Query 002675
Match_columns 894
No_of_seqs 522 out of 2732
Neff 10.2
Searched_HMMs 13730
Date Tue Mar 26 22:24:54 2013
Command hhsearch -i /local_scratch/syshi/lefta3m2/002675.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H2_72-76//hhsearch_scop/002675hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1jm7a_ g.44.1.1 (A:) brca1 RI 99.1 5E-11 3.7E-15 98.7 5.3 67 827-893 9-77 (103)
2 d1rmda2 g.44.1.1 (A:1-86) V(D) 99.0 6.4E-11 4.7E-15 97.8 2.2 54 838-891 22-75 (86)
3 d1fbva4 g.44.1.1 (A:356-434) C 98.9 1.7E-09 1.3E-13 86.6 6.1 55 838-892 22-76 (79)
4 d1jm7b_ g.44.1.1 (B:) bard1 RI 98.8 1.1E-09 7.7E-14 88.3 3.3 62 829-893 12-74 (97)
5 d1t1ha_ g.44.1.2 (A:) E3 ubiqu 98.8 1.6E-09 1.2E-13 86.9 4.2 58 836-893 5-62 (78)
6 d2c2la2 g.44.1.2 (A:225-304) S 98.8 1.2E-09 8.6E-14 87.9 2.6 58 836-893 4-61 (80)
7 d1g25a_ g.44.1.1 (A:) TFIIH Ma 98.6 9.4E-09 6.9E-13 80.8 2.6 57 838-894 2-63 (65)
8 d2baya1 g.44.1.2 (A:1-56) Pre- 98.5 7.9E-09 5.8E-13 81.4 1.4 53 840-893 1-54 (56)
9 d1wgma_ g.44.1.2 (A:) Ubiquiti 98.5 2.8E-08 2.1E-12 77.0 3.8 60 833-893 16-76 (98)
10 d1bora_ g.44.1.1 (A:) Acute pr 98.4 8.4E-08 6.1E-12 73.3 3.1 49 838-890 5-53 (56)
11 d1chca_ g.44.1.1 (A:) Immediat 98.3 8.9E-08 6.5E-12 73.2 2.6 46 840-886 6-52 (68)
12 d1ur6b_ g.44.1.1 (B:) Not-4 N- 98.3 1.6E-07 1.2E-11 71.2 3.8 48 840-887 1-52 (52)
13 d1v87a_ g.44.1.1 (A:) Deltex p 98.3 2.5E-07 1.8E-11 69.7 3.3 49 840-888 26-96 (114)
14 d1iyma_ g.44.1.1 (A:) EL5 RING 98.0 1.6E-06 1.2E-10 63.3 3.9 48 836-884 2-53 (55)
15 d3dplr1 g.44.1.1 (R:19-106) RI 98.0 2.1E-06 1.5E-10 62.4 3.4 46 840-886 22-85 (88)
16 d1vyxa_ g.44.1.3 (A:) IE1B pro 97.4 6.6E-05 4.8E-09 50.6 3.6 49 838-886 5-59 (60)
17 d1wima_ g.44.1.1 (A:) UbcM4-in 97.1 9.2E-05 6.7E-09 49.5 2.3 47 838-884 4-60 (94)
18 d2cs3a1 g.44.1.3 (A:8-87) Prot 90.5 0.12 8.4E-06 25.1 3.6 35 838-872 7-45 (80)
19 d1zbdb_ g.50.1.1 (B:) Effector 90.2 0.12 8.5E-06 25.1 3.3 44 839-882 48-99 (124)
20 d2fiya1 e.59.1.1 (A:19-308) Fd 77.8 0.13 9.8E-06 24.6 -1.0 46 839-885 164-215 (290)
21 d1weoa_ g.44.1.1 (A:) Cellulos 75.1 1.3 9.5E-05 16.9 4.8 49 840-888 17-72 (93)
22 d1z60a1 g.49.1.2 (A:328-386) T 71.2 1.4 0.0001 16.6 2.9 42 838-880 14-58 (59)
23 d1y02a2 g.50.1.1 (A:20-70) Rif 59.4 0.71 5.2E-05 19.0 -0.5 40 841-881 2-45 (51)
24 d1joca1 g.50.1.1 (A:1348-1411) 47.9 3.6 0.00027 13.4 1.6 33 839-871 8-44 (64)
25 d1dvpa2 g.50.1.1 (A:149-220) H 46.3 3.1 0.00022 13.9 1.0 31 840-870 14-48 (72)
26 d1vfya_ g.50.1.1 (A:) vps27p p 44.7 4.2 0.0003 12.9 1.6 31 840-870 6-40 (67)
27 d2gmga1 a.4.5.82 (A:1-105) Hyp 40.0 4.9 0.00035 12.4 1.9 33 849-887 65-97 (105)
28 d1wfpa_ g.80.1.1 (A:) Zinc fin 37.2 5.3 0.00039 12.1 2.5 44 839-886 25-69 (74)
29 d1wfha_ g.80.1.1 (A:) Zinc fin 36.8 5.4 0.00039 12.0 2.4 47 838-888 14-61 (64)
30 d1wfka_ g.50.1.1 (A:) Zinc fin 34.0 5 0.00037 12.3 0.5 42 840-881 10-61 (88)
31 d1wfla_ g.80.1.1 (A:) Zinc fin 32.7 6.2 0.00045 11.6 0.9 43 839-885 25-68 (74)
32 d1wffa_ g.80.1.1 (A:) ANUBL1 ( 32.4 6.3 0.00046 11.5 2.6 46 840-889 26-73 (85)
33 d2dmda2 g.37.1.1 (A:8-33) Zinc 32.0 4.7 0.00034 12.5 0.1 15 875-889 2-16 (26)
34 d2jnea1 g.41.18.1 (A:1-71) Hyp 28.6 2.4 0.00017 14.8 -1.9 41 839-885 2-42 (71)
35 d1ibia2 g.39.1.3 (A:145-175) C 23.2 8.8 0.00064 10.4 0.6 29 840-868 1-30 (31)
36 d1nnqa2 g.41.5.1 (A:135-171) R 22.0 9.3 0.00067 10.2 1.4 25 853-885 7-31 (37)
37 d2ct7a1 g.44.1.4 (A:8-80) Ring 21.2 5.8 0.00042 11.8 -1.1 33 837-869 16-54 (73)
No 1
>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.09 E-value=5e-11 Score=98.67 Aligned_cols=67 Identities=30% Similarity=0.671 Sum_probs=55.4
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCC--CCCCCCCCCCCCCCCCCCC
Q ss_conf 998997742346543232346668960135888555757868631288--8766768777889965556
Q 002675 827 QKLQDEIKDCKAILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRH--RKCPGCGTAFGQSDVRFVK 893 (894)
Q Consensus 827 ~~l~ee~~~~~~~l~C~iC~~~~~~~v~~~C~H~fC~~C~~~~~~~~~--~~Cp~C~~~~~~~d~~~~~ 893 (894)
..++..+..+...+.||||.+.|.+|++++|||+||..||..|+.... ..||.||..|...++.+++
T Consensus 9 ~~~~~~~~~l~~~l~CpIC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~ 77 (103)
T d1jm7a_ 9 EEVQNVINAMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQEST 77 (103)
T ss_dssp HHHHHHHHHHHHHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCC
T ss_pred HHHHHHHHHCCCCCCCCCCCCHHCCEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHCCCCH
T ss_conf 999999996635849972182318918837998641678999999779998096988838755287578
No 2
>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=98.98 E-value=6.4e-11 Score=97.84 Aligned_cols=54 Identities=31% Similarity=0.638 Sum_probs=49.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 654323234666896013588855575786863128887667687778899655
Q 002675 838 AILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDVRF 891 (894)
Q Consensus 838 ~~l~C~iC~~~~~~~v~~~C~H~fC~~C~~~~~~~~~~~Cp~C~~~~~~~d~~~ 891 (894)
..+.|+||.+.+.+||+++|||+||..||..|++.+.++||.||.+|...|+.+
T Consensus 22 ~~l~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~p~~~~~l~~ 75 (86)
T d1rmda2 22 KSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLES 75 (86)
T ss_dssp HHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBC
T ss_pred CCCCCCCCCCCHHCCEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCC
T ss_conf 675995678444155526788763199999999648790703699799666359
No 3
>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.87 E-value=1.7e-09 Score=86.61 Aligned_cols=55 Identities=27% Similarity=0.610 Sum_probs=48.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 6543232346668960135888555757868631288876676877788996555
Q 002675 838 AILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDVRFV 892 (894)
Q Consensus 838 ~~l~C~iC~~~~~~~v~~~C~H~fC~~C~~~~~~~~~~~Cp~C~~~~~~~d~~~~ 892 (894)
....|+||++.++++++++|||+||..|+..|+..+...||+||..+...+...+
T Consensus 22 ~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~wl~~~~~~CP~Cr~~i~~~~~i~i 76 (79)
T d1fbva4 22 TFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEPIVV 76 (79)
T ss_dssp CTTBCTTTSSSBCCEECSSSCCEECHHHHHHHHHTTCCSCTTTCCCCCCCCCSSC
T ss_pred CCCCCCCCCCCCCCEEEECCCCEEEHHHHHHHHHHCCCCCCCCCCCCCCCCEEEC
T ss_conf 9899935897689969958999352999999999785818997958647766640
No 4
>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.80 E-value=1.1e-09 Score=88.28 Aligned_cols=62 Identities=24% Similarity=0.588 Sum_probs=50.9
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCC-CCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 89977423465432323466689601-358885557578686312888766768777889965556
Q 002675 829 LQDEIKDCKAILKCGVCFDRPKEVVI-TKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDVRFVK 893 (894)
Q Consensus 829 l~ee~~~~~~~l~C~iC~~~~~~~v~-~~C~H~fC~~C~~~~~~~~~~~Cp~C~~~~~~~d~~~~~ 893 (894)
....++.+...+.|+||.+.|.+||. ++|||+||..||..|+. .+||.||.++...++.+++
T Consensus 12 ~~~~l~~l~~~l~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~---~~CP~Cr~~~~~~~l~~n~ 74 (97)
T d1jm7b_ 12 SRAALDRLEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG---TGCPVCYTPAWIQDLKINR 74 (97)
T ss_dssp HHHHHHHHHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT---TBCSSSCCBCSCSSCCCCH
T ss_pred HHHHHHHHHHCCCCCCCCCHHHCCCEECCCCCCHHHHHHHHHHH---CCCCCCCCCCCHHHCCCCH
T ss_conf 79999962122899258722112746588999302999999985---3666227867655186058
No 5
>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=98.80 E-value=1.6e-09 Score=86.86 Aligned_cols=58 Identities=17% Similarity=0.318 Sum_probs=53.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 3465432323466689601358885557578686312888766768777889965556
Q 002675 836 CKAILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDVRFVK 893 (894)
Q Consensus 836 ~~~~l~C~iC~~~~~~~v~~~C~H~fC~~C~~~~~~~~~~~Cp~C~~~~~~~d~~~~~ 893 (894)
+-..+.||||+..|.+||+++|||+||..||..|+......||.|+.++...++.+++
T Consensus 5 iP~~l~CpIc~~~m~dPV~~~cgh~fc~~ci~~~~~~~~~~cP~~~~~l~~~~l~pN~ 62 (78)
T d1t1ha_ 5 FPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNY 62 (78)
T ss_dssp CSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECT
T ss_pred CCCCCCCCCCCCHHHCCEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHH
T ss_conf 9962799171812108337267774339999999998888788655637756562469
No 6
>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=98.77 E-value=1.2e-09 Score=87.91 Aligned_cols=58 Identities=16% Similarity=0.044 Sum_probs=52.2
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 3465432323466689601358885557578686312888766768777889965556
Q 002675 836 CKAILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDVRFVK 893 (894)
Q Consensus 836 ~~~~l~C~iC~~~~~~~v~~~C~H~fC~~C~~~~~~~~~~~Cp~C~~~~~~~d~~~~~ 893 (894)
+-..+.||||+..|++||+++|||+||..||..++..+...||.||.++...++.+++
T Consensus 4 iP~~l~CpIc~~l~~dPv~~~cGhtfc~~ci~~~l~~~~~~cP~c~~~l~~~~l~pN~ 61 (80)
T d2c2la2 4 IPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNL 61 (80)
T ss_dssp CCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECH
T ss_pred CCCCCCCCCCCCHHHHHCCCCCCCEECHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHH
T ss_conf 9700118583732340330588685638899999863776578756665423555199
No 7
>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.58 E-value=9.4e-09 Score=80.81 Aligned_cols=57 Identities=23% Similarity=0.545 Sum_probs=46.8
Q ss_pred CCCCCCCCCCCCC-----CCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 6543232346668-----96013588855575786863128887667687778899655569
Q 002675 838 AILKCGVCFDRPK-----EVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDVRFVKI 894 (894)
Q Consensus 838 ~~l~C~iC~~~~~-----~~v~~~C~H~fC~~C~~~~~~~~~~~Cp~C~~~~~~~d~~~~~~ 894 (894)
+...||||++.+. ..++++|||+||..||..|+....+.||+||.+|..++++..+|
T Consensus 2 dd~~CpIC~~~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~~CP~CR~~i~~~~~~~~~f 63 (65)
T d1g25a_ 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFRVQLF 63 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCCEEECC
T ss_pred CCCCCCCCCCEEECCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 98998708826003995679847637276488999985708197999986813045413377
No 8
>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=98.54 E-value=7.9e-09 Score=81.41 Aligned_cols=53 Identities=11% Similarity=0.237 Sum_probs=48.1
Q ss_pred CCCCCCCCCCCCCCCC-CCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 4323234666896013-58885557578686312888766768777889965556
Q 002675 840 LKCGVCFDRPKEVVIT-KCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDVRFVK 893 (894)
Q Consensus 840 l~C~iC~~~~~~~v~~-~C~H~fC~~C~~~~~~~~~~~Cp~C~~~~~~~d~~~~~ 893 (894)
|.|+||++.+.+||++ .|||+||..||..|+.. ...||+||.++...|+.++.
T Consensus 1 l~C~Ic~~~~~~Pv~~~~cGh~fc~~cI~~~l~~-~~~CP~c~~~l~~~dLipik 54 (56)
T d2baya1 1 MLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKD-TGNDPITNEPLSIEEIVEIV 54 (56)
T ss_dssp CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHH-HSBCTTTCCBCCGGGCEECC
T ss_pred CCCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHH-CCCCCCCCCCCCHHHCEECC
T ss_conf 9993678568865745789984559999998760-36798547818877536478
No 9
>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.52 E-value=2.8e-08 Score=77.05 Aligned_cols=60 Identities=12% Similarity=-0.005 Sum_probs=51.6
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCC-CCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 742346543232346668960135888-5557578686312888766768777889965556
Q 002675 833 IKDCKAILKCGVCFDRPKEVVITKCFH-LFCNPCIQRNLEIRHRKCPGCGTAFGQSDVRFVK 893 (894)
Q Consensus 833 ~~~~~~~l~C~iC~~~~~~~v~~~C~H-~fC~~C~~~~~~~~~~~Cp~C~~~~~~~d~~~~~ 893 (894)
+...-..+.||||...|.+||+++||| +||..||..|+. +...||.|+.++...++.++.
T Consensus 16 ~~~~P~~f~CPI~~~lm~dPV~~~~~~~ty~r~~I~~~l~-~~~~~P~~~~~l~~~~L~pN~ 76 (98)
T d1wgma_ 16 YADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLL-SDQTDPFNRSPLTMDQIRPNT 76 (98)
T ss_dssp CCSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTT-TSCBCTTTCSBCCTTTSEECH
T ss_pred HCCCCHHHCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHH-HCCCCCCCCCCCCCHHHCCHH
T ss_conf 1599077488673468877776235532014999999987-068766555666401120139
No 10
>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.37 E-value=8.4e-08 Score=73.34 Aligned_cols=49 Identities=22% Similarity=0.630 Sum_probs=41.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 65432323466689601358885557578686312888766768777889965
Q 002675 838 AILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDVR 890 (894)
Q Consensus 838 ~~l~C~iC~~~~~~~v~~~C~H~fC~~C~~~~~~~~~~~Cp~C~~~~~~~d~~ 890 (894)
..+.|+||++.|+++++++|||+||..|+.++ ...||+||..+......
T Consensus 5 ~~l~C~IC~~~~~~p~~lpCgH~fC~~Ci~~~----~~~CP~Cr~~~~~~~~~ 53 (56)
T d1bora_ 5 QFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS----GMQCPICQAPWPLGADT 53 (56)
T ss_dssp CCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS----SSSCSSCCSSSSCCSSC
T ss_pred CCCCCCCCCCCCCCCEEECCCCHHHHHHHHCC----CCCCCCCCCCCCCCCCC
T ss_conf 78898402941589789017777859988729----79684979966699898
No 11
>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}
Probab=98.34 E-value=8.9e-08 Score=73.15 Aligned_cols=46 Identities=28% Similarity=0.811 Sum_probs=40.0
Q ss_pred CCCCCCCCCCCCC-CCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 4323234666896-0135888555757868631288876676877788
Q 002675 840 LKCGVCFDRPKEV-VITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQ 886 (894)
Q Consensus 840 l~C~iC~~~~~~~-v~~~C~H~fC~~C~~~~~~~~~~~Cp~C~~~~~~ 886 (894)
-.|+||++.+.++ ++++|||+||..|+..|+.. .+.||.||..|..
T Consensus 6 d~C~IC~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~-~~~CP~CR~~i~~ 52 (68)
T d1chca_ 6 ERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQ-NPTCPLCKVPVES 52 (68)
T ss_dssp CCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHH-SCSTTTTCCCCCC
T ss_pred CCCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHH-CCCCCCCCCCHHH
T ss_conf 9994499396688388289991768999999982-9908887816372
No 12
>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.33 E-value=1.6e-07 Score=71.17 Aligned_cols=48 Identities=19% Similarity=0.528 Sum_probs=40.4
Q ss_pred CCCCCCCCCCCC----CCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 432323466689----601358885557578686312888766768777889
Q 002675 840 LKCGVCFDRPKE----VVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQS 887 (894)
Q Consensus 840 l~C~iC~~~~~~----~v~~~C~H~fC~~C~~~~~~~~~~~Cp~C~~~~~~~ 887 (894)
+.||||++.|.. +++++|||+||..|+..|+.....+||+||.+|...
T Consensus 1 leCpICl~~~~~~~~~~~~~~CgH~~c~~C~~~w~~~~~~~CP~CR~~~~~d 52 (52)
T d1ur6b_ 1 VECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPED 52 (52)
T ss_dssp CEETTTTEECCGGGTTCCSSSSSCCCCHHHHHHHTTTSCCBCTTTCCBCSCC
T ss_pred CCCCCCCHHHHCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 9995878235189825986699770455899999966489898657948899
No 13
>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=98.25 E-value=2.5e-07 Score=69.67 Aligned_cols=49 Identities=27% Similarity=0.596 Sum_probs=39.2
Q ss_pred CCCCCCCCCCCC------------------CCCCCCCCCCCHHHHHHHHCCCC----CCCCCCCCCCCCCC
Q ss_conf 432323466689------------------60135888555757868631288----87667687778899
Q 002675 840 LKCGVCFDRPKE------------------VVITKCFHLFCNPCIQRNLEIRH----RKCPGCGTAFGQSD 888 (894)
Q Consensus 840 l~C~iC~~~~~~------------------~v~~~C~H~fC~~C~~~~~~~~~----~~Cp~C~~~~~~~d 888 (894)
-.|+||++.+.. .++++|||+||..||..|+..+. .+||+||..|+...
T Consensus 26 ~~C~IC~e~l~~~~~~~~~~~~~~~~~~~~~~~~~CgH~FH~~Ci~~Wl~~~~~~~~~~CP~CR~~~~~~~ 96 (114)
T d1v87a_ 26 EDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKT 96 (114)
T ss_dssp CEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCS
T ss_pred CCCCCHHHEECCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCC
T ss_conf 53453010001344433543334545543468799999056999999999667578976655012206676
No 14
>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}
Probab=98.04 E-value=1.6e-06 Score=63.26 Aligned_cols=48 Identities=25% Similarity=0.605 Sum_probs=38.8
Q ss_pred CCCCCCCCCCCCCCCC---CC-CCCCCCCCCHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 3465432323466689---60-1358885557578686312888766768777
Q 002675 836 CKAILKCGVCFDRPKE---VV-ITKCFHLFCNPCIQRNLEIRHRKCPGCGTAF 884 (894)
Q Consensus 836 ~~~~l~C~iC~~~~~~---~v-~~~C~H~fC~~C~~~~~~~~~~~Cp~C~~~~ 884 (894)
+.+...|+||++.|.+ ++ +++|||+||..|+..|+.. ...||+||..+
T Consensus 2 ~ed~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~Wl~~-~~~CP~CR~~i 53 (55)
T d1iyma_ 2 MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS-HSTCPLCRLTV 53 (55)
T ss_dssp CCCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT-CCSCSSSCCCS
T ss_pred CCCCCCCEEECCCCCCCCEEEEECCCCCCCCHHHHHHHHHH-CCCCCCCCCEE
T ss_conf 88999984979001079889990898981059999999984-99387889784
No 15
>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.97 E-value=2.1e-06 Score=62.43 Aligned_cols=46 Identities=26% Similarity=0.501 Sum_probs=37.3
Q ss_pred CCCCCCCCCCCC------------------CCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 432323466689------------------60135888555757868631288876676877788
Q 002675 840 LKCGVCFDRPKE------------------VVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQ 886 (894)
Q Consensus 840 l~C~iC~~~~~~------------------~v~~~C~H~fC~~C~~~~~~~~~~~Cp~C~~~~~~ 886 (894)
-.|+||...+.+ +++++|||.||..||..|+.. ...||+||..|.-
T Consensus 22 d~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~~~~ 85 (88)
T d3dplr1 22 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWEF 85 (88)
T ss_dssp CCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT-CSBCSSSCSBCCE
T ss_pred CCCEECCCHHHCCCCCCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHH-CCCCCCCCCCCCC
T ss_conf 828783602418654323333213355687287265474657999999987-9968788972312
No 16
>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}
Probab=97.35 E-value=6.6e-05 Score=50.59 Aligned_cols=49 Identities=20% Similarity=0.543 Sum_probs=40.6
Q ss_pred CCCCCCCCCCCCCCCCCCCC-----CCCCCHHHHHHHHCC-CCCCCCCCCCCCCC
Q ss_conf 65432323466689601358-----885557578686312-88876676877788
Q 002675 838 AILKCGVCFDRPKEVVITKC-----FHLFCNPCIQRNLEI-RHRKCPGCGTAFGQ 886 (894)
Q Consensus 838 ~~l~C~iC~~~~~~~v~~~C-----~H~fC~~C~~~~~~~-~~~~Cp~C~~~~~~ 886 (894)
+...|+||++.+.++.+.+| +|.|+..|+..|+.. +...||+||..|..
T Consensus 5 d~~~C~IC~~~~~~~~~~~c~c~~c~h~~H~~Cl~~W~~~~~~~~CP~Cr~~~~~ 59 (60)
T d1vyxa_ 5 DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp SCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCCCCCCCCCCCCCCEEEECCCCCCCCEECHHHHHHHHHHCCCCCCCCCCCEEEC
T ss_conf 8999923886277751673145897788738999999710789889166971242
No 17
>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.12 E-value=9.2e-05 Score=49.48 Aligned_cols=47 Identities=21% Similarity=0.602 Sum_probs=35.3
Q ss_pred CCCCCCCCCCCCCC---CCCCCCCCCCCHHHHHHHHCCC-------CCCCCCCCCCC
Q ss_conf 65432323466689---6013588855575786863128-------88766768777
Q 002675 838 AILKCGVCFDRPKE---VVITKCFHLFCNPCIQRNLEIR-------HRKCPGCGTAF 884 (894)
Q Consensus 838 ~~l~C~iC~~~~~~---~v~~~C~H~fC~~C~~~~~~~~-------~~~Cp~C~~~~ 884 (894)
....|+||++.+.. +++++|||.||..|+..++.+. .-+||.|+.+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~ 60 (94)
T d1wima_ 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPK 60 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSS
T ss_pred CCCCCCCCCCCCCCCCEEEECCCCCEECCCCHHHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf 898493179836077557778999984881799999999851796655891999887
No 18
>d2cs3a1 g.44.1.3 (A:8-87) Protein c14orf4 (KIAA1865) {Human (Homo sapiens) [TaxId: 9606]}
Probab=90.49 E-value=0.12 Score=25.13 Aligned_cols=35 Identities=29% Similarity=0.807 Sum_probs=30.0
Q ss_pred CCCCCCCCCCCCCCCCCCCC----CCCCCHHHHHHHHCC
Q ss_conf 65432323466689601358----885557578686312
Q 002675 838 AILKCGVCFDRPKEVVITKC----FHLFCNPCIQRNLEI 872 (894)
Q Consensus 838 ~~l~C~iC~~~~~~~v~~~C----~H~fC~~C~~~~~~~ 872 (894)
.-+.|.+|.++..++....| +|-||+.|....++.
T Consensus 7 ~~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sik~ 45 (80)
T d2cs3a1 7 GPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKA 45 (80)
T ss_dssp CSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHH
T ss_pred CCEEEEEEHHHHCCCCEEECCCCCCCCEECCCCHHHHHH
T ss_conf 862342115462377367578876771262346899983
No 19
>d1zbdb_ g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=90.15 E-value=0.12 Score=25.12 Aligned_cols=44 Identities=20% Similarity=0.375 Sum_probs=28.9
Q ss_pred CCCCCCCCCCCCC-----CCCCCCCCCCCHHHHHHHHCC---CCCCCCCCCC
Q ss_conf 5432323466689-----601358885557578686312---8887667687
Q 002675 839 ILKCGVCFDRPKE-----VVITKCFHLFCNPCIQRNLEI---RHRKCPGCGT 882 (894)
Q Consensus 839 ~l~C~iC~~~~~~-----~v~~~C~H~fC~~C~~~~~~~---~~~~Cp~C~~ 882 (894)
.-.|++|...|.- .....||+.||..|....... ..+.|.+|..
T Consensus 48 ~~~C~~C~~~f~~~~~~~~~C~~C~~~~C~~C~~~~~~~~~~~~w~C~~C~k 99 (124)
T d1zbdb_ 48 VNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNRPHPVWLCKICLE 99 (124)
T ss_dssp SSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCCSSSSCCEEEHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCC
T ss_conf 9858345973347899988672478601158877756899997989806752
No 20
>d2fiya1 e.59.1.1 (A:19-308) FdhE homolog PA4809 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=77.76 E-value=0.13 Score=24.62 Aligned_cols=46 Identities=22% Similarity=0.296 Sum_probs=33.5
Q ss_pred CCCCCCCCCCCCCCCCCC----CC--CCCCHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 543232346668960135----88--855575786863128887667687778
Q 002675 839 ILKCGVCFDRPKEVVITK----CF--HLFCNPCIQRNLEIRHRKCPGCGTAFG 885 (894)
Q Consensus 839 ~l~C~iC~~~~~~~v~~~----C~--H~fC~~C~~~~~~~~~~~Cp~C~~~~~ 885 (894)
.-.||||...+.-.++.. =| |++|..|--.|.- ...+||.|+..-+
T Consensus 164 ~~~CPvCGs~P~~s~l~~~~~~~G~R~l~C~~C~teW~~-~R~~C~~Cg~~~~ 215 (290)
T d2fiya1 164 RTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHY-VRIKCSHCEESKH 215 (290)
T ss_dssp CSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEEC-CTTSCSSSCCCSC
T ss_pred CCCCCCCCCCCHHHEEECCCCCCCCEEEECCCCCCCCCC-CCCCCCCCCCCCC
T ss_conf 996999998021140323677788568878999885421-0666879999997
No 21
>d1weoa_ g.44.1.1 (A:) Cellulose synthase A catalytic subunit 7, IRX3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=75.08 E-value=1.3 Score=16.87 Aligned_cols=49 Identities=24% Similarity=0.556 Sum_probs=38.0
Q ss_pred CCCCCCCCCCCC-------CCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 432323466689-------6013588855575786863128887667687778899
Q 002675 840 LKCGVCFDRPKE-------VVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSD 888 (894)
Q Consensus 840 l~C~iC~~~~~~-------~v~~~C~H~fC~~C~~~~~~~~~~~Cp~C~~~~~~~d 888 (894)
..|.||.+...- +...-|+--.|.+|..--.......||.|.+.|....
T Consensus 17 q~CqiCGd~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCkt~Ykr~k 72 (93)
T d1weoa_ 17 QFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKRLR 72 (93)
T ss_dssp CBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCCCT
T ss_pred CHHHHCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHC
T ss_conf 22011546324178998888752369864507899998516702744487245525
No 22
>d1z60a1 g.49.1.2 (A:328-386) TFIIH p44 subunit cysteine-rich domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=71.24 E-value=1.4 Score=16.58 Aligned_cols=42 Identities=26% Similarity=0.546 Sum_probs=32.1
Q ss_pred CCCCCCCCCCCCCCCC---CCCCCCCCCHHHHHHHHCCCCCCCCCC
Q ss_conf 6543232346668960---135888555757868631288876676
Q 002675 838 AILKCGVCFDRPKEVV---ITKCFHLFCNPCIQRNLEIRHRKCPGC 880 (894)
Q Consensus 838 ~~l~C~iC~~~~~~~v---~~~C~H~fC~~C~~~~~~~~~~~Cp~C 880 (894)
....|..|...+++.. ...|++.||.+|---..+ .-..||.|
T Consensus 14 ~~~~C~gC~~~l~~~~~y~C~~C~~~FC~dCD~fiHe-~lh~CpgC 58 (59)
T d1z60a1 14 GERFCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHD-SLHSCPGC 58 (59)
T ss_dssp SCCEETTTTEECTTSEEECCTTTTCCBCHHHHHTTTT-TSCSSSTT
T ss_pred CCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCHHHHH-HHCCCCCC
T ss_conf 9987258788079986079967898513634444543-30279887
No 23
>d1y02a2 g.50.1.1 (A:20-70) Rififylin (FYVE-RING finger protein Sakura) {Human (Homo sapiens) [TaxId: 9606]}
Probab=59.42 E-value=0.71 Score=18.95 Aligned_cols=40 Identities=23% Similarity=0.443 Sum_probs=28.4
Q ss_pred CCCCCCCCCCC----CCCCCCCCCCCHHHHHHHHCCCCCCCCCCC
Q ss_conf 32323466689----601358885557578686312888766768
Q 002675 841 KCGVCFDRPKE----VVITKCFHLFCNPCIQRNLEIRHRKCPGCG 881 (894)
Q Consensus 841 ~C~iC~~~~~~----~v~~~C~H~fC~~C~~~~~~~~~~~Cp~C~ 881 (894)
.|.+|...|.- .....||++||..|...... ..|-|..|.
T Consensus 2 ~C~~C~~~F~~~~rkhhCr~CG~~fC~~Cs~~~~~-~~RvC~~C~ 45 (51)
T d1y02a2 2 SCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGN-GPRLCLLCQ 45 (51)
T ss_dssp CCTTTCCCCSSGGGCEECTTTCCEECGGGEEC-----CCEEHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCEECHHHH
T ss_conf 76142880069764744666986517220478999-883998576
No 24
>d1joca1 g.50.1.1 (A:1348-1411) Eea1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=47.90 E-value=3.6 Score=13.37 Aligned_cols=33 Identities=21% Similarity=0.474 Sum_probs=24.6
Q ss_pred CCCCCCCCCCCCC----CCCCCCCCCCCHHHHHHHHC
Q ss_conf 5432323466689----60135888555757868631
Q 002675 839 ILKCGVCFDRPKE----VVITKCFHLFCNPCIQRNLE 871 (894)
Q Consensus 839 ~l~C~iC~~~~~~----~v~~~C~H~fC~~C~~~~~~ 871 (894)
.-.|.+|...|.- .....||++||..|......
T Consensus 8 ~~~C~~C~~~F~~~~rrHHCR~CG~v~C~~Cs~~~~~ 44 (64)
T d1joca1 8 VQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKNAL 44 (64)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEEC
T ss_pred CCCCCCCCCCCCCCCCCCCHHHHCCEECCCCCCCCEE
T ss_conf 8968375974368765505054198415420478363
No 25
>d1dvpa2 g.50.1.1 (A:149-220) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=46.27 E-value=3.1 Score=13.95 Aligned_cols=31 Identities=19% Similarity=0.415 Sum_probs=23.5
Q ss_pred CCCCCCCCCCCC----CCCCCCCCCCCHHHHHHHH
Q ss_conf 432323466689----6013588855575786863
Q 002675 840 LKCGVCFDRPKE----VVITKCFHLFCNPCIQRNL 870 (894)
Q Consensus 840 l~C~iC~~~~~~----~v~~~C~H~fC~~C~~~~~ 870 (894)
-.|.+|...|.- .....||++||..|.....
T Consensus 14 ~~C~~C~~~F~~~~rrhhCr~CG~~~C~~C~~~~~ 48 (72)
T d1dvpa2 14 RVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQC 48 (72)
T ss_dssp SBCTTTCCBCCSSSCCEECTTTCCEECSTTSCEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEECHHHHCCCE
T ss_conf 74346899005754442442168964914629916
No 26
>d1vfya_ g.50.1.1 (A:) vps27p protein {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=44.71 E-value=4.2 Score=12.91 Aligned_cols=31 Identities=16% Similarity=0.360 Sum_probs=23.3
Q ss_pred CCCCCCCCCCCC----CCCCCCCCCCCHHHHHHHH
Q ss_conf 432323466689----6013588855575786863
Q 002675 840 LKCGVCFDRPKE----VVITKCFHLFCNPCIQRNL 870 (894)
Q Consensus 840 l~C~iC~~~~~~----~v~~~C~H~fC~~C~~~~~ 870 (894)
-.|.+|...|.- .....||.+||..|.....
T Consensus 6 ~~C~~C~~~F~~~~rkhhCr~CG~~fC~~Cs~~~~ 40 (67)
T d1vfya_ 6 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSSNSI 40 (67)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSCEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCE
T ss_conf 00115897126864224145579776466217927
No 27
>d2gmga1 a.4.5.82 (A:1-105) Hypothetical protein PF0610 {Pyrococcus furiosus [TaxId: 2261]}
Probab=40.01 E-value=4.9 Score=12.39 Aligned_cols=33 Identities=21% Similarity=0.473 Sum_probs=22.2
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 689601358885557578686312888766768777889
Q 002675 849 PKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQS 887 (894)
Q Consensus 849 ~~~~v~~~C~H~fC~~C~~~~~~~~~~~Cp~C~~~~~~~ 887 (894)
..-|.+.+||=+|= ..+. +..+||.|+.-+-..
T Consensus 65 v~Pp~CrkCGfvFr-----~~~k-kPSRCP~CKSE~Ie~ 97 (105)
T d2gmga1 65 IKPAQCRKCGFVFK-----AEIN-IPSRCPKCKSEWIEE 97 (105)
T ss_dssp ECCCBBTTTCCBCC-----CCSS-CCSSCSSSCCCCBCC
T ss_pred EECHHHHHCCCEEC-----CCCC-CCCCCCCCCCCCCCC
T ss_conf 83841523677605-----6689-999899888726359
No 28
>d1wfpa_ g.80.1.1 (A:) Zinc finger A20 and AN1 domains containing protein At1g12440 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=37.21 E-value=5.3 Score=12.08 Aligned_cols=44 Identities=14% Similarity=0.249 Sum_probs=29.3
Q ss_pred CCCCCCCCCCCCCCCCC-CCCCCCCHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 54323234666896013-5888555757868631288876676877788
Q 002675 839 ILKCGVCFDRPKEVVIT-KCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQ 886 (894)
Q Consensus 839 ~l~C~iC~~~~~~~v~~-~C~H~fC~~C~~~~~~~~~~~Cp~C~~~~~~ 886 (894)
..+|.+|.....-+.+. +||++||..+-.. -...|++.-...+.
T Consensus 25 k~RC~~C~KKl~l~~~~CrCg~~FC~~HR~p----e~H~C~fDyK~~gr 69 (74)
T d1wfpa_ 25 ATRCLSCNKKVGVTGFKCRCGSTFCGTHRYP----ESHECQFDFKGVAS 69 (74)
T ss_dssp CCBCSSSCCBCTTTCEECTTSCEECTTTCST----TTSCCCSCTTSCCC
T ss_pred CCCCHHCCCCCCCCCEECCCCCHHHHCCCCC----CCCCCCCCCHHCCC
T ss_conf 9827100881678862348877221211896----67689872321256
No 29
>d1wfha_ g.80.1.1 (A:) Zinc finger A20 and AN1 domains containing protein At2g36320 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=36.83 E-value=5.4 Score=12.04 Aligned_cols=47 Identities=19% Similarity=0.299 Sum_probs=31.3
Q ss_pred CCCCCCCCCCCCCCC-CCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 654323234666896-013588855575786863128887667687778899
Q 002675 838 AILKCGVCFDRPKEV-VITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSD 888 (894)
Q Consensus 838 ~~l~C~iC~~~~~~~-v~~~C~H~fC~~C~~~~~~~~~~~Cp~C~~~~~~~d 888 (894)
...+|.+|.....-+ +.-+||++||...... ....|++.-...|...
T Consensus 14 k~~RC~~C~KKl~l~~~~CrCg~~FC~~HR~p----e~H~CtfDyK~~Gr~~ 61 (64)
T d1wfha_ 14 RPNRCTVCRKRVGLTGFMCRCGTTFCGSHRYP----EVHGCTFDFKSAGSGP 61 (64)
T ss_dssp SCCCCTTTCCCCCTTCEECSSSCEECTTTCST----TTTTCCCCCSCCCCSC
T ss_pred CCCCCHHHCCCCCCEEEECCCCCEEHHHCCCC----CCCCCCCCCHHCCCCC
T ss_conf 89807210877364514626989701101897----6767987222226777
No 30
>d1wfka_ g.50.1.1 (A:) Zinc finger FYVE domain containing protein 19 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=33.99 E-value=5 Score=12.28 Aligned_cols=42 Identities=21% Similarity=0.490 Sum_probs=28.7
Q ss_pred CCCCCCCCCCCC----CCCCCCCCCCCHHHHHHHHCCC------CCCCCCCC
Q ss_conf 432323466689----6013588855575786863128------88766768
Q 002675 840 LKCGVCFDRPKE----VVITKCFHLFCNPCIQRNLEIR------HRKCPGCG 881 (894)
Q Consensus 840 l~C~iC~~~~~~----~v~~~C~H~fC~~C~~~~~~~~------~~~Cp~C~ 881 (894)
-.|.+|...|.- .....||.+||..|........ .|-|..|-
T Consensus 10 s~C~~C~~~Fs~~~rrhhCr~CG~vfC~~Cs~~~~~lp~~~~~~~RVC~~C~ 61 (88)
T d1wfka_ 10 SRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSALVPRAGNTQQKVCKQCH 61 (88)
T ss_dssp SBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEEEEETTTTSEEEEECHHHH
T ss_pred CCCCCCCCHHCCCCCCCCCCCCCHHHCHHHHCCCCCCCCCCCCCCEECHHHH
T ss_conf 8693519501354335334111954586873894606877898783888998
No 31
>d1wfla_ g.80.1.1 (A:) Zinc finger A20 domain containing protein 2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=32.71 E-value=6.2 Score=11.56 Aligned_cols=43 Identities=21% Similarity=0.319 Sum_probs=26.4
Q ss_pred CCCCCCCCCCCCCC-CCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 54323234666896-013588855575786863128887667687778
Q 002675 839 ILKCGVCFDRPKEV-VITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFG 885 (894)
Q Consensus 839 ~l~C~iC~~~~~~~-v~~~C~H~fC~~C~~~~~~~~~~~Cp~C~~~~~ 885 (894)
..+|.+|.....-. +.-+||++||...-.. -...|++.-..-+
T Consensus 25 ~~RC~~C~KKl~l~~~~CrCg~~FC~~HR~p----e~H~CtfDyK~~g 68 (74)
T d1wfla_ 25 KNRCFMCRKKVGLTGFDCRCGNLFCGLHRYS----DKHNCPYDYKAEA 68 (74)
T ss_dssp TTBCSSSCCBCGGGCEECTTSCEECSSSCST----TTTTCCCCGGGTS
T ss_pred CCCCHHHCCCCCCEEEECCCCCEEHHHCCCC----CCCCCCCCCCCCC
T ss_conf 8827323886342305706889721110897----6768888160146
No 32
>d1wffa_ g.80.1.1 (A:) ANUBL1 (AN1, ubiquitin-like, homolog) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=32.35 E-value=6.3 Score=11.52 Aligned_cols=46 Identities=15% Similarity=0.239 Sum_probs=30.9
Q ss_pred CCCCCCCCCCCC--CCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 432323466689--60135888555757868631288876676877788996
Q 002675 840 LKCGVCFDRPKE--VVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDV 889 (894)
Q Consensus 840 l~C~iC~~~~~~--~v~~~C~H~fC~~C~~~~~~~~~~~Cp~C~~~~~~~d~ 889 (894)
.+|.+|.....- .+.-+||++||..+...- ...|++.-...+...+
T Consensus 26 ~RC~~C~KKl~l~~~~~CrCg~~FC~~HR~pe----~H~CtfDyK~~~k~~L 73 (85)
T d1wffa_ 26 KHCFLCGKKTGLATSFECRCGNNFCASHRYAE----AHGCNYDYKSAGRRYL 73 (85)
T ss_dssp CBCSSSCCBCSSSSCEECTTCCEECTTTCSTG----GGTCCSCCSSSCCCCC
T ss_pred CCCHHCCCEECCCCCEECCCCCEEHHHCCCCC----CCCCCCCHHHHHHHHH
T ss_conf 83744079636885726589898011018976----7689760589889999
No 33
>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}
Probab=31.95 E-value=4.7 Score=12.48 Aligned_cols=15 Identities=40% Similarity=0.937 Sum_probs=12.1
Q ss_pred CCCCCCCCCCCCCCC
Q ss_conf 876676877788996
Q 002675 875 RKCPGCGTAFGQSDV 889 (894)
Q Consensus 875 ~~Cp~C~~~~~~~d~ 889 (894)
.+||+|+.+|+..|-
T Consensus 2 hkc~~c~kcfsrkdk 16 (26)
T d2dmda2 2 HKCEVCGKCFSRKDK 16 (26)
T ss_dssp CCBTTTTBCCCCHHH
T ss_pred CCCCHHHHHHCCHHH
T ss_conf 756413567602667
No 34
>d2jnea1 g.41.18.1 (A:1-71) Hypothetical protein YfgJ {Escherichia coli [TaxId: 562]}
Probab=28.63 E-value=2.4 Score=14.83 Aligned_cols=41 Identities=22% Similarity=0.417 Sum_probs=28.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 54323234666896013588855575786863128887667687778
Q 002675 839 ILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFG 885 (894)
Q Consensus 839 ~l~C~iC~~~~~~~v~~~C~H~fC~~C~~~~~~~~~~~Cp~C~~~~~ 885 (894)
.+.||.|.....- .=||.+|..|-..+.. ...||.|+.++.
T Consensus 2 ~~~CP~C~~eL~~----~~~~~~C~~C~~~~~~--~a~CPdC~~~Le 42 (71)
T d2jnea1 2 ELHCPQCQHVLDQ----DNGHARCRSCGEFIEM--KALCPDCHQPLQ 42 (71)
T ss_dssp CCBCSSSCSBEEE----ETTEEEETTTCCEEEE--EEECTTTCSBCE
T ss_pred CCCCCCCCCCCCC----CCCCEEHHHHHHHHEE--EEECCCCCCHHH
T ss_conf 7868875573102----5897761464010236--775886020899
No 35
>d1ibia2 g.39.1.3 (A:145-175) Cysteine-rich (intestinal) protein, CRP, CRIP {Japanese quail (Coturnix coturnix japonica), CRP2 [TaxId: 93934]}
Probab=23.19 E-value=8.8 Score=10.35 Aligned_cols=29 Identities=17% Similarity=0.565 Sum_probs=22.6
Q ss_pred CCCCCCCCCCCCC-CCCCCCCCCCHHHHHH
Q ss_conf 4323234666896-0135888555757868
Q 002675 840 LKCGVCFDRPKEV-VITKCFHLFCNPCIQR 868 (894)
Q Consensus 840 l~C~iC~~~~~~~-v~~~C~H~fC~~C~~~ 868 (894)
++|..|......+ +.-+=|.+||..|.-.
T Consensus 1 frca~cgk~lestt~adkdgeiyck~cyak 30 (31)
T d1ibia2 1 FRCAKCGKSLESTTLTEKEGEIYCKGCYAK 30 (31)
T ss_dssp EECSSSCCEECSSCSEEETTEEECHHHHHH
T ss_pred CCCCCCCCCCCCCEEECCCCCEEEEEEEEC
T ss_conf 940201686542065536873897564615
No 36
>d1nnqa2 g.41.5.1 (A:135-171) Rubrerythrin, C-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=22.04 E-value=9.3 Score=10.19 Aligned_cols=25 Identities=24% Similarity=0.449 Sum_probs=15.1
Q ss_pred CCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 013588855575786863128887667687778
Q 002675 853 VITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFG 885 (894)
Q Consensus 853 v~~~C~H~fC~~C~~~~~~~~~~~Cp~C~~~~~ 885 (894)
+..-|||++=. . ...+||+|+.+=+
T Consensus 7 ~C~vCG~i~~g-------~-~P~~CPvCg~~~~ 31 (37)
T d1nnqa2 7 ICPICGYTAVD-------E-APEYCPVCGAPKE 31 (37)
T ss_dssp ECTTTCCEEES-------C-CCSBCTTTCCBGG
T ss_pred ECCCCCCEECC-------C-CCCCCCCCCCCHH
T ss_conf 89989988618-------7-7884888998579
No 37
>d2ct7a1 g.44.1.4 (A:8-80) Ring finger protein 31 {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.24 E-value=5.8 Score=11.81 Aligned_cols=33 Identities=21% Similarity=0.422 Sum_probs=22.0
Q ss_pred CCCCCCCCCCCCCCC------CCCCCCCCCCCHHHHHHH
Q ss_conf 465432323466689------601358885557578686
Q 002675 837 KAILKCGVCFDRPKE------VVITKCFHLFCNPCIQRN 869 (894)
Q Consensus 837 ~~~l~C~iC~~~~~~------~v~~~C~H~fC~~C~~~~ 869 (894)
.....||-|...+.. .+...||+.||+.|-..|
T Consensus 16 ~~~k~CP~C~~~~~~~~~~~~~~C~~C~~~fC~~C~~~w 54 (73)
T d2ct7a1 16 PKFLWCAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQW 54 (73)
T ss_dssp CCEECCSSSCCCEECCCSCSCEECTTTCCEECSSSCSBC
T ss_pred CCCCCCCCCCCEEEECCCCCEEECCCCCCEECCCCCCCH
T ss_conf 798899999997687799998786998991770619601
Done!