Query 002677
Match_columns 893
No_of_seqs 553 out of 3006
Neff 7.1
Searched_HMMs 29240
Date Tue Mar 26 21:29:24 2013
Command hhsearch -i /local_scratch/syshi/lefta3m2/002677.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H2_77-80//hhsearch_pdb/002677hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kci_A Probable E3 ubiquitin-p 1.0 1 1 570.6 35.7 372 261-658 12-388 (389)
2 4d9s_A UVB-resistance protein 1.0 1 1 556.3 39.9 358 255-638 20-380 (406)
3 3of7_A Regulator of chromosome 1.0 1 1 547.4 39.7 372 261-658 21-451 (473)
4 1a12_A RCC1, regulator of chro 1.0 1 1 540.5 42.5 366 260-658 18-410 (413)
5 3mvd_K Regulator of chromosome 1.0 1 1 539.2 44.3 369 256-658 29-419 (423)
6 4d9s_A UVB-resistance protein 1.0 1 1 516.9 40.9 331 311-657 15-347 (406)
7 3kci_A Probable E3 ubiquitin-p 1.0 1 1 486.5 30.8 327 316-657 5-335 (389)
8 3mvd_K Regulator of chromosome 1.0 1 1 471.7 30.1 322 312-657 24-364 (423)
9 3of7_A Regulator of chromosome 1.0 1 1 469.1 25.3 323 314-656 12-394 (473)
10 1a12_A RCC1, regulator of chro 1.0 1 1 463.1 34.2 327 253-607 61-411 (413)
No 1
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=1.00 E-value=1 Score=570.56 Aligned_cols=372 Identities=36% Similarity=0.636 Sum_probs=343.9
Q ss_pred CCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEECCCEEEEEECCCCEEEEECCC
Q ss_conf 74223889949998389999734898887773356555677836723468898799996487599998499199993899
Q 002677 261 GHDDGDALGDVFIWGEGTGDGVLGGGLNRVGSCFGVKMDSSLPKALESAVVLDVQNIACGGRHAALVNKQGEVFSWGEES 340 (893)
Q Consensus 261 ~~~~~~s~G~Vy~WG~n~~~GqLG~g~~~~~~~~~~~~~~~~P~~i~~~~~~~V~~Ia~G~~ht~~lt~~G~Vy~wG~n~ 340 (893)
.+.+++++|+||+||.|. .||||.++ ..+...|.+++.+...+|++|+||..|+++|+++|+||+||.|.
T Consensus 12 ~~~~l~~~G~v~~wG~n~-~GqLG~~~---------~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~l~~~G~v~~wG~n~ 81 (389)
T 3kci_A 12 ENLYFQGSGTIYGWGHNH-RGQLGGIE---------GAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGYGA 81 (389)
T ss_dssp ---------CEEEEEECT-TSTTSSCS---------CSEEEEEEECHHHHHTCEEEEEEETTEEEEEETTSCEEEEECCG
T ss_pred CCEEECCCCEEEEEECCC-CCCCCCCC---------CCCCCCCEECCCCCCCCEEEEEECCCEEEEECCCCCEEEEECCC
T ss_conf 226688998699703899-75189896---------86642777601346786599984777399995898199988999
Q ss_pred CCCCCCCCCCCCCCCEEECCCCCCCE--EEEEECCCEEEEEECCCCEEECCCCCCCCCCCCCCCCCCEEEEEEECCCCCC
Q ss_conf 99767889977433478403689838--9997079569999838989991999889874589998414421364489999
Q 002677 341 GGRLGHGVDSDVLHPKLIDALSNMNI--ELVACGEYHTCAVTLSGDLYTWGDGTYNFGLLGHGNEVSHWVPKRVNGPLEG 418 (893)
Q Consensus 341 ~GqLG~g~~~~~~~P~~V~~l~~~~I--~~Ia~G~~ht~aLT~dG~Vy~wG~n~~~~GqLG~g~~~~~~~P~~V~~~l~g 418 (893)
+||||.+...+...|.++..+....+ ++|+||.+|+++|+++|+||+||.| ..||||+++......|.++.. +.+
T Consensus 82 ~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n--~~GqLG~g~~~~~~~p~~v~~-l~~ 158 (389)
T 3kci_A 82 GGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEA--EDGKLGHGNRSPCDRPRVIES-LRG 158 (389)
T ss_dssp GGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECC--GGGTTCSSSCCCEEEEEECGG-GTT
T ss_pred CCCCCCCCCCCCCCCEECCCCCCCCEEEEEECCCCCEEEEECCCCCEEEEECC--CCCCCCCCCCCCCCCCEEECC-CCC
T ss_conf 98889899677337777110157732599987687749999489979997299--898678998756758768436-689
Q ss_pred CEEEEEEECCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCEEEECCCCCEEEEEEECC--CEEEEEEEEEECCCCC
Q ss_conf 60999862797279990598099820699865689999653345455215898399998279--6479999853148886
Q 002677 419 IHVSSISCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRKSVSIPREVESLKGLRTVRAACGV--WHTAAVVEVMVGNSSS 496 (893)
Q Consensus 419 ~~I~~Ia~G~~Ht~alt~~G~vy~wG~n~~GQLG~g~~~~~~~P~~V~~l~~~~V~~VacG~--~ht~aite~~~~~~~~ 496 (893)
.+|++|+||..|+++|+++|+||+||.|.+||||+++......|+.+..+.+.+|++|+||. .|+++++
T Consensus 159 ~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~--------- 229 (389)
T 3kci_A 159 IEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLT--------- 229 (389)
T ss_dssp SCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSSCEEEEEE---------
T ss_pred CEEEEEEECCCEEEEEECCCEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEEECCCCCEEEEEC---------
T ss_conf 73999971758589994898089948998887689998660455685045898399999768985899990---------
Q ss_pred CCCCCCCEEEEECCCCCCCCCCCCCCEEECEEEECCCCCCEEEEECCCCEEEEEECCCCEEEECCCCCCCCCCCCCCC-C
Q ss_conf 436899299993899997689998751310885014789635541378689999649919999099988679999999-8
Q 002677 497 SNCSSGKLFTWGDGDKGRLGHGDKEAKLVPTCVAALVEPNFCRVACGHSLTVALTTSGHVYTMGSPVYGQLGNPQADG-K 575 (893)
Q Consensus 497 ~~~~~G~Ly~WG~n~~GqLG~g~~~~~~~P~~V~~l~~~~I~~Ia~G~~htiaLt~dG~Vy~wG~N~~GQLG~~~~~~-~ 575 (893)
.+|+||+||.|.+||||.++......|+.|..+.+..|++|+||.+|+++|+++|+||+||.|.+||||.+.... .
T Consensus 230 ---~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~ 306 (389)
T 3kci_A 230 ---DDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVR 306 (389)
T ss_dssp ---TTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEETTEEEEEETTSCEEEEECCGGGTTCSSSCCCEE
T ss_pred ---CCCEEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEECCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCC
T ss_conf ---59979997399888779899888544679546689967999479987999958993999858999888899986620
Q ss_pred CCCEECCCCCCCCEEEEEECCCEEEEEECCCEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEECCCCCCCCEEE
Q ss_conf 67021145678866999966780278705996999618999978999999986667952257995999704787321065
Q 002677 576 LPNRVEGKLSKSFVEEIACGSYHVAVLTSKTEVYTWGKGANGRLGHGDTDDRNSPSLVEALKDKQVKSIACGTNFTAAIC 655 (893)
Q Consensus 576 ~P~~v~~~l~~~~V~~Is~G~~Ht~aLt~~G~Vy~WG~n~~GQLG~g~~~~~~~P~~V~~l~~~~V~~IacG~~hT~ai~ 655 (893)
.|..+.. +.+..|++|+||.+|+++|+++|+||+||.|.+||||+|+..+...|++|+.+.+.+|.+|+||.+||+||+
T Consensus 307 ~P~~v~~-l~~~~v~~ia~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~v~~va~G~~ht~al~ 385 (389)
T 3kci_A 307 RPRQVQG-LQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQRPRLVAALQGKKVNRVACGSAHTLAWS 385 (389)
T ss_dssp EEEECGG-GTTCCEEEEEECSSEEEEEETTCCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCCCEEEEETTEEEEEC
T ss_pred CCEEECC-CCCCCEEEEEECCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEECCCCEEEEE
T ss_conf 8758514-799988999944570999989998998038998868898987746767911358998799996678289994
Q ss_pred EEE
Q ss_conf 310
Q 002677 656 LHK 658 (893)
Q Consensus 656 ~~k 658 (893)
..+
T Consensus 386 ~~~ 388 (389)
T 3kci_A 386 TSK 388 (389)
T ss_dssp C--
T ss_pred CCC
T ss_conf 699
No 2
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=1.00 E-value=1 Score=556.28 Aligned_cols=358 Identities=37% Similarity=0.641 Sum_probs=330.4
Q ss_pred CCCCCC-CCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEECCCEEEEEECCC-C
Q ss_conf 357788-74223889949998389999734898887773356555677836723468898799996487599998499-1
Q 002677 255 SSSQGS-GHDDGDALGDVFIWGEGTGDGVLGGGLNRVGSCFGVKMDSSLPKALESAVVLDVQNIACGGRHAALVNKQG-E 332 (893)
Q Consensus 255 ~~s~g~-~~~~~~s~G~Vy~WG~n~~~GqLG~g~~~~~~~~~~~~~~~~P~~i~~~~~~~V~~Ia~G~~ht~~lt~~G-~ 332 (893)
..+.|. |.++++++|.||+||.|. +||||.+. ..+...|.++..+...+|++|+||..|+++|+++| +
T Consensus 20 ~ia~G~~hs~al~~~g~v~~wG~n~-~GqLG~g~---------~~~~~~P~~v~~l~~~~i~~va~G~~ht~al~~~gg~ 89 (406)
T 4d9s_A 20 IISAGASHSVALLSGDIVCSWGRGE-DGQLGHGD---------AEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGME 89 (406)
T ss_dssp EEEECSSEEEEEETTTEEEEEECCT-TSTTCSSS---------CCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTTTE
T ss_pred EEECCCCEEEEEEECCEEEEEECCC-CCCCCCCC---------CCCCCCCEEECCCCCCCEEEEEECCCEEEEEECCCCE
T ss_conf 9961879099998299899986999-98889798---------6557388782246899789998284508999888998
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEECCCEEEEEECCCCEEECCCCCCCCCCCCCCCCCCEEEEEEE
Q ss_conf 99993899997678899774334784036898389997079569999838989991999889874589998414421364
Q 002677 333 VFSWGEESGGRLGHGVDSDVLHPKLIDALSNMNIELVACGEYHTCAVTLSGDLYTWGDGTYNFGLLGHGNEVSHWVPKRV 412 (893)
Q Consensus 333 Vy~wG~n~~GqLG~g~~~~~~~P~~V~~l~~~~I~~Ia~G~~ht~aLT~dG~Vy~wG~n~~~~GqLG~g~~~~~~~P~~V 412 (893)
||+||.|.+||||++...+...|.++..+.+.+|++|+||.+|+++|+++|+||+||.| ..||||.+.......|.++
T Consensus 90 v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~ia~G~~h~~alt~~G~v~~wG~n--~~GqLG~g~~~~~~~p~~v 167 (406)
T 4d9s_A 90 VYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRN--QNGQLGLGDTEDSLVPQKI 167 (406)
T ss_dssp EEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECC--TTSTTCSSSCCCEEEEEEC
T ss_pred EEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEECHHHEEEECCCCCEEEECCC--CCCCCCCCCCCCCCCCEEE
T ss_conf 99975998868998998764610684146899889999770465897389859990799--8754779898775523574
Q ss_pred CCCCCCCEEEEEEECCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCEEEECCCCCEEEEEEECCCEEEEEEEEEEC
Q ss_conf 48999960999862797279990598099820699865689999653345455215898399998279647999985314
Q 002677 413 NGPLEGIHVSSISCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRKSVSIPREVESLKGLRTVRAACGVWHTAAVVEVMVG 492 (893)
Q Consensus 413 ~~~l~g~~I~~Ia~G~~Ht~alt~~G~vy~wG~n~~GQLG~g~~~~~~~P~~V~~l~~~~V~~VacG~~ht~aite~~~~ 492 (893)
.. +.+.+|++|+||.+|+++|+++|+||+||.|.+||||+++......|.++..+.+.+|++|+||.+|+++|+
T Consensus 168 ~~-~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~G~~ht~~l~----- 241 (406)
T 4d9s_A 168 QA-FEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVS----- 241 (406)
T ss_dssp GG-GTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEECSSEEEEEE-----
T ss_pred CC-CCCCCEEEEECCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEEECCCCEEEEC-----
T ss_conf 35-689738999647873999947998898417988877889987768627840368962999997898189994-----
Q ss_pred CCCCCCCCCCCEEEEECCCCCCCCCCCCCCEEECEEEECCCCCCEEEEECCCCEEEEEECCCCEEEECCCCCCCCCCCCC
Q ss_conf 88864368992999938999976899987513108850147896355413786899996499199990999886799999
Q 002677 493 NSSSSNCSSGKLFTWGDGDKGRLGHGDKEAKLVPTCVAALVEPNFCRVACGHSLTVALTTSGHVYTMGSPVYGQLGNPQA 572 (893)
Q Consensus 493 ~~~~~~~~~G~Ly~WG~n~~GqLG~g~~~~~~~P~~V~~l~~~~I~~Ia~G~~htiaLt~dG~Vy~wG~N~~GQLG~~~~ 572 (893)
.+|+||+||.|.+||||+++......|+++..+.+..|++|+||.+|+++|+++|+||+||.|.+||||.+..
T Consensus 242 -------~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~v~~i~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~ 314 (406)
T 4d9s_A 242 -------YSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNN 314 (406)
T ss_dssp -------TTCCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSS
T ss_pred -------CCCCEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEECCCEEEEECCCCEEEEEECCCCCCCCCCCC
T ss_conf -------8998899638998878999876750567823258998899984678799995999099933899888878998
Q ss_pred CCC-CCCEECCCCCCCCEEEEEECCCEEEEEECCCEEEEECCCCCCCCCCCCCCCCCCCEEECCCCC
Q ss_conf 998-670211456788669999667802787059969996189999789999999866679522579
Q 002677 573 DGK-LPNRVEGKLSKSFVEEIACGSYHVAVLTSKTEVYTWGKGANGRLGHGDTDDRNSPSLVEALKD 638 (893)
Q Consensus 573 ~~~-~P~~v~~~l~~~~V~~Is~G~~Ht~aLt~~G~Vy~WG~n~~GQLG~g~~~~~~~P~~V~~l~~ 638 (893)
... .|..+.. +....|++|+||.+|+++|+++|+||+||.|.+||||+|+..++..|++|+.+..
T Consensus 315 ~~~~~p~~v~~-~~~~~v~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~ 380 (406)
T 4d9s_A 315 LDQCSPVQVRF-PDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKIIEALSV 380 (406)
T ss_dssp SCEEEEEEECC-GGGCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECGGGCS
T ss_pred CCCCCCEEEEC-CCCCCEEEEEECCCEEEEEECCCCEEEECCCCCCCCCCCCCCCCCCCEEEEEECC
T ss_conf 77746779732-6798589999289949999489978996599888668999877738878500267
No 3
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=547.40 Aligned_cols=372 Identities=23% Similarity=0.385 Sum_probs=318.3
Q ss_pred CCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCC--CCCCEEEEEECCCEEEEEECCCCEEEEEC
Q ss_conf 7422388994999838999973489888777335655567783672346--88987999964875999984991999938
Q 002677 261 GHDDGDALGDVFIWGEGTGDGVLGGGLNRVGSCFGVKMDSSLPKALESA--VVLDVQNIACGGRHAALVNKQGEVFSWGE 338 (893)
Q Consensus 261 ~~~~~~s~G~Vy~WG~n~~~GqLG~g~~~~~~~~~~~~~~~~P~~i~~~--~~~~V~~Ia~G~~ht~~lt~~G~Vy~wG~ 338 (893)
+.+.++.+|+||+||.|. .||||+|.... ..+...|+.++.+ ...+|++|+||..|+++|+++|+||+||.
T Consensus 21 h~~~~~~~g~v~~wG~n~-~GqLG~G~~~~------~~~~~~P~~~~~~~~~~~~i~~va~G~~Ht~alt~~G~v~~wG~ 93 (473)
T 3of7_A 21 HMYLSVQPLDIFCWGTGS-MCELGLGPLAK------NKEVKRPRLNPFLPRDEAKIISFAVGGMHTLALDEESNVWSWGC 93 (473)
T ss_dssp HHHCCSSCCEEEEEEECT-TSTTCSCSCGG------GGEEEEEEECTTSCTTTTCEEEEEECSSEEEEEETTCCEEEEEC
T ss_pred CCCCCCCCCCEEEECCCC-CCCCCCCCCCC------CCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEECCCEEEEEEC
T ss_conf 102678876589981898-87369897766------64455762155455577878999707876999916984999689
Q ss_pred CCCCCCCCCCCCC-----------------------CCCCEEECC--C----CCCCEEEEEECCCEEEEEECCCCEEECC
Q ss_conf 9999767889977-----------------------433478403--6----8983899970795699998389899919
Q 002677 339 ESGGRLGHGVDSD-----------------------VLHPKLIDA--L----SNMNIELVACGEYHTCAVTLSGDLYTWG 389 (893)
Q Consensus 339 n~~GqLG~g~~~~-----------------------~~~P~~V~~--l----~~~~I~~Ia~G~~ht~aLT~dG~Vy~wG 389 (893)
|.+||||++.... ...|.+|.. + .+.+|++|+||.+|+++|+++|+||+||
T Consensus 94 n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~l~~~~~~~~i~~va~G~~hs~alt~~G~vy~wG 173 (473)
T 3of7_A 94 NDVGALGRDTSNAKEQLKDMDADDSSDDEDGDLNELESTPAKIPRESFPPLAEGHKVVQLAATDNMSCALFSNGEVYAWG 173 (473)
T ss_dssp CTTSTTCSCCC---------------------CCHHHHSCEECCGGGCHHHHTTCCEEEEEECSSEEEEEETTSCEEEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCEEEEECCCCEEEEEECCCEEEEEE
T ss_conf 98888999886533332345655567543344463346750134345775458981899982688799994898499946
Q ss_pred CCCCCCCCCCCCCC--CCEEEEEEECCCCCCCEEEEEEECCCEEEEEECCCEEEEEECCCCCCCCCCCCCC----CCCCE
Q ss_conf 99889874589998--4144213644899996099986279727999059809982069986568999965----33454
Q 002677 390 DGTYNFGLLGHGNE--VSHWVPKRVNGPLEGIHVSSISCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRKS----VSIPR 463 (893)
Q Consensus 390 ~n~~~~GqLG~g~~--~~~~~P~~V~~~l~g~~I~~Ia~G~~Ht~alt~~G~vy~wG~n~~GQLG~g~~~~----~~~P~ 463 (893)
.|.+..||||.+.. .....|.+|.. +.+.+|++|+||..|+++|+++|+||+||.|.+||||++.... ...|.
T Consensus 174 ~n~~~~GqLG~~~~~~~~~~~P~~v~~-l~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~p~ 252 (473)
T 3of7_A 174 TFRCNEGILGFYQDKIKIQKTPWKVPT-FSKYNIVQLAPGKDHILFLDEEGMVFAWGNGQQNQLGRKVMERFRLKTLDPR 252 (473)
T ss_dssp CEEETTEEEESBTTTBSCEEEEEECCC-CCSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCCGGGTTTTCSCE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCEECCC-CCCCCEEEEEECCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCE
T ss_conf 996898754888877741447677552-4788879999637838999179929997699888889884454333543752
Q ss_pred EEECCCCCEEEEEEECCCEEEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCCC----CEEECEEEECCCCCCEEE
Q ss_conf 5521589839999827964799998531488864368992999938999976899987----513108850147896355
Q 002677 464 EVESLKGLRTVRAACGVWHTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDKE----AKLVPTCVAALVEPNFCR 539 (893)
Q Consensus 464 ~V~~l~~~~V~~VacG~~ht~aite~~~~~~~~~~~~~G~Ly~WG~n~~GqLG~g~~~----~~~~P~~V~~l~~~~I~~ 539 (893)
.+.. .+|++|+||.+|++||+ .+|+||+||.|.+||||++... ....|+.|..+.+.+|++
T Consensus 253 ~~~~---~~v~~Ia~G~~hs~alt------------~~G~v~~wG~n~~GqlG~~~~~~~~~~~~~P~~v~~~~~~~i~~ 317 (473)
T 3of7_A 253 PFGL---RHVKYIASGENHCFALT------------KDNKLVSWGLNQFGQCGVSEDVEDGALVTKPKRLALPDNVVIRS 317 (473)
T ss_dssp ECSC---CSEEEEEECSSEEEEEE------------TTSCEEEEEECTTSTTCCCSCCCTTCEEEEEEECCCCTTCCEEE
T ss_pred ECCC---CCEEEEECCCCEEEEEE------------CCCCEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCEEE
T ss_conf 1277---66389954897589991------------69988993789898858887656884454132125567863899
Q ss_pred EECCCCEEEEEECCCCEEEECCCCCCCCCCCCCCC---------------CCCCEECCCCCCCCEEEEEECCCEEEEEEC
Q ss_conf 41378689999649919999099988679999999---------------867021145678866999966780278705
Q 002677 540 VACGHSLTVALTTSGHVYTMGSPVYGQLGNPQADG---------------KLPNRVEGKLSKSFVEEIACGSYHVAVLTS 604 (893)
Q Consensus 540 Ia~G~~htiaLt~dG~Vy~wG~N~~GQLG~~~~~~---------------~~P~~v~~~l~~~~V~~Is~G~~Ht~aLt~ 604 (893)
|+||.+|+++|+++|+||+||.|.+||||.+.... ..|..+... ..|++|+||.+|+++|++
T Consensus 318 ia~G~~hs~~lt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~---~~v~~Ia~G~~hs~al~~ 394 (473)
T 3of7_A 318 IAAGEHHSLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNNV---PKFKSVAAGSHHSVAVAQ 394 (473)
T ss_dssp EEECSSEEEEEETTSCEEEEEECTTCTTCCCGGGCCTTCEECTTSCEEEEEEEEECCSS---CCEEEEEECSSEEEEEET
T ss_pred EEECCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCC---CCEEEEEECCCEEEEEEC
T ss_conf 98678869999389829998789987418884446653100457860262167004787---753799857876999968
Q ss_pred CCEEEEECCCCCCCCCCCC-CCCCCCCEEEC--CCCCCCEEEECCCCCCCCEEEEEE
Q ss_conf 9969996189999789999-99986667952--257995999704787321065310
Q 002677 605 KTEVYTWGKGANGRLGHGD-TDDRNSPSLVE--ALKDKQVKSIACGTNFTAAICLHK 658 (893)
Q Consensus 605 ~G~Vy~WG~n~~GQLG~g~-~~~~~~P~~V~--~l~~~~V~~IacG~~hT~ai~~~k 658 (893)
+|+||+||.|.+||||+|+ ..+...|++|+ .+.+++|+.|+||..||+++..+.
T Consensus 395 ~G~vy~wG~n~~GqLG~g~~~~~~~~P~~v~~~~~~~~~v~~v~cG~~~s~~~~~~~ 451 (473)
T 3of7_A 395 NGIAYSWGFGETYAVGLGPFEDDTEVPTRIKNTATQDHNIILVGCGGQFSVSGGVKL 451 (473)
T ss_dssp TSCEEEEECCTTCTTCCCSCCSCEEEEEECCCTTTTTEEEEEEEECSSEEEEEEEEC
T ss_pred CCCEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCEEEEEEECCCEEEEEEECC
T ss_conf 984899628989888799977656378482256668972899951888599997447
No 4
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=1.00 E-value=1 Score=540.48 Aligned_cols=366 Identities=27% Similarity=0.490 Sum_probs=319.3
Q ss_pred CCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEECCCEEEEEECCCCEEEEECC
Q ss_conf 87422388994999838999973489888777335655567783672346889879999648759999849919999389
Q 002677 260 SGHDDGDALGDVFIWGEGTGDGVLGGGLNRVGSCFGVKMDSSLPKALESAVVLDVQNIACGGRHAALVNKQGEVFSWGEE 339 (893)
Q Consensus 260 ~~~~~~~s~G~Vy~WG~n~~~GqLG~g~~~~~~~~~~~~~~~~P~~i~~~~~~~V~~Ia~G~~ht~~lt~~G~Vy~wG~n 339 (893)
.|.++++.+|+||+||.|. .||||.|... .+...|+.+... .+|++|+||..|+++|+++|+||+||.|
T Consensus 18 ~h~~~l~~~g~v~~wG~n~-~GqLG~g~~~--------~~~~~P~~v~~~--~~i~~va~G~~hs~~l~~~G~v~~wG~n 86 (413)
T 1a12_A 18 SHRSHSTEPGLVLTLGQGD-VGQLGLGENV--------MERKKPALVSIP--EDVVQAEAGGMHTVCLSKSGQVYSFGCN 86 (413)
T ss_dssp CCTTCCCCCBEEEEEEECT-TSTTCSCTTC--------CEEEEEEEECCS--SCEEEEEECSSEEEEEETTSCEEEEECC
T ss_pred CCCEEECCCCCEEEEECCC-CCCCCCCCCC--------CCCCCCEECCCC--CCEEEEEECCCEEEEECCCCCEEEEECC
T ss_conf 4204006898689977898-9837989986--------430465671688--9869998677758999479989998899
Q ss_pred CCCCCCCCCCC--CCCCCEEECCCCCCCEEEEEECCCEEEEEECCCCEEECCC--CCCCCCCCCCCCCCC-EEEEEEECC
Q ss_conf 99976788997--7433478403689838999707956999983898999199--988987458999841-442136448
Q 002677 340 SGGRLGHGVDS--DVLHPKLIDALSNMNIELVACGEYHTCAVTLSGDLYTWGD--GTYNFGLLGHGNEVS-HWVPKRVNG 414 (893)
Q Consensus 340 ~~GqLG~g~~~--~~~~P~~V~~l~~~~I~~Ia~G~~ht~aLT~dG~Vy~wG~--n~~~~GqLG~g~~~~-~~~P~~V~~ 414 (893)
.+||||++... ....|.+|.. . .+|++|+||.+|+++|+++|+||+||. | ..||||.+.... ...|.+|.
T Consensus 87 ~~GqLG~~~~~~~~~~~P~~v~l-~-~~i~~va~G~~hs~alt~~G~v~~wG~~~n--~~GqlG~~~~~~~~~~P~~v~- 161 (413)
T 1a12_A 87 DEGALGRDTSVEGSEMVPGKVEL-Q-EKVVQVSAGDSHTAALTDDGRVFLWGSFRD--NNGVIGLLEPMKKSMVPVQVQ- 161 (413)
T ss_dssp TTSTTCSCCCSTTGGGSCEECCC-C-SCEEEEEECSSEEEEEETTSCEEEEECEEE--TTEEEESSBBTBCEEEEEEEC-
T ss_pred CCCCCCCCCCCCCCCCCCEEECC-C-CCEEEEECCCCEEEEECCCCCEEEEECCCC--CCCCCCCCCCCCCCCCCEEEC-
T ss_conf 98877988888753458747538-8-758999668873799848994899437768--998637678664466787961-
Q ss_pred CCCCCEEEEEEECCCEEEEEECCCEEEEEECCCCCCCCCCCCC-----------CCCCCEEEECC-----CCCEEEEEEE
Q ss_conf 9999609998627972799905980998206998656899996-----------53345455215-----8983999982
Q 002677 415 PLEGIHVSSISCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRK-----------SVSIPREVESL-----KGLRTVRAAC 478 (893)
Q Consensus 415 ~l~g~~I~~Ia~G~~Ht~alt~~G~vy~wG~n~~GQLG~g~~~-----------~~~~P~~V~~l-----~~~~V~~Vac 478 (893)
...+|++|+||.+|+++|+++|+||+||.|.+||||++... ....|+.+... ...+|++|+|
T Consensus 162 --~~~~i~~ia~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~P~~v~~~~~g~~~~~~i~~ia~ 239 (413)
T 1a12_A 162 --LDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFC 239 (413)
T ss_dssp --CSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCGGGTSSSCGGGGHHHHHSCEECCCBCSSCCSBCCEEEEEE
T ss_pred --CCCCEEEEEECCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCEEEEEE
T ss_conf --899779998467618998589988983389888668875333455554553224467457631456667854899970
Q ss_pred CCCEEEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCCCCEEECEEEECCCC--CCEEEEECCCCEEEEEECCCCE
Q ss_conf 79647999985314888643689929999389999768999875131088501478--9635541378689999649919
Q 002677 479 GVWHTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDKEAKLVPTCVAALVE--PNFCRVACGHSLTVALTTSGHV 556 (893)
Q Consensus 479 G~~ht~aite~~~~~~~~~~~~~G~Ly~WG~n~~GqLG~g~~~~~~~P~~V~~l~~--~~I~~Ia~G~~htiaLt~dG~V 556 (893)
|.+|+++|+ .+|+||+||.|.+||||+++......|+.|..+.+ ..|++|+||.+|+++|+++|+|
T Consensus 240 G~~hs~alt------------~~G~v~~wG~n~~gqLG~~~~~~~~~P~~v~~l~~~~~~v~~ia~G~~hs~al~~~G~v 307 (413)
T 1a12_A 240 GAYFTFAIS------------HEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKA 307 (413)
T ss_dssp ETTEEEEEE------------TTCCEEEEECCTTSTTSCSSCSCEEEEEECGGGCCTTCCEEEEEECSSEEEEEETTSCE
T ss_pred CCCEEEEEE------------CCCCEEEEECCCCCCCCCCCCCCCCCCEECHHCCCCCCEEEEEECCCCEEEEEECCCCE
T ss_conf 788799996------------89979998499876777999876356677010158873299995052458999079989
Q ss_pred EEECCCCCCCCCCCCCC--CCCCCEECCCCCCCCEEEEEECCCEEEEEECCCEEEEECCCCCCCCCCCCCCCCCCCEEEC
Q ss_conf 99909998867999999--9867021145678866999966780278705996999618999978999999986667952
Q 002677 557 YTMGSPVYGQLGNPQAD--GKLPNRVEGKLSKSFVEEIACGSYHVAVLTSKTEVYTWGKGANGRLGHGDTDDRNSPSLVE 634 (893)
Q Consensus 557 y~wG~N~~GQLG~~~~~--~~~P~~v~~~l~~~~V~~Is~G~~Ht~aLt~~G~Vy~WG~n~~GQLG~g~~~~~~~P~~V~ 634 (893)
|+||.|.+||||.+... ...|..+... ..|++|+||.+|+++|+++|+||+||.|.+||||+++..+...|++|.
T Consensus 308 ~~wG~n~~GqLG~g~~~~~~~~P~~v~~l---~~v~~v~~G~~hs~alt~~G~v~~wG~n~~gqLG~g~~~~~~~P~~v~ 384 (413)
T 1a12_A 308 YSLGRAEYGRLGLGEGAEEKSIPTLISRL---PAVSSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDEDAWSPVEMM 384 (413)
T ss_dssp EEEECCGGGTTCSCTTCCCEEEEEECCSS---SSEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCSCEEEEEECC
T ss_pred EEEECCCCCCCCCCCCCCCCCCCEEECCC---CCEEEEEECCCEEEEEECCCCEEEECCCCCCCCCCCCCCCCCCCEECC
T ss_conf 98648988866899988636677792266---762599977564799948997899228989878799988755374854
Q ss_pred C--CCCCCEEEECCCCCCCCEEEEEE
Q ss_conf 2--57995999704787321065310
Q 002677 635 A--LKDKQVKSIACGTNFTAAICLHK 658 (893)
Q Consensus 635 ~--l~~~~V~~IacG~~hT~ai~~~k 658 (893)
. +.+.+|.+|+||.+||++|+...
T Consensus 385 ~~~~~~~~v~~v~~G~~ht~~l~~~g 410 (413)
T 1a12_A 385 GKQLENRVVLSVSSGGQHTVLLVKDK 410 (413)
T ss_dssp STTTTTEEEEEEEECSSEEEEEEEEC
T ss_pred CCCCCCCEEEEEEECCCCEEEEEECC
T ss_conf 55658986999955788289998168
No 5
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=1.00 E-value=1 Score=539.23 Aligned_cols=369 Identities=25% Similarity=0.407 Sum_probs=322.3
Q ss_pred CCCCC-CCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEECCCEEEEEECCCCEE
Q ss_conf 57788-74223889949998389999734898887773356555677836723468898799996487599998499199
Q 002677 256 SSQGS-GHDDGDALGDVFIWGEGTGDGVLGGGLNRVGSCFGVKMDSSLPKALESAVVLDVQNIACGGRHAALVNKQGEVF 334 (893)
Q Consensus 256 ~s~g~-~~~~~~s~G~Vy~WG~n~~~GqLG~g~~~~~~~~~~~~~~~~P~~i~~~~~~~V~~Ia~G~~ht~~lt~~G~Vy 334 (893)
.+.|. +.++++.+|+||+||.|. .||||.|.+. .+...|.+++.+. +|++|+||..|+++|+++|+||
T Consensus 29 ia~g~~~~~~l~~~G~v~~wG~n~-~GqLG~g~~~--------~~~~~p~~v~~l~--~v~~va~G~~h~~~l~~~G~v~ 97 (423)
T 3mvd_K 29 IAFHLELPKRRTVLGNVLVCGNGD-VGQLGLGEDI--------LERKRLSPVAGIP--DAVDISAGGMHNLVLTKSGDIY 97 (423)
T ss_dssp CCCCCCCCCCCCCCEEEEEEEECT-TSTTCSCSSC--------CEEEEEEECCSCS--SEEEEEECSSEEEEEETTSCEE
T ss_pred EECCCCCCEEECCCCCEEEEECCC-CCCCCCCCCC--------CCCCCCEECCCCC--CCEEEEECCCEEEEEECCCEEE
T ss_conf 863776533166997199986998-7778999987--------5676876756889--8449950789489995799499
Q ss_pred EEECCCCCCCCCCCCCC--CCCCEEECCCCCCCEEEEEECCCEEEEEECCCCEEECCC--CCCCCCCCCCCCCCCEEEEE
Q ss_conf 99389999767889977--433478403689838999707956999983898999199--98898745899984144213
Q 002677 335 SWGEESGGRLGHGVDSD--VLHPKLIDALSNMNIELVACGEYHTCAVTLSGDLYTWGD--GTYNFGLLGHGNEVSHWVPK 410 (893)
Q Consensus 335 ~wG~n~~GqLG~g~~~~--~~~P~~V~~l~~~~I~~Ia~G~~ht~aLT~dG~Vy~wG~--n~~~~GqLG~g~~~~~~~P~ 410 (893)
+||.|.+||||++...+ ...|.+|.... +|++|+||.+|+++|+++|+||+||. | ..||||.+.......|.
T Consensus 98 ~wG~n~~GqLG~~~~~~~~~~~P~~v~~~~--~i~~va~G~~hs~al~~~G~v~~wG~~~n--~~GqlG~~~~~~~~~p~ 173 (423)
T 3mvd_K 98 SFGCNDEGALGRDTSEDGSESKPDLIDLPG--KALCISAGDSHSACLLEDGRVFAWGSFRD--SHGNMGLTIDGNKRTPI 173 (423)
T ss_dssp EEECCSSSTTCSCCCSTTSSSSCEECCCSS--CEEEEEECSSEEEEEETTSCEEEEECEEC--SSSEEESBTTBCEEEEE
T ss_pred EEECCCCCCCCCCCCCCCCCCCCEEECCCC--CEEEEECCCCEEEEEECCCEEEEEECCCC--CCCCCCCCCCCCCCEEE
T ss_conf 867899858999876786565775974799--78999848682899917996999769889--89986747788872346
Q ss_pred EECCCCCCCEEEEEEECCCEEEEEECCCEEEEEECCCCCCCCCCCCC-----------CCCCCEEEECCCCCEEEEEEEC
Q ss_conf 64489999609998627972799905980998206998656899996-----------5334545521589839999827
Q 002677 411 RVNGPLEGIHVSSISCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRK-----------SVSIPREVESLKGLRTVRAACG 479 (893)
Q Consensus 411 ~V~~~l~g~~I~~Ia~G~~Ht~alt~~G~vy~wG~n~~GQLG~g~~~-----------~~~~P~~V~~l~~~~V~~VacG 479 (893)
++ +.+.+|++|+||.+|+++|+++|+||+||.|.+||||++... ....|.++......+|..|+||
T Consensus 174 ~~---~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~v~~i~~g 250 (423)
T 3mvd_K 174 DL---MEGTVCCSIASGADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITRAKPFEAIWAT 250 (423)
T ss_dssp ES---STTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTTTTSSCEEECCTTCCCEEEEEEE
T ss_pred EE---CCCCCEEEEECCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEEC
T ss_conf 96---699858999538974999926980999627867854777643445433345333568768840688627999979
Q ss_pred CCEEEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCCC--CEEECEEEECCCCCCEEEEECCCCEEEEEECCCCEE
Q ss_conf 964799998531488864368992999938999976899987--513108850147896355413786899996499199
Q 002677 480 VWHTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDKE--AKLVPTCVAALVEPNFCRVACGHSLTVALTTSGHVY 557 (893)
Q Consensus 480 ~~ht~aite~~~~~~~~~~~~~G~Ly~WG~n~~GqLG~g~~~--~~~~P~~V~~l~~~~I~~Ia~G~~htiaLt~dG~Vy 557 (893)
.+|++++.. .+|+||+||.|.+||||++... ....|..+. ..+|++|+||.+|+++|+++|+||
T Consensus 251 ~~~~~~~~~-----------~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~---~~~v~~ia~G~~ht~alt~~G~v~ 316 (423)
T 3mvd_K 251 NYCTFMRES-----------QTQVIWATGLNNFKQLAHETKGKEFALTPIKTE---LKDIRHIAGGQHHTVILTTDLKCS 316 (423)
T ss_dssp TTEEEEEET-----------TTCCEEEEEECTTCTTSSCCTTCSEEEEEEEEC---CCSEEEEEECSSEEEEEETTCCEE
T ss_pred CCEEEEEEC-----------CCCEEEEEECCCCCCCCCCCCCCCEEEEEEECC---CCCEEEEECCCCEEEEEECCCCEE
T ss_conf 967999988-----------999499974999876799998874146448707---887489972467699995899399
Q ss_pred EECCCCCCCCCCCCCCCC--CCCEECCCCCCCCEEEEEECCCEEEEEECCCEEEEECCCCCCCCCCCCCCCCCCCEEECC
Q ss_conf 990999886799999998--670211456788669999667802787059969996189999789999999866679522
Q 002677 558 TMGSPVYGQLGNPQADGK--LPNRVEGKLSKSFVEEIACGSYHVAVLTSKTEVYTWGKGANGRLGHGDTDDRNSPSLVEA 635 (893)
Q Consensus 558 ~wG~N~~GQLG~~~~~~~--~P~~v~~~l~~~~V~~Is~G~~Ht~aLt~~G~Vy~WG~n~~GQLG~g~~~~~~~P~~V~~ 635 (893)
+||.|.+||||.+..... .|..+.. +.. .|++|+||.+|+++|+++|+||+||.|.+||||+|+..+...|++|..
T Consensus 317 ~wG~n~~GqLG~g~~~~~~~~p~~v~~-l~~-~v~~ia~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~ 394 (423)
T 3mvd_K 317 VVGRPEYGRLGLGDVKDVVEKPTIVKK-LTE-KIVSVGCGEVCSYAVTIDGKLYSWGSGVNNQLGVGDGDDELEPIVVVS 394 (423)
T ss_dssp EEECCGGGTTCSSSCCSCEEEEEECTT-CCS-CEEEEEEETTEEEEEETTSCEEEEECCTTSCSSSSSSCCEEEEEECCS
T ss_pred EEECCCCCCCCCCCCCCCCCCCEEECC-CCC-CEEEEECCCCEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCEEEEC
T ss_conf 997998888798986665468667214-799-779997689869999589988997999798987999978605769737
Q ss_pred --CCCCCEEEECCCCCCCCEEEEEE
Q ss_conf --57995999704787321065310
Q 002677 636 --LKDKQVKSIACGTNFTAAICLHK 658 (893)
Q Consensus 636 --l~~~~V~~IacG~~hT~ai~~~k 658 (893)
+.+++|.+|+||.+||++|+...
T Consensus 395 ~~~~~~~v~~va~G~~ht~~l~~~~ 419 (423)
T 3mvd_K 395 KNTQGKHMLLASGGGQHAIFLVKAD 419 (423)
T ss_dssp TTTTTCCEEEEEECSSEEEEEEECC
T ss_pred CCCCCCEEEEEEECCCCEEEEECCC
T ss_conf 6647978999977888289997166
No 6
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=1.00 E-value=1 Score=516.86 Aligned_cols=331 Identities=37% Similarity=0.657 Sum_probs=310.4
Q ss_pred CCCEEEEEECCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEECCCEEEEEECCC-CEEECC
Q ss_conf 8987999964875999984991999938999976788997743347840368983899970795699998389-899919
Q 002677 311 VLDVQNIACGGRHAALVNKQGEVFSWGEESGGRLGHGVDSDVLHPKLIDALSNMNIELVACGEYHTCAVTLSG-DLYTWG 389 (893)
Q Consensus 311 ~~~V~~Ia~G~~ht~~lt~~G~Vy~wG~n~~GqLG~g~~~~~~~P~~V~~l~~~~I~~Ia~G~~ht~aLT~dG-~Vy~wG 389 (893)
..+|++|+||..|+++|+++|+||+||.|.+||||++...+...|.++..+.+.+|++|+||.+|+++|+++| +||+||
T Consensus 15 ~~~v~~ia~G~~hs~al~~~g~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~va~G~~ht~al~~~gg~v~~wG 94 (406)
T 4d9s_A 15 PRKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSWG 94 (406)
T ss_dssp CCCEEEEEECSSEEEEEETTTEEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTTTEEEEEE
T ss_pred CCCEEEEECCCCEEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEECCCEEEEEECCCCEEEEEC
T ss_conf 66469996187909999829989998699998889798655738878224689978999828450899988899899975
Q ss_pred CCCCCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEEECCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCEEEECCC
Q ss_conf 99889874589998414421364489999609998627972799905980998206998656899996533454552158
Q 002677 390 DGTYNFGLLGHGNEVSHWVPKRVNGPLEGIHVSSISCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRKSVSIPREVESLK 469 (893)
Q Consensus 390 ~n~~~~GqLG~g~~~~~~~P~~V~~~l~g~~I~~Ia~G~~Ht~alt~~G~vy~wG~n~~GQLG~g~~~~~~~P~~V~~l~ 469 (893)
.| .+||||+++......|.++.. +.+.+|++|+||..|+++|+++|+||+||.|.+||||+++......|+++..+.
T Consensus 95 ~n--~~GqLG~g~~~~~~~p~~v~~-l~~~~i~~ia~G~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~ 171 (406)
T 4d9s_A 95 WG--DFGRLGHGNSSDLFTPLPIKA-LHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFE 171 (406)
T ss_dssp CC--GGGTTCSSSCCCEEEEEECGG-GTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECGGGT
T ss_pred CC--CCCCCCCCCCCCCCCCEEECC-CCCCCEEEEEECHHHEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCEEECCCC
T ss_conf 99--886899899876461068414-689988999977046589738985999079987547798987755235743568
Q ss_pred CCEEEEEEECCCEEEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCCCCEEECEEEECCCCCCEEEEECCCCEEEE
Q ss_conf 98399998279647999985314888643689929999389999768999875131088501478963554137868999
Q 002677 470 GLRTVRAACGVWHTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDKEAKLVPTCVAALVEPNFCRVACGHSLTVA 549 (893)
Q Consensus 470 ~~~V~~VacG~~ht~aite~~~~~~~~~~~~~G~Ly~WG~n~~GqLG~g~~~~~~~P~~V~~l~~~~I~~Ia~G~~htia 549 (893)
+.+|++|+||.+|+++|+ .+|+||+||.|.+||||+++......|.++..+...+|++|+||.+|+++
T Consensus 172 ~~~i~~va~G~~hs~alt------------~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~G~~ht~~ 239 (406)
T 4d9s_A 172 GIRIKMVAAGAEHTAAVT------------EDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTIS 239 (406)
T ss_dssp TCCEEEEEECSSEEEEEE------------TTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEECSSEEEE
T ss_pred CCCEEEEECCCCEEEEEE------------CCCCEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEEECCCCEEE
T ss_conf 973899964787399994------------79988984179888778899877686278403689629999978981899
Q ss_pred EECCCCEEEECCCCCCCCCCCCCCC-CCCCEECCCCCCCCEEEEEECCCEEEEEECCCEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 9649919999099988679999999-867021145678866999966780278705996999618999978999999986
Q 002677 550 LTTSGHVYTMGSPVYGQLGNPQADG-KLPNRVEGKLSKSFVEEIACGSYHVAVLTSKTEVYTWGKGANGRLGHGDTDDRN 628 (893)
Q Consensus 550 Lt~dG~Vy~wG~N~~GQLG~~~~~~-~~P~~v~~~l~~~~V~~Is~G~~Ht~aLt~~G~Vy~WG~n~~GQLG~g~~~~~~ 628 (893)
|+.+|+||+||.|.+||||.+.... ..|..+.. +.+..|++|+||.+|+++|+++|+||+||.|.+||||+++..+..
T Consensus 240 l~~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~-~~~~~v~~i~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~ 318 (406)
T 4d9s_A 240 VSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEA-LSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQC 318 (406)
T ss_dssp EETTCCEEEEECCTTSTTCSSSCCCEEEEEECGG-GTTSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSSCEE
T ss_pred ECCCCCEEEEECCCCCCCCCCCCCCCCCCEEECC-CCCCCEEEEEECCCEEEEECCCCEEEEEECCCCCCCCCCCCCCCC
T ss_conf 9489988996389988789998767505678232-589988999846787999959990999338998888789987774
Q ss_pred CCEEECCCCCCCEEEECCCCCCCCEEEEE
Q ss_conf 66795225799599970478732106531
Q 002677 629 SPSLVEALKDKQVKSIACGTNFTAAICLH 657 (893)
Q Consensus 629 ~P~~V~~l~~~~V~~IacG~~hT~ai~~~ 657 (893)
.|++|..+.+.+|++|+||.+|++||+..
T Consensus 319 ~p~~v~~~~~~~v~~va~G~~hs~alt~~ 347 (406)
T 4d9s_A 319 SPVQVRFPDDQKVVQVSCGWRHTLAVTER 347 (406)
T ss_dssp EEEEECCGGGCCEEEEEECSSEEEEEETT
T ss_pred CCEEEECCCCCCEEEEEECCCEEEEEECC
T ss_conf 67797326798589999289949999489
No 7
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=1.00 E-value=1 Score=486.54 Aligned_cols=327 Identities=35% Similarity=0.592 Sum_probs=221.2
Q ss_pred EEEECCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEECCCEEEEEECCCCEEECCCCCCCC
Q ss_conf 99964875999984991999938999976788997743347840368983899970795699998389899919998898
Q 002677 316 NIACGGRHAALVNKQGEVFSWGEESGGRLGHGVDSDVLHPKLIDALSNMNIELVACGEYHTCAVTLSGDLYTWGDGTYNF 395 (893)
Q Consensus 316 ~Ia~G~~ht~~lt~~G~Vy~wG~n~~GqLG~g~~~~~~~P~~V~~l~~~~I~~Ia~G~~ht~aLT~dG~Vy~wG~n~~~~ 395 (893)
++..-..+.++|+.+|+||+||.|.+||||.+...+...|+++..+...+|++|+||.+|+++|+++|+||+||.| ..
T Consensus 5 ~~~~~~~~~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~l~~~G~v~~wG~n--~~ 82 (389)
T 3kci_A 5 HHHSSGRENLYFQGSGTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGYG--AG 82 (389)
T ss_dssp ----------------CEEEEEECTTSTTSSCSCSEEEEEEECHHHHHTCEEEEEEETTEEEEEETTSCEEEEECC--GG
T ss_pred CCCCCCCCCEEECCCCEEEEEECCCCCCCCCCCCCCCCCCEECCCCCCCCEEEEEECCCEEEEECCCCCEEEEECC--CC
T ss_conf 4465743226688998699703899751898968664277760134678659998477739999589819998899--99
Q ss_pred CCCCCCCCCCEEEEEEECCCCC-CCEEEEEEECCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCEEEECCCCCEEE
Q ss_conf 7458999841442136448999-960999862797279990598099820699865689999653345455215898399
Q 002677 396 GLLGHGNEVSHWVPKRVNGPLE-GIHVSSISCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRKSVSIPREVESLKGLRTV 474 (893)
Q Consensus 396 GqLG~g~~~~~~~P~~V~~~l~-g~~I~~Ia~G~~Ht~alt~~G~vy~wG~n~~GQLG~g~~~~~~~P~~V~~l~~~~V~ 474 (893)
||||.+.......|.++..... ..++++|+||..|+++|+++|+||+||.|.+||||+++......|+.++.+.+.+|+
T Consensus 83 GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~ 162 (389)
T 3kci_A 83 GRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVV 162 (389)
T ss_dssp GTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEE
T ss_pred CCCCCCCCCCCCCCEECCCCCCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCEEE
T ss_conf 88898996773377771101577325999876877499994899799972998986789987567587684366897399
Q ss_pred EEEECCCEEEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCCCCEEECEEEECCCCCCEEEEECCC--CEEEEEEC
Q ss_conf 9982796479999853148886436899299993899997689998751310885014789635541378--68999964
Q 002677 475 RAACGVWHTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDKEAKLVPTCVAALVEPNFCRVACGH--SLTVALTT 552 (893)
Q Consensus 475 ~VacG~~ht~aite~~~~~~~~~~~~~G~Ly~WG~n~~GqLG~g~~~~~~~P~~V~~l~~~~I~~Ia~G~--~htiaLt~ 552 (893)
+|+||.+|+++|+ .+|+||+||.|.+||||+++......|+.+..+.+.+|++|+||. .|+++|++
T Consensus 163 ~va~G~~hs~alt------------~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~~ 230 (389)
T 3kci_A 163 DVAAGGAHSACVT------------AAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTD 230 (389)
T ss_dssp EEEECSSEEEEEE------------TTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSSCEEEEEET
T ss_pred EEEECCCEEEEEE------------CCCEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEEECCCCCEEEEECC
T ss_conf 9971758589994------------8980899489988876899986604556850458983999997689858999905
Q ss_pred CCCEEEECCCCCCCCCCCCCCC-CCCCEECCCCCCCCEEEEEECCCEEEEEECCCEEEEECCCCCCCCCCCCCCCCCCCE
Q ss_conf 9919999099988679999999-867021145678866999966780278705996999618999978999999986667
Q 002677 553 SGHVYTMGSPVYGQLGNPQADG-KLPNRVEGKLSKSFVEEIACGSYHVAVLTSKTEVYTWGKGANGRLGHGDTDDRNSPS 631 (893)
Q Consensus 553 dG~Vy~wG~N~~GQLG~~~~~~-~~P~~v~~~l~~~~V~~Is~G~~Ht~aLt~~G~Vy~WG~n~~GQLG~g~~~~~~~P~ 631 (893)
+|+||+||.|.+||||.+.... ..|..+.. +.+..|++|+||.+|+++|+++|+||+||.|.+||||+++..+...|+
T Consensus 231 ~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~-~~~~~v~~v~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~ 309 (389)
T 3kci_A 231 DDTVWSWGDGDYGKLGRGGSDGCKVPMKIDS-LTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPR 309 (389)
T ss_dssp TTEEEEEECCGGGTTSSSSCCCEEEEEECGG-GTTSCEEEEEEETTEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEE
T ss_pred CCEEEEEECCCCCCCCCCCCCCCCCCEEECC-CCCCCEEEEECCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCE
T ss_conf 9979997399888779899888544679546-689967999479987999958993999858999888899986620875
Q ss_pred EECCCCCCCEEEECCCCCCCCEEEEE
Q ss_conf 95225799599970478732106531
Q 002677 632 LVEALKDKQVKSIACGTNFTAAICLH 657 (893)
Q Consensus 632 ~V~~l~~~~V~~IacG~~hT~ai~~~ 657 (893)
+|+.+.+.+|++|+||.+|+++|+..
T Consensus 310 ~v~~l~~~~v~~ia~G~~h~~al~~~ 335 (389)
T 3kci_A 310 QVQGLQGKKVIAIATGSLHCVCCTED 335 (389)
T ss_dssp ECGGGTTCCEEEEEECSSEEEEEETT
T ss_pred EECCCCCCCEEEEEECCCEEEEECCC
T ss_conf 85147999889999445709999899
No 8
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=1.00 E-value=1 Score=471.70 Aligned_cols=322 Identities=23% Similarity=0.356 Sum_probs=279.5
Q ss_pred CCEEEEEECCCEEEEEECCCCEEEEECCCCCCCCCCCC-CCCCCCEEECCCCCCCEEEEEECCCEEEEEECCCCEEECCC
Q ss_conf 98799996487599998499199993899997678899-77433478403689838999707956999983898999199
Q 002677 312 LDVQNIACGGRHAALVNKQGEVFSWGEESGGRLGHGVD-SDVLHPKLIDALSNMNIELVACGEYHTCAVTLSGDLYTWGD 390 (893)
Q Consensus 312 ~~V~~Ia~G~~ht~~lt~~G~Vy~wG~n~~GqLG~g~~-~~~~~P~~V~~l~~~~I~~Ia~G~~ht~aLT~dG~Vy~wG~ 390 (893)
.++++|+||..|+++++++|+||+||.|.+||||++.. .....|.+|..+. .|++|+||.+|+++|+++|+||+||.
T Consensus 24 ~~~~~ia~g~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~--~v~~va~G~~h~~~l~~~G~v~~wG~ 101 (423)
T 3mvd_K 24 AKRARIAFHLELPKRRTVLGNVLVCGNGDVGQLGLGEDILERKRLSPVAGIP--DAVDISAGGMHNLVLTKSGDIYSFGC 101 (423)
T ss_dssp -----CCCCCCCCCCCCCCEEEEEEEECTTSTTCSCSSCCEEEEEEECCSCS--SEEEEEECSSEEEEEETTSCEEEEEC
T ss_pred CEEEEEECCCCCCEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCEECCCCC--CCEEEEECCCEEEEEECCCEEEEEEC
T ss_conf 2036886377653316699719998699877789999875676876756889--84499507894899957994998678
Q ss_pred CCCCCCCCCCCCCCC--EEEEEEECCCCCCCEEEEEEECCCEEEEEECCCEEEEEEC--CCCCCCCCCCCCCCCCCEEEE
Q ss_conf 988987458999841--4421364489999609998627972799905980998206--998656899996533454552
Q 002677 391 GTYNFGLLGHGNEVS--HWVPKRVNGPLEGIHVSSISCGPWHTAVVTSAGQLFTFGD--GTFGVLGHGDRKSVSIPREVE 466 (893)
Q Consensus 391 n~~~~GqLG~g~~~~--~~~P~~V~~~l~g~~I~~Ia~G~~Ht~alt~~G~vy~wG~--n~~GQLG~g~~~~~~~P~~V~ 466 (893)
| ..||||++.... ...|.+|.. ..+|++|+||..|+++|+++|+||+||. |.+||||++.......|.++
T Consensus 102 n--~~GqLG~~~~~~~~~~~P~~v~~---~~~i~~va~G~~hs~al~~~G~v~~wG~~~n~~GqlG~~~~~~~~~p~~~- 175 (423)
T 3mvd_K 102 N--DEGALGRDTSEDGSESKPDLIDL---PGKALCISAGDSHSACLLEDGRVFAWGSFRDSHGNMGLTIDGNKRTPIDL- 175 (423)
T ss_dssp C--SSSTTCSCCCSTTSSSSCEECCC---SSCEEEEEECSSEEEEEETTSCEEEEECEECSSSEEESBTTBCEEEEEES-
T ss_pred C--CCCCCCCCCCCCCCCCCCEEECC---CCCEEEEECCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCEEEEE-
T ss_conf 9--98589998767865657759747---99789998486828999179969997698898998674778887234696-
Q ss_pred CCCCCEEEEEEECCCEEEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCC-----------CCEEECEEEECCCCC
Q ss_conf 158983999982796479999853148886436899299993899997689998-----------751310885014789
Q 002677 467 SLKGLRTVRAACGVWHTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDK-----------EAKLVPTCVAALVEP 535 (893)
Q Consensus 467 ~l~~~~V~~VacG~~ht~aite~~~~~~~~~~~~~G~Ly~WG~n~~GqLG~g~~-----------~~~~~P~~V~~l~~~ 535 (893)
+.+.+|++|+||.+|+++|+ .+|+||+||.|.+||||++.. .....|+.+..+...
T Consensus 176 -~~~~~i~~va~G~~hs~alt------------~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~ 242 (423)
T 3mvd_K 176 -MEGTVCCSIASGADHLVILT------------TAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITRAK 242 (423)
T ss_dssp -STTCCEEEEEECSSEEEEEE------------TTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTTTTSSCEEECCTTCC
T ss_pred -CCCCCEEEEECCCCEEEEEE------------CCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCC
T ss_conf -69985899953897499992------------69809996278678547776434454333453335687688406886
Q ss_pred CEEEEECCCCEEEEE-ECCCCEEEECCCCCCCCCCCCCCC-CCCCEECCCCCCCCEEEEEECCCEEEEEECCCEEEEECC
Q ss_conf 635541378689999-649919999099988679999999-867021145678866999966780278705996999618
Q 002677 536 NFCRVACGHSLTVAL-TTSGHVYTMGSPVYGQLGNPQADG-KLPNRVEGKLSKSFVEEIACGSYHVAVLTSKTEVYTWGK 613 (893)
Q Consensus 536 ~I~~Ia~G~~htiaL-t~dG~Vy~wG~N~~GQLG~~~~~~-~~P~~v~~~l~~~~V~~Is~G~~Ht~aLt~~G~Vy~WG~ 613 (893)
+|++|+||.+|++++ +.+|+||+||.|.+||||.+.... ..+.++... ...|++|+||.+|+++|+++|+||+||.
T Consensus 243 ~v~~i~~g~~~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~--~~~v~~ia~G~~ht~alt~~G~v~~wG~ 320 (423)
T 3mvd_K 243 PFEAIWATNYCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTE--LKDIRHIAGGQHHTVILTTDLKCSVVGR 320 (423)
T ss_dssp CEEEEEEETTEEEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEEC--CCSEEEEEECSSEEEEEETTCCEEEEEC
T ss_pred CEEEEEECCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCEEEEEEECC--CCCEEEEECCCCEEEEEECCCCEEEEEC
T ss_conf 27999979967999988999499974999876799998874146448707--8874899724676999958993999979
Q ss_pred CCCCCCCCCCCCC-CCCCEEECCCCCCCEEEECCCCCCCCEEEEE
Q ss_conf 9999789999999-8666795225799599970478732106531
Q 002677 614 GANGRLGHGDTDD-RNSPSLVEALKDKQVKSIACGTNFTAAICLH 657 (893)
Q Consensus 614 n~~GQLG~g~~~~-~~~P~~V~~l~~~~V~~IacG~~hT~ai~~~ 657 (893)
|.+||||+++..+ ...|++|+.+.+ .|++|+||.+|+++|+..
T Consensus 321 n~~GqLG~g~~~~~~~~p~~v~~l~~-~v~~ia~G~~hs~alt~~ 364 (423)
T 3mvd_K 321 PEYGRLGLGDVKDVVEKPTIVKKLTE-KIVSVGCGEVCSYAVTID 364 (423)
T ss_dssp CGGGTTCSSSCCSCEEEEEECTTCCS-CEEEEEEETTEEEEEETT
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCCC-CEEEEECCCCEEEEECCC
T ss_conf 98888798986665468667214799-779997689869999589
No 9
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=469.08 Aligned_cols=323 Identities=24% Similarity=0.385 Sum_probs=181.5
Q ss_pred EEEEEECCCEEEEEECCCCEEEEECCCCCCCCCCCC---CCCCCCEEECCC--CCCCEEEEEECCCEEEEEECCCCEEEC
Q ss_conf 799996487599998499199993899997678899---774334784036--898389997079569999838989991
Q 002677 314 VQNIACGGRHAALVNKQGEVFSWGEESGGRLGHGVD---SDVLHPKLIDAL--SNMNIELVACGEYHTCAVTLSGDLYTW 388 (893)
Q Consensus 314 V~~Ia~G~~ht~~lt~~G~Vy~wG~n~~GqLG~g~~---~~~~~P~~V~~l--~~~~I~~Ia~G~~ht~aLT~dG~Vy~w 388 (893)
|....+++.|+++++++|+||+||.|.+||||++.. .+...|.+++.+ .+.+|++|+||.+|+++|+++|+||+|
T Consensus 12 ~~~~~~~~~h~~~~~~~g~v~~wG~n~~GqLG~G~~~~~~~~~~P~~~~~~~~~~~~i~~va~G~~Ht~alt~~G~v~~w 91 (473)
T 3of7_A 12 IINAQEDYKHMYLSVQPLDIFCWGTGSMCELGLGPLAKNKEVKRPRLNPFLPRDEAKIISFAVGGMHTLALDEESNVWSW 91 (473)
T ss_dssp CCCCGGGGHHHHCCSSCCEEEEEEECTTSTTCSCSCGGGGEEEEEEECTTSCTTTTCEEEEEECSSEEEEEETTCCEEEE
T ss_pred HHHHCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEECCCEEEEE
T ss_conf 65521342010267887658998189887369897766644557621554555778789997078769999169849996
Q ss_pred CCCCCCCCCCCCCCCCC-----------------------EEEEEEECC--CC---CCCEEEEEEECCCEEEEEECCCEE
Q ss_conf 99988987458999841-----------------------442136448--99---996099986279727999059809
Q 002677 389 GDGTYNFGLLGHGNEVS-----------------------HWVPKRVNG--PL---EGIHVSSISCGPWHTAVVTSAGQL 440 (893)
Q Consensus 389 G~n~~~~GqLG~g~~~~-----------------------~~~P~~V~~--~l---~g~~I~~Ia~G~~Ht~alt~~G~v 440 (893)
|.| ..||||.+.... ...|.+|.. .. ++.+|++|+||.+|+++|+++|+|
T Consensus 92 G~n--~~GqLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~l~~~~~~~~i~~va~G~~hs~alt~~G~v 169 (473)
T 3of7_A 92 GCN--DVGALGRDTSNAKEQLKDMDADDSSDDEDGDLNELESTPAKIPRESFPPLAEGHKVVQLAATDNMSCALFSNGEV 169 (473)
T ss_dssp ECC--TTSTTCSCCC---------------------CCHHHHSCEECCGGGCHHHHTTCCEEEEEECSSEEEEEETTSCE
T ss_pred ECC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCEEEEECCCCEEEEEECCCEE
T ss_conf 899--888899988653333234565556754334446334675013434577545898189998268879999489849
Q ss_pred EEEEC--CCCCCCCCCCC--CCCCCCEEEECCCCCEEEEEEECCCEEEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCC
Q ss_conf 98206--99865689999--653345455215898399998279647999985314888643689929999389999768
Q 002677 441 FTFGD--GTFGVLGHGDR--KSVSIPREVESLKGLRTVRAACGVWHTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLG 516 (893)
Q Consensus 441 y~wG~--n~~GQLG~g~~--~~~~~P~~V~~l~~~~V~~VacG~~ht~aite~~~~~~~~~~~~~G~Ly~WG~n~~GqLG 516 (893)
|+||. |.+||||++.. .....|.+|..+.+.+|++|+||.+|+++|+ .+|+||+||.|.+||||
T Consensus 170 y~wG~n~~~~GqLG~~~~~~~~~~~P~~v~~l~~~~i~~va~G~~hs~alt------------~~G~v~~wG~n~~GqLG 237 (473)
T 3of7_A 170 YAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAPGKDHILFLD------------EEGMVFAWGNGQQNQLG 237 (473)
T ss_dssp EEEECEEETTEEEESBTTTBSCEEEEEECCCCCSSCEEEEEECSSEEEEEE------------TTSCEEEEECCTTSTTS
T ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCEEEEEECCCEEEEEE------------CCCEEEEEECCCCCCCC
T ss_conf 994699689875488887774144767755247888799996378389991------------79929997699888889
Q ss_pred CCCCCC----EEECEEEECCCCCCEEEEECCCCEEEEEECCCCEEEECCCCCCCCCCCCCCC-----CCCCEECCCCCCC
Q ss_conf 999875----1310885014789635541378689999649919999099988679999999-----8670211456788
Q 002677 517 HGDKEA----KLVPTCVAALVEPNFCRVACGHSLTVALTTSGHVYTMGSPVYGQLGNPQADG-----KLPNRVEGKLSKS 587 (893)
Q Consensus 517 ~g~~~~----~~~P~~V~~l~~~~I~~Ia~G~~htiaLt~dG~Vy~wG~N~~GQLG~~~~~~-----~~P~~v~~~l~~~ 587 (893)
++.... ...|..+.. .+|++|+||.+|+++|+.+|+||+||.|.+||||.+.... ..|..+.. +.+.
T Consensus 238 ~~~~~~~~~~~~~p~~~~~---~~v~~Ia~G~~hs~alt~~G~v~~wG~n~~GqlG~~~~~~~~~~~~~P~~v~~-~~~~ 313 (473)
T 3of7_A 238 RKVMERFRLKTLDPRPFGL---RHVKYIASGENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGALVTKPKRLAL-PDNV 313 (473)
T ss_dssp SCCCGGGTTTTCSCEECSC---CSEEEEEECSSEEEEEETTSCEEEEEECTTSTTCCCSCCCTTCEEEEEEECCC-CTTC
T ss_pred CCCCCCCCCCCCCCEECCC---CCEEEEECCCCEEEEEECCCCEEEECCCCCCCCCCCCCCCCCCEEECCCCCCC-CCCC
T ss_conf 8844543335437521277---66389954897589991699889937898988588876568844541321255-6786
Q ss_pred CEEEEEECCCEEEEEECCCEEEEECCCCCCCCCCCCCC--------------CCCCCEEECCCCCCCEEEECCCCCCCCE
Q ss_conf 66999966780278705996999618999978999999--------------9866679522579959997047873210
Q 002677 588 FVEEIACGSYHVAVLTSKTEVYTWGKGANGRLGHGDTD--------------DRNSPSLVEALKDKQVKSIACGTNFTAA 653 (893)
Q Consensus 588 ~V~~Is~G~~Ht~aLt~~G~Vy~WG~n~~GQLG~g~~~--------------~~~~P~~V~~l~~~~V~~IacG~~hT~a 653 (893)
.|++|+||.+|+++|+++|+||+||.|.+||||++... ....|+.|+.+. .|++|+||.+|++|
T Consensus 314 ~i~~ia~G~~hs~~lt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~--~v~~Ia~G~~hs~a 391 (473)
T 3of7_A 314 VIRSIAAGEHHSLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNNVP--KFKSVAAGSHHSVA 391 (473)
T ss_dssp CEEEEEECSSEEEEEETTSCEEEEEECTTCTTCCCGGGCCTTCEECTTSCEEEEEEEEECCSSC--CEEEEEECSSEEEE
T ss_pred CEEEEEECCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCC--CEEEEEECCCEEEE
T ss_conf 3899986788699993898299987899874188844466531004578602621670047877--53799857876999
Q ss_pred EEE
Q ss_conf 653
Q 002677 654 ICL 656 (893)
Q Consensus 654 i~~ 656 (893)
|+.
T Consensus 392 l~~ 394 (473)
T 3of7_A 392 VAQ 394 (473)
T ss_dssp EET
T ss_pred EEC
T ss_conf 968
No 10
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=1.00 E-value=1 Score=463.08 Aligned_cols=327 Identities=29% Similarity=0.465 Sum_probs=179.4
Q ss_pred CCCCCCCC-CCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEECCCEEEEEECCC
Q ss_conf 53357788-74223889949998389999734898887773356555677836723468898799996487599998499
Q 002677 253 VSSSSQGS-GHDDGDALGDVFIWGEGTGDGVLGGGLNRVGSCFGVKMDSSLPKALESAVVLDVQNIACGGRHAALVNKQG 331 (893)
Q Consensus 253 ~s~~s~g~-~~~~~~s~G~Vy~WG~n~~~GqLG~g~~~~~~~~~~~~~~~~P~~i~~~~~~~V~~Ia~G~~ht~~lt~~G 331 (893)
+...+.|. |.++++.+|+||+||.|. .||||.+... ......|..+... .+|++|+||..|+++|+++|
T Consensus 61 i~~va~G~~hs~~l~~~G~v~~wG~n~-~GqLG~~~~~-------~~~~~~P~~v~l~--~~i~~va~G~~hs~alt~~G 130 (413)
T 1a12_A 61 VVQAEAGGMHTVCLSKSGQVYSFGCND-EGALGRDTSV-------EGSEMVPGKVELQ--EKVVQVSAGDSHTAALTDDG 130 (413)
T ss_dssp EEEEEECSSEEEEEETTSCEEEEECCT-TSTTCSCCCS-------TTGGGSCEECCCC--SCEEEEEECSSEEEEEETTS
T ss_pred EEEEEECCCEEEEECCCCCEEEEECCC-CCCCCCCCCC-------CCCCCCCEEECCC--CCEEEEECCCCEEEEECCCC
T ss_conf 699986777589994799899988999-8877988888-------7534587475388--75899966887379984899
Q ss_pred CEEEEEC--CCCCCCCCCCCCCC-CCCEEECCCCCCCEEEEEECCCEEEEEECCCCEEECCCCCCCCCCCCCCCCC----
Q ss_conf 1999938--99997678899774-3347840368983899970795699998389899919998898745899984----
Q 002677 332 EVFSWGE--ESGGRLGHGVDSDV-LHPKLIDALSNMNIELVACGEYHTCAVTLSGDLYTWGDGTYNFGLLGHGNEV---- 404 (893)
Q Consensus 332 ~Vy~wG~--n~~GqLG~g~~~~~-~~P~~V~~l~~~~I~~Ia~G~~ht~aLT~dG~Vy~wG~n~~~~GqLG~g~~~---- 404 (893)
+||+||. |.+||||.+..... ..|.+| +...+|++|+||.+|+++|+++|+||+||.| .+||||.+...
T Consensus 131 ~v~~wG~~~n~~GqlG~~~~~~~~~~P~~v--~~~~~i~~ia~G~~hs~alt~~G~v~~wG~n--~~GqLG~~~~~~~~~ 206 (413)
T 1a12_A 131 RVFLWGSFRDNNGVIGLLEPMKKSMVPVQV--QLDVPVVKVASGNDHLVMLTADGDLYTLGCG--EQGQLGRVPELFANR 206 (413)
T ss_dssp CEEEEECEEETTEEEESSBBTBCEEEEEEE--CCSSCEEEEEECSSEEEEEETTSCEEEEECC--TTSTTCSCGGGTSSS
T ss_pred CEEEEECCCCCCCCCCCCCCCCCCCCCEEE--CCCCCEEEEEECCCEEEEECCCCCEEEEECC--CCCCCCCCCCCCCCC
T ss_conf 489943776899863767866446678796--1899779998467618998589988983389--888668875333455
Q ss_pred -------CEEEEEEECCCC----CCCEEEEEEECCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCEEEECCCC--C
Q ss_conf -------144213644899----996099986279727999059809982069986568999965334545521589--8
Q 002677 405 -------SHWVPKRVNGPL----EGIHVSSISCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRKSVSIPREVESLKG--L 471 (893)
Q Consensus 405 -------~~~~P~~V~~~l----~g~~I~~Ia~G~~Ht~alt~~G~vy~wG~n~~GQLG~g~~~~~~~P~~V~~l~~--~ 471 (893)
....|..+..+. ...+|++|+||.+|+++|+++|+||+||.|.+||||+++......|++|..+.+ .
T Consensus 207 ~~~~~~~~~~~P~~v~~~~~g~~~~~~i~~ia~G~~hs~alt~~G~v~~wG~n~~gqLG~~~~~~~~~P~~v~~l~~~~~ 286 (413)
T 1a12_A 207 GGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTK 286 (413)
T ss_dssp CGGGGHHHHHSCEECCCBCSSCCSBCCEEEEEEETTEEEEEETTCCEEEEECCTTSTTSCSSCSCEEEEEECGGGCCTTC
T ss_pred CCCCCCCCCCCCCEEEECCCCCCCCCCEEEEEECCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCEECHHCCCCCC
T ss_conf 55455322446745763145666785489997078879999689979998499876777999876356677010158873
Q ss_pred EEEEEEECCCEEEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCC-CCCCEEECEEEECCCCCCEEEEECCCCEEEEE
Q ss_conf 39999827964799998531488864368992999938999976899-98751310885014789635541378689999
Q 002677 472 RTVRAACGVWHTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHG-DKEAKLVPTCVAALVEPNFCRVACGHSLTVAL 550 (893)
Q Consensus 472 ~V~~VacG~~ht~aite~~~~~~~~~~~~~G~Ly~WG~n~~GqLG~g-~~~~~~~P~~V~~l~~~~I~~Ia~G~~htiaL 550 (893)
+|++|+||.+|+++++ .+|+||+||.|.+||||++ +......|+.|..+. +|++|+||.+|+++|
T Consensus 287 ~v~~ia~G~~hs~al~------------~~G~v~~wG~n~~GqLG~g~~~~~~~~P~~v~~l~--~v~~v~~G~~hs~al 352 (413)
T 1a12_A 287 SWVGFSGGQHHTVCMD------------SEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLP--AVSSVACGASVGYAV 352 (413)
T ss_dssp CEEEEEECSSEEEEEE------------TTSCEEEEECCGGGTTCSCTTCCCEEEEEECCSSS--SEEEEEECSSEEEEE
T ss_pred EEEEEECCCCEEEEEE------------CCCCEEEEECCCCCCCCCCCCCCCCCCCEEECCCC--CEEEEEECCCEEEEE
T ss_conf 2999950524589990------------79989986489888668999886366777922667--625999775647999
Q ss_pred ECCCCEEEECCCCCCCCCCCCCC-CCCCCEECCC-CCCCCEEEEEECCCEEEEEECCCE
Q ss_conf 64991999909998867999999-9867021145-678866999966780278705996
Q 002677 551 TTSGHVYTMGSPVYGQLGNPQAD-GKLPNRVEGK-LSKSFVEEIACGSYHVAVLTSKTE 607 (893)
Q Consensus 551 t~dG~Vy~wG~N~~GQLG~~~~~-~~~P~~v~~~-l~~~~V~~Is~G~~Ht~aLt~~G~ 607 (893)
+++|+||+||.|.+||||.+... ...|..+... +.+..|.+|+||.+|+++|+++|+
T Consensus 353 t~~G~v~~wG~n~~gqLG~g~~~~~~~P~~v~~~~~~~~~v~~v~~G~~ht~~l~~~g~ 411 (413)
T 1a12_A 353 TKDGRVFAWGMGTNYQLGTGQDEDAWSPVEMMGKQLENRVVLSVSSGGQHTVLLVKDKE 411 (413)
T ss_dssp ETTSCEEEEECCTTSTTCSSSCSCEEEEEECCSTTTTTEEEEEEEECSSEEEEEEEECS
T ss_pred ECCCCEEEECCCCCCCCCCCCCCCCCCCEECCCCCCCCCEEEEEEECCCCEEEEEECCC
T ss_conf 48997899228989878799988755374854556589869999557882899981688
Done!