Query 002673
Match_columns 894
No_of_seqs 559 out of 5473
Neff 8.1
Searched_HMMs 29240
Date Tue Mar 26 21:42:39 2013
Command hhsearch -i /local_scratch/syshi/lefta3m2/002673.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H2_72-76//hhsearch_pdb/002673hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4aoj_A High affinity nerve gro 1.0 1 1 392.9 21.2 261 607-886 41-320 (329)
2 4asz_A BDNF/NT-3 growth factor 1.0 1 1 390.2 19.7 261 607-886 13-290 (299)
3 4gt4_A Tyrosine-protein kinase 1.0 1 1 384.5 20.8 259 607-884 26-305 (308)
4 4fie_A Serine/threonine-protei 1.0 1 1 380.7 22.0 256 606-884 150-408 (423)
5 4fih_A Serine/threonine-protei 1.0 1 1 379.6 20.3 255 607-884 74-331 (346)
6 4b9d_A Serine/threonine-protei 1.0 1 1 378.5 19.3 254 607-882 24-282 (350)
7 3omv_A RAF proto-oncogene seri 1.0 1 1 377.5 21.3 261 606-886 35-301 (307)
8 4ase_A Vascular endothelial gr 1.0 1 1 375.3 20.6 271 598-886 55-348 (353)
9 4g3f_A NF-kappa-beta-inducing 1.0 1 1 370.1 20.4 253 606-884 57-315 (336)
10 3hmm_A TGF-beta receptor type- 1.0 1 1 367.8 20.0 270 607-887 3-299 (303)
No 1
>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}
Probab=1.00 E-value=1 Score=392.86 Aligned_cols=261 Identities=26% Similarity=0.435 Sum_probs=216.2
Q ss_pred CCCCCCCEEEECCCEEEEEEEEC------CCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEECCEEEECCEEEE
Q ss_conf 59876544710283899999984------898489999748512659999999999994599824553224310463889
Q 002673 607 DNFSQANIIGCGGFGLVYKATLA------NGTTLAIKKLSGDLGLMEREFKAEVEALSTAQHKNLVSLQGYCVHQGFRLL 680 (894)
Q Consensus 607 ~~~~~~~~LG~G~fg~Vy~a~~~------~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~Hpniv~l~g~~~~~~~~~l 680 (894)
++|...+.||+|+||.||+|.+. ++..||||++........++|.+|+++|+.++|||||+++|+|.+....++
T Consensus 41 ~d~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~l 120 (329)
T 4aoj_A 41 RDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRFFGVCTEGRPLLM 120 (329)
T ss_dssp GGEEEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEE
T ss_pred HHEEEEEEECCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEE
T ss_conf 99288779714778489989987866577896999999775797999999999999985899899969899998998999
Q ss_pred EEEECCCCCHHHHHHHHCC-----------CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCE
Q ss_conf 9984469998899844148-----------98875799999999999999999885069983641899998577899859
Q 002673 681 IYSYMENGSLDYWLHEKAD-----------GASQLDWLTRLKIARGTSCGLAYMHQICEPHIVHRDIKSSNILLDDQFEA 749 (894)
Q Consensus 681 V~E~~~~gsL~~~l~~~~~-----------~~~~l~~~~~~~i~~~Ia~aL~yLHs~~~~~ivH~DLkp~NILl~~~~~v 749 (894)
|||||++|+|.++++.... ....++|..++.|+.||+.||.|||+ ++|+||||||+|||+++++.+
T Consensus 121 V~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~---~~iiHRDLKp~NILl~~~~~~ 197 (329)
T 4aoj_A 121 VFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAG---LHFVHRDLATRNCLVGQGLVV 197 (329)
T ss_dssp EEECCTTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEEETTTEE
T ss_pred EEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHC---CCEECCCCCHHHEEECCCCCE
T ss_conf 99827999399999860754100122112457889999999999999999999840---884226666764898899968
Q ss_pred EEEECCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHC-CCCCCCCCCCCHHHHHHHHHH
Q ss_conf 9997345332378887-43112455678668224367677862118999999999991-999999889301256999999
Q 002673 750 HLADFGLSRLILPYQT-HVTTELVGTLGYIPPEYGQAWVATLRGDMYSFGVVMLELLT-GKRPVDVLKPKMSRELVGWVL 827 (894)
Q Consensus 750 kL~DFGla~~~~~~~~-~~~~~~~gt~~y~APE~~~~~~~s~ksDVwSlGvil~ellt-G~~Pf~~~~~~~~~~~~~~~~ 827 (894)
||+|||+++....... .......||+.|||||++.+..|+.++|||||||++|||+| |+.||....... ....+.
T Consensus 198 Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~~sDvwS~Gvvl~Ellt~G~~Pf~~~~~~~---~~~~i~ 274 (329)
T 4aoj_A 198 KIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQPWYQLSNTE---AIDCIT 274 (329)
T ss_dssp EECCCC----------------CCCCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSSCHHH---HHHHHH
T ss_pred EECCCCCCEECCCCCCCEECCCCCCCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHH---HHHHHH
T ss_conf 97666033365678753004764556566582654479999663001057899999828999999989999---999998
Q ss_pred HHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf 88414987754452003999969999999999871115999999999999999820013
Q 002673 828 KMRSEGKQDQVFDPILRGKGFDEEMLQVLDVACMCVSQNPFKRPTVKEVVEWLNNVGAN 886 (894)
Q Consensus 828 ~~~~~~~~~~~~d~~l~~~~~~~~~~~l~~li~~Cl~~dP~~RPs~~eil~~L~~i~~~ 886 (894)
.+..... ...++ ..+.+++.+||+.||++||||++|+++|+.+...
T Consensus 275 ----~g~~~~~------p~~~~---~~~~~li~~cl~~dP~~RPs~~ei~~~L~~l~~~ 320 (329)
T 4aoj_A 275 ----QGRELER------PRACP---PEVYAIMRGCWQREPQQRHSIKDVHARLQALAQA 320 (329)
T ss_dssp ----HTCCCCC------CTTCC---HHHHHHHHHHCCSSTTTSCCHHHHHHHHHHHHHS
T ss_pred ----CCCCCCC------CCCCC---HHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHC
T ss_conf ----0898998------64463---9999999997475965792999999999987458
No 2
>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*
Probab=1.00 E-value=1 Score=390.23 Aligned_cols=261 Identities=26% Similarity=0.467 Sum_probs=215.8
Q ss_pred CCCCCCCEEEECCCEEEEEEEEC------CCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEECCEEEECCEEEE
Q ss_conf 59876544710283899999984------898489999748512659999999999994599824553224310463889
Q 002673 607 DNFSQANIIGCGGFGLVYKATLA------NGTTLAIKKLSGDLGLMEREFKAEVEALSTAQHKNLVSLQGYCVHQGFRLL 680 (894)
Q Consensus 607 ~~~~~~~~LG~G~fg~Vy~a~~~------~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~Hpniv~l~g~~~~~~~~~l 680 (894)
++|...+.||+|+||.||+|.+. ++..||||++........++|.+|+++|++++|||||+++|+|.+.+..++
T Consensus 13 ~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~l 92 (299)
T 4asz_A 13 HNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVEGDPLIM 92 (299)
T ss_dssp GGEEEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEE
T ss_pred HHEEEEEEEEECCCCEEEEEEECCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEE
T ss_conf 89298249820788299999987766677887999999677785899999999999985899888628799956998999
Q ss_pred EEEECCCCCHHHHHHHHC---------CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEE
Q ss_conf 998446999889984414---------89887579999999999999999988506998364189999857789985999
Q 002673 681 IYSYMENGSLDYWLHEKA---------DGASQLDWLTRLKIARGTSCGLAYMHQICEPHIVHRDIKSSNILLDDQFEAHL 751 (894)
Q Consensus 681 V~E~~~~gsL~~~l~~~~---------~~~~~l~~~~~~~i~~~Ia~aL~yLHs~~~~~ivH~DLkp~NILl~~~~~vkL 751 (894)
|||||++|+|.++++... .....++|..+..++.||+.||.|||+ ++|+||||||+|||+++++.+||
T Consensus 93 V~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~---~~iiHRDlKp~NILl~~~~~~Ki 169 (299)
T 4asz_A 93 VFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLAS---QHFVHRDLATRNCLVGENLLVKI 169 (299)
T ss_dssp EEECCTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEECGGGCEEE
T ss_pred EEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH---CCCCCCCCCHHHEEECCCCCEEE
T ss_conf 998589996899998608642111235777889999999999999999999975---99046765776389879986898
Q ss_pred EECCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHC-CCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 973453323788874-3112455678668224367677862118999999999991-99999988930125699999988
Q 002673 752 ADFGLSRLILPYQTH-VTTELVGTLGYIPPEYGQAWVATLRGDMYSFGVVMLELLT-GKRPVDVLKPKMSRELVGWVLKM 829 (894)
Q Consensus 752 ~DFGla~~~~~~~~~-~~~~~~gt~~y~APE~~~~~~~s~ksDVwSlGvil~ellt-G~~Pf~~~~~~~~~~~~~~~~~~ 829 (894)
+|||+++........ ......||+.|||||++.+..|+.++|||||||++|||+| |+.||...... +....+.
T Consensus 170 ~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~k~DVwS~Gvvl~Ellt~G~~Pf~~~~~~---~~~~~i~-- 244 (299)
T 4asz_A 170 GDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLSNN---EVIECIT-- 244 (299)
T ss_dssp CCCSCHHHHTGGGCEEETTTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHH---HHHHHHH--
T ss_pred CCCCCCEECCCCCCEEECCCEECCHHHCCHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHH---HHHHHHH--
T ss_conf 87300100678874166475134701038898707999703667788999999980899999998999---9999998--
Q ss_pred HHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf 414987754452003999969999999999871115999999999999999820013
Q 002673 830 RSEGKQDQVFDPILRGKGFDEEMLQVLDVACMCVSQNPFKRPTVKEVVEWLNNVGAN 886 (894)
Q Consensus 830 ~~~~~~~~~~d~~l~~~~~~~~~~~l~~li~~Cl~~dP~~RPs~~eil~~L~~i~~~ 886 (894)
.+..... ...++ ..+.+++.+||+.||++||||++++++|+++...
T Consensus 245 --~~~~~~~------p~~~~---~~~~~li~~cl~~dP~~RPs~~~i~~~L~~~~~~ 290 (299)
T 4asz_A 245 --QGRVLQR------PRTCP---QEVYELMLGCWQREPHMRKNIKGIHTLLQNLAKA 290 (299)
T ss_dssp --HTCCCCC------CTTCC---HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred --CCCCCCC------CCCCH---HHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHC
T ss_conf --0898899------74143---9999999997687966892999999999877763
No 3
>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A
Probab=1.00 E-value=1 Score=384.47 Aligned_cols=259 Identities=24% Similarity=0.381 Sum_probs=211.0
Q ss_pred CCCCCCCEEEECCCEEEEEEEEC------CCCEEEEEEECCCC-HHHHHHHHHHHHHHHHCCCCCEEEECCEEEECCEEE
Q ss_conf 59876544710283899999984------89848999974851-265999999999999459982455322431046388
Q 002673 607 DNFSQANIIGCGGFGLVYKATLA------NGTTLAIKKLSGDL-GLMEREFKAEVEALSTAQHKNLVSLQGYCVHQGFRL 679 (894)
Q Consensus 607 ~~~~~~~~LG~G~fg~Vy~a~~~------~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~Hpniv~l~g~~~~~~~~~ 679 (894)
++++..+.||+|+||.||+|.+. ++..||||++.... ....++|.+|+.++++++|||||+++|+|.+.+..+
T Consensus 26 ~~~~~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~~~~~~ 105 (308)
T 4gt4_A 26 SAVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVCLLGVVTKDQPLS 105 (308)
T ss_dssp GGEEEEEEEEECSSCEEEEEEEC-------CEEEEEEECCC-CCC-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCE
T ss_pred HHCEEEEEECCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCEEE
T ss_conf 88858669135888489999985776588886999999880149689999999999998589989877364998899889
Q ss_pred EEEEECCCCCHHHHHHHHCC------------CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCC
Q ss_conf 99984469998899844148------------988757999999999999999998850699836418999985778998
Q 002673 680 LIYSYMENGSLDYWLHEKAD------------GASQLDWLTRLKIARGTSCGLAYMHQICEPHIVHRDIKSSNILLDDQF 747 (894)
Q Consensus 680 lV~E~~~~gsL~~~l~~~~~------------~~~~l~~~~~~~i~~~Ia~aL~yLHs~~~~~ivH~DLkp~NILl~~~~ 747 (894)
+|||||++|+|.+++..... ....++|..++.|+.||+.||.|||+ ++|+||||||+|||+++++
T Consensus 106 lV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~---~~iiHRDLK~~NILl~~~~ 182 (308)
T 4gt4_A 106 MIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLSS---HHVVHKDLATRNVLVYDKL 182 (308)
T ss_dssp EEEECCSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEECGGG
T ss_pred EEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH---CCCCCCCCCCCCEEECCCC
T ss_conf 9998189994999998627654333322111124689999999999999999999986---8997787362306887999
Q ss_pred CEEEEECCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHC-CCCCCCCCCCCHHHHHHHH
Q ss_conf 599997345332378887-43112455678668224367677862118999999999991-9999998893012569999
Q 002673 748 EAHLADFGLSRLILPYQT-HVTTELVGTLGYIPPEYGQAWVATLRGDMYSFGVVMLELLT-GKRPVDVLKPKMSRELVGW 825 (894)
Q Consensus 748 ~vkL~DFGla~~~~~~~~-~~~~~~~gt~~y~APE~~~~~~~s~ksDVwSlGvil~ellt-G~~Pf~~~~~~~~~~~~~~ 825 (894)
.+||+|||+++....... .......||+.|||||++.+..|+.++|||||||++|||+| |..||...... ++...
T Consensus 183 ~~Ki~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~~s~ksDVwSfGvvl~El~t~g~~Pf~~~~~~---~~~~~ 259 (308)
T 4gt4_A 183 NVKISDLGLFREVYAADYYKLLGNSLLPIRWMAPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYSNQ---DVVEM 259 (308)
T ss_dssp CEEECCSCCBCGGGGGGCBCSSSSSCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTCCHH---HHHHH
T ss_pred CEEECCCCCCEECCCCCCEEEECCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHH---HHHHH
T ss_conf 789887602023367774047345125776569899827999963000157999999996899999998999---99999
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCC
Q ss_conf 99884149877544520039999699999999998711159999999999999998200
Q 002673 826 VLKMRSEGKQDQVFDPILRGKGFDEEMLQVLDVACMCVSQNPFKRPTVKEVVEWLNNVG 884 (894)
Q Consensus 826 ~~~~~~~~~~~~~~d~~l~~~~~~~~~~~l~~li~~Cl~~dP~~RPs~~eil~~L~~i~ 884 (894)
+. .+..... ...+ ...+.+++.+||+.||++||||.+|++.|+.+.
T Consensus 260 i~----~~~~~~~------p~~~---~~~~~~li~~C~~~dP~~RPs~~ei~~~L~a~~ 305 (308)
T 4gt4_A 260 IR----NRQVLPC------PDDC---PAWVYALMIECWNEFPSRRPRFKDIHSRLRAWG 305 (308)
T ss_dssp HH----TTCCCCC------CTTC---CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSC
T ss_pred HH----CCCCCCC------CCCC---HHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHCC
T ss_conf 98----1998999------6203---699999999975879657929999999998531
No 4
>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}
Probab=1.00 E-value=1 Score=380.71 Aligned_cols=256 Identities=21% Similarity=0.302 Sum_probs=211.4
Q ss_pred CCCCCCCCEEEECCCEEEEEEEE-CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEECCEEEECCEEEEEEEE
Q ss_conf 05987654471028389999998-48984899997485126599999999999945998245532243104638899984
Q 002673 606 TDNFSQANIIGCGGFGLVYKATL-ANGTTLAIKKLSGDLGLMEREFKAEVEALSTAQHKNLVSLQGYCVHQGFRLLIYSY 684 (894)
Q Consensus 606 ~~~~~~~~~LG~G~fg~Vy~a~~-~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~Hpniv~l~g~~~~~~~~~lV~E~ 684 (894)
.+.|+..+.||+|+||.||+|.. .+|+.||||++........+.+.+|+.+|+.++|||||++++++.+.+..|+||||
T Consensus 150 ~~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~iVmEy 229 (423)
T 4fie_A 150 RSYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEF 229 (423)
T ss_dssp GGTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTTCSSGGGHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred HHHCEEEEEECCCCCCEEEEEEECCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEEC
T ss_conf 68438616962481848999999999989999998625546899999999999857998987168999989999999969
Q ss_pred CCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEEECCCCCCCCCCC
Q ss_conf 46999889984414898875799999999999999999885069983641899998577899859999734533237888
Q 002673 685 MENGSLDYWLHEKADGASQLDWLTRLKIARGTSCGLAYMHQICEPHIVHRDIKSSNILLDDQFEAHLADFGLSRLILPYQ 764 (894)
Q Consensus 685 ~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~Ia~aL~yLHs~~~~~ivH~DLkp~NILl~~~~~vkL~DFGla~~~~~~~ 764 (894)
|++|+|.+++... .+++..+..++.||+.||.|||+ ++|+||||||+|||++.++.+||+|||+|+.+....
T Consensus 230 ~~gG~L~~~i~~~-----~l~e~~~~~~~~qil~aL~ylH~---~~IiHRDiKp~NILl~~~g~vKl~DFGla~~~~~~~ 301 (423)
T 4fie_A 230 LEGGALTDIVTHT-----RMNEEQIAAVCLAVLQALSVLHA---QGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEV 301 (423)
T ss_dssp CTTEEHHHHHHHS-----CCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSTTTEEECTTCCEEECCCTTCEECCSSC
T ss_pred CCCCCHHHHHHCC-----CCCHHHHHHHHHHHHHHHHHHHH---CCEECCCCCHHHEEECCCCCEEEECCCCCEECCCCC
T ss_conf 8998289887616-----98999999999999999999998---890446578777898589998980372654777887
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 74311245567866822436767786211899999999999199999988930125699999988414987754452003
Q 002673 765 THVTTELVGTLGYIPPEYGQAWVATLRGDMYSFGVVMLELLTGKRPVDVLKPKMSRELVGWVLKMRSEGKQDQVFDPILR 844 (894)
Q Consensus 765 ~~~~~~~~gt~~y~APE~~~~~~~s~ksDVwSlGvil~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~ 844 (894)
......+||+.|||||++.+..|+.++|||||||++|||++|+.||....... ....+. ... ....
T Consensus 302 -~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~---~~~~i~---~~~-~~~~------ 367 (423)
T 4fie_A 302 -PRRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLK---AMKMIR---DNL-PPRL------ 367 (423)
T ss_dssp -CCBCCCEECTTTCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHH---HHHHHH---HSC-CCCC------
T ss_pred -CCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHH---HHHHHH---CCC-CCCC------
T ss_conf -64346664747279999779999968999999999999997879989869999---999997---279-9887------
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH--HHHHCC
Q ss_conf 9999699999999998711159999999999999--998200
Q 002673 845 GKGFDEEMLQVLDVACMCVSQNPFKRPTVKEVVE--WLNNVG 884 (894)
Q Consensus 845 ~~~~~~~~~~l~~li~~Cl~~dP~~RPs~~eil~--~L~~i~ 884 (894)
.........+.+|+.+||+.||.+|||+.|+++ ||.+..
T Consensus 368 -~~~~~~s~~~~dli~~~L~~dP~~R~ta~ell~Hp~~~~~~ 408 (423)
T 4fie_A 368 -KNLHKVSPSLKGFLDRLLVRDPAQRATAAELLKHPFLAKAG 408 (423)
T ss_dssp -SCTTSSCHHHHHHHHHHSCSSTTTSCCHHHHTTCGGGGGCC
T ss_pred -CCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHCCHHHCCCC
T ss_conf -65012999999999998678956890999996098756899
No 5
>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*
Probab=1.00 E-value=1 Score=379.64 Aligned_cols=255 Identities=22% Similarity=0.311 Sum_probs=211.0
Q ss_pred CCCCCCCEEEECCCEEEEEEEE-CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEECCEEEECCEEEEEEEEC
Q ss_conf 5987654471028389999998-489848999974851265999999999999459982455322431046388999844
Q 002673 607 DNFSQANIIGCGGFGLVYKATL-ANGTTLAIKKLSGDLGLMEREFKAEVEALSTAQHKNLVSLQGYCVHQGFRLLIYSYM 685 (894)
Q Consensus 607 ~~~~~~~~LG~G~fg~Vy~a~~-~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~Hpniv~l~g~~~~~~~~~lV~E~~ 685 (894)
+.|+..+.||+|+||.||+|.. .+|+.||||++........+.+.+|+.+|+.++|||||++++++.+.+..|+||||+
T Consensus 74 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~ivmEy~ 153 (346)
T 4fih_A 74 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFL 153 (346)
T ss_dssp GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCSSGGGGHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEECCC
T ss_pred HHCEEEEEEECCCCEEEEEEEECCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEECC
T ss_conf 75387079602728299999998999899999985276568999999999998679989991999999899999999698
Q ss_pred CCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEEECCCCCCCCCCCC
Q ss_conf 69998899844148988757999999999999999998850699836418999985778998599997345332378887
Q 002673 686 ENGSLDYWLHEKADGASQLDWLTRLKIARGTSCGLAYMHQICEPHIVHRDIKSSNILLDDQFEAHLADFGLSRLILPYQT 765 (894)
Q Consensus 686 ~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~Ia~aL~yLHs~~~~~ivH~DLkp~NILl~~~~~vkL~DFGla~~~~~~~~ 765 (894)
++|+|.+++.. ..+++..+..++.||+.||.|||+ ++|+||||||+|||++.++.+||+|||+|+.+....
T Consensus 154 ~gg~L~~~l~~-----~~l~e~~~~~~~~qi~~aL~ylH~---~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~- 224 (346)
T 4fih_A 154 EGGALTDIVTH-----TRMNEEQIAAVCLAVLQALSVLHA---QGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEV- 224 (346)
T ss_dssp TTEEHHHHHHH-----SCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTCCEEECCCTTCEECCSSS-
T ss_pred CCCCHHHHHHC-----CCCCHHHHHHHHHHHHHHHHHHHH---CCCCCCCCCHHHEEECCCCCEEEECCCCCEECCCCC-
T ss_conf 99808999871-----898999999999999999999998---883556278899788799988990275753667887-
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 43112455678668224367677862118999999999991999999889301256999999884149877544520039
Q 002673 766 HVTTELVGTLGYIPPEYGQAWVATLRGDMYSFGVVMLELLTGKRPVDVLKPKMSRELVGWVLKMRSEGKQDQVFDPILRG 845 (894)
Q Consensus 766 ~~~~~~~gt~~y~APE~~~~~~~s~ksDVwSlGvil~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~ 845 (894)
......+||+.|||||++.+..|+.++||||+||++|||++|+.||...... .....+. . ......
T Consensus 225 ~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~---~~~~~i~---~-~~~~~~------- 290 (346)
T 4fih_A 225 PRRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPL---KAMKMIR---D-NLPPRL------- 290 (346)
T ss_dssp CCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHH---HHHHHHH---H-SSCCCC-------
T ss_pred CCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHH---HHHHHHH---C-CCCCCC-------
T ss_conf 7534656275827999977999996899999999999999787998985999---9999997---1-799988-------
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH--HHHHCC
Q ss_conf 999699999999998711159999999999999--998200
Q 002673 846 KGFDEEMLQVLDVACMCVSQNPFKRPTVKEVVE--WLNNVG 884 (894)
Q Consensus 846 ~~~~~~~~~l~~li~~Cl~~dP~~RPs~~eil~--~L~~i~ 884 (894)
.........+.+|+.+||+.||++|||+.|+++ |+.+..
T Consensus 291 ~~~~~~s~~~~dli~~~L~~dP~~R~ta~e~l~Hp~~~~~~ 331 (346)
T 4fih_A 291 KNLHKVSPSLKGFLDRLLVRDPAQRATAAELLKHPFLAKAG 331 (346)
T ss_dssp SCGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTTCGGGGGCC
T ss_pred CCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHCCHHHCCCC
T ss_conf 75022999999999998679956890999996098656899
No 6
>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*
Probab=1.00 E-value=1 Score=378.52 Aligned_cols=254 Identities=24% Similarity=0.361 Sum_probs=208.9
Q ss_pred CCCCCCCEEEECCCEEEEEEEE-CCCCEEEEEEECCCC--HHHHHHHHHHHHHHHHCCCCCEEEECCEEEECCEEEEEEE
Q ss_conf 5987654471028389999998-489848999974851--2659999999999994599824553224310463889998
Q 002673 607 DNFSQANIIGCGGFGLVYKATL-ANGTTLAIKKLSGDL--GLMEREFKAEVEALSTAQHKNLVSLQGYCVHQGFRLLIYS 683 (894)
Q Consensus 607 ~~~~~~~~LG~G~fg~Vy~a~~-~~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~Hpniv~l~g~~~~~~~~~lV~E 683 (894)
++|++.+.||+|+||.||+|+. .+++.||||++.... ....+.+.+|+.+++.++|||||++++++.+++..|+|||
T Consensus 24 e~Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~yiVmE 103 (350)
T 4b9d_A 24 EKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQYRESFEENGSLYIVMD 103 (350)
T ss_dssp CCEEEEEEC------CEEEEEETTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred CCEEEEEEEECCCCEEEEEEEECCCCCEEEEEEEEHHHCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEE
T ss_conf 25588479702779399999988999899999986587897999999999999987799898919999998999999994
Q ss_pred ECCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEEECCCCCCCCCC
Q ss_conf 44699988998441489887579999999999999999988506998364189999857789985999973453323788
Q 002673 684 YMENGSLDYWLHEKADGASQLDWLTRLKIARGTSCGLAYMHQICEPHIVHRDIKSSNILLDDQFEAHLADFGLSRLILPY 763 (894)
Q Consensus 684 ~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~Ia~aL~yLHs~~~~~ivH~DLkp~NILl~~~~~vkL~DFGla~~~~~~ 763 (894)
|+++|+|.+++.... ...+++..+..++.||+.||.|||+ ++|+||||||+|||++.++.+||+|||+++.....
T Consensus 104 y~~gg~L~~~i~~~~--~~~~~e~~~~~~~~qi~~aL~ylH~---~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~ 178 (350)
T 4b9d_A 104 YCEGGDLFKRINAQK--GVLFQEDQILDWFVQICLALKHVHD---RKILHRDIKSQNIFLTKDGTVQLGDFGIARVLNST 178 (350)
T ss_dssp CCTTCBHHHHHHHTT--TCCCCHHHHHHHHHHHHHHHHHHHH---TTCEETTCCGGGEEECTTCCEEECSTTEESCCCHH
T ss_pred CCCCCCHHHHHHHCC--CCCCCHHHHHHHHHHHHHHHHHHHH---CCEEECCCCHHHEEECCCCCEEECCCCCCEEECCC
T ss_conf 889983999999738--9999789999999999999999998---99151359789979878999897646521440688
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 87431124556786682243676778621189999999999919999998893012569999998841498775445200
Q 002673 764 QTHVTTELVGTLGYIPPEYGQAWVATLRGDMYSFGVVMLELLTGKRPVDVLKPKMSRELVGWVLKMRSEGKQDQVFDPIL 843 (894)
Q Consensus 764 ~~~~~~~~~gt~~y~APE~~~~~~~s~ksDVwSlGvil~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l 843 (894)
.......+||+.|||||++.+..|+.++||||+||++|||++|+.||...... .... .+.... ....
T Consensus 179 -~~~~~~~~GT~~YmAPE~l~~~~y~~~~DiwSlGvilyemltG~~PF~~~~~~---~~~~---~i~~~~-~~~~----- 245 (350)
T 4b9d_A 179 -VELARACIGTPYYLSPEICENKPYNNKSDIWALGCVLYELCTLKHAFEAGSMK---NLVL---KIISGS-FPPV----- 245 (350)
T ss_dssp -HHHHHHHHSCCTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHH---HHHH---HHHHTC-CCCC-----
T ss_pred -CCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHH---HHHH---HHHCCC-CCCC-----
T ss_conf -54101457883603999987999895999999999999999787998996999---9999---998089-9999-----
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH--HHHH
Q ss_conf 39999699999999998711159999999999999--9982
Q 002673 844 RGKGFDEEMLQVLDVACMCVSQNPFKRPTVKEVVE--WLNN 882 (894)
Q Consensus 844 ~~~~~~~~~~~l~~li~~Cl~~dP~~RPs~~eil~--~L~~ 882 (894)
. ... ..++.+|+.+||+.||.+|||+.|+++ |+.+
T Consensus 246 ~-~~~---s~~~~~li~~~L~~dP~~R~s~~e~l~hp~~~~ 282 (350)
T 4b9d_A 246 S-LHY---SYDLRSLVSQLFKRNPRDRPSVNSILEKGFIAK 282 (350)
T ss_dssp C-TTS---CHHHHHHHHHHTCSSGGGSCCHHHHHTSHHHHT
T ss_pred C-CCC---CHHHHHHHHHHCCCCHHHCCCHHHHHCCHHHHC
T ss_conf 7-557---999999999985589667908999963997616
No 7
>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=377.52 Aligned_cols=261 Identities=25% Similarity=0.439 Sum_probs=206.4
Q ss_pred CCCCCCCCEEEECCCEEEEEEEECCCCEEEEEEECCCC--HHHHHHHHHHHHHHHHCCCCCEEEECCEEEECCEEEEEEE
Q ss_conf 05987654471028389999998489848999974851--2659999999999994599824553224310463889998
Q 002673 606 TDNFSQANIIGCGGFGLVYKATLANGTTLAIKKLSGDL--GLMEREFKAEVEALSTAQHKNLVSLQGYCVHQGFRLLIYS 683 (894)
Q Consensus 606 ~~~~~~~~~LG~G~fg~Vy~a~~~~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~Hpniv~l~g~~~~~~~~~lV~E 683 (894)
.+++...+.||+|+||.||+|.+. ..||||+++... ....+.|.+|+.++++++|||||+++|++.+ +..++|||
T Consensus 35 ~~~l~l~~~iG~G~fG~Vy~~~~~--~~vAvK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~-~~~~iVmE 111 (307)
T 3omv_A 35 ASEVMLSTRIGSGSFGTVYKGKWH--GDVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTK-DNLAIVTQ 111 (307)
T ss_dssp TTSCCEEEECCCCSSSEEEEEESS--SEEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS-SSCEEEEE
T ss_pred HHHEEEEEEEEECCCCEEEEEEEC--CCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEC-CEEEEEEE
T ss_conf 799498449820888689999989--968999997268999999999999999985899887469999978-95899997
Q ss_pred ECCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEEECCCCCCCCCC
Q ss_conf 44699988998441489887579999999999999999988506998364189999857789985999973453323788
Q 002673 684 YMENGSLDYWLHEKADGASQLDWLTRLKIARGTSCGLAYMHQICEPHIVHRDIKSSNILLDDQFEAHLADFGLSRLILPY 763 (894)
Q Consensus 684 ~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~Ia~aL~yLHs~~~~~ivH~DLkp~NILl~~~~~vkL~DFGla~~~~~~ 763 (894)
||++|+|.++++... ..+++..+..|+.||+.||.|||+ ++|+||||||+|||+++++.+||+|||+|+.....
T Consensus 112 y~~gGsL~~~l~~~~---~~l~~~~~~~i~~qia~gL~yLH~---~~IiHRDlKp~NILl~~~~~~Ki~DFGla~~~~~~ 185 (307)
T 3omv_A 112 WCEGSSLYKHLHVQE---TKFQMFQLIDIARQTAQGMDYLHA---KNIIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRW 185 (307)
T ss_dssp CCSSCBHHHHHHTSC---CCCCHHHHHHHHHHHHHHHHHHHH---TTCBCSCCCSSSEEEETTEEEEECCCSSCBC----
T ss_pred CCCCCCHHHHHHHCC---CCCCHHHHHHHHHHHHHHHHHHHH---CCCCCCCCCHHHEEECCCCCEEEEECCCCEECCCC
T ss_conf 489987889875248---999999999999999999999977---99527855789978889990899441575424667
Q ss_pred C-CCCCCCCCCCCCCCCCCCCCC---CCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 8-743112455678668224367---677862118999999999991999999889301256999999884149877544
Q 002673 764 Q-THVTTELVGTLGYIPPEYGQA---WVATLRGDMYSFGVVMLELLTGKRPVDVLKPKMSRELVGWVLKMRSEGKQDQVF 839 (894)
Q Consensus 764 ~-~~~~~~~~gt~~y~APE~~~~---~~~s~ksDVwSlGvil~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 839 (894)
. .......+||+.|||||++.+ ..|+.++|||||||++|||+||+.||....... .....+ ..+...
T Consensus 186 ~~~~~~~~~~GT~~ymAPE~l~~~~~~~y~~ksDVwS~Gvvl~Elltg~~Pf~~~~~~~--~~~~~~----~~~~~~--- 256 (307)
T 3omv_A 186 SGSQQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHINNRD--QIIFMV----GRGYAS--- 256 (307)
T ss_dssp --------CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCHH--HHHHHH----HTTCCC---
T ss_pred CCCEEECCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHH--HHHHHH----HCCCCC---
T ss_conf 76403156446877249878614689987868775728999999997889989999699--999999----658888---
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf 52003999969999999999871115999999999999999820013
Q 002673 840 DPILRGKGFDEEMLQVLDVACMCVSQNPFKRPTVKEVVEWLNNVGAN 886 (894)
Q Consensus 840 d~~l~~~~~~~~~~~l~~li~~Cl~~dP~~RPs~~eil~~L~~i~~~ 886 (894)
+.+. ....+....+.+++.+||+.||++||||.+|++.|+.++..
T Consensus 257 -p~~~-~~~~~~~~~l~~li~~cl~~dP~~RPs~~ei~~~Le~l~~~ 301 (307)
T 3omv_A 257 -PDLS-KLYKNCPKAMKRLVADCVKKVKEERPLFPQILSSIELLQHS 301 (307)
T ss_dssp -CCST-TSCTTSCHHHHHHHHHHTCSSSTTSCCHHHHHHHHHHHHTT
T ss_pred -CCCC-CCCCCCHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHCC
T ss_conf -8720-03544569999999997577976890989999999997450
No 8
>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*
Probab=1.00 E-value=1 Score=375.26 Aligned_cols=271 Identities=25% Similarity=0.357 Sum_probs=215.1
Q ss_pred CHHHHHHHCCCCCCCCEEEECCCEEEEEEEECC------CCEEEEEEECCCCH-HHHHHHHHHHHHHHHCCC-CCEEEEC
Q ss_conf 989999740598765447102838999999848------98489999748512-659999999999994599-8245532
Q 002673 598 TIYELLKATDNFSQANIIGCGGFGLVYKATLAN------GTTLAIKKLSGDLG-LMEREFKAEVEALSTAQH-KNLVSLQ 669 (894)
Q Consensus 598 ~~~~~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~------~~~vavK~~~~~~~-~~~~~~~~Ei~~l~~l~H-pniv~l~ 669 (894)
...++....++|++.+.||+|+||.||+|.+.. ++.||||++..... ...+.+.+|+.+|..++| ||||+++
T Consensus 55 ~~~~wEi~~~~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~~~~~~~~~~E~~il~~l~hhpnIV~l~ 134 (353)
T 4ase_A 55 DASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLL 134 (353)
T ss_dssp CHHHHBCCGGGEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEE
T ss_pred CCCCCEECHHHEEEEEEEECCCCEEEEEEEECCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEE
T ss_conf 88551705799598209821789599999986888544775999999762358689999999999999757998487788
Q ss_pred CEEEEC-CEEEEEEEECCCCCHHHHHHHHCC------------CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCC
Q ss_conf 243104-638899984469998899844148------------9887579999999999999999988506998364189
Q 002673 670 GYCVHQ-GFRLLIYSYMENGSLDYWLHEKAD------------GASQLDWLTRLKIARGTSCGLAYMHQICEPHIVHRDI 736 (894)
Q Consensus 670 g~~~~~-~~~~lV~E~~~~gsL~~~l~~~~~------------~~~~l~~~~~~~i~~~Ia~aL~yLHs~~~~~ivH~DL 736 (894)
|+|.+. ...++|||||++|+|.++++.... ....+++..+..++.||+.||.|||+ ++|+||||
T Consensus 135 g~~~~~~~~~~iV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~yLH~---~~iiHRDL 211 (353)
T 4ase_A 135 GACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLAS---RKCIHRDL 211 (353)
T ss_dssp EEECCTTSCCEEEEECCTTEEHHHHHHHTGGGBCCC-------CTTCBCHHHHHHHHHHHHHHHHHHHH---TTCCCSCC
T ss_pred EEEEECCCEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHH---CCEECCCC
T ss_conf 999946977999998389897999997435666543334101103568999999999999999876762---78435746
Q ss_pred CCCCEEECCCCCEEEEECCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHC-CCCCCCCC
Q ss_conf 999857789985999973453323788874-3112455678668224367677862118999999999991-99999988
Q 002673 737 KSSNILLDDQFEAHLADFGLSRLILPYQTH-VTTELVGTLGYIPPEYGQAWVATLRGDMYSFGVVMLELLT-GKRPVDVL 814 (894)
Q Consensus 737 kp~NILl~~~~~vkL~DFGla~~~~~~~~~-~~~~~~gt~~y~APE~~~~~~~s~ksDVwSlGvil~ellt-G~~Pf~~~ 814 (894)
||+|||+++++.+||+|||+|+........ ......||+.|||||++.+..|+.++|||||||++|||+| |+.||...
T Consensus 212 K~~NILl~~~~~vKi~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~y~~ksDVwS~Gv~l~El~t~G~~Pf~~~ 291 (353)
T 4ase_A 212 AARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGV 291 (353)
T ss_dssp SGGGEEECGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTC
T ss_pred CCCCEEECCCCCEEECCCHHHHHCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCCCCEEEHHHHHHHHHHCCCCCCCCC
T ss_conf 72113057999789796543222456887203254014666569899946999975537406899999981899999998
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf 930125699999988414987754452003999969999999999871115999999999999999820013
Q 002673 815 KPKMSRELVGWVLKMRSEGKQDQVFDPILRGKGFDEEMLQVLDVACMCVSQNPFKRPTVKEVVEWLNNVGAN 886 (894)
Q Consensus 815 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~l~~li~~Cl~~dP~~RPs~~eil~~L~~i~~~ 886 (894)
.... .+...+ ..+...... ..++ .++.+++.+||+.||++|||+.+|++.|+++...
T Consensus 292 ~~~~--~~~~~i----~~g~~~~~p------~~~~---~~~~~li~~c~~~dP~~RPt~~eil~~L~~llq~ 348 (353)
T 4ase_A 292 KIDE--EFCRRL----KEGTRMRAP------DYTT---PEMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQA 348 (353)
T ss_dssp CCSH--HHHHHH----HHTCCCCCC------TTCC---HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred CHHH--HHHHHH----HCCCCCCCC------CCCC---HHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHH
T ss_conf 9899--999999----738988888------6578---9999999997686966793999999999999987
No 9
>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*
Probab=1.00 E-value=1 Score=370.15 Aligned_cols=253 Identities=21% Similarity=0.206 Sum_probs=204.6
Q ss_pred CCCCCCCCEEEECCCEEEEEEEE-CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEECCEEEECCEEEEEEEE
Q ss_conf 05987654471028389999998-48984899997485126599999999999945998245532243104638899984
Q 002673 606 TDNFSQANIIGCGGFGLVYKATL-ANGTTLAIKKLSGDLGLMEREFKAEVEALSTAQHKNLVSLQGYCVHQGFRLLIYSY 684 (894)
Q Consensus 606 ~~~~~~~~~LG~G~fg~Vy~a~~-~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~Hpniv~l~g~~~~~~~~~lV~E~ 684 (894)
.+.|+..+.||+|+||.||+|+. .++..||||++..... ..+|+.+++.++|||||++++++.+.+..|+||||
T Consensus 57 ~~~~~~~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~~~-----~~~E~~il~~l~HpnIV~l~~~~~~~~~~~ivmEy 131 (336)
T 4g3f_A 57 VHWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEVF-----RVEELVACAGLSSPRIVPLYGAVREGPWVNIFMEL 131 (336)
T ss_dssp TTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTC-----CTHHHHTTTTCCCTTBCCEEEEEEETTEEEEEECC
T ss_pred HHHEEECCEECCCCCEEEEEEEECCCCCEEEEEEECHHHH-----HHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEEC
T ss_conf 3351768685138780999999889998999999788886-----99999999857998999399999989999999966
Q ss_pred CCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCC-CEEEEECCCCCCCCCC
Q ss_conf 469998899844148988757999999999999999998850699836418999985778998-5999973453323788
Q 002673 685 MENGSLDYWLHEKADGASQLDWLTRLKIARGTSCGLAYMHQICEPHIVHRDIKSSNILLDDQF-EAHLADFGLSRLILPY 763 (894)
Q Consensus 685 ~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~Ia~aL~yLHs~~~~~ivH~DLkp~NILl~~~~-~vkL~DFGla~~~~~~ 763 (894)
+++|+|.++++.. ..+++..+..++.||+.||.|||+ ++|+||||||+|||++.++ .+||+|||+|+.+...
T Consensus 132 ~~gg~L~~~l~~~----~~l~e~~~~~~~~qi~~aL~ylH~---~~IiHRDlKp~NILl~~~g~~vKl~DFGla~~~~~~ 204 (336)
T 4g3f_A 132 LEGGSLGQLIKQM----GCLPEDRALYYLGQALEGLEYLHT---RRILHGDVKADNVLLSSDGSRAALCDFGHALCLQPD 204 (336)
T ss_dssp CTTCBHHHHHHHH----SSCCHHHHHHHHHHHHHHHHHHHT---TTEECSCCCGGGEEECTTSCCEEECCCTTCEEC---
T ss_pred CCCCCHHHHHHHC----CCCCHHHHHHHHHHHHHHHHHHHH---CCCEECCCCHHHEEEECCCCEEEEEECCCCEECCCC
T ss_conf 5998699999876----999999999999999999999998---890426167788799589997999627877685678
Q ss_pred CCC----CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 874----3112455678668224367677862118999999999991999999889301256999999884149877544
Q 002673 764 QTH----VTTELVGTLGYIPPEYGQAWVATLRGDMYSFGVVMLELLTGKRPVDVLKPKMSRELVGWVLKMRSEGKQDQVF 839 (894)
Q Consensus 764 ~~~----~~~~~~gt~~y~APE~~~~~~~s~ksDVwSlGvil~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 839 (894)
... .....+||+.|||||++.+..|+.++||||+||++|||++|+.||...........+ . .......
T Consensus 205 ~~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~~~~~~~~i---~---~~~~~~~-- 276 (336)
T 4g3f_A 205 GLGKSLLTGDYIPGTETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLNGCHPWTQYFRGPLCLKI---A---SEPPPIR-- 276 (336)
T ss_dssp ---------CCCCCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSTTTCCSCCHHHH---H---HSCCGGG--
T ss_pred CCCCCEECCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH---H---CCCCCCH--
T ss_conf 7654022178545580200899988999890899999999999999786998998999999999---8---0899800--
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCC
Q ss_conf 520039999699999999998711159999999999999998200
Q 002673 840 DPILRGKGFDEEMLQVLDVACMCVSQNPFKRPTVKEVVEWLNNVG 884 (894)
Q Consensus 840 d~~l~~~~~~~~~~~l~~li~~Cl~~dP~~RPs~~eil~~L~~i~ 884 (894)
.+ .+.....+.+++.+||+.||.+|||+.|+++.|....
T Consensus 277 --~~----~~~~s~~~~~li~~~L~~dP~~R~sa~el~~~l~~~l 315 (336)
T 4g3f_A 277 --EI----PPSCAPLTAQAIQEGLRKEPVHRASAMELRRKVGKAL 315 (336)
T ss_dssp --GS----CTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred --HC----CCCCCHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHH
T ss_conf --25----8667999999999976289768959999999999997
No 10
>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*
Probab=1.00 E-value=1 Score=367.80 Aligned_cols=270 Identities=24% Similarity=0.273 Sum_probs=203.4
Q ss_pred CCCCCCCEEEECCCEEEEEEEECCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEECCEEEECC----EEEEEE
Q ss_conf 5987654471028389999998489848999974851265999999999999459982455322431046----388999
Q 002673 607 DNFSQANIIGCGGFGLVYKATLANGTTLAIKKLSGDLGLMEREFKAEVEALSTAQHKNLVSLQGYCVHQG----FRLLIY 682 (894)
Q Consensus 607 ~~~~~~~~LG~G~fg~Vy~a~~~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~Hpniv~l~g~~~~~~----~~~lV~ 682 (894)
++|...+.||+|+||.||+|.+ +|+.||||++..... ....+..|+..+..++|||||+++|+|.+.+ ..++||
T Consensus 3 r~i~L~~~iG~G~fG~Vy~~~~-~g~~VAvK~l~~~~~-~~~~~e~Ei~~~~~l~HpNIv~l~g~~~~~~~~~~~~~lV~ 80 (303)
T 3hmm_A 3 RTIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSSREE-RSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVS 80 (303)
T ss_dssp GGEEEEEEEEECSSSEEEEEEE-TTEEEEEEEECGGGH-HHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEEE
T ss_pred CEEEEEEEEEECCCEEEEEEEE-CCEEEEEEEECCCCH-HHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCEEEEEEE
T ss_conf 5899978984089939999999-998999999883133-66999999999860899988709999984688723788775
Q ss_pred EECCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHC-----CCCCEEECCCCCCCEEECCCCCEEEEECCCC
Q ss_conf 84469998899844148988757999999999999999998850-----6998364189999857789985999973453
Q 002673 683 SYMENGSLDYWLHEKADGASQLDWLTRLKIARGTSCGLAYMHQI-----CEPHIVHRDIKSSNILLDDQFEAHLADFGLS 757 (894)
Q Consensus 683 E~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~Ia~aL~yLHs~-----~~~~ivH~DLkp~NILl~~~~~vkL~DFGla 757 (894)
||+++|+|.++++.. .++|..+..++.|++.||.|||+. ..++|+||||||+|||++.++.+||+|||++
T Consensus 81 Ey~~~gsL~~~l~~~-----~l~~~~~~~i~~~ia~gl~ylH~~~~~~~~~~~IiHRDlKp~NILl~~~~~~Ki~DFGla 155 (303)
T 3hmm_A 81 DYHEHGSLFDYLNRY-----TVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLA 155 (303)
T ss_dssp ECCTTCBHHHHHHHC-----CBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCCEECSCCCGGGEEECTTSCEEECCCTTC
T ss_pred CCCCCCCHHHHHHHC-----CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCEEECCCCCEEEEECCCC
T ss_conf 178999689999757-----999899999999999999999985240047898762467842089988997899847987
Q ss_pred CCCCCCCCC---CCCCCCCCCCCCCCCCCCCC------CCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHH--------H
Q ss_conf 323788874---31124556786682243676------778621189999999999919999998893012--------5
Q 002673 758 RLILPYQTH---VTTELVGTLGYIPPEYGQAW------VATLRGDMYSFGVVMLELLTGKRPVDVLKPKMS--------R 820 (894)
Q Consensus 758 ~~~~~~~~~---~~~~~~gt~~y~APE~~~~~------~~s~ksDVwSlGvil~elltG~~Pf~~~~~~~~--------~ 820 (894)
+........ .....+||+.|||||++.+. .++.++|||||||++|||+||..||........ .
T Consensus 156 ~~~~~~~~~~~~~~~~~~GT~~ymAPE~l~~~~~~~~~~~~~k~DVwS~Gvvl~El~tg~~~~~~~~~~~~p~~~~~~~~ 235 (303)
T 3hmm_A 156 VRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSD 235 (303)
T ss_dssp EEEETTTTEESCC-----CCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBCBTTBCCCCCCTTTTTSCSS
T ss_pred CCCCCCCCCEEEECCCCCCCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHCCCCC
T ss_conf 45567777322104642466462698884565455677657067666479999999878998776652235310025454
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCC-CCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCC
Q ss_conf 6999999884149877544520039-999699999999998711159999999999999998200134
Q 002673 821 ELVGWVLKMRSEGKQDQVFDPILRG-KGFDEEMLQVLDVACMCVSQNPFKRPTVKEVVEWLNNVGANR 887 (894)
Q Consensus 821 ~~~~~~~~~~~~~~~~~~~d~~l~~-~~~~~~~~~l~~li~~Cl~~dP~~RPs~~eil~~L~~i~~~~ 887 (894)
.............. .++.+.. ....+....+.+++.+||+.||++||||.+|++.|+++..+.
T Consensus 236 ~~~~~~~~~~~~~~----~rp~~p~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~ei~~~L~~l~~~~ 299 (303)
T 3hmm_A 236 PSVEEMRKVVCEQK----LRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQQE 299 (303)
T ss_dssp CCHHHHHHHHTTSC----CCCCCCGGGGSSHHHHHHHHHHHTTCCSSGGGSCCHHHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHCCC----CCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHC
T ss_conf 30999999875025----79988765566589999999999976059757959999999999889875
Done!