Query 002676
Match_columns 894
No_of_seqs 567 out of 2732
Neff 10.3
Searched_HMMs 46136
Date Fri Mar 29 04:52:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002676.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002676hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0978 E3 ubiquitin ligase in 100.0 1.5E-46 3.1E-51 405.1 75.7 683 167-894 6-698 (698)
2 TIGR00606 rad50 rad50. This fa 99.9 1.1E-14 2.3E-19 182.0 86.9 718 72-840 301-1091(1311)
3 KOG0161 Myosin class II heavy 99.9 5.8E-14 1.3E-18 170.6 83.5 70 49-118 1077-1146(1930)
4 KOG0161 Myosin class II heavy 99.9 4.7E-12 1E-16 154.3 92.9 41 72-112 932-972 (1930)
5 TIGR02169 SMC_prok_A chromosom 99.8 1.8E-10 3.8E-15 146.8 89.4 22 800-821 953-974 (1164)
6 COG1196 Smc Chromosome segrega 99.8 4.5E-11 9.6E-16 147.9 80.3 22 802-823 946-967 (1163)
7 TIGR02168 SMC_prok_B chromosom 99.7 4E-09 8.8E-14 134.9 91.8 33 78-110 167-199 (1179)
8 TIGR02168 SMC_prok_B chromosom 99.7 2.8E-09 6.1E-14 136.4 88.6 15 174-188 176-190 (1179)
9 KOG4674 Uncharacterized conser 99.7 7.7E-09 1.7E-13 124.4 90.6 127 430-558 996-1133(1822)
10 KOG0996 Structural maintenance 99.7 5.5E-09 1.2E-13 118.4 83.0 75 779-855 1101-1181(1293)
11 KOG4674 Uncharacterized conser 99.7 1.3E-08 2.8E-13 122.5 91.8 72 567-638 1062-1135(1822)
12 COG1196 Smc Chromosome segrega 99.7 4.3E-09 9.3E-14 130.5 82.1 79 740-818 826-904 (1163)
13 PRK02224 chromosome segregatio 99.7 1.3E-09 2.9E-14 133.1 76.8 42 320-361 260-301 (880)
14 TIGR00606 rad50 rad50. This fa 99.7 4.8E-08 1.1E-12 122.9 97.7 106 709-816 986-1093(1311)
15 PF01576 Myosin_tail_1: Myosin 99.7 5.2E-18 1.1E-22 199.2 0.0 213 53-278 23-236 (859)
16 PRK02224 chromosome segregatio 99.7 1.1E-08 2.5E-13 125.0 78.9 45 320-364 253-297 (880)
17 PF10174 Cast: RIM-binding pro 99.6 6.6E-08 1.4E-12 110.3 76.8 57 224-280 109-165 (775)
18 PRK03918 chromosome segregatio 99.6 1.4E-07 3E-12 115.9 78.0 14 876-889 814-827 (880)
19 KOG0320 Predicted E3 ubiquitin 99.5 2.7E-15 5.7E-20 132.1 2.0 55 839-894 131-187 (187)
20 PRK03918 chromosome segregatio 99.5 1.2E-06 2.5E-11 107.8 79.0 13 533-545 461-473 (880)
21 KOG0996 Structural maintenance 99.5 5.6E-07 1.2E-11 102.6 80.4 52 760-811 960-1011(1293)
22 PF10174 Cast: RIM-binding pro 99.5 9.4E-07 2E-11 101.1 81.4 74 168-241 133-209 (775)
23 PF01576 Myosin_tail_1: Myosin 99.4 3.1E-14 6.7E-19 167.7 0.0 68 213-280 150-217 (859)
24 PLN03208 E3 ubiquitin-protein 99.3 3.9E-13 8.4E-18 123.2 3.5 57 837-893 16-87 (193)
25 KOG0978 E3 ubiquitin ligase in 99.3 6.4E-06 1.4E-10 91.5 74.3 142 213-359 53-194 (698)
26 KOG0933 Structural maintenance 99.3 8.2E-06 1.8E-10 91.8 75.4 94 319-412 330-432 (1174)
27 PF15227 zf-C3HC4_4: zinc fing 99.3 2.6E-12 5.6E-17 88.1 2.8 39 842-880 1-42 (42)
28 KOG0933 Structural maintenance 99.2 1.3E-05 2.8E-10 90.2 70.5 47 243-289 244-290 (1174)
29 smart00504 Ubox Modified RING 99.2 3.6E-12 7.8E-17 98.8 3.2 53 840-893 2-54 (63)
30 KOG0287 Postreplication repair 99.2 9.8E-13 2.1E-17 127.1 -0.2 58 836-894 20-77 (442)
31 PRK04778 septation ring format 99.2 1.5E-05 3.4E-10 91.1 56.9 256 355-659 81-339 (569)
32 PRK01156 chromosome segregatio 99.2 4.3E-05 9.3E-10 93.8 79.1 35 521-555 413-447 (895)
33 KOG0250 DNA repair protein RAD 99.2 2.4E-05 5.3E-10 89.8 57.9 22 801-822 867-888 (1074)
34 TIGR00599 rad18 DNA repair pro 99.2 5.9E-12 1.3E-16 131.2 3.4 62 832-894 19-80 (397)
35 KOG0317 Predicted E3 ubiquitin 99.2 7E-12 1.5E-16 120.3 3.3 55 838-893 238-292 (293)
36 KOG2164 Predicted E3 ubiquitin 99.2 6.3E-12 1.4E-16 130.5 2.5 56 839-894 186-245 (513)
37 KOG0823 Predicted E3 ubiquitin 99.2 7.4E-12 1.6E-16 116.6 2.6 57 837-893 45-103 (230)
38 PF13923 zf-C3HC4_2: Zinc fing 99.2 1.1E-11 2.3E-16 84.5 2.0 38 842-880 1-39 (39)
39 COG5432 RAD18 RING-finger-cont 99.2 7.3E-12 1.6E-16 118.4 1.4 56 835-891 21-76 (391)
40 KOG0976 Rho/Rac1-interacting s 99.2 2.5E-05 5.5E-10 85.2 59.7 26 859-884 633-658 (1265)
41 PF14835 zf-RING_6: zf-RING of 99.1 1.4E-11 3E-16 89.1 1.8 54 836-892 4-58 (65)
42 PRK04863 mukB cell division pr 99.1 0.00015 3.2E-09 90.3 77.0 39 470-508 584-622 (1486)
43 PF13920 zf-C3HC4_3: Zinc fing 99.1 4E-11 8.6E-16 87.1 2.5 45 840-885 3-48 (50)
44 PF04564 U-box: U-box domain; 99.1 5.3E-11 1.2E-15 94.0 2.0 55 839-893 4-58 (73)
45 KOG0962 DNA repair protein RAD 99.1 0.00014 3E-09 86.0 81.6 299 569-869 792-1117(1294)
46 KOG0964 Structural maintenance 99.0 0.00012 2.7E-09 82.3 66.3 48 503-550 418-465 (1200)
47 PHA02926 zinc finger-like prot 99.0 2.1E-10 4.6E-15 105.6 3.5 57 837-893 168-238 (242)
48 PF13639 zf-RING_2: Ring finge 99.0 9.7E-11 2.1E-15 82.5 0.8 40 841-881 2-44 (44)
49 PHA02929 N1R/p28-like protein; 99.0 2.5E-10 5.3E-15 110.6 3.4 48 838-886 173-228 (238)
50 PF14634 zf-RING_5: zinc-RING 99.0 2.7E-10 5.8E-15 79.8 2.5 41 841-882 1-44 (44)
51 PF00097 zf-C3HC4: Zinc finger 99.0 2.6E-10 5.6E-15 79.2 2.4 39 842-880 1-41 (41)
52 PF12128 DUF3584: Protein of u 99.0 0.00053 1.2E-08 85.9 80.9 36 327-362 354-389 (1201)
53 PF13445 zf-RING_UBOX: RING-ty 99.0 2.1E-10 4.5E-15 78.3 1.2 36 842-878 1-43 (43)
54 PRK04863 mukB cell division pr 98.9 0.0011 2.5E-08 82.6 81.3 41 321-361 438-478 (1486)
55 PF00261 Tropomyosin: Tropomyo 98.8 1.4E-05 3E-10 80.2 31.8 203 607-809 27-229 (237)
56 cd00162 RING RING-finger (Real 98.8 1.8E-09 3.9E-14 77.4 2.9 44 841-884 1-45 (45)
57 PF07888 CALCOCO1: Calcium bin 98.8 0.00041 8.9E-09 75.4 45.9 47 771-817 411-457 (546)
58 PF06160 EzrA: Septation ring 98.8 0.00066 1.4E-08 77.4 57.7 341 341-729 62-408 (560)
59 COG5574 PEX10 RING-finger-cont 98.8 1.7E-09 3.8E-14 102.6 2.2 51 839-889 215-266 (271)
60 KOG0018 Structural maintenance 98.8 0.00092 2E-08 76.7 67.5 154 606-761 680-840 (1141)
61 KOG4172 Predicted E3 ubiquitin 98.8 5.3E-10 1.2E-14 76.4 -1.3 52 840-893 8-60 (62)
62 smart00184 RING Ring finger. E 98.8 3.1E-09 6.7E-14 73.4 2.5 39 842-880 1-39 (39)
63 KOG0964 Structural maintenance 98.8 0.00085 1.8E-08 75.8 75.9 59 221-279 229-287 (1200)
64 COG1579 Zn-ribbon protein, pos 98.8 7.9E-06 1.7E-10 79.1 26.1 21 863-885 212-232 (239)
65 PF12128 DUF3584: Protein of u 98.8 0.0025 5.3E-08 80.1 77.9 17 534-550 514-530 (1201)
66 KOG0250 DNA repair protein RAD 98.7 0.0014 3E-08 76.0 65.0 29 529-557 659-687 (1074)
67 PF00261 Tropomyosin: Tropomyo 98.7 1.6E-05 3.5E-10 79.7 28.3 43 773-815 172-214 (237)
68 KOG0976 Rho/Rac1-interacting s 98.6 0.0024 5.1E-08 70.4 60.7 24 256-279 126-149 (1265)
69 PF07888 CALCOCO1: Calcium bin 98.6 0.0022 4.7E-08 70.0 44.3 48 749-796 410-457 (546)
70 PF05701 WEMBL: Weak chloropla 98.6 0.003 6.5E-08 71.4 65.4 42 242-283 40-81 (522)
71 PRK04778 septation ring format 98.6 0.0036 7.8E-08 71.9 51.8 47 355-401 88-134 (569)
72 PF05483 SCP-1: Synaptonemal c 98.6 0.0024 5.1E-08 69.7 82.1 11 139-149 43-53 (786)
73 KOG0977 Nuclear envelope prote 98.5 0.00065 1.4E-08 73.9 34.8 38 517-554 42-79 (546)
74 KOG0311 Predicted E3 ubiquitin 98.5 8.5E-09 1.9E-13 101.8 -2.1 56 832-887 36-92 (381)
75 KOG0824 Predicted E3 ubiquitin 98.5 3.6E-08 7.8E-13 95.3 2.1 48 840-887 8-55 (324)
76 COG5152 Uncharacterized conser 98.5 3E-08 6.4E-13 88.7 1.2 46 840-886 197-242 (259)
77 PF05557 MAD: Mitotic checkpoi 98.5 7.1E-07 1.5E-11 105.4 11.8 27 797-823 605-631 (722)
78 KOG0971 Microtubule-associated 98.5 0.0054 1.2E-07 68.8 47.3 86 500-585 301-388 (1243)
79 KOG0994 Extracellular matrix g 98.5 0.0066 1.4E-07 69.8 59.5 66 218-283 1228-1293(1758)
80 KOG0018 Structural maintenance 98.4 0.0085 1.8E-07 69.2 60.9 36 747-782 805-840 (1141)
81 PF05483 SCP-1: Synaptonemal c 98.4 0.0069 1.5E-07 66.3 84.0 17 63-79 114-130 (786)
82 PF00038 Filament: Intermediat 98.4 0.0057 1.2E-07 65.0 41.1 33 519-551 6-38 (312)
83 KOG0977 Nuclear envelope prote 98.4 0.0054 1.2E-07 67.0 37.1 39 795-838 346-384 (546)
84 PF00038 Filament: Intermediat 98.4 0.0058 1.3E-07 65.0 40.8 44 670-713 260-303 (312)
85 COG5243 HRD1 HRD ubiquitin lig 98.4 2.3E-07 4.9E-12 91.8 3.4 46 838-884 286-344 (491)
86 PF12678 zf-rbx1: RING-H2 zinc 98.4 2E-07 4.4E-12 73.4 2.4 40 841-881 21-73 (73)
87 KOG1813 Predicted E3 ubiquitin 98.3 2.7E-07 5.9E-12 89.2 1.4 46 840-886 242-287 (313)
88 PF14447 Prok-RING_4: Prokaryo 98.2 5.3E-07 1.1E-11 63.4 2.1 49 838-889 6-54 (55)
89 TIGR00570 cdk7 CDK-activating 98.2 8.2E-07 1.8E-11 88.8 3.9 38 856-893 25-62 (309)
90 KOG4643 Uncharacterized coiled 98.2 0.024 5.2E-07 64.9 62.6 32 430-461 263-294 (1195)
91 KOG2879 Predicted E3 ubiquitin 98.2 8.4E-07 1.8E-11 84.8 2.9 47 839-885 239-287 (298)
92 PF04641 Rtf2: Rtf2 RING-finge 98.2 8.4E-07 1.8E-11 90.1 3.1 56 836-893 110-169 (260)
93 COG5540 RING-finger-containing 98.1 8.7E-07 1.9E-11 85.4 2.1 46 840-885 324-372 (374)
94 KOG4593 Mitotic checkpoint pro 98.1 0.024 5.3E-07 62.7 70.4 24 799-822 601-624 (716)
95 KOG2177 Predicted E3 ubiquitin 98.1 8.6E-07 1.9E-11 97.4 1.9 47 835-882 9-55 (386)
96 PF05557 MAD: Mitotic checkpoi 98.1 2.8E-05 6E-10 92.1 14.0 16 856-871 683-701 (722)
97 KOG1785 Tyrosine kinase negati 98.1 1E-06 2.2E-11 88.0 1.4 48 841-888 371-419 (563)
98 PF11789 zf-Nse: Zinc-finger o 98.1 1.4E-06 3E-11 64.1 1.7 44 838-881 10-55 (57)
99 PF09726 Macoilin: Transmembra 98.1 0.0062 1.4E-07 70.3 31.3 42 781-822 619-660 (697)
100 KOG0802 E3 ubiquitin ligase [P 98.1 1.2E-06 2.6E-11 99.3 1.3 49 839-888 291-344 (543)
101 KOG0612 Rho-associated, coiled 98.0 0.059 1.3E-06 63.5 47.9 15 832-846 908-922 (1317)
102 PRK11637 AmiB activator; Provi 98.0 0.012 2.5E-07 65.5 31.8 7 838-844 305-311 (428)
103 PHA02562 46 endonuclease subun 98.0 0.014 3.1E-07 67.9 33.8 54 736-789 338-391 (562)
104 KOG4159 Predicted E3 ubiquitin 98.0 2.6E-06 5.6E-11 89.6 2.4 49 837-886 82-130 (398)
105 PF12861 zf-Apc11: Anaphase-pr 98.0 3.3E-06 7.2E-11 66.3 2.2 47 840-886 22-83 (85)
106 KOG4265 Predicted E3 ubiquitin 97.9 2.9E-06 6.4E-11 85.3 1.5 47 839-886 290-337 (349)
107 COG1579 Zn-ribbon protein, pos 97.9 0.0091 2E-07 58.3 25.2 29 840-868 198-230 (239)
108 PHA02562 46 endonuclease subun 97.9 0.016 3.5E-07 67.5 32.7 10 875-884 497-506 (562)
109 KOG4628 Predicted E3 ubiquitin 97.9 4.4E-06 9.6E-11 85.1 2.2 46 840-885 230-278 (348)
110 KOG4275 Predicted E3 ubiquitin 97.9 1.1E-06 2.4E-11 84.3 -2.2 47 840-893 301-348 (350)
111 KOG2660 Locus-specific chromos 97.9 2.8E-06 6E-11 84.2 0.2 54 833-887 9-63 (331)
112 PF05667 DUF812: Protein of un 97.9 0.071 1.5E-06 60.5 34.8 88 496-587 328-416 (594)
113 KOG4643 Uncharacterized coiled 97.9 0.095 2.1E-06 60.3 71.3 43 47-89 40-82 (1195)
114 KOG3039 Uncharacterized conser 97.8 8.6E-06 1.9E-10 76.2 2.5 54 838-892 220-277 (303)
115 COG5222 Uncharacterized conser 97.8 6.5E-06 1.4E-10 79.1 1.8 43 840-882 275-318 (427)
116 KOG0825 PHD Zn-finger protein 97.8 3.8E-06 8.3E-11 91.3 -0.7 49 841-890 125-176 (1134)
117 PF09726 Macoilin: Transmembra 97.8 0.06 1.3E-06 62.4 32.8 17 772-788 638-654 (697)
118 KOG0946 ER-Golgi vesicle-tethe 97.8 0.035 7.5E-07 62.2 29.0 37 785-821 905-941 (970)
119 COG1340 Uncharacterized archae 97.7 0.063 1.4E-06 53.8 35.4 10 804-813 234-243 (294)
120 KOG0962 DNA repair protein RAD 97.7 0.22 4.9E-06 60.0 78.9 38 523-560 630-667 (1294)
121 KOG1002 Nucleotide excision re 97.7 1.1E-05 2.4E-10 83.8 1.5 53 836-888 533-589 (791)
122 PF06160 EzrA: Septation ring 97.7 0.18 3.8E-06 57.9 57.6 81 636-716 350-430 (560)
123 PF05622 HOOK: HOOK protein; 97.7 9E-06 1.9E-10 95.9 0.0 14 873-886 692-705 (713)
124 KOG4673 Transcription factor T 97.7 0.15 3.3E-06 55.9 64.4 43 743-785 860-902 (961)
125 KOG1003 Actin filament-coating 97.6 0.052 1.1E-06 50.1 27.8 44 722-765 110-153 (205)
126 KOG4673 Transcription factor T 97.6 0.18 4E-06 55.4 66.4 29 74-102 351-379 (961)
127 PF05622 HOOK: HOOK protein; 97.6 1.4E-05 3E-10 94.3 0.0 18 854-871 659-676 (713)
128 KOG0995 Centromere-associated 97.6 0.19 4.2E-06 54.6 47.1 62 529-593 299-360 (581)
129 PF15070 GOLGA2L5: Putative go 97.5 0.27 5.9E-06 56.2 51.1 29 256-284 35-63 (617)
130 KOG0995 Centromere-associated 97.5 0.22 4.8E-06 54.2 42.5 98 162-262 216-313 (581)
131 KOG0297 TNF receptor-associate 97.5 5.1E-05 1.1E-09 81.7 2.6 53 836-889 18-71 (391)
132 COG5220 TFB3 Cdk activating ki 97.5 2E-05 4.2E-10 73.4 -0.8 48 840-887 11-66 (314)
133 KOG1039 Predicted E3 ubiquitin 97.4 5.4E-05 1.2E-09 78.0 1.9 49 838-886 160-222 (344)
134 PF12718 Tropomyosin_1: Tropom 97.4 0.06 1.3E-06 48.8 21.2 8 673-680 22-29 (143)
135 KOG1571 Predicted E3 ubiquitin 97.4 2.9E-05 6.3E-10 78.3 -0.3 49 839-893 305-353 (355)
136 PF05667 DUF812: Protein of un 97.4 0.4 8.6E-06 54.6 32.6 99 653-756 428-526 (594)
137 COG4477 EzrA Negative regulato 97.4 0.31 6.6E-06 52.6 49.2 11 498-508 199-209 (570)
138 KOG1493 Anaphase-promoting com 97.3 4.4E-05 9.5E-10 57.2 -0.2 46 841-886 22-82 (84)
139 KOG4692 Predicted E3 ubiquitin 97.3 0.00012 2.7E-09 72.3 2.1 46 839-885 422-467 (489)
140 PF14570 zf-RING_4: RING/Ubox 97.3 0.00023 5.1E-09 49.3 2.8 44 842-885 1-48 (48)
141 KOG0612 Rho-associated, coiled 97.2 0.77 1.7E-05 54.7 47.3 12 860-871 916-927 (1317)
142 COG4372 Uncharacterized protei 97.2 0.31 6.6E-06 49.9 32.4 55 644-698 116-170 (499)
143 KOG0828 Predicted E3 ubiquitin 97.2 0.00013 2.8E-09 75.7 1.6 48 838-885 570-634 (636)
144 KOG1029 Endocytic adaptor prot 97.2 0.56 1.2E-05 52.6 36.7 78 618-695 439-516 (1118)
145 PF14915 CCDC144C: CCDC144C pr 97.2 0.28 6E-06 48.9 37.8 53 678-730 206-258 (305)
146 PF15070 GOLGA2L5: Putative go 97.2 0.67 1.4E-05 53.1 50.7 38 324-361 28-65 (617)
147 KOG0826 Predicted E3 ubiquitin 97.2 8.5E-05 1.8E-09 73.3 -0.3 55 838-893 299-354 (357)
148 PF09728 Taxilin: Myosin-like 97.2 0.42 9.2E-06 49.8 38.4 62 750-811 245-306 (309)
149 PF09730 BicD: Microtubule-ass 97.1 0.78 1.7E-05 52.9 63.5 49 221-269 68-116 (717)
150 COG1340 Uncharacterized archae 97.1 0.37 8E-06 48.5 38.5 31 527-557 72-102 (294)
151 PRK09039 hypothetical protein; 97.1 0.18 3.9E-06 53.6 23.9 7 856-862 267-273 (343)
152 KOG0980 Actin-binding protein 97.1 0.87 1.9E-05 52.2 33.0 15 824-838 596-610 (980)
153 KOG2817 Predicted E3 ubiquitin 97.1 0.00031 6.7E-09 72.0 2.6 60 835-894 330-394 (394)
154 PRK09039 hypothetical protein; 97.0 0.14 3E-06 54.4 22.2 18 644-661 74-91 (343)
155 KOG1814 Predicted E3 ubiquitin 97.0 0.0004 8.7E-09 71.0 2.7 45 839-883 184-238 (445)
156 KOG0963 Transcription factor/C 97.0 0.89 1.9E-05 50.3 43.0 80 599-678 186-269 (629)
157 PF09730 BicD: Microtubule-ass 97.0 1.2 2.5E-05 51.6 65.1 28 338-365 120-147 (717)
158 KOG4360 Uncharacterized coiled 96.9 0.8 1.7E-05 49.0 25.9 68 214-281 197-264 (596)
159 PF15619 Lebercilin: Ciliary p 96.9 0.43 9.3E-06 45.8 25.5 31 651-681 68-98 (194)
160 KOG1001 Helicase-like transcri 96.9 0.00034 7.3E-09 80.0 1.3 48 840-888 455-503 (674)
161 PF13514 AAA_27: AAA domain 96.9 2.4 5.2E-05 53.6 88.7 32 431-462 564-595 (1111)
162 COG5194 APC11 Component of SCF 96.8 0.00069 1.5E-08 51.4 2.1 32 856-888 53-84 (88)
163 PF04849 HAP1_N: HAP1 N-termin 96.8 0.69 1.5E-05 47.1 26.9 18 671-688 166-183 (306)
164 PF09789 DUF2353: Uncharacteri 96.8 0.39 8.4E-06 49.4 22.2 35 601-635 8-42 (319)
165 COG0419 SbcC ATPase involved i 96.8 2.4 5.3E-05 52.3 81.0 11 48-58 42-52 (908)
166 KOG4593 Mitotic checkpoint pro 96.8 1.4 3E-05 49.4 63.4 14 852-865 650-663 (716)
167 KOG3113 Uncharacterized conser 96.6 0.0011 2.4E-08 62.9 2.3 53 837-892 109-165 (293)
168 KOG1029 Endocytic adaptor prot 96.6 1.9 4.2E-05 48.6 36.6 37 644-680 479-515 (1118)
169 KOG1100 Predicted E3 ubiquitin 96.5 0.0016 3.5E-08 62.8 3.0 46 842-894 161-207 (207)
170 PF04849 HAP1_N: HAP1 N-termin 96.5 1.2 2.7E-05 45.3 28.5 23 607-629 165-187 (306)
171 PF05290 Baculo_IE-1: Baculovi 96.5 0.0075 1.6E-07 51.5 6.0 51 838-888 79-135 (140)
172 KOG0971 Microtubule-associated 96.4 2.7 5.8E-05 48.4 74.9 54 434-487 493-547 (1243)
173 PF10473 CENP-F_leu_zip: Leuci 96.4 0.68 1.5E-05 41.4 21.0 45 681-725 61-105 (140)
174 KOG3002 Zn finger protein [Gen 96.3 0.0019 4.1E-08 65.9 2.1 45 836-885 45-91 (299)
175 PF10272 Tmpp129: Putative tra 96.3 0.0022 4.9E-08 66.6 2.3 36 857-892 311-358 (358)
176 KOG3800 Predicted E3 ubiquitin 96.3 0.0019 4.1E-08 63.2 1.7 35 856-890 22-56 (300)
177 COG5185 HEC1 Protein involved 96.3 2 4.3E-05 45.5 36.4 61 224-284 297-357 (622)
178 KOG3161 Predicted E3 ubiquitin 96.2 0.0011 2.4E-08 71.3 -0.1 38 838-878 10-51 (861)
179 PF08647 BRE1: BRE1 E3 ubiquit 96.2 0.2 4.3E-06 42.0 13.3 79 650-728 2-80 (96)
180 KOG0980 Actin-binding protein 96.2 3.4 7.3E-05 47.7 32.9 13 88-100 84-96 (980)
181 COG0419 SbcC ATPase involved i 96.1 5.5 0.00012 49.2 77.6 9 853-861 814-822 (908)
182 KOG2034 Vacuolar sorting prote 96.1 0.0083 1.8E-07 68.1 5.7 46 826-871 804-851 (911)
183 KOG3579 Predicted E3 ubiquitin 96.0 0.0026 5.7E-08 61.3 1.3 34 839-872 268-305 (352)
184 KOG2114 Vacuolar assembly/sort 96.0 0.012 2.6E-07 66.3 6.4 72 794-882 808-880 (933)
185 KOG4362 Transcriptional regula 96.0 0.0016 3.4E-08 72.5 -0.4 53 832-884 14-68 (684)
186 KOG4185 Predicted E3 ubiquitin 96.0 0.0029 6.4E-08 66.5 1.5 36 849-884 19-54 (296)
187 COG5236 Uncharacterized conser 96.0 0.0029 6.3E-08 62.7 1.4 47 839-885 61-108 (493)
188 COG5175 MOT2 Transcriptional r 95.9 0.0033 7.2E-08 62.2 1.6 51 842-892 17-71 (480)
189 KOG1734 Predicted RING-contain 95.9 0.002 4.3E-08 61.8 -0.1 50 839-888 224-284 (328)
190 PF13514 AAA_27: AAA domain 95.8 8.4 0.00018 48.8 78.1 61 519-579 454-516 (1111)
191 PF11793 FANCL_C: FANCL C-term 95.7 0.0028 6.2E-08 49.3 0.2 47 840-886 3-67 (70)
192 KOG2930 SCF ubiquitin ligase, 95.6 0.0055 1.2E-07 49.3 1.3 29 856-885 80-108 (114)
193 PF07926 TPR_MLP1_2: TPR/MLP1/ 95.6 1.7 3.6E-05 39.2 18.9 28 795-822 95-122 (132)
194 PHA03096 p28-like protein; Pro 95.6 0.0049 1.1E-07 62.5 1.2 44 840-883 179-232 (284)
195 COG3813 Uncharacterized protei 95.6 0.011 2.4E-07 43.9 2.6 49 840-891 6-58 (84)
196 COG5219 Uncharacterized conser 95.6 0.0061 1.3E-07 68.7 1.9 47 839-885 1469-1523(1525)
197 PF08317 Spc7: Spc7 kinetochor 95.5 4.2 9E-05 43.2 29.2 89 469-557 181-270 (325)
198 smart00744 RINGv The RING-vari 95.5 0.0096 2.1E-07 42.5 2.1 41 841-881 1-49 (49)
199 PF14915 CCDC144C: CCDC144C pr 95.5 3.2 7E-05 41.7 40.9 6 754-759 233-238 (305)
200 PF10367 Vps39_2: Vacuolar sor 95.5 0.022 4.8E-07 49.6 4.8 30 838-867 77-108 (109)
201 KOG0963 Transcription factor/C 95.5 5.6 0.00012 44.3 43.7 22 320-341 17-38 (629)
202 PF10146 zf-C4H2: Zinc finger- 95.4 1.3 2.9E-05 43.7 17.3 28 861-889 196-223 (230)
203 KOG1941 Acetylcholine receptor 95.4 0.0047 1E-07 62.5 0.3 44 840-883 366-414 (518)
204 KOG1645 RING-finger-containing 95.3 0.0045 9.7E-08 63.4 -0.2 42 852-893 22-64 (463)
205 PF10481 CENP-F_N: Cenp-F N-te 95.2 3.5 7.6E-05 40.5 18.8 28 786-813 164-191 (307)
206 PF02891 zf-MIZ: MIZ/SP-RING z 95.2 0.011 2.3E-07 42.4 1.6 44 840-883 3-50 (50)
207 PF09789 DUF2353: Uncharacteri 95.1 4.8 0.0001 41.6 25.3 21 647-667 82-102 (319)
208 PF03854 zf-P11: P-11 zinc fin 95.1 0.01 2.2E-07 40.3 1.1 43 840-885 3-46 (50)
209 COG3883 Uncharacterized protei 95.1 4.1 8.8E-05 40.7 28.8 60 608-667 37-96 (265)
210 COG4477 EzrA Negative regulato 94.9 7.2 0.00016 42.6 49.2 23 429-451 253-275 (570)
211 PF10481 CENP-F_N: Cenp-F N-te 94.9 1.7 3.6E-05 42.7 15.6 54 765-818 76-129 (307)
212 COG5109 Uncharacterized conser 94.9 0.015 3.2E-07 57.3 2.0 60 835-894 332-396 (396)
213 KOG3970 Predicted E3 ubiquitin 94.8 0.017 3.7E-07 53.8 2.0 47 839-885 50-105 (299)
214 TIGR03185 DNA_S_dndD DNA sulfu 94.7 12 0.00026 44.3 40.0 30 431-460 262-291 (650)
215 KOG0827 Predicted E3 ubiquitin 94.7 0.013 2.8E-07 59.6 1.1 36 854-889 23-60 (465)
216 KOG2932 E3 ubiquitin ligase in 94.7 0.013 2.7E-07 57.6 1.0 42 840-884 91-133 (389)
217 KOG4445 Uncharacterized conser 94.7 0.017 3.6E-07 56.6 1.8 49 839-887 115-188 (368)
218 KOG0993 Rab5 GTPase effector R 94.6 6.8 0.00015 40.9 34.5 32 841-872 470-507 (542)
219 KOG3899 Uncharacterized conser 94.5 0.012 2.7E-07 57.1 0.5 36 857-892 325-372 (381)
220 PF07111 HCR: Alpha helical co 94.4 11 0.00024 42.7 68.7 10 877-886 722-731 (739)
221 KOG0298 DEAD box-containing he 94.2 0.11 2.4E-06 61.8 7.5 51 834-885 1148-1199(1394)
222 PF07111 HCR: Alpha helical co 94.2 13 0.00028 42.3 81.0 68 220-287 160-227 (739)
223 PF13870 DUF4201: Domain of un 94.2 5.5 0.00012 38.0 22.4 78 739-816 88-170 (177)
224 TIGR03007 pepcterm_ChnLen poly 93.9 11 0.00025 42.9 23.3 28 531-558 161-188 (498)
225 PF12325 TMF_TATA_bd: TATA ele 93.9 4 8.6E-05 35.6 15.7 95 374-484 18-112 (120)
226 TIGR03185 DNA_S_dndD DNA sulfu 93.8 18 0.00039 42.8 38.8 26 529-554 228-253 (650)
227 PF08317 Spc7: Spc7 kinetochor 93.8 11 0.00023 40.1 30.0 14 824-837 276-289 (325)
228 PF14569 zf-UDP: Zinc-binding 93.8 0.047 1E-06 41.8 2.2 47 840-886 10-63 (80)
229 KOG3039 Uncharacterized conser 93.7 0.041 9E-07 52.3 2.2 37 835-871 39-75 (303)
230 PF05883 Baculo_RING: Baculovi 93.6 0.02 4.4E-07 49.8 0.1 33 839-871 26-67 (134)
231 TIGR01005 eps_transp_fam exopo 93.6 9.2 0.0002 46.3 22.7 25 612-636 197-221 (754)
232 PF12325 TMF_TATA_bd: TATA ele 93.5 4.8 0.0001 35.1 15.0 45 651-695 68-112 (120)
233 PF05911 DUF869: Plant protein 93.4 21 0.00045 42.2 66.4 49 314-362 261-309 (769)
234 KOG4360 Uncharacterized coiled 93.3 9.2 0.0002 41.3 18.6 96 649-744 203-298 (596)
235 KOG4185 Predicted E3 ubiquitin 93.3 0.26 5.6E-06 51.9 7.8 44 840-883 208-265 (296)
236 KOG0827 Predicted E3 ubiquitin 93.2 0.25 5.5E-06 50.6 7.0 45 841-886 198-246 (465)
237 TIGR01005 eps_transp_fam exopo 93.1 24 0.00051 42.8 25.2 22 607-628 199-220 (754)
238 PRK11281 hypothetical protein; 92.7 33 0.00072 42.7 44.8 29 675-703 295-323 (1113)
239 PF07975 C1_4: TFIIH C1-like d 92.7 0.093 2E-06 37.3 2.3 39 842-881 2-50 (51)
240 PF08614 ATG16: Autophagy prot 92.6 1.6 3.4E-05 42.4 11.5 38 732-769 120-157 (194)
241 KOG1937 Uncharacterized conser 92.5 17 0.00037 38.8 35.6 41 669-709 386-426 (521)
242 PF05911 DUF869: Plant protein 92.5 28 0.00061 41.2 70.5 36 470-505 274-309 (769)
243 KOG1899 LAR transmembrane tyro 92.3 22 0.00047 39.6 21.6 12 876-887 389-400 (861)
244 TIGR01562 FdhE formate dehydro 92.3 0.042 9.1E-07 56.4 0.2 44 839-883 184-233 (305)
245 PF06906 DUF1272: Protein of u 92.2 0.22 4.9E-06 35.5 3.5 47 840-889 6-56 (57)
246 KOG0804 Cytoplasmic Zn-finger 92.1 14 0.0003 39.4 17.9 12 777-788 435-446 (493)
247 COG4647 AcxC Acetone carboxyla 92.0 0.06 1.3E-06 45.3 0.7 22 844-865 62-83 (165)
248 PF06818 Fez1: Fez1; InterPro 91.9 12 0.00026 35.8 23.1 35 611-645 12-46 (202)
249 TIGR01843 type_I_hlyD type I s 91.9 25 0.00053 39.2 25.4 19 797-815 252-270 (423)
250 KOG1812 Predicted E3 ubiquitin 91.8 0.082 1.8E-06 57.0 1.7 50 839-888 146-206 (384)
251 PF04111 APG6: Autophagy prote 91.8 4.5 9.8E-05 42.5 14.5 87 727-820 49-135 (314)
252 KOG0804 Cytoplasmic Zn-finger 91.7 16 0.00034 39.1 17.7 42 646-687 356-397 (493)
253 KOG0825 PHD Zn-finger protein 91.7 0.065 1.4E-06 59.7 0.8 47 840-886 97-155 (1134)
254 KOG4302 Microtubule-associated 91.6 30 0.00065 39.8 22.6 33 597-629 56-88 (660)
255 KOG1815 Predicted E3 ubiquitin 91.6 0.12 2.6E-06 57.4 2.8 55 837-891 68-132 (444)
256 PF13870 DUF4201: Domain of un 91.6 13 0.00028 35.5 24.2 78 615-698 5-82 (177)
257 PF04111 APG6: Autophagy prote 91.6 4.9 0.00011 42.3 14.4 11 849-859 193-203 (314)
258 PF13851 GAS: Growth-arrest sp 91.6 14 0.00031 35.9 24.5 7 616-622 34-40 (201)
259 cd00065 FYVE FYVE domain; Zinc 91.2 0.082 1.8E-06 39.5 0.7 33 840-872 3-39 (57)
260 PRK10929 putative mechanosensi 91.2 48 0.001 41.3 45.8 43 667-709 267-309 (1109)
261 KOG1428 Inhibitor of type V ad 91.1 0.11 2.4E-06 61.5 1.9 46 840-885 3487-3544(3738)
262 COG5185 HEC1 Protein involved 91.0 25 0.00054 37.7 38.7 21 531-551 330-350 (622)
263 KOG0249 LAR-interacting protei 91.0 21 0.00045 40.5 18.5 40 772-811 218-257 (916)
264 PF13240 zinc_ribbon_2: zinc-r 90.7 0.067 1.4E-06 31.1 -0.2 23 861-884 1-23 (23)
265 PF09755 DUF2046: Uncharacteri 90.5 23 0.00049 36.4 35.8 59 531-589 178-246 (310)
266 PF10146 zf-C4H2: Zinc finger- 90.4 19 0.00041 35.7 16.4 44 725-768 36-79 (230)
267 PF14319 Zn_Tnp_IS91: Transpos 90.3 0.1 2.3E-06 45.0 0.6 45 833-884 24-70 (111)
268 PTZ00303 phosphatidylinositol 90.2 0.16 3.6E-06 56.5 2.1 32 840-871 461-501 (1374)
269 PRK10929 putative mechanosensi 90.2 58 0.0013 40.6 44.2 8 804-811 417-424 (1109)
270 PF06008 Laminin_I: Laminin Do 90.0 25 0.00054 36.1 32.9 7 615-621 58-64 (264)
271 PF09787 Golgin_A5: Golgin sub 90.0 40 0.00087 38.5 30.7 15 611-625 364-378 (511)
272 PRK03564 formate dehydrogenase 89.8 0.12 2.6E-06 53.0 0.7 43 839-882 187-234 (309)
273 PF06818 Fez1: Fez1; InterPro 89.8 19 0.00042 34.4 24.3 73 609-681 31-103 (202)
274 PF10498 IFT57: Intra-flagella 89.7 32 0.00069 36.9 19.1 9 826-834 337-345 (359)
275 PRK04023 DNA polymerase II lar 89.7 0.19 4.2E-06 58.5 2.3 47 840-889 627-678 (1121)
276 PF01363 FYVE: FYVE zinc finge 89.6 0.031 6.7E-07 43.8 -3.0 33 839-871 9-45 (69)
277 PF10235 Cript: Microtubule-as 89.6 0.2 4.4E-06 40.4 1.7 36 840-885 45-80 (90)
278 TIGR00634 recN DNA repair prot 89.1 50 0.0011 38.3 26.8 33 603-635 169-201 (563)
279 PF02318 FYVE_2: FYVE-type zin 89.0 0.56 1.2E-05 41.2 4.1 44 839-882 54-102 (118)
280 PF04216 FdhE: Protein involve 88.9 0.076 1.6E-06 55.4 -1.5 44 840-884 173-221 (290)
281 PF04582 Reo_sigmaC: Reovirus 88.8 0.97 2.1E-05 46.4 6.2 10 613-622 39-48 (326)
282 PF13248 zf-ribbon_3: zinc-rib 88.8 0.14 3E-06 30.9 0.2 24 860-884 3-26 (26)
283 KOG0249 LAR-interacting protei 88.7 50 0.0011 37.7 19.8 49 735-783 209-257 (916)
284 PF07191 zinc-ribbons_6: zinc- 88.6 0.056 1.2E-06 41.0 -2.0 40 840-885 2-41 (70)
285 smart00787 Spc7 Spc7 kinetocho 88.5 35 0.00076 35.8 30.1 14 824-837 271-284 (312)
286 KOG1952 Transcription factor N 88.4 0.38 8.2E-06 54.8 3.3 47 838-884 190-246 (950)
287 PF04582 Reo_sigmaC: Reovirus 88.4 1.1 2.3E-05 46.1 6.2 6 711-716 130-135 (326)
288 PF07800 DUF1644: Protein of u 88.1 0.44 9.4E-06 42.8 2.8 20 839-858 2-21 (162)
289 PF06008 Laminin_I: Laminin Do 87.7 36 0.00078 34.9 33.4 29 531-559 87-115 (264)
290 PF12329 TMF_DNA_bd: TATA elem 87.4 11 0.00025 29.7 10.1 22 673-694 6-27 (74)
291 KOG1729 FYVE finger containing 87.3 0.14 3E-06 52.1 -0.8 45 840-884 169-224 (288)
292 smart00787 Spc7 Spc7 kinetocho 87.3 42 0.00091 35.2 29.6 42 748-789 217-258 (312)
293 COG2433 Uncharacterized conser 87.2 15 0.00032 41.1 14.1 35 777-811 474-508 (652)
294 smart00064 FYVE Protein presen 86.9 0.19 4.1E-06 39.1 -0.0 33 839-871 10-46 (68)
295 PF08746 zf-RING-like: RING-li 86.8 0.62 1.3E-05 32.2 2.4 39 842-880 1-43 (43)
296 PF10267 Tmemb_cc2: Predicted 86.7 6.3 0.00014 42.3 11.0 20 861-880 360-379 (395)
297 KOG1899 LAR transmembrane tyro 86.6 60 0.0013 36.4 20.3 94 616-709 111-204 (861)
298 COG3364 Zn-ribbon containing p 86.5 0.32 7E-06 39.4 1.0 26 853-883 4-29 (112)
299 KOG2113 Predicted RNA binding 86.4 0.38 8.3E-06 47.8 1.7 48 834-884 338-386 (394)
300 COG2433 Uncharacterized conser 86.1 50 0.0011 37.1 17.4 6 829-834 536-541 (652)
301 KOG4809 Rab6 GTPase-interactin 86.1 59 0.0013 35.8 35.5 67 609-675 338-404 (654)
302 PF00769 ERM: Ezrin/radixin/mo 86.0 41 0.00089 34.0 18.4 31 800-830 184-214 (246)
303 PF09787 Golgin_A5: Golgin sub 86.0 69 0.0015 36.6 37.3 14 575-588 158-171 (511)
304 KOG2068 MOT2 transcription fac 86.0 0.66 1.4E-05 47.3 3.2 48 840-888 250-301 (327)
305 PF09986 DUF2225: Uncharacteri 85.7 0.26 5.6E-06 48.5 0.2 55 837-892 3-66 (214)
306 KOG0309 Conserved WD40 repeat- 85.7 0.46 1E-05 53.0 2.1 43 839-882 1028-1073(1081)
307 PF05605 zf-Di19: Drought indu 84.9 0.38 8.1E-06 35.4 0.7 41 839-886 2-43 (54)
308 PRK11281 hypothetical protein; 84.8 1.2E+02 0.0025 38.1 43.9 25 431-455 80-104 (1113)
309 KOG3268 Predicted E3 ubiquitin 84.8 0.62 1.3E-05 42.0 2.1 31 856-886 189-229 (234)
310 COG4026 Uncharacterized protei 84.7 15 0.00032 35.0 10.9 70 719-788 133-202 (290)
311 KOG4718 Non-SMC (structural ma 84.7 0.74 1.6E-05 43.2 2.6 66 825-892 165-233 (235)
312 PF12795 MscS_porin: Mechanose 84.1 50 0.0011 33.3 25.0 9 777-785 199-207 (240)
313 KOG1850 Myosin-like coiled-coi 84.1 52 0.0011 33.5 39.1 17 801-817 295-311 (391)
314 KOG2462 C2H2-type Zn-finger pr 84.1 0.34 7.3E-06 47.8 0.2 12 840-851 162-173 (279)
315 KOG3842 Adaptor protein Pellin 84.0 0.72 1.6E-05 45.8 2.3 37 852-888 373-417 (429)
316 PF04710 Pellino: Pellino; In 83.8 0.33 7.2E-06 50.4 0.0 49 839-887 328-403 (416)
317 PRK14714 DNA polymerase II lar 83.7 0.57 1.2E-05 56.3 1.9 49 840-888 668-723 (1337)
318 PF14353 CpXC: CpXC protein 83.7 0.69 1.5E-05 41.4 2.0 48 840-887 2-51 (128)
319 PF08882 Acetone_carb_G: Aceto 83.7 0.28 6.2E-06 40.8 -0.4 14 852-865 24-37 (112)
320 KOG0999 Microtubule-associated 83.6 76 0.0017 35.0 68.7 20 779-798 685-704 (772)
321 KOG2979 Protein involved in DN 83.5 34 0.00073 33.9 13.2 46 838-883 175-222 (262)
322 TIGR01000 bacteriocin_acc bact 83.4 84 0.0018 35.4 25.0 20 788-807 295-314 (457)
323 PLN02189 cellulose synthase 83.3 0.7 1.5E-05 54.9 2.3 46 840-885 35-87 (1040)
324 PF10571 UPF0547: Uncharacteri 83.1 0.45 9.8E-06 28.6 0.4 12 874-885 14-25 (26)
325 KOG0979 Structural maintenance 82.9 1.2E+02 0.0025 36.6 65.8 30 791-820 870-899 (1072)
326 COG4026 Uncharacterized protei 82.9 22 0.00047 34.0 11.2 19 801-819 187-205 (290)
327 PHA02768 hypothetical protein; 82.7 0.62 1.3E-05 33.8 1.0 39 840-887 6-44 (55)
328 PF12773 DZR: Double zinc ribb 82.7 1.3 2.7E-05 31.9 2.7 41 842-888 1-43 (50)
329 PF09738 DUF2051: Double stran 82.5 41 0.00088 35.0 14.3 21 795-815 223-243 (302)
330 PF06156 DUF972: Protein of un 82.2 20 0.00042 30.7 9.9 10 844-853 88-97 (107)
331 PLN02436 cellulose synthase A 81.8 0.85 1.8E-05 54.3 2.3 46 840-885 37-89 (1094)
332 TIGR02680 conserved hypothetic 81.7 1.8E+02 0.0039 37.9 73.8 24 256-279 296-319 (1353)
333 PRK10246 exonuclease subunit S 81.5 1.6E+02 0.0034 37.2 80.4 15 875-889 976-990 (1047)
334 cd00350 rubredoxin_like Rubred 81.4 1 2.3E-05 29.0 1.6 11 874-884 17-27 (33)
335 KOG4739 Uncharacterized protei 81.2 0.47 1E-05 46.1 -0.0 24 848-871 14-37 (233)
336 PLN02195 cellulose synthase A 81.2 1.1 2.4E-05 53.0 2.8 47 840-886 7-60 (977)
337 PF03148 Tektin: Tektin family 80.8 91 0.002 34.0 29.3 54 59-112 120-173 (384)
338 KOG2113 Predicted RNA binding 80.7 0.46 1E-05 47.2 -0.3 51 835-885 132-183 (394)
339 KOG1940 Zn-finger protein [Gen 80.6 0.93 2E-05 45.6 1.8 42 840-882 159-204 (276)
340 PLN02638 cellulose synthase A 80.6 1 2.2E-05 53.9 2.3 46 840-885 18-70 (1079)
341 KOG1850 Myosin-like coiled-coi 80.4 72 0.0016 32.6 40.8 14 799-812 300-313 (391)
342 COG0068 HypF Hydrogenase matur 80.4 0.79 1.7E-05 51.7 1.3 23 862-884 154-183 (750)
343 PF04710 Pellino: Pellino; In 80.2 0.54 1.2E-05 48.9 0.0 32 852-883 304-337 (416)
344 TIGR01000 bacteriocin_acc bact 80.0 1.1E+02 0.0024 34.4 24.3 42 776-817 275-317 (457)
345 PF15616 TerY-C: TerY-C metal 79.9 0.55 1.2E-05 41.3 -0.1 41 838-885 76-116 (131)
346 PF09538 FYDLN_acid: Protein o 79.8 0.84 1.8E-05 38.9 1.0 12 876-887 28-39 (108)
347 TIGR03017 EpsF chain length de 79.7 1.1E+02 0.0024 34.3 25.6 21 614-634 176-196 (444)
348 KOG0972 Huntingtin interacting 79.1 66 0.0014 32.3 13.5 70 766-835 276-346 (384)
349 TIGR00622 ssl1 transcription f 78.9 1.4 3E-05 37.5 2.0 42 840-882 56-111 (112)
350 PF12660 zf-TFIIIC: Putative z 78.8 0.29 6.3E-06 41.2 -2.0 47 840-886 15-67 (99)
351 PHA02825 LAP/PHD finger-like p 78.7 1.9 4.2E-05 38.9 2.9 47 839-886 8-60 (162)
352 PF10186 Atg14: UV radiation r 78.3 92 0.002 32.6 20.2 11 840-850 174-184 (302)
353 PF14197 Cep57_CLD_2: Centroso 78.3 30 0.00064 26.9 9.7 12 618-629 7-18 (69)
354 COG4306 Uncharacterized protei 78.2 1.1 2.3E-05 38.0 1.1 25 860-888 29-53 (160)
355 PF15066 CAGE1: Cancer-associa 78.1 1.1E+02 0.0023 33.3 28.0 41 673-713 384-424 (527)
356 COG1675 TFA1 Transcription ini 77.8 2.9 6.3E-05 39.1 4.0 35 839-889 113-147 (176)
357 PHA02862 5L protein; Provision 77.8 1.9 4.1E-05 38.0 2.5 45 840-885 3-53 (156)
358 PLN02915 cellulose synthase A 77.7 1.4 3E-05 52.6 2.3 46 840-885 16-68 (1044)
359 COG3058 FdhE Uncharacterized p 77.4 0.99 2.1E-05 44.5 0.8 46 837-883 183-234 (308)
360 PLN02400 cellulose synthase 77.3 1.2 2.7E-05 53.2 1.7 46 840-885 37-89 (1085)
361 PF10164 DUF2367: Uncharacteri 77.1 0.67 1.5E-05 37.6 -0.3 37 841-884 51-98 (98)
362 PRK10869 recombination and rep 77.1 1.5E+02 0.0032 34.3 26.7 9 611-619 187-195 (553)
363 KOG2991 Splicing regulator [RN 77.1 78 0.0017 31.1 24.9 53 533-586 179-231 (330)
364 PF03833 PolC_DP2: DNA polymer 76.7 0.8 1.7E-05 52.7 0.0 46 840-888 656-706 (900)
365 TIGR00373 conserved hypothetic 76.6 2.8 6.1E-05 39.0 3.6 35 838-888 108-142 (158)
366 PF10083 DUF2321: Uncharacteri 76.5 1.5 3.2E-05 39.4 1.6 26 859-888 28-53 (158)
367 KOG2807 RNA polymerase II tran 76.2 1.2 2.5E-05 44.9 1.0 25 856-881 350-374 (378)
368 KOG3799 Rab3 effector RIM1 and 76.2 6.3 0.00014 34.0 5.1 30 838-867 64-97 (169)
369 PRK06266 transcription initiat 76.0 2.7 5.9E-05 39.9 3.3 35 838-888 116-150 (178)
370 PF14197 Cep57_CLD_2: Centroso 75.9 35 0.00076 26.5 9.6 60 221-280 4-63 (69)
371 COG1198 PriA Primosomal protei 75.7 1.1 2.4E-05 52.2 0.7 24 858-883 461-484 (730)
372 KOG0999 Microtubule-associated 75.6 1.4E+02 0.003 33.2 72.2 70 320-398 151-220 (772)
373 PF09538 FYDLN_acid: Protein o 75.3 1.6 3.5E-05 37.2 1.5 30 835-864 5-39 (108)
374 PF07503 zf-HYPF: HypF finger; 75.1 2.9 6.4E-05 27.3 2.3 25 861-885 1-32 (35)
375 PRK10869 recombination and rep 74.8 1.7E+02 0.0036 33.9 27.1 35 602-636 164-198 (553)
376 TIGR02338 gimC_beta prefoldin, 74.7 55 0.0012 28.2 13.5 34 602-635 67-100 (110)
377 KOG0288 WD40 repeat protein Ti 74.7 1.2E+02 0.0027 32.3 17.2 48 621-668 18-65 (459)
378 PRK11032 hypothetical protein; 74.6 73 0.0016 29.5 12.1 30 849-883 122-151 (160)
379 COG1655 Uncharacterized protei 74.2 0.55 1.2E-05 44.6 -1.7 14 838-851 18-31 (267)
380 PRK05978 hypothetical protein; 73.2 2.5 5.4E-05 38.3 2.2 32 840-887 34-65 (148)
381 KOG1812 Predicted E3 ubiquitin 73.0 1.5 3.2E-05 47.5 0.9 42 837-879 304-350 (384)
382 PF04423 Rad50_zn_hook: Rad50 73.0 1.1 2.4E-05 32.9 -0.1 12 876-887 22-33 (54)
383 KOG0979 Structural maintenance 73.0 2.2E+02 0.0048 34.4 64.9 182 64-289 176-357 (1072)
384 KOG2462 C2H2-type Zn-finger pr 72.8 2.3 4.9E-05 42.2 2.0 16 840-855 188-203 (279)
385 KOG3842 Adaptor protein Pellin 72.7 2.1 4.6E-05 42.7 1.8 30 853-882 318-349 (429)
386 PF13717 zinc_ribbon_4: zinc-r 72.6 1.4 3E-05 29.1 0.3 12 840-851 3-14 (36)
387 PRK13169 DNA replication intia 72.3 12 0.00027 32.0 6.0 9 844-852 85-93 (110)
388 COG3024 Uncharacterized protei 72.3 2.5 5.4E-05 31.3 1.6 14 874-887 7-20 (65)
389 PF14205 Cys_rich_KTR: Cystein 72.0 1.5 3.1E-05 31.4 0.3 11 838-848 3-13 (55)
390 PRK01343 zinc-binding protein; 71.6 2.9 6.3E-05 30.6 1.8 14 873-886 8-21 (57)
391 PF10046 BLOC1_2: Biogenesis o 71.5 62 0.0013 27.3 12.7 29 663-691 26-54 (99)
392 PRK15422 septal ring assembly 71.3 49 0.0011 26.1 10.1 48 216-263 12-59 (79)
393 PF09297 zf-NADH-PPase: NADH p 71.1 1.5 3.4E-05 28.0 0.3 25 859-883 3-30 (32)
394 TIGR02300 FYDLN_acid conserved 71.0 2.3 5.1E-05 36.7 1.4 16 836-851 6-21 (129)
395 PF10013 DUF2256: Uncharacteri 71.0 2.3 5E-05 28.7 1.1 13 873-885 7-19 (42)
396 KOG1356 Putative transcription 70.8 1.3 2.9E-05 50.7 -0.1 44 840-883 230-280 (889)
397 PF13166 AAA_13: AAA domain 70.7 2.4E+02 0.0053 33.9 28.0 7 574-580 257-263 (712)
398 PF09723 Zn-ribbon_8: Zinc rib 70.6 1.2 2.7E-05 30.6 -0.2 26 855-882 9-34 (42)
399 KOG0239 Kinesin (KAR3 subfamil 70.5 2.3E+02 0.0049 33.5 21.5 16 799-814 301-316 (670)
400 PF12906 RINGv: RING-variant d 70.1 2.7 5.8E-05 29.7 1.4 39 842-880 1-47 (47)
401 PF13719 zinc_ribbon_5: zinc-r 70.0 1.8 3.9E-05 28.8 0.4 13 840-852 3-15 (37)
402 KOG1815 Predicted E3 ubiquitin 69.8 2.3 5E-05 47.4 1.5 37 852-888 179-240 (444)
403 PF15290 Syntaphilin: Golgi-lo 69.2 1.3E+02 0.0029 30.2 14.6 47 774-820 121-167 (305)
404 PRK14559 putative protein seri 69.0 3.1 6.7E-05 48.1 2.4 25 861-886 29-53 (645)
405 cd00729 rubredoxin_SM Rubredox 68.9 2.7 5.9E-05 27.3 1.1 9 875-883 19-27 (34)
406 KOG1814 Predicted E3 ubiquitin 68.5 4.4 9.5E-05 42.5 3.0 42 831-872 265-314 (445)
407 KOG1842 FYVE finger-containing 67.5 5.9 0.00013 42.0 3.7 33 838-870 179-215 (505)
408 smart00290 ZnF_UBP Ubiquitin C 67.3 3 6.4E-05 30.0 1.2 24 841-864 1-24 (50)
409 PHA02565 49 recombination endo 67.2 2 4.3E-05 38.6 0.3 45 840-886 21-67 (157)
410 PF13094 CENP-Q: CENP-Q, a CEN 67.1 1.1E+02 0.0024 28.5 14.6 73 38-110 10-89 (160)
411 PF14369 zf-RING_3: zinc-finge 66.5 1.7 3.6E-05 28.5 -0.3 26 860-885 3-32 (35)
412 TIGR02300 FYDLN_acid conserved 66.4 2.5 5.3E-05 36.6 0.7 28 860-887 10-39 (129)
413 PF07754 DUF1610: Domain of un 66.4 1.6 3.5E-05 25.6 -0.3 8 875-882 17-24 (24)
414 COG1885 Uncharacterized protei 66.3 3 6.4E-05 34.2 1.0 14 873-886 48-61 (115)
415 PF06785 UPF0242: Uncharacteri 66.1 1.7E+02 0.0036 30.3 20.2 66 647-712 88-153 (401)
416 PF13913 zf-C2HC_2: zinc-finge 66.0 2.4 5.1E-05 25.3 0.4 13 875-887 3-15 (25)
417 KOG2789 Putative Zn-finger pro 66.0 3.1 6.7E-05 43.1 1.4 51 838-888 73-148 (482)
418 PF09889 DUF2116: Uncharacteri 66.0 3.6 7.7E-05 30.6 1.3 15 873-887 2-16 (59)
419 PF10497 zf-4CXXC_R1: Zinc-fin 65.8 5.2 0.00011 34.1 2.5 25 858-882 37-69 (105)
420 KOG2169 Zn-finger transcriptio 65.7 4.1 8.9E-05 47.4 2.5 55 835-889 302-360 (636)
421 PF14073 Cep57_CLD: Centrosome 65.5 1.2E+02 0.0026 28.5 23.2 26 740-765 125-150 (178)
422 PRK04406 hypothetical protein; 65.4 67 0.0015 25.5 8.5 19 618-636 13-31 (75)
423 PF04012 PspA_IM30: PspA/IM30 65.1 1.5E+02 0.0033 29.4 24.0 16 607-622 28-43 (221)
424 COG3677 Transposase and inacti 64.8 4.9 0.00011 35.8 2.2 44 832-888 23-67 (129)
425 PF14073 Cep57_CLD: Centrosome 64.6 1.3E+02 0.0028 28.4 22.2 24 761-784 125-148 (178)
426 PF07295 DUF1451: Protein of u 64.5 2.1 4.6E-05 38.8 -0.1 29 850-883 111-139 (146)
427 KOG1819 FYVE finger-containing 64.5 2 4.4E-05 45.4 -0.2 31 841-871 903-937 (990)
428 PRK02119 hypothetical protein; 64.5 59 0.0013 25.6 7.9 20 618-637 11-30 (73)
429 KOG1937 Uncharacterized conser 64.2 2.2E+02 0.0047 30.9 35.3 10 801-810 505-514 (521)
430 PF06785 UPF0242: Uncharacteri 63.6 1.9E+02 0.004 30.0 21.7 57 647-703 109-165 (401)
431 PF07106 TBPIP: Tat binding pr 63.4 41 0.00089 31.8 8.4 6 809-814 127-132 (169)
432 COG4338 Uncharacterized protei 63.3 2.3 4.9E-05 29.2 -0.1 12 874-885 12-23 (54)
433 PF09755 DUF2046: Uncharacteri 63.0 1.9E+02 0.0042 29.9 38.3 11 470-480 25-35 (310)
434 PF14446 Prok-RING_1: Prokaryo 62.8 6.8 0.00015 28.4 2.2 41 840-885 6-52 (54)
435 PLN02939 transferase, transfer 62.4 3.7E+02 0.0081 33.0 26.9 22 389-410 159-180 (977)
436 KOG4517 Uncharacterized conser 62.3 3.1 6.6E-05 34.5 0.5 42 841-885 69-117 (117)
437 COG2816 NPY1 NTP pyrophosphohy 61.5 3 6.4E-05 42.0 0.3 27 858-884 110-139 (279)
438 COG1592 Rubrerythrin [Energy p 61.4 3 6.4E-05 38.6 0.3 22 862-883 137-158 (166)
439 PF12777 MT: Microtubule-bindi 61.3 2.4E+02 0.0051 30.3 25.5 258 431-716 1-314 (344)
440 PRK04179 rpl37e 50S ribosomal 61.2 2.8 6E-05 31.0 0.0 23 859-881 17-39 (62)
441 COG4260 Membrane protease subu 61.2 3.6 7.9E-05 40.7 0.8 39 838-885 305-345 (345)
442 KOG0230 Phosphatidylinositol-4 60.3 3.1 6.8E-05 51.0 0.3 52 841-893 7-59 (1598)
443 PRK09343 prefoldin subunit bet 60.3 1.2E+02 0.0026 26.7 14.2 107 515-642 5-111 (121)
444 PF15358 TSKS: Testis-specific 59.9 2.4E+02 0.0052 30.0 25.7 261 618-880 127-457 (558)
445 KOG3362 Predicted BBOX Zn-fing 59.6 3.9 8.4E-05 35.9 0.7 32 841-873 120-152 (156)
446 PRK14890 putative Zn-ribbon RN 59.4 7.7 0.00017 28.6 2.0 38 841-881 9-55 (59)
447 PRK04406 hypothetical protein; 59.2 89 0.0019 24.8 8.7 56 713-768 3-58 (75)
448 KOG1818 Membrane trafficking a 59.2 2.9 6.4E-05 47.0 -0.2 39 842-880 168-217 (634)
449 KOG4577 Transcription factor L 59.0 3.3 7.1E-05 40.8 0.1 47 840-889 61-107 (383)
450 PRK12495 hypothetical protein; 58.6 14 0.0003 35.5 4.2 57 804-865 7-64 (226)
451 KOG2807 RNA polymerase II tran 58.5 3.3 7.1E-05 41.8 0.0 45 840-884 291-355 (378)
452 PF07058 Myosin_HC-like: Myosi 58.3 2.2E+02 0.0048 29.1 18.4 190 688-894 2-196 (351)
453 KOG4218 Nuclear hormone recept 58.3 4.9 0.00011 40.7 1.2 38 842-881 18-74 (475)
454 TIGR02098 MJ0042_CXXC MJ0042 f 58.3 4.4 9.5E-05 27.1 0.6 32 839-884 2-35 (38)
455 PF03915 AIP3: Actin interacti 58.2 2.9E+02 0.0063 30.4 19.1 240 570-812 44-320 (424)
456 PRK00564 hypA hydrogenase nick 58.2 3.5 7.5E-05 36.1 0.1 26 858-883 70-97 (117)
457 KOG3726 Uncharacterized conser 58.2 5.7 0.00012 44.7 1.8 37 841-881 656-696 (717)
458 smart00647 IBR In Between Ring 58.1 5.1 0.00011 30.5 1.1 47 829-877 8-64 (64)
459 PRK00420 hypothetical protein; 58.0 3.7 8E-05 35.1 0.3 27 862-888 26-54 (112)
460 PF05276 SH3BP5: SH3 domain-bi 58.0 2.1E+02 0.0045 28.7 26.0 213 482-695 7-221 (239)
461 TIGR03830 CxxCG_CxxCG_HTH puta 57.9 2.7 5.9E-05 37.5 -0.6 36 842-884 1-41 (127)
462 PRK11827 hypothetical protein; 57.6 5.1 0.00011 29.9 0.9 44 834-894 3-46 (60)
463 TIGR03017 EpsF chain length de 57.5 3.2E+02 0.0068 30.6 27.0 205 575-783 144-369 (444)
464 KOG3475 60S ribosomal protein 57.5 4.1 8.8E-05 31.9 0.4 25 859-883 16-40 (92)
465 PF04102 SlyX: SlyX; InterPro 57.1 76 0.0017 24.6 7.4 52 718-769 1-52 (69)
466 PF04102 SlyX: SlyX; InterPro 57.0 72 0.0016 24.8 7.2 52 613-664 1-52 (69)
467 PRK09841 cryptic autophosphory 57.0 4.2E+02 0.0092 31.9 17.4 137 619-755 256-397 (726)
468 PRK00418 DNA gyrase inhibitor; 56.9 8 0.00017 29.0 1.8 22 871-892 3-27 (62)
469 PRK03947 prefoldin subunit alp 56.9 1.5E+02 0.0033 26.8 14.3 94 650-743 5-137 (140)
470 PF04012 PspA_IM30: PspA/IM30 56.7 2.1E+02 0.0046 28.3 23.0 172 581-756 3-186 (221)
471 PF15254 CCDC14: Coiled-coil d 56.5 3.9E+02 0.0085 31.4 27.1 202 609-810 334-555 (861)
472 PRK00420 hypothetical protein; 56.4 4.4 9.6E-05 34.7 0.5 22 841-865 25-46 (112)
473 PF13465 zf-H2C2_2: Zinc-finge 56.3 3.4 7.3E-05 24.9 -0.2 13 873-885 13-25 (26)
474 smart00249 PHD PHD zinc finger 56.2 4.2 9.1E-05 28.3 0.3 40 841-880 1-47 (47)
475 PRK14892 putative transcriptio 55.9 6.5 0.00014 32.9 1.3 44 835-893 17-60 (99)
476 COG2331 Uncharacterized protei 55.8 4.5 9.8E-05 31.1 0.4 30 853-884 14-43 (82)
477 PF15397 DUF4618: Domain of un 55.8 2.3E+02 0.0051 28.6 29.8 224 381-660 1-230 (258)
478 KOG0006 E3 ubiquitin-protein l 55.7 6.7 0.00015 39.3 1.6 31 857-887 342-410 (446)
479 KOG2751 Beclin-like protein [S 55.5 3E+02 0.0066 29.8 16.2 125 660-786 145-269 (447)
480 PF08581 Tup_N: Tup N-terminal 55.4 1.1E+02 0.0023 24.6 12.2 77 739-818 1-77 (79)
481 PF14311 DUF4379: Domain of un 55.2 7.2 0.00016 28.7 1.4 21 857-880 34-55 (55)
482 KOG2264 Exostosin EXT1L [Signa 55.1 1.1E+02 0.0024 33.9 10.5 70 716-785 81-150 (907)
483 KOG0396 Uncharacterized conser 55.1 6 0.00013 41.1 1.2 54 841-894 306-388 (389)
484 KOG4080 Mitochondrial ribosoma 55.0 7.2 0.00016 35.2 1.6 32 833-871 87-118 (176)
485 KOG4809 Rab6 GTPase-interactin 55.0 3.4E+02 0.0075 30.3 35.9 347 39-484 219-565 (654)
486 PRK02119 hypothetical protein; 55.0 1E+02 0.0022 24.3 7.9 56 707-762 2-57 (73)
487 KOG2264 Exostosin EXT1L [Signa 54.7 97 0.0021 34.3 10.0 71 597-667 81-151 (907)
488 PF15290 Syntaphilin: Golgi-lo 54.7 2.4E+02 0.0053 28.5 15.8 111 639-749 63-173 (305)
489 KOG3623 Homeobox transcription 54.6 12 0.00026 42.4 3.4 61 827-887 228-322 (1007)
490 PRK00398 rpoP DNA-directed RNA 54.5 2.9 6.4E-05 29.4 -0.7 27 858-884 1-31 (46)
491 COG2093 DNA-directed RNA polym 54.0 6.2 0.00013 29.2 0.8 25 862-887 7-32 (64)
492 PRK00295 hypothetical protein; 54.0 1E+02 0.0022 23.9 8.0 51 614-664 3-53 (68)
493 COG4068 Uncharacterized protei 53.9 8.3 0.00018 27.9 1.4 17 873-889 7-23 (64)
494 smart00531 TFIIE Transcription 53.8 6.9 0.00015 35.9 1.4 36 853-888 101-137 (147)
495 cd01407 SIR2-fam SIR2 family o 53.8 13 0.00027 37.0 3.3 43 845-887 103-146 (218)
496 TIGR03752 conj_TIGR03752 integ 53.7 1.9E+02 0.0041 31.9 12.1 81 639-719 61-142 (472)
497 PRK04325 hypothetical protein; 53.7 1.1E+02 0.0024 24.2 8.1 52 612-663 5-56 (74)
498 PF05266 DUF724: Protein of un 53.5 2.2E+02 0.0047 27.5 13.9 90 686-775 96-185 (190)
499 PF00096 zf-C2H2: Zinc finger, 53.4 4.5 9.7E-05 23.3 0.0 10 877-886 3-12 (23)
500 PF13824 zf-Mss51: Zinc-finger 53.3 5.8 0.00013 28.8 0.6 24 861-884 1-24 (55)
No 1
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-46 Score=405.10 Aligned_cols=683 Identities=31% Similarity=0.430 Sum_probs=537.5
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 002676 167 ALASRHSSARELMKFIEEVIDAQRVKTKSIAEAFHEKLSAEDAIIQLSKIDDMMKEEAKNLHEVMEIIHLKHKEYADQIE 246 (894)
Q Consensus 167 ~l~~r~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~e~~~l~~~l~~l~~~~~~~~~~l~ 246 (894)
.+..++...+...+.....+|.++...+.+...... +...+......+..++..|+..+..++.++..+...+.
T Consensus 6 ~~~~~i~~~~~~~~~~~~~~D~lq~~~e~~~~~~~~------~~e~l~~~~~~L~~e~e~Lq~~~~~~~~~~~~~~~~~~ 79 (698)
T KOG0978|consen 6 PLAGRIKSEKEAVSLVLIQIDDLQTQAEELARRLNR------VEEALTVLFDELAEENEKLQNLADHLQEKHATLSEQIS 79 (698)
T ss_pred hhHHHHHhhhhhhcccchhhHHHHHHHHHHHhhhhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555666666556666665555555444442 44567778888999999999999999999999999999
Q ss_pred HHhhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccccccccccCCCCCCCCCcccccchHHHHHH
Q 002676 247 NYISSHSVDQAEIQHLAGELEETMAELEESRRKLVSLKMQKDIASGTHSLVPAAAMVNGSVSPEKRPADGRMDLQELKDS 326 (894)
Q Consensus 247 ~~~~~~~~~~~e~~~l~~~l~~~~~el~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~ 326 (894)
.+.+.++....+...+...++.+.++++........+......... +..++|+++...+..+.-....+..+...
T Consensus 80 el~~k~s~~~~~~~e~~~~le~~~~d~eki~~~~~~l~~~la~~~~-----~~~t~~~~~~~~~~~~t~~~t~~~~l~~~ 154 (698)
T KOG0978|consen 80 ELLDKISTAETEVDELEQQLEDLQADLEKIRRRSNKLNKHLAEALE-----HLNTYGNGNGSLSGTITVNSTELEELRDE 154 (698)
T ss_pred HHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhc-----cCCCCCCcccccCcccccchhhhhhhccc
Confidence 9999999999999999999999999999999887777433333221 11122333222222245555668888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhhchh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002676 327 VEEAKILAADRLSEVEEAQQDNINLSKQLENLQNELNDDKYVHSSRL--YNLVNDQLQHWNVEVERYKALTDSLLIDRSL 404 (894)
Q Consensus 327 l~~~~~~~~~~~~el~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~--~~~l~~~l~~l~~el~~~~~~~~~l~~e~~~ 404 (894)
++++......+..+++.++.....+..++..++..+..+........ +..++ +...+..-..+.+
T Consensus 155 iee~~~~~~~~~~ele~lq~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~------------~NE~l~~~~~~~~- 221 (698)
T KOG0978|consen 155 IEELRELASTRMEELEKLQLYSDEILRQLDRFRVELRSLKEKVRSETFELRCLQ------------YNEELQRKTMESD- 221 (698)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH------------hhhhcccccchhh-
Confidence 99999999999999999999999999998888887743321111110 00000 1111100000000
Q ss_pred HHHHHHHHHHhhchHHHHHchhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHHHHHHHH
Q 002676 405 VLRREKEINVRAESADAARNTVDDSESRIERLEVQLQKSIIEKNDLGLKMEEAIQDSG-RKDIKAEFRVMASALSKEMGM 483 (894)
Q Consensus 405 l~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~l~~~l~~~~~el~~l~~~~~~~~~~~~-~~~~~~el~~~~~~l~~~~~~ 483 (894)
++ .....+..+.+.+..+..+++.+....+......+ ...+..++..+.+.+..+...
T Consensus 222 ------e~---------------~~~~~~~~lee~~~~~~~e~~~l~~~~e~~~~~~~~~~~in~e~~~L~Ssl~e~~~~ 280 (698)
T KOG0978|consen 222 ------EA---------------INSKKVIKLEEKLAQCVKEYEMLRKEFENNKSQNDLFSSINREMRHLISSLQEHEKL 280 (698)
T ss_pred ------hh---------------hccchHHHHHHHHHHHHHHHHHHHHhHHHhHHhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 00 00233677888888899999999988888777666 679999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhhhHHhHHhhhhhHHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHhccCCC
Q 002676 484 MEAQLNRWKETADEALSLREKAVSLKVSLSAKTNEQKRLTDKCVEQMAEIKSLK-ALIEKLQKDKLESQIMLDMYGQEGR 562 (894)
Q Consensus 484 l~~~~~~~~~~~~~l~~l~~~~~~l~~~l~~~~~e~~~l~~~~~~~~~~l~~l~-~~~~~l~~~~~~l~~~~~~~~~~~~ 562 (894)
+.+...+|.+....+..++....++...+.........+...+..+...+..+. .-...+......++.....+.....
T Consensus 281 l~~~~~~~k~t~~~~~~lr~~~~s~~~~~~~~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 360 (698)
T KOG0978|consen 281 LKEYERELKDTESDNLKLRKQHSSAADSLESKSRDLESLLDKIQDLISQEAELSKKLRSKLLESAKKLKILLREKDRESQ 360 (698)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhh
Confidence 999889999999999999999999888887766677777777777777777766 3444455555666666666666666
Q ss_pred CcccHHHHHHHHHH-HHHHHHHHHHhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhHH---HHHHHHH
Q 002676 563 DPRDLMEIKESERR-AHSQAEVLKNALDEHSLELRVKAANEAEAACQQRLSAAEAEIIELV-AKLDASER---DVMELEE 637 (894)
Q Consensus 563 ~~~~i~~l~~~~~~-~~~~~~~l~~~l~~~~~e~~~~~~~~~~~~l~~~i~~le~el~~l~-~~~~~~~~---~~~~l~~ 637 (894)
..+++.....+... .+..+..+...+.....++.+....+.....+.-....+.+...++ ...+...+ +...+..
T Consensus 361 k~~di~~~k~el~~~~~~~le~~k~~~ke~~~~~~~ka~~E~e~l~q~l~~~~k~e~~e~~k~~~d~~~r~~~~~~~~~e 440 (698)
T KOG0978|consen 361 KERDILVAKSELLKTNELRLEMLKSLLKEQRDKLQVKARAETESLLQRLKALDKEERSEIRKQALDDAERQIRQVEELSE 440 (698)
T ss_pred hhHhHHHHHHHHHHHHHHHHHHHhCCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHH
Confidence 66666666555444 6666666655555554443333333333334444444555555555 34444455 4555566
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002676 638 AMKSKDREAEAYIAEMETIGQAFEDMQTQNQHLLQQVAERDDLNIKLVSESVKTKQVQSFLLSEKQALARQLQQINALVE 717 (894)
Q Consensus 638 ~l~~~~~~~~~l~~e~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~e~~~~~~~~~~l~~e~~~l~~~l~~l~~~~~ 717 (894)
.|.........+..++..++.++++++.++..+..++.+.++...+++.+...+.+.+..+..++..+..++..+....+
T Consensus 441 ~Lqk~~~~~k~ll~e~~t~gsA~ed~Qeqn~kL~~el~ekdd~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~~~~ 520 (698)
T KOG0978|consen 441 ELQKKEKNFKCLLSEMETIGSAFEDMQEQNQKLLQELREKDDKNFKLMSERIKANQKHKLLREEKSKLEEQILTLKASVD 520 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777788889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002676 718 SAKLRILHAEEQMKACLTEALRYNSEDRHLAVNLETTKWELADAEKELKWLKSAVTSSDKEYEQIQRKTEDMRKELENER 797 (894)
Q Consensus 718 ~~~~~~~~l~~~l~~~~~~~~~l~~e~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~el~~~~~~l~e~~~~l~~~~ 797 (894)
.+...+..++++.+.+......+..++..+...++.+.+.+.++...+..++..+......+.++...+.+...+++...
T Consensus 521 ~~~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~ 600 (698)
T KOG0978|consen 521 KLELKIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEK 600 (698)
T ss_pred HHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhh-HHHHHHHHHHhcccccccccccccccCCcccccCCCcccHhHHhHhhccCCCC
Q 002676 798 NERKKLEEELMEVNNKVAELTSETGE-AAIQKLQDEIKDCKAILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRK 876 (894)
Q Consensus 798 ~~~~~l~~~i~~l~~~i~~l~~~~~~-~~~~~L~ee~~~l~~~l~C~iC~~~~~~~v~~~CgH~fC~~C~~~~~~~~~~~ 876 (894)
+...++++++..|++++.+++....+ .....|.+++..|+.+++||+|+.+|+++||++|||+||+.|+++++.+|+|+
T Consensus 601 ~k~~rleEE~e~L~~kle~~k~~~~~~s~d~~L~EElk~yK~~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRqRK 680 (698)
T KOG0978|consen 601 FKRKRLEEELERLKRKLERLKKEESGASADEVLAEELKEYKELLKCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQRK 680 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccccccHHHHHHHHHHHhceeCCCccCchhhHHHHhcchHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999887 78999999999999999999999999999999999999999999999999999
Q ss_pred ccCcCCCCCCCCcccccC
Q 002676 877 CPGCGTAFGQSDVRFVKI 894 (894)
Q Consensus 877 CP~C~~~~~~~d~~~~~~ 894 (894)
||.|+++||++||+||||
T Consensus 681 CP~Cn~aFganDv~~I~l 698 (698)
T KOG0978|consen 681 CPKCNAAFGANDVHRIHL 698 (698)
T ss_pred CCCCCCCCCcccccccCC
Confidence 999999999999999997
No 2
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.88 E-value=1.1e-14 Score=182.02 Aligned_cols=718 Identities=13% Similarity=0.143 Sum_probs=349.3
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHhhhhhHHHHHHHHHhhcCCCCCCcccCCCcCccCCCCCCCCChhHHHHHHhhhcc
Q 002676 72 QSLEAKIKELQEKQTSYDEMLITVNQLWNLFVDDLILLGVRAGGGSNVLQKLDSENQTRDSIPSGPPEDMFLCRLLQVNS 151 (894)
Q Consensus 72 ~~L~~~~~~l~~k~~~~~~~l~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 151 (894)
.+|...+.+|..++..+...+..++.....+...+..+....+ ......|.
T Consensus 301 eEL~~ll~~f~~~~~e~~~~~~~le~e~~~l~~el~~l~~~~~-----------------------------~l~~e~gk 351 (1311)
T TIGR00606 301 EQLNDLYHNHQRTVREKERELVDCQRELEKLNKERRLLNQEKT-----------------------------ELLVEQGR 351 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------HHHHHHHH
Confidence 4455555556666666666666666666666666666665554 34445566
Q ss_pred ccCCCcccchHHHHHHHHhhHHHHHHHHHHHH-HHHHHH---HHhhHhhHHHHHhccChhhHHHHHHHHHHHHHHHHHHH
Q 002676 152 IESSSKDGILQYVEEALASRHSSARELMKFIE-EVIDAQ---RVKTKSIAEAFHEKLSAEDAIIQLSKIDDMMKEEAKNL 227 (894)
Q Consensus 152 ~~~~~~~~~~~~~ee~l~~r~~~~~~~~~~l~-~~~~~~---~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~e~~~l 227 (894)
+++. ...++..+..+...+........ ..++.. ...+..+...+.. ...+....+......+...+..+
T Consensus 352 l~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~e~~~~~~~~ 424 (1311)
T TIGR00606 352 LQLQ-----ADRHQEHIRARDSLIQSLATRLELDGFERGPFSERQIKNFHTLVIE--RQEDEAKTAAQLCADLQSKERLK 424 (1311)
T ss_pred HHHH-----HHHHHHHHHHHHHHHHHHHHhcCcCCCCCcccchHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 6555 66677777777666666555422 111100 0001111111111 11233345555666666666666
Q ss_pred HHHHHHHHHhhHHHHHHHHHHhhhhhhhHHHHHHHHhhHHHH---HHHHHHHHHHHHHHHhhhhhhcCCccccccccccc
Q 002676 228 HEVMEIIHLKHKEYADQIENYISSHSVDQAEIQHLAGELEET---MAELEESRRKLVSLKMQKDIASGTHSLVPAAAMVN 304 (894)
Q Consensus 228 ~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~e~~~l~~~l~~~---~~el~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 304 (894)
+..+..+...+......+......+......+..+..++..+ ...+..+...+..+............
T Consensus 425 q~~L~ei~~~l~~~eq~~~~~~e~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 495 (1311)
T TIGR00606 425 QEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSDRILELDQELRKAERELSKAEKNSL--------- 495 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHHHHHhhhh---------
Confidence 666666666666666666666666666666666666555544 23444444444444322222111111
Q ss_pred CCCCCCCCCcccccchHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hHh--------h
Q 002676 305 GSVSPEKRPADGRMDLQELKDSVEEAKILAA------DRLSEVEEAQQDNINLSKQLENLQNELNDD-KYV--------H 369 (894)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~------~~~~el~~l~~~~~~l~~~~~~l~~~l~~~-~~~--------~ 369 (894)
...-... +......+..++..+..+...+. ....++.-+..++......+..+.....+. ... .
T Consensus 496 ~~~~~~~-i~~~~~~~~~le~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~ 574 (1311)
T TIGR00606 496 TETLKKE-VKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSLLGYFPNKKQ 574 (1311)
T ss_pred hhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHH
Confidence 0000011 22233333344444433333321 122223333333333333333333332110 000 0
Q ss_pred hchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHc---hhcchhhHHHHHHHHHHHHHHH
Q 002676 370 SSRLYNLVNDQLQHWNVEVERYKALTDSLLIDRSLVLRREKEINVRAESADAARN---TVDDSESRIERLEVQLQKSIIE 446 (894)
Q Consensus 370 ~~~~~~~l~~~l~~l~~el~~~~~~~~~l~~e~~~l~~~~~~~~~~~e~~~~~~~---~~~~~~~~~~~l~~~l~~~~~e 446 (894)
....+..+...+..+......+...+..+...+..+...+......+........ ...++...+..++..+.....+
T Consensus 575 l~~~~~~~~~el~~~~~~~~~~~~el~~~e~~l~~~~~~l~~~~~eL~~~~~~i~~~~~~~~~~~~L~~~~~~l~~~~~~ 654 (1311)
T TIGR00606 575 LEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFDVCGSQDEESDLERLKEEIEKSSKQ 654 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHH
Confidence 0112233333444444444444444444444444444444444433333222222 2234566777777888777777
Q ss_pred HHHHHHHHHHHHHhcC--------------C--------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002676 447 KNDLGLKMEEAIQDSG--------------R--------KDIKAEFRVMASALSKEMGMMEAQLNRWKETADEALSLREK 504 (894)
Q Consensus 447 l~~l~~~~~~~~~~~~--------------~--------~~~~~el~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~l~~~ 504 (894)
+..+......+..-.. + ..+...+......+......+...+..+......+..++..
T Consensus 655 ~~~~~~~~~~~~k~ie~a~~~~~~~C~LC~R~f~~eee~~~f~~~L~~~~~~~p~~~~~~~~~~~~~~~~~e~l~~l~~~ 734 (1311)
T TIGR00606 655 RAMLAGATAVYSQFITQLTDENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPG 734 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCcCCCCCCCCCChhHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 7766655444321111 0 13344444444444444555555555555555555555554
Q ss_pred HHhhhHhhhhhhHHhHHhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhccCCCCcccHHHHHHHHHHHHHHHHHH
Q 002676 505 AVSLKVSLSAKTNEQKRLTDKCVEQMAEIKSLKALIEKLQKDKLESQIMLDMYGQEGRDPRDLMEIKESERRAHSQAEVL 584 (894)
Q Consensus 505 ~~~l~~~l~~~~~e~~~l~~~~~~~~~~l~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~l 584 (894)
+..+... ...+++.+...+..+...+..+...+..+...+..+...++.......++..+..+..++..+..++..+
T Consensus 735 ~~~~~~l---~~~eip~l~~~l~~le~~l~~~~~~le~~~~~l~~~~~~~~~~esL~~~v~~i~r~~~ei~~l~~qie~l 811 (1311)
T TIGR00606 735 RQSIIDL---KEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQ 811 (1311)
T ss_pred HHHHHHH---HHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444311 1234556666666666666666666666666666666666555555555556777888888888888888
Q ss_pred HHhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHH---HHHHHHHHHHHHHHHHHH
Q 002676 585 KNALDEHSLELRVKAANEAEAACQQRLSAAEAEIIELVAKLDASERDVMELEEAMKSKD---REAEAYIAEMETIGQAFE 661 (894)
Q Consensus 585 ~~~l~~~~~e~~~~~~~~~~~~l~~~i~~le~el~~l~~~~~~~~~~~~~l~~~l~~~~---~~~~~l~~e~~~l~~~~~ 661 (894)
...+........+..+......+..++..+..++..+.........++..|...+..+. ..+.........+...+.
T Consensus 812 ~~~l~~~~~~~s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl~~~l~~r~~le~~L~ 891 (1311)
T TIGR00606 812 AAKLQGSDLDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLV 891 (1311)
T ss_pred HHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77776544433456666777777777777777777777777777777666644333322 222222223344444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH---------------H
Q 002676 662 DMQTQNQHLLQQVAERDDLNIKLVSESVKTKQVQSFLLSEKQ----ALARQLQQINALVESAKL---------------R 722 (894)
Q Consensus 662 ~~~~~~~~l~~~l~~~~~~~~~l~~e~~~~~~~~~~l~~e~~----~l~~~l~~l~~~~~~~~~---------------~ 722 (894)
.+...+..+...+..++..+..+..++..+...+..+..... .+...+..+...+..+.. .
T Consensus 892 el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~y~~~~~~~q 971 (1311)
T TIGR00606 892 ELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDGKDDY 971 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH
Confidence 555555555555555555555544444444444322222111 111122222222111111 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002676 723 ILHAEEQMKACLTEALRYNSEDRHLAVNLETTKWELADAEKELKWLKSAVTSS--DKEYEQIQRKTEDMRKELENERNER 800 (894)
Q Consensus 723 ~~~l~~~l~~~~~~~~~l~~e~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~--~~el~~~~~~l~e~~~~l~~~~~~~ 800 (894)
+..++..+..+...+..+..++..+...+..+...+..+......+...+... ..++..+...+..+..++.. ..+
T Consensus 972 L~~~e~el~~~~~~ie~le~e~~~l~~~i~~l~kel~~~~~~kr~l~dnL~~~~~~~~l~el~~eI~~l~~~~~~--~~~ 1049 (1311)
T TIGR00606 972 LKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTLRKRENELKEVEEELKQHLKEMGQ--MQV 1049 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ccH
Confidence 23333333333333444444444444444444444444444444444444433 44444444444444333222 234
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhh--HHHHHHHHHHhcccccc
Q 002676 801 KKLEEELMEVNNKVAELTSETGE--AAIQKLQDEIKDCKAIL 840 (894)
Q Consensus 801 ~~l~~~i~~l~~~i~~l~~~~~~--~~~~~L~ee~~~l~~~l 840 (894)
..+..+...+..++..+.....+ |.+..++.++..+...+
T Consensus 1050 ~~~~~e~~~l~~~~~~l~~~~a~l~g~~k~le~qi~~l~~eL 1091 (1311)
T TIGR00606 1050 LQMKQEHQKLEENIDLIKRNHVLALGRQKGYEKEIKHFKKEL 1091 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666666666666666555 55555555555555444
No 3
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.87 E-value=5.8e-14 Score=170.63 Aligned_cols=70 Identities=17% Similarity=0.175 Sum_probs=60.3
Q ss_pred chhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhhhhhHHHHHHHHHhhcCCCCC
Q 002676 49 DSAVLQYQNQKLVQQLDSQKHELQSLEAKIKELQEKQTSYDEMLITVNQLWNLFVDDLILLGVRAGGGSN 118 (894)
Q Consensus 49 d~~~lq~~~~~l~~~l~~~~~~~~~L~~~~~~l~~k~~~~~~~l~~~~~~~~~l~~~l~~l~~~~~~~~~ 118 (894)
++.-++-++.....-+...++.+.+|+.+|..+.+.+.....++..+++...+|..++..+..++....+
T Consensus 1077 El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~Lee~~~ 1146 (1930)
T KOG0161|consen 1077 ELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKEELEEQGG 1146 (1930)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445666677777778888889999999999999999999999999999999999999999988885543
No 4
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.85 E-value=4.7e-12 Score=154.34 Aligned_cols=41 Identities=22% Similarity=0.209 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHhhhhhHHHHHHHHHhh
Q 002676 72 QSLEAKIKELQEKQTSYDEMLITVNQLWNLFVDDLILLGVR 112 (894)
Q Consensus 72 ~~L~~~~~~l~~k~~~~~~~l~~~~~~~~~l~~~l~~l~~~ 112 (894)
..++..+..+.+.....+.++..+....+.....|..+..+
T Consensus 932 ~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e 972 (1930)
T KOG0161|consen 932 RKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEE 972 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444444433
No 5
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.77 E-value=1.8e-10 Score=146.78 Aligned_cols=22 Identities=18% Similarity=0.332 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHhhhhhhhh
Q 002676 800 RKKLEEELMEVNNKVAELTSET 821 (894)
Q Consensus 800 ~~~l~~~i~~l~~~i~~l~~~~ 821 (894)
...+...+..+..++..++++|
T Consensus 953 ~~~l~~~l~~l~~~i~~l~~vN 974 (1164)
T TIGR02169 953 LEDVQAELQRVEEEIRALEPVN 974 (1164)
T ss_pred HHHHHHHHHHHHHHHHHcCCCC
Confidence 3466677777777888887776
No 6
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=99.77 E-value=4.5e-11 Score=147.92 Aligned_cols=22 Identities=18% Similarity=0.302 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHhhhhhhhhhh
Q 002676 802 KLEEELMEVNNKVAELTSETGE 823 (894)
Q Consensus 802 ~l~~~i~~l~~~i~~l~~~~~~ 823 (894)
.++..+..++..+..++++|..
T Consensus 946 ~~~~~i~~le~~i~~lg~VN~~ 967 (1163)
T COG1196 946 ELEREIERLEEEIEALGPVNLR 967 (1163)
T ss_pred HHHHHHHHHHHHHHhccCCChh
Confidence 4667777777778888888743
No 7
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.73 E-value=4e-09 Score=134.88 Aligned_cols=33 Identities=18% Similarity=0.171 Sum_probs=17.8
Q ss_pred HHHHHHhhhhhhHHHHHHHhhhhhHHHHHHHHH
Q 002676 78 IKELQEKQTSYDEMLITVNQLWNLFVDDLILLG 110 (894)
Q Consensus 78 ~~~l~~k~~~~~~~l~~~~~~~~~l~~~l~~l~ 110 (894)
+..|..+.......|..++..+..+...+..+.
T Consensus 167 ~~~~~~~~~~t~~nL~r~~d~l~el~~ql~~L~ 199 (1179)
T TIGR02168 167 ISKYKERRKETERKLERTRENLDRLEDILNELE 199 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555555443
No 8
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.72 E-value=2.8e-09 Score=136.36 Aligned_cols=15 Identities=13% Similarity=0.189 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHHH
Q 002676 174 SARELMKFIEEVIDA 188 (894)
Q Consensus 174 ~~~~~~~~l~~~~~~ 188 (894)
.+...+.++.+.+..
T Consensus 176 ~t~~nL~r~~d~l~e 190 (1179)
T TIGR02168 176 ETERKLERTRENLDR 190 (1179)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 9
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=99.72 E-value=7.7e-09 Score=124.42 Aligned_cols=127 Identities=17% Similarity=0.188 Sum_probs=62.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002676 430 ESRIERLEVQLQKSIIEKNDLGLKMEEAIQDSGRKDIKAEFRVMASALSKEMGMMEAQLNRWKETADEALSLREKAVSLK 509 (894)
Q Consensus 430 ~~~~~~l~~~l~~~~~el~~l~~~~~~~~~~~~~~~~~~el~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~l~~~~~~l~ 509 (894)
+.++..+..++..+..++..+......+..... .+...+......+..........+..+.+....+..++.++..+.
T Consensus 996 e~~~~~~~~e~~sl~ne~~~~~~~~s~~~~~~~--~~k~dl~~~~~~~~~a~~~Ye~el~~ha~~~q~l~kl~ee~~~~~ 1073 (1822)
T KOG4674|consen 996 EDKLLDLSREISSLQNELKSLLKAASQANEQIE--DLQNDLKTETEQLRKAQSKYESELVQHADLTQKLIKLREEFAKCN 1073 (1822)
T ss_pred hhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666666666666655555444444 444444444444444444444445555555555555555555555
Q ss_pred HhhhhhhHHhHHh-----------hhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhc
Q 002676 510 VSLSAKTNEQKRL-----------TDKCVEQMAEIKSLKALIEKLQKDKLESQIMLDMYG 558 (894)
Q Consensus 510 ~~l~~~~~e~~~l-----------~~~~~~~~~~l~~l~~~~~~l~~~~~~l~~~~~~~~ 558 (894)
..+..+....... ...-..+..++..+...+..|......+...++.+.
T Consensus 1074 ~e~~~Lk~~~~~~~~~l~e~~~~w~E~~~~Leqe~~~~~~~~~~L~~qNslLh~qie~~s 1133 (1822)
T KOG4674|consen 1074 DELLKLKKSRESRHALLSEQERDWSEKEDALEQEVNELKKRIESLEKQNSLLHDQFEELS 1133 (1822)
T ss_pred HHHHHHHhhHHHHHhHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444443322221 122233444444455555555555555555554443
No 10
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=99.70 E-value=5.5e-09 Score=118.35 Aligned_cols=75 Identities=20% Similarity=0.126 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh--HHHHHHHHHHhcccc----cccccccccccCCc
Q 002676 779 YEQIQRKTEDMRKELENERNERKKLEEELMEVNNKVAELTSETGE--AAIQKLQDEIKDCKA----ILKCGVCFDRPKEV 852 (894)
Q Consensus 779 l~~~~~~l~e~~~~l~~~~~~~~~l~~~i~~l~~~i~~l~~~~~~--~~~~~L~ee~~~l~~----~l~C~iC~~~~~~~ 852 (894)
+......+.....++......+....+.+..|++. +|..++.| .+...|++.|+++.. .+.--=-.++|..-
T Consensus 1101 Y~~k~~~y~~rv~~l~~~t~kr~~~re~l~~Lrk~--RldEFm~gf~~Is~kLkemYQmIT~GGdAeLElVDslDPFseG 1178 (1293)
T KOG0996|consen 1101 YAKKVELYLKRVAELEKFTQKRDEHREKLEELRKR--RLDEFMAGFNIISMKLKEMYQMITLGGDAELELVDSLDPFSEG 1178 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhcCCcceeEeeccCCCcccC
Confidence 33333344444455666777788888999999888 89999999 677889999998742 22222245666664
Q ss_pred ccc
Q 002676 853 VIT 855 (894)
Q Consensus 853 v~~ 855 (894)
|++
T Consensus 1179 V~F 1181 (1293)
T KOG0996|consen 1179 VMF 1181 (1293)
T ss_pred ceE
Confidence 433
No 11
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=99.70 E-value=1.3e-08 Score=122.53 Aligned_cols=72 Identities=17% Similarity=0.193 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhH--HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 002676 567 LMEIKESERRAHSQAEVLKNALDEHSL--ELRVKAANEAEAACQQRLSAAEAEIIELVAKLDASERDVMELEEA 638 (894)
Q Consensus 567 i~~l~~~~~~~~~~~~~l~~~l~~~~~--e~~~~~~~~~~~~l~~~i~~le~el~~l~~~~~~~~~~~~~l~~~ 638 (894)
+..+..+...+..++..|......... ..-...+......+..++..+...+..|..+..-+...+..+...
T Consensus 1062 l~kl~ee~~~~~~e~~~Lk~~~~~~~~~l~e~~~~w~E~~~~Leqe~~~~~~~~~~L~~qNslLh~qie~~s~~ 1135 (1822)
T KOG4674|consen 1062 LIKLREEFAKCNDELLKLKKSRESRHALLSEQERDWSEKEDALEQEVNELKKRIESLEKQNSLLHDQFEELSQQ 1135 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHhHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 444555555555555555332211110 012344445555566666666666666666555555555554443
No 12
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=99.70 E-value=4.3e-09 Score=130.52 Aligned_cols=79 Identities=29% Similarity=0.455 Sum_probs=31.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 002676 740 YNSEDRHLAVNLETTKWELADAEKELKWLKSAVTSSDKEYEQIQRKTEDMRKELENERNERKKLEEELMEVNNKVAELT 818 (894)
Q Consensus 740 l~~e~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~el~~~~~~l~e~~~~l~~~~~~~~~l~~~i~~l~~~i~~l~ 818 (894)
+..++..+..++..+...+..+...+..+...+..+..++......+..+...+.........+...+..+...+..+.
T Consensus 826 ~~~ei~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~ 904 (1163)
T COG1196 826 LEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELK 904 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333333344444444444444444444444444444444444443333
No 13
>PRK02224 chromosome segregation protein; Provisional
Probab=99.69 E-value=1.3e-09 Score=133.14 Aligned_cols=42 Identities=17% Similarity=0.341 Sum_probs=18.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002676 320 LQELKDSVEEAKILAADRLSEVEEAQQDNINLSKQLENLQNE 361 (894)
Q Consensus 320 ~~~le~~l~~~~~~~~~~~~el~~l~~~~~~l~~~~~~l~~~ 361 (894)
+..+...+..+...+......+..+...+..+..++..+...
T Consensus 260 ~~~l~~~i~~~e~~~~~l~~~i~~~~~~~~~le~e~~~l~~~ 301 (880)
T PRK02224 260 IEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAE 301 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444443
No 14
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.67 E-value=4.8e-08 Score=122.88 Aligned_cols=106 Identities=12% Similarity=0.139 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002676 709 LQQINALVESAKLRILHAEEQMKACLTEALRYNSEDRHL--AVNLETTKWELADAEKELKWLKSAVTSSDKEYEQIQRKT 786 (894)
Q Consensus 709 l~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~e~~~~--~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~el~~~~~~l 786 (894)
+..++..+..+...+..+...+.........+...+..+ ...+..+..++..+..++.... ...+..+...+..++
T Consensus 986 ie~le~e~~~l~~~i~~l~kel~~~~~~kr~l~dnL~~~~~~~~l~el~~eI~~l~~~~~~~~--~~~~~~e~~~l~~~~ 1063 (1311)
T TIGR00606 986 LEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTLRKRENELKEVEEELKQHLKEMGQMQ--VLQMKQEHQKLEENI 1063 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--HHHHHHHHHHHHHHH
Confidence 333333333333333333334444433333344433333 4444444444444444444332 245666666677777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002676 787 EDMRKELENERNERKKLEEELMEVNNKVAE 816 (894)
Q Consensus 787 ~e~~~~l~~~~~~~~~l~~~i~~l~~~i~~ 816 (894)
..+.............++.++..++..++.
T Consensus 1064 ~~l~~~~a~l~g~~k~le~qi~~l~~eL~e 1093 (1311)
T TIGR00606 1064 DLIKRNHVLALGRQKGYEKEIKHFKKELRE 1093 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 666666666667777788888888777743
No 15
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=99.67 E-value=5.2e-18 Score=199.21 Aligned_cols=213 Identities=18% Similarity=0.157 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhhhhhHHHHHHHHHhhcCCCCCCcccCCCcCccCCC
Q 002676 53 LQYQNQKLVQQLDSQKHELQSLEAKIKELQEKQTSYDEMLITVNQLWNLFVDDLILLGVRAGGGSNVLQKLDSENQTRDS 132 (894)
Q Consensus 53 lq~~~~~l~~~l~~~~~~~~~L~~~~~~l~~k~~~~~~~l~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 132 (894)
+..+...-.......++.+.+|+++|..|++.+.........+++...+|..+|..|..++...++.+.....+.
T Consensus 23 ~~~~~e~e~~~~~~l~k~~kelq~~i~el~eeLe~Er~~R~kaek~r~dL~~ELe~l~~~Lee~~~~t~aq~E~~----- 97 (859)
T PF01576_consen 23 LNSKLEDEQALRAQLQKKIKELQARIEELEEELESERQARAKAEKQRRDLSEELEELKERLEEAGGATQAQIELN----- 97 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHhhHHHH-----
Confidence 333333334444455667889999999999999999999999999999999999999999998887765554333
Q ss_pred CCCCCChhHHHHHHhhhccccCCCcccchHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHhccChh-hHHH
Q 002676 133 IPSGPPEDMFLCRLLQVNSIESSSKDGILQYVEEALASRHSSARELMKFIEEVIDAQRVKTKSIAEAFHEKLSAE-DAII 211 (894)
Q Consensus 133 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ee~l~~r~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~ 211 (894)
.....+-.-|.+.++. +... ++..-..|..++......+...++.+....+..++....+...+... ....
T Consensus 98 -kkrE~El~~Lrr~LEe----~~~~---~e~~~~~lrkkh~~~~~eL~eqle~lqk~k~~lEK~k~~l~~e~~dL~~~l~ 169 (859)
T PF01576_consen 98 -KKREAELAKLRRDLEE----ANLQ---HEATLAELRKKHQDAVAELNEQLEQLQKQKAKLEKEKSQLEAELDDLQAQLD 169 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -HHHHHHHHHHHHHHHH----HHHH---HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3333444444444321 1011 22222344555555555555444444444444444444444321111 1112
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhHHHHHHHHhhHHHHHHHHHHHHH
Q 002676 212 QLSKIDDMMKEEAKNLHEVMEIIHLKHKEYADQIENYISSHSVDQAEIQHLAGELEETMAELEESRR 278 (894)
Q Consensus 212 ~l~~~~~~l~~e~~~l~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~e~~~l~~~l~~~~~el~~~~~ 278 (894)
.+.............+...+..+..++......+..+......+..++..|...+++....+..+..
T Consensus 170 ~~~k~k~~~Ek~~K~lE~qL~El~~klee~er~~~el~~~k~kL~~E~~eL~~qLee~e~~~~~l~r 236 (859)
T PF01576_consen 170 SLQKAKQEAEKKRKQLEAQLNELQAKLEESERQRNELTEQKAKLQSENSELTRQLEEAESQLSQLQR 236 (859)
T ss_dssp -------------------------------------------------------------------
T ss_pred HHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444445555555555655555555555555555555555555555555555444444433
No 16
>PRK02224 chromosome segregation protein; Provisional
Probab=99.66 E-value=1.1e-08 Score=125.05 Aligned_cols=45 Identities=29% Similarity=0.431 Sum_probs=21.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002676 320 LQELKDSVEEAKILAADRLSEVEEAQQDNINLSKQLENLQNELND 364 (894)
Q Consensus 320 ~~~le~~l~~~~~~~~~~~~el~~l~~~~~~l~~~~~~l~~~l~~ 364 (894)
+..+...+..+...+......+..+...+..+...+..+...+..
T Consensus 253 l~~l~~~~~~l~~~i~~~e~~~~~l~~~i~~~~~~~~~le~e~~~ 297 (880)
T PRK02224 253 LETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDD 297 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444445555555555544444444444444444444333
No 17
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=99.60 E-value=6.6e-08 Score=110.34 Aligned_cols=57 Identities=16% Similarity=0.202 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHH
Q 002676 224 AKNLHEVMEIIHLKHKEYADQIENYISSHSVDQAEIQHLAGELEETMAELEESRRKL 280 (894)
Q Consensus 224 ~~~l~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~e~~~l~~~l~~~~~el~~~~~~l 280 (894)
+......+..++.++..+..++..++..+..++..+..++..++....++..+...+
T Consensus 109 ld~~~~q~~rl~~E~er~~~El~~lr~~lE~~q~~~e~~q~~l~~~~eei~kL~e~L 165 (775)
T PF10174_consen 109 LDKAQEQFERLQAERERLQRELERLRKTLEELQLRIETQQQTLDKADEEIEKLQEML 165 (775)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555566666666666666666666666667777777777777666666666554
No 18
>PRK03918 chromosome segregation protein; Provisional
Probab=99.59 E-value=1.4e-07 Score=115.91 Aligned_cols=14 Identities=7% Similarity=-0.372 Sum_probs=8.5
Q ss_pred CccCcCCCCCCCCc
Q 002676 876 KCPGCGTAFGQSDV 889 (894)
Q Consensus 876 ~CP~C~~~~~~~d~ 889 (894)
.+.+...||+.-|+
T Consensus 814 ~~lilDEp~~~lD~ 827 (880)
T PRK03918 814 PLLILDEPTPFLDE 827 (880)
T ss_pred CeEEEeCCCcccCH
Confidence 34456677776664
No 19
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=2.7e-15 Score=132.08 Aligned_cols=55 Identities=35% Similarity=0.794 Sum_probs=50.6
Q ss_pred cccccccccccCC--cccccCCCcccHhHHhHhhccCCCCccCcCCCCCCCCcccccC
Q 002676 839 ILKCGVCFDRPKE--VVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDVRFVKI 894 (894)
Q Consensus 839 ~l~C~iC~~~~~~--~v~~~CgH~fC~~C~~~~~~~~~~~CP~C~~~~~~~d~~~~~~ 894 (894)
.+.||||++.+.. +|.++|||+||..||+..++ ..++||+||+.+...++++|||
T Consensus 131 ~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk-~~~~CP~C~kkIt~k~~~rI~L 187 (187)
T KOG0320|consen 131 TYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALK-NTNKCPTCRKKITHKQFHRIYL 187 (187)
T ss_pred ccCCCceecchhhccccccccchhHHHHHHHHHHH-hCCCCCCcccccchhhheeccC
Confidence 4799999999865 67799999999999999999 5889999999999999999997
No 20
>PRK03918 chromosome segregation protein; Provisional
Probab=99.50 E-value=1.2e-06 Score=107.81 Aligned_cols=13 Identities=8% Similarity=0.450 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHHH
Q 002676 533 IKSLKALIEKLQK 545 (894)
Q Consensus 533 l~~l~~~~~~l~~ 545 (894)
+..+...+..+..
T Consensus 461 i~~l~~~~~~l~~ 473 (880)
T PRK03918 461 LKRIEKELKEIEE 473 (880)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 21
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=99.49 E-value=5.6e-07 Score=102.64 Aligned_cols=52 Identities=25% Similarity=0.442 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002676 760 DAEKELKWLKSAVTSSDKEYEQIQRKTEDMRKELENERNERKKLEEELMEVN 811 (894)
Q Consensus 760 ~l~~~l~~~~~~~~~~~~el~~~~~~l~e~~~~l~~~~~~~~~l~~~i~~l~ 811 (894)
.|...+..+......++.++.....-+.+....+......+..+.+.+..|+
T Consensus 960 ~L~e~~~~~~~k~~E~~~~~~e~~~~~~E~k~~~~~~k~~~e~i~k~~~~lk 1011 (1293)
T KOG0996|consen 960 DLTEELKGLEEKAAELEKEYKEAEESLKEIKKELRDLKSELENIKKSENELK 1011 (1293)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333333333333333333333
No 22
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=99.46 E-value=9.4e-07 Score=101.10 Aligned_cols=74 Identities=11% Similarity=0.069 Sum_probs=37.3
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHhccChh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 002676 168 LASRHSSARELMKFIEEVIDAQRVKTKSIAEAFHEKLSAE---DAIIQLSKIDDMMKEEAKNLHEVMEIIHLKHKEY 241 (894)
Q Consensus 168 l~~r~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~---~~~~~l~~~~~~l~~e~~~l~~~l~~l~~~~~~~ 241 (894)
|......+...+..+...++.....+..+...+.....+. ...........+....+..++..+......+..+
T Consensus 133 lr~~lE~~q~~~e~~q~~l~~~~eei~kL~e~L~~~g~~~~~~~~~~~~~~~~~~~e~~~~~le~lle~~e~~~~~~ 209 (775)
T PF10174_consen 133 LRKTLEELQLRIETQQQTLDKADEEIEKLQEMLQSKGLSAEAEEEDNEALRRIREAEARIMRLESLLERKEKEHMEA 209 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 4455556666666666666666666666666664331111 1111222344445555555555555555555433
No 23
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=99.41 E-value=3.1e-14 Score=167.66 Aligned_cols=68 Identities=12% Similarity=0.138 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHH
Q 002676 213 LSKIDDMMKEEAKNLHEVMEIIHLKHKEYADQIENYISSHSVDQAEIQHLAGELEETMAELEESRRKL 280 (894)
Q Consensus 213 l~~~~~~l~~e~~~l~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~e~~~l~~~l~~~~~el~~~~~~l 280 (894)
+++....+..++..+...+..+......+......+...+..+...+......+.++......+...+
T Consensus 150 lEK~k~~l~~e~~dL~~~l~~~~k~k~~~Ek~~K~lE~qL~El~~klee~er~~~el~~~k~kL~~E~ 217 (859)
T PF01576_consen 150 LEKEKSQLEAELDDLQAQLDSLQKAKQEAEKKRKQLEAQLNELQAKLEESERQRNELTEQKAKLQSEN 217 (859)
T ss_dssp --------------------------------------------------------------------
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444444444444444444444443333333333333333333
No 24
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.35 E-value=3.9e-13 Score=123.22 Aligned_cols=57 Identities=30% Similarity=0.705 Sum_probs=50.6
Q ss_pred cccccccccccccCCcccccCCCcccHhHHhHhhcc---------------CCCCccCcCCCCCCCCccccc
Q 002676 837 KAILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEI---------------RHRKCPGCGTAFGQSDVRFVK 893 (894)
Q Consensus 837 ~~~l~C~iC~~~~~~~v~~~CgH~fC~~C~~~~~~~---------------~~~~CP~C~~~~~~~d~~~~~ 893 (894)
...+.|+||++.+++||+++|||+||..|+..|+.. ....||.|+.++...++.+||
T Consensus 16 ~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiy 87 (193)
T PLN03208 16 GGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIY 87 (193)
T ss_pred CCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEee
Confidence 345899999999999999999999999999999742 234799999999999999998
No 25
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=6.4e-06 Score=91.48 Aligned_cols=142 Identities=13% Similarity=0.137 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhhcC
Q 002676 213 LSKIDDMMKEEAKNLHEVMEIIHLKHKEYADQIENYISSHSVDQAEIQHLAGELEETMAELEESRRKLVSLKMQKDIASG 292 (894)
Q Consensus 213 l~~~~~~l~~e~~~l~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~e~~~l~~~l~~~~~el~~~~~~l~~~~~~~~~~~~ 292 (894)
|...+..+...+..+......+...+..+...+.........+...++.+..+++.+......+...++.+...... .|
T Consensus 53 L~~e~e~Lq~~~~~~~~~~~~~~~~~~el~~k~s~~~~~~~e~~~~le~~~~d~eki~~~~~~l~~~la~~~~~~~t-~~ 131 (698)
T KOG0978|consen 53 LAEENEKLQNLADHLQEKHATLSEQISELLDKISTAETEVDELEQQLEDLQADLEKIRRRSNKLNKHLAEALEHLNT-YG 131 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC-CC
Confidence 44455556666667777777777777777777777777777778888888888988888888888777777322221 11
Q ss_pred CcccccccccccCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002676 293 THSLVPAAAMVNGSVSPEKRPADGRMDLQELKDSVEEAKILAADRLSEVEEAQQDNINLSKQLENLQ 359 (894)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~~~el~~l~~~~~~l~~~~~~l~ 359 (894)
. . .+..++.+++.... .......++++...-......+..+......+...+......+..+.
T Consensus 132 ~-~--~~~~~~~~t~~~t~-~~~l~~~iee~~~~~~~~~~ele~lq~~~~~~~~~~~~~~~~l~~~~ 194 (698)
T KOG0978|consen 132 N-G--NGSLSGTITVNSTE-LEELRDEIEELRELASTRMEELEKLQLYSDEILRQLDRFRVELRSLK 194 (698)
T ss_pred C-c--ccccCcccccchhh-hhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 1 1 11122223333333 44444455554433333444444444444444444444444443333
No 26
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=99.29 E-value=8.2e-06 Score=91.76 Aligned_cols=94 Identities=14% Similarity=0.146 Sum_probs=42.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhhhhhHhhhch--hHHHHHHHHHHHHHHHH
Q 002676 319 DLQELKDSVEEAKILAADRLSEVEEAQQDNINLSKQ-------LENLQNELNDDKYVHSSR--LYNLVNDQLQHWNVEVE 389 (894)
Q Consensus 319 ~~~~le~~l~~~~~~~~~~~~el~~l~~~~~~l~~~-------~~~l~~~l~~~~~~~~~~--~~~~l~~~l~~l~~el~ 389 (894)
.++.+...+.+....+......+.........+.+. +...+..+..+..-.+.. .-..+..++...+..+.
T Consensus 330 k~e~i~~~i~e~~~~l~~k~~~~~~~~~~~~~~ke~~~~~s~~~e~~e~~~eslt~G~Ss~~~~e~~l~~ql~~aK~~~~ 409 (1174)
T KOG0933|consen 330 KLEEIRKNIEEDRKKLKEKEKAMAKVEEGYEKLKEAFQEDSKLLEKAEELVESLTAGLSSNEDEEKTLEDQLRDAKITLS 409 (1174)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccchhhHHHHHHHHHHHHH
Confidence 345555555555555555555554433333333333 333333332221111111 12445666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 002676 390 RYKALTDSLLIDRSLVLRREKEI 412 (894)
Q Consensus 390 ~~~~~~~~l~~e~~~l~~~~~~~ 412 (894)
.+...+....-....+..++...
T Consensus 410 ~~~t~~k~a~~k~e~~~~elk~~ 432 (1174)
T KOG0933|consen 410 EASTEIKQAKLKLEHLRKELKLR 432 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 65555555555555555444443
No 27
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=99.26 E-value=2.6e-12 Score=88.09 Aligned_cols=39 Identities=36% Similarity=0.869 Sum_probs=32.4
Q ss_pred ccccccccCCcccccCCCcccHhHHhHhhccCCC---CccCc
Q 002676 842 CGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHR---KCPGC 880 (894)
Q Consensus 842 C~iC~~~~~~~v~~~CgH~fC~~C~~~~~~~~~~---~CP~C 880 (894)
||||.+.|++||+++|||+||..|+..++..... .||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 8999999999999999999999999999986544 59998
No 28
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=99.25 E-value=1.3e-05 Score=90.19 Aligned_cols=47 Identities=19% Similarity=0.261 Sum_probs=30.6
Q ss_pred HHHHHHhhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhh
Q 002676 243 DQIENYISSHSVDQAEIQHLAGELEETMAELEESRRKLVSLKMQKDI 289 (894)
Q Consensus 243 ~~l~~~~~~~~~~~~e~~~l~~~l~~~~~el~~~~~~l~~~~~~~~~ 289 (894)
.........+......+..+...+.....++..++..+..+...++.
T Consensus 244 ~~~~~~~~~i~e~~~~i~~l~e~~~k~~~ei~~le~~ikei~~~rd~ 290 (1174)
T KOG0933|consen 244 EKRKNSAHEIEEMKDKIAKLDESLGKTDKEIESLEKEIKEIEQQRDA 290 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555666667777777777777777777777777555544
No 29
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=99.25 E-value=3.6e-12 Score=98.80 Aligned_cols=53 Identities=19% Similarity=0.221 Sum_probs=49.3
Q ss_pred ccccccccccCCcccccCCCcccHhHHhHhhccCCCCccCcCCCCCCCCccccc
Q 002676 840 LKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDVRFVK 893 (894)
Q Consensus 840 l~C~iC~~~~~~~v~~~CgH~fC~~C~~~~~~~~~~~CP~C~~~~~~~d~~~~~ 893 (894)
+.||||++.+.+||+++|||+||..|+..|+.. ...||.||.+|+..|+.+++
T Consensus 2 ~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~-~~~cP~~~~~~~~~~l~~~~ 54 (63)
T smart00504 2 FLCPISLEVMKDPVILPSGQTYERRAIEKWLLS-HGTDPVTGQPLTHEDLIPNL 54 (63)
T ss_pred cCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHH-CCCCCCCcCCCChhhceeCH
Confidence 689999999999999999999999999999985 67899999999999988764
No 30
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=99.24 E-value=9.8e-13 Score=127.14 Aligned_cols=58 Identities=36% Similarity=0.822 Sum_probs=52.5
Q ss_pred ccccccccccccccCCcccccCCCcccHhHHhHhhccCCCCccCcCCCCCCCCcccccC
Q 002676 836 CKAILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDVRFVKI 894 (894)
Q Consensus 836 l~~~l~C~iC~~~~~~~v~~~CgH~fC~~C~~~~~~~~~~~CP~C~~~~~~~d~~~~~~ 894 (894)
+...++|.||++-|+-|+++||||+||.-||.+++. .+..||.|+.+|...|++.++|
T Consensus 20 lD~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~-~~p~CP~C~~~~~Es~Lr~n~i 77 (442)
T KOG0287|consen 20 LDDLLRCGICFEYFNIPMITPCSHTFCSLCIRKFLS-YKPQCPTCCVTVTESDLRNNRI 77 (442)
T ss_pred hHHHHHHhHHHHHhcCceeccccchHHHHHHHHHhc-cCCCCCceecccchhhhhhhhH
Confidence 344589999999999999999999999999999998 5788999999999999988764
No 31
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=99.22 E-value=1.5e-05 Score=91.06 Aligned_cols=256 Identities=13% Similarity=0.130 Sum_probs=132.6
Q ss_pred HHHHHHHhhhhhHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHchhcchhhHHH
Q 002676 355 LENLQNELNDDKYVHSSRLYNLVNDQLQHWNVEVERYKALTDSLLIDRSLVLRREKEINVRAESADAARNTVDDSESRIE 434 (894)
Q Consensus 355 ~~~l~~~l~~~~~~~~~~~~~~l~~~l~~l~~el~~~~~~~~~l~~e~~~l~~~~~~~~~~~e~~~~~~~~~~~~~~~~~ 434 (894)
+..+...|.+.+.....-.+......+..+...+..+...+..+...++.+...-..- +..+.
T Consensus 81 ~~~ie~~l~~ae~~~~~~~f~~a~~~~~~~~~~l~~~e~~~~~i~~~l~~l~~~e~~n-----------------r~~v~ 143 (569)
T PRK04778 81 LPDIEEQLFEAEELNDKFRFRKAKHEINEIESLLDLIEEDIEQILEELQELLESEEKN-----------------REEVE 143 (569)
T ss_pred hhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHH
Confidence 3333333433333333444555555566666666666666555555555444432221 44455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhhHhh
Q 002676 435 RLEVQLQKSIIEKNDLGLKMEEAIQDSGRKDIKAEFRVMASALSKEMGMMEAQLN--RWKETADEALSLREKAVSLKVSL 512 (894)
Q Consensus 435 ~l~~~l~~~~~el~~l~~~~~~~~~~~~~~~~~~el~~~~~~l~~~~~~l~~~~~--~~~~~~~~l~~l~~~~~~l~~~l 512 (894)
.+......++..+-.-+ ... +.....++.....++........... .+..|..-+..++..+..+...+
T Consensus 144 ~l~~~y~~~rk~ll~~~-------~~~--G~a~~~le~~l~~~e~~f~~f~~l~~~Gd~~~A~e~l~~l~~~~~~l~~~~ 214 (569)
T PRK04778 144 QLKDLYRELRKSLLANR-------FSF--GPALDELEKQLENLEEEFSQFVELTESGDYVEAREILDQLEEELAALEQIM 214 (569)
T ss_pred HHHHHHHHHHHHHHhcC-------ccc--cchHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555444433 223 36666677777777766666655443 45566666777777766666444
Q ss_pred hhhhHHhHHhhhhhHH-HHHHHHHHHHHHHHHHHhHHHHHHHHHHhccCCCCcccHHHHHHHHHHHHHHHHHHHHhhhhh
Q 002676 513 SAKTNEQKRLTDKCVE-QMAEIKSLKALIEKLQKDKLESQIMLDMYGQEGRDPRDLMEIKESERRAHSQAEVLKNALDEH 591 (894)
Q Consensus 513 ~~~~~e~~~l~~~~~~-~~~~l~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~l~~~l~~~ 591 (894)
+.+ +.+-..+.. +-.++..|..-+..+... ++..+.- .+...+..+..++......++..
T Consensus 215 ~~i----P~l~~~~~~~~P~ql~el~~gy~~m~~~------------gy~~~~~---~i~~~i~~l~~~i~~~~~~l~~l 275 (569)
T PRK04778 215 EEI----PELLKELQTELPDQLQELKAGYRELVEE------------GYHLDHL---DIEKEIQDLKEQIDENLALLEEL 275 (569)
T ss_pred HHH----HHHHHHHHHHhhHHHHHHHHHHHHHHHc------------CCCCCCC---ChHHHHHHHHHHHHHHHHHHHhc
Confidence 433 333333322 224455555555544432 3332211 13333344444444433333322
Q ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 002676 592 SLELRVKAANEAEAACQQRLSAAEAEIIELVAKLDASERDVMELEEAMKSKDREAEAYIAEMETIGQA 659 (894)
Q Consensus 592 ~~e~~~~~~~~~~~~l~~~i~~le~el~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~ 659 (894)
.++........+..+|..+-..+..-.............+...+.........+..++..+...
T Consensus 276 ----~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~s 339 (569)
T PRK04778 276 ----DLDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQS 339 (569)
T ss_pred ----ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 2455555555666666666666655555555566666666666666666666666666666655
No 32
>PRK01156 chromosome segregation protein; Provisional
Probab=99.22 E-value=4.3e-05 Score=93.77 Aligned_cols=35 Identities=17% Similarity=0.191 Sum_probs=16.7
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 002676 521 RLTDKCVEQMAEIKSLKALIEKLQKDKLESQIMLD 555 (894)
Q Consensus 521 ~l~~~~~~~~~~l~~l~~~~~~l~~~~~~l~~~~~ 555 (894)
.+...+..+...+..+...+..+...+..+....+
T Consensus 413 e~~~~~~~l~~~i~~l~~~i~~l~~~~~el~~~~~ 447 (895)
T PRK01156 413 EINVKLQDISSKVSSLNQRIRALRENLDELSRNME 447 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444555555555555555555554443
No 33
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=99.21 E-value=2.4e-05 Score=89.84 Aligned_cols=22 Identities=9% Similarity=0.305 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHhhhhhhhhh
Q 002676 801 KKLEEELMEVNNKVAELTSETG 822 (894)
Q Consensus 801 ~~l~~~i~~l~~~i~~l~~~~~ 822 (894)
..+..++..|+..+........
T Consensus 867 ~eik~ei~rlk~~i~~~ee~~~ 888 (1074)
T KOG0250|consen 867 AEIKREIKRLKRQIQMCEESLG 888 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc
Confidence 4455555556655555554443
No 34
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.21 E-value=5.9e-12 Score=131.20 Aligned_cols=62 Identities=32% Similarity=0.593 Sum_probs=54.3
Q ss_pred HHhcccccccccccccccCCcccccCCCcccHhHHhHhhccCCCCccCcCCCCCCCCcccccC
Q 002676 832 EIKDCKAILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDVRFVKI 894 (894)
Q Consensus 832 e~~~l~~~l~C~iC~~~~~~~v~~~CgH~fC~~C~~~~~~~~~~~CP~C~~~~~~~d~~~~~~ 894 (894)
.+..+...+.|+||++.|.+||+++|||+||..|+..++.. ...||.|+.+|+..+++++|+
T Consensus 19 ~l~~Le~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~-~~~CP~Cr~~~~~~~Lr~N~~ 80 (397)
T TIGR00599 19 SLYPLDTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSN-QPKCPLCRAEDQESKLRSNWL 80 (397)
T ss_pred cccccccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhC-CCCCCCCCCccccccCccchH
Confidence 34566777999999999999999999999999999999984 568999999999888887763
No 35
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=7e-12 Score=120.35 Aligned_cols=55 Identities=31% Similarity=0.665 Sum_probs=48.9
Q ss_pred ccccccccccccCCcccccCCCcccHhHHhHhhccCCCCccCcCCCCCCCCccccc
Q 002676 838 AILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDVRFVK 893 (894)
Q Consensus 838 ~~l~C~iC~~~~~~~v~~~CgH~fC~~C~~~~~~~~~~~CP~C~~~~~~~d~~~~~ 893 (894)
....|.+|+++..+|..|||||+||-+||..|...+ ..||.||..|.+++|.-++
T Consensus 238 a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~ek-~eCPlCR~~~~pskvi~Lr 292 (293)
T KOG0317|consen 238 ATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSEK-AECPLCREKFQPSKVICLR 292 (293)
T ss_pred CCCceEEEecCCCCCCcCcCcchHHHHHHHHHHccc-cCCCcccccCCCcceeeec
Confidence 447999999999999999999999999999998864 3499999999999876554
No 36
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=6.3e-12 Score=130.51 Aligned_cols=56 Identities=32% Similarity=0.708 Sum_probs=52.2
Q ss_pred cccccccccccCCcccccCCCcccHhHHhHhhccC----CCCccCcCCCCCCCCcccccC
Q 002676 839 ILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIR----HRKCPGCGTAFGQSDVRFVKI 894 (894)
Q Consensus 839 ~l~C~iC~~~~~~~v~~~CgH~fC~~C~~~~~~~~----~~~CP~C~~~~~~~d~~~~~~ 894 (894)
.+.||||+..+.-|+.|.|||+||..||-.+|.+. +++||+|+..|+..||++|||
T Consensus 186 ~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~~ 245 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVFI 245 (513)
T ss_pred CCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccceeeeee
Confidence 68999999999999999999999999999998864 567999999999999999986
No 37
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=7.4e-12 Score=116.64 Aligned_cols=57 Identities=33% Similarity=0.748 Sum_probs=52.1
Q ss_pred cccccccccccccCCcccccCCCcccHhHHhHhhccCCC--CccCcCCCCCCCCccccc
Q 002676 837 KAILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHR--KCPGCGTAFGQSDVRFVK 893 (894)
Q Consensus 837 ~~~l~C~iC~~~~~~~v~~~CgH~fC~~C~~~~~~~~~~--~CP~C~~~~~~~d~~~~~ 893 (894)
...+.|.||++.-++||+|.|||+||-.|+..|+.++.. .||+|...++...|.|||
T Consensus 45 ~~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlY 103 (230)
T KOG0823|consen 45 GGFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLY 103 (230)
T ss_pred CCceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEEeee
Confidence 355899999999999999999999999999999997544 389999999999999998
No 38
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=99.17 E-value=1.1e-11 Score=84.51 Aligned_cols=38 Identities=45% Similarity=1.096 Sum_probs=33.8
Q ss_pred ccccccccCCc-ccccCCCcccHhHHhHhhccCCCCccCc
Q 002676 842 CGVCFDRPKEV-VITKCFHLFCNPCIQRNLEIRHRKCPGC 880 (894)
Q Consensus 842 C~iC~~~~~~~-v~~~CgH~fC~~C~~~~~~~~~~~CP~C 880 (894)
|+||++.+.+| ++++|||+||..|+..++.. ..+||+|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~-~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEK-NPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHC-TSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHC-cCCCcCC
Confidence 89999999999 68999999999999999997 7899998
No 39
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=99.16 E-value=7.3e-12 Score=118.42 Aligned_cols=56 Identities=32% Similarity=0.598 Sum_probs=48.8
Q ss_pred cccccccccccccccCCcccccCCCcccHhHHhHhhccCCCCccCcCCCCCCCCccc
Q 002676 835 DCKAILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDVRF 891 (894)
Q Consensus 835 ~l~~~l~C~iC~~~~~~~v~~~CgH~fC~~C~~~~~~~~~~~CP~C~~~~~~~d~~~ 891 (894)
.+..++.|-||...|+-|++|+|||+||+-||.+++. .+..||.|+.+|...-++.
T Consensus 21 ~LDs~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~-~qp~CP~Cr~~~~esrlr~ 76 (391)
T COG5432 21 GLDSMLRCRICDCRISIPCETTCGHTFCSLCIRRHLG-TQPFCPVCREDPCESRLRG 76 (391)
T ss_pred cchhHHHhhhhhheeecceecccccchhHHHHHHHhc-CCCCCccccccHHhhhccc
Confidence 3455689999999999999999999999999999999 4788999999987655443
No 40
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=99.16 E-value=2.5e-05 Score=85.16 Aligned_cols=26 Identities=15% Similarity=0.207 Sum_probs=21.8
Q ss_pred CcccHhHHhHhhccCCCCccCcCCCC
Q 002676 859 HLFCNPCIQRNLEIRHRKCPGCGTAF 884 (894)
Q Consensus 859 H~fC~~C~~~~~~~~~~~CP~C~~~~ 884 (894)
|--|..|+...+.+.+.+-|.||.+-
T Consensus 633 ~~elvtyL~sqi~~kqtkqpklgrrs 658 (1265)
T KOG0976|consen 633 HPELVTYLPSQIDAKQTKQPKLGRRS 658 (1265)
T ss_pred cHHHHhhchhhhchhcccCCccCChH
Confidence 66788899888888888999999763
No 41
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=99.14 E-value=1.4e-11 Score=89.13 Aligned_cols=54 Identities=35% Similarity=0.797 Sum_probs=30.3
Q ss_pred ccccccccccccccCCccc-ccCCCcccHhHHhHhhccCCCCccCcCCCCCCCCcccc
Q 002676 836 CKAILKCGVCFDRPKEVVI-TKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDVRFV 892 (894)
Q Consensus 836 l~~~l~C~iC~~~~~~~v~-~~CgH~fC~~C~~~~~~~~~~~CP~C~~~~~~~d~~~~ 892 (894)
+...+.|++|+..++.||. ..|.|+||..|+...+.+ .||+|+.|.-..|++-+
T Consensus 4 le~lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~~---~CPvC~~Paw~qD~~~N 58 (65)
T PF14835_consen 4 LEELLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIGS---ECPVCHTPAWIQDIQIN 58 (65)
T ss_dssp HHHTTS-SSS-S--SS-B---SSS--B-TTTGGGGTTT---B-SSS--B-S-SS----
T ss_pred HHHhcCCcHHHHHhcCCceeccCccHHHHHHhHHhcCC---CCCCcCChHHHHHHHhh
Confidence 4456899999999999985 599999999999988764 49999999999998754
No 42
>PRK04863 mukB cell division protein MukB; Provisional
Probab=99.11 E-value=0.00015 Score=90.29 Aligned_cols=39 Identities=21% Similarity=0.297 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002676 470 FRVMASALSKEMGMMEAQLNRWKETADEALSLREKAVSL 508 (894)
Q Consensus 470 l~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~l~~~~~~l 508 (894)
+......+...+..+....-.|-.+...+..|+......
T Consensus 584 ~r~~~~qL~~~i~~l~~~ap~W~~a~~al~~L~eq~g~~ 622 (1486)
T PRK04863 584 LRQQLEQLQARIQRLAARAPAWLAAQDALARLREQSGEE 622 (1486)
T ss_pred HHHHHHHHHHHHHHHHHhChHHHhhHHHHHHHHHhcchh
Confidence 344444444455555555556666777777766655533
No 43
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=99.10 E-value=4e-11 Score=87.10 Aligned_cols=45 Identities=42% Similarity=1.072 Sum_probs=40.3
Q ss_pred ccccccccccCCcccccCCCc-ccHhHHhHhhccCCCCccCcCCCCC
Q 002676 840 LKCGVCFDRPKEVVITKCFHL-FCNPCIQRNLEIRHRKCPGCGTAFG 885 (894)
Q Consensus 840 l~C~iC~~~~~~~v~~~CgH~-fC~~C~~~~~~~~~~~CP~C~~~~~ 885 (894)
..|+||++.+.+++++||||+ ||..|+..++. +..+||+||.++.
T Consensus 3 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~-~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 3 EECPICFENPRDVVLLPCGHLCFCEECAERLLK-RKKKCPICRQPIE 48 (50)
T ss_dssp SB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHH-TTSBBTTTTBB-S
T ss_pred CCCccCCccCCceEEeCCCChHHHHHHhHHhcc-cCCCCCcCChhhc
Confidence 679999999999999999999 99999999998 6788999999985
No 44
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=99.06 E-value=5.3e-11 Score=94.03 Aligned_cols=55 Identities=20% Similarity=0.185 Sum_probs=45.9
Q ss_pred cccccccccccCCcccccCCCcccHhHHhHhhccCCCCccCcCCCCCCCCccccc
Q 002676 839 ILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDVRFVK 893 (894)
Q Consensus 839 ~l~C~iC~~~~~~~v~~~CgH~fC~~C~~~~~~~~~~~CP~C~~~~~~~d~~~~~ 893 (894)
.+.||||+..+.+||+++|||+||..||..|+..+...||+|+.++...++.+++
T Consensus 4 ~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~pn~ 58 (73)
T PF04564_consen 4 EFLCPITGELMRDPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESDLIPNR 58 (73)
T ss_dssp GGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSEE-H
T ss_pred ccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccceECH
Confidence 4899999999999999999999999999999997788999999999999888764
No 45
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=99.06 E-value=0.00014 Score=85.95 Aligned_cols=299 Identities=15% Similarity=0.163 Sum_probs=149.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh-hhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH---HHHhHHH
Q 002676 569 EIKESERRAHSQAEVLKNALDE-HSLELRVKAANEAEAACQQRLSAAEAEIIELVAKLDASERDVMELEE---AMKSKDR 644 (894)
Q Consensus 569 ~l~~~~~~~~~~~~~l~~~l~~-~~~e~~~~~~~~~~~~l~~~i~~le~el~~l~~~~~~~~~~~~~l~~---~l~~~~~ 644 (894)
.+..+......+++.+...+.. ...-..+.....+..........+..++..++.........+..+.. .......
T Consensus 792 ~~~~d~~~~~k~ie~~~s~l~~~~d~i~t~~E~~~Ek~~~~~~~~~~rke~E~~~k~~~~~~~~i~~l~~~~~e~k~~~~ 871 (1294)
T KOG0962|consen 792 RFLKDLKLREKEIEELVSELDSSVDGIRTVDELRKEKSKKQESLDKLRKEIECLQKEVIEQEREISRLINLRNELKEEKQ 871 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555655555544 22223466777777777777888888888888777777766666554 3333344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH---HHH-HHHHHHHHHHHHH
Q 002676 645 EAEAYIAEMETIGQAFEDMQTQNQHLLQQVAERDDLNIKLVSESVKTKQVQSFLLSEKQA---LAR-QLQQINALVESAK 720 (894)
Q Consensus 645 ~~~~l~~e~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~e~~~~~~~~~~l~~e~~~---l~~-~l~~l~~~~~~~~ 720 (894)
.+......+..+...+.++.+.+..+...+.++...+..+...+..+...+..+..+... +.+ .+..++.....+.
T Consensus 872 ~~~~~l~~~~qle~~~~~l~e~~~~~~s~~~e~~~~~~~~~~~l~e~~s~~e~~k~~~~~~~~~aqk~~~~ine~~s~l~ 951 (1294)
T KOG0962|consen 872 KIERSLARLQQLEEDIEELSEEITRLDSKVKELLERIQPLKVELEEAQSEKEELKNERNTSEKLAQKKRNDINEKVSLLH 951 (1294)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHhhhcchhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555566666666666666666666666666655555555555444444444222 111 1111111111111
Q ss_pred HHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002676 721 LRILHAEEQMKAC-----LTEALRYNSEDRHLAVNLETTKWELADAEKELKWL--KSAVTSSDKEYEQIQRKTEDMRKEL 793 (894)
Q Consensus 721 ~~~~~l~~~l~~~-----~~~~~~l~~e~~~~~~~~~~l~~~l~~l~~~l~~~--~~~~~~~~~el~~~~~~l~e~~~~l 793 (894)
............. .+++..+...+......+......+......-..+ ...+..+..++..+...+..+..++
T Consensus 952 ~~~~~~~~~~~~~~~~~~~~~l~~~~e~l~~~~~~~~~~~~~l~~~~~~er~l~dnl~~~~l~~q~~e~~re~~~ld~Qi 1031 (1294)
T KOG0962|consen 952 QIYKLNECFEQYGFDDLRIAQLSESEEHLEERDNEVNEIKQKIRNQYQRERNLKDNLTLRNLERKLKELERELSELDKQI 1031 (1294)
T ss_pred HHHHhHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1100000000000 11222222222222222322222222211111111 1112234444444444444433333
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhh--HHHHHHHHHHhcccccccccccccc---cCC------cccccCCCcc-
Q 002676 794 ENERNERKKLEEELMEVNNKVAELTSETGE--AAIQKLQDEIKDCKAILKCGVCFDR---PKE------VVITKCFHLF- 861 (894)
Q Consensus 794 ~~~~~~~~~l~~~i~~l~~~i~~l~~~~~~--~~~~~L~ee~~~l~~~l~C~iC~~~---~~~------~v~~~CgH~f- 861 (894)
... .+....++...|......++....+ |.+..+..++..++..+.=+-|.+. |.. ++-+.|-|+-
T Consensus 1032 ~~~--~~~~~~ee~~~L~~~~~~l~se~~~~lg~~ke~e~~i~~~k~eL~~~~~kd~~~nyr~~~ie~~tt~~~~~DL~k 1109 (1294)
T KOG0962|consen 1032 LEA--DIKSVKEERVKLEEEREKLSSEKNLLLGEMKQYESQIKKLKQELREKDFKDAEKNYRKALIELKTTELSNKDLDK 1109 (1294)
T ss_pred HHh--HHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 2455667777788888888887777 8888888888888887776666643 222 2223466654
Q ss_pred cHhHHhHh
Q 002676 862 CNPCIQRN 869 (894)
Q Consensus 862 C~~C~~~~ 869 (894)
|+.|++..
T Consensus 1110 y~~aLD~A 1117 (1294)
T KOG0962|consen 1110 YYKALDKA 1117 (1294)
T ss_pred HHHHHHHH
Confidence 56665543
No 46
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.02 E-value=0.00012 Score=82.28 Aligned_cols=48 Identities=21% Similarity=0.222 Sum_probs=18.8
Q ss_pred HHHHhhhHhhhhhhHHhHHhhhhhHHHHHHHHHHHHHHHHHHHhHHHH
Q 002676 503 EKAVSLKVSLSAKTNEQKRLTDKCVEQMAEIKSLKALIEKLQKDKLES 550 (894)
Q Consensus 503 ~~~~~l~~~l~~~~~e~~~l~~~~~~~~~~l~~l~~~~~~l~~~~~~l 550 (894)
.++..+.+.+...-.++..+...+.+...++..+.+.+-.+..++.++
T Consensus 418 ~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del 465 (1200)
T KOG0964|consen 418 KEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDEL 465 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333344444444433344444433333333333333
No 47
>PHA02926 zinc finger-like protein; Provisional
Probab=99.00 E-value=2.1e-10 Score=105.65 Aligned_cols=57 Identities=26% Similarity=0.623 Sum_probs=43.0
Q ss_pred cccccccccccccCC---------cccccCCCcccHhHHhHhhccC-----CCCccCcCCCCCCCCccccc
Q 002676 837 KAILKCGVCFDRPKE---------VVITKCFHLFCNPCIQRNLEIR-----HRKCPGCGTAFGQSDVRFVK 893 (894)
Q Consensus 837 ~~~l~C~iC~~~~~~---------~v~~~CgH~fC~~C~~~~~~~~-----~~~CP~C~~~~~~~d~~~~~ 893 (894)
.....|+||++...+ .++.+|||+||..|+..|..++ .+.||.||..|..=-..++|
T Consensus 168 SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I~pSrf~ 238 (242)
T PHA02926 168 SKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRNITMSKFY 238 (242)
T ss_pred cCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeeeeccccce
Confidence 345899999986421 4677999999999999998754 34599999999854444443
No 48
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.99 E-value=9.7e-11 Score=82.49 Aligned_cols=40 Identities=33% Similarity=0.810 Sum_probs=34.3
Q ss_pred cccccccccC---CcccccCCCcccHhHHhHhhccCCCCccCcC
Q 002676 841 KCGVCFDRPK---EVVITKCFHLFCNPCIQRNLEIRHRKCPGCG 881 (894)
Q Consensus 841 ~C~iC~~~~~---~~v~~~CgH~fC~~C~~~~~~~~~~~CP~C~ 881 (894)
.|+||++.+. .++.++|||+||..|+..|+.. ...||+||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~-~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKR-NNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHH-SSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHh-CCcCCccC
Confidence 5999999883 4778899999999999999995 57999996
No 49
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.98 E-value=2.5e-10 Score=110.60 Aligned_cols=48 Identities=27% Similarity=0.738 Sum_probs=40.7
Q ss_pred ccccccccccccCC--------cccccCCCcccHhHHhHhhccCCCCccCcCCCCCC
Q 002676 838 AILKCGVCFDRPKE--------VVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQ 886 (894)
Q Consensus 838 ~~l~C~iC~~~~~~--------~v~~~CgH~fC~~C~~~~~~~~~~~CP~C~~~~~~ 886 (894)
....|+||++.+.+ +++++|||+||..|+..|+. +...||+||.+|..
T Consensus 173 ~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~-~~~tCPlCR~~~~~ 228 (238)
T PHA02929 173 KDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKK-EKNTCPVCRTPFIS 228 (238)
T ss_pred CCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHh-cCCCCCCCCCEeeE
Confidence 45789999998654 35678999999999999988 56789999999974
No 50
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.98 E-value=2.7e-10 Score=79.83 Aligned_cols=41 Identities=32% Similarity=0.916 Sum_probs=35.7
Q ss_pred ccccccccc---CCcccccCCCcccHhHHhHhhccCCCCccCcCC
Q 002676 841 KCGVCFDRP---KEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGT 882 (894)
Q Consensus 841 ~C~iC~~~~---~~~v~~~CgH~fC~~C~~~~~~~~~~~CP~C~~ 882 (894)
.|++|+..| ..+++++|||+||..|+.... .....||+|++
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~-~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLK-GKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhc-CCCCCCcCCCC
Confidence 499999999 348899999999999999998 46778999985
No 51
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.97 E-value=2.6e-10 Score=79.18 Aligned_cols=39 Identities=36% Similarity=0.906 Sum_probs=36.2
Q ss_pred ccccccccCCcc-cccCCCcccHhHHhHhhc-cCCCCccCc
Q 002676 842 CGVCFDRPKEVV-ITKCFHLFCNPCIQRNLE-IRHRKCPGC 880 (894)
Q Consensus 842 C~iC~~~~~~~v-~~~CgH~fC~~C~~~~~~-~~~~~CP~C 880 (894)
|+||.+.+.+++ +++|||.||..|+..++. ....+||.|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999999998 999999999999999999 566789998
No 52
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=98.97 E-value=0.00053 Score=85.87 Aligned_cols=36 Identities=8% Similarity=0.168 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002676 327 VEEAKILAADRLSEVEEAQQDNINLSKQLENLQNEL 362 (894)
Q Consensus 327 l~~~~~~~~~~~~el~~l~~~~~~l~~~~~~l~~~l 362 (894)
+..+...+..+...+..+.....++..++..+...+
T Consensus 354 l~~~~~~~~~l~~~~~~Lt~~~~di~~ky~~~~~~l 389 (1201)
T PF12128_consen 354 LPEWRNELENLQEQLDLLTSKHQDIESKYNKLKQKL 389 (1201)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444455555555555555555555544443
No 53
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.95 E-value=2.1e-10 Score=78.25 Aligned_cols=36 Identities=31% Similarity=0.805 Sum_probs=23.1
Q ss_pred ccccccccCC----cccccCCCcccHhHHhHhhccC---CCCcc
Q 002676 842 CGVCFDRPKE----VVITKCFHLFCNPCIQRNLEIR---HRKCP 878 (894)
Q Consensus 842 C~iC~~~~~~----~v~~~CgH~fC~~C~~~~~~~~---~~~CP 878 (894)
||||.+ |.+ |++++|||+||..|++.++... ..+||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 999999 888 9999999999999999999853 45788
No 54
>PRK04863 mukB cell division protein MukB; Provisional
Probab=98.86 E-value=0.0011 Score=82.63 Aligned_cols=41 Identities=12% Similarity=0.088 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002676 321 QELKDSVEEAKILAADRLSEVEEAQQDNINLSKQLENLQNE 361 (894)
Q Consensus 321 ~~le~~l~~~~~~~~~~~~el~~l~~~~~~l~~~~~~l~~~ 361 (894)
+.+...+............++..++.++..+...+..+...
T Consensus 438 EeLe~~LenF~aklee~e~qL~elE~kL~~lea~leql~~~ 478 (1486)
T PRK04863 438 DNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQA 478 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444554555555555555555544444444444
No 55
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.84 E-value=1.4e-05 Score=80.24 Aligned_cols=203 Identities=17% Similarity=0.244 Sum_probs=127.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002676 607 CQQRLSAAEAEIIELVAKLDASERDVMELEEAMKSKDREAEAYIAEMETIGQAFEDMQTQNQHLLQQVAERDDLNIKLVS 686 (894)
Q Consensus 607 l~~~i~~le~el~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~ 686 (894)
.......++.++..|...+..++..+......+......+..+..........+..+..........+..++..+.....
T Consensus 27 ~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~lE~r~~~~eeri~~lE~~l~ea~~ 106 (237)
T PF00261_consen 27 AEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKVLENREQSDEERIEELEQQLKEAKR 106 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555555555555555555555555555555666666666666666666666666666
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 002676 687 ESVKTKQVQSFLLSEKQALARQLQQINALVESAKLRILHAEEQMKACLTEALRYNSEDRHLAVNLETTKWELADAEKELK 766 (894)
Q Consensus 687 e~~~~~~~~~~l~~e~~~l~~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~e~~~~~~~~~~l~~~l~~l~~~l~ 766 (894)
....+...|......+..+...+......++.+...+..++..+..+...+..+.............+..+|..|...+.
T Consensus 107 ~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lk 186 (237)
T PF00261_consen 107 RAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLK 186 (237)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 66666666776666667677777666666666666676777666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002676 767 WLKSAVTSSDKEYEQIQRKTEDMRKELENERNERKKLEEELME 809 (894)
Q Consensus 767 ~~~~~~~~~~~el~~~~~~l~e~~~~l~~~~~~~~~l~~~i~~ 809 (894)
........++..+..+...+..+...+..+...+..+..+++.
T Consensus 187 eaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~eld~ 229 (237)
T PF00261_consen 187 EAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEELDQ 229 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666666666666666666555555555543
No 56
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.84 E-value=1.8e-09 Score=77.42 Aligned_cols=44 Identities=34% Similarity=0.888 Sum_probs=37.6
Q ss_pred cccccccccCCcccc-cCCCcccHhHHhHhhccCCCCccCcCCCC
Q 002676 841 KCGVCFDRPKEVVIT-KCFHLFCNPCIQRNLEIRHRKCPGCGTAF 884 (894)
Q Consensus 841 ~C~iC~~~~~~~v~~-~CgH~fC~~C~~~~~~~~~~~CP~C~~~~ 884 (894)
.|+||++.+..++.+ +|||.||..|+..|+......||.|+..+
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 499999999666655 59999999999999986677899999764
No 57
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.83 E-value=0.00041 Score=75.44 Aligned_cols=47 Identities=15% Similarity=0.330 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002676 771 AVTSSDKEYEQIQRKTEDMRKELENERNERKKLEEELMEVNNKVAEL 817 (894)
Q Consensus 771 ~~~~~~~el~~~~~~l~e~~~~l~~~~~~~~~l~~~i~~l~~~i~~l 817 (894)
++.....++.+++..+.-...+-+....+...+...|..|+.++...
T Consensus 411 qlsE~~rel~Elks~lrv~qkEKEql~~EkQeL~~yi~~Le~r~~~~ 457 (546)
T PF07888_consen 411 QLSENRRELQELKSSLRVAQKEKEQLQEEKQELLEYIERLEQRLDKV 457 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555555555555555444555555556666666666666665443
No 58
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=98.83 E-value=0.00066 Score=77.42 Aligned_cols=341 Identities=15% Similarity=0.161 Sum_probs=160.9
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHhhhhhHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchH
Q 002676 341 VEEAQQDNINLS-KQLENLQNELNDDKYVHSSRLYNLVNDQLQHWNVEVERYKALTDSLLIDRSLVLRREKEINVRAESA 419 (894)
Q Consensus 341 l~~l~~~~~~l~-~~~~~l~~~l~~~~~~~~~~~~~~l~~~l~~l~~el~~~~~~~~~l~~e~~~l~~~~~~~~~~~e~~ 419 (894)
.+.+......+. ..+..+...|.+.+.....-.+......+..+...+..+...+..+..+++.+......-
T Consensus 62 fe~w~~~w~~i~~~~~~~ie~~L~~ae~~~~~~rf~ka~~~i~~~~~~l~~~e~~i~~i~~~l~~L~~~e~~n------- 134 (560)
T PF06160_consen 62 FEEWRQKWDEIVTKQLPEIEEQLFEAEEYADKYRFKKAKQAIKEIEEQLDEIEEDIKEILDELDELLESEEKN------- 134 (560)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 344444444444 344455555544444444445566666666666666666666666666665554442222
Q ss_pred HHHHchhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH
Q 002676 420 DAARNTVDDSESRIERLEVQLQKSIIEKNDLGLKMEEAIQDSGRKDIKAEFRVMASALSKEMGMMEAQLN--RWKETADE 497 (894)
Q Consensus 420 ~~~~~~~~~~~~~~~~l~~~l~~~~~el~~l~~~~~~~~~~~~~~~~~~el~~~~~~l~~~~~~l~~~~~--~~~~~~~~ 497 (894)
+..+..+......++..+...... .+ .....+......++........... .+..|..-
T Consensus 135 ----------r~~i~~l~~~y~~lrk~ll~~~~~-------~G--~a~~~Le~~L~~ie~~F~~f~~lt~~GD~~~A~ei 195 (560)
T PF06160_consen 135 ----------REEIEELKEKYRELRKELLAHSFS-------YG--PAIEELEKQLENIEEEFSEFEELTENGDYLEAREI 195 (560)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHhhhh-------hc--hhHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 455666666666666666555532 33 5556666666666666666655444 45566677
Q ss_pred HHHHHHHHHhhhHhhhhhhHHhHHhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhccCCCCcccHHHHHHHHHHH
Q 002676 498 ALSLREKAVSLKVSLSAKTNEQKRLTDKCVEQMAEIKSLKALIEKLQKDKLESQIMLDMYGQEGRDPRDLMEIKESERRA 577 (894)
Q Consensus 498 l~~l~~~~~~l~~~l~~~~~e~~~l~~~~~~~~~~l~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~ 577 (894)
+..++..+..+...++.+..-+..+...+. .++..+...+..+... ++.-..- .+...+..+
T Consensus 196 l~~l~~~~~~l~~~~e~IP~l~~~l~~~~P---~ql~eL~~gy~~m~~~------------gy~l~~~---~i~~~i~~i 257 (560)
T PF06160_consen 196 LEKLKEETDELEEIMEDIPKLYKELQKEFP---DQLEELKEGYREMEEE------------GYYLEHL---DIEEEIEQI 257 (560)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHhH---HHHHHHHHHHHHHHHC------------CCCCCCC---CHHHHHHHH
Confidence 777777777666555554443333333332 3444444444444432 2222211 123333334
Q ss_pred HHHHHHHHHhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 002676 578 HSQAEVLKNALDEHSLELRVKAANEAEAACQQRLSAAEAEIIELVAKLDASERDVMELEEAMKSKDREAEAYIAEMETIG 657 (894)
Q Consensus 578 ~~~~~~l~~~l~~~~~e~~~~~~~~~~~~l~~~i~~le~el~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~ 657 (894)
...+......|..+ .+..+......+..+|..+-..+..=-.........+..+...+.........+..++..+.
T Consensus 258 ~~~l~~~~~~L~~l----~l~~~~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e~~~v~ 333 (560)
T PF06160_consen 258 EEQLEEALALLKNL----ELDEVEEENEEIEERIDQLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQNKELKEELERVS 333 (560)
T ss_pred HHHHHHHHHHHHcC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444443333322 13333334444444444443333332233333444444444555555555555555555555
Q ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002676 658 QAFEDMQ---TQNQHLLQQVAERDDLNIKLVSESVKTKQVQSFLLSEKQALARQLQQINALVESAKLRILHAEEQ 729 (894)
Q Consensus 658 ~~~~~~~---~~~~~l~~~l~~~~~~~~~l~~e~~~~~~~~~~l~~e~~~l~~~l~~l~~~~~~~~~~~~~l~~~ 729 (894)
..|.--. .....+..++..+......+...+..-...+..+......+...+..+......+...+..+...
T Consensus 334 ~sY~L~~~e~~~~~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~d 408 (560)
T PF06160_consen 334 QSYTLNHNELEIVRELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKD 408 (560)
T ss_pred HhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5442111 11233333444444444444333333333344444444444444444444333333333333333
No 59
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=1.7e-09 Score=102.63 Aligned_cols=51 Identities=29% Similarity=0.580 Sum_probs=45.1
Q ss_pred cccccccccccCCcccccCCCcccHhHHhH-hhccCCCCccCcCCCCCCCCc
Q 002676 839 ILKCGVCFDRPKEVVITKCFHLFCNPCIQR-NLEIRHRKCPGCGTAFGQSDV 889 (894)
Q Consensus 839 ~l~C~iC~~~~~~~v~~~CgH~fC~~C~~~-~~~~~~~~CP~C~~~~~~~d~ 889 (894)
.+.|+||++....|+.++|||+||..|+-. |-..+.-.||.||.....++|
T Consensus 215 d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~v 266 (271)
T COG5574 215 DYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKKV 266 (271)
T ss_pred ccceeeeecccCCcccccccchhhHHHHHHHHHhhccccCchhhhhccchhh
Confidence 478999999999999999999999999999 655455569999999988876
No 60
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.79 E-value=0.00092 Score=76.72 Aligned_cols=154 Identities=10% Similarity=0.151 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002676 606 ACQQRLSAAEAEIIELVAKLDASERDVMELEEAMKSKDREAEAYIAEMETIGQAFEDMQTQNQHLLQQVAERDDLNIKLV 685 (894)
Q Consensus 606 ~l~~~i~~le~el~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~l~ 685 (894)
.++..+..++..+..+...+..+...+..+..++......+.....++..+...+......+..+..++..+++.+.+-.
T Consensus 680 ~v~~~i~~le~~~~~~~~~~~~~k~~l~~~~~El~~~~~~i~~~~p~i~~i~r~l~~~e~~~~~L~~~~n~ved~if~~f 759 (1141)
T KOG0018|consen 680 SVESKIHGLEMRLKYSKLDLEQLKRSLEQNELELQRTESEIDEFGPEISEIKRKLQNREGEMKELEERMNKVEDRIFKGF 759 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455556666666666666666666666666677777777777777777777777777778888888888888887777
Q ss_pred HhHHHHH-HHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 002676 686 SESVKTK-QVQ------SFLLSEKQALARQLQQINALVESAKLRILHAEEQMKACLTEALRYNSEDRHLAVNLETTKWEL 758 (894)
Q Consensus 686 ~e~~~~~-~~~------~~l~~e~~~l~~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~e~~~~~~~~~~l~~~l 758 (894)
+...... ..| .........++.++..+..+++-... .+....+..+...++.++.++..+......+...+
T Consensus 760 ~~~igv~ir~Yee~~~~~~~a~k~~ef~~q~~~l~~~l~fe~~--~d~~~~ve~~~~~v~~~~~~~~~~~~~e~~~~k~i 837 (1141)
T KOG0018|consen 760 CRRIGVRIREYEERELQQEFAKKRLEFENQKAKLENQLDFEKQ--KDTQRRVERWERSVEDLEKEIEGLKKDEEAAEKII 837 (1141)
T ss_pred hhhcCeeeehHHHHHHHHHHHHHHHHHHHHHHHHhhhhhheec--ccHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHH
Confidence 7654433 111 22223333344444444444432111 33444455555555555555555444444444444
Q ss_pred HHH
Q 002676 759 ADA 761 (894)
Q Consensus 759 ~~l 761 (894)
.++
T Consensus 838 ~e~ 840 (1141)
T KOG0018|consen 838 AEI 840 (1141)
T ss_pred hhH
Confidence 444
No 61
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=5.3e-10 Score=76.42 Aligned_cols=52 Identities=29% Similarity=0.634 Sum_probs=44.7
Q ss_pred ccccccccccCCcccccCCCcc-cHhHHhHhhccCCCCccCcCCCCCCCCccccc
Q 002676 840 LKCGVCFDRPKEVVITKCFHLF-CNPCIQRNLEIRHRKCPGCGTAFGQSDVRFVK 893 (894)
Q Consensus 840 l~C~iC~~~~~~~v~~~CgH~f-C~~C~~~~~~~~~~~CP~C~~~~~~~d~~~~~ 893 (894)
-.|.||++.+.+.|+..|||+- |+.|--+.++.....||+||+++. ||.+-|
T Consensus 8 dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~--dvIkTY 60 (62)
T KOG4172|consen 8 DECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIK--DVIKTY 60 (62)
T ss_pred cceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHH--HHHHhh
Confidence 4699999999999999999995 999999998877788999999983 454443
No 62
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.78 E-value=3.1e-09 Score=73.41 Aligned_cols=39 Identities=36% Similarity=0.960 Sum_probs=36.1
Q ss_pred ccccccccCCcccccCCCcccHhHHhHhhccCCCCccCc
Q 002676 842 CGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGC 880 (894)
Q Consensus 842 C~iC~~~~~~~v~~~CgH~fC~~C~~~~~~~~~~~CP~C 880 (894)
|+||++....+++++|||.||..|+..|+.....+||.|
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 899999999999999999999999999988667789998
No 63
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.78 E-value=0.00085 Score=75.83 Aligned_cols=59 Identities=19% Similarity=0.280 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhHHHHHHHHhhHHHHHHHHHHHHHH
Q 002676 221 KEEAKNLHEVMEIIHLKHKEYADQIENYISSHSVDQAEIQHLAGELEETMAELEESRRK 279 (894)
Q Consensus 221 ~~e~~~l~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~e~~~l~~~l~~~~~el~~~~~~ 279 (894)
..++......+..+.........+-..+.+.+.....+.+.+..++.++...+..+...
T Consensus 229 drEl~E~~~~l~~le~~r~~~~e~s~~~~~~~~~~~d~~~~~~~~i~ele~~l~~l~~e 287 (1200)
T KOG0964|consen 229 DRELNEINGELERLEEDRSSAPEESEQYIDALDKVEDESEDLKCEIKELENKLTNLREE 287 (1200)
T ss_pred hhHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 34455555555555555555555544444444444555555555555554444444443
No 64
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=98.77 E-value=7.9e-06 Score=79.13 Aligned_cols=21 Identities=19% Similarity=0.357 Sum_probs=12.9
Q ss_pred HhHHhHhhccCCCCccCcCCCCC
Q 002676 863 NPCIQRNLEIRHRKCPGCGTAFG 885 (894)
Q Consensus 863 ~~C~~~~~~~~~~~CP~C~~~~~ 885 (894)
..|+.. ...-.+||.||....
T Consensus 212 ~~~V~~--~d~iv~CP~CgRILy 232 (239)
T COG1579 212 LSKVRK--KDEIVFCPYCGRILY 232 (239)
T ss_pred HHHHhc--CCCCccCCccchHHH
Confidence 444444 334557999997653
No 65
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=98.76 E-value=0.0025 Score=80.05 Aligned_cols=17 Identities=18% Similarity=0.253 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHhHHHH
Q 002676 534 KSLKALIEKLQKDKLES 550 (894)
Q Consensus 534 ~~l~~~~~~l~~~~~~l 550 (894)
..+...+..+...+..+
T Consensus 514 ~~~~~~~~~~~~~~~~l 530 (1201)
T PF12128_consen 514 RQARRELEELRAQIAEL 530 (1201)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 66
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=98.74 E-value=0.0014 Score=75.96 Aligned_cols=29 Identities=28% Similarity=0.169 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 002676 529 QMAEIKSLKALIEKLQKDKLESQIMLDMY 557 (894)
Q Consensus 529 ~~~~l~~l~~~~~~l~~~~~~l~~~~~~~ 557 (894)
....|..++.++.++..++..+......+
T Consensus 659 ~d~~ie~le~e~~~l~~~~~~l~~~~~~~ 687 (1074)
T KOG0250|consen 659 FDDEIEDLEREASRLQKEILELENQRREA 687 (1074)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666666666555555444433
No 67
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.73 E-value=1.6e-05 Score=79.70 Aligned_cols=43 Identities=16% Similarity=0.319 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002676 773 TSSDKEYEQIQRKTEDMRKELENERNERKKLEEELMEVNNKVA 815 (894)
Q Consensus 773 ~~~~~el~~~~~~l~e~~~~l~~~~~~~~~l~~~i~~l~~~i~ 815 (894)
..++..+..+..++.+.....+.....+..++..+..|...+.
T Consensus 172 ~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~ 214 (237)
T PF00261_consen 172 DEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELE 214 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444433333444444444444444444433
No 68
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=98.59 E-value=0.0024 Score=70.45 Aligned_cols=24 Identities=25% Similarity=0.293 Sum_probs=9.4
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHH
Q 002676 256 QAEIQHLAGELEETMAELEESRRK 279 (894)
Q Consensus 256 ~~e~~~l~~~l~~~~~el~~~~~~ 279 (894)
+..+..++.++.+...+++.++.+
T Consensus 126 Q~ti~~~q~d~ke~etelE~~~sr 149 (1265)
T KOG0976|consen 126 QDTIQGAQDDKKENEIEIENLNSR 149 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHH
Confidence 333333333333334444444333
No 69
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.59 E-value=0.0022 Score=69.96 Aligned_cols=48 Identities=17% Similarity=0.286 Sum_probs=28.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002676 749 VNLETTKWELADAEKELKWLKSAVTSSDKEYEQIQRKTEDMRKELENE 796 (894)
Q Consensus 749 ~~~~~l~~~l~~l~~~l~~~~~~~~~~~~el~~~~~~l~e~~~~l~~~ 796 (894)
..+....+.+.++...+.-++.....+..+...+...|..+...++..
T Consensus 410 vqlsE~~rel~Elks~lrv~qkEKEql~~EkQeL~~yi~~Le~r~~~~ 457 (546)
T PF07888_consen 410 VQLSENRRELQELKSSLRVAQKEKEQLQEEKQELLEYIERLEQRLDKV 457 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345556666666666666666656666666666666666555555444
No 70
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=98.58 E-value=0.003 Score=71.36 Aligned_cols=42 Identities=19% Similarity=0.219 Sum_probs=18.1
Q ss_pred HHHHHHHhhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 002676 242 ADQIENYISSHSVDQAEIQHLAGELEETMAELEESRRKLVSL 283 (894)
Q Consensus 242 ~~~l~~~~~~~~~~~~e~~~l~~~l~~~~~el~~~~~~l~~~ 283 (894)
..++..++.++...+......-.+|+....-++.+..+|...
T Consensus 40 qeel~~~k~~l~~~E~~k~~~l~ELe~akr~veel~~kLe~~ 81 (522)
T PF05701_consen 40 QEELAKLKEQLEAAEREKAQALSELESAKRTVEELKLKLEKA 81 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333334444444444444444444444444433
No 71
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=98.57 E-value=0.0036 Score=71.89 Aligned_cols=47 Identities=13% Similarity=0.105 Sum_probs=20.1
Q ss_pred HHHHHHHhhhhhHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002676 355 LENLQNELNDDKYVHSSRLYNLVNDQLQHWNVEVERYKALTDSLLID 401 (894)
Q Consensus 355 ~~~l~~~l~~~~~~~~~~~~~~l~~~l~~l~~el~~~~~~~~~l~~e 401 (894)
+......+...........+..+...+......+..+...++.+...
T Consensus 88 l~~ae~~~~~~~f~~a~~~~~~~~~~l~~~e~~~~~i~~~l~~l~~~ 134 (569)
T PRK04778 88 LFEAEELNDKFRFRKAKHEINEIESLLDLIEEDIEQILEELQELLES 134 (569)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333444444444444444444444444443333
No 72
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=98.57 E-value=0.0024 Score=69.72 Aligned_cols=11 Identities=45% Similarity=0.292 Sum_probs=5.5
Q ss_pred hhHHHHHHhhh
Q 002676 139 EDMFLCRLLQV 149 (894)
Q Consensus 139 ~~~~l~~~~~~ 149 (894)
...||..+-+.
T Consensus 43 k~n~~~~l~~~ 53 (786)
T PF05483_consen 43 KVNFLPMLEQV 53 (786)
T ss_pred HhcchhHHHHh
Confidence 34566555433
No 73
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=98.53 E-value=0.00065 Score=73.94 Aligned_cols=38 Identities=21% Similarity=0.234 Sum_probs=26.8
Q ss_pred HHhHHhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 002676 517 NEQKRLTDKCVEQMAEIKSLKALIEKLQKDKLESQIML 554 (894)
Q Consensus 517 ~e~~~l~~~~~~~~~~l~~l~~~~~~l~~~~~~l~~~~ 554 (894)
.++..|.+.+..+.+.+..|+++-..|..++..++...
T Consensus 42 ~El~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~ 79 (546)
T KOG0977|consen 42 KELQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVV 79 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45666677777777777777777777777777776443
No 74
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=8.5e-09 Score=101.81 Aligned_cols=56 Identities=25% Similarity=0.650 Sum_probs=47.8
Q ss_pred HHhcccccccccccccccCCcccc-cCCCcccHhHHhHhhccCCCCccCcCCCCCCC
Q 002676 832 EIKDCKAILKCGVCFDRPKEVVIT-KCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQS 887 (894)
Q Consensus 832 e~~~l~~~l~C~iC~~~~~~~v~~-~CgH~fC~~C~~~~~~~~~~~CP~C~~~~~~~ 887 (894)
-+.++...+.|+||+..++.+.++ .|+|.||+.||...+...+..||+||+..+..
T Consensus 36 ~l~~~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~Sk 92 (381)
T KOG0311|consen 36 DLAMFDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSK 92 (381)
T ss_pred cHHHhhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhcccc
Confidence 344555668999999999888777 79999999999999998888999999988753
No 75
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=3.6e-08 Score=95.30 Aligned_cols=48 Identities=25% Similarity=0.658 Sum_probs=44.9
Q ss_pred ccccccccccCCcccccCCCcccHhHHhHhhccCCCCccCcCCCCCCC
Q 002676 840 LKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQS 887 (894)
Q Consensus 840 l~C~iC~~~~~~~v~~~CgH~fC~~C~~~~~~~~~~~CP~C~~~~~~~ 887 (894)
-.|+||+....-||.++|||.||+.||+..+....+.||+||.+|..+
T Consensus 8 ~eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~ 55 (324)
T KOG0824|consen 8 KECLICYNTGNCPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDST 55 (324)
T ss_pred CcceeeeccCCcCccccccchhhhhhhcchhhcCCCCCceecCCCCcc
Confidence 469999999999999999999999999999998888899999999864
No 76
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=98.51 E-value=3e-08 Score=88.74 Aligned_cols=46 Identities=33% Similarity=0.737 Sum_probs=41.7
Q ss_pred ccccccccccCCcccccCCCcccHhHHhHhhccCCCCccCcCCCCCC
Q 002676 840 LKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQ 886 (894)
Q Consensus 840 l~C~iC~~~~~~~v~~~CgH~fC~~C~~~~~~~~~~~CP~C~~~~~~ 886 (894)
+.|.||...|..||++.|||.||..|.-+.+. ....|.+|++....
T Consensus 197 F~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~-kg~~C~~Cgk~t~G 242 (259)
T COG5152 197 FLCGICKKDYESPVVTECGHSFCSLCAIRKYQ-KGDECGVCGKATYG 242 (259)
T ss_pred eeehhchhhccchhhhhcchhHHHHHHHHHhc-cCCcceecchhhcc
Confidence 68999999999999999999999999999888 57789999987653
No 77
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=98.47 E-value=7.1e-07 Score=105.38 Aligned_cols=27 Identities=19% Similarity=0.213 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 002676 797 RNERKKLEEELMEVNNKVAELTSETGE 823 (894)
Q Consensus 797 ~~~~~~l~~~i~~l~~~i~~l~~~~~~ 823 (894)
..++..++.++..+.++..+|..+...
T Consensus 605 ~~e~~~l~~~~~~~ekr~~RLkevf~~ 631 (722)
T PF05557_consen 605 EKEIAELKAELASAEKRNQRLKEVFKA 631 (722)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334566777777777777777777653
No 78
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=98.47 E-value=0.0054 Score=68.82 Aligned_cols=86 Identities=13% Similarity=0.247 Sum_probs=46.6
Q ss_pred HHHHHHHhhhHhhhhhhHHhHHhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhccCCCCccc--HHHHHHHHHHH
Q 002676 500 SLREKAVSLKVSLSAKTNEQKRLTDKCVEQMAEIKSLKALIEKLQKDKLESQIMLDMYGQEGRDPRD--LMEIKESERRA 577 (894)
Q Consensus 500 ~l~~~~~~l~~~l~~~~~e~~~l~~~~~~~~~~l~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~--i~~l~~~~~~~ 577 (894)
....++.+....++.++-+.+-.++....+..++..++..++.+..++..|+.....-.+....... +.++.....++
T Consensus 301 ~~k~emad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rL 380 (1243)
T KOG0971|consen 301 RYKEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARL 380 (1243)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHH
Confidence 3344444454444444444444455556666677777777777777777777666555444433332 33444444444
Q ss_pred HHHHHHHH
Q 002676 578 HSQAEVLK 585 (894)
Q Consensus 578 ~~~~~~l~ 585 (894)
...+-.|.
T Consensus 381 KdalVrLR 388 (1243)
T KOG0971|consen 381 KDALVRLR 388 (1243)
T ss_pred HHHHHHHH
Confidence 44444443
No 79
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=98.47 E-value=0.0066 Score=69.82 Aligned_cols=66 Identities=11% Similarity=0.244 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 002676 218 DMMKEEAKNLHEVMEIIHLKHKEYADQIENYISSHSVDQAEIQHLAGELEETMAELEESRRKLVSL 283 (894)
Q Consensus 218 ~~l~~e~~~l~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~e~~~l~~~l~~~~~el~~~~~~l~~~ 283 (894)
+.+...+..|+.++..+...+...+..+..+.+.+.-...+++.|+.+...+..-..+++..+..+
T Consensus 1228 ~~l~~~~~~lr~~l~~~~e~L~~~E~~Lsdi~~~~~~a~~~LesLq~~~~~l~~~~keL~e~~~~i 1293 (1758)
T KOG0994|consen 1228 AQLASATESLRRQLQALTEDLPQEEETLSDITNSLPLAGKDLESLQREFNGLLTTYKELREQLEKI 1293 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334455555566666666666666666666666555556666666666666665555555555544
No 80
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.43 E-value=0.0085 Score=69.16 Aligned_cols=36 Identities=25% Similarity=0.274 Sum_probs=16.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002676 747 LAVNLETTKWELADAEKELKWLKSAVTSSDKEYEQI 782 (894)
Q Consensus 747 ~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~el~~~ 782 (894)
....++.+++.+..++.++..++.....+...+...
T Consensus 805 ~~~~ve~~~~~v~~~~~~~~~~~~~e~~~~k~i~e~ 840 (1141)
T KOG0018|consen 805 TQRRVERWERSVEDLEKEIEGLKKDEEAAEKIIAEI 840 (1141)
T ss_pred HHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHhhH
Confidence 333444444444445555444444444444444333
No 81
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=98.39 E-value=0.0069 Score=66.26 Aligned_cols=17 Identities=18% Similarity=0.382 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 002676 63 QLDSQKHELQSLEAKIK 79 (894)
Q Consensus 63 ~l~~~~~~~~~L~~~~~ 79 (894)
=++.+++.|.+|+=.-+
T Consensus 114 ~IEaqrKaIqELQf~NE 130 (786)
T PF05483_consen 114 IIEAQRKAIQELQFENE 130 (786)
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 34555666666654333
No 82
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.38 E-value=0.0057 Score=64.99 Aligned_cols=33 Identities=15% Similarity=0.257 Sum_probs=17.6
Q ss_pred hHHhhhhhHHHHHHHHHHHHHHHHHHHhHHHHH
Q 002676 519 QKRLTDKCVEQMAEIKSLKALIEKLQKDKLESQ 551 (894)
Q Consensus 519 ~~~l~~~~~~~~~~l~~l~~~~~~l~~~~~~l~ 551 (894)
+..|...+..+...+..|...-..|...+..+.
T Consensus 6 L~~LNdRla~YIekVr~LE~~N~~Le~~i~~~~ 38 (312)
T PF00038_consen 6 LQSLNDRLASYIEKVRFLEQENKRLESEIEELR 38 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 444555555566666666655555555554443
No 83
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=98.38 E-value=0.0054 Score=67.02 Aligned_cols=39 Identities=21% Similarity=0.306 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhcccc
Q 002676 795 NERNERKKLEEELMEVNNKVAELTSETGEAAIQKLQDEIKDCKA 838 (894)
Q Consensus 795 ~~~~~~~~l~~~i~~l~~~i~~l~~~~~~~~~~~L~ee~~~l~~ 838 (894)
.....+.++.+++..+-.++..|-... ..|..+|..|+.
T Consensus 346 ~kd~~i~~mReec~~l~~Elq~LlD~k-----i~Ld~EI~~YRk 384 (546)
T KOG0977|consen 346 DKDAEIAKMREECQQLSVELQKLLDTK-----ISLDAEIAAYRK 384 (546)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhchH-----hHHHhHHHHHHH
Confidence 333444444444444444444443332 345566666655
No 84
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.38 E-value=0.0058 Score=64.96 Aligned_cols=44 Identities=20% Similarity=0.181 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002676 670 LLQQVAERDDLNIKLVSESVKTKQVQSFLLSEKQALARQLQQIN 713 (894)
Q Consensus 670 l~~~l~~~~~~~~~l~~e~~~~~~~~~~l~~e~~~l~~~l~~l~ 713 (894)
....+..++..+..+..++......|..+..-+-.|..+|....
T Consensus 260 ~~~~i~~le~el~~l~~~~~~~~~ey~~Ll~~K~~Ld~EIatYR 303 (312)
T PF00038_consen 260 YQAEIAELEEELAELREEMARQLREYQELLDVKLALDAEIATYR 303 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 33444455555555555555555555555555555555554433
No 85
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=2.3e-07 Score=91.82 Aligned_cols=46 Identities=26% Similarity=0.579 Sum_probs=40.2
Q ss_pred cccccccccccc-------------CCcccccCCCcccHhHHhHhhccCCCCccCcCCCC
Q 002676 838 AILKCGVCFDRP-------------KEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAF 884 (894)
Q Consensus 838 ~~l~C~iC~~~~-------------~~~v~~~CgH~fC~~C~~~~~~~~~~~CP~C~~~~ 884 (894)
..-.|.||++.+ +.|..+||||+|-.+|++.|.+ |+-.||+||.|+
T Consensus 286 ~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~E-RqQTCPICr~p~ 344 (491)
T COG5243 286 SDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLE-RQQTCPICRRPV 344 (491)
T ss_pred CCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHH-hccCCCcccCcc
Confidence 457899999872 2368899999999999999999 899999999994
No 86
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=98.36 E-value=2e-07 Score=73.36 Aligned_cols=40 Identities=30% Similarity=0.757 Sum_probs=32.3
Q ss_pred cccccccccCC-------------cccccCCCcccHhHHhHhhccCCCCccCcC
Q 002676 841 KCGVCFDRPKE-------------VVITKCFHLFCNPCIQRNLEIRHRKCPGCG 881 (894)
Q Consensus 841 ~C~iC~~~~~~-------------~v~~~CgH~fC~~C~~~~~~~~~~~CP~C~ 881 (894)
.|+||...+.+ .+..+|||.|...||..|+.. ...||+||
T Consensus 21 ~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR 73 (73)
T PF12678_consen 21 NCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQ-NNTCPLCR 73 (73)
T ss_dssp BETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTT-SSB-TTSS
T ss_pred cccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhc-CCcCCCCC
Confidence 59999998833 234489999999999999984 55999997
No 87
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=2.7e-07 Score=89.18 Aligned_cols=46 Identities=30% Similarity=0.624 Sum_probs=41.7
Q ss_pred ccccccccccCCcccccCCCcccHhHHhHhhccCCCCccCcCCCCCC
Q 002676 840 LKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQ 886 (894)
Q Consensus 840 l~C~iC~~~~~~~v~~~CgH~fC~~C~~~~~~~~~~~CP~C~~~~~~ 886 (894)
+.|-||...|.+||+++|||.||..|....+. +..+|++|+..+..
T Consensus 242 f~c~icr~~f~~pVvt~c~h~fc~~ca~~~~q-k~~~c~vC~~~t~g 287 (313)
T KOG1813|consen 242 FKCFICRKYFYRPVVTKCGHYFCEVCALKPYQ-KGEKCYVCSQQTHG 287 (313)
T ss_pred ccccccccccccchhhcCCceeehhhhccccc-cCCcceeccccccc
Confidence 57999999999999999999999999999888 67889999987653
No 88
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=98.25 E-value=5.3e-07 Score=63.45 Aligned_cols=49 Identities=31% Similarity=0.592 Sum_probs=41.4
Q ss_pred ccccccccccccCCcccccCCCcccHhHHhHhhccCCCCccCcCCCCCCCCc
Q 002676 838 AILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDV 889 (894)
Q Consensus 838 ~~l~C~iC~~~~~~~v~~~CgH~fC~~C~~~~~~~~~~~CP~C~~~~~~~d~ 889 (894)
....|-.|...-...++++|||+.|..|..-. |..-||+|+++|...|+
T Consensus 6 ~~~~~~~~~~~~~~~~~~pCgH~I~~~~f~~~---rYngCPfC~~~~~~~~~ 54 (55)
T PF14447_consen 6 PEQPCVFCGFVGTKGTVLPCGHLICDNCFPGE---RYNGCPFCGTPFEFDDP 54 (55)
T ss_pred cceeEEEccccccccccccccceeeccccChh---hccCCCCCCCcccCCCC
Confidence 34677788877788899999999999999877 66679999999998775
No 89
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.23 E-value=8.2e-07 Score=88.80 Aligned_cols=38 Identities=24% Similarity=0.611 Sum_probs=33.4
Q ss_pred cCCCcccHhHHhHhhccCCCCccCcCCCCCCCCccccc
Q 002676 856 KCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDVRFVK 893 (894)
Q Consensus 856 ~CgH~fC~~C~~~~~~~~~~~CP~C~~~~~~~d~~~~~ 893 (894)
+|||.||.+|+...+..+...||.|+.++..+++++..
T Consensus 25 ~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~fr~q~ 62 (309)
T TIGR00570 25 VCGHTLCESCVDLLFVRGSGSCPECDTPLRKNNFRVQL 62 (309)
T ss_pred CCCCcccHHHHHHHhcCCCCCCCCCCCccchhhccccc
Confidence 79999999999998876777899999999998876653
No 90
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=98.21 E-value=0.024 Score=64.92 Aligned_cols=32 Identities=22% Similarity=0.240 Sum_probs=19.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 002676 430 ESRIERLEVQLQKSIIEKNDLGLKMEEAIQDS 461 (894)
Q Consensus 430 ~~~~~~l~~~l~~~~~el~~l~~~~~~~~~~~ 461 (894)
..++.+++..-..+..+..++...+..+....
T Consensus 263 kdRveelkedN~vLleekeMLeeQLq~lrars 294 (1195)
T KOG4643|consen 263 KDRVEELKEDNRVLLEEKEMLEEQLQKLRARS 294 (1195)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcc
Confidence 45666666666666666666666666555554
No 91
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=8.4e-07 Score=84.78 Aligned_cols=47 Identities=30% Similarity=0.631 Sum_probs=39.6
Q ss_pred cccccccccccCCcccc-cCCCcccHhHHhHhhccC-CCCccCcCCCCC
Q 002676 839 ILKCGVCFDRPKEVVIT-KCFHLFCNPCIQRNLEIR-HRKCPGCGTAFG 885 (894)
Q Consensus 839 ~l~C~iC~~~~~~~v~~-~CgH~fC~~C~~~~~~~~-~~~CP~C~~~~~ 885 (894)
...||+|++.+..|.+. +|||+||+.|+.+..... ...||.||.+..
T Consensus 239 ~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 239 DTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred CceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 47899999999998665 699999999999986642 457999998876
No 92
>PF04641 Rtf2: Rtf2 RING-finger
Probab=98.19 E-value=8.4e-07 Score=90.10 Aligned_cols=56 Identities=21% Similarity=0.461 Sum_probs=46.7
Q ss_pred ccccccccccccccCC----cccccCCCcccHhHHhHhhccCCCCccCcCCCCCCCCccccc
Q 002676 836 CKAILKCGVCFDRPKE----VVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDVRFVK 893 (894)
Q Consensus 836 l~~~l~C~iC~~~~~~----~v~~~CgH~fC~~C~~~~~~~~~~~CP~C~~~~~~~d~~~~~ 893 (894)
....+.|||++..|.. +++.+|||+||..|+...- ....||.|+.+|...||.+|.
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k--~~~~Cp~c~~~f~~~DiI~Ln 169 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK--KSKKCPVCGKPFTEEDIIPLN 169 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc--ccccccccCCccccCCEEEec
Confidence 3456899999988854 5677999999999999983 355799999999999998764
No 93
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=8.7e-07 Score=85.44 Aligned_cols=46 Identities=28% Similarity=0.612 Sum_probs=40.0
Q ss_pred ccccccccccCC---cccccCCCcccHhHHhHhhccCCCCccCcCCCCC
Q 002676 840 LKCGVCFDRPKE---VVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFG 885 (894)
Q Consensus 840 l~C~iC~~~~~~---~v~~~CgH~fC~~C~~~~~~~~~~~CP~C~~~~~ 885 (894)
..|.||+..|.. .+.+||.|.|--.|+.+|+-.-..+||+||+++-
T Consensus 324 veCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iP 372 (374)
T COG5540 324 VECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIP 372 (374)
T ss_pred ceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCC
Confidence 789999998843 6788999999999999998855678999999874
No 94
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.15 E-value=0.024 Score=62.67 Aligned_cols=24 Identities=17% Similarity=0.223 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhh
Q 002676 799 ERKKLEEELMEVNNKVAELTSETG 822 (894)
Q Consensus 799 ~~~~l~~~i~~l~~~i~~l~~~~~ 822 (894)
++..++.++..+..+..++..+..
T Consensus 601 ev~qlk~ev~s~ekr~~rlk~vF~ 624 (716)
T KOG4593|consen 601 EVAQLKKEVESAEKRNQRLKEVFA 624 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666654
No 95
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=8.6e-07 Score=97.37 Aligned_cols=47 Identities=32% Similarity=0.740 Sum_probs=41.8
Q ss_pred cccccccccccccccCCcccccCCCcccHhHHhHhhccCCCCccCcCC
Q 002676 835 DCKAILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGT 882 (894)
Q Consensus 835 ~l~~~l~C~iC~~~~~~~v~~~CgH~fC~~C~~~~~~~~~~~CP~C~~ 882 (894)
.+...+.|+||++.|+.|++++|||.||..|+..++. ....||.|+.
T Consensus 9 ~~~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~-~~~~Cp~cr~ 55 (386)
T KOG2177|consen 9 VLQEELTCPICLEYFREPVLLPCGHNFCRACLTRSWE-GPLSCPVCRP 55 (386)
T ss_pred hccccccChhhHHHhhcCccccccchHhHHHHHHhcC-CCcCCcccCC
Confidence 3445699999999999999999999999999999988 5568999994
No 96
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=98.11 E-value=2.8e-05 Score=92.07 Aligned_cols=16 Identities=19% Similarity=-0.006 Sum_probs=7.2
Q ss_pred cCCCccc---HhHHhHhhc
Q 002676 856 KCFHLFC---NPCIQRNLE 871 (894)
Q Consensus 856 ~CgH~fC---~~C~~~~~~ 871 (894)
-.|..|+ ..-+..|+.
T Consensus 683 ~~~~~~~~~~~~~i~~~v~ 701 (722)
T PF05557_consen 683 LLESEFSPELEDLIEFWVE 701 (722)
T ss_dssp EE--CCHHCTHHHHHHHTT
T ss_pred eCCCchHHHHHHHHHHHHH
Confidence 3455664 444555655
No 97
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=98.09 E-value=1e-06 Score=88.01 Aligned_cols=48 Identities=27% Similarity=0.699 Sum_probs=42.7
Q ss_pred cccccccccCCcccccCCCcccHhHHhHhhccC-CCCccCcCCCCCCCC
Q 002676 841 KCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIR-HRKCPGCGTAFGQSD 888 (894)
Q Consensus 841 ~C~iC~~~~~~~v~~~CgH~fC~~C~~~~~~~~-~~~CP~C~~~~~~~d 888 (894)
-|.||.++-+++.|-+|||+.|..|+-.|-... ...||+||..+....
T Consensus 371 LCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGte 419 (563)
T KOG1785|consen 371 LCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGTE 419 (563)
T ss_pred HHHHhhccCCCcccccccchHHHHHHHhhcccCCCCCCCceeeEecccc
Confidence 799999999999999999999999999998655 567999998877654
No 98
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=98.09 E-value=1.4e-06 Score=64.08 Aligned_cols=44 Identities=27% Similarity=0.535 Sum_probs=30.8
Q ss_pred ccccccccccccCCcccc-cCCCcccHhHHhHhhc-cCCCCccCcC
Q 002676 838 AILKCGVCFDRPKEVVIT-KCFHLFCNPCIQRNLE-IRHRKCPGCG 881 (894)
Q Consensus 838 ~~l~C~iC~~~~~~~v~~-~CgH~fC~~C~~~~~~-~~~~~CP~C~ 881 (894)
..+.|||....|.+||.. .|||+|....|..++. .+...||+-|
T Consensus 10 ~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv~G 55 (57)
T PF11789_consen 10 ISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPVAG 55 (57)
T ss_dssp --SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SCCC
T ss_pred eccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCCCC
Confidence 448999999999999885 9999999999999994 3445699943
No 99
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=98.07 E-value=0.0062 Score=70.28 Aligned_cols=42 Identities=21% Similarity=0.349 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 002676 781 QIQRKTEDMRKELENERNERKKLEEELMEVNNKVAELTSETG 822 (894)
Q Consensus 781 ~~~~~l~e~~~~l~~~~~~~~~l~~~i~~l~~~i~~l~~~~~ 822 (894)
++-.-+.+...+++.....+..-+.+|.+|+.+|..+.+++.
T Consensus 619 dLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~~av~p 660 (697)
T PF09726_consen 619 DLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQLLAVMP 660 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 445556666777777777788888899999999999888885
No 100
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=1.2e-06 Score=99.31 Aligned_cols=49 Identities=24% Similarity=0.561 Sum_probs=43.0
Q ss_pred cccccccccccCC-----cccccCCCcccHhHHhHhhccCCCCccCcCCCCCCCC
Q 002676 839 ILKCGVCFDRPKE-----VVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSD 888 (894)
Q Consensus 839 ~l~C~iC~~~~~~-----~v~~~CgH~fC~~C~~~~~~~~~~~CP~C~~~~~~~d 888 (894)
...|+||.+.+.. +..++|||+||..|+..|++ +...||+||..+..+.
T Consensus 291 ~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~e-r~qtCP~CR~~~~~~~ 344 (543)
T KOG0802|consen 291 DELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFE-RQQTCPTCRTVLYDYV 344 (543)
T ss_pred CCeeeeechhhccccccccceeecccchHHHHHHHHHH-HhCcCCcchhhhhccc
Confidence 4689999998877 88999999999999999999 6888999999665443
No 101
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=98.05 E-value=0.059 Score=63.45 Aligned_cols=15 Identities=20% Similarity=0.339 Sum_probs=7.3
Q ss_pred HHhcccccccccccc
Q 002676 832 EIKDCKAILKCGVCF 846 (894)
Q Consensus 832 e~~~l~~~l~C~iC~ 846 (894)
.+...+..+.|..|.
T Consensus 908 ~~g~hRqe~~~k~~t 922 (1317)
T KOG0612|consen 908 VLGLHRQELTCKDCT 922 (1317)
T ss_pred HHHHHHHHHHHHHHh
Confidence 333444455565553
No 102
>PRK11637 AmiB activator; Provisional
Probab=98.02 E-value=0.012 Score=65.47 Aligned_cols=7 Identities=14% Similarity=-0.240 Sum_probs=3.3
Q ss_pred ccccccc
Q 002676 838 AILKCGV 844 (894)
Q Consensus 838 ~~l~C~i 844 (894)
..+.+|+
T Consensus 305 g~~~~Pv 311 (428)
T PRK11637 305 GQAFWPV 311 (428)
T ss_pred CCCccCC
Confidence 3445554
No 103
>PHA02562 46 endonuclease subunit; Provisional
Probab=98.00 E-value=0.014 Score=67.94 Aligned_cols=54 Identities=11% Similarity=0.127 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002676 736 EALRYNSEDRHLAVNLETTKWELADAEKELKWLKSAVTSSDKEYEQIQRKTEDM 789 (894)
Q Consensus 736 ~~~~l~~e~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~el~~~~~~l~e~ 789 (894)
.+..+...+......+..+......++.++..+......+..++..+..++.++
T Consensus 338 ~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~ 391 (562)
T PHA02562 338 KLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKI 391 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHH
Confidence 333333333333344444444444444444444433333333344444333333
No 104
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.00 E-value=2.6e-06 Score=89.58 Aligned_cols=49 Identities=31% Similarity=0.734 Sum_probs=44.0
Q ss_pred cccccccccccccCCcccccCCCcccHhHHhHhhccCCCCccCcCCCCCC
Q 002676 837 KAILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQ 886 (894)
Q Consensus 837 ~~~l~C~iC~~~~~~~v~~~CgH~fC~~C~~~~~~~~~~~CP~C~~~~~~ 886 (894)
...+.|.||...+..||.++|||.||..|+.+.+. ....||.|+.+|..
T Consensus 82 ~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld-~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 82 RSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLD-QETECPLCRDELVE 130 (398)
T ss_pred cchhhhhhhHhhcCCCccccccccccHHHHHHHhc-cCCCCccccccccc
Confidence 66799999999999999999999999999999777 56679999999864
No 105
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=97.99 E-value=3.3e-06 Score=66.33 Aligned_cols=47 Identities=30% Similarity=0.549 Sum_probs=35.7
Q ss_pred ccccccccccCC------------c-ccccCCCcccHhHHhHhhccC--CCCccCcCCCCCC
Q 002676 840 LKCGVCFDRPKE------------V-VITKCFHLFCNPCIQRNLEIR--HRKCPGCGTAFGQ 886 (894)
Q Consensus 840 l~C~iC~~~~~~------------~-v~~~CgH~fC~~C~~~~~~~~--~~~CP~C~~~~~~ 886 (894)
-.|+||...|.. | |.-.|+|.|-..||..|+.+. +..||+||.+|.-
T Consensus 22 d~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~ 83 (85)
T PF12861_consen 22 DVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWKF 83 (85)
T ss_pred CceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeeee
Confidence 457777665532 3 334899999999999999963 4579999999864
No 106
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.94 E-value=2.9e-06 Score=85.29 Aligned_cols=47 Identities=23% Similarity=0.672 Sum_probs=41.2
Q ss_pred cccccccccccCCcccccCCCcc-cHhHHhHhhccCCCCccCcCCCCCC
Q 002676 839 ILKCGVCFDRPKEVVITKCFHLF-CNPCIQRNLEIRHRKCPGCGTAFGQ 886 (894)
Q Consensus 839 ~l~C~iC~~~~~~~v~~~CgH~f-C~~C~~~~~~~~~~~CP~C~~~~~~ 886 (894)
--.|-||+...++++++||.|+- |..|.+..- ...++||+||.+|..
T Consensus 290 gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr-~q~n~CPICRqpi~~ 337 (349)
T KOG4265|consen 290 GKECVICLSESRDTVVLPCRHLCLCSGCAKSLR-YQTNNCPICRQPIEE 337 (349)
T ss_pred CCeeEEEecCCcceEEecchhhehhHhHHHHHH-HhhcCCCccccchHh
Confidence 46899999999999999999995 999998773 347789999999975
No 107
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=97.94 E-value=0.0091 Score=58.28 Aligned_cols=29 Identities=28% Similarity=0.403 Sum_probs=16.6
Q ss_pred ccccccccccCC----cccccCCCcccHhHHhH
Q 002676 840 LKCGVCFDRPKE----VVITKCFHLFCNPCIQR 868 (894)
Q Consensus 840 l~C~iC~~~~~~----~v~~~CgH~fC~~C~~~ 868 (894)
-.|+-|+-.... -|+.+=-=+||.+|..=
T Consensus 198 ~~C~GC~m~l~~~~~~~V~~~d~iv~CP~CgRI 230 (239)
T COG1579 198 RVCGGCHMKLPSQTLSKVRKKDEIVFCPYCGRI 230 (239)
T ss_pred CcccCCeeeecHHHHHHHhcCCCCccCCccchH
Confidence 479999865543 22222223478888643
No 108
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.94 E-value=0.016 Score=67.52 Aligned_cols=10 Identities=10% Similarity=-0.067 Sum_probs=5.0
Q ss_pred CCccCcCCCC
Q 002676 875 RKCPGCGTAF 884 (894)
Q Consensus 875 ~~CP~C~~~~ 884 (894)
+...++-.||
T Consensus 497 ~~~lilDEp~ 506 (562)
T PHA02562 497 TNLLILDEVF 506 (562)
T ss_pred cCeEEEeccc
Confidence 3444455555
No 109
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.92 E-value=4.4e-06 Score=85.14 Aligned_cols=46 Identities=26% Similarity=0.580 Sum_probs=39.1
Q ss_pred ccccccccccCC---cccccCCCcccHhHHhHhhccCCCCccCcCCCCC
Q 002676 840 LKCGVCFDRPKE---VVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFG 885 (894)
Q Consensus 840 l~C~iC~~~~~~---~v~~~CgH~fC~~C~~~~~~~~~~~CP~C~~~~~ 885 (894)
..|.||.+.|.. .+++||+|.|--.||+.|+....+.||+|...+.
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~ 278 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIR 278 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCC
Confidence 589999999966 6789999999999999999954344999997554
No 110
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.90 E-value=1.1e-06 Score=84.29 Aligned_cols=47 Identities=30% Similarity=0.741 Sum_probs=39.0
Q ss_pred ccccccccccCCcccccCCCcc-cHhHHhHhhccCCCCccCcCCCCCCCCccccc
Q 002676 840 LKCGVCFDRPKEVVITKCFHLF-CNPCIQRNLEIRHRKCPGCGTAFGQSDVRFVK 893 (894)
Q Consensus 840 l~C~iC~~~~~~~v~~~CgH~f-C~~C~~~~~~~~~~~CP~C~~~~~~~d~~~~~ 893 (894)
.-|.||++.+.+.++++|||+. |..|-.+. ..||+||..+.. +.+||
T Consensus 301 ~LC~ICmDaP~DCvfLeCGHmVtCt~CGkrm-----~eCPICRqyi~r--vvrif 348 (350)
T KOG4275|consen 301 RLCAICMDAPRDCVFLECGHMVTCTKCGKRM-----NECPICRQYIVR--VVRIF 348 (350)
T ss_pred HHHHHHhcCCcceEEeecCcEEeehhhcccc-----ccCchHHHHHHH--HHhhh
Confidence 5699999999999999999997 99998754 479999987754 44444
No 111
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=97.89 E-value=2.8e-06 Score=84.20 Aligned_cols=54 Identities=28% Similarity=0.735 Sum_probs=45.5
Q ss_pred HhcccccccccccccccCCc-ccccCCCcccHhHHhHhhccCCCCccCcCCCCCCC
Q 002676 833 IKDCKAILKCGVCFDRPKEV-VITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQS 887 (894)
Q Consensus 833 ~~~l~~~l~C~iC~~~~~~~-v~~~CgH~fC~~C~~~~~~~~~~~CP~C~~~~~~~ 887 (894)
+..+...+.|.+|..-|.++ .++-|.|+||.+||-+.+.. ...||+|+..++..
T Consensus 9 ~~~~n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~-~~~CP~C~i~ih~t 63 (331)
T KOG2660|consen 9 LTELNPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEE-SKYCPTCDIVIHKT 63 (331)
T ss_pred hhhcccceehhhccceeecchhHHHHHHHHHHHHHHHHHHH-hccCCccceeccCc
Confidence 34455668999999988885 55689999999999999996 78899999988875
No 112
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=97.89 E-value=0.071 Score=60.50 Aligned_cols=88 Identities=15% Similarity=0.172 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHhhhHhhhhhhHHhHHhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhccCCCCc-ccHHHHHHHH
Q 002676 496 DEALSLREKAVSLKVSLSAKTNEQKRLTDKCVEQMAEIKSLKALIEKLQKDKLESQIMLDMYGQEGRDP-RDLMEIKESE 574 (894)
Q Consensus 496 ~~l~~l~~~~~~l~~~l~~~~~e~~~l~~~~~~~~~~l~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~-~~i~~l~~~~ 574 (894)
.++..|..++..+...+..+..++..+...+..+..++.........+...+...+...+.+ .+. ..+.++..-+
T Consensus 328 ~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL----~d~e~ni~kL~~~v 403 (594)
T PF05667_consen 328 QELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELL----PDAEENIAKLQALV 403 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCcHHHHHHHHHHH
Confidence 44444444555555555455555555555555555555555555555555555444444322 222 2244455444
Q ss_pred HHHHHHHHHHHHh
Q 002676 575 RRAHSQAEVLKNA 587 (894)
Q Consensus 575 ~~~~~~~~~l~~~ 587 (894)
......+..|...
T Consensus 404 ~~s~~rl~~L~~q 416 (594)
T PF05667_consen 404 EASEQRLVELAQQ 416 (594)
T ss_pred HHHHHHHHHHHHH
Confidence 4444555555443
No 113
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=97.88 E-value=0.095 Score=60.31 Aligned_cols=43 Identities=16% Similarity=0.152 Sum_probs=25.8
Q ss_pred ccchhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 002676 47 SVDSAVLQYQNQKLVQQLDSQKHELQSLEAKIKELQEKQTSYD 89 (894)
Q Consensus 47 ~~d~~~lq~~~~~l~~~l~~~~~~~~~L~~~~~~l~~k~~~~~ 89 (894)
.-+.+|.+.--.-||.+.+-...+...-.-++-.|+.+....+
T Consensus 40 ng~e~ik~ll~llLg~avqcp~kelfi~riq~ldlete~a~~~ 82 (1195)
T KOG4643|consen 40 NGEEAIKQLLQLLLGSAVQCPTKELFIQRIQILDLETEMAQMR 82 (1195)
T ss_pred chHHHHHHHHHHHHHhhhcCCcHHHHHHHHHhhhhHHHHHHHH
Confidence 3345556666666777766666666666666666665544333
No 114
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.84 E-value=8.6e-06 Score=76.21 Aligned_cols=54 Identities=15% Similarity=0.246 Sum_probs=46.2
Q ss_pred ccccccccccccCC----cccccCCCcccHhHHhHhhccCCCCccCcCCCCCCCCcccc
Q 002676 838 AILKCGVCFDRPKE----VVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDVRFV 892 (894)
Q Consensus 838 ~~l~C~iC~~~~~~----~v~~~CgH~fC~~C~~~~~~~~~~~CP~C~~~~~~~d~~~~ 892 (894)
..+.||||.+.+.+ +|+.+|||+||..|+...+. ...-||+|+.+....||..+
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir-~D~v~pv~d~plkdrdiI~L 277 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIR-KDMVDPVTDKPLKDRDIIGL 277 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhcc-ccccccCCCCcCcccceEee
Confidence 45889999999887 45669999999999999988 45569999999999998754
No 115
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.84 E-value=6.5e-06 Score=79.07 Aligned_cols=43 Identities=37% Similarity=0.756 Sum_probs=38.8
Q ss_pred ccccccccccCCcccc-cCCCcccHhHHhHhhccCCCCccCcCC
Q 002676 840 LKCGVCFDRPKEVVIT-KCFHLFCNPCIQRNLEIRHRKCPGCGT 882 (894)
Q Consensus 840 l~C~iC~~~~~~~v~~-~CgH~fC~~C~~~~~~~~~~~CP~C~~ 882 (894)
+.|+.|+...++|+-+ -|||+||..||.+-+-....+||.|..
T Consensus 275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~r 318 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSR 318 (427)
T ss_pred ccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCCCccc
Confidence 8999999999999988 689999999999887656788999986
No 116
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.79 E-value=3.8e-06 Score=91.27 Aligned_cols=49 Identities=22% Similarity=0.532 Sum_probs=39.4
Q ss_pred cccccccccCCccc---ccCCCcccHhHHhHhhccCCCCccCcCCCCCCCCcc
Q 002676 841 KCGVCFDRPKEVVI---TKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDVR 890 (894)
Q Consensus 841 ~C~iC~~~~~~~v~---~~CgH~fC~~C~~~~~~~~~~~CP~C~~~~~~~d~~ 890 (894)
.||+|...|.+..+ .+|+|.||..|+..|... -..||+|++.|+.-+|.
T Consensus 125 ~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~-aqTCPiDR~EF~~v~V~ 176 (1134)
T KOG0825|consen 125 QCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRC-AQTCPVDRGEFGEVKVL 176 (1134)
T ss_pred hhhHHHHHHHHHhhccccccccccHHHHhhhhhhh-cccCchhhhhhheeeee
Confidence 68888887776322 389999999999999873 55799999999986654
No 117
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.79 E-value=0.06 Score=62.39 Aligned_cols=17 Identities=29% Similarity=0.493 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 002676 772 VTSSDKEYEQIQRKTED 788 (894)
Q Consensus 772 ~~~~~~el~~~~~~l~e 788 (894)
+..-+.+|.+++.+|.+
T Consensus 638 ~~~~d~ei~~lk~ki~~ 654 (697)
T PF09726_consen 638 LRKKDKEIEELKAKIAQ 654 (697)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444444443
No 118
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.78 E-value=0.035 Score=62.18 Aligned_cols=37 Identities=14% Similarity=0.143 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 002676 785 KTEDMRKELENERNERKKLEEELMEVNNKVAELTSET 821 (894)
Q Consensus 785 ~l~e~~~~l~~~~~~~~~l~~~i~~l~~~i~~l~~~~ 821 (894)
++.....+-++..-......+.+..|++.+..|+..-
T Consensus 905 ki~s~kqeqee~~v~~~~~~~~i~alk~~l~dL~q~~ 941 (970)
T KOG0946|consen 905 KIVSNKQEQEELLVLLADQKEKIQALKEALEDLNQPV 941 (970)
T ss_pred cccchhhhHHHHHHHHhhHHHHHHHHHHHHHHhCCCh
Confidence 3333344444444445555666666676666665544
No 119
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=97.73 E-value=0.063 Score=53.81 Aligned_cols=10 Identities=40% Similarity=0.627 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 002676 804 EEELMEVNNK 813 (894)
Q Consensus 804 ~~~i~~l~~~ 813 (894)
+.++..+...
T Consensus 234 ~~elre~~k~ 243 (294)
T COG1340 234 QNELRELEKK 243 (294)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 120
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=97.73 E-value=0.22 Score=60.02 Aligned_cols=38 Identities=26% Similarity=0.185 Sum_probs=30.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhccC
Q 002676 523 TDKCVEQMAEIKSLKALIEKLQKDKLESQIMLDMYGQE 560 (894)
Q Consensus 523 ~~~~~~~~~~l~~l~~~~~~l~~~~~~l~~~~~~~~~~ 560 (894)
......+.+.+..++.+++.....+..+......|..+
T Consensus 630 sgt~~~~~~~le~l~~eie~~rk~l~~lq~~s~~Y~k~ 667 (1294)
T KOG0962|consen 630 SGTIDEYLDLLERLKGEIEKARKDLAMLQGRSALYRKF 667 (1294)
T ss_pred ccchhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHH
Confidence 33446777888899999999999998888888777654
No 121
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=97.72 E-value=1.1e-05 Score=83.80 Aligned_cols=53 Identities=28% Similarity=0.725 Sum_probs=44.5
Q ss_pred ccccccccccccccCCcccccCCCcccHhHHhHhhc----cCCCCccCcCCCCCCCC
Q 002676 836 CKAILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLE----IRHRKCPGCGTAFGQSD 888 (894)
Q Consensus 836 l~~~l~C~iC~~~~~~~v~~~CgH~fC~~C~~~~~~----~~~~~CP~C~~~~~~~d 888 (894)
......|.+|+++-.+++.++|-|+||.-|+..++. ..+..||+|..+++..+
T Consensus 533 nk~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDl 589 (791)
T KOG1002|consen 533 NKGEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDL 589 (791)
T ss_pred ccCceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccccccc
Confidence 345578999999999999999999999999977655 34567999999987654
No 122
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=97.70 E-value=0.18 Score=57.90 Aligned_cols=81 Identities=14% Similarity=0.206 Sum_probs=37.5
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002676 636 EEAMKSKDREAEAYIAEMETIGQAFEDMQTQNQHLLQQVAERDDLNIKLVSESVKTKQVQSFLLSEKQALARQLQQINAL 715 (894)
Q Consensus 636 ~~~l~~~~~~~~~l~~e~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~e~~~~~~~~~~l~~e~~~l~~~l~~l~~~ 715 (894)
..++..+......+...+..-...+..+...+..+...+..++.....+...+..+...-......+..+...+......
T Consensus 350 ~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~ 429 (560)
T PF06160_consen 350 EKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRR 429 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444445555555555555554444444444444444444444444444444444433
Q ss_pred H
Q 002676 716 V 716 (894)
Q Consensus 716 ~ 716 (894)
+
T Consensus 430 l 430 (560)
T PF06160_consen 430 L 430 (560)
T ss_pred H
Confidence 3
No 123
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=97.68 E-value=9e-06 Score=95.89 Aligned_cols=14 Identities=14% Similarity=0.204 Sum_probs=0.0
Q ss_pred CCCCccCcCCCCCC
Q 002676 873 RHRKCPGCGTAFGQ 886 (894)
Q Consensus 873 ~~~~CP~C~~~~~~ 886 (894)
|+|.||.-|.+...
T Consensus 692 rqR~~~~~r~~~~~ 705 (713)
T PF05622_consen 692 RQRQATNARRGPSG 705 (713)
T ss_dssp --------------
T ss_pred HhhccccCCCCCCC
Confidence 67777766655543
No 124
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=97.65 E-value=0.15 Score=55.95 Aligned_cols=43 Identities=23% Similarity=0.149 Sum_probs=22.7
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002676 743 EDRHLAVNLETTKWELADAEKELKWLKSAVTSSDKEYEQIQRK 785 (894)
Q Consensus 743 e~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~el~~~~~~ 785 (894)
-+.+...++..++.++..++.....+...+.++..+++.+..+
T Consensus 860 ll~QreGElthlq~e~~~le~~Rs~laeElvklT~e~e~l~ek 902 (961)
T KOG4673|consen 860 LLRQREGELTHLQTELASLESIRSSLAEELVKLTAECEKLREK 902 (961)
T ss_pred HHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555566666666555555555555555555444433
No 125
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=97.64 E-value=0.052 Score=50.10 Aligned_cols=44 Identities=16% Similarity=0.174 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 002676 722 RILHAEEQMKACLTEALRYNSEDRHLAVNLETTKWELADAEKEL 765 (894)
Q Consensus 722 ~~~~l~~~l~~~~~~~~~l~~e~~~~~~~~~~l~~~l~~l~~~l 765 (894)
.+..+...++.+...+..+...-..+....+.....|..+...+
T Consensus 110 ~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKL 153 (205)
T KOG1003|consen 110 QSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKL 153 (205)
T ss_pred HHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333333333
No 126
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=97.60 E-value=0.18 Score=55.38 Aligned_cols=29 Identities=14% Similarity=0.160 Sum_probs=13.1
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHhhhhhH
Q 002676 74 LEAKIKELQEKQTSYDEMLITVNQLWNLF 102 (894)
Q Consensus 74 L~~~~~~l~~k~~~~~~~l~~~~~~~~~l 102 (894)
+..+|..|...+..-++.|...++.-..|
T Consensus 351 ~~~~i~~Ln~~leaReaqll~~e~~ka~l 379 (961)
T KOG4673|consen 351 TKKEIKMLNNALEAREAQLLADEIAKAML 379 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444433
No 127
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=97.60 E-value=1.4e-05 Score=94.27 Aligned_cols=18 Identities=11% Similarity=0.080 Sum_probs=0.0
Q ss_pred cccCCCcccHhHHhHhhc
Q 002676 854 ITKCFHLFCNPCIQRNLE 871 (894)
Q Consensus 854 ~~~CgH~fC~~C~~~~~~ 871 (894)
+++.++-+...|-.....
T Consensus 659 i~sa~y~~g~~~~~~~~~ 676 (713)
T PF05622_consen 659 IVSAWYNLGMRLHREAME 676 (713)
T ss_dssp ------------------
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444433
No 128
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.55 E-value=0.19 Score=54.63 Aligned_cols=62 Identities=23% Similarity=0.287 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHhccCCCCcccHHHHHHHHHHHHHHHHHHHHhhhhhhH
Q 002676 529 QMAEIKSLKALIEKLQKDKLESQIMLDMYGQEGRDPRDLMEIKESERRAHSQAEVLKNALDEHSL 593 (894)
Q Consensus 529 ~~~~l~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~l~~~l~~~~~ 593 (894)
+..++.....+++.++.....|+..++ .......++..+..+...+...+..+...++....
T Consensus 299 l~~Eie~kEeE~e~lq~~~d~Lk~~Ie---~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k 360 (581)
T KOG0995|consen 299 LKSEIEEKEEEIEKLQKENDELKKQIE---LQGISGEDVERMNLERNKLKRELNKIQSELDRLSK 360 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444555555555554443 22333445666666666677777777666655544
No 129
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=97.55 E-value=0.27 Score=56.17 Aligned_cols=29 Identities=31% Similarity=0.472 Sum_probs=13.4
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 002676 256 QAEIQHLAGELEETMAELEESRRKLVSLK 284 (894)
Q Consensus 256 ~~e~~~l~~~l~~~~~el~~~~~~l~~~~ 284 (894)
..++..|..+.......+..+...+..++
T Consensus 35 seev~~L~eEk~~~~~~V~eLE~sL~eLk 63 (617)
T PF15070_consen 35 SEEVRTLKEEKEHDISRVQELERSLSELK 63 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444555555555553
No 130
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.51 E-value=0.22 Score=54.18 Aligned_cols=98 Identities=13% Similarity=0.193 Sum_probs=44.7
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 002676 162 QYVEEALASRHSSARELMKFIEEVIDAQRVKTKSIAEAFHEKLSAEDAIIQLSKIDDMMKEEAKNLHEVMEIIHLKHKEY 241 (894)
Q Consensus 162 ~~~ee~l~~r~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~e~~~l~~~l~~l~~~~~~~ 241 (894)
..++..++.+.......+.. .++.+......+...+......+.....+.+....+...+..++.-+..+..+...+
T Consensus 216 ~~~~~Elk~~l~~~~~~i~~---~ie~l~~~n~~l~e~i~e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~ 292 (581)
T KOG0995|consen 216 SELEDELKHRLEKYFTSIAN---EIEDLKKTNRELEEMINEREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHM 292 (581)
T ss_pred chHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHH
Confidence 34445555555444443333 334444445555555554333344444444445555555555555555555444444
Q ss_pred HHHHHHHhhhhhhhHHHHHHH
Q 002676 242 ADQIENYISSHSVDQAEIQHL 262 (894)
Q Consensus 242 ~~~l~~~~~~~~~~~~e~~~l 262 (894)
...+..+...+...+.++..+
T Consensus 293 ~~~l~~l~~Eie~kEeE~e~l 313 (581)
T KOG0995|consen 293 EKKLEMLKSEIEEKEEEIEKL 313 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444433333333333333
No 131
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=97.50 E-value=5.1e-05 Score=81.71 Aligned_cols=53 Identities=32% Similarity=0.709 Sum_probs=45.8
Q ss_pred ccccccccccccccCCcccc-cCCCcccHhHHhHhhccCCCCccCcCCCCCCCCc
Q 002676 836 CKAILKCGVCFDRPKEVVIT-KCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDV 889 (894)
Q Consensus 836 l~~~l~C~iC~~~~~~~v~~-~CgH~fC~~C~~~~~~~~~~~CP~C~~~~~~~d~ 889 (894)
+...+.|++|...+.+|+.+ .|||.||..|+..|... ...||.|+........
T Consensus 18 ~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~-~~~cp~~~~~~~~~~~ 71 (391)
T KOG0297|consen 18 LDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSN-HQKCPVCRQELTQAEE 71 (391)
T ss_pred CcccccCccccccccCCCCCCCCCCcccccccchhhcc-CcCCcccccccchhhc
Confidence 45669999999999999995 99999999999999885 7889999877765543
No 132
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=97.47 E-value=2e-05 Score=73.41 Aligned_cols=48 Identities=33% Similarity=0.835 Sum_probs=38.5
Q ss_pred ccccccc-cccCCc--ccc--c-CCCcccHhHHhHhhccCCCCcc--CcCCCCCCC
Q 002676 840 LKCGVCF-DRPKEV--VIT--K-CFHLFCNPCIQRNLEIRHRKCP--GCGTAFGQS 887 (894)
Q Consensus 840 l~C~iC~-~~~~~~--v~~--~-CgH~fC~~C~~~~~~~~~~~CP--~C~~~~~~~ 887 (894)
-.||+|. ++|-+| +++ | |+|..|.+|+++.+.++...|| .|++.+...
T Consensus 11 ~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kILRK~ 66 (314)
T COG5220 11 RRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKILRKI 66 (314)
T ss_pred ccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHHHh
Confidence 5799998 566554 233 5 9999999999999998888999 899766544
No 133
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.44 E-value=5.4e-05 Score=78.03 Aligned_cols=49 Identities=27% Similarity=0.691 Sum_probs=39.2
Q ss_pred ccccccccccccCCcc-----c---ccCCCcccHhHHhHhhccCC------CCccCcCCCCCC
Q 002676 838 AILKCGVCFDRPKEVV-----I---TKCFHLFCNPCIQRNLEIRH------RKCPGCGTAFGQ 886 (894)
Q Consensus 838 ~~l~C~iC~~~~~~~v-----~---~~CgH~fC~~C~~~~~~~~~------~~CP~C~~~~~~ 886 (894)
....|.||++.....+ . .+|-|.||..|+..|-..++ +.||+||.+...
T Consensus 160 ~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~ 222 (344)
T KOG1039|consen 160 SEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSF 222 (344)
T ss_pred ccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcccc
Confidence 3578999998876654 2 57999999999999975544 679999987654
No 134
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=97.44 E-value=0.06 Score=48.84 Aligned_cols=8 Identities=13% Similarity=0.202 Sum_probs=2.8
Q ss_pred HHHHHHHH
Q 002676 673 QVAERDDL 680 (894)
Q Consensus 673 ~l~~~~~~ 680 (894)
++..++..
T Consensus 22 ~~K~le~~ 29 (143)
T PF12718_consen 22 KVKQLEQE 29 (143)
T ss_pred HHHHHHHH
Confidence 33333333
No 135
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.43 E-value=2.9e-05 Score=78.31 Aligned_cols=49 Identities=33% Similarity=0.619 Sum_probs=37.7
Q ss_pred cccccccccccCCcccccCCCcccHhHHhHhhccCCCCccCcCCCCCCCCccccc
Q 002676 839 ILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDVRFVK 893 (894)
Q Consensus 839 ~l~C~iC~~~~~~~v~~~CgH~fC~~C~~~~~~~~~~~CP~C~~~~~~~d~~~~~ 893 (894)
...|.||.+.+++.+.+||||+-| |..-... .++||.||..+.. ++++|
T Consensus 305 p~lcVVcl~e~~~~~fvpcGh~cc--ct~cs~~--l~~CPvCR~rI~~--~~k~y 353 (355)
T KOG1571|consen 305 PDLCVVCLDEPKSAVFVPCGHVCC--CTLCSKH--LPQCPVCRQRIRL--VRKRY 353 (355)
T ss_pred CCceEEecCCccceeeecCCcEEE--chHHHhh--CCCCchhHHHHHH--HHHHh
Confidence 358999999999999999999986 5544433 2459999988865 45554
No 136
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=97.40 E-value=0.4 Score=54.62 Aligned_cols=99 Identities=14% Similarity=0.197 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002676 653 METIGQAFEDMQTQNQHLLQQVAERDDLNIKLVSESVKTKQVQSFLLSEKQALARQLQQINALVESAKLRILHAEEQMKA 732 (894)
Q Consensus 653 ~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~e~~~~~~~~~~l~~e~~~l~~~l~~l~~~~~~~~~~~~~l~~~l~~ 732 (894)
+..+.........+.......+..+...+..+..++....+.+..|..+...+-..+. -..+...|-++-..++.
T Consensus 428 ~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~~~-----Rs~Yt~RIlEIv~NI~K 502 (594)
T PF05667_consen 428 YRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKDVN-----RSAYTRRILEIVKNIRK 502 (594)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHHhHHH
Confidence 3333333333333333444444444444444444444444444444443333333221 11233333334444444
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHH
Q 002676 733 CLTEALRYNSEDRHLAVNLETTKW 756 (894)
Q Consensus 733 ~~~~~~~l~~e~~~~~~~~~~l~~ 756 (894)
.+.++.+.-.+.+.++.++..+..
T Consensus 503 Qk~eI~KIl~DTr~lQkeiN~l~g 526 (594)
T PF05667_consen 503 QKEEIEKILSDTRELQKEINSLTG 526 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444443333
No 137
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=97.37 E-value=0.31 Score=52.64 Aligned_cols=11 Identities=18% Similarity=0.217 Sum_probs=4.1
Q ss_pred HHHHHHHHHhh
Q 002676 498 ALSLREKAVSL 508 (894)
Q Consensus 498 l~~l~~~~~~l 508 (894)
+......+..+
T Consensus 199 l~~~ee~~~~L 209 (570)
T COG4477 199 LEEAEEHMIAL 209 (570)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 138
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.34 E-value=4.4e-05 Score=57.17 Aligned_cols=46 Identities=26% Similarity=0.627 Sum_probs=34.8
Q ss_pred cccccccccCC------------cccc-cCCCcccHhHHhHhhccC--CCCccCcCCCCCC
Q 002676 841 KCGVCFDRPKE------------VVIT-KCFHLFCNPCIQRNLEIR--HRKCPGCGTAFGQ 886 (894)
Q Consensus 841 ~C~iC~~~~~~------------~v~~-~CgH~fC~~C~~~~~~~~--~~~CP~C~~~~~~ 886 (894)
.|.||.-.|.. |.++ .|.|.|=..||.+|+.+. +..||+||..|.-
T Consensus 22 ~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~~ 82 (84)
T KOG1493|consen 22 TCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQF 82 (84)
T ss_pred ccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeEe
Confidence 67777666533 3333 799999999999999864 4469999998853
No 139
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.27 E-value=0.00012 Score=72.33 Aligned_cols=46 Identities=28% Similarity=0.614 Sum_probs=41.0
Q ss_pred cccccccccccCCcccccCCCcccHhHHhHhhccCCCCccCcCCCCC
Q 002676 839 ILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFG 885 (894)
Q Consensus 839 ~l~C~iC~~~~~~~v~~~CgH~fC~~C~~~~~~~~~~~CP~C~~~~~ 885 (894)
.-.||||.-.+-+.|+.||||.-|+.||...+. ....|..|.+.+.
T Consensus 422 d~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlm-N~k~CFfCktTv~ 467 (489)
T KOG4692|consen 422 DNLCPICYAGPINAVFAPCSHRSCYGCITQHLM-NCKRCFFCKTTVI 467 (489)
T ss_pred cccCcceecccchhhccCCCCchHHHHHHHHHh-cCCeeeEecceee
Confidence 367999999999999999999999999999988 4566999998775
No 140
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=97.27 E-value=0.00023 Score=49.32 Aligned_cols=44 Identities=25% Similarity=0.658 Sum_probs=23.1
Q ss_pred ccccccccC--Ccccc--cCCCcccHhHHhHhhccCCCCccCcCCCCC
Q 002676 842 CGVCFDRPK--EVVIT--KCFHLFCNPCIQRNLEIRHRKCPGCGTAFG 885 (894)
Q Consensus 842 C~iC~~~~~--~~v~~--~CgH~fC~~C~~~~~~~~~~~CP~C~~~~~ 885 (894)
||+|.+.+. +..+. +||+-+|..|......+....||.||.++.
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y~ 48 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPYK 48 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B--
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCCC
Confidence 788987762 23333 799999999999998766889999999863
No 141
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=97.25 E-value=0.77 Score=54.65 Aligned_cols=12 Identities=42% Similarity=0.775 Sum_probs=6.6
Q ss_pred cccHhHHhHhhc
Q 002676 860 LFCNPCIQRNLE 871 (894)
Q Consensus 860 ~fC~~C~~~~~~ 871 (894)
++|..|--.++.
T Consensus 916 ~~~k~~t~ac~~ 927 (1317)
T KOG0612|consen 916 LTCKDCTLACLE 927 (1317)
T ss_pred HHHHHHhHHHHH
Confidence 356666555544
No 142
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=97.24 E-value=0.31 Score=49.91 Aligned_cols=55 Identities=18% Similarity=0.146 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 002676 644 REAEAYIAEMETIGQAFEDMQTQNQHLLQQVAERDDLNIKLVSESVKTKQVQSFL 698 (894)
Q Consensus 644 ~~~~~l~~e~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~e~~~~~~~~~~l 698 (894)
.+.+....+.......+......+..+..+..++...+..+..+...+......+
T Consensus 116 ~e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl 170 (499)
T COG4372 116 QEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSL 170 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333344444444433333333333333
No 143
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.22 E-value=0.00013 Score=75.73 Aligned_cols=48 Identities=21% Similarity=0.615 Sum_probs=38.9
Q ss_pred cccccccccccc-----------------CCcccccCCCcccHhHHhHhhccCCCCccCcCCCCC
Q 002676 838 AILKCGVCFDRP-----------------KEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFG 885 (894)
Q Consensus 838 ~~l~C~iC~~~~-----------------~~~v~~~CgH~fC~~C~~~~~~~~~~~CP~C~~~~~ 885 (894)
...-|+||+... ++-.++||.|+|-..|+..|.++..--||+||.+.-
T Consensus 570 ~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLP 634 (636)
T KOG0828|consen 570 RTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLP 634 (636)
T ss_pred ccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCC
Confidence 346799999653 224567999999999999999977667999999874
No 144
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.22 E-value=0.56 Score=52.56 Aligned_cols=78 Identities=15% Similarity=0.161 Sum_probs=37.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 002676 618 IIELVAKLDASERDVMELEEAMKSKDREAEAYIAEMETIGQAFEDMQTQNQHLLQQVAERDDLNIKLVSESVKTKQVQ 695 (894)
Q Consensus 618 l~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~e~~~~~~~~ 695 (894)
...|+.++..+...+..|...+....-.+.....+++.+....+-+...+..+..+|.+++..+..+..+...+...+
T Consensus 439 ~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~ql 516 (1118)
T KOG1029|consen 439 KKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNHQL 516 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 333333333333333333333333334444444455555555555555555555666666655555555554444444
No 145
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=97.22 E-value=0.28 Score=48.92 Aligned_cols=53 Identities=19% Similarity=0.240 Sum_probs=26.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002676 678 DDLNIKLVSESVKTKQVQSFLLSEKQALARQLQQINALVESAKLRILHAEEQM 730 (894)
Q Consensus 678 ~~~~~~l~~e~~~~~~~~~~l~~e~~~l~~~l~~l~~~~~~~~~~~~~l~~~l 730 (894)
+..+.+....-..+...+..++.+..-|..++.......+.-...+..++..+
T Consensus 206 ~~kv~k~~~Kqes~eERL~QlqsEN~LLrQQLddA~~K~~~kek~ViniQ~~f 258 (305)
T PF14915_consen 206 QDKVNKYIGKQESLEERLSQLQSENMLLRQQLDDAHNKADNKEKTVINIQDQF 258 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 33444444444444455555555555555566555555544444454454444
No 146
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=97.21 E-value=0.67 Score=53.10 Aligned_cols=38 Identities=16% Similarity=0.178 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002676 324 KDSVEEAKILAADRLSEVEEAQQDNINLSKQLENLQNE 361 (894)
Q Consensus 324 e~~l~~~~~~~~~~~~el~~l~~~~~~l~~~~~~l~~~ 361 (894)
...+..+...+..+..+.......+..|...+..++..
T Consensus 28 qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q 65 (617)
T PF15070_consen 28 QQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQ 65 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333444444444444444444444444444444444
No 147
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=97.16 E-value=8.5e-05 Score=73.31 Aligned_cols=55 Identities=22% Similarity=0.410 Sum_probs=46.0
Q ss_pred ccccccccccccCCc-ccccCCCcccHhHHhHhhccCCCCccCcCCCCCCCCccccc
Q 002676 838 AILKCGVCFDRPKEV-VITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDVRFVK 893 (894)
Q Consensus 838 ~~l~C~iC~~~~~~~-v~~~CgH~fC~~C~~~~~~~~~~~CP~C~~~~~~~d~~~~~ 893 (894)
..-.||+|....-+| |+..-|-+||..|+..+.. ...+||+-+.|....++.++|
T Consensus 299 ~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~-~~~~CPVT~~p~~v~~l~rl~ 354 (357)
T KOG0826|consen 299 DREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVV-NYGHCPVTGYPASVDHLIRLF 354 (357)
T ss_pred ccccChhHHhccCCCceEEecceEEeHHHHHHHHH-hcCCCCccCCcchHHHHHHHh
Confidence 446899999877665 5556799999999999998 578899999999988887776
No 148
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=97.15 E-value=0.42 Score=49.85 Aligned_cols=62 Identities=24% Similarity=0.289 Sum_probs=25.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002676 750 NLETTKWELADAEKELKWLKSAVTSSDKEYEQIQRKTEDMRKELENERNERKKLEEELMEVN 811 (894)
Q Consensus 750 ~~~~l~~~l~~l~~~l~~~~~~~~~~~~el~~~~~~l~e~~~~l~~~~~~~~~l~~~i~~l~ 811 (894)
+++.+...+..++.+...++.........+-.+..........+......+..|+.-+..|+
T Consensus 245 Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~~~~~~~~~~~~k~~kLe~LcRaLQ 306 (309)
T PF09728_consen 245 EMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQKLEKELEKLKKKIEKLEKLCRALQ 306 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333333333344444444333333333333333333333444444444444444444443
No 149
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=97.15 E-value=0.78 Score=52.87 Aligned_cols=49 Identities=16% Similarity=0.123 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhHHHHHHHHhhHHHH
Q 002676 221 KEEAKNLHEVMEIIHLKHKEYADQIENYISSHSVDQAEIQHLAGELEET 269 (894)
Q Consensus 221 ~~e~~~l~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~e~~~l~~~l~~~ 269 (894)
......+..+...+..+++.+...=..+-..++.++.+.-.|+..+..+
T Consensus 68 ~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQKqvs~L 116 (717)
T PF09730_consen 68 RKECEDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQKQVSVL 116 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333334444444444433333
No 150
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=97.12 E-value=0.37 Score=48.50 Aligned_cols=31 Identities=16% Similarity=0.188 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 002676 527 VEQMAEIKSLKALIEKLQKDKLESQIMLDMY 557 (894)
Q Consensus 527 ~~~~~~l~~l~~~~~~l~~~~~~l~~~~~~~ 557 (894)
..+......+...+..+...+..+....+.+
T Consensus 72 ~elK~kR~ein~kl~eL~~~~~~l~e~~~~~ 102 (294)
T COG1340 72 QELKEKRDEINAKLQELRKEYRELKEKRNEF 102 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3333333344444444445444554444433
No 151
>PRK09039 hypothetical protein; Validated
Probab=97.11 E-value=0.18 Score=53.61 Aligned_cols=7 Identities=14% Similarity=-0.553 Sum_probs=3.6
Q ss_pred cCCCccc
Q 002676 856 KCFHLFC 862 (894)
Q Consensus 856 ~CgH~fC 862 (894)
--||+=+
T Consensus 267 I~GHTD~ 273 (343)
T PRK09039 267 VDGHTDN 273 (343)
T ss_pred EEEecCC
Confidence 3566544
No 152
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=97.09 E-value=0.87 Score=52.20 Aligned_cols=15 Identities=27% Similarity=0.412 Sum_probs=7.8
Q ss_pred HHHHHHHHHHhcccc
Q 002676 824 AAIQKLQDEIKDCKA 838 (894)
Q Consensus 824 ~~~~~L~ee~~~l~~ 838 (894)
..+..++..+..+..
T Consensus 596 ~~~q~lq~al~~ld~ 610 (980)
T KOG0980|consen 596 SGIQALQNALYQLDS 610 (980)
T ss_pred HHHHHHHHHHHhcCC
Confidence 345555555555543
No 153
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.06 E-value=0.00031 Score=71.96 Aligned_cols=60 Identities=18% Similarity=0.319 Sum_probs=50.9
Q ss_pred cccccccccccccccC---CcccccCCCcccHhHHhHhhccCC--CCccCcCCCCCCCCcccccC
Q 002676 835 DCKAILKCGVCFDRPK---EVVITKCFHLFCNPCIQRNLEIRH--RKCPGCGTAFGQSDVRFVKI 894 (894)
Q Consensus 835 ~l~~~l~C~iC~~~~~---~~v~~~CgH~fC~~C~~~~~~~~~--~~CP~C~~~~~~~d~~~~~~ 894 (894)
.+...+.|||=.+--. -|+.+.|||+.|..-+.+...++. .|||-|-......|.++|||
T Consensus 330 ~fHSvF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e~~~~~~kql~F 394 (394)
T KOG2817|consen 330 HFHSVFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPVEQLASDTKQLYF 394 (394)
T ss_pred cccceeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCcccCHHhcccccC
Confidence 4567789999654332 289999999999999999988766 78999999999999999997
No 154
>PRK09039 hypothetical protein; Validated
Probab=97.04 E-value=0.14 Score=54.44 Aligned_cols=18 Identities=0% Similarity=0.128 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 002676 644 REAEAYIAEMETIGQAFE 661 (894)
Q Consensus 644 ~~~~~l~~e~~~l~~~~~ 661 (894)
.....+...+..+...+.
T Consensus 74 ~~~~~l~~~l~~l~~~l~ 91 (343)
T PRK09039 74 QGNQDLQDSVANLRASLS 91 (343)
T ss_pred HHHhhHHHHHHHHHHHHH
Confidence 333444444444444333
No 155
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.01 E-value=0.0004 Score=70.99 Aligned_cols=45 Identities=27% Similarity=0.780 Sum_probs=35.3
Q ss_pred cccccccccccCC---cccccCCCcccHhHHhHhhcc-------CCCCccCcCCC
Q 002676 839 ILKCGVCFDRPKE---VVITKCFHLFCNPCIQRNLEI-------RHRKCPGCGTA 883 (894)
Q Consensus 839 ~l~C~iC~~~~~~---~v~~~CgH~fC~~C~~~~~~~-------~~~~CP~C~~~ 883 (894)
.+.|.||++.... -+.+||+|+||..|...++.+ ..-+||.|+.+
T Consensus 184 lf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C~ 238 (445)
T KOG1814|consen 184 LFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKCG 238 (445)
T ss_pred cccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCCc
Confidence 4789999998766 456699999999999999885 22358876544
No 156
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=96.96 E-value=0.89 Score=50.26 Aligned_cols=80 Identities=19% Similarity=0.336 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH----HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002676 599 AANEAEAACQQRLSAAEAEIIELVAKLDASERDVMELEEA----MKSKDREAEAYIAEMETIGQAFEDMQTQNQHLLQQV 674 (894)
Q Consensus 599 ~~~~~~~~l~~~i~~le~el~~l~~~~~~~~~~~~~l~~~----l~~~~~~~~~l~~e~~~l~~~~~~~~~~~~~l~~~l 674 (894)
.+......+..++..++..+..+...+.....++..+... ......++..+..+++.....+..++..+..+..++
T Consensus 186 ~L~~~~~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql 265 (629)
T KOG0963|consen 186 GLKDEEQNLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQL 265 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444445555555555555555555444444444332 444455555666666666666666666666665555
Q ss_pred HHHH
Q 002676 675 AERD 678 (894)
Q Consensus 675 ~~~~ 678 (894)
....
T Consensus 266 ~~~N 269 (629)
T KOG0963|consen 266 AKAN 269 (629)
T ss_pred Hhhh
Confidence 5443
No 157
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=96.96 E-value=1.2 Score=51.56 Aligned_cols=28 Identities=21% Similarity=0.342 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002676 338 LSEVEEAQQDNINLSKQLENLQNELNDD 365 (894)
Q Consensus 338 ~~el~~l~~~~~~l~~~~~~l~~~l~~~ 365 (894)
..+.+.++.++..+..++.-+...+.+.
T Consensus 120 QvefE~~Khei~rl~Ee~~~l~~qlee~ 147 (717)
T PF09730_consen 120 QVEFEGLKHEIKRLEEEIELLNSQLEEA 147 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777777777766554
No 158
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=96.91 E-value=0.8 Score=48.98 Aligned_cols=68 Identities=10% Similarity=0.044 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 002676 214 SKIDDMMKEEAKNLHEVMEIIHLKHKEYADQIENYISSHSVDQAEIQHLAGELEETMAELEESRRKLV 281 (894)
Q Consensus 214 ~~~~~~l~~e~~~l~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~e~~~l~~~l~~~~~el~~~~~~l~ 281 (894)
......+.+++...+.++..+...+.....++........++.+.+..++.++..+.-+.+.+...+.
T Consensus 197 q~~y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq 264 (596)
T KOG4360|consen 197 QQLYGDCVKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQ 264 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 34555677788888888888888888887887777777777777777777776666666665554443
No 159
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=96.91 E-value=0.43 Score=45.82 Aligned_cols=31 Identities=16% Similarity=0.332 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002676 651 AEMETIGQAFEDMQTQNQHLLQQVAERDDLN 681 (894)
Q Consensus 651 ~e~~~l~~~~~~~~~~~~~l~~~l~~~~~~~ 681 (894)
.++..+...+...+.....+...+.+.+..+
T Consensus 68 eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el 98 (194)
T PF15619_consen 68 EEVRVLRERLRKSQEQERELERKLKDKDEEL 98 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333
No 160
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=96.90 E-value=0.00034 Score=79.98 Aligned_cols=48 Identities=27% Similarity=0.736 Sum_probs=41.0
Q ss_pred ccccccccccCCcccccCCCcccHhHHhHhhccCCC-CccCcCCCCCCCC
Q 002676 840 LKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHR-KCPGCGTAFGQSD 888 (894)
Q Consensus 840 l~C~iC~~~~~~~v~~~CgH~fC~~C~~~~~~~~~~-~CP~C~~~~~~~d 888 (894)
..|++|.+ ...+++++|||.||..|+...+..... +||.|+..+...+
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~ 503 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEKK 503 (674)
T ss_pred cccccccc-cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHHHH
Confidence 78999999 888999999999999999999885444 5999997765433
No 161
>PF13514 AAA_27: AAA domain
Probab=96.85 E-value=2.4 Score=53.59 Aligned_cols=32 Identities=16% Similarity=0.195 Sum_probs=15.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 002676 431 SRIERLEVQLQKSIIEKNDLGLKMEEAIQDSG 462 (894)
Q Consensus 431 ~~~~~l~~~l~~~~~el~~l~~~~~~~~~~~~ 462 (894)
..+..+...+..+...+..+...|...-...+
T Consensus 564 ~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~g 595 (1111)
T PF13514_consen 564 ARLARAQARLAAAEAALAALEAAWAALWAAAG 595 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 34444445555555555555555555444433
No 162
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=96.84 E-value=0.00069 Score=51.43 Aligned_cols=32 Identities=31% Similarity=0.551 Sum_probs=28.3
Q ss_pred cCCCcccHhHHhHhhccCCCCccCcCCCCCCCC
Q 002676 856 KCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSD 888 (894)
Q Consensus 856 ~CgH~fC~~C~~~~~~~~~~~CP~C~~~~~~~d 888 (894)
.|.|.|=..||.+|+.+ ..-||.|+..|.-.|
T Consensus 53 ~CnHaFH~HCI~rWL~T-k~~CPld~q~w~~~~ 84 (88)
T COG5194 53 VCNHAFHDHCIYRWLDT-KGVCPLDRQTWVLAD 84 (88)
T ss_pred ecchHHHHHHHHHHHhh-CCCCCCCCceeEEec
Confidence 79999999999999998 456999999997554
No 163
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=96.84 E-value=0.69 Score=47.08 Aligned_cols=18 Identities=22% Similarity=0.281 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHhH
Q 002676 671 LQQVAERDDLNIKLVSES 688 (894)
Q Consensus 671 ~~~l~~~~~~~~~l~~e~ 688 (894)
...+..++..+..+..+.
T Consensus 166 q~Klk~LEeEN~~LR~Ea 183 (306)
T PF04849_consen 166 QEKLKSLEEENEQLRSEA 183 (306)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333444333333333
No 164
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=96.83 E-value=0.39 Score=49.40 Aligned_cols=35 Identities=17% Similarity=0.085 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 002676 601 NEAEAACQQRLSAAEAEIIELVAKLDASERDVMEL 635 (894)
Q Consensus 601 ~~~~~~l~~~i~~le~el~~l~~~~~~~~~~~~~l 635 (894)
.++...+..+++..+.+.+.++...+.+......+
T Consensus 8 ~eAL~IL~~eLe~cq~ErDqyKlMAEqLqer~q~L 42 (319)
T PF09789_consen 8 SEALLILSQELEKCQSERDQYKLMAEQLQERYQAL 42 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555566666655555554444444333333
No 165
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=96.75 E-value=2.4 Score=52.25 Aligned_cols=11 Identities=9% Similarity=0.268 Sum_probs=6.6
Q ss_pred cchhHhhhhhH
Q 002676 48 VDSAVLQYQNQ 58 (894)
Q Consensus 48 ~d~~~lq~~~~ 58 (894)
+|+..|.++..
T Consensus 42 ldAI~~ALyG~ 52 (908)
T COG0419 42 LDAITFALYGK 52 (908)
T ss_pred HHHHHHHHcCC
Confidence 58877555544
No 166
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.75 E-value=1.4 Score=49.43 Aligned_cols=14 Identities=14% Similarity=0.188 Sum_probs=6.6
Q ss_pred cccccCCCcccHhH
Q 002676 852 VVITKCFHLFCNPC 865 (894)
Q Consensus 852 ~v~~~CgH~fC~~C 865 (894)
..++.||---=..|
T Consensus 650 ~ritS~ya~~~~~~ 663 (716)
T KOG4593|consen 650 YRLTSGYAEEPDDC 663 (716)
T ss_pred eeeeeeccCCCchh
Confidence 34445554444445
No 167
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.63 E-value=0.0011 Score=62.89 Aligned_cols=53 Identities=21% Similarity=0.394 Sum_probs=44.1
Q ss_pred cccccccccccccCC----cccccCCCcccHhHHhHhhccCCCCccCcCCCCCCCCcccc
Q 002676 837 KAILKCGVCFDRPKE----VVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDVRFV 892 (894)
Q Consensus 837 ~~~l~C~iC~~~~~~----~v~~~CgH~fC~~C~~~~~~~~~~~CP~C~~~~~~~d~~~~ 892 (894)
+..+.|||-+-.|.. .++..|||+|-..-++.. ....||.|+.+|...|+..|
T Consensus 109 ~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKei---kas~C~~C~a~y~~~dvIvl 165 (293)
T KOG3113|consen 109 RARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEI---KASVCHVCGAAYQEDDVIVL 165 (293)
T ss_pred cceeecccccceecceEEEEEEeccceeccHHHHHHh---hhccccccCCcccccCeEee
Confidence 456899998877655 667799999999988887 45679999999999998765
No 168
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.56 E-value=1.9 Score=48.55 Aligned_cols=37 Identities=19% Similarity=0.342 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002676 644 REAEAYIAEMETIGQAFEDMQTQNQHLLQQVAERDDL 680 (894)
Q Consensus 644 ~~~~~l~~e~~~l~~~~~~~~~~~~~l~~~l~~~~~~ 680 (894)
...+....++..+...+.+++..+..+..+...+..+
T Consensus 479 ~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~q 515 (1118)
T KOG1029|consen 479 KQRELMISEIDQLQARIKELQEKLQKLAPEKQELNHQ 515 (1118)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 3333333344444444444444444333333333333
No 169
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.55 E-value=0.0016 Score=62.81 Aligned_cols=46 Identities=33% Similarity=0.662 Sum_probs=37.4
Q ss_pred ccccccccCCcccccCCCc-ccHhHHhHhhccCCCCccCcCCCCCCCCcccccC
Q 002676 842 CGVCFDRPKEVVITKCFHL-FCNPCIQRNLEIRHRKCPGCGTAFGQSDVRFVKI 894 (894)
Q Consensus 842 C~iC~~~~~~~v~~~CgH~-fC~~C~~~~~~~~~~~CP~C~~~~~~~d~~~~~~ 894 (894)
|-.|+.+-..++++||.|+ +|..|-.+ -+.||.|+.+.... .+|||
T Consensus 161 Cr~C~~~~~~VlllPCrHl~lC~~C~~~-----~~~CPiC~~~~~s~--~~v~~ 207 (207)
T KOG1100|consen 161 CRKCGEREATVLLLPCRHLCLCGICDES-----LRICPICRSPKTSS--VEVNF 207 (207)
T ss_pred ceecCcCCceEEeecccceEeccccccc-----CccCCCCcChhhce--eeccC
Confidence 9999999999999999998 69999865 24599999987664 44443
No 170
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=96.47 E-value=1.2 Score=45.33 Aligned_cols=23 Identities=22% Similarity=0.226 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhH
Q 002676 607 CQQRLSAAEAEIIELVAKLDASE 629 (894)
Q Consensus 607 l~~~i~~le~el~~l~~~~~~~~ 629 (894)
++.++..++.+...|+.+...+.
T Consensus 165 Lq~Klk~LEeEN~~LR~Ea~~L~ 187 (306)
T PF04849_consen 165 LQEKLKSLEEENEQLRSEASQLK 187 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 44444444444444444444333
No 171
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=96.47 E-value=0.0075 Score=51.54 Aligned_cols=51 Identities=27% Similarity=0.598 Sum_probs=43.4
Q ss_pred ccccccccccccCCccccc----CCCcccHhHHhHhhcc--CCCCccCcCCCCCCCC
Q 002676 838 AILKCGVCFDRPKEVVITK----CFHLFCNPCIQRNLEI--RHRKCPGCGTAFGQSD 888 (894)
Q Consensus 838 ~~l~C~iC~~~~~~~v~~~----CgH~fC~~C~~~~~~~--~~~~CP~C~~~~~~~d 888 (894)
....|.||.+...+...++ ||-..|+-|.-..|+. -...||+|.+.|....
T Consensus 79 ~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss~ 135 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSSS 135 (140)
T ss_pred CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccccc
Confidence 5679999999988877774 9999999999999884 4567999999998754
No 172
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=96.39 E-value=2.7 Score=48.39 Aligned_cols=54 Identities=19% Similarity=0.247 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHHHHHHHHHHHH
Q 002676 434 ERLEVQLQKSIIEKNDLGLKMEEAIQDSG-RKDIKAEFRVMASALSKEMGMMEAQ 487 (894)
Q Consensus 434 ~~l~~~l~~~~~el~~l~~~~~~~~~~~~-~~~~~~el~~~~~~l~~~~~~l~~~ 487 (894)
.+|.++|..+..-+..+....+.+....- ++...-.|+.+...|...+..+..+
T Consensus 493 ~DLreEld~~~g~~kel~~r~~aaqet~yDrdqTI~KfRelva~Lqdqlqe~~dq 547 (1243)
T KOG0971|consen 493 LDLREELDMAKGARKELQKRVEAAQETVYDRDQTIKKFRELVAHLQDQLQELTDQ 547 (1243)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34445555554444444444444333322 4456667777777777766666544
No 173
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=96.39 E-value=0.68 Score=41.42 Aligned_cols=45 Identities=24% Similarity=0.113 Sum_probs=18.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002676 681 NIKLVSESVKTKQVQSFLLSEKQALARQLQQINALVESAKLRILH 725 (894)
Q Consensus 681 ~~~l~~e~~~~~~~~~~l~~e~~~l~~~l~~l~~~~~~~~~~~~~ 725 (894)
+..+..++..+...+..+..++..+...+...+..+..+......
T Consensus 61 l~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~ 105 (140)
T PF10473_consen 61 LEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLNSS 105 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 333333333333334444444444444444444444444333333
No 174
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=96.32 E-value=0.0019 Score=65.89 Aligned_cols=45 Identities=33% Similarity=0.796 Sum_probs=36.3
Q ss_pred ccccccccccccccCCcccccC--CCcccHhHHhHhhccCCCCccCcCCCCC
Q 002676 836 CKAILKCGVCFDRPKEVVITKC--FHLFCNPCIQRNLEIRHRKCPGCGTAFG 885 (894)
Q Consensus 836 l~~~l~C~iC~~~~~~~v~~~C--gH~fC~~C~~~~~~~~~~~CP~C~~~~~ 885 (894)
+-..+.||||+..+.-|+ ..| ||+.|..|.... ..+||+|+.+|+
T Consensus 45 ~~~lleCPvC~~~l~~Pi-~QC~nGHlaCssC~~~~----~~~CP~Cr~~~g 91 (299)
T KOG3002|consen 45 DLDLLDCPVCFNPLSPPI-FQCDNGHLACSSCRTKV----SNKCPTCRLPIG 91 (299)
T ss_pred chhhccCchhhccCcccc-eecCCCcEehhhhhhhh----cccCCccccccc
Confidence 345689999998887664 455 899999999755 447999999998
No 175
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=96.28 E-value=0.0022 Score=66.61 Aligned_cols=36 Identities=31% Similarity=0.768 Sum_probs=29.7
Q ss_pred CCCcccHhHHhHhhccCCC------------CccCcCCCCCCCCcccc
Q 002676 857 CFHLFCNPCIQRNLEIRHR------------KCPGCGTAFGQSDVRFV 892 (894)
Q Consensus 857 CgH~fC~~C~~~~~~~~~~------------~CP~C~~~~~~~d~~~~ 892 (894)
|.-++|.+|+-+|+-+|+. .||+||+.|.-.||..|
T Consensus 311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCilDV~~v 358 (358)
T PF10272_consen 311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCILDVCYV 358 (358)
T ss_pred ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccceeeeeecC
Confidence 4456799999999987653 39999999999998754
No 176
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.28 E-value=0.0019 Score=63.17 Aligned_cols=35 Identities=26% Similarity=0.792 Sum_probs=31.6
Q ss_pred cCCCcccHhHHhHhhccCCCCccCcCCCCCCCCcc
Q 002676 856 KCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDVR 890 (894)
Q Consensus 856 ~CgH~fC~~C~~~~~~~~~~~CP~C~~~~~~~d~~ 890 (894)
+|||..|.+|++..+..+...||.|+.+...+.++
T Consensus 22 ~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk~nfr 56 (300)
T KOG3800|consen 22 ECGHRLCESCVDRIFSLGPAQCPECMVILRKNNFR 56 (300)
T ss_pred cccchHHHHHHHHHHhcCCCCCCcccchhhhcccc
Confidence 89999999999999999999999999988776654
No 177
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=96.27 E-value=2 Score=45.52 Aligned_cols=61 Identities=15% Similarity=0.235 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 002676 224 AKNLHEVMEIIHLKHKEYADQIENYISSHSVDQAEIQHLAGELEETMAELEESRRKLVSLK 284 (894)
Q Consensus 224 ~~~l~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~e~~~l~~~l~~~~~el~~~~~~l~~~~ 284 (894)
+..+...+..++.....+..-...++.+...+-..+..|+.+++..+.+++.++.....+.
T Consensus 297 i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~~~d~L~ 357 (622)
T COG5185 297 IKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDELH 357 (622)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 3444444444444444444555555555556666666666666666667776666666664
No 178
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.23 E-value=0.0011 Score=71.28 Aligned_cols=38 Identities=29% Similarity=0.690 Sum_probs=31.8
Q ss_pred ccccccccccccCC----cccccCCCcccHhHHhHhhccCCCCcc
Q 002676 838 AILKCGVCFDRPKE----VVITKCFHLFCNPCIQRNLEIRHRKCP 878 (894)
Q Consensus 838 ~~l~C~iC~~~~~~----~v~~~CgH~fC~~C~~~~~~~~~~~CP 878 (894)
..+.|+||+..|.. ||.+.|||+.|..|+...+. +.||
T Consensus 10 ~~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn---~scp 51 (861)
T KOG3161|consen 10 LLLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYN---ASCP 51 (861)
T ss_pred HHhhchHHHHHHHHHhcCcccccccchHHHHHHHhHhh---ccCC
Confidence 44789999877643 99999999999999999865 5688
No 179
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=96.23 E-value=0.2 Score=41.99 Aligned_cols=79 Identities=19% Similarity=0.307 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002676 650 IAEMETIGQAFEDMQTQNQHLLQQVAERDDLNIKLVSESVKTKQVQSFLLSEKQALARQLQQINALVESAKLRILHAEE 728 (894)
Q Consensus 650 ~~e~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~e~~~~~~~~~~l~~e~~~l~~~l~~l~~~~~~~~~~~~~l~~ 728 (894)
..|+..+..++............++..++..+..+..++.+..+.|..+...++.+..++..++..+......+..+..
T Consensus 2 ~~EL~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~~~i~~L~~ 80 (96)
T PF08647_consen 2 QTELVSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSSELIEQLKE 80 (96)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 4677888888999999999999999999999999999999999999999999999999999888888776666666555
No 180
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=96.21 E-value=3.4 Score=47.68 Aligned_cols=13 Identities=15% Similarity=0.815 Sum_probs=5.8
Q ss_pred hhHHHHHHHhhhh
Q 002676 88 YDEMLITVNQLWN 100 (894)
Q Consensus 88 ~~~~l~~~~~~~~ 100 (894)
|...+..+-+.|.
T Consensus 84 ~r~~i~~l~r~w~ 96 (980)
T KOG0980|consen 84 YKKWITQLGRMWG 96 (980)
T ss_pred HHHHHHHHHHHhc
Confidence 3444444444444
No 181
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=96.11 E-value=5.5 Score=49.20 Aligned_cols=9 Identities=11% Similarity=-0.201 Sum_probs=4.0
Q ss_pred ccccCCCcc
Q 002676 853 VITKCFHLF 861 (894)
Q Consensus 853 v~~~CgH~f 861 (894)
..++=|-.|
T Consensus 814 ~~LSGGE~~ 822 (908)
T COG0419 814 KTLSGGERF 822 (908)
T ss_pred ccCCchHHH
Confidence 334445444
No 182
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.09 E-value=0.0083 Score=68.12 Aligned_cols=46 Identities=22% Similarity=0.348 Sum_probs=32.7
Q ss_pred HHHHHHHHhcccccccccccccccCC--cccccCCCcccHhHHhHhhc
Q 002676 826 IQKLQDEIKDCKAILKCGVCFDRPKE--VVITKCFHLFCNPCIQRNLE 871 (894)
Q Consensus 826 ~~~L~ee~~~l~~~l~C~iC~~~~~~--~v~~~CgH~fC~~C~~~~~~ 871 (894)
++.+..-+.-+...-.|.+|+.++-. -++.+|||.|-..|+-....
T Consensus 804 ~~~l~~ry~v~ep~d~C~~C~~~ll~~pF~vf~CgH~FH~~Cl~~~v~ 851 (911)
T KOG2034|consen 804 ISKLRQRYRVLEPQDSCDHCGRPLLIKPFYVFPCGHCFHRDCLIRHVL 851 (911)
T ss_pred HHHhhcceEEecCccchHHhcchhhcCcceeeeccchHHHHHHHHHHH
Confidence 33444445555556689999987633 46779999999999987654
No 183
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.03 E-value=0.0026 Score=61.35 Aligned_cols=34 Identities=29% Similarity=0.803 Sum_probs=30.6
Q ss_pred cccccccccccCCcccccC----CCcccHhHHhHhhcc
Q 002676 839 ILKCGVCFDRPKEVVITKC----FHLFCNPCIQRNLEI 872 (894)
Q Consensus 839 ~l~C~iC~~~~~~~v~~~C----gH~fC~~C~~~~~~~ 872 (894)
.|.|.+|++++.|+.+..| .|-||+.|....++.
T Consensus 268 pLcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSResIK~ 305 (352)
T KOG3579|consen 268 PLCCTLCHERLEDTHFVQCPSVPSHKFCFPCSRESIKQ 305 (352)
T ss_pred ceeehhhhhhhccCceeecCCCcccceecccCHHHHHh
Confidence 4899999999999999988 588999999998884
No 184
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.01 E-value=0.012 Score=66.32 Aligned_cols=72 Identities=19% Similarity=0.434 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhcccccccccccccccCCc-ccccCCCcccHhHHhHhhcc
Q 002676 794 ENERNERKKLEEELMEVNNKVAELTSETGEAAIQKLQDEIKDCKAILKCGVCFDRPKEV-VITKCFHLFCNPCIQRNLEI 872 (894)
Q Consensus 794 ~~~~~~~~~l~~~i~~l~~~i~~l~~~~~~~~~~~L~ee~~~l~~~l~C~iC~~~~~~~-v~~~CgH~fC~~C~~~~~~~ 872 (894)
+..+..++..++++.+.+.++..+..... +-..-+|+.|.-...-| |...|||.|-..|+..
T Consensus 808 ~qd~~~Ie~yk~~i~e~r~~l~~lr~sa~-------------i~q~skCs~C~~~LdlP~VhF~CgHsyHqhC~e~---- 870 (933)
T KOG2114|consen 808 EQDEDAIEVYKKDIEEKRQELETLRTSAQ-------------IFQVSKCSACEGTLDLPFVHFLCGHSYHQHCLED---- 870 (933)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHhhcccc-------------eeeeeeecccCCccccceeeeecccHHHHHhhcc----
Confidence 33334444555555555555555443331 11225899999887776 5569999999999982
Q ss_pred CCCCccCcCC
Q 002676 873 RHRKCPGCGT 882 (894)
Q Consensus 873 ~~~~CP~C~~ 882 (894)
...+||.|..
T Consensus 871 ~~~~CP~C~~ 880 (933)
T KOG2114|consen 871 KEDKCPKCLP 880 (933)
T ss_pred CcccCCccch
Confidence 3558999987
No 185
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=95.99 E-value=0.0016 Score=72.49 Aligned_cols=53 Identities=28% Similarity=0.700 Sum_probs=42.9
Q ss_pred HHhcccccccccccccccCCcccccCCCcccHhHHhHhhccC--CCCccCcCCCC
Q 002676 832 EIKDCKAILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIR--HRKCPGCGTAF 884 (894)
Q Consensus 832 e~~~l~~~l~C~iC~~~~~~~v~~~CgH~fC~~C~~~~~~~~--~~~CP~C~~~~ 884 (894)
-+..+...+.|+||...++.|+.++|+|.||..|+...+... ...||+|+...
T Consensus 14 vi~~~~k~lEc~ic~~~~~~p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~ 68 (684)
T KOG4362|consen 14 VINAMQKILECPICLEHVKEPSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDI 68 (684)
T ss_pred HHHHHhhhccCCceeEEeeccchhhhhHHHHhhhhhceeeccCccccchhhhhhh
Confidence 344555669999999999999999999999999999887742 23599998543
No 186
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.97 E-value=0.0029 Score=66.50 Aligned_cols=36 Identities=25% Similarity=0.476 Sum_probs=31.5
Q ss_pred cCCcccccCCCcccHhHHhHhhccCCCCccCcCCCC
Q 002676 849 PKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAF 884 (894)
Q Consensus 849 ~~~~v~~~CgH~fC~~C~~~~~~~~~~~CP~C~~~~ 884 (894)
-..|.+++|||+||..|+...+......||+||.+.
T Consensus 19 ~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 19 DHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETT 54 (296)
T ss_pred ccCCcccccCceehHhHHHHHhcCceeeccCCCCcc
Confidence 345778889999999999999998777899999994
No 187
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.97 E-value=0.0029 Score=62.73 Aligned_cols=47 Identities=23% Similarity=0.523 Sum_probs=38.1
Q ss_pred cccccccccccCCcccccCCCcccHhHHhHhhc-cCCCCccCcCCCCC
Q 002676 839 ILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLE-IRHRKCPGCGTAFG 885 (894)
Q Consensus 839 ~l~C~iC~~~~~~~v~~~CgH~fC~~C~~~~~~-~~~~~CP~C~~~~~ 885 (894)
...|-||.....-..++||||..|+.|.-+.-. .....||+|++...
T Consensus 61 n~~C~ICA~~~TYs~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~e 108 (493)
T COG5236 61 NMNCQICAGSTTYSARYPCGHQICHACAVRLRALYMQKGCPLCRTETE 108 (493)
T ss_pred cceeEEecCCceEEEeccCCchHHHHHHHHHHHHHhccCCCccccccc
Confidence 368999999988889999999999999876532 23556999998653
No 188
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=95.95 E-value=0.0033 Score=62.16 Aligned_cols=51 Identities=22% Similarity=0.615 Sum_probs=39.8
Q ss_pred cccccccc--CCc--ccccCCCcccHhHHhHhhccCCCCccCcCCCCCCCCcccc
Q 002676 842 CGVCFDRP--KEV--VITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDVRFV 892 (894)
Q Consensus 842 C~iC~~~~--~~~--v~~~CgH~fC~~C~~~~~~~~~~~CP~C~~~~~~~d~~~~ 892 (894)
||.|.+.+ .+- .-.+||-..|..|....-..-...||.||..+...+|+.+
T Consensus 17 cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~denv~~~ 71 (480)
T COG5175 17 CPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDDENVRYV 71 (480)
T ss_pred CcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhccccceeEE
Confidence 99999875 232 2337899889999877766566789999999998887654
No 189
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.92 E-value=0.002 Score=61.79 Aligned_cols=50 Identities=22% Similarity=0.421 Sum_probs=38.5
Q ss_pred cccccccccccCC----------cccccCCCcccHhHHhHhhccC-CCCccCcCCCCCCCC
Q 002676 839 ILKCGVCFDRPKE----------VVITKCFHLFCNPCIQRNLEIR-HRKCPGCGTAFGQSD 888 (894)
Q Consensus 839 ~l~C~iC~~~~~~----------~v~~~CgH~fC~~C~~~~~~~~-~~~CP~C~~~~~~~d 888 (894)
.-.|.||+..+.. ...+.|+|+|-..||..|.=-+ ...||-|...+....
T Consensus 224 d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl~r 284 (328)
T KOG1734|consen 224 DSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKR 284 (328)
T ss_pred cchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhHhh
Confidence 3579999987744 4577999999999999996533 335999998876543
No 190
>PF13514 AAA_27: AAA domain
Probab=95.80 E-value=8.4 Score=48.81 Aligned_cols=61 Identities=13% Similarity=0.213 Sum_probs=28.9
Q ss_pred hHHhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhccCCCCc--ccHHHHHHHHHHHHH
Q 002676 519 QKRLTDKCVEQMAEIKSLKALIEKLQKDKLESQIMLDMYGQEGRDP--RDLMEIKESERRAHS 579 (894)
Q Consensus 519 ~~~l~~~~~~~~~~l~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~--~~i~~l~~~~~~~~~ 579 (894)
+..+......+...+..+...+..+...+..+...+..+......+ ..+...+.....++.
T Consensus 454 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~t~~~l~~aR~~Rd~~W~ 516 (1111)
T PF13514_consen 454 VEAFRAEFEELERQLRRARDRLEELEEELARLEARLRRLAAAGDVPTEEELAAARARRDAAWQ 516 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhc
Confidence 3344444444445555555555555555555555554444333222 225555554444443
No 191
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=95.74 E-value=0.0028 Score=49.34 Aligned_cols=47 Identities=26% Similarity=0.627 Sum_probs=23.6
Q ss_pred ccccccccccC-C---c--ccc--cCCCcccHhHHhHhhcc----C------CCCccCcCCCCCC
Q 002676 840 LKCGVCFDRPK-E---V--VIT--KCFHLFCNPCIQRNLEI----R------HRKCPGCGTAFGQ 886 (894)
Q Consensus 840 l~C~iC~~~~~-~---~--v~~--~CgH~fC~~C~~~~~~~----~------~~~CP~C~~~~~~ 886 (894)
+.|+||+..+- + | +.. +||+.|=..|+..|+.. + ...||.|+.++.-
T Consensus 3 ~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~ 67 (70)
T PF11793_consen 3 LECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISW 67 (70)
T ss_dssp -S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEG
T ss_pred CCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeE
Confidence 67999997653 2 2 222 79999999999999873 2 1249999998753
No 192
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=95.60 E-value=0.0055 Score=49.31 Aligned_cols=29 Identities=34% Similarity=0.582 Sum_probs=25.8
Q ss_pred cCCCcccHhHHhHhhccCCCCccCcCCCCC
Q 002676 856 KCFHLFCNPCIQRNLEIRHRKCPGCGTAFG 885 (894)
Q Consensus 856 ~CgH~fC~~C~~~~~~~~~~~CP~C~~~~~ 885 (894)
.|.|.|-+.||.+|+++|++ ||.|.....
T Consensus 80 ~CNHaFH~hCisrWlktr~v-CPLdn~eW~ 108 (114)
T KOG2930|consen 80 VCNHAFHFHCISRWLKTRNV-CPLDNKEWV 108 (114)
T ss_pred ecchHHHHHHHHHHHhhcCc-CCCcCccee
Confidence 79999999999999998755 999998764
No 193
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=95.59 E-value=1.7 Score=39.16 Aligned_cols=28 Identities=21% Similarity=0.493 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 002676 795 NERNERKKLEEELMEVNNKVAELTSETG 822 (894)
Q Consensus 795 ~~~~~~~~l~~~i~~l~~~i~~l~~~~~ 822 (894)
.|......+..++..++.++..|...|.
T Consensus 95 sw~~qk~~le~e~~~~~~r~~dL~~QN~ 122 (132)
T PF07926_consen 95 SWEEQKEQLEKELSELEQRIEDLNEQNK 122 (132)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566777888888888888887775
No 194
>PHA03096 p28-like protein; Provisional
Probab=95.58 E-value=0.0049 Score=62.45 Aligned_cols=44 Identities=20% Similarity=0.332 Sum_probs=31.3
Q ss_pred ccccccccccCC--------cccccCCCcccHhHHhHhhccCCC--CccCcCCC
Q 002676 840 LKCGVCFDRPKE--------VVITKCFHLFCNPCIQRNLEIRHR--KCPGCGTA 883 (894)
Q Consensus 840 l~C~iC~~~~~~--------~v~~~CgH~fC~~C~~~~~~~~~~--~CP~C~~~ 883 (894)
-.|+||++.... .++..|-|.||..|+..|-..+.. .||.|+..
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~~ 232 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRRL 232 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccch
Confidence 569999986532 345589999999999999765432 36666544
No 195
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.56 E-value=0.011 Score=43.87 Aligned_cols=49 Identities=24% Similarity=0.548 Sum_probs=34.9
Q ss_pred cccccccccc----CCcccccCCCcccHhHHhHhhccCCCCccCcCCCCCCCCccc
Q 002676 840 LKCGVCFDRP----KEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDVRF 891 (894)
Q Consensus 840 l~C~iC~~~~----~~~v~~~CgH~fC~~C~~~~~~~~~~~CP~C~~~~~~~d~~~ 891 (894)
-.|..|...+ .+..|-.=-|+||..|....+. ..||.||-.|....++|
T Consensus 6 PnCECCDrDLpp~s~dA~ICtfEcTFCadCae~~l~---g~CPnCGGelv~RP~RP 58 (84)
T COG3813 6 PNCECCDRDLPPDSTDARICTFECTFCADCAENRLH---GLCPNCGGELVARPIRP 58 (84)
T ss_pred CCCcccCCCCCCCCCceeEEEEeeehhHhHHHHhhc---CcCCCCCchhhcCcCCh
Confidence 4687776432 2233333458999999998866 57999999998877665
No 196
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.55 E-value=0.0061 Score=68.74 Aligned_cols=47 Identities=19% Similarity=0.534 Sum_probs=36.3
Q ss_pred ccccccccccc-------CCcccccCCCcccHhHHhHhhccCCC-CccCcCCCCC
Q 002676 839 ILKCGVCFDRP-------KEVVITKCFHLFCNPCIQRNLEIRHR-KCPGCGTAFG 885 (894)
Q Consensus 839 ~l~C~iC~~~~-------~~~v~~~CgH~fC~~C~~~~~~~~~~-~CP~C~~~~~ 885 (894)
.-.|+||.-.. .+..+-+|.|-|-..|+-+|+.+..+ .||.||..|.
T Consensus 1469 ~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1469 HEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred cchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 34899998543 33445579999999999999997555 6999997764
No 197
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=95.51 E-value=4.2 Score=43.22 Aligned_cols=89 Identities=18% Similarity=0.248 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhHhhhhhhHHhHHhhhhhHHHHHHHHHHHHHHHHHHHhH
Q 002676 469 EFRVMASALSKEMGMMEAQLNRWKE-TADEALSLREKAVSLKVSLSAKTNEQKRLTDKCVEQMAEIKSLKALIEKLQKDK 547 (894)
Q Consensus 469 el~~~~~~l~~~~~~l~~~~~~~~~-~~~~l~~l~~~~~~l~~~l~~~~~e~~~l~~~~~~~~~~l~~l~~~~~~l~~~~ 547 (894)
.+......+......++........ -..++..++.++......+...+..+..+..++..+...+..+......+...+
T Consensus 181 ~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI 260 (325)
T PF08317_consen 181 KLRERKAELEEELENLKQLVEEIESCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEI 260 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444333333221 125566666666666666666666677777777777777777777777777777
Q ss_pred HHHHHHHHHh
Q 002676 548 LESQIMLDMY 557 (894)
Q Consensus 548 ~~l~~~~~~~ 557 (894)
..++......
T Consensus 261 ~e~~~~~~~~ 270 (325)
T PF08317_consen 261 AEAEKIREEC 270 (325)
T ss_pred HHHHHHHHHh
Confidence 7776665433
No 198
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=95.49 E-value=0.0096 Score=42.51 Aligned_cols=41 Identities=20% Similarity=0.643 Sum_probs=32.4
Q ss_pred ccccccc--ccCCcccccCC-----CcccHhHHhHhhccC-CCCccCcC
Q 002676 841 KCGVCFD--RPKEVVITKCF-----HLFCNPCIQRNLEIR-HRKCPGCG 881 (894)
Q Consensus 841 ~C~iC~~--~~~~~v~~~Cg-----H~fC~~C~~~~~~~~-~~~CP~C~ 881 (894)
.|-||+. ...++.+.||. |.|=..|+..|+... ...||+|+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 4889997 44567888985 788899999999754 44699996
No 199
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=95.46 E-value=3.2 Score=41.66 Aligned_cols=6 Identities=17% Similarity=0.230 Sum_probs=2.1
Q ss_pred HHHHHH
Q 002676 754 TKWELA 759 (894)
Q Consensus 754 l~~~l~ 759 (894)
++.++.
T Consensus 233 LrQQLd 238 (305)
T PF14915_consen 233 LRQQLD 238 (305)
T ss_pred HHHHHH
Confidence 333333
No 200
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=95.45 E-value=0.022 Score=49.62 Aligned_cols=30 Identities=30% Similarity=0.561 Sum_probs=24.6
Q ss_pred ccccccccccccCCc--ccccCCCcccHhHHh
Q 002676 838 AILKCGVCFDRPKEV--VITKCFHLFCNPCIQ 867 (894)
Q Consensus 838 ~~l~C~iC~~~~~~~--v~~~CgH~fC~~C~~ 867 (894)
..-.|++|+.++.+. ++.||||+|...|++
T Consensus 77 ~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 77 ESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred CCCCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence 346799999998764 455999999999985
No 201
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=95.45 E-value=5.6 Score=44.31 Aligned_cols=22 Identities=23% Similarity=0.318 Sum_probs=9.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 002676 320 LQELKDSVEEAKILAADRLSEV 341 (894)
Q Consensus 320 ~~~le~~l~~~~~~~~~~~~el 341 (894)
++.+...+++.-..+.......
T Consensus 17 le~LQreLd~~~~~l~~~Q~~S 38 (629)
T KOG0963|consen 17 LERLQRELDAEATEIAQRQDES 38 (629)
T ss_pred HHHHHHHHHHHHHHHHhhhhhH
Confidence 4445555544444444443333
No 202
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=95.42 E-value=1.3 Score=43.66 Aligned_cols=28 Identities=21% Similarity=0.453 Sum_probs=22.2
Q ss_pred ccHhHHhHhhccCCCCccCcCCCCCCCCc
Q 002676 861 FCNPCIQRNLEIRHRKCPGCGTAFGQSDV 889 (894)
Q Consensus 861 fC~~C~~~~~~~~~~~CP~C~~~~~~~d~ 889 (894)
-|.+|-+..+. .-.-||.|.+.-...+.
T Consensus 196 ~C~sC~qqIHR-NAPiCPlCK~KsRSrnp 223 (230)
T PF10146_consen 196 TCQSCHQQIHR-NAPICPLCKAKSRSRNP 223 (230)
T ss_pred hhHhHHHHHhc-CCCCCcccccccccCCC
Confidence 49999999888 46789999987766543
No 203
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.37 E-value=0.0047 Score=62.48 Aligned_cols=44 Identities=34% Similarity=0.703 Sum_probs=35.5
Q ss_pred ccccccccccCC----cccccCCCcccHhHHhHhhcc-CCCCccCcCCC
Q 002676 840 LKCGVCFDRPKE----VVITKCFHLFCNPCIQRNLEI-RHRKCPGCGTA 883 (894)
Q Consensus 840 l~C~iC~~~~~~----~v~~~CgH~fC~~C~~~~~~~-~~~~CP~C~~~ 883 (894)
+.|..|++.+.- --.+||.|+|-..|+..++.. ..+.||.||+.
T Consensus 366 L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crkl 414 (518)
T KOG1941|consen 366 LYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRKL 414 (518)
T ss_pred hhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 889999987632 446799999999999998874 45679999943
No 204
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.27 E-value=0.0045 Score=63.36 Aligned_cols=42 Identities=29% Similarity=0.559 Sum_probs=34.1
Q ss_pred cccccCCCcccHhHHhHhhccCC-CCccCcCCCCCCCCccccc
Q 002676 852 VVITKCFHLFCNPCIQRNLEIRH-RKCPGCGTAFGQSDVRFVK 893 (894)
Q Consensus 852 ~v~~~CgH~fC~~C~~~~~~~~~-~~CP~C~~~~~~~d~~~~~ 893 (894)
.|++.|||.|...||.+|+.... ..||.|...-...++++.|
T Consensus 22 ~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~katkr~i~~e~ 64 (463)
T KOG1645|consen 22 IVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKATKRQIRPEY 64 (463)
T ss_pred EeeecccccccHHHHHHHHhhhhhhhCcccCChhHHHHHHHHH
Confidence 46779999999999999985211 1399999988888888776
No 205
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=95.20 E-value=3.5 Score=40.53 Aligned_cols=28 Identities=32% Similarity=0.554 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002676 786 TEDMRKELENERNERKKLEEELMEVNNK 813 (894)
Q Consensus 786 l~e~~~~l~~~~~~~~~l~~~i~~l~~~ 813 (894)
+.++...+...-.++++++.++..|..+
T Consensus 164 ~e~L~ekynkeveerkrle~e~k~lq~k 191 (307)
T PF10481_consen 164 YEELQEKYNKEVEERKRLEAEVKALQAK 191 (307)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHhcc
Confidence 3333334444445566777777777644
No 206
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=95.18 E-value=0.011 Score=42.42 Aligned_cols=44 Identities=32% Similarity=0.634 Sum_probs=22.5
Q ss_pred ccccccccccCCcccc-cCCCcccHhH---HhHhhccCCCCccCcCCC
Q 002676 840 LKCGVCFDRPKEVVIT-KCFHLFCNPC---IQRNLEIRHRKCPGCGTA 883 (894)
Q Consensus 840 l~C~iC~~~~~~~v~~-~CgH~fC~~C---~~~~~~~~~~~CP~C~~~ 883 (894)
+.||+.+.++..|+.. .|.|.-|++= +.....++.-+||+|+++
T Consensus 3 L~CPls~~~i~~P~Rg~~C~H~~CFDl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIRIPVRGKNCKHLQCFDLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-SSEEEETT--SS--EEHHHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEEeCccCCcCcccceECHHHHHHHhhccCCeECcCCcCc
Confidence 7899999999998766 8999988754 233333344469999875
No 207
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=95.11 E-value=4.8 Score=41.62 Aligned_cols=21 Identities=19% Similarity=0.257 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 002676 647 EAYIAEMETIGQAFEDMQTQN 667 (894)
Q Consensus 647 ~~l~~e~~~l~~~~~~~~~~~ 667 (894)
..+..++..+.+.+.+++..+
T Consensus 82 k~L~~Ev~~Lrqkl~E~qGD~ 102 (319)
T PF09789_consen 82 KKLKEEVEELRQKLNEAQGDI 102 (319)
T ss_pred HHHHHHHHHHHHHHHHHhchH
Confidence 333333333333333333333
No 208
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=95.10 E-value=0.01 Score=40.33 Aligned_cols=43 Identities=30% Similarity=0.784 Sum_probs=25.9
Q ss_pred ccccccccccCCcccccCC-CcccHhHHhHhhccCCCCccCcCCCCC
Q 002676 840 LKCGVCFDRPKEVVITKCF-HLFCNPCIQRNLEIRHRKCPGCGTAFG 885 (894)
Q Consensus 840 l~C~iC~~~~~~~v~~~Cg-H~fC~~C~~~~~~~~~~~CP~C~~~~~ 885 (894)
+.|..|- |.+..+.+|. |-.|..|+...+. ++..||+|+.+.-
T Consensus 3 ~nCKsCW--f~~k~Li~C~dHYLCl~CLt~ml~-~s~~C~iC~~~LP 46 (50)
T PF03854_consen 3 YNCKSCW--FANKGLIKCSDHYLCLNCLTLMLS-RSDRCPICGKPLP 46 (50)
T ss_dssp ----SS---S--SSEEE-SS-EEEHHHHHHT-S-SSSEETTTTEE--
T ss_pred ccChhhh--hcCCCeeeecchhHHHHHHHHHhc-cccCCCcccCcCc
Confidence 4576674 5556677898 6679999988877 6788999998764
No 209
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.10 E-value=4.1 Score=40.73 Aligned_cols=60 Identities=12% Similarity=0.307 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002676 608 QQRLSAAEAEIIELVAKLDASERDVMELEEAMKSKDREAEAYIAEMETIGQAFEDMQTQN 667 (894)
Q Consensus 608 ~~~i~~le~el~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~~~~~~~~~ 667 (894)
+..+..+..+...++.+++.+..++..+...+.....++.....++..+...+..+...+
T Consensus 37 ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I 96 (265)
T COG3883 37 DSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENI 96 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444444444444444444443333
No 210
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=94.91 E-value=7.2 Score=42.62 Aligned_cols=23 Identities=35% Similarity=0.359 Sum_probs=13.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Q 002676 429 SESRIERLEVQLQKSIIEKNDLG 451 (894)
Q Consensus 429 ~~~~~~~l~~~l~~~~~el~~l~ 451 (894)
.++++..+..++......+..+.
T Consensus 253 id~~~~~L~~~l~~~~~~l~~Le 275 (570)
T COG4477 253 IDSRLERLKEQLVENSELLTQLE 275 (570)
T ss_pred HHHHHHHHHHHHHHHHhHHHHhh
Confidence 35666666666665555555554
No 211
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=94.88 E-value=1.7 Score=42.65 Aligned_cols=54 Identities=13% Similarity=0.199 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 002676 765 LKWLKSAVTSSDKEYEQIQRKTEDMRKELENERNERKKLEEELMEVNNKVAELT 818 (894)
Q Consensus 765 l~~~~~~~~~~~~el~~~~~~l~e~~~~l~~~~~~~~~l~~~i~~l~~~i~~l~ 818 (894)
+..+.....++..++.-....+.-+...+......+..+..++..++..+++..
T Consensus 76 c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ 129 (307)
T PF10481_consen 76 CENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQ 129 (307)
T ss_pred HHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333334444444444455555555555554433
No 212
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=94.85 E-value=0.015 Score=57.32 Aligned_cols=60 Identities=17% Similarity=0.273 Sum_probs=47.7
Q ss_pred cccccccccccccccC---CcccccCCCcccHhHHhHhhccC--CCCccCcCCCCCCCCcccccC
Q 002676 835 DCKAILKCGVCFDRPK---EVVITKCFHLFCNPCIQRNLEIR--HRKCPGCGTAFGQSDVRFVKI 894 (894)
Q Consensus 835 ~l~~~l~C~iC~~~~~---~~v~~~CgH~fC~~C~~~~~~~~--~~~CP~C~~~~~~~d~~~~~~ 894 (894)
.+...+.|||-.+.-. -|+.+.|||+.-..-+.....++ ..+||-|-..-...++.+|||
T Consensus 332 hfHs~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP~~~~~~~~~rvrf 396 (396)
T COG5109 332 HFHSLFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCPEMSKYENILRVRF 396 (396)
T ss_pred cccceeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCCcchhhhhhhcccC
Confidence 4456689999655433 38999999999988888776643 457999999999999999987
No 213
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.77 E-value=0.017 Score=53.82 Aligned_cols=47 Identities=21% Similarity=0.509 Sum_probs=38.5
Q ss_pred ccccccccccc--CCcccccCCCcccHhHHhHhhcc-------CCCCccCcCCCCC
Q 002676 839 ILKCGVCFDRP--KEVVITKCFHLFCNPCIQRNLEI-------RHRKCPGCGTAFG 885 (894)
Q Consensus 839 ~l~C~iC~~~~--~~~v~~~CgH~fC~~C~~~~~~~-------~~~~CP~C~~~~~ 885 (894)
.-.|..|+... .+++.+.|+|+|--.|++.|... ++..||.|...+-
T Consensus 50 ~pNC~LC~t~La~gdt~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiF 105 (299)
T KOG3970|consen 50 NPNCRLCNTPLASGDTTRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIF 105 (299)
T ss_pred CCCCceeCCccccCcceeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccC
Confidence 35899999876 56888999999999999999663 4557999997764
No 214
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=94.75 E-value=12 Score=44.33 Aligned_cols=30 Identities=23% Similarity=0.244 Sum_probs=17.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002676 431 SRIERLEVQLQKSIIEKNDLGLKMEEAIQD 460 (894)
Q Consensus 431 ~~~~~l~~~l~~~~~el~~l~~~~~~~~~~ 460 (894)
.....++.++..+..++......+..+...
T Consensus 262 ~~r~~Le~ei~~le~e~~e~~~~l~~l~~~ 291 (650)
T TIGR03185 262 EEREQLERQLKEIEAARKANRAQLRELAAD 291 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 334566666666666666666555554433
No 215
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.68 E-value=0.013 Score=59.61 Aligned_cols=36 Identities=31% Similarity=0.672 Sum_probs=28.1
Q ss_pred cccCCCcccHhHHhHhhccC--CCCccCcCCCCCCCCc
Q 002676 854 ITKCFHLFCNPCIQRNLEIR--HRKCPGCGTAFGQSDV 889 (894)
Q Consensus 854 ~~~CgH~fC~~C~~~~~~~~--~~~CP~C~~~~~~~d~ 889 (894)
+-.|||+|--.|+..|+.+. +|.||+|+...+...|
T Consensus 23 i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~~~r~~ 60 (465)
T KOG0827|consen 23 IGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKLQERHV 60 (465)
T ss_pred ccchhhHHHHHHHHHHHccCCccCCCCceeecccceee
Confidence 44699999999999999863 3689999966655443
No 216
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=94.67 E-value=0.013 Score=57.62 Aligned_cols=42 Identities=24% Similarity=0.526 Sum_probs=30.1
Q ss_pred ccccccccccCC-cccccCCCcccHhHHhHhhccCCCCccCcCCCC
Q 002676 840 LKCGVCFDRPKE-VVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAF 884 (894)
Q Consensus 840 l~C~iC~~~~~~-~v~~~CgH~fC~~C~~~~~~~~~~~CP~C~~~~ 884 (894)
-.|--|.....- -..++|-|+||..|....- .+.||.|-..+
T Consensus 91 HfCd~Cd~PI~IYGRmIPCkHvFCl~CAr~~~---dK~Cp~C~d~V 133 (389)
T KOG2932|consen 91 HFCDRCDFPIAIYGRMIPCKHVFCLECARSDS---DKICPLCDDRV 133 (389)
T ss_pred EeecccCCcceeeecccccchhhhhhhhhcCc---cccCcCcccHH
Confidence 467778765544 2456999999999986542 35699998654
No 217
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=94.67 E-value=0.017 Score=56.61 Aligned_cols=49 Identities=24% Similarity=0.493 Sum_probs=36.8
Q ss_pred cccccccccccCC---cccccCCCcccHhHHhHhhcc---------------C-------CCCccCcCCCCCCC
Q 002676 839 ILKCGVCFDRPKE---VVITKCFHLFCNPCIQRNLEI---------------R-------HRKCPGCGTAFGQS 887 (894)
Q Consensus 839 ~l~C~iC~~~~~~---~v~~~CgH~fC~~C~~~~~~~---------------~-------~~~CP~C~~~~~~~ 887 (894)
...|.||+--|-+ -..|.|+|-|-+.|+.+++.- + .--||+||-.++..
T Consensus 115 ~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~e 188 (368)
T KOG4445|consen 115 NGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKIE 188 (368)
T ss_pred CCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcccc
Confidence 3589999988855 345699999999999888753 1 11299999888743
No 218
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.60 E-value=6.8 Score=40.86 Aligned_cols=32 Identities=19% Similarity=0.512 Sum_probs=23.7
Q ss_pred cccccccccCC----ccccc--CCCcccHhHHhHhhcc
Q 002676 841 KCGVCFDRPKE----VVITK--CFHLFCNPCIQRNLEI 872 (894)
Q Consensus 841 ~C~iC~~~~~~----~v~~~--CgH~fC~~C~~~~~~~ 872 (894)
.|..|--.|.. |-.++ |+.+||..|.+..+..
T Consensus 470 ~c~~~~aS~~slk~e~erl~qq~eqi~~~~~~Katvp~ 507 (542)
T KOG0993|consen 470 QCSNCDASFASLKVEPERLHQQCEQIFCMNCLKATVPS 507 (542)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHhHHHhhccc
Confidence 58888766644 43444 9999999999987664
No 219
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.51 E-value=0.012 Score=57.08 Aligned_cols=36 Identities=33% Similarity=0.779 Sum_probs=29.6
Q ss_pred CCCcccHhHHhHhhccCCC------------CccCcCCCCCCCCcccc
Q 002676 857 CFHLFCNPCIQRNLEIRHR------------KCPGCGTAFGQSDVRFV 892 (894)
Q Consensus 857 CgH~fC~~C~~~~~~~~~~------------~CP~C~~~~~~~d~~~~ 892 (894)
|.-++|.+|+-.|+-.|+. .||+||+.|...||+.|
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci~dv~~v 372 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCIRDVHCV 372 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEEeeeeEE
Confidence 6677899999999775432 49999999999998865
No 220
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=94.44 E-value=11 Score=42.69 Aligned_cols=10 Identities=20% Similarity=0.341 Sum_probs=5.4
Q ss_pred ccCcCCCCCC
Q 002676 877 CPGCGTAFGQ 886 (894)
Q Consensus 877 CP~C~~~~~~ 886 (894)
|+..+..|..
T Consensus 722 ~~~~~~~~~~ 731 (739)
T PF07111_consen 722 CQGDNQDSCS 731 (739)
T ss_pred ccccCcCCCC
Confidence 6665555543
No 221
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=94.22 E-value=0.11 Score=61.75 Aligned_cols=51 Identities=25% Similarity=0.502 Sum_probs=41.9
Q ss_pred hcccccccccccccccC-CcccccCCCcccHhHHhHhhccCCCCccCcCCCCC
Q 002676 834 KDCKAILKCGVCFDRPK-EVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFG 885 (894)
Q Consensus 834 ~~l~~~l~C~iC~~~~~-~~v~~~CgH~fC~~C~~~~~~~~~~~CP~C~~~~~ 885 (894)
.++-....|++|++... -..+..|||.||..|...|.. .+..||+|...++
T Consensus 1148 ~~~~~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~-~~s~~~~~ksi~~ 1199 (1394)
T KOG0298|consen 1148 MNLSGHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLY-ASSRCPICKSIKG 1199 (1394)
T ss_pred HHhhcccchHHHHHHHHhcCCeeeechhHhhhHHHHHHH-HhccCcchhhhhh
Confidence 33344469999999988 467889999999999999998 6788999986654
No 222
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=94.16 E-value=13 Score=42.27 Aligned_cols=68 Identities=18% Similarity=0.118 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhh
Q 002676 220 MKEEAKNLHEVMEIIHLKHKEYADQIENYISSHSVDQAEIQHLAGELEETMAELEESRRKLVSLKMQK 287 (894)
Q Consensus 220 l~~e~~~l~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~e~~~l~~~l~~~~~el~~~~~~l~~~~~~~ 287 (894)
....+..+......|...+..+..........+.....+.+.|..++.....+++.-...+..++.+.
T Consensus 160 Hq~~l~sL~~k~~~Le~~L~~le~~r~~e~~~La~~q~e~d~L~~qLsk~~~~le~q~tlv~~LR~Yv 227 (739)
T PF07111_consen 160 HQEALASLTSKAEELEKSLESLETRRAGEAKELAEAQREADLLREQLSKTQEELEAQVTLVEQLRKYV 227 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444433333344444455555666666666655555544455554333
No 223
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=94.15 E-value=5.5 Score=38.03 Aligned_cols=78 Identities=21% Similarity=0.278 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
Q 002676 739 RYNSEDRHLAVNLETTKWELADAEKELKWLKSAVTSSDKEYEQIQRKTEDM-----RKELENERNERKKLEEELMEVNNK 813 (894)
Q Consensus 739 ~l~~e~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~el~~~~~~l~e~-----~~~l~~~~~~~~~l~~~i~~l~~~ 813 (894)
.+..+...+...+......+..+...+...+.....+......+..+...+ -.++.........++..+..|+.+
T Consensus 88 ~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~~~~~~P~ll~Dy~~~~~~~~~l~~~i~~l~rk 167 (177)
T PF13870_consen 88 FLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQGGLLGVPALLRDYDKTKEEVEELRKEIKELERK 167 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333344444444444444444444444444443333322221 112333333444455555555555
Q ss_pred hhh
Q 002676 814 VAE 816 (894)
Q Consensus 814 i~~ 816 (894)
+..
T Consensus 168 ~~~ 170 (177)
T PF13870_consen 168 VEI 170 (177)
T ss_pred HHH
Confidence 443
No 224
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=93.95 E-value=11 Score=42.93 Aligned_cols=28 Identities=11% Similarity=0.153 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHhc
Q 002676 531 AEIKSLKALIEKLQKDKLESQIMLDMYG 558 (894)
Q Consensus 531 ~~l~~l~~~~~~l~~~~~~l~~~~~~~~ 558 (894)
.....+..++..++.++...+..+..|.
T Consensus 161 ~~~~fl~~ql~~~~~~L~~ae~~l~~f~ 188 (498)
T TIGR03007 161 SAQRFIDEQIKTYEKKLEAAENRLKAFK 188 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667777777777777776666654
No 225
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=93.94 E-value=4 Score=35.65 Aligned_cols=95 Identities=12% Similarity=0.136 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHchhcchhhHHHHHHHHHHHHHHHHHHHHHH
Q 002676 374 YNLVNDQLQHWNVEVERYKALTDSLLIDRSLVLRREKEINVRAESADAARNTVDDSESRIERLEVQLQKSIIEKNDLGLK 453 (894)
Q Consensus 374 ~~~l~~~l~~l~~el~~~~~~~~~l~~e~~~l~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~l~~~l~~~~~el~~l~~~ 453 (894)
+..+...+..+..++..++.++..+...++.+..++..+.... ..+......+..+..++..+...
T Consensus 18 ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~--------------e~~~~~~~~~~~L~~el~~l~~r 83 (120)
T PF12325_consen 18 VERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEEN--------------EELRALKKEVEELEQELEELQQR 83 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566667777777777777777777777777777766654332 22233334444445555555544
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHHHHHHHHH
Q 002676 454 MEEAIQDSGRKDIKAEFRVMASALSKEMGMM 484 (894)
Q Consensus 454 ~~~~~~~~~~~~~~~el~~~~~~l~~~~~~l 484 (894)
+..+..-.+ +-..++..+...+......+
T Consensus 84 y~t~LellG--EK~E~veEL~~Dv~DlK~my 112 (120)
T PF12325_consen 84 YQTLLELLG--EKSEEVEELRADVQDLKEMY 112 (120)
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHHHHHH
Confidence 444444444 33333333333333333333
No 226
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=93.85 E-value=18 Score=42.84 Aligned_cols=26 Identities=19% Similarity=0.179 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHH
Q 002676 529 QMAEIKSLKALIEKLQKDKLESQIML 554 (894)
Q Consensus 529 ~~~~l~~l~~~~~~l~~~~~~l~~~~ 554 (894)
+...+..++..++.+...+..+...+
T Consensus 228 l~~~i~~l~~ele~a~~~l~~l~~~~ 253 (650)
T TIGR03185 228 LAQEIAHLRNELEEAQRSLESLEKKF 253 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444433
No 227
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=93.81 E-value=11 Score=40.14 Aligned_cols=14 Identities=7% Similarity=0.425 Sum_probs=6.6
Q ss_pred HHHHHHHHHHhccc
Q 002676 824 AAIQKLQDEIKDCK 837 (894)
Q Consensus 824 ~~~~~L~ee~~~l~ 837 (894)
..+..|+..+..+.
T Consensus 276 ~Ev~~Lk~~~~~Le 289 (325)
T PF08317_consen 276 SEVKRLKAKVDALE 289 (325)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444555544443
No 228
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=93.78 E-value=0.047 Score=41.85 Aligned_cols=47 Identities=26% Similarity=0.627 Sum_probs=21.9
Q ss_pred ccccccccccCC-------cccccCCCcccHhHHhHhhccCCCCccCcCCCCCC
Q 002676 840 LKCGVCFDRPKE-------VVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQ 886 (894)
Q Consensus 840 l~C~iC~~~~~~-------~v~~~CgH~fC~~C~~~~~~~~~~~CP~C~~~~~~ 886 (894)
-.|.||++...- +...-|+-..|..|..--.+.....||.|+++|..
T Consensus 10 qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~ykr 63 (80)
T PF14569_consen 10 QICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYKR 63 (80)
T ss_dssp -B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B---
T ss_pred cccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCccc
Confidence 579999986532 22336777789999998888778889999999864
No 229
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.67 E-value=0.041 Score=52.29 Aligned_cols=37 Identities=22% Similarity=0.191 Sum_probs=31.7
Q ss_pred cccccccccccccccCCcccccCCCcccHhHHhHhhc
Q 002676 835 DCKAILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLE 871 (894)
Q Consensus 835 ~l~~~l~C~iC~~~~~~~v~~~CgH~fC~~C~~~~~~ 871 (894)
.++.--.|+.|+.++.+||+++=||+||..||-.++-
T Consensus 39 siK~FdcCsLtLqPc~dPvit~~GylfdrEaILe~il 75 (303)
T KOG3039|consen 39 SIKPFDCCSLTLQPCRDPVITPDGYLFDREAILEYIL 75 (303)
T ss_pred ccCCcceeeeecccccCCccCCCCeeeeHHHHHHHHH
Confidence 3444468999999999999999999999999988754
No 230
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=93.61 E-value=0.02 Score=49.76 Aligned_cols=33 Identities=33% Similarity=0.706 Sum_probs=27.0
Q ss_pred cccccccccccCC---cccccCC------CcccHhHHhHhhc
Q 002676 839 ILKCGVCFDRPKE---VVITKCF------HLFCNPCIQRNLE 871 (894)
Q Consensus 839 ~l~C~iC~~~~~~---~v~~~Cg------H~fC~~C~~~~~~ 871 (894)
.+.|.||+++..+ +|.++|| |+||..|+.+|-.
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~ 67 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRR 67 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHh
Confidence 5789999988755 6777888 5699999999943
No 231
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=93.61 E-value=9.2 Score=46.33 Aligned_cols=25 Identities=20% Similarity=0.243 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHH
Q 002676 612 SAAEAEIIELVAKLDASERDVMELE 636 (894)
Q Consensus 612 ~~le~el~~l~~~~~~~~~~~~~l~ 636 (894)
.-+..++..++.++...+..+..++
T Consensus 197 ~~L~~ql~~l~~~l~~aE~~l~~fk 221 (754)
T TIGR01005 197 DFLAPEIADLSKQSRDAEAEVAAYR 221 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444443
No 232
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=93.49 E-value=4.8 Score=35.14 Aligned_cols=45 Identities=24% Similarity=0.372 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 002676 651 AEMETIGQAFEDMQTQNQHLLQQVAERDDLNIKLVSESVKTKQVQ 695 (894)
Q Consensus 651 ~e~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~e~~~~~~~~ 695 (894)
..+..+...+.+++.....+..-+.+....+..+..++..++.-|
T Consensus 68 ~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK~my 112 (120)
T PF12325_consen 68 KEVEELEQELEELQQRYQTLLELLGEKSEEVEELRADVQDLKEMY 112 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444455555555555554444443
No 233
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=93.42 E-value=21 Score=42.25 Aligned_cols=49 Identities=18% Similarity=0.141 Sum_probs=37.5
Q ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002676 314 ADGRMDLQELKDSVEEAKILAADRLSEVEEAQQDNINLSKQLENLQNEL 362 (894)
Q Consensus 314 ~~~~~~~~~le~~l~~~~~~~~~~~~el~~l~~~~~~l~~~~~~l~~~l 362 (894)
..+..++..++.+...++..+..+..+|+..+.-+.+....+..++..+
T Consensus 261 ~~l~~~l~~~eeEnk~Lke~l~~k~~ELq~sr~~~a~ta~kL~~~e~ql 309 (769)
T PF05911_consen 261 EFLTERLQAMEEENKMLKEALAKKNSELQFSRNMYAKTASKLSQLEAQL 309 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556677777788888888888888888888877777777777777
No 234
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=93.29 E-value=9.2 Score=41.35 Aligned_cols=96 Identities=18% Similarity=0.228 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002676 649 YIAEMETIGQAFEDMQTQNQHLLQQVAERDDLNIKLVSESVKTKQVQSFLLSEKQALARQLQQINALVESAKLRILHAEE 728 (894)
Q Consensus 649 l~~e~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~e~~~~~~~~~~l~~e~~~l~~~l~~l~~~~~~~~~~~~~l~~ 728 (894)
+..++.....+...+++.+..+..++....+.+.++...+..++.++..+.-++..+..-+......-+.+.....++++
T Consensus 203 ~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleD 282 (596)
T KOG4360|consen 203 CVKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELED 282 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 34444444444444455555555555555555555555555555555555555554444444433333334444444444
Q ss_pred HHHHHHHHHHHHHHHH
Q 002676 729 QMKACLTEALRYNSED 744 (894)
Q Consensus 729 ~l~~~~~~~~~l~~e~ 744 (894)
+..++...+...++++
T Consensus 283 kyAE~m~~~~EaeeEL 298 (596)
T KOG4360|consen 283 KYAECMQMLHEAEEEL 298 (596)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444444433
No 235
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.27 E-value=0.26 Score=51.86 Aligned_cols=44 Identities=27% Similarity=0.461 Sum_probs=35.7
Q ss_pred ccccccccccCC------ccccc--------CCCcccHhHHhHhhccCCCCccCcCCC
Q 002676 840 LKCGVCFDRPKE------VVITK--------CFHLFCNPCIQRNLEIRHRKCPGCGTA 883 (894)
Q Consensus 840 l~C~iC~~~~~~------~v~~~--------CgH~fC~~C~~~~~~~~~~~CP~C~~~ 883 (894)
..|.||...|.. |.++. |||+.|..|+...+.....+||+|+.+
T Consensus 208 ~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~~~~cp~~~~~ 265 (296)
T KOG4185|consen 208 KLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQAGIKCPFCTWS 265 (296)
T ss_pred HHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHhhhcCCcccce
Confidence 458889877752 55555 999999999999988767899999974
No 236
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.22 E-value=0.25 Score=50.62 Aligned_cols=45 Identities=22% Similarity=0.542 Sum_probs=37.4
Q ss_pred cccccccccCC----cccccCCCcccHhHHhHhhccCCCCccCcCCCCCC
Q 002676 841 KCGVCFDRPKE----VVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQ 886 (894)
Q Consensus 841 ~C~iC~~~~~~----~v~~~CgH~fC~~C~~~~~~~~~~~CP~C~~~~~~ 886 (894)
.|.||+..++. .--+.|||.+-+.|+..|+.+ .++||.|+..+..
T Consensus 198 sl~I~~~slK~~y~k~~~~~~g~~~~~~kL~k~L~~-~~kl~~~~rel~~ 246 (465)
T KOG0827|consen 198 SLSICFESLKQNYDKISAIVCGHIYHHGKLSKWLAT-KRKLPSCRRELPK 246 (465)
T ss_pred hhHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHH-HHHhHHHHhhhhh
Confidence 59999987765 345689999999999999997 6899999976654
No 237
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=93.13 E-value=24 Score=42.83 Aligned_cols=22 Identities=9% Similarity=0.054 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 002676 607 CQQRLSAAEAEIIELVAKLDAS 628 (894)
Q Consensus 607 l~~~i~~le~el~~l~~~~~~~ 628 (894)
+..++..++.++.....++...
T Consensus 199 L~~ql~~l~~~l~~aE~~l~~f 220 (754)
T TIGR01005 199 LAPEIADLSKQSRDAEAEVAAY 220 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444333333
No 238
>PRK11281 hypothetical protein; Provisional
Probab=92.74 E-value=33 Score=42.71 Aligned_cols=29 Identities=10% Similarity=0.099 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 002676 675 AERDDLNIKLVSESVKTKQVQSFLLSEKQ 703 (894)
Q Consensus 675 ~~~~~~~~~l~~e~~~~~~~~~~l~~e~~ 703 (894)
......+..+..+....++.+..+.....
T Consensus 295 ~~~t~~~~~l~~~~~~~~~~l~~~~q~~~ 323 (1113)
T PRK11281 295 LKATEKLNTLTQQNLRVKNWLDRLTQSER 323 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333
No 239
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=92.73 E-value=0.093 Score=37.34 Aligned_cols=39 Identities=31% Similarity=0.571 Sum_probs=21.6
Q ss_pred ccccccccCCc----------ccccCCCcccHhHHhHhhccCCCCccCcC
Q 002676 842 CGVCFDRPKEV----------VITKCFHLFCNPCIQRNLEIRHRKCPGCG 881 (894)
Q Consensus 842 C~iC~~~~~~~----------v~~~CgH~fC~~C~~~~~~~~~~~CP~C~ 881 (894)
|--|...|..+ ..-.|++.||.+|=--..+ .-..||.|.
T Consensus 2 CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHE-~LH~CPGC~ 50 (51)
T PF07975_consen 2 CFGCQKPFPDGPEKKADSSRYRCPKCKNHFCIDCDVFIHE-TLHNCPGCE 50 (51)
T ss_dssp ETTTTEE-TTS-------EEE--TTTT--B-HHHHHTTTT-TS-SSSTT-
T ss_pred CccCCCCCCCcccccccCCeEECCCCCCccccCcChhhhc-cccCCcCCC
Confidence 55566666553 1227999999999544444 567899995
No 240
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=92.59 E-value=1.6 Score=42.41 Aligned_cols=38 Identities=16% Similarity=0.101 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 002676 732 ACLTEALRYNSEDRHLAVNLETTKWELADAEKELKWLK 769 (894)
Q Consensus 732 ~~~~~~~~l~~e~~~~~~~~~~l~~~l~~l~~~l~~~~ 769 (894)
.+...+..+...+..+...+......+..+..++..+.
T Consensus 120 ~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~ 157 (194)
T PF08614_consen 120 ELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQ 157 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333
No 241
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.47 E-value=17 Score=38.76 Aligned_cols=41 Identities=20% Similarity=0.096 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 002676 669 HLLQQVAERDDLNIKLVSESVKTKQVQSFLLSEKQALARQL 709 (894)
Q Consensus 669 ~l~~~l~~~~~~~~~l~~e~~~~~~~~~~l~~e~~~l~~~l 709 (894)
.+...+.++...+.+...++.++..+-..++.+.......+
T Consensus 386 ~ytqrikEi~gniRKq~~DI~Kil~etreLqkq~ns~se~L 426 (521)
T KOG1937|consen 386 VYTQRIKEIDGNIRKQEQDIVKILEETRELQKQENSESEAL 426 (521)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555566666565555555555555555444444
No 242
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=92.46 E-value=28 Score=41.20 Aligned_cols=36 Identities=19% Similarity=0.255 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002676 470 FRVMASALSKEMGMMEAQLNRWKETADEALSLREKA 505 (894)
Q Consensus 470 l~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~l~~~~ 505 (894)
.+.+...|.....+++.-...|......+..+..++
T Consensus 274 nk~Lke~l~~k~~ELq~sr~~~a~ta~kL~~~e~ql 309 (769)
T PF05911_consen 274 NKMLKEALAKKNSELQFSRNMYAKTASKLSQLEAQL 309 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444455444445555556666666665
No 243
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=92.31 E-value=22 Score=39.59 Aligned_cols=12 Identities=8% Similarity=0.039 Sum_probs=8.2
Q ss_pred CccCcCCCCCCC
Q 002676 876 KCPGCGTAFGQS 887 (894)
Q Consensus 876 ~CP~C~~~~~~~ 887 (894)
.||.-..+|+.-
T Consensus 389 ~~~~~~qpf~~l 400 (861)
T KOG1899|consen 389 NNITSAQPFSPL 400 (861)
T ss_pred cccccCCcCCCC
Confidence 377777777653
No 244
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=92.27 E-value=0.042 Score=56.38 Aligned_cols=44 Identities=20% Similarity=0.372 Sum_probs=31.8
Q ss_pred cccccccccccCCcccc----cCC--CcccHhHHhHhhccCCCCccCcCCC
Q 002676 839 ILKCGVCFDRPKEVVIT----KCF--HLFCNPCIQRNLEIRHRKCPGCGTA 883 (894)
Q Consensus 839 ~l~C~iC~~~~~~~v~~----~Cg--H~fC~~C~~~~~~~~~~~CP~C~~~ 883 (894)
.-.||||+..+.-.++. .=| |.+|.-|-..|.- ...+||.|+..
T Consensus 184 ~~~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~teW~~-~R~~C~~Cg~~ 233 (305)
T TIGR01562 184 RTLCPACGSPPVASMVRQGGKETGLRYLSCSLCATEWHY-VRVKCSHCEES 233 (305)
T ss_pred CCcCCCCCChhhhhhhcccCCCCCceEEEcCCCCCcccc-cCccCCCCCCC
Confidence 35899999877554433 235 4569999988866 45679999974
No 245
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=92.15 E-value=0.22 Score=35.54 Aligned_cols=47 Identities=23% Similarity=0.531 Sum_probs=32.8
Q ss_pred ccccccccccC--CcccccCC--CcccHhHHhHhhccCCCCccCcCCCCCCCCc
Q 002676 840 LKCGVCFDRPK--EVVITKCF--HLFCNPCIQRNLEIRHRKCPGCGTAFGQSDV 889 (894)
Q Consensus 840 l~C~iC~~~~~--~~v~~~Cg--H~fC~~C~~~~~~~~~~~CP~C~~~~~~~d~ 889 (894)
-.|..|...+. .+-..-|. -+||..|....+. ..||.||-.|....+
T Consensus 6 pnCE~C~~dLp~~s~~A~ICSfECTFC~~C~e~~l~---~~CPNCgGelv~RP~ 56 (57)
T PF06906_consen 6 PNCECCDKDLPPDSPEAYICSFECTFCADCAETMLN---GVCPNCGGELVRRPR 56 (57)
T ss_pred CCccccCCCCCCCCCcceEEeEeCcccHHHHHHHhc---CcCcCCCCccccCCC
Confidence 56888886542 22233344 4799999999865 469999999977543
No 246
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=92.12 E-value=14 Score=39.43 Aligned_cols=12 Identities=17% Similarity=0.382 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHH
Q 002676 777 KEYEQIQRKTED 788 (894)
Q Consensus 777 ~el~~~~~~l~e 788 (894)
..+..+++++.+
T Consensus 435 ~~I~dLqEQlrD 446 (493)
T KOG0804|consen 435 EKITDLQEQLRD 446 (493)
T ss_pred HHHHHHHHHHHh
Confidence 333344444433
No 247
>COG4647 AcxC Acetone carboxylase, gamma subunit [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=91.95 E-value=0.06 Score=45.34 Aligned_cols=22 Identities=27% Similarity=0.489 Sum_probs=17.6
Q ss_pred ccccccCCcccccCCCcccHhH
Q 002676 844 VCFDRPKEVVITKCFHLFCNPC 865 (894)
Q Consensus 844 iC~~~~~~~v~~~CgH~fC~~C 865 (894)
||...-+.++...|||.||..-
T Consensus 62 i~qs~~~rv~rcecghsf~d~r 83 (165)
T COG4647 62 ICQSAQKRVIRCECGHSFGDYR 83 (165)
T ss_pred EEecccccEEEEeccccccChh
Confidence 5777777777779999999864
No 248
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=91.92 E-value=12 Score=35.78 Aligned_cols=35 Identities=14% Similarity=0.326 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHH
Q 002676 611 LSAAEAEIIELVAKLDASERDVMELEEAMKSKDRE 645 (894)
Q Consensus 611 i~~le~el~~l~~~~~~~~~~~~~l~~~l~~~~~~ 645 (894)
|.-|..++.+.+.++...-.+|-.|...+......
T Consensus 12 IsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~ 46 (202)
T PF06818_consen 12 ISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAE 46 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 33333344444444443333333333333333333
No 249
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=91.85 E-value=25 Score=39.21 Aligned_cols=19 Identities=16% Similarity=0.326 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 002676 797 RNERKKLEEELMEVNNKVA 815 (894)
Q Consensus 797 ~~~~~~l~~~i~~l~~~i~ 815 (894)
...+..++..+..++..+.
T Consensus 252 ~~~l~~~~~~l~~~~~~l~ 270 (423)
T TIGR01843 252 QARLAELRERLNKARDRLQ 270 (423)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3334444444444444443
No 250
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.82 E-value=0.082 Score=56.95 Aligned_cols=50 Identities=30% Similarity=0.848 Sum_probs=34.3
Q ss_pred cccccccccccCC----cccccCCCcccHhHHhHhhccC-----CCCccC--cCCCCCCCC
Q 002676 839 ILKCGVCFDRPKE----VVITKCFHLFCNPCIQRNLEIR-----HRKCPG--CGTAFGQSD 888 (894)
Q Consensus 839 ~l~C~iC~~~~~~----~v~~~CgH~fC~~C~~~~~~~~-----~~~CP~--C~~~~~~~d 888 (894)
...|+||+..+.. -.+..|||.||..|+...+..+ ...||- |...+...+
T Consensus 146 ~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~~~~~~~~~C~~~~C~~~l~~~~ 206 (384)
T KOG1812|consen 146 KEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVKLLSGTVIRCPHDGCESRLTLES 206 (384)
T ss_pred cccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhhhccCCCccCCCCCCCccCCHHH
Confidence 4689999943332 2356899999999999998854 224765 666555443
No 251
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=91.77 E-value=4.5 Score=42.48 Aligned_cols=87 Identities=25% Similarity=0.272 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002676 727 EEQMKACLTEALRYNSEDRHLAVNLETTKWELADAEKELKWLKSAVTSSDKEYEQIQRKTEDMRKELENERNERKKLEEE 806 (894)
Q Consensus 727 ~~~l~~~~~~~~~l~~e~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~el~~~~~~l~e~~~~l~~~~~~~~~l~~~ 806 (894)
...+..+..+...+..++..++.+...+..++..++.+...+.......-.....+. .++.....+...+...
T Consensus 49 ~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~-------~~l~~~~~e~~sl~~q 121 (314)
T PF04111_consen 49 EEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQ-------LELIEFQEERDSLKNQ 121 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 333333434444444444444444444444444444444433333333333333333 3333333344444444
Q ss_pred HHHHHHHhhhhhhh
Q 002676 807 LMEVNNKVAELTSE 820 (894)
Q Consensus 807 i~~l~~~i~~l~~~ 820 (894)
+......+++|...
T Consensus 122 ~~~~~~~L~~L~kt 135 (314)
T PF04111_consen 122 YEYASNQLDRLRKT 135 (314)
T ss_dssp HHHHHHHHHCHHT-
T ss_pred HHHHHHHHHHHHhc
Confidence 44444455454443
No 252
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=91.70 E-value=16 Score=39.08 Aligned_cols=42 Identities=17% Similarity=0.208 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002676 646 AEAYIAEMETIGQAFEDMQTQNQHLLQQVAERDDLNIKLVSE 687 (894)
Q Consensus 646 ~~~l~~e~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~e 687 (894)
.+.+..+...+.....++......+...+..++..+.++..+
T Consensus 356 ~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~ke 397 (493)
T KOG0804|consen 356 YELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKE 397 (493)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333443334444444444444444444444444333
No 253
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=91.69 E-value=0.065 Score=59.65 Aligned_cols=47 Identities=17% Similarity=0.246 Sum_probs=32.6
Q ss_pred ccccccccccCC----cccc---cCCCcccHhHHhHhhcc----C-CCCccCcCCCCCC
Q 002676 840 LKCGVCFDRPKE----VVIT---KCFHLFCNPCIQRNLEI----R-HRKCPGCGTAFGQ 886 (894)
Q Consensus 840 l~C~iC~~~~~~----~v~~---~CgH~fC~~C~~~~~~~----~-~~~CP~C~~~~~~ 886 (894)
.+|++|-..+.+ --+. .|+|.||..||..|... + .-.||+|..+|+.
T Consensus 97 ~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~s 155 (1134)
T KOG0825|consen 97 DTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECVGS 155 (1134)
T ss_pred cccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHhhh
Confidence 466666655554 2233 59999999999999762 1 1138999988863
No 254
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=91.64 E-value=30 Score=39.82 Aligned_cols=33 Identities=30% Similarity=0.410 Sum_probs=22.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 002676 597 VKAANEAEAACQQRLSAAEAEIIELVAKLDASE 629 (894)
Q Consensus 597 ~~~~~~~~~~l~~~i~~le~el~~l~~~~~~~~ 629 (894)
++.+....+.+...|..+++++..|-..+....
T Consensus 56 ve~a~~~~~~L~~~ia~~eael~~l~s~l~~~~ 88 (660)
T KOG4302|consen 56 VEEASESKARLLQEIAVIEAELNDLCSALGEPS 88 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 555566666777777777777777776655443
No 255
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.60 E-value=0.12 Score=57.39 Aligned_cols=55 Identities=33% Similarity=0.774 Sum_probs=42.6
Q ss_pred cccccccccccccCC-cccccCCCcccHhHHhHhhccC----C---CCcc--CcCCCCCCCCccc
Q 002676 837 KAILKCGVCFDRPKE-VVITKCFHLFCNPCIQRNLEIR----H---RKCP--GCGTAFGQSDVRF 891 (894)
Q Consensus 837 ~~~l~C~iC~~~~~~-~v~~~CgH~fC~~C~~~~~~~~----~---~~CP--~C~~~~~~~d~~~ 891 (894)
.....|.||...+.. .+...|||.||..|...++.++ . .+|| .|....+..+|..
T Consensus 68 ~~~~~c~ic~~~~~~~~~~~~c~H~~c~~cw~~yl~~kI~~~~~~~i~cp~~~C~a~v~~~~i~~ 132 (444)
T KOG1815|consen 68 KGDVQCGICVESYDGEIIGLGCGHPFCPPCWTGYLGTKIHEGEEAKIKCPAHGCPALVGEDTVEK 132 (444)
T ss_pred CccccCCcccCCCcchhhhcCCCcHHHHHHHHHHhhheeeccccccccCCCCCccccCCCceeee
Confidence 455899999999886 7777999999999999988752 1 2465 4888887776643
No 256
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=91.58 E-value=13 Score=35.48 Aligned_cols=78 Identities=27% Similarity=0.330 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 002676 615 EAEIIELVAKLDASERDVMELEEAMKSKDREAEAYIAEMETIGQAFEDMQTQNQHLLQQVAERDDLNIKLVSESVKTKQV 694 (894)
Q Consensus 615 e~el~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~e~~~~~~~ 694 (894)
..++..++-....+...+..+...+...+.--+.+. -..|..++-++..+...|.+....+..+.......-..
T Consensus 5 ~~~i~~~Rl~~~~lk~~l~k~~~ql~~ke~lge~L~------~iDFeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~ 78 (177)
T PF13870_consen 5 RNEISKLRLKNITLKHQLAKLEEQLRQKEELGEGLH------LIDFEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQI 78 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555444444444332222111 12455555555655555555555555554444333333
Q ss_pred HHHH
Q 002676 695 QSFL 698 (894)
Q Consensus 695 ~~~l 698 (894)
+..+
T Consensus 79 L~h~ 82 (177)
T PF13870_consen 79 LTHV 82 (177)
T ss_pred HHHH
Confidence 3333
No 257
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=91.57 E-value=4.9 Score=42.27 Aligned_cols=11 Identities=0% Similarity=-0.273 Sum_probs=3.6
Q ss_pred cCCcccccCCC
Q 002676 849 PKEVVITKCFH 859 (894)
Q Consensus 849 ~~~~v~~~CgH 859 (894)
|....+.|||+
T Consensus 193 f~~y~l~P~Gs 203 (314)
T PF04111_consen 193 FQRYRLVPMGS 203 (314)
T ss_dssp -SSEEEE--GG
T ss_pred cccceeEecCC
Confidence 33444445544
No 258
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=91.55 E-value=14 Score=35.90 Aligned_cols=7 Identities=43% Similarity=0.548 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 002676 616 AEIIELV 622 (894)
Q Consensus 616 ~el~~l~ 622 (894)
.++.+++
T Consensus 34 eei~emk 40 (201)
T PF13851_consen 34 EEIAEMK 40 (201)
T ss_pred HHHHHHH
Confidence 3333333
No 259
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=91.21 E-value=0.082 Score=39.47 Aligned_cols=33 Identities=18% Similarity=0.422 Sum_probs=25.7
Q ss_pred ccccccccccCC----cccccCCCcccHhHHhHhhcc
Q 002676 840 LKCGVCFDRPKE----VVITKCFHLFCNPCIQRNLEI 872 (894)
Q Consensus 840 l~C~iC~~~~~~----~v~~~CgH~fC~~C~~~~~~~ 872 (894)
..|++|...|.- .....||++||..|.......
T Consensus 3 ~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~~~ 39 (57)
T cd00065 3 SSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRIPL 39 (57)
T ss_pred CcCcccCccccCCccccccCcCcCCcChHHcCCeeec
Confidence 468999887743 455689999999999877653
No 260
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=91.20 E-value=48 Score=41.27 Aligned_cols=43 Identities=14% Similarity=0.074 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 002676 667 NQHLLQQVAERDDLNIKLVSESVKTKQVQSFLLSEKQALARQL 709 (894)
Q Consensus 667 ~~~l~~~l~~~~~~~~~l~~e~~~~~~~~~~l~~e~~~l~~~l 709 (894)
+..+-..+......+..+..+....++.+..+......++.++
T Consensus 267 N~~Ls~~L~~~t~~~n~l~~~~~~~~~~l~~~~q~~~~i~eQi 309 (1109)
T PRK10929 267 NRELSQALNQQAQRMDLIASQQRQAASQTLQVRQALNTLREQS 309 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444455555555444555544444444444444
No 261
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=91.12 E-value=0.11 Score=61.47 Aligned_cols=46 Identities=30% Similarity=0.674 Sum_probs=34.6
Q ss_pred cccccccccc-CC--cccccCCCcccHhHHhHhhccCCC---------CccCcCCCCC
Q 002676 840 LKCGVCFDRP-KE--VVITKCFHLFCNPCIQRNLEIRHR---------KCPGCGTAFG 885 (894)
Q Consensus 840 l~C~iC~~~~-~~--~v~~~CgH~fC~~C~~~~~~~~~~---------~CP~C~~~~~ 885 (894)
--|.||+..- .. .+.+.|||+|-..|+...+++||. .||+|..++-
T Consensus 3487 DmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~In 3544 (3738)
T KOG1428|consen 3487 DMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKIN 3544 (3738)
T ss_pred ceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhh
Confidence 3577777432 22 456799999999999999887653 4999998774
No 262
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=91.04 E-value=25 Score=37.72 Aligned_cols=21 Identities=24% Similarity=0.267 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHH
Q 002676 531 AEIKSLKALIEKLQKDKLESQ 551 (894)
Q Consensus 531 ~~l~~l~~~~~~l~~~~~~l~ 551 (894)
..+..|+.+++..+.++..|+
T Consensus 330 g~l~kl~~eie~kEeei~~L~ 350 (622)
T COG5185 330 GKLEKLKSEIELKEEEIKALQ 350 (622)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444333
No 263
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=90.96 E-value=21 Score=40.51 Aligned_cols=40 Identities=23% Similarity=0.434 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002676 772 VTSSDKEYEQIQRKTEDMRKELENERNERKKLEEELMEVN 811 (894)
Q Consensus 772 ~~~~~~el~~~~~~l~e~~~~l~~~~~~~~~l~~~i~~l~ 811 (894)
...+..+++....++.++...-+.....+..+..+++.|+
T Consensus 218 kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~ 257 (916)
T KOG0249|consen 218 KNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLR 257 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 4455555555555555554444444444445555555444
No 264
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=90.71 E-value=0.067 Score=31.11 Aligned_cols=23 Identities=30% Similarity=0.866 Sum_probs=14.1
Q ss_pred ccHhHHhHhhccCCCCccCcCCCC
Q 002676 861 FCNPCIQRNLEIRHRKCPGCGTAF 884 (894)
Q Consensus 861 fC~~C~~~~~~~~~~~CP~C~~~~ 884 (894)
||..|-...-. ..+.||.||.+|
T Consensus 1 ~Cp~CG~~~~~-~~~fC~~CG~~l 23 (23)
T PF13240_consen 1 YCPNCGAEIED-DAKFCPNCGTPL 23 (23)
T ss_pred CCcccCCCCCC-cCcchhhhCCcC
Confidence 45555555543 456688888765
No 265
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=90.52 E-value=23 Score=36.39 Aligned_cols=59 Identities=22% Similarity=0.244 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHhccCCCCcccH----------HHHHHHHHHHHHHHHHHHHhhh
Q 002676 531 AEIKSLKALIEKLQKDKLESQIMLDMYGQEGRDPRDL----------MEIKESERRAHSQAEVLKNALD 589 (894)
Q Consensus 531 ~~l~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~i----------~~l~~~~~~~~~~~~~l~~~l~ 589 (894)
.-++.|...++.+......|+..++.--.....++++ ..+...+..+..+|..|...|.
T Consensus 178 ~lvN~L~Kqm~~l~~eKr~Lq~~l~~~~s~~~s~~d~~~~~~~~Dt~e~~~shI~~Lr~EV~RLR~qL~ 246 (310)
T PF09755_consen 178 ALVNRLWKQMDKLEAEKRRLQEKLEQPVSAPPSPRDTVNVSEENDTAERLSSHIRSLRQEVSRLRQQLA 246 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCcchHHhhcccCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666777766666666665433334444432 3344445555555555554443
No 266
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=90.43 E-value=19 Score=35.70 Aligned_cols=44 Identities=20% Similarity=0.191 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 002676 725 HAEEQMKACLTEALRYNSEDRHLAVNLETTKWELADAEKELKWL 768 (894)
Q Consensus 725 ~l~~~l~~~~~~~~~l~~e~~~~~~~~~~l~~~l~~l~~~l~~~ 768 (894)
++...+..|..+.....++++.+..++..+...|.....+....
T Consensus 36 e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~ 79 (230)
T PF10146_consen 36 EYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKR 79 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444444444444444443333333333333
No 267
>PF14319 Zn_Tnp_IS91: Transposase zinc-binding domain
Probab=90.33 E-value=0.1 Score=44.96 Aligned_cols=45 Identities=29% Similarity=0.499 Sum_probs=31.2
Q ss_pred HhcccccccccccccccCCcccccCCCc--ccHhHHhHhhccCCCCccCcCCCC
Q 002676 833 IKDCKAILKCGVCFDRPKEVVITKCFHL--FCNPCIQRNLEIRHRKCPGCGTAF 884 (894)
Q Consensus 833 ~~~l~~~l~C~iC~~~~~~~v~~~CgH~--fC~~C~~~~~~~~~~~CP~C~~~~ 884 (894)
.+.+..++.|..-...+.......|||. ++++| ++|.||.|+..-
T Consensus 24 ~k~~~~il~Crt~~~G~~~~~C~~Cg~~~~~~~SC-------k~R~CP~C~~~~ 70 (111)
T PF14319_consen 24 RKAVEAILACRTEALGFHRYRCEDCGHEKIVYNSC-------KNRHCPSCQAKA 70 (111)
T ss_pred HHHHHHHHhcCCccCCcceeecCCCCceEEecCcc-------cCcCCCCCCChH
Confidence 3344445778776666666677778887 48888 566799998653
No 268
>PTZ00303 phosphatidylinositol kinase; Provisional
Probab=90.22 E-value=0.16 Score=56.47 Aligned_cols=32 Identities=19% Similarity=0.276 Sum_probs=26.1
Q ss_pred ccccccccccC---------CcccccCCCcccHhHHhHhhc
Q 002676 840 LKCGVCFDRPK---------EVVITKCFHLFCNPCIQRNLE 871 (894)
Q Consensus 840 l~C~iC~~~~~---------~~v~~~CgH~fC~~C~~~~~~ 871 (894)
-.|..|...|. ...+..||++||..|......
T Consensus 461 dtC~~C~kkFfSlsK~L~~RKHHCRkCGrVFC~~CSSnRs~ 501 (1374)
T PTZ00303 461 DSCPSCGRAFISLSRPLGTRAHHCRSCGIRLCVFCITKRAH 501 (1374)
T ss_pred CcccCcCCcccccccccccccccccCCccccCccccCCccc
Confidence 46999999884 345778999999999987754
No 269
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=90.19 E-value=58 Score=40.56 Aligned_cols=8 Identities=63% Similarity=0.821 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 002676 804 EEELMEVN 811 (894)
Q Consensus 804 ~~~i~~l~ 811 (894)
...+..++
T Consensus 417 ~~~~~~l~ 424 (1109)
T PRK10929 417 EDALKEVN 424 (1109)
T ss_pred HHHHHHHH
Confidence 33333333
No 270
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=90.03 E-value=25 Score=36.12 Aligned_cols=7 Identities=29% Similarity=0.544 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 002676 615 EAEIIEL 621 (894)
Q Consensus 615 e~el~~l 621 (894)
..++..|
T Consensus 58 ~~d~~~L 64 (264)
T PF06008_consen 58 EQDVENL 64 (264)
T ss_pred HHHHHHH
Confidence 3333333
No 271
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=90.01 E-value=40 Score=38.46 Aligned_cols=15 Identities=40% Similarity=0.501 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHH
Q 002676 611 LSAAEAEIIELVAKL 625 (894)
Q Consensus 611 i~~le~el~~l~~~~ 625 (894)
+..-..++..++..+
T Consensus 364 ~~~ke~E~q~lr~~l 378 (511)
T PF09787_consen 364 LKEKESEIQKLRNQL 378 (511)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333344444444433
No 272
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=89.82 E-value=0.12 Score=53.04 Aligned_cols=43 Identities=28% Similarity=0.427 Sum_probs=31.1
Q ss_pred cccccccccccCCcccc---cCCC--cccHhHHhHhhccCCCCccCcCC
Q 002676 839 ILKCGVCFDRPKEVVIT---KCFH--LFCNPCIQRNLEIRHRKCPGCGT 882 (894)
Q Consensus 839 ~l~C~iC~~~~~~~v~~---~CgH--~fC~~C~~~~~~~~~~~CP~C~~ 882 (894)
.-.||||+..+.-.++. .=|+ .+|.-|-..|.- ...+||.|+.
T Consensus 187 ~~~CPvCGs~P~~s~v~~~~~~G~RyL~CslC~teW~~-~R~~C~~Cg~ 234 (309)
T PRK03564 187 RQFCPVCGSMPVSSVVQIGTTQGLRYLHCNLCESEWHV-VRVKCSNCEQ 234 (309)
T ss_pred CCCCCCCCCcchhheeeccCCCCceEEEcCCCCCcccc-cCccCCCCCC
Confidence 46899999877544332 3454 459999988866 4567999996
No 273
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=89.76 E-value=19 Score=34.44 Aligned_cols=73 Identities=22% Similarity=0.282 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002676 609 QRLSAAEAEIIELVAKLDASERDVMELEEAMKSKDREAEAYIAEMETIGQAFEDMQTQNQHLLQQVAERDDLN 681 (894)
Q Consensus 609 ~~i~~le~el~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~~~~~~~~~~~l~~~l~~~~~~~ 681 (894)
.+|-.|...+.+++..+......+..+...+.....+++....++........-+...+..+..++..+...+
T Consensus 31 ~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~~le~El~~Lr~~l 103 (202)
T PF06818_consen 31 SEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLREKLGQLEAELAELREEL 103 (202)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhhhhHHHHHHHHHHH
Confidence 4455566666666666666666666666666666666666666665555444444444444444444444433
No 274
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=89.74 E-value=32 Score=36.88 Aligned_cols=9 Identities=56% Similarity=0.859 Sum_probs=3.5
Q ss_pred HHHHHHHHh
Q 002676 826 IQKLQDEIK 834 (894)
Q Consensus 826 ~~~L~ee~~ 834 (894)
+.+|+.+|.
T Consensus 337 l~kLk~EI~ 345 (359)
T PF10498_consen 337 LTKLKQEIK 345 (359)
T ss_pred HHHHHHHHH
Confidence 333444433
No 275
>PRK04023 DNA polymerase II large subunit; Validated
Probab=89.71 E-value=0.19 Score=58.46 Aligned_cols=47 Identities=19% Similarity=0.285 Sum_probs=34.7
Q ss_pred ccccccccccCCcccccCCC-----cccHhHHhHhhccCCCCccCcCCCCCCCCc
Q 002676 840 LKCGVCFDRPKEVVITKCFH-----LFCNPCIQRNLEIRHRKCPGCGTAFGQSDV 889 (894)
Q Consensus 840 l~C~iC~~~~~~~v~~~CgH-----~fC~~C~~~~~~~~~~~CP~C~~~~~~~d~ 889 (894)
..|+-|+.......+-.||. .||..|-... ....||.|+.......-
T Consensus 627 RfCpsCG~~t~~frCP~CG~~Te~i~fCP~CG~~~---~~y~CPKCG~El~~~s~ 678 (1121)
T PRK04023 627 RKCPSCGKETFYRRCPFCGTHTEPVYRCPRCGIEV---EEDECEKCGREPTPYSK 678 (1121)
T ss_pred ccCCCCCCcCCcccCCCCCCCCCcceeCccccCcC---CCCcCCCCCCCCCccce
Confidence 48999998765556667995 4999995443 33569999998876543
No 276
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=89.61 E-value=0.031 Score=43.78 Aligned_cols=33 Identities=15% Similarity=0.436 Sum_probs=18.4
Q ss_pred cccccccccccCC----cccccCCCcccHhHHhHhhc
Q 002676 839 ILKCGVCFDRPKE----VVITKCFHLFCNPCIQRNLE 871 (894)
Q Consensus 839 ~l~C~iC~~~~~~----~v~~~CgH~fC~~C~~~~~~ 871 (894)
.-.|.+|...|.- .....||++||..|......
T Consensus 9 ~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~~~ 45 (69)
T PF01363_consen 9 ASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQRIP 45 (69)
T ss_dssp -SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EEEE
T ss_pred CCcCcCcCCcCCCceeeEccCCCCCEECCchhCCEEc
Confidence 4689999999843 33447999999999987654
No 277
>PF10235 Cript: Microtubule-associated protein CRIPT; InterPro: IPR019367 The CRIPT protein is a cytoskeletal protein involved in microtubule production. This C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners [].
Probab=89.59 E-value=0.2 Score=40.41 Aligned_cols=36 Identities=22% Similarity=0.606 Sum_probs=27.3
Q ss_pred ccccccccccCCcccccCCCcccHhHHhHhhccCCCCccCcCCCCC
Q 002676 840 LKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFG 885 (894)
Q Consensus 840 l~C~iC~~~~~~~v~~~CgH~fC~~C~~~~~~~~~~~CP~C~~~~~ 885 (894)
-.|.+|......+ ||.||..|.. ....|++||..+.
T Consensus 45 ~~C~~CK~~v~q~-----g~~YCq~CAY-----kkGiCamCGKki~ 80 (90)
T PF10235_consen 45 SKCKICKTKVHQP-----GAKYCQTCAY-----KKGICAMCGKKIL 80 (90)
T ss_pred ccccccccccccC-----CCccChhhhc-----ccCcccccCCeec
Confidence 3788887655443 9999999964 3457999999873
No 278
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=89.11 E-value=50 Score=38.32 Aligned_cols=33 Identities=27% Similarity=0.257 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 002676 603 AEAACQQRLSAAEAEIIELVAKLDASERDVMEL 635 (894)
Q Consensus 603 ~~~~l~~~i~~le~el~~l~~~~~~~~~~~~~l 635 (894)
....+..++..+......+..+++.+..++.++
T Consensus 169 ~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~EL 201 (563)
T TIGR00634 169 AWLKARQQLKDRQQKEQELAQRLDFLQFQLEEL 201 (563)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444443
No 279
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=88.96 E-value=0.56 Score=41.21 Aligned_cols=44 Identities=20% Similarity=0.326 Sum_probs=28.7
Q ss_pred cccccccccccC-----CcccccCCCcccHhHHhHhhccCCCCccCcCC
Q 002676 839 ILKCGVCFDRPK-----EVVITKCFHLFCNPCIQRNLEIRHRKCPGCGT 882 (894)
Q Consensus 839 ~l~C~iC~~~~~-----~~v~~~CgH~fC~~C~~~~~~~~~~~CP~C~~ 882 (894)
.-.|.+|..+|. ..+...|+|.+|..|.-.......-.|.+|..
T Consensus 54 ~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~~~~~~~WlC~vC~k 102 (118)
T PF02318_consen 54 ERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVYSKKEPIWLCKVCQK 102 (118)
T ss_dssp CSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEETSSSCCEEEHHHHH
T ss_pred CcchhhhCCcccccCCCCCcCCcCCccccCccCCcCCCCCCEEChhhHH
Confidence 368999998763 25566899999999987632222334888864
No 280
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=88.93 E-value=0.076 Score=55.39 Aligned_cols=44 Identities=30% Similarity=0.389 Sum_probs=21.6
Q ss_pred ccccccccccCCcccccC---C--CcccHhHHhHhhccCCCCccCcCCCC
Q 002676 840 LKCGVCFDRPKEVVITKC---F--HLFCNPCIQRNLEIRHRKCPGCGTAF 884 (894)
Q Consensus 840 l~C~iC~~~~~~~v~~~C---g--H~fC~~C~~~~~~~~~~~CP~C~~~~ 884 (894)
-.||||+..+.-.++..= | |.+|.-|-..|.- ...+||.||..-
T Consensus 173 g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~-~R~~Cp~Cg~~~ 221 (290)
T PF04216_consen 173 GYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRF-VRIKCPYCGNTD 221 (290)
T ss_dssp SS-TTT---EEEEEEE------EEEEEETTT--EEE---TTS-TTT---S
T ss_pred CcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeee-cCCCCcCCCCCC
Confidence 589999987655444432 4 5679999988855 445799999753
No 281
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=88.79 E-value=0.97 Score=46.42 Aligned_cols=10 Identities=30% Similarity=0.388 Sum_probs=0.0
Q ss_pred HHHHHHHHHH
Q 002676 613 AAEAEIIELV 622 (894)
Q Consensus 613 ~le~el~~l~ 622 (894)
.++.-+..|.
T Consensus 39 aLEssv~sL~ 48 (326)
T PF04582_consen 39 ALESSVASLS 48 (326)
T ss_dssp ----------
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 282
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=88.79 E-value=0.14 Score=30.90 Aligned_cols=24 Identities=29% Similarity=0.939 Sum_probs=14.9
Q ss_pred cccHhHHhHhhccCCCCccCcCCCC
Q 002676 860 LFCNPCIQRNLEIRHRKCPGCGTAF 884 (894)
Q Consensus 860 ~fC~~C~~~~~~~~~~~CP~C~~~~ 884 (894)
++|..|-.. +....+.||.||.++
T Consensus 3 ~~Cp~Cg~~-~~~~~~fC~~CG~~L 26 (26)
T PF13248_consen 3 MFCPNCGAE-IDPDAKFCPNCGAKL 26 (26)
T ss_pred CCCcccCCc-CCcccccChhhCCCC
Confidence 456666552 344567788888764
No 283
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=88.67 E-value=50 Score=37.70 Aligned_cols=49 Identities=18% Similarity=0.302 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002676 735 TEALRYNSEDRHLAVNLETTKWELADAEKELKWLKSAVTSSDKEYEQIQ 783 (894)
Q Consensus 735 ~~~~~l~~e~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~el~~~~ 783 (894)
.+....-++.+.+..+++.+.+++..+...-..+...+..+..+++.+.
T Consensus 209 kermaAle~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~ 257 (916)
T KOG0249|consen 209 KERMAALEDKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLR 257 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3333344444555555555555555555555555444455555554444
No 284
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=88.57 E-value=0.056 Score=41.03 Aligned_cols=40 Identities=23% Similarity=0.522 Sum_probs=21.9
Q ss_pred ccccccccccCCcccccCCCcccHhHHhHhhccCCCCccCcCCCCC
Q 002676 840 LKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFG 885 (894)
Q Consensus 840 l~C~iC~~~~~~~v~~~CgH~fC~~C~~~~~~~~~~~CP~C~~~~~ 885 (894)
+.||.|...+.-.- ||.+|..|-..+.. ...||.|+.+..
T Consensus 2 ~~CP~C~~~L~~~~----~~~~C~~C~~~~~~--~a~CPdC~~~Le 41 (70)
T PF07191_consen 2 NTCPKCQQELEWQG----GHYHCEACQKDYKK--EAFCPDCGQPLE 41 (70)
T ss_dssp -B-SSS-SBEEEET----TEEEETTT--EEEE--EEE-TTT-SB-E
T ss_pred CcCCCCCCccEEeC----CEEECcccccccee--cccCCCcccHHH
Confidence 67999997643222 78889999876532 456999998763
No 285
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=88.55 E-value=35 Score=35.80 Aligned_cols=14 Identities=29% Similarity=0.487 Sum_probs=7.4
Q ss_pred HHHHHHHHHHhccc
Q 002676 824 AAIQKLQDEIKDCK 837 (894)
Q Consensus 824 ~~~~~L~ee~~~l~ 837 (894)
..+..|+..+..+.
T Consensus 271 ~Ei~~Lk~~~~~Le 284 (312)
T smart00787 271 KEIEKLKEQLKLLQ 284 (312)
T ss_pred HHHHHHHHHHHHHH
Confidence 45555555555544
No 286
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=88.44 E-value=0.38 Score=54.78 Aligned_cols=47 Identities=26% Similarity=0.671 Sum_probs=35.8
Q ss_pred ccccccccccccCCcc----cccCCCcccHhHHhHhhccC------CCCccCcCCCC
Q 002676 838 AILKCGVCFDRPKEVV----ITKCFHLFCNPCIQRNLEIR------HRKCPGCGTAF 884 (894)
Q Consensus 838 ~~l~C~iC~~~~~~~v----~~~CgH~fC~~C~~~~~~~~------~~~CP~C~~~~ 884 (894)
..+.|.||.+.++.+. ...|||+|=..||.+|...+ .-+||.|....
T Consensus 190 ~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv~ 246 (950)
T KOG1952|consen 190 RKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSVS 246 (950)
T ss_pred CceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccchh
Confidence 3589999999886632 23799999999999998752 22599999443
No 287
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=88.40 E-value=1.1 Score=46.12 Aligned_cols=6 Identities=17% Similarity=0.268 Sum_probs=2.1
Q ss_pred HHHHHH
Q 002676 711 QINALV 716 (894)
Q Consensus 711 ~l~~~~ 716 (894)
.++..+
T Consensus 130 NLksdV 135 (326)
T PF04582_consen 130 NLKSDV 135 (326)
T ss_dssp HHHHHH
T ss_pred hhhhhh
Confidence 333333
No 288
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=88.05 E-value=0.44 Score=42.75 Aligned_cols=20 Identities=25% Similarity=0.803 Sum_probs=17.0
Q ss_pred cccccccccccCCcccccCC
Q 002676 839 ILKCGVCFDRPKEVVITKCF 858 (894)
Q Consensus 839 ~l~C~iC~~~~~~~v~~~Cg 858 (894)
..+||||++.+-+.|++-|.
T Consensus 2 d~~CpICme~PHNAVLLlCS 21 (162)
T PF07800_consen 2 DVTCPICMEHPHNAVLLLCS 21 (162)
T ss_pred CccCceeccCCCceEEEEec
Confidence 47899999999999988653
No 289
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=87.66 E-value=36 Score=34.95 Aligned_cols=29 Identities=17% Similarity=0.251 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHhcc
Q 002676 531 AEIKSLKALIEKLQKDKLESQIMLDMYGQ 559 (894)
Q Consensus 531 ~~l~~l~~~~~~l~~~~~~l~~~~~~~~~ 559 (894)
.....|...+..+...+..+-.....|..
T Consensus 87 ~~a~~L~~~i~~l~~~i~~l~~~~~~l~~ 115 (264)
T PF06008_consen 87 QRAQDLEQFIQNLQDNIQELIEQVESLNE 115 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 33444444444555555555544544444
No 290
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=87.43 E-value=11 Score=29.66 Aligned_cols=22 Identities=27% Similarity=0.386 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHHH
Q 002676 673 QVAERDDLNIKLVSESVKTKQV 694 (894)
Q Consensus 673 ~l~~~~~~~~~l~~e~~~~~~~ 694 (894)
.+.+.+..|..+..+...+...
T Consensus 6 ~l~EKDe~Ia~L~eEGekLSk~ 27 (74)
T PF12329_consen 6 KLAEKDEQIAQLMEEGEKLSKK 27 (74)
T ss_pred HHHhHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444433333
No 291
>KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=87.35 E-value=0.14 Score=52.05 Aligned_cols=45 Identities=22% Similarity=0.498 Sum_probs=31.5
Q ss_pred cccccccc-ccC----CcccccCCCcccHhHHhHhhcc-----C-CCCccCcCCCC
Q 002676 840 LKCGVCFD-RPK----EVVITKCFHLFCNPCIQRNLEI-----R-HRKCPGCGTAF 884 (894)
Q Consensus 840 l~C~iC~~-~~~----~~v~~~CgH~fC~~C~~~~~~~-----~-~~~CP~C~~~~ 884 (894)
..|.+|.. .|. ...+..||++||..|....+.. . -+-|+.|-..+
T Consensus 169 ~~C~~C~~~~Ftl~~RRHHCR~CG~ivC~~Cs~n~~~l~~~~~k~~rvC~~CF~el 224 (288)
T KOG1729|consen 169 TECMVCGCTEFTLSERRHHCRNCGDIVCAPCSRNRFLLPNLSTKPIRVCDICFEEL 224 (288)
T ss_pred eecccCCCccccHHHHHHHHHhcchHhhhhhhcCcccccccCCCCceecHHHHHHH
Confidence 58999998 552 2556789999999998875432 1 12477776555
No 292
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=87.25 E-value=42 Score=35.24 Aligned_cols=42 Identities=14% Similarity=0.206 Sum_probs=17.2
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002676 748 AVNLETTKWELADAEKELKWLKSAVTSSDKEYEQIQRKTEDM 789 (894)
Q Consensus 748 ~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~el~~~~~~l~e~ 789 (894)
..++......+.+++.++..+...+.....+...+...|.+.
T Consensus 217 ~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~a 258 (312)
T smart00787 217 LQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEA 258 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444444444444444444444444444443
No 293
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=87.23 E-value=15 Score=41.06 Aligned_cols=35 Identities=31% Similarity=0.540 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002676 777 KEYEQIQRKTEDMRKELENERNERKKLEEELMEVN 811 (894)
Q Consensus 777 ~el~~~~~~l~e~~~~l~~~~~~~~~l~~~i~~l~ 811 (894)
.++.....++..+...+.+....++.|+..+..++
T Consensus 474 rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~ 508 (652)
T COG2433 474 REIRARDRRIERLEKELEEKKKRVEELERKLAELR 508 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555555555555555555
No 294
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=86.79 E-value=0.62 Score=32.19 Aligned_cols=39 Identities=23% Similarity=0.624 Sum_probs=20.2
Q ss_pred ccccccccCCcccc---cCCCcccHhHHhHhhccCCC-CccCc
Q 002676 842 CGVCFDRPKEVVIT---KCFHLFCNPCIQRNLEIRHR-KCPGC 880 (894)
Q Consensus 842 C~iC~~~~~~~v~~---~CgH~fC~~C~~~~~~~~~~-~CP~C 880 (894)
|.+|.+....-+.= .|+=.+=..|+..++..+.. +||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 56666554332222 36656678999999997665 49998
No 296
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=86.65 E-value=6.3 Score=42.33 Aligned_cols=20 Identities=15% Similarity=0.037 Sum_probs=10.7
Q ss_pred ccHhHHhHhhccCCCCccCc
Q 002676 861 FCNPCIQRNLEIRHRKCPGC 880 (894)
Q Consensus 861 fC~~C~~~~~~~~~~~CP~C 880 (894)
+|..|+.++..+|.|.|-+|
T Consensus 360 t~~~~~~Pl~~tR~r~~~t~ 379 (395)
T PF10267_consen 360 TVANCPLPLTRTRLRTLTTL 379 (395)
T ss_pred HHhcCCcHHhhccHHHHHHH
Confidence 34455556655555555444
No 297
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=86.56 E-value=60 Score=36.36 Aligned_cols=94 Identities=14% Similarity=0.149 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 002676 616 AEIIELVAKLDASERDVMELEEAMKSKDREAEAYIAEMETIGQAFEDMQTQNQHLLQQVAERDDLNIKLVSESVKTKQVQ 695 (894)
Q Consensus 616 ~el~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~e~~~~~~~~ 695 (894)
..+..|....+.+.-++..|.+++......+..+.--|+.....+...++.++.-.-....++.+--.++.++..++=.+
T Consensus 111 erLaRLe~dkesL~LQvsvLteqVeaQgEKIrDLE~cie~kr~kLnatEEmLQqellsrtsLETqKlDLmaevSeLKLkl 190 (861)
T KOG1899|consen 111 ERLARLEMDKESLQLQVSVLTEQVEAQGEKIRDLETCIEEKRNKLNATEEMLQQELLSRTSLETQKLDLMAEVSELKLKL 190 (861)
T ss_pred HHHHHHhcchhhheehHHHHHHHHHHhhhhHHHHHHHHHHHHhhhchHHHHHHHHHHhhhhHHHHHhHHHHHHHHhHHHH
Confidence 33334434444444444444455555555555555555555555555555554444444555555555666665555555
Q ss_pred HHHHHHHHHHHHHH
Q 002676 696 SFLLSEKQALARQL 709 (894)
Q Consensus 696 ~~l~~e~~~l~~~l 709 (894)
..+..+....+..+
T Consensus 191 talEkeq~e~E~K~ 204 (861)
T KOG1899|consen 191 TALEKEQNETEKKL 204 (861)
T ss_pred HHHHHHhhhHHHHH
Confidence 55554444444443
No 298
>COG3364 Zn-ribbon containing protein [General function prediction only]
Probab=86.48 E-value=0.32 Score=39.41 Aligned_cols=26 Identities=27% Similarity=0.654 Sum_probs=17.0
Q ss_pred ccccCCCcccHhHHhHhhccCCCCccCcCCC
Q 002676 853 VITKCFHLFCNPCIQRNLEIRHRKCPGCGTA 883 (894)
Q Consensus 853 v~~~CgH~fC~~C~~~~~~~~~~~CP~C~~~ 883 (894)
.+++|||+|=.. +..+- +=||.||..
T Consensus 4 ~CtrCG~vf~~g--~~~il---~GCp~CG~n 29 (112)
T COG3364 4 QCTRCGEVFDDG--SEEIL---SGCPKCGCN 29 (112)
T ss_pred eecccccccccc--cHHHH---ccCccccch
Confidence 467899999665 22222 239999854
No 299
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=86.37 E-value=0.38 Score=47.75 Aligned_cols=48 Identities=6% Similarity=-0.166 Sum_probs=38.5
Q ss_pred hcccccccccccccccCCcccccCCCc-ccHhHHhHhhccCCCCccCcCCCC
Q 002676 834 KDCKAILKCGVCFDRPKEVVITKCFHL-FCNPCIQRNLEIRHRKCPGCGTAF 884 (894)
Q Consensus 834 ~~l~~~l~C~iC~~~~~~~v~~~CgH~-fC~~C~~~~~~~~~~~CP~C~~~~ 884 (894)
+.+...+.|.+|+...-.++..+|||- ||.+|..-. -...||+|....
T Consensus 338 ~~~~s~~~~~~~~~~~~st~~~~~~~n~~~~~~a~~s---~~~~~~~c~~~~ 386 (394)
T KOG2113|consen 338 NGLMSSLKGTSAGFGLLSTIWSGGNMNLSPGSLASAS---ASPTSSTCDHND 386 (394)
T ss_pred ccchhhcccccccCceeeeEeecCCcccChhhhhhcc---cCCccccccccc
Confidence 345556899999999998999999985 899999844 456799998654
No 300
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=86.13 E-value=50 Score=37.11 Aligned_cols=6 Identities=17% Similarity=0.279 Sum_probs=2.2
Q ss_pred HHHHHh
Q 002676 829 LQDEIK 834 (894)
Q Consensus 829 L~ee~~ 834 (894)
+..++.
T Consensus 536 ~e~~~g 541 (652)
T COG2433 536 AEEEYG 541 (652)
T ss_pred HHHhhc
Confidence 333333
No 301
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.12 E-value=59 Score=35.84 Aligned_cols=67 Identities=15% Similarity=0.208 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002676 609 QRLSAAEAEIIELVAKLDASERDVMELEEAMKSKDREAEAYIAEMETIGQAFEDMQTQNQHLLQQVA 675 (894)
Q Consensus 609 ~~i~~le~el~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~~~~~~~~~~~l~~~l~ 675 (894)
++...|...|..++..+......+..++.....+..-......++..+..+++.-.+.+..+..++.
T Consensus 338 ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leIalEqkkEec~kme~qLk 404 (654)
T KOG4809|consen 338 KENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQKKEECSKMEAQLK 404 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444445555555555555555544444443
No 302
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=86.04 E-value=41 Score=33.98 Aligned_cols=31 Identities=23% Similarity=0.499 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhHHHHHHH
Q 002676 800 RKKLEEELMEVNNKVAELTSETGEAAIQKLQ 830 (894)
Q Consensus 800 ~~~l~~~i~~l~~~i~~l~~~~~~~~~~~L~ 830 (894)
...++..+..|+..|..+...+....+..+-
T Consensus 184 nk~lq~QL~~L~~EL~~~kde~k~T~~D~~h 214 (246)
T PF00769_consen 184 NKRLQEQLKELKSELEQLKDEEKQTQLDIIH 214 (246)
T ss_dssp -HHHHHHHHHHHHHHHTTB-CCG--HHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhhhhccchhHHHH
Confidence 3467777777887777766554433333333
No 303
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=86.02 E-value=69 Score=36.56 Aligned_cols=14 Identities=29% Similarity=0.449 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHhh
Q 002676 575 RRAHSQAEVLKNAL 588 (894)
Q Consensus 575 ~~~~~~~~~l~~~l 588 (894)
..+...+..++.++
T Consensus 158 ~sL~ekl~lld~al 171 (511)
T PF09787_consen 158 RSLQEKLSLLDEAL 171 (511)
T ss_pred hhHHHHHHHHHHHH
Confidence 33444444444443
No 304
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=86.01 E-value=0.66 Score=47.27 Aligned_cols=48 Identities=19% Similarity=0.604 Sum_probs=36.9
Q ss_pred ccccccccccCC----cccccCCCcccHhHHhHhhccCCCCccCcCCCCCCCC
Q 002676 840 LKCGVCFDRPKE----VVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSD 888 (894)
Q Consensus 840 l~C~iC~~~~~~----~v~~~CgH~fC~~C~~~~~~~~~~~CP~C~~~~~~~d 888 (894)
-.||+|...... .+-.+|||..|..|..+... ....||+||++.-.+-
T Consensus 250 ~s~p~~~~~~~~~d~~~lP~~~~~~~~l~~~~t~~~-~~~~~~~~rk~~~~~t 301 (327)
T KOG2068|consen 250 PSCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTISD-GDGRCPGCRKPYERNT 301 (327)
T ss_pred CCCCCCCCcccccccccccccccccchhhhhhcccc-cCCCCCccCCccccCc
Confidence 479999986522 23338999999999999988 5677999998876553
No 305
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=85.71 E-value=0.26 Score=48.48 Aligned_cols=55 Identities=22% Similarity=0.384 Sum_probs=31.1
Q ss_pred cccccccccccccCCcccc-cCCCc------ccHh--HHhHhhccCCCCccCcCCCCCCCCcccc
Q 002676 837 KAILKCGVCFDRPKEVVIT-KCFHL------FCNP--CIQRNLEIRHRKCPGCGTAFGQSDVRFV 892 (894)
Q Consensus 837 ~~~l~C~iC~~~~~~~v~~-~CgH~------fC~~--C~~~~~~~~~~~CP~C~~~~~~~d~~~~ 892 (894)
...++||||...|+...+. .=+.+ ||.. =+++.+= .-..||.||=+|..+|+..+
T Consensus 3 ~k~~~CPvC~~~F~~~~vrs~~~r~~~~d~D~~~~Y~~vnP~~Y-~V~vCP~CgyA~~~~~F~~l 66 (214)
T PF09986_consen 3 DKKITCPVCGKEFKTKKVRSGKIRVIRRDSDFCPRYKGVNPLFY-EVWVCPHCGYAAFEEDFEKL 66 (214)
T ss_pred CCceECCCCCCeeeeeEEEcCCceEeeecCCCccccCCCCCeee-eEEECCCCCCcccccccccC
Confidence 3458999999999764322 11111 2211 0211111 12249999999998886543
No 306
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=85.69 E-value=0.46 Score=53.02 Aligned_cols=43 Identities=21% Similarity=0.578 Sum_probs=33.6
Q ss_pred cccccccccccCC--cccccCCCcccHhHHhHhhccCCCCccC-cCC
Q 002676 839 ILKCGVCFDRPKE--VVITKCFHLFCNPCIQRNLEIRHRKCPG-CGT 882 (894)
Q Consensus 839 ~l~C~iC~~~~~~--~v~~~CgH~fC~~C~~~~~~~~~~~CP~-C~~ 882 (894)
.+.|.+|...... -++..|||+.-.+|...|+.+ +-.||. ||.
T Consensus 1028 ~~~C~~C~l~V~gss~~Cg~C~Hv~H~sc~~eWf~~-gd~CpsGCGC 1073 (1081)
T KOG0309|consen 1028 TFQCAICHLAVRGSSNFCGTCGHVGHTSCMMEWFRT-GDVCPSGCGC 1073 (1081)
T ss_pred eeeeeeEeeEeeccchhhccccccccHHHHHHHHhc-CCcCCCCCCc
Confidence 3678888876654 456689999999999999996 457996 543
No 307
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=84.90 E-value=0.38 Score=35.36 Aligned_cols=41 Identities=17% Similarity=0.388 Sum_probs=26.3
Q ss_pred cccccccccccCCcccccCCCcccHhHHhHhhcc-CCCCccCcCCCCCC
Q 002676 839 ILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEI-RHRKCPGCGTAFGQ 886 (894)
Q Consensus 839 ~l~C~iC~~~~~~~v~~~CgH~fC~~C~~~~~~~-~~~~CP~C~~~~~~ 886 (894)
.+.||.|+..|... .++..|....... ....||+|...++.
T Consensus 2 ~f~CP~C~~~~~~~-------~L~~H~~~~H~~~~~~v~CPiC~~~~~~ 43 (54)
T PF05605_consen 2 SFTCPYCGKGFSES-------SLVEHCEDEHRSESKNVVCPICSSRVTD 43 (54)
T ss_pred CcCCCCCCCccCHH-------HHHHHHHhHCcCCCCCccCCCchhhhhh
Confidence 47899999854422 2345565554432 23569999987764
No 308
>PRK11281 hypothetical protein; Provisional
Probab=84.84 E-value=1.2e+02 Score=38.13 Aligned_cols=25 Identities=20% Similarity=0.255 Sum_probs=11.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 002676 431 SRIERLEVQLQKSIIEKNDLGLKME 455 (894)
Q Consensus 431 ~~~~~l~~~l~~~~~el~~l~~~~~ 455 (894)
.+...++..+...-.++......++
T Consensus 80 ~~~~~L~k~l~~Ap~~l~~a~~~Le 104 (1113)
T PRK11281 80 EETEQLKQQLAQAPAKLRQAQAELE 104 (1113)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3444444444444444444444444
No 309
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=84.78 E-value=0.62 Score=42.02 Aligned_cols=31 Identities=26% Similarity=0.584 Sum_probs=25.3
Q ss_pred cCCCcccHhHHhHhhcc----CCC------CccCcCCCCCC
Q 002676 856 KCFHLFCNPCIQRNLEI----RHR------KCPGCGTAFGQ 886 (894)
Q Consensus 856 ~CgH~fC~~C~~~~~~~----~~~------~CP~C~~~~~~ 886 (894)
.||..|-..|+..|++. |+. .||-|..|+.-
T Consensus 189 qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pial 229 (234)
T KOG3268|consen 189 QCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIAL 229 (234)
T ss_pred ccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCccee
Confidence 79999999999999873 332 49999998864
No 310
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=84.73 E-value=15 Score=35.03 Aligned_cols=70 Identities=16% Similarity=0.119 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002676 719 AKLRILHAEEQMKACLTEALRYNSEDRHLAVNLETTKWELADAEKELKWLKSAVTSSDKEYEQIQRKTED 788 (894)
Q Consensus 719 ~~~~~~~l~~~l~~~~~~~~~l~~e~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~el~~~~~~l~e 788 (894)
++....++..++..+..+...+..++..++.+++..+..+..++.+...+......+..++..+..++.+
T Consensus 133 ~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~E 202 (290)
T COG4026 133 LKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDE 202 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHH
Confidence 3333444444444444444444444444444444444444444444444444333333334344333333
No 311
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=84.71 E-value=0.74 Score=43.17 Aligned_cols=66 Identities=23% Similarity=0.475 Sum_probs=42.3
Q ss_pred HHHHHHHHHhccc--ccccccccccccCC-cccccCCCcccHhHHhHhhccCCCCccCcCCCCCCCCcccc
Q 002676 825 AIQKLQDEIKDCK--AILKCGVCFDRPKE-VVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDVRFV 892 (894)
Q Consensus 825 ~~~~L~ee~~~l~--~~l~C~iC~~~~~~-~v~~~CgH~fC~~C~~~~~~~~~~~CP~C~~~~~~~d~~~~ 892 (894)
.+..|..-+...- +...|.+|....-. ..+-.||-.+--.|+++++.. ...||.||..|... |+++
T Consensus 165 alaELe~YL~s~y~dnlk~Cn~Ch~LvIqg~rCg~c~i~~h~~c~qty~q~-~~~cphc~d~w~h~-I~~v 233 (235)
T KOG4718|consen 165 ALAELEFYLSSNYADNLKNCNLCHCLVIQGIRCGSCNIQYHRGCIQTYLQR-RDICPHCGDLWTHP-IRRV 233 (235)
T ss_pred HHHHHHHHHHhhhHHHHHHHhHhHHHhheeeccCcccchhhhHHHHHHhcc-cCcCCchhcccCcc-cccc
Confidence 4444444333333 44689999865433 233356655668999999884 56799999998754 4444
No 312
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=84.12 E-value=50 Score=33.32 Aligned_cols=9 Identities=11% Similarity=0.313 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 002676 777 KEYEQIQRK 785 (894)
Q Consensus 777 ~el~~~~~~ 785 (894)
..+..++..
T Consensus 199 ~~l~~Lq~~ 207 (240)
T PF12795_consen 199 QQLQALQNL 207 (240)
T ss_pred HHHHHHHHH
Confidence 333333333
No 313
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=84.10 E-value=52 Score=33.49 Aligned_cols=17 Identities=12% Similarity=0.323 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHhhhh
Q 002676 801 KKLEEELMEVNNKVAEL 817 (894)
Q Consensus 801 ~~l~~~i~~l~~~i~~l 817 (894)
..++..|..|..-...|
T Consensus 295 ~~lq~kiq~LekLcRAL 311 (391)
T KOG1850|consen 295 ETLQKKIQRLEKLCRAL 311 (391)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444333333
No 314
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=84.07 E-value=0.34 Score=47.79 Aligned_cols=12 Identities=17% Similarity=0.323 Sum_probs=6.9
Q ss_pred ccccccccccCC
Q 002676 840 LKCGVCFDRPKE 851 (894)
Q Consensus 840 l~C~iC~~~~~~ 851 (894)
..|++|...|..
T Consensus 162 ~~C~~C~K~YvS 173 (279)
T KOG2462|consen 162 FSCKYCGKVYVS 173 (279)
T ss_pred ccCCCCCceeee
Confidence 456666665544
No 315
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=84.02 E-value=0.72 Score=45.84 Aligned_cols=37 Identities=22% Similarity=0.450 Sum_probs=25.2
Q ss_pred cccccCCCcccHhHHhHhhccC--------CCCccCcCCCCCCCC
Q 002676 852 VVITKCFHLFCNPCIQRNLEIR--------HRKCPGCGTAFGQSD 888 (894)
Q Consensus 852 ~v~~~CgH~fC~~C~~~~~~~~--------~~~CP~C~~~~~~~d 888 (894)
..+.||||+.-..-+.-|.... ..-||+|...+....
T Consensus 373 haF~PCGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~ge~ 417 (429)
T KOG3842|consen 373 HAFNPCGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAGEQ 417 (429)
T ss_pred cccCCcccccchhhhhHhhcCcCCCccccccccCcchhhhhccCC
Confidence 4466999987666666665542 123999999887543
No 316
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=83.84 E-value=0.33 Score=50.40 Aligned_cols=49 Identities=18% Similarity=0.331 Sum_probs=0.0
Q ss_pred cccccccccc--c-----------------CCcccccCCCcccHhHHhHhhccCC--------CCccCcCCCCCCC
Q 002676 839 ILKCGVCFDR--P-----------------KEVVITKCFHLFCNPCIQRNLEIRH--------RKCPGCGTAFGQS 887 (894)
Q Consensus 839 ~l~C~iC~~~--~-----------------~~~v~~~CgH~fC~~C~~~~~~~~~--------~~CP~C~~~~~~~ 887 (894)
.-.||+|... | -..++-||||+.=..+..-|....- .-||+|..++...
T Consensus 328 ~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~PCGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~g~ 403 (416)
T PF04710_consen 328 SRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNPCGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLDGE 403 (416)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred cccCCCccccCCceeEeeccccceeecCCCCceeecccccccchhhhhhhhcCCCCCCcccccccCCcccCcccCC
Confidence 5789999853 1 1145669999987778877766421 2499999999753
No 317
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=83.72 E-value=0.57 Score=56.34 Aligned_cols=49 Identities=18% Similarity=0.380 Sum_probs=34.5
Q ss_pred ccccccccccCCcccccCCCc-----ccHhHHhHhhc--cCCCCccCcCCCCCCCC
Q 002676 840 LKCGVCFDRPKEVVITKCFHL-----FCNPCIQRNLE--IRHRKCPGCGTAFGQSD 888 (894)
Q Consensus 840 l~C~iC~~~~~~~v~~~CgH~-----fC~~C~~~~~~--~~~~~CP~C~~~~~~~d 888 (894)
..||-|+..-....+-.||+. +|..|-..... +....||.|+.+.....
T Consensus 668 rkCPkCG~~t~~~fCP~CGs~te~vy~CPsCGaev~~des~a~~CP~CGtplv~~~ 723 (1337)
T PRK14714 668 RRCPSCGTETYENRCPDCGTHTEPVYVCPDCGAEVPPDESGRVECPRCDVELTPYQ 723 (1337)
T ss_pred EECCCCCCccccccCcccCCcCCCceeCccCCCccCCCccccccCCCCCCcccccc
Confidence 699999975444566679955 49999875422 11347999999887653
No 318
>PF14353 CpXC: CpXC protein
Probab=83.69 E-value=0.69 Score=41.45 Aligned_cols=48 Identities=21% Similarity=0.220 Sum_probs=25.7
Q ss_pred ccccccccccCCcccccCCCcccHhHHhHhhcc--CCCCccCcCCCCCCC
Q 002676 840 LKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEI--RHRKCPGCGTAFGQS 887 (894)
Q Consensus 840 l~C~iC~~~~~~~v~~~CgH~fC~~C~~~~~~~--~~~~CP~C~~~~~~~ 887 (894)
++||.|+..|.-.+-+...=..=..=....+.. -...||.||..|..+
T Consensus 2 itCP~C~~~~~~~v~~~I~~~~~p~l~e~il~g~l~~~~CP~Cg~~~~~~ 51 (128)
T PF14353_consen 2 ITCPHCGHEFEFEVWTSINADEDPELKEKILDGSLFSFTCPSCGHKFRLE 51 (128)
T ss_pred cCCCCCCCeeEEEEEeEEcCcCCHHHHHHHHcCCcCEEECCCCCCceecC
Confidence 689999887755433322111111222223221 123599999999753
No 319
>PF08882 Acetone_carb_G: Acetone carboxylase gamma subunit; InterPro: IPR014979 Acetone carboxylase is the key enzyme of bacterial acetone metabolism, catalysing the condensation of acetone and CO2 to form acetoacetate [] according to the following reaction: CH3COCH3 + CO2 + ATP = CH3COCH2COO- + AMP + 2P(i) + H+ It has the subunit composition: (alpha(2)beta(2)gamma(2) multimers of 85kDa, 78kDa, and 20kDa subunits). It is expressed to high levels (17 to 25% of soluble protein) in cells grown with acetone as the carbon source but are not present at detectable levels in cells grown with other carbon sources []. Acetone carboxylase may enable Helicobacter pylori to survive off acetone in the stomach of humans and other mammals where it is the etiological agent of peptic ulcer disease []. This entry represents the family of gamma subunit-related acetone carboxylase proteins.
Probab=83.68 E-value=0.28 Score=40.85 Aligned_cols=14 Identities=43% Similarity=0.785 Sum_probs=10.5
Q ss_pred cccccCCCcccHhH
Q 002676 852 VVITKCFHLFCNPC 865 (894)
Q Consensus 852 ~v~~~CgH~fC~~C 865 (894)
.|.-.|||.||..=
T Consensus 24 ~vkc~CGh~f~d~r 37 (112)
T PF08882_consen 24 VVKCDCGHEFCDAR 37 (112)
T ss_pred eeeccCCCeecChh
Confidence 44448999999764
No 320
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.56 E-value=76 Score=34.99 Aligned_cols=20 Identities=10% Similarity=0.385 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 002676 779 YEQIQRKTEDMRKELENERN 798 (894)
Q Consensus 779 l~~~~~~l~e~~~~l~~~~~ 798 (894)
.+.+..++.++..++.....
T Consensus 685 ~ee~~tq~de~~~ql~aaed 704 (772)
T KOG0999|consen 685 CEEYVTQLDELQRQLAAAED 704 (772)
T ss_pred HHHHHHHHHHHHHHHHhhhh
Confidence 34444444444444444333
No 321
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=83.49 E-value=34 Score=33.91 Aligned_cols=46 Identities=22% Similarity=0.218 Sum_probs=36.2
Q ss_pred ccccccccccccCCcccc-cCCCcccHhHHhHhhcc-CCCCccCcCCC
Q 002676 838 AILKCGVCFDRPKEVVIT-KCFHLFCNPCIQRNLEI-RHRKCPGCGTA 883 (894)
Q Consensus 838 ~~l~C~iC~~~~~~~v~~-~CgH~fC~~C~~~~~~~-~~~~CP~C~~~ 883 (894)
-.++||+-+..+.+|++- +|||+|=.+=|...+.. +...||+=|+.
T Consensus 175 fs~rdPis~~~I~nPviSkkC~HvydrDsI~~~l~~~~~i~CPv~gC~ 222 (262)
T KOG2979|consen 175 FSNRDPISKKPIVNPVISKKCGHVYDRDSIMQILCDEITIRCPVLGCE 222 (262)
T ss_pred hcccCchhhhhhhchhhhcCcCcchhhhhHHHHhccCceeecccccCC
Confidence 347999998899998665 89999999988888763 35579985554
No 322
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=83.40 E-value=84 Score=35.37 Aligned_cols=20 Identities=25% Similarity=0.378 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 002676 788 DMRKELENERNERKKLEEEL 807 (894)
Q Consensus 788 e~~~~l~~~~~~~~~l~~~i 807 (894)
.....+......+..++..+
T Consensus 295 ~~~~~l~~~~~~l~~a~~~l 314 (457)
T TIGR01000 295 DLNQKLLELESKIKSLKEDS 314 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 323
>PLN02189 cellulose synthase
Probab=83.32 E-value=0.7 Score=54.92 Aligned_cols=46 Identities=26% Similarity=0.619 Sum_probs=35.9
Q ss_pred ccccccccccCC-------cccccCCCcccHhHHhHhhccCCCCccCcCCCCC
Q 002676 840 LKCGVCFDRPKE-------VVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFG 885 (894)
Q Consensus 840 l~C~iC~~~~~~-------~v~~~CgH~fC~~C~~~~~~~~~~~CP~C~~~~~ 885 (894)
-.|.||++...- +.+--||--.|..|..---+..+..||.|++.+.
T Consensus 35 ~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 35 QVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred ccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 389999987532 3444577778999997766677778999999987
No 324
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=83.12 E-value=0.45 Score=28.62 Aligned_cols=12 Identities=42% Similarity=1.065 Sum_probs=7.5
Q ss_pred CCCccCcCCCCC
Q 002676 874 HRKCPGCGTAFG 885 (894)
Q Consensus 874 ~~~CP~C~~~~~ 885 (894)
.+.||.||-.|.
T Consensus 14 ~~~Cp~CG~~F~ 25 (26)
T PF10571_consen 14 AKFCPHCGYDFE 25 (26)
T ss_pred cCcCCCCCCCCc
Confidence 455777776664
No 325
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=82.94 E-value=1.2e+02 Score=36.62 Aligned_cols=30 Identities=23% Similarity=0.433 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 002676 791 KELENERNERKKLEEELMEVNNKVAELTSE 820 (894)
Q Consensus 791 ~~l~~~~~~~~~l~~~i~~l~~~i~~l~~~ 820 (894)
.++..+........+.++.++.++.....+
T Consensus 870 ~el~~l~~~~~~~~~~le~i~~kl~~~ke~ 899 (1072)
T KOG0979|consen 870 DELRELETKLEKLSEDLERIKDKLSDVKEV 899 (1072)
T ss_pred HHHHHHHhhhhhhhhhHHHHHHHHhhHHHH
Confidence 334444444444444444444444444333
No 326
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=82.86 E-value=22 Score=33.96 Aligned_cols=19 Identities=32% Similarity=0.494 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHhhhhhh
Q 002676 801 KKLEEELMEVNNKVAELTS 819 (894)
Q Consensus 801 ~~l~~~i~~l~~~i~~l~~ 819 (894)
+.+..++..|+.+.+.|.+
T Consensus 187 ~~l~~ev~~L~~r~~ELe~ 205 (290)
T COG4026 187 KKLPGEVYDLKKRWDELEP 205 (290)
T ss_pred HhchhHHHHHHHHHHHhcc
Confidence 3333334444444444433
No 327
>PHA02768 hypothetical protein; Provisional
Probab=82.73 E-value=0.62 Score=33.80 Aligned_cols=39 Identities=18% Similarity=0.224 Sum_probs=25.1
Q ss_pred ccccccccccCCcccccCCCcccHhHHhHhhccCCCCccCcCCCCCCC
Q 002676 840 LKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQS 887 (894)
Q Consensus 840 l~C~iC~~~~~~~v~~~CgH~fC~~C~~~~~~~~~~~CP~C~~~~~~~ 887 (894)
+.|+.|+..|...-.+. +|. .. .+...+|+.|+..|...
T Consensus 6 y~C~~CGK~Fs~~~~L~-~H~-------r~-H~k~~kc~~C~k~f~~~ 44 (55)
T PHA02768 6 YECPICGEIYIKRKSMI-THL-------RK-HNTNLKLSNCKRISLRT 44 (55)
T ss_pred cCcchhCCeeccHHHHH-HHH-------Hh-cCCcccCCcccceeccc
Confidence 58999999997643331 121 11 12356899999999853
No 328
>PF12773 DZR: Double zinc ribbon
Probab=82.71 E-value=1.3 Score=31.95 Aligned_cols=41 Identities=22% Similarity=0.489 Sum_probs=24.3
Q ss_pred ccccccccCCcccccCCCcccHhHHhHhh--ccCCCCccCcCCCCCCCC
Q 002676 842 CGVCFDRPKEVVITKCFHLFCNPCIQRNL--EIRHRKCPGCGTAFGQSD 888 (894)
Q Consensus 842 C~iC~~~~~~~v~~~CgH~fC~~C~~~~~--~~~~~~CP~C~~~~~~~d 888 (894)
|+.|...... +-.||..|-.... ......||.|+.....+.
T Consensus 1 Cp~Cg~~~~~------~~~fC~~CG~~l~~~~~~~~~C~~Cg~~~~~~~ 43 (50)
T PF12773_consen 1 CPHCGTPNPD------DAKFCPHCGTPLPPPDQSKKICPNCGAENPPNA 43 (50)
T ss_pred CCCcCCcCCc------cccCChhhcCChhhccCCCCCCcCCcCCCcCCc
Confidence 5556654332 3556777766665 333456888888766543
No 329
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=82.51 E-value=41 Score=34.97 Aligned_cols=21 Identities=14% Similarity=0.303 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 002676 795 NERNERKKLEEELMEVNNKVA 815 (894)
Q Consensus 795 ~~~~~~~~l~~~i~~l~~~i~ 815 (894)
.+..+...+..+|..|+..++
T Consensus 223 Kl~~eke~L~~qv~klk~qLe 243 (302)
T PF09738_consen 223 KLADEKEELLEQVRKLKLQLE 243 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444455555555554443
No 330
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=82.22 E-value=20 Score=30.72 Aligned_cols=10 Identities=10% Similarity=0.042 Sum_probs=6.2
Q ss_pred ccccccCCcc
Q 002676 844 VCFDRPKEVV 853 (894)
Q Consensus 844 iC~~~~~~~v 853 (894)
||+.-|..+.
T Consensus 88 ICn~~yG~~R 97 (107)
T PF06156_consen 88 ICNVHYGSRR 97 (107)
T ss_pred eCcHHhCCcC
Confidence 6776666554
No 331
>PLN02436 cellulose synthase A
Probab=81.83 E-value=0.85 Score=54.26 Aligned_cols=46 Identities=26% Similarity=0.670 Sum_probs=35.6
Q ss_pred ccccccccccCC-------cccccCCCcccHhHHhHhhccCCCCccCcCCCCC
Q 002676 840 LKCGVCFDRPKE-------VVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFG 885 (894)
Q Consensus 840 l~C~iC~~~~~~-------~v~~~CgH~fC~~C~~~~~~~~~~~CP~C~~~~~ 885 (894)
-.|.||++...- +.+--||--.|..|..---+..+..||.|++.+.
T Consensus 37 ~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 37 QTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1094)
T ss_pred ccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 489999987532 3344577778999997766677778999999987
No 332
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=81.65 E-value=1.8e+02 Score=37.91 Aligned_cols=24 Identities=21% Similarity=0.245 Sum_probs=9.2
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHH
Q 002676 256 QAEIQHLAGELEETMAELEESRRK 279 (894)
Q Consensus 256 ~~e~~~l~~~l~~~~~el~~~~~~ 279 (894)
..++..++..+..+..+++.+..+
T Consensus 296 ~~~~~~~~~~~~~le~~~~~l~~~ 319 (1353)
T TIGR02680 296 REEERELDARTEALEREADALRTR 319 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 333
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=81.54 E-value=1.6e+02 Score=37.24 Aligned_cols=15 Identities=20% Similarity=0.111 Sum_probs=9.7
Q ss_pred CCccCcCCCCCCCCc
Q 002676 875 RKCPGCGTAFGQSDV 889 (894)
Q Consensus 875 ~~CP~C~~~~~~~d~ 889 (894)
..+-++-.||+.=|+
T Consensus 976 ~~~l~lDEp~~~lD~ 990 (1047)
T PRK10246 976 IDSLFLDEGFGTLDS 990 (1047)
T ss_pred CCEEEEeCCCCcCCH
Confidence 346667777776664
No 334
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=81.37 E-value=1 Score=28.99 Aligned_cols=11 Identities=36% Similarity=0.821 Sum_probs=8.3
Q ss_pred CCCccCcCCCC
Q 002676 874 HRKCPGCGTAF 884 (894)
Q Consensus 874 ~~~CP~C~~~~ 884 (894)
.-.||+|+.+-
T Consensus 17 ~~~CP~Cg~~~ 27 (33)
T cd00350 17 PWVCPVCGAPK 27 (33)
T ss_pred CCcCcCCCCcH
Confidence 44799999854
No 335
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=81.24 E-value=0.47 Score=46.07 Aligned_cols=24 Identities=29% Similarity=0.851 Sum_probs=19.6
Q ss_pred ccCCcccccCCCcccHhHHhHhhc
Q 002676 848 RPKEVVITKCFHLFCNPCIQRNLE 871 (894)
Q Consensus 848 ~~~~~v~~~CgH~fC~~C~~~~~~ 871 (894)
....-.+|.|+|+||..|......
T Consensus 14 ~~~~f~LTaC~HvfC~~C~k~~~~ 37 (233)
T KOG4739|consen 14 SQDPFFLTACRHVFCEPCLKASSP 37 (233)
T ss_pred CCCceeeeechhhhhhhhcccCCc
Confidence 366667899999999999987744
No 336
>PLN02195 cellulose synthase A
Probab=81.18 E-value=1.1 Score=52.99 Aligned_cols=47 Identities=19% Similarity=0.581 Sum_probs=36.2
Q ss_pred ccccccccccCC-------cccccCCCcccHhHHhHhhccCCCCccCcCCCCCC
Q 002676 840 LKCGVCFDRPKE-------VVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQ 886 (894)
Q Consensus 840 l~C~iC~~~~~~-------~v~~~CgH~fC~~C~~~~~~~~~~~CP~C~~~~~~ 886 (894)
-.|.||++...- +.+--||--.|.+|..---+..+..||.|++.+..
T Consensus 7 ~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer~eg~q~CpqCkt~Yk~ 60 (977)
T PLN02195 7 PICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYEIKEGRKVCLRCGGPYDA 60 (977)
T ss_pred ccceecccccCcCCCCCeEEEeccCCCccccchhhhhhhcCCccCCccCCcccc
Confidence 579999985422 44557888899999966656667789999999983
No 337
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=80.85 E-value=91 Score=34.03 Aligned_cols=54 Identities=7% Similarity=0.046 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhhhhhHHHHHHHHHhh
Q 002676 59 KLVQQLDSQKHELQSLEAKIKELQEKQTSYDEMLITVNQLWNLFVDDLILLGVR 112 (894)
Q Consensus 59 ~l~~~l~~~~~~~~~L~~~~~~l~~k~~~~~~~l~~~~~~~~~l~~~l~~l~~~ 112 (894)
.|...++.......-|+..+++..+++....+....++.-|.+=..-+..=...
T Consensus 120 eL~kE~~li~~~~~lL~~~l~~~~eQl~~lr~ar~~Le~Dl~dK~~A~~ID~~~ 173 (384)
T PF03148_consen 120 ELLKEVELIENIKRLLQRTLEQAEEQLRLLRAARYRLEKDLSDKFEALEIDTQC 173 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566667777778888999999999999999999999998776655443333
No 338
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=80.74 E-value=0.46 Score=47.21 Aligned_cols=51 Identities=24% Similarity=0.193 Sum_probs=38.8
Q ss_pred cccccccccccccccCCcccccCCCc-ccHhHHhHhhccCCCCccCcCCCCC
Q 002676 835 DCKAILKCGVCFDRPKEVVITKCFHL-FCNPCIQRNLEIRHRKCPGCGTAFG 885 (894)
Q Consensus 835 ~l~~~l~C~iC~~~~~~~v~~~CgH~-fC~~C~~~~~~~~~~~CP~C~~~~~ 885 (894)
.++....|.+|+.+-.=....+|||- ||-.|.-...-.|.+.||+|...|.
T Consensus 132 ~~~~ti~~iqq~tnt~I~T~v~~~~~Vf~Vtg~~~nC~kra~s~eie~ta~~ 183 (394)
T KOG2113|consen 132 PKGATIKRIQQFTNTYIATPVRCGEPVFCVTGAPKNCVKRARSCEIEQTAVT 183 (394)
T ss_pred cccCccchheecccceEeeeccCCCceEEEecCCcchhhhccccchhhhhhh
Confidence 34566788888866554455589985 8999987775558889999998875
No 339
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=80.58 E-value=0.93 Score=45.57 Aligned_cols=42 Identities=21% Similarity=0.578 Sum_probs=35.4
Q ss_pred ccccccccc----cCCcccccCCCcccHhHHhHhhccCCCCccCcCC
Q 002676 840 LKCGVCFDR----PKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGT 882 (894)
Q Consensus 840 l~C~iC~~~----~~~~v~~~CgH~fC~~C~~~~~~~~~~~CP~C~~ 882 (894)
..||+|.+- +..+..++|||..=..|.......+ -.||+|.+
T Consensus 159 ~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~-y~CP~C~~ 204 (276)
T KOG1940|consen 159 FNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEG-YTCPICSK 204 (276)
T ss_pred CCCchhHHHhccccccCCccCcccchHHHHHHHHhccC-CCCCcccc
Confidence 459999964 3558888999998889999998876 88999998
No 340
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=80.56 E-value=1 Score=53.88 Aligned_cols=46 Identities=26% Similarity=0.653 Sum_probs=35.3
Q ss_pred ccccccccccCC-------cccccCCCcccHhHHhHhhccCCCCccCcCCCCC
Q 002676 840 LKCGVCFDRPKE-------VVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFG 885 (894)
Q Consensus 840 l~C~iC~~~~~~-------~v~~~CgH~fC~~C~~~~~~~~~~~CP~C~~~~~ 885 (894)
-.|.||++...- +.+--||--.|..|..---+..+..||.|++.+.
T Consensus 18 qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYk 70 (1079)
T PLN02638 18 QVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred ceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 389999987532 3444677778999997666667778999999987
No 341
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=80.44 E-value=72 Score=32.55 Aligned_cols=14 Identities=14% Similarity=0.211 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHH
Q 002676 799 ERKKLEEELMEVNN 812 (894)
Q Consensus 799 ~~~~l~~~i~~l~~ 812 (894)
.+..++.-+..|+.
T Consensus 300 kiq~LekLcRALq~ 313 (391)
T KOG1850|consen 300 KIQRLEKLCRALQT 313 (391)
T ss_pred HHHHHHHHHHHHHh
Confidence 33334443444433
No 342
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=80.38 E-value=0.79 Score=51.69 Aligned_cols=23 Identities=30% Similarity=0.778 Sum_probs=16.9
Q ss_pred cHhHHhHhhccCCC-------CccCcCCCC
Q 002676 862 CNPCIQRNLEIRHR-------KCPGCGTAF 884 (894)
Q Consensus 862 C~~C~~~~~~~~~~-------~CP~C~~~~ 884 (894)
|..|-..+.+.-.| .||.||-..
T Consensus 154 C~~C~~EY~dP~nRRfHAQp~aCp~CGP~~ 183 (750)
T COG0068 154 CPFCDKEYKDPLNRRFHAQPIACPKCGPHL 183 (750)
T ss_pred CHHHHHHhcCccccccccccccCcccCCCe
Confidence 99999887664333 399999744
No 343
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=80.19 E-value=0.54 Score=48.88 Aligned_cols=32 Identities=25% Similarity=0.426 Sum_probs=0.0
Q ss_pred cccccCCCcccHhHHhHhhc--cCCCCccCcCCC
Q 002676 852 VVITKCFHLFCNPCIQRNLE--IRHRKCPGCGTA 883 (894)
Q Consensus 852 ~v~~~CgH~fC~~C~~~~~~--~~~~~CP~C~~~ 883 (894)
-|-+.|||++...=--.... .+.+.||+|+..
T Consensus 304 ~VYl~CGHVhG~h~Wg~~~~~~~~~r~CPlCr~~ 337 (416)
T PF04710_consen 304 WVYLNCGHVHGYHNWGQDSDRDPRSRTCPLCRQV 337 (416)
T ss_dssp ----------------------------------
T ss_pred eeeccccceeeecccccccccccccccCCCcccc
Confidence 36679999997653322212 247789999964
No 344
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=80.01 E-value=1.1e+02 Score=34.44 Aligned_cols=42 Identities=10% Similarity=0.247 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002676 776 DKEYEQIQRKTE-DMRKELENERNERKKLEEELMEVNNKVAEL 817 (894)
Q Consensus 776 ~~el~~~~~~l~-e~~~~l~~~~~~~~~l~~~i~~l~~~i~~l 817 (894)
+.++..+..... ....++......+..++..+..++..+...
T Consensus 275 ~~~~~~l~~~~~~~~~~~l~~~~~~l~~~~~~l~~a~~~l~~~ 317 (457)
T TIGR01000 275 NSKLAQLKEQQLAKVKQEITDLNQKLLELESKIKSLKEDSQKG 317 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 344444443332 455677777777888888887777776554
No 345
>PF15616 TerY-C: TerY-C metal binding domain
Probab=79.87 E-value=0.55 Score=41.25 Aligned_cols=41 Identities=27% Similarity=0.454 Sum_probs=29.7
Q ss_pred ccccccccccccCCcccccCCCcccHhHHhHhhccCCCCccCcCCCCC
Q 002676 838 AILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFG 885 (894)
Q Consensus 838 ~~l~C~iC~~~~~~~v~~~CgH~fC~~C~~~~~~~~~~~CP~C~~~~~ 885 (894)
..-.||.|...+.=++. .||++||..=- ....||-|+....
T Consensus 76 g~PgCP~CGn~~~fa~C-~CGkl~Ci~g~------~~~~CPwCg~~g~ 116 (131)
T PF15616_consen 76 GAPGCPHCGNQYAFAVC-GCGKLFCIDGE------GEVTCPWCGNEGS 116 (131)
T ss_pred CCCCCCCCcChhcEEEe-cCCCEEEeCCC------CCEECCCCCCeee
Confidence 33789999977665555 89999995432 2457999997543
No 346
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=79.82 E-value=0.84 Score=38.92 Aligned_cols=12 Identities=50% Similarity=1.174 Sum_probs=8.4
Q ss_pred CccCcCCCCCCC
Q 002676 876 KCPGCGTAFGQS 887 (894)
Q Consensus 876 ~CP~C~~~~~~~ 887 (894)
.||.||+.|...
T Consensus 28 vCP~CG~~~~~~ 39 (108)
T PF09538_consen 28 VCPKCGTEFPPE 39 (108)
T ss_pred cCCCCCCccCcc
Confidence 477777777655
No 347
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=79.65 E-value=1.1e+02 Score=34.27 Aligned_cols=21 Identities=14% Similarity=0.154 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHhHHHHHH
Q 002676 614 AEAEIIELVAKLDASERDVME 634 (894)
Q Consensus 614 le~el~~l~~~~~~~~~~~~~ 634 (894)
++.++..++.++...+..+..
T Consensus 176 l~~ql~~~~~~l~~ae~~l~~ 196 (444)
T TIGR03017 176 FVQQIAALREDLARAQSKLSA 196 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444443333333
No 348
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=79.07 E-value=66 Score=32.30 Aligned_cols=70 Identities=9% Similarity=0.223 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh-HHHHHHHHHHhc
Q 002676 766 KWLKSAVTSSDKEYEQIQRKTEDMRKELENERNERKKLEEELMEVNNKVAELTSETGE-AAIQKLQDEIKD 835 (894)
Q Consensus 766 ~~~~~~~~~~~~el~~~~~~l~e~~~~l~~~~~~~~~l~~~i~~l~~~i~~l~~~~~~-~~~~~L~ee~~~ 835 (894)
..+-.+..++..++..++............-.....+.-.+++.++.++++-|..+.. +-+.+++.-+..
T Consensus 276 ~~l~q~fr~a~~~lse~~e~y~q~~~gv~~rT~~L~eVm~e~E~~KqemEe~G~~msDGaplvkIkqavsK 346 (384)
T KOG0972|consen 276 ASLMQKFRRATDTLSELREKYKQASVGVSSRTETLDEVMDEIEQLKQEMEEQGAKMSDGAPLVKIKQAVSK 346 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCchHHHHHHHHHH
Confidence 3333333444444444444444443333344444555566666677777777766654 333333333333
No 349
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=78.87 E-value=1.4 Score=37.45 Aligned_cols=42 Identities=26% Similarity=0.430 Sum_probs=32.0
Q ss_pred ccccccccccCCcc--------------cccCCCcccHhHHhHhhccCCCCccCcCC
Q 002676 840 LKCGVCFDRPKEVV--------------ITKCFHLFCNPCIQRNLEIRHRKCPGCGT 882 (894)
Q Consensus 840 l~C~iC~~~~~~~v--------------~~~CgH~fC~~C~~~~~~~~~~~CP~C~~ 882 (894)
..|-.|...|..+. ...|++.||.+|---+++ .-..||.|..
T Consensus 56 ~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe-~Lh~CPGC~~ 111 (112)
T TIGR00622 56 RFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHE-SLHCCPGCIH 111 (112)
T ss_pred CcccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhh-hccCCcCCCC
Confidence 45999999886531 458999999999666655 4667999973
No 350
>PF12660 zf-TFIIIC: Putative zinc-finger of transcription factor IIIC complex; InterPro: IPR024764 This zinc-finger domain is at the very C terminus of a number of different TFIIIC subunit proteins. This domain might be involved in protein-DNA and/or protein-protein interactions [].; PDB: 2J04_C.
Probab=78.83 E-value=0.29 Score=41.18 Aligned_cols=47 Identities=23% Similarity=0.434 Sum_probs=14.9
Q ss_pred ccccccccc--cCCcccccC--CCcc--cHhHHhHhhccCCCCccCcCCCCCC
Q 002676 840 LKCGVCFDR--PKEVVITKC--FHLF--CNPCIQRNLEIRHRKCPGCGTAFGQ 886 (894)
Q Consensus 840 l~C~iC~~~--~~~~v~~~C--gH~f--C~~C~~~~~~~~~~~CP~C~~~~~~ 886 (894)
-.|++|... |.++....| ||+| |..=.........+.||.|+..+-.
T Consensus 15 E~C~~C~~~i~~~~~~~~~C~~GH~w~RC~lT~l~i~~~~~r~C~~C~~~~l~ 67 (99)
T PF12660_consen 15 EKCPICGAPIPFDDLDEAQCENGHVWPRCALTFLPIQTPGVRVCPVCGRRALD 67 (99)
T ss_dssp --------------SSEEE-TTS-EEEB-SSS-SBS-SS-EEE-TTT--EEE-
T ss_pred ccccccccccccCCcCEeECCCCCEEeeeeeeeeeeccCCeeEcCCCCCEEec
Confidence 369999975 455544444 7887 5443334444445679999977653
No 351
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=78.66 E-value=1.9 Score=38.86 Aligned_cols=47 Identities=19% Similarity=0.454 Sum_probs=32.9
Q ss_pred cccccccccccCCcccccCC--Cc---ccHhHHhHhhccC-CCCccCcCCCCCC
Q 002676 839 ILKCGVCFDRPKEVVITKCF--HL---FCNPCIQRNLEIR-HRKCPGCGTAFGQ 886 (894)
Q Consensus 839 ~l~C~iC~~~~~~~v~~~Cg--H~---fC~~C~~~~~~~~-~~~CP~C~~~~~~ 886 (894)
.-.|-||.+... +...||. .. .=.+|+.+|+... ...||.|+.+|.-
T Consensus 8 ~~~CRIC~~~~~-~~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i 60 (162)
T PHA02825 8 DKCCWICKDEYD-VVTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNI 60 (162)
T ss_pred CCeeEecCCCCC-CccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEE
Confidence 357999997754 3334554 22 1488999998854 4469999999864
No 352
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=78.34 E-value=92 Score=32.61 Aligned_cols=11 Identities=9% Similarity=-0.025 Sum_probs=5.9
Q ss_pred ccccccccccC
Q 002676 840 LKCGVCFDRPK 850 (894)
Q Consensus 840 l~C~iC~~~~~ 850 (894)
..++||+.++.
T Consensus 174 ~~~~I~~~~lp 184 (302)
T PF10186_consen 174 SEYTICGLPLP 184 (302)
T ss_pred CCeeecCcccC
Confidence 44556765443
No 353
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=78.33 E-value=30 Score=26.90 Aligned_cols=12 Identities=33% Similarity=0.421 Sum_probs=4.5
Q ss_pred HHHHHHHHHHhH
Q 002676 618 IIELVAKLDASE 629 (894)
Q Consensus 618 l~~l~~~~~~~~ 629 (894)
+..|+..++.+.
T Consensus 7 ~~~Lr~rLd~~~ 18 (69)
T PF14197_consen 7 IATLRNRLDSLT 18 (69)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 354
>COG4306 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=78.23 E-value=1.1 Score=37.96 Aligned_cols=25 Identities=24% Similarity=0.737 Sum_probs=19.7
Q ss_pred cccHhHHhHhhccCCCCccCcCCCCCCCC
Q 002676 860 LFCNPCIQRNLEIRHRKCPGCGTAFGQSD 888 (894)
Q Consensus 860 ~fC~~C~~~~~~~~~~~CP~C~~~~~~~d 888 (894)
-||..|-...+. .||+|.+++...+
T Consensus 29 afcskcgeati~----qcp~csasirgd~ 53 (160)
T COG4306 29 AFCSKCGEATIT----QCPICSASIRGDY 53 (160)
T ss_pred HHHhhhchHHHh----cCCccCCcccccc
Confidence 489999887766 4999999887654
No 355
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=78.12 E-value=1.1e+02 Score=33.25 Aligned_cols=41 Identities=17% Similarity=0.151 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002676 673 QVAERDDLNIKLVSESVKTKQVQSFLLSEKQALARQLQQIN 713 (894)
Q Consensus 673 ~l~~~~~~~~~l~~e~~~~~~~~~~l~~e~~~l~~~l~~l~ 713 (894)
+..+++..+..+..-+...+..+.+-..++..|.-++..+.
T Consensus 384 EKnd~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k 424 (527)
T PF15066_consen 384 EKNDIEKTLQNLQEALANTQKHLQESRNEKETLQLELKKIK 424 (527)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 33444444444444444444444444444444444444333
No 356
>COG1675 TFA1 Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=77.83 E-value=2.9 Score=39.10 Aligned_cols=35 Identities=23% Similarity=0.484 Sum_probs=23.0
Q ss_pred cccccccccccCCcccccCCCcccHhHHhHhhccCCCCccCcCCCCCCCCc
Q 002676 839 ILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDV 889 (894)
Q Consensus 839 ~l~C~iC~~~~~~~v~~~CgH~fC~~C~~~~~~~~~~~CP~C~~~~~~~d~ 889 (894)
.+.||.|+.++.- +.-.. -...||.||......|-
T Consensus 113 ~y~C~~~~~r~sf---------------deA~~-~~F~Cp~Cg~~L~~~d~ 147 (176)
T COG1675 113 YYVCPNCHVKYSF---------------DEAME-LGFTCPKCGEDLEEYDS 147 (176)
T ss_pred ceeCCCCCCcccH---------------HHHHH-hCCCCCCCCchhhhccc
Confidence 4889998877651 11112 24789999998876653
No 357
>PHA02862 5L protein; Provisional
Probab=77.76 E-value=1.9 Score=37.97 Aligned_cols=45 Identities=22% Similarity=0.363 Sum_probs=32.1
Q ss_pred ccccccccccCCcccccCCCc-----ccHhHHhHhhccC-CCCccCcCCCCC
Q 002676 840 LKCGVCFDRPKEVVITKCFHL-----FCNPCIQRNLEIR-HRKCPGCGTAFG 885 (894)
Q Consensus 840 l~C~iC~~~~~~~v~~~CgH~-----fC~~C~~~~~~~~-~~~CP~C~~~~~ 885 (894)
-.|=||+..-.+. ..||+=. .=..|+..|+... ...||.|+.+|.
T Consensus 3 diCWIC~~~~~e~-~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~ 53 (156)
T PHA02862 3 DICWICNDVCDER-NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYN 53 (156)
T ss_pred CEEEEecCcCCCC-cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEE
Confidence 3589999876544 4666421 2589999999853 345999999885
No 358
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=77.70 E-value=1.4 Score=52.56 Aligned_cols=46 Identities=28% Similarity=0.613 Sum_probs=35.7
Q ss_pred ccccccccccCC-------cccccCCCcccHhHHhHhhccCCCCccCcCCCCC
Q 002676 840 LKCGVCFDRPKE-------VVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFG 885 (894)
Q Consensus 840 l~C~iC~~~~~~-------~v~~~CgH~fC~~C~~~~~~~~~~~CP~C~~~~~ 885 (894)
..|.||++...- +.+--||--.|..|..--.+..+..||.|++.+.
T Consensus 16 ~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~ 68 (1044)
T PLN02915 16 KTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYK 68 (1044)
T ss_pred chhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 579999987532 3445677778999997666667778999999987
No 359
>COG3058 FdhE Uncharacterized protein involved in formate dehydrogenase formation [Posttranslational modification, protein turnover, chaperones]
Probab=77.38 E-value=0.99 Score=44.46 Aligned_cols=46 Identities=20% Similarity=0.428 Sum_probs=31.7
Q ss_pred cccccccccccccCCcccc----cCCCcc--cHhHHhHhhccCCCCccCcCCC
Q 002676 837 KAILKCGVCFDRPKEVVIT----KCFHLF--CNPCIQRNLEIRHRKCPGCGTA 883 (894)
Q Consensus 837 ~~~l~C~iC~~~~~~~v~~----~CgH~f--C~~C~~~~~~~~~~~CP~C~~~ 883 (894)
...-.||+|+..+...++. .=|-.| |+-|...|.-- ..||-.|+..
T Consensus 183 e~~~~CPvCGS~PvaSmV~~g~~~~GlRYL~CslC~teW~~V-R~KC~nC~~t 234 (308)
T COG3058 183 ESRQYCPVCGSMPVASMVQIGETEQGLRYLHCSLCETEWHYV-RVKCSNCEQS 234 (308)
T ss_pred cccccCCCcCCCCcceeeeecCccccchhhhhhhHHHHHHHH-HHHhcccccc
Confidence 3456899999877653332 233344 99999999774 3579999854
No 360
>PLN02400 cellulose synthase
Probab=77.31 E-value=1.2 Score=53.16 Aligned_cols=46 Identities=26% Similarity=0.616 Sum_probs=34.8
Q ss_pred ccccccccccCC-------cccccCCCcccHhHHhHhhccCCCCccCcCCCCC
Q 002676 840 LKCGVCFDRPKE-------VVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFG 885 (894)
Q Consensus 840 l~C~iC~~~~~~-------~v~~~CgH~fC~~C~~~~~~~~~~~CP~C~~~~~ 885 (894)
-.|.||++...- +.+--||--.|..|..---+..+..||.|++.+.
T Consensus 37 qiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYk 89 (1085)
T PLN02400 37 QICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYR 89 (1085)
T ss_pred ceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCccc
Confidence 389999987533 3444677778999996665566777999999987
No 361
>PF10164 DUF2367: Uncharacterized conserved protein (DUF2367); InterPro: IPR019317 This is a highly conserved set of proteins which contains three pairs of cysteine residues within a length of 42 amino acids and is rich in proline residues towards the N terminus. It includes a membrane protein that has been found to be highly expressed in the mouse brain and consequently, several members have been assigned as brain protein i3 (Bri3). Their function is unknown.
Probab=77.14 E-value=0.67 Score=37.62 Aligned_cols=37 Identities=30% Similarity=0.550 Sum_probs=23.1
Q ss_pred cccccccccCCcc-----------cccCCCcccHhHHhHhhccCCCCccCcCCCC
Q 002676 841 KCGVCFDRPKEVV-----------ITKCFHLFCNPCIQRNLEIRHRKCPGCGTAF 884 (894)
Q Consensus 841 ~C~iC~~~~~~~v-----------~~~CgH~fC~~C~~~~~~~~~~~CP~C~~~~ 884 (894)
.|+.|....-+.. ..++|=++|..+ |.++|+.|+..|
T Consensus 51 gCp~CrvG~le~~ft~~Gi~~AI~fFPiGilcc~~~-------r~~rC~nCG~~f 98 (98)
T PF10164_consen 51 GCPACRVGVLEDSFTCCGILCAIFFFPIGILCCLAM-------RERRCSNCGATF 98 (98)
T ss_pred CCCCCceeeecccccHHHHHHHHHHHhhHHHHhhhc-------CccccCCCCccC
Confidence 6888885433322 224554444433 778999999877
No 362
>PRK10869 recombination and repair protein; Provisional
Probab=77.13 E-value=1.5e+02 Score=34.32 Aligned_cols=9 Identities=0% Similarity=-0.086 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 002676 611 LSAAEAEII 619 (894)
Q Consensus 611 i~~le~el~ 619 (894)
++-++-++.
T Consensus 187 ~d~l~fql~ 195 (553)
T PRK10869 187 KQLLQYQLK 195 (553)
T ss_pred HHHHHHHHH
Confidence 333333333
No 363
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=77.13 E-value=78 Score=31.13 Aligned_cols=53 Identities=19% Similarity=0.139 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHhccCCCCcccHHHHHHHHHHHHHHHHHHHH
Q 002676 533 IKSLKALIEKLQKDKLESQIMLDMYGQEGRDPRDLMEIKESERRAHSQAEVLKN 586 (894)
Q Consensus 533 l~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~l~~ 586 (894)
+..|+.+++.-...+.+++..+..+. +.++...-..+...+..+..+-.+|-.
T Consensus 179 F~rlK~ele~tk~Klee~QnelsAwk-FTPdS~tGK~LMAKCR~L~qENeElG~ 231 (330)
T KOG2991|consen 179 FLRLKGELEQTKDKLEEAQNELSAWK-FTPDSKTGKMLMAKCRTLQQENEELGH 231 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhheee-ecCCCcchHHHHHHHHHHHHHHHHHHh
Confidence 44555666666666666666665552 444444444556666666655555543
No 364
>PF03833 PolC_DP2: DNA polymerase II large subunit DP2; InterPro: IPR016033 DP2 is the large subunit of a two-subunit novel archaebacterial replicative DNA polymerase first characterised for Pyrococcus furiosus. The structure of DP2 appears to be organised as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit. This entry represents the N-terminal ~950 residue component of DP2.; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 3O59_X.
Probab=76.69 E-value=0.8 Score=52.73 Aligned_cols=46 Identities=22% Similarity=0.437 Sum_probs=0.0
Q ss_pred ccccccccccCCcccccCC-Cc----ccHhHHhHhhccCCCCccCcCCCCCCCC
Q 002676 840 LKCGVCFDRPKEVVITKCF-HL----FCNPCIQRNLEIRHRKCPGCGTAFGQSD 888 (894)
Q Consensus 840 l~C~iC~~~~~~~v~~~Cg-H~----fC~~C~~~~~~~~~~~CP~C~~~~~~~d 888 (894)
..||-|+..--...+-.|| |+ +|..|-...- ...||.|+..+....
T Consensus 656 r~Cp~Cg~~t~~~~Cp~CG~~T~~~~~Cp~C~~~~~---~~~C~~C~~~~~~~~ 706 (900)
T PF03833_consen 656 RRCPKCGKETFYNRCPECGSHTEPVYVCPDCGIEVE---EDECPKCGRETTSYS 706 (900)
T ss_dssp ------------------------------------------------------
T ss_pred ccCcccCCcchhhcCcccCCccccceeccccccccC---ccccccccccCcccc
Confidence 5899999765555556688 43 7999988763 448999998877543
No 365
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=76.59 E-value=2.8 Score=38.96 Aligned_cols=35 Identities=23% Similarity=0.357 Sum_probs=22.8
Q ss_pred ccccccccccccCCcccccCCCcccHhHHhHhhccCCCCccCcCCCCCCCC
Q 002676 838 AILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSD 888 (894)
Q Consensus 838 ~~l~C~iC~~~~~~~v~~~CgH~fC~~C~~~~~~~~~~~CP~C~~~~~~~d 888 (894)
.-+.||.|+.+|.--- -+. ....||.||.++..-|
T Consensus 108 ~~Y~Cp~c~~r~tf~e---------------A~~-~~F~Cp~Cg~~L~~~d 142 (158)
T TIGR00373 108 MFFICPNMCVRFTFNE---------------AME-LNFTCPRCGAMLDYLD 142 (158)
T ss_pred CeEECCCCCcEeeHHH---------------HHH-cCCcCCCCCCEeeecc
Confidence 3478999987765311 111 2678999999876544
No 366
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=76.54 E-value=1.5 Score=39.36 Aligned_cols=26 Identities=27% Similarity=0.779 Sum_probs=22.2
Q ss_pred CcccHhHHhHhhccCCCCccCcCCCCCCCC
Q 002676 859 HLFCNPCIQRNLEIRHRKCPGCGTAFGQSD 888 (894)
Q Consensus 859 H~fC~~C~~~~~~~~~~~CP~C~~~~~~~d 888 (894)
+-||..|-...+. .||.|+.++....
T Consensus 28 ~~fC~kCG~~tI~----~Cp~C~~~IrG~y 53 (158)
T PF10083_consen 28 EKFCSKCGAKTIT----SCPNCSTPIRGDY 53 (158)
T ss_pred HHHHHHhhHHHHH----HCcCCCCCCCCce
Confidence 5699999998876 5999999998764
No 367
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=76.22 E-value=1.2 Score=44.90 Aligned_cols=25 Identities=36% Similarity=0.849 Sum_probs=15.9
Q ss_pred cCCCcccHhHHhHhhccCCCCccCcC
Q 002676 856 KCFHLFCNPCIQRNLEIRHRKCPGCG 881 (894)
Q Consensus 856 ~CgH~fC~~C~~~~~~~~~~~CP~C~ 881 (894)
.|-|+||.+|--=.++ .-..||.|.
T Consensus 350 ~Ck~~FCldCDv~iHe-sLh~CpgCe 374 (378)
T KOG2807|consen 350 SCKNVFCLDCDVFIHE-SLHNCPGCE 374 (378)
T ss_pred hccceeeccchHHHHh-hhhcCCCcC
Confidence 5777788888433333 455688886
No 368
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.17 E-value=6.3 Score=33.97 Aligned_cols=30 Identities=23% Similarity=0.598 Sum_probs=16.6
Q ss_pred cccccccccc-ccCCcc---cccCCCcccHhHHh
Q 002676 838 AILKCGVCFD-RPKEVV---ITKCFHLFCNPCIQ 867 (894)
Q Consensus 838 ~~l~C~iC~~-~~~~~v---~~~CgH~fC~~C~~ 867 (894)
...+|.||.. .|.+-+ +..|.-.||..|--
T Consensus 64 ddatC~IC~KTKFADG~GH~C~YCq~r~CARCGG 97 (169)
T KOG3799|consen 64 DDATCGICHKTKFADGCGHNCSYCQTRFCARCGG 97 (169)
T ss_pred cCcchhhhhhcccccccCcccchhhhhHHHhcCC
Confidence 4579999995 465532 22233335555543
No 369
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=75.96 E-value=2.7 Score=39.87 Aligned_cols=35 Identities=26% Similarity=0.500 Sum_probs=23.0
Q ss_pred ccccccccccccCCcccccCCCcccHhHHhHhhccCCCCccCcCCCCCCCC
Q 002676 838 AILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSD 888 (894)
Q Consensus 838 ~~l~C~iC~~~~~~~v~~~CgH~fC~~C~~~~~~~~~~~CP~C~~~~~~~d 888 (894)
..+.||.|+.+|.-- .-+. ....||.||.++..-|
T Consensus 116 ~~Y~Cp~C~~rytf~---------------eA~~-~~F~Cp~Cg~~L~~~d 150 (178)
T PRK06266 116 MFFFCPNCHIRFTFD---------------EAME-YGFRCPQCGEMLEEYD 150 (178)
T ss_pred CEEECCCCCcEEeHH---------------HHhh-cCCcCCCCCCCCeecc
Confidence 347899988776531 1111 3678999999886544
No 370
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=75.91 E-value=35 Score=26.50 Aligned_cols=60 Identities=13% Similarity=0.122 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHH
Q 002676 221 KEEAKNLHEVMEIIHLKHKEYADQIENYISSHSVDQAEIQHLAGELEETMAELEESRRKL 280 (894)
Q Consensus 221 ~~e~~~l~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~e~~~l~~~l~~~~~el~~~~~~l 280 (894)
..++..|+..++.+..++......+..+....+.....+...-.++..+..+++.+...+
T Consensus 4 ea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el 63 (69)
T PF14197_consen 4 EAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKEL 63 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555544444444444444444444455554444443
No 371
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=75.66 E-value=1.1 Score=52.20 Aligned_cols=24 Identities=29% Similarity=0.660 Sum_probs=17.3
Q ss_pred CCcccHhHHhHhhccCCCCccCcCCC
Q 002676 858 FHLFCNPCIQRNLEIRHRKCPGCGTA 883 (894)
Q Consensus 858 gH~fC~~C~~~~~~~~~~~CP~C~~~ 883 (894)
|.++|+.|-... .-...||.|+..
T Consensus 461 ~~L~CH~Cg~~~--~~p~~Cp~Cgs~ 484 (730)
T COG1198 461 GQLRCHYCGYQE--PIPQSCPECGSE 484 (730)
T ss_pred CeeEeCCCCCCC--CCCCCCCCCCCC
Confidence 677899997652 234569999976
No 372
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.60 E-value=1.4e+02 Score=33.17 Aligned_cols=70 Identities=27% Similarity=0.379 Sum_probs=43.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002676 320 LQELKDSVEEAKILAADRLSEVEEAQQDNINLSKQLENLQNELNDDKYVHSSRLYNLVNDQLQHWNVEVERYKALTDSL 398 (894)
Q Consensus 320 ~~~le~~l~~~~~~~~~~~~el~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~~l~~~l~~l~~el~~~~~~~~~l 398 (894)
...+..++.+.+-.-..+..+..++..++..+++.+..++.. +..|..+.-.+..+..+..-+...++..
T Consensus 151 R~rlr~elKe~KfRE~RllseYSELEEENIsLQKqVs~LR~s---------QVEyEglkheikRleEe~elln~q~ee~ 220 (772)
T KOG0999|consen 151 RRRLRDELKEYKFREARLLSEYSELEEENISLQKQVSNLRQS---------QVEYEGLKHEIKRLEEETELLNSQLEEA 220 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhhh---------hhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777777777777777877777777777777654 2234445555555555544444444443
No 373
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=75.31 E-value=1.6 Score=37.18 Aligned_cols=30 Identities=17% Similarity=0.225 Sum_probs=21.8
Q ss_pred cccccccccccccccCC----cc-cccCCCcccHh
Q 002676 835 DCKAILKCGVCFDRPKE----VV-ITKCFHLFCNP 864 (894)
Q Consensus 835 ~l~~~l~C~iC~~~~~~----~v-~~~CgH~fC~~ 864 (894)
.+.....|+.|+.+|.+ |+ +-+||..|=..
T Consensus 5 elGtKR~Cp~CG~kFYDLnk~PivCP~CG~~~~~~ 39 (108)
T PF09538_consen 5 ELGTKRTCPSCGAKFYDLNKDPIVCPKCGTEFPPE 39 (108)
T ss_pred ccCCcccCCCCcchhccCCCCCccCCCCCCccCcc
Confidence 34555789999999855 65 44799988555
No 374
>PF07503 zf-HYPF: HypF finger; InterPro: IPR011125 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Proteins of the HypF family are involved in the maturation and regulation of hydrogenase []. In the N terminus they appear to have two zinc finger domains that are similar to those found in the DnaJ chaperone []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3TTD_A 3TSQ_A 3TTC_A 3TSP_A 3TTF_A 3TSU_A.
Probab=75.12 E-value=2.9 Score=27.28 Aligned_cols=25 Identities=24% Similarity=0.970 Sum_probs=15.3
Q ss_pred ccHhHHhHhhccCCC-------CccCcCCCCC
Q 002676 861 FCNPCIQRNLEIRHR-------KCPGCGTAFG 885 (894)
Q Consensus 861 fC~~C~~~~~~~~~~-------~CP~C~~~~~ 885 (894)
+|..|.........| .||.||-.+.
T Consensus 1 lC~~C~~Ey~~p~~RR~~~~~isC~~CGPr~~ 32 (35)
T PF07503_consen 1 LCDDCLKEYFDPSNRRFHYQFISCTNCGPRYS 32 (35)
T ss_dssp --HHHHHHHCSTTSTTTT-TT--BTTCC-SCC
T ss_pred CCHHHHHHHcCCCCCcccCcCccCCCCCCCEE
Confidence 478888877654333 3999998775
No 375
>PRK10869 recombination and repair protein; Provisional
Probab=74.85 E-value=1.7e+02 Score=33.86 Aligned_cols=35 Identities=14% Similarity=0.093 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 002676 602 EAEAACQQRLSAAEAEIIELVAKLDASERDVMELE 636 (894)
Q Consensus 602 ~~~~~l~~~i~~le~el~~l~~~~~~~~~~~~~l~ 636 (894)
.....+.+++..+..........++-+..++.++.
T Consensus 164 ~~~~~~~~~l~~l~~~~~~~~~~~d~l~fql~Ei~ 198 (553)
T PRK10869 164 QLWHQSCRDLAQHQQQSQERAARKQLLQYQLKELN 198 (553)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444443
No 376
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=74.72 E-value=55 Score=28.24 Aligned_cols=34 Identities=18% Similarity=0.188 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 002676 602 EAEAACQQRLSAAEAEIIELVAKLDASERDVMEL 635 (894)
Q Consensus 602 ~~~~~l~~~i~~le~el~~l~~~~~~~~~~~~~l 635 (894)
+....+..++..++..+..+..+...+...+.++
T Consensus 67 e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~ 100 (110)
T TIGR02338 67 EAIQELKEKKETLELRVKTLQRQEERLREQLKEL 100 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3434455555555555555544444444443333
No 377
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=74.66 E-value=1.2e+02 Score=32.27 Aligned_cols=48 Identities=19% Similarity=0.229 Sum_probs=18.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002676 621 LVAKLDASERDVMELEEAMKSKDREAEAYIAEMETIGQAFEDMQTQNQ 668 (894)
Q Consensus 621 l~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~~~~~~~~~~ 668 (894)
++.++...++....+..++.....+...+...+...+.++..++.++.
T Consensus 18 ~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~ 65 (459)
T KOG0288|consen 18 LNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENT 65 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333333444444333
No 378
>PRK11032 hypothetical protein; Provisional
Probab=74.59 E-value=73 Score=29.53 Aligned_cols=30 Identities=27% Similarity=0.461 Sum_probs=18.4
Q ss_pred cCCcccccCCCcccHhHHhHhhccCCCCccCcCCC
Q 002676 849 PKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTA 883 (894)
Q Consensus 849 ~~~~v~~~CgH~fC~~C~~~~~~~~~~~CP~C~~~ 883 (894)
+..-|+..|||..|..= ..+-..||.|+..
T Consensus 122 ~G~LvC~~Cg~~~~~~~-----p~~i~pCp~C~~~ 151 (160)
T PRK11032 122 LGNLVCEKCHHHLAFYT-----PEVLPLCPKCGHD 151 (160)
T ss_pred cceEEecCCCCEEEecC-----CCcCCCCCCCCCC
Confidence 34456778888665421 1234569999853
No 379
>COG1655 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=74.20 E-value=0.55 Score=44.63 Aligned_cols=14 Identities=29% Similarity=0.667 Sum_probs=11.5
Q ss_pred ccccccccccccCC
Q 002676 838 AILKCGVCFDRPKE 851 (894)
Q Consensus 838 ~~l~C~iC~~~~~~ 851 (894)
..+.||||...|+.
T Consensus 18 k~ieCPvC~tkFkk 31 (267)
T COG1655 18 KTIECPVCNTKFKK 31 (267)
T ss_pred ceeccCcccchhhh
Confidence 45899999998855
No 380
>PRK05978 hypothetical protein; Provisional
Probab=73.18 E-value=2.5 Score=38.29 Aligned_cols=32 Identities=28% Similarity=0.636 Sum_probs=23.0
Q ss_pred ccccccccccCCcccccCCCcccHhHHhHhhccCCCCccCcCCCCCCC
Q 002676 840 LKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQS 887 (894)
Q Consensus 840 l~C~iC~~~~~~~v~~~CgH~fC~~C~~~~~~~~~~~CP~C~~~~~~~ 887 (894)
.+||-|++ ||+| ..+++ -...||.|+..|...
T Consensus 34 grCP~CG~----------G~LF-----~g~Lk-v~~~C~~CG~~~~~~ 65 (148)
T PRK05978 34 GRCPACGE----------GKLF-----RAFLK-PVDHCAACGEDFTHH 65 (148)
T ss_pred CcCCCCCC----------Cccc-----ccccc-cCCCccccCCccccC
Confidence 57998884 5666 24555 345799999999865
No 381
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=73.05 E-value=1.5 Score=47.48 Aligned_cols=42 Identities=21% Similarity=0.365 Sum_probs=28.7
Q ss_pred cccccccccccccC-----CcccccCCCcccHhHHhHhhccCCCCccC
Q 002676 837 KAILKCGVCFDRPK-----EVVITKCFHLFCNPCIQRNLEIRHRKCPG 879 (894)
Q Consensus 837 ~~~l~C~iC~~~~~-----~~v~~~CgH~fC~~C~~~~~~~~~~~CP~ 879 (894)
..+..||.|.-.+. ++++-+|||-||..|.-.|.. .+..|+.
T Consensus 304 ~~wr~CpkC~~~ie~~~GCnhm~CrC~~~fcy~C~~~~~~-~~~~~~~ 350 (384)
T KOG1812|consen 304 KRWRQCPKCKFMIELSEGCNHMTCRCGHQFCYMCGGDWKT-HNGECYE 350 (384)
T ss_pred HhcCcCcccceeeeecCCcceEEeeccccchhhcCcchhh-CCccccC
Confidence 45678999985431 244446999999999988765 3444544
No 382
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=73.00 E-value=1.1 Score=32.89 Aligned_cols=12 Identities=33% Similarity=0.947 Sum_probs=5.6
Q ss_pred CccCcCCCCCCC
Q 002676 876 KCPGCGTAFGQS 887 (894)
Q Consensus 876 ~CP~C~~~~~~~ 887 (894)
.||.|+.+|+..
T Consensus 22 ~CPlC~r~l~~e 33 (54)
T PF04423_consen 22 CCPLCGRPLDEE 33 (54)
T ss_dssp E-TTT--EE-HH
T ss_pred cCCCCCCCCCHH
Confidence 688888887653
No 383
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=72.96 E-value=2.2e+02 Score=34.41 Aligned_cols=182 Identities=12% Similarity=0.123 Sum_probs=104.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhhhhhHHHHHHHHHhhcCCCCCCcccCCCcCccCCCCCCCCChhHHH
Q 002676 64 LDSQKHELQSLEAKIKELQEKQTSYDEMLITVNQLWNLFVDDLILLGVRAGGGSNVLQKLDSENQTRDSIPSGPPEDMFL 143 (894)
Q Consensus 64 l~~~~~~~~~L~~~~~~l~~k~~~~~~~l~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 143 (894)
|..+..++.+|+..-.+|+.....-..++..+...-..+..++..++.+.. ++
T Consensus 176 ll~~h~eL~~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~~rer~~---------------------------~~ 228 (1072)
T KOG0979|consen 176 LLQYHIELMDLREDEKSLEDKLTTKTEKLNRLEDEIDKLEKDVERVRERER---------------------------KK 228 (1072)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------HH
Confidence 666777788888888888888888888888888888888888887775543 11
Q ss_pred HHHhhhccccCCCcccchHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHhccChhhHHHHHHHHHHHHHHH
Q 002676 144 CRLLQVNSIESSSKDGILQYVEEALASRHSSARELMKFIEEVIDAQRVKTKSIAEAFHEKLSAEDAIIQLSKIDDMMKEE 223 (894)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~ee~l~~r~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~e 223 (894)
.++--.++..- -..|+ +........+.. .+.+.....++...+. ...+....|+....++...
T Consensus 229 ~~Ie~l~~k~~------~v~y~-~~~~ey~~~k~~-------~~r~k~~~r~l~k~~~---pi~~~~eeLe~~~~et~~~ 291 (1072)
T KOG0979|consen 229 SKIELLEKKKK------WVEYK-KHDREYNAYKQA-------KDRAKKELRKLEKEIK---PIEDKKEELESEKKETRSK 291 (1072)
T ss_pred HHHHHHHHhcc------ccchH-hhhHHHHHHHHH-------HHHHHHHHHHHHHhhh---hhhhhhhhHHhHHHhHHHH
Confidence 11100000000 00010 011111112222 2222222222222222 3345555666666666666
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhh
Q 002676 224 AKNLHEVMEIIHLKHKEYADQIENYISSHSVDQAEIQHLAGELEETMAELEESRRKLVSLKMQKDI 289 (894)
Q Consensus 224 ~~~l~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~e~~~l~~~l~~~~~el~~~~~~l~~~~~~~~~ 289 (894)
+......+.....+....-..+....+.+..+...+..+...-+.....+....+.+..++.+...
T Consensus 292 ~s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~~~~le~lk~~~~~rq~~i~~~~k~i~~~q~el~~ 357 (1072)
T KOG0979|consen 292 ISQKQRELNEALAKVQEKFEKLKEIEDEVEEKKNKLESLKKAAEKRQKRIEKAKKMILDAQAELQE 357 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 777777777777777777777777766666667777777777777777777777777666544443
No 384
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=72.80 E-value=2.3 Score=42.24 Aligned_cols=16 Identities=19% Similarity=0.436 Sum_probs=10.7
Q ss_pred ccccccccccCCcccc
Q 002676 840 LKCGVCFDRPKEVVIT 855 (894)
Q Consensus 840 l~C~iC~~~~~~~v~~ 855 (894)
..|+||+..|..|-++
T Consensus 188 c~C~iCGKaFSRPWLL 203 (279)
T KOG2462|consen 188 CECGICGKAFSRPWLL 203 (279)
T ss_pred cccccccccccchHHh
Confidence 4677777777765444
No 385
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=72.73 E-value=2.1 Score=42.67 Aligned_cols=30 Identities=30% Similarity=0.522 Sum_probs=19.0
Q ss_pred ccccCCCcccHhHH--hHhhccCCCCccCcCC
Q 002676 853 VITKCFHLFCNPCI--QRNLEIRHRKCPGCGT 882 (894)
Q Consensus 853 v~~~CgH~fC~~C~--~~~~~~~~~~CP~C~~ 882 (894)
|-+.|||+-.+.=- +..-..+.|+||+|+.
T Consensus 318 vYl~CGHV~G~H~WG~~e~~g~~~r~CPmC~~ 349 (429)
T KOG3842|consen 318 VYLNCGHVHGYHNWGVRENTGQRERECPMCRV 349 (429)
T ss_pred EEEeccccccccccccccccCcccCcCCeeee
Confidence 55689999755422 1222235778999985
No 386
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=72.62 E-value=1.4 Score=29.11 Aligned_cols=12 Identities=17% Similarity=0.481 Sum_probs=8.6
Q ss_pred ccccccccccCC
Q 002676 840 LKCGVCFDRPKE 851 (894)
Q Consensus 840 l~C~iC~~~~~~ 851 (894)
+.||-|...|.-
T Consensus 3 i~Cp~C~~~y~i 14 (36)
T PF13717_consen 3 ITCPNCQAKYEI 14 (36)
T ss_pred EECCCCCCEEeC
Confidence 578888877643
No 387
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=72.35 E-value=12 Score=31.96 Aligned_cols=9 Identities=11% Similarity=0.080 Sum_probs=5.5
Q ss_pred ccccccCCc
Q 002676 844 VCFDRPKEV 852 (894)
Q Consensus 844 iC~~~~~~~ 852 (894)
||..-|..+
T Consensus 85 ICn~~yG~~ 93 (110)
T PRK13169 85 ICNLHYGSR 93 (110)
T ss_pred ecHHHhCCc
Confidence 676666554
No 388
>COG3024 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=72.25 E-value=2.5 Score=31.35 Aligned_cols=14 Identities=29% Similarity=0.669 Sum_probs=10.6
Q ss_pred CCCccCcCCCCCCC
Q 002676 874 HRKCPGCGTAFGQS 887 (894)
Q Consensus 874 ~~~CP~C~~~~~~~ 887 (894)
.++||+|++++.-.
T Consensus 7 ~v~CP~Cgkpv~w~ 20 (65)
T COG3024 7 TVPCPTCGKPVVWG 20 (65)
T ss_pred cccCCCCCCccccc
Confidence 46799999887653
No 389
>PF14205 Cys_rich_KTR: Cysteine-rich KTR
Probab=71.96 E-value=1.5 Score=31.39 Aligned_cols=11 Identities=18% Similarity=0.700 Sum_probs=8.5
Q ss_pred ccccccccccc
Q 002676 838 AILKCGVCFDR 848 (894)
Q Consensus 838 ~~l~C~iC~~~ 848 (894)
.++.||+|+..
T Consensus 3 ~Wi~CP~CgnK 13 (55)
T PF14205_consen 3 EWILCPICGNK 13 (55)
T ss_pred eEEECCCCCCc
Confidence 46889999953
No 390
>PRK01343 zinc-binding protein; Provisional
Probab=71.59 E-value=2.9 Score=30.59 Aligned_cols=14 Identities=36% Similarity=0.888 Sum_probs=9.4
Q ss_pred CCCCccCcCCCCCC
Q 002676 873 RHRKCPGCGTAFGQ 886 (894)
Q Consensus 873 ~~~~CP~C~~~~~~ 886 (894)
...+||+|+++|..
T Consensus 8 p~~~CP~C~k~~~~ 21 (57)
T PRK01343 8 PTRPCPECGKPSTR 21 (57)
T ss_pred CCCcCCCCCCcCcC
Confidence 34568888877753
No 391
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=71.46 E-value=62 Score=27.33 Aligned_cols=29 Identities=10% Similarity=0.084 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 002676 663 MQTQNQHLLQQVAERDDLNIKLVSESVKT 691 (894)
Q Consensus 663 ~~~~~~~l~~~l~~~~~~~~~l~~e~~~~ 691 (894)
+..-+.........+.+....+...+..+
T Consensus 26 Le~mN~~~~~kY~~~~~~~~~l~~~~~~l 54 (99)
T PF10046_consen 26 LENMNKATSLKYKKMKDIAAGLEKNLEDL 54 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333444444333333333333
No 392
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=71.28 E-value=49 Score=26.11 Aligned_cols=48 Identities=15% Similarity=0.120 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhHHHHHHHH
Q 002676 216 IDDMMKEEAKNLHEVMEIIHLKHKEYADQIENYISSHSVDQAEIQHLA 263 (894)
Q Consensus 216 ~~~~l~~e~~~l~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~e~~~l~ 263 (894)
.+......+.-|+-.+..++.+...+..+...+......+..+...++
T Consensus 12 KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk 59 (79)
T PRK15422 12 KVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLK 59 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 333333444444444444444444444444444333333333333333
No 393
>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains.; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.
Probab=71.06 E-value=1.5 Score=27.96 Aligned_cols=25 Identities=36% Similarity=0.894 Sum_probs=13.5
Q ss_pred CcccHhHHhHhhcc---CCCCccCcCCC
Q 002676 859 HLFCNPCIQRNLEI---RHRKCPGCGTA 883 (894)
Q Consensus 859 H~fC~~C~~~~~~~---~~~~CP~C~~~ 883 (894)
|.||..|-...... ..+.||.|+..
T Consensus 3 ~rfC~~CG~~t~~~~~g~~r~C~~Cg~~ 30 (32)
T PF09297_consen 3 HRFCGRCGAPTKPAPGGWARRCPSCGHE 30 (32)
T ss_dssp TSB-TTT--BEEE-SSSS-EEESSSS-E
T ss_pred CcccCcCCccccCCCCcCEeECCCCcCE
Confidence 77888887766543 23459999864
No 394
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=71.01 E-value=2.3 Score=36.68 Aligned_cols=16 Identities=6% Similarity=-0.130 Sum_probs=10.5
Q ss_pred ccccccccccccccCC
Q 002676 836 CKAILKCGVCFDRPKE 851 (894)
Q Consensus 836 l~~~l~C~iC~~~~~~ 851 (894)
+.....||.|+.+|.+
T Consensus 6 lGtKr~Cp~cg~kFYD 21 (129)
T TIGR02300 6 LGTKRICPNTGSKFYD 21 (129)
T ss_pred hCccccCCCcCccccc
Confidence 3444678888877754
No 395
>PF10013 DUF2256: Uncharacterized protein conserved in bacteria (DUF2256); InterPro: IPR017136 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=70.95 E-value=2.3 Score=28.66 Aligned_cols=13 Identities=38% Similarity=1.009 Sum_probs=10.8
Q ss_pred CCCCccCcCCCCC
Q 002676 873 RHRKCPGCGTAFG 885 (894)
Q Consensus 873 ~~~~CP~C~~~~~ 885 (894)
....||+|+.+|.
T Consensus 7 p~K~C~~C~rpf~ 19 (42)
T PF10013_consen 7 PSKICPVCGRPFT 19 (42)
T ss_pred CCCcCcccCCcch
Confidence 4567999999996
No 396
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=70.79 E-value=1.3 Score=50.70 Aligned_cols=44 Identities=16% Similarity=0.185 Sum_probs=31.5
Q ss_pred ccccccccccCC--cccccCCCcccHhHHhHhhccC-----CCCccCcCCC
Q 002676 840 LKCGVCFDRPKE--VVITKCFHLFCNPCIQRNLEIR-----HRKCPGCGTA 883 (894)
Q Consensus 840 l~C~iC~~~~~~--~v~~~CgH~fC~~C~~~~~~~~-----~~~CP~C~~~ 883 (894)
--|-.|.....+ -++.+|||.||..|+..|+-.. ..+||.|+..
T Consensus 230 ~mC~~C~~tlfn~hw~C~~C~~~~Cl~C~r~~~p~~~~~e~a~k~~~~~~~ 280 (889)
T KOG1356|consen 230 EMCDRCETTLFNIHWRCPRCGFGVCLDCYRKWYPRLSKEEVAEKCEFSWLK 280 (889)
T ss_pred hhhhhhcccccceeEEccccCCeeeecchhhccccchHhHhhhhhhHHHHh
Confidence 468899876655 4677999999999999996211 1247776543
No 397
>PF13166 AAA_13: AAA domain
Probab=70.66 E-value=2.4e+02 Score=33.90 Aligned_cols=7 Identities=14% Similarity=-0.183 Sum_probs=3.6
Q ss_pred HHHHHHH
Q 002676 574 ERRAHSQ 580 (894)
Q Consensus 574 ~~~~~~~ 580 (894)
.|-+|++
T Consensus 257 ~CpfC~q 263 (712)
T PF13166_consen 257 TCPFCQQ 263 (712)
T ss_pred cCCCCCC
Confidence 4555555
No 398
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=70.64 E-value=1.2 Score=30.56 Aligned_cols=26 Identities=27% Similarity=0.447 Sum_probs=16.6
Q ss_pred ccCCCcccHhHHhHhhccCCCCccCcCC
Q 002676 855 TKCFHLFCNPCIQRNLEIRHRKCPGCGT 882 (894)
Q Consensus 855 ~~CgH~fC~~C~~~~~~~~~~~CP~C~~ 882 (894)
..|||.|-...--.- .....||.||.
T Consensus 9 ~~Cg~~fe~~~~~~~--~~~~~CP~Cg~ 34 (42)
T PF09723_consen 9 EECGHEFEVLQSISE--DDPVPCPECGS 34 (42)
T ss_pred CCCCCEEEEEEEcCC--CCCCcCCCCCC
Confidence 468888865542222 24567999998
No 399
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=70.48 E-value=2.3e+02 Score=33.48 Aligned_cols=16 Identities=38% Similarity=0.816 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHh
Q 002676 799 ERKKLEEELMEVNNKV 814 (894)
Q Consensus 799 ~~~~l~~~i~~l~~~i 814 (894)
.+.++..++..|+..|
T Consensus 301 ~r~kL~N~i~eLkGnI 316 (670)
T KOG0239|consen 301 ERRKLHNEILELKGNI 316 (670)
T ss_pred HHHHHHHHHHHhhcCc
Confidence 3344444455444444
No 400
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=70.10 E-value=2.7 Score=29.74 Aligned_cols=39 Identities=28% Similarity=0.754 Sum_probs=23.2
Q ss_pred ccccccccCC--cccccCCC-----cccHhHHhHhhcc-CCCCccCc
Q 002676 842 CGVCFDRPKE--VVITKCFH-----LFCNPCIQRNLEI-RHRKCPGC 880 (894)
Q Consensus 842 C~iC~~~~~~--~v~~~CgH-----~fC~~C~~~~~~~-~~~~CP~C 880 (894)
|-||++.... +.+.||+= ..=..|+..|+.. +..+||+|
T Consensus 1 CrIC~~~~~~~~~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEPLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS-EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCCceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 6688866433 56778752 1246799999885 45569998
No 401
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=69.96 E-value=1.8 Score=28.78 Aligned_cols=13 Identities=23% Similarity=0.498 Sum_probs=9.5
Q ss_pred ccccccccccCCc
Q 002676 840 LKCGVCFDRPKEV 852 (894)
Q Consensus 840 l~C~iC~~~~~~~ 852 (894)
+.||-|...|+-+
T Consensus 3 i~CP~C~~~f~v~ 15 (37)
T PF13719_consen 3 ITCPNCQTRFRVP 15 (37)
T ss_pred EECCCCCceEEcC
Confidence 5788888877543
No 402
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=69.80 E-value=2.3 Score=47.37 Aligned_cols=37 Identities=24% Similarity=0.558 Sum_probs=27.8
Q ss_pred cccccCCCcccHhHHhHhhcc-------------------------CCCCccCcCCCCCCCC
Q 002676 852 VVITKCFHLFCNPCIQRNLEI-------------------------RHRKCPGCGTAFGQSD 888 (894)
Q Consensus 852 ~v~~~CgH~fC~~C~~~~~~~-------------------------~~~~CP~C~~~~~~~d 888 (894)
+|.-.|||.||+.|...|+.. ....||.|-.++..+.
T Consensus 179 ~v~C~~g~~FC~~C~~~~H~p~~C~~~~~wl~k~~~~se~~~wi~~ntk~CP~c~~~iek~~ 240 (444)
T KOG1815|consen 179 EVDCGCGHEFCFACGEESHSPVSCPGAKKWLKKCRDDSETINWILANTKECPKCKVPIEKDG 240 (444)
T ss_pred ceeCCCCchhHhhccccccCCCcccchHHHHHhhhhhhhhhhhhhccCccCCCcccchhccC
Confidence 566689999999998877653 2335999988877654
No 403
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=69.15 E-value=1.3e+02 Score=30.24 Aligned_cols=47 Identities=23% Similarity=0.297 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 002676 774 SSDKEYEQIQRKTEDMRKELENERNERKKLEEELMEVNNKVAELTSE 820 (894)
Q Consensus 774 ~~~~el~~~~~~l~e~~~~l~~~~~~~~~l~~~i~~l~~~i~~l~~~ 820 (894)
.+.++|.+++.-|..+...+.....-+.++=.+|..-.++++.|-..
T Consensus 121 EARkEIkQLkQvieTmrssL~ekDkGiQKYFvDINiQN~KLEsLLqs 167 (305)
T PF15290_consen 121 EARKEIKQLKQVIETMRSSLAEKDKGIQKYFVDINIQNKKLESLLQS 167 (305)
T ss_pred HHHHHHHHHHHHHHHHHhhhchhhhhHHHHHhhhhhhHhHHHHHHHH
Confidence 44444444444444444333333333333333444444444444433
No 404
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=69.02 E-value=3.1 Score=48.10 Aligned_cols=25 Identities=28% Similarity=0.671 Sum_probs=15.8
Q ss_pred ccHhHHhHhhccCCCCccCcCCCCCC
Q 002676 861 FCNPCIQRNLEIRHRKCPGCGTAFGQ 886 (894)
Q Consensus 861 fC~~C~~~~~~~~~~~CP~C~~~~~~ 886 (894)
+|..|-...-. ..+.||.||.+++.
T Consensus 29 ~Cp~CG~~~~~-~~~fC~~CG~~~~~ 53 (645)
T PRK14559 29 PCPQCGTEVPV-DEAHCPNCGAETGT 53 (645)
T ss_pred cCCCCCCCCCc-ccccccccCCcccc
Confidence 46667655433 55668888877653
No 405
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=68.92 E-value=2.7 Score=27.27 Aligned_cols=9 Identities=56% Similarity=1.376 Sum_probs=7.5
Q ss_pred CCccCcCCC
Q 002676 875 RKCPGCGTA 883 (894)
Q Consensus 875 ~~CP~C~~~ 883 (894)
..||+|+.+
T Consensus 19 ~~CP~Cg~~ 27 (34)
T cd00729 19 EKCPICGAP 27 (34)
T ss_pred CcCcCCCCc
Confidence 479999985
No 406
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=68.54 E-value=4.4 Score=42.55 Aligned_cols=42 Identities=17% Similarity=0.409 Sum_probs=28.8
Q ss_pred HHHhcccccccccc--ccccc-CC-----cccccCCCcccHhHHhHhhcc
Q 002676 831 DEIKDCKAILKCGV--CFDRP-KE-----VVITKCFHLFCNPCIQRNLEI 872 (894)
Q Consensus 831 ee~~~l~~~l~C~i--C~~~~-~~-----~v~~~CgH~fC~~C~~~~~~~ 872 (894)
.-+..+.+...||- |..+- .+ ....+|.-.||..|..+|+..
T Consensus 265 k~l~~msdv~yCPr~~Cq~p~~~d~~~~l~~CskCnFaFCtlCk~t~HG~ 314 (445)
T KOG1814|consen 265 KTLELMSDVVYCPRACCQLPVKQDPGRALAICSKCNFAFCTLCKLTWHGV 314 (445)
T ss_pred HHHHhhcccccCChhhccCccccCchhhhhhhccCccHHHHHHHHhhcCC
Confidence 34555556678987 55442 12 445599999999999999763
No 407
>KOG1842 consensus FYVE finger-containing protein [General function prediction only]
Probab=67.46 E-value=5.9 Score=41.99 Aligned_cols=33 Identities=15% Similarity=0.283 Sum_probs=25.6
Q ss_pred ccccccccccccCC----cccccCCCcccHhHHhHhh
Q 002676 838 AILKCGVCFDRPKE----VVITKCFHLFCNPCIQRNL 870 (894)
Q Consensus 838 ~~l~C~iC~~~~~~----~v~~~CgH~fC~~C~~~~~ 870 (894)
....||+|...|.- ..+.=||-+.|.+|..-..
T Consensus 179 ~V~~CP~Ca~~F~l~rRrHHCRLCG~VmC~~C~k~iS 215 (505)
T KOG1842|consen 179 SVQFCPECANSFGLTRRRHHCRLCGRVMCRDCSKFIS 215 (505)
T ss_pred cccccccccchhhhHHHhhhhhhcchHHHHHHHHhcC
Confidence 34699999999843 4555699999999987553
No 408
>smart00290 ZnF_UBP Ubiquitin Carboxyl-terminal Hydrolase-like zinc finger.
Probab=67.31 E-value=3 Score=29.97 Aligned_cols=24 Identities=21% Similarity=0.437 Sum_probs=17.9
Q ss_pred cccccccccCCcccccCCCcccHh
Q 002676 841 KCGVCFDRPKEVVITKCFHLFCNP 864 (894)
Q Consensus 841 ~C~iC~~~~~~~v~~~CgH~fC~~ 864 (894)
.|..|.....--+.+.|||+||..
T Consensus 1 ~C~~C~~~~~l~~CL~C~~~~c~~ 24 (50)
T smart00290 1 RCSVCGTIENLWLCLTCGQVGCGR 24 (50)
T ss_pred CcccCCCcCCeEEecCCCCcccCC
Confidence 488888655555778899999944
No 409
>PHA02565 49 recombination endonuclease VII; Provisional
Probab=67.23 E-value=2 Score=38.62 Aligned_cols=45 Identities=22% Similarity=0.224 Sum_probs=25.4
Q ss_pred ccccccccccCCcccccC-CCcccHhHHhHhh-ccCCCCccCcCCCCCC
Q 002676 840 LKCGVCFDRPKEVVITKC-FHLFCNPCIQRNL-EIRHRKCPGCGTAFGQ 886 (894)
Q Consensus 840 l~C~iC~~~~~~~v~~~C-gH~fC~~C~~~~~-~~~~~~CP~C~~~~~~ 886 (894)
-.|+||...+..++...| -| |+.|.-.+. ..|.--||.|+...|.
T Consensus 21 G~CaiC~~~l~~~~~~~~vDH--DH~l~g~~TG~VRGLLC~~CN~~lG~ 67 (157)
T PHA02565 21 GICPLCKRELDGDVSKNHLDH--DHELNGPNAGRVRGLLCNLCNALEGQ 67 (157)
T ss_pred CcCCCCCCccCCCccccccCC--CCCCCCcccccccccCchhhhhhhhh
Confidence 579999988754432221 12 444432221 1255579999986653
No 410
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=67.10 E-value=1.1e+02 Score=28.54 Aligned_cols=73 Identities=14% Similarity=0.047 Sum_probs=39.8
Q ss_pred CCCCCCCccccchhHhhhhhHHHHHHHHH-------HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhhhhhHHHHHHHHH
Q 002676 38 TPSSPSSNKSVDSAVLQYQNQKLVQQLDS-------QKHELQSLEAKIKELQEKQTSYDEMLITVNQLWNLFVDDLILLG 110 (894)
Q Consensus 38 ~~~~~~~~~~~d~~~lq~~~~~l~~~l~~-------~~~~~~~L~~~~~~l~~k~~~~~~~l~~~~~~~~~l~~~l~~l~ 110 (894)
+|+|.+.+..+|+--+-=.+..|-++|.. .+.++...+..++.-.+.+..+........+.|.....++..+.
T Consensus 10 ~~Pp~~~~~~~~~e~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~~~~vL 89 (160)
T PF13094_consen 10 PFPPQKREDSFDYEQLLDRKRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKKAHPVL 89 (160)
T ss_pred CCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhh
Confidence 33344455566665455556666666664 44444444444444455555555556666666666665544433
No 411
>PF14369 zf-RING_3: zinc-finger
Probab=66.49 E-value=1.7 Score=28.47 Aligned_cols=26 Identities=23% Similarity=0.530 Sum_probs=16.7
Q ss_pred cccHhHHhHhhc----cCCCCccCcCCCCC
Q 002676 860 LFCNPCIQRNLE----IRHRKCPGCGTAFG 885 (894)
Q Consensus 860 ~fC~~C~~~~~~----~~~~~CP~C~~~~~ 885 (894)
-||+.|-....- .....||.|+..|-
T Consensus 3 ywCh~C~~~V~~~~~~~~~~~CP~C~~gFv 32 (35)
T PF14369_consen 3 YWCHQCNRFVRIAPSPDSDVACPRCHGGFV 32 (35)
T ss_pred EeCccCCCEeEeCcCCCCCcCCcCCCCcEe
Confidence 368888655432 12224999999885
No 412
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=66.42 E-value=2.5 Score=36.55 Aligned_cols=28 Identities=14% Similarity=0.267 Sum_probs=19.4
Q ss_pred cccHhHHhHhhccCC--CCccCcCCCCCCC
Q 002676 860 LFCNPCIQRNLEIRH--RKCPGCGTAFGQS 887 (894)
Q Consensus 860 ~fC~~C~~~~~~~~~--~~CP~C~~~~~~~ 887 (894)
..|..|-.++|..+. ..||.||..|...
T Consensus 10 r~Cp~cg~kFYDLnk~p~vcP~cg~~~~~~ 39 (129)
T TIGR02300 10 RICPNTGSKFYDLNRRPAVSPYTGEQFPPE 39 (129)
T ss_pred ccCCCcCccccccCCCCccCCCcCCccCcc
Confidence 347777777776432 3599999988654
No 413
>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species. It is likely to bind zinc via its four well-conserved cysteine residues.
Probab=66.41 E-value=1.6 Score=25.56 Aligned_cols=8 Identities=50% Similarity=1.314 Sum_probs=6.0
Q ss_pred CCccCcCC
Q 002676 875 RKCPGCGT 882 (894)
Q Consensus 875 ~~CP~C~~ 882 (894)
..||.||.
T Consensus 17 f~CPnCG~ 24 (24)
T PF07754_consen 17 FPCPNCGF 24 (24)
T ss_pred EeCCCCCC
Confidence 46999973
No 414
>COG1885 Uncharacterized protein conserved in archaea [Function unknown]
Probab=66.33 E-value=3 Score=34.16 Aligned_cols=14 Identities=36% Similarity=0.985 Sum_probs=11.2
Q ss_pred CCCCccCcCCCCCC
Q 002676 873 RHRKCPGCGTAFGQ 886 (894)
Q Consensus 873 ~~~~CP~C~~~~~~ 886 (894)
+...||.||.+|..
T Consensus 48 G~t~CP~Cg~~~e~ 61 (115)
T COG1885 48 GSTSCPKCGEPFES 61 (115)
T ss_pred ccccCCCCCCccce
Confidence 45679999999864
No 415
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=66.11 E-value=1.7e+02 Score=30.29 Aligned_cols=66 Identities=24% Similarity=0.241 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002676 647 EAYIAEMETIGQAFEDMQTQNQHLLQQVAERDDLNIKLVSESVKTKQVQSFLLSEKQALARQLQQI 712 (894)
Q Consensus 647 ~~l~~e~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~e~~~~~~~~~~l~~e~~~l~~~l~~l 712 (894)
..+..-++.-+.+...++.+++.+..++-...+-+.+...+...++.-+..+.++...++-++..+
T Consensus 88 r~i~es~~e~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l 153 (401)
T PF06785_consen 88 RKIRESVEERQQESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLDAL 153 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 334444444455555666666666666666655555555555555555555555444444444433
No 416
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=66.03 E-value=2.4 Score=25.31 Aligned_cols=13 Identities=38% Similarity=0.953 Sum_probs=10.3
Q ss_pred CCccCcCCCCCCC
Q 002676 875 RKCPGCGTAFGQS 887 (894)
Q Consensus 875 ~~CP~C~~~~~~~ 887 (894)
..||.|+..|...
T Consensus 3 ~~C~~CgR~F~~~ 15 (25)
T PF13913_consen 3 VPCPICGRKFNPD 15 (25)
T ss_pred CcCCCCCCEECHH
Confidence 4699999999654
No 417
>KOG2789 consensus Putative Zn-finger protein [General function prediction only]
Probab=66.00 E-value=3.1 Score=43.13 Aligned_cols=51 Identities=20% Similarity=0.481 Sum_probs=34.6
Q ss_pred ccccccccccccCC--cccccCCCcccHhHHhHhhcc-----------------------CCCCccCcCCCCCCCC
Q 002676 838 AILKCGVCFDRPKE--VVITKCFHLFCNPCIQRNLEI-----------------------RHRKCPGCGTAFGQSD 888 (894)
Q Consensus 838 ~~l~C~iC~~~~~~--~v~~~CgH~fC~~C~~~~~~~-----------------------~~~~CP~C~~~~~~~d 888 (894)
....||||+--|.. -.+.-|..+.|..|+-..... -.-+||.|.++...-.
T Consensus 73 r~~ecpicflyyps~~n~~rcC~~~Ic~ecf~~~~~~~~~~pt~~a~v~~~~~f~~~s~p~~~~cp~c~t~~~~ve 148 (482)
T KOG2789|consen 73 RKTECPICFLYYPSAKNLVRCCSETICGECFAPFGCYSFEKPTYDATVVKNLIFKRKSAPFYTPCPDCDTSWTRVE 148 (482)
T ss_pred ccccCceeeeecccccchhhhhccchhhhheecccCCCcccCccccccccccccccccccccccCCccCCccccee
Confidence 34789999977655 344468889999998655332 0135999998765443
No 418
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=65.95 E-value=3.6 Score=30.57 Aligned_cols=15 Identities=33% Similarity=0.942 Sum_probs=11.6
Q ss_pred CCCCccCcCCCCCCC
Q 002676 873 RHRKCPGCGTAFGQS 887 (894)
Q Consensus 873 ~~~~CP~C~~~~~~~ 887 (894)
.++.||.||+++..+
T Consensus 2 ~HkHC~~CG~~Ip~~ 16 (59)
T PF09889_consen 2 PHKHCPVCGKPIPPD 16 (59)
T ss_pred CCCcCCcCCCcCCcc
Confidence 356799999988764
No 419
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=65.76 E-value=5.2 Score=34.08 Aligned_cols=25 Identities=28% Similarity=0.704 Sum_probs=19.0
Q ss_pred CCcccHhHHhHhhcc--------CCCCccCcCC
Q 002676 858 FHLFCNPCIQRNLEI--------RHRKCPGCGT 882 (894)
Q Consensus 858 gH~fC~~C~~~~~~~--------~~~~CP~C~~ 882 (894)
.-.||..|+..++.. ..-.||.|+.
T Consensus 37 ~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crg 69 (105)
T PF10497_consen 37 RGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRG 69 (105)
T ss_pred cceehHhHHHHHHhhhHHHHhcCCceECCCCCC
Confidence 667999999888763 2335999885
No 420
>KOG2169 consensus Zn-finger transcription factor [Transcription]
Probab=65.74 E-value=4.1 Score=47.44 Aligned_cols=55 Identities=20% Similarity=0.277 Sum_probs=37.6
Q ss_pred cccccccccccccccCCccc-ccCCCcccHhHHhHhhcc---CCCCccCcCCCCCCCCc
Q 002676 835 DCKAILKCGVCFDRPKEVVI-TKCFHLFCNPCIQRNLEI---RHRKCPGCGTAFGQSDV 889 (894)
Q Consensus 835 ~l~~~l~C~iC~~~~~~~v~-~~CgH~fC~~C~~~~~~~---~~~~CP~C~~~~~~~d~ 889 (894)
.++-.|.|++|+.+..-|+. ..|.|+=|++=..-...+ ....||+|.+.+.-.++
T Consensus 302 ~~~vSL~CPl~~~Rm~~P~r~~~CkHlQcFD~~~~lq~n~~~pTW~CPVC~~~~~~e~l 360 (636)
T KOG2169|consen 302 SLRVSLNCPLSKMRMSLPARGHTCKHLQCFDALSYLQMNEQKPTWRCPVCQKAAPFEGL 360 (636)
T ss_pred cceeEecCCcccceeecCCcccccccceecchhhhHHhccCCCeeeCccCCccccccch
Confidence 34456899999988876543 478887777665444332 23359999999887664
No 421
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=65.47 E-value=1.2e+02 Score=28.48 Aligned_cols=26 Identities=15% Similarity=0.208 Sum_probs=9.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHH
Q 002676 740 YNSEDRHLAVNLETTKWELADAEKEL 765 (894)
Q Consensus 740 l~~e~~~~~~~~~~l~~~l~~l~~~l 765 (894)
++.+...+...-.....+|..|+..+
T Consensus 125 LE~E~~rLt~~Q~~ae~Ki~~LE~KL 150 (178)
T PF14073_consen 125 LEKEYLRLTATQSLAETKIKELEEKL 150 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333444443333
No 422
>PRK04406 hypothetical protein; Provisional
Probab=65.37 E-value=67 Score=25.45 Aligned_cols=19 Identities=32% Similarity=0.427 Sum_probs=6.9
Q ss_pred HHHHHHHHHHhHHHHHHHH
Q 002676 618 IIELVAKLDASERDVMELE 636 (894)
Q Consensus 618 l~~l~~~~~~~~~~~~~l~ 636 (894)
|.+|..++.-.+..+..|.
T Consensus 13 i~~LE~~lAfQE~tIe~LN 31 (75)
T PRK04406 13 INDLECQLAFQEQTIEELN 31 (75)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 423
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=65.11 E-value=1.5e+02 Score=29.39 Aligned_cols=16 Identities=13% Similarity=0.160 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 002676 607 CQQRLSAAEAEIIELV 622 (894)
Q Consensus 607 l~~~i~~le~el~~l~ 622 (894)
+..-|..++..+..++
T Consensus 28 l~q~ird~e~~l~~a~ 43 (221)
T PF04012_consen 28 LEQAIRDMEEQLRKAR 43 (221)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 424
>COG3677 Transposase and inactivated derivatives [DNA replication, recombination, and repair]
Probab=64.76 E-value=4.9 Score=35.79 Aligned_cols=44 Identities=20% Similarity=0.387 Sum_probs=26.4
Q ss_pred HHhccccccccccccccc-CCcccccCCCcccHhHHhHhhccCCCCccCcCCCCCCCC
Q 002676 832 EIKDCKAILKCGVCFDRP-KEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSD 888 (894)
Q Consensus 832 e~~~l~~~l~C~iC~~~~-~~~v~~~CgH~fC~~C~~~~~~~~~~~CP~C~~~~~~~d 888 (894)
.+........||.|.-.. .......+|| ...+||.|+..|.-.+
T Consensus 23 ~~~~~~~~~~cP~C~s~~~~k~g~~~~~~-------------qRyrC~~C~~tf~~~~ 67 (129)
T COG3677 23 AIRMQITKVNCPRCKSSNVVKIGGIRRGH-------------QRYKCKSCGSTFTVET 67 (129)
T ss_pred HHhhhcccCcCCCCCccceeeECCccccc-------------cccccCCcCcceeeec
Confidence 334445568899998655 2222334553 2346888888886543
No 425
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=64.61 E-value=1.3e+02 Score=28.38 Aligned_cols=24 Identities=17% Similarity=0.299 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 002676 761 AEKELKWLKSAVTSSDKEYEQIQR 784 (894)
Q Consensus 761 l~~~l~~~~~~~~~~~~el~~~~~ 784 (894)
|+.+...+...-.-++..+..+..
T Consensus 125 LE~E~~rLt~~Q~~ae~Ki~~LE~ 148 (178)
T PF14073_consen 125 LEKEYLRLTATQSLAETKIKELEE 148 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 426
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=64.52 E-value=2.1 Score=38.84 Aligned_cols=29 Identities=28% Similarity=0.466 Sum_probs=19.0
Q ss_pred CCcccccCCCcccHhHHhHhhccCCCCccCcCCC
Q 002676 850 KEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTA 883 (894)
Q Consensus 850 ~~~v~~~CgH~fC~~C~~~~~~~~~~~CP~C~~~ 883 (894)
..-++..|||..+..= ..+-+.||.|+..
T Consensus 111 G~l~C~~Cg~~~~~~~-----~~~l~~Cp~C~~~ 139 (146)
T PF07295_consen 111 GTLVCENCGHEVELTH-----PERLPPCPKCGHT 139 (146)
T ss_pred ceEecccCCCEEEecC-----CCcCCCCCCCCCC
Confidence 4456678888776642 1245679999854
No 427
>KOG1819 consensus FYVE finger-containing proteins [General function prediction only]
Probab=64.51 E-value=2 Score=45.42 Aligned_cols=31 Identities=19% Similarity=0.425 Sum_probs=23.0
Q ss_pred cccccccccC----CcccccCCCcccHhHHhHhhc
Q 002676 841 KCGVCFDRPK----EVVITKCFHLFCNPCIQRNLE 871 (894)
Q Consensus 841 ~C~iC~~~~~----~~v~~~CgH~fC~~C~~~~~~ 871 (894)
.|..|..+|. ...+..||.+||..|.-....
T Consensus 903 ~cmacq~pf~afrrrhhcrncggifcg~cs~asap 937 (990)
T KOG1819|consen 903 QCMACQMPFNAFRRRHHCRNCGGIFCGKCSCASAP 937 (990)
T ss_pred hhhhccCcHHHHHHhhhhcccCceeecccccCCCC
Confidence 6777777763 356778999999999765543
No 428
>PRK02119 hypothetical protein; Provisional
Probab=64.49 E-value=59 Score=25.62 Aligned_cols=20 Identities=35% Similarity=0.363 Sum_probs=7.4
Q ss_pred HHHHHHHHHHhHHHHHHHHH
Q 002676 618 IIELVAKLDASERDVMELEE 637 (894)
Q Consensus 618 l~~l~~~~~~~~~~~~~l~~ 637 (894)
|.+|..++.-.+..+..|..
T Consensus 11 i~~LE~rla~QE~tie~LN~ 30 (73)
T PRK02119 11 IAELEMKIAFQENLLEELNQ 30 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 429
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.18 E-value=2.2e+02 Score=30.92 Aligned_cols=10 Identities=10% Similarity=0.238 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 002676 801 KKLEEELMEV 810 (894)
Q Consensus 801 ~~l~~~i~~l 810 (894)
..++.+...|
T Consensus 505 qairqen~~L 514 (521)
T KOG1937|consen 505 QAIRQENDQL 514 (521)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 430
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=63.63 E-value=1.9e+02 Score=29.96 Aligned_cols=57 Identities=16% Similarity=0.042 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 002676 647 EAYIAEMETIGQAFEDMQTQNQHLLQQVAERDDLNIKLVSESVKTKQVQSFLLSEKQ 703 (894)
Q Consensus 647 ~~l~~e~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~e~~~~~~~~~~l~~e~~ 703 (894)
..+.+++-....-+..+......++.-+..++++...+...+..+.++..+...+..
T Consensus 109 qkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq 165 (401)
T PF06785_consen 109 QKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQ 165 (401)
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHH
Confidence 333333333333333444444444444444444444444444444444333333333
No 431
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=63.40 E-value=41 Score=31.76 Aligned_cols=6 Identities=33% Similarity=0.678 Sum_probs=2.1
Q ss_pred HHHHHh
Q 002676 809 EVNNKV 814 (894)
Q Consensus 809 ~l~~~i 814 (894)
.+..++
T Consensus 127 ~l~~kL 132 (169)
T PF07106_consen 127 ELEEKL 132 (169)
T ss_pred HHHHHH
Confidence 333333
No 432
>COG4338 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=63.25 E-value=2.3 Score=29.22 Aligned_cols=12 Identities=33% Similarity=0.966 Sum_probs=9.8
Q ss_pred CCCccCcCCCCC
Q 002676 874 HRKCPGCGTAFG 885 (894)
Q Consensus 874 ~~~CP~C~~~~~ 885 (894)
..-||+|+.||.
T Consensus 12 ~KICpvCqRPFs 23 (54)
T COG4338 12 DKICPVCQRPFS 23 (54)
T ss_pred hhhhhhhcCchH
Confidence 445999999996
No 433
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=63.02 E-value=1.9e+02 Score=29.93 Aligned_cols=11 Identities=27% Similarity=0.398 Sum_probs=4.3
Q ss_pred HHHHHHHHHHH
Q 002676 470 FRVMASALSKE 480 (894)
Q Consensus 470 l~~~~~~l~~~ 480 (894)
+......+...
T Consensus 25 l~~~~~sL~qe 35 (310)
T PF09755_consen 25 LRKRIESLQQE 35 (310)
T ss_pred HHHHHHHHHHH
Confidence 33333433333
No 434
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=62.81 E-value=6.8 Score=28.38 Aligned_cols=41 Identities=34% Similarity=0.715 Sum_probs=29.0
Q ss_pred ccccccccccC--C--cccccCCCcccHhHHhHhhccCCCCccC--cCCCCC
Q 002676 840 LKCGVCFDRPK--E--VVITKCFHLFCNPCIQRNLEIRHRKCPG--CGTAFG 885 (894)
Q Consensus 840 l~C~iC~~~~~--~--~v~~~CgH~fC~~C~~~~~~~~~~~CP~--C~~~~~ 885 (894)
-.|++|.+.|+ + +|.-.||=.+=..|-.. ...|-. |+.+|.
T Consensus 6 ~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~-----~g~C~~~~c~~~~~ 52 (54)
T PF14446_consen 6 CKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK-----AGGCINYSCGTGFE 52 (54)
T ss_pred ccChhhCCcccCCCCEEECCCCCCcccHHHHhh-----CCceEeccCCCCcc
Confidence 57999999994 3 44447887777777653 355766 888775
No 435
>PLN02939 transferase, transferring glycosyl groups
Probab=62.40 E-value=3.7e+02 Score=33.04 Aligned_cols=22 Identities=14% Similarity=0.066 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 002676 389 ERYKALTDSLLIDRSLVLRREK 410 (894)
Q Consensus 389 ~~~~~~~~~l~~e~~~l~~~~~ 410 (894)
+.+..+.+.++.+++-+..++.
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~ 180 (977)
T PLN02939 159 EKILTEKEALQGKINILEMRLS 180 (977)
T ss_pred HHHHHHHHHHHhhHHHHHHHhh
Confidence 3344444445555554444443
No 436
>KOG4517 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.26 E-value=3.1 Score=34.52 Aligned_cols=42 Identities=31% Similarity=0.501 Sum_probs=24.8
Q ss_pred cccccccccCCcccccCCCc-------ccHhHHhHhhccCCCCccCcCCCCC
Q 002676 841 KCGVCFDRPKEVVITKCFHL-------FCNPCIQRNLEIRHRKCPGCGTAFG 885 (894)
Q Consensus 841 ~C~iC~~~~~~~v~~~CgH~-------fC~~C~~~~~~~~~~~CP~C~~~~~ 885 (894)
.||.|.-.+-.-..+.||-. |...|.... |.+.||.|+..|.
T Consensus 69 ~~P~~g~g~lEdtftalgi~~ai~~fP~g~ic~~al---r~rrc~ncg~~f~ 117 (117)
T KOG4517|consen 69 GCPGCGYGVLEDTFTALGIFLAIILFPFGFICCFAL---RKRRCPNCGPTFA 117 (117)
T ss_pred CCCccccchhhhHHHHhhHHHHHHHhhhHHHhhHhh---hhccCCCcccccC
Confidence 56777655444333444421 344454444 7788999999874
No 437
>COG2816 NPY1 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]
Probab=61.54 E-value=3 Score=42.04 Aligned_cols=27 Identities=30% Similarity=0.698 Sum_probs=0.0
Q ss_pred CCcccHhHHhHhhccCCCC---ccCcCCCC
Q 002676 858 FHLFCNPCIQRNLEIRHRK---CPGCGTAF 884 (894)
Q Consensus 858 gH~fC~~C~~~~~~~~~~~---CP~C~~~~ 884 (894)
.|.||..|-.+.......- ||.|+..+
T Consensus 110 ~~RFCg~CG~~~~~~~~g~~~~C~~cg~~~ 139 (279)
T COG2816 110 SHRFCGRCGTKTYPREGGWARVCPKCGHEH 139 (279)
T ss_pred hCcCCCCCCCcCccccCceeeeCCCCCCcc
No 438
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=61.43 E-value=3 Score=38.58 Aligned_cols=22 Identities=27% Similarity=0.597 Sum_probs=0.0
Q ss_pred cHhHHhHhhccCCCCccCcCCC
Q 002676 862 CNPCIQRNLEIRHRKCPGCGTA 883 (894)
Q Consensus 862 C~~C~~~~~~~~~~~CP~C~~~ 883 (894)
|.-|-..+.......||+|+.|
T Consensus 137 C~vCGy~~~ge~P~~CPiCga~ 158 (166)
T COG1592 137 CPVCGYTHEGEAPEVCPICGAP 158 (166)
T ss_pred cCCCCCcccCCCCCcCCCCCCh
No 439
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=61.27 E-value=2.4e+02 Score=30.35 Aligned_cols=258 Identities=15% Similarity=0.133 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 002676 431 SRIERLEVQLQKSIIEKNDLGLKMEEAIQDSGRKDIKAEFRVMASALSKEMGMMEAQLNRWKETADEALSLREKAVSLKV 510 (894)
Q Consensus 431 ~~~~~l~~~l~~~~~el~~l~~~~~~~~~~~~~~~~~~el~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~l~~~~~~l~~ 510 (894)
.++..--..|......+..++.++........ ....+...+...+....................+.....++....
T Consensus 1 erl~~GL~KL~et~~~V~~m~~~L~~~~~~L~--~k~~e~e~ll~~i~~~~~~a~~~~~~~~~ee~~~~~~~~ei~~~~- 77 (344)
T PF12777_consen 1 ERLENGLDKLKETEEQVEEMQEELEEKQPELE--EKQKEAEELLEEIEKEQEEAEKKKAIVEEEEEEAEKQAKEIEEIK- 77 (344)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCHH-
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q ss_pred hhhhhhHHhHHhhhhhHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHhccCCCCcccHHHHHHHHHHHH---------HH
Q 002676 511 SLSAKTNEQKRLTDKCVEQMAEIKSLKALIEKLQKDKLESQ-IMLDMYGQEGRDPRDLMEIKESERRAH---------SQ 580 (894)
Q Consensus 511 ~l~~~~~e~~~l~~~~~~~~~~l~~l~~~~~~l~~~~~~l~-~~~~~~~~~~~~~~~i~~l~~~~~~~~---------~~ 580 (894)
......+......+..+...++.+. ..+..+.++...+..+......++-+. ..
T Consensus 78 ----------------~~a~~~L~~a~P~L~~A~~al~~l~k~di~Eiks~~~PP~~V~~V~~aV~iLl~~~~~~~k~~~ 141 (344)
T PF12777_consen 78 ----------------EEAEEELAEAEPALEEAQEALKSLDKSDISEIKSYANPPEAVKLVMEAVCILLGPKGKLPKDTS 141 (344)
T ss_dssp ----------------HHHHHHHHHHHHHHHHHHHHHHCS-HHHHHHHHHSSS--HHHHHHHHHHHHHTT-S-SEE---H
T ss_pred ----------------HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhCCCcHHHHHHHHHHhhHHhcccccccccc
Q ss_pred HHHHHHhhhhhhHHHHHhHHHHHHHHHH----------------------------------------------HHHHHH
Q 002676 581 AEVLKNALDEHSLELRVKAANEAEAACQ----------------------------------------------QRLSAA 614 (894)
Q Consensus 581 ~~~l~~~l~~~~~e~~~~~~~~~~~~l~----------------------------------------------~~i~~l 614 (894)
=...+..|..... ....+. -.....
T Consensus 142 W~~ak~~l~~~~~---------Fl~~L~~fd~~~i~~~~~~~l~~~~~~p~F~~e~v~~~S~Aa~~Lc~WV~A~~~Y~~v 212 (344)
T PF12777_consen 142 WESAKKLLSDSDN---------FLQRLKNFDKDNIPEATIKKLKKYLKNPDFNPEKVRKASKAAGSLCKWVRAMVKYYEV 212 (344)
T ss_dssp HHHHHCHHCSSTT---------HHHHHHHS-GGG--HHHHHHHHCTTTSTTSSHHHHHHH-TTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHH---------HHHHHHhhccccccHHHHHHHHHHhcCCCCCHHHHHHHhhcchHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 002676 615 EAEIIELVAKLDASERDVMELEEAMKSKDREAEAYIAEMETIGQAFEDMQTQNQHLLQQVAERDDLNIKLVSESVKTKQV 694 (894)
Q Consensus 615 e~el~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~e~~~~~~~ 694 (894)
...+.-++..+..++..+......+......+..+...+..+...+.....+...+..++...+..+.....=+..+..+
T Consensus 213 ~~~V~P~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E 292 (344)
T PF12777_consen 213 NKEVEPKRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGE 292 (344)
T ss_dssp CCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcch
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 002676 695 QSFLLSEKQALARQLQQINALV 716 (894)
Q Consensus 695 ~~~l~~e~~~l~~~l~~l~~~~ 716 (894)
...+...+..+...+..+-+..
T Consensus 293 ~~RW~~~~~~l~~~~~~l~GD~ 314 (344)
T PF12777_consen 293 KERWSEQIEELEEQLKNLVGDS 314 (344)
T ss_dssp HHCCHCHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHhcccHHHH
No 440
>PRK04179 rpl37e 50S ribosomal protein L37e; Reviewed
Probab=61.21 E-value=2.8 Score=30.98 Aligned_cols=23 Identities=30% Similarity=0.967 Sum_probs=0.0
Q ss_pred CcccHhHHhHhhccCCCCccCcC
Q 002676 859 HLFCNPCIQRNLEIRHRKCPGCG 881 (894)
Q Consensus 859 H~fC~~C~~~~~~~~~~~CP~C~ 881 (894)
|++|.-|-...+..+...|-.|+
T Consensus 17 Ht~CrRCG~~syh~qK~~CasCG 39 (62)
T PRK04179 17 HIRCRRCGRHSYNVRKKYCAACG 39 (62)
T ss_pred cchhcccCcccccccccchhhcC
No 441
>COG4260 Membrane protease subunit, stomatin/prohibitin family [Amino acid transport and metabolism]
Probab=61.16 E-value=3.6 Score=40.72 Aligned_cols=39 Identities=28% Similarity=0.625 Sum_probs=0.0
Q ss_pred ccccccccccccCCcccccCCCcccHhHHhHh-hccCCCC-ccCcCCCCC
Q 002676 838 AILKCGVCFDRPKEVVITKCFHLFCNPCIQRN-LEIRHRK-CPGCGTAFG 885 (894)
Q Consensus 838 ~~l~C~iC~~~~~~~v~~~CgH~fC~~C~~~~-~~~~~~~-CP~C~~~~~ 885 (894)
....|+-|...- -++.|| |...- +.+...+ ||.|+.+|.
T Consensus 305 ~t~~~~r~~k~n---fc~ncG------~~~t~~~~ng~a~fcp~cgq~~~ 345 (345)
T COG4260 305 ATWPCARCAKLN---FCLNCG------CGTTADFDNGKAKFCPECGQGFV 345 (345)
T ss_pred ccCcchhccccc---cccccC------cccccCCccchhhhChhhcCCCC
No 442
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms]
Probab=60.30 E-value=3.1 Score=51.03 Aligned_cols=52 Identities=21% Similarity=0.400 Sum_probs=0.0
Q ss_pred cccccccccCC-cccccCCCcccHhHHhHhhccCCCCccCcCCCCCCCCccccc
Q 002676 841 KCGVCFDRPKE-VVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDVRFVK 893 (894)
Q Consensus 841 ~C~iC~~~~~~-~v~~~CgH~fC~~C~~~~~~~~~~~CP~C~~~~~~~d~~~~~ 893 (894)
.|.-|...+.. ..+..||.+||..|-..... +.+.|--|+..+...++.++|
T Consensus 7 ~~~~~~t~~~~~~~~~~~g~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~ 59 (1598)
T KOG0230|consen 7 VCYDCDTSVNRRHHCRVCGRVFCSKCQDSPET-SIRVCNECRGQWEQGNVAPSD 59 (1598)
T ss_pred chhccccccccCCCCcccCceeccccCCCCcc-ceeehhhhhhhccccCCCCcc
No 443
>PRK09343 prefoldin subunit beta; Provisional
Probab=60.28 E-value=1.2e+02 Score=26.70 Aligned_cols=107 Identities=11% Similarity=0.027 Sum_probs=0.0
Q ss_pred hhHHhHHhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhccCCCCcccHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Q 002676 515 KTNEQKRLTDKCVEQMAEIKSLKALIEKLQKDKLESQIMLDMYGQEGRDPRDLMEIKESERRAHSQAEVLKNALDEHSLE 594 (894)
Q Consensus 515 ~~~e~~~l~~~~~~~~~~l~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~l~~~l~~~~~e 594 (894)
+..++......+..+...+..+......+...+.+.....+.+.....+ .......+.-
T Consensus 5 ~~~~~q~~~~~~q~lq~~l~~~~~q~~~le~q~~e~~~~~~EL~~L~~d---------------------~~VYk~VG~v 63 (121)
T PRK09343 5 IPPEVQAQLAQLQQLQQQLERLLQQKSQIDLELREINKALEELEKLPDD---------------------TPIYKIVGNL 63 (121)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc---------------------chhHHHhhHH
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhH
Q 002676 595 LRVKAANEAEAACQQRLSAAEAEIIELVAKLDASERDVMELEEAMKSK 642 (894)
Q Consensus 595 ~~~~~~~~~~~~l~~~i~~le~el~~l~~~~~~~~~~~~~l~~~l~~~ 642 (894)
+......+....+..++..++..|..+..+...+...+.++...+..+
T Consensus 64 lv~qd~~e~~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~l 111 (121)
T PRK09343 64 LVKVDKTKVEKELKERKELLELRSRTLEKQEKKLREKLKELQAKINEM 111 (121)
T ss_pred HhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 444
>PF15358 TSKS: Testis-specific serine kinase substrate
Probab=59.90 E-value=2.4e+02 Score=30.01 Aligned_cols=261 Identities=12% Similarity=0.148 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 002676 618 IIELVAKLDASERDVMELEEAMKSKDREAEAYIAEMETIGQAFEDMQTQNQHLLQQVAERDDLNIKLVSESVKTKQVQSF 697 (894)
Q Consensus 618 l~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~e~~~~~~~~~~ 697 (894)
|..|+.+-.....-+..|..+...+.+.++.-..+-++++.-...++.....+...+.+.+-.-..+...-.-++.++.-
T Consensus 127 ItSlKekt~~vnQHVq~LQseCsvlsEnLErrrQEaeELEgyCsqLk~nCrkVt~SVedaEiKtnvLkqnS~~LEekLr~ 206 (558)
T PF15358_consen 127 ITSLKEKTSRVNQHVQTLQSECSVLSENLERRRQEAEELEGYCSQLKENCRKVTRSVEDAEIKTNVLKQNSALLEEKLRY 206 (558)
T ss_pred hhhHHHhhHHHHHHHHHHHHHhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcccccchHHHHHHHHH
Q ss_pred HHHHHH-----HHHHHHHHHHHHHHH-------------------------------------------------HHHHH
Q 002676 698 LLSEKQ-----ALARQLQQINALVES-------------------------------------------------AKLRI 723 (894)
Q Consensus 698 l~~e~~-----~l~~~l~~l~~~~~~-------------------------------------------------~~~~~ 723 (894)
++.+.. .-+.++..++..++. ....+
T Consensus 207 lq~qLqdE~prrqe~e~qELeqkleagls~~~l~p~~~~~g~~~p~~s~~~p~~~~~l~~~~~~~~~rage~~~~seq~l 286 (558)
T PF15358_consen 207 LQQQLQDETPRRQEAEWQELEQKLEAGLSRSGLPPTADSTGCPGPPGSPEEPPRPRNLAPAGWGGGPRAGEGPELSEQEL 286 (558)
T ss_pred HHHHhcccCcchhhhhHHHHHHHHhhhhhhcCCCccccCCCCCCCCCCCCCCCCcccccccccccCCCCCCCccccHHhh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002676 724 LHAEEQMKACLTEALRYNSEDRHLAVNLETTKWELADAEKELKWLKSAVTSSDKEYEQIQRKTEDMRKELENERNERKKL 803 (894)
Q Consensus 724 ~~l~~~l~~~~~~~~~l~~e~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~el~~~~~~l~e~~~~l~~~~~~~~~l 803 (894)
...-.-+.++...+..+.....+-.-.....-+-+..+--.+..+--+-++.+.+-.+...-+.++....+.+-.-+++-
T Consensus 287 qk~~s~LEelRrevssLtarw~qEega~qEaLrlLgglggRldgflgqWERaQ~eq~q~ar~lqeLR~~~delct~vers 366 (558)
T PF15358_consen 287 QKVSSGLEELRREVSSLTARWHQEEGAVQEALRLLGGLGGRLDGFLGQWERAQREQAQTARGLQELRGRADELCTMVERS 366 (558)
T ss_pred cccCccHHHHHHHHHHHhhHHHHHHhHHHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q ss_pred HHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhcccccccccccccc--cCCcc-cccCCCcccHhHHhHhhcc--------
Q 002676 804 EEELMEVNNKVAELTSETGEAAIQKLQDEIKDCKAILKCGVCFDR--PKEVV-ITKCFHLFCNPCIQRNLEI-------- 872 (894)
Q Consensus 804 ~~~i~~l~~~i~~l~~~~~~~~~~~L~ee~~~l~~~l~C~iC~~~--~~~~v-~~~CgH~fC~~C~~~~~~~-------- 872 (894)
---+..|+..++.++++. ..++.+-.++...+.-..-++-.++ ...++ +-.||...-..-++..+..
T Consensus 367 avs~asLrseLeglgpvK--PilEel~Rq~~~~rrg~d~~~~ldr~~~gsCarC~sqgqqlstesLqqllerAltplvde 444 (558)
T PF15358_consen 367 AVSVASLRSELEGLGPVK--PILEELGRQLQNSRRGPDLSMNLDRSPQGSCARCASQGQQLSTESLQQLLERALTPLVDE 444 (558)
T ss_pred HhHHHHHHHHhhcccCcc--hHHHHHHHHHHhhccCCccccCCCcCCCCchHhHhhhhhhcCHHHHHHHHHHHhHHHHHH
Q ss_pred -----CCCCccCc
Q 002676 873 -----RHRKCPGC 880 (894)
Q Consensus 873 -----~~~~CP~C 880 (894)
-...||.|
T Consensus 445 vkqr~l~pacpsc 457 (558)
T PF15358_consen 445 VKQRGLPPACPSC 457 (558)
T ss_pred HHhcCCCCCChHH
No 445
>KOG3362 consensus Predicted BBOX Zn-finger protein [General function prediction only]
Probab=59.63 E-value=3.9 Score=35.89 Aligned_cols=32 Identities=22% Similarity=0.442 Sum_probs=0.0
Q ss_pred cccccccccCCcccccCCCcc-cHhHHhHhhccC
Q 002676 841 KCGVCFDRPKEVVITKCFHLF-CNPCIQRNLEIR 873 (894)
Q Consensus 841 ~C~iC~~~~~~~v~~~CgH~f-C~~C~~~~~~~~ 873 (894)
.|.||+ .+.-..++.||-.+ |-.|....-+||
T Consensus 120 fCaVCG-~~S~ysC~~CG~kyCsv~C~~~HneTR 152 (156)
T KOG3362|consen 120 FCAVCG-YDSKYSCVNCGTKYCSVRCLKTHNETR 152 (156)
T ss_pred hhhhcC-CCchhHHHhcCCceeechhhhhccccc
No 446
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=59.36 E-value=7.7 Score=28.56 Aligned_cols=38 Identities=29% Similarity=0.720 Sum_probs=0.0
Q ss_pred cccccccccCC----cccc--cCCCc-c--cHhHHhHhhccCCCCccCcC
Q 002676 841 KCGVCFDRPKE----VVIT--KCFHL-F--CNPCIQRNLEIRHRKCPGCG 881 (894)
Q Consensus 841 ~C~iC~~~~~~----~v~~--~CgH~-f--C~~C~~~~~~~~~~~CP~C~ 881 (894)
.|..|+..+.. +.+. .||.. . |..|-+.. ..-.||.||
T Consensus 9 ~CtSCg~~i~~~~~~~~F~CPnCG~~~I~RC~~CRk~~---~~Y~CP~CG 55 (59)
T PRK14890 9 KCTSCGIEIAPREKAVKFLCPNCGEVIIYRCEKCRKQS---NPYTCPKCG 55 (59)
T ss_pred cccCCCCcccCCCccCEeeCCCCCCeeEeechhHHhcC---CceECCCCC
No 447
>PRK04406 hypothetical protein; Provisional
Probab=59.20 E-value=89 Score=24.79 Aligned_cols=56 Identities=13% Similarity=0.025 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 002676 713 NALVESAKLRILHAEEQMKACLTEALRYNSEDRHLAVNLETTKWELADAEKELKWL 768 (894)
Q Consensus 713 ~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~e~~~~~~~~~~l~~~l~~l~~~l~~~ 768 (894)
...++.+...+..|+.++.-....++.|...+...+..+..+..++..+...+...
T Consensus 3 ~~~~~~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~ 58 (75)
T PRK04406 3 EKTIEQLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNM 58 (75)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 448
>KOG1818 consensus Membrane trafficking and cell signaling protein HRS, contains VHS and FYVE domains [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=59.15 E-value=2.9 Score=47.03 Aligned_cols=39 Identities=26% Similarity=0.682 Sum_probs=0.0
Q ss_pred cccccccc----CCcccccCCCcccHhHHhHhhcc-------CCCCccCc
Q 002676 842 CGVCFDRP----KEVVITKCFHLFCNPCIQRNLEI-------RHRKCPGC 880 (894)
Q Consensus 842 C~iC~~~~----~~~v~~~CgH~fC~~C~~~~~~~-------~~~~CP~C 880 (894)
|-.|-..| +...+..||-+||..|....+.. ..|.|-.|
T Consensus 168 C~rCr~~F~~~~rkHHCr~CG~vFC~qcss~s~~lP~~Gi~~~VRVCd~C 217 (634)
T KOG1818|consen 168 CLRCRVKFGLTNRKHHCRNCGQVFCGQCSSKSLTLPKLGIEKPVRVCDSC 217 (634)
T ss_pred cceeeeeeeeccccccccccchhhccCccccccCcccccccccceehhhh
No 449
>KOG4577 consensus Transcription factor LIM3, contains LIM and HOX domains [Transcription]
Probab=59.01 E-value=3.3 Score=40.78 Aligned_cols=47 Identities=21% Similarity=0.551 Sum_probs=0.0
Q ss_pred ccccccccccCCcccccCCCcccHhHHhHhhccCCCCccCcCCCCCCCCc
Q 002676 840 LKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDV 889 (894)
Q Consensus 840 l~C~iC~~~~~~~v~~~CgH~fC~~C~~~~~~~~~~~CP~C~~~~~~~d~ 889 (894)
+.|+-|...+.+.++..-|-+||..=..+++.+ ||-.|...+-+..|
T Consensus 61 LkCs~C~~qL~drCFsR~~s~yCkedFfKrfGT---KCsaC~~GIpPtqV 107 (383)
T KOG4577|consen 61 LKCSDCHDQLADRCFSREGSVYCKEDFFKRFGT---KCSACQEGIPPTQV 107 (383)
T ss_pred cchhhhhhHHHHHHhhcCCceeehHHHHHHhCC---cchhhcCCCChHHH
No 450
>PRK12495 hypothetical protein; Provisional
Probab=58.56 E-value=14 Score=35.50 Aligned_cols=57 Identities=18% Similarity=0.222 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhhhhhhhh-HHHHHHHHHHhcccccccccccccccCCcccccCCCcccHhH
Q 002676 804 EEELMEVNNKVAELTSETGE-AAIQKLQDEIKDCKAILKCGVCFDRPKEVVITKCFHLFCNPC 865 (894)
Q Consensus 804 ~~~i~~l~~~i~~l~~~~~~-~~~~~L~ee~~~l~~~l~C~iC~~~~~~~v~~~CgH~fC~~C 865 (894)
+.+-+.|+.+++.=...... ..+..|--....+.. ..|+.|+.++- ..=|-+||-.|
T Consensus 7 EaEREkLREKye~d~~~R~~~~~ma~lL~~gatmsa-~hC~~CG~PIp----a~pG~~~Cp~C 64 (226)
T PRK12495 7 EAEREKLREKYEQDEQKREATERMSELLLQGATMTN-AHCDECGDPIF----RHDGQEFCPTC 64 (226)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcccch-hhcccccCccc----CCCCeeECCCC
No 451
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=58.50 E-value=3.3 Score=41.84 Aligned_cols=45 Identities=20% Similarity=0.414 Sum_probs=0.0
Q ss_pred ccccccccccCC--------------------cccccCCCcccHhHHhHhhccCCCCccCcCCCC
Q 002676 840 LKCGVCFDRPKE--------------------VVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAF 884 (894)
Q Consensus 840 l~C~iC~~~~~~--------------------~v~~~CgH~fC~~C~~~~~~~~~~~CP~C~~~~ 884 (894)
..||||...... |....=|-.||+.|-..........||.|...|
T Consensus 291 ~eCpiC~ltLVss~hLARSyhhL~PL~~F~Eip~~~~~~~~~Cf~C~~~~~~~~~y~C~~Ck~~F 355 (378)
T KOG2807|consen 291 IECPICSLTLVSSPHLARSYHHLFPLKPFVEIPETEYNGSRFCFACQGELLSSGRYRCESCKNVF 355 (378)
T ss_pred ccCCccceeEecchHHHHHHHhhcCCcchhhccccccCCCcceeeeccccCCCCcEEchhcccee
No 452
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=58.31 E-value=2.2e+02 Score=29.10 Aligned_cols=190 Identities=12% Similarity=0.070 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhHHHHHHHHHHHHHH
Q 002676 688 SVKTKQVQSFLLSEKQALARQLQQINALVESAKLRILHAEEQMKACLTEAL---RYNSEDRHLAVNLETTKWELADAEKE 764 (894)
Q Consensus 688 ~~~~~~~~~~l~~e~~~l~~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~~~---~l~~e~~~~~~~~~~l~~~l~~l~~~ 764 (894)
...+.+...+|..++.....+..-|......--..+..|...+.++.+.+- ....-...++.++..+..+...|+.+
T Consensus 2 Vdd~QN~N~EL~kQiEIcqEENkiLdK~hRQKV~EVEKLsqTi~ELEEaiLagGaaaNavrdYqrq~~elneEkrtLeRE 81 (351)
T PF07058_consen 2 VDDVQNQNQELMKQIEICQEENKILDKMHRQKVLEVEKLSQTIRELEEAILAGGAAANAVRDYQRQVQELNEEKRTLERE 81 (351)
T ss_pred chhhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh--HHHHHHHHHHhcccccccc
Q 002676 765 LKWLKSAVTSSDKEYEQIQRKTEDMRKELENERNERKKLEEELMEVNNKVAELTSETGE--AAIQKLQDEIKDCKAILKC 842 (894)
Q Consensus 765 l~~~~~~~~~~~~el~~~~~~l~e~~~~l~~~~~~~~~l~~~i~~l~~~i~~l~~~~~~--~~~~~L~ee~~~l~~~l~C 842 (894)
+...+....++-.-+..--..-.+.-.-...|..++.-++.++..|+.++.-....... ..-++++--++.+...+.+
T Consensus 82 LARaKV~aNRVA~vvANEWKD~nDkvMPVKqWLEERR~lQgEmQ~LrDKLAiaERtAkaEaQLkeK~klRLK~LEe~Lk~ 161 (351)
T PF07058_consen 82 LARAKVSANRVATVVANEWKDENDKVMPVKQWLEERRFLQGEMQQLRDKLAIAERTAKAEAQLKEKLKLRLKVLEEGLKG 161 (351)
T ss_pred HHHhhhhhhhhhhhhcccccccCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q ss_pred cccccccCCcccccCCCcccHhHHhHhhccCCCCccCcCCCCCCCCcccccC
Q 002676 843 GVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDVRFVKI 894 (894)
Q Consensus 843 ~iC~~~~~~~v~~~CgH~fC~~C~~~~~~~~~~~CP~C~~~~~~~d~~~~~~ 894 (894)
+..+.....+... ....+|.-+..+|..+..+-++
T Consensus 162 ~~s~~~~~~~~~~-----------------s~~~gps~r~~lgg~~~~~~~~ 196 (351)
T PF07058_consen 162 SSSNSSRPTSEGK-----------------SPSNGPSRRQSLGGAENFSKLS 196 (351)
T ss_pred CCCCCCCCCcCCC-----------------CCCCCCccCcCCCCcccccccc
No 453
>KOG4218 consensus Nuclear hormone receptor betaFTZ-F1 [Transcription]
Probab=58.30 E-value=4.9 Score=40.74 Aligned_cols=38 Identities=26% Similarity=0.745 Sum_probs=0.0
Q ss_pred ccccccccCC--cccccCCCcccHhHHhHhhcc-----------------CCCCccCcC
Q 002676 842 CGVCFDRPKE--VVITKCFHLFCNPCIQRNLEI-----------------RHRKCPGCG 881 (894)
Q Consensus 842 C~iC~~~~~~--~v~~~CgH~fC~~C~~~~~~~-----------------~~~~CP~C~ 881 (894)
||||+++... -.++.|-- |..-.++...+ ....||.||
T Consensus 18 CPVCGDkVSGYHYGLLTCES--CKGFFKRTVQNnK~YtC~e~qnC~iDkTqRKRCP~CR 74 (475)
T KOG4218|consen 18 CPVCGDKVSGYHYGLLTCES--CKGFFKRTVQNNKQYTCSEEQNCHIDKTQRKRCPSCR 74 (475)
T ss_pred cccccCccccceeeeeehhh--hhhHHHHHhhcCcceecccccccccchHhhccCCchh
No 454
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=58.29 E-value=4.4 Score=27.06 Aligned_cols=32 Identities=22% Similarity=0.539 Sum_probs=0.0
Q ss_pred cccccccccccCCcccccCCCcccHhHHhHhhccCC--CCccCcCCCC
Q 002676 839 ILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRH--RKCPGCGTAF 884 (894)
Q Consensus 839 ~l~C~iC~~~~~~~v~~~CgH~fC~~C~~~~~~~~~--~~CP~C~~~~ 884 (894)
.+.||-|...|.-+ ...+.... ..||.|+..|
T Consensus 2 ~~~CP~C~~~~~v~--------------~~~~~~~~~~v~C~~C~~~~ 35 (38)
T TIGR02098 2 RIQCPNCKTSFRVV--------------DSQLGANGGKVRCGKCGHVW 35 (38)
T ss_pred EEECCCCCCEEEeC--------------HHHcCCCCCEEECCCCCCEE
No 455
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=58.23 E-value=2.9e+02 Score=30.44 Aligned_cols=240 Identities=15% Similarity=0.197 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHH--HHHhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-HHHHHHHHhHHH--
Q 002676 570 IKESERRAHSQAEV--LKNALDEHSLELRVKAANEAEAACQQRLSAAEAEIIELVAKLDASERDV-MELEEAMKSKDR-- 644 (894)
Q Consensus 570 l~~~~~~~~~~~~~--l~~~l~~~~~e~~~~~~~~~~~~l~~~i~~le~el~~l~~~~~~~~~~~-~~l~~~l~~~~~-- 644 (894)
++....++..++.+ +...-+.....+.+....+-...+..-+..+...+..++..+......+ ..+.........
T Consensus 44 I~Dp~~~v~yELed~~l~dikd~s~l~l~~~~ldevk~h~d~~~~~l~~~i~~lk~~l~~~~~~~~~~~~~~~~~~~~~~ 123 (424)
T PF03915_consen 44 IQDPKSGVFYELEDSNLSDIKDGSVLSLNEEPLDEVKKHIDSGIGGLSEEIEELKQELDEQQETILQRVKERQQSAAKPV 123 (424)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eecCCCCceeeecccccccccCCeeEEEecccccchhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccc
Q ss_pred ----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 002676 645 ----------------------------EAEAYIAEMETIGQAFEDMQTQNQHLLQQVAERDDLNIKLVSESVKTKQVQS 696 (894)
Q Consensus 645 ----------------------------~~~~l~~e~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~e~~~~~~~~~ 696 (894)
++..+..++..+.+-+......+......+...-..+........ ......
T Consensus 124 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~Ev~~LRreLavLRQl~~~~~~~~~~~i~~i~~ki~~~k~~s~~~~-~~~~R~ 202 (424)
T PF03915_consen 124 ARPAAAPPPSSAPSSSSSPQSTSKSDLKEVQSLRRELAVLRQLYSEFQSEVKESISSIREKIKKVKSASTNAS-GDSNRA 202 (424)
T ss_dssp -----------------------------------------------------------------------------HHH
T ss_pred cccccCCCCCcccccccCcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-HH
Q 002676 697 FLLSEKQALARQLQQINALVESAKLRILHAEEQMKACLTEALRYNSEDRHLAVNLETTKWELADAEKELKWLKSAVT-SS 775 (894)
Q Consensus 697 ~l~~e~~~l~~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~e~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~-~~ 775 (894)
.+......+......+-..++.++..++.+...+ ......-....+..+..++..+...+..+..-+...+.... -+
T Consensus 203 ~~~~~k~~L~~~sd~Ll~kVdDLQD~VE~LRkDV--~~RgvRp~~~qle~v~kdi~~a~~~L~~m~~~i~~~kp~WkKiW 280 (424)
T PF03915_consen 203 YMESGKKKLSEESDRLLTKVDDLQDLVEDLRKDV--VQRGVRPSPKQLETVAKDISRASKELKKMKEYIKTEKPIWKKIW 280 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHcCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHH
Q ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q 002676 776 DKEYEQIQRKTEDM---RKELENERNERKKLEEELMEVNN 812 (894)
Q Consensus 776 ~~el~~~~~~l~e~---~~~l~~~~~~~~~l~~~i~~l~~ 812 (894)
+.+++.+-.+=.-+ ..-+..+..+...+..-+..+..
T Consensus 281 E~EL~~V~eEQqfL~~QedL~~DL~eDl~k~~etf~lveq 320 (424)
T PF03915_consen 281 ESELQKVCEEQQFLKLQEDLLSDLKEDLKKASETFALVEQ 320 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 456
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional
Probab=58.18 E-value=3.5 Score=36.07 Aligned_cols=26 Identities=19% Similarity=0.370 Sum_probs=0.0
Q ss_pred CCcccHhHHhHhhccCCCC--ccCcCCC
Q 002676 858 FHLFCNPCIQRNLEIRHRK--CPGCGTA 883 (894)
Q Consensus 858 gH~fC~~C~~~~~~~~~~~--CP~C~~~ 883 (894)
+..+|..|-..+.-..... ||.|+.+
T Consensus 70 ~~~~C~~Cg~~~~~~~~~~~~CP~Cgs~ 97 (117)
T PRK00564 70 VELECKDCSHVFKPNALDYGVCEKCHSK 97 (117)
T ss_pred CEEEhhhCCCccccCCccCCcCcCCCCC
No 457
>KOG3726 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.16 E-value=5.7 Score=44.71 Aligned_cols=37 Identities=24% Similarity=0.551 Sum_probs=0.0
Q ss_pred cccccccccCC----cccccCCCcccHhHHhHhhccCCCCccCcC
Q 002676 841 KCGVCFDRPKE----VVITKCFHLFCNPCIQRNLEIRHRKCPGCG 881 (894)
Q Consensus 841 ~C~iC~~~~~~----~v~~~CgH~fC~~C~~~~~~~~~~~CP~C~ 881 (894)
+|-+|..+-.. +.++-|+-.||..|...+ ...||+|+
T Consensus 656 ~C~vcq~pedse~~v~rt~~C~~~~C~~c~~~~----~~~~~vC~ 696 (717)
T KOG3726|consen 656 TCKVCQLPEDSETDVCRTTFCYTPYCVACSLDY----ASISEVCG 696 (717)
T ss_pred HHHHhcCCcCccccccCccccCCcchHhhhhhh----hccCcccC
No 458
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=58.08 E-value=5.1 Score=30.45 Aligned_cols=47 Identities=21% Similarity=0.309 Sum_probs=0.0
Q ss_pred HHHHHhccccccccc--ccccccCC-------cccc-cCCCcccHhHHhHhhccCCCCc
Q 002676 829 LQDEIKDCKAILKCG--VCFDRPKE-------VVIT-KCFHLFCNPCIQRNLEIRHRKC 877 (894)
Q Consensus 829 L~ee~~~l~~~l~C~--iC~~~~~~-------~v~~-~CgH~fC~~C~~~~~~~~~~~C 877 (894)
++..+.......-|| -|...... .|.- .|||.||..|...|+. ...|
T Consensus 8 ~~~~i~~~~~~~~CP~~~C~~~~~~~~~~~~~~v~C~~C~~~fC~~C~~~~H~--~~~C 64 (64)
T smart00647 8 LESYVESNPDLKWCPAPDCSAAIIVTEEEGCNRVTCPKCGFSFCFRCKVPWHS--PVSC 64 (64)
T ss_pred HHHHHhcCCCccCCCCCCCcceEEecCCCCCCeeECCCCCCeECCCCCCcCCC--CCCC
No 459
>PRK00420 hypothetical protein; Validated
Probab=57.98 E-value=3.7 Score=35.14 Aligned_cols=27 Identities=22% Similarity=0.532 Sum_probs=0.0
Q ss_pred cHhHHhHhhccCCCC--ccCcCCCCCCCC
Q 002676 862 CNPCIQRNLEIRHRK--CPGCGTAFGQSD 888 (894)
Q Consensus 862 C~~C~~~~~~~~~~~--CP~C~~~~~~~d 888 (894)
|..|-...+..+... ||.|+..+...+
T Consensus 26 CP~Cg~pLf~lk~g~~~Cp~Cg~~~~v~~ 54 (112)
T PRK00420 26 CPVCGLPLFELKDGEVVCPVHGKVYIVKS 54 (112)
T ss_pred CCCCCCcceecCCCceECCCCCCeeeecc
No 460
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=57.96 E-value=2.1e+02 Score=28.70 Aligned_cols=213 Identities=16% Similarity=0.124 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhhhHH-hHHhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhccC
Q 002676 482 GMMEAQLNRWKETADEALSLREKAVSLKVSLSAKTNE-QKRLTDKCVEQMAEIKSLKALIEKLQKDKLESQIMLDMYGQE 560 (894)
Q Consensus 482 ~~l~~~~~~~~~~~~~l~~l~~~~~~l~~~l~~~~~e-~~~l~~~~~~~~~~l~~l~~~~~~l~~~~~~l~~~~~~~~~~ 560 (894)
+.++..+..+..+...|+.|..++...+..+..+..+ ...|..-...+-..|.....=++.......-..........+
T Consensus 7 prVq~eLe~LN~atd~IN~lE~~L~~ar~~fr~~l~e~~~kL~~~~kkLg~~I~karPYyea~~~a~~aq~e~q~Aa~~y 86 (239)
T PF05276_consen 7 PRVQEELEKLNQATDEINRLENELDEARATFRRLLSESTKKLNELAKKLGSCIEKARPYYEARRKAKEAQQEAQKAALQY 86 (239)
T ss_pred cHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred CCCcccHHHHHHHHHHHHHHHHHHH-HhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 002676 561 GRDPRDLMEIKESERRAHSQAEVLK-NALDEHSLELRVKAANEAEAACQQRLSAAEAEIIELVAKLDASERDVMELEEAM 639 (894)
Q Consensus 561 ~~~~~~i~~l~~~~~~~~~~~~~l~-~~l~~~~~e~~~~~~~~~~~~l~~~i~~le~el~~l~~~~~~~~~~~~~l~~~l 639 (894)
-............+..++..+..-. ..++..-++ .+..........+.+....+..-...-......+..+..|...+
T Consensus 87 erA~~~h~aAKe~v~laEq~l~~~~~~~~D~~wqE-mLn~A~~kVneAE~ek~~ae~eH~~~~~~~~~ae~~v~~Lek~l 165 (239)
T PF05276_consen 87 ERANSMHAAAKEMVALAEQSLMSDSNWTFDPAWQE-MLNHATQKVNEAEQEKTRAEREHQRRARIYNEAEQRVQQLEKKL 165 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcccccHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 002676 640 KSKDREAEAYIAEMETIGQAFEDMQTQNQHLLQQVAERDDLNIKLVSESVKTKQVQ 695 (894)
Q Consensus 640 ~~~~~~~~~l~~e~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~e~~~~~~~~ 695 (894)
+..-..-.-+-.....+...+......+..+...+.............+..+..++
T Consensus 166 kr~I~KSrPYfe~K~~~~~~l~~~k~~v~~Le~~v~~aK~~Y~~ALrnLE~ISeeI 221 (239)
T PF05276_consen 166 KRAIKKSRPYFELKAKFNQQLEEQKEKVEELEAKVKQAKSRYSEALRNLEQISEEI 221 (239)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 461
>TIGR03830 CxxCG_CxxCG_HTH putative zinc finger/helix-turn-helix protein, YgiT family. This model describes a family of predicted regulatory proteins with a conserved zinc finger/HTH architecture. The amino-terminal region contains a novel domain, featuring two CXXC motifs and occuring in a number of small bacterial proteins as well as in the present family. The carboxyl-terminal region consists of a helix-turn-helix domain, modeled by pfam01381. The predicted function is DNA binding and transcriptional regulation.
Probab=57.89 E-value=2.7 Score=37.55 Aligned_cols=36 Identities=22% Similarity=0.385 Sum_probs=0.0
Q ss_pred cccccc-----ccCCcccccCCCcccHhHHhHhhccCCCCccCcCCCC
Q 002676 842 CGVCFD-----RPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAF 884 (894)
Q Consensus 842 C~iC~~-----~~~~~v~~~CgH~fC~~C~~~~~~~~~~~CP~C~~~~ 884 (894)
||+|.. ......++-||+.+-. .+..+ .||.||..|
T Consensus 1 C~~C~~~~~~~~~~~~~~~~~G~~~~v-~~~~~------~C~~CGe~~ 41 (127)
T TIGR03830 1 CPICGSGELVRDVKDEPYTYKGESITI-GVPGW------YCPACGEEL 41 (127)
T ss_pred CCCCCCccceeeeecceEEEcCEEEEE-eeeee------ECCCCCCEE
No 462
>PRK11827 hypothetical protein; Provisional
Probab=57.64 E-value=5.1 Score=29.87 Aligned_cols=44 Identities=20% Similarity=0.139 Sum_probs=0.0
Q ss_pred hcccccccccccccccCCcccccCCCcccHhHHhHhhccCCCCccCcCCCCCCCCcccccC
Q 002676 834 KDCKAILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDVRFVKI 894 (894)
Q Consensus 834 ~~l~~~l~C~iC~~~~~~~v~~~CgH~fC~~C~~~~~~~~~~~CP~C~~~~~~~d~~~~~~ 894 (894)
..+..++.||+|...+.-..-. ..-.|+.|+..|--.|-.||.|
T Consensus 3 ~~LLeILaCP~ckg~L~~~~~~-----------------~~Lic~~~~laYPI~dgIPVlL 46 (60)
T PRK11827 3 HRLLEIIACPVCNGKLWYNQEK-----------------QELICKLDNLAFPLRDGIPVLL 46 (60)
T ss_pred hHHHhheECCCCCCcCeEcCCC-----------------CeEECCccCeeccccCCccccC
No 463
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=57.48 E-value=3.2e+02 Score=30.61 Aligned_cols=205 Identities=16% Similarity=0.152 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH--HHHHHhHHHHHHHHHHH
Q 002676 575 RRAHSQAEVLKNALDEHSLELRVKAANEAEAACQQRLSAAEAEIIELVAKLDASERDVMEL--EEAMKSKDREAEAYIAE 652 (894)
Q Consensus 575 ~~~~~~~~~l~~~l~~~~~e~~~~~~~~~~~~l~~~i~~le~el~~l~~~~~~~~~~~~~l--~~~l~~~~~~~~~l~~e 652 (894)
..+..-+..+-..+-......+.........-+..++..++.++.....++........-+ ..........+..+...
T Consensus 144 ~~A~~i~n~~~~~y~~~~~~~~~~~~~~~~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~i~~~~~~~~~~~~~l~~l~~~ 223 (444)
T TIGR03017 144 RFAATVANAFAQAYIDTNIELKVEPAQKAALWFVQQIAALREDLARAQSKLSAYQQEKGIVSSDERLDVERARLNELSAQ 223 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCcccchHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-HHHH
Q 002676 653 METIGQAFEDMQTQ------------------NQHLLQQVAERDDLNIKLVSESVKTKQVQSFLLSEKQALARQL-QQIN 713 (894)
Q Consensus 653 ~~~l~~~~~~~~~~------------------~~~l~~~l~~~~~~~~~l~~e~~~~~~~~~~l~~e~~~l~~~l-~~l~ 713 (894)
+............. +..+..++..++.++..+......-.-.+..+..++..+...+ ..+.
T Consensus 224 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~le~~l~~l~~~y~~~hP~v~~l~~~i~~l~~~l~~e~~ 303 (444)
T TIGR03017 224 LVAAQAQVMDASSKEGGSSGKDALPEVIANPIIQNLKTDIARAESKLAELSQRLGPNHPQYKRAQAEINSLKSQLNAEIK 303 (444)
T ss_pred HHHHHHHHHHHHHHHhccCCcccchhhhcChHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002676 714 ALVESAKLRILHAEEQMKACLTEALRYNSEDRHLAVNLETTKWELADAEKELKWLKSAVTSSDKEYEQIQ 783 (894)
Q Consensus 714 ~~~~~~~~~~~~l~~~l~~~~~~~~~l~~e~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~el~~~~ 783 (894)
.-...+......+......+...+..+...+..+... ..++..|+.++...+.....+-..+++..
T Consensus 304 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~----~~~~~~L~r~~~~~~~~y~~ll~r~~e~~ 369 (444)
T TIGR03017 304 KVTSSVGTNSRILKQREAELREALENQKAKVLELNRQ----RDEMSVLQRDVENAQRAYDAAMQRYTQTR 369 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 464
>KOG3475 consensus 60S ribosomal protein L37 [Translation, ribosomal structure and biogenesis]
Probab=57.48 E-value=4.1 Score=31.86 Aligned_cols=25 Identities=32% Similarity=0.891 Sum_probs=0.0
Q ss_pred CcccHhHHhHhhccCCCCccCcCCC
Q 002676 859 HLFCNPCIQRNLEIRHRKCPGCGTA 883 (894)
Q Consensus 859 H~fC~~C~~~~~~~~~~~CP~C~~~ 883 (894)
|+.|..|-...+......|..|+-|
T Consensus 16 htlC~RCG~~syH~QKstC~~CGYp 40 (92)
T KOG3475|consen 16 HTLCRRCGRRSYHIQKSTCSSCGYP 40 (92)
T ss_pred hHHHHHhCchhhhhhcccccccCCc
No 465
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=57.11 E-value=76 Score=24.65 Aligned_cols=52 Identities=13% Similarity=0.034 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 002676 718 SAKLRILHAEEQMKACLTEALRYNSEDRHLAVNLETTKWELADAEKELKWLK 769 (894)
Q Consensus 718 ~~~~~~~~l~~~l~~~~~~~~~l~~e~~~~~~~~~~l~~~l~~l~~~l~~~~ 769 (894)
.+...+..++.++.-....++.+...+......+..++..+..+...+..+.
T Consensus 1 ~le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 1 MLEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 466
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=56.97 E-value=72 Score=24.80 Aligned_cols=52 Identities=19% Similarity=0.350 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 002676 613 AAEAEIIELVAKLDASERDVMELEEAMKSKDREAEAYIAEMETIGQAFEDMQ 664 (894)
Q Consensus 613 ~le~el~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~~~~~~ 664 (894)
.++..|.+|..++.-.+..+..|...+......+..+...+..+...+.++.
T Consensus 1 ~le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 1 MLEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 467
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=56.97 E-value=4.2e+02 Score=31.93 Aligned_cols=137 Identities=10% Similarity=0.065 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 002676 619 IELVAKLDASERDVMELEEAMKSKDREAEAYIAEMETIGQAF--EDMQTQNQHLLQQVAERDDLNIKLVSESVKTKQVQS 696 (894)
Q Consensus 619 ~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~~--~~~~~~~~~l~~~l~~~~~~~~~l~~e~~~~~~~~~ 696 (894)
..+..+.......+.-+..++..+..++...+..+...+... -++..+......++.+++.++..+......+...+.
T Consensus 256 ~~l~~k~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~~~~d~~~ea~~~l~~~~~l~~ql~~l~~~~~~l~~~~~ 335 (726)
T PRK09841 256 QNIARQAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQRDSVDLNLEAKAVLEQIVNVDNQLNELTFREAEISQLYK 335 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 002676 697 FLLSEKQALARQLQQINALVESAKLRILH---AEEQMKACLTEALRYNSEDRHLAVNLETTK 755 (894)
Q Consensus 697 ~l~~e~~~l~~~l~~l~~~~~~~~~~~~~---l~~~l~~~~~~~~~l~~e~~~~~~~~~~l~ 755 (894)
.-.=....+..++..+..++..+...+.. .+..+..+..+.+..+.-+..+-...+.+.
T Consensus 336 ~~hP~v~~l~~~~~~L~~~~~~l~~~~~~~p~~e~~~~~L~R~~~~~~~lY~~lL~r~~e~~ 397 (726)
T PRK09841 336 KDHPTYRALLEKRQTLEQERKRLNKRVSAMPSTQQEVLRLSRDVEAGRAVYLQLLNRQQELS 397 (726)
T ss_pred ccCchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 468
>PRK00418 DNA gyrase inhibitor; Reviewed
Probab=56.95 E-value=8 Score=28.98 Aligned_cols=22 Identities=32% Similarity=0.540 Sum_probs=0.0
Q ss_pred ccCCCCccCcCCCCC---CCCcccc
Q 002676 871 EIRHRKCPGCGTAFG---QSDVRFV 892 (894)
Q Consensus 871 ~~~~~~CP~C~~~~~---~~d~~~~ 892 (894)
.....+||+|++++. .+.++|+
T Consensus 3 ~~~~v~CP~C~k~~~w~~~~~~rPF 27 (62)
T PRK00418 3 ETITVNCPTCGKPVEWGEISPFRPF 27 (62)
T ss_pred CCccccCCCCCCcccccCCCCcCCc
No 469
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=56.93 E-value=1.5e+02 Score=26.80 Aligned_cols=94 Identities=16% Similarity=0.178 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH---------------------------------
Q 002676 650 IAEMETIGQAFEDMQTQNQHLLQQVAERDDLNIKLVSESVKTKQVQS--------------------------------- 696 (894)
Q Consensus 650 ~~e~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~e~~~~~~~~~--------------------------------- 696 (894)
..++..+...+..++..+..+...+..+...+..+..-+..++.--.
T Consensus 5 ~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~~~e~l~~l~~~~~~~e~lvplg~~~yv~~~v~~~~kV~v~lG~ 84 (140)
T PRK03947 5 EQELEELAAQLQALQAQIEALQQQLEELQASINELDTAKETLEELKSKGEGKETLVPIGAGSFVKAKVKDKDKVIVSLGA 84 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCeEEEEcCCCcEEEEEecCCCeEEEEcCC
Q ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002676 697 ------FLLSEKQALARQLQQINALVESAKLRILHAEEQMKACLTEALRYNSE 743 (894)
Q Consensus 697 ------~l~~e~~~l~~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~e 743 (894)
.+...+..+...+..+...++.+...+..+...+..+...+..+..+
T Consensus 85 g~~vE~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~ 137 (140)
T PRK03947 85 GYSAEKDLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQQE 137 (140)
T ss_pred CEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 470
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=56.71 E-value=2.1e+02 Score=28.34 Aligned_cols=172 Identities=16% Similarity=0.143 Sum_probs=0.0
Q ss_pred HHHHHHhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHH-------
Q 002676 581 AEVLKNALDEHSLELRVKAANEAEAACQQRLSAAEAEIIELVAKLDASERDVMELEEAMKSKDREAEAYIAEM------- 653 (894)
Q Consensus 581 ~~~l~~~l~~~~~e~~~~~~~~~~~~l~~~i~~le~el~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~e~------- 653 (894)
+..+...+.+.... .++...+....+..-|..++..+..++..+.........++..+.........+....
T Consensus 3 f~Rl~~~~~a~~~~-~ld~~EDP~~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g 81 (221)
T PF04012_consen 3 FKRLKTLVKANINE-LLDKAEDPEKMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAG 81 (221)
T ss_pred HHHHHHHHHHHHHH-HHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002676 654 -----ETIGQAFEDMQTQNQHLLQQVAERDDLNIKLVSESVKTKQVQSFLLSEKQALARQLQQINALVESAKLRILHAEE 728 (894)
Q Consensus 654 -----~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~e~~~~~~~~~~l~~e~~~l~~~l~~l~~~~~~~~~~~~~l~~ 728 (894)
...-.....+...+..+...+......+..+...+..+...+..+......+............ +...+..+.
T Consensus 82 ~edLAr~al~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a~a~~~-~~~~~~~~~- 159 (221)
T PF04012_consen 82 REDLAREALQRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENAAKAQKK-VNEALASFS- 159 (221)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhccCC-
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 002676 729 QMKACLTEALRYNSEDRHLAVNLETTKW 756 (894)
Q Consensus 729 ~l~~~~~~~~~l~~e~~~~~~~~~~l~~ 756 (894)
.......+..++..+............
T Consensus 160 -~~~a~~~~er~e~ki~~~ea~a~a~~e 186 (221)
T PF04012_consen 160 -VSSAMDSFERMEEKIEEMEARAEASAE 186 (221)
T ss_pred -ccchHHHHHHHHHHHHHHHHHHHHHHH
No 471
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=56.48 E-value=3.9e+02 Score=31.40 Aligned_cols=202 Identities=14% Similarity=0.128 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHhHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002676 609 QRLSAAEAEIIELVAKLDAS-ERDVMELEEAMKSKDREA----------EAYIAEMETIGQAFEDMQTQNQHLLQQVAER 677 (894)
Q Consensus 609 ~~i~~le~el~~l~~~~~~~-~~~~~~l~~~l~~~~~~~----------~~l~~e~~~l~~~~~~~~~~~~~l~~~l~~~ 677 (894)
.++..+.-=+.+|+.-+... ..++..|-.++...-.-+ -.+--.+.-++.+...++.++.-+.+++.+.
T Consensus 334 ~KVrt~KYLLgELkaLVaeq~DsE~qRLitEvE~cislLPav~g~tniq~EIALA~QplrsENaqLrRrLrilnqqlreq 413 (861)
T PF15254_consen 334 EKVRTLKYLLGELKALVAEQEDSEVQRLITEVEACISLLPAVSGSTNIQVEIALAMQPLRSENAQLRRRLRILNQQLREQ 413 (861)
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhhhhhccccchhhhHhhhhhhhhhhHHHHHHHHHHHHHHHHH
Q ss_pred HHHH-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Q 002676 678 DDLN-----IKLVSESVKTKQVQSFLLSEKQALARQLQQINALVESAKLRILHAEEQMKACLTE----ALRYNSEDRHLA 748 (894)
Q Consensus 678 ~~~~-----~~l~~e~~~~~~~~~~l~~e~~~l~~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~----~~~l~~e~~~~~ 748 (894)
+..- ....-++..+..-.-.++.++......+..++...+.+-+.++...++-+.+... -..+.+......
T Consensus 414 e~~~k~~~~~~~n~El~sLqSlN~~Lq~ql~es~k~~e~lq~kneellk~~e~q~~Enk~~~~~~~ekd~~l~~~kq~~d 493 (861)
T PF15254_consen 414 EKAEKTSGSQDCNLELFSLQSLNMSLQNQLQESLKSQELLQSKNEELLKVIENQKEENKRLRKMFQEKDQELLENKQQFD 493 (861)
T ss_pred HhhcccCCCcccchhhHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002676 749 VNLETTKWELADAEKELKWLKSAVTSSDKEYEQIQRKTEDMRKELENERNERKKLEEELMEV 810 (894)
Q Consensus 749 ~~~~~l~~~l~~l~~~l~~~~~~~~~~~~el~~~~~~l~e~~~~l~~~~~~~~~l~~~i~~l 810 (894)
.+...++.++.+.-..+..++..+...+.+..-+.-.+.....++..++.-.+.|+.-+..+
T Consensus 494 ~e~~rik~ev~eal~~~k~~q~kLe~sekEN~iL~itlrQrDaEi~RL~eLtR~LQ~Sma~l 555 (861)
T PF15254_consen 494 IETTRIKIEVEEALVNVKSLQFKLEASEKENQILGITLRQRDAEIERLRELTRTLQNSMAKL 555 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
No 472
>PRK00420 hypothetical protein; Validated
Probab=56.45 E-value=4.4 Score=34.66 Aligned_cols=22 Identities=27% Similarity=0.300 Sum_probs=0.0
Q ss_pred cccccccccCCcccccCCCcccHhH
Q 002676 841 KCGVCFDRPKEVVITKCFHLFCNPC 865 (894)
Q Consensus 841 ~C~iC~~~~~~~v~~~CgH~fC~~C 865 (894)
.||+|+.++... +=|++||-.|
T Consensus 25 ~CP~Cg~pLf~l---k~g~~~Cp~C 46 (112)
T PRK00420 25 HCPVCGLPLFEL---KDGEVVCPVH 46 (112)
T ss_pred CCCCCCCcceec---CCCceECCCC
No 473
>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A ....
Probab=56.34 E-value=3.4 Score=24.89 Aligned_cols=13 Identities=46% Similarity=1.147 Sum_probs=0.0
Q ss_pred CCCCccCcCCCCC
Q 002676 873 RHRKCPGCGTAFG 885 (894)
Q Consensus 873 ~~~~CP~C~~~~~ 885 (894)
+...||.|+..|.
T Consensus 13 k~~~C~~C~k~F~ 25 (26)
T PF13465_consen 13 KPYKCPYCGKSFS 25 (26)
T ss_dssp SSEEESSSSEEES
T ss_pred CCCCCCCCcCeeC
No 474
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the PRK14892 putative transcription elongation factor Elf1; Provisional
Probab=55.86 E-value=6.5 Score=32.90 Aligned_cols=44 Identities=27% Similarity=0.336 Sum_probs=0.0
Q ss_pred cccccccccccccccCCcccccCCCcccHhHHhHhhccCCCCccCcCCCCCCCCccccc
Q 002676 835 DCKAILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDVRFVK 893 (894)
Q Consensus 835 ~l~~~l~C~iC~~~~~~~v~~~CgH~fC~~C~~~~~~~~~~~CP~C~~~~~~~d~~~~~ 893 (894)
.+-..+.||-|+...-.+-+.+ | ..++.||.|+..++. .|.+++
T Consensus 17 klpt~f~CP~Cge~~v~v~~~k-~-------------~~h~~C~~CG~y~~~-~V~~l~ 60 (99)
T PRK14892 17 KLPKIFECPRCGKVSISVKIKK-N-------------IAIITCGNCGLYTEF-EVPSVY 60 (99)
T ss_pred CCCcEeECCCCCCeEeeeecCC-C-------------cceEECCCCCCccCE-ECCccc
No 476
>COG2331 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=55.83 E-value=4.5 Score=31.09 Aligned_cols=30 Identities=23% Similarity=0.449 Sum_probs=0.0
Q ss_pred ccccCCCcccHhHHhHhhccCCCCccCcCCCC
Q 002676 853 VITKCFHLFCNPCIQRNLEIRHRKCPGCGTAF 884 (894)
Q Consensus 853 v~~~CgH~fC~~C~~~~~~~~~~~CP~C~~~~ 884 (894)
.++.|||.| +-++..-+..--.||.|+.+|
T Consensus 14 ~c~~cg~~~--dvvq~~~ddplt~ce~c~a~~ 43 (82)
T COG2331 14 ECTECGNRF--DVVQAMTDDPLTTCEECGARL 43 (82)
T ss_pred eecccchHH--HHHHhcccCccccChhhChHH
No 477
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=55.81 E-value=2.3e+02 Score=28.61 Aligned_cols=224 Identities=13% Similarity=0.124 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHchhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002676 381 LQHWNVEVERYKALTDSLLIDRSLVLRREKEINVRAESADAARNTVDDSESRIERLEVQLQKSIIEKNDLGLKMEEAIQD 460 (894)
Q Consensus 381 l~~l~~el~~~~~~~~~l~~e~~~l~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~l~~~l~~~~~el~~l~~~~~~~~~~ 460 (894)
|..-+..+.++......|......+...+.... ..--.....+......+..-...+...
T Consensus 1 i~~rr~sl~el~~h~~~L~~~N~~L~~~IqdtE--------------------~st~~~Vr~lLqqy~~~~~~i~~le~~ 60 (258)
T PF15397_consen 1 IRNRRTSLQELKKHEDFLTKLNKELIKEIQDTE--------------------DSTALKVRKLLQQYDIYRTAIDILEYS 60 (258)
T ss_pred CccHHHHHHHHHHHHHHHHHhhHHHHHHHHhHH--------------------hhHHHHHHHHHHHHHHHHHHHHHHHcc
Q ss_pred cC--ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhhhH----HhHHhhhhhHHHHHHHH
Q 002676 461 SG--RKDIKAEFRVMASALSKEMGMMEAQLNRWKETADEALSLREKAVSLKVSLSAKTN----EQKRLTDKCVEQMAEIK 534 (894)
Q Consensus 461 ~~--~~~~~~el~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~l~~~~~~l~~~l~~~~~----e~~~l~~~~~~~~~~l~ 534 (894)
.. ......++..........+..+ ..++..+...+......+..+.. +++.-.-.+..+...+.
T Consensus 61 ~~~~l~~ak~eLqe~eek~e~~l~~L----------q~ql~~l~akI~k~~~el~~L~TYkD~EYPvK~vqIa~L~rqlq 130 (258)
T PF15397_consen 61 NHKQLQQAKAELQEWEEKEESKLSKL----------QQQLEQLDAKIQKTQEELNFLSTYKDHEYPVKAVQIANLVRQLQ 130 (258)
T ss_pred ChHHHHHHHHHHHHHHHHHHhHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHhccCCCCcccHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHHHHHHHHHH
Q 002676 535 SLKALIEKLQKDKLESQIMLDMYGQEGRDPRDLMEIKESERRAHSQAEVLKNALDEHSLELRVKAANEAEAACQQRLSAA 614 (894)
Q Consensus 535 ~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~l~~~l~~~~~e~~~~~~~~~~~~l~~~i~~l 614 (894)
.++.....-..++..+ .......+.........++--.........+..-+-..
T Consensus 131 ~lk~~qqdEldel~e~--------------------------~~~el~~l~~~~q~k~~~il~~~~~k~~~~~~~~l~~~ 184 (258)
T PF15397_consen 131 QLKDSQQDELDELNEM--------------------------RQMELASLSRKIQEKKEEILSSAAEKTQSPMQPALLQR 184 (258)
T ss_pred HHHHHHHHHHHHHHHH--------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHH
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 002676 615 EAEIIELVAKLDASERDVMELEEAMKSKDREAEAYIAEMETIGQAF 660 (894)
Q Consensus 615 e~el~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~~ 660 (894)
-.+-..+...+......+..++..+..+..++..+.........-+
T Consensus 185 ~~~N~~m~kei~~~re~i~el~e~I~~L~~eV~~L~~~~~~~Re~i 230 (258)
T PF15397_consen 185 TLENQVMQKEIVQFREEIDELEEEIPQLRAEVEQLQAQAQDPREVI 230 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHh
No 478
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=55.73 E-value=6.7 Score=39.31 Aligned_cols=31 Identities=26% Similarity=0.635 Sum_probs=0.0
Q ss_pred CCCcccHhHHhHhhcc--------------------------------------CCCCccCcCCCCCCC
Q 002676 857 CFHLFCNPCIQRNLEI--------------------------------------RHRKCPGCGTAFGQS 887 (894)
Q Consensus 857 CgH~fC~~C~~~~~~~--------------------------------------~~~~CP~C~~~~~~~ 887 (894)
||-.||..|...++.- -.+.||.|+.|...+
T Consensus 342 Cgf~FCR~C~e~yh~geC~~~~~as~t~tc~y~vde~~a~~arwd~as~~TIk~tTkpCPkChvptErn 410 (446)
T KOG0006|consen 342 CGFAFCRECKEAYHEGECSAVFEASGTTTCAYRVDERAAEQARWDAASKETIKKTTKPCPKCHVPTERN 410 (446)
T ss_pred chhHhHHHHHhhhccccceeeeccccccceeeecChhhhhhhhhhhhhhhhhhhccCCCCCccCccccC
No 479
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=55.51 E-value=3e+02 Score=29.81 Aligned_cols=125 Identities=14% Similarity=0.197 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002676 660 FEDMQTQNQHLLQQVAERDDLNIKLVSESVKTKQVQSFLLSEKQALARQLQQINALVESAKLRILHAEEQMKACLTEALR 739 (894)
Q Consensus 660 ~~~~~~~~~~l~~~l~~~~~~~~~l~~e~~~~~~~~~~l~~e~~~l~~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~ 739 (894)
++.+..+...+...+...+.-+..+...-... .+..+..+.+.+..+-..+-.++..+...-..+...+..++....+
T Consensus 145 ~~~ld~e~~~~~~e~~~Y~~~l~~Le~~~~~~--~~~~~~~e~~~l~~eE~~L~q~lk~le~~~~~l~~~l~e~~~~~~~ 222 (447)
T KOG2751|consen 145 LNKLDKEVEDAEDEVDTYKACLQRLEQQNQDV--SEEDLLKELKNLKEEEERLLQQLEELEKEEAELDHQLKELEFKAER 222 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCccc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002676 740 YNSEDRHLAVNLETTKWELADAEKELKWLKSAVTSSDKEYEQIQRKT 786 (894)
Q Consensus 740 l~~e~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~el~~~~~~l 786 (894)
+.++.............+.-..+.+++.+..++.-...+++.+....
T Consensus 223 ~~e~~~~~~~ey~~~~~q~~~~~del~Sle~q~~~s~~qldkL~ktN 269 (447)
T KOG2751|consen 223 LNEEEDQYWREYNNFQRQLIEHQDELDSLEAQIEYSQAQLDKLRKTN 269 (447)
T ss_pred HHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhh
No 480
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=55.45 E-value=1.1e+02 Score=24.60 Aligned_cols=77 Identities=16% Similarity=0.214 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 002676 739 RYNSEDRHLAVNLETTKWELADAEKELKWLKSAVTSSDKEYEQIQRKTEDMRKELENERNERKKLEEELMEVNNKVAELT 818 (894)
Q Consensus 739 ~l~~e~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~el~~~~~~l~e~~~~l~~~~~~~~~l~~~i~~l~~~i~~l~ 818 (894)
++.+-+..+..+.+.+...+......-..+...+...-.++..++..+.++......... .++++|..|+..++..+
T Consensus 1 Rl~elLd~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~---~YEeEI~rLr~eLe~r~ 77 (79)
T PF08581_consen 1 RLNELLDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQ---QYEEEIARLRRELEQRG 77 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHCHHT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhC
No 481
>PF14311 DUF4379: Domain of unknown function (DUF4379)
Probab=55.24 E-value=7.2 Score=28.70 Aligned_cols=21 Identities=29% Similarity=0.596 Sum_probs=0.0
Q ss_pred CCCcc-cHhHHhHhhccCCCCccCc
Q 002676 857 CFHLF-CNPCIQRNLEIRHRKCPGC 880 (894)
Q Consensus 857 CgH~f-C~~C~~~~~~~~~~~CP~C 880 (894)
|||.| +...... .+...||.|
T Consensus 34 Cgh~w~~~v~~R~---~~~~~CP~C 55 (55)
T PF14311_consen 34 CGHEWKASVNDRT---RRGKGCPYC 55 (55)
T ss_pred CCCeeEccHhhhc---cCCCCCCCC
No 482
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=55.13 E-value=1.1e+02 Score=33.89 Aligned_cols=70 Identities=16% Similarity=0.229 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002676 716 VESAKLRILHAEEQMKACLTEALRYNSEDRHLAVNLETTKWELADAEKELKWLKSAVTSSDKEYEQIQRK 785 (894)
Q Consensus 716 ~~~~~~~~~~l~~~l~~~~~~~~~l~~e~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~el~~~~~~ 785 (894)
+..+....+....++..++....++..++.++...++.+++.|-..+.++..++..++..+..++++.+.
T Consensus 81 ~~e~~RI~~sVs~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~~ 150 (907)
T KOG2264|consen 81 LREQKRILASVSLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELRET 150 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHhh
No 483
>KOG0396 consensus Uncharacterized conserved protein [Function unknown]
Probab=55.07 E-value=6 Score=41.05 Aligned_cols=54 Identities=17% Similarity=0.141 Sum_probs=0.0
Q ss_pred cccccccccCC-----------------------------cccccCCCcccHhHHhHhhccCCCCccCcCCCCCCCCccc
Q 002676 841 KCGVCFDRPKE-----------------------------VVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDVRF 891 (894)
Q Consensus 841 ~C~iC~~~~~~-----------------------------~v~~~CgH~fC~~C~~~~~~~~~~~CP~C~~~~~~~d~~~ 891 (894)
.||+|...|+. |.++|=||++...-+..|-.-.+-.||.-+..|.-.+..+
T Consensus 306 ~CpvC~~~f~~ia~~LPfah~~~S~Lvc~isge~md~~N~P~lfpnG~Vyg~~~L~s~~~~~~i~dP~~~k~f~~~~l~k 385 (389)
T KOG0396|consen 306 NCPVCCEAFKPIAQALPFAHHAQSRLVCSISGELMDDDNPPHLFPNGYVYGTKALESLNEDDGIGDPRTKKVFRYSELCK 385 (389)
T ss_pred CCCCcccccchhhhcCCchhhhhhHHHhhccccccCCCCCcccccCceeehhHHHHhhcccCCCcCCCCCccccHHHHHH
Q ss_pred ccC
Q 002676 892 VKI 894 (894)
Q Consensus 892 ~~~ 894 (894)
+|+
T Consensus 386 vy~ 388 (389)
T KOG0396|consen 386 VYL 388 (389)
T ss_pred Hhc
No 484
>KOG4080 consensus Mitochondrial ribosomal protein L32 [Translation, ribosomal structure and biogenesis]
Probab=55.03 E-value=7.2 Score=35.24 Aligned_cols=32 Identities=19% Similarity=0.429 Sum_probs=0.0
Q ss_pred HhcccccccccccccccCCcccccCCCcccHhHHhHhhc
Q 002676 833 IKDCKAILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLE 871 (894)
Q Consensus 833 ~~~l~~~l~C~iC~~~~~~~v~~~CgH~fC~~C~~~~~~ 871 (894)
++...+..+||+|+-.-. .|+.|..|......
T Consensus 87 Lk~k~nl~~CP~CGh~k~-------a~~LC~~Cy~kV~k 118 (176)
T KOG4080|consen 87 LKPKDNLNTCPACGHIKP-------AHTLCDYCYAKVHK 118 (176)
T ss_pred ccchhccccCcccCcccc-------ccccHHHHHHHHHH
No 485
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.02 E-value=3.4e+02 Score=30.29 Aligned_cols=347 Identities=12% Similarity=0.076 Sum_probs=0.0
Q ss_pred CCCCCCccccchhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhhhhhHHHHHHHHHhhcCCCCC
Q 002676 39 PSSPSSNKSVDSAVLQYQNQKLVQQLDSQKHELQSLEAKIKELQEKQTSYDEMLITVNQLWNLFVDDLILLGVRAGGGSN 118 (894)
Q Consensus 39 ~~~~~~~~~~d~~~lq~~~~~l~~~l~~~~~~~~~L~~~~~~l~~k~~~~~~~l~~~~~~~~~l~~~l~~l~~~~~~~~~ 118 (894)
++..|....+|..+. +...+..++++..-|...+..++-++.....+|..-+.....|.+.|..-+-...
T Consensus 219 ~~ssS~~g~~~~~~~------~~ae~~~~~~e~~llr~t~~~~e~riEtqkqtl~ardesIkkLlEmLq~kgmg~~---- 288 (654)
T KOG4809|consen 219 INSSSAKGLGYTCLG------RLAELLTTKEEQFLLRSTDPSGEQRIETQKQTLDARDESIKKLLEMLQRKGMGRS---- 288 (654)
T ss_pred hhhhcccCCCchHHH------HHHHhhhHHHHHHHHHhcCchHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcccc----
Q ss_pred CcccCCCcCccCCCCCCCCChhHHHHHHhhhccccCCCcccchHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHhhHH
Q 002676 119 VLQKLDSENQTRDSIPSGPPEDMFLCRLLQVNSIESSSKDGILQYVEEALASRHSSARELMKFIEEVIDAQRVKTKSIAE 198 (894)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ee~l~~r~~~~~~~~~~l~~~~~~~~~~~~~l~~ 198 (894)
..+..|-..-+ ...-..|.....+.+-+.++.....-+.
T Consensus 289 ------------------~~~~df~~~~~-------------~a~~~~h~r~~~er~IerLkeqr~rder---------- 327 (654)
T KOG4809|consen 289 ------------------NQPRDFTKANL-------------SAHEMAHMRMKVERIIERLKEQRERDER---------- 327 (654)
T ss_pred ------------------cchhhHHHHHH-------------hHHHHHhhhchHHHHHHHhcchhhhhHH----------
Q ss_pred HHHhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhHHHHHHHHhhHHHHHHHHHHHHH
Q 002676 199 AFHEKLSAEDAIIQLSKIDDMMKEEAKNLHEVMEIIHLKHKEYADQIENYISSHSVDQAEIQHLAGELEETMAELEESRR 278 (894)
Q Consensus 199 ~~~~~~~~~~~~~~l~~~~~~l~~e~~~l~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~e~~~l~~~l~~~~~el~~~~~ 278 (894)
..........+....+...+..++..+.........+......+.........++..+.=-++....++..++.
T Consensus 328 ------E~~EeIe~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leIalEqkkEec~kme~ 401 (654)
T KOG4809|consen 328 ------ERLEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQKKEECSKMEA 401 (654)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHhhhhhhcCCcccccccccccCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002676 279 KLVSLKMQKDIASGTHSLVPAAAMVNGSVSPEKRPADGRMDLQELKDSVEEAKILAADRLSEVEEAQQDNINLSKQLENL 358 (894)
Q Consensus 279 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~~~el~~l~~~~~~l~~~~~~l 358 (894)
.+.........+.. -..+...+..++.+.......+.....+.+.+-.-+........+-
T Consensus 402 qLkkAh~~~ddar~--------------------~pe~~d~i~~le~e~~~y~de~~kaqaevdrlLeilkeveneKnDk 461 (654)
T KOG4809|consen 402 QLKKAHNIEDDARM--------------------NPEFADQIKQLEKEASYYRDECGKAQAEVDRLLEILKEVENEKNDK 461 (654)
T ss_pred HHHHHHHhhHhhhc--------------------ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q ss_pred HHHhhhhhHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHchhcchhhHHHHHHH
Q 002676 359 QNELNDDKYVHSSRLYNLVNDQLQHWNVEVERYKALTDSLLIDRSLVLRREKEINVRAESADAARNTVDDSESRIERLEV 438 (894)
Q Consensus 359 ~~~l~~~~~~~~~~~~~~l~~~l~~l~~el~~~~~~~~~l~~e~~~l~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~l~~ 438 (894)
..++..+. -....+...+..-...-..+....-..+..+....+.+...-..+ .+..+-.
T Consensus 462 dkkiaele-r~~kdqnkkvaNlkHk~q~Ekkk~aq~lee~rrred~~~d~sqhl-------------------q~eel~~ 521 (654)
T KOG4809|consen 462 DKKIAELE-RHMKDQNKKVANLKHKQQLEKKKNAQLLEEVRRREDSMADNSQHL-------------------QIEELMN 521 (654)
T ss_pred cchhhhcC-chhhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHH-------------------HHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHH
Q 002676 439 QLQKSIIEKNDLGLKMEEAIQDSGRKDIKAEFRVMASALSKEMGMM 484 (894)
Q Consensus 439 ~l~~~~~el~~l~~~~~~~~~~~~~~~~~~el~~~~~~l~~~~~~l 484 (894)
.+.....+++.....+........ +-..-+..+...-...+..+
T Consensus 522 alektkQel~~tkarl~stqqsla--Eke~HL~nLr~errk~Lee~ 565 (654)
T KOG4809|consen 522 ALEKTKQELDATKARLASTQQSLA--EKEAHLANLRIERRKQLEEI 565 (654)
T ss_pred HHHHHhhChhhhhhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
No 486
>PRK02119 hypothetical protein; Provisional
Probab=55.01 E-value=1e+02 Score=24.27 Aligned_cols=56 Identities=13% Similarity=0.146 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 002676 707 RQLQQINALVESAKLRILHAEEQMKACLTEALRYNSEDRHLAVNLETTKWELADAE 762 (894)
Q Consensus 707 ~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~e~~~~~~~~~~l~~~l~~l~ 762 (894)
..+..+...+..+...+.-.+..+..+...+......+..+...+..+..++..+.
T Consensus 2 ~~~~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~~ 57 (73)
T PRK02119 2 QIQQNLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDMQ 57 (73)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
No 487
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=54.69 E-value=97 Score=34.29 Aligned_cols=71 Identities=20% Similarity=0.302 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002676 597 VKAANEAEAACQQRLSAAEAEIIELVAKLDASERDVMELEEAMKSKDREAEAYIAEMETIGQAFEDMQTQN 667 (894)
Q Consensus 597 ~~~~~~~~~~l~~~i~~le~el~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~~~~~~~~~ 667 (894)
+.....-.+...-++.+++....+|+.+++.....+++++..+...+.++..+..+++..+.++.++...+
T Consensus 81 ~~e~~RI~~sVs~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~~n 151 (907)
T KOG2264|consen 81 LREQKRILASVSLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELRETN 151 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHhhc
No 488
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=54.67 E-value=2.4e+02 Score=28.46 Aligned_cols=111 Identities=11% Similarity=0.030 Sum_probs=0.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002676 639 MKSKDREAEAYIAEMETIGQAFEDMQTQNQHLLQQVAERDDLNIKLVSESVKTKQVQSFLLSEKQALARQLQQINALVES 718 (894)
Q Consensus 639 l~~~~~~~~~l~~e~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~e~~~~~~~~~~l~~e~~~l~~~l~~l~~~~~~ 718 (894)
++.++--+.-+...+.+....+.+-..++..+..++..+.+.--.-.+-+..+.=.+++.+.++..|.+-+..+...+..
T Consensus 63 LQQKEV~iRHLkakLkes~~~l~dRetEI~eLksQL~RMrEDWIEEECHRVEAQLALKEARkEIkQLkQvieTmrssL~e 142 (305)
T PF15290_consen 63 LQQKEVCIRHLKAKLKESENRLHDRETEIDELKSQLARMREDWIEEECHRVEAQLALKEARKEIKQLKQVIETMRSSLAE 142 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhch
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002676 719 AKLRILHAEEQMKACLTEALRYNSEDRHLAV 749 (894)
Q Consensus 719 ~~~~~~~l~~~l~~~~~~~~~l~~e~~~~~~ 749 (894)
-.+-|...=-.+.-....++.+-..+.-.+.
T Consensus 143 kDkGiQKYFvDINiQN~KLEsLLqsMElAq~ 173 (305)
T PF15290_consen 143 KDKGIQKYFVDINIQNKKLESLLQSMELAQS 173 (305)
T ss_pred hhhhHHHHHhhhhhhHhHHHHHHHHHHHHHh
No 489
>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]
Probab=54.60 E-value=12 Score=42.41 Aligned_cols=61 Identities=20% Similarity=0.464 Sum_probs=0.0
Q ss_pred HHHHHHHhccccccccccccccc-----------------------------CCcccccCCCcc-cHhHHhHhhccCCCC
Q 002676 827 QKLQDEIKDCKAILKCGVCFDRP-----------------------------KEVVITKCFHLF-CNPCIQRNLEIRHRK 876 (894)
Q Consensus 827 ~~L~ee~~~l~~~l~C~iC~~~~-----------------------------~~~v~~~CgH~f-C~~C~~~~~~~~~~~ 876 (894)
+..+-.-+.+...+.|+.|.-.| +.-.++-||..| -..-++..++.-...
T Consensus 228 eHikyrhekne~nfsC~lCsytFAyRtQLErhm~~hkpg~dqa~sltqsa~lRKFKCtECgKAFKfKHHLKEHlRIHSGE 307 (1007)
T KOG3623|consen 228 EHIKYRHEKNEPNFSCMLCSYTFAYRTQLERHMQLHKPGGDQAISLTQSALLRKFKCTECGKAFKFKHHLKEHLRIHSGE 307 (1007)
T ss_pred HHHHHHHhhCCCCCcchhhhhhhhhHHHHHHHHHhhcCCCcccccccchhhhccccccccchhhhhHHHHHhhheeecCC
Q ss_pred ----ccCcCCCCCCC
Q 002676 877 ----CPGCGTAFGQS 887 (894)
Q Consensus 877 ----CP~C~~~~~~~ 887 (894)
||.|++.|+..
T Consensus 308 KPfeCpnCkKRFSHS 322 (1007)
T KOG3623|consen 308 KPFECPNCKKRFSHS 322 (1007)
T ss_pred CCcCCcccccccccC
No 490
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=54.48 E-value=2.9 Score=29.39 Aligned_cols=27 Identities=22% Similarity=0.506 Sum_probs=0.0
Q ss_pred CCcc-cHhHHhHh---hccCCCCccCcCCCC
Q 002676 858 FHLF-CNPCIQRN---LEIRHRKCPGCGTAF 884 (894)
Q Consensus 858 gH~f-C~~C~~~~---~~~~~~~CP~C~~~~ 884 (894)
++.| |..|-... -.....+||.||.+|
T Consensus 1 ~~~y~C~~CG~~~~~~~~~~~~~Cp~CG~~~ 31 (46)
T PRK00398 1 MAEYKCARCGREVELDEYGTGVRCPYCGYRI 31 (46)
T ss_pred CCEEECCCCCCEEEECCCCCceECCCCCCeE
No 491
>COG2093 DNA-directed RNA polymerase, subunit E'' [Transcription]
Probab=54.03 E-value=6.2 Score=29.22 Aligned_cols=25 Identities=28% Similarity=0.774 Sum_probs=0.0
Q ss_pred cHhHHhHhhccCCCCccCcCCC-CCCC
Q 002676 862 CNPCIQRNLEIRHRKCPGCGTA-FGQS 887 (894)
Q Consensus 862 C~~C~~~~~~~~~~~CP~C~~~-~~~~ 887 (894)
|..| ..........||.|+.. |..+
T Consensus 7 C~~C-k~l~~~d~e~CP~Cgs~~~te~ 32 (64)
T COG2093 7 CKNC-KRLTPEDTEICPVCGSTDLTEE 32 (64)
T ss_pred Hhhc-cccCCCCCccCCCCCCcccchh
No 492
>PRK00295 hypothetical protein; Provisional
Probab=53.98 E-value=1e+02 Score=23.89 Aligned_cols=51 Identities=18% Similarity=0.269 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 002676 614 AEAEIIELVAKLDASERDVMELEEAMKSKDREAEAYIAEMETIGQAFEDMQ 664 (894)
Q Consensus 614 le~el~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~~~~~~ 664 (894)
++..|.+|..++.-.+..+..|...+......+..+...+..+...+.++.
T Consensus 3 ~e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00295 3 LEERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 493
>COG4068 Uncharacterized protein containing a Zn-ribbon [Function unknown]
Probab=53.85 E-value=8.3 Score=27.94 Aligned_cols=17 Identities=35% Similarity=0.751 Sum_probs=0.0
Q ss_pred CCCCccCcCCCCCCCCc
Q 002676 873 RHRKCPGCGTAFGQSDV 889 (894)
Q Consensus 873 ~~~~CP~C~~~~~~~d~ 889 (894)
.++.||+|++++-.+..
T Consensus 7 PH~HC~VCg~aIp~de~ 23 (64)
T COG4068 7 PHRHCVVCGKAIPPDEQ 23 (64)
T ss_pred CCccccccCCcCCCccc
No 494
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=53.81 E-value=6.9 Score=35.94 Aligned_cols=36 Identities=17% Similarity=0.273 Sum_probs=0.0
Q ss_pred ccccCCCcccHhHHhHh-hccCCCCccCcCCCCCCCC
Q 002676 853 VITKCFHLFCNPCIQRN-LEIRHRKCPGCGTAFGQSD 888 (894)
Q Consensus 853 v~~~CgH~fC~~C~~~~-~~~~~~~CP~C~~~~~~~d 888 (894)
++..||+.|=+.=.... -.++...||.||..+...|
T Consensus 101 ~Cp~C~~~y~~~ea~~~~d~~~~f~Cp~Cg~~l~~~d 137 (147)
T smart00531 101 KCPNCQSKYTFLEANQLLDMDGTFTCPRCGEELEEDD 137 (147)
T ss_pred ECcCCCCEeeHHHHHHhcCCCCcEECCCCCCEEEEcC
No 495
>cd01407 SIR2-fam SIR2 family of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose. Sir2 proteins, also known as sirtuins, are found in all eukaryotes and many archaea and prokaryotes and have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The oligomerization state of Sir2 appears to be organism-dependent, sometimes occurring as a monomer and sometimes as a multimer.
Probab=53.80 E-value=13 Score=36.98 Aligned_cols=43 Identities=19% Similarity=0.235 Sum_probs=0.0
Q ss_pred cccccCCcccccCCCcc-cHhHHhHhhccCCCCccCcCCCCCCC
Q 002676 845 CFDRPKEVVITKCFHLF-CNPCIQRNLEIRHRKCPGCGTAFGQS 887 (894)
Q Consensus 845 C~~~~~~~v~~~CgH~f-C~~C~~~~~~~~~~~CP~C~~~~~~~ 887 (894)
|+-.+....++.|+|.| ............-..||.|+..+.++
T Consensus 103 lHG~~~~~~C~~C~~~~~~~~~~~~~~~~~~p~C~~Cg~~lrP~ 146 (218)
T cd01407 103 LHGSLFRVRCTKCGKEYPRDELQADIDREEVPRCPKCGGLLRPD 146 (218)
T ss_pred CcCCcCcceeCCCcCCCcHHHHhHhhccCCCCcCCCCCCccCCC
No 496
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=53.71 E-value=1.9e+02 Score=31.94 Aligned_cols=81 Identities=16% Similarity=0.179 Sum_probs=0.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002676 639 MKSKDREAEAYIAEMETIGQAFEDMQTQNQHLLQQVAERDDLN-IKLVSESVKTKQVQSFLLSEKQALARQLQQINALVE 717 (894)
Q Consensus 639 l~~~~~~~~~l~~e~~~l~~~~~~~~~~~~~l~~~l~~~~~~~-~~l~~e~~~~~~~~~~l~~e~~~l~~~l~~l~~~~~ 717 (894)
+..+-..+..+..++..+...-+.+..++.++..+...++.+| ..+..+...+.++...+..++..+...+..+..+++
T Consensus 61 lrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~~~l~ 140 (472)
T TIGR03752 61 LRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQLQRRLA 140 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred HH
Q 002676 718 SA 719 (894)
Q Consensus 718 ~~ 719 (894)
..
T Consensus 141 ~~ 142 (472)
T TIGR03752 141 GV 142 (472)
T ss_pred hc
No 497
>PRK04325 hypothetical protein; Provisional
Probab=53.70 E-value=1.1e+02 Score=24.19 Aligned_cols=52 Identities=19% Similarity=0.227 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 002676 612 SAAEAEIIELVAKLDASERDVMELEEAMKSKDREAEAYIAEMETIGQAFEDM 663 (894)
Q Consensus 612 ~~le~el~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~~~~~ 663 (894)
..++..|.+|..++.-.+..+..|...+......+..+...+..+...+.++
T Consensus 5 ~~~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~ 56 (74)
T PRK04325 5 QEMEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDA 56 (74)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 498
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=53.53 E-value=2.2e+02 Score=27.50 Aligned_cols=90 Identities=16% Similarity=0.169 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 002676 686 SESVKTKQVQSFLLSEKQALARQLQQINALVESAKLRILHAEEQMKACLTEALRYNSEDRHLAVNLETTKWELADAEKEL 765 (894)
Q Consensus 686 ~e~~~~~~~~~~l~~e~~~l~~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~e~~~~~~~~~~l~~~l~~l~~~l 765 (894)
.++..+......+......++..+..-......+...+..++..+-.++.+...+.........++..++..+..+...+
T Consensus 96 ~kLL~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~ 175 (190)
T PF05266_consen 96 NKLLSLKDDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEI 175 (190)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHH
Q 002676 766 KWLKSAVTSS 775 (894)
Q Consensus 766 ~~~~~~~~~~ 775 (894)
...+.+....
T Consensus 176 ~~~e~~F~~~ 185 (190)
T PF05266_consen 176 ENAELEFQSV 185 (190)
T ss_pred HHHHHHHHHH
No 499
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=53.43 E-value=4.5 Score=23.27 Aligned_cols=10 Identities=50% Similarity=1.381 Sum_probs=0.0
Q ss_pred ccCcCCCCCC
Q 002676 877 CPGCGTAFGQ 886 (894)
Q Consensus 877 CP~C~~~~~~ 886 (894)
||.|+..|..
T Consensus 3 C~~C~~~f~~ 12 (23)
T PF00096_consen 3 CPICGKSFSS 12 (23)
T ss_dssp ETTTTEEESS
T ss_pred CCCCCCccCC
No 500
>PF13824 zf-Mss51: Zinc-finger of mitochondrial splicing suppressor 51
Probab=53.26 E-value=5.8 Score=28.83 Aligned_cols=24 Identities=25% Similarity=0.638 Sum_probs=0.0
Q ss_pred ccHhHHhHhhccCCCCccCcCCCC
Q 002676 861 FCNPCIQRNLEIRHRKCPGCGTAF 884 (894)
Q Consensus 861 fC~~C~~~~~~~~~~~CP~C~~~~ 884 (894)
||..|....-......||-||.|+
T Consensus 1 ~Cpv~~~~~~~~v~~~Cp~cGipt 24 (55)
T PF13824_consen 1 LCPVCKKDLPAHVNFECPDCGIPT 24 (55)
T ss_pred CCCCCccccccccCCcCCCCCCcC
Done!