEYVMVRNEITGH 85 (114)
T ss_pred ceEEEEEEEcCCCcCCEEecCC-----------ceEEEEe---cCCcCCcEEEEEEECCCCCCCCeeeeEEEEEeCCCCC
Confidence 3599999998864 33344311 1234433 3899999999999977 47999999999987767
Q ss_pred eEEEecCCCccCCC
Q 002672 172 LVTITCESWVQPNT 185 (894)
Q Consensus 172 ~~~F~c~sWv~~~~ 185 (894)
.++||||+|+...+
T Consensus 86 ~~~FpC~rWLa~~~ 99 (114)
T cd01757 86 TYKFPCGRWLGEGV 99 (114)
T ss_pred EEEEecCceecCCC
Confidence 89999999998765
No 15
>cd01755 PLAT_lipase PLAT/ LH2 domain present in connection with a lipase domain. This family contains two major subgroups, the lipoprotein lipase (LPL) and the pancreatic triglyceride lipase. LPL is a key enzyme in catabolism of plasma lipoprotein triglycerides (TGs). The central role of triglyceride lipases is in energy production. In general, PLAT/LH2 domain's proposed function is to mediate interaction with lipids or membrane bound proteins.
Probab=65.57 E-value=50 Score=32.01 Aligned_cols=75 Identities=15% Similarity=0.147 Sum_probs=50.5
Q ss_pred cEEEEEEeccCCCCC-cccCccccccccccccceEEEEEEeccCCCCceeEEEEEeCCC----------CceeeeeEEEe
Q 002672 98 SLQLELVSAKDENKP-TISGNAKIKGVVVKDCEVQYEAEFQVPVDFGEIGAILVVNEHA----------LEMYLKDIVLD 166 (894)
Q Consensus 98 ~v~l~Lvs~~~~~~~-~l~~~~~~~~~~~~~~~~~y~v~f~~~~~~G~pgai~v~n~~~----------~e~~l~~i~l~ 166 (894)
.|+|.|.|+..+... .|.. ..+ ..|. .|+.-+..+.++|+.-.|.++-+.. ..||++.|+|+
T Consensus 20 ~v~v~L~G~~g~s~~~~l~~--~~~--~~g~---~~sfli~t~~~lG~l~~v~~~~dn~~~~~~~~~~~p~~~~~~I~Vq 92 (120)
T cd01755 20 TFTVSLYGTKGETEQLPIVL--GEL--KPNK---TYSFLIDTEVDIGDLLKVKFKWENNVINSNSGETLPKLGARKIRVK 92 (120)
T ss_pred cEEEEEEcCCCCcccEEEeC--Ccc--cCCC---EEEEEEEcCCCccceEEEEEEEcCCCcccccccCCCcEEEEEEEEE
Confidence 588999988755332 3321 112 2233 4544444799999999999986553 38999999998
Q ss_pred ecCCCeEEEecCC
Q 002672 167 GLPSGLVTITCES 179 (894)
Q Consensus 167 ~~p~g~~~F~c~s 179 (894)
+...+.-..-|.+
T Consensus 93 ~get~~~~~FC~~ 105 (120)
T cd01755 93 SGETQKKFTFCSQ 105 (120)
T ss_pred ECCCCCEEEEECC
Confidence 7777755556776
No 16
>KOG2080 consensus Uncharacterized conserved protein, contains DENN and RUN domains [Signal transduction mechanisms]
Probab=37.03 E-value=16 Score=45.74 Aligned_cols=50 Identities=12% Similarity=0.410 Sum_probs=36.2
Q ss_pred EEEeccCCCCceeEEEEEeCC---CCceeeeeEEEeecCCC-eEEEecCCCccCC
Q 002672 134 AEFQVPVDFGEIGAILVVNEH---ALEMYLKDIVLDGLPSG-LVTITCESWVQPN 184 (894)
Q Consensus 134 v~f~~~~~~G~pgai~v~n~~---~~e~~l~~i~l~~~p~g-~~~F~c~sWv~~~ 184 (894)
.+|+. .++|..--++|-... ...||++.|.|..--.| +|-|||++|.-+.
T Consensus 1015 f~F~~-kNLG~LtT~rIGHdnS~~~~kW~vEyV~vRNEiTG~TYKFPCGrw~G~g 1068 (1295)
T KOG2080|consen 1015 FKFDH-KNLGILSTLRIGHQQSEKPVQWFLEYVLVRNEITGQTYKFPCGRWFGNG 1068 (1295)
T ss_pred eEEec-cccceeeeEEecccCCCcchHHHHHHhhhhceeccceeccccccccCCc
Confidence 34433 689998888886544 36899999877532256 9999999997653
No 17
>cd01758 PLAT_LPL PLAT/ LH2 domain present in lipoprotein lipase (LPL). LPL is a key enzyme in catabolism of plasma lipoprotein triglycerides (TGs) and has therefeore has a profound influence on triglyceride and high-density lipoprotein (HDL) cholesterol levels in the blood. In general, PLAT/LH2 domain's proposed function is to mediate interaction with lipids or membrane bound proteins.
Probab=26.14 E-value=5.1e+02 Score=25.97 Aligned_cols=76 Identities=8% Similarity=0.085 Sum_probs=45.0
Q ss_pred cEEEEEEeccCCCCC-cccCccccccccccccceEEEEEEeccCCCCceeEEEE-EeCC---C-----------------
Q 002672 98 SLQLELVSAKDENKP-TISGNAKIKGVVVKDCEVQYEAEFQVPVDFGEIGAILV-VNEH---A----------------- 155 (894)
Q Consensus 98 ~v~l~Lvs~~~~~~~-~l~~~~~~~~~~~~~~~~~y~v~f~~~~~~G~pgai~v-~n~~---~----------------- 155 (894)
.|+|.|.|+..+... .|.. ...+ ..| .+|+.-+..+.++|+.-.|.+ .+++ .
T Consensus 21 ~v~i~L~G~~g~S~~~~l~~-~~~~--~~G---~t~sfLi~t~~dlG~L~~vk~~W~~n~~~~~sW~~~~~~~~~~~~~~ 94 (137)
T cd01758 21 TFTISLYGTLGESENLPLTL-PEGI--TGN---KTNSFLITTEKDIGDLLMLKLKWEGSSLWSNSWWTVQTIIPWSGWWR 94 (137)
T ss_pred eEEEEEEcCCCcccCEEEec-Cccc--CCC---CeEEEEEECCCCcCCEEEEEEEEeCCCCCChhhhccccccccccccC
Confidence 588999988765332 3331 1111 123 345545558999999999999 5433 1
Q ss_pred -CceeeeeEEEeecCCCeEEEecCC
Q 002672 156 -LEMYLKDIVLDGLPSGLVTITCES 179 (894)
Q Consensus 156 -~e~~l~~i~l~~~p~g~~~F~c~s 179 (894)
...+++.|+|+.-..+...--|.+
T Consensus 95 ~p~l~~~~I~Vk~GEtq~~~~FC~~ 119 (137)
T cd01758 95 GSGLTIRKIRVKAGETQKKMTFCAE 119 (137)
T ss_pred CCeEEEEEEEEEeCCCccEEEECCC
Confidence 233477888874445544444766
No 18
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=23.94 E-value=2.8e+02 Score=33.01 Aligned_cols=109 Identities=26% Similarity=0.317 Sum_probs=74.5
Q ss_pred hHHHHHHhccCCCcChhhHhcchhhhhhhhchHHH--------------HHcccCCCcccccccccchHHHHH--HHHHH
Q 002672 560 EPYAIAAHRQLSAMHPINRLLKPHFRYTMEINSLA--------------RQSLINAGGVIESTFLPGKYSMLL--SSIIY 623 (894)
Q Consensus 560 EpfiIAt~RqLs~~HPI~kLL~PHfr~Tl~IN~lA--------------R~~LI~~gGiie~~~~~G~~~~el--ss~~Y 623 (894)
+-+.+|..+|=|..-=+..+|.|--..++.||..= -..=|.+=|++.-.-+|+.|.-|| ++.-|
T Consensus 91 ~~L~~A~q~qKPds~elad~LkPI~e~i~eI~~fkE~nRkS~~FNhLsav~e~i~algWVav~~tP~p~vke~~daa~FY 170 (480)
T KOG2675|consen 91 AFLWVASQKQKPDSNELADLLKPINEEIGEINNFKEKNRKSPFFNHLSAVSESIPALGWVAVKPTPAPYVKEFKDAAQFY 170 (480)
T ss_pred HHHHHHHhccCCChHHHHHHhhhHHHhhhHHhhhhhcccCchHHHHHHHHHhhcccceeEecCCCCchHHHHHHHHHHHH
Confidence 45667888888888889999999999999998742 233355567776666688876554 33334
Q ss_pred hccCCCCCCCCchHHHh-cCCCCCCCCCCCcccccccCCccchhhHHHHHHHHHHHhhcccccccccccccCCHHHHHHH
Q 002672 624 DKQWRFDHQALPQDLIS-RGMAAKDPSSPHGLKLTIEDYPFAQDGLDLWDIIKQWVTDYVSHYYPDPSLVESDEELQAWW 702 (894)
Q Consensus 624 k~~w~f~~~~lP~DL~~-RG~~~~D~~~phgl~l~l~dYpYrdDGL~IW~AI~~~V~~yv~~YY~~D~~V~~D~ELQaW~ 702 (894)
-+ .-|+. ||- | -.-+ +||+.|+++| .|||+++
T Consensus 171 ~N----------rvLkEyk~~---D-------------------~~hv-----eWvKa~l~l~----------~eL~~YV 203 (480)
T KOG2675|consen 171 TN----------RVLKEYKEK---D-------------------PRHV-----EWVKAYLALF----------LELQAYV 203 (480)
T ss_pred HH----------HHHHHhccC---C-------------------hhHH-----HHHHHHHHHH----------HHHHHHH
Confidence 33 11111 232 1 1112 6999999998 6899999
Q ss_pred HHHHhccCCCCCC
Q 002672 703 TEIRTVGHGDKQD 715 (894)
Q Consensus 703 ~Ei~~~G~~d~kd 715 (894)
+|-.+-|....++
T Consensus 204 k~hhtTGl~W~~~ 216 (480)
T KOG2675|consen 204 KEHHTTGLVWNKD 216 (480)
T ss_pred HHhccccceecCC
Confidence 9999888766555
No 19
>PF10474 DUF2451: Protein of unknown function C-terminus (DUF2451); InterPro: IPR019514 This protein is found in eukaryotes but its function is not known. The N-terminal domain of some members is PF10475 from PFAM (DUF2450).
Probab=23.57 E-value=44 Score=36.28 Aligned_cols=24 Identities=33% Similarity=0.904 Sum_probs=20.2
Q ss_pred HHHHhhcccccccccccccCCHHHHHHHHH
Q 002672 675 KQWVTDYVSHYYPDPSLVESDEELQAWWTE 704 (894)
Q Consensus 675 ~~~V~~yv~~YY~~D~~V~~D~ELQaW~~E 704 (894)
.+||..||+.|| ..+.|+..|+++
T Consensus 178 ~~~Ve~YIKAyY------l~e~e~~~W~~~ 201 (234)
T PF10474_consen 178 REYVENYIKAYY------LPEEELEEWIRT 201 (234)
T ss_pred HHHHHHHHHHHc------CCHHHHHHHHHh
Confidence 479999999999 345699999986
No 20
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=22.91 E-value=1.2e+02 Score=23.53 Aligned_cols=31 Identities=23% Similarity=0.467 Sum_probs=20.8
Q ss_pred CCHHHHHHHHHHHhccCCCCCCCCCCCCCCChhHHHHHHh
Q 002672 694 SDEELQAWWTEIRTVGHGDKQDETWWPVLNSPKDLIDTIT 733 (894)
Q Consensus 694 ~D~ELQaW~~Ei~~~G~~d~kd~p~~P~l~T~~eLi~~lT 733 (894)
.|.+|+.|..+ ||-... +...|+++|++.+-
T Consensus 5 s~~~L~~wL~~-----~gi~~~----~~~~~rd~Ll~~~k 35 (38)
T PF10281_consen 5 SDSDLKSWLKS-----HGIPVP----KSAKTRDELLKLAK 35 (38)
T ss_pred CHHHHHHHHHH-----cCCCCC----CCCCCHHHHHHHHH
Confidence 46899999986 332222 12269999998763
No 21
>PF06232 ATS3: Embryo-specific protein 3, (ATS3); InterPro: IPR010417 This is a family of plant seed-specific proteins identified in Arabidopsis thaliana (Mouse-ear cress). ATS3 is expressed in a pattern similar to the Arabidopsis seed storage protein genes [].
Probab=22.42 E-value=2.9e+02 Score=27.62 Aligned_cols=57 Identities=9% Similarity=-0.052 Sum_probs=41.6
Q ss_pred cccccceEEEEEEeccCCCCceeEEEEEeCCCCceeeeeEEEeecCCCeEEEecCCCccCC
Q 002672 124 VVKDCEVQYEAEFQVPVDFGEIGAILVVNEHALEMYLKDIVLDGLPSGLVTITCESWVQPN 184 (894)
Q Consensus 124 ~~~~~~~~y~v~f~~~~~~G~pgai~v~n~~~~e~~l~~i~l~~~p~g~~~F~c~sWv~~~ 184 (894)
...+. ++|+|+= .=++.+=-+.++....+.|+.++|+|.+....+++|.-|.||-..
T Consensus 61 ErCs~-DtF~v~G---~C~~~IC~lyL~r~G~dGW~Pe~V~Iy~~~~~~~~F~~~~~lp~~ 117 (125)
T PF06232_consen 61 ERCST-DTFQVTG---PCLYQICYLYLYRSGSDGWKPEWVQIYGSGSKPVTFYFNTFLPNG 117 (125)
T ss_pred hcCCc-ceeEeec---ccCCcccEEEEEEccCCCCEeCeEEEEEcCCCCeEEECCCcCCCC
Confidence 34444 5888872 234467777777777889999999997533348999999999763
No 22
>PF09545 RE_AccI: AccI restriction endonuclease; InterPro: IPR019054 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry includes the restriction endonuclease AccI, which recognises and cleaves the double-stranded sequence GT^MKAC.
Probab=21.80 E-value=9.4e+02 Score=27.49 Aligned_cols=43 Identities=14% Similarity=0.353 Sum_probs=37.7
Q ss_pred HHHHHHHHHHhhcccccc-cccccccCCHHHHHHHHHHHhccCC
Q 002672 669 DLWDIIKQWVTDYVSHYY-PDPSLVESDEELQAWWTEIRTVGHG 711 (894)
Q Consensus 669 ~IW~AI~~~V~~yv~~YY-~~D~~V~~D~ELQaW~~Ei~~~G~~ 711 (894)
.|-+||.+.-.+|+..-| +|++.+.+|.+...+..+...+|.+
T Consensus 51 ~V~~AINeT~~~fvAV~YG~S~~~~agd~gFe~fyq~~Q~elnT 94 (366)
T PF09545_consen 51 RVLRAINETSSEFVAVRYGPSDAIPAGDEGFELFYQRLQRELNT 94 (366)
T ss_pred HHHHHHhhccccEEEEEecCCCCCCcCchhHHHHHHHHHHHhhc
Confidence 677999999999999877 5899999999999999999986543
No 23
>PF12588 PSDC: Phophatidylserine decarboxylase ; InterPro: IPR022237 This domain family is found in bacteria and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF02666 from PFAM. Phosphatidylserine decarboxylase (PSD) is an important enzyme in the synthesis of phosphatidylethanolamine in both prokaryotes and eukaryotes.
Probab=20.26 E-value=1.4e+02 Score=30.25 Aligned_cols=127 Identities=17% Similarity=0.161 Sum_probs=71.9
Q ss_pred ccccCCHHHHHHHHHHHhccCCCCCCCCCCC-CCCChhHHHHHHhhheeccccccccccccccccccccCCccccccCCC
Q 002672 690 SLVESDEELQAWWTEIRTVGHGDKQDETWWP-VLNSPKDLIDTITSIVWVASGLHAAVNFGQYEYAAYFPNRPTIARANM 768 (894)
Q Consensus 690 ~~V~~D~ELQaW~~Ei~~~G~~d~kd~p~~P-~l~T~~eLi~~lT~iI~~aSaqHAAVNfgQy~y~gfvPN~P~~~r~p~ 768 (894)
+-|.+|++|..+.+++.++ .....+..|.| .+++.++|..++-.||-+|=.... .-.+-..-|+.=|. .+-.||
T Consensus 10 ~lIe~dp~l~ml~~~Mf~q-~~~~~~p~g~~~~i~~~~~mL~~ln~i~t~AP~~~~--~~~~~glvG~P~na--iLdwpM 84 (141)
T PF12588_consen 10 DLIESDPRLYMLFTQMFDQ-PPYNADPTGNPPQIRDYDEMLQLLNHIMTTAPEFSD--ANEPVGLVGFPMNA--ILDWPM 84 (141)
T ss_pred HHHhcCHHHHHHHHHHHhC-cccccCCCCCccccccHHHHHHHHHHHHhhCCcccc--cCCCCCccccChHH--HHHhhc
Confidence 3578999999999999987 32333445677 899999999999999955432222 00112334443333 233455
Q ss_pred CCCCCChhHHHHhhhCcHHHHHhcCCChHHHHHHHHH--HHhhcCCCCCCccccCCCCCCCCCcHHHHHHH
Q 002672 769 PNEDPSDDEWQIFFERPEAALLTTFPNQRQATAVISV--LDVLSAHSPDEDYLGKYMEPAWGEDKIIKGAF 837 (894)
Q Consensus 769 P~~~~~~~e~~~l~~~~e~~~L~tLP~~~qa~~~m~~--~~~LS~~~~de~yLG~~~~~~~~~d~~~~~a~ 837 (894)
-|+. .|.-|+ -|...+.+..+.- ...|++..+- ..|...+...|++. .+++.+
T Consensus 85 ~T~s----G~a~F~----------~p~vN~~lK~ILn~W~~fL~sp~S~-~vL~~~~~~GWfs~-~A~~~l 139 (141)
T PF12588_consen 85 GTPS----GYAFFL----------DPDVNAQLKKILNEWGEFLSSPASR-SVLNTDPPNGWFSP-EALKEL 139 (141)
T ss_pred cChH----HHHHHc----------CHHHHHHHHHHHHHHHHHcCChhhh-ccccCCCCCCccCH-HHHHHh
Confidence 5542 233332 2233444444432 3466655443 34665533479994 444443
Done!