Query 002677
Match_columns 893
No_of_seqs 725 out of 3006
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 04:53:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002677.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002677hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5184 ATS1 Alpha-tubulin sup 100.0 1.1E-46 2.3E-51 412.9 30.3 364 263-656 62-464 (476)
2 KOG1427 Uncharacterized conser 100.0 7.4E-41 1.6E-45 344.0 19.7 361 267-657 18-399 (443)
3 COG5184 ATS1 Alpha-tubulin sup 100.0 4.9E-39 1.1E-43 352.7 27.3 339 248-604 102-464 (476)
4 KOG1427 Uncharacterized conser 100.0 1E-36 2.2E-41 313.6 16.9 311 261-605 69-399 (443)
5 KOG0783 Uncharacterized conser 99.9 7.8E-26 1.7E-30 257.2 15.4 307 263-608 136-452 (1267)
6 KOG0783 Uncharacterized conser 99.9 1.5E-25 3.2E-30 255.0 14.1 305 325-657 136-449 (1267)
7 KOG1428 Inhibitor of type V ad 99.9 1E-20 2.3E-25 221.2 23.5 268 266-582 495-870 (3738)
8 cd01248 PH_PLC Phospholipase C 99.8 1.6E-20 3.6E-25 177.3 9.8 104 25-128 2-115 (115)
9 KOG1428 Inhibitor of type V ad 99.8 5.9E-19 1.3E-23 206.8 21.2 299 314-652 481-890 (3738)
10 PF12814 Mcp5_PH: Meiotic cell 99.7 1.3E-17 2.8E-22 159.2 12.5 107 22-131 2-123 (123)
11 KOG0169 Phosphoinositide-speci 99.4 3.5E-14 7.6E-19 164.9 -0.7 138 19-174 7-149 (746)
12 PF01363 FYVE: FYVE zinc finge 99.3 4.9E-13 1.1E-17 114.5 0.3 68 657-725 1-68 (69)
13 smart00064 FYVE Protein presen 99.1 1.9E-11 4.1E-16 104.4 3.0 66 657-725 2-67 (68)
14 PF00415 RCC1: Regulator of ch 99.1 4.1E-11 8.9E-16 96.1 3.4 50 605-654 1-51 (51)
15 KOG0941 E3 ubiquitin protein l 99.1 9.7E-13 2.1E-17 153.7 -9.2 188 303-555 5-198 (850)
16 KOG1264 Phospholipase C [Lipid 99.1 1.5E-11 3.2E-16 141.5 -1.4 118 15-132 7-133 (1267)
17 PTZ00303 phosphatidylinositol 99.0 8.2E-11 1.8E-15 134.6 3.3 74 654-727 448-532 (1374)
18 PF00415 RCC1: Regulator of ch 99.0 4.2E-10 9.1E-15 90.2 5.4 50 330-379 1-51 (51)
19 KOG1818 Membrane trafficking a 99.0 8.5E-11 1.9E-15 136.0 1.8 70 655-730 158-227 (634)
20 KOG1729 FYVE finger containing 99.0 1.1E-10 2.4E-15 125.4 0.8 68 655-726 158-226 (288)
21 KOG1819 FYVE finger-containing 98.9 2.3E-10 5E-15 125.5 1.5 71 650-723 886-961 (990)
22 KOG0941 E3 ubiquitin protein l 98.8 1.3E-10 2.9E-15 136.1 -6.9 143 418-565 13-156 (850)
23 PF13540 RCC1_2: Regulator of 98.8 1.1E-08 2.3E-13 72.6 4.5 30 589-618 1-30 (30)
24 PF13540 RCC1_2: Regulator of 98.7 1.5E-08 3.2E-13 72.0 4.9 30 314-343 1-30 (30)
25 cd00065 FYVE FYVE domain; Zinc 98.7 4.4E-09 9.5E-14 86.5 2.3 55 665-722 2-56 (57)
26 KOG1842 FYVE finger-containing 98.3 6.1E-08 1.3E-12 106.6 -2.5 70 658-728 173-262 (505)
27 KOG2999 Regulator of Rac1, req 98.2 1.5E-07 3.2E-12 106.1 -1.6 113 20-132 531-662 (713)
28 KOG1409 Uncharacterized conser 98.1 7.6E-07 1.7E-11 95.5 0.6 80 644-728 256-353 (404)
29 KOG1841 Smad anchor for recept 98.1 9.1E-07 2E-11 106.6 0.7 63 654-720 546-608 (1287)
30 cd01244 PH_RasGAP_CG9209 RAS_G 98.0 4.5E-05 9.8E-10 69.9 11.1 86 32-127 4-97 (98)
31 cd01235 PH_SETbf Set binding f 97.8 0.00016 3.5E-09 66.3 11.2 92 35-129 5-101 (101)
32 cd01236 PH_outspread Outspread 97.8 0.00013 2.9E-09 67.5 9.6 80 37-127 18-102 (104)
33 KOG1843 Uncharacterized conser 97.7 9.1E-06 2E-10 88.9 1.0 69 655-724 150-218 (473)
34 cd01238 PH_Tec Tec pleckstrin 97.7 0.00028 6.1E-09 65.7 10.0 78 45-127 22-105 (106)
35 cd01265 PH_PARIS-1 PARIS-1 ple 97.5 0.00095 2.1E-08 60.9 10.6 83 33-128 3-93 (95)
36 cd01264 PH_melted Melted pleck 97.5 0.00068 1.5E-08 62.4 9.3 75 45-127 20-99 (101)
37 cd01233 Unc104 Unc-104 pleckst 97.5 0.00082 1.8E-08 61.9 10.0 93 29-130 3-99 (100)
38 cd01266 PH_Gab Gab (Grb2-assoc 97.4 0.00094 2E-08 62.4 10.0 79 45-128 20-107 (108)
39 PF00169 PH: PH domain; Inter 97.3 0.0027 5.8E-08 57.2 11.6 90 34-129 6-103 (104)
40 smart00233 PH Pleckstrin homol 97.3 0.0021 4.5E-08 57.1 10.3 90 30-129 3-101 (102)
41 cd01251 PH_centaurin_alpha Cen 97.1 0.0043 9.2E-08 57.5 10.8 89 34-131 4-102 (103)
42 KOG4424 Predicted Rho/Rac guan 97.1 0.00024 5.3E-09 81.4 2.9 68 662-732 412-479 (623)
43 cd01219 PH_FGD FGD (faciogenit 96.9 0.0082 1.8E-07 55.4 10.5 89 29-130 3-100 (101)
44 cd01220 PH_CDEP Chondrocyte-de 96.9 0.0081 1.8E-07 55.2 10.1 88 29-130 3-98 (99)
45 cd01247 PH_GPBP Goodpasture an 96.9 0.0088 1.9E-07 54.1 10.1 78 34-127 4-90 (91)
46 cd00821 PH Pleckstrin homology 96.8 0.0054 1.2E-07 53.8 8.4 75 42-127 14-95 (96)
47 cd01257 PH_IRS Insulin recepto 96.4 0.035 7.6E-07 51.3 10.9 74 44-127 14-100 (101)
48 PF15409 PH_8: Pleckstrin homo 96.4 0.022 4.7E-07 51.1 9.0 79 35-127 3-87 (89)
49 cd01250 PH_centaurin Centaurin 96.4 0.031 6.6E-07 50.1 10.2 73 42-126 14-92 (94)
50 cd01246 PH_oxysterol_bp Oxyste 96.3 0.032 6.9E-07 49.6 9.9 78 35-127 5-90 (91)
51 cd01260 PH_CNK Connector enhan 96.1 0.048 1E-06 49.6 9.8 72 43-127 19-95 (96)
52 cd01256 PH_dynamin Dynamin ple 96.0 0.028 6E-07 50.7 7.5 72 41-125 16-101 (110)
53 KOG2059 Ras GTPase-activating 95.5 0.025 5.5E-07 66.7 6.6 97 29-135 565-670 (800)
54 cd00900 PH-like Pleckstrin hom 95.3 0.13 2.8E-06 45.2 9.5 74 42-127 17-98 (99)
55 cd01252 PH_cytohesin Cytohesin 95.2 0.2 4.3E-06 48.0 10.8 86 34-132 5-116 (125)
56 KOG1265 Phospholipase C [Lipid 95.1 0.084 1.8E-06 63.7 9.4 106 25-132 13-137 (1189)
57 cd01218 PH_phafin2 Phafin2 Pl 95.1 0.21 4.5E-06 46.4 10.1 88 30-131 6-100 (104)
58 PF11725 AvrE: Pathogenicity f 94.9 1.1 2.4E-05 58.3 19.0 245 365-656 490-813 (1774)
59 PF15413 PH_11: Pleckstrin hom 94.9 0.15 3.3E-06 47.9 9.0 92 35-127 5-111 (112)
60 cd01261 PH_SOS Son of Sevenles 94.4 0.32 7E-06 45.7 9.8 92 28-131 4-111 (112)
61 cd01241 PH_Akt Akt pleckstrin 94.4 0.25 5.3E-06 45.7 9.0 92 29-128 2-101 (102)
62 KOG1811 Predicted Zn2+-binding 94.4 0.0045 9.8E-08 71.1 -3.2 65 656-723 313-382 (1141)
63 PF08458 PH_2: Plant pleckstri 94.2 0.44 9.5E-06 44.3 10.0 96 33-133 1-107 (110)
64 cd01254 PH_PLD Phospholipase D 93.3 0.78 1.7E-05 43.8 10.4 82 44-127 33-120 (121)
65 KOG0230 Phosphatidylinositol-4 93.0 0.066 1.4E-06 68.1 3.2 50 666-729 6-55 (1598)
66 cd01245 PH_RasGAP_CG5898 RAS G 92.8 0.86 1.9E-05 41.9 9.4 74 45-127 17-97 (98)
67 PF02318 FYVE_2: FYVE-type zin 90.9 0.14 3.1E-06 48.7 2.2 52 664-724 53-104 (118)
68 cd01242 PH_ROK Rok (Rho- assoc 90.0 3.5 7.6E-05 38.5 10.2 83 45-129 20-110 (112)
69 cd01232 PH_TRIO Trio pleckstri 89.7 1.5 3.2E-05 41.5 7.9 89 29-130 6-113 (114)
70 KOG0943 Predicted ubiquitin-pr 89.3 0.059 1.3E-06 66.1 -2.3 132 311-450 373-509 (3015)
71 cd01222 PH_clg Clg (common-sit 87.8 3.6 7.8E-05 37.8 8.8 35 95-129 58-95 (97)
72 KOG3669 Uncharacterized conser 87.1 73 0.0016 37.9 23.5 70 313-388 228-299 (705)
73 PLN02153 epithiospecifier prot 86.8 59 0.0013 36.5 23.9 16 598-613 307-322 (341)
74 KOG3669 Uncharacterized conser 84.9 7 0.00015 45.9 11.0 107 319-443 190-299 (705)
75 cd01237 Unc112 Unc-112 pleckst 84.7 5.9 0.00013 36.9 8.5 78 37-127 14-101 (106)
76 PF11725 AvrE: Pathogenicity f 83.2 3 6.4E-05 54.6 7.9 72 534-606 743-815 (1774)
77 cd01253 PH_beta_spectrin Beta- 82.0 14 0.0003 33.8 10.1 33 95-127 70-103 (104)
78 KOG0943 Predicted ubiquitin-pr 79.8 0.22 4.7E-06 61.5 -3.4 128 363-509 373-504 (3015)
79 KOG3723 PH domain protein Melt 79.1 1 2.2E-05 52.4 1.7 84 44-136 754-843 (851)
80 KOG3551 Syntrophins (type beta 79.0 4.4 9.5E-05 45.3 6.4 105 21-128 147-270 (506)
81 KOG1090 Predicted dual-specifi 77.9 1.7 3.6E-05 53.6 3.0 79 42-129 1649-1731(1732)
82 PTZ00267 NIMA-related protein 75.5 7.5 0.00016 45.9 7.8 91 32-129 380-476 (478)
83 cd01240 PH_beta-ARK Beta adren 74.9 5.2 0.00011 37.1 4.7 78 45-133 21-102 (116)
84 PF15406 PH_6: Pleckstrin homo 74.4 7.2 0.00016 36.2 5.5 68 46-127 39-111 (112)
85 KOG4693 Uncharacterized conser 74.3 1.4E+02 0.0029 32.5 19.0 63 373-444 80-146 (392)
86 PHA03098 kelch-like protein; P 73.2 1.7E+02 0.0036 35.0 18.6 16 429-445 335-350 (534)
87 PF02183 HALZ: Homeobox associ 73.2 3.5 7.7E-05 32.2 2.8 25 868-892 14-38 (45)
88 PHA03098 kelch-like protein; P 73.1 1.3E+02 0.0027 36.1 17.5 17 374-391 335-351 (534)
89 KOG1900 Nuclear pore complex, 72.0 3.3E+02 0.0071 35.9 21.2 217 325-561 93-339 (1311)
90 cd01239 PH_PKD Protein kinase 71.7 32 0.0007 32.5 9.1 88 34-126 5-115 (117)
91 KOG0230 Phosphatidylinositol-4 71.6 2.2 4.8E-05 55.1 2.1 55 663-729 95-149 (1598)
92 PHA02713 hypothetical protein; 71.5 85 0.0019 38.0 15.5 20 372-391 341-360 (557)
93 cd01223 PH_Vav Vav pleckstrin 70.6 36 0.00079 32.2 9.3 36 97-132 77-114 (116)
94 KOG1729 FYVE finger containing 70.2 1.4 3.1E-05 48.2 0.0 66 657-723 12-81 (288)
95 TIGR01562 FdhE formate dehydro 70.2 2.7 5.8E-05 46.6 2.1 74 645-728 189-266 (305)
96 cd01227 PH_Dbs Dbs (DBL's big 67.3 40 0.00088 32.8 9.2 40 94-133 78-119 (133)
97 PRK03564 formate dehydrogenase 67.2 3.7 8E-05 45.5 2.4 74 645-728 192-266 (309)
98 KOG4441 Proteins containing BT 67.1 1E+02 0.0022 37.6 14.8 22 592-613 509-530 (571)
99 PLN02153 epithiospecifier prot 66.8 2.2E+02 0.0047 31.9 24.2 17 374-391 130-146 (341)
100 KOG1274 WD40 repeat protein [G 66.1 84 0.0018 39.3 13.5 71 372-448 14-88 (933)
101 cd01259 PH_Apbb1ip Apbb1ip (Am 64.2 43 0.00094 31.5 8.3 90 31-129 3-108 (114)
102 cd01228 PH_BCR-related BCR (br 63.8 23 0.00049 32.3 6.3 81 29-129 3-94 (96)
103 KOG0646 WD40 repeat protein [G 62.3 2.7E+02 0.0059 32.5 15.7 157 251-444 85-245 (476)
104 KOG0315 G-protein beta subunit 62.2 2.3E+02 0.0051 30.6 18.7 69 472-561 126-196 (311)
105 COG4257 Vgb Streptogramin lyas 61.8 73 0.0016 34.8 10.6 137 261-443 65-205 (353)
106 PF07569 Hira: TUP1-like enhan 61.0 39 0.00085 35.7 8.7 76 313-391 14-95 (219)
107 cd01230 PH_EFA6 EFA6 Pleckstri 60.4 74 0.0016 30.2 9.5 39 93-131 74-113 (117)
108 KOG2106 Uncharacterized conser 59.9 3.6E+02 0.0077 32.0 18.2 89 314-442 214-303 (626)
109 KOG4441 Proteins containing BT 58.8 1E+02 0.0022 37.5 12.8 56 501-561 475-530 (571)
110 KOG0993 Rab5 GTPase effector R 58.7 0.54 1.2E-05 52.4 -5.9 63 658-725 461-525 (542)
111 cd01221 PH_ephexin Ephexin Ple 58.6 50 0.0011 31.8 8.0 32 95-126 82-119 (125)
112 KOG4424 Predicted Rho/Rac guan 57.2 19 0.00042 42.6 5.9 104 27-136 271-376 (623)
113 cd01263 PH_anillin Anillin Ple 56.6 68 0.0015 30.7 8.6 17 110-126 104-120 (122)
114 KOG0291 WD40-repeat-containing 54.6 5.2E+02 0.011 32.2 24.8 120 314-448 300-424 (893)
115 TIGR03547 muta_rot_YjhT mutatr 54.6 2.3E+02 0.0051 31.6 14.2 16 546-561 314-329 (346)
116 KOG0278 Serine/threonine kinas 54.2 1.5E+02 0.0032 32.0 11.2 93 352-466 133-228 (334)
117 PRK14131 N-acetylneuraminic ac 52.8 3.1E+02 0.0068 31.2 15.0 18 429-446 131-148 (376)
118 PRK14131 N-acetylneuraminic ac 52.4 4E+02 0.0087 30.3 17.1 18 374-391 131-148 (376)
119 PF14593 PH_3: PH domain; PDB: 51.9 1.3E+02 0.0027 28.1 9.3 72 44-131 27-101 (104)
120 KOG0646 WD40 repeat protein [G 50.5 4.6E+02 0.01 30.7 15.1 66 366-444 84-151 (476)
121 cd01243 PH_MRCK MRCK (myotonic 49.7 1.3E+02 0.0029 28.7 9.1 24 106-129 96-119 (122)
122 PHA02790 Kelch-like protein; P 49.0 1.6E+02 0.0034 35.0 12.1 14 378-391 314-327 (480)
123 PF05191 ADK_lid: Adenylate ki 46.4 11 0.00025 28.0 1.2 34 683-728 2-35 (36)
124 PF04841 Vps16_N: Vps16, N-ter 45.6 5.4E+02 0.012 29.8 18.5 69 313-389 82-153 (410)
125 COG3074 Uncharacterized protei 45.1 18 0.00038 30.7 2.3 25 868-892 27-51 (79)
126 PF07569 Hira: TUP1-like enhan 44.4 78 0.0017 33.4 7.7 81 586-666 12-106 (219)
127 cd01249 PH_oligophrenin Oligop 44.3 39 0.00084 31.4 4.6 36 91-126 65-102 (104)
128 PHA02713 hypothetical protein; 42.5 4.1E+02 0.009 32.2 14.5 10 501-510 351-360 (557)
129 TIGR00622 ssl1 transcription f 42.0 18 0.00039 34.0 2.2 34 664-697 54-96 (112)
130 PF04841 Vps16_N: Vps16, N-ter 40.8 6.4E+02 0.014 29.3 16.2 25 587-611 217-243 (410)
131 KOG0649 WD40 repeat protein [G 40.6 3.1E+02 0.0068 29.5 11.0 46 420-466 64-110 (325)
132 PF15404 PH_4: Pleckstrin homo 39.3 2.2E+02 0.0047 29.4 9.6 18 110-127 166-183 (185)
133 PF07975 C1_4: TFIIH C1-like d 38.2 8.6 0.00019 30.9 -0.5 30 668-697 2-36 (51)
134 cd01224 PH_Collybistin Collybi 38.1 1.6E+02 0.0035 27.7 7.7 84 35-126 8-104 (109)
135 smart00706 TECPR Beta propelle 37.6 49 0.0011 23.9 3.5 24 420-443 9-33 (35)
136 KOG1900 Nuclear pore complex, 36.7 3.2E+02 0.007 36.0 12.4 159 432-620 93-278 (1311)
137 PRK00464 nrdR transcriptional 36.6 19 0.0004 36.0 1.4 11 682-692 28-38 (154)
138 smart00706 TECPR Beta propelle 36.2 54 0.0012 23.7 3.5 24 365-388 9-33 (35)
139 KOG3799 Rab3 effector RIM1 and 35.6 14 0.00029 35.4 0.3 53 663-723 63-116 (169)
140 PF15135 UPF0515: Uncharacteri 34.9 37 0.00081 36.1 3.3 46 642-693 111-166 (278)
141 PF06698 DUF1192: Protein of u 34.8 68 0.0015 26.7 4.1 30 861-890 16-45 (59)
142 PF04762 IKI3: IKI3 family; I 33.9 1.1E+03 0.025 30.5 17.0 153 420-610 428-605 (928)
143 PLN00188 enhanced disease resi 32.9 1.2E+02 0.0026 37.4 7.6 95 34-133 9-113 (719)
144 PRK00420 hypothetical protein; 32.8 27 0.00059 32.9 1.8 27 665-691 23-49 (112)
145 PHA02790 Kelch-like protein; P 32.5 2.6E+02 0.0057 33.1 10.5 15 377-391 357-371 (480)
146 TIGR01063 gyrA DNA gyrase, A s 32.4 1.2E+03 0.025 29.9 21.9 121 318-452 543-674 (800)
147 TIGR03548 mutarot_permut cycli 32.2 7.2E+02 0.016 27.4 15.9 18 598-615 216-233 (323)
148 COG5570 Uncharacterized small 30.2 44 0.00096 26.8 2.2 25 865-889 32-56 (57)
149 KOG0317 Predicted E3 ubiquitin 30.2 11 0.00025 40.7 -1.3 46 666-726 240-285 (293)
150 KOG0291 WD40-repeat-containing 30.1 1.2E+03 0.026 29.3 18.7 112 261-393 311-424 (893)
151 KOG2932 E3 ubiquitin ligase in 30.1 19 0.00041 39.3 0.3 49 664-728 89-137 (389)
152 PF01286 XPA_N: XPA protein N- 30.0 34 0.00074 25.2 1.5 13 711-723 21-33 (34)
153 KOG0649 WD40 repeat protein [G 29.6 7.5E+02 0.016 26.8 18.9 77 311-388 62-141 (325)
154 PF09538 FYDLN_acid: Protein o 29.1 28 0.00061 32.6 1.2 26 667-692 11-36 (108)
155 KOG3795 Uncharacterized conser 27.6 39 0.00084 33.9 1.9 21 680-700 13-36 (230)
156 KOG3751 Growth factor receptor 27.1 1.8E+02 0.004 34.4 7.4 93 30-133 319-428 (622)
157 cd01225 PH_Cool_Pix Cool (clon 27.0 4.9E+02 0.011 24.6 8.9 80 40-129 24-109 (111)
158 KOG0705 GTPase-activating prot 26.6 62 0.0013 38.5 3.6 39 92-130 441-480 (749)
159 TIGR02300 FYDLN_acid conserved 25.7 37 0.0008 32.6 1.4 26 667-692 11-36 (129)
160 COG3871 Uncharacterized stress 24.3 3.2E+02 0.0069 27.0 7.4 96 20-134 4-112 (145)
161 PF04216 FdhE: Protein involve 23.9 17 0.00038 40.0 -1.4 74 645-728 177-252 (290)
162 KOG0320 Predicted E3 ubiquitin 23.9 11 0.00025 38.0 -2.5 48 666-726 132-179 (187)
163 KOG2164 Predicted E3 ubiquitin 23.3 27 0.00059 40.8 0.0 52 665-726 186-237 (513)
164 PF10168 Nup88: Nuclear pore c 23.0 1.6E+03 0.034 28.3 17.8 121 267-388 40-176 (717)
165 cd01231 PH_Lnk LNK-family Plec 22.4 3.7E+02 0.0081 25.0 7.0 61 60-127 45-106 (107)
166 PF12341 DUF3639: Protein of u 22.1 1.9E+02 0.0042 20.2 3.9 25 418-442 1-25 (27)
167 KOG1034 Transcriptional repres 21.6 2.3E+02 0.0051 31.7 6.6 57 264-338 324-382 (385)
168 KOG0978 E3 ubiquitin ligase in 21.4 13 0.00029 45.3 -3.0 47 665-725 643-689 (698)
169 KOG0930 Guanine nucleotide exc 21.2 4E+02 0.0086 29.2 8.0 98 31-131 262-377 (395)
170 PF12341 DUF3639: Protein of u 20.9 1.9E+02 0.0042 20.2 3.7 25 586-610 1-25 (27)
171 PF15410 PH_9: Pleckstrin homo 20.5 3.4E+02 0.0073 25.6 6.9 35 94-128 82-117 (119)
172 KOG3576 Ovo and related transc 20.5 23 0.0005 36.5 -1.1 14 684-697 175-188 (267)
173 PF07304 SRA1: Steroid recepto 20.3 22 0.00048 35.6 -1.3 29 107-135 113-141 (157)
174 PF15616 TerY-C: TerY-C metal 20.1 86 0.0019 30.4 2.7 42 664-726 76-117 (131)
No 1
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]
Probab=100.00 E-value=1.1e-46 Score=412.86 Aligned_cols=364 Identities=25% Similarity=0.477 Sum_probs=294.9
Q ss_pred cccCCCCcEEEEcCCCCCCccCCCCCCCCccccccccCCCceEeccc--CCCCEEEEEecCCeEEEEEcCCcEEEEeCCC
Q 002677 263 DDGDALGDVFIWGEGTGDGVLGGGLNRVGSCFGVKMDSSLPKALESA--VVLDVQNIACGGRHAALVNKQGEVFSWGEES 340 (893)
Q Consensus 263 ~~l~s~G~Vy~WG~n~~~GqLG~g~~~~~~~~~~~~~~~~P~~v~~~--~~~~V~~Ia~G~~hs~~Lt~dG~Vy~wG~N~ 340 (893)
.....-.+||+||.|. .++||+|.+. +.+..|..+... ....|++++||+.|+++|+.||.||+||.|.
T Consensus 62 ~~~~~~~~v~~~Gsn~-~~eLGlg~de--------~~~~~P~~~~~~~~d~~~i~~~acGg~hsl~ld~Dg~lyswG~N~ 132 (476)
T COG5184 62 HLLVKMASVYSWGSNG-MNELGLGNDE--------TKVDRPQLNPFGRIDKASIIKIACGGNHSLGLDHDGNLYSWGDND 132 (476)
T ss_pred hhhhheeeeEEEecCc-ceeeccCCch--------hcccCceecCcccccceeeEEeecCCceEEeecCCCCEEEeccCc
Confidence 4577889999999999 9999999843 225677766655 4567999999999999999999999999999
Q ss_pred CCCcCCCCC----------------CCccccEEecc----cCCCcEEEEEeCCceEEEEEcCCCEEEcCCCCCCCCccCC
Q 002677 341 GGRLGHGVD----------------SDVLHPKLIDA----LSNMNIELVACGEYHTCAVTLSGDLYTWGDGTYNFGLLGH 400 (893)
Q Consensus 341 ~GqLG~g~~----------------~~~~~P~~V~~----l~~~~I~~Va~G~~hs~aLT~dG~Vy~wG~n~~~~GqLG~ 400 (893)
.|+||.... .....|..|.. ....+|++++||++++++|+++|+||.||.+ ..+.++.
T Consensus 133 ~G~Lgr~~~~~~~~~~~~~~~~~~~~~~~tP~~v~~~s~~~s~~~vv~l~cg~e~svil~~~G~V~~~gt~--r~~e~~~ 210 (476)
T COG5184 133 DGALGRDIHKDICDQNNDIIDFDDYELESTPFKVPGGSSAKSHLRVVKLACGWEISVILTADGRVYSWGTF--RCGELGQ 210 (476)
T ss_pred ccccccccccccccccccccccchhhcccCCceeeccccccCChheEEeecCCceEEEEccCCcEEEecCc--ccccccc
Confidence 999997661 12567888876 2234899999999999999999999999998 4455555
Q ss_pred CCCc------ceeeeeeecCCCCCceEEEEeeCCCeEEEEecCCeEEEeecCCCcccCCCCCcccccceeeeccCCC-eE
Q 002677 401 GNEV------SHWVPKRVNGPLEGIHVSSISCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRKSVSIPREVESLKGL-RT 473 (893)
Q Consensus 401 g~~~------~~~~P~~v~~~l~~~~I~~Ia~G~~hs~aLt~~G~Vy~wG~n~~GQLG~g~~~~~~~P~~V~~l~~~-~I 473 (893)
+... .+.+|.++. ...|+++++|..|.++|+++|+||+||+|.+||||....+....+..+..+... .|
T Consensus 211 g~~~~s~k~~~~~~p~~v~----~~~i~qla~G~dh~i~lt~~G~vy~~Gs~qkgqlG~~~~e~~~~~~lv~~~f~i~~i 286 (476)
T COG5184 211 GSYKNSQKTSIQFTPLKVP----KKAIVQLAAGADHLIALTNEGKVYGWGSNQKGQLGRPTSERLKLVVLVGDPFAIRNI 286 (476)
T ss_pred ccccccccceeeeeeeecC----chheeeeccCCceEEEEecCCcEEEecCCcccccCCchhhhcccccccCChhhhhhh
Confidence 5322 234555553 347999999999999999999999999999999999887776666666443332 36
Q ss_pred EEEEeCCceEEEEEEeeecCCCccccCCCcEEEEeCCCCCCcCCCCC----CceeecEEeeccCCCceeeeecCCcEEEE
Q 002677 474 VRAACGVWHTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDK----EAKLVPTCVAALVEPNFCRVACGHSLTVA 549 (893)
Q Consensus 474 ~~Va~G~~ht~alte~~~~~s~~~~~~~G~ly~wG~n~~GQLG~g~~----~~~~~P~~V~~l~~~~I~~Ia~G~~htva 549 (893)
..|+||.+|++||. .+|++|+||.|-+||||.+.. .....|+....+.+..|.+|++|+.|+++
T Consensus 287 ~~vacG~~h~~al~------------~~G~i~a~G~n~fgqlg~~~~~~~~a~~tk~~~~~~~~~~~i~~is~ge~H~l~ 354 (476)
T COG5184 287 KYVACGKDHSLALD------------EDGEIYAWGVNIFGQLGAGSDGEIGALTTKPNYKQLLSGVTICSISAGESHSLI 354 (476)
T ss_pred hhcccCcceEEEEc------------CCCeEEEeccchhcccccCcccccceeeccccccccCCCceEEEEecCcceEEE
Confidence 88999999999998 499999999999999999821 22356666667777789999999999999
Q ss_pred EecCCcEEEEcCCCCCcCCCCCCCCC---cCceeccccCCCceEEEEecCCeeEEEecCCeEEEecCCCCCCCCCCCCC-
Q 002677 550 LTTSGHVYTMGSPVYGQLGNPQADGK---LPNRVEGKLSKSFVEEIACGSYHVAVLTSKTEVYTWGKGANGRLGHGDTD- 625 (893)
Q Consensus 550 Lt~dG~Vy~wG~N~~GQLG~~~~~~~---~P~~v~~~l~~~~V~~Is~G~~Ht~aLt~~G~Vy~WG~N~~GQLG~g~~~- 625 (893)
|..+|.||+||.+..+|||.+..... .|..+. ....+.+|+||..|+++.+.+|+||.||+|.+|+||.|+..
T Consensus 355 L~~~G~l~a~Gr~~~~qlg~~~~~~~~~~~~~~ls---~~~~~~~v~~gt~~~~~~t~~gsvy~wG~ge~gnlG~g~~~~ 431 (476)
T COG5184 355 LRKDGTLYAFGRGDRGQLGIQEEITIDVSTPTKLS---VAIKLEQVACGTHHNIARTDDGSVYSWGWGEHGNLGNGPKEA 431 (476)
T ss_pred EecCceEEEecCCccccccCcccceeecCCccccc---cccceEEEEecCccceeeccCCceEEecCchhhhccCCchhh
Confidence 99999999999999999999874321 222222 13459999999999999999999999999999999999755
Q ss_pred CCcccEEec--ccCCCcEEEEccCCCccceeee
Q 002677 626 DRNSPSLVE--ALKDKQVKSIACGTNFTAAICL 656 (893)
Q Consensus 626 ~~~~P~~V~--~l~~~~V~~IacG~~hT~al~~ 656 (893)
+...|+.+. .+....++..-||.++.++.-.
T Consensus 432 ~~~~pt~i~~~~~~~~~~i~~g~~~~~~v~~~~ 464 (476)
T COG5184 432 DVLVPTLIRQPLLSGHNIILAGYGNQFSVIEET 464 (476)
T ss_pred hccccccccccccCCCceEEeccCcceEEEecc
Confidence 556677776 3677788888888888776643
No 2
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown]
Probab=100.00 E-value=7.4e-41 Score=344.04 Aligned_cols=361 Identities=25% Similarity=0.454 Sum_probs=301.2
Q ss_pred CCCcEEEEcCCCCCCccCCCCCCCCccccccccCCCceEecccCCCCEEEEEec--CCeEEEEEcCCcEEEEeCCCCCCc
Q 002677 267 ALGDVFIWGEGTGDGVLGGGLNRVGSCFGVKMDSSLPKALESAVVLDVQNIACG--GRHAALVNKQGEVFSWGEESGGRL 344 (893)
Q Consensus 267 s~G~Vy~WG~n~~~GqLG~g~~~~~~~~~~~~~~~~P~~v~~~~~~~V~~Ia~G--~~hs~~Lt~dG~Vy~wG~N~~GqL 344 (893)
.-|++...|... -.+.|.-+- ........|.++..+.+.+|+-|+.| ..|+++|+-+|+.|+||.|..|||
T Consensus 18 ~~g~ml~~g~v~-wd~tgkRd~------~~~~NL~sphR~~~l~gv~iR~VasG~~aaH~vli~megk~~~wGRNekGQL 90 (443)
T KOG1427|consen 18 KGGEMLFCGAVA-WDITGKRDG------AMEGNLVSPHRLRPLVGVNIRFVASGCAAAHCVLIDMEGKCYTWGRNEKGQL 90 (443)
T ss_pred CCccEEEeccch-hhhhccccc------ccccccccceeccccccceEEEEecccchhhEEEEecccceeecccCccCcc
Confidence 447777777766 555554431 11235678999999888999999988 679999999999999999999999
Q ss_pred CCCCCCCccccEEecccCCCcEEEEEeCCceEEEEEcCCCEEEcCCCCCCCCccCCCCCcce-eeeeeecCCCCCceEEE
Q 002677 345 GHGVDSDVLHPKLIDALSNMNIELVACGEYHTCAVTLSGDLYTWGDGTYNFGLLGHGNEVSH-WVPKRVNGPLEGIHVSS 423 (893)
Q Consensus 345 G~g~~~~~~~P~~V~~l~~~~I~~Va~G~~hs~aLT~dG~Vy~wG~n~~~~GqLG~g~~~~~-~~P~~v~~~l~~~~I~~ 423 (893)
|+++......|+.|..|...+|++.+||++|+++||++|.||.+|.| .+||||.++.... ..|..+. ..+..|+.
T Consensus 91 GhgD~k~~e~Ptvi~gL~~~~iv~AA~GrnHTl~ltdtG~v~afGeN--K~GQlGlgn~~~~v~s~~~~~--~~~~~v~~ 166 (443)
T KOG1427|consen 91 GHGDMKQRERPTVISGLSKHKIVKAAAGRNHTLVLTDTGQVLAFGEN--KYGQLGLGNAKNEVESTPLPC--VVSDEVTN 166 (443)
T ss_pred CccchhhccCCchhhhhhhhhHHHHhhccCcEEEEecCCcEEEeccc--ccccccccccccccccCCCcc--ccCcccee
Confidence 99999999999999999999999999999999999999999999999 5699999986542 2222221 22447999
Q ss_pred EeeCCCeEEEEecCCeEEEeecCCCcccCCCCCcc--------------cccceeeeccCCCeEEEEEeCCceEEEEEEe
Q 002677 424 ISCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRKS--------------VSIPREVESLKGLRTVRAACGVWHTAAVVEV 489 (893)
Q Consensus 424 Ia~G~~hs~aLt~~G~Vy~wG~n~~GQLG~g~~~~--------------~~~P~~V~~l~~~~I~~Va~G~~ht~alte~ 489 (893)
|+||..+++.|+..+.|.++|...||||||+.... .+.|.-|..+.++.|++++||.+||+|+.
T Consensus 167 v~cga~ftv~l~~~~si~t~glp~ygqlgh~td~~~~~~~~~~~~~~e~~pr~~~i~~~dgvqiv~~acg~nhtvavd-- 244 (443)
T KOG1427|consen 167 VACGADFTVWLSSTESILTAGLPQYGQLGHGTDNEFNMKDSSVRLAYEAQPRPKAIASLDGVQIVKVACGTNHTVAVD-- 244 (443)
T ss_pred eccccceEEEeecccceeecCCccccccccCcchhhccccccceeeeecCCCccccccccceeeEEEeccCcceeeec--
Confidence 99999999999999999999999999999985432 34577778888999999999999999998
Q ss_pred eecCCCccccCCCcEEEEeCCCCCCcCCCCCCceeecEEeeccCC--CceeeeecCCcEEEEEecCCcEEEEcCCCCCcC
Q 002677 490 MVGNSSSSNCSSGKLFTWGDGDKGRLGHGDKEAKLVPTCVAALVE--PNFCRVACGHSLTVALTTSGHVYTMGSPVYGQL 567 (893)
Q Consensus 490 ~~~~s~~~~~~~G~ly~wG~n~~GQLG~g~~~~~~~P~~V~~l~~--~~I~~Ia~G~~htvaLt~dG~Vy~wG~N~~GQL 567 (893)
.+++||+||.+.||+|||....+...|..+..+.- .--.++.||+..++++.+-|.+|.||.+..
T Consensus 245 ----------~nkrVysWGFGGyGRLGHaEqKDEmvpRlik~Fd~~~rg~~~~~~g~t~Sl~v~e~G~Lf~~g~~k~--- 311 (443)
T KOG1427|consen 245 ----------KNKRVYSWGFGGYGRLGHAEQKDEMVPRLIKVFDRNNRGPPNAILGYTGSLNVAEGGQLFMWGKIKN--- 311 (443)
T ss_pred ----------CCccEEEeccccccccccccchhhHHHHHHHHhcCCCCCCcceeeecccceeecccceeEEeecccc---
Confidence 69999999999999999999999999998886543 335689999999999999999999997643
Q ss_pred CCCCCCCCcCceeccccCCCceEEEEecCCeeEEEecCCeEEEecCCCCCCCCCCC--CCCCcccEEecccCCCcEEEEc
Q 002677 568 GNPQADGKLPNRVEGKLSKSFVEEIACGSYHVAVLTSKTEVYTWGKGANGRLGHGD--TDDRNSPSLVEALKDKQVKSIA 645 (893)
Q Consensus 568 G~~~~~~~~P~~v~~~l~~~~V~~Is~G~~Ht~aLt~~G~Vy~WG~N~~GQLG~g~--~~~~~~P~~V~~l~~~~V~~Ia 645 (893)
...+..+|.++.. +.+..+..|.||..|.++ ..+.....||...+|.++-|. ......|..|..+.+.+|..|+
T Consensus 312 --~ge~~mypkP~~d-lsgwnl~~~~~~~~h~~v-~ad~s~i~wg~~~~g~~lggp~~Qkss~~Pk~v~~l~~i~v~~Va 387 (443)
T KOG1427|consen 312 --NGEDWMYPKPMMD-LSGWNLRWMDSGSMHHFV-GADSSCISWGHAQYGELLGGPNGQKSSAAPKKVDMLEGIHVMGVA 387 (443)
T ss_pred --CcccccCCCchhh-cCCccCCCcCccceeeee-cccccccccccccccccccCccccccccCccccchhcceecccee
Confidence 3344557777764 677889999999999775 567789999998887765443 3345679999999999999999
Q ss_pred cCCCccceeeee
Q 002677 646 CGTNFTAAICLH 657 (893)
Q Consensus 646 cG~~hT~al~~~ 657 (893)
||..|+++|+..
T Consensus 388 mGysHs~vivd~ 399 (443)
T KOG1427|consen 388 MGYSHSMVIVDR 399 (443)
T ss_pred eccceEEEEEcc
Confidence 999999999753
No 3
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]
Probab=100.00 E-value=4.9e-39 Score=352.70 Aligned_cols=339 Identities=25% Similarity=0.434 Sum_probs=265.2
Q ss_pred EeeccccccCCCCCccccCCCCcEEEEcCCCCCCccCCCCCC-------CCccccccccCCCceEecc----cCCCCEEE
Q 002677 248 SLSSAVSSSSQGSGHDDGDALGDVFIWGEGTGDGVLGGGLNR-------VGSCFGVKMDSSLPKALES----AVVLDVQN 316 (893)
Q Consensus 248 ~~~~~~~~~s~G~~~~~l~s~G~Vy~WG~n~~~GqLG~g~~~-------~~~~~~~~~~~~~P~~v~~----~~~~~V~~ 316 (893)
...+.+....+|-|..+++.+|+||+||.|. .|+||.-... .........-..+|..|+. ...++|++
T Consensus 102 d~~~i~~~acGg~hsl~ld~Dg~lyswG~N~-~G~Lgr~~~~~~~~~~~~~~~~~~~~~~~tP~~v~~~s~~~s~~~vv~ 180 (476)
T COG5184 102 DKASIIKIACGGNHSLGLDHDGNLYSWGDND-DGALGRDIHKDICDQNNDIIDFDDYELESTPFKVPGGSSAKSHLRVVK 180 (476)
T ss_pred cceeeEEeecCCceEEeecCCCCEEEeccCc-ccccccccccccccccccccccchhhcccCCceeeccccccCChheEE
Confidence 4433333334445889999999999999999 9999976510 0001122233567887776 23458999
Q ss_pred EEecCCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCccc----cEEecccCCCcEEEEEeCCceEEEEEcCCCEEEcCCCC
Q 002677 317 IACGGRHAALVNKQGEVFSWGEESGGRLGHGVDSDVLH----PKLIDALSNMNIELVACGEYHTCAVTLSGDLYTWGDGT 392 (893)
Q Consensus 317 Ia~G~~hs~~Lt~dG~Vy~wG~N~~GqLG~g~~~~~~~----P~~V~~l~~~~I~~Va~G~~hs~aLT~dG~Vy~wG~n~ 392 (893)
++||++++++|+++|+||+||....+.++.+...+... ++++... ...|.++++|..|.++|+++|+||.||+|
T Consensus 181 l~cg~e~svil~~~G~V~~~gt~r~~e~~~g~~~~s~k~~~~~~p~~v~-~~~i~qla~G~dh~i~lt~~G~vy~~Gs~- 258 (476)
T COG5184 181 LACGWEISVILTADGRVYSWGTFRCGELGQGSYKNSQKTSIQFTPLKVP-KKAIVQLAAGADHLIALTNEGKVYGWGSN- 258 (476)
T ss_pred eecCCceEEEEccCCcEEEecCccccccccccccccccceeeeeeeecC-chheeeeccCCceEEEEecCCcEEEecCC-
Confidence 99999999999999999999999888888885443322 4444333 45899999999999999999999999999
Q ss_pred CCCCccCCCCCcceeeeeeecCCCCCceEEEEeeCCCeEEEEecCCeEEEeecCCCcccCCCCC----cccccceeeecc
Q 002677 393 YNFGLLGHGNEVSHWVPKRVNGPLEGIHVSSISCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDR----KSVSIPREVESL 468 (893)
Q Consensus 393 ~~~GqLG~g~~~~~~~P~~v~~~l~~~~I~~Ia~G~~hs~aLt~~G~Vy~wG~n~~GQLG~g~~----~~~~~P~~V~~l 468 (893)
.+||||.........+..+..++.-..|+.|+||.+|+++|+++|+||+||.|-|||||.+.. .....|.....+
T Consensus 259 -qkgqlG~~~~e~~~~~~lv~~~f~i~~i~~vacG~~h~~al~~~G~i~a~G~n~fgqlg~~~~~~~~a~~tk~~~~~~~ 337 (476)
T COG5184 259 -QKGQLGRPTSERLKLVVLVGDPFAIRNIKYVACGKDHSLALDEDGEIYAWGVNIFGQLGAGSDGEIGALTTKPNYKQLL 337 (476)
T ss_pred -cccccCCchhhhcccccccCChhhhhhhhhcccCcceEEEEcCCCeEEEeccchhcccccCcccccceeeccccccccC
Confidence 679999998877666666665555456899999999999999999999999999999999822 234566666777
Q ss_pred CCCeEEEEEeCCceEEEEEEeeecCCCccccCCCcEEEEeCCCCCCcCCCCCC--ceeecEEeeccCCCceeeeecCCcE
Q 002677 469 KGLRTVRAACGVWHTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDKE--AKLVPTCVAALVEPNFCRVACGHSL 546 (893)
Q Consensus 469 ~~~~I~~Va~G~~ht~alte~~~~~s~~~~~~~G~ly~wG~n~~GQLG~g~~~--~~~~P~~V~~l~~~~I~~Ia~G~~h 546 (893)
.+..|..+++|..|+++|. .+|.||+||.++.+|||+.... ....|+.+. ...++.+|+||..|
T Consensus 338 ~~~~i~~is~ge~H~l~L~------------~~G~l~a~Gr~~~~qlg~~~~~~~~~~~~~~ls--~~~~~~~v~~gt~~ 403 (476)
T COG5184 338 SGVTICSISAGESHSLILR------------KDGTLYAFGRGDRGQLGIQEEITIDVSTPTKLS--VAIKLEQVACGTHH 403 (476)
T ss_pred CCceEEEEecCcceEEEEe------------cCceEEEecCCccccccCcccceeecCCccccc--cccceEEEEecCcc
Confidence 7888999999999999998 4999999999999999999844 344444443 23679999999999
Q ss_pred EEEEecCCcEEEEcCCCCCcCCCCCCCCC--cCceeccc-cCCCceEEEEecCCeeEEEec
Q 002677 547 TVALTTSGHVYTMGSPVYGQLGNPQADGK--LPNRVEGK-LSKSFVEEIACGSYHVAVLTS 604 (893)
Q Consensus 547 tvaLt~dG~Vy~wG~N~~GQLG~~~~~~~--~P~~v~~~-l~~~~V~~Is~G~~Ht~aLt~ 604 (893)
+++.+.+|.||.||.+++|+||++..... .|+.+..+ +....++..-||....++...
T Consensus 404 ~~~~t~~gsvy~wG~ge~gnlG~g~~~~~~~~pt~i~~~~~~~~~~i~~g~~~~~~v~~~~ 464 (476)
T COG5184 404 NIARTDDGSVYSWGWGEHGNLGNGPKEADVLVPTLIRQPLLSGHNIILAGYGNQFSVIEET 464 (476)
T ss_pred ceeeccCCceEEecCchhhhccCCchhhhccccccccccccCCCceEEeccCcceEEEecc
Confidence 99999999999999999999998876544 45555542 355667777777777776653
No 4
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown]
Probab=100.00 E-value=1e-36 Score=313.59 Aligned_cols=311 Identities=25% Similarity=0.435 Sum_probs=259.4
Q ss_pred CccccCCCCcEEEEcCCCCCCccCCCCCCCCccccccccCCCceEecccCCCCEEEEEecCCeEEEEEcCCcEEEEeCCC
Q 002677 261 GHDDGDALGDVFIWGEGTGDGVLGGGLNRVGSCFGVKMDSSLPKALESAVVLDVQNIACGGRHAALVNKQGEVFSWGEES 340 (893)
Q Consensus 261 ~~~~l~s~G~Vy~WG~n~~~GqLG~g~~~~~~~~~~~~~~~~P~~v~~~~~~~V~~Ia~G~~hs~~Lt~dG~Vy~wG~N~ 340 (893)
|...|+-+|+.|.||.|. .||||+|+ ...+..|+.|+.+...+|++.|||++|+++||++|+||+||+|.
T Consensus 69 H~vli~megk~~~wGRNe-kGQLGhgD---------~k~~e~Ptvi~gL~~~~iv~AA~GrnHTl~ltdtG~v~afGeNK 138 (443)
T KOG1427|consen 69 HCVLIDMEGKCYTWGRNE-KGQLGHGD---------MKQRERPTVISGLSKHKIVKAAAGRNHTLVLTDTGQVLAFGENK 138 (443)
T ss_pred hEEEEecccceeecccCc-cCccCccc---------hhhccCCchhhhhhhhhHHHHhhccCcEEEEecCCcEEEecccc
Confidence 556899999999999999 99999997 35677899999999999999999999999999999999999999
Q ss_pred CCCcCCCCCCC-ccccEEecccCCCcEEEEEeCCceEEEEEcCCCEEEcCCCCCCCCccCCCCCcc--------------
Q 002677 341 GGRLGHGVDSD-VLHPKLIDALSNMNIELVACGEYHTCAVTLSGDLYTWGDGTYNFGLLGHGNEVS-------------- 405 (893)
Q Consensus 341 ~GqLG~g~~~~-~~~P~~V~~l~~~~I~~Va~G~~hs~aLT~dG~Vy~wG~n~~~~GqLG~g~~~~-------------- 405 (893)
+||||.+.... +..|.++. .-...|..|+||..+++.|+..+.|.++|.- .+||||++.+..
T Consensus 139 ~GQlGlgn~~~~v~s~~~~~-~~~~~v~~v~cga~ftv~l~~~~si~t~glp--~ygqlgh~td~~~~~~~~~~~~~~e~ 215 (443)
T KOG1427|consen 139 YGQLGLGNAKNEVESTPLPC-VVSDEVTNVACGADFTVWLSSTESILTAGLP--QYGQLGHGTDNEFNMKDSSVRLAYEA 215 (443)
T ss_pred cccccccccccccccCCCcc-ccCccceeeccccceEEEeecccceeecCCc--cccccccCcchhhccccccceeeeec
Confidence 99999998654 33444333 3345799999999999999999999999999 569999997653
Q ss_pred eeeeeeecCCCCCceEEEEeeCCCeEEEEecCCeEEEeecCCCcccCCCCCcccccceeeeccC--CCeEEEEEeCCceE
Q 002677 406 HWVPKRVNGPLEGIHVSSISCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRKSVSIPREVESLK--GLRTVRAACGVWHT 483 (893)
Q Consensus 406 ~~~P~~v~~~l~~~~I~~Ia~G~~hs~aLt~~G~Vy~wG~n~~GQLG~g~~~~~~~P~~V~~l~--~~~I~~Va~G~~ht 483 (893)
+..|..|. ++++++|++++||.+|++++++++.||+||.+.||.|||........|++++.+. +.--..+.||+..+
T Consensus 216 ~pr~~~i~-~~dgvqiv~~acg~nhtvavd~nkrVysWGFGGyGRLGHaEqKDEmvpRlik~Fd~~~rg~~~~~~g~t~S 294 (443)
T KOG1427|consen 216 QPRPKAIA-SLDGVQIVKVACGTNHTVAVDKNKRVYSWGFGGYGRLGHAEQKDEMVPRLIKVFDRNNRGPPNAILGYTGS 294 (443)
T ss_pred CCCccccc-cccceeeEEEeccCcceeeecCCccEEEeccccccccccccchhhHHHHHHHHhcCCCCCCcceeeecccc
Confidence 22333343 4788999999999999999999999999999999999999999999999987553 44567889999999
Q ss_pred EEEEEeeecCCCccccCCCcEEEEeCCCCCCcCCCCCCceeecEEeeccCCCceeeeecCCcEEEEEecCCcEEEEcCCC
Q 002677 484 AAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDKEAKLVPTCVAALVEPNFCRVACGHSLTVALTTSGHVYTMGSPV 563 (893)
Q Consensus 484 ~alte~~~~~s~~~~~~~G~ly~wG~n~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Ia~G~~htvaLt~dG~Vy~wG~N~ 563 (893)
+++.| -|.||.||.+.. ..+....|..+..+...++..+-||..|.++ ..|..+..||...
T Consensus 295 l~v~e------------~G~Lf~~g~~k~------~ge~~mypkP~~dlsgwnl~~~~~~~~h~~v-~ad~s~i~wg~~~ 355 (443)
T KOG1427|consen 295 LNVAE------------GGQLFMWGKIKN------NGEDWMYPKPMMDLSGWNLRWMDSGSMHHFV-GADSSCISWGHAQ 355 (443)
T ss_pred eeecc------------cceeEEeecccc------CcccccCCCchhhcCCccCCCcCccceeeee-ccccccccccccc
Confidence 99875 899999998764 3456678888888999999999999888654 5666899999888
Q ss_pred CCcCCCC-C--CCCCcCceeccccCCCceEEEEecCCeeEEEecC
Q 002677 564 YGQLGNP-Q--ADGKLPNRVEGKLSKSFVEEIACGSYHVAVLTSK 605 (893)
Q Consensus 564 ~GQLG~~-~--~~~~~P~~v~~~l~~~~V~~Is~G~~Ht~aLt~~ 605 (893)
+|.++-+ + .....|..+. .+.+.+|.+|++|..|+++|..+
T Consensus 356 ~g~~lggp~~Qkss~~Pk~v~-~l~~i~v~~VamGysHs~vivd~ 399 (443)
T KOG1427|consen 356 YGELLGGPNGQKSSAAPKKVD-MLEGIHVMGVAMGYSHSMVIVDR 399 (443)
T ss_pred ccccccCccccccccCccccc-hhcceeccceeeccceEEEEEcc
Confidence 8766533 3 2334676665 46777899999999999998754
No 5
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.93 E-value=7.8e-26 Score=257.24 Aligned_cols=307 Identities=21% Similarity=0.318 Sum_probs=230.3
Q ss_pred cccCCCCcEEEEcCCCCCCccCCCCCCCCccccccccCCCceEecccC--CCCEEEEEecCCeEEEEEcCCcEEEEeCCC
Q 002677 263 DDGDALGDVFIWGEGTGDGVLGGGLNRVGSCFGVKMDSSLPKALESAV--VLDVQNIACGGRHAALVNKQGEVFSWGEES 340 (893)
Q Consensus 263 ~~l~s~G~Vy~WG~n~~~GqLG~g~~~~~~~~~~~~~~~~P~~v~~~~--~~~V~~Ia~G~~hs~~Lt~dG~Vy~wG~N~ 340 (893)
.+.|...|||+||.|. +..||.|+. .....|.++.... +.-+.+|+.+..|++++++.|+||++|.+.
T Consensus 136 ~~~d~pndvy~wG~N~-N~tLGign~---------~~~~~Pe~Vdlf~~Sg~~~~qV~l~kfHSvfl~~kgqvY~cGhG~ 205 (1267)
T KOG0783|consen 136 PVLDLPNDVYGWGTNV-NNTLGIGNG---------KEPSSPERVDLFKTSGQLFSQVQLSKFHSVFLTEKGQVYVCGHGA 205 (1267)
T ss_pred cccCCccceeEecccc-cccccccCC---------CCCCChHHhHHHHhccHHHHHHHHhhceeeEecCCCcEEEeccCC
Confidence 4578889999999999 999999983 3445666665433 334889999999999999999999999999
Q ss_pred CCCcCCCCCCCccccEEecccCCCcEEEEEeCCceEEEEEcCCCEEEcCCCCCCCCccCCCCCcc-eeeeeeecCC-CCC
Q 002677 341 GGRLGHGVDSDVLHPKLIDALSNMNIELVACGEYHTCAVTLSGDLYTWGDGTYNFGLLGHGNEVS-HWVPKRVNGP-LEG 418 (893)
Q Consensus 341 ~GqLG~g~~~~~~~P~~V~~l~~~~I~~Va~G~~hs~aLT~dG~Vy~wG~n~~~~GqLG~g~~~~-~~~P~~v~~~-l~~ 418 (893)
+|+||+|+......|++|+.|.+.+|.+|+....|+++||++|-||+||.| ..+|||..+... ...|.+|... +.+
T Consensus 206 GGRlG~gdeq~~~iPkrV~gL~gh~~~qisvs~~HslvLT~~g~Vys~GlN--~~hqLG~~~~~~~~~~p~qI~a~r~kg 283 (1267)
T KOG0783|consen 206 GGRLGFGDEQYNFIPKRVPGLIGHKVIQISVSHTHSLVLTKFGSVYSWGLN--GSHQLGLSNDELKKDDPIQITARRIKG 283 (1267)
T ss_pred CCccCcCcccccccccccccccccceEEEEeecceeEEEeecceEEEeecC--cccccCCcCchhhcCchhhhhhHhhcc
Confidence 999999999999999999999999999999999999999999999999999 679999987653 3344444321 223
Q ss_pred c-eEEEEeeCCCeEEEEecCCeEEEeecCCCcccCCCCC-cccccceeeeccCCCeEEEEEeCCceEEEEEEeeecCCCc
Q 002677 419 I-HVSSISCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDR-KSVSIPREVESLKGLRTVRAACGVWHTAAVVEVMVGNSSS 496 (893)
Q Consensus 419 ~-~I~~Ia~G~~hs~aLt~~G~Vy~wG~n~~GQLG~g~~-~~~~~P~~V~~l~~~~I~~Va~G~~ht~alte~~~~~s~~ 496 (893)
. .|+.|++|..|+++.|+. .||+||.| .||||..+. ..+..|+.+..+ ...|..|+|...-|+++++
T Consensus 284 ~~~iIgvaAg~~hsVawt~~-~VY~wGlN-~GQlGi~~n~~~Vt~Pr~l~~~-~~~v~~v~a~~~ATVc~~~-------- 352 (1267)
T KOG0783|consen 284 FKQIIGVAAGKSHSVAWTDT-DVYSWGLN-NGQLGISDNISVVTTPRRLAGL-LSPVIHVVATTRATVCLLQ-------- 352 (1267)
T ss_pred hhhhhhhhcccceeeeeecc-eEEEeccc-CceecCCCCCceeecchhhccc-ccceEEEEecCccEEEEec--------
Confidence 2 799999999999999966 79999998 599998765 446778666433 3478999999999999984
Q ss_pred cccCCCcEEEEeCCCCCCcCCCCCCceeecEEeec----cCCCceeeeecCCcEEEEEecCCcEEEEcCCCCCcCCCCCC
Q 002677 497 SNCSSGKLFTWGDGDKGRLGHGDKEAKLVPTCVAA----LVEPNFCRVACGHSLTVALTTSGHVYTMGSPVYGQLGNPQA 572 (893)
Q Consensus 497 ~~~~~G~ly~wG~n~~GQLG~g~~~~~~~P~~V~~----l~~~~I~~Ia~G~~htvaLt~dG~Vy~wG~N~~GQLG~~~~ 572 (893)
++.+|++-+-..-.+. .+.....-..|.. +.-.++.+..+...-.++||+-|+||.|-++..-.- .
T Consensus 353 ----~~~i~~~ady~~~k~~--~n~~~lks~~V~gg~l~~~~~~~~k~~a~~~kll~lte~g~Vy~w~s~ns~~~----~ 422 (1267)
T KOG0783|consen 353 ----NNSIIAFADYNQVKLP--FNVDFLKSLKVTGGPLSLTRFNVRKLLASENKLLVLTELGEVYEWDSKNSTRT----S 422 (1267)
T ss_pred ----CCcEEEEecccceecC--cchhccceeEEecCccchhhhhhhhcchhhhheeeeccCCeEEEEecCCCcee----e
Confidence 8999998763322221 1111112222221 111355667777788899999999999997643110 0
Q ss_pred CCCcCceeccccCCCceEEEEecCCeeEEEecCCeE
Q 002677 573 DGKLPNRVEGKLSKSFVEEIACGSYHVAVLTSKTEV 608 (893)
Q Consensus 573 ~~~~P~~v~~~l~~~~V~~Is~G~~Ht~aLt~~G~V 608 (893)
-...|..+ ..|.+|+--.+..+++|.||.+
T Consensus 423 c~ftp~r~------~~isdIa~~~N~~~~~t~dGc~ 452 (1267)
T KOG0783|consen 423 CKFTPLRI------FEISDIAWTANSLILCTRDGCW 452 (1267)
T ss_pred eeccccee------eehhhhhhccceEEEEecCcce
Confidence 01123332 2366788778899999999943
No 6
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.93 E-value=1.5e-25 Score=255.01 Aligned_cols=305 Identities=24% Similarity=0.378 Sum_probs=231.3
Q ss_pred EEEEcCCcEEEEeCCCCCCcCCCCCCCccccEEecccC--CCcEEEEEeCCceEEEEEcCCCEEEcCCCCCCCCccCCCC
Q 002677 325 ALVNKQGEVFSWGEESGGRLGHGVDSDVLHPKLIDALS--NMNIELVACGEYHTCAVTLSGDLYTWGDGTYNFGLLGHGN 402 (893)
Q Consensus 325 ~~Lt~dG~Vy~wG~N~~GqLG~g~~~~~~~P~~V~~l~--~~~I~~Va~G~~hs~aLT~dG~Vy~wG~n~~~~GqLG~g~ 402 (893)
.+++...+||.||.|.+.-||+|.......|.+|..+. +.-+.+|+.+.+|++++++.|+||++|.+ .-|.||+|+
T Consensus 136 ~~~d~pndvy~wG~N~N~tLGign~~~~~~Pe~Vdlf~~Sg~~~~qV~l~kfHSvfl~~kgqvY~cGhG--~GGRlG~gd 213 (1267)
T KOG0783|consen 136 PVLDLPNDVYGWGTNVNNTLGIGNGKEPSSPERVDLFKTSGQLFSQVQLSKFHSVFLTEKGQVYVCGHG--AGGRLGFGD 213 (1267)
T ss_pred cccCCccceeEecccccccccccCCCCCCChHHhHHHHhccHHHHHHHHhhceeeEecCCCcEEEeccC--CCCccCcCc
Confidence 35566799999999999999999999999999999775 45678999999999999999999999999 679999999
Q ss_pred CcceeeeeeecCCCCCceEEEEeeCCCeEEEEecCCeEEEeecCCCcccCCCCC-cccccceeeec--cCCC-eEEEEEe
Q 002677 403 EVSHWVPKRVNGPLEGIHVSSISCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDR-KSVSIPREVES--LKGL-RTVRAAC 478 (893)
Q Consensus 403 ~~~~~~P~~v~~~l~~~~I~~Ia~G~~hs~aLt~~G~Vy~wG~n~~GQLG~g~~-~~~~~P~~V~~--l~~~-~I~~Va~ 478 (893)
.....+|++|.+ +.+.+|.+|++...|+++||.+|-||+||.|.++|||..+. .....|.+|.. +++. .|+.|++
T Consensus 214 eq~~~iPkrV~g-L~gh~~~qisvs~~HslvLT~~g~Vys~GlN~~hqLG~~~~~~~~~~p~qI~a~r~kg~~~iIgvaA 292 (1267)
T KOG0783|consen 214 EQYNFIPKRVPG-LIGHKVIQISVSHTHSLVLTKFGSVYSWGLNGSHQLGLSNDELKKDDPIQITARRIKGFKQIIGVAA 292 (1267)
T ss_pred cccccccccccc-ccccceEEEEeecceeEEEeecceEEEeecCcccccCCcCchhhcCchhhhhhHhhcchhhhhhhhc
Confidence 999999999998 78899999999999999999999999999999999998754 34556666643 2333 6899999
Q ss_pred CCceEEEEEEeeecCCCccccCCCcEEEEeCCCCCCcCCCCCCc-eeecEEeeccCCCceeeeecCCcEEEEEecCCcEE
Q 002677 479 GVWHTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDKEA-KLVPTCVAALVEPNFCRVACGHSLTVALTTSGHVY 557 (893)
Q Consensus 479 G~~ht~alte~~~~~s~~~~~~~G~ly~wG~n~~GQLG~g~~~~-~~~P~~V~~l~~~~I~~Ia~G~~htvaLt~dG~Vy 557 (893)
|..|+++.+ +..||+||.| .||||..+... ...|..+.. ....|..|+|...-|++++++|.+|
T Consensus 293 g~~hsVawt-------------~~~VY~wGlN-~GQlGi~~n~~~Vt~Pr~l~~-~~~~v~~v~a~~~ATVc~~~~~~i~ 357 (1267)
T KOG0783|consen 293 GKSHSVAWT-------------DTDVYSWGLN-NGQLGISDNISVVTTPRRLAG-LLSPVIHVVATTRATVCLLQNNSII 357 (1267)
T ss_pred ccceeeeee-------------cceEEEeccc-CceecCCCCCceeecchhhcc-cccceEEEEecCccEEEEecCCcEE
Confidence 999999997 7899999997 59999887644 556765533 3468899999999999999999999
Q ss_pred EEcCCCCCcCCCCCCCCCcCceecccc--CCCceEEEEecCCeeEEEecCCeEEEecCCCCCCCCCCCCCCCcccEEecc
Q 002677 558 TMGSPVYGQLGNPQADGKLPNRVEGKL--SKSFVEEIACGSYHVAVLTSKTEVYTWGKGANGRLGHGDTDDRNSPSLVEA 635 (893)
Q Consensus 558 ~wG~N~~GQLG~~~~~~~~P~~v~~~l--~~~~V~~Is~G~~Ht~aLt~~G~Vy~WG~N~~GQLG~g~~~~~~~P~~V~~ 635 (893)
++-....-.+-......+.-....+.+ ....+.+..+...-.+++|+-|+||.|-.+..-. +.-..+|.++-
T Consensus 358 ~~ady~~~k~~~n~~~lks~~V~gg~l~~~~~~~~k~~a~~~kll~lte~g~Vy~w~s~ns~~-----~~c~ftp~r~~- 431 (1267)
T KOG0783|consen 358 AFADYNQVKLPFNVDFLKSLKVTGGPLSLTRFNVRKLLASENKLLVLTELGEVYEWDSKNSTR-----TSCKFTPLRIF- 431 (1267)
T ss_pred EEecccceecCcchhccceeEEecCccchhhhhhhhcchhhhheeeeccCCeEEEEecCCCce-----eeeecccceee-
Confidence 987533322221111111111111122 2233566677777789999999999997543211 11223444443
Q ss_pred cCCCcEEEEccCCCccceeeee
Q 002677 636 LKDKQVKSIACGTNFTAAICLH 657 (893)
Q Consensus 636 l~~~~V~~IacG~~hT~al~~~ 657 (893)
.|.+|+--.+..++++.+
T Consensus 432 ----~isdIa~~~N~~~~~t~d 449 (1267)
T KOG0783|consen 432 ----EISDIAWTANSLILCTRD 449 (1267)
T ss_pred ----ehhhhhhccceEEEEecC
Confidence 355676666555555543
No 7
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=99.87 E-value=1e-20 Score=221.17 Aligned_cols=268 Identities=26% Similarity=0.383 Sum_probs=193.1
Q ss_pred CCCCcEEEEcCCCCCCccCCCCCCCCccccccccCCCceEecccCCCCEEEEEecCCeEEEE--EcCCcEEEEeCCCCCC
Q 002677 266 DALGDVFIWGEGTGDGVLGGGLNRVGSCFGVKMDSSLPKALESAVVLDVQNIACGGRHAALV--NKQGEVFSWGEESGGR 343 (893)
Q Consensus 266 ~s~G~Vy~WG~n~~~GqLG~g~~~~~~~~~~~~~~~~P~~v~~~~~~~V~~Ia~G~~hs~~L--t~dG~Vy~wG~N~~Gq 343 (893)
+..|+||.-|.+...|..-.|.+. ....+| .+|++|+.|-...+++ ..+|-++.-|+.. .
T Consensus 495 a~sGKvYYaGn~t~~Gl~e~G~nW--------mEL~l~--------~~IVq~SVG~D~~~~~~~A~~G~I~~v~D~k--~ 556 (3738)
T KOG1428|consen 495 ARSGKVYYAGNGTRFGLFETGNNW--------MELCLP--------EPIVQISVGIDTIMFRSGAGHGWIASVDDKK--R 556 (3738)
T ss_pred hcCccEEEecCccEEeEEccCCce--------EEecCC--------CceEEEEeccchhheeeccCcceEEeccCcc--c
Confidence 578999999998744554444421 222222 3799999997655554 4556666665322 1
Q ss_pred cCCCCCCCccccEEecccCCCcEEEEEeCCceEEEEEcCCCEEEcCCCCCCCCccCCCCCcceeeeeeecCCCCCceEEE
Q 002677 344 LGHGVDSDVLHPKLIDALSNMNIELVACGEYHTCAVTLSGDLYTWGDGTYNFGLLGHGNEVSHWVPKRVNGPLEGIHVSS 423 (893)
Q Consensus 344 LG~g~~~~~~~P~~V~~l~~~~I~~Va~G~~hs~aLT~dG~Vy~wG~n~~~~GqLG~g~~~~~~~P~~v~~~l~~~~I~~ 423 (893)
. ..-.++......+|+.|.+...---++.++|++|..|.... ........+. .+++.-|.+
T Consensus 557 ~--------~~~Rr~~P~n~rKIv~v~~s~~VY~~vSenGkifM~G~~tm----------~~n~SSqmln-~L~~~~iss 617 (3738)
T KOG1428|consen 557 N--------GRLRRLVPSNRRKIVHVCASGHVYGYVSENGKIFMGGLHTM----------RVNVSSQMLN-GLDNVMISS 617 (3738)
T ss_pred c--------cchhhcCCCCcceeEEEeeeeEEEEEEccCCeEEeecceeE----------EecchHHHhh-ccccceeeh
Confidence 1 11112222233467776555444567889999999997622 0001112222 377888999
Q ss_pred EeeCCCeEEEEecCCeEEEeecCCCcccCCCCCcc---------------------------------------------
Q 002677 424 ISCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRKS--------------------------------------------- 458 (893)
Q Consensus 424 Ia~G~~hs~aLt~~G~Vy~wG~n~~GQLG~g~~~~--------------------------------------------- 458 (893)
++.|..|.++++.+|.||+||-|+.+|+|.-....
T Consensus 618 lAlGKsH~~av~rNG~l~T~GlNN~~QCGRVEs~sTt~s~~~s~~~e~~iCP~G~HtW~~dt~~VCa~CG~Cs~~GvaC~ 697 (3738)
T KOG1428|consen 618 LALGKSHGVAVTRNGHLFTWGLNNMNQCGRVESTSTTSSPRHSGRQEYQICPIGEHTWLTDTPSVCAQCGLCSARGVACG 697 (3738)
T ss_pred hhccccceeEEEeCCeEEEEecCCcccccccccccccCCcccccceeecccCCccceeecCCcchhhhcccccccccccc
Confidence 99999999999999999999999999999621000
Q ss_pred ------------------------------------------------------cccceeee---ccCCCeEEEEEeCCc
Q 002677 459 ------------------------------------------------------VSIPREVE---SLKGLRTVRAACGVW 481 (893)
Q Consensus 459 ------------------------------------------------------~~~P~~V~---~l~~~~I~~Va~G~~ 481 (893)
...|..|. ..-++++.+|+||..
T Consensus 698 ~~~RP~G~mC~CG~GES~C~~CG~Cr~C~e~tE~~QPG~aqHvQ~~staa~QR~~~HPs~V~~sq~~Hdvkv~sVSCG~~ 777 (3738)
T KOG1428|consen 698 RVPRPKGTMCHCGVGESTCLRCGLCRPCGEVTEPAQPGRAQHVQFSSTAAPQRSTLHPSRVILSQGPHDVKVSSVSCGNF 777 (3738)
T ss_pred cCCCCCCcccccCCCcccceeccccccccCcCCcCCCCHHHhheecccccccccccCchheeeccCCcceeEEEEeccCc
Confidence 00111111 112468999999999
Q ss_pred eEEEEEEeeecCCCccccCCCcEEEEeCCCCCCcCCCCCCceeecEEeeccCCCceeeeecCCcEEEEEecCCcEEEEcC
Q 002677 482 HTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDKEAKLVPTCVAALVEPNFCRVACGHSLTVALTTSGHVYTMGS 561 (893)
Q Consensus 482 ht~alte~~~~~s~~~~~~~G~ly~wG~n~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Ia~G~~htvaLt~dG~Vy~wG~ 561 (893)
|+++|. ++++||++|.|.+||||+|+...+..|+.|..+.+..|+||++|.+||+++..||.||++|.
T Consensus 778 HtVlL~------------sd~~VfTFG~~~HGQLG~GDt~Sk~~Pq~V~~~~~t~~vQVaAGSNHT~l~~~DGsVFTFGa 845 (3738)
T KOG1428|consen 778 HTVLLA------------SDRRVFTFGSNCHGQLGVGDTLSKNTPQQVILPSDTVIVQVAAGSNHTILRANDGSVFTFGA 845 (3738)
T ss_pred eEEEEe------------cCCcEEEecCCcccccCcCccccCCCcceEEcCCCCceEEEecCCCceEEEecCCcEEEecc
Confidence 999998 59999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcCCCCCCCC----CcCceecc
Q 002677 562 PVYGQLGNPQADG----KLPNRVEG 582 (893)
Q Consensus 562 N~~GQLG~~~~~~----~~P~~v~~ 582 (893)
-..|||+.+..+. ..|.++++
T Consensus 846 F~KGQL~RP~~e~~~WNA~Pe~v~~ 870 (3738)
T KOG1428|consen 846 FGKGQLARPAGEKAGWNAIPEKVSG 870 (3738)
T ss_pred ccCccccCccccccccccCCCcCCC
Confidence 9999999877553 35666654
No 8
>cd01248 PH_PLC Phospholipase C (PLC) pleckstrin homology (PH) domain. Phospholipase C (PLC) pleckstrin homology (PH) domain. There are several isozymes of PLC (beta, gamma, delta, epsilon. zeta). While, PLC beta, gamma and delta all have N-terminal PH domains, lipid binding specificity is not conserved between them. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.83 E-value=1.6e-20 Score=177.33 Aligned_cols=104 Identities=28% Similarity=0.532 Sum_probs=94.7
Q ss_pred HHHHHhcCCeEEEEecCCCceEEEEEEeCCCCEEEEecCC--ceeeEEcccccceeeccCchhhhcCCCC----CCCCCE
Q 002677 25 AITALKKGACLLKYGRRGKPKFCPFRLSNDESVLIWFSGK--EEKHLKLSHVSRIISGQRTPIFQRYPRP----EKEYQS 98 (893)
Q Consensus 25 ~l~~L~~G~~l~K~~~~~~p~~r~f~l~~d~~~l~W~~~~--~~~~i~l~~I~eIr~G~~t~~f~~~~~~----~~~~~~ 98 (893)
++.+|++|+.|+|+.++++++.|+|+|+++...|.|.+.+ +.+.|+|++|+|||.|+.++.|++.... ..+++|
T Consensus 2 v~~~L~~G~~~~K~~~~~~~~~~~f~ld~~~~~l~W~~~~~~~~~~l~i~~IkeIR~G~~~k~~~~~~~~~~~~~~e~~~ 81 (115)
T cd01248 2 VPEALQRGSVFIKWDDTSRERRRLFRLDEKGFFLYWKDEGKKEKKVLDISSIKEIRTGKQPKDLKLRAELNQGNSLEERC 81 (115)
T ss_pred chHHHhCCCEEEEEcCCCceeeEEEEEcCCCcEEEEeCCCCccccEEEehhhhhhhCCCCCcchHHhhhhhcCCCccccE
Confidence 5789999999999998889999999999999999998765 5778999999999999999999987433 588999
Q ss_pred EEEEECC----CceeEEeCCHHHHHHHHHHHHHH
Q 002677 99 FSLIYND----RSLDLICKDKDEAEVWFSGLKAL 128 (893)
Q Consensus 99 FSiiy~~----rtLDLva~~~~e~~~Wv~gL~~L 128 (893)
|||||+. ++|||||+|+++|+.|+.||++|
T Consensus 82 fTIiy~~~~~~k~L~lVA~s~~~a~~W~~gL~~L 115 (115)
T cd01248 82 FTIVYGTDLNLKSLDLVAPSEEEAKTWVSGLRKL 115 (115)
T ss_pred EEEEECCCCCeeEEEEEECCHHHHHHHHHHHhhC
Confidence 9999976 58999999999999999999986
No 9
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=99.81 E-value=5.9e-19 Score=206.78 Aligned_cols=299 Identities=21% Similarity=0.270 Sum_probs=206.5
Q ss_pred EEEEEecCCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCccccEEecccCCCcEEEEEeCCceEEEEE--cCCCEEEcCCC
Q 002677 314 VQNIACGGRHAALVNKQGEVFSWGEESGGRLGHGVDSDVLHPKLIDALSNMNIELVACGEYHTCAVT--LSGDLYTWGDG 391 (893)
Q Consensus 314 V~~Ia~G~~hs~~Lt~dG~Vy~wG~N~~GqLG~g~~~~~~~P~~V~~l~~~~I~~Va~G~~hs~aLT--~dG~Vy~wG~n 391 (893)
-+.+-.|...+++-+.+|+||.-|... .+|.-.... ....+... .+|++|+.|-+...++. .+|-++.-|+.
T Consensus 481 tv~L~~~RE~A~iqa~sGKvYYaGn~t--~~Gl~e~G~--nWmEL~l~--~~IVq~SVG~D~~~~~~~A~~G~I~~v~D~ 554 (3738)
T KOG1428|consen 481 TVDLHFTREMAFIQARSGKVYYAGNGT--RFGLFETGN--NWMELCLP--EPIVQISVGIDTIMFRSGAGHGWIASVDDK 554 (3738)
T ss_pred heecccchhhhhhhhcCccEEEecCcc--EEeEEccCC--ceEEecCC--CceEEEEeccchhheeeccCcceEEeccCc
Confidence 456677888999999999999999654 344333222 12222222 48999999987777765 45556666655
Q ss_pred CCCCCccCCCCCcceeeeeeecCCCCCceEEEEeeCCCeEEEEecCCeEEEeecCCCcccCCCCCcccccceeeeccCCC
Q 002677 392 TYNFGLLGHGNEVSHWVPKRVNGPLEGIHVSSISCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRKSVSIPREVESLKGL 471 (893)
Q Consensus 392 ~~~~GqLG~g~~~~~~~P~~v~~~l~~~~I~~Ia~G~~hs~aLt~~G~Vy~wG~n~~GQLG~g~~~~~~~P~~V~~l~~~ 471 (893)
.. .|.+ .+. .|.+..+|+.|.+...---.+.++|++|.+|..+.. .-..-..+..|.+.
T Consensus 555 k~-~~~~------Rr~------~P~n~rKIv~v~~s~~VY~~vSenGkifM~G~~tm~--------~n~SSqmln~L~~~ 613 (3738)
T KOG1428|consen 555 KR-NGRL------RRL------VPSNRRKIVHVCASGHVYGYVSENGKIFMGGLHTMR--------VNVSSQMLNGLDNV 613 (3738)
T ss_pred cc-ccch------hhc------CCCCcceeEEEeeeeEEEEEEccCCeEEeecceeEE--------ecchHHHhhccccc
Confidence 21 1111 011 123345788775544334567899999999954321 00122345677788
Q ss_pred eEEEEEeCCceEEEEEEeeecCCCccccCCCcEEEEeCCCCCCcCCCCCCc-------------e---------------
Q 002677 472 RTVRAACGVWHTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDKEA-------------K--------------- 523 (893)
Q Consensus 472 ~I~~Va~G~~ht~alte~~~~~s~~~~~~~G~ly~wG~n~~GQLG~g~~~~-------------~--------------- 523 (893)
-|.+++.|..|+++++ .+|.||+||-|+.+|.|.-.... .
T Consensus 614 ~isslAlGKsH~~av~------------rNG~l~T~GlNN~~QCGRVEs~sTt~s~~~s~~~e~~iCP~G~HtW~~dt~~ 681 (3738)
T KOG1428|consen 614 MISSLALGKSHGVAVT------------RNGHLFTWGLNNMNQCGRVESTSTTSSPRHSGRQEYQICPIGEHTWLTDTPS 681 (3738)
T ss_pred eeehhhccccceeEEE------------eCCeEEEEecCCcccccccccccccCCcccccceeecccCCccceeecCCcc
Confidence 8999999999999999 59999999999999988321000 0
Q ss_pred -----------------------------------------------------------------------eecEEeec-
Q 002677 524 -----------------------------------------------------------------------LVPTCVAA- 531 (893)
Q Consensus 524 -----------------------------------------------------------------------~~P~~V~~- 531 (893)
.-|..|..
T Consensus 682 VCa~CG~Cs~~GvaC~~~~RP~G~mC~CG~GES~C~~CG~Cr~C~e~tE~~QPG~aqHvQ~~staa~QR~~~HPs~V~~s 761 (3738)
T KOG1428|consen 682 VCAQCGLCSARGVACGRVPRPKGTMCHCGVGESTCLRCGLCRPCGEVTEPAQPGRAQHVQFSSTAAPQRSTLHPSRVILS 761 (3738)
T ss_pred hhhhcccccccccccccCCCCCCcccccCCCcccceeccccccccCcCCcCCCCHHHhheecccccccccccCchheeec
Confidence 01111111
Q ss_pred --cCCCceeeeecCCcEEEEEecCCcEEEEcCCCCCcCCCCCCCCC-cCceeccccCCCceEEEEecCCeeEEEecCCeE
Q 002677 532 --LVEPNFCRVACGHSLTVALTTSGHVYTMGSPVYGQLGNPQADGK-LPNRVEGKLSKSFVEEIACGSYHVAVLTSKTEV 608 (893)
Q Consensus 532 --l~~~~I~~Ia~G~~htvaLt~dG~Vy~wG~N~~GQLG~~~~~~~-~P~~v~~~l~~~~V~~Is~G~~Ht~aLt~~G~V 608 (893)
.-+.++.+|+||..|+++|.+|++||++|+|.+||||.+....+ .|+.|.. +.+..+++|++|.+|++++..||.|
T Consensus 762 q~~Hdvkv~sVSCG~~HtVlL~sd~~VfTFG~~~HGQLG~GDt~Sk~~Pq~V~~-~~~t~~vQVaAGSNHT~l~~~DGsV 840 (3738)
T KOG1428|consen 762 QGPHDVKVSSVSCGNFHTVLLASDRRVFTFGSNCHGQLGVGDTLSKNTPQQVIL-PSDTVIVQVAAGSNHTILRANDGSV 840 (3738)
T ss_pred cCCcceeEEEEeccCceEEEEecCCcEEEecCCcccccCcCccccCCCcceEEc-CCCCceEEEecCCCceEEEecCCcE
Confidence 12346889999999999999999999999999999999987654 6877764 5677899999999999999999999
Q ss_pred EEecCCCCCCCCCCCCCC---CcccEEecccC---CCcEEEEccCCCccc
Q 002677 609 YTWGKGANGRLGHGDTDD---RNSPSLVEALK---DKQVKSIACGTNFTA 652 (893)
Q Consensus 609 y~WG~N~~GQLG~g~~~~---~~~P~~V~~l~---~~~V~~IacG~~hT~ 652 (893)
|++|.=..||||..-.+. -..|.+|..+. +.....|.+.++.++
T Consensus 841 FTFGaF~KGQL~RP~~e~~~WNA~Pe~v~~~G~~f~~~A~WIGAdGDss~ 890 (3738)
T KOG1428|consen 841 FTFGAFGKGQLARPAGEKAGWNAIPEKVSGFGPGFNAFAGWIGADGDSSI 890 (3738)
T ss_pred EEeccccCccccCccccccccccCCCcCCCCCccccccceeeccCCCcce
Confidence 999999999999654322 23577776543 334555655555444
No 10
>PF12814 Mcp5_PH: Meiotic cell cortex C-terminal pleckstrin homology; InterPro: IPR024774 This pleckstrin homology domain is found in eukaryotic proteins, including Mcp5, a fungal protein that anchors dynein at the cell cortex during the horsetail phase (prophase I) of meiosis. During prophase I of fission yeast all the telomeres become bundled at the spindle pole body and subsequently the nucleus undergoes a dynamic oscillation, resulting in elongated nuclear morphology known as "horsetail" nucleus. The pleckstrin homology domain is necessary for the cortical localisation of the Mcp5 protein during meiosis [].; GO: 0005515 protein binding, 0032065 cortical protein anchoring, 0005938 cell cortex
Probab=99.74 E-value=1.3e-17 Score=159.18 Aligned_cols=107 Identities=31% Similarity=0.538 Sum_probs=93.1
Q ss_pred HHHHHHHHhcCCeEEEEecCC------CceEEEEEEeCCCCEEEEecCC---------ceeeEEcccccceeeccCchhh
Q 002677 22 TEQAITALKKGACLLKYGRRG------KPKFCPFRLSNDESVLIWFSGK---------EEKHLKLSHVSRIISGQRTPIF 86 (893)
Q Consensus 22 ~~~~l~~L~~G~~l~K~~~~~------~p~~r~f~l~~d~~~l~W~~~~---------~~~~i~l~~I~eIr~G~~t~~f 86 (893)
+++||..|+.|+.|.||.|++ +||+|+|+|++++.+|.|.+.+ +.+.|.|.+|.+|..|..++.|
T Consensus 2 v~~ai~~~~~G~~l~Ky~r~~~~~~~~~~h~R~fwv~~~~~~L~Ws~~~p~~~~~~~~~~~~i~I~~v~~V~~~~~~~~~ 81 (123)
T PF12814_consen 2 VIQAITQLMIGEWLYKYTRKGRSGISEKPHRRYFWVDPYTRTLYWSSSNPKSENPSESKAKSIRIESVTEVKDGNPSPPG 81 (123)
T ss_pred HHHHHHHhhcccEEEEEcccccCccCCCcEEEEEEEeCCCCEEEecCCCCCccccccccccceEEeeeEEecCCCCCCcc
Confidence 689999999999999999988 9999999999999999997743 2356999999999999999988
Q ss_pred hcCCCCCCCCCEEEEEECCCceeEEeCCHHHHHHHHHHHHHHHHc
Q 002677 87 QRYPRPEKEYQSFSLIYNDRSLDLICKDKDEAEVWFSGLKALISR 131 (893)
Q Consensus 87 ~~~~~~~~~~~~FSiiy~~rtLDLva~~~~e~~~Wv~gL~~Li~~ 131 (893)
.. ......||.|+..+|+|||+|++.+++++|+.||++|+.+
T Consensus 82 ~~---~~~~~~si~i~t~~R~L~l~a~s~~~~~~W~~aL~~L~~~ 123 (123)
T PF12814_consen 82 LK---KPDHNKSIIIVTPDRSLDLTAPSRERHEIWFNALRYLLQK 123 (123)
T ss_pred cc---ccccceEEEEEcCCeEEEEEeCCHHHHHHHHHHHHHHhhC
Confidence 82 1225566666668899999999999999999999999863
No 11
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=99.39 E-value=3.5e-14 Score=164.94 Aligned_cols=138 Identities=31% Similarity=0.513 Sum_probs=119.4
Q ss_pred cccHHHHHHHHhcCCeEEEEecCCCceEEEEEEeCCCCEEEEecCC---ceeeEEcccccceeeccCchhhhcCCCCCCC
Q 002677 19 ERDTEQAITALKKGACLLKYGRRGKPKFCPFRLSNDESVLIWFSGK---EEKHLKLSHVSRIISGQRTPIFQRYPRPEKE 95 (893)
Q Consensus 19 ~~~~~~~l~~L~~G~~l~K~~~~~~p~~r~f~l~~d~~~l~W~~~~---~~~~i~l~~I~eIr~G~~t~~f~~~~~~~~~ 95 (893)
....+++|..|++|+.|.|++..++.+.|+|.|+.|+.+++|.+.+ .+..+.|++|+|||.|++|+.+|+..+...+
T Consensus 7 ~~~~~~~~~~~~~gs~~~k~r~~~~~~~r~~~l~~d~~~~r~~~~~~~~~~~~~~i~~i~~vr~g~~t~~lr~~~~~~~~ 86 (746)
T KOG0169|consen 7 ISNDDECILSMQKGSDLRKVRSNSRKFNRLFKLDNDGSTVRWSRTNRDPNKAKVSISEIEEVRSGKQTENLRSLARDLPE 86 (746)
T ss_pred hcccHHHHHHHHhcchhhhhcccchhHHhhhhhhhccceEEeccccCCchhcccchhhhHHHhccccchhhHHHHHhcCc
Confidence 3456889999999999999999999999999999999999997532 3445999999999999999999998888999
Q ss_pred CCEEEEEECC--CceeEEeCCHHHHHHHHHHHHHHHHcccccccccccCCCCCCCCCCCCccccccCCCCCCCCCCCCcc
Q 002677 96 YQSFSLIYND--RSLDLICKDKDEAEVWFSGLKALISRSHHRKWRTESRSDGIPSEANSPRTYTRRSSPLNSPFGSNDSL 173 (893)
Q Consensus 96 ~~~FSiiy~~--rtLDLva~~~~e~~~Wv~gL~~Li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (893)
++||||+|++ ++|||+|.++++++.||.||++|++.....+.+ .++..|+.+.|..+|..
T Consensus 87 ~~~fsi~~~~~~e~ldl~a~s~~~a~~wV~gl~~l~s~~~~~~~~------------------~~~~~wi~~~~~~ad~~ 148 (746)
T KOG0169|consen 87 DRCFSIIFKDRYESLDLIANSKEDANIWVSGLRKLISRSKSMRQR------------------SRREHWIHSIFQEADKN 148 (746)
T ss_pred ceeEEEEeccccccccccCCCHHHHHHHhhhHHHHHhccchhhhc------------------chHHHHHHHHHHHHccc
Confidence 9999999988 599999999999999999999999988733221 44667888788777754
Q ss_pred c
Q 002677 174 Q 174 (893)
Q Consensus 174 ~ 174 (893)
.
T Consensus 149 ~ 149 (746)
T KOG0169|consen 149 K 149 (746)
T ss_pred c
Confidence 3
No 12
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=99.29 E-value=4.9e-13 Score=114.51 Aligned_cols=68 Identities=40% Similarity=0.881 Sum_probs=46.9
Q ss_pred eeeccCccccccccccCCCCccccccccccccCceEeecCCCCcccccccCCCCCCCcccccchhhhhc
Q 002677 657 HKWVSGVDQSMCSGCRLPFNNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVCDNCFNKLR 725 (893)
Q Consensus 657 ~kwv~~~d~s~Cs~C~~~F~~f~rkrhhC~~CG~v~C~~Cs~~~~~~~~~~~~~~~~~RVC~~C~~~l~ 725 (893)
+.|+++.+...|..|..+|+ +.++||||+.||.+||..|++.+..++.......+++|||+.||..|+
T Consensus 1 ~~W~~d~~~~~C~~C~~~F~-~~~rrhhCr~CG~~vC~~Cs~~~~~~~~~~~~~~~~~RvC~~C~~~~~ 68 (69)
T PF01363_consen 1 PHWVPDSEASNCMICGKKFS-LFRRRHHCRNCGRVVCSSCSSQRIPLPTPSSGSGEPVRVCDSCYSKLQ 68 (69)
T ss_dssp --SSSGGG-SB-TTT--B-B-SSS-EEE-TTT--EEECCCS-EEEEET--GGTESEEEEE-HHHHHHHH
T ss_pred CCcCCCCCCCcCcCcCCcCC-CceeeEccCCCCCEECCchhCCEEcccccccCCCCcCEECHHHHHHhc
Confidence 46999999999999999998 667889999999999999999998777333344789999999999885
No 13
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS). The interaction of RCC1 with ran probably plays an important role in the regulation of gene expression. RCC1, known as PRP20 or SRM1 in yeast, pim1 in fission yeast and BJ1 in Drosophila, is a protein that contains seven tandem repeats of a domain of about 50 to 60 amino acids. As shown in the following schematic representation, the repeats make up the major part of the length of the protein. Outside the repeat region, there is just a small N-terminal domain of about 40 to 50 residues and, in the Drosophila protein only, a C-terminal domain of about 130 residues. +----+-------+-------+-------+-------+-------+-------+-------+-------------+ |N-t.|Rpt. 1 |Rpt. 2 |Rpt. 3 |Rpt. 4 |Rpt. 5 |Rpt. 6 |Rpt. 7 | C-terminal | +----+-------+-------+-------+-------+-------+-------+-------+-------------+ The RCC1-type of repeat is also found in the X-linked retinitis pigmentosa GTPase regulator []. The RCC repeats form a beta-propeller structure.; PDB: 3MVD_L 3OF7_A 1I2M_D 1A12_B 3KCI_A 4DNV_B 4DNU_A 4D9S_B 4DNW_A.
Probab=99.11 E-value=4.1e-11 Score=96.07 Aligned_cols=50 Identities=34% Similarity=0.725 Sum_probs=47.8
Q ss_pred CCeEEEecCCCCCCCC-CCCCCCCcccEEecccCCCcEEEEccCCCcccee
Q 002677 605 KTEVYTWGKGANGRLG-HGDTDDRNSPSLVEALKDKQVKSIACGTNFTAAI 654 (893)
Q Consensus 605 ~G~Vy~WG~N~~GQLG-~g~~~~~~~P~~V~~l~~~~V~~IacG~~hT~al 654 (893)
||+||+||.|.+|||| .++......|++|+.+.+.+|++|+||.+||++|
T Consensus 1 dG~vy~wG~n~~GqLG~~~~~~~~~~P~~v~~~~~~~i~~va~G~~ht~~l 51 (51)
T PF00415_consen 1 DGRVYSWGSNDYGQLGSGGDNKNVSVPTKVPFLSGVRIVQVACGSDHTLAL 51 (51)
T ss_dssp TSEEEEEEEETTSTTSSSSSSSEEEEEEEEGGGTTSEEEEEEEESSEEEEE
T ss_pred CCcEEEEECCCCCCCCCCCCCCceeEEEEECCCCCCCEEEEEeCcceEEEC
Confidence 6999999999999999 8888899999999999999999999999999986
No 15
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=9.7e-13 Score=153.71 Aligned_cols=188 Identities=29% Similarity=0.508 Sum_probs=151.2
Q ss_pred ceEecccCCCCEEEEEecCCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCccccEEecccCCCcEEEEEeCCceEEEEEcC
Q 002677 303 PKALESAVVLDVQNIACGGRHAALVNKQGEVFSWGEESGGRLGHGVDSDVLHPKLIDALSNMNIELVACGEYHTCAVTLS 382 (893)
Q Consensus 303 P~~v~~~~~~~V~~Ia~G~~hs~~Lt~dG~Vy~wG~N~~GqLG~g~~~~~~~P~~V~~l~~~~I~~Va~G~~hs~aLT~d 382 (893)
|+.+..+....|.+++||.+|+++++..|++|+||.|.+||+|++....-..|.+++.+.+....+|++|..|++++..
T Consensus 5 ~~~~~~l~~k~~lq~~cGn~hclal~~~g~~~~wg~~~~g~~~~~~~~~~~~p~~~~sl~g~p~a~v~~g~~hs~~lS~- 83 (850)
T KOG0941|consen 5 PRLVLILNYKHILQVGCGNNHCLALSCAGELFVWGMNNNGQLGRALYFPDAKPEPVESLKGVPLAQVSAGEAHSFALSS- 83 (850)
T ss_pred hHHHHHHhhhhhhhhccccHHHHhhhccCCeeeccCCccchhhhhccCCCCCCccchhhcCCcHHHHhcCCCcchhhhh-
Confidence 4444444455799999999999999999999999999999999996554445999999999999999999999998874
Q ss_pred CCEEEcCCCCCCCCccCCCCCcceeeeeeecCCCCCceEEEEeeCCCeEEEEecCCeEEEeecCCCcccCCCCCcccccc
Q 002677 383 GDLYTWGDGTYNFGLLGHGNEVSHWVPKRVNGPLEGIHVSSISCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRKSVSIP 462 (893)
Q Consensus 383 G~Vy~wG~n~~~~GqLG~g~~~~~~~P~~v~~~l~~~~I~~Ia~G~~hs~aLt~~G~Vy~wG~n~~GQLG~g~~~~~~~P 462 (893)
|+++++.+|.++++|....||+||.-......|
T Consensus 84 -----------------------------------------------~~~~lt~e~~~fs~Ga~~~~q~~h~~~~~~~~~ 116 (850)
T KOG0941|consen 84 -----------------------------------------------HTVLLTDEGKVFSFGAGSTGQLGHSLTENEVLP 116 (850)
T ss_pred -----------------------------------------------chhhcchhccccccCCccccccccccccccccc
Confidence 899999999999999999999999877788888
Q ss_pred eeeeccCCCeEEEEEeCCceEEEEEEeeecCCCccccCCCcEEEEeCCCCCCcCCCCCCceeecEEeecc------CCCc
Q 002677 463 REVESLKGLRTVRAACGVWHTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDKEAKLVPTCVAAL------VEPN 536 (893)
Q Consensus 463 ~~V~~l~~~~I~~Va~G~~ht~alte~~~~~s~~~~~~~G~ly~wG~n~~GQLG~g~~~~~~~P~~V~~l------~~~~ 536 (893)
..+..+-+..+..|+||.+|+.++.+ .-|+.|..|.+..| +.....+..-..+ ....
T Consensus 117 ~~v~e~i~~~~t~ia~~~~ht~a~v~-----------~l~qsf~~~~~~sG------k~~i~s~s~~~~l~~~d~~~~~~ 179 (850)
T KOG0941|consen 117 LLVLELIGSRVTRIACVRGHTLAIVP-----------RLGQSFSFGKGASG------KGVIVSLSGEDLLRDHDSEKDHR 179 (850)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHhhhh-----------hhcceeecccCCCC------CceeeccchhhhcccccHHHHHH
Confidence 88887778899999999999999986 67999999998876 1111111110001 1123
Q ss_pred eeeeecCCcEEEEEecCCc
Q 002677 537 FCRVACGHSLTVALTTSGH 555 (893)
Q Consensus 537 I~~Ia~G~~htvaLt~dG~ 555 (893)
+.++..|.+.++.|...+.
T Consensus 180 ~~~~~~g~dq~~~l~~~~~ 198 (850)
T KOG0941|consen 180 CSLAFAGGDQTFSLSSKGE 198 (850)
T ss_pred HHHHhcCCCceEEEEeecc
Confidence 4567888888888776653
No 16
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=99.07 E-value=1.5e-11 Score=141.53 Aligned_cols=118 Identities=24% Similarity=0.486 Sum_probs=107.1
Q ss_pred CCCCcccHHHHHHHHhcCCeEEEEe-cCCCceEEEEEEeCCCCEEEEec--CCceeeEEcccccceeeccCchhhhcCCC
Q 002677 15 GGSIERDTEQAITALKKGACLLKYG-RRGKPKFCPFRLSNDESVLIWFS--GKEEKHLKLSHVSRIISGQRTPIFQRYPR 91 (893)
Q Consensus 15 ~~~~~~~~~~~l~~L~~G~~l~K~~-~~~~p~~r~f~l~~d~~~l~W~~--~~~~~~i~l~~I~eIr~G~~t~~f~~~~~ 91 (893)
+.|.+.+..+.+.+|..|+.|+++. ++.+|.+|++.+-.+++++.|.. .|-++.|+|.+|+|||+|+++..|+|+++
T Consensus 7 ~aps~~e~~~t~~sle~gtvmt~~~sk~~~peRr~l~~~~Etrq~~ws~~adk~egai~i~eikeirpgk~skdfdry~~ 86 (1267)
T KOG1264|consen 7 DAPSEYEKSQTKRSLELGTVMTVFSSKKSTPERRTLQVIMETRQVAWSKTADKIEGAIDIREIKEIRPGKNSKDFDRYKR 86 (1267)
T ss_pred CCcchhhHHHHHhhhccceEEEEEecCCCChhhHHHHHHHHHHHHHHHHHHHhhcceeeeeeeeeccCCccchhHHHHHH
Confidence 6788999999999999999999984 45789999999999999999965 46788999999999999999999999965
Q ss_pred C--CCCCCEEEEEECC----CceeEEeCCHHHHHHHHHHHHHHHHcc
Q 002677 92 P--EKEYQSFSLIYND----RSLDLICKDKDEAEVWFSGLKALISRS 132 (893)
Q Consensus 92 ~--~~~~~~FSiiy~~----rtLDLva~~~~e~~~Wv~gL~~Li~~~ 132 (893)
. .++++||.|.||. |+|.|+|.+++|++.|+.||++|+...
T Consensus 87 ~fr~k~s~cfvil~gt~f~lktls~vatse~e~n~w~~glkw~~~dt 133 (1267)
T KOG1264|consen 87 AFRQKESCCFVILYGTQFVLKTLSLVATSEEEANNWLSGLKWLHQDT 133 (1267)
T ss_pred HhccccceeEEEeeCcEEEeeeeehhhhhhHHHHHHhhcchhhhhhh
Confidence 4 7889999999988 799999999999999999999998654
No 17
>PTZ00303 phosphatidylinositol kinase; Provisional
Probab=99.04 E-value=8.2e-11 Score=134.56 Aligned_cols=74 Identities=20% Similarity=0.600 Sum_probs=55.1
Q ss_pred eeeeeeccCcc-ccccccccCCCCccc----cccccccccCceEeecCCCCcccccc-----cC-CCCCCCcccccchhh
Q 002677 654 ICLHKWVSGVD-QSMCSGCRLPFNNFK----RKRHNCYNCGLVFCHSCSSKKSLKAS-----MA-PNPNKPYRVCDNCFN 722 (893)
Q Consensus 654 l~~~kwv~~~d-~s~Cs~C~~~F~~f~----rkrhhC~~CG~v~C~~Cs~~~~~~~~-----~~-~~~~~~~RVC~~C~~ 722 (893)
+..+.|+++.+ .+.|+.|+++|+.+. .|+||||.||.+||+.||+++..++. .+ +....++||||.||+
T Consensus 448 LhAPvWqpDDEaSdtC~~C~kkFfSlsK~L~~RKHHCRkCGrVFC~~CSSnRs~yp~aKLpKPgsseE~ppRRVCD~CYd 527 (1374)
T PTZ00303 448 LHNPSWQKDDESSDSCPSCGRAFISLSRPLGTRAHHCRSCGIRLCVFCITKRAHYSFAKLAKPGSSDEAEERLVCDTCYK 527 (1374)
T ss_pred ccCCCCCCCcccCCcccCcCCcccccccccccccccccCCccccCccccCCcccCcccccCCCCCcccccccchhHHHHH
Confidence 45678999887 478999999997443 47899999999999999998864321 11 112236789999997
Q ss_pred hhccc
Q 002677 723 KLRKT 727 (893)
Q Consensus 723 ~l~~~ 727 (893)
++...
T Consensus 528 q~EnL 532 (1374)
T PTZ00303 528 EYETV 532 (1374)
T ss_pred HHHhH
Confidence 66443
No 18
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS). The interaction of RCC1 with ran probably plays an important role in the regulation of gene expression. RCC1, known as PRP20 or SRM1 in yeast, pim1 in fission yeast and BJ1 in Drosophila, is a protein that contains seven tandem repeats of a domain of about 50 to 60 amino acids. As shown in the following schematic representation, the repeats make up the major part of the length of the protein. Outside the repeat region, there is just a small N-terminal domain of about 40 to 50 residues and, in the Drosophila protein only, a C-terminal domain of about 130 residues. +----+-------+-------+-------+-------+-------+-------+-------+-------------+ |N-t.|Rpt. 1 |Rpt. 2 |Rpt. 3 |Rpt. 4 |Rpt. 5 |Rpt. 6 |Rpt. 7 | C-terminal | +----+-------+-------+-------+-------+-------+-------+-------+-------------+ The RCC1-type of repeat is also found in the X-linked retinitis pigmentosa GTPase regulator []. The RCC repeats form a beta-propeller structure.; PDB: 3MVD_L 3OF7_A 1I2M_D 1A12_B 3KCI_A 4DNV_B 4DNU_A 4D9S_B 4DNW_A.
Probab=99.01 E-value=4.2e-10 Score=90.18 Aligned_cols=50 Identities=42% Similarity=0.727 Sum_probs=47.7
Q ss_pred CCcEEEEeCCCCCCcC-CCCCCCccccEEecccCCCcEEEEEeCCceEEEE
Q 002677 330 QGEVFSWGEESGGRLG-HGVDSDVLHPKLIDALSNMNIELVACGEYHTCAV 379 (893)
Q Consensus 330 dG~Vy~wG~N~~GqLG-~g~~~~~~~P~~V~~l~~~~I~~Va~G~~hs~aL 379 (893)
||+||+||.|.+|||| .+.......|++|..+.+.+|++|+||.+|+++|
T Consensus 1 dG~vy~wG~n~~GqLG~~~~~~~~~~P~~v~~~~~~~i~~va~G~~ht~~l 51 (51)
T PF00415_consen 1 DGRVYSWGSNDYGQLGSGGDNKNVSVPTKVPFLSGVRIVQVACGSDHTLAL 51 (51)
T ss_dssp TSEEEEEEEETTSTTSSSSSSSEEEEEEEEGGGTTSEEEEEEEESSEEEEE
T ss_pred CCcEEEEECCCCCCCCCCCCCCceeEEEEECCCCCCCEEEEEeCcceEEEC
Confidence 6999999999999999 8888899999999999999999999999999987
No 19
>KOG1818 consensus Membrane trafficking and cell signaling protein HRS, contains VHS and FYVE domains [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.01 E-value=8.5e-11 Score=135.97 Aligned_cols=70 Identities=37% Similarity=0.872 Sum_probs=60.4
Q ss_pred eeeeeccCccccccccccCCCCccccccccccccCceEeecCCCCcccccccCCCCCCCcccccchhhhhccccCC
Q 002677 655 CLHKWVSGVDQSMCSGCRLPFNNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVCDNCFNKLRKTFDT 730 (893)
Q Consensus 655 ~~~kwv~~~d~s~Cs~C~~~F~~f~rkrhhC~~CG~v~C~~Cs~~~~~~~~~~~~~~~~~RVC~~C~~~l~~~~~~ 730 (893)
+...|+ |...|..|...|+ ++.|+||||+||+|||..|+++...+|.+|. ++++||||.||..+.+....
T Consensus 158 ~~pdW~---D~~~C~rCr~~F~-~~~rkHHCr~CG~vFC~qcss~s~~lP~~Gi--~~~VRVCd~C~E~l~~~s~~ 227 (634)
T KOG1818|consen 158 TAPDWI---DSEECLRCRVKFG-LTNRKHHCRNCGQVFCGQCSSKSLTLPKLGI--EKPVRVCDSCYELLTRASVG 227 (634)
T ss_pred CCcccc---cccccceeeeeee-eccccccccccchhhccCccccccCcccccc--cccceehhhhHHHhhhcccc
Confidence 444555 5678999999999 5556799999999999999999999999987 69999999999999876654
No 20
>KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=98.97 E-value=1.1e-10 Score=125.38 Aligned_cols=68 Identities=35% Similarity=0.868 Sum_probs=59.8
Q ss_pred eeeeeccCccccccccccC-CCCccccccccccccCceEeecCCCCcccccccCCCCCCCcccccchhhhhcc
Q 002677 655 CLHKWVSGVDQSMCSGCRL-PFNNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVCDNCFNKLRK 726 (893)
Q Consensus 655 ~~~kwv~~~d~s~Cs~C~~-~F~~f~rkrhhC~~CG~v~C~~Cs~~~~~~~~~~~~~~~~~RVC~~C~~~l~~ 726 (893)
..+.|+++.+.+.|+.|.. .|+ +..||||||+||.+||..|+.++.+++.+. .++.|||+.||..|.+
T Consensus 158 ~~~~W~PD~ea~~C~~C~~~~Ft-l~~RRHHCR~CG~ivC~~Cs~n~~~l~~~~---~k~~rvC~~CF~el~~ 226 (288)
T KOG1729|consen 158 SAAVWLPDSEATECMVCGCTEFT-LSERRHHCRNCGDIVCAPCSRNRFLLPNLS---TKPIRVCDICFEELEK 226 (288)
T ss_pred cCCcccCcccceecccCCCcccc-HHHHHHHHHhcchHhhhhhhcCcccccccC---CCCceecHHHHHHHhc
Confidence 4567999999999999999 788 777789999999999999999986666544 5999999999999986
No 21
>KOG1819 consensus FYVE finger-containing proteins [General function prediction only]
Probab=98.93 E-value=2.3e-10 Score=125.48 Aligned_cols=71 Identities=34% Similarity=0.823 Sum_probs=63.0
Q ss_pred ccceeeeeeeccCccccccccccCCCCccccccccccccCceEeecCCCCcccccccCCCCCCCccccc-----chhhh
Q 002677 650 FTAAICLHKWVSGVDQSMCSGCRLPFNNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVCD-----NCFNK 723 (893)
Q Consensus 650 hT~al~~~kwv~~~d~s~Cs~C~~~F~~f~rkrhhC~~CG~v~C~~Cs~~~~~~~~~~~~~~~~~RVC~-----~C~~~ 723 (893)
.++.|..+.|+++.+...|+.|.+||. +.|+|||||+||.+||+.||....++|..+. .+..|||. .||..
T Consensus 886 tsatlsppawipd~~a~~cmacq~pf~-afrrrhhcrncggifcg~cs~asapip~~gl--~ka~rvcrpqsnldc~~r 961 (990)
T KOG1819|consen 886 TSATLSPPAWIPDEDAEQCMACQMPFN-AFRRRHHCRNCGGIFCGKCSCASAPIPEHGL--DKAPRVCRPQSNLDCLTR 961 (990)
T ss_pred cccccCCcccCCCCcchhhhhccCcHH-HHHHhhhhcccCceeecccccCCCCCccccc--ccCceecCCcccccceee
Confidence 345567788999999999999999999 7777899999999999999999999998877 58999999 88865
No 22
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=1.3e-10 Score=136.10 Aligned_cols=143 Identities=30% Similarity=0.526 Sum_probs=124.7
Q ss_pred CceEEEEeeCCCeEEEEecCCeEEEeecCCCcccCCCCCcccccceeeeccCCCeEEEEEeCCceEEEEEEeeecCCCcc
Q 002677 418 GIHVSSISCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRKSVSIPREVESLKGLRTVRAACGVWHTAAVVEVMVGNSSSS 497 (893)
Q Consensus 418 ~~~I~~Ia~G~~hs~aLt~~G~Vy~wG~n~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Va~G~~ht~alte~~~~~s~~~ 497 (893)
-.+|.+++||.+|+++++..|++|.||.|.+||+|++....-..|..++.+.+....+|++|..|++++.- ....
T Consensus 13 ~k~~lq~~cGn~hclal~~~g~~~~wg~~~~g~~~~~~~~~~~~p~~~~sl~g~p~a~v~~g~~hs~~lS~-----~~~~ 87 (850)
T KOG0941|consen 13 YKHILQVGCGNNHCLALSCAGELFVWGMNNNGQLGRALYFPDAKPEPVESLKGVPLAQVSAGEAHSFALSS-----HTVL 87 (850)
T ss_pred hhhhhhhccccHHHHhhhccCCeeeccCCccchhhhhccCCCCCCccchhhcCCcHHHHhcCCCcchhhhh-----chhh
Confidence 34799999999999999999999999999999999995544445999999999999999999999999862 2333
Q ss_pred ccCCCcEEEEeCCCCCCcCCCCCCceeecEEeeccCCCceeeeecCCcEEEEE-ecCCcEEEEcCCCCC
Q 002677 498 NCSSGKLFTWGDGDKGRLGHGDKEAKLVPTCVAALVEPNFCRVACGHSLTVAL-TTSGHVYTMGSPVYG 565 (893)
Q Consensus 498 ~~~~G~ly~wG~n~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Ia~G~~htvaL-t~dG~Vy~wG~N~~G 565 (893)
-+..|.++++|....||+|+.-......|..+..+....+.+|+||..|+++. ..-|++|.+|.+..|
T Consensus 88 lt~e~~~fs~Ga~~~~q~~h~~~~~~~~~~~v~e~i~~~~t~ia~~~~ht~a~v~~l~qsf~~~~~~sG 156 (850)
T KOG0941|consen 88 LTDEGKVFSFGAGSTGQLGHSLTENEVLPLLVLELIGSRVTRIACVRGHTLAIVPRLGQSFSFGKGASG 156 (850)
T ss_pred cchhccccccCCcccccccccccccccccHHHHHHHhhhhHHHHHHHHHHHhhhhhhcceeecccCCCC
Confidence 44689999999999999999877888889998888889999999999998875 456899999988776
No 23
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=98.75 E-value=1.1e-08 Score=72.64 Aligned_cols=30 Identities=53% Similarity=1.032 Sum_probs=26.1
Q ss_pred eEEEEecCCeeEEEecCCeEEEecCCCCCC
Q 002677 589 VEEIACGSYHVAVLTSKTEVYTWGKGANGR 618 (893)
Q Consensus 589 V~~Is~G~~Ht~aLt~~G~Vy~WG~N~~GQ 618 (893)
|++|+||.+|+++|+++|+||+||.|.+||
T Consensus 1 V~~ia~G~~ht~al~~~g~v~~wG~n~~GQ 30 (30)
T PF13540_consen 1 VVQIACGGYHTCALTSDGEVYCWGDNNYGQ 30 (30)
T ss_dssp EEEEEEESSEEEEEE-TTEEEEEE--TTST
T ss_pred CEEEEecCCEEEEEEcCCCEEEEcCCcCCC
Confidence 689999999999999999999999999998
No 24
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=98.74 E-value=1.5e-08 Score=71.96 Aligned_cols=30 Identities=43% Similarity=0.991 Sum_probs=26.1
Q ss_pred EEEEEecCCeEEEEEcCCcEEEEeCCCCCC
Q 002677 314 VQNIACGGRHAALVNKQGEVFSWGEESGGR 343 (893)
Q Consensus 314 V~~Ia~G~~hs~~Lt~dG~Vy~wG~N~~Gq 343 (893)
|++|+||..|+++|+++|+||+||.|.+||
T Consensus 1 V~~ia~G~~ht~al~~~g~v~~wG~n~~GQ 30 (30)
T PF13540_consen 1 VVQIACGGYHTCALTSDGEVYCWGDNNYGQ 30 (30)
T ss_dssp EEEEEEESSEEEEEE-TTEEEEEE--TTST
T ss_pred CEEEEecCCEEEEEEcCCCEEEEcCCcCCC
Confidence 789999999999999999999999999987
No 25
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=98.73 E-value=4.4e-09 Score=86.47 Aligned_cols=55 Identities=49% Similarity=1.118 Sum_probs=47.1
Q ss_pred ccccccccCCCCccccccccccccCceEeecCCCCcccccccCCCCCCCcccccchhh
Q 002677 665 QSMCSGCRLPFNNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVCDNCFN 722 (893)
Q Consensus 665 ~s~Cs~C~~~F~~f~rkrhhC~~CG~v~C~~Cs~~~~~~~~~~~~~~~~~RVC~~C~~ 722 (893)
...|+.|...|+ +..++|||+.||.+||.+|+..+..++.+ ...+|+|||+.||.
T Consensus 2 ~~~C~~C~~~F~-~~~rk~~Cr~Cg~~~C~~C~~~~~~~~~~--~~~~~~rvC~~C~~ 56 (57)
T cd00065 2 ASSCMGCGKPFT-LTRRRHHCRNCGRIFCSKCSSNRIPLPSM--GGGKPVRVCDSCYE 56 (57)
T ss_pred cCcCcccCcccc-CCccccccCcCcCCcChHHcCCeeecCcc--cCCCccEeChHHhC
Confidence 467999999999 55667999999999999999999777654 34689999999996
No 26
>KOG1842 consensus FYVE finger-containing protein [General function prediction only]
Probab=98.30 E-value=6.1e-08 Score=106.55 Aligned_cols=70 Identities=30% Similarity=0.769 Sum_probs=54.0
Q ss_pred eeccCccccccccccCCCCccccccccccccCceEeecCCCCccccccc------------C--------CCCCCCcccc
Q 002677 658 KWVSGVDQSMCSGCRLPFNNFKRKRHNCYNCGLVFCHSCSSKKSLKASM------------A--------PNPNKPYRVC 717 (893)
Q Consensus 658 kwv~~~d~s~Cs~C~~~F~~f~rkrhhC~~CG~v~C~~Cs~~~~~~~~~------------~--------~~~~~~~RVC 717 (893)
.|+.+.+...|..|.++|+ ++|||||||.||+|+|.+|+..-.+--+. . +....+.|+|
T Consensus 173 pW~DDs~V~~CP~Ca~~F~-l~rRrHHCRLCG~VmC~~C~k~iSle~a~~ltsss~~dt~~e~~qq~~~lH~~~~~iRlC 251 (505)
T KOG1842|consen 173 PWLDDSSVQFCPECANSFG-LTRRRHHCRLCGRVMCRDCSKFISLEIAIGLTSSSASDTHFEPNQQKDDLHQHPQPIRLC 251 (505)
T ss_pred cccCCCcccccccccchhh-hHHHhhhhhhcchHHHHHHHHhcChHHHHHHhhccCCCCCcCcccCcccccCChhHhHHH
Confidence 4999999999999999999 89999999999999999997544311000 0 1123569999
Q ss_pred cchhhhhcccc
Q 002677 718 DNCFNKLRKTF 728 (893)
Q Consensus 718 ~~C~~~l~~~~ 728 (893)
..|-..|....
T Consensus 252 ~hCl~~L~~R~ 262 (505)
T KOG1842|consen 252 MHCLDNLFRRK 262 (505)
T ss_pred HHHHHHHHHHH
Confidence 99988876643
No 27
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=98.23 E-value=1.5e-07 Score=106.14 Aligned_cols=113 Identities=27% Similarity=0.453 Sum_probs=91.8
Q ss_pred ccHHHHHHHHhcCCeEEEEe-cCCCceEEEEEEeCCCCEEEEecC-----------CceeeEEcccccceeeccCchhhh
Q 002677 20 RDTEQAITALKKGACLLKYG-RRGKPKFCPFRLSNDESVLIWFSG-----------KEEKHLKLSHVSRIISGQRTPIFQ 87 (893)
Q Consensus 20 ~~~~~~l~~L~~G~~l~K~~-~~~~p~~r~f~l~~d~~~l~W~~~-----------~~~~~i~l~~I~eIr~G~~t~~f~ 87 (893)
.-..|-|..|..|+.|-|++ |+.+-++.+.+|+++.+-|.+-.- .-..++++.||+.|..|++++..+
T Consensus 531 LIkqqrLnrL~eGt~FRKl~~rrrqdkFWycrLspnhKvLhygd~de~p~~e~~~esl~~klpvaDIkav~tgkdcphmk 610 (713)
T KOG2999|consen 531 LIKQQRLNRLVEGTVFRKLSKRRRQDKFWYCRLSPNHKVLHYGDCDEEPQGEVTQESLQEKLPVADIKAVVTGKDCPHMK 610 (713)
T ss_pred HHHHHHHHHHHhhhHHHHhhhhhhhhhheeeeecCCcceeeecCccCCCCCCCchhhhhhhcCHHHHHHHhcCCCCcchh
Confidence 34457899999999999984 446678999999999666666221 124469999999999999999998
Q ss_pred cC----CCCCCCCCEEEEEEC--C-CceeEEeCCHHHHHHHHHHHHHHHHcc
Q 002677 88 RY----PRPEKEYQSFSLIYN--D-RSLDLICKDKDEAEVWFSGLKALISRS 132 (893)
Q Consensus 88 ~~----~~~~~~~~~FSiiy~--~-rtLDLva~~~~e~~~Wv~gL~~Li~~~ 132 (893)
.. .....-++.|||.|. + .+|++||+|+.|+.+|..||.+|+...
T Consensus 611 ek~a~kQnk~~lelafsityD~~e~~~Lnfiapdk~e~~iWtdGL~aLLG~~ 662 (713)
T KOG2999|consen 611 EKSALKQNKEVLELAFSITYDMKEGETLNFIAPDKTEYCIWTDGLNALLGSD 662 (713)
T ss_pred hcchhhhhHHHHhhhhhhhccCCCCceEeeecCCcceEEeehhhHHHHhCCh
Confidence 76 223666899999995 3 699999999999999999999999653
No 28
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.10 E-value=7.6e-07 Score=95.50 Aligned_cols=80 Identities=33% Similarity=0.774 Sum_probs=63.3
Q ss_pred EccCCCccceeee--------eeeccCccccccccccCCCC-cc---------ccccccccccCceEeecCCCCcccccc
Q 002677 644 IACGTNFTAAICL--------HKWVSGVDQSMCSGCRLPFN-NF---------KRKRHNCYNCGLVFCHSCSSKKSLKAS 705 (893)
Q Consensus 644 IacG~~hT~al~~--------~kwv~~~d~s~Cs~C~~~F~-~f---------~rkrhhC~~CG~v~C~~Cs~~~~~~~~ 705 (893)
++||.+--+++-. +.|. +.+.|..|.++|. +| ..|.||||.||..+|..|+++....|.
T Consensus 256 ~S~~edg~i~~w~mn~~r~etpewl---~s~~cQ~c~qpffwn~~~m~~~k~~glr~h~crkcg~avc~~c~s~~~~~p~ 332 (404)
T KOG1409|consen 256 ISCGEDGGIVVWNMNVKRVETPEWL---DSDSCQKCNQPFFWNFRQMWDRKQLGLRQHHCRKCGKAVCGKCSSNRSSYPT 332 (404)
T ss_pred eeccCCCeEEEEeccceeecCcccc---ccchhhhhCchHHHHHHHHHhhhhhhhhhhhhhhhhhhcCcccccCcccccc
Confidence 6777666655532 2343 5678999999986 22 236899999999999999999999999
Q ss_pred cCCCCCCCcccccchhhhhcccc
Q 002677 706 MAPNPNKPYRVCDNCFNKLRKTF 728 (893)
Q Consensus 706 ~~~~~~~~~RVC~~C~~~l~~~~ 728 (893)
+++ +..+|+|++||..|+...
T Consensus 333 mg~--e~~vR~~~~c~~~i~~~~ 353 (404)
T KOG1409|consen 333 MGF--EFSVRVCDSCYPTIKDEE 353 (404)
T ss_pred ccc--eeEEEEecccchhhhcCC
Confidence 998 689999999999997644
No 29
>KOG1841 consensus Smad anchor for receptor activation [Defense mechanisms]
Probab=98.07 E-value=9.1e-07 Score=106.59 Aligned_cols=63 Identities=27% Similarity=0.556 Sum_probs=53.6
Q ss_pred eeeeeeccCccccccccccCCCCccccccccccccCceEeecCCCCcccccccCCCCCCCcccccch
Q 002677 654 ICLHKWVSGVDQSMCSGCRLPFNNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVCDNC 720 (893)
Q Consensus 654 l~~~kwv~~~d~s~Cs~C~~~F~~f~rkrhhC~~CG~v~C~~Cs~~~~~~~~~~~~~~~~~RVC~~C 720 (893)
=..+.|+++.+...|+.|.+.|. +..+|||||+||+|+|..|++.+..+-.+ .+..-|||..|
T Consensus 546 kkqP~wvpdse~pncm~clqkft-~ikrrhhcRacgkVlcgvccnek~~leyl---~e~~~rv~nV~ 608 (1287)
T KOG1841|consen 546 KKQPSWVPDSEAPNCMDCLQKFT-PIKRRHHCRACGKVLCGVCCNEKSALEYL---SESEGRVSNVD 608 (1287)
T ss_pred CCCCccCccccCchHHHHHhhcc-cccccccchhccceeehhhcchhhhhhhc---Ccccccccccc
Confidence 35678999999999999999999 77778999999999999999999655444 34677888877
No 30
>cd01244 PH_RasGAP_CG9209 RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. This protein consists of two C2 domains, followed by a RasGAP domain, a PH domain and a BTK domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.04 E-value=4.5e-05 Score=69.86 Aligned_cols=86 Identities=19% Similarity=0.262 Sum_probs=63.3
Q ss_pred CCeEEEEecCCC-----ceEEEEEEeCCCCEEEEecC---CceeeEEcccccceeeccCchhhhcCCCCCCCCCEEEEEE
Q 002677 32 GACLLKYGRRGK-----PKFCPFRLSNDESVLIWFSG---KEEKHLKLSHVSRIISGQRTPIFQRYPRPEKEYQSFSLIY 103 (893)
Q Consensus 32 G~~l~K~~~~~~-----p~~r~f~l~~d~~~l~W~~~---~~~~~i~l~~I~eIr~G~~t~~f~~~~~~~~~~~~FSiiy 103 (893)
|..|+|-.+.++ -|.|+|.|+. ..|.|+.. ++...|+|+.|+.|..-.+. .| ....+|.|++
T Consensus 4 ~~~~~kr~~~~~~~~~n~KkRwF~Lt~--~~L~Y~k~~~~~~~g~I~L~~i~~ve~v~~~-~~-------~~~~~fqivt 73 (98)
T cd01244 4 NLQQVDRSRLAWKKVLHFKKRYFQLTT--THLSWAKDVQCKKSALIKLAAIKGTEPLSDK-SF-------VNVDIITIVC 73 (98)
T ss_pred ccEEEEcccCCCccCcCCceeEEEECC--CEEEEECCCCCceeeeEEccceEEEEEcCCc-cc-------CCCceEEEEe
Confidence 445555543332 2788999994 46777654 35678999999887654332 12 2246999999
Q ss_pred CCCceeEEeCCHHHHHHHHHHHHH
Q 002677 104 NDRSLDLICKDKDEAEVWFSGLKA 127 (893)
Q Consensus 104 ~~rtLDLva~~~~e~~~Wv~gL~~ 127 (893)
.+|+|-|.|++++|++.|+..|+.
T Consensus 74 ~~r~~yi~a~s~~E~~~Wi~al~k 97 (98)
T cd01244 74 EDDTMQLQFEAPVEATDWLNALEK 97 (98)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhc
Confidence 999999999999999999999874
No 31
>cd01235 PH_SETbf Set binding factor Pleckstrin Homology (PH) domain. Set binding factor Pleckstrin Homology (PH) domain. Set binding factor is a myotubularin-related pseudo-phosphatase consisting of a Denn domain, a Gram domain, an inactive phosphatase domain, a SID motif and a C-terminal PH domain. Its PH domain is predicted to bind lipids based upon its ability to respond to phosphatidylinositol 3-kinase .
Probab=97.84 E-value=0.00016 Score=66.29 Aligned_cols=92 Identities=22% Similarity=0.286 Sum_probs=66.2
Q ss_pred EEEEecC-CCceEEEEEEeCCCCEEEEecC----CceeeEEcccccceeeccCchhhhcCCCCCCCCCEEEEEECCCcee
Q 002677 35 LLKYGRR-GKPKFCPFRLSNDESVLIWFSG----KEEKHLKLSHVSRIISGQRTPIFQRYPRPEKEYQSFSLIYNDRSLD 109 (893)
Q Consensus 35 l~K~~~~-~~p~~r~f~l~~d~~~l~W~~~----~~~~~i~l~~I~eIr~G~~t~~f~~~~~~~~~~~~FSiiy~~rtLD 109 (893)
|.|-+.. +.=+.|+|.|..+...|.++.+ +.+..|+|+++..|...+... ..+.......+|.|...+|++-
T Consensus 5 L~K~g~~~k~WkkRwFvL~~~~~~L~Yy~~~~~~~~~g~I~L~~~~~v~~~~~~~---~~~~~~~~~~~f~i~t~~r~~~ 81 (101)
T cd01235 5 LYKRGALLKGWKPRWFVLDPDKHQLRYYDDFEDTAEKGCIDLAEVKSVNLAQPGM---GAPKHTSRKGFFDLKTSKRTYN 81 (101)
T ss_pred EEEcCCCCCCccceEEEEECCCCEEEEecCCCCCccceEEEcceeEEEeecCCCC---CCCCCCCCceEEEEEeCCceEE
Confidence 4555433 3348889999988788888764 346789999988877543221 0111223456788878889999
Q ss_pred EEeCCHHHHHHHHHHHHHHH
Q 002677 110 LICKDKDEAEVWFSGLKALI 129 (893)
Q Consensus 110 Lva~~~~e~~~Wv~gL~~Li 129 (893)
|.|++++|++.|+.+|+.+|
T Consensus 82 ~~a~s~~e~~~Wi~ai~~~i 101 (101)
T cd01235 82 FLAENINEAQRWKEKIQQCI 101 (101)
T ss_pred EECCCHHHHHHHHHHHHhhC
Confidence 99999999999999998764
No 32
>cd01236 PH_outspread Outspread Pleckstrin homology (PH) domain. Outspread Pleckstrin homology (PH) domain. Outspread contains two PH domains and a C-terminal coiled-coil region. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=97.80 E-value=0.00013 Score=67.51 Aligned_cols=80 Identities=11% Similarity=0.174 Sum_probs=63.9
Q ss_pred EEecCCCceEEEEEEeCCCCEEEEec-----CCceeeEEcccccceeeccCchhhhcCCCCCCCCCEEEEEECCCceeEE
Q 002677 37 KYGRRGKPKFCPFRLSNDESVLIWFS-----GKEEKHLKLSHVSRIISGQRTPIFQRYPRPEKEYQSFSLIYNDRSLDLI 111 (893)
Q Consensus 37 K~~~~~~p~~r~f~l~~d~~~l~W~~-----~~~~~~i~l~~I~eIr~G~~t~~f~~~~~~~~~~~~FSiiy~~rtLDLv 111 (893)
.+++|+| ++|.|.|..+ ..|.|+. .++.+.|+|++..+|..|.... ....||.|++.+|+.-|+
T Consensus 18 ~~~~K~W-krRWFvL~~~-~~L~y~~d~~~~~~p~G~IdL~~~~~V~~~~~~~---------~~~~~f~I~tp~R~f~l~ 86 (104)
T cd01236 18 VHRSKRW-QRRWFILYDH-GLLTYALDEMPTTLPQGTIDMNQCTDVVDAEART---------GQKFSICILTPDKEHFIK 86 (104)
T ss_pred ceeeccc-cceEEEEeCC-CEEEEeeCCCCCcccceEEEccceEEEeeccccc---------CCccEEEEECCCceEEEE
Confidence 4566666 7788999865 6677743 2467789999999999887431 126799999999999999
Q ss_pred eCCHHHHHHHHHHHHH
Q 002677 112 CKDKDEAEVWFSGLKA 127 (893)
Q Consensus 112 a~~~~e~~~Wv~gL~~ 127 (893)
|++++|++.|+..|..
T Consensus 87 Aete~E~~~Wi~~l~~ 102 (104)
T cd01236 87 AETKEEISWWLNMLMV 102 (104)
T ss_pred eCCHHHHHHHHHHHHh
Confidence 9999999999999864
No 33
>KOG1843 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.73 E-value=9.1e-06 Score=88.95 Aligned_cols=69 Identities=16% Similarity=0.166 Sum_probs=59.5
Q ss_pred eeeeeccCccccccccccCCCCccccccccccccCceEeecCCCCcccccccCCCCCCCcccccchhhhh
Q 002677 655 CLHKWVSGVDQSMCSGCRLPFNNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVCDNCFNKL 724 (893)
Q Consensus 655 ~~~kwv~~~d~s~Cs~C~~~F~~f~rkrhhC~~CG~v~C~~Cs~~~~~~~~~~~~~~~~~RVC~~C~~~l 724 (893)
..+.|.+..-...|++|..+|..+..+|||||.|+..||-+|+--+.+.|.. +....++|||++|+-.|
T Consensus 150 ~ap~f~yskskglfagvSvegsaI~erR~anR~~yg~~cra~~ilsg~vp~p-~a~d~l~RVldS~~~nl 218 (473)
T KOG1843|consen 150 EAPVFLYSKSKGLFAGVSVEGSAIIERREANRKFYGIFCRAKSILSGLVPVP-FAADPLQRVLDSCAFNL 218 (473)
T ss_pred cCccccccccccceeeeecccceeeecchhhhhhcCccchhhhhhccCCCCC-cccCCHHHHHhhHhhcc
Confidence 3567899999999999999999888899999999999999999777666643 23457899999999998
No 34
>cd01238 PH_Tec Tec pleckstrin homology (PH) domain. Tec pleckstrin homology (PH) domain. Proteins in the Tec family of cytoplasmic protein tyrosine kinases that includes Bruton's tyrosine kinase (BTK), BMX, IL2-inducible T-cell kinase (Itk) and Tec. These proteins generally have an N-terminal PH domain, followed by a Tek homology (TH) domain, a SH3 domain, a SH2 domain and a kinase domain. Tec PH domains tether these proteins to membranes following the activation of PI3K and its subsequent phosphorylation of phosphoinositides. The importance of PH domain membrane anchoring is confirmed by the discovery of a mutation of a critical arginine residue in the BTK PH domain, which causes X-linked agammaglobulinemia (XLA) in humans and a related disorder is mice. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few dis
Probab=97.68 E-value=0.00028 Score=65.75 Aligned_cols=78 Identities=21% Similarity=0.360 Sum_probs=57.3
Q ss_pred eEEEEEEeCCCCEEEEecCC------ceeeEEcccccceeeccCchhhhcCCCCCCCCCEEEEEECCCceeEEeCCHHHH
Q 002677 45 KFCPFRLSNDESVLIWFSGK------EEKHLKLSHVSRIISGQRTPIFQRYPRPEKEYQSFSLIYNDRSLDLICKDKDEA 118 (893)
Q Consensus 45 ~~r~f~l~~d~~~l~W~~~~------~~~~i~l~~I~eIr~G~~t~~f~~~~~~~~~~~~FSiiy~~rtLDLva~~~~e~ 118 (893)
+.|.|.|. ...|.|+.++ ....|+|..+..|..-..... .........||.|+..+|++-|.|+|++|+
T Consensus 22 KkRwFvL~--~~~L~Yyk~~~~~~~~~kG~I~L~~~~~ve~~~~~~~---~~~~~~~~~~F~i~t~~r~~yl~A~s~~er 96 (106)
T cd01238 22 KERLFVLT--KSKLSYYEGDFEKRGSKKGSIDLSKIKCVETVKPEKN---PPIPERFKYPFQVVHDEGTLYVFAPTEELR 96 (106)
T ss_pred eeEEEEEc--CCEEEEECCCcccccCcceeEECCcceEEEEecCCcC---cccccccCccEEEEeCCCeEEEEcCCHHHH
Confidence 77999995 3578887643 456899999877665332210 001122357999999999999999999999
Q ss_pred HHHHHHHHH
Q 002677 119 EVWFSGLKA 127 (893)
Q Consensus 119 ~~Wv~gL~~ 127 (893)
+.|+..|+.
T Consensus 97 ~~WI~ai~~ 105 (106)
T cd01238 97 KRWIKALKQ 105 (106)
T ss_pred HHHHHHHHh
Confidence 999999975
No 35
>cd01265 PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain. PARIS-1 pleckstrin homology (PH) domain. PARIS-1 contains a PH domain and a TBC-type GTPase catalytic domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.50 E-value=0.00095 Score=60.90 Aligned_cols=83 Identities=19% Similarity=0.339 Sum_probs=62.3
Q ss_pred CeEEEEec----CCCceEEEEEEeCCCCEEEEecCC----ceeeEEcccccceeeccCchhhhcCCCCCCCCCEEEEEEC
Q 002677 33 ACLLKYGR----RGKPKFCPFRLSNDESVLIWFSGK----EEKHLKLSHVSRIISGQRTPIFQRYPRPEKEYQSFSLIYN 104 (893)
Q Consensus 33 ~~l~K~~~----~~~p~~r~f~l~~d~~~l~W~~~~----~~~~i~l~~I~eIr~G~~t~~f~~~~~~~~~~~~FSiiy~ 104 (893)
..|.|.+. ++| +.|.|.|..+...|.|+..+ +...|+|..+..+.. +.....+|.|+..
T Consensus 3 GyL~K~g~~~~~K~W-kkRWFvL~~~~~~L~Yyk~~~d~~p~G~I~L~~~~~~~~------------~~~~~~~F~i~t~ 69 (95)
T cd01265 3 GYLHKIEGKGPLRGR-RSRWFALDDRTCYLYYYKDSQDAKPLGRVDLSGAAFTYD------------PREEKGRFEIHSN 69 (95)
T ss_pred ccEEEecCCCCCcCc-eeEEEEEcCCCcEEEEECCCCcccccceEECCccEEEcC------------CCCCCCEEEEEcC
Confidence 35778754 345 88889998877788887654 456788877543321 1112568999999
Q ss_pred CCceeEEeCCHHHHHHHHHHHHHH
Q 002677 105 DRSLDLICKDKDEAEVWFSGLKAL 128 (893)
Q Consensus 105 ~rtLDLva~~~~e~~~Wv~gL~~L 128 (893)
+|+..|.|+|++|++.|+.+|+..
T Consensus 70 ~r~y~l~A~s~~e~~~Wi~al~~~ 93 (95)
T cd01265 70 NEVIALKASSDKQMNYWLQALQSK 93 (95)
T ss_pred CcEEEEECCCHHHHHHHHHHHHhh
Confidence 999999999999999999999764
No 36
>cd01264 PH_melted Melted pleckstrin homology (PH) domain. Melted pleckstrin homology (PH) domain. The melted protein has a C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=97.47 E-value=0.00068 Score=62.35 Aligned_cols=75 Identities=25% Similarity=0.399 Sum_probs=58.9
Q ss_pred eEEEEEEeCCCCEEEEecCC----ce-eeEEcccccceeeccCchhhhcCCCCCCCCCEEEEEECCCceeEEeCCHHHHH
Q 002677 45 KFCPFRLSNDESVLIWFSGK----EE-KHLKLSHVSRIISGQRTPIFQRYPRPEKEYQSFSLIYNDRSLDLICKDKDEAE 119 (893)
Q Consensus 45 ~~r~f~l~~d~~~l~W~~~~----~~-~~i~l~~I~eIr~G~~t~~f~~~~~~~~~~~~FSiiy~~rtLDLva~~~~e~~ 119 (893)
+.|+|.|.. ..|.|+..+ +. ..|+|+++..|+...+.. + ......||.|++.+||.-|.|+|++|++
T Consensus 20 krRwF~L~~--~~L~y~K~~~~~~~~~g~IdL~~~~sVk~~~~~~---~---~~~~~~~Fei~tp~rt~~l~A~se~e~e 91 (101)
T cd01264 20 KTRYFTLSG--AQLLFQKGKSKDDPDDCSIDLSKIRSVKAVAKKR---R---DRSLPKAFEIFTADKTYILKAKDEKNAE 91 (101)
T ss_pred eeEEEEEeC--CEEEEEeccCccCCCCceEEcccceEEeeccccc---c---ccccCcEEEEEcCCceEEEEeCCHHHHH
Confidence 778899994 468887644 23 689999999998875441 1 1122579999999999999999999999
Q ss_pred HHHHHHHH
Q 002677 120 VWFSGLKA 127 (893)
Q Consensus 120 ~Wv~gL~~ 127 (893)
.|+..|..
T Consensus 92 ~WI~~i~~ 99 (101)
T cd01264 92 EWLQCLNI 99 (101)
T ss_pred HHHHHHHh
Confidence 99999864
No 37
>cd01233 Unc104 Unc-104 pleckstrin homology (PH) domain. Unc-104 pleckstrin homology (PH) domain. Unc-104 is a kinesin-like protein containing an N-terminal kinesin catalytic domain, followed by a forkhead associated domain with a C-terminal PH domain. These proteins are responsible for the transport of membrane vesicles along microtubules. The mechanism involves the binding of the PH domain to phosphatidiylinositol (4,5) P2-containing liposomes.
Probab=97.47 E-value=0.00082 Score=61.89 Aligned_cols=93 Identities=16% Similarity=0.118 Sum_probs=62.5
Q ss_pred HhcCCeEEEEecCCCceEEEEEEeCCCCEEEEecCC----ceeeEEcccccceeeccCchhhhcCCCCCCCCCEEEEEEC
Q 002677 29 LKKGACLLKYGRRGKPKFCPFRLSNDESVLIWFSGK----EEKHLKLSHVSRIISGQRTPIFQRYPRPEKEYQSFSLIYN 104 (893)
Q Consensus 29 L~~G~~l~K~~~~~~p~~r~f~l~~d~~~l~W~~~~----~~~~i~l~~I~eIr~G~~t~~f~~~~~~~~~~~~FSiiy~ 104 (893)
|++|-...|-+..+.=+.|+|.|... .|.++... ....|+|.++.-...-...+. .....||.|+..
T Consensus 3 ~k~G~L~Kkg~~~k~WkkRwfvL~~~--~L~yyk~~~~~~~~~~I~L~~~~v~~~~~~~~~-------~~~~~~F~I~t~ 73 (100)
T cd01233 3 SKKGYLNFPEETNSGWTRRFVVVRRP--YLHIYRSDKDPVERGVINLSTARVEHSEDQAAM-------VKGPNTFAVCTK 73 (100)
T ss_pred ceeEEEEeeCCCCCCcEEEEEEEECC--EEEEEccCCCccEeeEEEecccEEEEccchhhh-------cCCCcEEEEECC
Confidence 45665555544433348899999965 67776543 355688876532211111111 112469999999
Q ss_pred CCceeEEeCCHHHHHHHHHHHHHHHH
Q 002677 105 DRSLDLICKDKDEAEVWFSGLKALIS 130 (893)
Q Consensus 105 ~rtLDLva~~~~e~~~Wv~gL~~Li~ 130 (893)
+|++-|.|+|++|++.|+..|+.++.
T Consensus 74 ~rt~~~~A~s~~e~~~Wi~ai~~~~~ 99 (100)
T cd01233 74 HRGYLFQALSDKEMIDWLYALNPLYA 99 (100)
T ss_pred CCEEEEEcCCHHHHHHHHHHhhhhhc
Confidence 99999999999999999999998875
No 38
>cd01266 PH_Gab Gab (Grb2-associated binder) pleckstrin homology (PH) domain. Gab (Grb2-associated binder) pleckstrin homology (PH) domain. The Gab subfamily includes several Gab proteins, Drosophila DOS and C. elegans SOC-1. They are scaffolding adaptor proteins, which possess N-terminal PH domains and a C-terminus with proline-rich regions and multiple phosphorylation sites. Following activation of growth factor receptors, Gab proteins are tyrosine phosphorylated and activate PI3K, which generates 3-phosphoinositide lipids. By binding to these lipids via the PH domain, Gab proteins remain in proximity to the receptor, leading to further signaling. While not all Gab proteins depend on the PH domain for recruitment, it is required for Gab activity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display str
Probab=97.44 E-value=0.00094 Score=62.41 Aligned_cols=79 Identities=20% Similarity=0.211 Sum_probs=58.1
Q ss_pred eEEEEEEeCCCC-----EEEEecC----CceeeEEcccccceeeccCchhhhcCCCCCCCCCEEEEEECCCceeEEeCCH
Q 002677 45 KFCPFRLSNDES-----VLIWFSG----KEEKHLKLSHVSRIISGQRTPIFQRYPRPEKEYQSFSLIYNDRSLDLICKDK 115 (893)
Q Consensus 45 ~~r~f~l~~d~~-----~l~W~~~----~~~~~i~l~~I~eIr~G~~t~~f~~~~~~~~~~~~FSiiy~~rtLDLva~~~ 115 (893)
+.|+|.|..+.. .|.++.. +.++.|+|.++..|..+.... .....-...|.|...+|++-|+|+++
T Consensus 20 krRwFvL~~~~l~~~~~~L~Yyk~~~~~k~~g~I~L~~~~~v~~~~~~~-----~~~~~~~~~f~i~t~~r~y~l~A~s~ 94 (108)
T cd01266 20 VRRYFVLHCGDRERNLFALEYYKTSRKFKLEFVIDLESCSQVDPGLLCT-----AGNCIFGYGFDIETIVRDLYLVAKNE 94 (108)
T ss_pred EEEEEEEeccccCCCcceEEEECCCCCCccceEEECCccEEEccccccc-----ccCcccceEEEEEeCCccEEEEECCH
Confidence 889999987642 4667653 356789999988776653221 01112235799998999999999999
Q ss_pred HHHHHHHHHHHHH
Q 002677 116 DEAEVWFSGLKAL 128 (893)
Q Consensus 116 ~e~~~Wv~gL~~L 128 (893)
+|++.|+..|+.|
T Consensus 95 ee~~~Wi~~I~~~ 107 (108)
T cd01266 95 EEMTLWVNCICKL 107 (108)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999999754
No 39
>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]. The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....
Probab=97.33 E-value=0.0027 Score=57.23 Aligned_cols=90 Identities=20% Similarity=0.284 Sum_probs=68.6
Q ss_pred eEEEEe-cCCCceEEEEEEeCCCCEEEEecCC------ceeeEEcccccceeeccCchhhhcCCCCCCCCCEEEEEECCC
Q 002677 34 CLLKYG-RRGKPKFCPFRLSNDESVLIWFSGK------EEKHLKLSHVSRIISGQRTPIFQRYPRPEKEYQSFSLIYNDR 106 (893)
Q Consensus 34 ~l~K~~-~~~~p~~r~f~l~~d~~~l~W~~~~------~~~~i~l~~I~eIr~G~~t~~f~~~~~~~~~~~~FSiiy~~r 106 (893)
.|.|.+ ..++.+.|+|.|..+ .-+.|.+.. ....|+|.++ +|+.....+.- .......||.|.+.++
T Consensus 6 ~L~~~~~~~~~wk~r~~vL~~~-~L~~~~~~~~~~~~~~~~~i~l~~~-~v~~~~~~~~~----~~~~~~~~f~i~~~~~ 79 (104)
T PF00169_consen 6 WLLKKSSSRKKWKKRYFVLRDS-YLLYYKSSKDKSDSKPKGSIPLDDC-TVRPDPSSDFL----SNKKRKNCFEITTPNG 79 (104)
T ss_dssp EEEEEESSSSSEEEEEEEEETT-EEEEESSTTTTTESSESEEEEGTTE-EEEEETSSTST----STSSSSSEEEEEETTS
T ss_pred EEEEECCCCCCeEEEEEEEECC-EEEEEecCccccceeeeEEEEecCc-eEEEcCccccc----cccCCCcEEEEEeCCC
Confidence 344554 456679999999885 344444332 3557999999 88888777531 4466789999999886
Q ss_pred -ceeEEeCCHHHHHHHHHHHHHHH
Q 002677 107 -SLDLICKDKDEAEVWFSGLKALI 129 (893)
Q Consensus 107 -tLDLva~~~~e~~~Wv~gL~~Li 129 (893)
++-|.|+|+++++.|+..|+..+
T Consensus 80 ~~~~~~~~s~~~~~~W~~~i~~~~ 103 (104)
T PF00169_consen 80 KSYLFSAESEEERKRWIQAIQKAI 103 (104)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHH
T ss_pred cEEEEEcCCHHHHHHHHHHHHHHh
Confidence 99999999999999999999876
No 40
>smart00233 PH Pleckstrin homology domain. Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.
Probab=97.30 E-value=0.0021 Score=57.07 Aligned_cols=90 Identities=26% Similarity=0.364 Sum_probs=66.4
Q ss_pred hcCCeEEEEe-cCCCceEEEEEEeCCCCEEEEecC-------CceeeEEcccccceeeccCchhhhcCCCCCCCCCEEEE
Q 002677 30 KKGACLLKYG-RRGKPKFCPFRLSNDESVLIWFSG-------KEEKHLKLSHVSRIISGQRTPIFQRYPRPEKEYQSFSL 101 (893)
Q Consensus 30 ~~G~~l~K~~-~~~~p~~r~f~l~~d~~~l~W~~~-------~~~~~i~l~~I~eIr~G~~t~~f~~~~~~~~~~~~FSi 101 (893)
+.|....+.. ..++.+.|++.|..+ .|.++.. .....|+|+++ +|..+.+... .....+|.|
T Consensus 3 ~~G~l~~~~~~~~~~~~~~~~~L~~~--~l~~~~~~~~~~~~~~~~~i~l~~~-~v~~~~~~~~-------~~~~~~f~l 72 (102)
T smart00233 3 KEGWLYKKSGGKKKSWKKRYFVLFNS--TLLYYKSEKAKKDYKPKGSIDLSGI-TVREAPDPDS-------AKKPHCFEI 72 (102)
T ss_pred eeEEEEEeCCCccCCceEEEEEEECC--EEEEEeCCCccccCCCceEEECCcC-EEEeCCCCcc-------CCCceEEEE
Confidence 3454444444 356778899999885 4555432 23567899888 7777766543 344689999
Q ss_pred EECCC-ceeEEeCCHHHHHHHHHHHHHHH
Q 002677 102 IYNDR-SLDLICKDKDEAEVWFSGLKALI 129 (893)
Q Consensus 102 iy~~r-tLDLva~~~~e~~~Wv~gL~~Li 129 (893)
..+++ ++-|.|++++|++.|+..|+.++
T Consensus 73 ~~~~~~~~~f~~~s~~~~~~W~~~i~~~~ 101 (102)
T smart00233 73 KTADRRSYLLQAESEEEREEWVDALRKAI 101 (102)
T ss_pred EecCCceEEEEcCCHHHHHHHHHHHHHhh
Confidence 99887 99999999999999999998775
No 41
>cd01251 PH_centaurin_alpha Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha is a phophatidlyinositide binding protein consisting of an N-terminal ArfGAP domain and two PH domains. In response to growth factor activation, PI3K phosphorylates phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 1 is recruited to the plasma membrane following growth factor stimulation by specific binding of its PH domain to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 2 is constitutively bound to the plasma membrane since it binds phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate with equal affinity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specifici
Probab=97.14 E-value=0.0043 Score=57.52 Aligned_cols=89 Identities=18% Similarity=0.371 Sum_probs=61.6
Q ss_pred eEEEEec---CCCceEEEEEEeCCCCEEEEecCC----ceeeEEccccc---ceeeccCchhhhcCCCCCCCCCEEEEEE
Q 002677 34 CLLKYGR---RGKPKFCPFRLSNDESVLIWFSGK----EEKHLKLSHVS---RIISGQRTPIFQRYPRPEKEYQSFSLIY 103 (893)
Q Consensus 34 ~l~K~~~---~~~p~~r~f~l~~d~~~l~W~~~~----~~~~i~l~~I~---eIr~G~~t~~f~~~~~~~~~~~~FSiiy 103 (893)
.|.|-+. ++| +.|.|.|.. ..|.|+.++ +...|+|.++. +|..+..... ......+|.|+.
T Consensus 4 ~L~K~g~~~~k~w-kkRwFvL~~--~~L~Yyk~~~d~~~~G~I~L~~~~~~~~v~~~~~~~~------~~~~~~~F~i~t 74 (103)
T cd01251 4 FMEKTGPKHTEGF-KKRWFTLDD--RRLMYFKDPLDAFAKGEVFLGSQEDGYEVREGLPPGT------QGNHWYGVTLVT 74 (103)
T ss_pred eEEecCCCCCCCc-eeEEEEEeC--CEEEEECCCCCcCcCcEEEeeccccceeEeccCCccc------cccccceEEEEe
Confidence 3566553 333 889999973 578887654 34568887654 3443321110 011124999999
Q ss_pred CCCceeEEeCCHHHHHHHHHHHHHHHHc
Q 002677 104 NDRSLDLICKDKDEAEVWFSGLKALISR 131 (893)
Q Consensus 104 ~~rtLDLva~~~~e~~~Wv~gL~~Li~~ 131 (893)
.+|+.-|.|++++|++.|+..|+..|..
T Consensus 75 ~~Rty~l~a~s~~e~~~Wi~ai~~v~~~ 102 (103)
T cd01251 75 PERKFLFACETEQDRREWIAAFQNVLSR 102 (103)
T ss_pred CCeEEEEECCCHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999988753
No 42
>KOG4424 consensus Predicted Rho/Rac guanine nucleotide exchange factor/faciogenital dysplasia protein 3 [Signal transduction mechanisms]
Probab=97.13 E-value=0.00024 Score=81.39 Aligned_cols=68 Identities=22% Similarity=0.477 Sum_probs=59.4
Q ss_pred CccccccccccCCCCccccccccccccCceEeecCCCCcccccccCCCCCCCcccccchhhhhccccCCCC
Q 002677 662 GVDQSMCSGCRLPFNNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVCDNCFNKLRKTFDTDG 732 (893)
Q Consensus 662 ~~d~s~Cs~C~~~F~~f~rkrhhC~~CG~v~C~~Cs~~~~~~~~~~~~~~~~~RVC~~C~~~l~~~~~~~~ 732 (893)
......|..|+.+|...+.+||||..||.++|..|+..+. .+.++..+.-|||-.||.....+..+.+
T Consensus 412 ~~k~~~c~~c~e~~~s~t~~R~~~k~~~~vlc~~cs~~~~---~l~~~~s~ssrv~~~~~~~~~~a~~s~~ 479 (623)
T KOG4424|consen 412 DNKVTSCDSCEETFNSITFRRHRCKAKGAVLCDKCSDFMA---KLSYDNSRSSRVCMDRYLTPSGAPGSPP 479 (623)
T ss_pred ccccccchhhcCchhhHHHhhhhhhhccceeeccccchhh---hhcccccchhhhhhhhccCCCCCCCCch
Confidence 6788899999999999999999999999999999999984 4445678999999999999887776544
No 43
>cd01219 PH_FGD FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD has a RhoGEF (DH) domain, followed by a PH domain, a FYVE domain and a C-terminal PH domain. FGD is a guanine nucleotide exchange factor that activates the Rho GTPase Cdc42. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=96.92 E-value=0.0082 Score=55.42 Aligned_cols=89 Identities=24% Similarity=0.343 Sum_probs=61.3
Q ss_pred HhcCCeEEEEecC-CCceEEEEEEeCCCCEEEEecCC---c-----eeeEEcccccceeeccCchhhhcCCCCCCCCCEE
Q 002677 29 LKKGACLLKYGRR-GKPKFCPFRLSNDESVLIWFSGK---E-----EKHLKLSHVSRIISGQRTPIFQRYPRPEKEYQSF 99 (893)
Q Consensus 29 L~~G~~l~K~~~~-~~p~~r~f~l~~d~~~l~W~~~~---~-----~~~i~l~~I~eIr~G~~t~~f~~~~~~~~~~~~F 99 (893)
+++|.. +|.+++ .+++.|+|.|=.| ..|.+.+.. . ...|+|+++. |.... ......+|
T Consensus 3 ikeG~L-~K~~~~~~~~k~RyffLFnd-~Ll~~~~~~~~~~~~y~~~~~i~l~~~~-v~~~~----------~~~~~~~F 69 (101)
T cd01219 3 LKEGSV-LKISSTTEKTEERYLFLFND-LLLYCVPRKMIGGSKFKVRARIDVSGMQ-VCEGD----------NLERPHSF 69 (101)
T ss_pred ccceEE-EEEecCCCCceeEEEEEeCC-EEEEEEcccccCCCcEEEEEEEecccEE-EEeCC----------CCCcCceE
Confidence 456654 577665 5789999999988 455454321 1 2235555532 22111 12235889
Q ss_pred EEEECCCceeEEeCCHHHHHHHHHHHHHHHH
Q 002677 100 SLIYNDRSLDLICKDKDEAEVWFSGLKALIS 130 (893)
Q Consensus 100 Siiy~~rtLDLva~~~~e~~~Wv~gL~~Li~ 130 (893)
.|...+|++.|.|+|++|.+.|+..|+..+.
T Consensus 70 ~I~~~~rsf~l~A~s~eEk~~W~~ai~~~i~ 100 (101)
T cd01219 70 LVSGKQRCLELQARTQKEKNDWVQAIFSIID 100 (101)
T ss_pred EEecCCcEEEEEcCCHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999998775
No 44
>cd01220 PH_CDEP Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. CDEP consists of a Ferm domain, a rhoGEF (DH) domain followed by two PH domains. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=96.89 E-value=0.0081 Score=55.25 Aligned_cols=88 Identities=22% Similarity=0.352 Sum_probs=61.9
Q ss_pred HhcCCeEEEEecCCCceEEEEEEeCCCCEEEEecCC--------ceeeEEcccccceeeccCchhhhcCCCCCCCCCEEE
Q 002677 29 LKKGACLLKYGRRGKPKFCPFRLSNDESVLIWFSGK--------EEKHLKLSHVSRIISGQRTPIFQRYPRPEKEYQSFS 100 (893)
Q Consensus 29 L~~G~~l~K~~~~~~p~~r~f~l~~d~~~l~W~~~~--------~~~~i~l~~I~eIr~G~~t~~f~~~~~~~~~~~~FS 100 (893)
+++|. |+|+++++ ++.|+|.|=.| .|.+.... ....|+|+++. |+...+. .....||.
T Consensus 3 ikEG~-L~K~~~k~-~~~R~~FLFnD--~LlY~~~~~~~~~~y~~~~~i~L~~~~-V~~~~~~---------~~~~~~F~ 68 (99)
T cd01220 3 IRQGC-LLKLSKKG-LQQRMFFLFSD--LLLYTSKSPTDQNSFRILGHLPLRGML-TEESEHE---------WGVPHCFT 68 (99)
T ss_pred eeEEE-EEEEeCCC-CceEEEEEccc--eEEEEEeecCCCceEEEEEEEEcCceE-EeeccCC---------cCCceeEE
Confidence 45665 56777765 78899999888 34453321 23457887764 5443321 11236999
Q ss_pred EEECCCceeEEeCCHHHHHHHHHHHHHHHH
Q 002677 101 LIYNDRSLDLICKDKDEAEVWFSGLKALIS 130 (893)
Q Consensus 101 iiy~~rtLDLva~~~~e~~~Wv~gL~~Li~ 130 (893)
|.-..+++-|.|.|++|.+.|+..|+.-|.
T Consensus 69 I~~~~ks~~l~A~s~~Ek~~Wi~~i~~aI~ 98 (99)
T cd01220 69 IFGGQCAITVAASTRAEKEKWLADLSKAIA 98 (99)
T ss_pred EEcCCeEEEEECCCHHHHHHHHHHHHHHhh
Confidence 998889999999999999999999987663
No 45
>cd01247 PH_GPBP Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. The GPBP protein is a kinase that phosphorylates an N-terminal region of the alpha 3 chain of type IV collagen , which is commonly known as the goodpasture antigen. It has has an N-terminal PH domain and a C-terminal START domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cyt
Probab=96.88 E-value=0.0088 Score=54.15 Aligned_cols=78 Identities=15% Similarity=0.218 Sum_probs=55.4
Q ss_pred eEEEEecC--CCceEEEEEEeCCCCEEEEecCCc------eeeEEcccccceeeccCchhhhcCCCCCCCCCEEEEEECC
Q 002677 34 CLLKYGRR--GKPKFCPFRLSNDESVLIWFSGKE------EKHLKLSHVSRIISGQRTPIFQRYPRPEKEYQSFSLIYND 105 (893)
Q Consensus 34 ~l~K~~~~--~~p~~r~f~l~~d~~~l~W~~~~~------~~~i~l~~I~eIr~G~~t~~f~~~~~~~~~~~~FSiiy~~ 105 (893)
.|.|.+.. +| +.|+|.|. + ..|.|+.++. ...|+|....-+. ...+...|.|+..+
T Consensus 4 ~L~K~~~~~k~W-k~RwFvL~-~-g~L~Yyk~~~~~~~~~~G~I~L~~~~i~~-------------~~~~~~~F~i~~~~ 67 (91)
T cd01247 4 VLSKWTNYINGW-QDRYFVLK-E-GNLSYYKSEAEKSHGCRGSIFLKKAIIAA-------------HEFDENRFDISVNE 67 (91)
T ss_pred EEEEeccccCCC-ceEEEEEE-C-CEEEEEecCccCcCCCcEEEECcccEEEc-------------CCCCCCEEEEEeCC
Confidence 46677553 54 78889994 3 6788876542 4568876532111 12235789998876
Q ss_pred -CceeEEeCCHHHHHHHHHHHHH
Q 002677 106 -RSLDLICKDKDEAEVWFSGLKA 127 (893)
Q Consensus 106 -rtLDLva~~~~e~~~Wv~gL~~ 127 (893)
|++.|.|.+++|++.|+.+|+.
T Consensus 68 ~r~~~L~A~s~~e~~~Wi~al~~ 90 (91)
T cd01247 68 NVVWYLRAENSQSRLLWMDSVVR 90 (91)
T ss_pred CeEEEEEeCCHHHHHHHHHHHhh
Confidence 9999999999999999999863
No 46
>cd00821 PH Pleckstrin homology (PH) domain. Pleckstrin homology (PH) domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=96.84 E-value=0.0054 Score=53.76 Aligned_cols=75 Identities=24% Similarity=0.269 Sum_probs=55.4
Q ss_pred CCceEEEEEEeCCCCEEEEecC------CceeeEEcccccceeeccCchhhhcCCCCCCCCCEEEEEECC-CceeEEeCC
Q 002677 42 GKPKFCPFRLSNDESVLIWFSG------KEEKHLKLSHVSRIISGQRTPIFQRYPRPEKEYQSFSLIYND-RSLDLICKD 114 (893)
Q Consensus 42 ~~p~~r~f~l~~d~~~l~W~~~------~~~~~i~l~~I~eIr~G~~t~~f~~~~~~~~~~~~FSiiy~~-rtLDLva~~ 114 (893)
+..+.|++.|..+. .+.+... .....|+|.+ ..|....... ....+|.|+... +.+.|.|++
T Consensus 14 ~~w~~~~~~L~~~~-l~~~~~~~~~~~~~~~~~i~l~~-~~v~~~~~~~---------~~~~~f~i~~~~~~~~~~~~~s 82 (96)
T cd00821 14 KGWKRRWFVLFNDL-LLYYKKKSSKKSYKPKGSIPLSG-AEVEESPDDS---------GRKNCFEIRTPDGRSYLLQAES 82 (96)
T ss_pred CCccEEEEEEECCE-EEEEECCCCCcCCCCcceEEcCC-CEEEECCCcC---------CCCcEEEEecCCCcEEEEEeCC
Confidence 45678888998773 3334332 2345678877 6666655443 467899999988 999999999
Q ss_pred HHHHHHHHHHHHH
Q 002677 115 KDEAEVWFSGLKA 127 (893)
Q Consensus 115 ~~e~~~Wv~gL~~ 127 (893)
++|++.|+..|+.
T Consensus 83 ~~~~~~W~~~l~~ 95 (96)
T cd00821 83 EEEREEWIEALQS 95 (96)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999999975
No 47
>cd01257 PH_IRS Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. PH domains are only found in eukaryotes, and are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes. The IRS PH domain targets IRS molecules to the plasma membrane, usually in response to insulin stimulation.
Probab=96.44 E-value=0.035 Score=51.25 Aligned_cols=74 Identities=15% Similarity=0.260 Sum_probs=56.9
Q ss_pred ceEEEEEEeCCC----CEEEEecC---------CceeeEEcccccceeeccCchhhhcCCCCCCCCCEEEEEECCCceeE
Q 002677 44 PKFCPFRLSNDE----SVLIWFSG---------KEEKHLKLSHVSRIISGQRTPIFQRYPRPEKEYQSFSLIYNDRSLDL 110 (893)
Q Consensus 44 p~~r~f~l~~d~----~~l~W~~~---------~~~~~i~l~~I~eIr~G~~t~~f~~~~~~~~~~~~FSiiy~~rtLDL 110 (893)
-+.|+|.|-.+. ..|.|+.+ ++.+.|+|+++..|..-.+ .....+|.|+..+|+.-|
T Consensus 14 ~kkRwFVLr~~~~~~p~~Leyyk~ek~~~~~~~~p~~vI~L~~c~~v~~~~d----------~k~~~~f~i~t~dr~f~l 83 (101)
T cd01257 14 MHKRFFVLRAESSGGPARLEYYENEKKFLQKGSAPKRVIPLESCFNINKRAD----------AKHRHLIALYTRDEYFAV 83 (101)
T ss_pred cEeEEEEEecCCCCCCceEEEECChhhccccCCCceEEEEccceEEEeeccc----------cccCeEEEEEeCCceEEE
Confidence 366899998662 37888654 2456899999988753111 122479999999999999
Q ss_pred EeCCHHHHHHHHHHHHH
Q 002677 111 ICKDKDEAEVWFSGLKA 127 (893)
Q Consensus 111 va~~~~e~~~Wv~gL~~ 127 (893)
+|++++|.+.|+..|.-
T Consensus 84 ~aese~E~~~Wi~~i~~ 100 (101)
T cd01257 84 AAENEAEQDSWYQALLE 100 (101)
T ss_pred EeCCHHHHHHHHHHHhh
Confidence 99999999999998864
No 48
>PF15409 PH_8: Pleckstrin homology domain
Probab=96.40 E-value=0.022 Score=51.12 Aligned_cols=79 Identities=19% Similarity=0.307 Sum_probs=55.8
Q ss_pred EEEEecC-CCc-eEEEEEEeCCCCEEEEecCCce----eeEEcccccceeeccCchhhhcCCCCCCCCCEEEEEECCCce
Q 002677 35 LLKYGRR-GKP-KFCPFRLSNDESVLIWFSGKEE----KHLKLSHVSRIISGQRTPIFQRYPRPEKEYQSFSLIYNDRSL 108 (893)
Q Consensus 35 l~K~~~~-~~p-~~r~f~l~~d~~~l~W~~~~~~----~~i~l~~I~eIr~G~~t~~f~~~~~~~~~~~~FSiiy~~rtL 108 (893)
|+|-+++ .+- +.|+|.|+.+...|.++....+ .+|+|.. . + ....+..++|.|-.+++.-
T Consensus 3 llKkrr~~lqG~~kRyFvL~~~~G~LsYy~~~~~~~~rGsi~v~~------a----~----is~~~~~~~I~idsg~~i~ 68 (89)
T PF15409_consen 3 LLKKRRKPLQGWHKRYFVLDFEKGTLSYYRNQNSGKLRGSIDVSL------A----V----ISANKKSRRIDIDSGDEIW 68 (89)
T ss_pred ceeeccccCCCceeEEEEEEcCCcEEEEEecCCCCeeEeEEEccc------e----E----EEecCCCCEEEEEcCCeEE
Confidence 4554333 222 8999999988899999764322 3344421 1 0 1112356889999899999
Q ss_pred eEEeCCHHHHHHHHHHHHH
Q 002677 109 DLICKDKDEAEVWFSGLKA 127 (893)
Q Consensus 109 DLva~~~~e~~~Wv~gL~~ 127 (893)
+|-|.++++++.|+..|+.
T Consensus 69 hLKa~s~~~f~~Wv~aL~~ 87 (89)
T PF15409_consen 69 HLKAKSQEDFQRWVSALQK 87 (89)
T ss_pred EEEcCCHHHHHHHHHHHHh
Confidence 9999999999999999985
No 49
>cd01250 PH_centaurin Centaurin Pleckstrin homology (PH) domain. Centaurin Pleckstrin homology (PH) domain. Centaurin beta and gamma consist of a PH domain, an ArfGAP domain and three ankyrin repeats. Centaurain gamma also has an N-terminal Ras homology domain. Centaurin alpha has a different domain architecture and its PH domain is in a different subfamily. Centaurin can bind to phosphatidlyinositol (3,4,5)P3. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=96.38 E-value=0.031 Score=50.08 Aligned_cols=73 Identities=15% Similarity=0.264 Sum_probs=48.4
Q ss_pred CCceEEEEEEeCCCCEEEEecCCc------eeeEEcccccceeeccCchhhhcCCCCCCCCCEEEEEECCCceeEEeCCH
Q 002677 42 GKPKFCPFRLSNDESVLIWFSGKE------EKHLKLSHVSRIISGQRTPIFQRYPRPEKEYQSFSLIYNDRSLDLICKDK 115 (893)
Q Consensus 42 ~~p~~r~f~l~~d~~~l~W~~~~~------~~~i~l~~I~eIr~G~~t~~f~~~~~~~~~~~~FSiiy~~rtLDLva~~~ 115 (893)
+.-+.|+|.|. + ..|.++.... ...|.|..+. |..-... .....||.|+..++++-|.|++.
T Consensus 14 ~~W~kr~~~L~-~-~~l~~y~~~~~~~~~~~~~i~l~~~~-v~~~~~~---------~~~~~~f~i~~~~~~~~f~a~s~ 81 (94)
T cd01250 14 KEWKKRWFVLK-N-GQLTYHHRLKDYDNAHVKEIDLRRCT-VRHNGKQ---------PDRRFCFEVISPTKTWHFQADSE 81 (94)
T ss_pred CCceEEEEEEe-C-CeEEEEcCCcccccccceEEeccceE-EecCccc---------cCCceEEEEEcCCcEEEEECCCH
Confidence 34588899998 3 4566654332 2345554321 1111100 12357999999999999999999
Q ss_pred HHHHHHHHHHH
Q 002677 116 DEAEVWFSGLK 126 (893)
Q Consensus 116 ~e~~~Wv~gL~ 126 (893)
++++.|+.+|+
T Consensus 82 ~~~~~Wi~al~ 92 (94)
T cd01250 82 EERDDWISAIQ 92 (94)
T ss_pred HHHHHHHHHHh
Confidence 99999999986
No 50
>cd01246 PH_oxysterol_bp Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=96.33 E-value=0.032 Score=49.63 Aligned_cols=78 Identities=21% Similarity=0.333 Sum_probs=53.8
Q ss_pred EEEEe-cCCCceEEEEEEeCCCCEEEEecCCc------eeeEEcccccceeeccCchhhhcCCCCCCCCCEEEEEECC-C
Q 002677 35 LLKYG-RRGKPKFCPFRLSNDESVLIWFSGKE------EKHLKLSHVSRIISGQRTPIFQRYPRPEKEYQSFSLIYND-R 106 (893)
Q Consensus 35 l~K~~-~~~~p~~r~f~l~~d~~~l~W~~~~~------~~~i~l~~I~eIr~G~~t~~f~~~~~~~~~~~~FSiiy~~-r 106 (893)
|.|.+ ..+.-+.|+|.|. + ..|.++.+.. ...|.|+... |... .....+|.|...+ +
T Consensus 5 L~k~~~~~~~W~~r~~vl~-~-~~L~~~~~~~~~~~~~~~~i~l~~~~-~~~~------------~~~~~~F~i~~~~~~ 69 (91)
T cd01246 5 LLKWTNYLKGWQKRWFVLD-N-GLLSYYKNKSSMRGKPRGTILLSGAV-ISED------------DSDDKCFTIDTGGDK 69 (91)
T ss_pred EEEecccCCCceeeEEEEE-C-CEEEEEecCccCCCCceEEEEeceEE-EEEC------------CCCCcEEEEEcCCCC
Confidence 44443 3345588899998 3 4677755432 3457776543 2221 1125799999977 9
Q ss_pred ceeEEeCCHHHHHHHHHHHHH
Q 002677 107 SLDLICKDKDEAEVWFSGLKA 127 (893)
Q Consensus 107 tLDLva~~~~e~~~Wv~gL~~ 127 (893)
++-|.|++.+|++.|+.+|+.
T Consensus 70 ~~~~~a~s~~e~~~Wi~al~~ 90 (91)
T cd01246 70 TLHLRANSEEERQRWVDALEL 90 (91)
T ss_pred EEEEECCCHHHHHHHHHHHHh
Confidence 999999999999999999874
No 51
>cd01260 PH_CNK Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. CNK is believed to regulate the activity and the subcellular localization of RAS activated RAF. CNK is composed of N-terminal SAM and PDZ domains along with a central or C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskelet
Probab=96.07 E-value=0.048 Score=49.56 Aligned_cols=72 Identities=24% Similarity=0.288 Sum_probs=51.7
Q ss_pred CceEEEEEEeCCCCEEEEecCC----ceeeEEcccccceeeccCchhhhcCCCCCCCCCEEEEEECC-CceeEEeCCHHH
Q 002677 43 KPKFCPFRLSNDESVLIWFSGK----EEKHLKLSHVSRIISGQRTPIFQRYPRPEKEYQSFSLIYND-RSLDLICKDKDE 117 (893)
Q Consensus 43 ~p~~r~f~l~~d~~~l~W~~~~----~~~~i~l~~I~eIr~G~~t~~f~~~~~~~~~~~~FSiiy~~-rtLDLva~~~~e 117 (893)
.=+.|+|.|.. ..|.++.++ ....|+|... .|..-. +.....||.|...+ |++-|.|++++|
T Consensus 19 ~WkkrwfvL~~--~~L~yyk~~~~~~~~~~I~L~~~-~v~~~~----------~~~k~~~F~I~~~~~~~~~f~a~s~~e 85 (96)
T cd01260 19 KWARRWFVLKG--TTLYWYRSKQDEKAEGLIFLSGF-TIESAK----------EVKKKYAFKVCHPVYKSFYFAAETLDD 85 (96)
T ss_pred CceeEEEEEEC--CEEEEECCCCCCccceEEEccCC-EEEEch----------hcCCceEEEECCCCCcEEEEEeCCHHH
Confidence 34888899985 467776543 3557888764 232211 11235799999977 999999999999
Q ss_pred HHHHHHHHHH
Q 002677 118 AEVWFSGLKA 127 (893)
Q Consensus 118 ~~~Wv~gL~~ 127 (893)
++.|+..|+.
T Consensus 86 ~~~Wi~ai~~ 95 (96)
T cd01260 86 LSQWVNHLIT 95 (96)
T ss_pred HHHHHHHHHh
Confidence 9999999863
No 52
>cd01256 PH_dynamin Dynamin pleckstrin homology (PH) domain. Dynamin pleckstrin homology (PH) domain. Dynamin is a GTPase that regulates endocytic vesicle formation. It has an N-terminal GTPase domain, followed by a PH domain, a GTPase effector domain and a C-terminal proline arginine rich domain. Dynamin-like proteins, which are found in metazoa, plants and yeast have the same domain architecture as dynamin, but lack the PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=96.02 E-value=0.028 Score=50.66 Aligned_cols=72 Identities=28% Similarity=0.559 Sum_probs=50.9
Q ss_pred CCCceEEEEEEeCCCCEEEEecCCc----eeeEEcccc--cceeeccCchhhhcCCCCCCCCCEEEEEE-------CC-C
Q 002677 41 RGKPKFCPFRLSNDESVLIWFSGKE----EKHLKLSHV--SRIISGQRTPIFQRYPRPEKEYQSFSLIY-------ND-R 106 (893)
Q Consensus 41 ~~~p~~r~f~l~~d~~~l~W~~~~~----~~~i~l~~I--~eIr~G~~t~~f~~~~~~~~~~~~FSiiy-------~~-r 106 (893)
+|.-|.|.|.|..+ +|.|+...+ +.-|+|+.+ ++|-.|--+ -..||.|++ ++ |
T Consensus 16 ~ggsK~~WFVLt~~--~L~wykd~eeKE~kyilpLdnLk~Rdve~gf~s-----------k~~~FeLfnpd~rnvykd~k 82 (110)
T cd01256 16 KGGSKDYWFVLTSE--SLSWYKDDEEKEKKYMLPLDGLKLRDIEGGFMS-----------RNHKFALFYPDGRNVYKDYK 82 (110)
T ss_pred cCCCcceEEEEecc--eeeeecccccccccceeeccccEEEeecccccC-----------CCcEEEEEcCcccccccchh
Confidence 45568888999877 688987542 335888765 344444211 137899886 44 7
Q ss_pred ceeEEeCCHHHHHHHHHHH
Q 002677 107 SLDLICKDKDEAEVWFSGL 125 (893)
Q Consensus 107 tLDLva~~~~e~~~Wv~gL 125 (893)
+|+|.|++.||.+.|...+
T Consensus 83 ~lel~~~~~e~vdswkasf 101 (110)
T cd01256 83 QLELGCETLEEVDSWKASF 101 (110)
T ss_pred eeeecCCCHHHHHHHHHHH
Confidence 9999999999999998754
No 53
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=95.47 E-value=0.025 Score=66.67 Aligned_cols=97 Identities=23% Similarity=0.310 Sum_probs=72.0
Q ss_pred HhcCCeEEEEec--C--CC--ceEEEEEEeCCCCEEEEecCC---ceeeEEcccccceeeccCchhhhcCCCCCCCCCEE
Q 002677 29 LKKGACLLKYGR--R--GK--PKFCPFRLSNDESVLIWFSGK---EEKHLKLSHVSRIISGQRTPIFQRYPRPEKEYQSF 99 (893)
Q Consensus 29 L~~G~~l~K~~~--~--~~--p~~r~f~l~~d~~~l~W~~~~---~~~~i~l~~I~eIr~G~~t~~f~~~~~~~~~~~~F 99 (893)
+.+|-.|+|+-+ + ++ -|.|+|+|... .|.|..++ +...|+|++|+.|..=. ...+.-..+|
T Consensus 565 v~k~glm~kr~~gr~~~~~~~FKKryf~LT~~--~Ls~~Ksp~~q~~~~Ipl~nI~avEkle--------e~sF~~knv~ 634 (800)
T KOG2059|consen 565 VLKEGLMIKRAQGRGRFGKKNFKKRYFRLTTE--ELSYAKSPGKQPIYTIPLSNIRAVEKLE--------EKSFKMKNVF 634 (800)
T ss_pred eecccceEeccccccchhhhhhhheEEEeccc--eeEEecCCccCcccceeHHHHHHHHHhh--------hhccCCCceE
Confidence 467778888822 2 22 26788888765 58896654 45579999998764211 1225567899
Q ss_pred EEEECCCceeEEeCCHHHHHHHHHHHHHHHHccccc
Q 002677 100 SLIYNDRSLDLICKDKDEAEVWFSGLKALISRSHHR 135 (893)
Q Consensus 100 Siiy~~rtLDLva~~~~e~~~Wv~gL~~Li~~~~~~ 135 (893)
.|||.+|+|-|.|++-.|++.|+..|+......++.
T Consensus 635 qVV~~drtly~Q~~n~vEandWldaL~kvs~~N~~r 670 (800)
T KOG2059|consen 635 QVVHTDRTLYVQAKNCVEANDWLDALRKVSCCNQNR 670 (800)
T ss_pred EEEecCcceeEecCCchHHHHHHHHHHHHhccCcch
Confidence 999999999999999999999999999887766654
No 54
>cd00900 PH-like Pleckstrin homology-like domain. Pleckstrin homology-like domain. This family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. The PH domain is commonly found in eukaryotic signaling proteins. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.
Probab=95.33 E-value=0.13 Score=45.20 Aligned_cols=74 Identities=20% Similarity=0.323 Sum_probs=55.4
Q ss_pred CCceEEEEEEeCCCCEEEEecCC---ce--eeEEcccccceeeccCchhhhcCCCCCCCCCEEEEEEC---CCceeEEeC
Q 002677 42 GKPKFCPFRLSNDESVLIWFSGK---EE--KHLKLSHVSRIISGQRTPIFQRYPRPEKEYQSFSLIYN---DRSLDLICK 113 (893)
Q Consensus 42 ~~p~~r~f~l~~d~~~l~W~~~~---~~--~~i~l~~I~eIr~G~~t~~f~~~~~~~~~~~~FSiiy~---~rtLDLva~ 113 (893)
+..+.|+|.|..+ .|..+..+ .. ..+++..+. |..+.... ....+|.|++. .+.+-|.|+
T Consensus 17 ~~w~~~~~~l~~~--~l~~~~~~~~~~~~~~~~~l~~~~-v~~~~~~~---------~~~~~F~i~~~~~~~~~~~~~~~ 84 (99)
T cd00900 17 KRWKRRWFFLFDD--GLLLYKSDDKKEIKPGSIPLSEIS-VEEDPDGS---------DDPNCFAIVTKDRGRRVFVFQAD 84 (99)
T ss_pred cCceeeEEEEECC--EEEEEEcCCCCcCCCCEEEccceE-EEECCCCC---------CCCceEEEECCCCCcEEEEEEcC
Confidence 4678888888855 55565533 22 368888877 77765543 24579999998 689999999
Q ss_pred CHHHHHHHHHHHHH
Q 002677 114 DKDEAEVWFSGLKA 127 (893)
Q Consensus 114 ~~~e~~~Wv~gL~~ 127 (893)
+.+|++.|+..|+.
T Consensus 85 ~~~~~~~W~~al~~ 98 (99)
T cd00900 85 SEEEAQEWVEALQQ 98 (99)
T ss_pred CHHHHHHHHHHHhc
Confidence 99999999999864
No 55
>cd01252 PH_cytohesin Cytohesin Pleckstrin homology (PH) domain. Cytohesin Pleckstrin homology (PH) domain. Cytohesin is an ARF-Guanine nucleotide Exchange Factor (GEF), which has a Sec7-type Arf-GEFdomain and a pleckstrin homology domain. It specifically binds phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4, 5)P3) via its PH domain and it acts as a PI 3-kinase effector mediating biological responses such as cell adhesion and membrane trafficking. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=95.17 E-value=0.2 Score=47.99 Aligned_cols=86 Identities=26% Similarity=0.316 Sum_probs=55.3
Q ss_pred eEEEEecC-CCceEEEEEEeCCCCEEEEecCC----ceeeEEcccccceeeccCchhhhcCCCCCCCCCEEEEEECC---
Q 002677 34 CLLKYGRR-GKPKFCPFRLSNDESVLIWFSGK----EEKHLKLSHVSRIISGQRTPIFQRYPRPEKEYQSFSLIYND--- 105 (893)
Q Consensus 34 ~l~K~~~~-~~p~~r~f~l~~d~~~l~W~~~~----~~~~i~l~~I~eIr~G~~t~~f~~~~~~~~~~~~FSiiy~~--- 105 (893)
.|.|-+.. +.-+.|+|.|.. ..|.|+... ....|+|+++. |..... .....||.|+..+
T Consensus 5 ~L~K~~~~~~~WkkRwfvL~~--~~L~yyk~~~~~~~~g~I~L~~~~-v~~~~~----------~~~~~~F~i~~~~~~~ 71 (125)
T cd01252 5 WLLKQGGRVKTWKRRWFILTD--NCLYYFEYTTDKEPRGIIPLENVS-IREVED----------PSKPFCFELFSPSDKQ 71 (125)
T ss_pred EEEEeCCCCCCeEeEEEEEEC--CEEEEEcCCCCCCceEEEECCCcE-EEEccc----------CCCCeeEEEECCcccc
Confidence 34455432 334888999974 467776642 35678888653 333211 1123566665522
Q ss_pred ------------------CceeEEeCCHHHHHHHHHHHHHHHHcc
Q 002677 106 ------------------RSLDLICKDKDEAEVWFSGLKALISRS 132 (893)
Q Consensus 106 ------------------rtLDLva~~~~e~~~Wv~gL~~Li~~~ 132 (893)
++.-|.|++.+|++.|+..|+..+...
T Consensus 72 ~i~~~~~~~~~~~~~~~~~~~~~~A~s~~e~~~Wi~al~~~~~~~ 116 (125)
T cd01252 72 QIKACKTESDGRVVEGNHSVYRISAANDEEMDEWIKSIKASISPN 116 (125)
T ss_pred ccccccccccccccccCceEEEEECCCHHHHHHHHHHHHHHHhcC
Confidence 456699999999999999999888643
No 56
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=95.11 E-value=0.084 Score=63.69 Aligned_cols=106 Identities=19% Similarity=0.391 Sum_probs=82.1
Q ss_pred HHHHHhcCCeEEEEecC---CCceEEEEEEeCCCCEEEEec-CCceeeEEcccccceeeccCchhhhcC----------C
Q 002677 25 AITALKKGACLLKYGRR---GKPKFCPFRLSNDESVLIWFS-GKEEKHLKLSHVSRIISGQRTPIFQRY----------P 90 (893)
Q Consensus 25 ~l~~L~~G~~l~K~~~~---~~p~~r~f~l~~d~~~l~W~~-~~~~~~i~l~~I~eIr~G~~t~~f~~~----------~ 90 (893)
....|+.|+.|+|+--- +.| -.+++|+..-.|.|.- .++--.++|..|++.|.|+....=.+. .
T Consensus 13 v~~~L~~G~~fikwddest~~~~--v~lrvDp~gffLYW~~q~~e~~~ldi~~i~d~r~g~~a~~pkd~klr~~~~~~~~ 90 (1189)
T KOG1265|consen 13 VTDILRDGSKFIKWDDESTTSTP--VTLRVDPNGFFLYWTYQNKEVDNLDISSIRDARTGRYAKLPKDPKLREVLELGPP 90 (1189)
T ss_pred ccHHHcCCceEEEeccccccccc--eEEEECCCceEEEEecCCCceeehhhhHHhhhhcchhccCCCCcccchheecCCc
Confidence 34679999999999333 445 6689999999999954 566668999999999999765322211 2
Q ss_pred CCCCCCCEEEEEECC-----CceeEEeCCHHHHHHHHHHHHHHHHcc
Q 002677 91 RPEKEYQSFSLIYND-----RSLDLICKDKDEAEVWFSGLKALISRS 132 (893)
Q Consensus 91 ~~~~~~~~FSiiy~~-----rtLDLva~~~~e~~~Wv~gL~~Li~~~ 132 (893)
+...++.-.+|++|. ..++|||..+++++.|..||-.|+-..
T Consensus 91 d~s~eek~lTVvsG~d~vN~~f~nfv~~~~~~ak~w~~~~~~l~~~~ 137 (1189)
T KOG1265|consen 91 DRSLEEKTLTVVSGPDLVNLTFLNFVAMQENVAKLWTAGLLKLAKSL 137 (1189)
T ss_pred ccccccceEEEEecCCcccceEEEEeeeeHHHHHHHHHHHHHHHHHH
Confidence 235667899999976 579999999999999999998776544
No 57
>cd01218 PH_phafin2 Phafin2 Pleckstrin Homology (PH) domain. Phafin2 Pleckstrin Homology (PH) domain. Phafin contains a PH domain and a FYVE domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=95.06 E-value=0.21 Score=46.42 Aligned_cols=88 Identities=24% Similarity=0.336 Sum_probs=60.5
Q ss_pred hcCCeEEEEecCCCceEEEEEEeCCCCEEEEecC----C---ceeeEEcccccceeeccCchhhhcCCCCCCCCCEEEEE
Q 002677 30 KKGACLLKYGRRGKPKFCPFRLSNDESVLIWFSG----K---EEKHLKLSHVSRIISGQRTPIFQRYPRPEKEYQSFSLI 102 (893)
Q Consensus 30 ~~G~~l~K~~~~~~p~~r~f~l~~d~~~l~W~~~----~---~~~~i~l~~I~eIr~G~~t~~f~~~~~~~~~~~~FSii 102 (893)
++|. |+|+.|+ +|+.|+|.|=.| .|.+-+- + ....++|+++. |+.-.+. ..-..+|.|.
T Consensus 6 ~eG~-L~K~~rk-~~~~R~ffLFnD--~LvY~~~~~~~~~~~~~~~i~L~~~~-v~~~~d~---------~~~~n~f~I~ 71 (104)
T cd01218 6 GEGV-LTKMCRK-KPKQRQFFLFND--ILVYGNIVISKKKYNKQHILPLEGVQ-VESIEDD---------GIERNGWIIK 71 (104)
T ss_pred ecCc-EEEeecC-CCceEEEEEecC--EEEEEEeecCCceeeEeeEEEccceE-EEecCCc---------ccccceEEEe
Confidence 4454 5788766 578899999888 4666321 1 23456776652 2111111 1224789999
Q ss_pred ECCCceeEEeCCHHHHHHHHHHHHHHHHc
Q 002677 103 YNDRSLDLICKDKDEAEVWFSGLKALISR 131 (893)
Q Consensus 103 y~~rtLDLva~~~~e~~~Wv~gL~~Li~~ 131 (893)
...|++=+.|++++|-+.|+..|+.-+..
T Consensus 72 ~~~kSf~v~A~s~~eK~eWl~~i~~ai~~ 100 (104)
T cd01218 72 TPTKSFAVYAATETEKREWMLHINKCVTD 100 (104)
T ss_pred cCCeEEEEEcCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999877654
No 58
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=94.94 E-value=1.1 Score=58.28 Aligned_cols=245 Identities=18% Similarity=0.252 Sum_probs=129.3
Q ss_pred cEEEEEeCCceEEEEEcCCCEEEcCCCCCCCCccCCCCCcceeeee--------------eecCCCCCc-----eEEEEe
Q 002677 365 NIELVACGEYHTCAVTLSGDLYTWGDGTYNFGLLGHGNEVSHWVPK--------------RVNGPLEGI-----HVSSIS 425 (893)
Q Consensus 365 ~I~~Va~G~~hs~aLT~dG~Vy~wG~n~~~~GqLG~g~~~~~~~P~--------------~v~~~l~~~-----~I~~Ia 425 (893)
....|.....+.++.+.+|+||.--... .+.........|. +|.+++.+. -++.=.
T Consensus 490 ~A~~VgLs~drLFvADseGkLYsa~l~~-----~~~~~~~l~~~p~~~~~~~~~~~G~~~~VtGF~~gd~G~lhAlikd~ 564 (1774)
T PF11725_consen 490 QAQSVGLSNDRLFVADSEGKLYSADLPA-----AQDNEPKLKLMPEPAYQLLGSALGGDHKVTGFISGDDGQLHALIKDR 564 (1774)
T ss_pred hhhheeecCCeEEEEeCCCCEEeccccc-----ccCCCcceEeccccccccccccccccceeeccccCCCCeeeEEEecc
Confidence 6777888888999999999999864432 1111222222222 222332221 234446
Q ss_pred eCCCeEEEEecCCeEEEeecCCCcccCCCCCccc-----ccceeeeccCCCeEEEEEeCCceEEEEEEeeecCCCccccC
Q 002677 426 CGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRKSV-----SIPREVESLKGLRTVRAACGVWHTAAVVEVMVGNSSSSNCS 500 (893)
Q Consensus 426 ~G~~hs~aLt~~G~Vy~wG~n~~GQLG~g~~~~~-----~~P~~V~~l~~~~I~~Va~G~~ht~alte~~~~~s~~~~~~ 500 (893)
.|..|+++|.++|.=|.=|+|-.-.|=..+..-. ..|..+-.+ |..-.++|.
T Consensus 565 ~GQ~Hs~aLde~~~~~~pGWNLSd~Lvl~N~~GL~~~~~p~~~~~ldl----------~r~G~v~L~------------- 621 (1774)
T PF11725_consen 565 QGQRHSHALDEQGSQLQPGWNLSDALVLDNTRGLPKPPAPAPHEILDL----------GRAGLVGLQ------------- 621 (1774)
T ss_pred CCceeeccccccCCccCCCCcccceeEeeccCCCCCCCCCChHHhhcc----------ccccceeec-------------
Confidence 7888999998888888888886555443332221 122222222 222233442
Q ss_pred CCcEEEEeCCCCC-----------------------------Cc---------CCCCCCceeecE---------EeeccC
Q 002677 501 SGKLFTWGDGDKG-----------------------------RL---------GHGDKEAKLVPT---------CVAALV 533 (893)
Q Consensus 501 ~G~ly~wG~n~~G-----------------------------QL---------G~g~~~~~~~P~---------~V~~l~ 533 (893)
+|+|+.|-....+ .| -+++......|. .+..+.
T Consensus 622 ~G~i~~wD~ttq~W~~~~~kd~~~L~RG~D~~AYVLk~G~vk~l~i~~~~~~~~~g~~~~~a~~~~r~~~e~G~~l~Gl~ 701 (1774)
T PF11725_consen 622 DGKIQYWDSTTQCWKDAGVKDIDQLKRGLDGNAYVLKDGKVKRLSINQEHPSIAHGDNNVFALPQRRNKVELGDALEGLE 701 (1774)
T ss_pred cceEeeecCcchhhhhccCcCHHHHhccccCCceEecCCceeeeecccCCCccccCCCcccccccccCCCCCCccccCCC
Confidence 4566655422111 11 111111111111 122233
Q ss_pred CCceeeee-cCCcEEEEEecCCcEEEEcCCCCCcCCCCCCCCCcCceeccccCCCceEEEEecCCe-eEEEecCCeEEE-
Q 002677 534 EPNFCRVA-CGHSLTVALTTSGHVYTMGSPVYGQLGNPQADGKLPNRVEGKLSKSFVEEIACGSYH-VAVLTSKTEVYT- 610 (893)
Q Consensus 534 ~~~I~~Ia-~G~~htvaLt~dG~Vy~wG~N~~GQLG~~~~~~~~P~~v~~~l~~~~V~~Is~G~~H-t~aLt~~G~Vy~- 610 (893)
+..|..++ .+.++.++|+..|++-..= ..-.|..+...--...|+.|++-..| .+++|.+|++|.
T Consensus 702 ~~~i~a~Avv~~~~fvald~qg~lt~h~------------k~g~p~~l~~~gl~G~ik~l~lD~~~nL~Alt~~G~Lf~~ 769 (1774)
T PF11725_consen 702 DRVITAFAVVNDNKFVALDDQGDLTAHQ------------KPGRPVPLSRPGLSGEIKDLALDEKQNLYALTSTGELFRL 769 (1774)
T ss_pred cCcceeEEEEcCCceEEeccCCcccccc------------CCCCCccCCCCCCCcchhheeeccccceeEecCCCceeec
Confidence 33444443 3556667777776655422 01114444333224569999998886 578999999997
Q ss_pred ----ecCCCCC-CCCCCCCCCCcccEEecccCCCcEEEEccCCCccceeee
Q 002677 611 ----WGKGANG-RLGHGDTDDRNSPSLVEALKDKQVKSIACGTNFTAAICL 656 (893)
Q Consensus 611 ----WG~N~~G-QLG~g~~~~~~~P~~V~~l~~~~V~~IacG~~hT~al~~ 656 (893)
|=.+..| ++ ...-++|....+..|..+....+|...+..
T Consensus 770 ~k~~WQ~~~~~~~~-------~~~W~~v~lP~~~~v~~l~~~~~~~l~~~~ 813 (1774)
T PF11725_consen 770 PKEAWQGNAEGDQM-------AAKWQKVALPDEQPVKSLRTNDDNHLSAQI 813 (1774)
T ss_pred CHHHhhCcccCCcc-------ccCceeccCCCCCchhhhhcCCCCceEEEe
Confidence 5333332 11 133344444466678888888888887764
No 59
>PF15413 PH_11: Pleckstrin homology domain; PDB: 3MDB_D 3FEH_A 3LJU_X 3FM8_C.
Probab=94.89 E-value=0.15 Score=47.93 Aligned_cols=92 Identities=24% Similarity=0.400 Sum_probs=47.0
Q ss_pred EEEEecC-CCc-eEEEEEEeCCCCEEEEecCC---ceeeEEcccccc-eeecc---Cchhhhc------CCCCCCCCCEE
Q 002677 35 LLKYGRR-GKP-KFCPFRLSNDESVLIWFSGK---EEKHLKLSHVSR-IISGQ---RTPIFQR------YPRPEKEYQSF 99 (893)
Q Consensus 35 l~K~~~~-~~p-~~r~f~l~~d~~~l~W~~~~---~~~~i~l~~I~e-Ir~G~---~t~~f~~------~~~~~~~~~~F 99 (893)
|.|-..+ +++ +.|+|-|.. ...|.++... ....|..+.... ++.|. ..+.+.. .........-|
T Consensus 5 l~K~~~~~~kgWk~RwFiL~k-~~~L~YyK~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (112)
T PF15413_consen 5 LYKWGNKFGKGWKKRWFILRK-DGVLSYYKIPRDKKDVRIIGEESSRVIRKGDWSISRRSSRIQGIKDKNPFGEIHLKVF 83 (112)
T ss_dssp EEE--TTS-S--EEEEEEEE--TTEEEEESS-------------TT-SB-SEEEE---GGGT-EEEES-T--SS-SSEEE
T ss_pred EEEecCCCCcCccccEEEEEe-CCEEEEeecccccccccccccchhceEeecccCcccccccccccccCCcccCcCCCCc
Confidence 4455544 433 788889988 4788887651 111222222111 11111 1111111 12234556788
Q ss_pred EEEECCCceeEEeCCHHHHHHHHHHHHH
Q 002677 100 SLIYNDRSLDLICKDKDEAEVWFSGLKA 127 (893)
Q Consensus 100 Siiy~~rtLDLva~~~~e~~~Wv~gL~~ 127 (893)
+|..+.|+|.|.|++.+|...|+..|+.
T Consensus 84 ~i~T~~kt~~l~~~t~~d~~~Wi~aL~~ 111 (112)
T PF15413_consen 84 SIFTPTKTFHLRCETREDRYDWIEALQE 111 (112)
T ss_dssp EEE-SS-EEEEEESSHHHHHHHHHHHHH
T ss_pred EEECCCcEEEEEECCHHHHHHHHHHHHh
Confidence 8888999999999999999999999874
No 60
>cd01261 PH_SOS Son of Sevenless (SOS) Pleckstrin homology (PH) domain. Son of Sevenless (SOS) Pleckstrin homology (PH) domain. SOS is a Ras guanine nucleotide exchange factor. It has a RhoGEF (DbH) domain, a PH domain, and a RasGEF domain. The SOS PH domain can bind to inositol 1,4,5-triphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=94.44 E-value=0.32 Score=45.74 Aligned_cols=92 Identities=13% Similarity=0.242 Sum_probs=59.4
Q ss_pred HHhcCCeEEEEe-cCCCceEEEEEEeCCCCEEEEecCCc-ee--------eEEcccc-----cceeeccCchhhhcCCCC
Q 002677 28 ALKKGACLLKYG-RRGKPKFCPFRLSNDESVLIWFSGKE-EK--------HLKLSHV-----SRIISGQRTPIFQRYPRP 92 (893)
Q Consensus 28 ~L~~G~~l~K~~-~~~~p~~r~f~l~~d~~~l~W~~~~~-~~--------~i~l~~I-----~eIr~G~~t~~f~~~~~~ 92 (893)
.+++|.. +|+. ++++++.|+|.|=.|. |+....+. +. .+.+.+. .+|.--..+
T Consensus 4 lI~EG~L-~ki~~~~~~~q~R~~FLFd~~--Li~CK~~~~~~~~~g~~~~~y~~k~~~~l~~~~V~d~~d~--------- 71 (112)
T cd01261 4 FIMEGTL-TRVGPSKKAKHERHVFLFDGL--MVLCKSNHGQPRLPGASSAEYRLKEKFFMRKVDINDKPDS--------- 71 (112)
T ss_pred ccccCcE-EEEecccCCcceEEEEEecCe--EEEEEeccCcccccccccceEEEEEEEeeeeeEEEEcCCC---------
Confidence 4566665 5665 3577899999997773 34432211 11 2333322 233322222
Q ss_pred CCCCCEEEEEEC-CCceeEEeCCHHHHHHHHHHHHHHHHc
Q 002677 93 EKEYQSFSLIYN-DRSLDLICKDKDEAEVWFSGLKALISR 131 (893)
Q Consensus 93 ~~~~~~FSiiy~-~rtLDLva~~~~e~~~Wv~gL~~Li~~ 131 (893)
.....+|-|+.. .+++-|.|++++|-+.|+..|..++.+
T Consensus 72 ~~~knaF~I~~~~~~s~~l~Akt~eeK~~Wm~~l~~~~~~ 111 (112)
T cd01261 72 SEYKNAFEIILKDGNSVIFSAKNAEEKNNWMAALISVQTK 111 (112)
T ss_pred cccCceEEEEcCCCCEEEEEECCHHHHHHHHHHHHHHhcC
Confidence 223578999986 589999999999999999999988754
No 61
>cd01241 PH_Akt Akt pleckstrin homology (PH) domain. Akt pleckstrin homology (PH) domain. Akt (Protein Kinase B (PKB)) is a phosphatidylinositol 3'-kinase (PI3K)-dependent Ser/Thr kinase. The PH domain recruits Akt to the plasma membrane by binding to phosphoinositides (PtdIns-3,4-P2) and is required for activation. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=94.43 E-value=0.25 Score=45.67 Aligned_cols=92 Identities=16% Similarity=0.178 Sum_probs=51.1
Q ss_pred HhcCCeEEEEecCCCceEEEEEEeCCCCEEEEecCC-c--e-eeEEcccccceeeccCchhhhcCCCCCCCCCEEEEEEC
Q 002677 29 LKKGACLLKYGRRGKPKFCPFRLSNDESVLIWFSGK-E--E-KHLKLSHVSRIISGQRTPIFQRYPRPEKEYQSFSLIYN 104 (893)
Q Consensus 29 L~~G~~l~K~~~~~~p~~r~f~l~~d~~~l~W~~~~-~--~-~~i~l~~I~eIr~G~~t~~f~~~~~~~~~~~~FSiiy~ 104 (893)
+++|-...+-...+.=+.|+|.|..| ..|.++..+ . + ..++|..+. |+.+.--. .......+|.|..-
T Consensus 2 ~k~G~L~K~g~~~~~Wk~R~f~L~~~-~~l~~yk~~~~~~~~~~i~l~~~~-v~~~~~~~------~~~~~~~~F~i~~~ 73 (102)
T cd01241 2 VKEGWLHKRGEYIKTWRPRYFLLKSD-GSFIGYKEKPEDGDPFLPPLNNFS-VAECQLMK------TERPRPNTFIIRCL 73 (102)
T ss_pred cEEEEEEeecCCCCCCeeEEEEEeCC-CeEEEEecCCCccCccccccCCeE-Eeeeeeee------ccCCCcceEEEEec
Confidence 34555444443334448899999987 445544332 1 1 145554432 22211000 01122358999842
Q ss_pred C--Cce--eEEeCCHHHHHHHHHHHHHH
Q 002677 105 D--RSL--DLICKDKDEAEVWFSGLKAL 128 (893)
Q Consensus 105 ~--rtL--DLva~~~~e~~~Wv~gL~~L 128 (893)
+ .++ -+.|++++|++.|+.+|+.+
T Consensus 74 ~~~~~~~r~f~a~s~ee~~eWi~ai~~v 101 (102)
T cd01241 74 QWTTVIERTFHVESPEEREEWIHAIQTV 101 (102)
T ss_pred cCCcccCEEEEeCCHHHHHHHHHHHHhh
Confidence 2 233 56799999999999999865
No 62
>KOG1811 consensus Predicted Zn2+-binding protein, contains FYVE domain [General function prediction only]
Probab=94.36 E-value=0.0045 Score=71.09 Aligned_cols=65 Identities=31% Similarity=0.836 Sum_probs=48.5
Q ss_pred eeeeccCc----cccccccc-cCCCCccccccccccccCceEeecCCCCcccccccCCCCCCCcccccchhhh
Q 002677 656 LHKWVSGV----DQSMCSGC-RLPFNNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVCDNCFNK 723 (893)
Q Consensus 656 ~~kwv~~~----d~s~Cs~C-~~~F~~f~rkrhhC~~CG~v~C~~Cs~~~~~~~~~~~~~~~~~RVC~~C~~~ 723 (893)
.|.|+++. .-..|+-| +.-|..|.| +|||+.||...|.+|+.++.....-+ .+.|.|+||.|+..
T Consensus 313 l~nfq~darrafs~a~~~a~~R~~~kd~~R-k~~~~g~Ga~e~aa~ea~kgiqEd~g--se~~Adg~Dq~psv 382 (1141)
T KOG1811|consen 313 LHNFQPDARRAFSEAICMACCREHFKDFNR-KHHCRGCGALECAACEAKKGIQEDCG--SENPADGCDQCPSV 382 (1141)
T ss_pred hhhcChhhhhhhhhhHHHHHHHHHHHHHHH-hhhccccchHHHhHHHHhhhhhhccc--ccCcccccccccch
Confidence 46788876 34567664 445775555 59999999999999999886554333 36899999999964
No 63
>PF08458 PH_2: Plant pleckstrin homology-like region; InterPro: IPR013666 This domain describes a pleckstrin homology (PH)-like region found in several plant proteins of unknown function.
Probab=94.24 E-value=0.44 Score=44.31 Aligned_cols=96 Identities=19% Similarity=0.314 Sum_probs=57.7
Q ss_pred CeEEEEecCCCceEEEEE--EeCCCCEEEE-ec--------CCceeeEEcccccceeeccCchhhhcCCCCCCCCCEEEE
Q 002677 33 ACLLKYGRRGKPKFCPFR--LSNDESVLIW-FS--------GKEEKHLKLSHVSRIISGQRTPIFQRYPRPEKEYQSFSL 101 (893)
Q Consensus 33 ~~l~K~~~~~~p~~r~f~--l~~d~~~l~W-~~--------~~~~~~i~l~~I~eIr~G~~t~~f~~~~~~~~~~~~FSi 101 (893)
+.|+|..|+|.-|.|.+. ++.. .+++= .. +++++.|-+ .|...-..-.-+...+...+.+.|-|
T Consensus 1 ~eLlk~tr~G~l~~k~Vsvyink~-~qVilKmKskhv~Gafskkkk~VV~----~V~~~~~awpgr~~~e~~~~~~yfgL 75 (110)
T PF08458_consen 1 GELLKRTRKGDLHWKTVSVYINKK-GQVILKMKSKHVGGAFSKKKKSVVL----DVCSEIPAWPGRELREDGEERRYFGL 75 (110)
T ss_pred CcceEecCCCceEEEEEEEEECCC-cEEEEEeecchhhhhhhcCCceEEE----EEccCcccCCCcccccCCceEEEEEE
Confidence 368899999988888754 4444 45443 11 123333322 22221000000111112234466777
Q ss_pred EECCCceeEEeCCHHHHHHHHHHHHHHHHccc
Q 002677 102 IYNDRSLDLICKDKDEAEVWFSGLKALISRSH 133 (893)
Q Consensus 102 iy~~rtLDLva~~~~e~~~Wv~gL~~Li~~~~ 133 (893)
-...+.+.|.|+|..+.+.|+.|++.||....
T Consensus 76 ~T~~G~vEfec~~~~~~k~W~~gI~~mL~~~~ 107 (110)
T PF08458_consen 76 KTAQGVVEFECDSQREYKRWVQGIQHMLSQVA 107 (110)
T ss_pred EecCcEEEEEeCChhhHHHHHHHHHHHHHHhh
Confidence 77778999999999999999999999997654
No 64
>cd01254 PH_PLD Phospholipase D (PLD) pleckstrin homology (PH) domain. Phospholipase D (PLD) pleckstrin homology (PH) domain. PLD hydrolyzes phosphatidylcholine to phosphatidic acid (PtdOH), which can bind target proteins. PLD contains a PH domain, a PX domain and four conserved PLD signature domains. The PLD PH domain is specific for bisphosphorylated inositides. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=93.33 E-value=0.78 Score=43.79 Aligned_cols=82 Identities=15% Similarity=0.202 Sum_probs=57.6
Q ss_pred ceEEEEEEeCCCCEEEEecCC----ceeeEEcccccceeeccCchhhhcC--CCCCCCCCEEEEEECCCceeEEeCCHHH
Q 002677 44 PKFCPFRLSNDESVLIWFSGK----EEKHLKLSHVSRIISGQRTPIFQRY--PRPEKEYQSFSLIYNDRSLDLICKDKDE 117 (893)
Q Consensus 44 p~~r~f~l~~d~~~l~W~~~~----~~~~i~l~~I~eIr~G~~t~~f~~~--~~~~~~~~~FSiiy~~rtLDLva~~~~e 117 (893)
-+.|.|.|.+ +.|.+..+. ....|.++.--.|..|.....-... .+.......|.|...+|+|-|.|+|+.+
T Consensus 33 w~kRWFvlr~--s~L~Y~~~~~~~~~~~vil~D~~f~v~~~~~~~~~~~~~~~~~~~~~~~~~i~t~~R~~~l~a~s~~~ 110 (121)
T cd01254 33 WQKRWFIVKE--SFLAYMDDPSSAQILDVILFDVDFKVNGGGKEDISLAVELKDITGLRHGLKITNSNRSLKLKCKSSRK 110 (121)
T ss_pred CcceeEEEeC--CEEEEEcCCCCCceeeEEEEcCCccEEeCCcccccccccccccCCCceEEEEEcCCcEEEEEeCCHHH
Confidence 3667788873 567775543 3445777777788877665322111 1123345789999999999999999999
Q ss_pred HHHHHHHHHH
Q 002677 118 AEVWFSGLKA 127 (893)
Q Consensus 118 ~~~Wv~gL~~ 127 (893)
++.|+..|+.
T Consensus 111 ~~~Wi~~i~~ 120 (121)
T cd01254 111 LKQWMASIED 120 (121)
T ss_pred HHHHHHHHHh
Confidence 9999999863
No 65
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms]
Probab=93.01 E-value=0.066 Score=68.12 Aligned_cols=50 Identities=32% Similarity=0.873 Sum_probs=38.4
Q ss_pred cccccccCCCCccccccccccccCceEeecCCCCcccccccCCCCCCCcccccchhhhhccccC
Q 002677 666 SMCSGCRLPFNNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVCDNCFNKLRKTFD 729 (893)
Q Consensus 666 s~Cs~C~~~F~~f~rkrhhC~~CG~v~C~~Cs~~~~~~~~~~~~~~~~~RVC~~C~~~l~~~~~ 729 (893)
.+|-.|...+ .++|||+.||++||..|.. ..++..|||..|+....+..-
T Consensus 6 ~~~~~~~t~~----~~~~~~~~~g~~~~~~~~~----------~~~~~i~~~~~~~~~~~~~~~ 55 (1598)
T KOG0230|consen 6 NVCYDCDTSV----NRRHHCRVCGRVFCSKCQD----------SPETSIRVCNECRGQWEQGNV 55 (1598)
T ss_pred cchhcccccc----ccCCCCcccCceeccccCC----------CCccceeehhhhhhhccccCC
Confidence 4677777433 3679999999999999992 224589999999998766544
No 66
>cd01245 PH_RasGAP_CG5898 RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. This protein has a domain architecture of SH2-SH3-SH2-PH-C2-Ras_GAP. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=92.83 E-value=0.86 Score=41.87 Aligned_cols=74 Identities=18% Similarity=0.219 Sum_probs=50.9
Q ss_pred eEEEEEEeC--CCCEEEEecCC----ceeeEEcccccceeeccCchhhhcCCCCCCCCCEEEEEECCC-ceeEEeCCHHH
Q 002677 45 KFCPFRLSN--DESVLIWFSGK----EEKHLKLSHVSRIISGQRTPIFQRYPRPEKEYQSFSLIYNDR-SLDLICKDKDE 117 (893)
Q Consensus 45 ~~r~f~l~~--d~~~l~W~~~~----~~~~i~l~~I~eIr~G~~t~~f~~~~~~~~~~~~FSiiy~~r-tLDLva~~~~e 117 (893)
+.|.|.|.. ....|.+.+.. +...|+|..+ .|++-++.. ..-..||.|+...+ +.-.+|.+.+|
T Consensus 17 K~rwF~l~~~~s~~~l~yf~~~~~~~p~gli~l~~~-~V~~v~ds~--------~~r~~cFel~~~~~~~~y~~~a~~~e 87 (98)
T cd01245 17 KTLYFALILDGSRSHESLLSSPKKTKPIGLIDLSDA-YLYPVHDSL--------FGRPNCFQIVERALPTVYYSCRSSEE 87 (98)
T ss_pred ceeEEEEecCCCCceEEEEcCCCCCCccceeecccc-EEEEccccc--------cCCCeEEEEecCCCCeEEEEeCCHHH
Confidence 677888853 33667665432 2335777777 777655531 12258999999876 77677777799
Q ss_pred HHHHHHHHHH
Q 002677 118 AEVWFSGLKA 127 (893)
Q Consensus 118 ~~~Wv~gL~~ 127 (893)
++.|+..|++
T Consensus 88 r~~Wi~~l~~ 97 (98)
T cd01245 88 RDKWIESLQA 97 (98)
T ss_pred HHHHHHHHhc
Confidence 9999999875
No 67
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=90.93 E-value=0.14 Score=48.65 Aligned_cols=52 Identities=21% Similarity=0.639 Sum_probs=40.9
Q ss_pred cccccccccCCCCccccccccccccCceEeecCCCCcccccccCCCCCCCcccccchhhhh
Q 002677 664 DQSMCSGCRLPFNNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVCDNCFNKL 724 (893)
Q Consensus 664 d~s~Cs~C~~~F~~f~rkrhhC~~CG~v~C~~Cs~~~~~~~~~~~~~~~~~RVC~~C~~~l 724 (893)
+...|..|..+|+.+....+.|..|...+|..|+.. ....+.-+|.-|+...
T Consensus 53 ~~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~---------~~~~~~WlC~vC~k~r 104 (118)
T PF02318_consen 53 GERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVY---------SKKEPIWLCKVCQKQR 104 (118)
T ss_dssp CCSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEE---------TSSSCCEEEHHHHHHH
T ss_pred CCcchhhhCCcccccCCCCCcCCcCCccccCccCCc---------CCCCCCEEChhhHHHH
Confidence 557899999999966666799999999999999966 2246788999998753
No 68
>cd01242 PH_ROK Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok is a serine/threonine kinase that binds GTP-rho. It consists of a kinase domain, a coiled coil region and a PH domain. The Rok PH domain is interrupted by a C1 domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=90.02 E-value=3.5 Score=38.45 Aligned_cols=83 Identities=16% Similarity=0.311 Sum_probs=51.9
Q ss_pred eEEEEEEeCCCCEEEEecCCce------eeEEcccccceeeccCchhhhcCCCCCCCCCEEEEEECC--CceeEEeCCHH
Q 002677 45 KFCPFRLSNDESVLIWFSGKEE------KHLKLSHVSRIISGQRTPIFQRYPRPEKEYQSFSLIYND--RSLDLICKDKD 116 (893)
Q Consensus 45 ~~r~f~l~~d~~~l~W~~~~~~------~~i~l~~I~eIr~G~~t~~f~~~~~~~~~~~~FSiiy~~--rtLDLva~~~~ 116 (893)
..|.|-+=.+.+-+.+.....+ ..|++++.-.|+.=..+++. ++...+-.+-|=|.|.. ++|-|.|++.+
T Consensus 20 W~r~yvVv~~~Kl~lYd~e~~~~~~~p~~vldl~~~fhv~~V~asDVi--~a~~kDiP~IF~I~~~~~~~~lllLA~s~~ 97 (112)
T cd01242 20 WKKQYVVVSSRKILFYNDEQDKENSTPSMILDIDKLFHVRPVTQGDVY--RADAKEIPKIFQILYANEARDLLLLAPQTD 97 (112)
T ss_pred ceEEEEEEeCCEEEEEecCccccCCCcEEEEEccceeeeecccHHHee--ecCcccCCeEEEEEeCCccceEEEEeCCch
Confidence 3444454455466677543322 23555442222222223322 24445567889999966 89999999999
Q ss_pred HHHHHHHHHHHHH
Q 002677 117 EAEVWFSGLKALI 129 (893)
Q Consensus 117 e~~~Wv~gL~~Li 129 (893)
|.+.||..|..-|
T Consensus 98 ek~kWV~~L~~~~ 110 (112)
T cd01242 98 EQNKWVSRLVKKI 110 (112)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999998655
No 69
>cd01232 PH_TRIO Trio pleckstrin homology (PH) domain. Trio pleckstrin homology (PH) domain. Trio is a multidomain signaling protein that contains two RhoGEF(DH)-PH domains in tandem. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=89.69 E-value=1.5 Score=41.45 Aligned_cols=89 Identities=13% Similarity=0.189 Sum_probs=55.8
Q ss_pred HhcCCeEEEEec---CCCceEEEEEEeCCCCEEEEecCCceeeEEcccccceee--ccCchhhhcC---------CCCCC
Q 002677 29 LKKGACLLKYGR---RGKPKFCPFRLSNDESVLIWFSGKEEKHLKLSHVSRIIS--GQRTPIFQRY---------PRPEK 94 (893)
Q Consensus 29 L~~G~~l~K~~~---~~~p~~r~f~l~~d~~~l~W~~~~~~~~i~l~~I~eIr~--G~~t~~f~~~---------~~~~~ 94 (893)
|.+|+.++=.++ +.|++.|.+.|=++. |+.... .+-.. +..+-.|+.. .....
T Consensus 6 l~Q~~f~v~~~~~~~~~K~~eR~vFLFe~~--lvfsk~-----------~~~~~~~~~~~Y~yK~~ikls~l~l~e~v~g 72 (114)
T cd01232 6 LLQDTFQVWDPKAGLIQKGRERRVFLFEQS--IIFAKE-----------VKKKKQFGNPKYIYKSKLQVSKMGLTEHVEG 72 (114)
T ss_pred EEEccEEEEeCCccccCCCceeEEEEeece--EEEEEE-----------eccCCCCCceeEEEecceeeeeeEeEEccCC
Confidence 456666555544 358899999998872 333111 10001 1122222222 11234
Q ss_pred CCCEEEEEECCC-----ceeEEeCCHHHHHHHHHHHHHHHH
Q 002677 95 EYQSFSLIYNDR-----SLDLICKDKDEAEVWFSGLKALIS 130 (893)
Q Consensus 95 ~~~~FSiiy~~r-----tLDLva~~~~e~~~Wv~gL~~Li~ 130 (893)
+.+.|.|.++++ +.-|-|.|.++-+.|+.-|+.++.
T Consensus 73 d~~kF~i~~~~~~~~~~~~ilqA~s~e~K~~W~~~I~~il~ 113 (114)
T cd01232 73 DPCRFALWSGDPPISDNRIILKANSQETKQEWVKKIREILQ 113 (114)
T ss_pred CCceEEEEeCCCCCCceEEEEECCCHHHHHHHHHHHHHHhh
Confidence 679999999763 566999999999999999999885
No 70
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=89.26 E-value=0.059 Score=66.14 Aligned_cols=132 Identities=18% Similarity=0.279 Sum_probs=89.5
Q ss_pred CCCEEEEEecCCeEEEEEcCCcEEEEeCCCCCCcCCC--CCCCccccEEe-cccCCCcEEEEEeCCceEEEEEcCCCEEE
Q 002677 311 VLDVQNIACGGRHAALVNKQGEVFSWGEESGGRLGHG--VDSDVLHPKLI-DALSNMNIELVACGEYHTCAVTLSGDLYT 387 (893)
Q Consensus 311 ~~~V~~Ia~G~~hs~~Lt~dG~Vy~wG~N~~GqLG~g--~~~~~~~P~~V-~~l~~~~I~~Va~G~~hs~aLT~dG~Vy~ 387 (893)
..+++.|.+-.+..++|.+.|++|.|-+...--|-.. .......|..- -.+.+.+|+.+++..-..-++|++|+|-+
T Consensus 373 an~~I~I~A~s~el~AlhrkGelYqWaWdESEglddplai~kn~dHPd~a~iG~hge~ii~lSanniR~si~T~nghlas 452 (3015)
T KOG0943|consen 373 ANKFICIGALSSELLALHRKGELYQWAWDESEGLDDPLAINKNLDHPDAAFIGLHGEKIILLSANNIRASIATENGHLAS 452 (3015)
T ss_pred CCeeEEeehhHHHHHHHhhCCceeeeecccccCCCChhhcccCCCCCccceecccCCeeEEeecCceeeeeeecCCchhh
Confidence 3457777777788899999999999997654333221 12223333322 24567899999999999999999999999
Q ss_pred cCCCCCCCCccCCCCCc--ceeeeeeecCCCCCceEEEEeeCCCeEEEEecCCeEEEeecCCCcc
Q 002677 388 WGDGTYNFGLLGHGNEV--SHWVPKRVNGPLEGIHVSSISCGPWHTAVVTSAGQLFTFGDGTFGV 450 (893)
Q Consensus 388 wG~n~~~~GqLG~g~~~--~~~~P~~v~~~l~~~~I~~Ia~G~~hs~aLt~~G~Vy~wG~n~~GQ 450 (893)
|=+- +|.+... .+..-+++ .+.++.+++..|-..|.++..++.-+|-||---+-+
T Consensus 453 WlDE------cgagV~fkLa~ea~Tki--eed~~maVqd~~~adhlaAf~~dniihWcGiVPf~e 509 (3015)
T KOG0943|consen 453 WLDE------CGAGVAFKLAHEAQTKI--EEDGEMAVQDHCCADHLAAFLEDNIIHWCGIVPFSE 509 (3015)
T ss_pred HHhh------hhhhhhhhhhhhhhhhh--hhhhHHHHHHHHHHHHHHHHhhhceeeEEeeeeehh
Confidence 9543 2222111 11112222 245678888889999999999999999999554433
No 71
>cd01222 PH_clg Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg contains a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=87.80 E-value=3.6 Score=37.75 Aligned_cols=35 Identities=29% Similarity=0.525 Sum_probs=31.5
Q ss_pred CCCEEEEEECC---CceeEEeCCHHHHHHHHHHHHHHH
Q 002677 95 EYQSFSLIYND---RSLDLICKDKDEAEVWFSGLKALI 129 (893)
Q Consensus 95 ~~~~FSiiy~~---rtLDLva~~~~e~~~Wv~gL~~Li 129 (893)
+.++|.|+-.+ +++.|-|+|+++-+.|+..|+.+|
T Consensus 58 d~~~F~v~~~~~p~~~~~l~A~s~e~K~~W~~~i~~~i 95 (97)
T cd01222 58 EPLCFRVIPFDDPKGALQLTARNREEKRIWTQQLKRAM 95 (97)
T ss_pred CCcEEEEEecCCCceEEEEEecCHHHHHHHHHHHHHHh
Confidence 46999998865 699999999999999999999876
No 72
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only]
Probab=87.11 E-value=73 Score=37.91 Aligned_cols=70 Identities=21% Similarity=0.296 Sum_probs=50.7
Q ss_pred CEEEEEecC-CeEEEEEcCCcEEE-EeCCCCCCcCCCCCCCccccEEecccCCCcEEEEEeCCceEEEEEcCCCEEEc
Q 002677 313 DVQNIACGG-RHAALVNKQGEVFS-WGEESGGRLGHGVDSDVLHPKLIDALSNMNIELVACGEYHTCAVTLSGDLYTW 388 (893)
Q Consensus 313 ~V~~Ia~G~-~hs~~Lt~dG~Vy~-wG~N~~GqLG~g~~~~~~~P~~V~~l~~~~I~~Va~G~~hs~aLT~dG~Vy~w 388 (893)
++.+|++|- .-..+||.+|.||. -|--...+.|..=. ++..|.... .++.|+.|....-+||.+|.||.=
T Consensus 228 ~L~qISagPtg~VwAvt~nG~vf~R~GVsRqNp~GdsWk-dI~tP~~a~-----~~v~iSvGt~t~Waldndg~lwfr 299 (705)
T KOG3669|consen 228 DLSQISAGPTGVVWAVTENGAVFYREGVSRQNPEGDSWK-DIVTPRQAL-----EPVCISVGTQTLWALDNDGNLWFR 299 (705)
T ss_pred ccceEeecCcceEEEEeeCCcEEEEecccccCCCCchhh-hccCccccc-----ceEEEEeccceEEEEecCCcEEEE
Confidence 688999998 67779999999886 55444444443222 344444322 289999999999999999999753
No 73
>PLN02153 epithiospecifier protein
Probab=86.76 E-value=59 Score=36.46 Aligned_cols=16 Identities=19% Similarity=0.235 Sum_probs=11.7
Q ss_pred eeEEEecCCeEEEecC
Q 002677 598 HVAVLTSKTEVYTWGK 613 (893)
Q Consensus 598 Ht~aLt~~G~Vy~WG~ 613 (893)
+++.+..+++||.||-
T Consensus 307 ~~~~v~~~~~~~~~gG 322 (341)
T PLN02153 307 TTATVYGKNGLLMHGG 322 (341)
T ss_pred cccccCCcceEEEEcC
Confidence 4556667779999984
No 74
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only]
Probab=84.86 E-value=7 Score=45.93 Aligned_cols=107 Identities=21% Similarity=0.260 Sum_probs=68.1
Q ss_pred ecCCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCc-cccEEecccCCCcEEEEEeCC-ceEEEEEcCCCEE-EcCCCCCCC
Q 002677 319 CGGRHAALVNKQGEVFSWGEESGGRLGHGVDSDV-LHPKLIDALSNMNIELVACGE-YHTCAVTLSGDLY-TWGDGTYNF 395 (893)
Q Consensus 319 ~G~~hs~~Lt~dG~Vy~wG~N~~GqLG~g~~~~~-~~P~~V~~l~~~~I~~Va~G~-~hs~aLT~dG~Vy-~wG~n~~~~ 395 (893)
.|...+.+|+.+|++|. +-|....... ..-+.+... ..+.+|++|. ....+|+.+|.|| --|-. .+
T Consensus 190 ~g~~~awAI~s~Gd~y~-------RtGvs~~~P~GraW~~i~~~--t~L~qISagPtg~VwAvt~nG~vf~R~GVs--Rq 258 (705)
T KOG3669|consen 190 LGDDTAWAIRSSGDLYL-------RTGVSVDRPCGRAWKVICPY--TDLSQISAGPTGVVWAVTENGAVFYREGVS--RQ 258 (705)
T ss_pred CCceEEEEEecCCcEEE-------eccccCCCCCCceeeecCCC--CccceEeecCcceEEEEeeCCcEEEEeccc--cc
Confidence 45566778888888885 1222222211 111222221 2588999998 7788999999975 46655 44
Q ss_pred CccCCCCCcceeeeeeecCCCCCceEEEEeeCCCeEEEEecCCeEEEe
Q 002677 396 GLLGHGNEVSHWVPKRVNGPLEGIHVSSISCGPWHTAVVTSAGQLFTF 443 (893)
Q Consensus 396 GqLG~g~~~~~~~P~~v~~~l~~~~I~~Ia~G~~hs~aLt~~G~Vy~w 443 (893)
.+.|..-. ....|... ..++.|+.|....-+||.+|.||.=
T Consensus 259 Np~GdsWk-dI~tP~~a------~~~v~iSvGt~t~Waldndg~lwfr 299 (705)
T KOG3669|consen 259 NPEGDSWK-DIVTPRQA------LEPVCISVGTQTLWALDNDGNLWFR 299 (705)
T ss_pred CCCCchhh-hccCcccc------cceEEEEeccceEEEEecCCcEEEE
Confidence 55554332 23333332 2399999999999999999999853
No 75
>cd01237 Unc112 Unc-112 pleckstrin homology (PH) domain. Unc-112 pleckstrin homology (PH) domain. Unc-112 and related proteins contain two FERM domains with a PH domain between them. Both the PH and FERM domains have a PH-like fold. The FERM domains are likely responsible for the role of Unc-112 in organizing beta-integrin. The specific role of the Unc-112 PH domain is not known, but it is predicted to be involved in mediating membrane interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=84.74 E-value=5.9 Score=36.85 Aligned_cols=78 Identities=18% Similarity=0.290 Sum_probs=46.1
Q ss_pred EEecCCCceEEEEEEeCCCCEEEEecCCc----eeeEEcccccceeeccCchhhhcCCCCCCCCCEEEEEE--C----CC
Q 002677 37 KYGRRGKPKFCPFRLSNDESVLIWFSGKE----EKHLKLSHVSRIISGQRTPIFQRYPRPEKEYQSFSLIY--N----DR 106 (893)
Q Consensus 37 K~~~~~~p~~r~f~l~~d~~~l~W~~~~~----~~~i~l~~I~eIr~G~~t~~f~~~~~~~~~~~~FSiiy--~----~r 106 (893)
|+.-++ -|+|+|.|. | ..|.++.+++ +..+.|.-..-++. .+...+...|+|.. . .|
T Consensus 14 ~~~~K~-~KrrwF~lk-~-~~L~YyK~kee~~~~p~i~lnl~gcev~----------~dv~~~~~kf~I~l~~ps~~~~r 80 (106)
T cd01237 14 KLTLKG-YKQYWFTFR-D-TSISYYKSKEDSNGAPIGQLNLKGCEVT----------PDVNVAQQKFHIKLLIPTAEGMN 80 (106)
T ss_pred hhhhhh-heeEEEEEe-C-CEEEEEccchhcCCCCeEEEecCceEEc----------ccccccccceEEEEecCCccCCe
Confidence 334445 377788887 4 6777766543 33344432111111 11111233455555 2 27
Q ss_pred ceeEEeCCHHHHHHHHHHHHH
Q 002677 107 SLDLICKDKDEAEVWFSGLKA 127 (893)
Q Consensus 107 tLDLva~~~~e~~~Wv~gL~~ 127 (893)
+.-|-|+|++|++.|+.+++.
T Consensus 81 ~y~l~cdsEeqya~Wmaa~rl 101 (106)
T cd01237 81 EVWLRCDNEKQYAKWMAACRL 101 (106)
T ss_pred EEEEECCCHHHHHHHHHHHHH
Confidence 999999999999999999874
No 76
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=83.24 E-value=3 Score=54.58 Aligned_cols=72 Identities=10% Similarity=0.060 Sum_probs=43.6
Q ss_pred CCceeeeecCCcE-EEEEecCCcEEEEcCCCCCcCCCCCCCCCcCceeccccCCCceEEEEecCCeeEEEecCC
Q 002677 534 EPNFCRVACGHSL-TVALTTSGHVYTMGSPVYGQLGNPQADGKLPNRVEGKLSKSFVEEIACGSYHVAVLTSKT 606 (893)
Q Consensus 534 ~~~I~~Ia~G~~h-tvaLt~dG~Vy~wG~N~~GQLG~~~~~~~~P~~v~~~l~~~~V~~Is~G~~Ht~aLt~~G 606 (893)
...|+.|++-..| -+|||.+|++|..=.-..-..-.+........+|..+ .+..|..+....+|.+.+.-++
T Consensus 743 ~G~ik~l~lD~~~nL~Alt~~G~Lf~~~k~~WQ~~~~~~~~~~~W~~v~lP-~~~~v~~l~~~~~~~l~~~~~d 815 (1774)
T PF11725_consen 743 SGEIKDLALDEKQNLYALTSTGELFRLPKEAWQGNAEGDQMAAKWQKVALP-DEQPVKSLRTNDDNHLSAQIED 815 (1774)
T ss_pred CcchhheeeccccceeEecCCCceeecCHHHhhCcccCCccccCceeccCC-CCCchhhhhcCCCCceEEEecC
Confidence 3589999998886 4689999999974322111111111111222333322 4567899999999888776544
No 77
>cd01253 PH_beta_spectrin Beta-spectrin pleckstrin homology (PH) domain. Beta-spectrin pleckstrin homology (PH) domain. Beta spectrin binds actin and functions as a major component of the cytoskeleton underlying cellular membranes. Beta spectrin consists of multiple spectrin repeats followed by a PH domain, which binds to Inositol-1,4,5-Trisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. PH domains are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=81.98 E-value=14 Score=33.83 Aligned_cols=33 Identities=24% Similarity=0.432 Sum_probs=28.4
Q ss_pred CCCEEEEEECC-CceeEEeCCHHHHHHHHHHHHH
Q 002677 95 EYQSFSLIYND-RSLDLICKDKDEAEVWFSGLKA 127 (893)
Q Consensus 95 ~~~~FSiiy~~-rtLDLva~~~~e~~~Wv~gL~~ 127 (893)
...+|.|...+ +.+=|.|++.++++.|+..|+.
T Consensus 70 ~~~~F~l~~~~~~~~~f~a~s~e~~~~Wi~aL~~ 103 (104)
T cd01253 70 KKHVFRLRLPDGAEFLFQAPDEEEMSSWVRALKS 103 (104)
T ss_pred CceEEEEEecCCCEEEEECCCHHHHHHHHHHHhc
Confidence 35789998754 8999999999999999999874
No 78
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=79.78 E-value=0.22 Score=61.51 Aligned_cols=128 Identities=19% Similarity=0.191 Sum_probs=83.5
Q ss_pred CCcEEEEEeCCceEEEEEcCCCEEEcCCCCCCCCccCCC--CCcceeeeeeecCCCCCceEEEEeeCCCeEEEEecCCeE
Q 002677 363 NMNIELVACGEYHTCAVTLSGDLYTWGDGTYNFGLLGHG--NEVSHWVPKRVNGPLEGIHVSSISCGPWHTAVVTSAGQL 440 (893)
Q Consensus 363 ~~~I~~Va~G~~hs~aLT~dG~Vy~wG~n~~~~GqLG~g--~~~~~~~P~~v~~~l~~~~I~~Ia~G~~hs~aLt~~G~V 440 (893)
..+++.|.+-.+..++|..+|++|.|-+... --+-.. ...+..-|..-...+.+.+|+.+++..--.-++|++|+|
T Consensus 373 an~~I~I~A~s~el~AlhrkGelYqWaWdES--Eglddplai~kn~dHPd~a~iG~hge~ii~lSanniR~si~T~nghl 450 (3015)
T KOG0943|consen 373 ANKFICIGALSSELLALHRKGELYQWAWDES--EGLDDPLAINKNLDHPDAAFIGLHGEKIILLSANNIRASIATENGHL 450 (3015)
T ss_pred CCeeEEeehhHHHHHHHhhCCceeeeecccc--cCCCChhhcccCCCCCccceecccCCeeEEeecCceeeeeeecCCch
Confidence 3578888888888999999999999987732 112111 111222343333346788999999999999999999999
Q ss_pred EEeecCCCcccCCCCCcccc--cceeeeccCCCeEEEEEeCCceEEEEEEeeecCCCccccCCCcEEEEeC
Q 002677 441 FTFGDGTFGVLGHGDRKSVS--IPREVESLKGLRTVRAACGVWHTAAVVEVMVGNSSSSNCSSGKLFTWGD 509 (893)
Q Consensus 441 y~wG~n~~GQLG~g~~~~~~--~P~~V~~l~~~~I~~Va~G~~ht~alte~~~~~s~~~~~~~G~ly~wG~ 509 (893)
.+|=+- +|.|-..... .-+.+ .+.+..+++.-|...|+++..+ ++-+|-||-
T Consensus 451 asWlDE----cgagV~fkLa~ea~Tki-eed~~maVqd~~~adhlaAf~~------------dniihWcGi 504 (3015)
T KOG0943|consen 451 ASWLDE----CGAGVAFKLAHEAQTKI-EEDGEMAVQDHCCADHLAAFLE------------DNIIHWCGI 504 (3015)
T ss_pred hhHHhh----hhhhhhhhhhhhhhhhh-hhhhHHHHHHHHHHHHHHHHhh------------hceeeEEee
Confidence 999532 3333221111 11111 2334456667777888888774 888999993
No 79
>KOG3723 consensus PH domain protein Melted [Signal transduction mechanisms]
Probab=79.10 E-value=1 Score=52.38 Aligned_cols=84 Identities=20% Similarity=0.334 Sum_probs=61.8
Q ss_pred ceEEEEEEeCCCCEEEEec-CC----ceeeEEccccccee-eccCchhhhcCCCCCCCCCEEEEEECCCceeEEeCCHHH
Q 002677 44 PKFCPFRLSNDESVLIWFS-GK----EEKHLKLSHVSRII-SGQRTPIFQRYPRPEKEYQSFSLIYNDRSLDLICKDKDE 117 (893)
Q Consensus 44 p~~r~f~l~~d~~~l~W~~-~~----~~~~i~l~~I~eIr-~G~~t~~f~~~~~~~~~~~~FSiiy~~rtLDLva~~~~e 117 (893)
-+.|+|.|+.- .|.+.. +. ....|+|+.|+.|+ .|++- -+ -.....|-|+.-++|+=|-|+|+.-
T Consensus 754 W~TrYFTLSgA--~L~~~kg~s~~dS~~~~IDl~~IRSVk~v~~kr--~~-----rslpKAFEIFTAD~T~ILKaKDeKN 824 (851)
T KOG3723|consen 754 WKTRYFTLSGA--QLLFQKGKSKDDSDDCPIDLSKIRSVKAVAKKR--RD-----RSLPKAFEIFTADKTYILKAKDEKN 824 (851)
T ss_pred hccceEEecch--hhhcccCCCCCCCCCCCccHHHhhhHHHHHhhh--hh-----cccchhhheeecCceEEeecccccC
Confidence 36678888865 455522 21 23459999999998 66421 11 1224578899999999999999999
Q ss_pred HHHHHHHHHHHHHcccccc
Q 002677 118 AEVWFSGLKALISRSHHRK 136 (893)
Q Consensus 118 ~~~Wv~gL~~Li~~~~~~~ 136 (893)
|+.|+..|...+++++.+.
T Consensus 825 AEEWlqCL~IavAHa~~r~ 843 (851)
T KOG3723|consen 825 AEEWLQCLNIAVAHAKERE 843 (851)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988653
No 80
>KOG3551 consensus Syntrophins (type beta) [Extracellular structures]
Probab=79.04 E-value=4.4 Score=45.32 Aligned_cols=105 Identities=24% Similarity=0.374 Sum_probs=67.9
Q ss_pred cHHHHHHHHhcCC-e-E--EEEecCCCceEEEEEEeCCCCEEEEecCCc-------------eeeEEcccccceeeccCc
Q 002677 21 DTEQAITALKKGA-C-L--LKYGRRGKPKFCPFRLSNDESVLIWFSGKE-------------EKHLKLSHVSRIISGQRT 83 (893)
Q Consensus 21 ~~~~~l~~L~~G~-~-l--~K~~~~~~p~~r~f~l~~d~~~l~W~~~~~-------------~~~i~l~~I~eIr~G~~t 83 (893)
..||++++||+-. . | +||.|.--|+++.=.+-.+ |-|+.... .+.+....=.+.++=+-+
T Consensus 147 tHdeAVqaLKraGkeV~levKy~REvtPy~kk~sivs~---vgWe~~~p~sp~~~~~~dsp~~~~~~~~~d~k~IpLKm~ 223 (506)
T KOG3551|consen 147 THDEAVQALKRAGKEVLLEVKYMREVTPYFKKESIVSE---VGWEDPAPQSPSLGGSEDSPSPKHINFRKDRKTIPLKMA 223 (506)
T ss_pred chHHHHHHHHhhCceeeeeeeeehhcchhhccCccccc---cCcCCCCccCcccCCCCCCCCCCcccccccccccchhhH
Confidence 5689999997643 2 2 3888887788876555444 77965311 111222111111122223
Q ss_pred hhhhcCCCCCCCCCEEEEEECC--CceeEEeCCHHHHHHHHHHHHHH
Q 002677 84 PIFQRYPRPEKEYQSFSLIYND--RSLDLICKDKDEAEVWFSGLKAL 128 (893)
Q Consensus 84 ~~f~~~~~~~~~~~~FSiiy~~--rtLDLva~~~~e~~~Wv~gL~~L 128 (893)
-+-|+....++|.+||-|--.+ .||=|-|+|.+||+.|+.+|.+-
T Consensus 224 yvaR~~~~~DpEnR~lEihSpdg~~tliLR~kdsa~A~~Wf~AiHa~ 270 (506)
T KOG3551|consen 224 YVARNLIDADPENRQLEIHSPDGRHTLILRAKDSAEADSWFEAIHAN 270 (506)
T ss_pred HHHhhCCCCCcccceeeeeCCCCcceEEEEccCcHHHHHHHHHHHHH
Confidence 3334446678999999998855 69999999999999999998543
No 81
>KOG1090 consensus Predicted dual-specificity phosphatase [General function prediction only]
Probab=77.94 E-value=1.7 Score=53.61 Aligned_cols=79 Identities=19% Similarity=0.271 Sum_probs=60.1
Q ss_pred CCceEEEEEEeCCCCEEEEecC----CceeeEEcccccceeeccCchhhhcCCCCCCCCCEEEEEECCCceeEEeCCHHH
Q 002677 42 GKPKFCPFRLSNDESVLIWFSG----KEEKHLKLSHVSRIISGQRTPIFQRYPRPEKEYQSFSLIYNDRSLDLICKDKDE 117 (893)
Q Consensus 42 ~~p~~r~f~l~~d~~~l~W~~~----~~~~~i~l~~I~eIr~G~~t~~f~~~~~~~~~~~~FSiiy~~rtLDLva~~~~e 117 (893)
+| +.|+|.|++|..+|+++.. +.+..|+|.+|+.|-.+. ++...+---|-+-...|+-.|.|.+..+
T Consensus 1649 ~W-k~RwFVLd~~khqlrYYd~~edt~pkG~IdLaevesv~~~~--------~k~vdekgffdlktt~rvynf~a~nin~ 1719 (1732)
T KOG1090|consen 1649 LW-KPRWFVLDPDKHQLRYYDDFEDTKPKGCIDLAEVESVALIG--------PKTVDEKGFFDLKTTNRVYNFCAQNINL 1719 (1732)
T ss_pred cc-ccceeEecCCccceeeecccccccccchhhhhhhhhhcccC--------ccccCccceeeeehhhHHHHHHhccchH
Confidence 44 7899999999999999874 467789999999887721 1112222334444466899999999999
Q ss_pred HHHHHHHHHHHH
Q 002677 118 AEVWFSGLKALI 129 (893)
Q Consensus 118 ~~~Wv~gL~~Li 129 (893)
|+.|+..|+..+
T Consensus 1720 AqqWve~iqscl 1731 (1732)
T KOG1090|consen 1720 AQQWVECIQSCL 1731 (1732)
T ss_pred HHHHHHHHHHhh
Confidence 999999998765
No 82
>PTZ00267 NIMA-related protein kinase; Provisional
Probab=75.50 E-value=7.5 Score=45.93 Aligned_cols=91 Identities=20% Similarity=0.325 Sum_probs=58.3
Q ss_pred CCeEEEEecCCCceEEEEEEeCCCCEEEEe-c----CCceeeEEcccccceeeccCchhhhcCCCCCCCCCEEEEEEC-C
Q 002677 32 GACLLKYGRRGKPKFCPFRLSNDESVLIWF-S----GKEEKHLKLSHVSRIISGQRTPIFQRYPRPEKEYQSFSLIYN-D 105 (893)
Q Consensus 32 G~~l~K~~~~~~p~~r~f~l~~d~~~l~W~-~----~~~~~~i~l~~I~eIr~G~~t~~f~~~~~~~~~~~~FSiiy~-~ 105 (893)
...+.|+....+-+.|+|.+..+...+.-. . ....+.+.+.+|..|.+ +.... ....+.||.|-.. +
T Consensus 380 ~G~l~k~~~~~~wk~ry~~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~p-----v~~~~--~~~~~~~~~i~~~~~ 452 (478)
T PTZ00267 380 GGYLYKYSSDMRWKKRYFYIGNGQLRISLSENPENDGVAPKSVNLETVNDVFP-----VPEVY--SQKHPNQLVLWFNNG 452 (478)
T ss_pred ceEEeccCCCcchhhheEEecCCceEEEeccccccCCCCCccccHHHhccccc-----ccHHh--cCCCCceEEEEecCC
Confidence 445677776656688889987654333321 1 11234566666655522 11111 1234778999774 4
Q ss_pred CceeEEeCCHHHHHHHHHHHHHHH
Q 002677 106 RSLDLICKDKDEAEVWFSGLKALI 129 (893)
Q Consensus 106 rtLDLva~~~~e~~~Wv~gL~~Li 129 (893)
+.+=++|++++|++.|+..|+..+
T Consensus 453 ~~~~~~~~~~~~~~~W~~~~~~~~ 476 (478)
T PTZ00267 453 QKIIAYAKTAEDRDQWISKFQRAC 476 (478)
T ss_pred cEEEEecCChHHHHHHHHHHHHHh
Confidence 788899999999999999998765
No 83
>cd01240 PH_beta-ARK Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain. Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain. Beta ARK1 is a G protein-coupled receptor kinase (GRK). It phosphorylates activated G-protein coupled receptors leading to the release of the previously bound heterotrimeric G protein agonist and thus signal termination. It consists of a domain found in regulators of G-protein signaling (RGS)(RH), a serine/threonine kinase domain and a C-terminal PH domain. The Beta-Ark 1 PH domain has an extended C-terminal helix, which mediates interactions with G beta gamma subunits. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or
Probab=74.86 E-value=5.2 Score=37.10 Aligned_cols=78 Identities=19% Similarity=0.276 Sum_probs=59.3
Q ss_pred eEEEEEEeCCCCEEEEecCC---ceeeEEcccccceeeccCchhhhcCCCCCCCCCEEEEEECC-CceeEEeCCHHHHHH
Q 002677 45 KFCPFRLSNDESVLIWFSGK---EEKHLKLSHVSRIISGQRTPIFQRYPRPEKEYQSFSLIYND-RSLDLICKDKDEAEV 120 (893)
Q Consensus 45 ~~r~f~l~~d~~~l~W~~~~---~~~~i~l~~I~eIr~G~~t~~f~~~~~~~~~~~~FSiiy~~-rtLDLva~~~~e~~~ 120 (893)
+.|+|+|=|+ +|-|++.. +..-|.+++|++|..- |.. .+.+.|..|..++ +-+=|-|.|+-++..
T Consensus 21 Q~Ry~~LfPN--RLE~~~~~~~~~~eLi~M~~i~~V~~e-----~~~----iK~~~CI~ik~k~~~k~vlt~~d~i~l~q 89 (116)
T cd01240 21 QTRYFKLYPN--RLELYGESEANKPELITMDQIEDVSVE-----FQQ----IKEENCILLKIRDEKKIVLTNSDEIELKQ 89 (116)
T ss_pred HHHHheeCcc--eeeecccccccCCcEEEeehhhhcchh-----hee----eccCceEEEEEcCCceEEEecCCcHHHHH
Confidence 5678899887 67886532 3345888999998754 222 4678899999966 678999999999999
Q ss_pred HHHHHHHHHHccc
Q 002677 121 WFSGLKALISRSH 133 (893)
Q Consensus 121 Wv~gL~~Li~~~~ 133 (893)
|..-|+......+
T Consensus 90 W~~elr~a~r~Sq 102 (116)
T cd01240 90 WKKELRDAHRESQ 102 (116)
T ss_pred HHHHHHHHHHHHH
Confidence 9999986655544
No 84
>PF15406 PH_6: Pleckstrin homology domain
Probab=74.44 E-value=7.2 Score=36.24 Aligned_cols=68 Identities=18% Similarity=0.214 Sum_probs=49.5
Q ss_pred EEEEEEeCCCCEEEEecC-----CceeeEEcccccceeeccCchhhhcCCCCCCCCCEEEEEECCCceeEEeCCHHHHHH
Q 002677 46 FCPFRLSNDESVLIWFSG-----KEEKHLKLSHVSRIISGQRTPIFQRYPRPEKEYQSFSLIYNDRSLDLICKDKDEAEV 120 (893)
Q Consensus 46 ~r~f~l~~d~~~l~W~~~-----~~~~~i~l~~I~eIr~G~~t~~f~~~~~~~~~~~~FSiiy~~rtLDLva~~~~e~~~ 120 (893)
.+.=+-+..++-|..++. .+...|.|.|+.+|...-.. -|++-..++..-+.|.+.+|++.
T Consensus 39 ~~~AwAsqTGKGLLF~~K~~dka~P~GiinLadase~~~~g~~--------------kF~f~~~G~khtF~A~s~aERD~ 104 (112)
T PF15406_consen 39 PTAAWASQTGKGLLFFSKAEDKASPSGIINLADASEPEKDGSN--------------KFHFKIKGHKHTFEAASAAERDN 104 (112)
T ss_pred chhhhhhccCceEEEEeccccccCCcceEehhhccccccCCCc--------------eEEEEeCCceeeeecCCHHHhcc
Confidence 333445555555666552 24556999999998765544 37777788889999999999999
Q ss_pred HHHHHHH
Q 002677 121 WFSGLKA 127 (893)
Q Consensus 121 Wv~gL~~ 127 (893)
||..|+.
T Consensus 105 Wv~~lk~ 111 (112)
T PF15406_consen 105 WVAQLKA 111 (112)
T ss_pred HHHHhhc
Confidence 9998863
No 85
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=74.32 E-value=1.4e+02 Score=32.53 Aligned_cols=63 Identities=27% Similarity=0.431 Sum_probs=36.3
Q ss_pred CceEEEEEcCCCEEEcCCCCCCCCccCC----CCCcceeeeeeecCCCCCceEEEEeeCCCeEEEEecCCeEEEee
Q 002677 373 EYHTCAVTLSGDLYTWGDGTYNFGLLGH----GNEVSHWVPKRVNGPLEGIHVSSISCGPWHTAVVTSAGQLFTFG 444 (893)
Q Consensus 373 ~~hs~aLT~dG~Vy~wG~n~~~~GqLG~----g~~~~~~~P~~v~~~l~~~~I~~Ia~G~~hs~aLt~~G~Vy~wG 444 (893)
..|+++.- ++++|.||-.....|.+.. ......|.-.+|.+.+.+ +-..|++++-. .+.|.||
T Consensus 80 YGHtvV~y-~d~~yvWGGRND~egaCN~Ly~fDp~t~~W~~p~v~G~vPg-------aRDGHsAcV~g-n~MyiFG 146 (392)
T KOG4693|consen 80 YGHTVVEY-QDKAYVWGGRNDDEGACNLLYEFDPETNVWKKPEVEGFVPG-------ARDGHSACVWG-NQMYIFG 146 (392)
T ss_pred cCceEEEE-cceEEEEcCccCcccccceeeeeccccccccccceeeecCC-------ccCCceeeEEC-cEEEEec
Confidence 46776655 6789999855222343322 122334555555554433 33568877764 4789998
No 86
>PHA03098 kelch-like protein; Provisional
Probab=73.22 E-value=1.7e+02 Score=35.04 Aligned_cols=16 Identities=13% Similarity=0.254 Sum_probs=11.2
Q ss_pred CeEEEEecCCeEEEeec
Q 002677 429 WHTAVVTSAGQLFTFGD 445 (893)
Q Consensus 429 ~hs~aLt~~G~Vy~wG~ 445 (893)
.|+++. -+|+||.+|-
T Consensus 335 ~~~~~~-~~~~lyv~GG 350 (534)
T PHA03098 335 NPGVTV-FNNRIYVIGG 350 (534)
T ss_pred cceEEE-ECCEEEEEeC
Confidence 455444 4789999994
No 87
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=73.17 E-value=3.5 Score=32.21 Aligned_cols=25 Identities=44% Similarity=0.454 Sum_probs=22.4
Q ss_pred chhhHhhhHHHHHHHHHHHHhhhhc
Q 002677 868 VDDAKRTNDSLSQEVIKLRAQVFAF 892 (893)
Q Consensus 868 ~~~~~~~~~~~~~~~~~~~~~~~~~ 892 (893)
-|.|+.-++.|.+|..+|++||..|
T Consensus 14 yd~Lk~~~~~L~~E~~~L~aev~~L 38 (45)
T PF02183_consen 14 YDSLKAEYDSLKKENEKLRAEVQEL 38 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999865
No 88
>PHA03098 kelch-like protein; Provisional
Probab=73.13 E-value=1.3e+02 Score=36.13 Aligned_cols=17 Identities=12% Similarity=0.218 Sum_probs=11.8
Q ss_pred ceEEEEEcCCCEEEcCCC
Q 002677 374 YHTCAVTLSGDLYTWGDG 391 (893)
Q Consensus 374 ~hs~aLT~dG~Vy~wG~n 391 (893)
.|+++ .-+|+||.+|-.
T Consensus 335 ~~~~~-~~~~~lyv~GG~ 351 (534)
T PHA03098 335 NPGVT-VFNNRIYVIGGI 351 (534)
T ss_pred cceEE-EECCEEEEEeCC
Confidence 45544 447999999864
No 89
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=72.03 E-value=3.3e+02 Score=35.94 Aligned_cols=217 Identities=16% Similarity=0.136 Sum_probs=109.4
Q ss_pred EEEEcCCcEEEEeCCCCCCcCCCCCC--CccccEEecccCCCcEEEEEeCCceEEEEEcCCCEEEcCCCCCCCCccCCCC
Q 002677 325 ALVNKQGEVFSWGEESGGRLGHGVDS--DVLHPKLIDALSNMNIELVACGEYHTCAVTLSGDLYTWGDGTYNFGLLGHGN 402 (893)
Q Consensus 325 ~~Lt~dG~Vy~wG~N~~GqLG~g~~~--~~~~P~~V~~l~~~~I~~Va~G~~hs~aLT~dG~Vy~wG~n~~~~GqLG~g~ 402 (893)
+-+|-|.++|.|-.|+.+++-.-+.. .+..-.+|..-.+.-+..| .|.++|..--+|+..|-.. .....+...
T Consensus 93 aWiTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~I----qhlLvvaT~~ei~ilgV~~-~~~~~~~~~ 167 (1311)
T KOG1900|consen 93 AWITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEI----QHLLVVATPVEIVILGVSF-DEFTGELSI 167 (1311)
T ss_pred eEEEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhh----heeEEecccceEEEEEEEe-ccccCcccc
Confidence 57899999999999987776432221 1112222222222222222 5889999888998887442 112222222
Q ss_pred CcceeeeeeecCCCCCceEEEEeeCCCeEEEEe-cCCeEEEe----ecCCCcc-cCCC----CCcccccceeeec--cCC
Q 002677 403 EVSHWVPKRVNGPLEGIHVSSISCGPWHTAVVT-SAGQLFTF----GDGTFGV-LGHG----DRKSVSIPREVES--LKG 470 (893)
Q Consensus 403 ~~~~~~P~~v~~~l~~~~I~~Ia~G~~hs~aLt-~~G~Vy~w----G~n~~GQ-LG~g----~~~~~~~P~~V~~--l~~ 470 (893)
.... +..+.+|..|..|.+-.+--++++ .+|.||-. +++-|++ +-.- ..-....|..+.. ...
T Consensus 168 f~~~-----~~i~~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~ 242 (1311)
T KOG1900|consen 168 FNTS-----FKISVDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSK 242 (1311)
T ss_pred cccc-----eeeecCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCC
Confidence 2111 222345666777765444444444 55555433 3344444 1111 1111233442221 224
Q ss_pred CeEEEEEeCCceEEEEEEeeecCCCccccCCCcEEEEeCCCCCCcCCCCCCc---------eeecEEeeccCCCceeeee
Q 002677 471 LRTVRAACGVWHTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDKEA---------KLVPTCVAALVEPNFCRVA 541 (893)
Q Consensus 471 ~~I~~Va~G~~ht~alte~~~~~s~~~~~~~G~ly~wG~n~~GQLG~g~~~~---------~~~P~~V~~l~~~~I~~Ia 541 (893)
..|.+|+-+....+..+- ...|.+-+|--+..|+-+.-.... ...-..+....-..|++|.
T Consensus 243 dpI~qi~ID~SR~IlY~l----------sek~~v~~Y~i~~~G~~~~r~~~~~~~~i~~qa~~~~~~~~~s~f~~IvsI~ 312 (1311)
T KOG1900|consen 243 DPIRQITIDNSRNILYVL----------SEKGTVSAYDIGGNGLGGPRFVSVSRNYIDVQALSLKNPLDDSVFFSIVSIS 312 (1311)
T ss_pred CcceeeEeccccceeeee----------ccCceEEEEEccCCCccceeeeehhHHHHHHHhhhccccCCCcccceeEEec
Confidence 478999998888877763 146777777655555443211000 0000001111113444443
Q ss_pred ------cCCcEEEEEecCC-cEEEEcC
Q 002677 542 ------CGHSLTVALTTSG-HVYTMGS 561 (893)
Q Consensus 542 ------~G~~htvaLt~dG-~Vy~wG~ 561 (893)
.-+-|.+|+|..| ++|.-|+
T Consensus 313 ~l~~~es~~l~LvA~ts~GvRlYfs~s 339 (1311)
T KOG1900|consen 313 PLSASESNDLHLVAITSTGVRLYFSTS 339 (1311)
T ss_pred ccCcccccceeEEEEecCCeEEEEecc
Confidence 3466899999999 4776654
No 90
>cd01239 PH_PKD Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. PKD consists of 2 C1 domains, followed by a PH domain and a kinase domain. While the PKD PH domain has not been shown to bind phosphorylated inositol lipids and is not required for membrane translocation, it is required for nuclear export. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=71.70 E-value=32 Score=32.45 Aligned_cols=88 Identities=14% Similarity=0.204 Sum_probs=51.2
Q ss_pred eEEEEecCCC-ceEEEEEEeCCCCEEEEe--cCCceeeEEcccccceeeccCchhhhcCCCCCCCCCEEEEEECCCceeE
Q 002677 34 CLLKYGRRGK-PKFCPFRLSNDESVLIWF--SGKEEKHLKLSHVSRIISGQRTPIFQRYPRPEKEYQSFSLIYNDRSLDL 110 (893)
Q Consensus 34 ~l~K~~~~~~-p~~r~f~l~~d~~~l~W~--~~~~~~~i~l~~I~eIr~G~~t~~f~~~~~~~~~~~~FSiiy~~rtLDL 110 (893)
.|+-|..+-+ .|+++++||...-.+.-. +++--|.|+|+||..|..-... . ......+.||-|+....+-=+
T Consensus 5 WmVHyT~~d~~rKRhYWrLDsK~Itlf~~e~~skyyKeIPLsEIl~V~~~~~~---~--~~~~~~~hcFEi~T~~~vY~V 79 (117)
T cd01239 5 WMVHYTSSDNRRKKHYWRLDSKAITLYQEESGSRYYKEIPLAEILSVSSNNGD---S--VLAKHPPHCFEIRTTTNVYFV 79 (117)
T ss_pred eEEEEecCccceeeeEEEecCCeEEEEEcCCCCeeeEEeehHHheEEeccCCC---c--CCCCCCCcEEEEEecCEEEEe
Confidence 4566655533 356667777664333221 1345667999999999852221 1 123556899999985432111
Q ss_pred --------------------EeCCHHHHHHHHHHHH
Q 002677 111 --------------------ICKDKDEAEVWFSGLK 126 (893)
Q Consensus 111 --------------------va~~~~e~~~Wv~gL~ 126 (893)
-....+.|+.|..+++
T Consensus 80 G~~~~~~~~~~~~~~~~~~~sg~g~~~a~~We~aI~ 115 (117)
T cd01239 80 GGEDYHAFSGGPPKKIPPSDSGRGSDNAQSWETAIR 115 (117)
T ss_pred cccccccCCCcccCCCCcccccchhHHHHHHHHHHh
Confidence 1123456888998876
No 91
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms]
Probab=71.64 E-value=2.2 Score=55.09 Aligned_cols=55 Identities=29% Similarity=0.699 Sum_probs=35.5
Q ss_pred ccccccccccCCCCccccccccccccCceEeecCCCCcccccccCCCCCCCcccccchhhhhccccC
Q 002677 663 VDQSMCSGCRLPFNNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVCDNCFNKLRKTFD 729 (893)
Q Consensus 663 ~d~s~Cs~C~~~F~~f~rkrhhC~~CG~v~C~~Cs~~~~~~~~~~~~~~~~~RVC~~C~~~l~~~~~ 729 (893)
.-.--|..|++.|..|.| +||| ||.+||.+| .......-+. .. +.|+.....-..
T Consensus 95 ~s~~ec~~~~~~~~t~Rr-~~~~--~gqi~~ss~----~~~~~~~~~~--e~---d~c~~~~~~~~~ 149 (1598)
T KOG0230|consen 95 SSSKECYDCEQKFETFRR-KHHC--CGQIFCSSC----IDGMSIRCDG--EL---DYCSRYVEDFAK 149 (1598)
T ss_pred cccchhhhhccchhhhhc-cccc--CccccCCcc----cCCccccccc--cc---chhHHHhhhhhc
Confidence 334569999999996555 6999 999999999 1111122222 22 888776655444
No 92
>PHA02713 hypothetical protein; Provisional
Probab=71.53 E-value=85 Score=38.04 Aligned_cols=20 Identities=10% Similarity=0.272 Sum_probs=13.6
Q ss_pred CCceEEEEEcCCCEEEcCCC
Q 002677 372 GEYHTCAVTLSGDLYTWGDG 391 (893)
Q Consensus 372 G~~hs~aLT~dG~Vy~wG~n 391 (893)
...+..+..-+|+||++|-.
T Consensus 341 ~R~~~~~~~~~g~IYviGG~ 360 (557)
T PHA02713 341 NRCRFSLAVIDDTIYAIGGQ 360 (557)
T ss_pred hhhceeEEEECCEEEEECCc
Confidence 34444455568999999964
No 93
>cd01223 PH_Vav Vav pleckstrin homology (PH) domain. Vav pleckstrin homology (PH) domain. Vav acts as a guanosine nucleotide exchange factor(GEF) for Rho/Rac proteins. Mammalian Vav proteins consist of a calponin homology (CH) domain, an acidic region, a rho-GEF (DH)domain, a PH domain, a Zinc finger region and an SH2 domain, flanked by two SH3 domains. In invertebrates such as Drosophila and C.elegans, Vav is missing the N-terminal SH3 domain . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=70.60 E-value=36 Score=32.24 Aligned_cols=36 Identities=17% Similarity=0.311 Sum_probs=30.7
Q ss_pred CEEEEEECC--CceeEEeCCHHHHHHHHHHHHHHHHcc
Q 002677 97 QSFSLIYND--RSLDLICKDKDEAEVWFSGLKALISRS 132 (893)
Q Consensus 97 ~~FSiiy~~--rtLDLva~~~~e~~~Wv~gL~~Li~~~ 132 (893)
.+|-|+..+ ..+.|.|+++|+.+.|+..|..-++..
T Consensus 77 ~~f~L~~~~~~~~~~f~~Ktee~K~kWm~al~~a~sni 114 (116)
T cd01223 77 YGFYLAHKQGKTGFTFYFKTEHLRKKWLKALEMAMSNI 114 (116)
T ss_pred EEEEEEecCCCccEEEEeCCHHHHHHHHHHHHHHHhcC
Confidence 588899966 479999999999999999998777653
No 94
>KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=70.23 E-value=1.4 Score=48.21 Aligned_cols=66 Identities=23% Similarity=0.503 Sum_probs=52.6
Q ss_pred eeeccCccccccccccCCCCccccccccccccCceEeecCCC----CcccccccCCCCCCCcccccchhhh
Q 002677 657 HKWVSGVDQSMCSGCRLPFNNFKRKRHNCYNCGLVFCHSCSS----KKSLKASMAPNPNKPYRVCDNCFNK 723 (893)
Q Consensus 657 ~kwv~~~d~s~Cs~C~~~F~~f~rkrhhC~~CG~v~C~~Cs~----~~~~~~~~~~~~~~~~RVC~~C~~~ 723 (893)
..|+.+.+...|..|...|. |.+++|+|+.||+++|..|.. ++.+.+.+-.-.+...+.|..|+..
T Consensus 12 ~~~~~~~e~~s~~~~~~e~~-~~~r~~~~~~~grv~~~q~~~~k~~rk~~q~r~~~l~~D~~~~~~~~~~~ 81 (288)
T KOG1729|consen 12 VDWQANSEANSCRNCKVEFC-FGRRGHPCRECGRVLCRQGTLVKRCRKKLQSRSFFLFNDILVYGNIVSDN 81 (288)
T ss_pred HHHHHhccchhhhhhcccch-hhhccCcccccchhhhhhhhhHHHHhcccccccccccccchhhcccccCH
Confidence 35788889999999999988 777799999999999999976 3334444444456778999999887
No 95
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=70.19 E-value=2.7 Score=46.59 Aligned_cols=74 Identities=24% Similarity=0.456 Sum_probs=43.8
Q ss_pred ccCCCccceeeee-eeccCccccccccccCCCCccccccccccccCceEeecCCCCcccccccCCC-CCCCcc--cccch
Q 002677 645 ACGTNFTAAICLH-KWVSGVDQSMCSGCRLPFNNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPN-PNKPYR--VCDNC 720 (893)
Q Consensus 645 acG~~hT~al~~~-kwv~~~d~s~Cs~C~~~F~~f~rkrhhC~~CG~v~C~~Cs~~~~~~~~~~~~-~~~~~R--VC~~C 720 (893)
.||+...+.+... .-..+...-.|+.|..... ..|..|.+||. +++.....+..+ ....+| +|+.|
T Consensus 189 vCGs~P~~s~~~~~~~~~G~RyL~CslC~teW~---~~R~~C~~Cg~-------~~~l~y~~~e~~~~~~~~r~e~C~~C 258 (305)
T TIGR01562 189 ACGSPPVASMVRQGGKETGLRYLSCSLCATEWH---YVRVKCSHCEE-------SKHLAYLSLEHDAEKAVLKAETCDSC 258 (305)
T ss_pred CCCChhhhhhhcccCCCCCceEEEcCCCCCccc---ccCccCCCCCC-------CCceeeEeecCCCCCcceEEeecccc
Confidence 4777776554321 1123344567999988755 34688988885 233333333221 123466 99999
Q ss_pred hhhhcccc
Q 002677 721 FNKLRKTF 728 (893)
Q Consensus 721 ~~~l~~~~ 728 (893)
...++...
T Consensus 259 ~~YlK~~~ 266 (305)
T TIGR01562 259 QGYLKILY 266 (305)
T ss_pred ccchhhhc
Confidence 98887764
No 96
>cd01227 PH_Dbs Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs is a guanine nucleotide exchange factor (GEF), which contains spectrin repeats, a rhoGEF (DH) domain and a PH domain. The Dbs PH domain participates in binding to both the Cdc42 and RhoA GTPases. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=67.26 E-value=40 Score=32.78 Aligned_cols=40 Identities=13% Similarity=0.345 Sum_probs=34.2
Q ss_pred CCCCEEEEEECC--CceeEEeCCHHHHHHHHHHHHHHHHccc
Q 002677 94 KEYQSFSLIYND--RSLDLICKDKDEAEVWFSGLKALISRSH 133 (893)
Q Consensus 94 ~~~~~FSiiy~~--rtLDLva~~~~e~~~Wv~gL~~Li~~~~ 133 (893)
.+.+.|.|-+++ .+..|-|+|++.-+.|+.-|+.|+..-.
T Consensus 78 gd~~kFeiw~~~~~~~yilqA~t~e~K~~Wv~~I~~iL~~Q~ 119 (133)
T cd01227 78 GDTKKFEIWYNAREEVYILQAPTPEIKAAWVNEIRKVLTSQL 119 (133)
T ss_pred CCccEEEEEeCCCCcEEEEEcCCHHHHHHHHHHHHHHHHHHH
Confidence 457899999866 4788999999999999999999987644
No 97
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=67.18 E-value=3.7 Score=45.52 Aligned_cols=74 Identities=20% Similarity=0.364 Sum_probs=45.1
Q ss_pred ccCCCccceeeeeeeccCccccccccccCCCCccccccccccccCceEeecCCCCcccccccCCC-CCCCcccccchhhh
Q 002677 645 ACGTNFTAAICLHKWVSGVDQSMCSGCRLPFNNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPN-PNKPYRVCDNCFNK 723 (893)
Q Consensus 645 acG~~hT~al~~~kwv~~~d~s~Cs~C~~~F~~f~rkrhhC~~CG~v~C~~Cs~~~~~~~~~~~~-~~~~~RVC~~C~~~ 723 (893)
.||+...+.+....-..+...-.|+.|+.... ..|..|.+||. +.+.....+... ....+-+|+.|...
T Consensus 192 vCGs~P~~s~v~~~~~~G~RyL~CslC~teW~---~~R~~C~~Cg~-------~~~l~y~~~~~~~~~~r~e~C~~C~~Y 261 (309)
T PRK03564 192 VCGSMPVSSVVQIGTTQGLRYLHCNLCESEWH---VVRVKCSNCEQ-------SGKLHYWSLDSEQAAVKAESCGDCGTY 261 (309)
T ss_pred CCCCcchhheeeccCCCCceEEEcCCCCCccc---ccCccCCCCCC-------CCceeeeeecCCCcceEeeeccccccc
Confidence 58887766643221123455667999998755 34688998884 233333333221 12355789999998
Q ss_pred hcccc
Q 002677 724 LRKTF 728 (893)
Q Consensus 724 l~~~~ 728 (893)
++...
T Consensus 262 lK~~~ 266 (309)
T PRK03564 262 LKILY 266 (309)
T ss_pred ceecc
Confidence 87753
No 98
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=67.13 E-value=1e+02 Score=37.56 Aligned_cols=22 Identities=18% Similarity=0.271 Sum_probs=16.9
Q ss_pred EEecCCeeEEEecCCeEEEecC
Q 002677 592 IACGSYHVAVLTSKTEVYTWGK 613 (893)
Q Consensus 592 Is~G~~Ht~aLt~~G~Vy~WG~ 613 (893)
+..+..+..+..-++++|+-|.
T Consensus 509 m~~~rs~~g~~~~~~~ly~vGG 530 (571)
T KOG4441|consen 509 MTSPRSAVGVVVLGGKLYAVGG 530 (571)
T ss_pred CccccccccEEEECCEEEEEec
Confidence 4456677777788999999985
No 99
>PLN02153 epithiospecifier protein
Probab=66.78 E-value=2.2e+02 Score=31.87 Aligned_cols=17 Identities=24% Similarity=0.524 Sum_probs=12.3
Q ss_pred ceEEEEEcCCCEEEcCCC
Q 002677 374 YHTCAVTLSGDLYTWGDG 391 (893)
Q Consensus 374 ~hs~aLT~dG~Vy~wG~n 391 (893)
.|++++ .+++||++|-.
T Consensus 130 ~~~~~~-~~~~iyv~GG~ 146 (341)
T PLN02153 130 FHSMAS-DENHVYVFGGV 146 (341)
T ss_pred eeEEEE-ECCEEEEECCc
Confidence 566554 57899999864
No 100
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=66.12 E-value=84 Score=39.34 Aligned_cols=71 Identities=23% Similarity=0.276 Sum_probs=42.1
Q ss_pred CCceEEEEEcCCC-EEEcCCCCCCCCccCCCCCcc-eeeeeeecCCCCCceEEEEeeCCCeEEEEecCCe--EEEeecCC
Q 002677 372 GEYHTCAVTLSGD-LYTWGDGTYNFGLLGHGNEVS-HWVPKRVNGPLEGIHVSSISCGPWHTAVVTSAGQ--LFTFGDGT 447 (893)
Q Consensus 372 G~~hs~aLT~dG~-Vy~wG~n~~~~GqLG~g~~~~-~~~P~~v~~~l~~~~I~~Ia~G~~hs~aLt~~G~--Vy~wG~n~ 447 (893)
+....++++.+|+ |+++|.+ |-.-.-...+ .-.|..|.. .+..|..|+|-..|.+.-++++. +|.++...
T Consensus 14 ~G~t~i~~d~~gefi~tcgsd----g~ir~~~~~sd~e~P~ti~~--~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~ 87 (933)
T KOG1274|consen 14 GGLTLICYDPDGEFICTCGSD----GDIRKWKTNSDEEEPETIDI--SGELVSSIACYSNHFLTGSEQNTVLRYKFPSGE 87 (933)
T ss_pred CceEEEEEcCCCCEEEEecCC----CceEEeecCCcccCCchhhc--cCceeEEEeecccceEEeeccceEEEeeCCCCC
Confidence 3345566666664 5666655 2111111111 134555442 46789999999999999999885 57776554
Q ss_pred C
Q 002677 448 F 448 (893)
Q Consensus 448 ~ 448 (893)
.
T Consensus 88 ~ 88 (933)
T KOG1274|consen 88 E 88 (933)
T ss_pred c
Confidence 4
No 101
>cd01259 PH_Apbb1ip Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip consists of a Ras-associated domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=64.25 E-value=43 Score=31.50 Aligned_cols=90 Identities=19% Similarity=0.277 Sum_probs=52.5
Q ss_pred cCCeEEEE-ecCCCceEEEEEEeCCCCEEEEecCCceee--------EEcccccceeeccCchhhhcCCCCCCCCCEEEE
Q 002677 31 KGACLLKY-GRRGKPKFCPFRLSNDESVLIWFSGKEEKH--------LKLSHVSRIISGQRTPIFQRYPRPEKEYQSFSL 101 (893)
Q Consensus 31 ~G~~l~K~-~~~~~p~~r~f~l~~d~~~l~W~~~~~~~~--------i~l~~I~eIr~G~~t~~f~~~~~~~~~~~~FSi 101 (893)
+|-..+|- ++++| +.++|.|-... | ++++|.+.. ..+++. .|=.|.. ++ ..-..+-+.||.|
T Consensus 3 ~g~LylK~~gkKsW-Kk~~f~LR~SG--L-Yy~~Kgksk~srdL~cl~~f~~~-nvY~~~~---~k-Kk~kAPTd~~F~~ 73 (114)
T cd01259 3 EGPLYLKADGKKSW-KKYYFVLRSSG--L-YYFPKEKTKNTRDLACLNLLHGH-NVYTGLG---WR-KKYKSPTDYCFGF 73 (114)
T ss_pred cceEEEccCCCccc-eEEEEEEeCCe--e-EEccCCCcCCHHHHHHHHhcccC-cEEEEec---hh-hccCCCCCceEEE
Confidence 46667775 78887 66778887763 3 433332111 222222 2333332 11 1223566788888
Q ss_pred EECC------Cce-eEEeCCHHHHHHHHHHHHHHH
Q 002677 102 IYND------RSL-DLICKDKDEAEVWFSGLKALI 129 (893)
Q Consensus 102 iy~~------rtL-DLva~~~~e~~~Wv~gL~~Li 129 (893)
=... +.| =|.|+|++.++.|+++||-+-
T Consensus 74 K~~~~q~~~s~~ik~lCaeDe~t~~~W~ta~Ri~K 108 (114)
T cd01259 74 KAVGDQSKGSQSIKYLCAEDLPTLDRWLTAIRIAK 108 (114)
T ss_pred eccccCcccchhheeeccCCHHHHHHHHHHHHHHh
Confidence 5522 334 377888999999999998654
No 102
>cd01228 PH_BCR-related BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. The BCR-related protein has a RhoGEF(DH) domain followed by a PH domain, a C2 domain and a RhoGAP domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinases, tyrosine kinases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=63.81 E-value=23 Score=32.28 Aligned_cols=81 Identities=23% Similarity=0.292 Sum_probs=51.0
Q ss_pred HhcCCeEEEEecCCCceEEEEEEeCCCCEEEEec------CCcee-----eEEcccccceeeccCchhhhcCCCCCCCCC
Q 002677 29 LKKGACLLKYGRRGKPKFCPFRLSNDESVLIWFS------GKEEK-----HLKLSHVSRIISGQRTPIFQRYPRPEKEYQ 97 (893)
Q Consensus 29 L~~G~~l~K~~~~~~p~~r~f~l~~d~~~l~W~~------~~~~~-----~i~l~~I~eIr~G~~t~~f~~~~~~~~~~~ 97 (893)
|.+-..|+|+.++ +|+.|.|.|=.| -|..-. .+..+ .|+|++|.-.-. .|+-.. .
T Consensus 3 Lv~eg~lvel~~~-~rK~R~~FLFnD--lLvc~~ik~~~~~k~~kY~~~w~IPL~dl~~~~~-----~~~~~~---~--- 68 (96)
T cd01228 3 LVKDSFLVELVEG-SRKLRHLFLFTD--VLLCAKLKKTSRGKHQQYDCKWYIPLADLSFPSE-----PFRIHN---K--- 68 (96)
T ss_pred ccccceeeeehhC-CCcceEEEeecc--EEEEEEeeeccCccccccceeEEEEhHHheecch-----hhhccc---c---
Confidence 3344568899855 789999999988 233321 12122 588887642211 132210 0
Q ss_pred EEEEEECCCceeEEeCCHHHHHHHHHHHHHHH
Q 002677 98 SFSLIYNDRSLDLICKDKDEAEVWFSGLKALI 129 (893)
Q Consensus 98 ~FSiiy~~rtLDLva~~~~e~~~Wv~gL~~Li 129 (893)
.++|.-+.|.+..|...|+..++.|-
T Consensus 69 ------~~KSf~~~asS~~Er~eW~~hI~~~~ 94 (96)
T cd01228 69 ------NGKSYTFLLSSDYERSEWRESIQKLQ 94 (96)
T ss_pred ------CCceEEEEecCHHHHHHHHHHHHHHh
Confidence 13577778999999999999987764
No 103
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=62.29 E-value=2.7e+02 Score=32.46 Aligned_cols=157 Identities=18% Similarity=0.196 Sum_probs=76.8
Q ss_pred ccccccCCCCCccccCCCCcEEEEcCCCCCCccCCCCCCCCccccccccCCCceEecccCCCCEEEEEecCCeEEEEE--
Q 002677 251 SAVSSSSQGSGHDDGDALGDVFIWGEGTGDGVLGGGLNRVGSCFGVKMDSSLPKALESAVVLDVQNIACGGRHAALVN-- 328 (893)
Q Consensus 251 ~~~~~~s~G~~~~~l~s~G~Vy~WG~n~~~GqLG~g~~~~~~~~~~~~~~~~P~~v~~~~~~~V~~Ia~G~~hs~~Lt-- 328 (893)
.++..+-.|....+-+..|++|+|=-+. |.|=.-- ..-...|..|....+-.+++|
T Consensus 85 ~al~s~n~G~~l~ag~i~g~lYlWelss--G~LL~v~--------------------~aHYQ~ITcL~fs~dgs~iiTgs 142 (476)
T KOG0646|consen 85 HALASSNLGYFLLAGTISGNLYLWELSS--GILLNVL--------------------SAHYQSITCLKFSDDGSHIITGS 142 (476)
T ss_pred eeeecCCCceEEEeecccCcEEEEEecc--ccHHHHH--------------------HhhccceeEEEEeCCCcEEEecC
Confidence 4444555566667777899999998877 3222110 011123555544444444444
Q ss_pred cCCcEEEEeCCCCCCcCCCCCCCccccEEecccCC--CcEEEEEeCCceEEEEEcCCCEEEcCCCCCCCCccCCCCCcce
Q 002677 329 KQGEVFSWGEESGGRLGHGVDSDVLHPKLIDALSN--MNIELVACGEYHTCAVTLSGDLYTWGDGTYNFGLLGHGNEVSH 406 (893)
Q Consensus 329 ~dG~Vy~wG~N~~GqLG~g~~~~~~~P~~V~~l~~--~~I~~Va~G~~hs~aLT~dG~Vy~wG~n~~~~GqLG~g~~~~~ 406 (893)
+||.|+.|=--.-- ...+...|.++..+.+ ..|.++.+|..- .+++||+-+...- -.+= +-..-
T Consensus 143 kDg~V~vW~l~~lv-----~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg-----~~~rl~TaS~D~t--~k~w--dlS~g 208 (476)
T KOG0646|consen 143 KDGAVLVWLLTDLV-----SADNDHSVKPLHIFSDHTLSITDLQIGSGG-----TNARLYTASEDRT--IKLW--DLSLG 208 (476)
T ss_pred CCccEEEEEEEeec-----ccccCCCccceeeeccCcceeEEEEecCCC-----ccceEEEecCCce--EEEE--Eeccc
Confidence 67888888643210 1111114455544443 367887777654 2445555443310 0000 00000
Q ss_pred eeeeeecCCCCCceEEEEeeCCCeEEEEecCCeEEEee
Q 002677 407 WVPKRVNGPLEGIHVSSISCGPWHTAVVTSAGQLFTFG 444 (893)
Q Consensus 407 ~~P~~v~~~l~~~~I~~Ia~G~~hs~aLt~~G~Vy~wG 444 (893)
..-..+.+|. ..+.+.|.-+..+.++=+++|++|..-
T Consensus 209 ~LLlti~fp~-si~av~lDpae~~~yiGt~~G~I~~~~ 245 (476)
T KOG0646|consen 209 VLLLTITFPS-SIKAVALDPAERVVYIGTEEGKIFQNL 245 (476)
T ss_pred eeeEEEecCC-cceeEEEcccccEEEecCCcceEEeee
Confidence 1111222211 123344455667777778899988653
No 104
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=62.16 E-value=2.3e+02 Score=30.59 Aligned_cols=69 Identities=16% Similarity=0.239 Sum_probs=39.6
Q ss_pred eEEEEEeCCceEEEEEEeeecCCCccccCCCcEEEEeCCCCCCcCCCCCCceeecEEeeccCCCceeeeec--CCcEEEE
Q 002677 472 RTVRAACGVWHTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDKEAKLVPTCVAALVEPNFCRVAC--GHSLTVA 549 (893)
Q Consensus 472 ~I~~Va~G~~ht~alte~~~~~s~~~~~~~G~ly~wG~n~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Ia~--G~~htva 549 (893)
.|..|.--.+.+-.|.- ..+|.|++|--... .-...+.|.. +..|.+++. -....++
T Consensus 126 pVn~vvlhpnQteLis~----------dqsg~irvWDl~~~------~c~~~liPe~-----~~~i~sl~v~~dgsml~a 184 (311)
T KOG0315|consen 126 PVNTVVLHPNQTELISG----------DQSGNIRVWDLGEN------SCTHELIPED-----DTSIQSLTVMPDGSMLAA 184 (311)
T ss_pred CcceEEecCCcceEEee----------cCCCcEEEEEccCC------ccccccCCCC-----CcceeeEEEcCCCcEEEE
Confidence 34455555555555541 26899999975332 1122233322 234444444 3456778
Q ss_pred EecCCcEEEEcC
Q 002677 550 LTTSGHVYTMGS 561 (893)
Q Consensus 550 Lt~dG~Vy~wG~ 561 (893)
.++.|+.|+|-.
T Consensus 185 ~nnkG~cyvW~l 196 (311)
T KOG0315|consen 185 ANNKGNCYVWRL 196 (311)
T ss_pred ecCCccEEEEEc
Confidence 899999999974
No 105
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=61.81 E-value=73 Score=34.80 Aligned_cols=137 Identities=20% Similarity=0.167 Sum_probs=78.4
Q ss_pred CccccCCCCcEEEEcCCCCCCccCCCCCCCCccccccccCCCceEecccCCCCEEEEEec---CCeEEEEEcCCcEEEEe
Q 002677 261 GHDDGDALGDVFIWGEGTGDGVLGGGLNRVGSCFGVKMDSSLPKALESAVVLDVQNIACG---GRHAALVNKQGEVFSWG 337 (893)
Q Consensus 261 ~~~~l~s~G~Vy~WG~n~~~GqLG~g~~~~~~~~~~~~~~~~P~~v~~~~~~~V~~Ia~G---~~hs~~Lt~dG~Vy~wG 337 (893)
+..+...+|.||.=+... |.+|+=+-.. -.++.+..| .-|.+++..||..|.+-
T Consensus 65 ~dvapapdG~VWft~qg~--gaiGhLdP~t---------------------Gev~~ypLg~Ga~Phgiv~gpdg~~Witd 121 (353)
T COG4257 65 FDVAPAPDGAVWFTAQGT--GAIGHLDPAT---------------------GEVETYPLGSGASPHGIVVGPDGSAWITD 121 (353)
T ss_pred cccccCCCCceEEecCcc--ccceecCCCC---------------------CceEEEecCCCCCCceEEECCCCCeeEec
Confidence 446778999999877765 6677554211 135555555 35888999999998875
Q ss_pred CC-CCCCcCCCCCCCccccEEecccCCCcEEEEEeCCceEEEEEcCCCEEEcCCCCCCCCccCCCCCcceeeeeeecCCC
Q 002677 338 EE-SGGRLGHGVDSDVLHPKLIDALSNMNIELVACGEYHTCAVTLSGDLYTWGDGTYNFGLLGHGNEVSHWVPKRVNGPL 416 (893)
Q Consensus 338 ~N-~~GqLG~g~~~~~~~P~~V~~l~~~~I~~Va~G~~hs~aLT~dG~Vy~wG~n~~~~GqLG~g~~~~~~~P~~v~~~l 416 (893)
.. .-++++...-.-..-|.. .+.+-++-.+.+++..|.||.-|.+-+ +|.|--........|.. .
T Consensus 122 ~~~aI~R~dpkt~evt~f~lp---------~~~a~~nlet~vfD~~G~lWFt~q~G~-yGrLdPa~~~i~vfpaP-q--- 187 (353)
T COG4257 122 TGLAIGRLDPKTLEVTRFPLP---------LEHADANLETAVFDPWGNLWFTGQIGA-YGRLDPARNVISVFPAP-Q--- 187 (353)
T ss_pred CcceeEEecCcccceEEeecc---------cccCCCcccceeeCCCccEEEeecccc-ceecCcccCceeeeccC-C---
Confidence 43 233333211111111111 233445566788999999999987732 34332222222222221 1
Q ss_pred CCceEEEEeeCCCeEEEEecCCeEEEe
Q 002677 417 EGIHVSSISCGPWHTAVVTSAGQLFTF 443 (893)
Q Consensus 417 ~~~~I~~Ia~G~~hs~aLt~~G~Vy~w 443 (893)
-+.-.-+++|-+|+||.-
T Consensus 188 ---------G~gpyGi~atpdGsvwya 205 (353)
T COG4257 188 ---------GGGPYGICATPDGSVWYA 205 (353)
T ss_pred ---------CCCCcceEECCCCcEEEE
Confidence 133456788999999875
No 106
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=60.97 E-value=39 Score=35.70 Aligned_cols=76 Identities=18% Similarity=0.285 Sum_probs=44.6
Q ss_pred CEEEEEecCCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCccccEEec-----ccCCCcEEEEEeC-CceEEEEEcCCCEE
Q 002677 313 DVQNIACGGRHAALVNKQGEVFSWGEESGGRLGHGVDSDVLHPKLID-----ALSNMNIELVACG-EYHTCAVTLSGDLY 386 (893)
Q Consensus 313 ~V~~Ia~G~~hs~~Lt~dG~Vy~wG~N~~GqLG~g~~~~~~~P~~V~-----~l~~~~I~~Va~G-~~hs~aLT~dG~Vy 386 (893)
.+..+.|-+.+.++||.+|.+|+|--...-.+ +... ...|.+-. ......|+.+... ...-++...+|+.|
T Consensus 14 ~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~-~~~~--Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y 90 (219)
T PF07569_consen 14 PVSFLECNGSYLLAITSSGLLYVWNLKKGKAV-LPPV--SIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSY 90 (219)
T ss_pred ceEEEEeCCCEEEEEeCCCeEEEEECCCCeec-cCCc--cHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEE
Confidence 68889999999999999999999975442211 1110 01111100 0123456555444 33445556778888
Q ss_pred EcCCC
Q 002677 387 TWGDG 391 (893)
Q Consensus 387 ~wG~n 391 (893)
+|-.+
T Consensus 91 ~y~~~ 95 (219)
T PF07569_consen 91 SYSPD 95 (219)
T ss_pred Eeccc
Confidence 88544
No 107
>cd01230 PH_EFA6 EFA6 Pleckstrin Homology (PH) domain. EFA6 Pleckstrin Homology (PH) domain. EFA6 is an guanine nucleotide exchange factor for ARF6, which is involved in membrane recycling. It consists of a SEC7 domain followed by a PH domain. The EFA6 PH domain regulates its association with the plasma membrane. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=60.42 E-value=74 Score=30.24 Aligned_cols=39 Identities=18% Similarity=0.316 Sum_probs=31.9
Q ss_pred CCCCCEEEEEECC-CceeEEeCCHHHHHHHHHHHHHHHHc
Q 002677 93 EKEYQSFSLIYND-RSLDLICKDKDEAEVWFSGLKALISR 131 (893)
Q Consensus 93 ~~~~~~FSiiy~~-rtLDLva~~~~e~~~Wv~gL~~Li~~ 131 (893)
.+-..-|.|...+ +..=|-|.+.+|++.||..|+...+.
T Consensus 74 ~Kr~~VF~L~~~~g~~~lfqA~~~ee~~~Wi~~I~~~~~~ 113 (117)
T cd01230 74 SKKPHVFRLRTADWREFLFQTSSLKELQSWIERINVVAAA 113 (117)
T ss_pred cCCCcEEEEEcCCCCEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 3445678888865 88899999999999999999987653
No 108
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=59.92 E-value=3.6e+02 Score=31.98 Aligned_cols=89 Identities=18% Similarity=0.252 Sum_probs=48.7
Q ss_pred EEEEEecCCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCccccEEecccCCCcEEEEEeCCceE-EEEEcCCCEEEcCCCC
Q 002677 314 VQNIACGGRHAALVNKQGEVFSWGEESGGRLGHGVDSDVLHPKLIDALSNMNIELVACGEYHT-CAVTLSGDLYTWGDGT 392 (893)
Q Consensus 314 V~~Ia~G~~hs~~Lt~dG~Vy~wG~N~~GqLG~g~~~~~~~P~~V~~l~~~~I~~Va~G~~hs-~aLT~dG~Vy~wG~n~ 392 (893)
=.-|.||..|.++.+..|..+.=-. ..++..+...|..|..+++-- +-=+.+|.++.|+.+.
T Consensus 214 nliit~Gk~H~~Fw~~~~~~l~k~~-----------------~~fek~ekk~Vl~v~F~engdviTgDS~G~i~Iw~~~~ 276 (626)
T KOG2106|consen 214 NLIITCGKGHLYFWTLRGGSLVKRQ-----------------GIFEKREKKFVLCVTFLENGDVITGDSGGNILIWSKGT 276 (626)
T ss_pred cEEEEeCCceEEEEEccCCceEEEe-----------------eccccccceEEEEEEEcCCCCEEeecCCceEEEEeCCC
Confidence 3457899999988887775554211 111222222444555444332 3334678999998763
Q ss_pred CCCCccCCCCCcceeeeeeecCCCCCceEEEEeeCCCeEEEEecCCeEEE
Q 002677 393 YNFGLLGHGNEVSHWVPKRVNGPLEGIHVSSISCGPWHTAVVTSAGQLFT 442 (893)
Q Consensus 393 ~~~GqLG~g~~~~~~~P~~v~~~l~~~~I~~Ia~G~~hs~aLt~~G~Vy~ 442 (893)
+ .+-+ .+. +.-|.-+++.+..+|.|.+
T Consensus 277 ~-------------~~~k---------~~~-aH~ggv~~L~~lr~GtllS 303 (626)
T KOG2106|consen 277 N-------------RISK---------QVH-AHDGGVFSLCMLRDGTLLS 303 (626)
T ss_pred c-------------eEEe---------Eee-ecCCceEEEEEecCccEee
Confidence 2 0001 122 4446666777777776666
No 109
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=58.83 E-value=1e+02 Score=37.52 Aligned_cols=56 Identities=16% Similarity=0.243 Sum_probs=29.5
Q ss_pred CCcEEEEeCCCCCCcCCCCCCceeecEEeeccCCCceeeeecCCcEEEEEecCCcEEEEcC
Q 002677 501 SGKLFTWGDGDKGRLGHGDKEAKLVPTCVAALVEPNFCRVACGHSLTVALTTSGHVYTMGS 561 (893)
Q Consensus 501 ~G~ly~wG~n~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Ia~G~~htvaLt~dG~Vy~wG~ 561 (893)
++.||+.|-.+. +... .......|..-.- ..+........+.-+..-+|++|+.|-
T Consensus 475 ~~~iYvvGG~~~-~~~~-~~VE~ydp~~~~W---~~v~~m~~~rs~~g~~~~~~~ly~vGG 530 (571)
T KOG4441|consen 475 NGKIYVVGGFDG-TSAL-SSVERYDPETNQW---TMVAPMTSPRSAVGVVVLGGKLYAVGG 530 (571)
T ss_pred CCEEEEECCccC-CCcc-ceEEEEcCCCCce---eEcccCccccccccEEEECCEEEEEec
Confidence 899999996442 1111 1111111211100 112234456666667777899999995
No 110
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.68 E-value=0.54 Score=52.41 Aligned_cols=63 Identities=25% Similarity=0.591 Sum_probs=50.3
Q ss_pred eeccCccccccccccCCCCccccccccccc--cCceEeecCCCCcccccccCCCCCCCcccccchhhhhc
Q 002677 658 KWVSGVDQSMCSGCRLPFNNFKRKRHNCYN--CGLVFCHSCSSKKSLKASMAPNPNKPYRVCDNCFNKLR 725 (893)
Q Consensus 658 kwv~~~d~s~Cs~C~~~F~~f~rkrhhC~~--CG~v~C~~Cs~~~~~~~~~~~~~~~~~RVC~~C~~~l~ 725 (893)
.|....+...|..|.-.|..++.. .+|.. |+.+||..|+.- .+|.+.. ..|..||.-|...+.
T Consensus 461 e~ql~~~ve~c~~~~aS~~slk~e-~erl~qq~eqi~~~~~~Ka--tvp~l~~--e~~akv~rlq~eL~~ 525 (542)
T KOG0993|consen 461 EWQLDDDVEQCSNCDASFASLKVE-PERLHQQCEQIFCMNCLKA--TVPSLPN--ERPAKVCRLQHELLN 525 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHhHHHh--hcccccc--cchHHHHHHHHHHhh
Confidence 488888999999999999866654 55665 999999999854 4566654 689999999988764
No 111
>cd01221 PH_ephexin Ephexin Pleckstrin homology (PH) domain. Ephexin Pleckstrin homology (PH) domain. Ephexin contains a RhoGEF (DH) followed by a PH domain and an SH3 domain. The ephexin PH domain is believed to act with the DH domain in mediating protein-protein interactions with the Eph receptor. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=58.61 E-value=50 Score=31.80 Aligned_cols=32 Identities=28% Similarity=0.391 Sum_probs=26.2
Q ss_pred CCCEEEEEEC----C--CceeEEeCCHHHHHHHHHHHH
Q 002677 95 EYQSFSLIYN----D--RSLDLICKDKDEAEVWFSGLK 126 (893)
Q Consensus 95 ~~~~FSiiy~----~--rtLDLva~~~~e~~~Wv~gL~ 126 (893)
....|.|..- + +.|-|.|++++|.+.|+.+|.
T Consensus 82 ~~~~F~ltLl~N~~gk~~el~L~a~S~sdr~rWi~Al~ 119 (125)
T cd01221 82 RPNLFLLTLLRNADDKQAELLLSADSQSDRERWLSALA 119 (125)
T ss_pred CCceEEEEeeccCCCCEEEEEEECCCHHHHHHHHHhcC
Confidence 4578988861 2 579999999999999999874
No 112
>KOG4424 consensus Predicted Rho/Rac guanine nucleotide exchange factor/faciogenital dysplasia protein 3 [Signal transduction mechanisms]
Probab=57.23 E-value=19 Score=42.58 Aligned_cols=104 Identities=18% Similarity=0.256 Sum_probs=62.8
Q ss_pred HHHhcCCeEEEEec-CCCceEEEEEEeCCCCEEEEecCCceeeEEcccccceeeccCchhhhcC-CCCCCCCCEEEEEEC
Q 002677 27 TALKKGACLLKYGR-RGKPKFCPFRLSNDESVLIWFSGKEEKHLKLSHVSRIISGQRTPIFQRY-PRPEKEYQSFSLIYN 104 (893)
Q Consensus 27 ~~L~~G~~l~K~~~-~~~p~~r~f~l~~d~~~l~W~~~~~~~~i~l~~I~eIr~G~~t~~f~~~-~~~~~~~~~FSiiy~ 104 (893)
..|++|. ++|+.. ++.+..|++.|=.|. +.+...+. .+.. +.-++|.--........ .....-.+.|-+-..
T Consensus 271 eLiKEG~-l~Kis~k~~~~qeRylfLFNd~--~lyc~~r~--~~~~-~k~~~r~~~s~~~~~v~~~~~~~~~~tF~~~G~ 344 (623)
T KOG4424|consen 271 ELIKEGQ-LQKISAKNGTTQERYLFLFNDI--LLYCKPRK--RLPG-SKYEVRARCSISHMQVQEDDNEELPHTFILTGK 344 (623)
T ss_pred HHhhccc-eeeeeccCCCcceeEEEEehhH--HHhhhhhh--hccc-ceeccceeeccCcchhcccccccCCceEEEecc
Confidence 4456664 567754 499999999998873 22322111 1111 11122211111111111 111333577766666
Q ss_pred CCceeEEeCCHHHHHHHHHHHHHHHHcccccc
Q 002677 105 DRSLDLICKDKDEAEVWFSGLKALISRSHHRK 136 (893)
Q Consensus 105 ~rtLDLva~~~~e~~~Wv~gL~~Li~~~~~~~ 136 (893)
+|+|+|-|.|.++-+.||..++..|..++..+
T Consensus 345 ~r~vel~a~t~~ek~eWv~~I~~~Id~~kq~~ 376 (623)
T KOG4424|consen 345 KRGVELQARTEQEKKEWVQAIQDAIDKHKQCR 376 (623)
T ss_pred cceEEeecCchhhHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999998887654
No 113
>cd01263 PH_anillin Anillin Pleckstrin homology (PH) domain. Anillin Pleckstrin homology (PH) domain. Anillin is an actin binding protein involved in cytokinesis. It has a C-terminal PH domain, which has been shown to be necessary, but not sufficient for targetting of anillin to ectopic septin containing foci . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=56.60 E-value=68 Score=30.75 Aligned_cols=17 Identities=35% Similarity=0.640 Sum_probs=15.2
Q ss_pred EEeCCHHHHHHHHHHHH
Q 002677 110 LICKDKDEAEVWFSGLK 126 (893)
Q Consensus 110 Lva~~~~e~~~Wv~gL~ 126 (893)
|.|++++|++.|+..|+
T Consensus 104 lsaDt~eer~~W~~ain 120 (122)
T cd01263 104 LSADTKEERQTWLSLLN 120 (122)
T ss_pred EecCCHHHHHHHHHHHh
Confidence 55899999999999986
No 114
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=54.60 E-value=5.2e+02 Score=32.22 Aligned_cols=120 Identities=12% Similarity=0.104 Sum_probs=67.6
Q ss_pred EEEEEecCCe--EEEEEcCCcEEEEeCCCCCCcCCCCCCC-ccccEEecccCCCcEEEEEeCCceEEEEE--cCCCEEEc
Q 002677 314 VQNIACGGRH--AALVNKQGEVFSWGEESGGRLGHGVDSD-VLHPKLIDALSNMNIELVACGEYHTCAVT--LSGDLYTW 388 (893)
Q Consensus 314 V~~Ia~G~~h--s~~Lt~dG~Vy~wG~N~~GqLG~g~~~~-~~~P~~V~~l~~~~I~~Va~G~~hs~aLT--~dG~Vy~w 388 (893)
|.+++.|..- ++.+...|+=.++|...-|||+.=.-.. ....++-..+ ..+..++-..+-.++.| +||+|-.|
T Consensus 300 ih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~--~~i~~l~YSpDgq~iaTG~eDgKVKvW 377 (893)
T KOG0291|consen 300 IHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHS--DRITSLAYSPDGQLIATGAEDGKVKVW 377 (893)
T ss_pred EEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccc--cceeeEEECCCCcEEEeccCCCcEEEE
Confidence 5555666443 4556666887788877777776432111 1111111111 14555555555444444 68899888
Q ss_pred CCCCCCCCccCCCCCcceeeeeeecCCCCCceEEEEeeCCCeEEEEecCCeEEEeecCCC
Q 002677 389 GDGTYNFGLLGHGNEVSHWVPKRVNGPLEGIHVSSISCGPWHTAVVTSAGQLFTFGDGTF 448 (893)
Q Consensus 389 G~n~~~~GqLG~g~~~~~~~P~~v~~~l~~~~I~~Ia~G~~hs~aLt~~G~Vy~wG~n~~ 448 (893)
-... |.+ .......-.++..++++.-.+..+-..-||.|-+|--..|
T Consensus 378 n~~S---gfC----------~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRY 424 (893)
T KOG0291|consen 378 NTQS---GFC----------FVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRY 424 (893)
T ss_pred eccC---ceE----------EEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeeccc
Confidence 5541 111 1112223345567777777777777788999999976554
No 115
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=54.59 E-value=2.3e+02 Score=31.61 Aligned_cols=16 Identities=19% Similarity=0.308 Sum_probs=11.8
Q ss_pred EEEEEecCCcEEEEcC
Q 002677 546 LTVALTTSGHVYTMGS 561 (893)
Q Consensus 546 htvaLt~dG~Vy~wG~ 561 (893)
+..+..-+|+||++|-
T Consensus 314 ~~~~~~~~~~iyv~GG 329 (346)
T TIGR03547 314 YGVSVSWNNGVLLIGG 329 (346)
T ss_pred eeEEEEcCCEEEEEec
Confidence 3445667899999994
No 116
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=54.20 E-value=1.5e+02 Score=31.98 Aligned_cols=93 Identities=20% Similarity=0.240 Sum_probs=48.0
Q ss_pred ccccEEecccCCCcEEE-EEeCCceEEEE-EcCCCEEEcCCCCCCCCccCCCCCcceeeeeeecCCCCCceEEEEeeC-C
Q 002677 352 VLHPKLIDALSNMNIEL-VACGEYHTCAV-TLSGDLYTWGDGTYNFGLLGHGNEVSHWVPKRVNGPLEGIHVSSISCG-P 428 (893)
Q Consensus 352 ~~~P~~V~~l~~~~I~~-Va~G~~hs~aL-T~dG~Vy~wG~n~~~~GqLG~g~~~~~~~P~~v~~~l~~~~I~~Ia~G-~ 428 (893)
...|..+..-.+ .|+. +-|-..|+++- ++++.|-.|-..+- . .+.....+.+|.+.-.. .
T Consensus 133 ~App~E~~ghtg-~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTg--------t--------~v~sL~~~s~VtSlEvs~d 195 (334)
T KOG0278|consen 133 KAPPKEISGHTG-GIRTVLWCHEDKCILSSADDKTVRLWDHRTG--------T--------EVQSLEFNSPVTSLEVSQD 195 (334)
T ss_pred CCCchhhcCCCC-cceeEEEeccCceEEeeccCCceEEEEeccC--------c--------EEEEEecCCCCcceeeccC
Confidence 345555554333 3444 46778887766 78899999964421 1 11110111123222211 2
Q ss_pred CeEEEEecCCeEEEeecCCCcccCCCCCcccccceeee
Q 002677 429 WHTAVVTSAGQLFTFGDGTFGVLGHGDRKSVSIPREVE 466 (893)
Q Consensus 429 ~hs~aLt~~G~Vy~wG~n~~GQLG~g~~~~~~~P~~V~ 466 (893)
.+.+.+...+.|--|-.+.++.| ..+..|..|+
T Consensus 196 G~ilTia~gssV~Fwdaksf~~l-----Ks~k~P~nV~ 228 (334)
T KOG0278|consen 196 GRILTIAYGSSVKFWDAKSFGLL-----KSYKMPCNVE 228 (334)
T ss_pred CCEEEEecCceeEEeccccccce-----eeccCccccc
Confidence 34444455567888888887765 3344555554
No 117
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=52.78 E-value=3.1e+02 Score=31.20 Aligned_cols=18 Identities=28% Similarity=0.327 Sum_probs=13.2
Q ss_pred CeEEEEecCCeEEEeecC
Q 002677 429 WHTAVVTSAGQLFTFGDG 446 (893)
Q Consensus 429 ~hs~aLt~~G~Vy~wG~n 446 (893)
.|+++...+|+||.+|-.
T Consensus 131 ~~~~~~~~~~~IYv~GG~ 148 (376)
T PRK14131 131 GHVAVSLHNGKAYITGGV 148 (376)
T ss_pred ceEEEEeeCCEEEEECCC
Confidence 466665468999999953
No 118
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=52.44 E-value=4e+02 Score=30.31 Aligned_cols=18 Identities=22% Similarity=0.230 Sum_probs=13.3
Q ss_pred ceEEEEEcCCCEEEcCCC
Q 002677 374 YHTCAVTLSGDLYTWGDG 391 (893)
Q Consensus 374 ~hs~aLT~dG~Vy~wG~n 391 (893)
.|++++..+|+||.+|-.
T Consensus 131 ~~~~~~~~~~~IYv~GG~ 148 (376)
T PRK14131 131 GHVAVSLHNGKAYITGGV 148 (376)
T ss_pred ceEEEEeeCCEEEEECCC
Confidence 466555468999999964
No 119
>PF14593 PH_3: PH domain; PDB: 1W1H_D 1W1D_A 1W1G_A 2VKI_A.
Probab=51.88 E-value=1.3e+02 Score=28.11 Aligned_cols=72 Identities=15% Similarity=0.243 Sum_probs=46.1
Q ss_pred ceEEEEEEeCCCCEEEEecCC---ceeeEEcccccceeeccCchhhhcCCCCCCCCCEEEEEECCCceeEEeCCHHHHHH
Q 002677 44 PKFCPFRLSNDESVLIWFSGK---EEKHLKLSHVSRIISGQRTPIFQRYPRPEKEYQSFSLIYNDRSLDLICKDKDEAEV 120 (893)
Q Consensus 44 p~~r~f~l~~d~~~l~W~~~~---~~~~i~l~~I~eIr~G~~t~~f~~~~~~~~~~~~FSiiy~~rtLDLva~~~~e~~~ 120 (893)
.+.|.|-|... -+|.+.... .+..|+++.-..|.. .....|-|...+|+-.|... ...|..
T Consensus 27 ~kkR~liLTd~-PrL~Yvdp~~~~~KGeI~~~~~l~v~~--------------k~~~~F~I~tp~RtY~l~d~-~~~A~~ 90 (104)
T PF14593_consen 27 AKKRQLILTDG-PRLFYVDPKKMVLKGEIPWSKELSVEV--------------KSFKTFFIHTPKRTYYLEDP-EGNAQQ 90 (104)
T ss_dssp EEEEEEEEETT-TEEEEEETTTTEEEEEE--STT-EEEE--------------CSSSEEEEEETTEEEEEE-T-TS-HHH
T ss_pred EEEEEEEEccC-CEEEEEECCCCeECcEEecCCceEEEE--------------ccCCEEEEECCCcEEEEECC-CCCHHH
Confidence 56777777655 677775543 355687763322222 22457999999999998875 455899
Q ss_pred HHHHHHHHHHc
Q 002677 121 WFSGLKALISR 131 (893)
Q Consensus 121 Wv~gL~~Li~~ 131 (893)
|+.+++.++.+
T Consensus 91 W~~~I~~~~~~ 101 (104)
T PF14593_consen 91 WVEAIEEVKKQ 101 (104)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988764
No 120
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=50.51 E-value=4.6e+02 Score=30.67 Aligned_cols=66 Identities=24% Similarity=0.360 Sum_probs=32.6
Q ss_pred EEEEEeCC--ceEEEEEcCCCEEEcCCCCCCCCccCCCCCcceeeeeeecCCCCCceEEEEeeCCCeEEEEecCCeEEEe
Q 002677 366 IELVACGE--YHTCAVTLSGDLYTWGDGTYNFGLLGHGNEVSHWVPKRVNGPLEGIHVSSISCGPWHTAVVTSAGQLFTF 443 (893)
Q Consensus 366 I~~Va~G~--~hs~aLT~dG~Vy~wG~n~~~~GqLG~g~~~~~~~P~~v~~~l~~~~I~~Ia~G~~hs~aLt~~G~Vy~w 443 (893)
|..++... ++.++=|..|+||.|--+. |.|=.-- ..+ ........++--..|.+--..||.|+.|
T Consensus 84 v~al~s~n~G~~l~ag~i~g~lYlWelss---G~LL~v~-~aH---------YQ~ITcL~fs~dgs~iiTgskDg~V~vW 150 (476)
T KOG0646|consen 84 VHALASSNLGYFLLAGTISGNLYLWELSS---GILLNVL-SAH---------YQSITCLKFSDDGSHIITGSKDGAVLVW 150 (476)
T ss_pred eeeeecCCCceEEEeecccCcEEEEEecc---ccHHHHH-Hhh---------ccceeEEEEeCCCcEEEecCCCccEEEE
Confidence 44444432 3334445899999997652 2221100 011 1122233333333444444578999999
Q ss_pred e
Q 002677 444 G 444 (893)
Q Consensus 444 G 444 (893)
=
T Consensus 151 ~ 151 (476)
T KOG0646|consen 151 L 151 (476)
T ss_pred E
Confidence 5
No 121
>cd01243 PH_MRCK MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK consists of a serine/threonine kinase domain, a cysteine rich (C1) region, a PH domain and a p21 binding motif. It has been shown to promote cytoskeletal reorganization, which affects many biological processes. The MRCK PH domain is responsible for its targeting to cell to cell junctions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=49.67 E-value=1.3e+02 Score=28.68 Aligned_cols=24 Identities=21% Similarity=0.390 Sum_probs=22.3
Q ss_pred CceeEEeCCHHHHHHHHHHHHHHH
Q 002677 106 RSLDLICKDKDEAEVWFSGLKALI 129 (893)
Q Consensus 106 rtLDLva~~~~e~~~Wv~gL~~Li 129 (893)
.+|-|.|++..|-+.||..|+-|-
T Consensus 96 ~~~~~lA~s~~eK~kWV~aL~~l~ 119 (122)
T cd01243 96 CSTLMLADTEEEKSKWVGALSELH 119 (122)
T ss_pred cEEEEEeCCchHHHHHHHHHHHHH
Confidence 689999999999999999998874
No 122
>PHA02790 Kelch-like protein; Provisional
Probab=49.05 E-value=1.6e+02 Score=35.02 Aligned_cols=14 Identities=29% Similarity=0.385 Sum_probs=10.5
Q ss_pred EEEcCCCEEEcCCC
Q 002677 378 AVTLSGDLYTWGDG 391 (893)
Q Consensus 378 aLT~dG~Vy~wG~n 391 (893)
++.-+|+||..|-.
T Consensus 314 ~v~~~~~iYviGG~ 327 (480)
T PHA02790 314 GVPANNKLYVVGGL 327 (480)
T ss_pred EEEECCEEEEECCc
Confidence 34568999999854
No 123
>PF05191 ADK_lid: Adenylate kinase, active site lid; InterPro: IPR007862 Adenylate kinases (ADK; 2.7.4.3 from EC) are phosphotransferases that catalyse the Mg-dependent reversible conversion of ATP and AMP to two molecules of ADP, an essential reaction for many processes in living cells. In large variants of adenylate kinase, the AMP and ATP substrates are buried in a domain that undergoes conformational changes from an open to a closed state when bound to substrate; the ligand is then contained within a highly specific environment required for catalysis. Adenylate kinase is a 3-domain protein consisting of a large central CORE domain flanked by a LID domain on one side and the AMP-binding NMPbind domain on the other []. The LID domain binds ATP and covers the phosphates at the active site. The substrates first bind the CORE domain, followed by closure of the active site by the LID and NMPbind domains. Comparisons of adenylate kinases have revealed a particular divergence in the active site lid. In some organisms, particularly the Gram-positive bacteria, residues in the lid domain have been mutated to cysteines and these cysteine residues (two CX(n)C motifs) are responsible for the binding of a zinc ion. The bound zinc ion in the lid domain is clearly structurally homologous to Zinc-finger domains. However, it is unclear whether the adenylate kinase lid is a novel zinc-finger DNA/RNA binding domain, or that the lid bound zinc serves a purely structural function [].; GO: 0004017 adenylate kinase activity; PDB: 3BE4_A 2OSB_B 2ORI_A 2EU8_A 3DL0_A 1P3J_A 2QAJ_A 2OO7_A 2P3S_A 3DKV_A ....
Probab=46.42 E-value=11 Score=27.95 Aligned_cols=34 Identities=35% Similarity=0.667 Sum_probs=22.3
Q ss_pred ccccccCceEeecCCCCcccccccCCCCCCCcccccchhhhhcccc
Q 002677 683 HNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVCDNCFNKLRKTF 728 (893)
Q Consensus 683 hhC~~CG~v~C~~Cs~~~~~~~~~~~~~~~~~RVC~~C~~~l~~~~ 728 (893)
.-|..||.++- +.+.+.+..-+||.|-..|.+..
T Consensus 2 r~C~~Cg~~Yh------------~~~~pP~~~~~Cd~cg~~L~qR~ 35 (36)
T PF05191_consen 2 RICPKCGRIYH------------IEFNPPKVEGVCDNCGGELVQRK 35 (36)
T ss_dssp EEETTTTEEEE------------TTTB--SSTTBCTTTTEBEBEEG
T ss_pred cCcCCCCCccc------------cccCCCCCCCccCCCCCeeEeCC
Confidence 34777777764 22233578899999998887653
No 124
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=45.60 E-value=5.4e+02 Score=29.85 Aligned_cols=69 Identities=12% Similarity=0.109 Sum_probs=40.9
Q ss_pred CEEEEEe-cCCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCccccEEec--ccCCCcEEEEEeCCceEEEEEcCCCEEEcC
Q 002677 313 DVQNIAC-GGRHAALVNKQGEVFSWGEESGGRLGHGVDSDVLHPKLID--ALSNMNIELVACGEYHTCAVTLSGDLYTWG 389 (893)
Q Consensus 313 ~V~~Ia~-G~~hs~~Lt~dG~Vy~wG~N~~GqLG~g~~~~~~~P~~V~--~l~~~~I~~Va~G~~hs~aLT~dG~Vy~wG 389 (893)
+|+.+.- -..+-++|+++|.|+..- -.|.. ....+..+. .....+|-.+..+.+-.++||.++++|.--
T Consensus 82 ~iv~~~wt~~e~LvvV~~dG~v~vy~--~~G~~------~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt~~~~~~~v~ 153 (410)
T PF04841_consen 82 RIVGMGWTDDEELVVVQSDGTVRVYD--LFGEF------QFSLGEEIEEEKVLECRIFAIWFYKNGIVVLTGNNRFYVVN 153 (410)
T ss_pred CEEEEEECCCCeEEEEEcCCEEEEEe--CCCce------eechhhhccccCcccccccccccCCCCEEEECCCCeEEEEe
Confidence 5666654 356788999999988863 22332 111122221 111223444566666688999999999883
No 125
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.12 E-value=18 Score=30.73 Aligned_cols=25 Identities=40% Similarity=0.464 Sum_probs=20.6
Q ss_pred chhhHhhhHHHHHHHHHHHHhhhhc
Q 002677 868 VDDAKRTNDSLSQEVIKLRAQVFAF 892 (893)
Q Consensus 868 ~~~~~~~~~~~~~~~~~~~~~~~~~ 892 (893)
+++||..|..|.||++.++.+.+.|
T Consensus 27 ieELKEknn~l~~e~q~~q~~reaL 51 (79)
T COG3074 27 IEELKEKNNSLSQEVQNAQHQREAL 51 (79)
T ss_pred HHHHHHHhhHhHHHHHHHHHHHHHH
Confidence 6889999999999999887766654
No 126
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=44.36 E-value=78 Score=33.45 Aligned_cols=81 Identities=16% Similarity=0.263 Sum_probs=47.0
Q ss_pred CCceEEEEecCCeeEEEecCCeEEEecCCCCCCCCCC-CCCC----------CcccEEec---ccCCCcEEEEccCCCcc
Q 002677 586 KSFVEEIACGSYHVAVLTSKTEVYTWGKGANGRLGHG-DTDD----------RNSPSLVE---ALKDKQVKSIACGTNFT 651 (893)
Q Consensus 586 ~~~V~~Is~G~~Ht~aLt~~G~Vy~WG~N~~GQLG~g-~~~~----------~~~P~~V~---~l~~~~V~~IacG~~hT 651 (893)
+..+..+.|-..+.++||++|.+|+|=-...-..-.. ...+ ...|.... .-.+..|+.++.|..++
T Consensus 12 gs~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~ 91 (219)
T PF07569_consen 12 GSPVSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYS 91 (219)
T ss_pred CCceEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEE
Confidence 3568889999999999999999999964332111111 0000 11111110 12344566666666666
Q ss_pred ceeeeeeeccCcccc
Q 002677 652 AAICLHKWVSGVDQS 666 (893)
Q Consensus 652 ~al~~~kwv~~~d~s 666 (893)
.-.....|+...|..
T Consensus 92 y~~~L~~W~~vsd~w 106 (219)
T PF07569_consen 92 YSPDLGCWIRVSDSW 106 (219)
T ss_pred eccccceeEEeccch
Confidence 666666777766664
No 127
>cd01249 PH_oligophrenin Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin is composed of a PH domain, a rhoGAP domain and a proline rich region. Closely related proteins have a C-terminal SH3 domain. PH domains a share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=44.28 E-value=39 Score=31.44 Aligned_cols=36 Identities=6% Similarity=0.317 Sum_probs=29.9
Q ss_pred CCCCCCCEEEEEECCC--ceeEEeCCHHHHHHHHHHHH
Q 002677 91 RPEKEYQSFSLIYNDR--SLDLICKDKDEAEVWFSGLK 126 (893)
Q Consensus 91 ~~~~~~~~FSiiy~~r--tLDLva~~~~e~~~Wv~gL~ 126 (893)
+.++--.||-|+..++ ++=|.|.++++.+.|+.++.
T Consensus 65 ~~~dRRFCFei~~~~~~~~~~lQA~Se~~~~~Wi~A~d 102 (104)
T cd01249 65 ESIDKRFCFDVEVEEKPGVITMQALSEKDRRLWIEAMD 102 (104)
T ss_pred CCccceeeEeeeecCCCCeEEEEecCHHHHHHHHHhhc
Confidence 3345567999999776 89999999999999998763
No 128
>PHA02713 hypothetical protein; Provisional
Probab=42.51 E-value=4.1e+02 Score=32.19 Aligned_cols=10 Identities=10% Similarity=0.438 Sum_probs=8.8
Q ss_pred CCcEEEEeCC
Q 002677 501 SGKLFTWGDG 510 (893)
Q Consensus 501 ~G~ly~wG~n 510 (893)
+|+||++|-.
T Consensus 351 ~g~IYviGG~ 360 (557)
T PHA02713 351 DDTIYAIGGQ 360 (557)
T ss_pred CCEEEEECCc
Confidence 8999999964
No 129
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=42.02 E-value=18 Score=33.97 Aligned_cols=34 Identities=35% Similarity=0.827 Sum_probs=26.2
Q ss_pred cccccccccCCCCcc---------ccccccccccCceEeecCC
Q 002677 664 DQSMCSGCRLPFNNF---------KRKRHNCYNCGLVFCHSCS 697 (893)
Q Consensus 664 d~s~Cs~C~~~F~~f---------~rkrhhC~~CG~v~C~~Cs 697 (893)
....|.+|..+|..- ...|.-|..|...||.+|=
T Consensus 54 ~~~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD 96 (112)
T TIGR00622 54 GSRFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCD 96 (112)
T ss_pred CCCcccCcCCCCCCcccccccccccccceeCCCCCCccccccc
Confidence 345699999999732 2346779999999999985
No 130
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=40.79 E-value=6.4e+02 Score=29.27 Aligned_cols=25 Identities=16% Similarity=0.251 Sum_probs=19.1
Q ss_pred CceEEEEec--CCeeEEEecCCeEEEe
Q 002677 587 SFVEEIACG--SYHVAVLTSKTEVYTW 611 (893)
Q Consensus 587 ~~V~~Is~G--~~Ht~aLt~~G~Vy~W 611 (893)
..+.+|+.. +.|.++++.+|.+|..
T Consensus 217 ~~i~~iavSpng~~iAl~t~~g~l~v~ 243 (410)
T PF04841_consen 217 GPIIKIAVSPNGKFIALFTDSGNLWVV 243 (410)
T ss_pred CCeEEEEECCCCCEEEEEECCCCEEEE
Confidence 457777766 4578888999999886
No 131
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=40.60 E-value=3.1e+02 Score=29.54 Aligned_cols=46 Identities=13% Similarity=0.075 Sum_probs=27.3
Q ss_pred eEEEEeeCCCeEEEEecCCeEEEeecCCCcc-cCCCCCcccccceeee
Q 002677 420 HVSSISCGPWHTAVVTSAGQLFTFGDGTFGV-LGHGDRKSVSIPREVE 466 (893)
Q Consensus 420 ~I~~Ia~G~~hs~aLt~~G~Vy~wG~n~~GQ-LG~g~~~~~~~P~~V~ 466 (893)
+|-.++.-..|.+ ..-+|.||+|-.|.+-. ++....-....|..+.
T Consensus 64 piy~~~f~d~~Ll-s~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~ 110 (325)
T KOG0649|consen 64 PIYYLAFHDDFLL-SGGDGLVYGWEWNEEEESLATKRLWEVKIPMQVD 110 (325)
T ss_pred Ceeeeeeehhhee-eccCceEEEeeehhhhhhccchhhhhhcCccccC
Confidence 5666665555443 34569999999998765 4443333344454443
No 132
>PF15404 PH_4: Pleckstrin homology domain
Probab=39.27 E-value=2.2e+02 Score=29.41 Aligned_cols=18 Identities=11% Similarity=0.671 Sum_probs=15.7
Q ss_pred EEeCCHHHHHHHHHHHHH
Q 002677 110 LICKDKDEAEVWFSGLKA 127 (893)
Q Consensus 110 Lva~~~~e~~~Wv~gL~~ 127 (893)
+-|.+..|+++||..+..
T Consensus 166 F~ARSRqERD~WV~~I~~ 183 (185)
T PF15404_consen 166 FMARSRQERDLWVLAINT 183 (185)
T ss_pred EEeccHHHHHHHHHHHHh
Confidence 779999999999998753
No 133
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=38.22 E-value=8.6 Score=30.94 Aligned_cols=30 Identities=37% Similarity=0.915 Sum_probs=17.2
Q ss_pred cccccCCCCccc-----cccccccccCceEeecCC
Q 002677 668 CSGCRLPFNNFK-----RKRHNCYNCGLVFCHSCS 697 (893)
Q Consensus 668 Cs~C~~~F~~f~-----rkrhhC~~CG~v~C~~Cs 697 (893)
|-+|..+|.... ..+..|..|...||.+|=
T Consensus 2 CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD 36 (51)
T PF07975_consen 2 CFGCQKPFPDGPEKKADSSRYRCPKCKNHFCIDCD 36 (51)
T ss_dssp ETTTTEE-TTS-------EEE--TTTT--B-HHHH
T ss_pred CccCCCCCCCcccccccCCeEECCCCCCccccCcC
Confidence 678888887321 257899999999999883
No 134
>cd01224 PH_Collybistin Collybistin pleckstrin homology (PH) domain. Collybistin pleckstrin homology (PH) domain. Collybistin is GEF which induces submembrane clustering of the receptor-associated peripheral membrane protein gephyrin. It consists of an SH3 domain, followed by a RhoGEF(dbH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=38.06 E-value=1.6e+02 Score=27.70 Aligned_cols=84 Identities=12% Similarity=0.192 Sum_probs=51.4
Q ss_pred EEEEec-CCCceEEEEEEeCCCCEEEEecC---C-----ceeeEEcccc--cceeeccCchhhhcCCCCCCCCCEEEEEE
Q 002677 35 LLKYGR-RGKPKFCPFRLSNDESVLIWFSG---K-----EEKHLKLSHV--SRIISGQRTPIFQRYPRPEKEYQSFSLIY 103 (893)
Q Consensus 35 l~K~~~-~~~p~~r~f~l~~d~~~l~W~~~---~-----~~~~i~l~~I--~eIr~G~~t~~f~~~~~~~~~~~~FSiiy 103 (893)
|.+++. +|+.+.|+|.|=.. +|+.... + =+..|.++.+ ..+.-|. .+. ....-..+|-|+.
T Consensus 8 l~~~s~~~g~~q~R~~FLFD~--~LI~CKkd~~r~~~~~yKgri~l~~~~I~d~~Dg~---~~~---~~~~~knafkl~~ 79 (109)
T cd01224 8 ATRQKQNKGWNSSRVLFLFDH--QMVLCKKDLIRRDHLYYKGRIDLDRCEVVNIRDGK---MFS---SGHTIKNSLKIYS 79 (109)
T ss_pred EEEEecccCCcccEEEEEecc--eEEEEecccccCCcEEEEEEEEcccEEEEECCCCc---ccc---CCceeEEEEEEEE
Confidence 445654 58899999988654 4444331 1 1334555432 2333332 110 0112346788888
Q ss_pred CC--CceeEEeCCHHHHHHHHHHHH
Q 002677 104 ND--RSLDLICKDKDEAEVWFSGLK 126 (893)
Q Consensus 104 ~~--rtLDLva~~~~e~~~Wv~gL~ 126 (893)
.+ +.+.|.|+++|+-+.|+.+|.
T Consensus 80 ~~~~~~~~f~~Kt~e~K~~Wm~a~~ 104 (109)
T cd01224 80 ESTDEWYLFSFKSAERKHRWLSAFA 104 (109)
T ss_pred cCCCeEEEEEECCHHHHHHHHHHHH
Confidence 55 689999999999999999874
No 135
>smart00706 TECPR Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal hypothetical proteins.
Probab=37.63 E-value=49 Score=23.91 Aligned_cols=24 Identities=25% Similarity=0.411 Sum_probs=21.4
Q ss_pred eEEEEeeCC-CeEEEEecCCeEEEe
Q 002677 420 HVSSISCGP-WHTAVVTSAGQLFTF 443 (893)
Q Consensus 420 ~I~~Ia~G~-~hs~aLt~~G~Vy~w 443 (893)
.+++|++|. ....+++.+|.||..
T Consensus 9 ~l~~isvg~~~~vW~V~~~g~i~~r 33 (35)
T smart00706 9 ELVQVSVGPSDTVWAVNSDGNIYRR 33 (35)
T ss_pred CEEEEEECCCCeEEEEcCCCCEEEE
Confidence 699999999 899999999999853
No 136
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=36.74 E-value=3.2e+02 Score=35.98 Aligned_cols=159 Identities=19% Similarity=0.148 Sum_probs=79.8
Q ss_pred EEEecCCeEEEeecCCCcccCCCCCcc--cccceeeeccCCCeEEEEEeCCceEEEEEEeeecCCCccccCCCcEEEEeC
Q 002677 432 AVVTSAGQLFTFGDGTFGVLGHGDRKS--VSIPREVESLKGLRTVRAACGVWHTAAVVEVMVGNSSSSNCSSGKLFTWGD 509 (893)
Q Consensus 432 ~aLt~~G~Vy~wG~n~~GQLG~g~~~~--~~~P~~V~~l~~~~I~~Va~G~~ht~alte~~~~~s~~~~~~~G~ly~wG~ 509 (893)
+-+|.|.+||.|-.+..+++-.-+... +..-..|..-+|+-+.. ..|.++|. ..-+++..|-
T Consensus 93 aWiTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~----IqhlLvva------------T~~ei~ilgV 156 (1311)
T KOG1900|consen 93 AWITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPE----IQHLLVVA------------TPVEIVILGV 156 (1311)
T ss_pred eEEEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhh----hheeEEec------------ccceEEEEEE
Confidence 457889999999988766654322211 11111111111211111 24777776 4677887774
Q ss_pred CCC-CCcCCCCCCceeecEEeeccCCCceeeeec-CCcEEEEE-ecCCcEEEEcCCCC-----CcCCCCCC---------
Q 002677 510 GDK-GRLGHGDKEAKLVPTCVAALVEPNFCRVAC-GHSLTVAL-TTSGHVYTMGSPVY-----GQLGNPQA--------- 572 (893)
Q Consensus 510 n~~-GQLG~g~~~~~~~P~~V~~l~~~~I~~Ia~-G~~htvaL-t~dG~Vy~wG~N~~-----GQLG~~~~--------- 572 (893)
-.. ...+.+..... -+|.. |-+-.++. |++|+||.-|.+.. .|.+.+-.
T Consensus 157 ~~~~~~~~~~~f~~~--------------~~i~~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kicl 222 (1311)
T KOG1900|consen 157 SFDEFTGELSIFNTS--------------FKISVDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICL 222 (1311)
T ss_pred EeccccCcccccccc--------------eeeecCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccC
Confidence 211 11111111111 22222 33333333 66777776665431 11121111
Q ss_pred -----CCCcCceeccc-cCCCceEEEEecCCee--EEEecCCeEEEecCCCCCCCC
Q 002677 573 -----DGKLPNRVEGK-LSKSFVEEIACGSYHV--AVLTSKTEVYTWGKGANGRLG 620 (893)
Q Consensus 573 -----~~~~P~~v~~~-l~~~~V~~Is~G~~Ht--~aLt~~G~Vy~WG~N~~GQLG 620 (893)
....|.....+ ...+.|.+|+.+.... .++++.|.|=+|=-+.+|+-+
T Consensus 223 t~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~~G~~~ 278 (1311)
T KOG1900|consen 223 TKSVLSSLVPSLLSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGGNGLGG 278 (1311)
T ss_pred chhHHHHhhhhhhcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccCCCccc
Confidence 11245533332 2356799999998775 566788888777665555544
No 137
>PRK00464 nrdR transcriptional regulator NrdR; Validated
Probab=36.59 E-value=19 Score=36.00 Aligned_cols=11 Identities=45% Similarity=1.162 Sum_probs=5.8
Q ss_pred cccccccCceE
Q 002677 682 RHNCYNCGLVF 692 (893)
Q Consensus 682 rhhC~~CG~v~ 692 (893)
+++|.+||.-|
T Consensus 28 ~~~c~~c~~~f 38 (154)
T PRK00464 28 RRECLACGKRF 38 (154)
T ss_pred eeeccccCCcc
Confidence 45565555444
No 138
>smart00706 TECPR Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal hypothetical proteins.
Probab=36.24 E-value=54 Score=23.65 Aligned_cols=24 Identities=25% Similarity=0.404 Sum_probs=21.6
Q ss_pred cEEEEEeCC-ceEEEEEcCCCEEEc
Q 002677 365 NIELVACGE-YHTCAVTLSGDLYTW 388 (893)
Q Consensus 365 ~I~~Va~G~-~hs~aLT~dG~Vy~w 388 (893)
.+++|++|. ....+|+.+|+||..
T Consensus 9 ~l~~isvg~~~~vW~V~~~g~i~~r 33 (35)
T smart00706 9 ELVQVSVGPSDTVWAVNSDGNIYRR 33 (35)
T ss_pred CEEEEEECCCCeEEEEcCCCCEEEE
Confidence 789999999 889999999999864
No 139
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.64 E-value=14 Score=35.44 Aligned_cols=53 Identities=34% Similarity=0.706 Sum_probs=37.9
Q ss_pred ccccccccccCC-CCccccccccccccCceEeecCCCCcccccccCCCCCCCcccccchhhh
Q 002677 663 VDQSMCSGCRLP-FNNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVCDNCFNK 723 (893)
Q Consensus 663 ~d~s~Cs~C~~~-F~~f~rkrhhC~~CG~v~C~~Cs~~~~~~~~~~~~~~~~~RVC~~C~~~ 723 (893)
.+...|..|... |. -... |.|..|-.-+|..|-.+-.+.. ++-.-||.-|...
T Consensus 63 ~ddatC~IC~KTKFA-DG~G-H~C~YCq~r~CARCGGrv~lrs------NKv~wvcnlc~k~ 116 (169)
T KOG3799|consen 63 GDDATCGICHKTKFA-DGCG-HNCSYCQTRFCARCGGRVSLRS------NKVMWVCNLCRKQ 116 (169)
T ss_pred CcCcchhhhhhcccc-cccC-cccchhhhhHHHhcCCeeeecc------CceEEeccCCcHH
Confidence 355567777764 54 4443 9999999999999987654332 5777899999653
No 140
>PF15135 UPF0515: Uncharacterised protein UPF0515
Probab=34.87 E-value=37 Score=36.10 Aligned_cols=46 Identities=26% Similarity=0.687 Sum_probs=31.6
Q ss_pred EEEccCCCccceeeeeee----ccCccccccccccCCCCc------cccccccccccCceEe
Q 002677 642 KSIACGTNFTAAICLHKW----VSGVDQSMCSGCRLPFNN------FKRKRHNCYNCGLVFC 693 (893)
Q Consensus 642 ~~IacG~~hT~al~~~kw----v~~~d~s~Cs~C~~~F~~------f~rkrhhC~~CG~v~C 693 (893)
.+++|.. |.+-| -.-++.+.|.+|+..|.. +.-...||.+|+..|=
T Consensus 111 rqFaC~~------Cd~~WwRrvp~rKeVSRCr~C~~rYDPVP~dkmwG~aef~C~~C~h~F~ 166 (278)
T PF15135_consen 111 RQFACSS------CDHMWWRRVPQRKEVSRCRKCRKRYDPVPCDKMWGIAEFHCPKCRHNFR 166 (278)
T ss_pred eeeeccc------cchHHHhccCcccccccccccccccCCCccccccceeeeecccccccch
Confidence 3456653 55444 344788999999998762 2334779999998874
No 141
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=34.77 E-value=68 Score=26.72 Aligned_cols=30 Identities=17% Similarity=0.213 Sum_probs=25.1
Q ss_pred CCCCcccchhhHhhhHHHHHHHHHHHHhhh
Q 002677 861 LTSPKIVVDDAKRTNDSLSQEVIKLRAQVF 890 (893)
Q Consensus 861 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 890 (893)
-..+...+++|...-.+|..||.++++++.
T Consensus 16 ~dLs~lSv~EL~~RIa~L~aEI~R~~~~~~ 45 (59)
T PF06698_consen 16 EDLSLLSVEELEERIALLEAEIARLEAAIA 45 (59)
T ss_pred CCchhcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335556689999999999999999999765
No 142
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=33.89 E-value=1.1e+03 Score=30.54 Aligned_cols=153 Identities=16% Similarity=0.097 Sum_probs=0.0
Q ss_pred eEEEEeeCCCe--EEEEecCCeEEEeecCCCccc-----------------CCCCCcccccceeeeccCCCeEEEEEeCC
Q 002677 420 HVSSISCGPWH--TAVVTSAGQLFTFGDGTFGVL-----------------GHGDRKSVSIPREVESLKGLRTVRAACGV 480 (893)
Q Consensus 420 ~I~~Ia~G~~h--s~aLt~~G~Vy~wG~n~~GQL-----------------G~g~~~~~~~P~~V~~l~~~~I~~Va~G~ 480 (893)
.|.+|+.+..+ .++++.+|.|+.|-.....-. ..........+..+..+....+.-+....
T Consensus 428 ~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (928)
T PF04762_consen 428 PVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSDSD 507 (928)
T ss_pred CcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEecC
Q ss_pred -ceEEEEEEeeecCCCccccCCCcEEEEeCCCCCCcCCCCCCceeecEEeeccCCCceeeeecCCcE-EEEEecCCcEEE
Q 002677 481 -WHTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDKEAKLVPTCVAALVEPNFCRVACGHSL-TVALTTSGHVYT 558 (893)
Q Consensus 481 -~ht~alte~~~~~s~~~~~~~G~ly~wG~n~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Ia~G~~h-tvaLt~dG~Vy~ 558 (893)
.++.+.. +...+.........+......-+....+...+ .++-+.+|++|
T Consensus 508 ~~~~~i~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~G~v~- 559 (928)
T PF04762_consen 508 SNQSKIVL---------------------------VDIDDSENSASVESSTEVDGVVLIISSSPDSGSLYIQTNDGKVF- 559 (928)
T ss_pred cccceEEE---------------------------EEeccCCCceeEEEEeccCceEEEEeeCCCCcEEEEEECCCEEE-
Q ss_pred EcCCCCCcCCCCCCCCCcCceeccccCCCceEEEEecCCe----eEEEecCCeEEE
Q 002677 559 MGSPVYGQLGNPQADGKLPNRVEGKLSKSFVEEIACGSYH----VAVLTSKTEVYT 610 (893)
Q Consensus 559 wG~N~~GQLG~~~~~~~~P~~v~~~l~~~~V~~Is~G~~H----t~aLt~~G~Vy~ 610 (893)
.+-.-+........|..... +.-+..+... .+.|+.+|++|+
T Consensus 560 ----~~~~~~~~~~~~~fp~~c~~------~~~~~~~~~~~~~~~~GLs~~~~Ly~ 605 (928)
T PF04762_consen 560 ----QLSSDGELSQIVKFPQPCPW------MEVCQINGSEDKRVLFGLSSNGRLYA 605 (928)
T ss_pred ----EeecCCCccccccCCCCCcE------EEEEEECCccceeEEEEECCCCEEEE
No 143
>PLN00188 enhanced disease resistance protein (EDR2); Provisional
Probab=32.85 E-value=1.2e+02 Score=37.44 Aligned_cols=95 Identities=16% Similarity=0.347 Sum_probs=56.2
Q ss_pred eEEEEecC--C--CceEEEEEEeCCCCEEEEecCCceeeEEcccccceeeccCchhhhcCCCCCCCCCEEEEE--E----
Q 002677 34 CLLKYGRR--G--KPKFCPFRLSNDESVLIWFSGKEEKHLKLSHVSRIISGQRTPIFQRYPRPEKEYQSFSLI--Y---- 103 (893)
Q Consensus 34 ~l~K~~~~--~--~p~~r~f~l~~d~~~l~W~~~~~~~~i~l~~I~eIr~G~~t~~f~~~~~~~~~~~~FSii--y---- 103 (893)
.|..|+++ | -++.|+|.|... .+..+..++... ..=|+....+-.+.+=.+ .+.....+-|-++ |
T Consensus 9 W~y~~g~~kig~~~~~~Ry~vl~~~--~~~~yK~~P~~~--~~pirs~~id~~~rVed~-Gr~~~~g~~~yvl~~Yn~~~ 83 (719)
T PLN00188 9 WMVRYGRRKIGRSYIHMRYFVLESR--LLAYYKKKPQDN--QVPIKTLLIDGNCRVEDR-GLKTHHGHMVYVLSVYNKKE 83 (719)
T ss_pred EEEEEcccccccccceeEEEEEecc--hhhhcccCCccc--cccceeeccCCCceEeec-CceEEcCceEEEEEEecCCC
Confidence 56667665 3 367888888765 455655543322 233344444444433222 1122222333332 2
Q ss_pred CCCceeEEeCCHHHHHHHHHHHHHHHHccc
Q 002677 104 NDRSLDLICKDKDEAEVWFSGLKALISRSH 133 (893)
Q Consensus 104 ~~rtLDLva~~~~e~~~Wv~gL~~Li~~~~ 133 (893)
.++-+-+-|.+.|||..|+..|+..+.+..
T Consensus 84 ~~~~~~~~a~~~eea~~W~~a~~~a~~q~~ 113 (719)
T PLN00188 84 KYHRITMAAFNIQEALIWKEKIESVIDQHQ 113 (719)
T ss_pred ccccEEEecCCHHHHHHHHHHHHHHHhhhc
Confidence 236899999999999999999999998653
No 144
>PRK00420 hypothetical protein; Validated
Probab=32.82 E-value=27 Score=32.91 Aligned_cols=27 Identities=30% Similarity=0.523 Sum_probs=16.4
Q ss_pred ccccccccCCCCccccccccccccCce
Q 002677 665 QSMCSGCRLPFNNFKRKRHNCYNCGLV 691 (893)
Q Consensus 665 ~s~Cs~C~~~F~~f~rkrhhC~~CG~v 691 (893)
...|+-|+.+|.-+...+.-|.+||.+
T Consensus 23 ~~~CP~Cg~pLf~lk~g~~~Cp~Cg~~ 49 (112)
T PRK00420 23 SKHCPVCGLPLFELKDGEVVCPVHGKV 49 (112)
T ss_pred cCCCCCCCCcceecCCCceECCCCCCe
Confidence 367999998865344444455555543
No 145
>PHA02790 Kelch-like protein; Provisional
Probab=32.50 E-value=2.6e+02 Score=33.09 Aligned_cols=15 Identities=13% Similarity=0.390 Sum_probs=11.3
Q ss_pred EEEEcCCCEEEcCCC
Q 002677 377 CAVTLSGDLYTWGDG 391 (893)
Q Consensus 377 ~aLT~dG~Vy~wG~n 391 (893)
.+..-+|+||+.|..
T Consensus 357 ~~~~~~g~IYviGG~ 371 (480)
T PHA02790 357 AVASINNVIYVIGGH 371 (480)
T ss_pred EEEEECCEEEEecCc
Confidence 445568999999864
No 146
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=32.43 E-value=1.2e+03 Score=29.87 Aligned_cols=121 Identities=13% Similarity=0.078 Sum_probs=63.3
Q ss_pred EecCCeEEEEEcCCcEEEEeCCCC---CCcCCCCCCCccccEEecccCCCcEEEEEe-----CCceEEEEEcCCCEEEcC
Q 002677 318 ACGGRHAALVNKQGEVFSWGEESG---GRLGHGVDSDVLHPKLIDALSNMNIELVAC-----GEYHTCAVTLSGDLYTWG 389 (893)
Q Consensus 318 a~G~~hs~~Lt~dG~Vy~wG~N~~---GqLG~g~~~~~~~P~~V~~l~~~~I~~Va~-----G~~hs~aLT~dG~Vy~wG 389 (893)
+....+.+++|+.|++|..-...- +..+.|..- ...+....+.+|+.+.+ -....+++|.+|.+.-.-
T Consensus 543 ~~t~d~LllfTs~Grv~~l~~~~IP~~~r~~~G~~i----~~ll~L~~~E~Iv~~i~~~~~~~~~~lvliT~~GyiKRi~ 618 (800)
T TIGR01063 543 ASTHDYLLFFTNRGKVYWLKVYQIPEASRTAKGKPI----VNLLPLQPDERITAILSVKEFDDGLYLFFATKNGVVKKTS 618 (800)
T ss_pred ecCCCeEEEEeCCCcEEEEEhhhCcCCCcCCCCcCH----HHhccCCCCCeEEEEEEeccCCCCCEEEEEeCCCEEEEEE
Confidence 344566889999999999843221 111112111 11223334566766655 223578889999776553
Q ss_pred CCCCCC-CccCCCCCcceeeeeeecCCCCCceEEEEe--eCCCeEEEEecCCeEEEeecCCCcccC
Q 002677 390 DGTYNF-GLLGHGNEVSHWVPKRVNGPLEGIHVSSIS--CGPWHTAVVTSAGQLFTFGDGTFGVLG 452 (893)
Q Consensus 390 ~n~~~~-GqLG~g~~~~~~~P~~v~~~l~~~~I~~Ia--~G~~hs~aLt~~G~Vy~wG~n~~GQLG 452 (893)
.+.+.. ...|. .....-++..++.+. ....+.+++|+.|++|.+-....-..|
T Consensus 619 l~~~~~~~r~G~----------~aiklke~D~lv~v~~~~~~d~lll~Ts~Gr~~r~~v~eIp~~g 674 (800)
T TIGR01063 619 LTEFSNIRSNGI----------IAIKLDDGDELISVRLTSGDDEVMLGSKNGKAVRFPEEDVRPMG 674 (800)
T ss_pred hHHhhhhccCCc----------ccccCCCCCEEEEEEEeCCCCEEEEEECCCcEEEEEhhhcCCcC
Confidence 332100 00010 000001233454443 344568999999999998765443333
No 147
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=32.21 E-value=7.2e+02 Score=27.38 Aligned_cols=18 Identities=6% Similarity=0.023 Sum_probs=12.2
Q ss_pred eeEEEecCCeEEEecCCC
Q 002677 598 HVAVLTSKTEVYTWGKGA 615 (893)
Q Consensus 598 Ht~aLt~~G~Vy~WG~N~ 615 (893)
++.+...++++|+.|-..
T Consensus 216 ~~~~~~~~~~iyv~GG~~ 233 (323)
T TIGR03548 216 AASIKINESLLLCIGGFN 233 (323)
T ss_pred eeEEEECCCEEEEECCcC
Confidence 344445678999998543
No 148
>COG5570 Uncharacterized small protein [Function unknown]
Probab=30.21 E-value=44 Score=26.81 Aligned_cols=25 Identities=32% Similarity=0.513 Sum_probs=21.6
Q ss_pred cccchhhHhhhHHHHHHHHHHHHhh
Q 002677 865 KIVVDDAKRTNDSLSQEVIKLRAQV 889 (893)
Q Consensus 865 ~~~~~~~~~~~~~~~~~~~~~~~~~ 889 (893)
...+.+||...=.|.+||.+|++|+
T Consensus 32 d~~i~eLKRrKL~lKeeIEkLka~~ 56 (57)
T COG5570 32 DLAIRELKRRKLRLKEEIEKLKAQM 56 (57)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhccC
Confidence 3456789999999999999999996
No 149
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=30.19 E-value=11 Score=40.74 Aligned_cols=46 Identities=28% Similarity=0.551 Sum_probs=29.7
Q ss_pred cccccccCCCCccccccccccccCceEeecCCCCcccccccCCCCCCCcccccchhhhhcc
Q 002677 666 SMCSGCRLPFNNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVCDNCFNKLRK 726 (893)
Q Consensus 666 s~Cs~C~~~F~~f~rkrhhC~~CG~v~C~~Cs~~~~~~~~~~~~~~~~~RVC~~C~~~l~~ 726 (893)
..|..|-..- ..-.|--||.+||++|=--. ..+++. |.-|..+.+.
T Consensus 240 ~kC~LCLe~~-----~~pSaTpCGHiFCWsCI~~w--------~~ek~e--CPlCR~~~~p 285 (293)
T KOG0317|consen 240 RKCSLCLENR-----SNPSATPCGHIFCWSCILEW--------CSEKAE--CPLCREKFQP 285 (293)
T ss_pred CceEEEecCC-----CCCCcCcCcchHHHHHHHHH--------HccccC--CCcccccCCC
Confidence 4577776532 23478899999999994222 122333 9999887654
No 150
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=30.10 E-value=1.2e+03 Score=29.27 Aligned_cols=112 Identities=16% Similarity=0.146 Sum_probs=62.8
Q ss_pred CccccCCCCcEEEEcCCCCCCccCCCCCCCCccccccccCCCceEecccCCCCEEEEEecCCeEEEEE--cCCcEEEEeC
Q 002677 261 GHDDGDALGDVFIWGEGTGDGVLGGGLNRVGSCFGVKMDSSLPKALESAVVLDVQNIACGGRHAALVN--KQGEVFSWGE 338 (893)
Q Consensus 261 ~~~~l~s~G~Vy~WG~n~~~GqLG~g~~~~~~~~~~~~~~~~P~~v~~~~~~~V~~Ia~G~~hs~~Lt--~dG~Vy~wG~ 338 (893)
....+...||-.++|+.. -|||+.-.=.. + ..+-++ ..-..+|..++-...-.++.| +||+|-.|-.
T Consensus 311 ~t~~~N~tGDWiA~g~~k-lgQLlVweWqs-------E-sYVlKQ--QgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~ 379 (893)
T KOG0291|consen 311 LTVSFNSTGDWIAFGCSK-LGQLLVWEWQS-------E-SYVLKQ--QGHSDRITSLAYSPDGQLIATGAEDGKVKVWNT 379 (893)
T ss_pred eEEEecccCCEEEEcCCc-cceEEEEEeec-------c-ceeeec--cccccceeeEEECCCCcEEEeccCCCcEEEEec
Confidence 345678889999999998 88888654110 0 011000 000113444444433333333 6788888865
Q ss_pred CCCCCcCCCCCCCccccEEecccCCCcEEEEEeCCceEEEEEcCCCEEEcCCCCC
Q 002677 339 ESGGRLGHGVDSDVLHPKLIDALSNMNIELVACGEYHTCAVTLSGDLYTWGDGTY 393 (893)
Q Consensus 339 N~~GqLG~g~~~~~~~P~~V~~l~~~~I~~Va~G~~hs~aLT~dG~Vy~wG~n~~ 393 (893)
.+.-.+ -+.-+.-.++..++...-.+..+-..-||.|-.|--..|
T Consensus 380 ~SgfC~----------vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRY 424 (893)
T KOG0291|consen 380 QSGFCF----------VTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRY 424 (893)
T ss_pred cCceEE----------EEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeeccc
Confidence 442111 011111234556677777777778888999999987754
No 151
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=30.08 E-value=19 Score=39.29 Aligned_cols=49 Identities=22% Similarity=0.689 Sum_probs=34.6
Q ss_pred cccccccccCCCCccccccccccccCceEeecCCCCcccccccCCCCCCCcccccchhhhhcccc
Q 002677 664 DQSMCSGCRLPFNNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVCDNCFNKLRKTF 728 (893)
Q Consensus 664 d~s~Cs~C~~~F~~f~rkrhhC~~CG~v~C~~Cs~~~~~~~~~~~~~~~~~RVC~~C~~~l~~~~ 728 (893)
....|..|+.+...+.|- .-|-.|||..|..-. +.++|..|-+++++..
T Consensus 89 ~VHfCd~Cd~PI~IYGRm----IPCkHvFCl~CAr~~------------~dK~Cp~C~d~VqrIe 137 (389)
T KOG2932|consen 89 RVHFCDRCDFPIAIYGRM----IPCKHVFCLECARSD------------SDKICPLCDDRVQRIE 137 (389)
T ss_pred ceEeecccCCcceeeecc----cccchhhhhhhhhcC------------ccccCcCcccHHHHHH
Confidence 355689999987766654 568889999997543 2567777777665543
No 152
>PF01286 XPA_N: XPA protein N-terminal; InterPro: IPR022652 Xeroderma pigmentosum (XP) [] is a human autosomal recessive disease, characterised by a high incidence of sunlight-induced skin cancer. Skin cells of individual's with this condition are hypersensitive to ultraviolet light, due to defects in the incision step of DNA excision repair. There are a minimum of seven genetic complementation groups involved in this pathway: XP-A to XP-G. XP-A is the most severe form of the disease and is due to defects in a 30 kDa nuclear protein called XPA (or XPAC) []. The sequence of the XPA protein is conserved from higher eukaryotes [] to yeast (gene RAD14) []. XPA is a hydrophilic protein of 247 to 296 amino-acid residues which has a C4-type zinc finger motif in its central section. This entry contains the zinc-finger containing region in the XPA protein. It is found N-terminal to PF05181 from PFAM ; PDB: 1D4U_A 1XPA_A.
Probab=30.03 E-value=34 Score=25.18 Aligned_cols=13 Identities=46% Similarity=0.846 Sum_probs=6.6
Q ss_pred CCCcccccchhhh
Q 002677 711 NKPYRVCDNCFNK 723 (893)
Q Consensus 711 ~~~~RVC~~C~~~ 723 (893)
...++|||.|.++
T Consensus 21 ~F~~~VCD~CRD~ 33 (34)
T PF01286_consen 21 NFDLPVCDKCRDK 33 (34)
T ss_dssp CTS-S--TTT-ST
T ss_pred hCCccccccccCC
Confidence 4678999999763
No 153
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=29.64 E-value=7.5e+02 Score=26.79 Aligned_cols=77 Identities=17% Similarity=0.129 Sum_probs=42.9
Q ss_pred CCCEEEEEecCCeEEEEEcCCcEEEEeCCCCCC-cCCCCCCCccccEEecccCCCcEE--EEEeCCceEEEEEcCCCEEE
Q 002677 311 VLDVQNIACGGRHAALVNKQGEVFSWGEESGGR-LGHGVDSDVLHPKLIDALSNMNIE--LVACGEYHTCAVTLSGDLYT 387 (893)
Q Consensus 311 ~~~V~~Ia~G~~hs~~Lt~dG~Vy~wG~N~~Gq-LG~g~~~~~~~P~~V~~l~~~~I~--~Va~G~~hs~aLT~dG~Vy~ 387 (893)
..+|-.++.-+.|-+ ..-||+||.|=.|..-. ++....-.+..|..+..++--.|- .+.-.++..++---||.+|+
T Consensus 62 dgpiy~~~f~d~~Ll-s~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~ 140 (325)
T KOG0649|consen 62 DGPIYYLAFHDDFLL-SGGDGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQ 140 (325)
T ss_pred CCCeeeeeeehhhee-eccCceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEE
Confidence 346777777665544 44569999999987655 555544456667666543322222 22222333333334555666
Q ss_pred c
Q 002677 388 W 388 (893)
Q Consensus 388 w 388 (893)
|
T Consensus 141 ~ 141 (325)
T KOG0649|consen 141 V 141 (325)
T ss_pred E
Confidence 6
No 154
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=29.10 E-value=28 Score=32.59 Aligned_cols=26 Identities=27% Similarity=0.769 Sum_probs=12.0
Q ss_pred ccccccCCCCccccccccccccCceE
Q 002677 667 MCSGCRLPFNNFKRKRHNCYNCGLVF 692 (893)
Q Consensus 667 ~Cs~C~~~F~~f~rkrhhC~~CG~v~ 692 (893)
+|..|+..|.=+.+.-..|..||..|
T Consensus 11 ~Cp~CG~kFYDLnk~PivCP~CG~~~ 36 (108)
T PF09538_consen 11 TCPSCGAKFYDLNKDPIVCPKCGTEF 36 (108)
T ss_pred cCCCCcchhccCCCCCccCCCCCCcc
Confidence 45555555543333333444444443
No 155
>KOG3795 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.60 E-value=39 Score=33.94 Aligned_cols=21 Identities=29% Similarity=0.735 Sum_probs=16.6
Q ss_pred cccccccccCc---eEeecCCCCc
Q 002677 680 RKRHNCYNCGL---VFCHSCSSKK 700 (893)
Q Consensus 680 rkrhhC~~CG~---v~C~~Cs~~~ 700 (893)
-.||+|+.|+. .||++|.-.-
T Consensus 13 eGRs~C~~C~~SRkFfCY~C~VPV 36 (230)
T KOG3795|consen 13 EGRSTCPGCKSSRKFFCYDCRVPV 36 (230)
T ss_pred cccccCCCCCCcceEEEEeecccc
Confidence 45899999984 6999998554
No 156
>KOG3751 consensus Growth factor receptor-bound proteins (GRB7, GRB10, GRB14) [Signal transduction mechanisms]
Probab=27.06 E-value=1.8e+02 Score=34.39 Aligned_cols=93 Identities=27% Similarity=0.366 Sum_probs=51.4
Q ss_pred hcCCeEEEE-ecCCCceEEEEEEeCCCCEEEEecCCcee----e------EEcccccceeeccCchhhhcCCCCCCCCCE
Q 002677 30 KKGACLLKY-GRRGKPKFCPFRLSNDESVLIWFSGKEEK----H------LKLSHVSRIISGQRTPIFQRYPRPEKEYQS 98 (893)
Q Consensus 30 ~~G~~l~K~-~~~~~p~~r~f~l~~d~~~l~W~~~~~~~----~------i~l~~I~eIr~G~~t~~f~~~~~~~~~~~~ 98 (893)
..|..-+|- ++|+|++. +|.|-.-. | |++.|.+. . +.=++|--..-| |.+-..+-+.|
T Consensus 319 i~GfL~~K~dgkKsWKk~-yf~LR~SG--L-Yys~K~tsk~~r~Lq~l~~~~~snVYt~i~~-------rKkyksPTd~~ 387 (622)
T KOG3751|consen 319 IQGFLYLKEDGKKSWKKH-YFVLRRSG--L-YYSTKGTSKEPRHLQCLADLHSSNVYTGIGG-------RKKYKSPTDYG 387 (622)
T ss_pred ccceeeecccccccceeE-EEEEecCc--c-eEccCCCCCCchhhHHHHhcccCceEEeecc-------hhccCCCCCce
Confidence 456666676 78888555 56665542 3 44443221 1 111222222222 11223455677
Q ss_pred EEEEEC-----CCcee-EEeCCHHHHHHHHHHHHHHHHccc
Q 002677 99 FSLIYN-----DRSLD-LICKDKDEAEVWFSGLKALISRSH 133 (893)
Q Consensus 99 FSiiy~-----~rtLD-Lva~~~~e~~~Wv~gL~~Li~~~~ 133 (893)
|.|--. .|.|- |.|+|+..+..|+++||.+--..+
T Consensus 388 f~~K~~~~~~~~r~lk~lCAEDe~t~~~WltAiRl~KyG~q 428 (622)
T KOG3751|consen 388 FCIKPNKLRNKRRFLKMLCAEDEQTRTCWLTAIRLLKYGMQ 428 (622)
T ss_pred EEeeeccccCcccceeeeecccchhHHHHHHHHHHHHHHHH
Confidence 777662 26676 556777889999999987654443
No 157
>cd01225 PH_Cool_Pix Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool/Pix contains an N-terminal SH3 domain followed by a RhoGEF (DH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=27.00 E-value=4.9e+02 Score=24.58 Aligned_cols=80 Identities=15% Similarity=0.148 Sum_probs=49.4
Q ss_pred cCCCceEEEEEEeCCCCEEEEecCC-----ceeeEEcccccceeeccCchhhhcCCCCCCCCCEEEEEECC-CceeEEeC
Q 002677 40 RRGKPKFCPFRLSNDESVLIWFSGK-----EEKHLKLSHVSRIISGQRTPIFQRYPRPEKEYQSFSLIYND-RSLDLICK 113 (893)
Q Consensus 40 ~~~~p~~r~f~l~~d~~~l~W~~~~-----~~~~i~l~~I~eIr~G~~t~~f~~~~~~~~~~~~FSiiy~~-rtLDLva~ 113 (893)
...-.+.|+|.|=+..--+.=.+++ -++.++|..|.=.+. .++ +....+|-|.-.. ..+=++|.
T Consensus 24 ~~qe~~eRyLvLFp~~LlilS~s~r~sGf~yqGkLPL~~i~v~~l-Ed~---------e~~~~aFeI~G~li~~i~v~C~ 93 (111)
T cd01225 24 AGEEKRERYLVLFPNVLLMLSASPRMSGFIYQGKLPLTGIIVTRL-EDT---------EALKNAFEISGPLIERIVVVCN 93 (111)
T ss_pred CccccceeEEEEcCceEEEEEcCCCccceEEeeeecccccEEech-Hhc---------cCccceEEEeccCcCcEEEEeC
Confidence 3445678888876663332222222 255677766542221 111 2235677776444 68889999
Q ss_pred CHHHHHHHHHHHHHHH
Q 002677 114 DKDEAEVWFSGLKALI 129 (893)
Q Consensus 114 ~~~e~~~Wv~gL~~Li 129 (893)
+.+|++.|+.-|+..+
T Consensus 94 ~~~e~~~Wl~hL~~~~ 109 (111)
T cd01225 94 NPQDAQEWVELLNANN 109 (111)
T ss_pred CHHHHHHHHHHHHhhc
Confidence 9999999999998754
No 158
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=26.58 E-value=62 Score=38.50 Aligned_cols=39 Identities=15% Similarity=0.432 Sum_probs=33.0
Q ss_pred CCCCCCEEEEEEC-CCceeEEeCCHHHHHHHHHHHHHHHH
Q 002677 92 PEKEYQSFSLIYN-DRSLDLICKDKDEAEVWFSGLKALIS 130 (893)
Q Consensus 92 ~~~~~~~FSiiy~-~rtLDLva~~~~e~~~Wv~gL~~Li~ 130 (893)
.+.|+-||-||-- ..+.+++|.+-||++.||.++..=|-
T Consensus 441 ndEEde~F~IVs~tgqtWhFeAtt~EERdaWvQai~sqIl 480 (749)
T KOG0705|consen 441 NDEEDECFEIVSNTGQTWHFEATTYEERDAWVQAIQSQIL 480 (749)
T ss_pred CccccceEEEeccccchhhhhhcchhhHHHHHHHHHHHHH
Confidence 3667789999984 48999999999999999999975443
No 159
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=25.72 E-value=37 Score=32.58 Aligned_cols=26 Identities=19% Similarity=0.374 Sum_probs=14.3
Q ss_pred ccccccCCCCccccccccccccCceE
Q 002677 667 MCSGCRLPFNNFKRKRHNCYNCGLVF 692 (893)
Q Consensus 667 ~Cs~C~~~F~~f~rkrhhC~~CG~v~ 692 (893)
+|..|+..|.=+.+.-..|..||..+
T Consensus 11 ~Cp~cg~kFYDLnk~p~vcP~cg~~~ 36 (129)
T TIGR02300 11 ICPNTGSKFYDLNRRPAVSPYTGEQF 36 (129)
T ss_pred cCCCcCccccccCCCCccCCCcCCcc
Confidence 46666666654444445555555544
No 160
>COG3871 Uncharacterized stress protein (general stress protein 26) [General function prediction only]
Probab=24.27 E-value=3.2e+02 Score=27.04 Aligned_cols=96 Identities=21% Similarity=0.395 Sum_probs=59.7
Q ss_pred ccHHHHHHHHhcCCeEEEE---ecCCCceEEEEEEeCCC--CEEEEecCCceeeEEcccccceeeccCchhhhcCCCCCC
Q 002677 20 RDTEQAITALKKGACLLKY---GRRGKPKFCPFRLSNDE--SVLIWFSGKEEKHLKLSHVSRIISGQRTPIFQRYPRPEK 94 (893)
Q Consensus 20 ~~~~~~l~~L~~G~~l~K~---~~~~~p~~r~f~l~~d~--~~l~W~~~~~~~~i~l~~I~eIr~G~~t~~f~~~~~~~~ 94 (893)
.+..+++..+.+|..+.-+ .-.|.||.|+..+..|. ..| |..+++.. .-|+||+.+.+
T Consensus 4 ~~~~~~~~~~~e~~kv~~l~tv~~~g~phsRpM~f~hdg~~~ti-wf~T~kds----~~v~eik~n~~------------ 66 (145)
T COG3871 4 SKALQALAELLEGSKVGMLATVQENGHPHSRPMTFNHDGPKGTI-WFFTNKDS----RKVEEIKKNPK------------ 66 (145)
T ss_pred HHHHHHHHHHHhhCceEEEEEecCCCCccccceeccCCCCcccE-EeeccCch----HHHHHHhhCCc------------
Confidence 3556777777788665544 55689999999988876 554 76654332 33666665544
Q ss_pred CCCEEEEEECCC--------ceeEEeCCHHHHHHHHHHHHHHHHcccc
Q 002677 95 EYQSFSLIYNDR--------SLDLICKDKDEAEVWFSGLKALISRSHH 134 (893)
Q Consensus 95 ~~~~FSiiy~~r--------tLDLva~~~~e~~~Wv~gL~~Li~~~~~ 134 (893)
.||.+.|.+. ++-|+-+-+--=..|-..|+..-....+
T Consensus 67 --v~v~~~~~~~~~fv~v~Gtael~~dra~~d~~W~~~~~~wFe~Gke 112 (145)
T COG3871 67 --VCVLFGYDDHDAFVEVSGTAELVEDRAKIDELWTSVLEAWFEQGKE 112 (145)
T ss_pred --EEEEEecCCCcceEEEEEEEEeeccHHHHHHhhhhhHHHHHhcCCC
Confidence 4677777553 2333332222334599998888765553
No 161
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=23.93 E-value=17 Score=40.04 Aligned_cols=74 Identities=20% Similarity=0.300 Sum_probs=29.3
Q ss_pred ccCCCccceeeeeeeccCccccccccccCCCCccccccccccccCceEeecCCCCccccccc--CCCCCCCcccccchhh
Q 002677 645 ACGTNFTAAICLHKWVSGVDQSMCSGCRLPFNNFKRKRHNCYNCGLVFCHSCSSKKSLKASM--APNPNKPYRVCDNCFN 722 (893)
Q Consensus 645 acG~~hT~al~~~kwv~~~d~s~Cs~C~~~F~~f~rkrhhC~~CG~v~C~~Cs~~~~~~~~~--~~~~~~~~RVC~~C~~ 722 (893)
.||+...+.+....--.+...-.|+.|+.... ..|..|..||.--- ..+..+ .......+-||+.|..
T Consensus 177 vCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~---~~R~~Cp~Cg~~~~-------~~l~~~~~e~~~~~rve~C~~C~~ 246 (290)
T PF04216_consen 177 VCGSPPVLSVLRGGEREGKRYLHCSLCGTEWR---FVRIKCPYCGNTDH-------EKLEYFTVEGEPAYRVEVCESCGS 246 (290)
T ss_dssp TT---EEEEEEE------EEEEEETTT--EEE-----TTS-TTT---SS--------EEE--------SEEEEEETTTTE
T ss_pred CCCCcCceEEEecCCCCccEEEEcCCCCCeee---ecCCCCcCCCCCCC-------cceeeEecCCCCcEEEEECCcccc
Confidence 46666555544321112334455777776543 23456666654221 111222 2222345678999998
Q ss_pred hhcccc
Q 002677 723 KLRKTF 728 (893)
Q Consensus 723 ~l~~~~ 728 (893)
.++...
T Consensus 247 YlK~vd 252 (290)
T PF04216_consen 247 YLKTVD 252 (290)
T ss_dssp EEEEEE
T ss_pred hHHHHh
Confidence 887655
No 162
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=23.88 E-value=11 Score=37.95 Aligned_cols=48 Identities=27% Similarity=0.548 Sum_probs=32.0
Q ss_pred cccccccCCCCccccccccccccCceEeecCCCCcccccccCCCCCCCcccccchhhhhcc
Q 002677 666 SMCSGCRLPFNNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVCDNCFNKLRK 726 (893)
Q Consensus 666 s~Cs~C~~~F~~f~rkrhhC~~CG~v~C~~Cs~~~~~~~~~~~~~~~~~RVC~~C~~~l~~ 726 (893)
..|..|-..|. .+.-.--.||.|||..|-..- -+..++|..|..++..
T Consensus 132 ~~CPiCl~~~s---ek~~vsTkCGHvFC~~Cik~a----------lk~~~~CP~C~kkIt~ 179 (187)
T KOG0320|consen 132 YKCPICLDSVS---EKVPVSTKCGHVFCSQCIKDA----------LKNTNKCPTCRKKITH 179 (187)
T ss_pred cCCCceecchh---hccccccccchhHHHHHHHHH----------HHhCCCCCCcccccch
Confidence 45667766654 222233579999999997543 2456899999887644
No 163
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=23.33 E-value=27 Score=40.83 Aligned_cols=52 Identities=25% Similarity=0.406 Sum_probs=36.6
Q ss_pred ccccccccCCCCccccccccccccCceEeecCCCCcccccccCCCCCCCcccccchhhhhcc
Q 002677 665 QSMCSGCRLPFNNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVCDNCFNKLRK 726 (893)
Q Consensus 665 ~s~Cs~C~~~F~~f~rkrhhC~~CG~v~C~~Cs~~~~~~~~~~~~~~~~~RVC~~C~~~l~~ 726 (893)
...|+.|-.++..-.+ -+||.+||..|-=...... ..+..+-|.-|+..+.-
T Consensus 186 ~~~CPICL~~~~~p~~-----t~CGHiFC~~CiLqy~~~s-----~~~~~~~CPiC~s~I~~ 237 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVR-----TNCGHIFCGPCILQYWNYS-----AIKGPCSCPICRSTITL 237 (513)
T ss_pred CCcCCcccCCCCcccc-----cccCceeeHHHHHHHHhhh-----cccCCccCCchhhhccc
Confidence 4568888887662222 2499999999964443222 35788999999998766
No 164
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=22.99 E-value=1.6e+03 Score=28.30 Aligned_cols=121 Identities=24% Similarity=0.282 Sum_probs=57.2
Q ss_pred CCCcEEEEcCCCCCCccCCCCCCCCccccccccCCCceEec-ccCCCCEEEEEec--CCeEEEEEcCCcEEE-----EeC
Q 002677 267 ALGDVFIWGEGTGDGVLGGGLNRVGSCFGVKMDSSLPKALE-SAVVLDVQNIACG--GRHAALVNKQGEVFS-----WGE 338 (893)
Q Consensus 267 s~G~Vy~WG~n~~~GqLG~g~~~~~~~~~~~~~~~~P~~v~-~~~~~~V~~Ia~G--~~hs~~Lt~dG~Vy~-----wG~ 338 (893)
.++++|+|=.+. ...+-..--...............+.+. ....+.|.+|... +.|.+++-..|=+.. ||.
T Consensus 40 ~d~~L~vWd~~e-~~l~~~nlr~~~~~~~~~~~~~~q~L~~~~~~~f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~ 118 (717)
T PF10168_consen 40 RDGDLFVWDSSE-CCLLTVNLRSLESDAEGPAKSSYQKLLPSNPPLFEVHQISLNPTGSLLALVGPRGVVVLELPRRWGK 118 (717)
T ss_pred eCCEEEEEECCC-CEEEEEeeccccccccCccccCcceeecCCCCceeEEEEEECCCCCEEEEEcCCcEEEEEeccccCc
Confidence 469999999988 5443331100000000001111222221 2234578888865 344455555543221 776
Q ss_pred CCCCCcCCCCCCCccccEEeccc---CCCcEEEEE-----eCCceEEEEEcCCCEEEc
Q 002677 339 ESGGRLGHGVDSDVLHPKLIDAL---SNMNIELVA-----CGEYHTCAVTLSGDLYTW 388 (893)
Q Consensus 339 N~~GqLG~g~~~~~~~P~~V~~l---~~~~I~~Va-----~G~~hs~aLT~dG~Vy~w 388 (893)
+.+-+-|.....-...|.--..+ ....|.+|. ..+.|.++||+|+.+-.+
T Consensus 119 ~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y 176 (717)
T PF10168_consen 119 NGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLY 176 (717)
T ss_pred cccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEE
Confidence 54333333221111222211111 234677774 457999999999975443
No 165
>cd01231 PH_Lnk LNK-family Pleckstrin homology (PH) domain. LNK-family Pleckstrin homology (PH) domain. The Lnk family of proteins consists of Lnk, APS and SH2B. They are adaptor proteins consisting of a PH domain and an SH2 domain, which mediates signaling through growth factor receptors. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. The lnk family PH domain is likely involved in targeting of the adaptor proteins to the plasma membrane.
Probab=22.40 E-value=3.7e+02 Score=24.99 Aligned_cols=61 Identities=18% Similarity=0.257 Sum_probs=41.7
Q ss_pred EecCCceeeEEcccccceeeccCchhhhcCCCCCCCCCEEEEEECCCc-eeEEeCCHHHHHHHHHHHHH
Q 002677 60 WFSGKEEKHLKLSHVSRIISGQRTPIFQRYPRPEKEYQSFSLIYNDRS-LDLICKDKDEAEVWFSGLKA 127 (893)
Q Consensus 60 W~~~~~~~~i~l~~I~eIr~G~~t~~f~~~~~~~~~~~~FSiiy~~rt-LDLva~~~~e~~~Wv~gL~~ 127 (893)
|+++|++-.|..+.|.|||.-..= +-.+...-|-|=..+.+ .=|.|.|+++.+.|+.-|+.
T Consensus 45 PKssrpk~~v~C~~I~EvR~tt~L-------EmPD~~nTFvLK~~~~~eyI~Ea~d~~q~~SWla~Ir~ 106 (107)
T cd01231 45 PKSSKPKLQVACSSISEVRECTRL-------EMPDNLYTFVLKVDDNTDIIFEVGDEQQLNSWLAELRY 106 (107)
T ss_pred CCCCCCccccchhhhhhhhhcccc-------cccCcccEEEEEecCCceEEEEcCCHHHHHHHHHHHhc
Confidence 455677778999999999864322 11223445666555544 44779999999999998763
No 166
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=22.10 E-value=1.9e+02 Score=20.19 Aligned_cols=25 Identities=40% Similarity=0.457 Sum_probs=20.7
Q ss_pred CceEEEEeeCCCeEEEEecCCeEEE
Q 002677 418 GIHVSSISCGPWHTAVVTSAGQLFT 442 (893)
Q Consensus 418 ~~~I~~Ia~G~~hs~aLt~~G~Vy~ 442 (893)
++.|..|++|....++.|+.+-|-.
T Consensus 1 gE~i~aia~g~~~vavaTS~~~lRi 25 (27)
T PF12341_consen 1 GEEIEAIAAGDSWVAVATSAGYLRI 25 (27)
T ss_pred CceEEEEEccCCEEEEEeCCCeEEe
Confidence 3579999999999999999886543
No 167
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=21.61 E-value=2.3e+02 Score=31.70 Aligned_cols=57 Identities=19% Similarity=0.352 Sum_probs=42.3
Q ss_pred ccCCCCcEEEEcCCCCCCccCCCCCCCCccccccccCCCceEecccCCCCEEEEEecCC--eEEEEEcCCcEEEEeC
Q 002677 264 DGDALGDVFIWGEGTGDGVLGGGLNRVGSCFGVKMDSSLPKALESAVVLDVQNIACGGR--HAALVNKQGEVFSWGE 338 (893)
Q Consensus 264 ~l~s~G~Vy~WG~n~~~GqLG~g~~~~~~~~~~~~~~~~P~~v~~~~~~~V~~Ia~G~~--hs~~Lt~dG~Vy~wG~ 338 (893)
.....|+||+|---. .++...|+...+.....|+|.+.... ..++++++|.||.|-.
T Consensus 324 ~gnq~g~v~vwdL~~------------------~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 324 LGNQSGKVYVWDLDN------------------NEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred hccCCCcEEEEECCC------------------CCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 346789999997655 13346777777777778999888754 4566789999999963
No 168
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=21.37 E-value=13 Score=45.29 Aligned_cols=47 Identities=26% Similarity=0.609 Sum_probs=33.6
Q ss_pred ccccccccCCCCccccccccccccCceEeecCCCCcccccccCCCCCCCcccccchhhhhc
Q 002677 665 QSMCSGCRLPFNNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVCDNCFNKLR 725 (893)
Q Consensus 665 ~s~Cs~C~~~F~~f~rkrhhC~~CG~v~C~~Cs~~~~~~~~~~~~~~~~~RVC~~C~~~l~ 725 (893)
.-.|+-|...+- .---..||.+||..|..... ....|-|+.|-.-+.
T Consensus 643 ~LkCs~Cn~R~K-----d~vI~kC~H~FC~~Cvq~r~---------etRqRKCP~Cn~aFg 689 (698)
T KOG0978|consen 643 LLKCSVCNTRWK-----DAVITKCGHVFCEECVQTRY---------ETRQRKCPKCNAAFG 689 (698)
T ss_pred ceeCCCccCchh-----hHHHHhcchHHHHHHHHHHH---------HHhcCCCCCCCCCCC
Confidence 346888885443 23345799999999997651 357899999976553
No 169
>KOG0930 consensus Guanine nucleotide exchange factor Cytohesin, contains PH and Sec7 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.16 E-value=4e+02 Score=29.16 Aligned_cols=98 Identities=20% Similarity=0.323 Sum_probs=54.3
Q ss_pred cCCeEEEEecC---CCceEEEEEEeCCCCEEEEec---CC-ceeeEEcccc--cceeeccCchhhhcCCCC---CCCCCE
Q 002677 31 KGACLLKYGRR---GKPKFCPFRLSNDESVLIWFS---GK-EEKHLKLSHV--SRIISGQRTPIFQRYPRP---EKEYQS 98 (893)
Q Consensus 31 ~G~~l~K~~~~---~~p~~r~f~l~~d~~~l~W~~---~~-~~~~i~l~~I--~eIr~G~~t~~f~~~~~~---~~~~~~ 98 (893)
+-..|+|.+.+ .| |+|.|-|..+ +|.+.. .| ++..|+|..+ ++|---.+---|..+... ...--|
T Consensus 262 REGWLlKlgg~rvktW-KrRWFiLtdN--CLYYFe~tTDKEPrGIIpLeNlsir~VedP~kP~cfEly~ps~~gq~IKAC 338 (395)
T KOG0930|consen 262 REGWLLKLGGNRVKTW-KRRWFILTDN--CLYYFEYTTDKEPRGIIPLENLSIREVEDPKKPNCFELYIPSNKGQVIKAC 338 (395)
T ss_pred ccceeeeecCCcccch-hheeEEeecc--eeeeeeeccCCCCCcceeccccceeeccCCCCCCeEEEecCCCCcCeeeee
Confidence 34578888663 33 6778888776 455533 34 4556777643 444333333222222000 000000
Q ss_pred E-----EEEECCC-ceeEEeCCHHHHHHHHHHHHHHHHc
Q 002677 99 F-----SLIYNDR-SLDLICKDKDEAEVWFSGLKALISR 131 (893)
Q Consensus 99 F-----Siiy~~r-tLDLva~~~~e~~~Wv~gL~~Li~~ 131 (893)
= -+|-|.+ .--+-|.++||.+.|+..+++.|++
T Consensus 339 KTe~DGRvVEG~H~vYrIsA~~~Ee~~~Wi~sI~a~is~ 377 (395)
T KOG0930|consen 339 KTEADGRVVEGNHSVYRISAPTPEEKDEWIKSIKAAISR 377 (395)
T ss_pred cccCCceeEeccceEEEeeCCCHHHHHHHHHHHHHHhcc
Confidence 0 0111222 3468899999999999999999974
No 170
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=20.91 E-value=1.9e+02 Score=20.20 Aligned_cols=25 Identities=36% Similarity=0.283 Sum_probs=20.7
Q ss_pred CCceEEEEecCCeeEEEecCCeEEE
Q 002677 586 KSFVEEIACGSYHVAVLTSKTEVYT 610 (893)
Q Consensus 586 ~~~V~~Is~G~~Ht~aLt~~G~Vy~ 610 (893)
++.|+.|++|...+++.|+.+-|=.
T Consensus 1 gE~i~aia~g~~~vavaTS~~~lRi 25 (27)
T PF12341_consen 1 GEEIEAIAAGDSWVAVATSAGYLRI 25 (27)
T ss_pred CceEEEEEccCCEEEEEeCCCeEEe
Confidence 3668999999999999999886543
No 171
>PF15410 PH_9: Pleckstrin homology domain; PDB: 1WJM_A 1BTN_A 1MPH_A.
Probab=20.54 E-value=3.4e+02 Score=25.57 Aligned_cols=35 Identities=20% Similarity=0.341 Sum_probs=26.7
Q ss_pred CCCCEEEEEECC-CceeEEeCCHHHHHHHHHHHHHH
Q 002677 94 KEYQSFSLIYND-RSLDLICKDKDEAEVWFSGLKAL 128 (893)
Q Consensus 94 ~~~~~FSiiy~~-rtLDLva~~~~e~~~Wv~gL~~L 128 (893)
+-...|-|...+ ...=|.|.|++|++.||..|++.
T Consensus 82 Kr~~VFrL~~~dg~e~Lfqa~~~~~m~~Wi~~IN~~ 117 (119)
T PF15410_consen 82 KRKNVFRLRTADGSEYLFQASDEEEMNEWIDAINYA 117 (119)
T ss_dssp TCSSEEEEE-TTS-EEEEE-SSHHHHHHHHHHHHHH
T ss_pred cCCeEEEEEeCCCCEEEEECCCHHHHHHHHHHHhhh
Confidence 346788888865 56678999999999999999874
No 172
>KOG3576 consensus Ovo and related transcription factors [Transcription]
Probab=20.48 E-value=23 Score=36.50 Aligned_cols=14 Identities=36% Similarity=0.887 Sum_probs=7.4
Q ss_pred cccccCceEeecCC
Q 002677 684 NCYNCGLVFCHSCS 697 (893)
Q Consensus 684 hC~~CG~v~C~~Cs 697 (893)
.|..|++.|-..||
T Consensus 175 kc~~c~kaftqrcs 188 (267)
T KOG3576|consen 175 KCSLCEKAFTQRCS 188 (267)
T ss_pred chhhhhHHHHhhcc
Confidence 35555555555554
No 173
>PF07304 SRA1: Steroid receptor RNA activator (SRA1); InterPro: IPR009917 This entry consists of several hypothetical mammalian steroid receptor RNA activator proteins. The SRA-RNAs encode stable proteins that are widely expressed and upregulated in breast cancer cell lines. SRA-RNA is a steroid receptor co-activator which acts as a functional RNA. This domain is also found at the C terminus of Sec31, a component of the coat protein complex II (COPII, which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). COPII has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules. ; PDB: 2YRU_A.
Probab=20.26 E-value=22 Score=35.59 Aligned_cols=29 Identities=31% Similarity=0.589 Sum_probs=25.5
Q ss_pred ceeEEeCCHHHHHHHHHHHHHHHHccccc
Q 002677 107 SLDLICKDKDEAEVWFSGLKALISRSHHR 135 (893)
Q Consensus 107 tLDLva~~~~e~~~Wv~gL~~Li~~~~~~ 135 (893)
-.+|++...+|+..|..||+.||...+.-
T Consensus 113 h~~L~t~h~~E~~~WmvGVKRLI~~~r~~ 141 (157)
T PF07304_consen 113 HVDLMTDHVDECGNWMVGVKRLIAMARNL 141 (157)
T ss_dssp HHHHHHSSHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHhhhHHHHHHHHHHHHHhc
Confidence 45788999999999999999999988754
No 174
>PF15616 TerY-C: TerY-C metal binding domain
Probab=20.11 E-value=86 Score=30.43 Aligned_cols=42 Identities=26% Similarity=0.586 Sum_probs=30.5
Q ss_pred cccccccccCCCCccccccccccccCceEeecCCCCcccccccCCCCCCCcccccchhhhhcc
Q 002677 664 DQSMCSGCRLPFNNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVCDNCFNKLRK 726 (893)
Q Consensus 664 d~s~Cs~C~~~F~~f~rkrhhC~~CG~v~C~~Cs~~~~~~~~~~~~~~~~~RVC~~C~~~l~~ 726 (893)
+...|+.|++.|. |. -| .||+++|.+= ...=+|.+|-....-
T Consensus 76 g~PgCP~CGn~~~-fa----~C-~CGkl~Ci~g---------------~~~~~CPwCg~~g~~ 117 (131)
T PF15616_consen 76 GAPGCPHCGNQYA-FA----VC-GCGKLFCIDG---------------EGEVTCPWCGNEGSF 117 (131)
T ss_pred CCCCCCCCcChhc-EE----Ee-cCCCEEEeCC---------------CCCEECCCCCCeeee
Confidence 4578999999988 33 35 7999999641 235789999776543
Done!