Query 002674
Match_columns 894
No_of_seqs 456 out of 3394
Neff 7.7
Searched_HMMs 29240
Date Tue Mar 26 22:00:49 2013
Command hhsearch -i /local_scratch/syshi/lefta3m2/002674.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H2_72-76//hhsearch_pdb/002674hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3v2u_C Protein GAL3; rossmann 1.0 1 1 427.0 20.8 343 480-869 23-407 (520)
2 2a2c_A N-acetylgalactosamine k 1.0 1 1 334.2 29.5 320 480-867 39-371 (478)
3 1pie_A Galactokinase; galactos 1.0 1 1 318.4 28.8 288 480-868 31-320 (419)
4 1wuu_A Galactokinase; galactos 1.0 1 1 308.6 23.0 236 480-757 20-257 (399)
5 2cz9_A Probable galactokinase; 1.0 1 1 274.6 22.4 212 497-757 1-212 (350)
6 3k85_A D-glycero-D-manno-hepto 1.0 1 1 270.9 16.5 197 497-739 3-211 (357)
7 3k17_A LIN0012 protein; protei 1.0 1 1 241.3 22.1 193 495-739 4-227 (365)
8 1kvk_A MK, mevalonate kinase; 1.0 1 1 240.2 17.0 211 496-739 4-244 (395)
9 4amg_A Snogd; transferase, pol 1.0 1 1 239.3 22.2 336 13-370 20-398 (400)
10 2pg9_A Phosphomevalonate kinas 1.0 1 1 236.3 19.8 188 497-739 3-216 (337)
No 1
>3v2u_C Protein GAL3; rossmann fold, GHMP superfamily, transcription regulation, transcription; HET: GLA ATP; 2.10A {Saccharomyces cerevisiae} PDB: 3v5r_A 2aj4_A*
Probab=1.00 E-value=1 Score=427.02 Aligned_cols=343 Identities=19% Similarity=0.269 Sum_probs=236.5
Q ss_pred HHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEEEC--CCCHHHHHHHHHHCCCCCCCC
Q ss_conf 899999985169998861899837521232363323897231232355259999965--885012445542114789999
Q 002674 480 QMRERKAAAGLFNWEEEIFVARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKI--SPSKQRLWKHALARHNDKGQG 557 (894)
Q Consensus 480 ~~~~~~~~~~~f~~~~~~~~~~APGRv~LiGEH~Dy~Gg~vl~~aI~~~~~vav~~~--~d~~~~l~~~~~~~~~~~~~~ 557 (894)
.......|...||. ++.++++|||||||||||+||+||+||||||+++++++++++ +|++++
T Consensus 23 ~~~l~~~F~~~fg~-~p~~v~~APGRVnLiGEHtDyngG~VLp~AI~~~~~vav~~~~~~d~~i~--------------- 86 (520)
T 3v2u_C 23 HLAVVDAFFQTYHV-KPDFIARSPGRVNLIGEHIDYCDFSVLPLAIDVDMLCAVKILDEKNPSIT--------------- 86 (520)
T ss_dssp HHHHHHHHHHHHSS-CCSEEEEEEEEEEEECTTCGGGTCCBEEEEEEEEEEEEEEECCCSSCEEE---------------
T ss_pred HHHHHHHHHHHHCC-CCCEEEECCEEEEEECCCEEECCCEEEEEEEECCEEEEEEECCCCCCEEE---------------
T ss_conf 99999999998689-98779976605898546743579779999960556999995468998799---------------
Q ss_pred CCCEEEEEECCCCCCCCCCCEECCCCCCCCCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHH---HHHH------CCCC
Q ss_conf 998189984366658999820046875346999751653201258899997147999999999---9991------9978
Q 002674 558 PMPVLQIVSYGSELSNRGPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVL---MTEL------GVRF 628 (894)
Q Consensus 558 ~~~~i~i~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~y~~g~~~~~---~~~~------g~~~ 628 (894)
+.|.+.++.. ..|++++++. ++.+ ......|+||++|++..+ +++. |...
T Consensus 87 ------i~S~~~~~~~--~~~~l~~~~~-----~~~i--------~~~~~~W~~Yv~g~i~~v~~~l~~~~~~~~~g~~~ 145 (520)
T 3v2u_C 87 ------LTNADPKFAQ--RKFDLPLDGS-----YMAI--------DPSVSEWSNYFKCGLHVAHSYLKKIAPERFNNTPL 145 (520)
T ss_dssp ------EEESSTTSCC--EEEECCTTCC-----CCCC--------CTTSCCHHHHHHHHHHHHHHHHHHHCHHHHSSSCC
T ss_pred ------EEECCCCCCC--EEEEECCCCC-----CCCC--------CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf ------9988888873--5998326755-----4446--------76653178899999999999998622333346778
Q ss_pred CCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHH---CCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCEE
Q ss_conf 998899998089999999848999999999999992---99999999999999999726089997125688531777808
Q 002674 629 EDSISMLVSSAVPEGKGVSSSASVEVASMSAIAAAH---GLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKL 705 (894)
Q Consensus 629 ~~G~~i~i~s~iP~g~GLsSSAAl~va~~~al~~~~---~~~l~~~~la~~a~~~E~~~~G~~~G~mDq~~s~~G~~~~~ 705 (894)
.||++.|+|+||.|+|| |||++||++.|++.++ +..+++.+++++|+++|+ ++|.+||+|||++|++|++|++
T Consensus 146 -~G~~i~i~s~vP~gsGL--SAA~~va~~~Al~~~~~g~~~~l~~~~la~la~~aE~-~vG~~~G~mDQ~as~~G~~g~~ 221 (520)
T 3v2u_C 146 -VGAQIFCQSDIPTGGGL--SSAFTCAAALATIRANMGKNFDISKKDLTRITAVAEH-YVGVNNGGMDQATSVYGEEDHA 221 (520)
T ss_dssp -CCEEEEEEECCCTTSSH--HHHHHHHHHHHHHHHHHCTTCCCBHHHHHHHHTTGGG-GGTCCCCSHHHHHHHHCBTTBE
T ss_pred -CCEEEEEECCCCCCCCH--HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH-HHCCCCCHHHHHHHHHCCCCEE
T ss_conf -76699996578999877--9999999999999974216999899999999999999-8689975362999985788859
Q ss_pred EEEEECC-CCEEEEEECCC----CEEEEEEECCC---CCCCCCCCCHHHHHHHHHCHHHHHHHCCCCCCCCCCCC--CCC
Q ss_conf 9998118-72248831699----82999996999---76568987035698753195766411059899877899--999
Q 002674 706 LAMVCQP-AELLGVVEIPS----HIRFWGIDSGI---RHSVGGADYGSVRAGAFMGRKMIKSTASGMLPQSLPSS--NGL 775 (894)
Q Consensus 706 ~~~d~~~-~~~~~~v~lp~----~~~~vi~~Sgv---~~~~~~~~y~~r~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 775 (894)
+++||++ +++ +.+++|+ ++.|+|+||++ +|.+++++||.||.+|..+.++|....+..+++....+ +..
T Consensus 222 l~id~~~~l~~-~~v~~p~~~~~~~~~vI~ns~v~~~k~~la~s~YN~Rr~eCe~Aa~~L~~~~g~~~~~~~~~~~~~~~ 300 (520)
T 3v2u_C 222 LYVEFRPKLKA-TPFKFPQLKNHEISFVIANTLVKSNKFETAPTNYNLRVIEVTVAANALATRYSVALPSHKDNSNSERG 300 (520)
T ss_dssp EEEECSSSCEE-EEECCCCCSSCEEEEEEEECCCCCCHHHHTTTTHHHHHHHHHHHHHHHHHHTTBCCCCCCSCSSCTTC
T ss_pred EEEECCCCCEE-EEEECCCCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf 99975787636-89627876679848999989986452545642336999999999999988608763223232223434
Q ss_pred CCCCCCHHHHHHH------------HHHHCHHHHHCCCHHHHHHH---HHH-CCC--CCCCHHHHHHHHCCCCCCCEECC
Q ss_conf 9998310337767------------64100034422993679978---631-178--65404567644189999851005
Q 002674 776 NNIEPEVDGVELL------------EAEASLDYLCNLSPHRFEAL---YAK-NIP--ESIVGEEFSKNYGDHNDPVTVID 837 (894)
Q Consensus 776 ~~~~~~~~~~~~l------------~~~~~~~~l~~~~~~~~~~~---~~~-~l~--e~~~~~~~~~~~~~~~~~~~~~~ 837 (894)
..|+..+.-+..+ .....++.+.++..+.++.. |+. ++. ..++.++|.+.|.+.+ ++
T Consensus 301 sLRdv~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~yt~~e~~~~l~~~~~~l~~~~l~~~-~~---- 375 (520)
T 3v2u_C 301 NLRDFMDAYYARYENQAQPWNGDIGTGIERLLKMLQLVEESFSRKKSGFTVHEASTALNCSREEFTRDYLTTF-PV---- 375 (520)
T ss_dssp CHHHHHHHHHHHHCTTSCCCSSCHHHHHHHHHHHHHHHHHHHTTCTTCBCHHHHHHHTTSCHHHHHHHHTSSS-CE----
T ss_pred CHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHCCCC-CC----
T ss_conf 1777767665310122222122112577779999888898753302455589998764577566543202345-31----
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 78611223533564312355999999997133
Q 002674 838 PKRTYFVRAPVCHPIYENFRVKVCQRILIAYL 869 (894)
Q Consensus 838 ~~~~~~l~~ra~Hv~~E~~Rv~~~~~~l~~~~ 869 (894)
.++.|++++||+|||+||.||.+|+++|+++.
T Consensus 376 ~~~~~~l~~RA~HVv~E~~Rv~~~~~al~~~~ 407 (520)
T 3v2u_C 376 RFQVLKLYQRAKHVYSESLRVLKALKMMTSAT 407 (520)
T ss_dssp EESCBCHHHHHHHHHHHHHHHHHHHHHHTCSS
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 11108999999999999999999999997477
No 2
>2a2c_A N-acetylgalactosamine kinase; galactokinase, , transferase; HET: NG1 ADP; 1.65A {Homo sapiens} PDB: 2a2d_A*
Probab=1.00 E-value=1 Score=334.24 Aligned_cols=320 Identities=19% Similarity=0.233 Sum_probs=233.3
Q ss_pred HHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEEECCCCHHHHHHHHHHCCCCCCCCCC
Q ss_conf 89999998516999886189983752123236332389723123235525999996588501244554211478999999
Q 002674 480 QMRERKAAAGLFNWEEEIFVARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPM 559 (894)
Q Consensus 480 ~~~~~~~~~~~f~~~~~~~~~~APGRv~LiGEH~Dy~Gg~vl~~aI~~~~~vav~~~~d~~~~l~~~~~~~~~~~~~~~~ 559 (894)
.......|...||. ++.++++||||+||+|||+||+|+.||++||++++++++++++++.+
T Consensus 39 ~~~~~~~f~~~fg~-~~~~~~~APgrv~L~Geh~D~~g~~vl~~AI~~~~~v~v~~~~~~~i------------------ 99 (478)
T 2a2c_A 39 LLKLKEMFNSKFGS-IPKFYVRAPGRVNIIGEHIDYCGYSVLPMAVEQDVLIAVEPVKTYAL------------------ 99 (478)
T ss_dssp HHHHHHHHHHHHSS-CCSEEEEEEEEEEEECTTCGGGTCCBEEEEEEEEEEEEEEECSSSCE------------------
T ss_pred HHHHHHHHHHHHCC-CCCEEEEECEEEEEECCCEEECCCEEEEEEECCCEEEEEEECCCCEE------------------
T ss_conf 99999999998589-98789992328987233411479768988722468999998899869------------------
Q ss_pred CEEEEEECCCCCCCCCCCEECCCCCCCCCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEC
Q ss_conf 81899843666589998200468753469997516532012588999971479999999999991997899889999808
Q 002674 560 PVLQIVSYGSELSNRGPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTELGVRFEDSISMLVSSA 639 (894)
Q Consensus 560 ~~i~i~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~y~~g~~~~~~~~~g~~~~~G~~i~i~s~ 639 (894)
++.+.+.++ ..++++++++.. ......|.||+++++..+++..+.....|+++.++|+
T Consensus 100 ---~i~~~~~~~----~~~~~~~~~l~~---------------~~~~~~~~n~v~~a~~~v~~~~~~~~~~g~~i~i~s~ 157 (478)
T 2a2c_A 100 ---QLANTNPLY----PDFSTSANNIQI---------------DKTKPLWHNYFLCGLKGIQEHFGLSNLTGMNCLVDGN 157 (478)
T ss_dssp ---EEEESSTTS----CCEEECCCCC-----------------CCSSCCHHHHHHHHHHHHHHHTTCCSCCCEEEEEEEC
T ss_pred ---EEEECCCCC----CCEECCCHHCCC---------------CCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECC
T ss_conf ---999889887----604424100256---------------7776458899999999999997206998669999898
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCEEEEEEECCCCEEEEE
Q ss_conf 99999998489999999999999929999999999999999972608999712568853177780899981187224883
Q 002674 640 VPEGKGVSSSASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVV 719 (894)
Q Consensus 640 iP~g~GLsSSAAl~va~~~al~~~~~~~l~~~~la~~a~~~E~~~~G~~~G~mDq~~s~~G~~~~~~~~d~~~~~~~~~v 719 (894)
||.|+|||||||++||++.|++.+++.++++++++++|+++|+ ++|.+||+|||+++++|+.|.+++++|++... ..+
T Consensus 158 IP~g~GLgSSAA~~va~~~al~~~~~~~ls~~~l~~la~~~E~-~~g~~~g~~D~~a~~~G~~g~~~~i~f~~~~~-~~~ 235 (478)
T 2a2c_A 158 IPPSSGLSSSSALVCCAGLVTLTVLGRNLSKVELAEICAKSER-YIGTEGGGMDQSISFLAEEGTAKLIEFSPLRA-TDV 235 (478)
T ss_dssp SCTTSSSCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHG-GGTCCCCSHHHHHHHHCBTTBEEEEETTTTEE-EEE
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-HCCCCCCCHHHHHHHHCCCCCEEEEECCCCCE-EEE
T ss_conf 9999884389999999999999973899899999999999996-45999851789998754689589997578805-773
Q ss_pred ECCCCEEEEEEECCCCCCC-CCCCCHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCHHHHH
Q ss_conf 1699829999969997656-898703569875319576641105989987789999999983103377676410003442
Q 002674 720 EIPSHIRFWGIDSGIRHSV-GGADYGSVRAGAFMGRKMIKSTASGMLPQSLPSSNGLNNIEPEVDGVELLEAEASLDYLC 798 (894)
Q Consensus 720 ~lp~~~~~vi~~Sgv~~~~-~~~~y~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~ 798 (894)
++|+++.|+|+||++++++ ..++||.|+.+|..++.++...... ++.+. ..+.. ++...
T Consensus 236 ~~~~~~~~vi~~s~~~~~t~~t~~yn~r~~e~~~A~~~L~~~~~~------------~~~~~--~~l~d------~~~~~ 295 (478)
T 2a2c_A 236 KLPSGAVFVIANSCVEMNKAATSHFNIRVMECRLAAKLLAKYKSL------------QWDKV--LRLEE------VQAKL 295 (478)
T ss_dssp CCCTTEEEEEEECCCCCCGGGSSHHHHHHHHHHHHHHHHHHHTTC------------CTTTC--CCHHH------HHHHH
T ss_pred CCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC------------CCCCC--CHHHH------HHHHH
T ss_conf 389982899993898654345540678999999999998765166------------63221--12876------43210
Q ss_pred CCCHHHHHHHHHHCCC-CCC-----------CHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 2993679978631178-654-----------0456764418999985100578611223533564312355999999997
Q 002674 799 NLSPHRFEALYAKNIP-ESI-----------VGEEFSKNYGDHNDPVTVIDPKRTYFVRAPVCHPIYENFRVKVCQRILI 866 (894)
Q Consensus 799 ~~~~~~~~~~~~~~l~-e~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ra~Hv~~E~~Rv~~~~~~l~ 866 (894)
..+..++.......+. +.. +.++|.+.+.+.. + .....|++++|++|+++|+.||.+++++|+
T Consensus 296 ~~~~~~~v~~v~~~~~~~~~~~~~i~~~l~~~~~~~~~~~l~~~-~----~~~~~~~~~~ra~h~~~e~~rv~~~~~aL~ 370 (478)
T 2a2c_A 296 GISLEEMLLVTEDALHPEPYNPEEICRCLGISLEELRTQILSPN-T----QDVLIFKLYQRAKHVYSEAARVLQFKKICE 370 (478)
T ss_dssp TCCHHHHHHHHHHHSCSSCBCHHHHHHHHTCCHHHHHHHTSCGG-G----TTCCCBCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHCCCCC-C----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 11288999999875164546599999875765887776304533-2----110168999999999989999999999997
Q ss_pred H
Q ss_conf 1
Q 002674 867 A 867 (894)
Q Consensus 867 ~ 867 (894)
+
T Consensus 371 ~ 371 (478)
T 2a2c_A 371 E 371 (478)
T ss_dssp H
T ss_pred H
T ss_conf 5
No 3
>1pie_A Galactokinase; galactose, galactosemia, transferase; HET: GLA; 2.10A {Lactococcus lactis} SCOP: d.14.1.5 d.58.26.7
Probab=1.00 E-value=1 Score=318.40 Aligned_cols=288 Identities=23% Similarity=0.341 Sum_probs=216.0
Q ss_pred HHHHHHHHHCCCCCCCCE-EEEECCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEEECCCCHHHHHHHHHHCCCCCCCCC
Q ss_conf 899999985169998861-8998375212323633238972312323552599999658850124455421147899999
Q 002674 480 QMRERKAAAGLFNWEEEI-FVARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGP 558 (894)
Q Consensus 480 ~~~~~~~~~~~f~~~~~~-~~~~APGRv~LiGEH~Dy~Gg~vl~~aI~~~~~vav~~~~d~~~~l~~~~~~~~~~~~~~~ 558 (894)
.......|...||. ++. ++++||||+||+|||+||+|+.+|++||++++++.+++++++.+
T Consensus 31 ~~~~~~~f~~~~g~-~~~~~~~~APgkv~L~Geh~d~~G~~~l~~aI~l~~~v~v~~~~~~~i----------------- 92 (419)
T 1pie_A 31 LSALTEKFAEVFGD-TKEVEYFFSPGRINLIGEHTDYNGGYVFPASITIGTTGLARLREDKKV----------------- 92 (419)
T ss_dssp HHHHHHHHHHHHSC-CCSCEEEEEEEEEEEECCSCTTTTCEEEEEEEEEEEEEEEEECSSSEE-----------------
T ss_pred HHHHHHHHHHHHCC-CCCEEEEEEEEEEEECCCCEEECCCEEEEEEECCCEEEEEEECCCCEE-----------------
T ss_conf 99999999998589-976399996578997155521079779999870549999998999979-----------------
Q ss_pred CCEEEEEECCCCCCCCCCCEECCCCCCCCCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEE
Q ss_conf 98189984366658999820046875346999751653201258899997147999999999999199789988999980
Q 002674 559 MPVLQIVSYGSELSNRGPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTELGVRFEDSISMLVSS 638 (894)
Q Consensus 559 ~~~i~i~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~y~~g~~~~~~~~~g~~~~~G~~i~i~s 638 (894)
.+.+.+.+... ..+++++++. ..+...|.||+++++..+. +.+..+..|+++.+.|
T Consensus 93 ----~i~~~~~~~~~---~~~~~~~~~~----------------~~~~~~~~n~v~~~~~~l~-~~g~~~~~g~~i~i~s 148 (419)
T 1pie_A 93 ----KLYSENFPKLG---VIEFDLDEVE----------------KKDGELWSNYVKGMIVMLK-GAGYEIDKGFELLIKG 148 (419)
T ss_dssp ----EEEETTCGGGC---CEEEETTCTT----------------SCCTTCTHHHHHHHHHHHH-HTTCCCCSCEEEEEEE
T ss_pred ----EEEECCCCCCC---EEEEECCCCC----------------CCCCCCHHHHHHHHHHHHH-HHCCCCCCCEEEEEEC
T ss_conf ----99988888765---2677644456----------------7777689999999999999-8189889987999988
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCEEEEEEECCCCEEEE
Q ss_conf 89999999848999999999999992999999999999999997260899971256885317778089998118722488
Q 002674 639 AVPEGKGVSSSASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGV 718 (894)
Q Consensus 639 ~iP~g~GLsSSAAl~va~~~al~~~~~~~l~~~~la~~a~~~E~~~~G~~~G~mDq~~s~~G~~~~~~~~d~~~~~~~~~ 718 (894)
+||.|+|||||||+++|++.|++.+++.++++++|+++|+++|+.++|.|||+|||+++++||.+.++++++++..+ ++
T Consensus 149 ~IP~gaGLGSSaA~~vA~~~al~~l~g~~ls~~el~~la~~~E~~~~G~~~G~~D~~~~~~Gg~~~~~~~d~~~~~~-~~ 227 (419)
T 1pie_A 149 EIPTASGLSSSASLELLVGVVLDDLFNLNVPRLELVQLGQKTENDYIGVNSGILDQFAIGFGEVKKAIELDCNTLKY-EM 227 (419)
T ss_dssp CSCTTSSSCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTTCCCCCSHHHHHHHHCBTTEEEEEETTTCCE-EE
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCEEEEEECCCCCE-EE
T ss_conf 89999880579999999999999984799999999999999999853898640418999854678599963699826-89
Q ss_pred EECC-CCEEEEEEECCCCCCCCCCCCHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCHHHH
Q ss_conf 3169-982999996999765689870356987531957664110598998778999999998310337767641000344
Q 002674 719 VEIP-SHIRFWGIDSGIRHSVGGADYGSVRAGAFMGRKMIKSTASGMLPQSLPSSNGLNNIEPEVDGVELLEAEASLDYL 797 (894)
Q Consensus 719 v~lp-~~~~~vi~~Sgv~~~~~~~~y~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l 797 (894)
+++| +++.|++++|++++++..++||.||.+|..++.++.. ...+..+
T Consensus 228 l~~~~~~~~~vl~~~~~~~~t~~~~y~~r~~~~~~a~~~l~~-------------------------------~~~v~~l 276 (419)
T 1pie_A 228 VPVELRDYDIVIMNTNKPRALTESKYNERFAETREALKRMQT-------------------------------RLDIQSL 276 (419)
T ss_dssp EECCCTTEEEEEEECCCCCCTTCHHHHHHHHHHHHHHHHHHH-------------------------------HCCCSSG
T ss_pred EECCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHH-------------------------------CCCCCCH
T ss_conf 506988838999978986645621679999999999999742-------------------------------3465744
Q ss_pred HCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 22993679978631178654045676441899998510057861122353356431235599999999713
Q 002674 798 CNLSPHRFEALYAKNIPESIVGEEFSKNYGDHNDPVTVIDPKRTYFVRAPVCHPIYENFRVKVCQRILIAY 868 (894)
Q Consensus 798 ~~~~~~~~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ra~Hv~~E~~Rv~~~~~~l~~~ 868 (894)
+++++..++... ..+++ ...++|+.|++.|+.|+.++.++|+++
T Consensus 277 ~~~~~~~~~~~~-~~l~~--------------------------~~~~~~~~~~v~e~~r~~~~~~al~~~ 320 (419)
T 1pie_A 277 GELSNEEFDANT-DLIGD--------------------------ETLIKRARHAVYENNRTKIAQKAFVAG 320 (419)
T ss_dssp GGCCHHHHHHTG-GGTCC--------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHCCHHHHHHHH-HHCCC--------------------------HHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 559999999887-31686--------------------------899999999987889999999998729
No 4
>1wuu_A Galactokinase; galactosemia, GHMP superfamily, transferase; HET: GLA ANP; 2.50A {Homo sapiens} SCOP: d.14.1.5 d.58.26.7
Probab=1.00 E-value=1 Score=308.58 Aligned_cols=236 Identities=25% Similarity=0.383 Sum_probs=189.2
Q ss_pred HHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEEECCCCHHHHHHHHHHCCCCCCCCCC
Q ss_conf 89999998516999886189983752123236332389723123235525999996588501244554211478999999
Q 002674 480 QMRERKAAAGLFNWEEEIFVARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPM 559 (894)
Q Consensus 480 ~~~~~~~~~~~f~~~~~~~~~~APGRv~LiGEH~Dy~Gg~vl~~aI~~~~~vav~~~~d~~~~l~~~~~~~~~~~~~~~~ 559 (894)
.......|...||. ++.++++||||+||+|||+||+|+.+|++||++++++.+++++++.++
T Consensus 20 ~~~~~~~f~~~~~~-~~~~~~~APgkv~L~Geh~Dy~~~~~l~~ai~~~~~v~v~~~~~~~i~----------------- 81 (399)
T 1wuu_A 20 LAEARRAFREEFGA-EPELAVSAPGRVNLIGEHTDYNQGLVLPMALELMTVLVGSPRKDGLVS----------------- 81 (399)
T ss_dssp HHHHHHHHHHHHSS-CCSEEEEEEEEEEEECTTCGGGTCEEEEEEEEEEEEEEEEEETTCEEE-----------------
T ss_pred HHHHHHHHHHHHCC-CCCEEEEEEEEEEEECCCCCCCCCEEEEEEECCCEEEEEEECCCCEEE-----------------
T ss_conf 99999999998589-988899920169881226220798888577025599999999999699-----------------
Q ss_pred CEEEEEECCCCCCCCC-CCEECCCCCCCCCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEE
Q ss_conf 8189984366658999-820046875346999751653201258899997147999999999999199789988999980
Q 002674 560 PVLQIVSYGSELSNRG-PTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTELGVRFEDSISMLVSS 638 (894)
Q Consensus 560 ~~i~i~s~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~y~~g~~~~~~~~~g~~~~~G~~i~i~s 638 (894)
+.+.+. .... ...++++++. +++. ..+...|.||+.+++..+ .+... .|+++.+.|
T Consensus 82 ----i~~~~~--~~~~~~~~~~~~~~~----~~~~---------~~~~~~~~n~v~~a~~~l---~~~~~-~g~~i~i~s 138 (399)
T 1wuu_A 82 ----LLTTSE--GADEPQRLQFPLPTA----QRSL---------EPGTPRWANYVKGVIQYY---PAAPL-PGFSAVVVS 138 (399)
T ss_dssp ----EEECCS--SSCSCSEEEEECCCS----SCCC---------CCCSSGGGHHHHHHHHHC---SSSCC-CEEEEEEEE
T ss_pred ----EEECCC--CCCCCCCEEEECCCC----CCCC---------CCCCCCHHHHHHHHHHHH---CCCCC-CCEEEEEEC
T ss_conf ----998888--876543047733733----2345---------667887899999999994---47998-876999978
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCEEEEEEECCCCEEEE
Q ss_conf 89999999848999999999999992999999999999999997260899971256885317778089998118722488
Q 002674 639 AVPEGKGVSSSASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGV 718 (894)
Q Consensus 639 ~iP~g~GLsSSAAl~va~~~al~~~~~~~l~~~~la~~a~~~E~~~~G~~~G~mDq~~s~~G~~~~~~~~d~~~~~~~~~ 718 (894)
+||.|+|||||||++||++.|++.+++.++++++|+++|+++|+.++|.|||+|||+++++|+.+.++++++++..+ ++
T Consensus 139 ~IP~gaGLGSSaA~~vA~~~al~~l~~~~l~~~~l~~la~~~E~~~~G~~~G~~D~~~~~~Gg~~~~~~~~~~~~~~-~~ 217 (399)
T 1wuu_A 139 SVPLGGGLSSSASLEVATYTFLQQLCPDSGTIAARAQVCQQAEHSFAGMPCGIMDQFISLMGQKGHALLIDCRSLET-SL 217 (399)
T ss_dssp CSCTTSSSCHHHHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHHHHTCCCCCSHHHHHHHHCCTTEEEEEETTTCCE-EE
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCEEEEEECCCCCE-EE
T ss_conf 89999883179999999999999982899899999999999999755898740889999856688089985689856-78
Q ss_pred EECC-CCEEEEEEECCCCCCCCCCCCHHHHHHHHHCHHHH
Q ss_conf 3169-98299999699976568987035698753195766
Q 002674 719 VEIP-SHIRFWGIDSGIRHSVGGADYGSVRAGAFMGRKMI 757 (894)
Q Consensus 719 v~lp-~~~~~vi~~Sgv~~~~~~~~y~~r~~~~~~~~~~~ 757 (894)
+++| +++.+++++|++++++..+.||.|+.+|..++.++
T Consensus 218 ~~~~~~~~~~vl~~~~~~~~t~~~~y~~r~~~~~~a~~~l 257 (399)
T 1wuu_A 218 VPLSDPKLAVLITNSNVRHSLASSEYPVRRRQCEEVARAL 257 (399)
T ss_dssp EECCCSSEEEEEEEEEEEC--CTTTHHHHHHHHHHHHHHT
T ss_pred ECCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 4478888699999799865555331799999999999995
No 5
>2cz9_A Probable galactokinase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.50A {Pyrococcus horikoshii} PDB: 2dei_A* 2dej_A* 1s4e_A*
Probab=1.00 E-value=1 Score=274.61 Aligned_cols=212 Identities=25% Similarity=0.435 Sum_probs=175.4
Q ss_pred EEEEECCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEEECCCCHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCCC
Q ss_conf 18998375212323633238972312323552599999658850124455421147899999981899843666589998
Q 002674 497 IFVARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQIVSYGSELSNRGP 576 (894)
Q Consensus 497 ~~~~~APGRv~LiGEH~Dy~Gg~vl~~aI~~~~~vav~~~~d~~~~l~~~~~~~~~~~~~~~~~~i~i~s~~~~~~~~~~ 576 (894)
+++++|||||||+|||+||+|+.++++||++++++.+++++++.+++. +.+ ...
T Consensus 1 m~~~~aP~ki~L~Ge~~d~~~~~~l~~ai~~~~~v~v~~~~~~~i~i~---------------------~~~--~~~--- 54 (350)
T 2cz9_A 1 MIKVKSPGRVNLIGEHTDYTYGYVMPMAINLYTKIEAEKHGEVILYSE---------------------HFG--EER--- 54 (350)
T ss_dssp CEEEEEEEEEEEECTTCGGGTCEEEEEEEEEEEEEEEEEESSEEEEET---------------------TTT--EEE---
T ss_pred CEEEEECCEEEEEECCHHHCCCEEEEEEEECEEEEEEEECCCCEEEEE---------------------ECC--CCC---
T ss_conf 969995307887502730079779999850329999998799959999---------------------889--886---
Q ss_pred CEECCCCCCCCCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHH
Q ss_conf 20046875346999751653201258899997147999999999999199789988999980899999998489999999
Q 002674 577 TFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVAS 656 (894)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~y~~g~~~~~~~~~g~~~~~G~~i~i~s~iP~g~GLsSSAAl~va~ 656 (894)
..++ ++. .+...|.||+++++..+ +..+... .|+++.+.|+||.|+|||||||+.+|+
T Consensus 55 ~~~~-l~~-------------------~~~~~~~~~~~~~~~~l-~~~~~~~-~g~~i~i~s~IP~g~GLGSSaA~~vA~ 112 (350)
T 2cz9_A 55 KFSL-NDL-------------------RKENSWIDYVKGIFWVL-KESDYEV-GGIKGRVSGNLPLGAGLSSSASFEVGI 112 (350)
T ss_dssp EECT-TCC-------------------CCCSSTHHHHHHHHHHH-HHTTCCC-CEEEEEEECSCCTTSSSCHHHHHHHHH
T ss_pred CCCC-CCC-------------------CCCCCHHHHHHHHHHHH-HHCCCCC-CCEEEEEECCCCCCCCCCHHHHHHHHH
T ss_conf 4021-478-------------------98776889999999999-8649988-873999978999888845299999999
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCEEEEEEECCCCEEEEEECCCCEEEEEEECCCCC
Q ss_conf 99999992999999999999999997260899971256885317778089998118722488316998299999699976
Q 002674 657 MSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVVEIPSHIRFWGIDSGIRH 736 (894)
Q Consensus 657 ~~al~~~~~~~l~~~~la~~a~~~E~~~~G~~~G~mDq~~s~~G~~~~~~~~d~~~~~~~~~v~lp~~~~~vi~~Sgv~~ 736 (894)
+.|++.+++.++++++++++|+++|++++|+|||+|||+++++|+.++++++|+++..+ +++++|+++.++++++++++
T Consensus 113 ~~al~~l~~~~l~~~el~~la~~~e~~~~g~~~gi~d~~~~~~g~~~~~~~~d~~~~~~-~~l~~~~~~~~vl~~~~~~~ 191 (350)
T 2cz9_A 113 LETLDKLYNLKLDSLSKVLLAKKAENEFVGVPCGILDQFAVVFGREGNVIFLDTHTLDY-EYIPFPKDVSILVFYTGVRR 191 (350)
T ss_dssp HHHHHHHTTCCCCHHHHHHHHHHHHHHTTCCCCCSHHHHHHHHCCTTEEEEEETTTCCE-EEEECCTTEEEEEEECSCC-
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCEEEEEECCCCCE-EEECCCCCCEEEEEECCCCC
T ss_conf 99999983799999999999999999743898641428899861788599996699857-99707999689999799977
Q ss_pred CCCCCCCHHHHHHHHHCHHHH
Q ss_conf 568987035698753195766
Q 002674 737 SVGGADYGSVRAGAFMGRKMI 757 (894)
Q Consensus 737 ~~~~~~y~~r~~~~~~~~~~~ 757 (894)
++....|+.|+.+|..+++.+
T Consensus 192 ~~~t~~~~~r~~~~~~a~~~~ 212 (350)
T 2cz9_A 192 ELASSEYAERKHIAEESLKIL 212 (350)
T ss_dssp ---CHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHH
T ss_conf 556236899999999999996
No 6
>3k85_A D-glycero-D-manno-heptose 1-phosphate kinase; bacteriodes thetaiotaomicron, protein structure initiative II(PSI II), nysgxrc; 2.28A {Bacteroides thetaiotaomicron}
Probab=1.00 E-value=1 Score=270.92 Aligned_cols=197 Identities=17% Similarity=0.175 Sum_probs=159.9
Q ss_pred EEEEECCCCCCCCCCCCCC------CCCEEECCCCCCCEEEEEEECCCCHHHHHHHHHHCCCCCCCCCCCEEEEEECCCC
Q ss_conf 1899837521232363323------8972312323552599999658850124455421147899999981899843666
Q 002674 497 IFVARAPGRLDVMGGIADY------SGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQIVSYGSE 570 (894)
Q Consensus 497 ~~~~~APGRv~LiGEH~Dy------~Gg~vl~~aI~~~~~vav~~~~d~~~~l~~~~~~~~~~~~~~~~~~i~i~s~~~~ 570 (894)
+++++|||||||+|||+|| +||.||++||++++++++++++|++++++ |.+
T Consensus 3 mi~~~APgRvnL~GehtD~~~~~~~~gG~vl~~AId~~~~v~i~~~~d~~i~i~---------------------s~~-- 59 (357)
T 3k85_A 3 LVRSKAPLRLGLAGGGSDVSPYSDIYGGLILNATINLYAYCTIEETNSGRIEIN---------------------AYD-- 59 (357)
T ss_dssp CEEEEEEEEEEEECTTTTSTTHHHHTCEEEEEEEEEEEEEEEEEECSSSEEEEE---------------------ETT--
T ss_pred EEEEECCEEEEEECCCCCCCCHHHCCCCEEEEEEEECCEEEEEEECCCCEEEEE---------------------ECC--
T ss_conf 899988668998048756712130179889999974738999999789869999---------------------878--
Q ss_pred CCCCCCCEECCCCCCCCCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCHHH
Q ss_conf 58999820046875346999751653201258899997147999999999999199789988999980899999998489
Q 002674 571 LSNRGPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSA 650 (894)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~y~~g~~~~~~~~~g~~~~~G~~i~i~s~iP~g~GLsSSA 650 (894)
++. ..++++.+ + -+...|.||+++++..+. ..+.....|+++.+.++||.|+||||||
T Consensus 60 ~~~---~~~~~~~~------~------------~~~~~~~~~v~~~~~~l~-~~~~~~~~g~~i~i~~~iP~g~GLgSSa 117 (357)
T 3k85_A 60 AQC---CKSYLSMS------Q------------LEIDGEASLIKGVYNRII-RDYRLEPKSFKITTYNDAPAGSGLGTSS 117 (357)
T ss_dssp TTE---EEEEECCS------S------------CCCCSSSHHHHHHHHHHH-HHTTCCCCCEEEEEEESSCSSSSSCHHH
T ss_pred CCC---EEEEECCC------C------------CCCCCHHHHHHHHHHHHH-HHCCCCCCCEEEEEECCCCCCCCCHHHH
T ss_conf 995---59982663------2------------344666779999999999-8468888877999956899998856999
Q ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCEEEEEEECCCCEEEEEECCCC------
Q ss_conf 99999999999992999999999999999997260899971256885317778089998118722488316998------
Q 002674 651 SVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVVEIPSH------ 724 (894)
Q Consensus 651 Al~va~~~al~~~~~~~l~~~~la~~a~~~E~~~~G~~~G~mDq~~s~~G~~~~~~~~d~~~~~~~~~v~lp~~------ 724 (894)
|++||++.|++.+++.++++++++++|+++|+.++|.|||+|||+++++||.+.+.+.++++..+ +++++++.
T Consensus 118 a~~va~~~al~~~~~~~l~~~~l~~~a~~~E~~~~G~~~G~~D~~a~~~Gg~~~~~~~~~~~~~~-~~l~~~~~~~~~l~ 196 (357)
T 3k85_A 118 TMVVCILKAFIEWLSLPLGDYETSRLAYEIERKDLGLSGGKQDQYAAAFGGFNYMEFLQNDLVIV-NPLKMKRWIVDELE 196 (357)
T ss_dssp HHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHCSEEEEEEETTTEEEE-EEECCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCEEEEEECCCCEEE-EEEECCHHHHHHCC
T ss_conf 99999999999986799899999999999999871599727889999847963999707995269-99734834555148
Q ss_pred EEEEEEECCCCCCCC
Q ss_conf 299999699976568
Q 002674 725 IRFWGIDSGIRHSVG 739 (894)
Q Consensus 725 ~~~vi~~Sgv~~~~~ 739 (894)
+.++|++|+++|++.
T Consensus 197 ~~lvi~~t~~~~~a~ 211 (357)
T 3k85_A 197 SSMVLYFTGRSRSSA 211 (357)
T ss_dssp HTEEEECC-------
T ss_pred CEEEEEECCCCCCHH
T ss_conf 669999899962079
No 7
>3k17_A LIN0012 protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics, NEW YORK SGX research center for structural genomics; HET: PGE; 2.10A {Listeria innocua}
Probab=1.00 E-value=1 Score=241.34 Aligned_cols=193 Identities=18% Similarity=0.230 Sum_probs=149.9
Q ss_pred CCEEEEECCCCCCCCCCCCCCC-CCEEECCCCCCCEEEEEEECCCCHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCC
Q ss_conf 8618998375212323633238-972312323552599999658850124455421147899999981899843666589
Q 002674 495 EEIFVARAPGRLDVMGGIADYS-GSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQIVSYGSELSN 573 (894)
Q Consensus 495 ~~~~~~~APGRv~LiGEH~Dy~-Gg~vl~~aI~~~~~vav~~~~d~~~~l~~~~~~~~~~~~~~~~~~i~i~s~~~~~~~ 573 (894)
..+++++|||||+|||||+||+ |++||++||+++++++++++++.. +.|.+ +..
T Consensus 4 ~~~i~~~APGrv~L~GEh~~~~~g~~~l~~Ai~~~~~v~v~~~~~~~-----------------------i~s~~--~~~ 58 (365)
T 3k17_A 4 KNKLQVKIPGKLYVAGEYAVVESGHTAILTAVNRYITLTLEDSERNE-----------------------LWIPH--YEN 58 (365)
T ss_dssp -CCEEEEEEEEEEEECTTGGGSTTCEEEEEEEEEEEEEEEEECSSCE-----------------------EECTT--CSS
T ss_pred EEEEEEEECCEEEEECCCEEECCCCEEEEEECCCCEEEEEEECCCCE-----------------------EEECC--CCC
T ss_conf 36899995516999524578069987999982384899999779867-----------------------99568--886
Q ss_pred CCCCEECCCCCCCCCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHH---HHCCCCCCCEEEEEEECCCC----CCCC
Q ss_conf 9982004687534699975165320125889999714799999999999---91997899889999808999----9999
Q 002674 574 RGPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMT---ELGVRFEDSISMLVSSAVPE----GKGV 646 (894)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~y~~g~~~~~~~---~~g~~~~~G~~i~i~s~iP~----g~GL 646 (894)
.+++++++. + ..+...| +|+++++..+.+ ..|... .|+++.+.|+||. ++||
T Consensus 59 ---~~~~~~~~~------~----------~~~~~~~-~yv~~~i~~~~~~~~~~g~~~-~g~~i~i~s~iP~~~g~~~GL 117 (365)
T 3k17_A 59 ---PVSWPIGGE------L----------KPDGEHW-TFTAEAINIATTFLKSEGIEL-TPVKMVIETELIDQSGAKYGL 117 (365)
T ss_dssp ---CBCCCTTSC------C----------CCSCGGG-HHHHHHHHHHHHHHHHTTCCC-CCEEEEEEESSBCTTSCBCSS
T ss_pred ---CEEEECCCC------C----------CCCCCHH-HHHHHHHHHHHHHHHHCCCCC-CCEEEEEECCCCCCCCCCCCC
T ss_conf ---236640567------7----------7777757-999999999999998639998-887999974799878888751
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCEEEEEE-EC--------------
Q ss_conf 848999999999999992999999999999999997260899971256885317778089998-11--------------
Q 002674 647 SSSASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMV-CQ-------------- 711 (894)
Q Consensus 647 sSSAAl~va~~~al~~~~~~~l~~~~la~~a~~~E~~~~G~~~G~mDq~~s~~G~~~~~~~~d-~~-------------- 711 (894)
|||||++||++.|++.+++.++++++++++++.+|+.++| ++|+|||+++++|+ ++++. +.
T Consensus 118 gSSaa~~va~~~al~~~~~~~l~~~~l~~~a~~~E~~~~g-~~~g~D~~~~~~Gg---~~~~~~~~~~~~~~~~~~~~l~ 193 (365)
T 3k17_A 118 GSSAAATVAVINALMTKFYPEISMLKKFKLAALSHLVVQG-NGSCGDIASCMYGG---WIAYTTFDQEWVKHRLAYKSLE 193 (365)
T ss_dssp CHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHS-SCCSHHHHHHHHCS---EEEEECCCHHHHHHHHTTSCHH
T ss_pred CHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCC-CCCCCCHHHHHCCC---EEEEECCCHHHHHHHCCCCHHH
T ss_conf 0899999999999999847999999999999999998678-98741278776088---7999327878865320110056
Q ss_pred --------CCCEEEEEECCCCEEEEEEECCCCCCCC
Q ss_conf --------8722488316998299999699976568
Q 002674 712 --------PAELLGVVEIPSHIRFWGIDSGIRHSVG 739 (894)
Q Consensus 712 --------~~~~~~~v~lp~~~~~vi~~Sgv~~~~~ 739 (894)
...+ ++++++.+ .++++||++++++.
T Consensus 194 ~l~~~~w~~~~~-~~l~~~~~-~lll~~t~~~~sT~ 227 (365)
T 3k17_A 194 WFMKEPWPMLQI-ETLEEPVP-TFSVGWTGTPVSTG 227 (365)
T ss_dssp HHHHSCCTTCEE-EEECCCSS-EEEEEECSCCCCHH
T ss_pred HHHCCCCCCCCE-EECCCCCC-CEEEEECCCCCCHH
T ss_conf 664267877603-66468855-37999789965459
No 8
>1kvk_A MK, mevalonate kinase; RMK, ATP, GHMP, transferase; HET: ATP; 2.40A {Rattus norvegicus} SCOP: d.14.1.5 d.58.26.3 PDB: 2r42_A* 2r3v_A
Probab=1.00 E-value=1 Score=240.19 Aligned_cols=211 Identities=18% Similarity=0.205 Sum_probs=148.1
Q ss_pred CEEEEECCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEEECCCCHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCC
Q ss_conf 61899837521232363323897231232355259999965885012445542114789999998189984366658999
Q 002674 496 EIFVARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQIVSYGSELSNRG 575 (894)
Q Consensus 496 ~~~~~~APGRv~LiGEH~Dy~Gg~vl~~aI~~~~~vav~~~~d~~~~l~~~~~~~~~~~~~~~~~~i~i~s~~~~~~~~~ 575 (894)
++++++|||||||+|||+||+|++||++||++++++.+++++++++++...+ .. .
T Consensus 4 ~~~~~~APgrv~L~Geh~d~~g~~~l~~ai~~~~~v~v~~~~~~~i~i~~~~-----------~~-~------------- 58 (395)
T 1kvk_A 4 EVLLVSAPGKVILHGEHAVVHGKVALAVALNLRTFLVLRPQSNGKVSLNLPN-----------VG-I------------- 58 (395)
T ss_dssp SCEEEEEEEEEEEECTTGGGGTCCEEEEEEEEEEEEEEEECSSSEEEEEETT-----------TT-E-------------
T ss_pred CCEEEEECEEEEEECCCEEEECCEEEEEEEECCEEEEEEECCCCEEEEECCC-----------CC-C-------------
T ss_conf 7589993717999667834679776661700658999997799748997378-----------78-4-------------
Q ss_pred CCEECCCCCCCCC----CCC-----CCHHHHHCCCCCCCCCCHHHHH--HHH---HHHHHHHHCCC-CCCCEEEEEEECC
Q ss_conf 8200468753469----997-----5165320125889999714799--999---99999991997-8998899998089
Q 002674 576 PTFDMDLSDFMDE----GKP-----MSYEKAKKYFDTNPSQKWAAYV--AGT---ILVLMTELGVR-FEDSISMLVSSAV 640 (894)
Q Consensus 576 ~~~~~~~~~~~~~----~~~-----~~~~~~~~~~~~~~~~~W~~y~--~g~---~~~~~~~~g~~-~~~G~~i~i~s~i 640 (894)
..+++++++... +.+ +..+.....-.......|.+|+ .++ +..+....+.. ...|+++.+.|+|
T Consensus 59 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~~~~~~g~~i~i~s~i 137 (395)
T 1kvk_A 59 -KQVWDVATLQLLDTGFLEQGDVPAPTLEQLEKLKKVAGLPRDCVGNEGLSLLAFLYLYLAICRKQRTLPSLDIMVWSEL 137 (395)
T ss_dssp -EEEEEHHHHHTSCC----------------CHHHHHHTSSCCCSCTTHHHHHHHHHHHHHHHTTSSSCCCEEEEEEESS
T ss_pred -EEEEEHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECC
T ss_conf -2787767602233034555654322689999998874245643113677999999999997352157888799998059
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHCC-----CCC-------H---HHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCEE
Q ss_conf 99999984899999999999999299-----999-------9---99999999999726089997125688531777808
Q 002674 641 PEGKGVSSSASVEVASMSAIAAAHGL-----NIH-------P---RDLALLCQKVENHIVGAPCGVMDQMASACGEANKL 705 (894)
Q Consensus 641 P~g~GLsSSAAl~va~~~al~~~~~~-----~l~-------~---~~la~~a~~~E~~~~G~~~G~mDq~~s~~G~~~~~ 705 (894)
|.|+|||||||++||++.|++.+++. +++ + .+++++|+.+|+.++|.+||+ ||+++++|+ +
T Consensus 138 P~g~GLGSSaA~~va~~~al~~l~~~~~~~~~l~~~~~~~~~~~l~~l~~~A~~~E~~~~G~~sG~-D~~~~~~Gg---~ 213 (395)
T 1kvk_A 138 PPGAGLGSSAAYSVCVAAALLTACEEVTNPLKDRGSIGSWPEEDLKSINKWAYEGERVIHGNPSGV-DNSVSTWGG---A 213 (395)
T ss_dssp CTTSSSCHHHHHHHHHHHHHHHHTTSSCCGGGGCCSEECCCHHHHHHHHHHHHHHHHHHHSSCCSH-HHHHHHHCS---E
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHEEECCCCCC-CHHHHHHCC---E
T ss_conf 988885289999999999999982756664334533344450369999999998520673688870-467743155---2
Q ss_pred EEEEECCCCEEEEEECCCCEEEEEEECCCCCCCC
Q ss_conf 9998118722488316998299999699976568
Q 002674 706 LAMVCQPAELLGVVEIPSHIRFWGIDSGIRHSVG 739 (894)
Q Consensus 706 ~~~d~~~~~~~~~v~lp~~~~~vi~~Sgv~~~~~ 739 (894)
+++ ++..+ +++++++++.|++++|++++++.
T Consensus 214 ~~~--~~~~~-~~l~~~~~~~~vl~~~~~~~~T~ 244 (395)
T 1kvk_A 214 LRY--QQGKM-SSLKRLPALQILLTNTKVPRSTK 244 (395)
T ss_dssp EEE--SSSCE-EECSCCCCEEEEEEECCCCCCHH
T ss_pred EEE--CCCCC-EECCCCCCCEEEEEECCCCCCHH
T ss_conf 797--07984-02368998479999899988669
No 9
>4amg_A Snogd; transferase, polyketide biosynthesis, GT1 family, nogalamyci; HET: MLY; 2.59A {Streptomyces nogalater} PDB: 4an4_A* 4amb_A*
Probab=1.00 E-value=1 Score=239.26 Aligned_cols=336 Identities=16% Similarity=0.089 Sum_probs=191.2
Q ss_pred CCEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCCC----CCCCCCC-
Q ss_conf 85199998428899320899999999999899919999389973342334789436841014778644----4543447-
Q 002674 13 SKHLVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDCGAVQ----ADALTVD- 87 (894)
Q Consensus 13 m~~l~il~~v~~~G~GHv~r~laLA~~L~~rGh~V~i~~~~~~~~~~~~i~~p~~~~~~~~~~~g~~~----~~~~~~d- 87 (894)
-+.|+|||+ +.++.||++|+++||++|+++||+|+|++... +..... .+..+.....+..... ......+
T Consensus 20 ~~~MRIL~~-~~p~~GHv~P~l~LA~~L~~rGh~Vt~~t~~~---~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (400)
T 4amg_A 20 FQSMRALFI-TSPGLSHILPTVPLAQALRALGHEVRYATGGD---IRAVAE-AGLCAVDVSPGVNYAKLFVPDDTDVTDP 94 (400)
T ss_dssp -CCCEEEEE-CCSSHHHHGGGHHHHHHHHHTTCEEEEEECSS---THHHHT-TTCEEEESSTTCCSHHHHSCCC------
T ss_pred CCCCEEEEE-CCCCHHHHHHHHHHHHHHHHCCCEEEEEECCC---HHHHHH-CCCEEEECCCCHHHHHHCCCCCCCCCCC
T ss_conf 899818998-99846089999999999998799899993863---566886-5873575588630766304545444553
Q ss_pred ---HHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCEEEECC-CHHHHHHHHHHCCCEEEEECCCHH--HHHHHHHHHHC
Q ss_conf ---799999999982020577699999998519995999979-615999999819939999648515--78888885205
Q 002674 88 ---RLASLEKYSETAVAPRKSILKDEVEWLNSIKADLVVSDV-VPVACRAAADAGIRSVCVTNFSWD--FIYAEYVMAAG 161 (894)
Q Consensus 88 ---~~~~l~~~~~~~~~~~~~~~~~~~~~L~~~kPDlVVsD~-~~~a~~aA~~lgIP~V~is~~~~~--~~~~~~~~~~~ 161 (894)
.......+...+............+.+++++||+||+|. .+++..+|+.+|+|.+.+...... ..+.....
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pD~Vv~d~~~~~~~~~A~~~gip~~~~~~~~~~~~~~~~~~~~--- 171 (400)
T 4amg_A 95 MHSEGLGEGFFAEMFARVSAVAVDGALRTARSWRPDLVVHTPTQGAGPLTAAALQLPCVELPLGPADSEPGLGALIR--- 171 (400)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHCCSEEEECTTCTHHHHHHHHTTCCEEECCSSTTTCCHHHHHHHH---
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCCCCEEECCCCCCCCCCHHHHHH---
T ss_conf 10023447899999999999999999999986299889977633899999998099822414665433442036789---
Q ss_pred CCHHHHHHHHHHHCCC-----CCEEEEC-CCC--CCCCC---CCCEEECCCCCCCCCCCHHHHHHHHCCCCCCCEEEEEC
Q ss_conf 4348999999962043-----3303405-999--98899---88616548323357669589999719999982999983
Q 002674 162 HHHRSIVWQIAEDYSH-----CEFLIRL-PGY--CPMPA---FRDVIDVPLVVRRLHKSRKEVRKELGIEDDVKLLILNF 230 (894)
Q Consensus 162 ~~~~~i~~~l~~~y~~-----~d~l~~~-p~~--~~~p~---~~~v~~vp~~~~~~~~~~~e~r~~lg~~~~~p~Vlvs~ 230 (894)
.........+.. ....... +.. ...+. .+........... ......+++...+++++||+++
T Consensus 172 ----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~v~vs~ 244 (400)
T 4amg_A 172 ----RAMSKDYERHGVTGEPTGSVRLTTTPPSVEALLPEDRRSPGAWPMRYVPYN---GGAVLPDWLPPAAGRRRIAVTL 244 (400)
T ss_dssp ----HHTHHHHHHTTCCCCCSCEEEEECCCHHHHHTSCGGGCCTTCEECCCCCCC---CCEECCTTCSCCTTCCEEEECC
T ss_pred ----HHHHHHHHHHCCCCCCCCCHHHCCCCCHHHCCCCCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCEEEEEC
T ss_conf ----999989998288755430011024674021047400257765676653334---6556751223347985799968
Q ss_pred CCCCCH---H----HHHHHHCCCCCEEEEE-CCCCC----CCCCCEEECCCCCCHHHHHHHCCEEEECCCHHHHHHHHHC
Q ss_conf 988870---4----2687627899499995-89999----9999959878999978997415789946882589999985
Q 002674 231 GGQPAG---W----KLKEEYLPSGWKCLVC-GASDS----QLPPNFIKLPKDAYTPDFMAASDCMLGKIGYGTVSEALAY 298 (894)
Q Consensus 231 Gs~~~~---~----~l~~~Ll~~~~~~vv~-G~~~~----~lp~nv~v~~~~~~vp~lLa~ad~~I~~~G~~t~~Eal~~ 298 (894)
||.... . .+.+.+...++.+++. +.... .+++|+.+.+|.+ +.++|+++|+||+|||++|++|++++
T Consensus 245 Gs~~~~~~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~v~~~~~~p-~~~lL~~~~~~v~h~G~~s~~Eal~~ 323 (400)
T 4amg_A 245 GSIDALSGGIAKLAPLFSEVADVDAEFVLTLGGGDLALLGELPANVRVVEWIP-LGALLETCDAIIHHGGSGTLLTALAA 323 (400)
T ss_dssp CSCC--CCSSSTTHHHHHHGGGSSSEEEEECCTTCCCCCCCCCTTEEEECCCC-HHHHHTTCSEEEECCCHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCEEEEEECC-HHHHHHHHHHEECCCCCCHHHHHHHH
T ss_conf 86023676399999999986506936999946765432236898779975459-89973013512316775489999995
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHHCCCCCC---------CCCCHHHHHHHHHHH
Q ss_conf 99599980999986489999999859489971588890009999999971699966---------899989999999999
Q 002674 299 KLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLKPCYE---------GGINGGEVAAHILQE 369 (894)
Q Consensus 299 GvP~i~ip~~~~~eq~~na~~l~~~G~g~~~~~~~~~~~~l~~~l~~ll~~~~~~~---------~~~~g~~~~a~~i~~ 369 (894)
|+|+|++| .+.||+.|++++++.|+|+.++..+++ .++|+++++++.... ....++.++|..|++
T Consensus 324 GvP~v~~P--~~~dQ~~na~~v~~~G~g~~l~~~~~~----~~al~~lL~d~~~r~~a~~l~~~~~~~~~~~~~a~~le~ 397 (400)
T 4amg_A 324 GVPQCVIP--HGSYQDTNRDVLTGLGIGFDAEAGSLG----AEQCRRLLDDAGLREAALRVRQEMSEMPPPAETAAXLVA 397 (400)
T ss_dssp TCCEEECC--C---CHHHHHHHHHHTSEEECCTTTCS----HHHHHHHHHCHHHHHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred CCCEEEEC--CCCCHHHHHHHHHHCCCEEECCCCCCH----HHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 99999955--745479999999988988986888752----999999975999999999999998769999999999998
Q ss_pred H
Q ss_conf 9
Q 002674 370 T 370 (894)
Q Consensus 370 ~ 370 (894)
+
T Consensus 398 l 398 (400)
T 4amg_A 398 L 398 (400)
T ss_dssp H
T ss_pred H
T ss_conf 5
No 10
>2pg9_A Phosphomevalonate kinase; GHMP kinase superfamily, transferase; HET: PMV ANP; 1.90A {Streptococcus pneumoniae} PDB: 1k47_A* 3gon_A*
Probab=1.00 E-value=1 Score=236.33 Aligned_cols=188 Identities=19% Similarity=0.125 Sum_probs=147.8
Q ss_pred EEEEECCCCCCCCCCCC-CCCCCEEECCCCCCCEEEEEEECCCCHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCC
Q ss_conf 18998375212323633-23897231232355259999965885012445542114789999998189984366658999
Q 002674 497 IFVARAPGRLDVMGGIA-DYSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQIVSYGSELSNRG 575 (894)
Q Consensus 497 ~~~~~APGRv~LiGEH~-Dy~Gg~vl~~aI~~~~~vav~~~~d~~~~l~~~~~~~~~~~~~~~~~~i~i~s~~~~~~~~~ 575 (894)
++.++|||||||+|||+ ||+|++||++||+++++++++++++ ++ |.|.+
T Consensus 3 mi~~~aPgkv~L~GeH~v~y~G~~~l~~Ai~~~~~v~v~~~~~--~~---------------------i~s~~------- 52 (337)
T 2pg9_A 3 MIAVKTCGKLYWAGEYAILEPGQLALIKDIPIYMRAEIAFSDS--YR---------------------IYSDM------- 52 (337)
T ss_dssp CEEEEEEEEEEEECTTGGGSTTCEEEEEEEEEEEEEEEEECSS--CE---------------------EEETT-------
T ss_pred EEEEEECCEEEEECCCEEECCCCEEEEEECCCCEEEEEEECCC--EE---------------------EECCC-------
T ss_conf 6999617348995235682599879999810659999996794--79---------------------96589-------
Q ss_pred CCEECCCCCCCCCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH---HCCCCCCCEEEEEEECCCCC---CCCCHH
Q ss_conf 820046875346999751653201258899997147999999999999---19978998899998089999---999848
Q 002674 576 PTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTE---LGVRFEDSISMLVSSAVPEG---KGVSSS 649 (894)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~y~~g~~~~~~~~---~g~~~~~G~~i~i~s~iP~g---~GLsSS 649 (894)
+...++. .+...| +|+.+++..+.+. .|... .|+++.+.|+||.| +|||||
T Consensus 53 --~~~~~~~-------------------~~~~~~-~~v~~~i~~~~~~~~~~g~~~-~g~~i~i~s~iP~~g~k~GLgSS 109 (337)
T 2pg9_A 53 --FDFAVDL-------------------RPNPDY-SLIQETIALMGDFLAVRGQNL-RPFSLAIYGKMEREGKKFGLGSS 109 (337)
T ss_dssp --SSSCBCS-------------------SCCTTT-HHHHHHHHHHHHHHHHTTCCC-CCEEEEEECCSEETTEECSSCHH
T ss_pred --CCCEEEE-------------------CCCCCC-HHHHHHHHHHHHHHHHCCCCC-CCEEEEEECCCCCCCCCCCCCHH
T ss_conf --8850463-------------------578772-799999999999998618998-88799997169999888622099
Q ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCEEEEEEEC------------------
Q ss_conf 99999999999999299999999999999999726089997125688531777808999811------------------
Q 002674 650 ASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQ------------------ 711 (894)
Q Consensus 650 AAl~va~~~al~~~~~~~l~~~~la~~a~~~E~~~~G~~~G~mDq~~s~~G~~~~~~~~d~~------------------ 711 (894)
||++||++.|++.+++.++++++++++|+++|. ++|.+||+|||+++++|+......+++.
T Consensus 110 aa~~va~~~al~~~~~~~l~~~~l~~la~~~E~-~~~~~~~~~D~~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 188 (337)
T 2pg9_A 110 GSVVVLVVKALLALYNLSVDQNLLFKLTSAVLL-KRGDNGSMGDLACIAAEDLVLYQSFDRQKVAAWLEEENLATVLERD 188 (337)
T ss_dssp HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH-HTTCCSCSHHHHHHHHTSCEEEECCCHHHHHHHHHHSCHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH-HHCCCCCHHHHHHHHHCCEEEEECCCHHHHHHHHCCCCHHHHCCCC
T ss_conf 999999999999982899999999999999999-8589987799999880787999648867743220122034430466
Q ss_pred -CCCEEEEEECCCCEEEEEEECCCCCCCC
Q ss_conf -8722488316998299999699976568
Q 002674 712 -PAELLGVVEIPSHIRFWGIDSGIRHSVG 739 (894)
Q Consensus 712 -~~~~~~~v~lp~~~~~vi~~Sgv~~~~~ 739 (894)
+..+ ++++++.++.|++++|++++++.
T Consensus 189 ~~~~~-~~l~~~~~~~lvl~~~~~~~~T~ 216 (337)
T 2pg9_A 189 WGFSI-SQVKPTLECDFLVGWTKEVAVSS 216 (337)
T ss_dssp CCCEE-EECCCCSCCEEEEEECCCCCCHH
T ss_pred CCCCE-EEECCCCCCEEEEEECCCCCCHH
T ss_conf 66613-66047888659999889964469
Done!