Query 002678
Match_columns 893
No_of_seqs 280 out of 452
Neff 3.7
Searched_HMMs 46136
Date Fri Mar 29 04:55:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002678.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002678hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2150 CCR4-NOT transcription 100.0 2E-117 4E-122 986.0 42.6 222 2-249 1-222 (575)
2 COG5665 NOT5 CCR4-NOT transcri 100.0 4.1E-94 8.9E-99 766.3 32.0 197 12-234 1-197 (548)
3 PF04065 Not3: Not1 N-terminal 100.0 8.2E-88 1.8E-92 693.3 24.9 228 2-238 1-233 (233)
4 PF04153 NOT2_3_5: NOT2 / NOT3 100.0 1.8E-36 3.9E-41 289.9 10.0 126 748-888 1-134 (134)
5 COG5601 CDC36 General negative 100.0 2E-33 4.4E-38 270.8 2.1 159 712-888 10-172 (172)
6 KOG2151 Predicted transcriptio 99.6 5.9E-16 1.3E-20 165.8 3.4 106 703-828 202-312 (312)
7 KOG2151 Predicted transcriptio 99.3 5.9E-13 1.3E-17 143.1 5.3 133 720-889 37-175 (312)
8 cd07674 F-BAR_FCHO1 The F-BAR 95.9 0.08 1.7E-06 56.7 11.9 173 24-219 57-250 (261)
9 PHA02562 46 endonuclease subun 95.5 0.67 1.5E-05 53.6 18.2 138 5-156 177-325 (562)
10 PF00038 Filament: Intermediat 94.4 0.76 1.6E-05 49.6 13.9 136 47-193 128-275 (312)
11 PF12128 DUF3584: Protein of u 94.4 0.64 1.4E-05 59.6 15.3 132 38-193 731-875 (1201)
12 PF08317 Spc7: Spc7 kinetochor 94.2 4.2 9.1E-05 45.2 19.2 46 166-213 244-289 (325)
13 cd07673 F-BAR_FCHO2 The F-BAR 94.0 0.46 1E-05 51.5 11.2 172 25-219 65-257 (269)
14 TIGR03185 DNA_S_dndD DNA sulfu 93.6 2 4.3E-05 51.6 16.6 32 38-69 261-292 (650)
15 KOG0996 Structural maintenance 93.3 2.4 5.1E-05 54.1 16.6 146 38-198 819-967 (1293)
16 KOG4438 Centromere-associated 92.4 5.6 0.00012 46.2 16.9 97 80-197 263-361 (446)
17 TIGR02169 SMC_prok_A chromosom 92.4 3.1 6.7E-05 51.8 16.3 17 45-61 193-209 (1164)
18 PF03357 Snf7: Snf7; InterPro 92.3 0.57 1.2E-05 45.8 8.0 88 130-218 1-122 (171)
19 cd07648 F-BAR_FCHO The F-BAR ( 91.8 1.3 2.8E-05 47.2 10.6 87 131-218 162-249 (261)
20 PRK04863 mukB cell division pr 91.6 13 0.00028 49.4 21.0 51 166-216 404-454 (1486)
21 cd00632 Prefoldin_beta Prefold 91.5 2.3 5E-05 39.8 10.7 82 50-156 3-89 (105)
22 PF10168 Nup88: Nuclear pore c 91.5 3.5 7.7E-05 50.7 15.0 157 14-187 537-706 (717)
23 COG1196 Smc Chromosome segrega 91.4 1.5 3.3E-05 56.1 12.4 12 222-233 971-982 (1163)
24 PRK04778 septation ring format 91.3 14 0.00031 44.1 19.4 35 180-214 452-490 (569)
25 KOG2911 Uncharacterized conser 91.0 0.47 1E-05 54.7 6.7 86 131-216 234-353 (439)
26 KOG0963 Transcription factor/C 90.9 3 6.5E-05 50.2 13.2 31 7-37 71-101 (629)
27 KOG0250 DNA repair protein RAD 90.8 4.5 9.7E-05 51.4 15.0 64 124-187 395-464 (1074)
28 COG1196 Smc Chromosome segrega 90.1 6 0.00013 50.9 15.9 30 167-196 871-900 (1163)
29 KOG0996 Structural maintenance 89.9 6.5 0.00014 50.4 15.4 164 6-198 444-616 (1293)
30 PHA02562 46 endonuclease subun 89.4 20 0.00044 41.7 18.3 23 136-158 350-372 (562)
31 PF08317 Spc7: Spc7 kinetochor 89.2 14 0.00031 41.1 16.1 103 12-157 162-264 (325)
32 TIGR02338 gimC_beta prefoldin, 89.1 6.3 0.00014 37.4 11.5 84 47-155 4-92 (110)
33 PHA00425 DNA packaging protein 89.0 1.1 2.3E-05 41.5 6.0 67 142-218 6-76 (88)
34 PF07139 DUF1387: Protein of u 88.9 5.6 0.00012 44.5 12.5 112 41-217 148-260 (302)
35 PRK02224 chromosome segregatio 88.8 23 0.00049 43.9 19.0 26 168-193 421-446 (880)
36 cd07647 F-BAR_PSTPIP The F-BAR 88.5 7.3 0.00016 41.4 12.8 48 181-233 190-237 (239)
37 cd07653 F-BAR_CIP4-like The F- 88.5 13 0.00029 39.1 14.7 45 7-57 3-47 (251)
38 PRK03918 chromosome segregatio 88.4 17 0.00037 44.7 17.5 32 126-157 448-479 (880)
39 KOG0995 Centromere-associated 87.7 4.6 9.9E-05 48.4 11.5 65 82-148 262-326 (581)
40 PTZ00464 SNF-7-like protein; P 87.7 2.3 5E-05 45.1 8.4 90 129-218 17-142 (211)
41 PRK02224 chromosome segregatio 87.5 13 0.00028 46.0 15.8 16 89-104 530-545 (880)
42 KOG0161 Myosin class II heavy 87.2 5.9 0.00013 53.4 13.3 47 3-49 1323-1371(1930)
43 PF11123 DNA_Packaging_2: DNA 87.0 1.9 4.2E-05 39.6 6.3 67 142-218 4-74 (82)
44 PRK09343 prefoldin subunit bet 87.0 11 0.00024 36.6 12.0 44 44-106 5-48 (121)
45 PRK11637 AmiB activator; Provi 87.0 21 0.00045 41.0 16.1 18 82-99 117-134 (428)
46 COG4942 Membrane-bound metallo 87.0 13 0.00029 43.3 14.5 126 6-157 42-174 (420)
47 KOG1029 Endocytic adaptor prot 86.6 16 0.00034 45.5 15.2 55 6-60 324-382 (1118)
48 KOG0933 Structural maintenance 86.6 34 0.00074 43.9 18.3 81 138-218 407-504 (1174)
49 COG0419 SbcC ATPase involved i 86.4 12 0.00026 46.9 14.9 23 132-154 649-671 (908)
50 PF03148 Tektin: Tektin family 86.3 64 0.0014 37.0 19.4 91 5-103 56-169 (384)
51 PF07888 CALCOCO1: Calcium bin 86.2 9.5 0.00021 45.8 13.1 63 6-70 140-202 (546)
52 PF03962 Mnd1: Mnd1 family; I 85.8 7.6 0.00016 40.4 10.8 99 112-215 41-150 (188)
53 smart00787 Spc7 Spc7 kinetocho 85.4 70 0.0015 36.1 18.7 25 13-37 74-98 (312)
54 PF04156 IncA: IncA protein; 85.3 39 0.00085 34.3 15.5 21 82-102 130-150 (191)
55 PF15619 Lebercilin: Ciliary p 85.2 11 0.00025 39.5 11.9 128 9-149 57-190 (194)
56 PRK01156 chromosome segregatio 85.2 35 0.00077 42.5 18.0 45 113-157 452-496 (895)
57 PF04799 Fzo_mitofusin: fzo-li 85.0 2.1 4.6E-05 44.4 6.3 63 6-100 102-165 (171)
58 KOG0250 DNA repair protein RAD 85.0 18 0.00039 46.3 15.2 65 40-113 232-312 (1074)
59 PF13166 AAA_13: AAA domain 84.8 31 0.00067 41.6 16.8 27 130-156 370-396 (712)
60 PRK05771 V-type ATP synthase s 84.8 38 0.00082 41.0 17.5 77 135-211 213-296 (646)
61 KOG4674 Uncharacterized conser 84.8 4.6 0.0001 53.8 10.5 103 1-110 1277-1393(1822)
62 PRK03918 chromosome segregatio 84.2 27 0.00059 43.0 16.3 12 21-32 156-167 (880)
63 cd00176 SPEC Spectrin repeats, 84.1 24 0.00053 34.2 12.9 23 132-154 74-96 (213)
64 PTZ00464 SNF-7-like protein; P 83.8 39 0.00083 36.2 15.1 43 167-209 122-169 (211)
65 KOG0161 Myosin class II heavy 83.5 15 0.00032 50.0 14.2 65 128-192 1053-1130(1930)
66 PF05833 FbpA: Fibronectin-bin 83.1 0.47 1E-05 53.9 0.8 41 168-209 396-436 (455)
67 PTZ00446 vacuolar sorting prot 82.9 7.3 0.00016 41.0 9.3 25 194-218 124-148 (191)
68 TIGR00606 rad50 rad50. This fa 82.9 23 0.00049 46.4 15.6 46 41-95 607-652 (1311)
69 cd07672 F-BAR_PSTPIP2 The F-BA 82.7 41 0.00088 36.4 15.0 19 196-214 204-222 (240)
70 cd07598 BAR_FAM92 The Bin/Amph 82.6 19 0.00042 38.2 12.4 83 5-99 21-107 (211)
71 PF09745 DUF2040: Coiled-coil 82.6 7.5 0.00016 38.5 8.7 98 6-109 2-124 (127)
72 TIGR00606 rad50 rad50. This fa 82.5 40 0.00088 44.2 17.6 83 133-215 308-405 (1311)
73 PF11932 DUF3450: Protein of u 81.8 76 0.0016 34.0 16.6 28 181-208 129-157 (251)
74 PF12729 4HB_MCP_1: Four helix 81.8 22 0.00047 33.4 11.3 109 34-154 70-178 (181)
75 PRK01156 chromosome segregatio 81.7 35 0.00077 42.5 16.0 23 176-198 729-751 (895)
76 KOG0612 Rho-associated, coiled 81.6 21 0.00044 46.4 13.8 91 47-157 641-734 (1317)
77 KOG4673 Transcription factor T 81.4 15 0.00032 45.3 12.0 105 34-156 397-507 (961)
78 PRK11637 AmiB activator; Provi 81.3 24 0.00053 40.5 13.5 25 81-105 109-133 (428)
79 PF07926 TPR_MLP1_2: TPR/MLP1/ 81.2 47 0.001 32.5 13.6 122 4-156 5-131 (132)
80 PF12128 DUF3584: Protein of u 81.1 29 0.00063 45.2 15.5 27 6-32 604-630 (1201)
81 KOG0994 Extracellular matrix g 81.1 48 0.001 43.2 16.4 17 126-142 1693-1709(1758)
82 PRK09039 hypothetical protein; 81.0 46 0.00099 37.7 15.3 47 130-177 137-183 (343)
83 PF10174 Cast: RIM-binding pro 80.8 31 0.00067 43.3 14.9 43 166-208 548-598 (775)
84 PF14662 CCDC155: Coiled-coil 80.8 59 0.0013 34.7 14.8 41 3-56 16-56 (193)
85 cd00890 Prefoldin Prefoldin is 80.5 15 0.00032 34.6 9.7 32 125-156 82-113 (129)
86 PF08429 PLU-1: PLU-1-like pro 80.1 35 0.00075 37.6 13.7 79 10-94 104-192 (335)
87 PF07106 TBPIP: Tat binding pr 80.1 8.7 0.00019 38.7 8.5 76 139-214 81-159 (169)
88 KOG0624 dsRNA-activated protei 80.0 19 0.00041 41.7 11.7 22 52-73 152-173 (504)
89 smart00503 SynN Syntaxin N-ter 79.8 21 0.00046 32.8 10.3 103 6-108 8-115 (117)
90 PF01544 CorA: CorA-like Mg2+ 79.8 8.8 0.00019 40.1 8.7 83 133-215 114-207 (292)
91 PF06008 Laminin_I: Laminin Do 79.7 38 0.00083 36.4 13.6 184 6-214 56-244 (264)
92 TIGR02680 conserved hypothetic 79.7 44 0.00095 44.3 16.5 103 14-156 221-323 (1353)
93 PRK04778 septation ring format 79.5 1.3E+02 0.0027 36.4 19.0 60 47-115 253-312 (569)
94 PLN03229 acetyl-coenzyme A car 79.4 53 0.0011 41.1 15.9 32 141-176 670-705 (762)
95 PF06160 EzrA: Septation ring 79.1 26 0.00056 42.0 13.2 126 85-210 132-288 (560)
96 TIGR02168 SMC_prok_B chromosom 79.1 38 0.00082 42.3 15.1 16 46-61 196-211 (1179)
97 COG1293 Predicted RNA-binding 79.0 18 0.0004 43.4 12.0 80 24-104 266-346 (564)
98 PF03962 Mnd1: Mnd1 family; I 78.9 25 0.00054 36.7 11.5 65 135-203 108-177 (188)
99 PRK03947 prefoldin subunit alp 78.9 23 0.0005 34.6 10.7 32 125-156 89-120 (140)
100 KOG0810 SNARE protein Syntaxin 78.1 82 0.0018 35.5 15.8 183 10-215 44-245 (297)
101 PF01496 V_ATPase_I: V-type AT 78.0 8.4 0.00018 47.3 9.1 53 15-69 76-129 (759)
102 cd07675 F-BAR_FNBP1L The F-BAR 77.6 1.2E+02 0.0025 33.5 16.5 79 8-98 4-132 (252)
103 TIGR02168 SMC_prok_B chromosom 77.1 81 0.0017 39.5 17.1 26 167-192 434-459 (1179)
104 PF09726 Macoilin: Transmembra 76.9 13 0.00028 45.8 10.2 49 47-95 457-511 (697)
105 KOG2129 Uncharacterized conser 76.5 63 0.0014 38.1 14.5 18 4-21 72-89 (552)
106 PF07888 CALCOCO1: Calcium bin 76.3 1E+02 0.0022 37.6 16.7 9 179-187 326-334 (546)
107 PF15272 BBP1_C: Spindle pole 76.2 13 0.00029 39.4 8.6 44 13-60 19-65 (196)
108 COG1283 NptA Na+/phosphate sym 75.6 35 0.00077 41.1 12.9 174 8-206 337-516 (533)
109 KOG1899 LAR transmembrane tyro 75.5 17 0.00037 44.4 10.1 95 123-218 192-292 (861)
110 PF13514 AAA_27: AAA domain 75.0 83 0.0018 40.7 16.9 60 5-64 133-199 (1111)
111 PF04740 LXG: LXG domain of WX 74.9 39 0.00084 34.5 11.5 38 38-75 9-47 (204)
112 PF06160 EzrA: Septation ring 74.9 1.1E+02 0.0024 36.8 16.9 85 47-157 249-333 (560)
113 PF03938 OmpH: Outer membrane 74.9 32 0.0007 33.7 10.6 61 5-65 39-102 (158)
114 PF06730 FAM92: FAM92 protein; 74.3 1E+02 0.0022 33.5 14.7 47 131-191 154-205 (219)
115 PF15070 GOLGA2L5: Putative go 74.2 27 0.00058 42.7 11.7 74 135-209 85-169 (617)
116 TIGR03185 DNA_S_dndD DNA sulfu 74.2 68 0.0015 39.0 15.1 42 7-48 389-430 (650)
117 PRK05287 hypothetical protein; 73.9 27 0.00059 38.3 10.6 120 46-194 57-177 (250)
118 COG3096 MukB Uncharacterized p 73.8 10 0.00022 46.9 7.9 138 51-213 807-947 (1480)
119 KOG2685 Cystoskeletal protein 73.5 1.2E+02 0.0027 35.7 16.0 79 9-95 87-187 (421)
120 KOG4460 Nuclear pore complex, 73.4 1.9E+02 0.0041 35.5 17.7 41 13-61 559-599 (741)
121 PF03999 MAP65_ASE1: Microtubu 73.3 12 0.00026 45.2 8.5 127 4-153 266-411 (619)
122 PRK09039 hypothetical protein; 73.3 47 0.001 37.7 12.6 70 137-209 130-199 (343)
123 cd07619 BAR_Rich2 The Bin/Amph 73.2 95 0.0021 34.2 14.4 18 10-27 85-102 (248)
124 KOG0240 Kinesin (SMY1 subfamil 73.1 30 0.00066 41.9 11.4 29 46-74 355-383 (607)
125 TIGR00293 prefoldin, archaeal 72.5 14 0.0003 35.3 7.2 32 125-156 81-112 (126)
126 COG0419 SbcC ATPase involved i 72.5 1.6E+02 0.0035 37.3 18.2 21 139-159 690-710 (908)
127 COG1579 Zn-ribbon protein, pos 72.3 53 0.0012 35.9 12.2 48 6-62 35-82 (239)
128 KOG0976 Rho/Rac1-interacting s 72.0 28 0.00062 43.6 11.0 113 38-158 286-407 (1265)
129 PF05597 Phasin: Poly(hydroxya 71.8 65 0.0014 32.3 11.8 24 137-160 109-132 (132)
130 KOG0933 Structural maintenance 71.6 1.3E+02 0.0028 39.1 16.6 61 46-106 711-779 (1174)
131 KOG4643 Uncharacterized coiled 70.6 40 0.00087 43.2 12.1 75 12-98 382-462 (1195)
132 KOG2117 Uncharacterized conser 70.4 14 0.0003 42.5 7.6 91 1-97 44-162 (379)
133 cd07655 F-BAR_PACSIN The F-BAR 69.9 24 0.00053 38.1 9.1 41 13-53 48-92 (258)
134 PF10267 Tmemb_cc2: Predicted 69.6 1.2E+02 0.0026 35.5 15.0 21 166-186 298-318 (395)
135 COG5185 HEC1 Protein involved 69.6 26 0.00057 41.6 9.7 62 84-147 300-361 (622)
136 PF09789 DUF2353: Uncharacteri 69.5 2.1E+02 0.0046 32.7 18.4 68 137-214 133-224 (319)
137 cd07671 F-BAR_PSTPIP1 The F-BA 69.0 63 0.0014 35.0 11.9 27 38-64 73-99 (242)
138 smart00502 BBC B-Box C-termina 68.7 79 0.0017 28.9 11.0 32 125-156 38-69 (127)
139 PF09726 Macoilin: Transmembra 68.3 60 0.0013 40.3 13.0 50 41-98 420-476 (697)
140 KOG0994 Extracellular matrix g 68.2 71 0.0015 41.9 13.4 62 6-69 1426-1487(1758)
141 PRK04863 mukB cell division pr 68.0 1.9E+02 0.0042 39.1 18.1 17 199-215 553-569 (1486)
142 COG1283 NptA Na+/phosphate sym 67.7 1.2E+02 0.0025 36.9 14.7 43 170-212 440-483 (533)
143 PF05483 SCP-1: Synaptonemal c 67.2 37 0.0008 42.0 10.6 129 54-185 556-719 (786)
144 KOG4364 Chromatin assembly fac 67.1 67 0.0015 39.8 12.6 28 159-186 352-379 (811)
145 cd07671 F-BAR_PSTPIP1 The F-BA 66.9 55 0.0012 35.4 11.0 79 5-98 109-197 (242)
146 PF07798 DUF1640: Protein of u 66.8 33 0.00072 35.1 8.9 16 125-140 148-163 (177)
147 cd07653 F-BAR_CIP4-like The F- 66.6 45 0.00098 35.2 10.2 31 5-35 115-145 (251)
148 KOG0804 Cytoplasmic Zn-finger 66.2 26 0.00057 41.3 8.9 35 80-115 326-360 (493)
149 cd00179 SynN Syntaxin N-termin 66.1 54 0.0012 31.7 9.9 95 7-107 7-113 (151)
150 PTZ00473 Plasmodium Vir superf 65.9 2.4 5.3E-05 48.7 0.7 94 83-182 119-215 (420)
151 PF14362 DUF4407: Domain of un 65.2 83 0.0018 34.4 12.1 63 84-154 151-213 (301)
152 KOG0962 DNA repair protein RAD 65.2 1.6E+02 0.0036 39.1 16.1 63 4-68 887-949 (1294)
153 PF10186 Atg14: UV radiation r 65.1 1.4E+02 0.003 31.7 13.5 18 6-23 31-48 (302)
154 cd07598 BAR_FAM92 The Bin/Amph 65.0 32 0.0007 36.6 8.7 50 8-59 78-127 (211)
155 KOG1029 Endocytic adaptor prot 64.8 1.2E+02 0.0026 38.5 14.1 56 103-158 514-570 (1118)
156 cd07681 F-BAR_PACSIN3 The F-BA 64.7 1.6E+02 0.0034 32.7 14.0 41 11-57 7-47 (258)
157 smart00806 AIP3 Actin interact 64.6 1.4E+02 0.003 35.3 14.2 59 3-61 211-275 (426)
158 PTZ00332 paraflagellar rod pro 64.2 1.6E+02 0.0035 35.6 14.6 72 137-215 324-398 (589)
159 PF09755 DUF2046: Uncharacteri 63.9 68 0.0015 36.4 11.2 81 138-218 85-177 (310)
160 KOG0804 Cytoplasmic Zn-finger 63.8 25 0.00055 41.5 8.1 31 16-46 328-358 (493)
161 cd07651 F-BAR_PombeCdc15_like 63.6 31 0.00067 36.5 8.3 46 182-232 188-233 (236)
162 PF05667 DUF812: Protein of un 63.4 41 0.0009 41.0 10.2 78 127-205 325-402 (594)
163 KOG0612 Rho-associated, coiled 63.4 43 0.00094 43.7 10.6 23 134-156 620-642 (1317)
164 PF08385 DHC_N1: Dynein heavy 63.0 3E+02 0.0066 32.2 17.0 89 126-214 346-448 (579)
165 COG3883 Uncharacterized protei 62.8 2.5E+02 0.0054 31.5 15.0 54 135-196 139-192 (265)
166 PF06657 Cep57_MT_bd: Centroso 62.8 41 0.00088 30.9 7.8 56 9-64 13-75 (79)
167 KOG0964 Structural maintenance 62.8 2E+02 0.0043 37.4 15.7 86 125-210 427-520 (1200)
168 KOG2150 CCR4-NOT transcription 62.7 3.4 7.4E-05 49.4 1.1 145 733-890 430-574 (575)
169 KOG0977 Nuclear envelope prote 62.3 78 0.0017 38.5 12.0 29 125-153 263-291 (546)
170 COG1340 Uncharacterized archae 62.0 2.2E+02 0.0048 32.3 14.7 25 182-206 264-289 (294)
171 COG2882 FliJ Flagellar biosynt 61.7 1.1E+02 0.0024 31.4 11.3 124 41-198 14-138 (148)
172 PF14735 HAUS4: HAUS augmin-li 61.6 1.2E+02 0.0027 33.1 12.4 86 5-94 39-125 (238)
173 cd00584 Prefoldin_alpha Prefol 61.5 73 0.0016 30.6 9.7 32 125-156 82-113 (129)
174 KOG4286 Dystrophin-like protei 61.3 36 0.00077 42.5 9.0 139 39-191 89-252 (966)
175 KOG3565 Cdc42-interacting prot 60.9 1.3E+02 0.0027 37.3 13.6 48 4-57 9-56 (640)
176 PF13949 ALIX_LYPXL_bnd: ALIX 60.3 2.5E+02 0.0053 30.3 18.5 30 4-33 79-108 (296)
177 PRK10780 periplasmic chaperone 60.1 80 0.0017 31.9 10.1 91 5-111 42-139 (165)
178 PRK00286 xseA exodeoxyribonucl 59.8 2.7E+02 0.0059 32.2 15.5 41 14-62 258-298 (438)
179 PF07851 TMPIT: TMPIT-like pro 59.6 64 0.0014 36.9 10.2 56 46-108 39-94 (330)
180 PTZ00108 DNA topoisomerase 2-l 59.2 94 0.002 41.6 12.9 110 40-157 996-1122(1388)
181 TIGR01843 type_I_hlyD type I s 59.2 56 0.0012 36.2 9.7 7 111-117 188-194 (423)
182 PF15294 Leu_zip: Leucine zipp 59.0 1.9E+02 0.0041 32.5 13.4 132 9-156 11-151 (278)
183 PF12297 EVC2_like: Ellis van 58.7 3E+02 0.0064 32.8 15.3 41 24-64 214-254 (429)
184 PF09789 DUF2353: Uncharacteri 58.4 1.9E+02 0.0041 33.1 13.5 135 48-213 14-167 (319)
185 KOG0980 Actin-binding protein 58.2 1.6E+02 0.0034 37.8 13.8 68 131-198 467-541 (980)
186 TIGR01612 235kDa-fam reticuloc 57.8 3E+02 0.0064 39.2 16.8 63 178-240 1296-1362(2757)
187 KOG0579 Ste20-like serine/thre 57.6 2.5E+02 0.0054 35.5 14.9 60 4-63 799-870 (1187)
188 PF13514 AAA_27: AAA domain 57.5 2.6E+02 0.0057 36.4 16.3 24 52-75 821-844 (1111)
189 COG2433 Uncharacterized conser 56.7 49 0.0011 40.5 9.1 146 34-189 337-504 (652)
190 KOG0982 Centrosomal protein Nu 56.1 2E+02 0.0044 34.2 13.5 23 41-63 327-349 (502)
191 PF05791 Bacillus_HBL: Bacillu 55.8 1.7E+02 0.0037 30.3 11.9 73 14-101 78-150 (184)
192 PF13949 ALIX_LYPXL_bnd: ALIX 55.5 3E+02 0.0064 29.7 15.5 78 20-101 22-103 (296)
193 TIGR02449 conserved hypothetic 55.4 1.1E+02 0.0023 27.7 8.8 40 58-105 26-65 (65)
194 cd07593 BAR_MUG137_fungi The B 54.6 1E+02 0.0022 33.1 10.2 88 9-105 114-201 (215)
195 cd07610 FCH_F-BAR The Extended 54.3 1.6E+02 0.0034 29.5 11.0 21 198-218 157-177 (191)
196 PF02994 Transposase_22: L1 tr 54.1 25 0.00054 40.1 6.0 22 47-70 51-72 (370)
197 PF14523 Syntaxin_2: Syntaxin- 53.7 22 0.00048 32.4 4.6 58 6-63 37-95 (102)
198 PF06798 PrkA: PrkA serine pro 53.5 3.5E+02 0.0075 29.9 15.9 43 166-214 191-235 (254)
199 PF05622 HOOK: HOOK protein; 53.4 4.4 9.5E-05 49.4 0.0 51 142-192 457-507 (713)
200 PF00435 Spectrin: Spectrin re 53.3 8.9 0.00019 33.1 1.9 51 52-109 3-54 (105)
201 PF08537 NBP1: Fungal Nap bind 52.9 1.6E+02 0.0035 33.7 11.8 53 130-200 175-227 (323)
202 cd07658 F-BAR_NOSTRIN The F-BA 52.5 3.1E+02 0.0067 29.6 13.5 172 4-212 39-237 (239)
203 TIGR00634 recN DNA repair prot 52.4 4.5E+02 0.0097 31.7 16.1 23 129-151 276-298 (563)
204 PF14182 YgaB: YgaB-like prote 52.3 73 0.0016 29.7 7.5 31 52-97 39-69 (79)
205 PF15397 DUF4618: Domain of un 52.1 1.8E+02 0.0039 32.4 11.8 27 131-157 194-220 (258)
206 TIGR02977 phageshock_pspA phag 51.9 3.1E+02 0.0067 29.1 13.3 41 14-57 3-45 (219)
207 cd09238 V_Alix_like_1 Protein- 51.6 2.8E+02 0.006 31.4 13.5 16 199-214 322-337 (339)
208 cd07602 BAR_RhoGAP_OPHN1-like 51.5 3.4E+02 0.0074 29.2 13.5 47 165-214 139-187 (207)
209 PF05082 Rop-like: Rop-like; 51.4 16 0.00035 32.9 3.1 19 46-64 5-23 (66)
210 PF11166 DUF2951: Protein of u 51.4 41 0.00089 32.3 5.9 57 9-68 21-78 (98)
211 KOG3850 Predicted membrane pro 51.3 53 0.0012 38.3 7.9 26 165-190 345-370 (455)
212 cd07627 BAR_Vps5p The Bin/Amph 51.1 2.6E+02 0.0057 29.4 12.5 22 10-31 59-80 (216)
213 PF15188 CCDC-167: Coiled-coil 51.0 65 0.0014 30.3 7.1 44 7-50 3-47 (85)
214 cd07600 BAR_Gvp36 The Bin/Amph 51.0 2.7E+02 0.0059 30.5 12.9 43 10-59 111-153 (242)
215 PF09731 Mitofilin: Mitochondr 50.8 5.1E+02 0.011 31.0 16.6 51 17-67 224-275 (582)
216 PF03114 BAR: BAR domain; Int 50.8 86 0.0019 31.2 8.6 87 9-102 131-218 (229)
217 TIGR00634 recN DNA repair prot 50.7 4.2E+02 0.009 31.9 15.5 19 138-156 267-285 (563)
218 cd07673 F-BAR_FCHO2 The F-BAR 50.5 73 0.0016 34.9 8.6 80 7-93 155-240 (269)
219 PF00509 Hemagglutinin: Haemag 50.4 2.6 5.7E-05 50.1 -2.4 54 165-219 402-460 (550)
220 PF00804 Syntaxin: Syntaxin; 50.3 1.8E+02 0.004 25.7 10.6 59 9-68 10-71 (103)
221 PRK07720 fliJ flagellar biosyn 50.3 2.6E+02 0.0056 27.5 11.7 115 40-188 13-128 (146)
222 KOG0260 RNA polymerase II, lar 50.2 1.1E+02 0.0024 40.2 11.0 8 273-280 1454-1461(1605)
223 PF10168 Nup88: Nuclear pore c 50.1 3.7E+02 0.008 33.9 15.3 23 133-156 636-658 (717)
224 cd07610 FCH_F-BAR The Extended 50.0 2.8E+02 0.006 27.7 16.9 40 11-56 2-41 (191)
225 cd07651 F-BAR_PombeCdc15_like 50.0 95 0.0021 32.9 9.2 28 6-33 111-138 (236)
226 PF13166 AAA_13: AAA domain 50.0 5.6E+02 0.012 31.2 17.2 17 171-187 436-452 (712)
227 PF10211 Ax_dynein_light: Axon 49.8 3.1E+02 0.0067 28.8 12.7 12 6-17 37-48 (189)
228 cd09236 V_AnPalA_UmRIM20_like 49.8 3E+02 0.0065 31.3 13.5 16 199-214 336-351 (353)
229 cd09237 V_ScBro1_like Protein- 49.8 4.3E+02 0.0094 29.9 15.7 46 169-214 305-354 (356)
230 cd07599 BAR_Rvs167p The Bin/Am 49.7 1.6E+02 0.0035 30.7 10.7 27 42-68 5-31 (216)
231 TIGR00255 conserved hypothetic 49.7 1.8E+02 0.0039 32.6 11.5 81 42-155 153-238 (291)
232 PF13863 DUF4200: Domain of un 49.6 1.2E+02 0.0027 28.7 9.1 24 83-106 15-38 (126)
233 PRK00409 recombination and DNA 49.6 4E+02 0.0086 33.8 15.7 21 135-155 575-595 (782)
234 KOG0979 Structural maintenance 49.6 4.5E+02 0.0097 34.5 15.8 26 82-107 248-273 (1072)
235 PF12729 4HB_MCP_1: Four helix 49.5 2.3E+02 0.005 26.6 13.4 15 84-98 84-98 (181)
236 PTZ00009 heat shock 70 kDa pro 49.4 74 0.0016 38.8 9.3 55 41-98 552-612 (653)
237 PF09787 Golgin_A5: Golgin sub 49.1 5.4E+02 0.012 30.8 18.6 26 131-156 282-307 (511)
238 PF06810 Phage_GP20: Phage min 49.1 49 0.0011 33.7 6.6 35 11-50 4-38 (155)
239 KOG0979 Structural maintenance 49.1 2.3E+02 0.005 36.9 13.3 95 38-156 705-799 (1072)
240 PF09731 Mitofilin: Mitochondr 48.9 5.5E+02 0.012 30.8 18.1 13 185-197 414-426 (582)
241 KOG1850 Myosin-like coiled-coi 48.9 4.9E+02 0.011 30.3 15.2 37 172-208 291-328 (391)
242 PF14282 FlxA: FlxA-like prote 48.8 31 0.00068 32.9 4.9 57 136-192 18-77 (106)
243 KOG0681 Actin-related protein 48.7 59 0.0013 39.5 8.0 43 17-61 249-291 (645)
244 KOG0978 E3 ubiquitin ligase in 48.3 6.5E+02 0.014 31.9 16.7 137 52-214 502-642 (698)
245 PF07889 DUF1664: Protein of u 48.2 67 0.0015 32.1 7.2 54 131-195 37-90 (126)
246 COG0598 CorA Mg2+ and Co2+ tra 47.9 69 0.0015 35.6 8.1 63 131-196 148-210 (322)
247 PLN03229 acetyl-coenzyme A car 47.8 3.6E+02 0.0077 34.3 14.5 88 142-236 576-681 (762)
248 PF04286 DUF445: Protein of un 47.7 4.1E+02 0.0088 29.0 15.4 16 41-56 208-223 (367)
249 PRK10865 protein disaggregatio 47.6 4.1E+02 0.0088 34.0 15.4 51 46-106 413-463 (857)
250 PF14817 HAUS5: HAUS augmin-li 47.5 5.1E+02 0.011 32.3 15.8 26 83-108 146-171 (632)
251 KOG0247 Kinesin-like protein [ 47.4 3.5E+02 0.0076 34.3 14.2 35 83-117 542-576 (809)
252 KOG0971 Microtubule-associated 47.4 6.5E+02 0.014 33.0 16.5 25 132-156 327-351 (1243)
253 smart00126 IL6 Interleukin-6 h 47.3 87 0.0019 32.3 8.0 53 12-66 53-106 (154)
254 PRK09793 methyl-accepting prot 47.2 1.5E+02 0.0032 35.0 11.1 65 9-73 81-146 (533)
255 PF04108 APG17: Autophagy prot 47.2 2.6E+02 0.0056 32.6 12.8 126 9-152 251-382 (412)
256 PF01540 Lipoprotein_7: Adhesi 47.1 4.1E+02 0.0089 30.2 13.4 107 132-240 209-320 (353)
257 smart00787 Spc7 Spc7 kinetocho 46.9 4.8E+02 0.01 29.6 15.7 31 127-157 229-259 (312)
258 COG3937 Uncharacterized conser 46.9 1.6E+02 0.0035 29.0 9.3 93 11-153 5-106 (108)
259 PF01920 Prefoldin_2: Prefoldi 46.7 58 0.0012 29.6 6.1 86 51-156 3-88 (106)
260 KOG0260 RNA polymerase II, lar 46.7 3.1E+02 0.0067 36.6 13.9 21 43-63 920-940 (1605)
261 KOG4677 Golgi integral membran 46.2 4.1E+02 0.009 32.1 13.9 36 9-44 189-229 (554)
262 cd07600 BAR_Gvp36 The Bin/Amph 45.7 1.3E+02 0.0028 32.9 9.5 89 9-105 147-235 (242)
263 PF09325 Vps5: Vps5 C terminal 45.5 3.7E+02 0.0079 27.8 16.5 23 135-157 168-190 (236)
264 PF05622 HOOK: HOOK protein; 45.5 7 0.00015 47.8 0.0 21 136-156 362-382 (713)
265 cd07594 BAR_Endophilin_B The B 45.4 1.6E+02 0.0034 32.0 10.0 90 9-105 133-222 (229)
266 PF07072 DUF1342: Protein of u 45.1 30 0.00064 37.0 4.5 47 46-100 39-86 (211)
267 PF03980 Nnf1: Nnf1 ; InterPr 45.1 2.7E+02 0.0059 26.2 12.6 87 42-156 13-99 (109)
268 PF04740 LXG: LXG domain of WX 45.0 1.4E+02 0.0031 30.5 9.3 64 42-105 98-168 (204)
269 PF07200 Mod_r: Modifier of ru 44.8 61 0.0013 31.9 6.4 29 80-108 53-81 (150)
270 PF13654 AAA_32: AAA domain; P 44.5 7.4 0.00016 46.2 0.0 65 47-119 88-157 (509)
271 PF07851 TMPIT: TMPIT-like pro 44.4 28 0.00061 39.6 4.4 72 142-213 2-81 (330)
272 PF06013 WXG100: Proteins of 1 44.2 1.9E+02 0.004 24.4 8.5 64 129-192 10-74 (86)
273 PF09597 IGR: IGR protein moti 44.0 38 0.00082 29.7 4.2 26 67-99 30-55 (57)
274 KOG2072 Translation initiation 43.9 3.3E+02 0.0072 35.0 13.4 38 87-124 620-665 (988)
275 TIGR01069 mutS2 MutS2 family p 43.9 5.3E+02 0.012 32.7 15.5 18 136-153 571-588 (771)
276 cd07655 F-BAR_PACSIN The F-BAR 43.9 1.2E+02 0.0026 32.8 9.0 55 6-60 123-189 (258)
277 KOG1655 Protein involved in va 43.9 1.2E+02 0.0027 32.6 8.7 35 184-218 108-144 (218)
278 smart00806 AIP3 Actin interact 43.9 2.6E+02 0.0057 33.2 12.0 86 129-214 216-317 (426)
279 PF05010 TACC: Transforming ac 43.7 4.5E+02 0.0098 28.4 15.5 42 165-209 160-201 (207)
280 PF02185 HR1: Hr1 repeat; Int 43.6 86 0.0019 27.5 6.5 59 6-69 5-63 (70)
281 cd07649 F-BAR_GAS7 The F-BAR ( 43.4 2.4E+02 0.0051 30.6 11.0 24 6-29 111-134 (233)
282 KOG0239 Kinesin (KAR3 subfamil 43.1 5.6E+02 0.012 32.1 15.3 26 40-65 176-201 (670)
283 COG0216 PrfA Protein chain rel 42.9 2.1E+02 0.0046 33.2 10.9 99 14-157 5-103 (363)
284 TIGR03007 pepcterm_ChnLen poly 42.8 6.1E+02 0.013 29.6 17.1 16 140-155 278-293 (498)
285 cd07675 F-BAR_FNBP1L The F-BAR 42.7 1.4E+02 0.0029 33.0 9.1 34 3-36 114-147 (252)
286 COG4911 Uncharacterized conser 42.6 41 0.00088 33.1 4.6 67 129-202 14-81 (123)
287 PF07083 DUF1351: Protein of u 42.5 2.2E+02 0.0048 30.3 10.5 22 43-64 46-67 (215)
288 PF11500 Cut12: Spindle pole b 42.4 72 0.0016 32.9 6.5 27 42-68 76-102 (152)
289 PF15294 Leu_zip: Leucine zipp 42.3 3.2E+02 0.0069 30.9 11.9 98 48-156 130-227 (278)
290 KOG2273 Membrane coat complex 42.2 1.5E+02 0.0032 34.9 10.0 38 183-220 431-469 (503)
291 TIGR01843 type_I_hlyD type I s 41.9 3.5E+02 0.0076 30.1 12.4 25 40-64 82-106 (423)
292 PRK13182 racA polar chromosome 41.8 62 0.0013 33.7 6.2 49 56-107 95-143 (175)
293 PF15005 IZUMO: Izumo sperm-eg 41.6 60 0.0013 33.6 5.9 89 11-122 34-132 (160)
294 PLN03223 Polycystin cation cha 41.6 3.4E+02 0.0074 36.8 13.4 54 47-105 1442-1516(1634)
295 PF09728 Taxilin: Myosin-like 41.5 5.7E+02 0.012 28.9 14.8 27 169-195 282-308 (309)
296 TIGR01541 tape_meas_lam_C phag 41.3 6E+02 0.013 29.1 15.5 24 200-223 177-200 (332)
297 PF10368 YkyA: Putative cell-w 41.2 24 0.00052 37.3 3.2 60 47-116 83-143 (204)
298 cd07664 BAR_SNX2 The Bin/Amphi 41.0 4.7E+02 0.01 28.5 12.7 16 83-98 181-196 (234)
299 PF04943 Pox_F11: Poxvirus F11 41.0 1E+02 0.0023 35.7 8.2 93 6-101 219-316 (366)
300 cd00238 ERp29c ERp29 and ERp38 40.9 1.2E+02 0.0026 28.6 7.3 39 171-209 48-87 (93)
301 PF10174 Cast: RIM-binding pro 40.8 9E+02 0.019 31.0 19.1 67 125-191 460-539 (775)
302 COG0497 RecN ATPase involved i 40.8 3.7E+02 0.008 33.1 13.0 64 5-68 167-230 (557)
303 cd01111 HTH_MerD Helix-Turn-He 40.6 65 0.0014 30.6 5.6 29 38-66 79-107 (107)
304 cd07623 BAR_SNX1_2 The Bin/Amp 40.4 4.2E+02 0.009 28.2 12.1 106 1-151 108-218 (224)
305 TIGR02231 conserved hypothetic 40.3 3.2E+02 0.0068 32.5 12.3 24 171-194 150-173 (525)
306 COG2433 Uncharacterized conser 40.2 5E+02 0.011 32.4 13.8 22 133-154 470-491 (652)
307 cd07665 BAR_SNX1 The Bin/Amphi 40.1 2.1E+02 0.0045 31.3 9.9 71 54-153 160-230 (234)
308 PF10146 zf-C4H2: Zinc finger- 40.0 4.8E+02 0.01 28.5 12.6 18 137-154 53-70 (230)
309 cd07676 F-BAR_FBP17 The F-BAR 39.9 1.9E+02 0.004 31.7 9.6 34 4-37 116-149 (253)
310 PRK09546 zntB zinc transporter 39.6 2.5E+02 0.0053 31.1 10.7 58 134-195 154-211 (324)
311 KOG0163 Myosin class VI heavy 39.5 3.9E+02 0.0084 34.3 12.9 24 515-538 1212-1236(1259)
312 PF09325 Vps5: Vps5 C terminal 39.3 4.5E+02 0.0099 27.2 15.9 53 164-216 161-219 (236)
313 PF07083 DUF1351: Protein of u 39.3 5.1E+02 0.011 27.7 16.6 23 188-210 188-210 (215)
314 PF06248 Zw10: Centromere/kine 39.2 4.1E+02 0.009 32.1 13.3 52 47-105 11-62 (593)
315 PRK11281 hypothetical protein; 39.2 1.1E+03 0.024 31.5 18.3 56 44-107 126-181 (1113)
316 cd07909 YciF YciF bacterial st 39.2 1.3E+02 0.0028 30.6 7.7 48 169-216 36-85 (147)
317 KOG3270 Uncharacterized conser 39.2 53 0.0011 36.2 5.3 66 17-100 89-154 (244)
318 PF02601 Exonuc_VII_L: Exonucl 39.1 4.9E+02 0.011 28.7 12.8 15 177-191 258-272 (319)
319 cd07647 F-BAR_PSTPIP The F-BAR 39.1 2.5E+02 0.0054 30.0 10.3 14 84-97 183-196 (239)
320 COG1579 Zn-ribbon protein, pos 38.9 5.8E+02 0.013 28.3 15.2 27 6-33 11-37 (239)
321 PF15254 CCDC14: Coiled-coil d 38.7 6.8E+02 0.015 32.2 14.8 60 9-68 356-420 (861)
322 PF06729 CENP-R: Kinetochore c 38.5 73 0.0016 32.4 5.7 57 9-65 59-124 (139)
323 PF05008 V-SNARE: Vesicle tran 38.4 1.9E+02 0.004 25.5 7.8 53 11-63 23-78 (79)
324 TIGR02132 phaR_Bmeg polyhydrox 38.3 4E+02 0.0086 28.6 11.1 106 81-214 45-156 (189)
325 PF00435 Spectrin: Spectrin re 38.1 2.3E+02 0.005 24.3 8.3 41 168-210 43-83 (105)
326 PF04136 Sec34: Sec34-like fam 38.1 1.6E+02 0.0036 29.9 8.4 68 131-198 15-91 (157)
327 cd07666 BAR_SNX7 The Bin/Amphi 37.9 5.6E+02 0.012 28.3 12.8 68 147-216 159-226 (243)
328 PF12889 DUF3829: Protein of u 37.9 5.2E+02 0.011 27.4 12.4 29 47-75 80-108 (276)
329 PF14389 Lzipper-MIP1: Leucine 37.6 3.5E+02 0.0075 25.3 10.4 14 43-56 8-21 (88)
330 PF06810 Phage_GP20: Phage min 37.6 35 0.00077 34.7 3.6 50 170-221 86-137 (155)
331 COG5394 Uncharacterized protei 37.6 2.2E+02 0.0047 30.1 9.1 93 43-155 99-192 (193)
332 KOG0977 Nuclear envelope prote 37.5 1.7E+02 0.0037 35.7 9.6 48 46-96 222-274 (546)
333 KOG2273 Membrane coat complex 37.4 7.6E+02 0.016 29.2 16.6 34 173-218 449-482 (503)
334 PF05565 Sipho_Gp157: Siphovir 37.4 2.1E+02 0.0046 29.2 9.0 17 83-99 65-81 (162)
335 KOG0963 Transcription factor/C 37.0 9.4E+02 0.02 30.1 15.9 140 39-194 288-439 (629)
336 PF05701 WEMBL: Weak chloropla 37.0 8.2E+02 0.018 29.5 16.4 22 41-62 213-234 (522)
337 PRK10869 recombination and rep 36.9 4.6E+02 0.01 31.7 13.1 24 130-153 272-295 (553)
338 PF05266 DUF724: Protein of un 36.9 5.1E+02 0.011 27.5 12.0 119 46-215 53-174 (190)
339 cd08915 V_Alix_like Protein-in 36.8 6.5E+02 0.014 28.2 16.7 16 199-214 325-340 (342)
340 PRK00409 recombination and DNA 36.8 4.5E+02 0.0098 33.3 13.4 23 11-33 504-526 (782)
341 PF02050 FliJ: Flagellar FliJ 36.7 1.9E+02 0.0041 25.9 7.8 31 126-156 48-78 (123)
342 KOG0978 E3 ubiquitin ligase in 36.4 9.4E+02 0.02 30.6 15.6 180 10-193 354-572 (698)
343 PRK13415 flagella biosynthesis 36.3 74 0.0016 34.6 5.8 52 9-62 144-206 (219)
344 PF00489 IL6: Interleukin-6/G- 36.2 1.4E+02 0.003 30.4 7.5 53 11-65 52-105 (154)
345 KOG4429 Uncharacterized conser 35.9 3.5E+02 0.0075 31.1 10.9 27 166-192 140-166 (421)
346 PF03528 Rabaptin: Rabaptin; 35.6 1.5E+02 0.0033 29.0 7.2 33 3-35 18-50 (106)
347 PF11559 ADIP: Afadin- and alp 35.5 2.2E+02 0.0047 28.2 8.6 83 5-100 62-147 (151)
348 PF10481 CENP-F_N: Cenp-F N-te 35.4 3.6E+02 0.0078 30.6 10.9 31 126-156 91-121 (307)
349 PF09074 Mer2: Mer2; InterPro 35.4 2.7E+02 0.0058 29.9 9.5 26 124-149 143-168 (190)
350 PF09177 Syntaxin-6_N: Syntaxi 35.3 1.8E+02 0.004 27.0 7.6 46 167-212 40-89 (97)
351 PF12325 TMF_TATA_bd: TATA ele 35.3 1.4E+02 0.003 29.5 7.1 37 176-215 75-111 (120)
352 PRK11820 hypothetical protein; 35.1 4.6E+02 0.0099 29.5 11.9 111 42-186 151-288 (288)
353 PF05008 V-SNARE: Vesicle tran 34.8 2.3E+02 0.0051 24.9 7.9 58 126-190 21-78 (79)
354 cd00089 HR1 Protein kinase C-r 34.7 1.9E+02 0.0041 25.5 7.2 26 40-65 43-68 (72)
355 PF10018 Med4: Vitamin-D-recep 34.7 1.7E+02 0.0037 30.4 8.0 55 10-66 9-63 (188)
356 PF05852 DUF848: Gammaherpesvi 34.6 1.7E+02 0.0037 30.2 7.7 23 134-156 58-80 (146)
357 PF10473 CENP-F_leu_zip: Leuci 34.3 1.5E+02 0.0032 30.2 7.2 82 101-188 29-116 (140)
358 PF03938 OmpH: Outer membrane 34.3 3.3E+02 0.0072 26.6 9.7 59 10-74 23-81 (158)
359 COG3352 FlaC Putative archaeal 34.0 3.5E+02 0.0076 28.3 9.8 93 89-194 44-136 (157)
360 PRK13411 molecular chaperone D 33.7 1.5E+02 0.0032 36.4 8.5 40 50-93 555-594 (653)
361 PF00038 Filament: Intermediat 33.6 6.6E+02 0.014 27.4 15.9 31 126-156 184-214 (312)
362 TIGR03687 pupylate_cterm ubiqu 33.5 15 0.00032 29.1 0.1 22 200-221 3-24 (33)
363 PRK12751 cpxP periplasmic stre 33.5 1.1E+02 0.0025 31.5 6.5 58 11-72 105-162 (162)
364 cd04770 HTH_HMRTR Helix-Turn-H 33.5 82 0.0018 30.0 5.1 23 45-67 88-110 (123)
365 PF13747 DUF4164: Domain of un 33.2 3.2E+02 0.007 25.6 8.8 57 10-72 5-61 (89)
366 PF03993 DUF349: Domain of Unk 33.1 2.7E+02 0.0059 24.0 7.9 33 41-73 22-54 (77)
367 PRK10869 recombination and rep 33.1 7.5E+02 0.016 30.0 14.1 44 167-210 262-306 (553)
368 PRK10361 DNA recombination pro 33.1 9.3E+02 0.02 29.2 14.5 32 131-162 134-165 (475)
369 COG4477 EzrA Negative regulato 33.1 1E+03 0.022 29.4 16.1 56 9-68 167-222 (570)
370 PF02388 FemAB: FemAB family; 33.0 1E+02 0.0022 35.5 6.8 62 129-195 241-302 (406)
371 PF02996 Prefoldin: Prefoldin 33.0 61 0.0013 30.4 4.2 32 125-156 72-103 (120)
372 PF04111 APG6: Autophagy prote 32.8 7.3E+02 0.016 28.1 13.1 23 11-33 14-36 (314)
373 KOG2991 Splicing regulator [RN 32.7 1.1E+02 0.0024 34.2 6.5 93 42-156 180-276 (330)
374 PTZ00432 falcilysin; Provision 32.7 2.7E+02 0.006 36.5 11.0 49 40-92 492-546 (1119)
375 PF05377 FlaC_arch: Flagella a 32.6 1.6E+02 0.0036 25.8 6.2 48 139-194 2-49 (55)
376 COG4913 Uncharacterized protei 32.6 5.2E+02 0.011 33.1 12.5 158 14-197 230-415 (1104)
377 PF00261 Tropomyosin: Tropomyo 32.6 6.5E+02 0.014 27.0 12.7 150 7-194 6-155 (237)
378 PRK04406 hypothetical protein; 32.5 1.5E+02 0.0033 27.0 6.4 47 138-192 5-51 (75)
379 PF08376 NIT: Nitrate and nitr 32.5 2.2E+02 0.0048 29.1 8.4 81 17-105 158-239 (247)
380 smart00503 SynN Syntaxin N-ter 32.5 1.4E+02 0.0031 27.4 6.5 57 7-63 51-113 (117)
381 PRK10947 global DNA-binding tr 32.4 1.5E+02 0.0033 29.9 7.0 31 172-202 45-75 (135)
382 PF04286 DUF445: Protein of un 32.3 3.9E+02 0.0084 29.1 10.7 23 122-144 202-224 (367)
383 PF02609 Exonuc_VII_S: Exonucl 32.3 73 0.0016 26.8 4.1 36 180-215 3-39 (53)
384 KOG0946 ER-Golgi vesicle-tethe 32.3 1.2E+03 0.026 30.4 15.5 78 132-210 864-952 (970)
385 cd07627 BAR_Vps5p The Bin/Amph 32.1 6.3E+02 0.014 26.7 15.7 77 139-216 117-199 (216)
386 PF11068 YlqD: YlqD protein; 32.1 2.6E+02 0.0057 28.1 8.5 50 126-175 16-65 (131)
387 KOG0964 Structural maintenance 32.0 5.9E+02 0.013 33.5 13.1 149 41-216 673-825 (1200)
388 PRK03598 putative efflux pump 32.0 6.8E+02 0.015 27.6 12.6 45 141-188 156-200 (331)
389 PRK10328 DNA binding protein, 32.0 1.5E+02 0.0033 29.8 6.9 54 131-202 22-75 (134)
390 cd07634 BAR_GAP10-like The Bin 31.9 6.9E+02 0.015 27.1 13.2 66 146-215 120-188 (207)
391 KOG1854 Mitochondrial inner me 31.4 1E+03 0.023 29.9 14.7 62 83-156 276-337 (657)
392 KOG3726 Uncharacterized conser 31.3 4.9E+02 0.011 32.8 12.0 87 128-218 308-406 (717)
393 PRK14011 prefoldin subunit alp 31.2 1.9E+02 0.0041 29.4 7.5 32 125-156 83-114 (144)
394 PF03148 Tektin: Tektin family 31.2 7.9E+02 0.017 28.4 13.3 125 2-156 218-350 (384)
395 PF08397 IMD: IRSp53/MIM homol 31.2 3.6E+02 0.0078 28.5 9.9 25 83-115 62-86 (219)
396 PF05957 DUF883: Bacterial pro 31.1 1.7E+02 0.0036 27.0 6.6 68 140-216 1-72 (94)
397 PF15456 Uds1: Up-regulated Du 31.1 5.4E+02 0.012 25.7 10.4 18 46-63 25-42 (124)
398 KOG2391 Vacuolar sorting prote 31.0 2.6E+02 0.0057 32.4 9.2 18 83-100 215-232 (365)
399 cd07636 BAR_GRAF The Bin/Amphi 31.0 7.2E+02 0.016 27.0 15.2 68 145-215 119-188 (207)
400 PF10112 Halogen_Hydrol: 5-bro 30.8 1.6E+02 0.0034 30.5 7.0 84 133-216 71-172 (199)
401 PF09210 DUF1957: Domain of un 30.8 71 0.0015 30.7 4.2 36 171-206 53-88 (102)
402 PF05149 Flagellar_rod: Parafl 30.8 8.5E+02 0.018 27.7 15.9 42 166-214 98-139 (289)
403 KOG0239 Kinesin (KAR3 subfamil 30.7 4.2E+02 0.0091 33.2 11.6 18 139-156 243-260 (670)
404 cd07676 F-BAR_FBP17 The F-BAR 30.5 7.6E+02 0.016 27.1 15.0 65 23-97 67-132 (253)
405 PF10359 Fmp27_WPPW: RNA pol I 30.5 1.2E+02 0.0025 36.0 6.8 65 132-198 165-232 (475)
406 PF08514 STAG: STAG domain ; 30.5 97 0.0021 30.2 5.2 49 127-176 69-117 (118)
407 PRK15041 methyl-accepting chem 30.4 3.5E+02 0.0077 32.2 10.7 61 10-70 86-147 (554)
408 TIGR02350 prok_dnaK chaperone 30.3 2.3E+02 0.005 34.0 9.3 17 198-214 571-587 (595)
409 KOG0018 Structural maintenance 30.2 9.5E+02 0.021 32.0 14.6 50 100-155 385-434 (1141)
410 PF12848 ABC_tran_2: ABC trans 30.2 1.7E+02 0.0036 25.9 6.2 32 40-71 21-52 (85)
411 PF15397 DUF4618: Domain of un 30.1 8.3E+02 0.018 27.4 14.7 164 5-195 23-215 (258)
412 cd01107 HTH_BmrR Helix-Turn-He 30.0 1.1E+02 0.0024 28.8 5.3 25 43-67 82-106 (108)
413 PF04949 Transcrip_act: Transc 29.9 1.4E+02 0.0031 31.0 6.3 56 83-147 46-101 (159)
414 KOG4302 Microtubule-associated 29.8 4.5E+02 0.0098 33.0 11.6 68 5-72 170-266 (660)
415 KOG1103 Predicted coiled-coil 29.7 6.2E+02 0.014 29.8 11.8 19 42-60 110-128 (561)
416 PF05557 MAD: Mitotic checkpoi 29.7 18 0.00038 44.4 0.0 52 5-56 96-152 (722)
417 PF13863 DUF4200: Domain of un 29.6 4.9E+02 0.011 24.7 9.7 42 56-105 17-58 (126)
418 PRK13729 conjugal transfer pil 29.6 1.1E+02 0.0024 36.6 6.4 31 126-156 65-95 (475)
419 COG5481 Uncharacterized conser 29.6 2.4E+02 0.0053 25.4 6.8 31 7-37 5-35 (67)
420 KOG4484 Uncharacterized conser 29.6 1.4E+02 0.0031 31.6 6.3 33 180-214 93-130 (199)
421 PF03234 CDC37_N: Cdc37 N term 29.5 5.8E+02 0.012 27.0 10.8 21 171-191 129-149 (177)
422 PF07352 Phage_Mu_Gam: Bacteri 29.4 2.8E+02 0.006 27.7 8.3 62 130-218 3-64 (149)
423 PF02203 TarH: Tar ligand bind 29.4 3.5E+02 0.0076 26.2 8.8 62 12-73 81-144 (171)
424 PF01044 Vinculin: Vinculin fa 29.3 1.4E+03 0.031 29.8 17.1 146 55-207 384-554 (968)
425 KOG1451 Oligophrenin-1 and rel 29.2 5.9E+02 0.013 31.9 12.0 153 9-190 27-183 (812)
426 TIGR00962 atpA proton transloc 29.2 4.8E+02 0.01 31.6 11.5 121 83-215 373-498 (501)
427 PF02646 RmuC: RmuC family; I 29.2 1.3E+02 0.0028 33.5 6.5 47 8-59 1-47 (304)
428 PF01627 Hpt: Hpt domain; Int 29.2 2.1E+02 0.0045 24.4 6.5 79 134-214 2-85 (90)
429 cd07654 F-BAR_FCHSD The F-BAR 29.1 1.3E+02 0.0028 33.2 6.4 38 5-47 120-157 (264)
430 KOG1265 Phospholipase C [Lipid 29.1 7.3E+02 0.016 32.5 13.1 50 93-156 1101-1151(1189)
431 KOG0243 Kinesin-like protein [ 29.0 1.1E+03 0.023 31.5 14.8 64 5-68 479-550 (1041)
432 TIGR02350 prok_dnaK chaperone 28.9 2.4E+02 0.0051 33.9 9.0 50 41-96 538-591 (595)
433 COG3945 Uncharacterized conser 28.7 1.4E+02 0.003 31.9 6.1 49 169-217 8-59 (189)
434 PF10224 DUF2205: Predicted co 28.6 2.3E+02 0.005 26.4 6.9 48 11-71 18-69 (80)
435 COG4079 Uncharacterized protei 28.3 1.7E+02 0.0037 32.6 7.0 48 17-64 147-205 (293)
436 cd07672 F-BAR_PSTPIP2 The F-BA 28.3 5.4E+02 0.012 28.0 10.8 13 84-96 184-196 (240)
437 KOG3771 Amphiphysin [Intracell 28.1 1.1E+03 0.025 28.4 27.2 28 5-32 4-39 (460)
438 PF09548 Spore_III_AB: Stage I 27.9 3.3E+02 0.0071 27.8 8.6 30 4-33 59-93 (170)
439 cd04787 HTH_HMRTR_unk Helix-Tu 27.7 1.1E+02 0.0023 30.0 5.0 22 45-66 88-109 (133)
440 PF11932 DUF3450: Protein of u 27.7 1.2E+02 0.0026 32.5 5.8 88 40-178 50-143 (251)
441 PF06698 DUF1192: Protein of u 27.6 1.4E+02 0.0029 26.6 5.0 20 138-157 22-41 (59)
442 KOG4673 Transcription factor T 27.6 6.8E+02 0.015 31.9 12.2 134 10-158 485-633 (961)
443 PRK12705 hypothetical protein; 27.4 6E+02 0.013 30.9 11.8 26 189-214 259-284 (508)
444 KOG2685 Cystoskeletal protein 27.3 1.1E+03 0.025 28.1 16.9 159 1-206 244-406 (421)
445 PF05781 MRVI1: MRVI1 protein; 27.2 5.8E+02 0.013 31.3 11.6 31 126-156 251-281 (538)
446 PRK03830 small acid-soluble sp 27.2 2.3E+02 0.0049 26.3 6.4 52 5-63 12-63 (73)
447 PF08946 Osmo_CC: Osmosensory 27.1 39 0.00085 28.6 1.6 32 128-159 3-34 (46)
448 KOG0995 Centromere-associated 26.9 8.5E+02 0.018 30.2 12.8 43 72-117 286-331 (581)
449 KOG1265 Phospholipase C [Lipid 26.8 1E+03 0.022 31.4 13.7 32 41-75 1084-1116(1189)
450 PRK15422 septal ring assembly 26.7 2.7E+02 0.0058 26.2 6.9 33 125-157 13-45 (79)
451 TIGR01280 xseB exodeoxyribonuc 26.6 86 0.0019 28.0 3.7 37 181-217 6-43 (67)
452 KOG0999 Microtubule-associated 26.5 9.6E+02 0.021 30.0 13.0 54 5-66 11-66 (772)
453 KOG4302 Microtubule-associated 26.5 1.4E+03 0.03 28.9 17.2 22 80-101 108-129 (660)
454 COG0249 MutS Mismatch repair A 26.5 1.2E+03 0.026 30.2 14.7 164 19-193 366-550 (843)
455 PRK08476 F0F1 ATP synthase sub 26.4 3.7E+02 0.0081 26.7 8.5 9 137-145 107-115 (141)
456 PF04012 PspA_IM30: PspA/IM30 26.3 4.9E+02 0.011 27.2 9.8 116 55-193 3-125 (221)
457 TIGR00383 corA magnesium Mg(2+ 26.1 3.4E+02 0.0073 29.6 8.9 64 132-195 137-204 (318)
458 PRK00977 exodeoxyribonuclease 25.9 86 0.0019 28.9 3.7 36 181-216 15-51 (80)
459 PF07061 Swi5: Swi5; InterPro 25.8 1.4E+02 0.003 27.9 5.0 24 42-75 32-55 (83)
460 cd07680 F-BAR_PACSIN1 The F-BA 25.8 9.5E+02 0.021 26.7 17.5 147 12-210 8-178 (258)
461 cd01108 HTH_CueR Helix-Turn-He 25.8 1.3E+02 0.0028 29.1 5.1 23 45-67 88-110 (127)
462 PF04791 LMBR1: LMBR1-like mem 25.6 2.4E+02 0.0053 32.5 8.1 25 4-28 198-222 (471)
463 cd01109 HTH_YyaN Helix-Turn-He 25.6 1.5E+02 0.0032 28.1 5.3 21 46-66 89-109 (113)
464 PLN03188 kinesin-12 family pro 25.5 1.6E+02 0.0034 39.2 7.1 33 124-156 878-910 (1320)
465 PF08580 KAR9: Yeast cortical 25.5 4E+02 0.0088 33.4 10.3 130 2-192 29-174 (683)
466 PRK00290 dnaK molecular chaper 25.5 2.9E+02 0.0062 33.6 9.0 21 50-70 553-573 (627)
467 PHA03247 large tegument protei 25.5 7.6E+02 0.016 36.0 13.1 20 814-833 3111-3130(3151)
468 PF01496 V_ATPase_I: V-type AT 25.5 2.8E+02 0.0061 34.5 9.1 98 4-117 199-298 (759)
469 TIGR02044 CueR Cu(I)-responsiv 25.4 1.2E+02 0.0027 29.2 4.9 26 43-68 86-111 (127)
470 PF10136 SpecificRecomb: Site- 25.4 3.5E+02 0.0075 33.8 9.6 89 126-216 188-289 (643)
471 TIGR01010 BexC_CtrB_KpsE polys 25.4 5.1E+02 0.011 29.1 10.4 87 124-210 164-252 (362)
472 cd07307 BAR The Bin/Amphiphysi 25.4 6E+02 0.013 24.3 16.0 25 43-67 65-90 (194)
473 PF07464 ApoLp-III: Apolipopho 25.4 7.7E+02 0.017 25.5 12.0 111 16-155 3-117 (155)
474 PF10805 DUF2730: Protein of u 25.3 1.8E+02 0.0039 27.8 5.9 67 127-193 32-99 (106)
475 PRK14066 exodeoxyribonuclease 25.2 92 0.002 28.5 3.7 37 180-216 8-45 (75)
476 KOG0103 Molecular chaperones H 25.1 7.2E+02 0.016 31.6 12.0 66 41-113 586-657 (727)
477 PRK07737 fliD flagellar cappin 24.9 1.3E+03 0.027 27.9 14.5 28 7-34 266-293 (501)
478 PRK01433 hscA chaperone protei 24.8 3.1E+02 0.0066 33.5 9.0 13 7-19 483-495 (595)
479 PF10458 Val_tRNA-synt_C: Valy 24.6 4E+02 0.0087 23.3 7.4 56 137-192 4-65 (66)
480 COG4477 EzrA Negative regulato 24.6 1.4E+03 0.031 28.3 15.6 83 131-216 158-245 (570)
481 PF05557 MAD: Mitotic checkpoi 24.6 25 0.00054 43.2 0.0 23 4-27 266-288 (722)
482 cd08915 V_Alix_like Protein-in 24.6 1E+03 0.022 26.7 16.5 111 42-156 94-219 (342)
483 PF10186 Atg14: UV radiation r 24.5 8.7E+02 0.019 25.8 11.7 30 127-156 67-96 (302)
484 cd07681 F-BAR_PACSIN3 The F-BA 24.3 9.7E+02 0.021 26.7 11.9 108 7-151 124-243 (258)
485 KOG4348 Adaptor protein CMS/SE 24.2 1.1E+02 0.0024 36.4 5.0 33 124-156 556-588 (627)
486 PF00816 Histone_HNS: H-NS his 24.2 57 0.0012 30.0 2.2 16 141-156 2-17 (93)
487 PF10234 Cluap1: Clusterin-ass 24.1 1.1E+03 0.023 26.7 13.1 81 129-217 161-246 (267)
488 PRK13343 F0F1 ATP synthase sub 24.0 6.1E+02 0.013 30.8 11.1 120 86-215 377-499 (502)
489 PRK13923 putative spore coat p 23.9 6.7E+02 0.014 26.6 10.0 49 12-64 18-76 (170)
490 PF08376 NIT: Nitrate and nitr 23.9 7.9E+02 0.017 25.1 11.9 45 52-103 5-49 (247)
491 COG5259 RSC8 RSC chromatin rem 23.9 4.6E+02 0.0099 31.8 9.7 125 17-192 289-464 (531)
492 COG1722 XseB Exonuclease VII s 23.8 1.3E+02 0.0027 28.1 4.3 39 178-216 12-51 (81)
493 PF15066 CAGE1: Cancer-associa 23.7 9.6E+02 0.021 29.3 12.2 33 125-157 466-498 (527)
494 PF03105 SPX: SPX domain; Int 23.7 5.9E+02 0.013 26.3 9.8 32 126-157 102-133 (275)
495 PRK05183 hscA chaperone protei 23.6 2.3E+02 0.0049 34.6 7.7 21 50-70 557-577 (616)
496 PF07139 DUF1387: Protein of u 23.6 4.6E+02 0.0099 30.0 9.4 31 42-72 156-186 (302)
497 cd07591 BAR_Rvs161p The Bin/Am 23.5 7.8E+02 0.017 26.5 10.8 35 24-67 12-46 (224)
498 PRK00578 prfB peptide chain re 23.5 6.6E+02 0.014 29.4 10.9 105 11-156 2-111 (367)
499 COG2924 Uncharacterized protei 23.4 59 0.0013 30.7 2.2 26 85-110 60-85 (90)
500 cd07596 BAR_SNX The Bin/Amphip 23.4 7.6E+02 0.017 24.7 14.3 165 6-194 22-196 (218)
No 1
>KOG2150 consensus CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=100.00 E-value=1.7e-117 Score=985.97 Aligned_cols=222 Identities=61% Similarity=0.876 Sum_probs=214.7
Q ss_pred ccccchhhhHHHHhhhHHHhHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhHHHHHHhhccccccccccchhhH
Q 002678 2 GASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYE 81 (893)
Q Consensus 2 aa~RKLQ~EIDr~lKKV~EGve~Fd~i~eK~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~eIKDK~~~~~~~ 81 (893)
|++||||+|||||||||+|||++||+||+||++++|.|||||||+|||||||||||||||||||++++|||||+
T Consensus 1 ~~~RKLq~eIdr~lkKv~Egve~Fd~i~ek~~~~~n~sqkeK~e~DLKkEIKKLQRlRdQIKtW~ss~dIKDK~------ 74 (575)
T KOG2150|consen 1 MAKRKLQQEIDRCLKKVDEGVEIFDEIYEKLHSANNVSQKEKLESDLKKEIKKLQRLRDQIKTWQSSSDIKDKD------ 74 (575)
T ss_pred CchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccHH------
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCCCchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccC
Q 002678 82 QALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKG 161 (893)
Q Consensus 82 ~~L~e~RKlIE~~MErFK~vEKesKtKafSkEGL~~~~k~DP~ekek~E~~~wL~~~IdeL~~QiE~~EaEiE~Ls~KK~ 161 (893)
.|++||||||.+|||||+|||||||||||||||+.++|+||+|+||.|+++||+++||+|++|+|.||+|
T Consensus 75 -~L~d~RrlIE~~MErfK~vEke~KtKa~SkegL~~~~klDPkEkek~d~~~wi~~~ideLe~q~d~~ea~--------- 144 (575)
T KOG2150|consen 75 -SLLDNRRLIEQRMERFKAVEKEMKTKAFSKEGLSAAEKLDPKEKEKRDTMDWISNQIDELERQVDSFEAE--------- 144 (575)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHhhccccchhhccccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Confidence 9999999999999999999999999999999999999999999999999999999999999999999994
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhhhhhhhHHHHHHHhCCCCccccCCCcccccCCCCCCcccc
Q 002678 162 KTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQDDFEEFSDVDELYHLLPLDKVESL 241 (893)
Q Consensus 162 K~~~~r~~~le~~ierhk~Hi~kLE~lLRlLdN~~l~pe~V~~IKddieyYve~nqddf~ef~dde~iYd~L~Lde~~~~ 241 (893)
++++.|+||+|||.+||+|||+|+|++++|+.|++++|||.||||+|++ +||.++++||++|+|++.+..
T Consensus 145 --------~~e~~~erh~~H~~~lEliLr~L~N~E~~pe~v~~vqDdi~yyVe~nqd--pdF~e~e~iYd~l~le~~e~~ 214 (575)
T KOG2150|consen 145 --------ELERFIERHRWHQQKLELILRLLDNDELDPEAVNKVQDDITYYVESNQD--PDFLEDETIYDDLNLEELEAS 214 (575)
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHHhhccccCHHHHhhhhHHHHHHHHhccC--chhhhhhHHhhccCchhhhhh
Confidence 7999999999999999999999999999999999999999999999999 356679999999999999988
Q ss_pred ccccccCC
Q 002678 242 EDLVTIGP 249 (893)
Q Consensus 242 ~~~~~~~~ 249 (893)
.++++.+.
T Consensus 215 ~~~~~~~~ 222 (575)
T KOG2150|consen 215 MDAVAPGS 222 (575)
T ss_pred HhhhcCCc
Confidence 88876554
No 2
>COG5665 NOT5 CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=100.00 E-value=4.1e-94 Score=766.28 Aligned_cols=197 Identities=46% Similarity=0.736 Sum_probs=191.9
Q ss_pred HHHhhhHHHhHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhHHHHHHhhccccccccccchhhHHHHHHHHHHH
Q 002678 12 DRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLI 91 (893)
Q Consensus 12 Dr~lKKV~EGve~Fd~i~eK~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~eIKDK~~~~~~~~~L~e~RKlI 91 (893)
+++||+|-|||+.||+||+|+.+++|.+||||||+|||+|||||||+|||||||++++|||||+ .|+++||||
T Consensus 1 ~~~~~~~~e~i~~fd~iyek~~~s~~~s~~ekle~dlk~~ikklq~~rdqiktw~s~~dikdk~-------~l~~nrrli 73 (548)
T COG5665 1 DKLLKKVKEGIEDFDDIYEKFQSTDNSSHREKLESDLKREIKKLQKHRDQIKTWLSKEDVKDKQ-------VLMTNRRLI 73 (548)
T ss_pred ChhHHHHHhhhhhHHHHHHHHhccCchhHHHHHhhHHHHHHHHHHHHHHHHHHhhcccccchHH-------HHHHhHHHH
Confidence 4789999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred HHHHHHHHHHHhhhccccccccccCCCCCCCchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCchhHHHH
Q 002678 92 EREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHL 171 (893)
Q Consensus 92 E~~MErFK~vEKesKtKafSkEGL~~~~k~DP~ekek~E~~~wL~~~IdeL~~QiE~~EaEiE~Ls~KK~K~~~~r~~~l 171 (893)
|..|||||.|||+||+|+||||||..+.++||+|++|.+...||.+|++||++|.|.+||| ++
T Consensus 74 e~~me~fk~ve~~mk~k~fske~ls~~~~~dpke~~k~d~i~~i~~~~~el~~q~e~~ea~-----------------e~ 136 (548)
T COG5665 74 ENGMERFKSVEKLMKTKQFSKEALTNPDIIDPKELKKRDQVLFIHDCLDELQKQLEQYEAQ-----------------EN 136 (548)
T ss_pred HhHHHHHHHHHHHHHHHHhhHhhccCcccCChhHhccccceehHHHHHHHHHHHHHHHHHH-----------------Hh
Confidence 9999999999999999999999999999999999999999999999999999999999998 68
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhCCCCChhhhhhhhhHHHHHHHhCCCCccccCCCcccccCCC
Q 002678 172 ETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQDDFEEFSDVDELYHLLP 234 (893)
Q Consensus 172 e~~ierhk~Hi~kLE~lLRlLdN~~l~pe~V~~IKddieyYve~nqddf~ef~dde~iYd~L~ 234 (893)
+..++||+|||.+||+|||.|+|.+++||-|++|+|||.||||+|++ +||.|+|+|||+||
T Consensus 137 e~~~erh~~h~~~le~i~~~l~n~~~~pe~v~~~q~di~yyve~~~~--~df~e~~~~y~~~~ 197 (548)
T COG5665 137 EEQTERHEFHIANLENILKKLQNNEMDPEPVEEFQDDIKYYVENNDD--PDFIEYDTIYEDMG 197 (548)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHhhcCCC--cchhhhhhHHHhhc
Confidence 99999999999999999999999999999999999999999999998 25566899999999
No 3
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=100.00 E-value=8.2e-88 Score=693.33 Aligned_cols=228 Identities=62% Similarity=0.908 Sum_probs=217.7
Q ss_pred ccccchhhhHHHHhhhHHHhHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhHHHHHHhhccccccccccchhhH
Q 002678 2 GASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYE 81 (893)
Q Consensus 2 aa~RKLQ~EIDr~lKKV~EGve~Fd~i~eK~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~eIKDK~~~~~~~ 81 (893)
|++||||+|||||||||+|||+.||+||+||++++|++||||||+|||||||||||||||||+|++++|||||+
T Consensus 1 m~~RKLQ~Eid~~lKkv~EG~~~F~~i~~K~~~~~n~~QKEK~E~DLKkEIKKLQR~RdQIK~W~~~~diKdk~------ 74 (233)
T PF04065_consen 1 MAKRKLQQEIDRTLKKVQEGVEEFDEIYEKVESATNQNQKEKLEADLKKEIKKLQRLRDQIKTWLSSNDIKDKK------ 74 (233)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHccCcccccHH------
Confidence 45699999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCCCchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccC
Q 002678 82 QALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKG 161 (893)
Q Consensus 82 ~~L~e~RKlIE~~MErFK~vEKesKtKafSkEGL~~~~k~DP~ekek~E~~~wL~~~IdeL~~QiE~~EaEiE~Ls~KK~ 161 (893)
+|+|+||+||++|||||+|||+|||||||||||++++++||++++|.|+++||+++|++|++|||.||+|+|+|+.+++
T Consensus 75 -~L~e~Rk~IE~~MErFK~vEkesKtKafSkeGL~~~~k~dp~e~ek~e~~~wl~~~Id~L~~QiE~~E~E~E~L~~~~k 153 (233)
T PF04065_consen 75 -KLLENRKLIEEQMERFKVVEKESKTKAFSKEGLMAASKLDPKEKEKEEARDWLKDSIDELNRQIEQLEAEIESLSSQKK 153 (233)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhcccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999975332
Q ss_pred C-----CCchhHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhhhhhhhHHHHHHHhCCCCccccCCCcccccCCCCC
Q 002678 162 K-----TRPPRLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQDDFEEFSDVDELYHLLPLD 236 (893)
Q Consensus 162 K-----~~~~r~~~le~~ierhk~Hi~kLE~lLRlLdN~~l~pe~V~~IKddieyYve~nqddf~ef~dde~iYd~L~Ld 236 (893)
| ..++|+++|+.+|+||+|||.|||+|||+|+||.|+|++|++|||||+|||++|+++ ||++|++|||+|+||
T Consensus 154 Kkk~~~~~~~r~~~l~~~ierhk~Hi~kLE~lLR~L~N~~l~~e~V~~ikedieyYve~n~d~--Df~ede~iYddl~Ld 231 (233)
T PF04065_consen 154 KKKKDSTKQERIEELESRIERHKFHIEKLELLLRLLDNDELDPEQVEDIKEDIEYYVESNQDP--DFEEDEDIYDDLNLD 231 (233)
T ss_pred cCccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCCC--cccchHhHhhccCCC
Confidence 2 346899999999999999999999999999999999999999999999999999983 567799999999999
Q ss_pred Cc
Q 002678 237 KV 238 (893)
Q Consensus 237 e~ 238 (893)
++
T Consensus 232 ee 233 (233)
T PF04065_consen 232 EE 233 (233)
T ss_pred CC
Confidence 74
No 4
>PF04153 NOT2_3_5: NOT2 / NOT3 / NOT5 family; InterPro: IPR007282 NOT1, NOT2, NOT3, NOT4 and NOT5 form a nuclear complex that negatively regulates the basal and activated transcription of many genes. This family includes NOT2, NOT3 and NOT5.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=100.00 E-value=1.8e-36 Score=289.92 Aligned_cols=126 Identities=43% Similarity=0.882 Sum_probs=107.3
Q ss_pred HhhhCCCCCCCCccCCCCCCCCCCCCCCCC-------CCCCCC-CCChhhhhhcccCCCCCcceEEEeccCCChHHHHHH
Q 002678 748 AFYKLPQPKDSERARSYIPRHPAVTPPSYP-------QVQAPI-VSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLA 819 (893)
Q Consensus 748 ly~tF~sPwdsep~r~~~Pr~p~~~P~cY~-------q~ppP~-L~np~~f~K~Ki~kFs~ETLFYIFYs~PgD~~Ql~A 819 (893)
||.+|.+||++.+++...+ .+.+|.||. +.+++. ++++.+|++ |++||||||||+||||++|++|
T Consensus 1 L~~sf~sp~~~~~~~~~~~--~y~~P~~~~~~~~~~p~~p~~~~~~~~~~~~k-----~~~eTLFyiFY~~p~~~~Q~~A 73 (134)
T PF04153_consen 1 LYSSFASPPSDSDSRQQEP--QYQIPSCYLPTPSSYPQRPPPIILDSPEKFQK-----FSEETLFYIFYYMPGDYQQLLA 73 (134)
T ss_pred CccccCCCCCCCCCCCCCC--CCCCCCCcCcCccccCCCcCcccccchHHHhh-----cCCceEEEEEeecCCcHHHHHH
Confidence 6889999999987643211 233466655 444444 556666666 9999999999999999999999
Q ss_pred HHHHhhcccccccccceeeeccCCCcccCCCcceEEEEEEcCcCCccccccccccccccceEEeccchh
Q 002678 820 AKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLE 888 (893)
Q Consensus 820 A~EL~~RgWRYHKk~~~WftR~~eP~v~t~~~ErGtY~yFDp~~~~~~~~~~W~qk~K~eFtl~Y~~LE 888 (893)
|+||++|||||||++++||+|++++.++++.+|+|+|+|||++ +|+++.|+||+|+|++||
T Consensus 74 A~eL~~R~Wryhk~~~~W~~r~~~~~~~~~~~e~g~y~~FD~~--------~W~~~~k~~f~~~y~~LE 134 (134)
T PF04153_consen 74 AKELYKRGWRYHKEYKTWFQRDSEPKPITEQYERGSYVYFDPE--------SWEKRRKKNFTFDYSDLE 134 (134)
T ss_pred HHHHHHCCcEEecCcCEEeeECCCCCccccceeeeeEEEechH--------HhcCcchhccEEeHHHcC
Confidence 9999999999999999999999999999999999999999994 799888899999999998
No 5
>COG5601 CDC36 General negative regulator of transcription subunit [Transcription]
Probab=99.97 E-value=2e-33 Score=270.77 Aligned_cols=159 Identities=24% Similarity=0.470 Sum_probs=128.9
Q ss_pred cccCCCCc--cccCCCCcccccCCCcccccccccchHHHhhhCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCChhh
Q 002678 712 RRSVSDLG--AIGDSLSGATVSSGGMHDQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAF 789 (893)
Q Consensus 712 rmsdpDL~--AlG~DLTt~~~~lG~~~e~~LNLns~E~ly~tF~sPwdsep~r~~~Pr~p~~~P~cY~q~ppP~L~np~~ 789 (893)
+|.|..+. .||-||. +++ -.++---...+.+..+|.+||+..--++..| -+++|.||+..|+|+..+..
T Consensus 10 ~ied~e~s~~~lg~Dl~----s~~--~sl~~p~~~qDr~~~t~~sPwae~tkk~vqp--~f~lP~cy~n~p~pp~f~~~- 80 (172)
T COG5601 10 QIEDEEQSIHDLGKDLL----SEI--LSLVRPKKYQDRPSTTLYSPWAESTKKPVQP--MFMLPNCYPNAPNPPIFKVN- 80 (172)
T ss_pred HHHHhhhhHHHhchhHH----HHH--HhhcCcccccccccccccChhhhhccCcccc--hhcCccccCCCCCCCceecc-
Confidence 66776666 6788887 344 1111222445557788999999984444332 25699999999877655554
Q ss_pred hhhcccCCCCCcceEEEeccCCChHHHHHHHHHHhhcccccccccceeeeccC--CCcccCCCcceEEEEEEcCcCCccc
Q 002678 790 WERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHE--EPKVANDEFEQGTYVYFDFHIANDD 867 (893)
Q Consensus 790 f~K~Ki~kFs~ETLFYIFYs~PgD~~Ql~AA~EL~~RgWRYHKk~~~WftR~~--eP~v~t~~~ErGtY~yFDp~~~~~~ 867 (893)
.+.+||+.|++||||||||+||+|++|..|+.||.+|+|||||.+++|++.++ +|.+.++..|||+|++|||.
T Consensus 81 ~~~~k~~~f~dETLFyiFY~~P~dvlQe~ay~el~krnwrfhK~lk~wlT~~p~m~P~~~~~~~ergsyvfFDP~----- 155 (172)
T COG5601 81 IEDMKMDNFHDETLFYIFYSFPNDVLQEKAYDELLKRNWRFHKMLKCWLTFNPGMSPATADHVKERGSYVFFDPF----- 155 (172)
T ss_pred hHHHHHHhhccceeEEEEeeCCcHHHHHHHHHHHHHhchhhhhhheeeeccCCCCCccccccccccceEEEEcch-----
Confidence 56689999999999999999999999999999999999999999999999985 78888899999999999995
Q ss_pred cccccccccccceEEeccchh
Q 002678 868 LQHGWCQRIKTEFTFEYNYLE 888 (893)
Q Consensus 868 ~~~~W~qk~K~eFtl~Y~~LE 888 (893)
.|. |++.||.|+|+.++
T Consensus 156 ---~W~-k~~~dfll~y~av~ 172 (172)
T COG5601 156 ---SWS-KVSLDFLLDYKAVR 172 (172)
T ss_pred ---hHH-HHhHHHHHHHHhhC
Confidence 895 99999999999774
No 6
>KOG2151 consensus Predicted transcriptional regulator [Transcription; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=99.58 E-value=5.9e-16 Score=165.82 Aligned_cols=106 Identities=23% Similarity=0.341 Sum_probs=88.5
Q ss_pred CCCCccccc--cccCCC--Cc-cccCCCCcccccCCCcccccccccchHHHhhhCCCCCCCCccCCCCCCCCCCCCCCCC
Q 002678 703 PSGGLGVIG--RRSVSD--LG-AIGDSLSGATVSSGGMHDQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYP 777 (893)
Q Consensus 703 ~~GLLGvl~--rmsdpD--L~-AlG~DLTt~~~~lG~~~e~~LNLns~E~ly~tF~sPwdsep~r~~~Pr~p~~~P~cY~ 777 (893)
.||+.|++. |+.+.| +. .+|.||++ +| |+|+..+.++.+|.+||...|++.. ..+.+|.||+
T Consensus 202 ~fgm~gLL~~ir~~~~~g~~~l~lg~Dl~~----ll------lsla~~~di~~~F~~P~~~~P~~~~---~~~~lp~~y~ 268 (312)
T KOG2151|consen 202 QFGMKGLLTLIRGAQGEGQTTLPLGADLNS----LL------LSLAVPEDIIPTFQGPWGEVPTSQE---ASFNLPNCYL 268 (312)
T ss_pred hhhhhcchhhheecccCcceeeccCCChhh----hh------ccccccccccccccCCcccCCcccc---hhhhcchhhh
Confidence 478888888 555655 22 89999995 88 9999999999999999999999932 2456999999
Q ss_pred CCCCCCCCChhhhhhcccCCCCCcceEEEeccCCChHHHHHHHHHHhhccc
Q 002678 778 QVQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSW 828 (893)
Q Consensus 778 q~ppP~L~np~~f~K~Ki~kFs~ETLFYIFYs~PgD~~Ql~AA~EL~~RgW 828 (893)
.++++. .. .++..|++||||||||.+|+|.+|+.||.||.+|+|
T Consensus 269 ~v~~~~-~~------~~~~~~~dE~lff~fyt~~~d~~Q~~aa~el~~r~w 312 (312)
T KOG2151|consen 269 NVNPKL-QF------SKIDQFQDETLFYIFYTFPGDVMQELAAAELLKRNW 312 (312)
T ss_pred ccCCcc-ch------HHHhhhcccceeeeeccCCcchhhhhHHHHhhccCC
Confidence 854433 21 247779999999999999999999999999999999
No 7
>KOG2151 consensus Predicted transcriptional regulator [Transcription; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=99.35 E-value=5.9e-13 Score=143.05 Aligned_cols=133 Identities=28% Similarity=0.555 Sum_probs=109.3
Q ss_pred cccCCCCcccccCCCcccccccccc-hHHHhhhCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCChhhhhh---ccc
Q 002678 720 AIGDSLSGATVSSGGMHDQMYNMQM-LESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWER---LSL 795 (893)
Q Consensus 720 AlG~DLTt~~~~lG~~~e~~LNLns-~E~ly~tF~sPwdsep~r~~~Pr~p~~~P~cY~q~ppP~L~np~~f~K---~Ki 795 (893)
++|.||++ || +|+|. .-.+|.+|++||++++.+.- .+..+|.||..... .+.+ ..+
T Consensus 37 ~~~~d~~~----lg------~~~n~~~~~~~~~f~g~~~s~~l~~l---~~~~~P~~~~~~~~-------~~~~~~~~~~ 96 (312)
T KOG2151|consen 37 ALGYDLTT----LG------LNLNLSERKLLMNFAGPWASEPLRHL---LDTKVPEEYMTHRH-------LRSKLPSLRL 96 (312)
T ss_pred eeccchhc----cC------cccccccccccccccCcCCCcccccc---ccccCccccccchh-------hhhcCCcccc
Confidence 88999996 88 55553 33789999999999999843 34679999984322 2222 347
Q ss_pred CCCCCcceEEEeccCCChHHHHHHHHHHhhcccccccccceeeeccC--CCcccCCCcceEEEEEEcCcCCccccccccc
Q 002678 796 DSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHE--EPKVANDEFEQGTYVYFDFHIANDDLQHGWC 873 (893)
Q Consensus 796 ~kFs~ETLFYIFYs~PgD~~Ql~AA~EL~~RgWRYHKk~~~WftR~~--eP~v~t~~~ErGtY~yFDp~~~~~~~~~~W~ 873 (893)
+++...-|||+||++| |.||+.|.||||++.+.|+++.. .+...++.++.|.|..||. ..|+
T Consensus 97 ~kv~~~~l~~~~~~~P--------a~e~~~r~~~~~~~~~~~l~~s~yg~~~~~~~~~~~g~~~~~~q--------~s~~ 160 (312)
T KOG2151|consen 97 NKVGERVLFYLFYNLP--------AGELQAREWRFHKSEQVWLTRSQYGGVKELPGNYMKGHFNVFDQ--------MSWR 160 (312)
T ss_pred cccccccceeeeccCC--------CcccccccccccccccccccccccCCccccccchhhchhccccc--------hhhh
Confidence 7799999999999999 99999999999999999999974 5666777999999999999 4896
Q ss_pred cccccceEEeccchhh
Q 002678 874 QRIKTEFTFEYNYLED 889 (893)
Q Consensus 874 qk~K~eFtl~Y~~LE~ 889 (893)
.+.++--++|.++|+
T Consensus 161 -~~~ke~~l~~~~~~~ 175 (312)
T KOG2151|consen 161 -KIPKELKLAYSDLED 175 (312)
T ss_pred -hcccchhhccccccc
Confidence 788899999999886
No 8
>cd07674 F-BAR_FCHO1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 1 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FCH domain Only 1 (FCHO1) may be involved in clathrin-coated vesicle formation. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO2 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=95.91 E-value=0.08 Score=56.66 Aligned_cols=173 Identities=20% Similarity=0.264 Sum_probs=88.0
Q ss_pred HHHHHHHHhhcCCC--chhHHHHHHHHHHHHHHHHHhH-HHHHHhhcccc-cccc-c---cchhhHHHHHHHHHHHHHHH
Q 002678 24 VFDSIWNKVYDTDN--ANQKEKFEADLKKEIKKLQRYR-DQIKTWIQSSE-IKDK-K---VSASYEQALVDARKLIEREM 95 (893)
Q Consensus 24 ~Fd~i~eK~~~a~n--~nQKEKlE~DLKKEIKKLQR~R-DQIKtW~~s~e-IKDK-~---~~~~~~~~L~e~RKlIE~~M 95 (893)
.|..-|+.+....- ++.-..|-.-|..++|.+++++ +|+|.|-..-+ +-+. . ........|..+|+.-|.
T Consensus 57 tl~~~w~~~~~~~E~~a~~H~~l~~~L~~~~~~i~~~~~~~~k~~kk~~e~~~~~~~~~q~~q~~~~~l~kaK~~Y~~-- 134 (261)
T cd07674 57 TFAPMWEVFRVSSDKLALCHLELMRKLNDLIKDINRYGDEQVKIHKKTKEEAIGTLEAVQSLQVQSQHLQKSRENYHS-- 134 (261)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 47777777654321 2233444444555555566555 69999988522 1010 0 011123355556666665
Q ss_pred HHHHHHHhhhccccccccccCCCCCCCchHHhHHH-----HHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCchhHHH
Q 002678 96 ERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSE-----TRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTH 170 (893)
Q Consensus 96 ErFK~vEKesKtKafSkEGL~~~~k~DP~ekek~E-----~~~wL~~~IdeL~~QiE~~EaEiE~Ls~KK~K~~~~r~~~ 170 (893)
++|+.|+..+ .|+. +++.+|.. +.+=...+++.++.-...|+.++...=.+=-.-...||..
T Consensus 135 -~cke~e~a~~------~~~s------~k~leK~~~K~~ka~~~y~~~~~ky~~~~~~~~~~m~~~~~~~Q~~Ee~Ri~~ 201 (261)
T cd07674 135 -KCVEQERLRR------EGVP------QKELEKAELKTKKAAESLRGSVEKYNRARGDFEQKMLESAQKFQDIEETHLRH 201 (261)
T ss_pred -HHHHHHHHHh------cCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566542 2322 23222221 3333555666666555556554433210000112358888
Q ss_pred HHHHHHHHHHHHHH--------HHHHHHhhhCCCCChhhhhhhhhHHHHHHHhCCCC
Q 002678 171 LETSITRHKAHIMK--------LELILRLLDNDELSPEQVNDVKDLLEDYVERNQDD 219 (893)
Q Consensus 171 le~~ierhk~Hi~k--------LE~lLRlLdN~~l~pe~V~~IKddieyYve~nqdd 219 (893)
|...+-.+-.|+.. .|.|.+.|+ .| ++.+||..||+++...
T Consensus 202 lk~~L~~~~~~~~~~~~~~~~~~e~~~~~l~-------~i-d~~~Di~~fv~~~~tG 250 (261)
T cd07674 202 MKLLIKGYSHSVEDTHVQIGQVHEEFKQNVE-------NV-GVENLIRKFAESKGTG 250 (261)
T ss_pred HHHHHHHHHHHHHHccchHHHHHHHHHHHHH-------hC-CHHHHHHHHHHhCCCC
Confidence 88888777656432 333333332 22 2668899999988764
No 9
>PHA02562 46 endonuclease subunit; Provisional
Probab=95.51 E-value=0.67 Score=53.57 Aligned_cols=138 Identities=14% Similarity=0.283 Sum_probs=64.3
Q ss_pred cchhhhHHHHhhhHHH---hHHHHHHHHHHhhcCCCc------hhHHHHHHHHHHHHHHHHHhHHHHHHhhccccccccc
Q 002678 5 RKLQGEIDRVLKKVQE---GVDVFDSIWNKVYDTDNA------NQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKK 75 (893)
Q Consensus 5 RKLQ~EIDr~lKKV~E---Gve~Fd~i~eK~~~a~n~------nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~eIKDK~ 75 (893)
|+++++|+++..++.+ .++.|+...+.+...... ++.+++....+.-..++.+++++|..+-. ++.+-.
T Consensus 177 ~e~~~~i~~l~~~i~~l~~~i~~~~~~i~~~~~~~~~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~--~i~~~~ 254 (562)
T PHA02562 177 RELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVM--DIEDPS 254 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--ccccHH
Confidence 4556666665555444 555555444444332221 12222333333333334455555555442 222211
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCC--CCCCchHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002678 76 VSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQ--PKTDPKEKAKSETRDWLNNLVSELESQIDSFEAEL 153 (893)
Q Consensus 76 ~~~~~~~~L~e~RKlIE~~MErFK~vEKesKtKafSkEGL~~~--~k~DP~ekek~E~~~wL~~~IdeL~~QiE~~EaEi 153 (893)
..-+.|.+.+..++..++.++..-+-.| +.+-... ..++.. .....-|.+-|++|+.|++.++..+
T Consensus 255 ---~~L~~l~~~~~~~~~~l~~~~~~~~~~~-----~~~~Cp~C~~~~~~~----~~~~~~l~d~i~~l~~~l~~l~~~i 322 (562)
T PHA02562 255 ---AALNKLNTAAAKIKSKIEQFQKVIKMYE-----KGGVCPTCTQQISEG----PDRITKIKDKLKELQHSLEKLDTAI 322 (562)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHhc-----CCCCCCCCCCcCCCc----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1112456666677777777665444333 1111110 111111 3344456667777777777777777
Q ss_pred hhh
Q 002678 154 EGL 156 (893)
Q Consensus 154 E~L 156 (893)
..+
T Consensus 323 ~~~ 325 (562)
T PHA02562 323 DEL 325 (562)
T ss_pred HHH
Confidence 655
No 10
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=94.42 E-value=0.76 Score=49.60 Aligned_cols=136 Identities=28% Similarity=0.317 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHhHHH-HHHhhccc------cccccccchhhHHHHHHHHHHHHHHHHHHH-HHHhhhccccccccccCCC
Q 002678 47 DLKKEIKKLQRYRDQ-IKTWIQSS------EIKDKKVSASYEQALVDARKLIEREMERFK-ICEKETKTKAFSKEGLGQQ 118 (893)
Q Consensus 47 DLKKEIKKLQR~RDQ-IKtW~~s~------eIKDK~~~~~~~~~L~e~RKlIE~~MErFK-~vEKesKtKafSkEGL~~~ 118 (893)
-|+.||.-|.+..++ |+.+...- ++++- ...-+...|.+.|.--|..+.++| .+|...+.|- +.|..
T Consensus 128 ~L~eEl~fl~~~heeEi~~L~~~~~~~~~~e~~~~-~~~dL~~~L~eiR~~ye~~~~~~~~e~e~~y~~k~---~~l~~- 202 (312)
T PF00038_consen 128 SLKEELEFLKQNHEEEIEELREQIQSSVTVEVDQF-RSSDLSAALREIRAQYEEIAQKNREELEEWYQSKL---EELRQ- 202 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSTT-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH-
T ss_pred HHHHHHHHHHhhhhhhhhhhhhccccccceeeccc-ccccchhhhhhHHHHHHHHHhhhhhhhhhhccccc---ccccc-
Confidence 356666666665555 66666443 33321 134567789999999999888888 5666555552 11211
Q ss_pred CCCCchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCchhHHHHHHHH----HHHHHHHHHHHHHHHhhh
Q 002678 119 PKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSI----TRHKAHIMKLELILRLLD 193 (893)
Q Consensus 119 ~k~DP~ekek~E~~~wL~~~IdeL~~QiE~~EaEiE~Ls~KK~K~~~~r~~~le~~i----erhk~Hi~kLE~lLRlLd 193 (893)
......++..-+..-|.+++.++..++.++++|..++..- ..+|.+++... +.|.-+|..||.-|+-|.
T Consensus 203 -----~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~L-e~~l~~le~~~~~~~~~~~~~i~~le~el~~l~ 275 (312)
T PF00038_consen 203 -----QSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASL-ERQLRELEQRLDEEREEYQAEIAELEEELAELR 275 (312)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----cccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhh-hhhHHHHHHHHHHHHHHHHHhhhccchhHHHHH
Confidence 1222344566677778888888888888888885432110 12344443332 345556666665554443
No 11
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=94.39 E-value=0.64 Score=59.56 Aligned_cols=132 Identities=23% Similarity=0.312 Sum_probs=76.9
Q ss_pred chhHHHHHHHHHHHHHHHHHhHHHHHHhhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccCC
Q 002678 38 ANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQ 117 (893)
Q Consensus 38 ~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~eIKDK~~~~~~~~~L~e~RKlIE~~MErFK~vEKesKtKafSkEGL~~ 117 (893)
.++.+-+...++..-.++..-.++++.|+. ++++++++- +..|.++|+.|+.-.++-+.||..
T Consensus 731 d~~i~~i~~~i~~~~~~~~~~~~~le~~~~-~eL~~~GvD---~~~I~~l~~~i~~L~~~l~~ie~~------------- 793 (1201)
T PF12128_consen 731 DEQIEQIKQEIAAAKQEAKEQLKELEQQYN-QELAGKGVD---PERIQQLKQEIEQLEKELKRIEER------------- 793 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhCCCC---HHHHHHHHHHHHHHHHHHHHHHHh-------------
Confidence 445555666666666666677778888887 477766622 447777887777766665555532
Q ss_pred CCCCCchHHhHHHHHHHHHHH----------HHHHHHHHHHHHHHHhhhhcccC---CCCchhHHHHHHHHHHHHHHHHH
Q 002678 118 QPKTDPKEKAKSETRDWLNNL----------VSELESQIDSFEAELEGLTVKKG---KTRPPRLTHLETSITRHKAHIMK 184 (893)
Q Consensus 118 ~~k~DP~ekek~E~~~wL~~~----------IdeL~~QiE~~EaEiE~Ls~KK~---K~~~~r~~~le~~ierhk~Hi~k 184 (893)
..+-.+-.+|+... ..+|..|+..++.+++.+..+.. +.-..++.+++..+...+-++..
T Consensus 794 -------r~~V~eY~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~ 866 (1201)
T PF12128_consen 794 -------RAEVIEYEDWLQEEWDKVDELREEKPELEEQLRDLEQELQELEQELNQLQKEVKQRRKELEEELKALEEQLEQ 866 (1201)
T ss_pred -------HHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22334455666654 33455666666666655533211 11124555666666666666666
Q ss_pred HHHHHHhhh
Q 002678 185 LELILRLLD 193 (893)
Q Consensus 185 LE~lLRlLd 193 (893)
|+..++.|.
T Consensus 867 ~~~~l~~l~ 875 (1201)
T PF12128_consen 867 LEEQLRRLR 875 (1201)
T ss_pred HHHHHHHHH
Confidence 666665443
No 12
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=94.19 E-value=4.2 Score=45.19 Aligned_cols=46 Identities=17% Similarity=0.201 Sum_probs=35.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhhhhhhhHHHHHH
Q 002678 166 PRLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYV 213 (893)
Q Consensus 166 ~r~~~le~~ierhk~Hi~kLE~lLRlLdN~~l~pe~V~~IKddieyYv 213 (893)
.+++++...+..++--|..+|.++. .+...+..+|..||+.++..=
T Consensus 244 ~~i~~~~~~k~~l~~eI~e~~~~~~--~~r~~t~~Ev~~Lk~~~~~Le 289 (325)
T PF08317_consen 244 EKIEELEEQKQELLAEIAEAEKIRE--ECRGWTRSEVKRLKAKVDALE 289 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HhcCCCHHHHHHHHHHHHHHH
Confidence 4566677777777777777877766 566679999999999988653
No 13
>cd07673 F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 2 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. The specific function of FCH domain Only 2 (FCHO2) is still unknown. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO1 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=94.01 E-value=0.46 Score=51.46 Aligned_cols=172 Identities=18% Similarity=0.267 Sum_probs=82.0
Q ss_pred HHHHHHHhhcC-CC-chhHHHHHHHHHHHHHHHHHhH----HHHHHhhc--cccccccccchhhHHHHHHHHHHHHHHHH
Q 002678 25 FDSIWNKVYDT-DN-ANQKEKFEADLKKEIKKLQRYR----DQIKTWIQ--SSEIKDKKVSASYEQALVDARKLIEREME 96 (893)
Q Consensus 25 Fd~i~eK~~~a-~n-~nQKEKlE~DLKKEIKKLQR~R----DQIKtW~~--s~eIKDK~~~~~~~~~L~e~RKlIE~~ME 96 (893)
|...|+.+... +. +++...|-.-|+.+|+.|.+++ .+-|.|-. .+-+|--..-+...+.|..+|+.-|.
T Consensus 65 ~~~~~~~~~~e~e~~a~~H~~la~~L~~~~~~l~~~~~~~~k~rK~~ke~~~~~~~~~~~~~~~~~~~~KaK~~Y~~--- 141 (269)
T cd07673 65 FAPVWDVFKTSTEKLANCHLELVRKLQELIKEVQKYGEEQVKSHKKTKEEVAGTLEAVQNIQSITQALQKSKENYNA--- 141 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 66667776322 22 3445555555555555565555 34455522 11111111012233455556666554
Q ss_pred HHHHHHhhhccccccccccCCCCCCCchHHhHHH-----HHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCchhHHHH
Q 002678 97 RFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSE-----TRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHL 171 (893)
Q Consensus 97 rFK~vEKesKtKafSkEGL~~~~k~DP~ekek~E-----~~~wL~~~IdeL~~QiE~~EaEiE~Ls~KK~K~~~~r~~~l 171 (893)
+.++.||..| ++. .+++-+|.+ +.+=...+|+.|+.-...++.++...-.+=-.-..+||..+
T Consensus 142 ~c~e~e~~~~------~~~------t~k~leK~~~k~~ka~~~Y~~~v~~l~~~~~~~~~~m~~~~~~~Q~~Ee~Ri~~~ 209 (269)
T cd07673 142 KCLEQERLKK------EGA------TQREIEKAAVKSKKATESYKLYVEKYALAKADFEQKMTETAQKFQDIEETHLIRI 209 (269)
T ss_pred HHHHHHHHHh------cCC------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445565433 221 122322221 33334666666666655666655443111011123467777
Q ss_pred HHHHHHHHHHHHHH--------HHHHHhhhCCCCChhhhhhhhhHHHHHHHhCCCC
Q 002678 172 ETSITRHKAHIMKL--------ELILRLLDNDELSPEQVNDVKDLLEDYVERNQDD 219 (893)
Q Consensus 172 e~~ierhk~Hi~kL--------E~lLRlLdN~~l~pe~V~~IKddieyYve~nqdd 219 (893)
...|-.+-.|+..- |.|-+.|++ + ++..||..||+++...
T Consensus 210 k~~l~~y~~~~s~~~~~~~~~~e~ir~~le~-------~-d~~~Di~~fi~~~gTG 257 (269)
T cd07673 210 KEIIGSYSNSVKEIHIQIGQVHEEFINNMAN-------T-TVESLIQKFAESKGTG 257 (269)
T ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHHHh-------C-CHHHHHHHHHHhcCCC
Confidence 77665555444432 333332222 1 3568899999988763
No 14
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=93.62 E-value=2 Score=51.64 Aligned_cols=32 Identities=19% Similarity=0.264 Sum_probs=27.9
Q ss_pred chhHHHHHHHHHHHHHHHHHhHHHHHHhhccc
Q 002678 38 ANQKEKFEADLKKEIKKLQRYRDQIKTWIQSS 69 (893)
Q Consensus 38 ~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~ 69 (893)
..+|+.+|.+++..-+++.+.+++++.|+++.
T Consensus 261 ~~~r~~Le~ei~~le~e~~e~~~~l~~l~~~~ 292 (650)
T TIGR03185 261 FEEREQLERQLKEIEAARKANRAQLRELAADP 292 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 55688999999999999999999999999765
No 15
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=93.26 E-value=2.4 Score=54.09 Aligned_cols=146 Identities=25% Similarity=0.263 Sum_probs=90.7
Q ss_pred chhHHHHHHHHHHHHHHHHHhHHHHHHhhccc--cccccccchhhHHHHHHHHHHHHHHHHHHHHH-Hhhhccccccccc
Q 002678 38 ANQKEKFEADLKKEIKKLQRYRDQIKTWIQSS--EIKDKKVSASYEQALVDARKLIEREMERFKIC-EKETKTKAFSKEG 114 (893)
Q Consensus 38 ~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~--eIKDK~~~~~~~~~L~e~RKlIE~~MErFK~v-EKesKtKafSkEG 114 (893)
.++++|+++++|+++--++-+--||+.-=+.. .+-|++ .|.+.++.||.-=-.+-++ |+..| |+= .++
T Consensus 819 ~~~l~~~~~~~k~~~~~~~~l~~~i~~~E~~~~k~~~d~~-------~l~~~~~~ie~l~kE~e~~qe~~~K-k~~-i~~ 889 (1293)
T KOG0996|consen 819 ENRLEKLTASVKRLAELIEYLESQIAELEAAVLKKVVDKK-------RLKELEEQIEELKKEVEELQEKAAK-KAR-IKE 889 (1293)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcHH-------HHHHHHHHHHHHHHHHHHHHHhhhH-HHH-HHH
Confidence 56799999999999998888888888776552 222555 7777777777533333333 44333 221 011
Q ss_pred cCCCCCCCchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhC
Q 002678 115 LGQQPKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDN 194 (893)
Q Consensus 115 L~~~~k~DP~ekek~E~~~wL~~~IdeL~~QiE~~EaEiE~Ls~KK~K~~~~r~~~le~~ierhk~Hi~kLE~lLRlLdN 194 (893)
| +.++|- --.+-..--++-|+.++.|++.++++|.++..+.. +....++.++..+.+|..-|..+|.=+.-|.-
T Consensus 890 l--q~~i~~---i~~e~~q~qk~kv~~~~~~~~~l~~~i~k~~~~i~-~s~~~i~k~q~~l~~le~~~~~~e~e~~~L~e 963 (1293)
T KOG0996|consen 890 L--QNKIDE---IGGEKVQAQKDKVEKINEQLDKLEADIAKLTVAIK-TSDRNIAKAQKKLSELEREIEDTEKELDDLTE 963 (1293)
T ss_pred H--HHHHHH---hhchhhHHhHHHHHHHHHHHHHHHHHHHHhHHHHh-cCcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 111221 11122223357789999999999999998865433 33346777888888888888877775555544
Q ss_pred CCCC
Q 002678 195 DELS 198 (893)
Q Consensus 195 ~~l~ 198 (893)
+..+
T Consensus 964 ~~~~ 967 (1293)
T KOG0996|consen 964 ELKG 967 (1293)
T ss_pred HHhh
Confidence 4433
No 16
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=92.40 E-value=5.6 Score=46.23 Aligned_cols=97 Identities=27% Similarity=0.242 Sum_probs=69.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhcc--ccccccccCCCCCCCchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002678 80 YEQALVDARKLIEREMERFKICEKETKT--KAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLT 157 (893)
Q Consensus 80 ~~~~L~e~RKlIE~~MErFK~vEKesKt--KafSkEGL~~~~k~DP~ekek~E~~~wL~~~IdeL~~QiE~~EaEiE~Ls 157 (893)
.-+-|.+.++..++..+.|+.||+|.+. |--|..| -+-.+.|+..-+..-|-+|+.|+|..+.|++.+
T Consensus 263 ~~~~l~~K~~iL~ekv~~~qti~~e~~~~lk~i~~~~---------~e~d~~Et~~v~lke~~~Le~q~e~~~~e~~~l- 332 (446)
T KOG4438|consen 263 AMVELQEKAKILEEKVTNLQTIEKELKALLKKISSDG---------VEYDSLETKVVELKEILELEDQIELNQLELEKL- 332 (446)
T ss_pred HHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHhh---------hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 4456888999999999999999999762 2222222 233556777778889999999999999998776
Q ss_pred cccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhCCCC
Q 002678 158 VKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDEL 197 (893)
Q Consensus 158 ~KK~K~~~~r~~~le~~ierhk~Hi~kLE~lLRlLdN~~l 197 (893)
--.+.+..|...|+...|...+-++|...
T Consensus 333 -----------k~~e~~~kqL~~~~kek~~~~Qd~~~r~~ 361 (446)
T KOG4438|consen 333 -----------KMFENLTKQLNELKKEKESRRQDLENRKT 361 (446)
T ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 22455666677777666666666666554
No 17
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=92.38 E-value=3.1 Score=51.80 Aligned_cols=17 Identities=18% Similarity=0.522 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHhHHH
Q 002678 45 EADLKKEIKKLQRYRDQ 61 (893)
Q Consensus 45 E~DLKKEIKKLQR~RDQ 61 (893)
-.+|++++++|+|+++.
T Consensus 193 ~~~L~~q~~~l~~~~e~ 209 (1164)
T TIGR02169 193 IDEKRQQLERLRREREK 209 (1164)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 36788888888888883
No 18
>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7. The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.
Probab=92.29 E-value=0.57 Score=45.77 Aligned_cols=88 Identities=24% Similarity=0.391 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhc------ccCCCCc-----hhHHHHHHHHHHHHHHHHHHHHHH---------
Q 002678 130 ETRDWLNNLVSELESQIDSFEAELEGLTV------KKGKTRP-----PRLTHLETSITRHKAHIMKLELIL--------- 189 (893)
Q Consensus 130 E~~~wL~~~IdeL~~QiE~~EaEiE~Ls~------KK~K~~~-----~r~~~le~~ierhk~Hi~kLE~lL--------- 189 (893)
|+.-=|+.+++.|++++..+|.+++.+.. |+|++.. .++..++..+++......+||.++
T Consensus 1 eai~~Lk~~~~~L~~~~~~le~~i~~~~~~~k~~~~~~~~~~A~~~lk~~k~~~k~~~~~~~~~~~l~~~~~~ie~a~~~ 80 (171)
T PF03357_consen 1 EAILKLKKTIRRLEKQIKRLEKKIKKLEKKAKKAIKKGNKERAKIYLKRKKRLEKQLEKLLNQLSNLESVLLQIETAQSN 80 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556788999999999999999988842 3343221 234445555555555555555443
Q ss_pred --------------HhhhCCCCChhhhhhhhhHHHHHHHhCCC
Q 002678 190 --------------RLLDNDELSPEQVNDVKDLLEDYVERNQD 218 (893)
Q Consensus 190 --------------RlLdN~~l~pe~V~~IKddieyYve~nqd 218 (893)
+.+ |..|+.+.|+++.|+|+.-++..++
T Consensus 81 ~~v~~al~~~~~~Lk~~-~~~i~~~~v~~~~d~~~e~~e~~~e 122 (171)
T PF03357_consen 81 QQVVKALKQSSKALKKI-NKQINLDKVEKLMDDFQEEMEDQDE 122 (171)
T ss_dssp HHHSSS----SHHHHHH-HHSTTSCCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 333 5568999999999999999987654
No 19
>cd07648 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proteins in this group have been named FCH domain Only (FCHO) proteins. Vertebrates have two members, FCHO1 and FCHO2. These proteins contain an F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=91.81 E-value=1.3 Score=47.20 Aligned_cols=87 Identities=13% Similarity=0.178 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCC-hhhhhhhhhHH
Q 002678 131 TRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELS-PEQVNDVKDLL 209 (893)
Q Consensus 131 ~~~wL~~~IdeL~~QiE~~EaEiE~Ls~KK~K~~~~r~~~le~~ierhk~Hi~kLE~lLRlLdN~~l~-pe~V~~IKddi 209 (893)
+.+=....|+.++.--..++.++...-.+=-.-...||..+...+-.+--|+...=..+.-+-++-.. .+. -++..||
T Consensus 162 a~~~Y~~~v~~~~~~~~~~~~~m~~~~~~~Q~lEe~Ri~~~k~~l~~y~~~~~~~~~~~~~~~e~~~~~~~~-id~~~Di 240 (261)
T cd07648 162 AQDEYKALVEKYNNIRADFETKMTDSCKRFQEIEESHLRQMKEFLASYAEVLSENHSAVGQVHEEFKRQVDE-LTVDKLL 240 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHh-CCHHHHH
Confidence 33344555566655555555555332111011123577777777777766664422222111111111 111 1356789
Q ss_pred HHHHHhCCC
Q 002678 210 EDYVERNQD 218 (893)
Q Consensus 210 eyYve~nqd 218 (893)
..||+.+..
T Consensus 241 ~~fv~~~gt 249 (261)
T cd07648 241 RQFVESKGT 249 (261)
T ss_pred HHHHHcCCC
Confidence 999998876
No 20
>PRK04863 mukB cell division protein MukB; Provisional
Probab=91.61 E-value=13 Score=49.40 Aligned_cols=51 Identities=14% Similarity=0.137 Sum_probs=38.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhhhhhhhHHHHHHHhC
Q 002678 166 PRLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERN 216 (893)
Q Consensus 166 ~r~~~le~~ierhk~Hi~kLE~lLRlLdN~~l~pe~V~~IKddieyYve~n 216 (893)
..+..++..+..|+--+.+||.+=.++....|+.+++.+..+..+.-++..
T Consensus 404 qel~elQ~el~q~qq~i~~Le~~~~~~~~~~~SdEeLe~~LenF~aklee~ 454 (1486)
T PRK04863 404 QALDVQQTRAIQYQQAVQALERAKQLCGLPDLTADNAEDWLEEFQAKEQEA 454 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 456677777788888888888888888888888888777666666655543
No 21
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=91.52 E-value=2.3 Score=39.82 Aligned_cols=82 Identities=22% Similarity=0.329 Sum_probs=50.4
Q ss_pred HHHHHHHHhHHHHHHhhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhcc-----ccccccccCCCCCCCch
Q 002678 50 KEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKT-----KAFSKEGLGQQPKTDPK 124 (893)
Q Consensus 50 KEIKKLQR~RDQIKtW~~s~eIKDK~~~~~~~~~L~e~RKlIE~~MErFK~vEKesKt-----KafSkEGL~~~~k~DP~ 124 (893)
..|.++|++|+++. .|...|..||.+....+.+-+|.+. +-|-..|=.. -
T Consensus 3 ~~~~~~q~l~~~~~-------------------~l~~~~~~l~~~~~E~~~v~~EL~~l~~d~~vy~~VG~vf------v 57 (105)
T cd00632 3 EQLAQLQQLQQQLQ-------------------AYIVQRQKVEAQLNENKKALEELEKLADDAEVYKLVGNVL------V 57 (105)
T ss_pred HHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHcCCCcchHHHHhhhHH------h
Confidence 36788888988875 5666666666666666666555543 4555555433 2
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002678 125 EKAKSETRDWLNNLVSELESQIDSFEAELEGL 156 (893)
Q Consensus 125 ekek~E~~~wL~~~IdeL~~QiE~~EaEiE~L 156 (893)
+..+.++...|.+-++.|...|+.++..++.+
T Consensus 58 ~~~~~ea~~~Le~~~e~le~~i~~l~~~~~~l 89 (105)
T cd00632 58 KQEKEEARTELKERLETIELRIKRLERQEEDL 89 (105)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666666666555443
No 22
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=91.45 E-value=3.5 Score=50.68 Aligned_cols=157 Identities=15% Similarity=0.194 Sum_probs=72.6
Q ss_pred HhhhHHHhHHHHHHHH-HHhhcCCCchh-H-HHHHHHHHHHHHHHHHhHHHHHHhhccccccccccchhhHHHHHHHHHH
Q 002678 14 VLKKVQEGVDVFDSIW-NKVYDTDNANQ-K-EKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKL 90 (893)
Q Consensus 14 ~lKKV~EGve~Fd~i~-eK~~~a~n~nQ-K-EKlE~DLKKEIKKLQR~RDQIKtW~~s~eIKDK~~~~~~~~~L~e~RKl 90 (893)
||.=+.+.++.|-+-| +|++.+-..=| | .-|....++.+++|+.+++.++.-....+ +|.| +
T Consensus 537 ~l~lL~~a~~vlreeYi~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae------------~Lae---R 601 (717)
T PF10168_consen 537 CLELLSQATKVLREEYIEKQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAE------------KLAE---R 601 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHH---H
Confidence 5566667778887666 55554322222 1 12444455566677777776665432221 3433 2
Q ss_pred HHHHHHHHHHHHhhhccc---c-ccccccCCCCCCCchHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCC-
Q 002678 91 IEREMERFKICEKETKTK---A-FSKEGLGQQPKTDPKEKAKS-ETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTR- 164 (893)
Q Consensus 91 IE~~MErFK~vEKesKtK---a-fSkEGL~~~~k~DP~ekek~-E~~~wL~~~IdeL~~QiE~~EaEiE~Ls~KK~K~~- 164 (893)
||+..|+-+.+++.++.= . .-.-.|..+++.--+|-++. +..+-|...|++++.+++..+..+++ .++.+++
T Consensus 602 ~e~a~d~Qe~L~~R~~~vl~~l~~~~P~LS~AEr~~~~EL~~~~~~l~~l~~si~~lk~k~~~Q~~~i~~--~~~~~~~s 679 (717)
T PF10168_consen 602 YEEAKDKQEKLMKRVDRVLQLLNSQLPVLSEAEREFKKELERMKDQLQDLKASIEQLKKKLDYQQRQIES--QKSPKKKS 679 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cccccCCC
Confidence 444444444444433311 1 00111332221111111111 12334566666666666666665552 2222222
Q ss_pred ----chhHHHHHHHHHHHHHHHHHHHH
Q 002678 165 ----PPRLTHLETSITRHKAHIMKLEL 187 (893)
Q Consensus 165 ----~~r~~~le~~ierhk~Hi~kLE~ 187 (893)
......++..+..+--||+.|=.
T Consensus 680 ~~L~~~Q~~~I~~iL~~~~~~I~~~v~ 706 (717)
T PF10168_consen 680 IVLSESQKRTIKEILKQQGEEIDELVK 706 (717)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23455566666666666665543
No 23
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=91.42 E-value=1.5 Score=56.10 Aligned_cols=12 Identities=42% Similarity=0.792 Sum_probs=5.4
Q ss_pred ccCCCcccccCC
Q 002678 222 EFSDVDELYHLL 233 (893)
Q Consensus 222 ef~dde~iYd~L 233 (893)
+|++...-|+.|
T Consensus 971 e~e~~~~r~~~l 982 (1163)
T COG1196 971 EYEEVEERYEEL 982 (1163)
T ss_pred HHHHHHHHHHHH
Confidence 344444444444
No 24
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=91.27 E-value=14 Score=44.10 Aligned_cols=35 Identities=20% Similarity=0.259 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHhhhCCCCChhhhh----hhhhHHHHHHH
Q 002678 180 AHIMKLELILRLLDNDELSPEQVN----DVKDLLEDYVE 214 (893)
Q Consensus 180 ~Hi~kLE~lLRlLdN~~l~pe~V~----~IKddieyYve 214 (893)
-.-.+++.|.+.|+.|.|+.+.|+ ++.++++++.+
T Consensus 452 ~~~~~i~~l~~~L~~g~VNm~ai~~e~~e~~~~~~~L~~ 490 (569)
T PRK04778 452 EVSDEIEALAEELEEKPINMEAVNRLLEEATEDVETLEE 490 (569)
T ss_pred HHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 334566777888888999988777 46666666554
No 25
>KOG2911 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.03 E-value=0.47 Score=54.72 Aligned_cols=86 Identities=29% Similarity=0.372 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh------cccCCCCc-----hhHHHHHHHHHHHHHHHHHHHHHHHhhhCC----
Q 002678 131 TRDWLNNLVSELESQIDSFEAELEGLT------VKKGKTRP-----PRLTHLETSITRHKAHIMKLELILRLLDND---- 195 (893)
Q Consensus 131 ~~~wL~~~IdeL~~QiE~~EaEiE~Ls------~KK~K~~~-----~r~~~le~~ierhk~Hi~kLE~lLRlLdN~---- 195 (893)
...=|...+..|.+|||.+|.|+|+.. .|+|+|+- .+..-+++.++|.---..+||.||--+++-
T Consensus 234 ~V~~L~~~~~~L~kqie~L~qeie~~~~~~r~~~k~g~K~iA~~ylr~rk~~eK~~er~~~~l~~l~~vl~~Id~s~~nk 313 (439)
T KOG2911|consen 234 SVADLIQARAKLAKQIEFLEQEIEKSKEKLRQALKEGKKQIAITYLRARKLLEKDLERKVSSLNNLETVLSQIDNSQTNK 313 (439)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcccH
Confidence 445677889999999999999999873 36666542 133446667788777788899988777653
Q ss_pred -------------------CCChhhhhhhhhHHHHHHHhC
Q 002678 196 -------------------ELSPEQVNDVKDLLEDYVERN 216 (893)
Q Consensus 196 -------------------~l~pe~V~~IKddieyYve~n 216 (893)
.+.+|.|+++-|+|..-++..
T Consensus 314 vvl~AyksGs~alK~il~~~~s~ekVed~Ldev~et~d~~ 353 (439)
T KOG2911|consen 314 VVLQAYKSGSEALKAILAQGGSTEKVEDVLDEVNETLDRQ 353 (439)
T ss_pred HHHHHHHHhHHHHHHHHhccCChhhHHHHHHHHHHHHhhH
Confidence 356677777666666655543
No 26
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=90.90 E-value=3 Score=50.20 Aligned_cols=31 Identities=23% Similarity=0.408 Sum_probs=28.7
Q ss_pred hhhhHHHHhhhHHHhHHHHHHHHHHhhcCCC
Q 002678 7 LQGEIDRVLKKVQEGVDVFDSIWNKVYDTDN 37 (893)
Q Consensus 7 LQ~EIDr~lKKV~EGve~Fd~i~eK~~~a~n 37 (893)
-|.|||-+.|+-.+|...|=.||+++.++..
T Consensus 71 yQ~EiD~LtkRsk~aE~afl~vye~L~eaPD 101 (629)
T KOG0963|consen 71 YQSEIDNLTKRSKFAEAAFLDVYEKLIEAPD 101 (629)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHhhCCC
Confidence 3889999999999999999999999998765
No 27
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=90.75 E-value=4.5 Score=51.41 Aligned_cols=64 Identities=20% Similarity=0.279 Sum_probs=44.4
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc--cCCC----CchhHHHHHHHHHHHHHHHHHHHH
Q 002678 124 KEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVK--KGKT----RPPRLTHLETSITRHKAHIMKLEL 187 (893)
Q Consensus 124 ~ekek~E~~~wL~~~IdeL~~QiE~~EaEiE~Ls~K--K~K~----~~~r~~~le~~ierhk~Hi~kLE~ 187 (893)
+-.+.+.-..||+.-|+.|+.|+..|..|++.+..+ .... -..++.+|...|+...||+..|..
T Consensus 395 ~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~lk~ 464 (1074)
T KOG0250|consen 395 ELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENISEELKDLKK 464 (1074)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344556677899999999999999999998888432 1111 124567777777777788776643
No 28
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=90.11 E-value=6 Score=50.89 Aligned_cols=30 Identities=23% Similarity=0.246 Sum_probs=20.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhCCC
Q 002678 167 RLTHLETSITRHKAHIMKLELILRLLDNDE 196 (893)
Q Consensus 167 r~~~le~~ierhk~Hi~kLE~lLRlLdN~~ 196 (893)
++..++..+.+++.+...|+.-|+.|....
T Consensus 871 ~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~ 900 (1163)
T COG1196 871 EKEELEDELKELEEEKEELEEELRELESEL 900 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777777777777777766544
No 29
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=89.92 E-value=6.5 Score=50.43 Aligned_cols=164 Identities=18% Similarity=0.244 Sum_probs=84.8
Q ss_pred chhhhHHHHhhhHHHhHHHHHHHHHHhhcCCC--chhHHHHHHHHHHHHHHHHHhHHHHHHhhccccccccc-cchhhHH
Q 002678 6 KLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDN--ANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKK-VSASYEQ 82 (893)
Q Consensus 6 KLQ~EIDr~lKKV~EGve~Fd~i~eK~~~a~n--~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~eIKDK~-~~~~~~~ 82 (893)
|+|.||+.|.+...-.-...|++.+++..-+. .+-++|+|..|-...+++++.|-.+.-- .+|.++-. -....-.
T Consensus 444 ~~~~ei~~L~~~~~~~~~~l~e~~~~l~~~t~~~~~e~~~~ekel~~~~~~~n~~~~e~~va--esel~~L~~~~~~~~~ 521 (1293)
T KOG0996|consen 444 KCQTEIEQLEELLEKEERELDEILDSLKQETEGIREEIEKLEKELMPLLKQVNEARSELDVA--ESELDILLSRHETGLK 521 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 45556666555555555555666655543332 3345666666666666666666554322 22222111 0000001
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCCCchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc---
Q 002678 83 ALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVK--- 159 (893)
Q Consensus 83 ~L~e~RKlIE~~MErFK~vEKesKtKafSkEGL~~~~k~DP~ekek~E~~~wL~~~IdeL~~QiE~~EaEiE~Ls~K--- 159 (893)
++.+..+.++..|+. .++.+.++. =+...|..++..+...+.+++.+...
T Consensus 522 ~~e~lk~~L~~~~~~--------------------------~~e~~~~l~-~~k~~l~~~k~e~~~~~k~l~~~~~e~~~ 574 (1293)
T KOG0996|consen 522 KVEELKGKLLASSES--------------------------LKEKKTELD-DLKEELPSLKQELKEKEKELPKLRKEERN 574 (1293)
T ss_pred HHHHHHHHHHHHHHH--------------------------HHHHHHHHH-HHHHhhhhHHHHHHHHHHhHHHHHHHHHH
Confidence 122222222222222 122333333 34456677777777778887776321
Q ss_pred -cCC--CCchhHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCC
Q 002678 160 -KGK--TRPPRLTHLETSITRHKAHIMKLELILRLLDNDELS 198 (893)
Q Consensus 160 -K~K--~~~~r~~~le~~ierhk~Hi~kLE~lLRlLdN~~l~ 198 (893)
+.. +.-+|++++...+...+.-=.-|..|+|+=++|.|.
T Consensus 575 ~~~~~~~~rqrveE~ks~~~~~~s~~kVl~al~r~kesG~i~ 616 (1293)
T KOG0996|consen 575 LKSQLNKLRQRVEEAKSSLSSSRSRNKVLDALMRLKESGRIP 616 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcCCCC
Confidence 111 113578888887777777777789999988887663
No 30
>PHA02562 46 endonuclease subunit; Provisional
Probab=89.37 E-value=20 Score=41.66 Aligned_cols=23 Identities=17% Similarity=0.242 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhc
Q 002678 136 NNLVSELESQIDSFEAELEGLTV 158 (893)
Q Consensus 136 ~~~IdeL~~QiE~~EaEiE~Ls~ 158 (893)
.+.|+++..+...+++++++|..
T Consensus 350 ~~~i~~~~~~~~~l~~ei~~l~~ 372 (562)
T PHA02562 350 KQSLITLVDKAKKVKAAIEELQA 372 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455566666777777777743
No 31
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=89.17 E-value=14 Score=41.10 Aligned_cols=103 Identities=21% Similarity=0.301 Sum_probs=62.5
Q ss_pred HHHhhhHHHhHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhHHHHHHhhccccccccccchhhHHHHHHHHHHH
Q 002678 12 DRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLI 91 (893)
Q Consensus 12 Dr~lKKV~EGve~Fd~i~eK~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~eIKDK~~~~~~~~~L~e~RKlI 91 (893)
+.-.+.+.+.++..+.++.++ .+.-+.|++||..|+..-+. -+.-|+. .|...|..|
T Consensus 162 ~~D~~~L~~~~~~l~~~~~~l---------~~~~~~L~~e~~~Lk~~~~e-------~~~~D~~-------eL~~lr~eL 218 (325)
T PF08317_consen 162 QEDYAKLDKQLEQLDELLPKL---------RERKAELEEELENLKQLVEE-------IESCDQE-------ELEALRQEL 218 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHhh-------hhhcCHH-------HHHHHHHHH
Confidence 334455555556666666555 23445677777777665444 2344555 777777777
Q ss_pred HHHHHHHHHHHhhhccccccccccCCCCCCCchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002678 92 EREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLT 157 (893)
Q Consensus 92 E~~MErFK~vEKesKtKafSkEGL~~~~k~DP~ekek~E~~~wL~~~IdeL~~QiE~~EaEiE~Ls 157 (893)
...++......++ -.+..+-...+...|++++.++..++++|+.+.
T Consensus 219 ~~~~~~i~~~k~~--------------------l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~ 264 (325)
T PF08317_consen 219 AEQKEEIEAKKKE--------------------LAELQEELEELEEKIEELEEQKQELLAEIAEAE 264 (325)
T ss_pred HHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7766653322211 223344556777788888888888888887774
No 32
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=89.13 E-value=6.3 Score=37.38 Aligned_cols=84 Identities=15% Similarity=0.265 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHhHHHHHHhhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhcc-----ccccccccCCCCCC
Q 002678 47 DLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKT-----KAFSKEGLGQQPKT 121 (893)
Q Consensus 47 DLKKEIKKLQR~RDQIKtW~~s~eIKDK~~~~~~~~~L~e~RKlIE~~MErFK~vEKesKt-----KafSkEGL~~~~k~ 121 (893)
.|...|.++|++|.+|+ .|...|..+|.++...+.+.++.+. +-|--.|=+.
T Consensus 4 ~~q~~~~~~q~~q~~~~-------------------~l~~q~~~le~~~~E~~~v~~eL~~l~~d~~vyk~VG~vl---- 60 (110)
T TIGR02338 4 QVQNQLAQLQQLQQQLQ-------------------AVATQKQQVEAQLKEAEKALEELERLPDDTPVYKSVGNLL---- 60 (110)
T ss_pred HHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhchhh----
Confidence 46678999999999986 5667777777777777777766543 3333333222
Q ss_pred CchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002678 122 DPKEKAKSETRDWLNNLVSELESQIDSFEAELEG 155 (893)
Q Consensus 122 DP~ekek~E~~~wL~~~IdeL~~QiE~~EaEiE~ 155 (893)
-++.+.++..-|++-|+.|+..|+.++..++.
T Consensus 61 --v~~~~~e~~~~l~~r~e~ie~~i~~lek~~~~ 92 (110)
T TIGR02338 61 --VKTDKEEAIQELKEKKETLELRVKTLQRQEER 92 (110)
T ss_pred --heecHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 13445555555555555554444444444433
No 33
>PHA00425 DNA packaging protein, small subunit
Probab=88.98 E-value=1.1 Score=41.51 Aligned_cols=67 Identities=21% Similarity=0.306 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHhhhhcccC----CCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhhhhhhhHHHHHHHhCC
Q 002678 142 LESQIDSFEAELEGLTVKKG----KTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQ 217 (893)
Q Consensus 142 L~~QiE~~EaEiE~Ls~KK~----K~~~~r~~~le~~ierhk~Hi~kLE~lLRlLdN~~l~pe~V~~IKddieyYve~nq 217 (893)
|.+=+|.+..|+.++-..-- |..+.=-..|.+.++||||||.||- .|..-+-++-+-++.|-+--.
T Consensus 6 L~k~LemlDTE~a~~mL~DL~ddekRtPQLYnAIgKlL~RHkF~isKl~----------pD~~iLg~la~~l~ey~~~~g 75 (88)
T PHA00425 6 LIKFLEMLDTEMAQRMLADLKDDEKRTPQLYNAIGKLLDRHKFQISKLQ----------PDENILGGLAAALEEYKEKVG 75 (88)
T ss_pred HHHHHHHHhHHHHHHHHHHhcCccccChHHHHHHHHHHHHhcccccccC----------CcHHHHHHHHHHHHHHHHhcC
Confidence 44456677777766532211 2334445678889999999999982 344445577788888887555
Q ss_pred C
Q 002678 218 D 218 (893)
Q Consensus 218 d 218 (893)
.
T Consensus 76 ~ 76 (88)
T PHA00425 76 A 76 (88)
T ss_pred C
Confidence 4
No 34
>PF07139 DUF1387: Protein of unknown function (DUF1387); InterPro: IPR009816 This family represents a conserved region approximately 300 residues long within a number of hypothetical proteins of unknown function that seem to be restricted to mammals.
Probab=88.88 E-value=5.6 Score=44.50 Aligned_cols=112 Identities=22% Similarity=0.333 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCC
Q 002678 41 KEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPK 120 (893)
Q Consensus 41 KEKlE~DLKKEIKKLQR~RDQIKtW~~s~eIKDK~~~~~~~~~L~e~RKlIE~~MErFK~vEKesKtKafSkEGL~~~~k 120 (893)
.-|+..-|.|-+|.|||+= -.|..||-+|+++|+- =.|.+
T Consensus 148 ~KKlg~nIEKSvKDLqRct----------------------vSL~RYr~~lkee~d~---S~k~i--------------- 187 (302)
T PF07139_consen 148 NKKLGPNIEKSVKDLQRCT----------------------VSLTRYRVVLKEEMDS---SIKKI--------------- 187 (302)
T ss_pred ccccCccHHHHHHHHHHHH----------------------HHHHhhhhHHHHHHHH---HHHHH---------------
Confidence 4577788999999999983 1799999999999986 11111
Q ss_pred CCchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhC-CCCCh
Q 002678 121 TDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDN-DELSP 199 (893)
Q Consensus 121 ~DP~ekek~E~~~wL~~~IdeL~~QiE~~EaEiE~Ls~KK~K~~~~r~~~le~~ierhk~Hi~kLE~lLRlLdN-~~l~p 199 (893)
..+.+=|..||- ..--.|=+|+++. -++.++-...+..+-|.|-|+-+- ..+..
T Consensus 188 --------k~~F~~l~~cL~---dREvaLl~EmdkV--------------K~EAmeiL~aRqkkAeeLkrltd~A~~MsE 242 (302)
T PF07139_consen 188 --------KQTFAELQSCLM---DREVALLAEMDKV--------------KAEAMEILDARQKKAEELKRLTDRASQMSE 242 (302)
T ss_pred --------HHHHHHHHHHHH---HHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHhhcCH
Confidence 112222333332 1222334444443 123444455556666666666653 34789
Q ss_pred hhhhhhhhHHHHHHHhCC
Q 002678 200 EQVNDVKDLLEDYVERNQ 217 (893)
Q Consensus 200 e~V~~IKddieyYve~nq 217 (893)
++|-+|+-||.+||-.-.
T Consensus 243 ~Ql~ELRadIK~fvs~rk 260 (302)
T PF07139_consen 243 EQLAELRADIKHFVSERK 260 (302)
T ss_pred HHHHHHHHHHHHHhhhhh
Confidence 999999999999997443
No 35
>PRK02224 chromosome segregation protein; Provisional
Probab=88.78 E-value=23 Score=43.87 Aligned_cols=26 Identities=8% Similarity=-0.022 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002678 168 LTHLETSITRHKAHIMKLELILRLLD 193 (893)
Q Consensus 168 ~~~le~~ierhk~Hi~kLE~lLRlLd 193 (893)
++++...+..++..+..++..|+.+.
T Consensus 421 ~~~l~~~~~~~~~~~~~~~~~l~~~~ 446 (880)
T PRK02224 421 RDELREREAELEATLRTARERVEEAE 446 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445555555555555554
No 36
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=88.53 E-value=7.3 Score=41.36 Aligned_cols=48 Identities=10% Similarity=0.145 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhhhCCCCChhhhhhhhhHHHHHHHhCCCCccccCCCcccccCC
Q 002678 181 HIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQDDFEEFSDVDELYHLL 233 (893)
Q Consensus 181 Hi~kLE~lLRlLdN~~l~pe~V~~IKddieyYve~nqddf~ef~dde~iYd~L 233 (893)
+...+..++..+ ..++-+.|.-+|+.|--|-..--. -+..||..|+++
T Consensus 190 ~~~~~~~~~~~~--Q~lEe~Ri~~lk~~l~~y~n~is~---~cv~~d~~~e~~ 237 (239)
T cd07647 190 WESEHATACQVF--QNMEEERIKFLRNALWVHCNLGSM---QCVKLDEMYEDV 237 (239)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhHHHH---HHccchHHHHHh
Confidence 334444455544 557788888899988888643322 233456666543
No 37
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=88.52 E-value=13 Score=39.07 Aligned_cols=45 Identities=24% Similarity=0.451 Sum_probs=34.6
Q ss_pred hhhhHHHHhhhHHHhHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHH
Q 002678 7 LQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQR 57 (893)
Q Consensus 7 LQ~EIDr~lKKV~EGve~Fd~i~eK~~~a~n~nQKEKlE~DLKKEIKKLQR 57 (893)
|.--+|.++|++..|+..++++.+=+ ..|-++|.+-=|.++||-+
T Consensus 3 L~d~~~~l~~~~~~g~~~~~~l~~f~------keRa~iE~eYak~L~kLa~ 47 (251)
T cd07653 3 LWDQFDNLEKHTQKGIDFLERYGKFV------KERAAIEQEYAKKLRKLVK 47 (251)
T ss_pred chhhhHHHHHHHHHhHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHH
Confidence 44568899999999999999987766 3467777777777777643
No 38
>PRK03918 chromosome segregation protein; Provisional
Probab=88.39 E-value=17 Score=44.72 Aligned_cols=32 Identities=13% Similarity=0.202 Sum_probs=22.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002678 126 KAKSETRDWLNNLVSELESQIDSFEAELEGLT 157 (893)
Q Consensus 126 kek~E~~~wL~~~IdeL~~QiE~~EaEiE~Ls 157 (893)
..+.+..+-+..-|.+|+.++..++.+++.+.
T Consensus 448 ~~~~el~~~~~~ei~~l~~~~~~l~~~~~~l~ 479 (880)
T PRK03918 448 EHRKELLEEYTAELKRIEKELKEIEEKERKLR 479 (880)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666777777777777777777776664
No 39
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=87.71 E-value=4.6 Score=48.38 Aligned_cols=65 Identities=18% Similarity=0.236 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCCCchHHhHHHHHHHHHHHHHHHHHHHHH
Q 002678 82 QALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDS 148 (893)
Q Consensus 82 ~~L~e~RKlIE~~MErFK~vEKesKtKafSkEGL~~~~k~DP~ekek~E~~~wL~~~IdeL~~QiE~ 148 (893)
..|-+-++.++...-+|++....||-|-=.=+|... ++--.-++|.+-++=|+..+++|+.|||.
T Consensus 262 eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~--~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~ 326 (581)
T KOG0995|consen 262 ESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLE--MLKSEIEEKEEEIEKLQKENDELKKQIEL 326 (581)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356666666888999999999999988777777654 12233467788889999999999988653
No 40
>PTZ00464 SNF-7-like protein; Provisional
Probab=87.69 E-value=2.3 Score=45.12 Aligned_cols=90 Identities=14% Similarity=0.274 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh--cccCCC------Cc------hhHHHHHHHHHHHHHHHHHHHHHHHhhh-
Q 002678 129 SETRDWLNNLVSELESQIDSFEAELEGLT--VKKGKT------RP------PRLTHLETSITRHKAHIMKLELILRLLD- 193 (893)
Q Consensus 129 ~E~~~wL~~~IdeL~~QiE~~EaEiE~Ls--~KK~K~------~~------~r~~~le~~ierhk~Hi~kLE~lLRlLd- 193 (893)
.++..=|.+-++.|.++|+.++.|++... .|++|+ +. .|+--++..+++..-++.+||.++-.|+
T Consensus 17 ~d~~~~l~~r~~~l~kKi~~ld~E~~~ak~~~k~~~~~~~~~~K~~Al~~LK~KK~~E~ql~~l~~q~~nleq~~~~ie~ 96 (211)
T PTZ00464 17 EDASKRIGGRSEVVDARINKIDAELMKLKEQIQRTRGMTQSRHKQRAMQLLQQKRMYQNQQDMMMQQQFNMDQLQFTTES 96 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55567788999999999999999887773 222221 10 0222233333333333444443332221
Q ss_pred ---------------------CCCCChhhhhhhhhHHHHHHHhCCC
Q 002678 194 ---------------------NDELSPEQVNDVKDLLEDYVERNQD 218 (893)
Q Consensus 194 ---------------------N~~l~pe~V~~IKddieyYve~nqd 218 (893)
|..++.|+|++|.|+|+..++-..+
T Consensus 97 a~~~~~vv~amk~g~kaLK~~~k~i~id~Vd~l~Dei~E~~e~~~E 142 (211)
T PTZ00464 97 VKDTKVQVDAMKQAAKTLKKQFKKLNVDKVEDLQDELADLYEDTQE 142 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 4568999999999999999985544
No 41
>PRK02224 chromosome segregation protein; Provisional
Probab=87.54 E-value=13 Score=46.00 Aligned_cols=16 Identities=25% Similarity=0.260 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHhh
Q 002678 89 KLIEREMERFKICEKE 104 (893)
Q Consensus 89 KlIE~~MErFK~vEKe 104 (893)
..||..-+++..++++
T Consensus 530 e~le~~~~~~~~l~~e 545 (880)
T PRK02224 530 ETIEEKRERAEELRER 545 (880)
T ss_pred HHHHhHHHHHHHHHHH
Confidence 3344444444444444
No 42
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=87.21 E-value=5.9 Score=53.37 Aligned_cols=47 Identities=23% Similarity=0.363 Sum_probs=40.5
Q ss_pred cccchhhhHHHHhhhHHHhHHHHHHHHHHhhcCCCchh--HHHHHHHHH
Q 002678 3 ASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQ--KEKFEADLK 49 (893)
Q Consensus 3 a~RKLQ~EIDr~lKKV~EGve~Fd~i~eK~~~a~n~nQ--KEKlE~DLK 49 (893)
+.|+|+.|.+.+.+++.|-.+.++.++.++..+...-+ |-|+|.++.
T Consensus 1323 ~l~~l~~e~~~l~e~leee~e~~~~l~r~lsk~~~e~~~~~~k~e~~~~ 1371 (1930)
T KOG0161|consen 1323 ALRQLEHELDLLREQLEEEQEAKNELERKLSKANAELAQWKKKFEEEVL 1371 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999987776554 778887665
No 43
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=87.02 E-value=1.9 Score=39.57 Aligned_cols=67 Identities=21% Similarity=0.324 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHhhhhcccC----CCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhhhhhhhHHHHHHHhCC
Q 002678 142 LESQIDSFEAELEGLTVKKG----KTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQ 217 (893)
Q Consensus 142 L~~QiE~~EaEiE~Ls~KK~----K~~~~r~~~le~~ierhk~Hi~kLE~lLRlLdN~~l~pe~V~~IKddieyYve~nq 217 (893)
|..=+|.+..|+...-..-- |..+.=-..+.++++||||||.|| ..|.+.+-++.+-++.|-+.-.
T Consensus 4 L~klLemlDtEmA~~mL~DLr~dekRsPQLYnAI~k~L~RHkF~iskl----------~pd~~~LG~L~~aL~ey~~~~g 73 (82)
T PF11123_consen 4 LEKLLEMLDTEMAQQMLADLRDDEKRSPQLYNAIGKLLDRHKFQISKL----------QPDENILGELAAALEEYKKMVG 73 (82)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchhhcChHHHHHHHHHHHHccchhhhc----------CccHHHHHHHHHHHHHHHHHcC
Confidence 34445666666655432211 233444567888999999999998 3456667789999999988655
Q ss_pred C
Q 002678 218 D 218 (893)
Q Consensus 218 d 218 (893)
.
T Consensus 74 ~ 74 (82)
T PF11123_consen 74 A 74 (82)
T ss_pred C
Confidence 4
No 44
>PRK09343 prefoldin subunit beta; Provisional
Probab=87.02 E-value=11 Score=36.61 Aligned_cols=44 Identities=16% Similarity=0.382 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 002678 44 FEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETK 106 (893)
Q Consensus 44 lE~DLKKEIKKLQR~RDQIKtW~~s~eIKDK~~~~~~~~~L~e~RKlIE~~MErFK~vEKesK 106 (893)
+-..|-.+|.+||.++++|+ .+...|..+|.++-..+.+-+|.+
T Consensus 5 ~~~~~q~~~~~~q~lq~~l~-------------------~~~~q~~~le~q~~e~~~~~~EL~ 48 (121)
T PRK09343 5 IPPEVQAQLAQLQQLQQQLE-------------------RLLQQKSQIDLELREINKALEELE 48 (121)
T ss_pred hhHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677889999999999987 566667777777766666665544
No 45
>PRK11637 AmiB activator; Provisional
Probab=86.98 E-value=21 Score=40.98 Aligned_cols=18 Identities=11% Similarity=0.202 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 002678 82 QALVDARKLIEREMERFK 99 (893)
Q Consensus 82 ~~L~e~RKlIE~~MErFK 99 (893)
..|.+.++.+..+|....
T Consensus 117 ~~l~~~~~~l~~rlra~Y 134 (428)
T PRK11637 117 QQQAAQERLLAAQLDAAF 134 (428)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 356666666665554443
No 46
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=86.96 E-value=13 Score=43.30 Aligned_cols=126 Identities=20% Similarity=0.240 Sum_probs=69.7
Q ss_pred chhhhHHHHhhhHHHhHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhHHHHHHhhccccccccccchhhHHHHH
Q 002678 6 KLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALV 85 (893)
Q Consensus 6 KLQ~EIDr~lKKV~EGve~Fd~i~eK~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~eIKDK~~~~~~~~~L~ 85 (893)
..|+||.++-++|.+--+ ++.|||.+||+-=+.+-+++.||+.-....+-.+|. +-
T Consensus 42 q~q~ei~~~~~~i~~~~~----------------~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~--------I~ 97 (420)
T COG4942 42 QIQKEIAALEKKIREQQD----------------QRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQ--------IA 97 (420)
T ss_pred HHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhh--------HH
Confidence 456666666666655333 355777777666666666777777655544333333 22
Q ss_pred HHHHHHH---H-HHHHHHHHHhhhccccccccccCCC--CCCCchH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002678 86 DARKLIE---R-EMERFKICEKETKTKAFSKEGLGQQ--PKTDPKE-KAKSETRDWLNNLVSELESQIDSFEAELEGLT 157 (893)
Q Consensus 86 e~RKlIE---~-~MErFK~vEKesKtKafSkEGL~~~--~k~DP~e-kek~E~~~wL~~~IdeL~~QiE~~EaEiE~Ls 157 (893)
+..+.|+ . +-|++..+.+---.=.. -|+.-. -.+.|++ ....-..-++..+.-++.++|+.|++....|.
T Consensus 98 ~~~~~l~~l~~q~r~qr~~La~~L~A~~r--~g~~p~~~ll~~~eda~~~~R~ai~~~~l~~~~~~~i~~l~~~~~~l~ 174 (420)
T COG4942 98 DLNARLNALEVQEREQRRRLAEQLAALQR--SGRNPPPALLVSPEDAQRSVRLAIYYGALNPARAERIDALKATLKQLA 174 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccCCCCchhhcChhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 2222221 1 12455555444332222 233221 2344554 23344667888888888888888888887774
No 47
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.58 E-value=16 Score=45.52 Aligned_cols=55 Identities=22% Similarity=0.296 Sum_probs=30.4
Q ss_pred chhhhHHHHhhhHHHhHHHHHHHHHHhhcCC-CchhHHHHHHHHHHHH---HHHHHhHH
Q 002678 6 KLQGEIDRVLKKVQEGVDVFDSIWNKVYDTD-NANQKEKFEADLKKEI---KKLQRYRD 60 (893)
Q Consensus 6 KLQ~EIDr~lKKV~EGve~Fd~i~eK~~~a~-n~nQKEKlE~DLKKEI---KKLQR~RD 60 (893)
|-|.|+||--+-+.|--.-=.+--++.+..+ .-.+||+.|.+-|+++ |.|+|.|+
T Consensus 324 kGqaELerRRq~leeqqqreree~eqkEreE~ekkererqEqErk~qlElekqLerQRe 382 (1118)
T KOG1029|consen 324 KGQAELERRRQALEEQQQREREEVEQKEREEEEKKERERQEQERKAQLELEKQLERQRE 382 (1118)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777765554443222222222222222 2346888888888876 56777775
No 48
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=86.57 E-value=34 Score=43.85 Aligned_cols=81 Identities=21% Similarity=0.268 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHhhhh----cccCC--CCchhHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCC-----------hh
Q 002678 138 LVSELESQIDSFEAELEGLT----VKKGK--TRPPRLTHLETSITRHKAHIMKLELILRLLDNDELS-----------PE 200 (893)
Q Consensus 138 ~IdeL~~QiE~~EaEiE~Ls----~KK~K--~~~~r~~~le~~ierhk~Hi~kLE~lLRlLdN~~l~-----------pe 200 (893)
.+.++...+++..-.+|.+. .++++ +...+-......++-.+-||++|+.-|+.|..+.=- -+
T Consensus 407 ~~~~~~t~~k~a~~k~e~~~~elk~~e~e~~t~~~~~~~~~~~ld~~q~eve~l~~~l~~l~~~~~~~e~l~q~~~~l~~ 486 (1174)
T KOG0933|consen 407 TLSEASTEIKQAKLKLEHLRKELKLREGELATASAEYVKDIEELDALQNEVEKLKKRLQSLGYKIGQEEALKQRRAKLHE 486 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHH
Confidence 33344444444444444442 12332 223444555667788889999999999988765431 23
Q ss_pred hhhhhhhHHHHHHHhCCC
Q 002678 201 QVNDVKDLLEDYVERNQD 218 (893)
Q Consensus 201 ~V~~IKddieyYve~nqd 218 (893)
.+..++|.+++.......
T Consensus 487 ~~~~lk~~~~~l~a~~~~ 504 (1174)
T KOG0933|consen 487 DIGRLKDELDRLLARLAN 504 (1174)
T ss_pred HHHHHHHHHHHHHhhhcc
Confidence 445566666666654433
No 49
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=86.43 E-value=12 Score=46.89 Aligned_cols=23 Identities=30% Similarity=0.599 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 002678 132 RDWLNNLVSELESQIDSFEAELE 154 (893)
Q Consensus 132 ~~wL~~~IdeL~~QiE~~EaEiE 154 (893)
..|+.+.+.+++.+++.+++++.
T Consensus 649 ~~~~~~~l~~~~~~~~~~~~~~~ 671 (908)
T COG0419 649 EELLQAALEELEEKVEELEAEIR 671 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445566666666666665
No 50
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=86.34 E-value=64 Score=37.00 Aligned_cols=91 Identities=19% Similarity=0.336 Sum_probs=58.6
Q ss_pred cchhhhHHHHhhhHHHhHHHHHHHHHHhhcC----------------------CCchhHHHHHHHHHHHHHHHHHhHHHH
Q 002678 5 RKLQGEIDRVLKKVQEGVDVFDSIWNKVYDT----------------------DNANQKEKFEADLKKEIKKLQRYRDQI 62 (893)
Q Consensus 5 RKLQ~EIDr~lKKV~EGve~Fd~i~eK~~~a----------------------~n~nQKEKlE~DLKKEIKKLQR~RDQI 62 (893)
+-...|+++.+++|.+-++........++.+ ...--+|.-|.+|+||+.=|...++.+
T Consensus 56 ~~wk~eL~~~l~~~~~Ei~~L~~~K~~le~aL~~~~~pl~i~~ecL~~R~~R~~~dlv~D~ve~eL~kE~~li~~~~~lL 135 (384)
T PF03148_consen 56 RFWKNELERELEELDEEIDLLEEEKRRLEKALEALRKPLSIAQECLSLREKRPGIDLVHDEVEKELLKEVELIENIKRLL 135 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHhCCCCcccCCCcHHHHHHHHHHHHHHHHHHH
Confidence 3456789999999999999888887776622 112236778899999987777666666
Q ss_pred HHhhccccccccccchhhHHHHHHHHHHHHHHHH-HHHHHHh
Q 002678 63 KTWIQSSEIKDKKVSASYEQALVDARKLIEREME-RFKICEK 103 (893)
Q Consensus 63 KtW~~s~eIKDK~~~~~~~~~L~e~RKlIE~~ME-rFK~vEK 103 (893)
+.=+..-.-.= ..|.++|..||..+. +|.+++=
T Consensus 136 ~~~l~~~~eQl--------~~lr~ar~~Le~Dl~dK~~A~~I 169 (384)
T PF03148_consen 136 QRTLEQAEEQL--------RLLRAARYRLEKDLSDKFEALEI 169 (384)
T ss_pred HHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 54443322111 156777777777552 3444433
No 51
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=86.23 E-value=9.5 Score=45.78 Aligned_cols=63 Identities=24% Similarity=0.336 Sum_probs=35.2
Q ss_pred chhhhHHHHhhhHHHhHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhHHHHHHhhcccc
Q 002678 6 KLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSE 70 (893)
Q Consensus 6 KLQ~EIDr~lKKV~EGve~Fd~i~eK~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~e 70 (893)
.||..+++|.|.-.|-+..-..+-+.+.. -..+-++|+..|..+-++...|+.+.|.+....+
T Consensus 140 ~lQ~qlE~~qkE~eeL~~~~~~Le~e~~~--l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e 202 (546)
T PF07888_consen 140 LLQNQLEECQKEKEELLKENEQLEEEVEQ--LREEVERLEAELEQEEEEMEQLKQQQKELTESSE 202 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36777777777666665555554444411 2334556666666555555555555555554443
No 52
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=85.80 E-value=7.6 Score=40.44 Aligned_cols=99 Identities=25% Similarity=0.396 Sum_probs=54.2
Q ss_pred ccccCCCCCCC--------c--hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCc-hhHHHHHHHHHHHHH
Q 002678 112 KEGLGQQPKTD--------P--KEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRP-PRLTHLETSITRHKA 180 (893)
Q Consensus 112 kEGL~~~~k~D--------P--~ekek~E~~~wL~~~IdeL~~QiE~~EaEiE~Ls~KK~K~~~-~r~~~le~~ierhk~ 180 (893)
.+||...+|.. | .-..+....+=|+.-|+.++..++.++.+++.+ +++|... +|...|+ .++..+-
T Consensus 41 DDglV~~EKiGssn~YWsFps~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~--~~~r~~~~eR~~~l~-~l~~l~~ 117 (188)
T PF03962_consen 41 DDGLVHVEKIGSSNYYWSFPSQAKQKRQNKLEKLQKEIEELEKKIEELEEKIEEA--KKGREESEEREELLE-ELEELKK 117 (188)
T ss_pred ccccchhhhccCeeEEEecChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhcccccHHHHHHHH-HHHHHHH
Confidence 45666655554 2 223445555566666666666677777666665 4455433 3332222 2222222
Q ss_pred HHHHHHHHHHhhhCCCCChhhhhhhhhHHHHHHHh
Q 002678 181 HIMKLELILRLLDNDELSPEQVNDVKDLLEDYVER 215 (893)
Q Consensus 181 Hi~kLE~lLRlLdN~~l~pe~V~~IKddieyYve~ 215 (893)
.+..|+.=|. .-...||+.|..+++++..+++.
T Consensus 118 ~~~~l~~el~--~~~~~Dp~~i~~~~~~~~~~~~~ 150 (188)
T PF03962_consen 118 ELKELKKELE--KYSENDPEKIEKLKEEIKIAKEA 150 (188)
T ss_pred HHHHHHHHHH--HHHhcCHHHHHHHHHHHHHHHHH
Confidence 3333333333 22335899999999988877764
No 53
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=85.40 E-value=70 Score=36.06 Aligned_cols=25 Identities=24% Similarity=0.357 Sum_probs=20.1
Q ss_pred HHhhhHHHhHHHHHHHHHHhhcCCC
Q 002678 13 RVLKKVQEGVDVFDSIWNKVYDTDN 37 (893)
Q Consensus 13 r~lKKV~EGve~Fd~i~eK~~~a~n 37 (893)
.+.|+|.||-.+|.++-+.++..+.
T Consensus 74 EL~~~I~egr~~~~~~E~et~~~nP 98 (312)
T smart00787 74 ELKKYISEGRDLFKEIEEETLINNP 98 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 4678999999999998888765543
No 54
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=85.31 E-value=39 Score=34.27 Aligned_cols=21 Identities=10% Similarity=0.064 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 002678 82 QALVDARKLIEREMERFKICE 102 (893)
Q Consensus 82 ~~L~e~RKlIE~~MErFK~vE 102 (893)
..|...+..++..+++|++++
T Consensus 130 ~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 130 ERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 355556666666666665555
No 55
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=85.25 E-value=11 Score=39.48 Aligned_cols=128 Identities=20% Similarity=0.313 Sum_probs=74.7
Q ss_pred hhHHHHhhhHHHhHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHH----HHHHhHHHHHHhhccccccccccchhhHHHH
Q 002678 9 GEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIK----KLQRYRDQIKTWIQSSEIKDKKVSASYEQAL 84 (893)
Q Consensus 9 ~EIDr~lKKV~EGve~Fd~i~eK~~~a~n~nQKEKlE~DLKKEIK----KLQR~RDQIKtW~~s~eIKDK~~~~~~~~~L 84 (893)
.|+.+++-+.+|-|..+-.-+.+.... +.++++.|| .|+|.+|+|+....-.+-|+-....-+...|
T Consensus 57 ~~Lpqll~~h~eEvr~Lr~~LR~~q~~---------~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL 127 (194)
T PF15619_consen 57 AELPQLLQRHNEEVRVLRERLRKSQEQ---------ERELERKLKDKDEELLKTKDELKHLKKLSEDKNLAEREELQRKL 127 (194)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHH
Confidence 466666666666666666666665332 446666666 7889999999877665544433334455667
Q ss_pred HHHHHHHHHHHHHHHHHHhhh--ccccccccccCCCCCCCchHHhHHHHHHHHHHHHHHHHHHHHHH
Q 002678 85 VDARKLIEREMERFKICEKET--KTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDSF 149 (893)
Q Consensus 85 ~e~RKlIE~~MErFK~vEKes--KtKafSkEGL~~~~k~DP~ekek~E~~~wL~~~IdeL~~QiE~~ 149 (893)
.+....++..=++-+.+||.. =+|.|+.+-..... +..+-.+.+..|..-|..|+.+|..-
T Consensus 128 ~~~~~~l~~~~~ki~~Lek~leL~~k~~~rql~~e~k----K~~~~~~~~~~l~~ei~~L~~klkEK 190 (194)
T PF15619_consen 128 SQLEQKLQEKEKKIQELEKQLELENKSFRRQLASEKK----KHKEAQEEVKSLQEEIQRLNQKLKEK 190 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777777743 34556555443211 12233334444444455555444433
No 56
>PRK01156 chromosome segregation protein; Provisional
Probab=85.23 E-value=35 Score=42.51 Aligned_cols=45 Identities=20% Similarity=0.219 Sum_probs=31.4
Q ss_pred cccCCCCCCCchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002678 113 EGLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLT 157 (893)
Q Consensus 113 EGL~~~~k~DP~ekek~E~~~wL~~~IdeL~~QiE~~EaEiE~Ls 157 (893)
+|.+......-.+.-+.+...++..-|.+|+.+++.++.+++.|.
T Consensus 452 ~~~Cp~c~~~~~~e~~~e~i~~~~~~i~~l~~~i~~l~~~~~~l~ 496 (895)
T PRK01156 452 QSVCPVCGTTLGEEKSNHIINHYNEKKSRLEEKIREIEIEVKDID 496 (895)
T ss_pred CCCCCCCCCcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 565543322223556677888888888888888888888887764
No 57
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=85.00 E-value=2.1 Score=44.35 Aligned_cols=63 Identities=25% Similarity=0.465 Sum_probs=38.4
Q ss_pred chhhhHHHHhhhHHHhHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhHHHHHHhhccc-cccccccchhhHHHH
Q 002678 6 KLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSS-EIKDKKVSASYEQAL 84 (893)
Q Consensus 6 KLQ~EIDr~lKKV~EGve~Fd~i~eK~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~-eIKDK~~~~~~~~~L 84 (893)
.+|+|++.+|.+...-|+. .+.|||.|||+|.+-=+++..=+... .+|+|.
T Consensus 102 QVqqeL~~tf~rL~~~Vd~-------------------~~~eL~~eI~~L~~~i~~le~~~~~~k~LrnKa--------- 153 (171)
T PF04799_consen 102 QVQQELSSTFARLCQQVDQ-------------------TKNELEDEIKQLEKEIQRLEEIQSKSKTLRNKA--------- 153 (171)
T ss_dssp --------HHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Confidence 4678888888887766654 45789999998887777776655432 344444
Q ss_pred HHHHHHHHHHHHHHHH
Q 002678 85 VDARKLIEREMERFKI 100 (893)
Q Consensus 85 ~e~RKlIE~~MErFK~ 100 (893)
-.+|.+.|+|+.
T Consensus 154 ----~~L~~eL~~F~~ 165 (171)
T PF04799_consen 154 ----NWLESELERFQE 165 (171)
T ss_dssp ----HHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHH
Confidence 678888999964
No 58
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=84.96 E-value=18 Score=46.35 Aligned_cols=65 Identities=23% Similarity=0.336 Sum_probs=35.2
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHHH----------------hhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 002678 40 QKEKFEADLKKEIKKLQRYRDQIKT----------------WIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEK 103 (893)
Q Consensus 40 QKEKlE~DLKKEIKKLQR~RDQIKt----------------W~~s~eIKDK~~~~~~~~~L~e~RKlIE~~MErFK~vEK 103 (893)
++++-=.-|||+||-++-.+++|-. |..=+++- ..|.+++..|-..=|+-+.|.+
T Consensus 232 ~~~e~i~~l~k~i~e~~e~~~~~~~~e~~~~~l~~Lk~k~~W~~V~~~~---------~ql~~~~~~i~~~qek~~~l~~ 302 (1074)
T KOG0250|consen 232 LKEEEIKNLKKKIKEEEEKLDNLEQLEDLKENLEQLKAKMAWAWVNEVE---------RQLNNQEEEIKKKQEKVDTLQE 302 (1074)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555556677777777777774432 44333322 2555555555444455555666
Q ss_pred hhcccccccc
Q 002678 104 ETKTKAFSKE 113 (893)
Q Consensus 104 esKtKafSkE 113 (893)
.++-+..-.+
T Consensus 303 ki~~~~~k~~ 312 (1074)
T KOG0250|consen 303 KIEEKQGKIE 312 (1074)
T ss_pred HHHHHHHHHH
Confidence 6655544333
No 59
>PF13166 AAA_13: AAA domain
Probab=84.81 E-value=31 Score=41.62 Aligned_cols=27 Identities=33% Similarity=0.451 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002678 130 ETRDWLNNLVSELESQIDSFEAELEGL 156 (893)
Q Consensus 130 E~~~wL~~~IdeL~~QiE~~EaEiE~L 156 (893)
...+=++..|++.++.++.++.+.+.+
T Consensus 370 ~~i~~~n~~i~~~n~~~~~~~~~~~~~ 396 (712)
T PF13166_consen 370 SIIDELNELIEEHNEKIDNLKKEQNEL 396 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555554
No 60
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=84.81 E-value=38 Score=41.04 Aligned_cols=77 Identities=18% Similarity=0.330 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhCCC-------CChhhhhhhhh
Q 002678 135 LNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDE-------LSPEQVNDVKD 207 (893)
Q Consensus 135 L~~~IdeL~~QiE~~EaEiE~Ls~KK~K~~~~r~~~le~~ierhk~Hi~kLE~lLRlLdN~~-------l~pe~V~~IKd 207 (893)
..+.+++|+++++.++.|++.+..+..+-.......+....++......+.+.+.++...+. +..++++++++
T Consensus 213 p~~~l~~l~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~~~~~l~GWvP~~~~~~l~~ 292 (646)
T PRK05771 213 PSELIREIKEELEEIEKERESLLEELKELAKKYLEELLALYEYLEIELERAEALSKFLKTDKTFAIEGWVPEDRVKKLKE 292 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcEEEEEEEeehhHHHHHHH
Confidence 46677777777777777776663221111111111222233344444445555555555443 34677777777
Q ss_pred HHHH
Q 002678 208 LLED 211 (893)
Q Consensus 208 diey 211 (893)
.++.
T Consensus 293 ~l~~ 296 (646)
T PRK05771 293 LIDK 296 (646)
T ss_pred HHHH
Confidence 7764
No 61
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=84.79 E-value=4.6 Score=53.81 Aligned_cols=103 Identities=25% Similarity=0.353 Sum_probs=63.7
Q ss_pred CccccchhhhHHHHhhhHHHhHHHHHHH----HHHhhcCCCchhHHHHH------HHHHHHHHHHHHhHHHHHHhhcc--
Q 002678 1 MGASRKLQGEIDRVLKKVQEGVDVFDSI----WNKVYDTDNANQKEKFE------ADLKKEIKKLQRYRDQIKTWIQS-- 68 (893)
Q Consensus 1 Maa~RKLQ~EIDr~lKKV~EGve~Fd~i----~eK~~~a~n~nQKEKlE------~DLKKEIKKLQR~RDQIKtW~~s-- 68 (893)
||...||+-|.||+.++.++-++-+.++ |+|+.+ +..+.|++++ +||++++.+|| .+||.-+..
T Consensus 1277 ~ael~~l~~e~~~wK~R~q~L~~k~k~~d~~~~~kL~~-ei~~Lk~el~~ke~~~~el~~~~~~~q---~~~k~qld~l~ 1352 (1822)
T KOG4674|consen 1277 VAELKKLEEENDRWKQRNQDLLEKYKDSDKNDYEKLKS-EISRLKEELEEKENLIAELKKELNRLQ---EKIKKQLDELN 1352 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 4667889999999999999998886543 666655 4455555554 58888888887 666665532
Q ss_pred ccccccccchhhHHHHHHHHHHHHHHHHHHHH--HHhhhccccc
Q 002678 69 SEIKDKKVSASYEQALVDARKLIEREMERFKI--CEKETKTKAF 110 (893)
Q Consensus 69 ~eIKDK~~~~~~~~~L~e~RKlIE~~MErFK~--vEKesKtKaf 110 (893)
++++++. .-.+.|.+.-...+...+-|.+ +|...++++.
T Consensus 1353 ~e~~~lt---~~~~ql~~~~~rL~~~~~e~~~q~~el~~~~~~~ 1393 (1822)
T KOG4674|consen 1353 NEKANLT---KELEQLEDLKTRLAAALSEKNAQELELSDKKKAH 1393 (1822)
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444443 1122344444555555555533 3555555543
No 62
>PRK03918 chromosome segregation protein; Provisional
Probab=84.21 E-value=27 Score=43.03 Aligned_cols=12 Identities=17% Similarity=0.711 Sum_probs=6.6
Q ss_pred hHHHHHHHHHHh
Q 002678 21 GVDVFDSIWNKV 32 (893)
Q Consensus 21 Gve~Fd~i~eK~ 32 (893)
|++.|+.+|+++
T Consensus 156 ~~~~~~~~~~~~ 167 (880)
T PRK03918 156 GLDDYENAYKNL 167 (880)
T ss_pred CCHHHHHHHHHH
Confidence 555555555544
No 63
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=84.07 E-value=24 Score=34.17 Aligned_cols=23 Identities=13% Similarity=0.224 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 002678 132 RDWLNNLVSELESQIDSFEAELE 154 (893)
Q Consensus 132 ~~wL~~~IdeL~~QiE~~EaEiE 154 (893)
...|...++.|+..-+.+...++
T Consensus 74 ~~~i~~~~~~l~~~w~~l~~~~~ 96 (213)
T cd00176 74 AEEIQERLEELNQRWEELRELAE 96 (213)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666666666655543
No 64
>PTZ00464 SNF-7-like protein; Provisional
Probab=83.84 E-value=39 Score=36.17 Aligned_cols=43 Identities=9% Similarity=0.126 Sum_probs=24.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhCC-----CCChhhhhhhhhHH
Q 002678 167 RLTHLETSITRHKAHIMKLELILRLLDND-----ELSPEQVNDVKDLL 209 (893)
Q Consensus 167 r~~~le~~ierhk~Hi~kLE~lLRlLdN~-----~l~pe~V~~IKddi 209 (893)
-|++++..++-.+.++..-+.|=.+|-+. .+|.++|++=-+.|
T Consensus 122 ~id~Vd~l~Dei~E~~e~~~EI~e~Ls~~~~~~~~~DEdELe~ELe~L 169 (211)
T PTZ00464 122 NVDKVEDLQDELADLYEDTQEIQEIMGRAYDVPDDIDEDEMLGELDAL 169 (211)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHH
Confidence 35666666666666666666666666652 34544444433333
No 65
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=83.45 E-value=15 Score=49.96 Aligned_cols=65 Identities=29% Similarity=0.266 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc-------------CCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002678 128 KSETRDWLNNLVSELESQIDSFEAELEGLTVKK-------------GKTRPPRLTHLETSITRHKAHIMKLELILRLL 192 (893)
Q Consensus 128 k~E~~~wL~~~IdeL~~QiE~~EaEiE~Ls~KK-------------~K~~~~r~~~le~~ierhk~Hi~kLE~lLRlL 192 (893)
..|.++=++..+++|..|....|.|+-.+..|- .|.-+.||.+|+..++--+--..|+|.-.+-|
T Consensus 1053 ~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL 1130 (1930)
T KOG0161|consen 1053 LQESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDL 1130 (1930)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333456666666666666666665553221 11113456666666665555556666555544
No 66
>PF05833 FbpA: Fibronectin-binding protein A N-terminus (FbpA); InterPro: IPR008616 This family consists of the N-terminal region of the prokaryotic fibronectin-binding protein, the C-terminal region is IPR008532 from INTERPRO. Fibronectin binding is considered to be an important virulence factor in streptococcal infections. Fibronectin is a dimeric glycoprotein that is present in a soluble form in plasma and extracellular fluids; it is also present in a fibrillar form on cell surfaces. Both the soluble and cellular forms of fibronectin may be incorporated into the extracellular tissue matrix. While fibronectin has critical roles in eukaryotic cellular processes, such as adhesion, migration and differentiation, it is also a substrate for the attachment of bacteria. The binding of pathogenic Streptococcus pyogenes and Staphylococcus aureus to epithelial cells via fibronectin facilitates their internalisation and systemic spread within the host [].; PDB: 3DOA_A 2ZBK_F 2HKJ_A 1Z5B_A 1Z5C_B 1MX0_F 1Z5A_A 1MU5_A 1Z59_A.
Probab=83.07 E-value=0.47 Score=53.87 Aligned_cols=41 Identities=24% Similarity=0.405 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhhhhhhhHH
Q 002678 168 LTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLL 209 (893)
Q Consensus 168 ~~~le~~ierhk~Hi~kLE~lLRlLdN~~l~pe~V~~IKddi 209 (893)
++.++..++..+-=+..||.++..|+.-. +++++.+|++.+
T Consensus 396 ~~~~~~~i~~~~~el~~l~~~~~~l~~a~-~~~~l~~i~~el 436 (455)
T PF05833_consen 396 IEKLEERIEEAEKELEYLESKLEQLEEAE-DLEELEEIREEL 436 (455)
T ss_dssp ------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHH
Confidence 34444455554455555666666555332 456666666665
No 67
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional
Probab=82.95 E-value=7.3 Score=41.04 Aligned_cols=25 Identities=16% Similarity=0.472 Sum_probs=20.2
Q ss_pred CCCCChhhhhhhhhHHHHHHHhCCC
Q 002678 194 NDELSPEQVNDVKDLLEDYVERNQD 218 (893)
Q Consensus 194 N~~l~pe~V~~IKddieyYve~nqd 218 (893)
|..++.|.|++|.|+|+..++-.++
T Consensus 124 ~k~~~idkVd~lmDei~E~~e~~~E 148 (191)
T PTZ00446 124 NNEINTQKVEKIIDTIQENKDIQEE 148 (191)
T ss_pred HhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 4667899999999999998875543
No 68
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=82.91 E-value=23 Score=46.39 Aligned_cols=46 Identities=24% Similarity=0.323 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhhccccccccccchhhHHHHHHHHHHHHHHH
Q 002678 41 KEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREM 95 (893)
Q Consensus 41 KEKlE~DLKKEIKKLQR~RDQIKtW~~s~eIKDK~~~~~~~~~L~e~RKlIE~~M 95 (893)
..-++.+|.+.-+.|+.+++.|. +.-....|+..|.+.+..|+..+
T Consensus 607 l~~~~~~l~~~~~eL~~~~~~i~---------~~~~~~~~~~~L~~~~~~l~~~~ 652 (1311)
T TIGR00606 607 KNHINNELESKEEQLSSYEDKLF---------DVCGSQDEESDLERLKEEIEKSS 652 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh---------cCCCchhHHHHHHHHHHHHHHHH
Confidence 34455666666666777777777 21123458889999999999888
No 69
>cd07672 F-BAR_PSTPIP2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 2. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 2 (PSTPIP2), also known as Macrophage Actin-associated tYrosine Phosphorylated protein (MAYP), is mostly expressed in hematopoietic cells but is also expressed in the brain. It is involved in regulating cell adhesion and motility. Mutations in the gene encoding murine PSTPIP2 can cause autoinflammatory disorders such as chronic multifocal osteomyelitis and macrophage autoinflammatory disease. PSTPIP2 contains an N-terminal F-BAR domain and lacks the PEST motifs and SH3 domain that are found in PSTPIP1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They ca
Probab=82.73 E-value=41 Score=36.35 Aligned_cols=19 Identities=16% Similarity=0.135 Sum_probs=14.4
Q ss_pred CCChhhhhhhhhHHHHHHH
Q 002678 196 ELSPEQVNDVKDLLEDYVE 214 (893)
Q Consensus 196 ~l~pe~V~~IKddieyYve 214 (893)
.|+-|+|+=+|+-|=-|..
T Consensus 204 ~lEeeRi~f~k~~lw~~~n 222 (240)
T cd07672 204 KQECERINFFRNAVWTHVN 222 (240)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4577888888988877763
No 70
>cd07598 BAR_FAM92 The Bin/Amphiphysin/Rvs (BAR) domain of Family with sequence similarity 92 (FAM92). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of proteins from the family with sequence similarity 92 (FAM92), which were originally identified by the presence of the unknown domain DUF1208. This domain shows similarity to the BAR domains of sorting nexins. Mammals contain at least two member types, FAM92A and FAM92B, which may exist in many variants. The Xenopus homolog of FAM92A1, xVAP019, is essential for embryo survival and cell differentiation. FAM92A1 may be involved in regulating cell proliferation and apoptosis. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=82.61 E-value=19 Score=38.23 Aligned_cols=83 Identities=19% Similarity=0.177 Sum_probs=42.3
Q ss_pred cchhhhHHHHhhhHHHhHHHHHHHHH---HhhcCCCchhHHHHHHHHHHHHHHHHHhHHH-HHHhhccccccccccchhh
Q 002678 5 RKLQGEIDRVLKKVQEGVDVFDSIWN---KVYDTDNANQKEKFEADLKKEIKKLQRYRDQ-IKTWIQSSEIKDKKVSASY 80 (893)
Q Consensus 5 RKLQ~EIDr~lKKV~EGve~Fd~i~e---K~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQ-IKtW~~s~eIKDK~~~~~~ 80 (893)
+||.+.+..+.+|-.+-.+..|++-. -+-+++|.+-+..|.+=- ..+.|+|.||+- +..-. +-.
T Consensus 21 ~~l~~~~~~lv~k~~~L~~~~~~fak~~~~la~~E~~~L~~~L~~la-e~~~~i~d~~q~qv~~l~-----------~~v 88 (211)
T cd07598 21 GELCQDFAAYTRKTARLRDKGDELAKSINAYADTENPSLKQGLKNFA-ECLAALQDYRQAEVERLE-----------AKV 88 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH-----------HHH
Confidence 45566666666665554444444333 333555655555554422 556666655542 11100 113
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 002678 81 EQALVDARKLIEREMERFK 99 (893)
Q Consensus 81 ~~~L~e~RKlIE~~MErFK 99 (893)
..+|-+|-.+|=..|+.||
T Consensus 89 ~epLk~Y~~l~k~~k~~~K 107 (211)
T cd07598 89 VQPLALYGTICKHARDDLK 107 (211)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3466666666666666666
No 71
>PF09745 DUF2040: Coiled-coil domain-containing protein 55 (DUF2040); InterPro: IPR018612 This entry represents a conserved domain of approximately 130 residues of proteins conserved from fungi to humans. Some proteins containing this domain are described as coiled-coil domain-containing protein 55, but the function is unknown.
Probab=82.60 E-value=7.5 Score=38.54 Aligned_cols=98 Identities=26% Similarity=0.427 Sum_probs=62.1
Q ss_pred chhhhHHHHhhhHHHhHHHHHHHHHHhhcCCCchhH-----------HHHHHHH------------HHHHHHHHHhHHHH
Q 002678 6 KLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQK-----------EKFEADL------------KKEIKKLQRYRDQI 62 (893)
Q Consensus 6 KLQ~EIDr~lKKV~EGve~Fd~i~eK~~~a~n~nQK-----------EKlE~DL------------KKEIKKLQR~RDQI 62 (893)
+.+.++.+.|. .+--|=.||.||+-|......+.. -||=+.| ..+=+||||=|+.
T Consensus 2 ~~~~~~~~A~~-~DptvfdYD~vYD~m~~~~~~~~~~~~~~~~~~rkpKYi~~Ll~~A~~Rk~E~~~~~ErklqKERe~- 79 (127)
T PF09745_consen 2 QAKKEAQKALE-EDPTVFDYDEVYDDMKAKKEEKKQAKQQEDKEKRKPKYISNLLKAAKRRKRERERAEERKLQKEREA- 79 (127)
T ss_pred chHHHHHHHhc-cCChHhhHHHHHHHHhhhhHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence 34556666554 455667788999999855443222 2232222 2233566666653
Q ss_pred HHhhccccccccc--cchhhHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 002678 63 KTWIQSSEIKDKK--VSASYEQALVDARKLIEREMERFKICEKETKTKA 109 (893)
Q Consensus 63 KtW~~s~eIKDK~--~~~~~~~~L~e~RKlIE~~MErFK~vEKesKtKa 109 (893)
.+.+..||. |...|-..|.|.|++-|..-++=...++..+||.
T Consensus 80 ----Eg~~f~dkE~FVT~AYKkkleE~k~~eeee~~~e~~e~~~~~~k~ 124 (127)
T PF09745_consen 80 ----EGDEFADKEKFVTSAYKKKLEERKKWEEEEKRREELEEKNDVTKQ 124 (127)
T ss_pred ----cccccccceeeehHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccc
Confidence 344566666 8889999999999999987777666666666654
No 72
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=82.50 E-value=40 Score=44.20 Aligned_cols=83 Identities=20% Similarity=0.259 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcccCC------CCchhHHHHHHHHHHHHHHHHHHHHHHHhh---------hCCCC
Q 002678 133 DWLNNLVSELESQIDSFEAELEGLTVKKGK------TRPPRLTHLETSITRHKAHIMKLELILRLL---------DNDEL 197 (893)
Q Consensus 133 ~wL~~~IdeL~~QiE~~EaEiE~Ls~KK~K------~~~~r~~~le~~ierhk~Hi~kLE~lLRlL---------dN~~l 197 (893)
+=+...+.+++.+++.++.+++.+...... .....+..|+.-.+.|.-++.++..+++-| +++.+
T Consensus 308 ~~f~~~~~e~~~~~~~le~e~~~l~~el~~l~~~~~~l~~e~gkl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (1311)
T TIGR00606 308 HNHQRTVREKERELVDCQRELEKLNKERRLLNQEKTELLVEQGRLQLQADRHQEHIRARDSLIQSLATRLELDGFERGPF 387 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCCCccc
Confidence 333444566666666666666666322111 112345556666677888888888877743 33345
Q ss_pred ChhhhhhhhhHHHHHHHh
Q 002678 198 SPEQVNDVKDLLEDYVER 215 (893)
Q Consensus 198 ~pe~V~~IKddieyYve~ 215 (893)
+..+|.++.+.|+..+..
T Consensus 388 ~~~~~~~~~~~~~~~~~~ 405 (1311)
T TIGR00606 388 SERQIKNFHTLVIERQED 405 (1311)
T ss_pred chHHHHHHHHHHHHHHHH
Confidence 566777777777766653
No 73
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=81.80 E-value=76 Score=34.03 Aligned_cols=28 Identities=21% Similarity=0.354 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhhhCCCCC-hhhhhhhhhH
Q 002678 181 HIMKLELILRLLDNDELS-PEQVNDVKDL 208 (893)
Q Consensus 181 Hi~kLE~lLRlLdN~~l~-pe~V~~IKdd 208 (893)
...+|+.|-.+|++..|+ .|++..|-|-
T Consensus 129 R~~Rl~~L~~~l~~~dv~~~ek~r~vlea 157 (251)
T PF11932_consen 129 RQERLARLRAMLDDADVSLAEKFRRVLEA 157 (251)
T ss_pred HHHHHHHHHHhhhccCCCHHHHHHHHHHH
Confidence 356778888889999887 4555555443
No 74
>PF12729 4HB_MCP_1: Four helix bundle sensory module for signal transduction; InterPro: IPR024478 This entry represents a four-helix bundle that operates as a ubiquitous sensory module in prokaryotic signal-transduction, which is known as four-helix bundles methyl-accepting chemotaxis protein (4HB_MCP) domain. The 4HB_MCP is always found between two predicted transmembrane helices indicating that it detects only extracellular signals. In many cases the domain is associated with a cytoplasmic HAMP domain suggesting that most proteins carrying the bundle might share the mechanism of transmembrane signalling which is well-characterised in E coli chemoreceptors [].
Probab=81.76 E-value=22 Score=33.43 Aligned_cols=109 Identities=19% Similarity=0.260 Sum_probs=52.1
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHhHHHHHHhhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhcccccccc
Q 002678 34 DTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKE 113 (893)
Q Consensus 34 ~a~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~eIKDK~~~~~~~~~L~e~RKlIE~~MErFK~vEKesKtKafSkE 113 (893)
...+...+++++.+++..++++.+.-+.++....+.+- |.....+...+.++++..+.-|+..+.=..+ +...+...
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~-~a~~~~~~ 146 (181)
T PF12729_consen 70 LATDPEERQEIEKEIDEARAEIDEALEEYEKLILSPEE--KQLLEEFKEAWKAYRKLRDQVIELAKSGDND-EARAILNG 146 (181)
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH-HHHHHHHH
Confidence 34555667777777777777666666666665555442 2211222333333333333333322211111 00011111
Q ss_pred ccCCCCCCCchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002678 114 GLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELE 154 (893)
Q Consensus 114 GL~~~~k~DP~ekek~E~~~wL~~~IdeL~~QiE~~EaEiE 154 (893)
.-.....+..+-|.+.++.-.++.+..-.+.+
T Consensus 147 ---------~~~~~~~~~~~~l~~l~~~~~~~a~~~~~~~~ 178 (181)
T PF12729_consen 147 ---------EARPAFDELRDALDELIEYNNQQAEQAYAEAQ 178 (181)
T ss_pred ---------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11244455666667777777777766655543
No 75
>PRK01156 chromosome segregation protein; Provisional
Probab=81.66 E-value=35 Score=42.50 Aligned_cols=23 Identities=17% Similarity=0.231 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHhhhCCCCC
Q 002678 176 TRHKAHIMKLELILRLLDNDELS 198 (893)
Q Consensus 176 erhk~Hi~kLE~lLRlLdN~~l~ 198 (893)
++.+.-+..|+.+-+.|++..+.
T Consensus 729 ~~~~~~~~~l~~~r~~l~k~~~~ 751 (895)
T PRK01156 729 KKIKKAIGDLKRLREAFDKSGVP 751 (895)
T ss_pred HHHHHHHHHHHHHHHHhhhccch
Confidence 33344456666777777765553
No 76
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=81.59 E-value=21 Score=46.41 Aligned_cols=91 Identities=26% Similarity=0.278 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHhHHHHHHhhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCCCchHH
Q 002678 47 DLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEK 126 (893)
Q Consensus 47 DLKKEIKKLQR~RDQIKtW~~s~eIKDK~~~~~~~~~L~e~RKlIE~~MErFK~vEKesKtKafSkEGL~~~~k~DP~ek 126 (893)
.++++|+|+|-+|..--.-++.++-.. .+..|.-.++.++.+.|+ +..|-|-. ++..++.
T Consensus 641 ~~~~~l~k~~el~r~~~e~~~~~ek~~------~e~~~e~~lk~~q~~~eq---~~~E~~~~-----------~L~~~e~ 700 (1317)
T KOG0612|consen 641 AGKKELLKVEELKRENQERISDSEKEA------LEIKLERKLKMLQNELEQ---ENAEHHRL-----------RLQDKEA 700 (1317)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHH---HHHHHHHH-----------HHhhHHH
Confidence 356677777766665555555544210 111344444555544444 22222222 2333477
Q ss_pred hHHHHHHHHHHHH---HHHHHHHHHHHHHHhhhh
Q 002678 127 AKSETRDWLNNLV---SELESQIDSFEAELEGLT 157 (893)
Q Consensus 127 ek~E~~~wL~~~I---deL~~QiE~~EaEiE~Ls 157 (893)
+..|+..||.+-. ..+..-.-.+++|+|.|.
T Consensus 701 ~~~e~~~~lseek~ar~k~e~~~~~i~~e~e~L~ 734 (1317)
T KOG0612|consen 701 QMKEIESKLSEEKSAREKAENLLLEIEAELEYLS 734 (1317)
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHh
Confidence 7788888887533 233333444666666664
No 77
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=81.41 E-value=15 Score=45.28 Aligned_cols=105 Identities=24% Similarity=0.348 Sum_probs=51.6
Q ss_pred cCCCchhHHHHHH---HHHHHHHHHHHhHHHHHHhhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Q 002678 34 DTDNANQKEKFEA---DLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAF 110 (893)
Q Consensus 34 ~a~n~nQKEKlE~---DLKKEIKKLQR~RDQIKtW~~s~eIKDK~~~~~~~~~L~e~RKlIE~~MErFK~vEKesKtKaf 110 (893)
++.+.+-|+-|-. .|.|-.--|.|-||-+|-=+.+ ||+---.+...+-|.|.--.|-.-|+. =||-
T Consensus 397 ~s~~ssl~~e~~QRva~lEkKvqa~~kERDalr~e~ks--lk~ela~~l~~DeLaEkdE~I~~lm~E---GEkL------ 465 (961)
T KOG4673|consen 397 ESEVSSLREEYHQRVATLEKKVQALTKERDALRREQKS--LKKELAAALLKDELAEKDEIINQLMAE---GEKL------ 465 (961)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH--HHHHHHHhhhhHHHHHHHHHHHHHHHH---HHHh------
Confidence 4444555555543 3444444455666665544332 333222222333556666677777765 3443
Q ss_pred cccccCCCC---CCCchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002678 111 SKEGLGQQP---KTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGL 156 (893)
Q Consensus 111 SkEGL~~~~---k~DP~ekek~E~~~wL~~~IdeL~~QiE~~EaEiE~L 156 (893)
||+-|.... |+-.++|+-. +++..+..+|-.|+.|.+.|
T Consensus 466 SK~ql~qs~iIkKLRAk~ke~e-------tl~~K~ge~i~~L~sE~~~l 507 (961)
T KOG4673|consen 466 SKKQLAQSAIIKKLRAKIKEAE-------TLEEKKGELITKLQSEENKL 507 (961)
T ss_pred HHHHHHHHHHHHHHHHHhhhhh-------HHHHHhhhHHHHHHHHHHHH
Confidence 333343221 2222222222 45666777777777777777
No 78
>PRK11637 AmiB activator; Provisional
Probab=81.26 E-value=24 Score=40.45 Aligned_cols=25 Identities=0% Similarity=-0.045 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q 002678 81 EQALVDARKLIEREMERFKICEKET 105 (893)
Q Consensus 81 ~~~L~e~RKlIE~~MErFK~vEKes 105 (893)
+..|.+.++.|+.+-+.|+..=+.+
T Consensus 109 ~~eI~~~q~~l~~~~~~l~~rlra~ 133 (428)
T PRK11637 109 NASIAKLEQQQAAQERLLAAQLDAA 133 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3478888888888777776654443
No 79
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=81.23 E-value=47 Score=32.53 Aligned_cols=122 Identities=19% Similarity=0.327 Sum_probs=74.9
Q ss_pred ccchhhhHHHHhhhHHHhHHHHHHHHHHhhcCCC--chhHHHHHHHHHH---HHHHHHHhHHHHHHhhccccccccccch
Q 002678 4 SRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDN--ANQKEKFEADLKK---EIKKLQRYRDQIKTWIQSSEIKDKKVSA 78 (893)
Q Consensus 4 ~RKLQ~EIDr~lKKV~EGve~Fd~i~eK~~~a~n--~nQKEKlE~DLKK---EIKKLQR~RDQIKtW~~s~eIKDK~~~~ 78 (893)
...|+.||.+....+.+-......+-+.+..-.. ..-.+|||.+|-+ .|+.|+++|++...-
T Consensus 5 ~~~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~------------- 71 (132)
T PF07926_consen 5 LSSLQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQEL------------- 71 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-------------
Confidence 3457778887777777777666666665543222 1126789999875 689999999987542
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCCCchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002678 79 SYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGL 156 (893)
Q Consensus 79 ~~~~~L~e~RKlIE~~MErFK~vEKesKtKafSkEGL~~~~k~DP~ekek~E~~~wL~~~IdeL~~QiE~~EaEiE~L 156 (893)
...+.+.|..++.....+...|..-+. ....-..-..=+..-|++|+.|+..|-..||.+
T Consensus 72 --~~~~~~l~~~~~~a~~~l~~~e~sw~~----------------qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE~l 131 (132)
T PF07926_consen 72 --QQEINELKAEAESAKAELEESEASWEE----------------QKEQLEKELSELEQRIEDLNEQNKLLHDQLESL 131 (132)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHhHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 225666666666666666544433110 111112234445566777777777777766665
No 80
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=81.08 E-value=29 Score=45.16 Aligned_cols=27 Identities=7% Similarity=0.243 Sum_probs=16.9
Q ss_pred chhhhHHHHhhhHHHhHHHHHHHHHHh
Q 002678 6 KLQGEIDRVLKKVQEGVDVFDSIWNKV 32 (893)
Q Consensus 6 KLQ~EIDr~lKKV~EGve~Fd~i~eK~ 32 (893)
.|+.+++.+-++++...+.++++=+.+
T Consensus 604 ~L~~~l~~~~~~l~~~~~~~~~~e~~l 630 (1201)
T PF12128_consen 604 ELRERLEQAEDQLQSAEERQEELEKQL 630 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777777777666665543333
No 81
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=81.08 E-value=48 Score=43.23 Aligned_cols=17 Identities=18% Similarity=0.315 Sum_probs=8.6
Q ss_pred HhHHHHHHHHHHHHHHH
Q 002678 126 KAKSETRDWLNNLVSEL 142 (893)
Q Consensus 126 kek~E~~~wL~~~IdeL 142 (893)
+-|.|+.+-|..+-+.|
T Consensus 1693 ~L~~eA~~Ll~~a~~kl 1709 (1758)
T KOG0994|consen 1693 QLRTEAEKLLGQANEKL 1709 (1758)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455555555554444
No 82
>PRK09039 hypothetical protein; Validated
Probab=81.01 E-value=46 Score=37.72 Aligned_cols=47 Identities=17% Similarity=0.348 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCchhHHHHHHHHHH
Q 002678 130 ETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITR 177 (893)
Q Consensus 130 E~~~wL~~~IdeL~~QiE~~EaEiE~Ls~KK~K~~~~r~~~le~~ier 177 (893)
-....|+.-|+.|+.|+..+|++|+.+..+ .+....++++|+..|+.
T Consensus 137 ~~V~~L~~qI~aLr~Qla~le~~L~~ae~~-~~~~~~~i~~L~~~L~~ 183 (343)
T PRK09039 137 AQVELLNQQIAALRRQLAALEAALDASEKR-DRESQAKIADLGRRLNV 183 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 346778888888888888888888776322 22233445555544433
No 83
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=80.81 E-value=31 Score=43.25 Aligned_cols=43 Identities=26% Similarity=0.426 Sum_probs=31.8
Q ss_pred hhHHHHHHHHHHH-------HHHHHHHHHHHHhhhCCCCCh-hhhhhhhhH
Q 002678 166 PRLTHLETSITRH-------KAHIMKLELILRLLDNDELSP-EQVNDVKDL 208 (893)
Q Consensus 166 ~r~~~le~~ierh-------k~Hi~kLE~lLRlLdN~~l~p-e~V~~IKdd 208 (893)
.|+..|+.-+.+| +--|.+|-.||+-++|+..+. -+|.++...
T Consensus 548 ~r~~~Le~ev~~~~ee~~kaq~EVERLl~~L~~~E~EK~~ke~ki~~Leke 598 (775)
T PF10174_consen 548 DRIQQLEQEVTRYREESEKAQAEVERLLDILREAENEKNDKEKKIGELEKE 598 (775)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4677777766555 567899999999999998874 556666655
No 84
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=80.76 E-value=59 Score=34.68 Aligned_cols=41 Identities=32% Similarity=0.447 Sum_probs=25.4
Q ss_pred cccchhhhHHHHhhhHHHhHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHH
Q 002678 3 ASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQ 56 (893)
Q Consensus 3 a~RKLQ~EIDr~lKKV~EGve~Fd~i~eK~~~a~n~nQKEKlE~DLKKEIKKLQ 56 (893)
++|||+.|. +|+.--|+.|++.=.++ .+.+ .||++++|-||
T Consensus 16 ~n~~L~~en----~kL~~~ve~~ee~na~L--------~~e~-~~L~~q~~s~Q 56 (193)
T PF14662_consen 16 NNQKLADEN----AKLQRSVETAEEGNAQL--------AEEI-TDLRKQLKSLQ 56 (193)
T ss_pred HhHHHHHHH----HHHHHHHHHHHHHHHHH--------HHHH-HHHHHHHHHHH
Confidence 467888875 45566677888765555 2222 25666666665
No 85
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=80.51 E-value=15 Score=34.64 Aligned_cols=32 Identities=38% Similarity=0.563 Sum_probs=27.5
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002678 125 EKAKSETRDWLNNLVSELESQIDSFEAELEGL 156 (893)
Q Consensus 125 ekek~E~~~wL~~~IdeL~~QiE~~EaEiE~L 156 (893)
+....+|.+||.+-|+.|+.+++.++.+++.+
T Consensus 82 e~~~~eA~~~l~~r~~~l~~~~~~l~~~~~~~ 113 (129)
T cd00890 82 EKSLEEAIEFLKKRLETLEKQIEKLEKQLEKL 113 (129)
T ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56678889999999999999999999888765
No 86
>PF08429 PLU-1: PLU-1-like protein; InterPro: IPR013637 This domain is found in the central region of lysine-specific demethylases, which are nuclear proteins that may have a role in DNA-binding and transcription, and are associated with malignant cancer phenotypes []. The domain is also found in various other Jumonji/ARID domain-containing proteins (see IPR013129 from INTERPRO, IPR001606 from INTERPRO). ; GO: 0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, 0055114 oxidation-reduction process
Probab=80.10 E-value=35 Score=37.60 Aligned_cols=79 Identities=25% Similarity=0.422 Sum_probs=48.3
Q ss_pred hHHHHhhhHHHhHHHHHHHHHHhhcCCCchhHHHHHHHHH---------HHHHHHHHhHHHHHHhhccccc-cccccchh
Q 002678 10 EIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLK---------KEIKKLQRYRDQIKTWIQSSEI-KDKKVSAS 79 (893)
Q Consensus 10 EIDr~lKKV~EGve~Fd~i~eK~~~a~n~nQKEKlE~DLK---------KEIKKLQR~RDQIKtW~~s~eI-KDK~~~~~ 79 (893)
||+. |+..-+-|+.|..--.++.......--+.+|.=|. -||..|.+..+|.+ |+..-.- -...
T Consensus 104 Ei~~-L~~l~~~ve~f~~~a~~~L~~~~~~~~~~le~Ll~~g~s~~v~lpel~~L~~~l~~~~-W~~~~~~~~~~~---- 177 (335)
T PF08429_consen 104 EIDQ-LKELLEEVEEFQSRAQEALSDPESPSLEELEELLEEGESFGVDLPELDQLRRRLEQLE-WLEEAREILSDP---- 177 (335)
T ss_pred hHHH-HHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHhcccCceeChhHHHHHHHHHHHH-HHHHHHHHhccc----
Confidence 4444 56666778888887777776522222556666555 38888888888876 9876432 1111
Q ss_pred hHHHHHHHHHHHHHH
Q 002678 80 YEQALVDARKLIERE 94 (893)
Q Consensus 80 ~~~~L~e~RKlIE~~ 94 (893)
..-.|.+.|++|++.
T Consensus 178 ~~~tL~~l~~Ll~~g 192 (335)
T PF08429_consen 178 DRLTLDELRELLDEG 192 (335)
T ss_pred cCCcHHHHHHHHHhh
Confidence 001577777777653
No 87
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=80.10 E-value=8.7 Score=38.66 Aligned_cols=76 Identities=20% Similarity=0.337 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHHhhhhcccC-CCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhCCC--CChhhhhhhhhHHHHHHH
Q 002678 139 VSELESQIDSFEAELEGLTVKKG-KTRPPRLTHLETSITRHKAHIMKLELILRLLDNDE--LSPEQVNDVKDLLEDYVE 214 (893)
Q Consensus 139 IdeL~~QiE~~EaEiE~Ls~KK~-K~~~~r~~~le~~ierhk~Hi~kLE~lLRlLdN~~--l~pe~V~~IKddieyYve 214 (893)
|.+|+.|+..++.++-.|...-. =......++|...|+..+--+..||.-|..|..+. ++++++..|......|..
T Consensus 81 i~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~~~~~vs~ee~~~~~~~~~~~~k 159 (169)
T PF07106_consen 81 IKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRSGSKPVSPEEKEKLEKEYKKWRK 159 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH
Confidence 66666666666666555532111 12234456777788777777888888777776644 789999999998888875
No 88
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=80.01 E-value=19 Score=41.67 Aligned_cols=22 Identities=18% Similarity=0.164 Sum_probs=19.2
Q ss_pred HHHHHHhHHHHHHhhccccccc
Q 002678 52 IKKLQRYRDQIKTWIQSSEIKD 73 (893)
Q Consensus 52 IKKLQR~RDQIKtW~~s~eIKD 73 (893)
|..-+++|.|||+|..+.|.-+
T Consensus 152 ~~e~~~l~~ql~s~~~~GD~~~ 173 (504)
T KOG0624|consen 152 IQEHWVLVQQLKSASGSGDCQN 173 (504)
T ss_pred HHHHHHHHHHHHHHhcCCchhh
Confidence 6678999999999999988764
No 89
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=79.81 E-value=21 Score=32.84 Aligned_cols=103 Identities=16% Similarity=0.219 Sum_probs=63.7
Q ss_pred chhhhHHHHhhhHHHhHHHHHHHHHHhhcCCCc--hhHHHHHHHHHHHHHHHHHhHHHHHHhhccccccccccch---hh
Q 002678 6 KLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNA--NQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSA---SY 80 (893)
Q Consensus 6 KLQ~EIDr~lKKV~EGve~Fd~i~eK~~~a~n~--nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~eIKDK~~~~---~~ 80 (893)
.+-.+|...+.+|+.-|..++..+.++..+... .-|++++.....=-+.-+..+..||.--..++...+.++. .-
T Consensus 8 ~~v~~I~~~I~~i~~~v~~l~~l~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~lk~l~~~~~~~~~~~~~~~r~~ 87 (117)
T smart00503 8 EKVEEIRANIQKISQNVAELQKLHEELLTPPDADKELREKLERLIDDIKRLAKEIRAKLKELEKENLENRASGSASDRTR 87 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhcccCCHhhhHH
Confidence 345789999999999999999999999887663 3477777644433333344555555433222211000000 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 002678 81 EQALVDARKLIEREMERFKICEKETKTK 108 (893)
Q Consensus 81 ~~~L~e~RKlIE~~MErFK~vEKesKtK 108 (893)
.....-.++..-..|.+|..+++..+.+
T Consensus 88 ~~q~~~L~~~f~~~m~~fq~~Q~~~~~~ 115 (117)
T smart00503 88 KAQTEKLRKKFKEVMNEFQRLQRKYRER 115 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1233445666678899999999987754
No 90
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=79.81 E-value=8.8 Score=40.13 Aligned_cols=83 Identities=25% Similarity=0.374 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhc--ccCC--CCchhHHHHHHHHHHHHHHHHHHHHHH-Hhhh---CCCCChhh---
Q 002678 133 DWLNNLVSELESQIDSFEAELEGLTV--KKGK--TRPPRLTHLETSITRHKAHIMKLELIL-RLLD---NDELSPEQ--- 201 (893)
Q Consensus 133 ~wL~~~IdeL~~QiE~~EaEiE~Ls~--KK~K--~~~~r~~~le~~ierhk~Hi~kLE~lL-RlLd---N~~l~pe~--- 201 (893)
..|..+++.....++.++.+++.+.. .+.. ..-.++-.++..+-+.+..+..+..++ +++. ...++.+.
T Consensus 114 ~il~~~~~~~~~~l~~l~~~l~~le~~~~~~~~~~~~~~l~~l~~~l~~l~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~ 193 (292)
T PF01544_consen 114 AILDEIVDDYFEVLEELEDELDELEDELDDRPSNELLRELFDLRRELSRLRRSLSPLREVLQRLLRRDDSPFISDEDKEY 193 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHTTTHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSTTSHCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhhhhhhhHHHH
Confidence 34444444444444444444444422 1221 224688889988888888888887777 8888 44455554
Q ss_pred hhhhhhHHHHHHHh
Q 002678 202 VNDVKDLLEDYVER 215 (893)
Q Consensus 202 V~~IKddieyYve~ 215 (893)
+.++.++++...+.
T Consensus 194 ~~~~~~~~~~~~~~ 207 (292)
T PF01544_consen 194 LRDLLDRIERLLER 207 (292)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 67777777776653
No 91
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=79.71 E-value=38 Score=36.43 Aligned_cols=184 Identities=16% Similarity=0.209 Sum_probs=84.9
Q ss_pred chhhhHHHHhhhHHHhHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHH-hHHHHHHhhccccccccccchhhHHHH
Q 002678 6 KLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQR-YRDQIKTWIQSSEIKDKKVSASYEQAL 84 (893)
Q Consensus 6 KLQ~EIDr~lKKV~EGve~Fd~i~eK~~~a~n~nQKEKlE~DLKKEIKKLQR-~RDQIKtW~~s~eIKDK~~~~~~~~~L 84 (893)
+|.+|++.+.+|+..-..--+.+......+-+.. .+|...|++|++ ..+-|+.|..-+.--+......+...|
T Consensus 56 ~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a------~~L~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~l~~~l 129 (264)
T PF06008_consen 56 SLEQDVENLQEKATKVSRKAQQLNNNTERTLQRA------QDLEQFIQNLQDNIQELIEQVESLNENGDQLPSEDLQRAL 129 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHH
Confidence 4555666666666555555554444433322111 245555555543 344455554444411112223344455
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCCCchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCC
Q 002678 85 VDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTR 164 (893)
Q Consensus 85 ~e~RKlIE~~MErFK~vEKesKtKafSkEGL~~~~k~DP~ekek~E~~~wL~~~IdeL~~QiE~~EaEiE~Ls~KK~K~~ 164 (893)
.|.+++++ +|+.+.|...=-. .+.|+.+|..-|..+-..+....+..+.=.+.+.. +-..-
T Consensus 130 ~ea~~mL~-----------emr~r~f~~~~~~-------Ae~El~~A~~LL~~v~~~~~~~~~~~~~l~~~i~~-~L~~~ 190 (264)
T PF06008_consen 130 AEAQRMLE-----------EMRKRDFTPQRQN-------AEDELKEAEDLLSRVQKWFQKPQQENESLAEAIRD-DLNDY 190 (264)
T ss_pred HHHHHHHH-----------HHHhccchhHHHH-------HHHHHHHHHHHHHHHHHHHhhHHHhhHHHHHHHHH-HHHHH
Confidence 55555443 3444555544332 36666666666666555554444444333333211 00111
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhhhCCCC----ChhhhhhhhhHHHHHHH
Q 002678 165 PPRLTHLETSITRHKAHIMKLELILRLLDNDEL----SPEQVNDVKDLLEDYVE 214 (893)
Q Consensus 165 ~~r~~~le~~ierhk~Hi~kLE~lLRlLdN~~l----~pe~V~~IKddieyYve 214 (893)
..++.+|+.++++=.-++..=+.+.+...+.-- -.+.|.+.+..+..+|.
T Consensus 191 ~~kL~Dl~~~l~eA~~~~~ea~~ln~~n~~~l~~~~~k~~~l~~~~~~~~~~L~ 244 (264)
T PF06008_consen 191 NAKLQDLRDLLNEAQNKTREAEDLNRANQKNLEDLEKKKQELSEQQNEVSETLK 244 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 245566666665555555444444443333211 13455555555555555
No 92
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=79.69 E-value=44 Score=44.25 Aligned_cols=103 Identities=17% Similarity=0.259 Sum_probs=66.8
Q ss_pred HhhhHHHhHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhHHHHHHhhccccccccccchhhHHHHHHHHHHHHH
Q 002678 14 VLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIER 93 (893)
Q Consensus 14 ~lKKV~EGve~Fd~i~eK~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~eIKDK~~~~~~~~~L~e~RKlIE~ 93 (893)
.+..+.|+++.++.+-+++ .+|+++|+.|.+++.....|..--.-... ..+...+..++.
T Consensus 221 ~i~~l~e~~~~~~~~~~~l-------------e~l~~~~~~l~~i~~~y~~y~~~~~~~~~-------~~~~~~~~~~~~ 280 (1353)
T TIGR02680 221 ELTDVADALEQLDEYRDEL-------------ERLEALERALRNFLQRYRRYARTMLRRRA-------TRLRSAQTQYDQ 280 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
Confidence 3778888888888876665 47899999999999988888764322222 256666667777
Q ss_pred HHHHHHHHHhhhccccccccccCCCCCCCchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002678 94 EMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGL 156 (893)
Q Consensus 94 ~MErFK~vEKesKtKafSkEGL~~~~k~DP~ekek~E~~~wL~~~IdeL~~QiE~~EaEiE~L 156 (893)
.++.-..++.+... ..+...=+..-+++|+.+++.++.+++.|
T Consensus 281 ~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~le~~~~~l~~~~~~l 323 (1353)
T TIGR02680 281 LSRDLGRARDELET--------------------AREEERELDARTEALEREADALRTRLEAL 323 (1353)
T ss_pred HHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66665555544321 12222334455666777777777777766
No 93
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=79.48 E-value=1.3e+02 Score=36.36 Aligned_cols=60 Identities=18% Similarity=0.393 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHhHHHHHHhhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccc
Q 002678 47 DLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGL 115 (893)
Q Consensus 47 DLKKEIKKLQR~RDQIKtW~~s~eIKDK~~~~~~~~~L~e~RKlIE~~MErFK~vEKesKtKafSkEGL 115 (893)
++-++|+.|+.-.++...-+.+-++++-. ..+.+--..|+. -|-.+|||.+.|.|...-+
T Consensus 253 ~i~~~i~~l~~~i~~~~~~l~~l~l~~~~------~~~~~i~~~Id~---Lyd~lekE~~A~~~vek~~ 312 (569)
T PRK04778 253 DIEKEIQDLKEQIDENLALLEELDLDEAE------EKNEEIQERIDQ---LYDILEREVKARKYVEKNS 312 (569)
T ss_pred ChHHHHHHHHHHHHHHHHHHHhcChHHHH------HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhh
Confidence 35555665555555555555555655422 233333333333 2445777777777764443
No 94
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=79.36 E-value=53 Score=41.09 Aligned_cols=32 Identities=28% Similarity=0.459 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHhhhhcccCCC----CchhHHHHHHHHH
Q 002678 141 ELESQIDSFEAELEGLTVKKGKT----RPPRLTHLETSIT 176 (893)
Q Consensus 141 eL~~QiE~~EaEiE~Ls~KK~K~----~~~r~~~le~~ie 176 (893)
+|+..+|.|..|++. -+++ ...+|+.|+..|.
T Consensus 670 ~LK~k~E~Lk~Evak----a~~~pd~~~k~kieal~~qik 705 (762)
T PLN03229 670 DLKSKIELLKLEVAK----ASKTPDVTEKEKIEALEQQIK 705 (762)
T ss_pred hHHHHHHHHHHHHHh----cCCCCCcchHHHHHHHHHHHH
Confidence 466667777777633 2332 1256777766664
No 95
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=79.08 E-value=26 Score=42.03 Aligned_cols=126 Identities=22% Similarity=0.304 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccccccccccCC--CCCCCchHHhHHHHHHHH--------HHHHHHHHHHHHHHHHHHh
Q 002678 85 VDARKLIEREMERFKICEKETKTKAFSKEGLGQ--QPKTDPKEKAKSETRDWL--------NNLVSELESQIDSFEAELE 154 (893)
Q Consensus 85 ~e~RKlIE~~MErFK~vEKesKtKafSkEGL~~--~~k~DP~ekek~E~~~wL--------~~~IdeL~~QiE~~EaEiE 154 (893)
.++|..|+.-.++|+.|-|.-=.+.|+=-.-.. ..+++--+..-.+..+|. .+++..|+..+..++..+|
T Consensus 132 ~~nr~~i~~l~~~y~~lrk~ll~~~~~~G~a~~~Le~~L~~ie~~F~~f~~lt~~GD~~~A~eil~~l~~~~~~l~~~~e 211 (560)
T PF06160_consen 132 EKNREEIEELKEKYRELRKELLAHSFSYGPAIEELEKQLENIEEEFSEFEELTENGDYLEAREILEKLKEETDELEEIME 211 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999999998888777776322110 011111222222233332 2356677777777777777
Q ss_pred hhhc--ccCCCC-chhHHHHHHHHH---HH-------------HHHHHHHHHHHHhhhCCCCC--hhhhhhhhhHHH
Q 002678 155 GLTV--KKGKTR-PPRLTHLETSIT---RH-------------KAHIMKLELILRLLDNDELS--PEQVNDVKDLLE 210 (893)
Q Consensus 155 ~Ls~--KK~K~~-~~r~~~le~~ie---rh-------------k~Hi~kLE~lLRlLdN~~l~--pe~V~~IKddie 210 (893)
.+.. ++-++. +..+++|+.-.. +. +-=-.+|+.++.+|++.+|+ -+.+++|.+.|+
T Consensus 212 ~IP~l~~~l~~~~P~ql~eL~~gy~~m~~~gy~l~~~~i~~~i~~i~~~l~~~~~~L~~l~l~~~~~~~~~i~~~Id 288 (560)
T PF06160_consen 212 DIPKLYKELQKEFPDQLEELKEGYREMEEEGYYLEHLDIEEEIEQIEEQLEEALALLKNLELDEVEEENEEIEERID 288 (560)
T ss_pred HhHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 6632 222222 334444443221 11 11224566667777777665 334444555554
No 96
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=79.06 E-value=38 Score=42.31 Aligned_cols=16 Identities=25% Similarity=0.634 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHhHHH
Q 002678 46 ADLKKEIKKLQRYRDQ 61 (893)
Q Consensus 46 ~DLKKEIKKLQR~RDQ 61 (893)
..|+++.+|++|+++.
T Consensus 196 ~~L~~q~~~a~~~~~~ 211 (1179)
T TIGR02168 196 NELERQLKSLERQAEK 211 (1179)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4566666777666543
No 97
>COG1293 Predicted RNA-binding protein homologous to eukaryotic snRNP [Transcription]
Probab=78.97 E-value=18 Score=43.42 Aligned_cols=80 Identities=19% Similarity=0.319 Sum_probs=49.0
Q ss_pred HHHHHHHHhhcCCCchh-HHHHHHHHHHHHHHHHHhHHHHHHhhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 002678 24 VFDSIWNKVYDTDNANQ-KEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICE 102 (893)
Q Consensus 24 ~Fd~i~eK~~~a~n~nQ-KEKlE~DLKKEIKKLQR~RDQIKtW~~s~eIKDK~~~~~~~~~L~e~RKlIE~~MErFK~vE 102 (893)
.|++.|+.......-.| ..+++..|.+|++||++..+..+.=+...+-++.. --.+...|..+..+||..|..+....
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~kl~~~i~~~~~~~~~~~~~~~~-~r~~g~ll~an~~~i~~~~~~v~~~~ 344 (564)
T COG1293 266 LFNEALDEKFERDKIKQLASELEKKLEKELKKLENKLEKQEDELEELEKAAEE-LRQKGELLYANLQLIEEGLKSVRLAD 344 (564)
T ss_pred HHHHHHHHHhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhhhhhhehhh
Confidence 59999999888777665 33477777777777766655555444444333300 12344577777777777776655444
Q ss_pred hh
Q 002678 103 KE 104 (893)
Q Consensus 103 Ke 104 (893)
..
T Consensus 345 ~~ 346 (564)
T COG1293 345 FY 346 (564)
T ss_pred hc
Confidence 33
No 98
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=78.95 E-value=25 Score=36.69 Aligned_cols=65 Identities=17% Similarity=0.278 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccCCCCchhHHHHHHHHHHH----HHHHHHHHHHHHhhhC-CCCChhhhh
Q 002678 135 LNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRH----KAHIMKLELILRLLDN-DELSPEQVN 203 (893)
Q Consensus 135 L~~~IdeL~~QiE~~EaEiE~Ls~KK~K~~~~r~~~le~~ierh----k~Hi~kLE~lLRlLdN-~~l~pe~V~ 203 (893)
+-.-+++|+.+++.++.|++.+ ++..++++++++..+.+- +..-.+++.|..-+.+ -.++.++|+
T Consensus 108 ~l~~l~~l~~~~~~l~~el~~~----~~~Dp~~i~~~~~~~~~~~~~anrwTDNI~~l~~~~~~k~~~~~~~i~ 177 (188)
T PF03962_consen 108 LLEELEELKKELKELKKELEKY----SENDPEKIEKLKEEIKIAKEAANRWTDNIFSLKSYLKKKFGMDEEDIR 177 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HhcCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcCCCHHHHH
Confidence 4466788889999999998854 334556666666544332 3334445555555544 335555555
No 99
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=78.94 E-value=23 Score=34.57 Aligned_cols=32 Identities=31% Similarity=0.437 Sum_probs=28.4
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002678 125 EKAKSETRDWLNNLVSELESQIDSFEAELEGL 156 (893)
Q Consensus 125 ekek~E~~~wL~~~IdeL~~QiE~~EaEiE~L 156 (893)
|+...|+.++|..-++.|+.+++.++.+++.+
T Consensus 89 E~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~ 120 (140)
T PRK03947 89 EKDLDEAIEILDKRKEELEKALEKLEEALQKL 120 (140)
T ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778999999999999999999999998776
No 100
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.11 E-value=82 Score=35.47 Aligned_cols=183 Identities=20% Similarity=0.253 Sum_probs=95.5
Q ss_pred hHHHHhhhHHHhHHHHHHHHHHhhcCCCchh--HHHHHHHHHHHHHHHHHhHHHHHHhhcccccccc-----ccchhhHH
Q 002678 10 EIDRVLKKVQEGVDVFDSIWNKVYDTDNANQ--KEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDK-----KVSASYEQ 82 (893)
Q Consensus 10 EIDr~lKKV~EGve~Fd~i~eK~~~a~n~nQ--KEKlE~DLKKEIKKLQR~RDQIKtW~~s~eIKDK-----~~~~~~~~ 82 (893)
||...++++.+-++.-+..+.++..+.++-+ |.+||++...=+++--..|-.||.--..++--.+ .+......
T Consensus 44 ~Ir~~i~~l~~~~~~l~~~hs~~l~~~~~~~~~k~~l~~~~~~~~~~a~~Ik~kL~~~e~~~~~~~~~~~~~~~~r~rrt 123 (297)
T KOG0810|consen 44 EIRDDIEKLDEDVEKLQKLHSKSLHSPNADKELKRKLESLVDEIRRRARKIKTKLKALEKENEADETQNRSSAGLRTRRT 123 (297)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCccchhHHH
Confidence 5556666666666666666666666666666 8889887766555555566666665544432221 11222223
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCCCchHHhHHHHHHHHHHHHHHHHH-H--HHHHHHHHhhhhc-
Q 002678 83 ALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELES-Q--IDSFEAELEGLTV- 158 (893)
Q Consensus 83 ~L~e~RKlIE~~MErFK~vEKesKtKafSkEGL~~~~k~DP~ekek~E~~~wL~~~IdeL~~-Q--iE~~EaEiE~Ls~- 158 (893)
...-..|..+..|..|-.+....|. ++.+.+......-.. + =|.+|.-+|.-..
T Consensus 124 q~~~~~kkf~~~M~~f~~~~~~~r~----------------------~~k~~i~Rql~i~~~~~~~de~ie~~ie~g~~~ 181 (297)
T KOG0810|consen 124 QTSALSKKLKELMNEFNRTQSKYRE----------------------EYKERIQRQLFIVGGEETTDEEIEEMIESGGSE 181 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHhhhCCCcCChHHHHHHHHCCChH
Confidence 4445557788888888766544432 222222222211111 0 0112222222100
Q ss_pred ---cc-CCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCC----hhhhhhhhhHHHHHHHh
Q 002678 159 ---KK-GKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELS----PEQVNDVKDLLEDYVER 215 (893)
Q Consensus 159 ---KK-~K~~~~r~~~le~~ierhk~Hi~kLE~lLRlLdN~~l~----pe~V~~IKddieyYve~ 215 (893)
.| ........+-|.+.-+||.. |.+||.-||-|.-=-+| ++.=.+.-|+||+-|++
T Consensus 182 ~f~~~~i~~~~~~~~~l~Eiq~Rh~~-ik~LEksi~ELhqlFlDMa~LVe~QgEmvd~IE~nV~~ 245 (297)
T KOG0810|consen 182 VFTQKAIQDRGQAKQTLAEIQERHDE-IKKLEKSIRELHQLFLDMAVLVESQGEMVDRIENNVEN 245 (297)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 00 00112334567777778864 88899888877655555 22223455666666663
No 101
>PF01496 V_ATPase_I: V-type ATPase 116kDa subunit family ; InterPro: IPR002490 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents the 116kDa subunit (or subunit a) and subunit I found in the V0 or A0 complex of V- or A-ATPases, respectively. The 116kDa subunit is a transmembrane glycoprotein required for the assembly and proton transport activity of the ATPase complex. Several isoforms of the 116kDa subunit exist, providing a potential role in the differential targeting and regulation of the V-ATPase for specific organelles []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 2RPW_X 2NVJ_A 2JTW_A 3RRK_A.
Probab=78.00 E-value=8.4 Score=47.31 Aligned_cols=53 Identities=19% Similarity=0.351 Sum_probs=0.0
Q ss_pred hhhHHHhHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHh-HHHHHHhhccc
Q 002678 15 LKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRY-RDQIKTWIQSS 69 (893)
Q Consensus 15 lKKV~EGve~Fd~i~eK~~~a~n~nQKEKlE~DLKKEIKKLQR~-RDQIKtW~~s~ 69 (893)
++++.+-+..+++.++++... -++.+.....|++++.+|+.. +++++.|..-+
T Consensus 76 l~~le~~l~e~~~~~e~L~~~--~~~L~E~~~~L~~~~~~l~~~~~~~l~~~~~l~ 129 (759)
T PF01496_consen 76 LEELEEELRELNENLEKLEEE--LNELEEEKNVLEEEIEFLEELKLEELEPWKNLD 129 (759)
T ss_dssp --------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcc
Confidence 334444444455555555432 233344555688888888888 78888888654
No 102
>cd07675 F-BAR_FNBP1L The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 1-Like. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FormiN Binding Protein 1-Like (FNBP1L), also known as Toca-1 (Transducer of Cdc42-dependent actin assembly), forms a complex with neural Wiskott-Aldrich syndrome protein (N-WASP). The FNBP1L/N-WASP complex induces the formation of filopodia and endocytic vesicles. FNBP1L is required for Cdc42-induced actin assembly and is essential for autophagy of intracellular pathogens. It contains an N-terminal F-BAR domain, a central Cdc42-binding HR1 domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=77.57 E-value=1.2e+02 Score=33.54 Aligned_cols=79 Identities=15% Similarity=0.214 Sum_probs=49.7
Q ss_pred hhhHHHHhhhHHHhHHHHHHHHHHhh--------------------------cCC-------------------CchhHH
Q 002678 8 QGEIDRVLKKVQEGVDVFDSIWNKVY--------------------------DTD-------------------NANQKE 42 (893)
Q Consensus 8 Q~EIDr~lKKV~EGve~Fd~i~eK~~--------------------------~a~-------------------n~nQKE 42 (893)
---+|.++|.|+.||+.+++|..=+. ... -+.|+|
T Consensus 4 ~Dqf~~~~k~~~~Gi~~l~~~~~F~keRa~IE~eYakkL~~L~Kky~~KK~~~~e~p~~t~~~s~~~~L~~~~~~a~q~e 83 (252)
T cd07675 4 WDQFDNLDKHTQWGIDFLERYAKFVKERLEIEQNYAKQLRNLVKKYCPKRSSKDEEPRFTSCLSFYNILNELNDYAGQRE 83 (252)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccccHHHHHHHHHHHHHHHHHHHH
Confidence 34568888999999998887654221 001 156788
Q ss_pred HHHHHHHHHH-----HHHHHhHHHHHHhhccccccccccchhhHHHHHHHHHHHHHHHHHH
Q 002678 43 KFEADLKKEI-----KKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERF 98 (893)
Q Consensus 43 KlE~DLKKEI-----KKLQR~RDQIKtW~~s~eIKDK~~~~~~~~~L~e~RKlIE~~MErF 98 (893)
.+..+|..+| +..++||.++|.++... .+|...+.....+||+-
T Consensus 84 ~~a~~l~~~v~~~l~~~~~~l~~~rk~~~~~~------------~klqk~l~~~~~~leks 132 (252)
T cd07675 84 VVAEEMGHRVYGELMRYSHDLKGERKMHLQEG------------RKAQQYLDMCWKQMDNS 132 (252)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHH
Confidence 8888885543 45588888888887221 14555555555555543
No 103
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=77.15 E-value=81 Score=39.53 Aligned_cols=26 Identities=19% Similarity=0.291 Sum_probs=12.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002678 167 RLTHLETSITRHKAHIMKLELILRLL 192 (893)
Q Consensus 167 r~~~le~~ierhk~Hi~kLE~lLRlL 192 (893)
++.+++..++..+-.+..|+.-++-+
T Consensus 434 ~~~~~~~~~~~~~~~~~~l~~~~~~~ 459 (1179)
T TIGR02168 434 ELKELQAELEELEEELEELQEELERL 459 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555544444444444444433
No 104
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=76.92 E-value=13 Score=45.84 Aligned_cols=49 Identities=24% Similarity=0.441 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHhHHHHHHhhccc---cccccccchhhHHHHHH---HHHHHHHHH
Q 002678 47 DLKKEIKKLQRYRDQIKTWIQSS---EIKDKKVSASYEQALVD---ARKLIEREM 95 (893)
Q Consensus 47 DLKKEIKKLQR~RDQIKtW~~s~---eIKDK~~~~~~~~~L~e---~RKlIE~~M 95 (893)
-||-||.-||+--||+.+=+++= ==+||...+.+|.+|.| +|..+|.+.
T Consensus 457 ~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL 511 (697)
T PF09726_consen 457 SLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEERRQRASLEKQL 511 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555544433221 11255544555555544 344455433
No 105
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=76.49 E-value=63 Score=38.13 Aligned_cols=18 Identities=22% Similarity=0.100 Sum_probs=12.7
Q ss_pred ccchhhhHHHHhhhHHHh
Q 002678 4 SRKLQGEIDRVLKKVQEG 21 (893)
Q Consensus 4 ~RKLQ~EIDr~lKKV~EG 21 (893)
+||.-+|+-|+|++-.--
T Consensus 72 kcki~qeenr~l~~Asv~ 89 (552)
T KOG2129|consen 72 KCKIMQEENRPLLLASVE 89 (552)
T ss_pred HHHHHHhcCchhhhhhhH
Confidence 467778888888875433
No 106
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=76.33 E-value=1e+02 Score=37.55 Aligned_cols=9 Identities=33% Similarity=0.464 Sum_probs=5.8
Q ss_pred HHHHHHHHH
Q 002678 179 KAHIMKLEL 187 (893)
Q Consensus 179 k~Hi~kLE~ 187 (893)
..|..+||.
T Consensus 326 eLh~aRLe~ 334 (546)
T PF07888_consen 326 ELHQARLEA 334 (546)
T ss_pred HHHHhhhhH
Confidence 467777753
No 107
>PF15272 BBP1_C: Spindle pole body component BBP1, C-terminal
Probab=76.16 E-value=13 Score=39.44 Aligned_cols=44 Identities=23% Similarity=0.374 Sum_probs=30.8
Q ss_pred HHhhhHHHhHHHHHHHHHHhhcCCCchhHHHHH---HHHHHHHHHHHHhHH
Q 002678 13 RVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFE---ADLKKEIKKLQRYRD 60 (893)
Q Consensus 13 r~lKKV~EGve~Fd~i~eK~~~a~n~nQKEKlE---~DLKKEIKKLQR~RD 60 (893)
|.|..++++|..-++.++..+ ++=|+||. .+|.+|+|+-+++-|
T Consensus 19 r~L~~L~~dl~~~~~~~~~~e----~~~~~KY~~lR~ElI~ELkqsKklyd 65 (196)
T PF15272_consen 19 RALSDLNQDLRERDERYELQE----TSYKEKYQQLRQELINELKQSKKLYD 65 (196)
T ss_pred HHHHHHHHHHHHhhhHHHhhh----hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457777788877777766664 44577765 488888888776654
No 108
>COG1283 NptA Na+/phosphate symporter [Inorganic ion transport and metabolism]
Probab=75.60 E-value=35 Score=41.09 Aligned_cols=174 Identities=17% Similarity=0.200 Sum_probs=91.4
Q ss_pred hhhHHHHhhhHHHhHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhHHHHHHhhccc---cccccccchhhHHHH
Q 002678 8 QGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSS---EIKDKKVSASYEQAL 84 (893)
Q Consensus 8 Q~EIDr~lKKV~EGve~Fd~i~eK~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~---eIKDK~~~~~~~~~L 84 (893)
..|+=++-+.|.-.++-+.+++++ ..|...++.|.=.+.-|+-++||..+..= ..-++. .---..+
T Consensus 337 ~rEvl~~~d~ie~ml~~~~~~~~~---------~~~~~~~i~~~e~~vd~~~~~Ik~YL~~ls~~~Lse~e--s~r~~~i 405 (533)
T COG1283 337 AREVLRLGDSIEQMLERLYEYIEG---------DAKKVKEIRKLEDAVDRLYEEIKLYLARLSKEGLSEEE--SRRWAEI 405 (533)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc---------chHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHH--HHHHHHH
Confidence 356667777776666665555552 45777778888888888888888887542 222221 0011255
Q ss_pred HHHHHHHHH---HHHHHHHHHhhhccccccccccCCCCCCCchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccC
Q 002678 85 VDARKLIER---EMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKG 161 (893)
Q Consensus 85 ~e~RKlIE~---~MErFK~vEKesKtKafSkEGL~~~~k~DP~ekek~E~~~wL~~~IdeL~~QiE~~EaEiE~Ls~KK~ 161 (893)
.++=+-||+ =+|+ -||.-.|...++. .-.|....|......-+++.++.-+..+...-..+. ++.
T Consensus 406 id~a~~lE~IgDiie~--l~~~~~kk~~~~~---------~fse~~~~el~~l~~~~~~n~~~a~~~l~~~D~~~a-r~l 473 (533)
T COG1283 406 IDAAINLEHIGDIIER--LLELADKKIANGR---------AFSEDGLEELDALFALTLENLRLAISVLVTGDLELA-RRL 473 (533)
T ss_pred HHHHHhHHHHHHHHHH--HHHHHHHHHhcCC---------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHH-HHH
Confidence 555555555 3455 4444444332221 112444555566666666666665555543322111 011
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhhhhhh
Q 002678 162 KTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVK 206 (893)
Q Consensus 162 K~~~~r~~~le~~ierhk~Hi~kLE~lLRlLdN~~l~pe~V~~IK 206 (893)
-.+.+++.++|+ +-+|.|++||..--.-++-+.+=-|-|.++|
T Consensus 474 v~~k~~~r~~e~--~~~k~H~~Rl~~g~~s~~t~~l~lDii~dlk 516 (533)
T COG1283 474 VERKKRVRRLER--RSSKRHLDRLRDGAASVETSSLHLDILRDLK 516 (533)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHcCcchhhhchhHHHHHHHHH
Confidence 011122333332 2357888888777666776665444444443
No 109
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=75.47 E-value=17 Score=44.36 Aligned_cols=95 Identities=24% Similarity=0.248 Sum_probs=62.4
Q ss_pred chHHhHHHHHHHHH---HHHHHHHHHHHHHHHHHhhhh-cccCCCCchhHHHHHHHHHHHHH-HHHHHHHHHHhhhCCCC
Q 002678 123 PKEKAKSETRDWLN---NLVSELESQIDSFEAELEGLT-VKKGKTRPPRLTHLETSITRHKA-HIMKLELILRLLDNDEL 197 (893)
Q Consensus 123 P~ekek~E~~~wL~---~~IdeL~~QiE~~EaEiE~Ls-~KK~K~~~~r~~~le~~ierhk~-Hi~kLE~lLRlLdN~~l 197 (893)
..||++.|+.+=+. +.|++++ |+---|-+-|.|+ .+|+|.....+..|++..+.-+. -..-|+.+.+.|.-+..
T Consensus 192 alEkeq~e~E~K~R~se~l~qevn-~~kv~e~~~erlqye~klkstk~e~a~L~Eq~~eK~~e~~rl~~~lv~~~~~d~e 270 (861)
T KOG1899|consen 192 ALEKEQNETEKKLRLSENLMQEVN-QSKVGEVVQERLQYETKLKSTKGEMAPLREQRSEKNDEEMRLLRTLVQRLMADGE 270 (861)
T ss_pred HHHHHhhhHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHhhcccccchhhhHHHHHhhhhhHHHHHHHHHHHHHhhccc
Confidence 35677777665554 4566666 5555566666775 47777666667777777743333 33445666665555444
Q ss_pred -ChhhhhhhhhHHHHHHHhCCC
Q 002678 198 -SPEQVNDVKDLLEDYVERNQD 218 (893)
Q Consensus 198 -~pe~V~~IKddieyYve~nqd 218 (893)
-.++++.+|-.+|--+..|.+
T Consensus 271 ~~~~rd~~lk~a~eslm~ane~ 292 (861)
T KOG1899|consen 271 HKSLRDNTLKNALESLMRANEQ 292 (861)
T ss_pred chhhHHHHHHHHHHHHHhhchh
Confidence 478888999999999998865
No 110
>PF13514 AAA_27: AAA domain
Probab=75.01 E-value=83 Score=40.67 Aligned_cols=60 Identities=13% Similarity=0.368 Sum_probs=37.0
Q ss_pred cchhhhHHHHhh------hHHHhHHHHHHHHHHhhcCCCch-hHHHHHHHHHHHHHHHHHhHHHHHH
Q 002678 5 RKLQGEIDRVLK------KVQEGVDVFDSIWNKVYDTDNAN-QKEKFEADLKKEIKKLQRYRDQIKT 64 (893)
Q Consensus 5 RKLQ~EIDr~lK------KV~EGve~Fd~i~eK~~~a~n~n-QKEKlE~DLKKEIKKLQR~RDQIKt 64 (893)
.+|.+|.|++|| .|+..+..|+++-.++....... +=..+...+..--.+++++|.+++.
T Consensus 133 ~~L~~ea~~Lfkprg~~~~in~~l~~l~e~~~~l~~~~~~~~~y~~l~~~~~~~~~~~~~l~~~~~~ 199 (1111)
T PF13514_consen 133 KQLDKEADELFKPRGRKPEINQALKELKELERELREAEVRAAEYQELQQALEEAEEELEELRAELKE 199 (1111)
T ss_pred HHHHHHHHHhhCCCCCChHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578888899887 58888888888888887665433 3333333333333444444444443
No 111
>PF04740 LXG: LXG domain of WXG superfamily; InterPro: IPR006829 This group of putative transposases is found in Gram-positive bacteria, mostly Bacillus members and is thought to be a Cytosolic protein. However, we have also found a Bacillus subtilis bacteriophage SPbetac2 homologue (O64023 from SWISSPROT), possibly arising as a result of horizontal transfer. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=74.92 E-value=39 Score=34.51 Aligned_cols=38 Identities=26% Similarity=0.387 Sum_probs=34.7
Q ss_pred chhHHHHHHHHHHHHHHHHHhHHHHHHhhcccc-ccccc
Q 002678 38 ANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSE-IKDKK 75 (893)
Q Consensus 38 ~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~e-IKDK~ 75 (893)
.+|.+++..-++..+..|+-++..|...+..++ .|+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~l~~l~~ai~~~~~~~~~LkGka 47 (204)
T PF04740_consen 9 HSQAESTNSSLKELKEQLESLQKAINQFISSESSLKGKA 47 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhhHH
Confidence 467888889999999999999999999999999 99988
No 112
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=74.91 E-value=1.1e+02 Score=36.80 Aligned_cols=85 Identities=19% Similarity=0.364 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHhHHHHHHhhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCCCchHH
Q 002678 47 DLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEK 126 (893)
Q Consensus 47 DLKKEIKKLQR~RDQIKtW~~s~eIKDK~~~~~~~~~L~e~RKlIE~~MErFK~vEKesKtKafSkEGL~~~~k~DP~ek 126 (893)
++.++|+.|+..+++.+.-+..-++++=. ..+.+--..|+. =|-.+|||.+.|.|=++.+
T Consensus 249 ~i~~~i~~i~~~l~~~~~~L~~l~l~~~~------~~~~~i~~~Id~---lYd~le~E~~Ak~~V~~~~----------- 308 (560)
T PF06160_consen 249 DIEEEIEQIEEQLEEALALLKNLELDEVE------EENEEIEERIDQ---LYDILEKEVEAKKYVEKNL----------- 308 (560)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCHHHHH------HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhH-----------
Confidence 57778888888888888888777776422 234444444443 2345788877766544333
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002678 127 AKSETRDWLNNLVSELESQIDSFEAELEGLT 157 (893)
Q Consensus 127 ek~E~~~wL~~~IdeL~~QiE~~EaEiE~Ls 157 (893)
.-|.+.|+.++.+...+..|++.++
T Consensus 309 ------~~l~~~l~~~~~~~~~l~~e~~~v~ 333 (560)
T PF06160_consen 309 ------KELYEYLEHAKEQNKELKEELERVS 333 (560)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2345566666667777777776663
No 113
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=74.91 E-value=32 Score=33.66 Aligned_cols=61 Identities=20% Similarity=0.321 Sum_probs=41.0
Q ss_pred cchhhhHHHHhhhHHHhHHHHHHHHHHhhc---CCCchhHHHHHHHHHHHHHHHHHhHHHHHHh
Q 002678 5 RKLQGEIDRVLKKVQEGVDVFDSIWNKVYD---TDNANQKEKFEADLKKEIKKLQRYRDQIKTW 65 (893)
Q Consensus 5 RKLQ~EIDr~lKKV~EGve~Fd~i~eK~~~---a~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW 65 (893)
.+|+.+.++.-++++.=-..|+..++++.. .-+..++++++.+|.+....||+++.++..=
T Consensus 39 ~~l~~~~~~~~~~l~~~~~el~~~~~~l~~~~~~ls~~~~~~~~~~l~~~~~~l~~~~~~~~~~ 102 (158)
T PF03938_consen 39 AKLQEKFKALQKELQAKQKELQKLQQKLQSQKATLSEEERQKRQQELQQKEQELQQFQQQAQQQ 102 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS----SSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555566666666665 4467788999999999999999888887743
No 114
>PF06730 FAM92: FAM92 protein; InterPro: IPR009602 This family consists of several eukaryotic sequences of around 270 residues in length. Members of this family are found in mouse, human and Drosophila melanogaster. The function of this family is unknown.
Probab=74.30 E-value=1e+02 Score=33.51 Aligned_cols=47 Identities=23% Similarity=0.278 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCchhHHHHHHHHH-----HHHHHHHHHHHHHHh
Q 002678 131 TRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSIT-----RHKAHIMKLELILRL 191 (893)
Q Consensus 131 ~~~wL~~~IdeL~~QiE~~EaEiE~Ls~KK~K~~~~r~~~le~~ie-----rhk~Hi~kLE~lLRl 191 (893)
+..=...+.-.|+++|+.||.. ||.+|+..+. -..||-.-||.+=..
T Consensus 154 as~~~~rt~~~Lee~i~~FEkq--------------Kl~DlK~i~sdFv~iEM~fHaKALEv~T~a 205 (219)
T PF06730_consen 154 ASVDATRTTKQLEETIDNFEKQ--------------KLKDLKKIFSDFVTIEMVFHAKALEVYTAA 205 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334456778899999999876 5666776653 468999999987653
No 115
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=74.24 E-value=27 Score=42.67 Aligned_cols=74 Identities=22% Similarity=0.381 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHHHh-------hhhcccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhh----h
Q 002678 135 LNNLVSELESQIDSFEAELE-------GLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELSPEQV----N 203 (893)
Q Consensus 135 L~~~IdeL~~QiE~~EaEiE-------~Ls~KK~K~~~~r~~~le~~ierhk~Hi~kLE~lLRlLdN~~l~pe~V----~ 203 (893)
|+.-+..|++.+|.++.+++ .|+. ..+....||.+|+..++|.+--..-...||--|.||++..... .
T Consensus 85 Lq~E~~~L~kElE~L~~qlqaqv~~ne~Ls~-L~~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SRAlsQN~ 163 (617)
T PF15070_consen 85 LQAEAEHLRKELESLEEQLQAQVENNEQLSR-LNQEQEERLAELEEELERLQEQQEDRQKLLEQLQSDKATASRALSQNR 163 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHhHH
Confidence 44445555555555555443 3322 1223357899999999888777777778888889999874432 3
Q ss_pred hhhhHH
Q 002678 204 DVKDLL 209 (893)
Q Consensus 204 ~IKddi 209 (893)
++|+.|
T Consensus 164 eLK~QL 169 (617)
T PF15070_consen 164 ELKEQL 169 (617)
T ss_pred HHHHHH
Confidence 455544
No 116
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=74.21 E-value=68 Score=39.00 Aligned_cols=42 Identities=19% Similarity=0.254 Sum_probs=23.3
Q ss_pred hhhhHHHHhhhHHHhHHHHHHHHHHhhcCCCchhHHHHHHHH
Q 002678 7 LQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADL 48 (893)
Q Consensus 7 LQ~EIDr~lKKV~EGve~Fd~i~eK~~~a~n~nQKEKlE~DL 48 (893)
.+.++..+++++.+=-+..+.|-+|+..+....+-++|+..|
T Consensus 389 ~~~~~~~~~~~~~~~e~el~~l~~~l~~~~~~e~i~~l~e~l 430 (650)
T TIGR03185 389 LQDAKSQLLKELRELEEELAEVDKKISTIPSEEQIAQLLEEL 430 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 345566666666666666666666666555544444444333
No 117
>PRK05287 hypothetical protein; Provisional
Probab=73.93 E-value=27 Score=38.28 Aligned_cols=120 Identities=20% Similarity=0.295 Sum_probs=70.6
Q ss_pred HHHHHH-HHHHHHhHHHHHHhhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCCCch
Q 002678 46 ADLKKE-IKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPK 124 (893)
Q Consensus 46 ~DLKKE-IKKLQR~RDQIKtW~~s~eIKDK~~~~~~~~~L~e~RKlIE~~MErFK~vEKesKtKafSkEGL~~~~k~DP~ 124 (893)
+|||-| ||.|.|.|-.++.|..+.+|-.. .|......|+...+.-..+. |-|-..
T Consensus 57 ~DlKsdLlKeLerq~~~L~~~~~~p~vd~~--------~l~~~l~~l~~~~~~L~~~~---------r~Gq~L------- 112 (250)
T PRK05287 57 GDLKSDLLKELERQRQKLQKWRGNPGVDQE--------ALEALLQELEQASAALNAAP---------RIGQSL------- 112 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcCHH--------HHHHHHHHHHHHHHHHHhcc---------cccchh-------
Confidence 588886 58899999999999999998643 57777777777665532211 111111
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhC
Q 002678 125 EKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDN 194 (893)
Q Consensus 125 ekek~E~~~wL~~~IdeL~~QiE~~EaEiE~Ls~KK~K~~~~r~~~le~~ierhk~Hi~kLE~lLRlLdN 194 (893)
.--+||..+=.-+.--=-..+-++=.+..=..+....|..+++.|++-..-=.+-|.++||+|..
T Consensus 113 -----rede~L~siRQR~~iPGG~C~FDLP~yh~Wl~~p~~~R~~dl~~W~~~l~pl~~al~l~L~LlR~ 177 (250)
T PRK05287 113 -----REDRFLSSIRQRLSIPGGCCSFDLPALHAWLHLPQEQRQQDLQQWLAPLAPLRDALTLVLRLLRE 177 (250)
T ss_pred -----hhhHHHHHHHHHhcCCCcccCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 11235543311111111112222222211122223458888999998888888899999999843
No 118
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=73.80 E-value=10 Score=46.90 Aligned_cols=138 Identities=20% Similarity=0.293 Sum_probs=91.4
Q ss_pred HHHHHHHhHHHHHHhhcccc-cc-ccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhccc-cccccccCCCCCCCchHHh
Q 002678 51 EIKKLQRYRDQIKTWIQSSE-IK-DKKVSASYEQALVDARKLIEREMERFKICEKETKTK-AFSKEGLGQQPKTDPKEKA 127 (893)
Q Consensus 51 EIKKLQR~RDQIKtW~~s~e-IK-DK~~~~~~~~~L~e~RKlIE~~MErFK~vEKesKtK-afSkEGL~~~~k~DP~eke 127 (893)
...|+||+-.-+..++..-= +. |-.- .-.-..+...|--||+.+-.|-.-|..-+.. .++||||.+-.|+-|.--
T Consensus 807 DvQK~QRlh~~FsqFvg~HLavAF~~dP-E~~~~~~~~~Rnei~R~l~~~~~~~QQ~R~Q~d~aKe~~~~LnkLiPql~- 884 (1480)
T COG3096 807 DVQKTQRLHQAFSRFIGSHLAVAFEADP-EAEIRQLNSRRNELERALSNHENDNQQQRIQFDQAKEGVTALNRLIPQLN- 884 (1480)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhhhhhc-
Confidence 36789999999888876531 10 1100 0011256778889999999998888776653 467788776555555211
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhhhhhhh
Q 002678 128 KSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKD 207 (893)
Q Consensus 128 k~E~~~wL~~~IdeL~~QiE~~EaEiE~Ls~KK~K~~~~r~~~le~~ierhk~Hi~kLE~lLRlLdN~~l~pe~V~~IKd 207 (893)
.=+.+-|.+-|++++.+++.. ++.+.+|..|--.+.+||-|.-.|+. ||++.+.+|+
T Consensus 885 -ll~dE~L~dRveE~~E~L~~a-------------------~e~~~fI~qhG~tls~LEpia~~Lqs---DPe~~e~L~~ 941 (1480)
T COG3096 885 -LLADESLADRVEEIRERLDEA-------------------QEAARFIQQHGNTLSKLEPIASVLQS---DPEQFEQLKE 941 (1480)
T ss_pred -cccchhHHHHHHHHHHHHHHH-------------------HHHHHHHHHhcchHHhhhhHHHHHhC---CHHHHHHHHH
Confidence 011223444555555555443 34578999999999999999999986 6999999998
Q ss_pred HHHHHH
Q 002678 208 LLEDYV 213 (893)
Q Consensus 208 dieyYv 213 (893)
+..--.
T Consensus 942 ~y~qA~ 947 (1480)
T COG3096 942 DYAQAQ 947 (1480)
T ss_pred HHHHHH
Confidence 765444
No 119
>KOG2685 consensus Cystoskeletal protein Tektin [Cytoskeleton]
Probab=73.47 E-value=1.2e+02 Score=35.68 Aligned_cols=79 Identities=22% Similarity=0.336 Sum_probs=55.4
Q ss_pred hhHHHHhhhHHHhHHHHHHHHHHhhcCCC----------------------chhHHHHHHHHHHHHHHHHHhHHHHHHhh
Q 002678 9 GEIDRVLKKVQEGVDVFDSIWNKVYDTDN----------------------ANQKEKFEADLKKEIKKLQRYRDQIKTWI 66 (893)
Q Consensus 9 ~EIDr~lKKV~EGve~Fd~i~eK~~~a~n----------------------~nQKEKlE~DLKKEIKKLQR~RDQIKtW~ 66 (893)
.|||+.|++|.+-++.....+.+++.+-+ .=-++--|.+|.||.-=+...+.++|.-+
T Consensus 87 ~el~~ele~l~~E~~~L~~~k~rle~~L~~~~~P~~ia~eCL~~RekR~~~dlv~D~Ve~EL~kE~eli~~~q~ll~~~~ 166 (421)
T KOG2685|consen 87 GELDRELEDLAAEIDDLLHEKRRLERALNALALPLSIAEECLAHREKRQGIDLVHDEVETELHKEVELIENIQELLKKTL 166 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHhhcccchhhccccHHHHHhHHHHHHHHHHHHHHHH
Confidence 69999999999999999998888773221 11255578899999988888888887655
Q ss_pred ccccccccccchhhHHHHHHHHHHHHHHH
Q 002678 67 QSSEIKDKKVSASYEQALVDARKLIEREM 95 (893)
Q Consensus 67 ~s~eIKDK~~~~~~~~~L~e~RKlIE~~M 95 (893)
.--+.+= ..+.++|+.+|...
T Consensus 167 ~~a~~Ql--------~~nr~ar~~Le~Dl 187 (421)
T KOG2685|consen 167 ERAEEQL--------RLNREARQNLERDL 187 (421)
T ss_pred HHHHHHH--------HHhHHHHHHHhhhh
Confidence 4332221 14566677776644
No 120
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=73.36 E-value=1.9e+02 Score=35.49 Aligned_cols=41 Identities=12% Similarity=0.290 Sum_probs=27.5
Q ss_pred HHhhhHHHhHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhHHH
Q 002678 13 RVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQ 61 (893)
Q Consensus 13 r~lKKV~EGve~Fd~i~eK~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQ 61 (893)
.+|.-....+++|.+-|-+. .+|.-.++.+-|+-|||..||
T Consensus 559 E~~~lL~~a~~vfrEqYi~~--------~dlV~~e~qrH~~~l~~~k~~ 599 (741)
T KOG4460|consen 559 ECLQLLSRATQVFREQYILK--------QDLVKEEIQRHVKLLCDQKKK 599 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHH
Confidence 35555667788888877766 345666677777777765544
No 121
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=73.31 E-value=12 Score=45.22 Aligned_cols=127 Identities=20% Similarity=0.317 Sum_probs=42.9
Q ss_pred ccchhhhHHHHhhhHHH--------hHHHHHHHHHHhhcCCCchhH----------HHHHHHHHHHHHHHHHhHHHHHHh
Q 002678 4 SRKLQGEIDRVLKKVQE--------GVDVFDSIWNKVYDTDNANQK----------EKFEADLKKEIKKLQRYRDQIKTW 65 (893)
Q Consensus 4 ~RKLQ~EIDr~lKKV~E--------Gve~Fd~i~eK~~~a~n~nQK----------EKlE~DLKKEIKKLQR~RDQIKtW 65 (893)
-..|+.|++||-..-.+ -....+++|++++-+....+. |-+=..+..||++|..+.++-|.-
T Consensus 266 i~~l~~El~RL~~lK~~~lk~~I~~~R~ei~elWd~~~~s~eer~~F~~~~~d~~~E~lL~~hE~Ei~~Lk~~~~~~k~I 345 (619)
T PF03999_consen 266 IEALEEELERLEELKKQNLKEFIEKKRQEIEELWDKCHYSEEERQAFTPFYIDSYTEELLELHEEEIERLKEEYESRKPI 345 (619)
T ss_dssp ---------------------------------------------------------------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678888887554433 344557889998754332211 233344678888888777665532
Q ss_pred hccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhccc-cccccccCCCCCCCchHHhHHHHHHHHHHHHHHHHH
Q 002678 66 IQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTK-AFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELES 144 (893)
Q Consensus 66 ~~s~eIKDK~~~~~~~~~L~e~RKlIE~~MErFK~vEKesKtK-afSkEGL~~~~k~DP~ekek~E~~~wL~~~IdeL~~ 144 (893)
+ .|++.|+ .-.+.+..+|..+|=. -|.+-| ..+=-+||.|..+..=|=.++++|..
T Consensus 346 l----------------~~v~k~~---~l~~~~~~Le~~~~D~~Rl~~RG----g~LLkEEk~rk~i~k~lPkle~~L~~ 402 (619)
T PF03999_consen 346 L----------------ELVEKWE---SLWEEMEELEESSKDPSRLNNRG----GHLLKEEKERKRIQKKLPKLEEELKK 402 (619)
T ss_dssp H----------------HHHHHHH---HHHHHHHHHHHHHH-CCGG----------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred H----------------HHHHHHH---HHHHHHHHHHHHhcChhhhcccc----cHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 2 2333333 3333444455544322 244434 11222567777788889999999999
Q ss_pred HHHHHHHHH
Q 002678 145 QIDSFEAEL 153 (893)
Q Consensus 145 QiE~~EaEi 153 (893)
.|+.+|.|-
T Consensus 403 ~l~~wE~e~ 411 (619)
T PF03999_consen 403 KLEEWEEEH 411 (619)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHc
Confidence 999999884
No 122
>PRK09039 hypothetical protein; Validated
Probab=73.28 E-value=47 Score=37.67 Aligned_cols=70 Identities=13% Similarity=0.144 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhhhhhhhHH
Q 002678 137 NLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLL 209 (893)
Q Consensus 137 ~~IdeL~~QiE~~EaEiE~Ls~KK~K~~~~r~~~le~~ierhk~Hi~kLE~lLRlLdN~~l~pe~V~~IKddi 209 (893)
..+.+.+.+|+.+..||+.|...-.. =+..|+.++....-.+-.|..|+.-|+.+-.. ...++..+|.++
T Consensus 130 ~~~se~~~~V~~L~~qI~aLr~Qla~-le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~--~~~~l~~~~~~~ 199 (343)
T PRK09039 130 QVSARALAQVELLNQQIAALRRQLAA-LEAALDASEKRDRESQAKIADLGRRLNVALAQ--RVQELNRYRSEF 199 (343)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhHHHH
Confidence 34444444444444444444111000 02334444444434444444444444332211 244555666666
No 123
>cd07619 BAR_Rich2 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. RhoGAP interacting with CIP4 homologs protein 2 (Rich2) is a Rho GTPase activating protein that interacts with CD317, a lipid raft-associated integral membrane protein. It plays a role in actin cytoskeleton organization and the maintenance of microvilli in polarized epithelial cells. Rich2 contains an N-terminal BAR domain followed by a GAP domain for Rho and Rac GTPases and a C-terminal proline-rich domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=73.16 E-value=95 Score=34.21 Aligned_cols=18 Identities=11% Similarity=0.139 Sum_probs=11.4
Q ss_pred hHHHHhhhHHHhHHHHHH
Q 002678 10 EIDRVLKKVQEGVDVFDS 27 (893)
Q Consensus 10 EIDr~lKKV~EGve~Fd~ 27 (893)
..=.+.|||.+....||.
T Consensus 85 ~~gea~~kla~a~~~~d~ 102 (248)
T cd07619 85 LCGETEDKLAQELILFEL 102 (248)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344556777777777765
No 124
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=73.10 E-value=30 Score=41.85 Aligned_cols=29 Identities=21% Similarity=0.462 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHhHHHHHHhhcccccccc
Q 002678 46 ADLKKEIKKLQRYRDQIKTWIQSSEIKDK 74 (893)
Q Consensus 46 ~DLKKEIKKLQR~RDQIKtW~~s~eIKDK 74 (893)
..++.+|-.|+++|+-.|.|-++.++++-
T Consensus 355 d~~~~~~~~~~~~~~sl~~~~~~E~~~~d 383 (607)
T KOG0240|consen 355 DKNVALKEELEKLRNSLKRWRNGEEVKED 383 (607)
T ss_pred hHHHHHHHHHHHHHHHHhhhcccCcccch
Confidence 34677888999999999999999998853
No 125
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=72.52 E-value=14 Score=35.27 Aligned_cols=32 Identities=31% Similarity=0.521 Sum_probs=29.1
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002678 125 EKAKSETRDWLNNLVSELESQIDSFEAELEGL 156 (893)
Q Consensus 125 ekek~E~~~wL~~~IdeL~~QiE~~EaEiE~L 156 (893)
|+...||.++|.+-|+.|+.+++.++.++..+
T Consensus 81 E~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~l 112 (126)
T TIGR00293 81 EKDAEEAIEFLKKRIEELEKAIEKLQEALAEL 112 (126)
T ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47889999999999999999999999998776
No 126
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=72.48 E-value=1.6e+02 Score=37.26 Aligned_cols=21 Identities=33% Similarity=0.570 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHhhhhcc
Q 002678 139 VSELESQIDSFEAELEGLTVK 159 (893)
Q Consensus 139 IdeL~~QiE~~EaEiE~Ls~K 159 (893)
+..+..+++.+..+++.+..+
T Consensus 690 ~~~~~~el~~~~~~l~~~~~~ 710 (908)
T COG0419 690 LEQLEEELEQLREELEELLKK 710 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666665555433
No 127
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=72.29 E-value=53 Score=35.95 Aligned_cols=48 Identities=15% Similarity=0.335 Sum_probs=22.4
Q ss_pred chhhhHHHHhhhHHHhHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhHHHH
Q 002678 6 KLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQI 62 (893)
Q Consensus 6 KLQ~EIDr~lKKV~EGve~Fd~i~eK~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQI 62 (893)
|++.|++++.|++.+--..|+++ .+|.-.+|.||.+.=+|+-|.|+++
T Consensus 35 k~~~e~e~~~~~~~~~~~e~e~l---------e~qv~~~e~ei~~~r~r~~~~e~kl 82 (239)
T COG1579 35 KAKAELEALNKALEALEIELEDL---------ENQVSQLESEIQEIRERIKRAEEKL 82 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444333 2334455555555555555555554
No 128
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=71.98 E-value=28 Score=43.59 Aligned_cols=113 Identities=24% Similarity=0.304 Sum_probs=67.0
Q ss_pred chhHHHHHHHHHHHHHHHHHhHHHH-------HHhhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Q 002678 38 ANQKEKFEADLKKEIKKLQRYRDQI-------KTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAF 110 (893)
Q Consensus 38 ~nQKEKlE~DLKKEIKKLQR~RDQI-------KtW~~s~eIKDK~~~~~~~~~L~e~RKlIE~~MErFK~vEKesKtKaf 110 (893)
-+|||-+--.|++|+.-|+.-|-+- ...+.-.-.|=++-.|-....|+|+|+..|-==+.--++||+--
T Consensus 286 lSqkeelVk~~qeeLd~lkqt~t~a~gdseqatkylh~enmkltrqkadirc~LlEarrk~egfddk~~eLEKkrd---- 361 (1265)
T KOG0976|consen 286 LSQKEELVKELQEELDTLKQTRTRADGDSEQATKYLHLENMKLTRQKADIRCALLEARRKAEGFDDKLNELEKKRD---- 361 (1265)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHH----
Confidence 5688888888999988888777442 22332222333334566777888888888877777777777542
Q ss_pred cccccCCCCCCCchHHhH--HHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 002678 111 SKEGLGQQPKTDPKEKAK--SETRDWLNNLVSELESQIDSFEAELEGLTV 158 (893)
Q Consensus 111 SkEGL~~~~k~DP~ekek--~E~~~wL~~~IdeL~~QiE~~EaEiE~Ls~ 158 (893)
..|+..-++ .++.+ .+-.+-|.....+++.|||.+..-|-++..
T Consensus 362 --~al~dvr~i--~e~k~nve~elqsL~~l~aerqeQidelKn~if~~e~ 407 (1265)
T KOG0976|consen 362 --MALMDVRSI--QEKKENVEEELQSLLELQAERQEQIDELKNHIFRLEQ 407 (1265)
T ss_pred --HHHHhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 223321111 11111 112334455566778888888777766644
No 129
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=71.84 E-value=65 Score=32.31 Aligned_cols=24 Identities=38% Similarity=0.491 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccc
Q 002678 137 NLVSELESQIDSFEAELEGLTVKK 160 (893)
Q Consensus 137 ~~IdeL~~QiE~~EaEiE~Ls~KK 160 (893)
+=|++|+..|+.|+++++.|..||
T Consensus 109 ~dv~~L~~rId~L~~~v~~l~~~k 132 (132)
T PF05597_consen 109 KDVEALSARIDQLTAQVERLANKK 132 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCC
Confidence 447888888888888888886554
No 130
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=71.62 E-value=1.3e+02 Score=39.07 Aligned_cols=61 Identities=16% Similarity=0.259 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHhHHHHHHhhcccccc----cc----ccchhhHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 002678 46 ADLKKEIKKLQRYRDQIKTWIQSSEIK----DK----KVSASYEQALVDARKLIEREMERFKICEKETK 106 (893)
Q Consensus 46 ~DLKKEIKKLQR~RDQIKtW~~s~eIK----DK----~~~~~~~~~L~e~RKlIE~~MErFK~vEKesK 106 (893)
.|||-++-=.+|=+++.++-+..++-. |- ...--.++.+.+-++++-..|+..+.+|+-||
T Consensus 711 ~~l~~ql~l~~~~l~l~~~r~~~~e~~~~~~~~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~ 779 (1174)
T KOG0933|consen 711 RDLKQQLELKLHELALLEKRLEQNEFHKLLDDLKELLEEVEESEQQIKEKERALKKCEDKISTLEKKMK 779 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 366667766677777776666655321 00 00011223455555555566666666676665
No 131
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=70.57 E-value=40 Score=43.24 Aligned_cols=75 Identities=16% Similarity=0.283 Sum_probs=44.6
Q ss_pred HHHhhhHHHhHH-HHHHHHHHhhcCCCchh-----HHHHHHHHHHHHHHHHHhHHHHHHhhccccccccccchhhHHHHH
Q 002678 12 DRVLKKVQEGVD-VFDSIWNKVYDTDNANQ-----KEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALV 85 (893)
Q Consensus 12 Dr~lKKV~EGve-~Fd~i~eK~~~a~n~nQ-----KEKlE~DLKKEIKKLQR~RDQIKtW~~s~eIKDK~~~~~~~~~L~ 85 (893)
-+.|+-+.|+-. .|++.|.|+..-.+.++ -|-||..+-...|-|+.++|--|..+--.+ +|+
T Consensus 382 rrlt~tleelqsss~Ee~~SK~leleke~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~e------------kl~ 449 (1195)
T KOG4643|consen 382 RRLTGTLEELQSSSYEELISKHLELEKEHKNLSKKHEILEERINQLLQQLAELEDLEKKLQFELE------------KLL 449 (1195)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHH
Confidence 355566666543 68888888876666554 355666666666666667766665443222 455
Q ss_pred HHHHHHHHHHHHH
Q 002678 86 DARKLIEREMERF 98 (893)
Q Consensus 86 e~RKlIE~~MErF 98 (893)
+.-+-.+.-|++.
T Consensus 450 ~e~~t~~~s~~rq 462 (1195)
T KOG4643|consen 450 EETSTVTRSLSRQ 462 (1195)
T ss_pred HHHHHHHHhHHHH
Confidence 5444555555555
No 132
>KOG2117 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.36 E-value=14 Score=42.47 Aligned_cols=91 Identities=24% Similarity=0.438 Sum_probs=58.3
Q ss_pred CccccchhhhHHHHhhhHHH---hHHHHHHHHHHhhcCCCch-----------------------hHHHHHHHHHHHHHH
Q 002678 1 MGASRKLQGEIDRVLKKVQE---GVDVFDSIWNKVYDTDNAN-----------------------QKEKFEADLKKEIKK 54 (893)
Q Consensus 1 Maa~RKLQ~EIDr~lKKV~E---Gve~Fd~i~eK~~~a~n~n-----------------------QKEKlE~DLKKEIKK 54 (893)
||+.-+.|..+++--+|--+ .|=.||++|+-|+...+.. -|-|+|-.|.-| +|
T Consensus 44 ~ask~~~~k~ae~qhqKAlaEDptif~YDe~YDdmq~kk~e~~~~~~~~~~r~kPkYi~nLie~aerRkkE~e~r~E-Rk 122 (379)
T KOG2117|consen 44 QASKTKSQKTAERQHQKALAEDPTIFGYDEVYDDMQSKKREQLPRLRLREKRRKPKYIENLIEAAERRKKEQELRYE-RK 122 (379)
T ss_pred cchHHHHHHHHHHHHHHhhhcCCchhccchhhHHHHHHHhhhhHhhhhhccccccHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 45555666677666655433 4667899999996443321 233344433333 56
Q ss_pred HHHhHHHHHHhhccccccccc--cchhhHHHHHHHHHHHHHHHHH
Q 002678 55 LQRYRDQIKTWIQSSEIKDKK--VSASYEQALVDARKLIEREMER 97 (893)
Q Consensus 55 LQR~RDQIKtW~~s~eIKDK~--~~~~~~~~L~e~RKlIE~~MEr 97 (893)
|||=|+- -..+..||. |-.+|-.+|.|-++-+|++=++
T Consensus 123 l~KeREk-----Eg~~fdDkekfVTgAYKKklEE~~k~~e~Ek~~ 162 (379)
T KOG2117|consen 123 LLKEREK-----EGDEFDDKEKFVTGAYKKKLEEVKKWLEQEKEE 162 (379)
T ss_pred HHHHHHh-----hccccccchhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 7777763 345455555 8889999999999999986544
No 133
>cd07655 F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce
Probab=69.92 E-value=24 Score=38.07 Aligned_cols=41 Identities=7% Similarity=0.315 Sum_probs=22.2
Q ss_pred HHhhhHHHhHH--HHHHHHHHhhcCCC--chhHHHHHHHHHHHHH
Q 002678 13 RVLKKVQEGVD--VFDSIWNKVYDTDN--ANQKEKFEADLKKEIK 53 (893)
Q Consensus 13 r~lKKV~EGve--~Fd~i~eK~~~a~n--~nQKEKlE~DLKKEIK 53 (893)
+.++++.+|.+ .|...|+.+..... +++++.|-..|..+|.
T Consensus 48 k~~~~~~~~~e~gsl~~aw~~~~~e~e~~a~~H~~l~~~L~~~v~ 92 (258)
T cd07655 48 KWRDLIEKGPEYGTLETAWKGLLSEAERLSELHLSIRDKLLNDVV 92 (258)
T ss_pred HHhhhhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344544433 46667777664432 4566666666665554
No 134
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=69.62 E-value=1.2e+02 Score=35.48 Aligned_cols=21 Identities=24% Similarity=0.281 Sum_probs=19.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 002678 166 PRLTHLETSITRHKAHIMKLE 186 (893)
Q Consensus 166 ~r~~~le~~ierhk~Hi~kLE 186 (893)
+|.-+|.+.||..+-||.|||
T Consensus 298 eRaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 298 ERARDIWEVMESCQTRISKLE 318 (395)
T ss_pred HHHhHHHHHHHHHHHHHHHHH
Confidence 577889999999999999999
No 135
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=69.57 E-value=26 Score=41.63 Aligned_cols=62 Identities=18% Similarity=0.213 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCCCchHHhHHHHHHHHHHHHHHHHHHHH
Q 002678 84 LVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQID 147 (893)
Q Consensus 84 L~e~RKlIE~~MErFK~vEKesKtKafSkEGL~~~~k~DP~ekek~E~~~wL~~~IdeL~~QiE 147 (893)
|.|.-|.+-..--.|-..++.||.|.=+--|++. ++.-.=.+|+|-.+-|+.-+|+|+.|++
T Consensus 300 l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~--kl~~eie~kEeei~~L~~~~d~L~~q~~ 361 (622)
T COG5185 300 LREKWRALKSDSNKYENYVNAMKQKSQEWPGKLE--KLKSEIELKEEEIKALQSNIDELHKQLR 361 (622)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHH--HHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 4444444444555677778888888777777664 3333345777888899999999998854
No 136
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=69.52 E-value=2.1e+02 Score=32.74 Aligned_cols=68 Identities=21% Similarity=0.331 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhc-c----------cC-------------CCCchhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002678 137 NLVSELESQIDSFEAELEGLTV-K----------KG-------------KTRPPRLTHLETSITRHKAHIMKLELILRLL 192 (893)
Q Consensus 137 ~~IdeL~~QiE~~EaEiE~Ls~-K----------K~-------------K~~~~r~~~le~~ierhk~Hi~kLE~lLRlL 192 (893)
..++.++.|++.+|.|+-.+-- | |. .....||.+++..|.-+||--.+|..+-
T Consensus 133 ~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~ENRyL~erl~q~q--- 209 (319)
T PF09789_consen 133 EQLEKLREQIEQLERDLQSLLDEKEELVTERDAYKCKAHRLNHELNYILNGDENRIVDIDALIMENRYLKERLKQLQ--- 209 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHH---
Confidence 4458888888888888866510 0 11 1112366667777766666666665543
Q ss_pred hCCCCChhhhhhhhhHHHHHHH
Q 002678 193 DNDELSPEQVNDVKDLLEDYVE 214 (893)
Q Consensus 193 dN~~l~pe~V~~IKddieyYve 214 (893)
++++.+|--|..|-.
T Consensus 210 -------eE~~l~k~~i~KYK~ 224 (319)
T PF09789_consen 210 -------EEKELLKQTINKYKS 224 (319)
T ss_pred -------HHHHHHHHHHHHHHH
Confidence 556666666666653
No 137
>cd07671 F-BAR_PSTPIP1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 1. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 1 (PSTPIP1), also known as CD2 Binding Protein 1 (CD2BP1), is mainly expressed in hematopoietic cells. It is a binding partner of the cell surface receptor CD2 and PTP-PEST, a tyrosine phosphatase which functions in cell motility and Rac1 regulation. It also plays a role in the activation of the Wiskott-Aldrich syndrome protein (WASP), which couples actin rearrangement and T cell activation. Mutations in the gene encoding PSTPIP1 cause the autoinflammatory disorder known as PAPA (pyogenic sterile arthritis, pyoderma gangrenosum, and acne) syndrome. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain. F-BAR
Probab=68.96 E-value=63 Score=35.00 Aligned_cols=27 Identities=26% Similarity=0.523 Sum_probs=17.5
Q ss_pred chhHHHHHHHHHHHHHHHHHhHHHHHH
Q 002678 38 ANQKEKFEADLKKEIKKLQRYRDQIKT 64 (893)
Q Consensus 38 ~nQKEKlE~DLKKEIKKLQR~RDQIKt 64 (893)
+++...+-..|+.+|++|.+||+-.|.
T Consensus 73 a~~H~~ia~~L~~~~~~l~~f~~~qke 99 (242)
T cd07671 73 GNSHIQLAGMLREELKSLEEFRERQKE 99 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556667777777777777766654443
No 138
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=68.68 E-value=79 Score=28.93 Aligned_cols=32 Identities=13% Similarity=0.241 Sum_probs=16.1
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002678 125 EKAKSETRDWLNNLVSELESQIDSFEAELEGL 156 (893)
Q Consensus 125 ekek~E~~~wL~~~IdeL~~QiE~~EaEiE~L 156 (893)
+..+.++...+..++..|+..=+.+=.+++..
T Consensus 38 ~~~~~~I~~~f~~l~~~L~~~e~~ll~~l~~~ 69 (127)
T smart00502 38 ADVEAQIKAAFDELRNALNKRKKQLLEDLEEQ 69 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555544444444443
No 139
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=68.32 E-value=60 Score=40.34 Aligned_cols=50 Identities=30% Similarity=0.328 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHH-------HHhHHHHHHhhccccccccccchhhHHHHHHHHHHHHHHHHHH
Q 002678 41 KEKFEADLKKEIKKL-------QRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERF 98 (893)
Q Consensus 41 KEKlE~DLKKEIKKL-------QR~RDQIKtW~~s~eIKDK~~~~~~~~~L~e~RKlIE~~MErF 98 (893)
..|||+|+||==--| |.||.||..-.+ +|---|. -|...|+..|+-..++
T Consensus 420 ~~rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~-~Er~lk~-------eL~qlr~ene~Lq~Kl 476 (697)
T PF09726_consen 420 ISRLEADVKKLRAELQSSRQSEQELRSQISSLTN-NERSLKS-------ELSQLRQENEQLQNKL 476 (697)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccc-cchHHHH-------HHHHHHHHHHHHHHHH
Confidence 457777766522222 567888876555 3333333 6666676666544443
No 140
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=68.24 E-value=71 Score=41.86 Aligned_cols=62 Identities=10% Similarity=0.142 Sum_probs=44.0
Q ss_pred chhhhHHHHhhhHHHhHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhHHHHHHhhccc
Q 002678 6 KLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSS 69 (893)
Q Consensus 6 KLQ~EIDr~lKKV~EGve~Fd~i~eK~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~ 69 (893)
--+.|.+++++.|.|-...=.++++|-+.+--.. +..-+.+.+-++.|+.|-.||+.++...
T Consensus 1426 ~~~ae~eq~~~~v~ea~~~aseA~~~Aq~~~~~a--~as~~q~~~s~~el~~Li~~v~~Flt~~ 1487 (1758)
T KOG0994|consen 1426 SKLAEAEQTLSMVREAKLSASEAQQSAQRALEQA--NASRSQMEESNRELRNLIQQVRDFLTQP 1487 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3457899999999999998888888876543211 1222334456778888888999988765
No 141
>PRK04863 mukB cell division protein MukB; Provisional
Probab=67.98 E-value=1.9e+02 Score=39.12 Aligned_cols=17 Identities=18% Similarity=0.421 Sum_probs=10.3
Q ss_pred hhhhhhhhhHHHHHHHh
Q 002678 199 PEQVNDVKDLLEDYVER 215 (893)
Q Consensus 199 pe~V~~IKddieyYve~ 215 (893)
++.++.+.++.+.-+|+
T Consensus 553 ~~~~~~~~~~~~~~~~~ 569 (1486)
T PRK04863 553 EDELEQLQEELEARLES 569 (1486)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66666666655555543
No 142
>COG1283 NptA Na+/phosphate symporter [Inorganic ion transport and metabolism]
Probab=67.69 E-value=1.2e+02 Score=36.92 Aligned_cols=43 Identities=16% Similarity=0.193 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhCCCCC-hhhhhhhhhHHHHH
Q 002678 170 HLETSITRHKAHIMKLELILRLLDNDELS-PEQVNDVKDLLEDY 212 (893)
Q Consensus 170 ~le~~ierhk~Hi~kLE~lLRlLdN~~l~-pe~V~~IKddieyY 212 (893)
.+++..+-|+--.+++...++.+.+++.+ ..++.+-|+++..+
T Consensus 440 ~~~el~~l~~~~~~n~~~a~~~l~~~D~~~ar~lv~~k~~~r~~ 483 (533)
T COG1283 440 GLEELDALFALTLENLRLAISVLVTGDLELARRLVERKKRVRRL 483 (533)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 34445566777788888899999888877 44455555555433
No 143
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=67.20 E-value=37 Score=41.98 Aligned_cols=129 Identities=15% Similarity=0.212 Sum_probs=74.5
Q ss_pred HHHHhHHHHHHhhcccccc-----------ccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCC--
Q 002678 54 KLQRYRDQIKTWIQSSEIK-----------DKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPK-- 120 (893)
Q Consensus 54 KLQR~RDQIKtW~~s~eIK-----------DK~~~~~~~~~L~e~RKlIE~~MErFK~vEKesKtKafSkEGL~~~~k-- 120 (893)
+|++-+|.|+.-+..+|.. || ...++++.+...||.||..--++..+.++.| +.-|.+.....+
T Consensus 556 el~~k~~Ev~~kl~ksEen~r~~e~e~~~k~k-q~k~lenk~~~LrKqvEnk~K~ieeLqqeNk--~LKKk~~aE~kq~~ 632 (786)
T PF05483_consen 556 ELKQKGEEVKCKLDKSEENARSIECEILKKEK-QMKILENKCNNLRKQVENKNKNIEELQQENK--ALKKKITAESKQSN 632 (786)
T ss_pred HHHHHHHHHHHHhhhHHHhhHHHHHHHhhhHH-HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 4455677777766665433 22 3567888999999999998888777777754 444444432111
Q ss_pred -----CCchHHhHHHHHHHHHHHHHHHHHH-------HHHHHHHHhhhhc-----ccCCCC-----chhHHHHHHHHHHH
Q 002678 121 -----TDPKEKAKSETRDWLNNLVSELESQ-------IDSFEAELEGLTV-----KKGKTR-----PPRLTHLETSITRH 178 (893)
Q Consensus 121 -----~DP~ekek~E~~~wL~~~IdeL~~Q-------iE~~EaEiE~Ls~-----KK~K~~-----~~r~~~le~~ierh 178 (893)
+.-.+.+-..+..-...+++.+.+. -+.|..|+|++.. -|.++. +.+|++.-+++++|
T Consensus 633 ~~eikVn~L~~E~e~~kk~~eE~~~~~~keie~K~~~e~~L~~EveK~k~~a~EAvK~q~EtdlrCQhKIAeMVALMEKH 712 (786)
T PF05483_consen 633 VYEIKVNKLQEELENLKKKHEEETDKYQKEIESKSISEEELLGEVEKAKLTADEAVKLQEETDLRCQHKIAEMVALMEKH 712 (786)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Confidence 1111222222222233333333333 3445555666521 122221 56899999999999
Q ss_pred HHHHHHH
Q 002678 179 KAHIMKL 185 (893)
Q Consensus 179 k~Hi~kL 185 (893)
+.|..|+
T Consensus 713 K~qYDki 719 (786)
T PF05483_consen 713 KHQYDKI 719 (786)
T ss_pred HHHHHHH
Confidence 9999886
No 144
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=67.09 E-value=67 Score=39.77 Aligned_cols=28 Identities=25% Similarity=0.254 Sum_probs=20.4
Q ss_pred ccCCCCchhHHHHHHHHHHHHHHHHHHH
Q 002678 159 KKGKTRPPRLTHLETSITRHKAHIMKLE 186 (893)
Q Consensus 159 KK~K~~~~r~~~le~~ierhk~Hi~kLE 186 (893)
+|+|....++++.+..+.||..-|.|+=
T Consensus 352 erkK~e~ke~ea~E~rkkr~~aei~Kff 379 (811)
T KOG4364|consen 352 ERKKLESKEVEAQELRKKRHEAEIGKFF 379 (811)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHhhh
Confidence 3444455678888888899988888764
No 145
>cd07671 F-BAR_PSTPIP1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 1. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 1 (PSTPIP1), also known as CD2 Binding Protein 1 (CD2BP1), is mainly expressed in hematopoietic cells. It is a binding partner of the cell surface receptor CD2 and PTP-PEST, a tyrosine phosphatase which functions in cell motility and Rac1 regulation. It also plays a role in the activation of the Wiskott-Aldrich syndrome protein (WASP), which couples actin rearrangement and T cell activation. Mutations in the gene encoding PSTPIP1 cause the autoinflammatory disorder known as PAPA (pyogenic sterile arthritis, pyoderma gangrenosum, and acne) syndrome. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain. F-BAR
Probab=66.92 E-value=55 Score=35.44 Aligned_cols=79 Identities=22% Similarity=0.140 Sum_probs=51.2
Q ss_pred cchhhhHHHHhhhHHHhHHHHHHHHHHhh----------cCCCchhHHHHHHHHHHHHHHHHHhHHHHHHhhcccccccc
Q 002678 5 RKLQGEIDRVLKKVQEGVDVFDSIWNKVY----------DTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDK 74 (893)
Q Consensus 5 RKLQ~EIDr~lKKV~EGve~Fd~i~eK~~----------~a~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~eIKDK 74 (893)
+|+|+=....+|+|..--..|+.-+.++. ...+..|.||+++-|+|...-+++.++.-+.-+
T Consensus 109 eK~qk~~~~~~k~l~ksKk~Ye~~Cke~~~a~q~~~k~~~~~t~keleK~~~K~~k~~~~~~~a~~~Y~~~v-------- 180 (242)
T cd07671 109 ERVQKSKVSLYKKTMESKKTYEQRCREADEAEQTFERSSSTGNPKQSEKSQNKAKQCRDAATEAERVYKQNI-------- 180 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Confidence 45555555667788888888886664443 334455677888777777777776665443222
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHH
Q 002678 75 KVSASYEQALVDARKLIEREMERF 98 (893)
Q Consensus 75 ~~~~~~~~~L~e~RKlIE~~MErF 98 (893)
..|.+.|-.-|+.|+.+
T Consensus 181 -------~~l~~~~~~w~~~~~~~ 197 (242)
T cd07671 181 -------EQLDKARTEWETEHILT 197 (242)
T ss_pred -------HHHHHHHHHHHHHHHHH
Confidence 24668888888888753
No 146
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=66.77 E-value=33 Score=35.09 Aligned_cols=16 Identities=31% Similarity=0.492 Sum_probs=11.9
Q ss_pred HHhHHHHHHHHHHHHH
Q 002678 125 EKAKSETRDWLNNLVS 140 (893)
Q Consensus 125 ekek~E~~~wL~~~Id 140 (893)
|..|-++..|+--+|-
T Consensus 148 E~~K~~~lr~~~g~i~ 163 (177)
T PF07798_consen 148 ESLKWDTLRWLVGVIF 163 (177)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5678888888876653
No 147
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=66.58 E-value=45 Score=35.20 Aligned_cols=31 Identities=13% Similarity=0.398 Sum_probs=21.7
Q ss_pred cchhhhHHHHhhhHHHhHHHHHHHHHHhhcC
Q 002678 5 RKLQGEIDRVLKKVQEGVDVFDSIWNKVYDT 35 (893)
Q Consensus 5 RKLQ~EIDr~lKKV~EGve~Fd~i~eK~~~a 35 (893)
.|||+++.+++++|..--..|+..+.....+
T Consensus 115 ~kl~~~~~~~~~~l~kskk~Y~~~~ke~~~a 145 (251)
T cd07653 115 SKLQQKLESSIKQLEKSKKAYEKAFKEAEKA 145 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777788877777777777776554433
No 148
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=66.20 E-value=26 Score=41.30 Aligned_cols=35 Identities=17% Similarity=0.228 Sum_probs=23.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccc
Q 002678 80 YEQALVDARKLIEREMERFKICEKETKTKAFSKEGL 115 (893)
Q Consensus 80 ~~~~L~e~RKlIE~~MErFK~vEKesKtKafSkEGL 115 (893)
+-.+|..+|+.+|+.|.++-. ++-.-.|+|-++-+
T Consensus 326 l~sqleSqr~y~e~~~~e~~q-sqlen~k~~~e~~~ 360 (493)
T KOG0804|consen 326 LTSQLESQRKYYEQIMSEYEQ-SQLENQKQYYELLI 360 (493)
T ss_pred hhhhhhHHHHHHHHHHHHHHH-HHHHhHHHHHHHHH
Confidence 445899999999999988655 33334555555544
No 149
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=66.07 E-value=54 Score=31.71 Aligned_cols=95 Identities=15% Similarity=0.198 Sum_probs=57.3
Q ss_pred hhhhHHHHhhhHHHhHHHHHHHHHHhhcCCC--chhHHHHHHHHHHHHHHHHHhHHHHHH---hhcc-------cccccc
Q 002678 7 LQGEIDRVLKKVQEGVDVFDSIWNKVYDTDN--ANQKEKFEADLKKEIKKLQRYRDQIKT---WIQS-------SEIKDK 74 (893)
Q Consensus 7 LQ~EIDr~lKKV~EGve~Fd~i~eK~~~a~n--~nQKEKlE~DLKKEIKKLQR~RDQIKt---W~~s-------~eIKDK 74 (893)
+=++|...+.+|+.-|..++..++++..+.. ..-|++|+.-...=-+.....+..||. +... .+.+-+
T Consensus 7 ~v~~I~~~i~~i~~~v~~l~~l~~~~~t~~~~~~~~~~~l~~~~~~~~~~~~~ik~~lk~l~~~~~~~~~~~~s~~~r~~ 86 (151)
T cd00179 7 EVEEIRGNIDKISEDVEELQKLHSQLLTAPDADPELKQELESLVQEIKKLAKEIKGKLKELEESNEQNEALNGSSVDRIR 86 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcHHHHHH
Confidence 4468999999999999999999999988876 234666665322111111222222222 2111 111111
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 002678 75 KVSASYEQALVDARKLIEREMERFKICEKETKT 107 (893)
Q Consensus 75 ~~~~~~~~~L~e~RKlIE~~MErFK~vEKesKt 107 (893)
+ ....-.++.+-..|.+|..++++.|.
T Consensus 87 ~------~q~~~L~~~f~~~m~~fq~~Q~~~~~ 113 (151)
T cd00179 87 K------TQHSGLSKKFVEVMTEFNKAQRKYRE 113 (151)
T ss_pred H------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 13444567778889999999988874
No 150
>PTZ00473 Plasmodium Vir superfamily; Provisional
Probab=65.95 E-value=2.4 Score=48.74 Aligned_cols=94 Identities=12% Similarity=0.103 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCC-CchHHhHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhhccc
Q 002678 83 ALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKT-DPKEKAKSETRDWLNNLVSELESQID-SFEAELEGLTVKK 160 (893)
Q Consensus 83 ~L~e~RKlIE~~MErFK~vEKesKtKafSkEGL~~~~k~-DP~ekek~E~~~wL~~~IdeL~~QiE-~~EaEiE~Ls~KK 160 (893)
.+++.-+.++.--|.++++|..||.=-|+.-.-.-.+.+ .+........|+|+++|||.-++=|+ ..... -+
T Consensus 119 ~il~~f~kfk~~~~~~~e~e~ImKL~yFteNig~Ik~lm~~~~~~~y~s~C~fvn~CidIYrk~i~~~Cs~~------~~ 192 (420)
T PTZ00473 119 NILKNFNKFKKLYENNYELEDIMKLFYFTENVGDIKSLMGAPDNEHYASSCKFVNDCLDIYRKYKDEKCSGN------SY 192 (420)
T ss_pred HhhhhHhhcccccccchhHHHHHHHHHHHhhhHHHHHHhcCCcchhHHHHHHHHHHHHHHHHHHHHhhcCCc------CC
Confidence 455556677777788888899998877764322211222 34455667899999999999888773 32221 12
Q ss_pred CCCC-chhHHHHHHHHHHHHHHH
Q 002678 161 GKTR-PPRLTHLETSITRHKAHI 182 (893)
Q Consensus 161 ~K~~-~~r~~~le~~ierhk~Hi 182 (893)
.... ..=-.+|....+..+.|+
T Consensus 193 ~~~s~st~C~EL~~F~D~Yd~~m 215 (420)
T PTZ00473 193 NTFRGSTICNELNNFFDKYKEHL 215 (420)
T ss_pred CCCCccHHHHHHHHHHHHHHhhc
Confidence 2211 222345666666666554
No 151
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=65.17 E-value=83 Score=34.40 Aligned_cols=63 Identities=27% Similarity=0.360 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCCCchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002678 84 LVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELE 154 (893)
Q Consensus 84 L~e~RKlIE~~MErFK~vEKesKtKafSkEGL~~~~k~DP~ekek~E~~~wL~~~IdeL~~QiE~~EaEiE 154 (893)
+...++.+...+.. ..||-.-. ..-|. ....|.-+++.+..+=...-++.|+.+++...++++
T Consensus 151 ~~~~~~~~~~~~~~-~~~E~~g~----~~tg~---~G~Gp~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~ 213 (301)
T PF14362_consen 151 IDQLEKEIDRAQQE-AQCEIFGT----GGTGV---PGKGPRYKEKRAQLDAAQAELDTLQAQIDAAIAALD 213 (301)
T ss_pred HHHHHHHHHHHHHH-HHHhhcCC----CCCCC---CCCCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 33344444444433 44666554 22222 234677777777666666777777777665555554
No 152
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=65.16 E-value=1.6e+02 Score=39.07 Aligned_cols=63 Identities=21% Similarity=0.282 Sum_probs=41.8
Q ss_pred ccchhhhHHHHhhhHHHhHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhHHHHHHhhcc
Q 002678 4 SRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQS 68 (893)
Q Consensus 4 ~RKLQ~EIDr~lKKV~EGve~Fd~i~eK~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s 68 (893)
.++||.||...-.+|.|-.+-|-..-..++.+-. -+|+++++=-.+++=.|..|.+|..|.+.
T Consensus 887 ~~~l~e~~~~~~s~~~e~~~~~~~~~~~l~e~~s--~~e~~k~~~~~~~~~aqk~~~~ine~~s~ 949 (1294)
T KOG0962|consen 887 IEELSEEITRLDSKVKELLERIQPLKVELEEAQS--EKEELKNERNTSEKLAQKKRNDINEKVSL 949 (1294)
T ss_pred HHHHHHHHHHHHHHHHhhHhhhcchhhhHHHHHH--HHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 3578888999999998888888665555443322 23333333222678888899988888653
No 153
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=65.07 E-value=1.4e+02 Score=31.72 Aligned_cols=18 Identities=17% Similarity=0.436 Sum_probs=10.6
Q ss_pred chhhhHHHHhhhHHHhHH
Q 002678 6 KLQGEIDRVLKKVQEGVD 23 (893)
Q Consensus 6 KLQ~EIDr~lKKV~EGve 23 (893)
+++.+.+++-.+|++-++
T Consensus 31 ~~~~~~~~l~~~i~~~l~ 48 (302)
T PF10186_consen 31 QLKEENEELRRRIEEILE 48 (302)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445556666666666555
No 154
>cd07598 BAR_FAM92 The Bin/Amphiphysin/Rvs (BAR) domain of Family with sequence similarity 92 (FAM92). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of proteins from the family with sequence similarity 92 (FAM92), which were originally identified by the presence of the unknown domain DUF1208. This domain shows similarity to the BAR domains of sorting nexins. Mammals contain at least two member types, FAM92A and FAM92B, which may exist in many variants. The Xenopus homolog of FAM92A1, xVAP019, is essential for embryo survival and cell differentiation. FAM92A1 may be involved in regulating cell proliferation and apoptosis. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=65.00 E-value=32 Score=36.57 Aligned_cols=50 Identities=22% Similarity=0.341 Sum_probs=30.1
Q ss_pred hhhHHHHhhhHHHhHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhH
Q 002678 8 QGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYR 59 (893)
Q Consensus 8 Q~EIDr~lKKV~EGve~Fd~i~eK~~~a~n~nQKEKlE~DLKKEIKKLQR~R 59 (893)
|.++++.+++|.|-+..|..+..-+...--.. .. -.+.|.+.++||-|+|
T Consensus 78 q~qv~~l~~~v~epLk~Y~~l~k~~k~~~K~~-~~-ar~~~~~~~~~leklk 127 (211)
T cd07598 78 QAEVERLEAKVVQPLALYGTICKHARDDLKNT-FT-ARNKELKQLKQLEKLR 127 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-HHHHHHHHHHHHHHHH
Confidence 56899999999999999998884433221000 00 2223334556666665
No 155
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=64.81 E-value=1.2e+02 Score=38.45 Aligned_cols=56 Identities=16% Similarity=0.209 Sum_probs=39.4
Q ss_pred hhhccccccccccCC-CCCCCchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 002678 103 KETKTKAFSKEGLGQ-QPKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTV 158 (893)
Q Consensus 103 KesKtKafSkEGL~~-~~k~DP~ekek~E~~~wL~~~IdeL~~QiE~~EaEiE~Ls~ 158 (893)
-..|.|+++.-+-.. ...+..+-.+|+.+|.-|++.+|+|.+.+|.--.|++.+.+
T Consensus 514 ~qlkq~q~a~~~~~~~~s~L~aa~~~ke~irq~ikdqldelskE~esk~~eidi~n~ 570 (1118)
T KOG1029|consen 514 HQLKQKQSAHKETTQRKSELEAARRKKELIRQAIKDQLDELSKETESKLNEIDIFNN 570 (1118)
T ss_pred HHHHHhhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 345666666544433 22333445678889999999999999999888888888754
No 156
>cd07681 F-BAR_PACSIN3 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 3 (PACSIN3). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 3 or Syndapin III is expressed ubiquitously and regulates glucose uptake in adipocytes through its role in GLUT1 trafficking. It also modulates the subcellular localization and stimulus-specific function of the cation channel TRPV4. PACSIN 3 contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to
Probab=64.73 E-value=1.6e+02 Score=32.65 Aligned_cols=41 Identities=15% Similarity=0.379 Sum_probs=33.6
Q ss_pred HHHHhhhHHHhHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHH
Q 002678 11 IDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQR 57 (893)
Q Consensus 11 IDr~lKKV~EGve~Fd~i~eK~~~a~n~nQKEKlE~DLKKEIKKLQR 57 (893)
-++++|+|..|...=+++-+=+. +|-++|.+--|.+.+|-|
T Consensus 7 Y~~~vkR~~dG~~~C~el~~f~~------eRA~IE~~YAk~L~~lak 47 (258)
T cd07681 7 YRRTVKRIEDGYRLCNDLVSCFQ------ERAKIEKGYAQQLSDWAR 47 (258)
T ss_pred hHHHHHHHHhHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHH
Confidence 47899999999999888877663 688888888888887764
No 157
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=64.63 E-value=1.4e+02 Score=35.35 Aligned_cols=59 Identities=27% Similarity=0.467 Sum_probs=39.9
Q ss_pred cccchhhhHHHHhhhHHHhHHHHHHHHHHhhcCCCchhHHHHHH------HHHHHHHHHHHhHHH
Q 002678 3 ASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEA------DLKKEIKKLQRYRDQ 61 (893)
Q Consensus 3 a~RKLQ~EIDr~lKKV~EGve~Fd~i~eK~~~a~n~nQKEKlE~------DLKKEIKKLQR~RDQ 61 (893)
.+.||-.|-|+++.||++-=++-+.+-.-|..-.-.--+-+||. .++|||||||.|=+.
T Consensus 211 ~k~kL~~~Sd~lltkVDDLQD~vE~LRkDV~~RgVRp~~~qLe~v~kdi~~a~keL~~m~~~i~~ 275 (426)
T smart00806 211 SKKKLSEDSDSLLTKVDDLQDIIEALRKDVAQRGVRPSKKQLETVQKELETARKELKKMEEYIDI 275 (426)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45688899999999999988888887776665444333444443 456666666655433
No 158
>PTZ00332 paraflagellar rod protein; Provisional
Probab=64.25 E-value=1.6e+02 Score=35.60 Aligned_cols=72 Identities=18% Similarity=0.208 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccc---CCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhhhhhhhHHHHHH
Q 002678 137 NLVSELESQIDSFEAELEGLTVKK---GKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYV 213 (893)
Q Consensus 137 ~~IdeL~~QiE~~EaEiE~Ls~KK---~K~~~~r~~~le~~ierhk~Hi~kLE~lLRlLdN~~l~pe~V~~IKddieyYv 213 (893)
+-|.+|.+|+..+-.|--..-.++ .+....|..+.+.+++----|-.+|+.++- ..+....+-..|+.||
T Consensus 324 nrI~eLer~Lq~l~~eR~~eV~rRIe~~~rEekRr~~yeqFl~~asQHkqrL~~tv~-------Ncd~a~~~~~~lee~V 396 (589)
T PTZ00332 324 NKIQDLERQLQRLGTERFEEVKRRIEENDREEKRRVEYQQFLEVAGQHKKLLELTVY-------NCDLALRCTGLVEELV 396 (589)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 556666666665553322111111 122345888889999888889999988876 3455556666666666
Q ss_pred Hh
Q 002678 214 ER 215 (893)
Q Consensus 214 e~ 215 (893)
.+
T Consensus 397 ~e 398 (589)
T PTZ00332 397 SE 398 (589)
T ss_pred HH
Confidence 53
No 159
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=63.94 E-value=68 Score=36.40 Aligned_cols=81 Identities=22% Similarity=0.270 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHH----HHHHhhhhc---ccCCCCchhHHHHHHHHHH-HHHHHHHHHHHHHhhhCCCCC----hhhhhhh
Q 002678 138 LVSELESQIDSF----EAELEGLTV---KKGKTRPPRLTHLETSITR-HKAHIMKLELILRLLDNDELS----PEQVNDV 205 (893)
Q Consensus 138 ~IdeL~~QiE~~----EaEiE~Ls~---KK~K~~~~r~~~le~~ier-hk~Hi~kLE~lLRlLdN~~l~----pe~V~~I 205 (893)
-|+.|+.+-|.| |.|-|.|.. ||-.+=...+.+|+..+++ +.|||.+|-..|..|.++... -+++..-
T Consensus 85 kl~~l~keKe~L~~~~e~EEE~ltn~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~~~q~~le~Lr~E 164 (310)
T PF09755_consen 85 KLQQLKKEKETLALKYEQEEEFLTNDLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEKSAKQEELERLRRE 164 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 356666665554 333344432 3333222334478888866 789999999999999876543 4677777
Q ss_pred hhHHHHHHHhCCC
Q 002678 206 KDLLEDYVERNQD 218 (893)
Q Consensus 206 KddieyYve~nqd 218 (893)
|=|+|.-+|..|+
T Consensus 165 KVdlEn~LE~EQE 177 (310)
T PF09755_consen 165 KVDLENTLEQEQE 177 (310)
T ss_pred HHhHHHHHHHHHH
Confidence 8889999987766
No 160
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=63.78 E-value=25 Score=41.45 Aligned_cols=31 Identities=16% Similarity=0.304 Sum_probs=20.3
Q ss_pred hhHHHhHHHHHHHHHHhhcCCCchhHHHHHH
Q 002678 16 KKVQEGVDVFDSIWNKVYDTDNANQKEKFEA 46 (893)
Q Consensus 16 KKV~EGve~Fd~i~eK~~~a~n~nQKEKlE~ 46 (893)
-+++--...|++++.++..+.-.|||+.||.
T Consensus 328 sqleSqr~y~e~~~~e~~qsqlen~k~~~e~ 358 (493)
T KOG0804|consen 328 SQLESQRKYYEQIMSEYEQSQLENQKQYYEL 358 (493)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3455556667777777777666677777763
No 161
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=63.61 E-value=31 Score=36.46 Aligned_cols=46 Identities=15% Similarity=0.068 Sum_probs=25.3
Q ss_pred HHHHHHHHHhhhCCCCChhhhhhhhhHHHHHHHhCCCCccccCCCcccccC
Q 002678 182 IMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQDDFEEFSDVDELYHL 232 (893)
Q Consensus 182 i~kLE~lLRlLdN~~l~pe~V~~IKddieyYve~nqddf~ef~dde~iYd~ 232 (893)
...+..+++.+. .++-+.|.-+|+.|--|...-... +..||..|+.
T Consensus 188 ~~~~~~~~~~~Q--~lEe~Ri~~lk~~l~~~a~~~s~~---cv~~d~~~e~ 233 (236)
T cd07651 188 NREWKAALDDFQ--DLEEERIQFLKSNCWTFANNISTL---CVDDDESCER 233 (236)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH---HcCcHHHHHH
Confidence 334455555443 356677777888877776533332 2334555554
No 162
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=63.38 E-value=41 Score=40.96 Aligned_cols=78 Identities=21% Similarity=0.237 Sum_probs=43.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhhhhh
Q 002678 127 AKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDV 205 (893)
Q Consensus 127 ek~E~~~wL~~~IdeL~~QiE~~EaEiE~Ls~KK~K~~~~r~~~le~~ierhk~Hi~kLE~lLRlLdN~~l~pe~V~~I 205 (893)
++..-.+=|+..|++|..+|+.++.+++.+...-++ -..++++.+...++..--..-.+.++.+|.+..-..++++.+
T Consensus 325 ~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q-~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni~kL~~~ 402 (594)
T PF05667_consen 325 EQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQ-LEEELEEKEAENEELEEELKLKKKTVELLPDAEENIAKLQAL 402 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 344466678889999999999999999888543221 112233333333444444444445555555544333333333
No 163
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=63.37 E-value=43 Score=43.69 Aligned_cols=23 Identities=26% Similarity=0.458 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 002678 134 WLNNLVSELESQIDSFEAELEGL 156 (893)
Q Consensus 134 wL~~~IdeL~~QiE~~EaEiE~L 156 (893)
=+..++.+|+.+|..++...+.+
T Consensus 620 ~~~e~~~~l~~~i~sL~~~~~~~ 642 (1317)
T KOG0612|consen 620 EISEIIAELKEEISSLEETLKAG 642 (1317)
T ss_pred HHHHHHHHHHhHHHHHHHHHHhh
Confidence 34455555666666665555544
No 164
>PF08385 DHC_N1: Dynein heavy chain, N-terminal region 1; InterPro: IPR013594 Dynein heavy chains interact with other heavy chains to form dimers, and with intermediate chain-light chain complexes to form a basal cargo binding unit []. The region featured in this family includes the sequences implicated in mediating these interactions []. It is thought to be flexible and not to adopt a rigid conformation [].
Probab=63.01 E-value=3e+02 Score=32.20 Aligned_cols=89 Identities=13% Similarity=0.246 Sum_probs=46.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccC-------CCCc---hhHHHHHHHHHHHHHHHHHHHHHH-HhhhC
Q 002678 126 KAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKG-------KTRP---PRLTHLETSITRHKAHIMKLELIL-RLLDN 194 (893)
Q Consensus 126 kek~E~~~wL~~~IdeL~~QiE~~EaEiE~Ls~KK~-------K~~~---~r~~~le~~ierhk~Hi~kLE~lL-RlLdN 194 (893)
.-|....+.....++.+.+.|+.+...++......+ +.-+ .++.-+.....|-+.-+.+|+.++ ..+.+
T Consensus 346 ~I~~~l~~~~~~ll~~~~~ei~~~~~~f~~~~~~~~~~~~~~~~~~Ppvag~i~w~r~L~~ri~~~~~~~~~~~g~~~~~ 425 (579)
T PF08385_consen 346 RIRKALQEKYEQLLQQFKEEIDQLKKIFDNQKEKSETDNPPLPRNLPPVAGAIIWARQLERRIKEPMQRLKSLLGPDWLD 425 (579)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccCCcHHHHHHHHHHHHHHHHhHHHHHHHHhccchhhc
Confidence 344556666677777777777777777766432111 1111 245555555566666666666666 22222
Q ss_pred CCCC---hhhhhhhhhHHHHHHH
Q 002678 195 DELS---PEQVNDVKDLLEDYVE 214 (893)
Q Consensus 195 ~~l~---pe~V~~IKddieyYve 214 (893)
..-- ....+.+.+.|+.|..
T Consensus 426 ~~~~~~~~~~~~~l~~~l~~~e~ 448 (579)
T PF08385_consen 426 SPEGKELKQKYNELLKKLDEYEK 448 (579)
T ss_pred chhHHHHHHHHHHHHHHHHHHHH
Confidence 2111 2334445555555543
No 165
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=62.84 E-value=2.5e+02 Score=31.47 Aligned_cols=54 Identities=19% Similarity=0.209 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhCCC
Q 002678 135 LNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDE 196 (893)
Q Consensus 135 L~~~IdeL~~QiE~~EaEiE~Ls~KK~K~~~~r~~~le~~ierhk~Hi~kLE~lLRlLdN~~ 196 (893)
|+.+|+.=+..++.++.+-..|..| -..++..++...-|+..||..+.-|++..
T Consensus 139 i~~iv~aDk~ile~qk~dk~~Le~k--------q~~l~~~~e~l~al~~e~e~~~~~L~~qk 192 (265)
T COG3883 139 ISVIVDADKKILEQQKEDKKSLEEK--------QAALEDKLETLVALQNELETQLNSLNSQK 192 (265)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555554444322 23456666666777777777777766543
No 166
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=62.80 E-value=41 Score=30.86 Aligned_cols=56 Identities=18% Similarity=0.358 Sum_probs=43.4
Q ss_pred hhHHHHhhhHHHhHHH----HHHH---HHHhhcCCCchhHHHHHHHHHHHHHHHHHhHHHHHH
Q 002678 9 GEIDRVLKKVQEGVDV----FDSI---WNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKT 64 (893)
Q Consensus 9 ~EIDr~lKKV~EGve~----Fd~i---~eK~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQIKt 64 (893)
.....+||.+++-+.. |..+ |.++..+.+..+|+.|+.+|++=+|+|-.--|||..
T Consensus 13 ~~Ls~vl~~LqDE~~hm~~e~~~L~~~~~~~d~s~~~~~R~~L~~~l~~lv~~mE~K~dQI~~ 75 (79)
T PF06657_consen 13 EALSEVLKALQDEFGHMKMEHQELQDEYKQMDPSLGRRKRRDLEQELEELVKRMEAKADQIYK 75 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666655543 3344 777888888999999999999999999999999964
No 167
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=62.79 E-value=2e+02 Score=37.44 Aligned_cols=86 Identities=22% Similarity=0.228 Sum_probs=56.1
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc------CCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCC
Q 002678 125 EKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKK------GKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELS 198 (893)
Q Consensus 125 ekek~E~~~wL~~~IdeL~~QiE~~EaEiE~Ls~KK------~K~~~~r~~~le~~ierhk~Hi~kLE~lLRlLdN~~l~ 198 (893)
-+++.|-..=|...|++..-+++.|.+++-.+..++ +|.--..-..|+..|+..+.-+.+=|..||..-+..|-
T Consensus 427 l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWREE~~l~~~i~~~~~dl~~~~~~L~~~~~r~v~ 506 (1200)
T KOG0964|consen 427 LKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELWREEKKLRSLIANLEEDLSRAEKNLRATMNRSVA 506 (1200)
T ss_pred HHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhh
Confidence 355666677788888888888888888776653221 11000112346777788888888888888887776654
Q ss_pred --hhhhhhhhhHHH
Q 002678 199 --PEQVNDVKDLLE 210 (893)
Q Consensus 199 --pe~V~~IKddie 210 (893)
-+-|.+|.+++.
T Consensus 507 nGi~~v~~I~e~~k 520 (1200)
T KOG0964|consen 507 NGIDSVRKIKEELK 520 (1200)
T ss_pred hhhHHHHHHHHHhc
Confidence 455666666555
No 168
>KOG2150 consensus CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=62.70 E-value=3.4 Score=49.37 Aligned_cols=145 Identities=53% Similarity=0.970 Sum_probs=140.5
Q ss_pred CCcccccccccchHHHhhhCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCChhhhhhcccCCCCCcceEEEeccCCC
Q 002678 733 GGMHDQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQN 812 (893)
Q Consensus 733 G~~~e~~LNLns~E~ly~tF~sPwdsep~r~~~Pr~p~~~P~cY~q~ppP~L~np~~f~K~Ki~kFs~ETLFYIFYs~Pg 812 (893)
++++++..++-+.|.+|...+.|-+++.++.|+|++|+.+|++|++++++..++..+|.| |+.|||||||||++|
T Consensus 430 ~~~~e~i~~~~~~e~a~~~~~~psdsE~pq~y~pk~p~~tp~~~~q~~~~~~ds~~~~~r-----l~~dTLFfiFY~~qg 504 (575)
T KOG2150|consen 430 EITNEQIRFLYALEAACKLVPIPSDSEKPQGYLPKTPLPTPSYFPQTPPSLTDSTEITER-----LDPDTLFFIFYYQQG 504 (575)
T ss_pred cccccccchHHHHHhhhccCCCCchhhcccCCCCCCCCCCCccCCCCCCcccchhhHHhh-----ccccceeeEEeeecc
Confidence 367899999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred hHHHHHHHHHHhhcccccccccceeeeccCCCcccCCCcceEEEEEEcCcCCccccccccccccccceEEeccchhhh
Q 002678 813 TYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDE 890 (893)
Q Consensus 813 D~~Ql~AA~EL~~RgWRYHKk~~~WftR~~eP~v~t~~~ErGtY~yFDp~~~~~~~~~~W~qk~K~eFtl~Y~~LE~r 890 (893)
++.|++||+||++|+||||++|.+||+|+.||+.+|+.||+|.|+|||+ ..||+|+|.+|+|+|.+||+.
T Consensus 505 t~eQylAaKeLkk~sWrfhkky~tWFqR~~EpK~itd~~E~G~y~yFD~--------~~W~qrkK~dFtfeY~yLE~~ 574 (575)
T KOG2150|consen 505 TYEQYLAAKELKKRSWRFHKKYTTWFQRHEEPKNITDIYEQGDYRYFDY--------KDWSQRKKIDFTFEYQYLEDS 574 (575)
T ss_pred hHHHHHHHHHHhhcceeEeecceeEeeeccCccchhhhhhcCceEEEeh--------hHhhhhhccceeeehhhccCC
Confidence 9999999999999999999999999999999999999999999999999 489999999999999999975
No 169
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=62.32 E-value=78 Score=38.45 Aligned_cols=29 Identities=10% Similarity=0.401 Sum_probs=20.2
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002678 125 EKAKSETRDWLNNLVSELESQIDSFEAEL 153 (893)
Q Consensus 125 ekek~E~~~wL~~~IdeL~~QiE~~EaEi 153 (893)
..-|.+...|...-|.+++.+.+..-.+.
T Consensus 263 ~~nR~diE~~Y~~kI~~i~~~~~~~~~~~ 291 (546)
T KOG0977|consen 263 RQNRKDIESWYKRKIQEIRTSAERANVEQ 291 (546)
T ss_pred HHhHHHHHHHHHHHHHHHHhhhccccchh
Confidence 35677788888888888886655444333
No 170
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=62.04 E-value=2.2e+02 Score=32.28 Aligned_cols=25 Identities=20% Similarity=0.215 Sum_probs=17.8
Q ss_pred HHHHHHHHHhhhCCC-CChhhhhhhh
Q 002678 182 IMKLELILRLLDNDE-LSPEQVNDVK 206 (893)
Q Consensus 182 i~kLE~lLRlLdN~~-l~pe~V~~IK 206 (893)
..+.+.|...|.+|. |+.|++.-|+
T Consensus 264 kera~ei~EKfk~GekLt~EelllLq 289 (294)
T COG1340 264 KERAEEIYEKFKRGEKLTTEELLLLQ 289 (294)
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHH
Confidence 446667777777776 8888887766
No 171
>COG2882 FliJ Flagellar biosynthesis chaperone [Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones]
Probab=61.71 E-value=1.1e+02 Score=31.38 Aligned_cols=124 Identities=18% Similarity=0.168 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCC
Q 002678 41 KEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPK 120 (893)
Q Consensus 41 KEKlE~DLKKEIKKLQR~RDQIKtW~~s~eIKDK~~~~~~~~~L~e~RKlIE~~MErFK~vEKesKtKafSkEGL~~~~k 120 (893)
++|=+.+++-|++|.+.-.+.+-+=+. .|.++|..++..|.-+- .-|++.
T Consensus 14 ~~k~~e~a~~el~k~~~~~~~~~~qL~---------------~l~~y~~ey~q~~~~k~------------~~G~s~--- 63 (148)
T COG2882 14 AKKEEEEAAIELSKIRSEKENAEEQLK---------------MLSGYRNEYEQNLNEKL------------KSGVSA--- 63 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHH------------hccccH---
Confidence 777788888888888887777655442 58889999988877631 123332
Q ss_pred CCchHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCC
Q 002678 121 TDPKEK-AKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELS 198 (893)
Q Consensus 121 ~DP~ek-ek~E~~~wL~~~IdeL~~QiE~~EaEiE~Ls~KK~K~~~~r~~~le~~ierhk~Hi~kLE~lLRlLdN~~l~ 198 (893)
.+- --..-...|...|+....++..++..+|.... .--.+..|+..++.+.+||+--....|.....-.||++.
T Consensus 64 ---~q~~nyq~fI~~Le~~I~q~~~~~~~~~~~ve~~r~-~w~ek~~~~k~~e~L~er~~~e~~~~e~~~Eqk~mDE~a 138 (148)
T COG2882 64 ---AQWQNYQQFISQLEVAIDQQQSQLSKLRKQVEQKRE-IWQEKQIELKALEKLKERQKTEFLLEENRREQKIMDELA 138 (148)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHH
Confidence 121 22334455666677777777767766665421 001223456678888899988888888777766666543
No 172
>PF14735 HAUS4: HAUS augmin-like complex subunit 4
Probab=61.56 E-value=1.2e+02 Score=33.10 Aligned_cols=86 Identities=20% Similarity=0.239 Sum_probs=52.4
Q ss_pred cchhhhHHHHhhhHHHhHHHHHHHHHHhhcCCC-chhHHHHHHHHHHHHHHHHHhHHHHHHhhccccccccccchhhHHH
Q 002678 5 RKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDN-ANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQA 83 (893)
Q Consensus 5 RKLQ~EIDr~lKKV~EGve~Fd~i~eK~~~a~n-~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~eIKDK~~~~~~~~~ 83 (893)
.-|+.||+.=||+.-+.+-.|-.--.--.+..+ ...-=+|=+-|++|++.++..+.+++.-...-+-+ .+-|-+.
T Consensus 39 ~~L~~eiE~~Lk~KC~~Lls~~~p~~~~~s~~l~~ak~~~L~~~l~~ek~~~~~~k~~~~e~~~~l~~q----~~~y~~v 114 (238)
T PF14735_consen 39 QRLPREIEERLKKKCFSLLSYHQPDSESSSEGLKAAKSWQLPELLREEKQRLEKEKAQLRELLVLLERQ----FATYYQV 114 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCccccchhhHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH
Confidence 458889999999998887776532221111111 22345788899999999999999888755432211 2334445
Q ss_pred HHHHHHHHHHH
Q 002678 84 LVDARKLIERE 94 (893)
Q Consensus 84 L~e~RKlIE~~ 94 (893)
|..+=.+.+.=
T Consensus 115 L~~cl~~L~~l 125 (238)
T PF14735_consen 115 LLQCLQLLQKL 125 (238)
T ss_pred HHHHHHHHHHH
Confidence 44444444433
No 173
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=61.54 E-value=73 Score=30.57 Aligned_cols=32 Identities=34% Similarity=0.540 Sum_probs=27.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002678 125 EKAKSETRDWLNNLVSELESQIDSFEAELEGL 156 (893)
Q Consensus 125 ekek~E~~~wL~~~IdeL~~QiE~~EaEiE~L 156 (893)
|....||..+|.+-|+.|+++++.++.++..+
T Consensus 82 E~~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l 113 (129)
T cd00584 82 EKDLEEAIEFLDKKIEELTKQIEKLQKELAKL 113 (129)
T ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57778899999999999999999998887665
No 174
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=61.26 E-value=36 Score=42.53 Aligned_cols=139 Identities=18% Similarity=0.251 Sum_probs=74.0
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHhhccc--cccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccc-
Q 002678 39 NQKEKFEADLKKEIKKLQRYRDQIKTWIQSS--EIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGL- 115 (893)
Q Consensus 39 nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~--eIKDK~~~~~~~~~L~e~RKlIE~~MErFK~vEKesKtKafSkEGL- 115 (893)
|=|+.||+- -.+-+||+--=.-|-.|+.-- +|++.- ++.----++-.+-+-.|++-||.|+|.++--.-
T Consensus 89 ~ir~~lea~-~~~w~kl~~~l~el~~wl~~kd~el~~q~-------p~ggd~~avq~q~~~~~a~~re~k~k~~~~~s~~ 160 (966)
T KOG4286|consen 89 NIRSHLEAS-SDQWKRLHLSLQELLVWLQLKDDELSRQA-------PIGGDFPAVQKQNDVHRAFKRELKTKEPVIMSTL 160 (966)
T ss_pred HHHHHHHHH-HHHHHHHhhhHHHHHHHHHhhhHHHHhcC-------CCCCChHHHHHHHHHHHHHHHHHhhcccHHHHHH
Confidence 445555543 234555655555566787643 333332 333333455667788899999999998764221
Q ss_pred -------CC---------CCCCCchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc------ccCCCCchhHHHHHH
Q 002678 116 -------GQ---------QPKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTV------KKGKTRPPRLTHLET 173 (893)
Q Consensus 116 -------~~---------~~k~DP~ekek~E~~~wL~~~IdeL~~QiE~~EaEiE~Ls~------KK~K~~~~r~~~le~ 173 (893)
+. +++.+-.++++ +++.-.-|+.|-+....+-|+|.. |+--+.-+|+.+|+.
T Consensus 161 e~a~~fl~~~p~e~~e~~~~~~e~~p~~r------~q~~~r~~~kqa~~~~~~we~l~~~~~~w~k~v~~~le~l~elq~ 234 (966)
T KOG4286|consen 161 ETARIFLTEQPLEGLEKYQEPRELPPEER------AQNVTRLLRKQAEEVNTEWEKLNLHSADWQRKIDETLERLQELQE 234 (966)
T ss_pred HHHHHHHhcCCCcchhhcCCcccCCHHHH------HHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHHH
Confidence 11 11111112222 223333344444444444444421 222233467888888
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 002678 174 SITRHKAHIMKLELILRL 191 (893)
Q Consensus 174 ~ierhk~Hi~kLE~lLRl 191 (893)
.++....|+..-|.+.--
T Consensus 235 a~~el~~~l~~ae~~~~~ 252 (966)
T KOG4286|consen 235 ATDELDLKLRQAEVIKGS 252 (966)
T ss_pred HHHHHHHhhhHHHhhhhc
Confidence 888888888777776543
No 175
>KOG3565 consensus Cdc42-interacting protein CIP4 [Cytoskeleton]
Probab=60.85 E-value=1.3e+02 Score=37.35 Aligned_cols=48 Identities=17% Similarity=0.349 Sum_probs=38.1
Q ss_pred ccchhhhHHHHhhhHHHhHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHH
Q 002678 4 SRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQR 57 (893)
Q Consensus 4 ~RKLQ~EIDr~lKKV~EGve~Fd~i~eK~~~a~n~nQKEKlE~DLKKEIKKLQR 57 (893)
-|+++...+.+..-++.|++.++.|-+=+ .-|-+.|-++++-...|++
T Consensus 9 ~~~~~d~~~~~~~~~q~gL~~le~~~~~~------~era~~ek~y~~~l~~l~~ 56 (640)
T KOG3565|consen 9 LRELKDAFKATEQSTQNGLDWLERIVQFL------KERADKEKEYEEKLRSLCK 56 (640)
T ss_pred HHHHHhHHHHHHHHHhhhHHHHHHHHHHh------cchhHHHHHHHHHHHHhhh
Confidence 46778888899999999999999986655 3466777778888888877
No 176
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=60.34 E-value=2.5e+02 Score=30.27 Aligned_cols=30 Identities=10% Similarity=0.198 Sum_probs=24.6
Q ss_pred ccchhhhHHHHhhhHHHhHHHHHHHHHHhh
Q 002678 4 SRKLQGEIDRVLKKVQEGVDVFDSIWNKVY 33 (893)
Q Consensus 4 ~RKLQ~EIDr~lKKV~EGve~Fd~i~eK~~ 33 (893)
.+.|..+|+++-+.+.++......+..++.
T Consensus 79 ~~~l~~~l~~~~~~L~~A~~sD~~~~~~~~ 108 (296)
T PF13949_consen 79 NASLRKELQKYREYLEQASESDSQLRSKLE 108 (296)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 467888888888888888888888888775
No 177
>PRK10780 periplasmic chaperone; Provisional
Probab=60.10 E-value=80 Score=31.91 Aligned_cols=91 Identities=9% Similarity=0.179 Sum_probs=48.9
Q ss_pred cchhhhHHHHhhh----HHHhHHHHHHHHHHhhcC---CCchhHHHHHHHHHHHHHHHHHhHHHHHHhhccccccccccc
Q 002678 5 RKLQGEIDRVLKK----VQEGVDVFDSIWNKVYDT---DNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVS 77 (893)
Q Consensus 5 RKLQ~EIDr~lKK----V~EGve~Fd~i~eK~~~a---~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~eIKDK~~~ 77 (893)
++.+.++++-|+. +..=...|+..+++++.. -+..+|++.|.+|.+..+.+|+...+... |+.-
T Consensus 42 k~~~~~le~~~~~~q~el~~~~~elq~~~~~~q~~~~~ms~~~~~~~~~el~~~~~~~q~~~~~~qq-----~~~~---- 112 (165)
T PRK10780 42 TGVSKQLENEFKGRASELQRMETDLQAKMQKLQRDGSTMKGSDRTKLEKDVMAQRQTFSQKAQAFEQ-----DRRR---- 112 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHH----
Confidence 3444444444444 444444777777777543 34567788888776555555555443321 1111
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhcccccc
Q 002678 78 ASYEQALVDARKLIEREMERFKICEKETKTKAFS 111 (893)
Q Consensus 78 ~~~~~~L~e~RKlIE~~MErFK~vEKesKtKafS 111 (893)
...+.++-|-.++. ++|++-.|.+.|+
T Consensus 113 -----~~~e~~~~i~~ki~--~ai~~vak~~gy~ 139 (165)
T PRK10780 113 -----RSNEERNKILTRIQ--TAVKSVANKQGYD 139 (165)
T ss_pred -----HHHHHHHHHHHHHH--HHHHHHHHHcCCe
Confidence 23333344444443 4577777877776
No 178
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=59.82 E-value=2.7e+02 Score=32.22 Aligned_cols=41 Identities=7% Similarity=0.210 Sum_probs=19.4
Q ss_pred HhhhHHHhHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhHHHH
Q 002678 14 VLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQI 62 (893)
Q Consensus 14 ~lKKV~EGve~Fd~i~eK~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQI 62 (893)
+...+.+-.+.+|++..++.. .+..-|.+.-.+|++++..+
T Consensus 258 ~~~~~~e~~q~Ld~l~~rL~~--------a~~~~L~~~~~~L~~L~~rL 298 (438)
T PRK00286 258 AVPDRAELLQRLQQLQQRLAR--------AMRRRLEQKRQRLDQLARRL 298 (438)
T ss_pred hCccHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHhhh
Confidence 334444445555555555522 23344444445555555444
No 179
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=59.62 E-value=64 Score=36.90 Aligned_cols=56 Identities=13% Similarity=0.154 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHhHHHHHHhhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 002678 46 ADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTK 108 (893)
Q Consensus 46 ~DLKKEIKKLQR~RDQIKtW~~s~eIKDK~~~~~~~~~L~e~RKlIE~~MErFK~vEKesKtK 108 (893)
..+++++|+|+.+.+-||.-..+..-++++ .+.+.++.|.++=-.|.++|....-|
T Consensus 39 ssI~~QkkrLk~L~~sLk~~~~~~~~e~~~-------~i~~L~~~Ik~r~~~l~DmEa~LPkk 94 (330)
T PF07851_consen 39 SSISHQKKRLKELKKSLKRCKKSLSAEERE-------LIEKLEEDIKERRCQLFDMEAFLPKK 94 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCChhHHH-------HHHHHHHHHHHHHhhHHHHHhhCCCC
Confidence 456777777888888887776554334444 77777888888777888888665333
No 180
>PTZ00108 DNA topoisomerase 2-like protein; Provisional
Probab=59.23 E-value=94 Score=41.57 Aligned_cols=110 Identities=25% Similarity=0.315 Sum_probs=56.5
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHhhccc-cccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCC
Q 002678 40 QKEKFEADLKKEIKKLQRYRDQIKTWIQSS-EIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQ 118 (893)
Q Consensus 40 QKEKlE~DLKKEIKKLQR~RDQIKtW~~s~-eIKDK~~~~~~~~~L~e~RKlIE~~MErFK~vEKesKtKafSkEGL~~~ 118 (893)
.|+.+-..|++++.+|.-.-.=|+.++... .|..++ +-.-...|.+....+|+...+..+.+....+.....
T Consensus 996 R~~~~l~~l~~~~~~l~~~~rFI~~vi~~~i~i~~~~-------k~~l~~~L~~~gf~~~~~~~~~~~~~~~~~~~~~~~ 1068 (1388)
T PTZ00108 996 RKEYLLGKLERELARLSNKVRFIKHVINGELVITNAK-------KKDLVKELKKLGYVRFKDIIKKKSEKITAEEEEGAE 1068 (1388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCeeEEccCC-------HHHHHHHHHHcCCCccchhhhhcccccccccccccc
Confidence 356666677777777776666666666543 344444 111112233333344554433333333222222221
Q ss_pred CCCCchHHhH-------HHHHHHH---------HHHHHHHHHHHHHHHHHHhhhh
Q 002678 119 PKTDPKEKAK-------SETRDWL---------NNLVSELESQIDSFEAELEGLT 157 (893)
Q Consensus 119 ~k~DP~ekek-------~E~~~wL---------~~~IdeL~~QiE~~EaEiE~Ls 157 (893)
.. +..+.+- ...-+|| .+-|+.|.+|++..+.|++.|.
T Consensus 1069 ~~-~~~~~~~~~~~~~~~~~ydYLL~M~i~sLT~e~v~kL~~e~~~~~~e~~~L~ 1122 (1388)
T PTZ00108 1069 ED-DEADDEDDEEELGAAVSYDYLLSMPIWSLTKEKVEKLNAELEKKEKELEKLK 1122 (1388)
T ss_pred cc-cccccccccccccchhhhHHHhcCCHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 1101000 0135566 5679999999999999999983
No 181
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=59.18 E-value=56 Score=36.24 Aligned_cols=7 Identities=29% Similarity=0.477 Sum_probs=3.2
Q ss_pred cccccCC
Q 002678 111 SKEGLGQ 117 (893)
Q Consensus 111 SkEGL~~ 117 (893)
-++|+..
T Consensus 188 ~~~g~is 194 (423)
T TIGR01843 188 KEKGLVS 194 (423)
T ss_pred HHcCCCC
Confidence 3445544
No 182
>PF15294 Leu_zip: Leucine zipper
Probab=59.02 E-value=1.9e+02 Score=32.55 Aligned_cols=132 Identities=17% Similarity=0.301 Sum_probs=67.1
Q ss_pred hhHHHHhhhHHHhHHHHHHHHHHhhcCCC-chhHHHHHHHHHHHHH--------HHHHhHHHHHHhhccccccccccchh
Q 002678 9 GEIDRVLKKVQEGVDVFDSIWNKVYDTDN-ANQKEKFEADLKKEIK--------KLQRYRDQIKTWIQSSEIKDKKVSAS 79 (893)
Q Consensus 9 ~EIDr~lKKV~EGve~Fd~i~eK~~~a~n-~nQKEKlE~DLKKEIK--------KLQR~RDQIKtW~~s~eIKDK~~~~~ 79 (893)
.|||.||+-+.+.+-. |+.|.--+-.+- .-=+--+.+++..|++ =|+++=.|=-.|--.-. .|.
T Consensus 11 k~Vds~F~Dlk~srL~-e~t~T~~EV~~~ldgL~~~v~~~vesEL~N~~htn~lllrql~~qAek~~lkl~-~di----- 83 (278)
T PF15294_consen 11 KEVDSCFQDLKSSRLR-EDTYTSDEVTEMLDGLQVVVKSEVESELINTSHTNVLLLRQLFSQAEKWYLKLQ-TDI----- 83 (278)
T ss_pred HHHHHhhhHHHHHHHH-HHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHhc-ccH-----
Confidence 5888888886665543 333322100000 0001122233333333 25667777778843222 333
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCCCchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002678 80 YEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGL 156 (893)
Q Consensus 80 ~~~~L~e~RKlIE~~MErFK~vEKesKtKafSkEGL~~~~k~DP~ekek~E~~~wL~~~IdeL~~QiE~~EaEiE~L 156 (893)
.=+|+|.++|+ |++|-.-|=-...|.+.. .. ..|+.|.- +. -...-|+..|+.|+.+++.+..-+-++
T Consensus 84 ---selEn~eLLe~-i~~~E~~~~~~~~~~~~~--~~-~~KL~pl~-e~-g~~~ll~kEi~rLq~EN~kLk~rl~~l 151 (278)
T PF15294_consen 84 ---SELENRELLEQ-IAEFEKQEFTSSFKPNQE--TS-KPKLEPLN-ES-GGSELLNKEIDRLQEENEKLKERLKSL 151 (278)
T ss_pred ---HHHHHHHHHHH-HHHHHHhhhcccCCcccc--cc-cccccccc-cc-chHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 24678888875 667654444333322221 11 23566632 22 234667788888888888777766554
No 183
>PF12297 EVC2_like: Ellis van Creveld protein 2 like protein; InterPro: IPR022076 This family of proteins is found in eukaryotes. Proteins in this family are typically between 571 and 1310 amino acids in length. There are two conserved sequence motifs: LPA and ELH. EVC2 is implicated in Ellis van Creveld chondrodysplastic dwarfism in humans. Mutations in this protein can give rise to this congenital condition. LIMBIN is a protein which shares around 80% sequence homology with EVC2 and it is implicated in a similar condition in bovine chondrodysplastic dwarfism.
Probab=58.74 E-value=3e+02 Score=32.80 Aligned_cols=41 Identities=17% Similarity=0.298 Sum_probs=30.4
Q ss_pred HHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhHHHHHH
Q 002678 24 VFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKT 64 (893)
Q Consensus 24 ~Fd~i~eK~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQIKt 64 (893)
.|+.-.--+..-=|-.-|+|.|+..+||-..+-+..+.+|.
T Consensus 214 Ey~rkm~aL~~~c~lE~r~k~e~~~qre~a~~~eaeel~k~ 254 (429)
T PF12297_consen 214 EYDRKMVALTAECNLETRKKMEAQHQREMAEMEEAEELLKH 254 (429)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 44444444444445666999999999999999999999886
No 184
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=58.45 E-value=1.9e+02 Score=33.10 Aligned_cols=135 Identities=21% Similarity=0.294 Sum_probs=71.3
Q ss_pred HHHHHHHHHHhHHHHHHhhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhcccc-----ccccccCCCCC-C
Q 002678 48 LKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKA-----FSKEGLGQQPK-T 121 (893)
Q Consensus 48 LKKEIKKLQR~RDQIKtW~~s~eIKDK~~~~~~~~~L~e~RKlIE~~MErFK~vEKesKtKa-----fSkEGL~~~~k-~ 121 (893)
|-+|+-+-|.-|||.| .++|+=+|||..++|..+.-- |.+.++..... .
T Consensus 14 L~~eLe~cq~ErDqyK-------------------------lMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~ 68 (319)
T PF09789_consen 14 LSQELEKCQSERDQYK-------------------------LMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENK 68 (319)
T ss_pred HHHHHHHHHHHHHHHH-------------------------HHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchh
Confidence 6678888888888876 345666667777776554333 33223322110 0
Q ss_pred C--chHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc--cC---------CCCchhHHHHHHHHHHHHHHHHHHHHH
Q 002678 122 D--PKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVK--KG---------KTRPPRLTHLETSITRHKAHIMKLELI 188 (893)
Q Consensus 122 D--P~ekek~E~~~wL~~~IdeL~~QiE~~EaEiE~Ls~K--K~---------K~~~~r~~~le~~ierhk~Hi~kLE~l 188 (893)
. ..=.+-.|-..=|..-|++|+..+..+.-|+.-|..+ +- +......+.|-..+|+-+..+..||.=
T Consensus 69 ~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d 148 (319)
T PF09789_consen 69 NLAQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERD 148 (319)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0001112222334444555555555555555444221 10 011234556666778888888888888
Q ss_pred HHhhhCCCCChhhhhhhhhHHHHHH
Q 002678 189 LRLLDNDELSPEQVNDVKDLLEDYV 213 (893)
Q Consensus 189 LRlLdN~~l~pe~V~~IKddieyYv 213 (893)
++.+- |+.+++.-+-++|-
T Consensus 149 ~qs~l------DEkeEl~~ERD~yk 167 (319)
T PF09789_consen 149 LQSLL------DEKEELVTERDAYK 167 (319)
T ss_pred HHHHH------HHHHHHHHHHHHHH
Confidence 88653 45555555555553
No 185
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=58.18 E-value=1.6e+02 Score=37.81 Aligned_cols=68 Identities=18% Similarity=0.185 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcc--cCC----CCchhHHHHHHHHHHH-HHHHHHHHHHHHhhhCCCCC
Q 002678 131 TRDWLNNLVSELESQIDSFEAELEGLTVK--KGK----TRPPRLTHLETSITRH-KAHIMKLELILRLLDNDELS 198 (893)
Q Consensus 131 ~~~wL~~~IdeL~~QiE~~EaEiE~Ls~K--K~K----~~~~r~~~le~~ierh-k~Hi~kLE~lLRlLdN~~l~ 198 (893)
...=|.++|++|.++-+.+|+..|++..+ +-| ....++++|+..+..| .-|...++.+..+|.+-...
T Consensus 467 ~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~~~~~~qs~~~~~~~l~~~l~~KD~~ 541 (980)
T KOG0980|consen 467 ENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQRTLSNLAQSHNNQLAQLEDLLKQKDRL 541 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHH
Confidence 34456677777777777777766665321 111 2245777777776544 56777777777777765543
No 186
>TIGR01612 235kDa-fam reticulocyte binding/rhoptry protein. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Probab=57.84 E-value=3e+02 Score=39.19 Aligned_cols=63 Identities=21% Similarity=0.383 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHhhhCCCCChhhhhhhhhHHHHHHHhCCC---Ccccc-CCCcccccCCCCCCccc
Q 002678 178 HKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQD---DFEEF-SDVDELYHLLPLDKVES 240 (893)
Q Consensus 178 hk~Hi~kLE~lLRlLdN~~l~pe~V~~IKddieyYve~nqd---df~ef-~dde~iYd~L~Lde~~~ 240 (893)
|.--|..++.----|..+.-+...|++||..|..||..-+. |...+ .+-..||+-|-|.....
T Consensus 1296 ~~~~I~~i~ekS~kl~~~~s~~s~i~~IKk~lq~nlq~a~~~nn~I~~~L~~Ikn~~~iL~snn~~~ 1362 (2757)
T TIGR01612 1296 HDENISDIREKSLKIIEDFSEESDINDIKKELQKNLLDAQKHNSDINLYLNEIANIYNILKLNKIKK 1362 (2757)
T ss_pred hHHHHHHHHHhhHHhhhhhcchhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHccHHH
Confidence 34444444422233455666668999999999999976543 11111 13356777776665443
No 187
>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]
Probab=57.60 E-value=2.5e+02 Score=35.50 Aligned_cols=60 Identities=23% Similarity=0.351 Sum_probs=40.2
Q ss_pred ccchhhhHHHHhhhH-HHhHHHHHHHHHHhhcCCC------chhHHHHHHHHHHHHHHH-----HHhHHHHH
Q 002678 4 SRKLQGEIDRVLKKV-QEGVDVFDSIWNKVYDTDN------ANQKEKFEADLKKEIKKL-----QRYRDQIK 63 (893)
Q Consensus 4 ~RKLQ~EIDr~lKKV-~EGve~Fd~i~eK~~~a~n------~nQKEKlE~DLKKEIKKL-----QR~RDQIK 63 (893)
.|-||.|=-|---.+ ++|+..-+.++.|+..-.+ .-.-|-||-.-|+||.++ .|+|+--|
T Consensus 799 LR~LQkeE~R~qqqL~~k~~~q~Eq~~rrFeqE~~~kkr~~d~EmenlErqQkq~iE~~Eq~h~~rlR~eak 870 (1187)
T KOG0579|consen 799 LRRLQKEEARQQQQLQAKGIKQVEQQARRFEQEQTNKKRTSDLEMENLERQQKQEIEDTEQAHEHRLRNEAK 870 (1187)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777766655444 4788888888888874332 223577888888888887 36665444
No 188
>PF13514 AAA_27: AAA domain
Probab=57.51 E-value=2.6e+02 Score=36.37 Aligned_cols=24 Identities=8% Similarity=0.357 Sum_probs=13.9
Q ss_pred HHHHHHhHHHHHHhhccccccccc
Q 002678 52 IKKLQRYRDQIKTWIQSSEIKDKK 75 (893)
Q Consensus 52 IKKLQR~RDQIKtW~~s~eIKDK~ 75 (893)
-++|+.++.+|...+....+++..
T Consensus 821 ~~~l~~~~~~l~~L~~~a~~~~~e 844 (1111)
T PF13514_consen 821 EEELEELEAELAELLEQAGVEDEE 844 (1111)
T ss_pred HHHHHHHHHHHHHHHHhccCCCHH
Confidence 344455566666666666666543
No 189
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=56.73 E-value=49 Score=40.50 Aligned_cols=146 Identities=23% Similarity=0.305 Sum_probs=68.8
Q ss_pred cCCCchhHHHHHHHHHH------HHHHHHH-hHHHHHHhhccccccccccchhhHHHHHHH-HHHHHHHHHHHHHHHhhh
Q 002678 34 DTDNANQKEKFEADLKK------EIKKLQR-YRDQIKTWIQSSEIKDKKVSASYEQALVDA-RKLIEREMERFKICEKET 105 (893)
Q Consensus 34 ~a~n~nQKEKlE~DLKK------EIKKLQR-~RDQIKtW~~s~eIKDK~~~~~~~~~L~e~-RKlIE~~MErFK~vEKes 105 (893)
...|..|||-|-+-+|. -+.++-| +-+-++ |...+.||.-= +...+|.++ ++.+|++- ++|-
T Consensus 337 ~~~ddH~RDALAAA~kAY~~yk~kl~~vEr~~~~~g~-~~d~~rika~V---IrG~~l~eal~~~~e~~~------p~e~ 406 (652)
T COG2433 337 SVSDDHERDALAAAYKAYLAYKPKLEKVERKLPELGI-WKDVERIKALV---IRGYPLAEALSKVKEEER------PREK 406 (652)
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccc-hhhHHHHHHHe---ecCCcHHHHHHHHHhhhc------cccc
Confidence 56678899988887653 2223322 223334 78888888532 222345554 33333322 2222
Q ss_pred ccc--cccccccCCCC---CCCchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc----ccCCC-----CchhHHHH
Q 002678 106 KTK--AFSKEGLGQQP---KTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTV----KKGKT-----RPPRLTHL 171 (893)
Q Consensus 106 KtK--afSkEGL~~~~---k~DP~ekek~E~~~wL~~~IdeL~~QiE~~EaEiE~Ls~----KK~K~-----~~~r~~~l 171 (893)
.-+ -+.-++-.... ++...-+.-.+-..=|+.-|++|++.||.|+++++.+.. |.+|. ...||..|
T Consensus 407 ~~~~~~e~~ei~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L 486 (652)
T COG2433 407 EGTEEEERREITVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERL 486 (652)
T ss_pred cccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 222 11111111000 001111222233445666677777777777777776631 22222 23466667
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 002678 172 ETSITRHKAHIMKLELIL 189 (893)
Q Consensus 172 e~~ierhk~Hi~kLE~lL 189 (893)
+..++.-+--+..||.=|
T Consensus 487 ~~~L~e~~~~ve~L~~~l 504 (652)
T COG2433 487 EKELEEKKKRVEELERKL 504 (652)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666655555555554433
No 190
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=56.15 E-value=2e+02 Score=34.23 Aligned_cols=23 Identities=17% Similarity=0.239 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHH
Q 002678 41 KEKFEADLKKEIKKLQRYRDQIK 63 (893)
Q Consensus 41 KEKlE~DLKKEIKKLQR~RDQIK 63 (893)
-|||++++.|--..|--+|+||+
T Consensus 327 ~dklaee~qr~sd~LE~lrlql~ 349 (502)
T KOG0982|consen 327 ADKLAEEDQRSSDLLEALRLQLI 349 (502)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHH
Confidence 34444444444444444444443
No 191
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=55.78 E-value=1.7e+02 Score=30.33 Aligned_cols=73 Identities=21% Similarity=0.303 Sum_probs=39.1
Q ss_pred HhhhHHHhHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhHHHHHHhhccccccccccchhhHHHHHHHHHHHHH
Q 002678 14 VLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIER 93 (893)
Q Consensus 14 ~lKKV~EGve~Fd~i~eK~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~eIKDK~~~~~~~~~L~e~RKlIE~ 93 (893)
+.-.|-+=...|+.+|+.+..+-+...||+ ||+-|.+|| ++|..+...-+ .+-..|.+.|..+..
T Consensus 78 ~~~~I~~Y~~~f~syY~~L~~~id~~~~~~----~~~~i~~L~---~~i~~~q~~~~--------~~i~~L~~f~~~l~~ 142 (184)
T PF05791_consen 78 LNQDIINYNTTFQSYYDTLVEAIDQKDKED----LKEIIEDLQ---DQIQKNQDKVQ--------ALINELNDFKDKLQK 142 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT-HHH----HHHHHHHHH---HHHHHHHHHHH--------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCcccHHH----HHHHHHHHH---HHHHHHHHHHH--------HHHHHHHHHHHHHHH
Confidence 333444444556888887777664444554 445555543 45554443321 122356667777766
Q ss_pred HHHHHHHH
Q 002678 94 EMERFKIC 101 (893)
Q Consensus 94 ~MErFK~v 101 (893)
.-..||..
T Consensus 143 D~~~l~~~ 150 (184)
T PF05791_consen 143 DSRNLKTD 150 (184)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 66666554
No 192
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=55.49 E-value=3e+02 Score=29.68 Aligned_cols=78 Identities=17% Similarity=0.265 Sum_probs=49.3
Q ss_pred HhHHHHHHHHHHhhcCCC--chhHHHHHHHHHHHHHHHHHhHHHHHH-hhcc-ccccccccchhhHHHHHHHHHHHHHHH
Q 002678 20 EGVDVFDSIWNKVYDTDN--ANQKEKFEADLKKEIKKLQRYRDQIKT-WIQS-SEIKDKKVSASYEQALVDARKLIEREM 95 (893)
Q Consensus 20 EGve~Fd~i~eK~~~a~n--~nQKEKlE~DLKKEIKKLQR~RDQIKt-W~~s-~eIKDK~~~~~~~~~L~e~RKlIE~~M 95 (893)
.|++.+...++.+..... .++=+..+..|..|...-+++|.+..+ |--. ++.-. +.+...|..+|+.++.+.
T Consensus 22 ~g~~~l~~~l~~l~~~~~~~~~~L~e~~~~L~~E~~ed~~~r~~~g~~W~r~~S~~~~----~~l~~~l~~~~~~L~~A~ 97 (296)
T PF13949_consen 22 GGIEKLEESLQELPELSQEVRSILDEIEEMLDEEEREDEQLRAKYGERWTRPPSSELN----ASLRKELQKYREYLEQAS 97 (296)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTCGSS-HHHHC----HHHHHHHHHHHHHHHHHH
T ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCcHhhH----HHHHHHHHHHHHHHHHHH
Confidence 345555555555543332 334677889999999999999999864 6333 22222 346667777777777765
Q ss_pred HHHHHH
Q 002678 96 ERFKIC 101 (893)
Q Consensus 96 ErFK~v 101 (893)
+-.+.|
T Consensus 98 ~sD~~~ 103 (296)
T PF13949_consen 98 ESDSQL 103 (296)
T ss_dssp HHHHHH
T ss_pred hhHHHH
Confidence 554444
No 193
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=55.37 E-value=1.1e+02 Score=27.69 Aligned_cols=40 Identities=30% Similarity=0.392 Sum_probs=28.7
Q ss_pred hHHHHHHhhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002678 58 YRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKET 105 (893)
Q Consensus 58 ~RDQIKtW~~s~eIKDK~~~~~~~~~L~e~RKlIE~~MErFK~vEKes 105 (893)
+|.|+..|.+-.+ .+-.+..-+|..||.=+.|+|.+|.++
T Consensus 26 Lr~q~~~~~~ER~--------~L~ekne~Ar~rvEamI~RLk~leq~~ 65 (65)
T TIGR02449 26 LRAQEKTWREERA--------QLLEKNEQARQKVEAMITRLKALEQHT 65 (65)
T ss_pred HHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHhhhhhccCC
Confidence 5566666665432 222367789999999999999999753
No 194
>cd07593 BAR_MUG137_fungi The Bin/Amphiphysin/Rvs (BAR) domain of Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This subfamily is composed predominantly of uncharacterized fungal proteins with similarity to Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein (MUG137), which may play a role in meiosis and sporulation in fission yeast. MUG137 contains an N-terminal BAR domain and a C-terminal SH3 domain, similar to endophilins. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invol
Probab=54.56 E-value=1e+02 Score=33.13 Aligned_cols=88 Identities=15% Similarity=0.265 Sum_probs=71.5
Q ss_pred hhHHHHhhhHHHhHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhHHHHHHhhccccccccccchhhHHHHHHHH
Q 002678 9 GEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDAR 88 (893)
Q Consensus 9 ~EIDr~lKKV~EGve~Fd~i~eK~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~eIKDK~~~~~~~~~L~e~R 88 (893)
.||-+..|||.-=.-.||..-.|+..+... ...+|.+|+.--.|+-+..|..+.=+. .|+++. ...+...+
T Consensus 114 k~i~k~RKkLe~rRLdyD~~ksk~~kak~~--~~~~eeElr~Ae~kfees~E~a~~~M~--~i~~~e-----~e~~~~L~ 184 (215)
T cd07593 114 KEYHSARKKLESRRLAYDAALTKSQKAKKE--DSRLEEELRRAKAKYEESSEDVEARMV--AIKESE-----ADQYRDLT 184 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccc--chhHHHHHHHHHHHHHHHHHHHHHHHH--HHHhcC-----hHHHHHHH
Confidence 478889999999999999999999888544 357888888888899999998888777 466653 23888999
Q ss_pred HHHHHHHHHHHHHHhhh
Q 002678 89 KLIEREMERFKICEKET 105 (893)
Q Consensus 89 KlIE~~MErFK~vEKes 105 (893)
.+||.+|+-||.|=..+
T Consensus 185 ~lv~AQl~Yh~q~~e~L 201 (215)
T cd07593 185 DLLDAELDYHQQSLDVL 201 (215)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999885443
No 195
>cd07610 FCH_F-BAR The Extended FES-CIP4 Homology (FCH) or F-BAR (FCH and Bin/Amphiphysin/Rvs) domain, a dimerization module that binds and bends membranes. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. F-BAR domain containing proteins, also known as Pombe Cdc15 homology (PCH) family proteins, include Fes and Fer tyrosine kinases, PACSINs/Syndapins, FCHO, PSTPIP, CIP4-like proteins and srGAPs. Many members also contain an SH3 domain and play roles in endocytosis. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. These tubules have diameters larger than those observed with N-BARs. The F-BAR domains of some members such as NOSTRIN and Rgd1 are important for the subcellular localization of the protein.
Probab=54.28 E-value=1.6e+02 Score=29.53 Aligned_cols=21 Identities=24% Similarity=0.483 Sum_probs=14.0
Q ss_pred ChhhhhhhhhHHHHHHHhCCC
Q 002678 198 SPEQVNDVKDLLEDYVERNQD 218 (893)
Q Consensus 198 ~pe~V~~IKddieyYve~nqd 218 (893)
..+.|.-+++-+.+|++..-+
T Consensus 157 ~e~r~~~~~~~l~~~~~~~~~ 177 (191)
T cd07610 157 EEERLEILKDNLKNYINAIKE 177 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 366777777777777765433
No 196
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=54.06 E-value=25 Score=40.15 Aligned_cols=22 Identities=32% Similarity=0.385 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhHHHHHHhhcccc
Q 002678 47 DLKKEIKKLQRYRDQIKTWIQSSE 70 (893)
Q Consensus 47 DLKKEIKKLQR~RDQIKtW~~s~e 70 (893)
|+||.++ ..+|++.++|-.-.+
T Consensus 51 ~~Kk~~~--~qLrE~~et~~KE~~ 72 (370)
T PF02994_consen 51 DFKKDFK--NQLREQDETPEKELK 72 (370)
T ss_dssp ------------------------
T ss_pred HhhhhhH--HHHHHhhhhhhhhhh
Confidence 4455544 356888888865433
No 197
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.
Probab=53.66 E-value=22 Score=32.40 Aligned_cols=58 Identities=19% Similarity=0.388 Sum_probs=34.7
Q ss_pred chhhhHHHHhhhHHHhHHHHHHH-HHHhhcCCCchhHHHHHHHHHHHHHHHHHhHHHHH
Q 002678 6 KLQGEIDRVLKKVQEGVDVFDSI-WNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIK 63 (893)
Q Consensus 6 KLQ~EIDr~lKKV~EGve~Fd~i-~eK~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQIK 63 (893)
+++.++-.++|.+.+.|..+..+ .....+...--++|||-.|++..++.+|+.-..+.
T Consensus 37 ~~~~~~~~l~k~~~~~l~~l~~~~~~~~~~~~~k~~~~KL~~df~~~l~~fq~~q~~~~ 95 (102)
T PF14523_consen 37 QLIQKTNQLIKEISELLKKLNSLSSDRSNDRQQKLQREKLSRDFKEALQEFQKAQRRYA 95 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555666666666555554 11111111224699999999999999998766553
No 198
>PF06798 PrkA: PrkA serine protein kinase C-terminal domain; InterPro: IPR010650 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry is found at the C terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=53.50 E-value=3.5e+02 Score=29.86 Aligned_cols=43 Identities=9% Similarity=0.279 Sum_probs=26.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhh-CCC-CChhhhhhhhhHHHHHHH
Q 002678 166 PRLTHLETSITRHKAHIMKLELILRLLD-NDE-LSPEQVNDVKDLLEDYVE 214 (893)
Q Consensus 166 ~r~~~le~~ierhk~Hi~kLE~lLRlLd-N~~-l~pe~V~~IKddieyYve 214 (893)
.-.+.|...|+++-| ..++-+++.+. .-. .|.+ ++++++..|+
T Consensus 191 ~~~e~Lr~~iEkkL~--~d~~~~~~~~t~~~k~~d~e----~~~~~~~~i~ 235 (254)
T PF06798_consen 191 TSYERLREAIEKKLF--SDVKDLIKIITESSKTPDKE----QQRKIDEVIE 235 (254)
T ss_pred hhhHHHHHHHHHHHH--HHHHHHHHhcchhccCCCHH----HHHHHHHHHH
Confidence 345567788888887 56788888776 333 3444 4444455554
No 199
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=53.41 E-value=4.4 Score=49.42 Aligned_cols=51 Identities=22% Similarity=0.225 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhhhcccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002678 142 LESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLL 192 (893)
Q Consensus 142 L~~QiE~~EaEiE~Ls~KK~K~~~~r~~~le~~ierhk~Hi~kLE~lLRlL 192 (893)
++..+..||.|-..|..+......+++..|+..++..+.-..+||.-.+..
T Consensus 457 l~erl~rLe~ENk~Lk~~~e~~~~e~~~~L~~~Leda~~~~~~Le~~~~~~ 507 (713)
T PF05622_consen 457 LRERLLRLEHENKRLKEKQEESEEEKLEELQSQLEDANRRKEKLEEENREA 507 (713)
T ss_dssp ---------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555554444222222223456666666665555566666655543
No 200
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=53.27 E-value=8.9 Score=33.10 Aligned_cols=51 Identities=18% Similarity=0.393 Sum_probs=27.2
Q ss_pred HHHHHHhHHHHHHhhcccccc-ccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 002678 52 IKKLQRYRDQIKTWIQSSEIK-DKKVSASYEQALVDARKLIEREMERFKICEKETKTKA 109 (893)
Q Consensus 52 IKKLQR~RDQIKtW~~s~eIK-DK~~~~~~~~~L~e~RKlIE~~MErFK~vEKesKtKa 109 (893)
..++++--+.+..|+...+-+ ... .....-.-|+..|++|+.++++++.+.
T Consensus 3 ~~~f~~~~~~l~~Wl~~~e~~l~~~-------~~~~~~~~~~~~~~~~~~~~~ei~~~~ 54 (105)
T PF00435_consen 3 LQQFQQEADELLDWLQETEAKLSSS-------EPGSDLEELEEQLKKHKELQEEIESRQ 54 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCSC-------THSSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCC-------CCCCCHHHHHHHHHHHhhhhhHHHHHH
Confidence 344455555666666654322 111 012223456677778888887776543
No 201
>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle.
Probab=52.90 E-value=1.6e+02 Score=33.73 Aligned_cols=53 Identities=28% Similarity=0.346 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChh
Q 002678 130 ETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELSPE 200 (893)
Q Consensus 130 E~~~wL~~~IdeL~~QiE~~EaEiE~Ls~KK~K~~~~r~~~le~~ierhk~Hi~kLE~lLRlLdN~~l~pe 200 (893)
+..--|+.-|++|++++-.+|.|++. .-.+.+|-.+|-.+|--+|+...||.+
T Consensus 175 D~v~LLqkk~~~l~~~l~~~~~eL~~------------------~~k~L~faqekn~LlqslLddaniD~~ 227 (323)
T PF08537_consen 175 DRVILLQKKIDELEERLNDLEKELEI------------------TKKDLKFAQEKNALLQSLLDDANIDSE 227 (323)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHhhhcccHH
Confidence 44556677777777777777777544 445666777777777778887777764
No 202
>cd07658 F-BAR_NOSTRIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Nitric Oxide Synthase TRaffic INducer (NOSTRIN). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Nitric Oxide Synthase TRaffic INducer (NOSTRIN) is expressed in endothelial and epithelial cells and is involved in the regulation, trafficking and targeting of endothelial NOS (eNOS). NOSTRIN facilitates the endocytosis of eNOS by coordinating the functions of dynamin and the Wiskott-Aldrich syndrome protein (WASP). Increased expression of NOSTRIN may be correlated to preeclampsia. NOSTRIN contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. The F-BAR domain of NOSTRIN is necessary and sufficient fo
Probab=52.46 E-value=3.1e+02 Score=29.59 Aligned_cols=172 Identities=16% Similarity=0.180 Sum_probs=0.0
Q ss_pred ccchhhhHHHHhhhHHHhHHHHHHHHHHhhcCCC--chhHHHHHHHHHHHH-HHHHHhHHH-------HH--------Hh
Q 002678 4 SRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDN--ANQKEKFEADLKKEI-KKLQRYRDQ-------IK--------TW 65 (893)
Q Consensus 4 ~RKLQ~EIDr~lKKV~EGve~Fd~i~eK~~~a~n--~nQKEKlE~DLKKEI-KKLQR~RDQ-------IK--------tW 65 (893)
.++|+.=..+..|.+..+.-.|...|+.|..... +++.+.+-..|..|| +.|..+++. |+ .|
T Consensus 39 AK~L~kLa~k~~k~~~~~~Gtl~~aw~~~~~e~e~~a~~H~~la~~L~~ev~~~l~~~~~~~~k~rK~~~~~~~k~qk~~ 118 (239)
T cd07658 39 AKGLSKLSGKLSKASKSVSGTLSSAWTCVAEEMESEADIHRNLGSALTEEAIKPLRQVLDEQHKTRKPVENEVDKAAKLL 118 (239)
T ss_pred HHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhccc-----cccccccCCCCCCCchHHhHHHHHHHHHHHHH
Q 002678 66 IQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTK-----AFSKEGLGQQPKTDPKEKAKSETRDWLNNLVS 140 (893)
Q Consensus 66 ~~s~eIKDK~~~~~~~~~L~e~RKlIE~~MErFK~vEKesKtK-----afSkEGL~~~~k~DP~ekek~E~~~wL~~~Id 140 (893)
...-. .+...+|..+. ++|+.|+..+.- .++++-+-...+.+..-..|.... |...+.
T Consensus 119 ~~~~~------------~~~k~kk~y~~---~~kE~e~a~~~~~~~~~~~~~~~~~~~~~k~~~~~~k~~~K--l~~k~~ 181 (239)
T cd07658 119 TDWRS------------EQIKVKKKLHG---LARENEKLQDQVEDNKQSCTKQKMLNKLKKSAEVQDKEDEK--LEAKRK 181 (239)
T ss_pred HHHHH------------HHHHHHHHHHH---HHHHHHHHHHHHHHhhhhhhHHHHHhhhccccccchhhHHH--HHHHHH
Q ss_pred HHHHHHHHHHHHHhhhhcccCCCCchhHHHHHH----HHHHHHHHHHHHHHHHHhhhCCCCChhhhhhhhhHHHHH
Q 002678 141 ELESQIDSFEAELEGLTVKKGKTRPPRLTHLET----SITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDY 212 (893)
Q Consensus 141 eL~~QiE~~EaEiE~Ls~KK~K~~~~r~~~le~----~ierhk~Hi~kLE~lLRlLdN~~l~pe~V~~IKddieyY 212 (893)
..+..++..|.+++.. ++.|+. +++.++-.+.+++.+-. +.|.-+|+-+.-|
T Consensus 182 ka~~~~~k~e~~y~~~-----------~~~l~~~~~~~~~~~~~~~~~~Q~~E~---------~rl~~~k~~l~~y 237 (239)
T cd07658 182 KGEESRLKAENEYYTC-----------CVRLERLRLEWESALRKGLNQYESLEE---------ERLQHLKHSLSQY 237 (239)
T ss_pred HHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHh
No 203
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=52.39 E-value=4.5e+02 Score=31.68 Aligned_cols=23 Identities=17% Similarity=0.250 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 002678 129 SETRDWLNNLVSELESQIDSFEA 151 (893)
Q Consensus 129 ~E~~~wL~~~IdeL~~QiE~~Ea 151 (893)
.++..=|.++..+|+...+.++.
T Consensus 276 ~~~~~~l~d~~~~l~~~~~~l~~ 298 (563)
T TIGR00634 276 GNALTEVEEATRELQNYLDELEF 298 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCC
Confidence 34556667777777776555543
No 204
>PF14182 YgaB: YgaB-like protein
Probab=52.29 E-value=73 Score=29.74 Aligned_cols=31 Identities=16% Similarity=0.404 Sum_probs=22.0
Q ss_pred HHHHHHhHHHHHHhhccccccccccchhhHHHHHHHHHHHHHHHHH
Q 002678 52 IKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMER 97 (893)
Q Consensus 52 IKKLQR~RDQIKtW~~s~eIKDK~~~~~~~~~L~e~RKlIE~~MEr 97 (893)
.++|...|+.|.. +...|.+-++..|.++|.
T Consensus 39 ea~l~~i~~EI~~---------------mkk~Lk~Iq~~Fe~QTee 69 (79)
T PF14182_consen 39 EAELHSIQEEISQ---------------MKKELKEIQRVFEKQTEE 69 (79)
T ss_pred HHhHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHH
Confidence 3567777777653 223788888998888875
No 205
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=52.10 E-value=1.8e+02 Score=32.38 Aligned_cols=27 Identities=30% Similarity=0.363 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002678 131 TRDWLNNLVSELESQIDSFEAELEGLT 157 (893)
Q Consensus 131 ~~~wL~~~IdeL~~QiE~~EaEiE~Ls 157 (893)
...+....|++|+.+|..|++|++.|+
T Consensus 194 ei~~~re~i~el~e~I~~L~~eV~~L~ 220 (258)
T PF15397_consen 194 EIVQFREEIDELEEEIPQLRAEVEQLQ 220 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556667778888888888888887763
No 206
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=51.86 E-value=3.1e+02 Score=29.08 Aligned_cols=41 Identities=7% Similarity=0.256 Sum_probs=20.0
Q ss_pred HhhhHHHhHH-HHHHHHHHhhcCCCch-hHHHHHHHHHHHHHHHHH
Q 002678 14 VLKKVQEGVD-VFDSIWNKVYDTDNAN-QKEKFEADLKKEIKKLQR 57 (893)
Q Consensus 14 ~lKKV~EGve-~Fd~i~eK~~~a~n~n-QKEKlE~DLKKEIKKLQR 57 (893)
+|+||..-|. .++++.+|+++ +. -=+-+..|+..+|.++.+
T Consensus 3 if~Rl~~iv~a~~n~~~dk~ED---P~~~l~q~irem~~~l~~ar~ 45 (219)
T TIGR02977 3 IFSRFADIVNSNLNALLDKAED---PEKMIRLIIQEMEDTLVEVRT 45 (219)
T ss_pred HHHHHHHHHHHHHHHHHHhccC---HHHHHHHHHHHHHHHHHHHHH
Confidence 3555544443 34556666654 33 334455555555554443
No 207
>cd09238 V_Alix_like_1 Protein-interacting V-domain of an uncharacterized family of the V_Alix_like superfamily. This domain family is comprised of uncharacterized plant proteins. It belongs to the V_Alix_like superfamily which includes the V-shaped (V) domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X), (His-Domain) type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. Alix, HD-PTP, Bro1, a
Probab=51.64 E-value=2.8e+02 Score=31.42 Aligned_cols=16 Identities=38% Similarity=0.480 Sum_probs=10.0
Q ss_pred hhhhhhhhhHHHHHHH
Q 002678 199 PEQVNDVKDLLEDYVE 214 (893)
Q Consensus 199 pe~V~~IKddieyYve 214 (893)
.+-|..++..++.||.
T Consensus 322 ~~~~~~l~~~~~~fv~ 337 (339)
T cd09238 322 QEAVRRLKQECEDFVM 337 (339)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3455567777777764
No 208
>cd07602 BAR_RhoGAP_OPHN1-like The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin1-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to oligophrenin1 (OPHN1). Members contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and a Rho GAP domain. Some members contain a C-terminal SH3 domain. Vertebrates harbor at least three Rho GAPs in this subfamily including OPHN1, GTPase Regulator Associated with Focal adhesion kinase (GRAF), GRAF2, and an uncharacterized protein called GAP10-like. OPHN1, GRAF and GRAF2 show GAP activity towards RhoA and Cdc42. In addition, OPHN1 is active towards Rac. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of OPHN1
Probab=51.48 E-value=3.4e+02 Score=29.24 Aligned_cols=47 Identities=15% Similarity=0.312 Sum_probs=27.5
Q ss_pred chhHHHHHHH--HHHHHHHHHHHHHHHHhhhCCCCChhhhhhhhhHHHHHHH
Q 002678 165 PPRLTHLETS--ITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVE 214 (893)
Q Consensus 165 ~~r~~~le~~--ierhk~Hi~kLE~lLRlLdN~~l~pe~V~~IKddieyYve 214 (893)
+.-+++.+.. ..|+.||...|+.++.+=. |..-.--+|-|-|--|+.
T Consensus 139 ~~~~~ea~~~l~~~r~~f~~~~l~Yv~~l~~---vq~rKkfefle~ll~~m~ 187 (207)
T cd07602 139 ENQLQEADAQLDMERRNFHQASLEYVFKLQE---VQERKKFEFVETLLSFMY 187 (207)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 4445555554 4899999999999986421 222222235555555554
No 209
>PF05082 Rop-like: Rop-like; InterPro: IPR007774 This family contains several uncharacterised bacterial proteins. These proteins are found in nitrogen fixation operons, so are likely to play a role in this process.; PDB: 3CSX_A 2JS5_B.
Probab=51.45 E-value=16 Score=32.85 Aligned_cols=19 Identities=53% Similarity=0.656 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHhHHHHHH
Q 002678 46 ADLKKEIKKLQRYRDQIKT 64 (893)
Q Consensus 46 ~DLKKEIKKLQR~RDQIKt 64 (893)
.+||||||||+|.=-|+|.
T Consensus 5 ~eLk~evkKL~~~A~~~km 23 (66)
T PF05082_consen 5 EELKKEVKKLNRKATQAKM 23 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5799999999998888886
No 210
>PF11166 DUF2951: Protein of unknown function (DUF2951); InterPro: IPR021337 This family of proteins has no known function. It has a highly conserved sequence.
Probab=51.42 E-value=41 Score=32.35 Aligned_cols=57 Identities=23% Similarity=0.257 Sum_probs=40.0
Q ss_pred hhHHHHhhhHHHhHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHh-HHHHHHhhcc
Q 002678 9 GEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRY-RDQIKTWIQS 68 (893)
Q Consensus 9 ~EIDr~lKKV~EGve~Fd~i~eK~~~a~n~nQKEKlE~DLKKEIKKLQR~-RDQIKtW~~s 68 (893)
..|...|-.|.+|+..-+.+++|+.-+-..=+|| -++-+|+||.-+- =-+||.|+-+
T Consensus 21 k~i~~~L~~Ik~gq~~qe~v~~kld~tlD~i~re---Re~dee~k~~n~Knir~~KmwilG 78 (98)
T PF11166_consen 21 KTIFNKLDEIKDGQHDQELVNQKLDRTLDEINRE---REEDEENKKKNDKNIRDIKMWILG 78 (98)
T ss_pred HHHHHHHHHHHHhHhhHHHHHHHHHhhHHHHHHH---HHHHHHHHHHHHhhHHHHHHHHHH
Confidence 4678888999999999999999996554444555 3445555555433 3468999754
No 211
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=51.28 E-value=53 Score=38.29 Aligned_cols=26 Identities=23% Similarity=0.321 Sum_probs=22.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHH
Q 002678 165 PPRLTHLETSITRHKAHIMKLELILR 190 (893)
Q Consensus 165 ~~r~~~le~~ierhk~Hi~kLE~lLR 190 (893)
-+|--++++.+|-.+-||.|||+.+-
T Consensus 345 yERaRdIqEalEscqtrisKlEl~qq 370 (455)
T KOG3850|consen 345 YERARDIQEALESCQTRISKLELQQQ 370 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46888899999999999999998765
No 212
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=51.10 E-value=2.6e+02 Score=29.45 Aligned_cols=22 Identities=9% Similarity=0.152 Sum_probs=11.3
Q ss_pred hHHHHhhhHHHhHHHHHHHHHH
Q 002678 10 EIDRVLKKVQEGVDVFDSIWNK 31 (893)
Q Consensus 10 EIDr~lKKV~EGve~Fd~i~eK 31 (893)
.+.++|.++.+-.+-+..++.+
T Consensus 59 ~l~~~l~~~a~~~~~~~~~~~~ 80 (216)
T cd07627 59 SLSDLLAALAEVQKRIKESLER 80 (216)
T ss_pred HhHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555544
No 213
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=50.98 E-value=65 Score=30.35 Aligned_cols=44 Identities=14% Similarity=0.280 Sum_probs=38.7
Q ss_pred hhhhHHHHhhhHHHhHHHHHHHHHHhhcCCCch-hHHHHHHHHHH
Q 002678 7 LQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNAN-QKEKFEADLKK 50 (893)
Q Consensus 7 LQ~EIDr~lKKV~EGve~Fd~i~eK~~~a~n~n-QKEKlE~DLKK 50 (893)
++.|||++=+|+.....-.+.|-.|+....-+. +|+.+|.++.-
T Consensus 3 V~~eId~lEekl~~cr~~le~ve~rL~~~eLs~e~R~~lE~E~~~ 47 (85)
T PF15188_consen 3 VAKEIDGLEEKLAQCRRRLEAVESRLRRRELSPEARRSLEKELNE 47 (85)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHH
Confidence 578999999999999999999999999998766 89999966543
No 214
>cd07600 BAR_Gvp36 The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Golgi vesicle protein of 36 kDa and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Proteomic analysis shows that Golgi vesicle protein of 36 kDa (Gvp36) may be involved in vesicular trafficking and nutritional adaptation. A Saccharomyces cerevisiae strain deficient in Gvp36 shows defects in growth, in actin cytoskeleton polarization, in endocytosis, in vacuolar biogenesis, and in the cell cycle. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=50.97 E-value=2.7e+02 Score=30.52 Aligned_cols=43 Identities=16% Similarity=0.202 Sum_probs=28.3
Q ss_pred hHHHHhhhHHHhHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhH
Q 002678 10 EIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYR 59 (893)
Q Consensus 10 EIDr~lKKV~EGve~Fd~i~eK~~~a~n~nQKEKlE~DLKKEIKKLQR~R 59 (893)
.+=.+.+||.+....||..-. .+==++|+.-|-++||+.|+.|
T Consensus 111 ~~g~a~~kIa~ar~~~D~~I~-------~~Fl~pL~~~L~~d~k~i~k~R 153 (242)
T cd07600 111 KYSDAEEKIAEARLEQDQLIQ-------KEFNAKLRETLNTSFQKAHKAR 153 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 344667777777777776443 2224577777777778877777
No 215
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=50.83 E-value=5.1e+02 Score=31.05 Aligned_cols=51 Identities=22% Similarity=0.294 Sum_probs=31.9
Q ss_pred hHHHhHHHHHHHHHHhhcCCC-chhHHHHHHHHHHHHHHHHHhHHHHHHhhc
Q 002678 17 KVQEGVDVFDSIWNKVYDTDN-ANQKEKFEADLKKEIKKLQRYRDQIKTWIQ 67 (893)
Q Consensus 17 KV~EGve~Fd~i~eK~~~a~n-~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~ 67 (893)
.+.|-+..|+++...+..... ...-+.+-...+.+|..|++-=..++.+..
T Consensus 224 ~~~el~~~~~~l~~~~~~~~~~~~~~~~~i~~a~~~i~~L~~~l~~l~~~~~ 275 (582)
T PF09731_consen 224 EVQELVSIFNDLIESINEGNLSESDLNSLIAHAKERIDALQKELAELKEEEE 275 (582)
T ss_pred hHHHHHHhccchhhhhccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346667777777766655544 445566777777777777764444555443
No 216
>PF03114 BAR: BAR domain; InterPro: IPR004148 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. ; GO: 0005515 protein binding, 0005737 cytoplasm; PDB: 4AVM_A 2D4C_C 1X03_A 1X04_A 2RND_A 2RMY_A 2FIC_A 2C08_A 2Z0V_A 3SOG_A ....
Probab=50.78 E-value=86 Score=31.23 Aligned_cols=87 Identities=18% Similarity=0.251 Sum_probs=55.4
Q ss_pred hhHHHHhhhHHHhHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhHHHHHHhhccccccccccchhhHHHH-HHH
Q 002678 9 GEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQAL-VDA 87 (893)
Q Consensus 9 ~EIDr~lKKV~EGve~Fd~i~eK~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~eIKDK~~~~~~~~~L-~e~ 87 (893)
.+|.+..||...=...||...+|+........+..-|.+|.+--.++..++++++..+..= -++. ..-| .-.
T Consensus 131 ~~i~~~~kkr~~~~ldyd~~~~k~~k~~~~~~~~~~~~~l~~a~~~f~~~~~~l~~~l~~l--~~~~-----~~~l~~~l 203 (229)
T PF03114_consen 131 KEIKKLIKKREKKRLDYDSARSKLEKLRKKKSKSSKEEKLEEAKEEFEALNEELKEELPKL--FAKR-----QDILEPCL 203 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCHTTSSBTHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHCH-----HHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH-----HHHHHHHH
Confidence 4677777788888888888888887765433332227777777788888888888877642 2221 0123 444
Q ss_pred HHHHHHHHHHHHHHH
Q 002678 88 RKLIEREMERFKICE 102 (893)
Q Consensus 88 RKlIE~~MErFK~vE 102 (893)
+.+|+.++.=|+.|-
T Consensus 204 ~~~i~~q~~~~~~~~ 218 (229)
T PF03114_consen 204 QSFIEAQLQYFQQLY 218 (229)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 556666666665543
No 217
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=50.70 E-value=4.2e+02 Score=31.93 Aligned_cols=19 Identities=26% Similarity=0.293 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 002678 138 LVSELESQIDSFEAELEGL 156 (893)
Q Consensus 138 ~IdeL~~QiE~~EaEiE~L 156 (893)
.+.++...++....+++.+
T Consensus 267 ~~~~~~~~l~~~~~~l~d~ 285 (563)
T TIGR00634 267 SLRELAEQVGNALTEVEEA 285 (563)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 3444444445544454444
No 218
>cd07673 F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 2 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. The specific function of FCH domain Only 2 (FCHO2) is still unknown. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO1 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=50.48 E-value=73 Score=34.88 Aligned_cols=80 Identities=20% Similarity=0.223 Sum_probs=54.3
Q ss_pred hhhhHHHHhhhHHHhHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHh----HHHHHHhhccc--cccccccchhh
Q 002678 7 LQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRY----RDQIKTWIQSS--EIKDKKVSASY 80 (893)
Q Consensus 7 LQ~EIDr~lKKV~EGve~Fd~i~eK~~~a~n~nQKEKlE~DLKKEIKKLQR~----RDQIKtW~~s~--eIKDK~~~~~~ 80 (893)
-+.||||+..|+.-.-+.|....+++... +.+|+.+++.-.+++|++ -+.+|.++..- .+.. +-.++
T Consensus 155 t~k~leK~~~k~~ka~~~Y~~~v~~l~~~-----~~~~~~~m~~~~~~~Q~~Ee~Ri~~~k~~l~~y~~~~s~--~~~~~ 227 (269)
T cd07673 155 TQREIEKAAVKSKKATESYKLYVEKYALA-----KADFEQKMTETAQKFQDIEETHLIRIKEIIGSYSNSVKE--IHIQI 227 (269)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hcChH
Confidence 46788999888888888888777777633 558999999988888876 35667666442 2221 22334
Q ss_pred HHHHHHHHHHHHH
Q 002678 81 EQALVDARKLIER 93 (893)
Q Consensus 81 ~~~L~e~RKlIE~ 93 (893)
.....+-|+.||.
T Consensus 228 ~~~~e~ir~~le~ 240 (269)
T cd07673 228 GQVHEEFINNMAN 240 (269)
T ss_pred HHHHHHHHHHHHh
Confidence 4466666776664
No 219
>PF00509 Hemagglutinin: Haemagglutinin; InterPro: IPR001364 Haemagglutinin (HA) is one of two main surface fusion glycoproteins embedded in the envelope of influenza viruses, the other being neuraminidase (NA). There are sixteen known HA subtypes (H1-H16) and nine NA subtypes (N1-N9), which together are used to classify influenza viruses (e.g. H5N1). The antigenic variations in HA and NA enable the virus to evade host antibodies made to previous influenza strains, accounting for recurrent influenza epidemics []. The HA glycoprotein is present in the viral membrane as a single polypeptide (HA0), which must be cleaved by the host's trypsin-like proteases to produce two peptides (HA1 and HA2) in order for the virus to be infectious. Once HA0 is cleaved, the newly exposed N-terminal of the HA2 peptide then acts to fuse the viral envelope to the cellular membrane of the host cell, which allows the viral negative-stranded RNA to infect the host cell. The type of host protease can influence the infectivity and pathogenicity of the virus. The haemagglutinin glycoprotein is a trimer containing three structurally distinct regions: a globular head consisting of anti-parallel beta-sheets that form a beta-sandwich with a jelly-roll fold (contains the receptor binding site and the HA1/HA2 cleavage site); a triple-stranded, coiled-coil, alpha-helical stalk; and a globular foot composed of anti-parallel beta-sheets [, ]. Each monomer consists of an intact HA0 polypeptide with the HA1 and HA2 regions linked by disulphide bonds. The N terminus of HA1 provides the central strand in the 5-stranded globular foot, while the rest of the HA1 chain makes its way to the 8-stranded globular head. HA2 provides two alpha helices, which form part of the triple-stranded coiled-coil that stabilises the trimer, its C terminus providing the remaining strands of the 5-stranded globular foot. This entry represents the entire haemagglutinin protein (HA0) consisting of both the HA1 and HA2 regions, as found in influenza A and B viruses.; GO: 0046789 host cell surface receptor binding, 0019064 viral envelope fusion with host membrane, 0019031 viral envelope; PDB: 2WR5_A 2IBX_A 2WR0_B 2WR1_C 2XN9_F 2WRF_I 3S11_E 3BT6_A 3SM5_E 2FK0_H ....
Probab=50.38 E-value=2.6 Score=50.12 Aligned_cols=54 Identities=24% Similarity=0.421 Sum_probs=40.8
Q ss_pred chhHHHHHHHHHHHHHHHH--HHHHHHHhhhCCC-CC--hhhhhhhhhHHHHHHHhCCCC
Q 002678 165 PPRLTHLETSITRHKAHIM--KLELILRLLDNDE-LS--PEQVNDVKDLLEDYVERNQDD 219 (893)
Q Consensus 165 ~~r~~~le~~ierhk~Hi~--kLE~lLRlLdN~~-l~--pe~V~~IKddieyYve~nqdd 219 (893)
+.||+.|++.++.+.--|- +. .||-+|+|+. || ...|..|-|-|..-|..|..|
T Consensus 402 e~Ri~~l~~~v~d~~~d~wsyna-ELlVlleN~~tld~~Ds~~~~L~ekvk~qL~~na~d 460 (550)
T PF00509_consen 402 EKRIDNLEKKVDDKIADVWSYNA-ELLVLLENQRTLDLHDSNVNNLYEKVKRQLRENAED 460 (550)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGTGEEE
T ss_pred HHHHHHHHHhhhccchhhhcccH-HHHHHhccccchhhhHHHHHHHHHHHHHHHhccchh
Confidence 4688999988877655443 33 4566888887 55 778889999999999988763
No 220
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=50.35 E-value=1.8e+02 Score=25.75 Aligned_cols=59 Identities=22% Similarity=0.466 Sum_probs=40.6
Q ss_pred hhHHHHhhhHHHhHHHHHHHHHHhhcCCCch--hHHHHHHHHHHHHHHH-HHhHHHHHHhhcc
Q 002678 9 GEIDRVLKKVQEGVDVFDSIWNKVYDTDNAN--QKEKFEADLKKEIKKL-QRYRDQIKTWIQS 68 (893)
Q Consensus 9 ~EIDr~lKKV~EGve~Fd~i~eK~~~a~n~n--QKEKlE~DLKKEIKKL-QR~RDQIKtW~~s 68 (893)
.||...+.+|.+-|+.+...+.++....... -+++++ +|-.||++| +.++..||.--..
T Consensus 10 ~~i~~~i~~i~~~~~~l~~l~~~~l~~~~~d~~~~~el~-~l~~~i~~~~~~~~~~lk~l~~~ 71 (103)
T PF00804_consen 10 QEIREDIDKIKEKLNELRKLHKKILSSPDQDSELKRELD-ELTDEIKQLFQKIKKRLKQLSKD 71 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999999999888743 233333 334444433 5566666664444
No 221
>PRK07720 fliJ flagellar biosynthesis chaperone; Validated
Probab=50.33 E-value=2.6e+02 Score=27.48 Aligned_cols=115 Identities=11% Similarity=0.085 Sum_probs=69.5
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHhhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCC
Q 002678 40 QKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQP 119 (893)
Q Consensus 40 QKEKlE~DLKKEIKKLQR~RDQIKtW~~s~eIKDK~~~~~~~~~L~e~RKlIE~~MErFK~vEKesKtKafSkEGL~~~~ 119 (893)
.+++.|...+.++-+.++..++...=+. .|.++|.-.+.++.. . ...|+
T Consensus 13 l~~~~ee~a~~~L~~a~~~~~~~~~~L~---------------~L~~~~~~~~~~~~~---~---------~~~g~---- 61 (146)
T PRK07720 13 LKENEKEKALGEYEEAVSRFEQVAEKLY---------------ELLKQKEDLEQAKEE---K---------LQSGL---- 61 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHH---H---------hhCCC----
Confidence 4788888888888888877776654332 455566555554433 0 12233
Q ss_pred CCCchH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 002678 120 KTDPKE-KAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELI 188 (893)
Q Consensus 120 k~DP~e-kek~E~~~wL~~~IdeL~~QiE~~EaEiE~Ls~KK~K~~~~r~~~le~~ierhk~Hi~kLE~l 188 (893)
++.+ .--..-...|.+.|......|..++.++|.....= -....+...++.+.+|+..+..+.|..
T Consensus 62 --~~~~l~~~~~fl~~L~~~i~~q~~~v~~~~~~ve~~r~~~-~ea~~~~k~~ekLker~~~~~~~~e~r 128 (146)
T PRK07720 62 --SIQEIRHYQQFVTNLERTIDHYQLLVMQAREQMNRKQQDL-TEKNIEVKKYEKMKEKKQEMFALEEKA 128 (146)
T ss_pred --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3322 34455777888888888888999999988752100 000112334777777776666555543
No 222
>KOG0260 consensus RNA polymerase II, large subunit [Transcription]
Probab=50.18 E-value=1.1e+02 Score=40.24 Aligned_cols=8 Identities=25% Similarity=0.343 Sum_probs=3.5
Q ss_pred Ccceeecc
Q 002678 273 PVATVIST 280 (893)
Q Consensus 273 ~~~~~~s~ 280 (893)
||+..+|+
T Consensus 1454 ~tsp~ysp 1461 (1605)
T KOG0260|consen 1454 PTSPNYSP 1461 (1605)
T ss_pred CCCCCCCC
Confidence 44444443
No 223
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=50.06 E-value=3.7e+02 Score=33.87 Aligned_cols=23 Identities=17% Similarity=0.507 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 002678 133 DWLNNLVSELESQIDSFEAELEGL 156 (893)
Q Consensus 133 ~wL~~~IdeL~~QiE~~EaEiE~L 156 (893)
+|.++ ++.++.+++.+.+-++.+
T Consensus 636 ~~~~E-L~~~~~~l~~l~~si~~l 658 (717)
T PF10168_consen 636 EFKKE-LERMKDQLQDLKASIEQL 658 (717)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHH
Confidence 34433 445666666666666655
No 224
>cd07610 FCH_F-BAR The Extended FES-CIP4 Homology (FCH) or F-BAR (FCH and Bin/Amphiphysin/Rvs) domain, a dimerization module that binds and bends membranes. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. F-BAR domain containing proteins, also known as Pombe Cdc15 homology (PCH) family proteins, include Fes and Fer tyrosine kinases, PACSINs/Syndapins, FCHO, PSTPIP, CIP4-like proteins and srGAPs. Many members also contain an SH3 domain and play roles in endocytosis. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. These tubules have diameters larger than those observed with N-BARs. The F-BAR domains of some members such as NOSTRIN and Rgd1 are important for the subcellular localization of the protein.
Probab=50.02 E-value=2.8e+02 Score=27.75 Aligned_cols=40 Identities=18% Similarity=0.424 Sum_probs=32.3
Q ss_pred HHHHhhhHHHhHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHH
Q 002678 11 IDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQ 56 (893)
Q Consensus 11 IDr~lKKV~EGve~Fd~i~eK~~~a~n~nQKEKlE~DLKKEIKKLQ 56 (893)
+|.+++++..|++.-+++-+=+ .+|-.+|.+--|.+.||-
T Consensus 2 ~~~l~~~~~~g~~~~~e~~~f~------keRa~iE~eYak~L~kLa 41 (191)
T cd07610 2 FELLEKRTELGLDLLKDLREFL------KKRAAIEEEYAKNLQKLA 41 (191)
T ss_pred chHHHHHHHhHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHH
Confidence 4788999999999999987776 457788888887777773
No 225
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=50.01 E-value=95 Score=32.89 Aligned_cols=28 Identities=14% Similarity=0.182 Sum_probs=13.1
Q ss_pred chhhhHHHHhhhHHHhHHHHHHHHHHhh
Q 002678 6 KLQGEIDRVLKKVQEGVDVFDSIWNKVY 33 (893)
Q Consensus 6 KLQ~EIDr~lKKV~EGve~Fd~i~eK~~ 33 (893)
||++.....++.|..--.-|+....++.
T Consensus 111 k~~k~~~~~~~~l~KaK~~Y~~~c~~~e 138 (236)
T cd07651 111 KLLKKKQDQEKYLEKAREKYEADCSKIN 138 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 4444444444444444445544444443
No 226
>PF13166 AAA_13: AAA domain
Probab=49.98 E-value=5.6e+02 Score=31.22 Aligned_cols=17 Identities=24% Similarity=0.317 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 002678 171 LETSITRHKAHIMKLEL 187 (893)
Q Consensus 171 le~~ierhk~Hi~kLE~ 187 (893)
++..+...+-+|..|+.
T Consensus 436 ~~~~~~~~~~~i~~l~~ 452 (712)
T PF13166_consen 436 AKEEIKKIEKEIKELEA 452 (712)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444444443
No 227
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=49.85 E-value=3.1e+02 Score=28.82 Aligned_cols=12 Identities=33% Similarity=0.609 Sum_probs=6.1
Q ss_pred chhhhHHHHhhh
Q 002678 6 KLQGEIDRVLKK 17 (893)
Q Consensus 6 KLQ~EIDr~lKK 17 (893)
+||..+|+.|++
T Consensus 37 ~L~e~Ld~~L~~ 48 (189)
T PF10211_consen 37 QLQEWLDKMLQQ 48 (189)
T ss_pred HHHHHHHHHHHH
Confidence 355555555544
No 228
>cd09236 V_AnPalA_UmRIM20_like Protein-interacting V-domains of Aspergillus nidulans PalA/RIM20, Ustilago maydis RIM20, and related proteins. This family belongs to the V_Alix_like superfamily which includes the V-shaped (V) domains of Bro1 and Rim20 from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Aspergillus nidulas PalA/RIM20 and Ustilago maydis RIM20, like Saccharomyces cerevisiae Rim20, participate in the response to the external pH via the Pal/Rim101 pathway; however, Saccharomyces cerevisiae Rim20 does not belong to this family. This pathway is a signaling cascade resulting in the activation of the transcription factor PacC/Rim101. The mammalian Alix V-domain (belonging to a different family) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. Aspergillus nidulas Pa
Probab=49.81 E-value=3e+02 Score=31.26 Aligned_cols=16 Identities=13% Similarity=0.287 Sum_probs=11.3
Q ss_pred hhhhhhhhhHHHHHHH
Q 002678 199 PEQVNDVKDLLEDYVE 214 (893)
Q Consensus 199 pe~V~~IKddieyYve 214 (893)
.+-|..++.+++.||.
T Consensus 336 ~~~~~~~~~~~~~fv~ 351 (353)
T cd09236 336 AKILSQFRDACKAWVY 351 (353)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3566678888888774
No 229
>cd09237 V_ScBro1_like Protein-interacting V-domain of Saccharomyces cerevisiae Bro1 and related domains. This family contains the V-shaped (V) domain of Saccharomyces cerevisiae Bro1, and related domains. It belongs to the V_Alix_like superfamily which also includes the V-domain of Saccharomyces cerevisiae Rim20 (also known as PalA), mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Bro1 interacts with the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in endosomal trafficking. The mammalian Alix V-domain (belonging to a different family) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. The Alix V-domain is also a dimerization domain. Bro1 also has an N-terminal Bro1-like domain, which binds Snf7, a component of the ESCRT-III complex, and a C-terminal proline-rich
Probab=49.81 E-value=4.3e+02 Score=29.92 Aligned_cols=46 Identities=9% Similarity=0.010 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhCCCCC----hhhhhhhhhHHHHHHH
Q 002678 169 THLETSITRHKAHIMKLELILRLLDNDELS----PEQVNDVKDLLEDYVE 214 (893)
Q Consensus 169 ~~le~~ierhk~Hi~kLE~lLRlLdN~~l~----pe~V~~IKddieyYve 214 (893)
.+-+..+++.+.=..+...|...|+-|.=- .+.|..++..++.||.
T Consensus 305 ~~R~~~l~~l~~ay~~y~el~~~l~~G~~FY~dL~~~~~~l~~~~~~fv~ 354 (356)
T cd09237 305 KLRKEFFEKLKKAYNSFKKFSAGLPKGLEFYDDLLKMAKDLAKNVQAFVN 354 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444444444444444454444444321 3445556666666663
No 230
>cd07599 BAR_Rvs167p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 167 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 167 (Rvs167p) and Schizosaccharomyces pombe Hob1 (homolog of Bin1). S. cerevisiae Rvs167p plays a role in regulation of the actin cytoskeleton, endocytosis, and sporulation. It forms a heterodimer with another BAR domain protein Rvs161p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. Rvs167p also interacts with the GTPase activating protein (GAP) Gyp5p, which is involved in ER to Golgi vesicle trafficking. BAR domains fo
Probab=49.70 E-value=1.6e+02 Score=30.73 Aligned_cols=27 Identities=33% Similarity=0.437 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHhhcc
Q 002678 42 EKFEADLKKEIKKLQRYRDQIKTWIQS 68 (893)
Q Consensus 42 EKlE~DLKKEIKKLQR~RDQIKtW~~s 68 (893)
|-++.++++-.+.|+++-++.|.|..+
T Consensus 5 ~~~~~~f~~~e~~~~kL~k~~k~y~~a 31 (216)
T cd07599 5 EELEKDFKSLEKSLKKLIEQSKAFRDS 31 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777788877765
No 231
>TIGR00255 conserved hypothetical protein TIGR00255. The apparent ortholog from Aquifex aeolicus as reported is split into two consecutive reading frames.
Probab=49.69 E-value=1.8e+02 Score=32.64 Aligned_cols=81 Identities=15% Similarity=0.286 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHhhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCC
Q 002678 42 EKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKT 121 (893)
Q Consensus 42 EKlE~DLKKEIKKLQR~RDQIKtW~~s~eIKDK~~~~~~~~~L~e~RKlIE~~MErFK~vEKesKtKafSkEGL~~~~k~ 121 (893)
++|..||..-+.+|..+-++|+.-. +..+..+|..+..+|+.+- +. .+
T Consensus 153 ~~L~~dl~~rl~~i~~~v~~i~~~~--------------p~~~~~~~~rL~~rl~el~--~~----------------~i 200 (291)
T TIGR00255 153 ENLKSDIVQRLDLIEREVKKVRSAM--------------PDILQWQRERLKARIEDLA--QE----------------FL 200 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc--------------hHHHHHHHHHHHHHHHHHh--cC----------------CC
Confidence 5788899999998888888887543 3378889999998888752 10 13
Q ss_pred CchHHhHHHHHHH-----HHHHHHHHHHHHHHHHHHHhh
Q 002678 122 DPKEKAKSETRDW-----LNNLVSELESQIDSFEAELEG 155 (893)
Q Consensus 122 DP~ekek~E~~~w-----L~~~IdeL~~QiE~~EaEiE~ 155 (893)
|+ +.--+|+.=| ++.=|+-|+..++.|..-++.
T Consensus 201 d~-~Rl~qEval~adK~DI~EEl~RL~sHl~~f~~~L~~ 238 (291)
T TIGR00255 201 DL-NRLEQEAALLAQRIDIAEEIDRLDSHVKEFYNILKK 238 (291)
T ss_pred CH-HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhc
Confidence 44 2333343333 344567788888888877765
No 232
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=49.62 E-value=1.2e+02 Score=28.72 Aligned_cols=24 Identities=42% Similarity=0.437 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhc
Q 002678 83 ALVDARKLIEREMERFKICEKETK 106 (893)
Q Consensus 83 ~L~e~RKlIE~~MErFK~vEKesK 106 (893)
.|...|.-|+..|+.|+.-|++.+
T Consensus 15 ~l~~kr~e~~~~~~~~~~~e~~L~ 38 (126)
T PF13863_consen 15 ALDTKREEIERREEQLKQREEELE 38 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666666666666555543
No 233
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=49.62 E-value=4e+02 Score=33.76 Aligned_cols=21 Identities=19% Similarity=0.265 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 002678 135 LNNLVSELESQIDSFEAELEG 155 (893)
Q Consensus 135 L~~~IdeL~~QiE~~EaEiE~ 155 (893)
.+..|.+.+++++.+-.++..
T Consensus 575 a~~~l~~a~~~~~~~i~~lk~ 595 (782)
T PRK00409 575 AQQAIKEAKKEADEIIKELRQ 595 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666543
No 234
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=49.59 E-value=4.5e+02 Score=34.52 Aligned_cols=26 Identities=19% Similarity=0.252 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcc
Q 002678 82 QALVDARKLIEREMERFKICEKETKT 107 (893)
Q Consensus 82 ~~L~e~RKlIE~~MErFK~vEKesKt 107 (893)
+.+.+++.-.+..|+..|+++|+-|-
T Consensus 248 ~ey~~~k~~~~r~k~~~r~l~k~~~p 273 (1072)
T KOG0979|consen 248 REYNAYKQAKDRAKKELRKLEKEIKP 273 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 36778888888889999999988653
No 235
>PF12729 4HB_MCP_1: Four helix bundle sensory module for signal transduction; InterPro: IPR024478 This entry represents a four-helix bundle that operates as a ubiquitous sensory module in prokaryotic signal-transduction, which is known as four-helix bundles methyl-accepting chemotaxis protein (4HB_MCP) domain. The 4HB_MCP is always found between two predicted transmembrane helices indicating that it detects only extracellular signals. In many cases the domain is associated with a cytoplasmic HAMP domain suggesting that most proteins carrying the bundle might share the mechanism of transmembrane signalling which is well-characterised in E coli chemoreceptors [].
Probab=49.48 E-value=2.3e+02 Score=26.62 Aligned_cols=15 Identities=27% Similarity=0.567 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHHH
Q 002678 84 LVDARKLIEREMERF 98 (893)
Q Consensus 84 L~e~RKlIE~~MErF 98 (893)
+.+.++.|+..|+.|
T Consensus 84 ~~~~~~~~~~~~~~~ 98 (181)
T PF12729_consen 84 IDEARAEIDEALEEY 98 (181)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 236
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=49.35 E-value=74 Score=38.83 Aligned_cols=55 Identities=11% Similarity=0.378 Sum_probs=37.9
Q ss_pred HHHHHHH------HHHHHHHHHHhHHHHHHhhccccccccccchhhHHHHHHHHHHHHHHHHHH
Q 002678 41 KEKFEAD------LKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERF 98 (893)
Q Consensus 41 KEKlE~D------LKKEIKKLQR~RDQIKtW~~s~eIKDK~~~~~~~~~L~e~RKlIE~~MErF 98 (893)
|++|+.+ .+.|.++|...=++...|+..++-.++. .|.++|.+.+++++.-+.|+
T Consensus 552 r~~L~~~~~~~~~t~ee~~~l~~~l~~~~~wL~~~~~~~~~---~~~~kl~eL~~~~~pi~~r~ 612 (653)
T PTZ00009 552 KNTLQDEKVKGKLSDSDKATIEKAIDEALEWLEKNQLAEKE---EFEHKQKEVESVCNPIMTKM 612 (653)
T ss_pred HHHHhhhhhhccCCHHHHHHHHHHHHHHHHHHhcCCchhHH---HHHHHHHHHHHHHHHHHHHH
Confidence 6777543 3455667777778888899876544443 67778888888888766553
No 237
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=49.14 E-value=5.4e+02 Score=30.82 Aligned_cols=26 Identities=42% Similarity=0.603 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002678 131 TRDWLNNLVSELESQIDSFEAELEGL 156 (893)
Q Consensus 131 ~~~wL~~~IdeL~~QiE~~EaEiE~L 156 (893)
-++.+++-|..|+.||+.+++|+..+
T Consensus 282 E~~~~~ee~~~l~~Qi~~l~~e~~d~ 307 (511)
T PF09787_consen 282 ERDHLQEEIQLLERQIEQLRAELQDL 307 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888999999999999888655
No 238
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=49.12 E-value=49 Score=33.66 Aligned_cols=35 Identities=17% Similarity=0.434 Sum_probs=19.4
Q ss_pred HHHHhhhHHHhHHHHHHHHHHhhcCCCchhHHHHHHHHHH
Q 002678 11 IDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKK 50 (893)
Q Consensus 11 IDr~lKKV~EGve~Fd~i~eK~~~a~n~nQKEKlE~DLKK 50 (893)
|++++.-....|+..-.-|+++ ..+++.|+.+|+.
T Consensus 4 i~~Im~~~gk~i~~~K~~~~~~-----~~e~~~~k~ql~~ 38 (155)
T PF06810_consen 4 IDKIMAENGKDIEAPKAKVDKV-----KEERDNLKTQLKE 38 (155)
T ss_pred HHHHHHHccCcHHHHHHHHHHH-----HHHHHHHHHHHHH
Confidence 5555555555555444444444 3356777766653
No 239
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=49.12 E-value=2.3e+02 Score=36.93 Aligned_cols=95 Identities=15% Similarity=0.125 Sum_probs=57.4
Q ss_pred chhHHHHHHHHHHHHHHHHHhHHHHHHhhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccCC
Q 002678 38 ANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQ 117 (893)
Q Consensus 38 ~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~eIKDK~~~~~~~~~L~e~RKlIE~~MErFK~vEKesKtKafSkEGL~~ 117 (893)
..|||++..++.+.|++--+.|.|-=.|+-..--|.|. +.-....+.-++++..|-+|.+-=+.+
T Consensus 705 ~~qkee~~~~~~~~I~~~~~~~~~~~~~~~~~~~k~~e---~~i~~~~~~~~~~~s~~~~iea~~~i~------------ 769 (1072)
T KOG0979|consen 705 DRQEEEYAASEAKKILDTEDMRIQSIRWHLELTDKHKE---IGIKEKNESSYMARSNKNNIEAERKIE------------ 769 (1072)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH---HHHHhhhhHHHHHHHHHHHHHHHHHHH------------
Confidence 66899999999999999999999999998776544433 111234444455555554432111110
Q ss_pred CCCCCchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002678 118 QPKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGL 156 (893)
Q Consensus 118 ~~k~DP~ekek~E~~~wL~~~IdeL~~QiE~~EaEiE~L 156 (893)
.-.....|++.+-+.|..+++....+++..
T Consensus 770 ---------~~e~~i~~~~~~~~~lk~a~~~~k~~a~~~ 799 (1072)
T KOG0979|consen 770 ---------KLEDNISFLEAREDLLKTALEDKKKEAAEK 799 (1072)
T ss_pred ---------HHHhHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 112244566666666666666666665554
No 240
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=48.92 E-value=5.5e+02 Score=30.82 Aligned_cols=13 Identities=15% Similarity=0.309 Sum_probs=7.7
Q ss_pred HHHHHHhhhCCCC
Q 002678 185 LELILRLLDNDEL 197 (893)
Q Consensus 185 LE~lLRlLdN~~l 197 (893)
+..|-..|+++.-
T Consensus 414 ~~~l~~~l~~~~~ 426 (582)
T PF09731_consen 414 VDALKSALDSGNA 426 (582)
T ss_pred HHHHHHHHHcCCC
Confidence 4445666777743
No 241
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=48.88 E-value=4.9e+02 Score=30.26 Aligned_cols=37 Identities=16% Similarity=0.293 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhCCCCCh-hhhhhhhhH
Q 002678 172 ETSITRHKAHIMKLELILRLLDNDELSP-EQVNDVKDL 208 (893)
Q Consensus 172 e~~ierhk~Hi~kLE~lLRlLdN~~l~p-e~V~~IKdd 208 (893)
...+++..-.|.+||.|.|.|.-++-++ ..+.+++..
T Consensus 291 ~k~~~~lq~kiq~LekLcRALq~ernel~~~~~~~e~~ 328 (391)
T KOG1850|consen 291 DKEYETLQKKIQRLEKLCRALQTERNELNKKLEDLEAQ 328 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc
Confidence 3455677888999999999999888663 444444433
No 242
>PF14282 FlxA: FlxA-like protein
Probab=48.82 E-value=31 Score=32.89 Aligned_cols=57 Identities=18% Similarity=0.327 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcccC---CCCchhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002678 136 NNLVSELESQIDSFEAELEGLTVKKG---KTRPPRLTHLETSITRHKAHIMKLELILRLL 192 (893)
Q Consensus 136 ~~~IdeL~~QiE~~EaEiE~Ls~KK~---K~~~~r~~~le~~ierhk~Hi~kLE~lLRlL 192 (893)
...|..|++||..|..+|..|...+. +.+..++..|+..|.-..-+|..|..-..--
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~~~~ 77 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQSQQAEQ 77 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46799999999999999998865332 2234566777777777777777766554433
No 243
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton]
Probab=48.74 E-value=59 Score=39.54 Aligned_cols=43 Identities=28% Similarity=0.258 Sum_probs=23.9
Q ss_pred hHHHhHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhHHH
Q 002678 17 KVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQ 61 (893)
Q Consensus 17 KV~EGve~Fd~i~eK~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQ 61 (893)
++.| .+.+|+--.+++.--+.--.+- |..|+.|+|+=+|++.|
T Consensus 249 ~~l~-~d~~d~~~~~~qlP~~evl~~~-e~~l~Ae~kqekRlq~~ 291 (645)
T KOG0681|consen 249 KILE-MDYYDENRNYFQLPYTEVLAEV-ELALTAEKKQEKRLQEQ 291 (645)
T ss_pred HHhh-hhhhhccceEEecccccccchh-hhhccHHHHHHHHHHHH
Confidence 3444 5555554444443333222221 46688888888898888
No 244
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=48.25 E-value=6.5e+02 Score=31.89 Aligned_cols=137 Identities=18% Similarity=0.160 Sum_probs=66.7
Q ss_pred HHHHHHhHHHHHHhhccccccccccchhhHHHHHHHHHHHHHHHH----HHHHHHhhhccccccccccCCCCCCCchHHh
Q 002678 52 IKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREME----RFKICEKETKTKAFSKEGLGQQPKTDPKEKA 127 (893)
Q Consensus 52 IKKLQR~RDQIKtW~~s~eIKDK~~~~~~~~~L~e~RKlIE~~ME----rFK~vEKesKtKafSkEGL~~~~k~DP~eke 127 (893)
-++++.+++||.+--+..+ .+...=+.+|.+|. .+--++++.++..-+.|-+.. .-.+
T Consensus 502 ~~ek~~l~~~i~~l~~~~~------------~~~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk------~~~e 563 (698)
T KOG0978|consen 502 REEKSKLEEQILTLKASVD------------KLELKIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKK------KAQE 563 (698)
T ss_pred HHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHH------HHHH
Confidence 4566778888887666544 44444455566553 334455566655555554432 1122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhhhhhhh
Q 002678 128 KSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKD 207 (893)
Q Consensus 128 k~E~~~wL~~~IdeL~~QiE~~EaEiE~Ls~KK~K~~~~r~~~le~~ierhk~Hi~kLE~lLRlLdN~~l~pe~V~~IKd 207 (893)
-..-.+||+--.+..+.+++.++..+..+.. .++.+.....|..--+.+|-..|+.+.+...-..-...+.+
T Consensus 564 ~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~--------ele~~~~k~~rleEE~e~L~~kle~~k~~~~~~s~d~~L~E 635 (698)
T KOG0978|consen 564 AKQSLEDLQIELEKSEAKLEQIQEQYAELEL--------ELEIEKFKRKRLEEELERLKRKLERLKKEESGASADEVLAE 635 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccHHHHH
Confidence 2223455555555555555555544433211 11111111122233344555566666666663333444555
Q ss_pred HHHHHHH
Q 002678 208 LLEDYVE 214 (893)
Q Consensus 208 dieyYve 214 (893)
.|..|-+
T Consensus 636 Elk~yK~ 642 (698)
T KOG0978|consen 636 ELKEYKE 642 (698)
T ss_pred HHHHHHh
Confidence 5555543
No 245
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=48.20 E-value=67 Score=32.09 Aligned_cols=54 Identities=19% Similarity=0.321 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhCC
Q 002678 131 TRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDND 195 (893)
Q Consensus 131 ~~~wL~~~IdeL~~QiE~~EaEiE~Ls~KK~K~~~~r~~~le~~ierhk~Hi~kLE~lLRlLdN~ 195 (893)
++.=|.+.+..+.+|+|.+-..+..- +.||...|++.-.+++....|.+.++++
T Consensus 37 Trr~m~~A~~~v~kql~~vs~~l~~t-----------KkhLsqRId~vd~klDe~~ei~~~i~~e 90 (126)
T PF07889_consen 37 TRRSMSDAVASVSKQLEQVSESLSST-----------KKHLSQRIDRVDDKLDEQKEISKQIKDE 90 (126)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 45567888889999998887776543 2356666667667777777777666543
No 246
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=47.94 E-value=69 Score=35.55 Aligned_cols=63 Identities=19% Similarity=0.236 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhCCC
Q 002678 131 TRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDE 196 (893)
Q Consensus 131 ~~~wL~~~IdeL~~QiE~~EaEiE~Ls~KK~K~~~~r~~~le~~ierhk~Hi~kLE~lLRlLdN~~ 196 (893)
..+-+-..+++++.++|.+|.++..... +..-.++-+|++.+-+-+-++.-+-.+++.|....
T Consensus 148 i~d~~~~~le~i~~~~~~ie~~l~~~~~---~~~l~~l~~l~~~l~~lr~~l~~~~~~l~~l~~~~ 210 (322)
T COG0598 148 IVDNYFPVLEQIEDELEAIEDQLLASTT---NEELERLGELRRSLVYLRRALAPLRDVLLRLARRP 210 (322)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHhcCcc---HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcC
Confidence 3344455666666666666666543211 12346888999998888888887665555555554
No 247
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=47.84 E-value=3.6e+02 Score=34.29 Aligned_cols=88 Identities=17% Similarity=0.283 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHhhhhcccCCCCchhHHHHHHHHHHHHHHHH-HHHHHHHhhhCCC-------C-------C---hhhhh
Q 002678 142 LESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIM-KLELILRLLDNDE-------L-------S---PEQVN 203 (893)
Q Consensus 142 L~~QiE~~EaEiE~Ls~KK~K~~~~r~~~le~~ierhk~Hi~-kLE~lLRlLdN~~-------l-------~---pe~V~ 203 (893)
++..+|.+.+|+.+. ++.+.. .=-++|+..|++.+--|. +||.+++.++=.. + + -+.|+
T Consensus 576 ~kek~ea~~aev~~~--g~s~~~-~~~~~lkeki~~~~~Ei~~eie~v~~S~gL~~~~~~k~e~a~~~~~p~~~~k~KIe 652 (762)
T PLN03229 576 IKEKMEALKAEVASS--GASSGD-ELDDDLKEKVEKMKKEIELELAGVLKSMGLEVIGVTKKNKDTAEQTPPPNLQEKIE 652 (762)
T ss_pred HHHHHHHHHHHHHhc--CccccC-CCCHHHHHHHHHHHHHHHHHHHHHHhccCchhhhhhhhhhcccccCCChhhHHHHH
Confidence 788888888888773 222111 223456666666666555 6666666433111 1 1 34677
Q ss_pred hhhhHHHHHHHhCCCCccccCCCcccccCCCCC
Q 002678 204 DVKDLLEDYVERNQDDFEEFSDVDELYHLLPLD 236 (893)
Q Consensus 204 ~IKddieyYve~nqddf~ef~dde~iYd~L~Ld 236 (893)
.|.+.|..=|++--+ ..+--+.|+.|.++
T Consensus 653 ~L~~eIkkkIe~av~----ss~LK~k~E~Lk~E 681 (762)
T PLN03229 653 SLNEEINKKIERVIR----SSDLKSKIELLKLE 681 (762)
T ss_pred HHHHHHHHHHHHHhc----chhHHHHHHHHHHH
Confidence 766666666654322 12235567777664
No 248
>PF04286 DUF445: Protein of unknown function (DUF445); InterPro: IPR007383 This entry contains proteins of unknown function. They are predicted to be transmembrane proteins with 2 or 3 TM domains.
Probab=47.65 E-value=4.1e+02 Score=28.99 Aligned_cols=16 Identities=19% Similarity=0.522 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 002678 41 KEKFEADLKKEIKKLQ 56 (893)
Q Consensus 41 KEKlE~DLKKEIKKLQ 56 (893)
|..+..-|++.|.+|+
T Consensus 208 r~~~~~~l~~~i~~L~ 223 (367)
T PF04286_consen 208 RQEIDQKLRELIERLL 223 (367)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3444444444444444
No 249
>PRK10865 protein disaggregation chaperone; Provisional
Probab=47.56 E-value=4.1e+02 Score=33.96 Aligned_cols=51 Identities=20% Similarity=0.208 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHhHHHHHHhhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 002678 46 ADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETK 106 (893)
Q Consensus 46 ~DLKKEIKKLQR~RDQIKtW~~s~eIKDK~~~~~~~~~L~e~RKlIE~~MErFK~vEKesK 106 (893)
..|++.|..|++-.+.++. ..++..+. .|.+.++.|+...++|..++...|
T Consensus 413 ~rLer~l~~L~~E~e~l~~---e~~~~~~~-------~~~~l~~~l~~lq~e~~~L~eq~k 463 (857)
T PRK10865 413 DRLDRRIIQLKLEQQALMK---ESDEASKK-------RLDMLNEELSDKERQYSELEEEWK 463 (857)
T ss_pred HHHHHHHHHHHHHHHHHHh---hhhhHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777777766665532 11232222 566667777777777766666555
No 250
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=47.53 E-value=5.1e+02 Score=32.31 Aligned_cols=26 Identities=15% Similarity=0.304 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccc
Q 002678 83 ALVDARKLIEREMERFKICEKETKTK 108 (893)
Q Consensus 83 ~L~e~RKlIE~~MErFK~vEKesKtK 108 (893)
.|.|+.+.|....+++.+++|..|..
T Consensus 146 ~l~e~~~rl~~~~~~~q~~~R~a~~~ 171 (632)
T PF14817_consen 146 ILREYTKRLQGQVEQLQDIQRKAKVE 171 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCc
Confidence 68899999999999999999987765
No 251
>KOG0247 consensus Kinesin-like protein [Cytoskeleton]
Probab=47.37 E-value=3.5e+02 Score=34.34 Aligned_cols=35 Identities=29% Similarity=0.296 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccccccccCC
Q 002678 83 ALVDARKLIEREMERFKICEKETKTKAFSKEGLGQ 117 (893)
Q Consensus 83 ~L~e~RKlIE~~MErFK~vEKesKtKafSkEGL~~ 117 (893)
.|.+....||..-|.--.++|+..+--|+-+++..
T Consensus 542 ~l~~kke~i~q~re~~~~~~k~~l~~e~~~~i~E~ 576 (809)
T KOG0247|consen 542 QLNDKKEQIEQLRDEIERLKKENLTTEYSIEILES 576 (809)
T ss_pred HHhHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhc
Confidence 45555566666666644456666555555555544
No 252
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=47.36 E-value=6.5e+02 Score=33.00 Aligned_cols=25 Identities=32% Similarity=0.480 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q 002678 132 RDWLNNLVSELESQIDSFEAELEGL 156 (893)
Q Consensus 132 ~~wL~~~IdeL~~QiE~~EaEiE~L 156 (893)
.+-|+.=++.|...+|.+|-|+|-|
T Consensus 327 aesLQ~eve~lkEr~deletdlEIL 351 (1243)
T KOG0971|consen 327 AESLQQEVEALKERVDELETDLEIL 351 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777777777777776
No 253
>smart00126 IL6 Interleukin-6 homologues. Family includes granulocyte colony-stimulating factor (G-CSF) and myelomonocytic growth factor (MGF). IL-6 is also known as B-cell stimulatory factor 2.
Probab=47.32 E-value=87 Score=32.33 Aligned_cols=53 Identities=19% Similarity=0.255 Sum_probs=36.3
Q ss_pred HHHhhhHHHhHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHH-HHhHHHHHHhh
Q 002678 12 DRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKL-QRYRDQIKTWI 66 (893)
Q Consensus 12 Dr~lKKV~EGve~Fd~i~eK~~~a~n~nQKEKlE~DLKKEIKKL-QR~RDQIKtW~ 66 (893)
+.||.||..|+-+|..+++-+++.-. +-++..+. |-.-+|-| |.+|+++|.|-
T Consensus 53 e~CL~ri~~GL~~yq~~L~~l~~~f~-~~~~~v~~-l~~~~~~L~~~l~~k~k~~~ 106 (154)
T smart00126 53 EICLVKITAGLLEYQVYLEYLQNEFP-ENKENVDT-LQLDTKTLIQIIQQEMKDLG 106 (154)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCc-cccccHHH-HHHHHHHHHHHHHHHhhCcC
Confidence 68999999999999999987764433 22444333 33334443 66778888885
No 254
>PRK09793 methyl-accepting protein IV; Provisional
Probab=47.21 E-value=1.5e+02 Score=34.97 Aligned_cols=65 Identities=9% Similarity=0.326 Sum_probs=52.2
Q ss_pred hhHHHHhhhHHHhHHHHHHHHHHhhcCC-CchhHHHHHHHHHHHHHHHHHhHHHHHHhhccccccc
Q 002678 9 GEIDRVLKKVQEGVDVFDSIWNKVYDTD-NANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKD 73 (893)
Q Consensus 9 ~EIDr~lKKV~EGve~Fd~i~eK~~~a~-n~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~eIKD 73 (893)
.++++.+.++.+.++.++..|+++.... .......+-.+|++..+.+.+..+++..|+..+++.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~~l~~~~~~~~~~~~~~~~l~~~~~~~~ 146 (533)
T PRK09793 81 DDIKTLMTTARASLTQSTTLFKSFMAMTAGNEHVRALQKETEKSFARWHNDLEHQATWLESNQLSD 146 (533)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
Confidence 4577889999999999999999998653 3344456677888889999999999999998877653
No 255
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=47.20 E-value=2.6e+02 Score=32.57 Aligned_cols=126 Identities=13% Similarity=0.318 Sum_probs=71.8
Q ss_pred hhHHHHhhhHHHhHHHHHHHHHH----hhcCCCchhHHHHHHHHHHHHHHHHHhHHHHHHhhccccccccccchhhHHHH
Q 002678 9 GEIDRVLKKVQEGVDVFDSIWNK----VYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQAL 84 (893)
Q Consensus 9 ~EIDr~lKKV~EGve~Fd~i~eK----~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~eIKDK~~~~~~~~~L 84 (893)
.|++-+++.++|.++.-+..+++ +.+ .......+-..+++.+..|..+-..+..-+..- ..++..+
T Consensus 251 ~El~~V~~el~~~~~~~~~~~~~~~k~l~~--~~~~~~~~~~~~~~~~~~l~~~~~~l~~yl~~~--------~~~~~~~ 320 (412)
T PF04108_consen 251 QELPDVVKELQERLDEMENNEERTKKLLQS--QRDHIRELYNALSEALEELRKFGERLPSYLAAF--------HDFEERW 320 (412)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
Confidence 58888999999999888888887 542 122334444555555555555444333333211 1122344
Q ss_pred HHHHHHHHHHHHHHHHHHhh-hc-cccccccccCCCCCCCchHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002678 85 VDARKLIEREMERFKICEKE-TK-TKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDSFEAE 152 (893)
Q Consensus 85 ~e~RKlIE~~MErFK~vEKe-sK-tKafSkEGL~~~~k~DP~ekek~E~~~wL~~~IdeL~~QiE~~EaE 152 (893)
.+.+-.|+..|+.++.+-.- .. -.+|.+ |.. +-.-|..+++.+...+..++.+++.+..|
T Consensus 321 ~~~~~~i~~~~~~l~~L~~~Y~~F~~aY~~--LL~------Ev~RRr~~~~k~~~i~~~~~eeL~~l~ee 382 (412)
T PF04108_consen 321 EEEKESIQAYIDELEQLCEFYEGFLSAYDS--LLL------EVERRRAVRDKMKKIIREANEELDKLREE 382 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555566666555554211 10 125544 443 12334557888999999998888877654
No 256
>PF01540 Lipoprotein_7: Adhesin lipoprotein; InterPro: IPR002520 This family consists of the p50 and variable adherence-associated antigen (Vaa) adhesins from Mycoplasma hominis. M. hominis is a mycoplasma associated with human urogenital diseases, pneumonia, and septic arthritis []. An adhesin is a cell surface molecule that mediates adhesion to other cells or to the surrounding surface or substrate. The Vaa antigen is a 50kDa surface lipoprotein that has four tandem repetitive DNA sequences encoding a periodic peptide structure, and is highly immunogenic in the human host []. p50 is also a 50kDa lipoprotein, having three repeats A,B and C, that may be a tetramer of 191kDa in its native environment [].
Probab=47.12 E-value=4.1e+02 Score=30.17 Aligned_cols=107 Identities=22% Similarity=0.370 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhc-ccCCCC-chhHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhhhhhhhHH
Q 002678 132 RDWLNNLVSELESQIDSFEAELEGLTV-KKGKTR-PPRLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLL 209 (893)
Q Consensus 132 ~~wL~~~IdeL~~QiE~~EaEiE~Ls~-KK~K~~-~~r~~~le~~ierhk~Hi~kLE~lLRlLdN~~l~pe~V~~IKddi 209 (893)
-.|++.|..|-.+-.+.+-.||..+.. .+|=.. ..--.++..+....+--|..||......+. -.-+++...|+.+
T Consensus 209 TtwfNgmksEWA~V~~AwkneLsEINSI~~gvEeLkKLAqEIss~Sn~lk~TIseLEKkFkIdd~--tn~~e~k~fK~ql 286 (353)
T PF01540_consen 209 TTWFNGMKSEWARVQEAWKNELSEINSIIKGVEELKKLAQEISSHSNKLKATISELEKKFKIDDS--TNKEEMKKFKNQL 286 (353)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc--cchhHHHHHHHHH
Confidence 345555555555555555555554421 221100 000122333334445667778866654432 2345777788888
Q ss_pred HHHHHhCCC---CccccCCCcccccCCCCCCccc
Q 002678 210 EDYVERNQD---DFEEFSDVDELYHLLPLDKVES 240 (893)
Q Consensus 210 eyYve~nqd---df~ef~dde~iYd~L~Lde~~~ 240 (893)
|.+++.--+ ..++|.-....-.+|+|-+.+.
T Consensus 287 E~ladqLl~ks~~id~f~tvt~~~~df~l~eles 320 (353)
T PF01540_consen 287 ENLADQLLEKSRQIDEFVTVTSAQEDFSLSELES 320 (353)
T ss_pred HHHHHHHHHhhcccchheeeecccccccHHHHHH
Confidence 887764211 2235655677778888876653
No 257
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=46.90 E-value=4.8e+02 Score=29.62 Aligned_cols=31 Identities=13% Similarity=0.200 Sum_probs=19.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002678 127 AKSETRDWLNNLVSELESQIDSFEAELEGLT 157 (893)
Q Consensus 127 ek~E~~~wL~~~IdeL~~QiE~~EaEiE~Ls 157 (893)
+..+-..++...|++++.++..++.+|..+.
T Consensus 229 e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae 259 (312)
T smart00787 229 ELEEELQELESKIEDLTNKKSELNTEIAEAE 259 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555666666666666666666665553
No 258
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=46.86 E-value=1.6e+02 Score=28.97 Aligned_cols=93 Identities=26% Similarity=0.341 Sum_probs=0.0
Q ss_pred HHHHhhhHHHhHHHHHHHHHHhh---------cCCCchhHHHHHHHHHHHHHHHHHhHHHHHHhhccccccccccchhhH
Q 002678 11 IDRVLKKVQEGVDVFDSIWNKVY---------DTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYE 81 (893)
Q Consensus 11 IDr~lKKV~EGve~Fd~i~eK~~---------~a~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~eIKDK~~~~~~~ 81 (893)
.+-+-|-..+|+-..-.+++|++ .--|+.+=-+|-.||.++||+-|
T Consensus 5 ~~~l~k~~~~gaG~~a~~~ek~~klvDelVkkGeln~eEak~~vddl~~q~k~~~------------------------- 59 (108)
T COG3937 5 GEGLRKLALIGAGLAAETAEKVQKLVDELVKKGELNAEEAKRFVDDLLRQAKEAQ------------------------- 59 (108)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHh-------------------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCCCchHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002678 82 QALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDSFEAEL 153 (893)
Q Consensus 82 ~~L~e~RKlIE~~MErFK~vEKesKtKafSkEGL~~~~k~DP~ekek~E~~~wL~~~IdeL~~QiE~~EaEi 153 (893)
...|.. |.++|+. .-++.++..+..++. |+.=|+.|++|+-.+|.++
T Consensus 60 -~e~e~K--~~r~i~~-----------ml~~~~~~r~~~~~~-----------l~~rvd~Lerqv~~Lenk~ 106 (108)
T COG3937 60 -GELEEK--IPRKIEE-----------MLSDLEVARQSEMDE-----------LTERVDALERQVADLENKL 106 (108)
T ss_pred -hhHHHh--hhHHHHH-----------HHhhccccccchHHH-----------HHHHHHHHHHHHHHHHHHh
No 259
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=46.69 E-value=58 Score=29.65 Aligned_cols=86 Identities=22% Similarity=0.280 Sum_probs=41.2
Q ss_pred HHHHHHHhHHHHHHhhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCCCchHHhHHH
Q 002678 51 EIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSE 130 (893)
Q Consensus 51 EIKKLQR~RDQIKtW~~s~eIKDK~~~~~~~~~L~e~RKlIE~~MErFK~vEKesKtKafSkEGL~~~~k~DP~ekek~E 130 (893)
.|.|+++++.++..-.+.- ..|....+.++..++.-..++-+ ++.|=.-|=+- -...+.+
T Consensus 3 ~~~~~~~l~~~l~~~~~q~------------~~l~~~~~~~~~~~~eL~~l~~~--~~~y~~vG~~f------v~~~~~~ 62 (106)
T PF01920_consen 3 LQNKFQELNQQLQQLEQQI------------QQLERQLRELELTLEELEKLDDD--RKVYKSVGKMF------VKQDKEE 62 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHTSSTT---EEEEEETTEE------EEEEHHH
T ss_pred HHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHhCCCc--chhHHHHhHHH------HHhhHHH
Confidence 3566677776665322210 13444444444444444444444 45665555432 1234455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002678 131 TRDWLNNLVSELESQIDSFEAELEGL 156 (893)
Q Consensus 131 ~~~wL~~~IdeL~~QiE~~EaEiE~L 156 (893)
+..-|..-++.|+..|+.++.+++.+
T Consensus 63 ~~~~L~~~~~~~~~~i~~l~~~~~~l 88 (106)
T PF01920_consen 63 AIEELEERIEKLEKEIKKLEKQLKYL 88 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555554443
No 260
>KOG0260 consensus RNA polymerase II, large subunit [Transcription]
Probab=46.66 E-value=3.1e+02 Score=36.62 Aligned_cols=21 Identities=38% Similarity=0.355 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHhHHHHH
Q 002678 43 KFEADLKKEIKKLQRYRDQIK 63 (893)
Q Consensus 43 KlE~DLKKEIKKLQR~RDQIK 63 (893)
++...|+.|-|||+|=|..+-
T Consensus 920 ~l~~lle~e~~~l~~dr~~l~ 940 (1605)
T KOG0260|consen 920 KLQNLLECEYKKLVRDRRVLL 940 (1605)
T ss_pred HHHHHHHHHHHhhhhhhhhhh
Confidence 556666677777777776666
No 261
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=46.23 E-value=4.1e+02 Score=32.06 Aligned_cols=36 Identities=28% Similarity=0.391 Sum_probs=27.4
Q ss_pred hhHHHHhhhHHHhHHHH---HHHHHHhhcCCCch--hHHHH
Q 002678 9 GEIDRVLKKVQEGVDVF---DSIWNKVYDTDNAN--QKEKF 44 (893)
Q Consensus 9 ~EIDr~lKKV~EGve~F---d~i~eK~~~a~n~n--QKEKl 44 (893)
+|.+++||+=-|.++.| .+.-+|++-+...- ++|++
T Consensus 189 qe~~~ll~~Rve~le~~Sal~~lq~~L~la~~~~~~~~e~~ 229 (554)
T KOG4677|consen 189 QEVRRLLKGRVESLERFSALRSLQDKLQLAEEAVSMHDENV 229 (554)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Confidence 68999999999999999 77777777665433 34444
No 262
>cd07600 BAR_Gvp36 The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Golgi vesicle protein of 36 kDa and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Proteomic analysis shows that Golgi vesicle protein of 36 kDa (Gvp36) may be involved in vesicular trafficking and nutritional adaptation. A Saccharomyces cerevisiae strain deficient in Gvp36 shows defects in growth, in actin cytoskeleton polarization, in endocytosis, in vacuolar biogenesis, and in the cell cycle. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=45.69 E-value=1.3e+02 Score=32.93 Aligned_cols=89 Identities=11% Similarity=0.191 Sum_probs=61.0
Q ss_pred hhHHHHhhhHHHhHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhHHHHHHhhccccccccccchhhHHHHHHHH
Q 002678 9 GEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDAR 88 (893)
Q Consensus 9 ~EIDr~lKKV~EGve~Fd~i~eK~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~eIKDK~~~~~~~~~L~e~R 88 (893)
+||-+.-|||..-.-.||..-.|+..+.++..++.+..+++.-=.|+--.++--+.-+.+ |.+.. ..+...+
T Consensus 147 k~i~k~RKkle~~RLd~D~~K~~~~ka~~~~k~~~~~~e~E~aEdef~~a~E~a~~~M~~--il~~~------e~i~~L~ 218 (242)
T cd07600 147 QKAHKARKKVEDKRLQLDTARAELKSAEPAEKQEAARVEVETAEDEFVSATEEAVELMKE--VLDNP------EPLQLLK 218 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhHHHHHHHHHH--HHhhh------HHHHHHH
Confidence 478899999999999999999999888776555555555554334443344433333322 22211 3788899
Q ss_pred HHHHHHHHHHHHHHhhh
Q 002678 89 KLIEREMERFKICEKET 105 (893)
Q Consensus 89 KlIE~~MErFK~vEKes 105 (893)
.+|+.+|+-||.|=+.+
T Consensus 219 ~fv~AQl~Yh~~~~e~L 235 (242)
T cd07600 219 ELVKAQLAYHKTAAELL 235 (242)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999986554
No 263
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=45.50 E-value=3.7e+02 Score=27.84 Aligned_cols=23 Identities=22% Similarity=0.416 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Q 002678 135 LNNLVSELESQIDSFEAELEGLT 157 (893)
Q Consensus 135 L~~~IdeL~~QiE~~EaEiE~Ls 157 (893)
+..-|.++++.++.++.++|.++
T Consensus 168 ~~~ei~~~~~~~~~~~~~~~~is 190 (236)
T PF09325_consen 168 AENEIEEAERRVEQAKDEFEEIS 190 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677777777777777664
No 264
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=45.47 E-value=7 Score=47.76 Aligned_cols=21 Identities=24% Similarity=0.351 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 002678 136 NNLVSELESQIDSFEAELEGL 156 (893)
Q Consensus 136 ~~~IdeL~~QiE~~EaEiE~L 156 (893)
..-|+++++||..++.++...
T Consensus 362 ~~qle~~k~qi~eLe~~l~~~ 382 (713)
T PF05622_consen 362 KSQLEEYKKQIQELEQKLSEE 382 (713)
T ss_dssp ---------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 355556666666665555443
No 265
>cd07594 BAR_Endophilin_B The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle.
Probab=45.43 E-value=1.6e+02 Score=32.04 Aligned_cols=90 Identities=19% Similarity=0.244 Sum_probs=71.3
Q ss_pred hhHHHHhhhHHHhHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhHHHHHHhhccccccccccchhhHHHHHHHH
Q 002678 9 GEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDAR 88 (893)
Q Consensus 9 ~EIDr~lKKV~EGve~Fd~i~eK~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~eIKDK~~~~~~~~~L~e~R 88 (893)
.+|-+..|||.-=.-.||..-.|+..+.+.....++|.||+.---|+.+..+--+.-+.+ |++.. ...|.+.+
T Consensus 133 k~i~k~RKkLe~rRLd~D~~k~r~~kAk~~~~~~~~e~elr~Ae~kF~~~~E~a~~~M~~--i~~~~-----~~~~~~L~ 205 (229)
T cd07594 133 KTISKERKLLENKRLDLDACKTRVKKAKSAEAIEQAEQDLRVAQSEFDRQAEITKLLLEG--ISSTH-----ANHLRCLR 205 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHH--HHhcC-----chHHHHHH
Confidence 378888999999999999999999888777667788999988888888888776666553 44432 13889999
Q ss_pred HHHHHHHHHHHHHHhhh
Q 002678 89 KLIEREMERFKICEKET 105 (893)
Q Consensus 89 KlIE~~MErFK~vEKes 105 (893)
.+|+.+++=|+.|=..+
T Consensus 206 ~lv~AQl~Yh~q~~e~L 222 (229)
T cd07594 206 DFVEAQMTYYAQCYQYM 222 (229)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999885443
No 266
>PF07072 DUF1342: Protein of unknown function (DUF1342); InterPro: IPR009777 This family consists of several hypothetical bacterial proteins of around 250 residues in length. Members of this family are often known as YacF after the Escherichia coli protein P36680 from SWISSPROT. The function of this family is unknown.; PDB: 2OEZ_A.
Probab=45.10 E-value=30 Score=36.99 Aligned_cols=47 Identities=26% Similarity=0.529 Sum_probs=33.9
Q ss_pred HHHHHH-HHHHHHhHHHHHHhhccccccccccchhhHHHHHHHHHHHHHHHHHHHH
Q 002678 46 ADLKKE-IKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKI 100 (893)
Q Consensus 46 ~DLKKE-IKKLQR~RDQIKtW~~s~eIKDK~~~~~~~~~L~e~RKlIE~~MErFK~ 100 (893)
+|||-| ||.|.|++-.++.|....+|-.. +|.+....|+.....-..
T Consensus 39 ~DlK~eLlKELeRq~~~L~~~~~~p~vd~~--------~l~~~l~~l~~~~~~L~~ 86 (211)
T PF07072_consen 39 ADLKSELLKELERQRQKLNQWRDNPGVDQE--------ALDALLQELDQALQALQQ 86 (211)
T ss_dssp S-HHHHHHHHHHHHHHHHHCTTT-TTS-HH--------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCHH--------HHHHHHHHHHHHHHHHHh
Confidence 477876 58899999999999999999754 577777777776665433
No 267
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=45.10 E-value=2.7e+02 Score=26.22 Aligned_cols=87 Identities=26% Similarity=0.327 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHhhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCC
Q 002678 42 EKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKT 121 (893)
Q Consensus 42 EKlE~DLKKEIKKLQR~RDQIKtW~~s~eIKDK~~~~~~~~~L~e~RKlIE~~MErFK~vEKesKtKafSkEGL~~~~k~ 121 (893)
+.|+.-.++|+..+-+=|+- . .+|.+.=++|+.+.+|-..-+.+ .-.....+
T Consensus 13 ~~l~~~~~~Ef~~I~~Er~v----------~---------~kLneLd~Li~eA~~r~~~~~~~---------~~~~~~~l 64 (109)
T PF03980_consen 13 EFLEENCKKEFEEILEERDV----------V---------EKLNELDKLIEEAKERKNSGERE---------KPVWRHSL 64 (109)
T ss_pred HHHHHHHHHHHHHHHHHhhH----------H---------HHHHHHHHHHHHHHHhHhccccC---------CCCCCCCC
Confidence 45666667777666655542 2 27888889999998884322222 11223457
Q ss_pred CchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002678 122 DPKEKAKSETRDWLNNLVSELESQIDSFEAELEGL 156 (893)
Q Consensus 122 DP~ekek~E~~~wL~~~IdeL~~QiE~~EaEiE~L 156 (893)
+|.+--+......+...++.|+..++.++.+-+.|
T Consensus 65 ~P~~~i~a~l~~~~~~~~~~L~~~l~~l~~eN~~L 99 (109)
T PF03980_consen 65 TPEEDIRAHLAPYKKKEREQLNARLQELEEENEAL 99 (109)
T ss_pred ChHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88887777777777777777777777777666555
No 268
>PF04740 LXG: LXG domain of WXG superfamily; InterPro: IPR006829 This group of putative transposases is found in Gram-positive bacteria, mostly Bacillus members and is thought to be a Cytosolic protein. However, we have also found a Bacillus subtilis bacteriophage SPbetac2 homologue (O64023 from SWISSPROT), possibly arising as a result of horizontal transfer. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=45.01 E-value=1.4e+02 Score=30.47 Aligned_cols=64 Identities=27% Similarity=0.525 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHH----HhHHHHHHhhcc-ccccc--cccchhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002678 42 EKFEADLKKEIKKLQ----RYRDQIKTWIQS-SEIKD--KKVSASYEQALVDARKLIEREMERFKICEKET 105 (893)
Q Consensus 42 EKlE~DLKKEIKKLQ----R~RDQIKtW~~s-~eIKD--K~~~~~~~~~L~e~RKlIE~~MErFK~vEKes 105 (893)
+.||.+||+.|+++. .+.+.|+..+.. +||=. +-....+...+.+.|+.+++..|+..+.+...
T Consensus 98 ~~L~~el~~~l~~~~~~~~~~~~~~~~~~~~vsdiv~~~~~~~~~~~~~~~~~~~~l~~~lekL~~fd~~~ 168 (204)
T PF04740_consen 98 DFLESELKKKLNQLKEQIEDLQDEINSILSSVSDIVSLPKPSSSSFIDSLEKAKKKLQETLEKLRAFDQQS 168 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 556667766666554 466666666665 45511 01112345577788888888888777666443
No 269
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=44.82 E-value=61 Score=31.87 Aligned_cols=29 Identities=28% Similarity=0.313 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 002678 80 YEQALVDARKLIEREMERFKICEKETKTK 108 (893)
Q Consensus 80 ~~~~L~e~RKlIE~~MErFK~vEKesKtK 108 (893)
++..|.+.|..|...++.++.++.+-..|
T Consensus 53 ~~~~l~~~r~~l~~~~~~~~~L~~~~~~k 81 (150)
T PF07200_consen 53 LEPELEELRSQLQELYEELKELESEYQEK 81 (150)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34588899999999999999888876554
No 270
>PF13654 AAA_32: AAA domain; PDB: 3K1J_B.
Probab=44.46 E-value=7.4 Score=46.19 Aligned_cols=65 Identities=22% Similarity=0.445 Sum_probs=0.0
Q ss_pred HHHHHHHH-HHHhHHHHHHhhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhcccccc----ccccCCCC
Q 002678 47 DLKKEIKK-LQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFS----KEGLGQQP 119 (893)
Q Consensus 47 DLKKEIKK-LQR~RDQIKtW~~s~eIKDK~~~~~~~~~L~e~RKlIE~~MErFK~vEKesKtKafS----kEGL~~~~ 119 (893)
.||++|++ +..+++.|-.+..+.+...++. ...+.+.+.|. +-|+.++++.+-+.|. ..|+.-.+
T Consensus 88 ~f~~~m~~lie~l~~~ip~~Fese~y~~~~~--~i~~~~~~~~~------~~~~~l~~~A~~~gf~l~~t~~G~~~~P 157 (509)
T PF13654_consen 88 KFKKDMEELIEELKEEIPAAFESEEYQERKE--EIEEEFQEKRE------KLLEELEEEAEEKGFALKRTPSGFVFIP 157 (509)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccc--ccccccccccc------cccccccccccccccccccccccccccc
Confidence 47777777 4677899999999999887771 11112222222 2466678888888774 56665443
No 271
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=44.38 E-value=28 Score=39.63 Aligned_cols=72 Identities=14% Similarity=0.198 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHhhhhc--ccCCCCch----hHHHHHHHHHHHHHHHHHHHHHHHhhhCCC--CChhhhhhhhhHHHHHH
Q 002678 142 LESQIDSFEAELEGLTV--KKGKTRPP----RLTHLETSITRHKAHIMKLELILRLLDNDE--LSPEQVNDVKDLLEDYV 213 (893)
Q Consensus 142 L~~QiE~~EaEiE~Ls~--KK~K~~~~----r~~~le~~ierhk~Hi~kLE~lLRlLdN~~--l~pe~V~~IKddieyYv 213 (893)
+.++.+.++.|.+.|.. +.=|.+-+ ..+.....|.+++.++..|..-|+.++.+. .+.+.|++++++|...-
T Consensus 2 ~~eEW~eL~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~sLk~~~~~~~~e~~~~i~~L~~~Ik~r~ 81 (330)
T PF07851_consen 2 CEEEWEELQKEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELKKSLKRCKKSLSAEERELIEKLEEDIKERR 81 (330)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHH
Confidence 34555666666666632 22222222 334455577889999998888888886642 45778888888887654
No 272
>PF06013 WXG100: Proteins of 100 residues with WXG; InterPro: IPR010310 ESAT-6 is a small protein appears to be of fundamental importance in virulence and protective immunity in Mycobacterium tuberculosis. Homologues have been detected in other Gram-positive bacterial species. It may represent a novel secretion system potentially driven by the PF01580 from PFAM domains in the YukA-like proteins []. Members of this protein family include secretion targets for type main variants of type VII secretion systems (T7SS), one found in the Actinobacteria, one found in the Firmicutes. This model was derived through iteration from PF06013 from PFAM. The best characterised member of this family is ESAT-6 from Mycobacterium tuberculosis. Members of this family usually are ~100 amino acids in length but occasionally have long C-terminal extension. ; PDB: 3FAV_A 1WA8_A 3Q4H_B 2KG7_A 2VRZ_B 2VS0_B 3OGI_A 3H6P_B 3GVM_B 3GWK_C ....
Probab=44.24 E-value=1.9e+02 Score=24.41 Aligned_cols=64 Identities=19% Similarity=0.218 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-ccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002678 129 SETRDWLNNLVSELESQIDSFEAELEGLTV-KKGKTRPPRLTHLETSITRHKAHIMKLELILRLL 192 (893)
Q Consensus 129 ~E~~~wL~~~IdeL~~QiE~~EaEiE~Ls~-KK~K~~~~r~~~le~~ierhk~Hi~kLE~lLRlL 192 (893)
..+..-|....++|+.+++.++..++.|.. =+|.....=.+..+.+....+-.+..|+.+...|
T Consensus 10 ~~~a~~~~~~~~~l~~~~~~l~~~~~~l~~~W~G~a~~af~~~~~~~~~~~~~~~~~L~~~~~~l 74 (86)
T PF06013_consen 10 RAAAQQLQAQADELQSQLQQLESSIDSLQASWQGEAADAFQDKFEEWNQAFRQLNEALEELSQAL 74 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGBTSSTSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778889999999999999999999943 2465543323333444444444555555444433
No 273
>PF09597 IGR: IGR protein motif; InterPro: IPR019083 This entry is found in fungal and plant proteins and contains a conserved IGR motif. Its function is unknown.
Probab=44.00 E-value=38 Score=29.65 Aligned_cols=26 Identities=27% Similarity=0.397 Sum_probs=19.9
Q ss_pred ccccccccccchhhHHHHHHHHHHHHHHHHHHH
Q 002678 67 QSSEIKDKKVSASYEQALVDARKLIEREMERFK 99 (893)
Q Consensus 67 ~s~eIKDK~~~~~~~~~L~e~RKlIE~~MErFK 99 (893)
.+.+.|++. .=...||.|=..||+|+
T Consensus 30 ~s~~LK~~G-------Ip~r~RryiL~~~ek~r 55 (57)
T PF09597_consen 30 SSKQLKELG-------IPVRQRRYILRWREKYR 55 (57)
T ss_pred CHHHHHHCC-------CCHHHHHHHHHHHHHHh
Confidence 344667776 45678999999999996
No 274
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=43.93 E-value=3.3e+02 Score=34.98 Aligned_cols=38 Identities=29% Similarity=0.246 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHh---hhc-----cccccccccCCCCCCCch
Q 002678 87 ARKLIEREMERFKICEK---ETK-----TKAFSKEGLGQQPKTDPK 124 (893)
Q Consensus 87 ~RKlIE~~MErFK~vEK---esK-----tKafSkEGL~~~~k~DP~ 124 (893)
.|+++|.+-=+||+++. .+| .|.+.+-+|....++|+.
T Consensus 620 ~R~l~E~e~i~~k~~ke~~~~~~~te~~aK~~k~~d~ed~e~lD~d 665 (988)
T KOG2072|consen 620 KRILREKEAIRKKELKERLEQLKQTEVGAKGGKEKDLEDLEKLDAD 665 (988)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCChHHhhhcCHH
Confidence 46666666556665532 334 677777777777778873
No 275
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=43.92 E-value=5.3e+02 Score=32.68 Aligned_cols=18 Identities=22% Similarity=0.420 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 002678 136 NNLVSELESQIDSFEAEL 153 (893)
Q Consensus 136 ~~~IdeL~~QiE~~EaEi 153 (893)
++.|.+++++++.+..++
T Consensus 571 ~~~~~~a~~~~~~~i~~l 588 (771)
T TIGR01069 571 QEALKALKKEVESIIREL 588 (771)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344555555555555554
No 276
>cd07655 F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce
Probab=43.90 E-value=1.2e+02 Score=32.84 Aligned_cols=55 Identities=18% Similarity=0.310 Sum_probs=30.0
Q ss_pred chhhhHHHHhhhHHHhHHHHHHHHHHhhcCCCc------------hhHHHHHHHHHHHHHHHHHhHH
Q 002678 6 KLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNA------------NQKEKFEADLKKEIKKLQRYRD 60 (893)
Q Consensus 6 KLQ~EIDr~lKKV~EGve~Fd~i~eK~~~a~n~------------nQKEKlE~DLKKEIKKLQR~RD 60 (893)
|+|+.+...+|+|..--..|+....++..+... .+-||++.-|.|-...+.+.++
T Consensus 123 kaqk~~~~~~~~l~kaKk~Y~~~cke~e~a~~~~~~~~~d~~~~~~eleK~~~k~~k~~~~~~~~~~ 189 (258)
T cd07655 123 KAQKPWAKLLKKVEKAKKAYHAACKAEKSAQKQENNAKSDTSLSPDQVKKLQDKVEKCKQEVSKTKD 189 (258)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666677777777777666665433222 2345555555555544444443
No 277
>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.90 E-value=1.2e+02 Score=32.63 Aligned_cols=35 Identities=11% Similarity=0.362 Sum_probs=25.7
Q ss_pred HHHHHHHhhh--CCCCChhhhhhhhhHHHHHHHhCCC
Q 002678 184 KLELILRLLD--NDELSPEQVNDVKDLLEDYVERNQD 218 (893)
Q Consensus 184 kLE~lLRlLd--N~~l~pe~V~~IKddieyYve~nqd 218 (893)
.|-.-.+-|. ...|.-++|++|+|+++.|+|.+.+
T Consensus 108 AmK~~~k~mK~~ykkvnId~IedlQDem~Dlmd~a~E 144 (218)
T KOG1655|consen 108 AMKDTNKEMKKQYKKVNIDKIEDLQDEMEDLMDQADE 144 (218)
T ss_pred HHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHH
Confidence 3333444443 3578999999999999999997755
No 278
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=43.86 E-value=2.6e+02 Score=33.23 Aligned_cols=86 Identities=26% Similarity=0.302 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCC-----------chhHHHHHHHHHHHHHHHHH-HHHHHHhhhCCC
Q 002678 129 SETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTR-----------PPRLTHLETSITRHKAHIMK-LELILRLLDNDE 196 (893)
Q Consensus 129 ~E~~~wL~~~IdeL~~QiE~~EaEiE~Ls~KK~K~~-----------~~r~~~le~~ierhk~Hi~k-LE~lLRlLdN~~ 196 (893)
.+-.+=|-.-||.|+.-||.+..++-.-.++=+++. ...+.+++.+|.+-|=|-.| +|.=|..+=.++
T Consensus 216 ~~~Sd~lltkVDDLQD~vE~LRkDV~~RgVRp~~~qLe~v~kdi~~a~keL~~m~~~i~~eKP~WkKiWE~EL~~VcEEq 295 (426)
T smart00806 216 SEDSDSLLTKVDDLQDIIEALRKDVAQRGVRPSKKQLETVQKELETARKELKKMEEYIDIEKPIWKKIWEAELDKVCEEQ 295 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHH
Confidence 345566667778888888887777644322211111 12455555555444433332 222222222111
Q ss_pred ----CChhhhhhhhhHHHHHHH
Q 002678 197 ----LSPEQVNDVKDLLEDYVE 214 (893)
Q Consensus 197 ----l~pe~V~~IKddieyYve 214 (893)
+..|.+.|++|||+.-.+
T Consensus 296 qfL~lQedL~~DL~dDL~ka~e 317 (426)
T smart00806 296 QFLTLQEDLIADLKEDLEKAEE 317 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 235666777777776554
No 279
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=43.73 E-value=4.5e+02 Score=28.38 Aligned_cols=42 Identities=21% Similarity=0.306 Sum_probs=25.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhhhhhhhHH
Q 002678 165 PPRLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLL 209 (893)
Q Consensus 165 ~~r~~~le~~ierhk~Hi~kLE~lLRlLdN~~l~pe~V~~IKddi 209 (893)
...+..|+..+.+..-++.-||.-|+--.. +-+++-.|=|||
T Consensus 160 ~~e~~aLqa~lkk~e~~~~SLe~~LeQK~k---En~ELtkICDeL 201 (207)
T PF05010_consen 160 QAELLALQASLKKEEMKVQSLEESLEQKTK---ENEELTKICDEL 201 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 345667777888888888777766654322 234444455554
No 280
>PF02185 HR1: Hr1 repeat; InterPro: IPR000861 The HR1 repeat was first described as a three times repeated homology region of the N-terminal non-catalytic part of protein kinase PRK1(PKN) []. The first two of these repeats were later shown to bind the small G protein rho [, ] known to activate PKN in its GTP-bound form. Similar rho-binding domains also occur in a number of other protein kinases and in the rho-binding proteins rhophilin and rhotekin. Recently, the structure of the N-terminal HR1 repeat complexed with RhoA has been determined by X-ray crystallography []. It forms an antiparallel coiled-coil fold termed an ACC finger. This entry includes domains found within rho-associated protein kinases.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1CXZ_B 3O0Z_C 2RMK_B 1URF_A.
Probab=43.57 E-value=86 Score=27.48 Aligned_cols=59 Identities=29% Similarity=0.452 Sum_probs=42.2
Q ss_pred chhhhHHHHhhhHHHhHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhHHHHHHhhccc
Q 002678 6 KLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSS 69 (893)
Q Consensus 6 KLQ~EIDr~lKKV~EGve~Fd~i~eK~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~ 69 (893)
.|+.+||+=. ||.+|.+-.=.+| ++++...+...+..|..--+||.-||++|..+....
T Consensus 5 ~L~~~i~~E~-ki~~Gae~m~~~~----~t~~~~~~~~~~~~l~~s~~kI~~L~~~L~~l~~~~ 63 (70)
T PF02185_consen 5 ELQKKIDKEL-KIKEGAENMLQAY----STDKKKVLSEAESQLRESNQKIELLREQLEKLQQRS 63 (70)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHH----CCHHCH-HHHHHHHHHHHHHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHH----ccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3566666553 5788888877777 333333588888889999999999999988876543
No 281
>cd07649 F-BAR_GAS7 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Growth Arrest Specific protein 7. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Growth Arrest Specific protein 7 (GAS7) is mainly expressed in the brain and is required for neurite outgrowth. It may also play a role in the protection and migration of embryonic stem cells. Treatment-related acute myeloid leukemia (AML) has been reported resulting from mixed-lineage leukemia (MLL)-GAS7 translocations as a complication of primary cancer treatment. GAS7 contains an N-terminal SH3 domain, followed by a WW domain, and a central F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=43.40 E-value=2.4e+02 Score=30.58 Aligned_cols=24 Identities=8% Similarity=0.066 Sum_probs=11.9
Q ss_pred chhhhHHHHhhhHHHhHHHHHHHH
Q 002678 6 KLQGEIDRVLKKVQEGVDVFDSIW 29 (893)
Q Consensus 6 KLQ~EIDr~lKKV~EGve~Fd~i~ 29 (893)
|+|+.+-..+++|..+-+.|..-.
T Consensus 111 k~~K~~~~~~~~~~kaKk~y~~~c 134 (233)
T cd07649 111 DLRKQLASRYAAVEKARKALLERQ 134 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444445555555555554433
No 282
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=43.13 E-value=5.6e+02 Score=32.14 Aligned_cols=26 Identities=23% Similarity=0.377 Sum_probs=16.5
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHh
Q 002678 40 QKEKFEADLKKEIKKLQRYRDQIKTW 65 (893)
Q Consensus 40 QKEKlE~DLKKEIKKLQR~RDQIKtW 65 (893)
+.+++++|+..-..+|+.-++.|..-
T Consensus 176 ~~~~~~~~~~~~~~~l~~v~~~~~~~ 201 (670)
T KOG0239|consen 176 ESLKLESDLGDLVTELEHVTNSISEL 201 (670)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666666666553
No 283
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=42.91 E-value=2.1e+02 Score=33.18 Aligned_cols=99 Identities=23% Similarity=0.450 Sum_probs=62.2
Q ss_pred HhhhHHHhHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhHHHHHHhhccccccccccchhhHHHHHHHHHHHHH
Q 002678 14 VLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIER 93 (893)
Q Consensus 14 ~lKKV~EGve~Fd~i~eK~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~eIKDK~~~~~~~~~L~e~RKlIE~ 93 (893)
.+.|+.+-++-|+++-..|.+.+--+--++| ..|-||.++|+..-+.++.|..-.+ .|.+++.++.
T Consensus 5 ~~~kl~~~~~r~~el~~~L~~p~v~~d~~~~-~~lske~a~l~~iv~~~~~~~~~~~------------~l~~a~~~l~- 70 (363)
T COG0216 5 LLEKLESLLERYEELEALLSDPEVISDPDEY-RKLSKEYAELEPIVEKYREYKKAQE------------DLEDAKEMLA- 70 (363)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcccccCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHh-
Confidence 5677888888888888888776533323333 3567788888866666665543211 2222222221
Q ss_pred HHHHHHHHHhhhccccccccccCCCCCCCchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002678 94 EMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLT 157 (893)
Q Consensus 94 ~MErFK~vEKesKtKafSkEGL~~~~k~DP~ekek~E~~~wL~~~IdeL~~QiE~~EaEiE~Ls 157 (893)
.+.|| |.++.++.=|.+|+.+++.+|.++.-|-
T Consensus 71 -------------------------~~~D~------em~ema~~Ei~~~~~~~~~le~~L~~lL 103 (363)
T COG0216 71 -------------------------EEKDP------EMREMAEEEIKELEAKIEELEEELKILL 103 (363)
T ss_pred -------------------------ccCCH------HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 11354 4555666778999999999999998874
No 284
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=42.77 E-value=6.1e+02 Score=29.60 Aligned_cols=16 Identities=19% Similarity=0.241 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHhh
Q 002678 140 SELESQIDSFEAELEG 155 (893)
Q Consensus 140 deL~~QiE~~EaEiE~ 155 (893)
-.|++|++.++..+..
T Consensus 278 ~~l~~qi~~l~~~l~~ 293 (498)
T TIGR03007 278 IATKREIAQLEEQKEE 293 (498)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3444555555554433
No 285
>cd07675 F-BAR_FNBP1L The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 1-Like. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FormiN Binding Protein 1-Like (FNBP1L), also known as Toca-1 (Transducer of Cdc42-dependent actin assembly), forms a complex with neural Wiskott-Aldrich syndrome protein (N-WASP). The FNBP1L/N-WASP complex induces the formation of filopodia and endocytic vesicles. FNBP1L is required for Cdc42-induced actin assembly and is essential for autophagy of intracellular pathogens. It contains an N-terminal F-BAR domain, a central Cdc42-binding HR1 domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=42.70 E-value=1.4e+02 Score=33.03 Aligned_cols=34 Identities=18% Similarity=0.232 Sum_probs=29.4
Q ss_pred cccchhhhHHHHhhhHHHhHHHHHHHHHHhhcCC
Q 002678 3 ASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTD 36 (893)
Q Consensus 3 a~RKLQ~EIDr~lKKV~EGve~Fd~i~eK~~~a~ 36 (893)
..||||++++.+++.|.-.--.|+..+...+.+.
T Consensus 114 ~~~klqk~l~~~~~~leksKk~Y~~acke~E~A~ 147 (252)
T cd07675 114 EGRKAQQYLDMCWKQMDNSKKKFERECREAEKAQ 147 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3589999999999999999999998888777653
No 286
>COG4911 Uncharacterized conserved protein [Function unknown]
Probab=42.65 E-value=41 Score=33.13 Aligned_cols=67 Identities=22% Similarity=0.355 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCC-hhhh
Q 002678 129 SETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELS-PEQV 202 (893)
Q Consensus 129 ~E~~~wL~~~IdeL~~QiE~~EaEiE~Ls~KK~K~~~~r~~~le~~ierhk~Hi~kLE~lLRlLdN~~l~-pe~V 202 (893)
.|..-||.+.+ .|.+.+..++|.|...-- .-|+++++..+++|-..|..+=.|+|-++++-|| |..+
T Consensus 14 ~el~P~l~d~~----~~~r~~~n~~e~L~~qed---k~~l~e~e~q~k~~l~~i~e~G~iird~d~glVDFpa~~ 81 (123)
T COG4911 14 RELLPWLRDRL----IQLRKIKNEIELLLVQED---KYALQEYESQTKKILDEIIEKGIIIRDIDIGLVDFPAII 81 (123)
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHhccccc---HHHHHHHHHHHHHHHHHHHHcCceeeccccccccchhhh
Confidence 34455665554 455677888888854322 2478888988888888888888899999999998 4433
No 287
>PF07083 DUF1351: Protein of unknown function (DUF1351); InterPro: IPR009785 This entry is represented by Lactobacillus prophage Lj928, Orf309. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several bacterial and phage proteins of around 230 residues in length. The function of this family is unknown.
Probab=42.48 E-value=2.2e+02 Score=30.34 Aligned_cols=22 Identities=36% Similarity=0.389 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHH
Q 002678 43 KFEADLKKEIKKLQRYRDQIKT 64 (893)
Q Consensus 43 KlE~DLKKEIKKLQR~RDQIKt 64 (893)
|.-++|.|-.|.|-.-|-.||.
T Consensus 46 k~rA~LNKl~k~id~~RK~ikk 67 (215)
T PF07083_consen 46 KDRAELNKLKKAIDDKRKEIKK 67 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555544444444444443
No 288
>PF11500 Cut12: Spindle pole body formation-associated protein; InterPro: IPR021589 This is the central coiled-coil region of cut12 also found in other fungi, barring S. cerevisiae. The full protein has two predicted coiled-coil regions, and one consensus phosphorylation site for p34cdc2 and two for MAP kinase. During Schizosaccharomyces japonicus yFS275 mitosis, the duplicated spindle pole bodies (SPBs) nucleate microtubule arrays that interdigitate to form the mitotic spindle. Cut12 is localised to the SPB throughout the cell cycle, predominantly around the inner face of the interphase SPB, adjacent to the nucleus []. Cut12 associates with Fin1 and is important in this context for the activity of Plo1 [].
Probab=42.36 E-value=72 Score=32.90 Aligned_cols=27 Identities=26% Similarity=0.578 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHhhcc
Q 002678 42 EKFEADLKKEIKKLQRYRDQIKTWIQS 68 (893)
Q Consensus 42 EKlE~DLKKEIKKLQR~RDQIKtW~~s 68 (893)
|+|..+.++||+||=++|.--|...--
T Consensus 76 e~Y~~~a~~Em~KLi~yk~~aKsyAkk 102 (152)
T PF11500_consen 76 ESYHEKAEKEMEKLIKYKQLAKSYAKK 102 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667789999999999999988887644
No 289
>PF15294 Leu_zip: Leucine zipper
Probab=42.27 E-value=3.2e+02 Score=30.86 Aligned_cols=98 Identities=21% Similarity=0.283 Sum_probs=56.8
Q ss_pred HHHHHHHHHHhHHHHHHhhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCCCchHHh
Q 002678 48 LKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKA 127 (893)
Q Consensus 48 LKKEIKKLQR~RDQIKtW~~s~eIKDK~~~~~~~~~L~e~RKlIE~~MErFK~vEKesKtKafSkEGL~~~~k~DP~eke 127 (893)
|.|||.+||-=-+..|.=+.+-+.. ....++-|+.|+.+...-..+--..|.| +.++.....+...|..
T Consensus 130 l~kEi~rLq~EN~kLk~rl~~le~~--------at~~l~Ek~kl~~~L~~lq~~~~~~~~k---~~~~~~~q~l~dLE~k 198 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLKERLKSLEKQ--------ATSALDEKSKLEAQLKELQDEQGDQKGK---KDLSFKAQDLSDLENK 198 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHhhhcc---ccccccccchhhHHHH
Confidence 9999999985444444433333322 1156677788888777666644444444 3344443444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002678 128 KSETRDWLNNLVSELESQIDSFEAELEGL 156 (893)
Q Consensus 128 k~E~~~wL~~~IdeL~~QiE~~EaEiE~L 156 (893)
=..+..=|...+..+..+.+.++.++...
T Consensus 199 ~a~lK~e~ek~~~d~~~~~k~L~e~L~~~ 227 (278)
T PF15294_consen 199 MAALKSELEKALQDKESQQKALEETLQSC 227 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455556666777777777777766553
No 290
>KOG2273 consensus Membrane coat complex Retromer, subunit VPS5/SNX1, Sorting nexins, and related PX domain-containing proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.21 E-value=1.5e+02 Score=34.89 Aligned_cols=38 Identities=26% Similarity=0.451 Sum_probs=24.1
Q ss_pred HHHHHHHHhhhCCCCChhhhh-hhhhHHHHHHHhCCCCc
Q 002678 183 MKLELILRLLDNDELSPEQVN-DVKDLLEDYVERNQDDF 220 (893)
Q Consensus 183 ~kLE~lLRlLdN~~l~pe~V~-~IKddieyYve~nqddf 220 (893)
.+++.+-++|..-.++.+.|. .|+++++.|-++-..||
T Consensus 431 ~~~~~~~~~~~~~~~~~~~i~~~~~~e~~~f~~~~~~d~ 469 (503)
T KOG2273|consen 431 EKVNELEELLALKELELDEISERIRAELERFEESRRQDF 469 (503)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555556666655665 48888888887554454
No 291
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=41.88 E-value=3.5e+02 Score=30.14 Aligned_cols=25 Identities=12% Similarity=0.276 Sum_probs=11.0
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHHH
Q 002678 40 QKEKFEADLKKEIKKLQRYRDQIKT 64 (893)
Q Consensus 40 QKEKlE~DLKKEIKKLQR~RDQIKt 64 (893)
+..-++..+.+--..+++++..++.
T Consensus 82 ~l~~l~~~~~~l~a~~~~l~~~~~~ 106 (423)
T TIGR01843 82 DAAELESQVLRLEAEVARLRAEADS 106 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3444444444444444444444443
No 292
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=41.84 E-value=62 Score=33.72 Aligned_cols=49 Identities=20% Similarity=0.304 Sum_probs=31.5
Q ss_pred HHhHHHHHHhhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 002678 56 QRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKT 107 (893)
Q Consensus 56 QR~RDQIKtW~~s~eIKDK~~~~~~~~~L~e~RKlIE~~MErFK~vEKesKt 107 (893)
+++.++|+.+...-+.|+-+ .++| .|+-+|+-||+-|.+-..+|--.+-
T Consensus 95 ~~l~~ri~eLe~~l~~kad~-vvsY--qll~hr~e~ee~~~~l~~le~~~~~ 143 (175)
T PRK13182 95 NTITRRLDELERQLQQKADD-VVSY--QLLQHRREMEEMLERLQKLEARLKK 143 (175)
T ss_pred HHHHHHHHHHHHHHHHHHhh-hhhH--HHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444322 1344 7999999999999999888866553
No 293
>PF15005 IZUMO: Izumo sperm-egg fusion
Probab=41.62 E-value=60 Score=33.61 Aligned_cols=89 Identities=18% Similarity=0.253 Sum_probs=57.1
Q ss_pred HHHHhhhHHHhHHHH---HHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhHHHHHHhhccccccccccchhhHHHHHHH
Q 002678 11 IDRVLKKVQEGVDVF---DSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDA 87 (893)
Q Consensus 11 IDr~lKKV~EGve~F---d~i~eK~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~eIKDK~~~~~~~~~L~e~ 87 (893)
+-..++++..|++-| ++.-+++..--.-.|=+|.-..||+++|+|. .+++||-- -|.|.
T Consensus 34 ~~~~~~rl~~~m~~~~~~~~~~~a~~g~vd~~~L~~va~~~~~~lkrl~-----------~s~~kg~~-------ll~EL 95 (160)
T PF15005_consen 34 LQARAQRLLLEMEDFFFLPYAEDAFMGVVDEDTLDKVAWSFKNQLKRLT-----------DSDLKGEP-------LLKEL 95 (160)
T ss_pred HHHHHHHHHHHhhCccccccchhhhhhhccHHHHHHHHHHHHHHHHHHh-----------cCCcccch-------HHHHH
Confidence 334455555555543 2223355555556778888899999999876 78899865 55566
Q ss_pred HHHHHHHHHHHHHHHhhhcccccccc-------ccCCCCCCC
Q 002678 88 RKLIEREMERFKICEKETKTKAFSKE-------GLGQQPKTD 122 (893)
Q Consensus 88 RKlIE~~MErFK~vEKesKtKafSkE-------GL~~~~k~D 122 (893)
+-+-+.+++.||.+ .|.|+++ |++.++-+|
T Consensus 96 ~~~r~~~~~~lk~~-----lk~fq~~a~cp~~Cg~~~~~vi~ 132 (160)
T PF15005_consen 96 VWMRQNQKKELKKA-----LKQFQKKACCPNKCGLMLQTVID 132 (160)
T ss_pred HHHHHHHHHHHHHH-----HHHHHHHhcCchhccccccceee
Confidence 66666677777776 5566666 776654333
No 294
>PLN03223 Polycystin cation channel protein; Provisional
Probab=41.59 E-value=3.4e+02 Score=36.78 Aligned_cols=54 Identities=20% Similarity=0.360 Sum_probs=33.0
Q ss_pred HHHHHHHHHH------------HhHHHHHHhhccccccccccchhhHHHHHHHHHHH-----HHHHH----HHHHHHhhh
Q 002678 47 DLKKEIKKLQ------------RYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLI-----EREME----RFKICEKET 105 (893)
Q Consensus 47 DLKKEIKKLQ------------R~RDQIKtW~~s~eIKDK~~~~~~~~~L~e~RKlI-----E~~ME----rFK~vEKes 105 (893)
=+++..|++- |+|||++.|-.-++=++.. +.-+.|-||+. |-.|| -||.|=+|+
T Consensus 1442 fm~~rfrslL~g~~~~~~i~~~~~~~~lr~w~ge~~~~~~~-----~~~~~~~~~~~~~~~~~~d~~~l~~v~~~c~~~~ 1516 (1634)
T PLN03223 1442 MLRDKWRSMFKGWFYKNHIPEARVRRQLRIWKGENPDEEEE-----EAFREEKEKVFTYLNKELDEAGLKRVLRRCVIET 1516 (1634)
T ss_pred HHHHHHHHHHhhhcccccCCcHHHHHHHHHhcCCCCCcccc-----hhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHhh
Confidence 3566666665 8999999999887655322 33556666654 33444 455565554
No 295
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=41.49 E-value=5.7e+02 Score=28.91 Aligned_cols=27 Identities=33% Similarity=0.473 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhCC
Q 002678 169 THLETSITRHKAHIMKLELILRLLDND 195 (893)
Q Consensus 169 ~~le~~ierhk~Hi~kLE~lLRlLdN~ 195 (893)
..+...+++.+--+.+||.|.|.|...
T Consensus 282 ~~~~~~~~~~~~k~~kLe~LcRaLQ~e 308 (309)
T PF09728_consen 282 QKLEKELEKLKKKIEKLEKLCRALQAE 308 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 335556777888899999999998754
No 296
>TIGR01541 tape_meas_lam_C phage tail tape measure protein, lambda family. This model represents a relatively well-conserved region near the C-terminus of the tape measure protein of a lambda and related phage. This protein, which controls phage tail length, is typically about 1000 residues in length. Both low-complexity sequence and insertion/deletion events appear common in this family. Mutational studies suggest a ruler or template role in the determination of phage tail length. Similar behavior is attributed to proteins from distantly related or unrelated families in other phage.
Probab=41.25 E-value=6e+02 Score=29.12 Aligned_cols=24 Identities=4% Similarity=0.291 Sum_probs=15.5
Q ss_pred hhhhhhhhHHHHHHHhCCCCcccc
Q 002678 200 EQVNDVKDLLEDYVERNQDDFEEF 223 (893)
Q Consensus 200 e~V~~IKddieyYve~nqddf~ef 223 (893)
.-...+.|.|-.+|..+..+|-||
T Consensus 177 ~af~gm~dal~~fvttGk~~f~d~ 200 (332)
T TIGR01541 177 NAFGGMASNIAQMLTTGKANWKSF 200 (332)
T ss_pred HHHHHHHHHHHHHHHHhHhhHHHH
Confidence 444557777777777666666554
No 297
>PF10368 YkyA: Putative cell-wall binding lipoprotein; InterPro: IPR019454 The YkyA family of proteins contain a lipoprotein signal and a hydrolase domain. They are similar to cell wall binding proteins and might also be recognisable by a host immune defence system. It is thus likely that they function in pathways important for pathogenicity []. ; PDB: 2AP3_A.
Probab=41.17 E-value=24 Score=37.29 Aligned_cols=60 Identities=28% Similarity=0.349 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHhHHHHHHhhccc-cccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccC
Q 002678 47 DLKKEIKKLQRYRDQIKTWIQSS-EIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLG 116 (893)
Q Consensus 47 DLKKEIKKLQR~RDQIKtW~~s~-eIKDK~~~~~~~~~L~e~RKlIE~~MErFK~vEKesKtKafSkEGL~ 116 (893)
-|++|=+-|++.++.++.--..- .|+|+. ...+.-++++.=.+||+....-.+ +.+.+|.
T Consensus 83 ~l~~Ek~ai~~a~~e~~~~~~~i~ki~d~~-------~k~qa~~l~~~~~~ry~~~~~l~~---~Y~~~l~ 143 (204)
T PF10368_consen 83 ELKKEKEAIEKAKEEFKKAKKYIDKIEDEK-------LKKQAKELNEAMKKRYKSYDKLYK---AYKKALE 143 (204)
T ss_dssp HHHHHHHHHHHHHHHHTT----------HH-------HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcchh-------HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Confidence 46666666777777776544433 577877 556666677666677777665432 3444553
No 298
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=41.01 E-value=4.7e+02 Score=28.52 Aligned_cols=16 Identities=31% Similarity=0.517 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 002678 83 ALVDARKLIEREMERF 98 (893)
Q Consensus 83 ~L~e~RKlIE~~MErF 98 (893)
...+--+.|-.+|+||
T Consensus 181 ~fe~Is~~~k~El~rF 196 (234)
T cd07664 181 DFEQISKTIRKEVGRF 196 (234)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4555556677777777
No 299
>PF04943 Pox_F11: Poxvirus F11 protein; InterPro: IPR007027 These proteins belong to the poxvirus F11 family. They are early virus proteins.
Probab=40.96 E-value=1e+02 Score=35.71 Aligned_cols=93 Identities=15% Similarity=0.269 Sum_probs=56.3
Q ss_pred chhhhHHHHhhhHHHhHHHHHHHHHHhh-cCCCch----hHHHHHHHHHHHHHHHHHhHHHHHHhhccccccccccchhh
Q 002678 6 KLQGEIDRVLKKVQEGVDVFDSIWNKVY-DTDNAN----QKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASY 80 (893)
Q Consensus 6 KLQ~EIDr~lKKV~EGve~Fd~i~eK~~-~a~n~n----QKEKlE~DLKKEIKKLQR~RDQIKtW~~s~eIKDK~~~~~~ 80 (893)
|+..++|+|.-+.- =+.+|..+|+.++ +..+.. -....+.=+.+-|+-|+..|+|+- .+.+.+++-..-|-+
T Consensus 219 k~r~~lEk~y~~~~-~~~El~~~Yd~~~a~~~~~~~is~~~~rs~~i~~~~~~~le~m~k~~~--~~~~~~~~~~l~~~m 295 (366)
T PF04943_consen 219 KLRILLEKCYSRIC-MINELNHIYDSIYANHNNSRPISDIIKRSHDILTHGINNLEAMNKEAS--KAKNTIRPNSLKARM 295 (366)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhcCCccHHHHHhcchHHHHhhhhhccchhhhhh--hccCCCChhHHHHHH
Confidence 44556666655544 4566777777776 333222 255667778999999999997765 455566643322333
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 002678 81 EQALVDARKLIEREMERFKIC 101 (893)
Q Consensus 81 ~~~L~e~RKlIE~~MErFK~v 101 (893)
++-+.+.++.|.+.-|.+|.+
T Consensus 296 ~~Dv~el~~~i~elwde~~~l 316 (366)
T PF04943_consen 296 EKDVNELLKSIPELWDEIKNL 316 (366)
T ss_pred HHHHHHHHhhHHHHHHHHHHH
Confidence 445556666666655555544
No 300
>cd00238 ERp29c ERp29 and ERp38, C-terminal domain; composed of the protein disulfide isomerase (PDI)-like proteins ERp29 and ERp38. ERp29 (also called ERp28) is a ubiquitous endoplasmic reticulum (ER)-resident protein expressed in high levels in secretory cells. It contains a redox inactive TRX-like domain at the N-terminus. The expression profile of ERp29 suggests a role in secretory protein production, distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex and is essential in regulating the secretion of thyroglobulin. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase. ERp38 is a P5-like protein, first isolated from alfalfa (the cDNA clone was named G1), which contains two redox active TRX domains at the N-terminus, like human P5.
Probab=40.94 E-value=1.2e+02 Score=28.56 Aligned_cols=39 Identities=26% Similarity=0.476 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHH-HHHHHHhhhCCCCChhhhhhhhhHH
Q 002678 171 LETSITRHKAHIMK-LELILRLLDNDELSPEQVNDVKDLL 209 (893)
Q Consensus 171 le~~ierhk~Hi~k-LE~lLRlLdN~~l~pe~V~~IKddi 209 (893)
++..+++-.-.+.+ ++.|-|+|+++.|.++.+++++-.+
T Consensus 48 m~Ki~~kg~~yv~~E~~RL~~iL~~~~ls~~K~del~~R~ 87 (93)
T cd00238 48 MEKILEKGEDYVEKELARLERLLEKKGLAPEKADELTRRL 87 (93)
T ss_pred HHHHHHcchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 34444444444544 8889999999999999999976543
No 301
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=40.82 E-value=9e+02 Score=31.02 Aligned_cols=67 Identities=24% Similarity=0.370 Sum_probs=40.3
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-----c----c----CCCCchhHHHHHHHHHHHHHHHHHHHHHHHh
Q 002678 125 EKAKSETRDWLNNLVSELESQIDSFEAELEGLTV-----K----K----GKTRPPRLTHLETSITRHKAHIMKLELILRL 191 (893)
Q Consensus 125 ekek~E~~~wL~~~IdeL~~QiE~~EaEiE~Ls~-----K----K----~K~~~~r~~~le~~ierhk~Hi~kLE~lLRl 191 (893)
++++.|-.+=+.+.+..|+..++.++.++..... | | .=++..+|..|+-.++..+.-+.+|+.=|..
T Consensus 460 e~e~~Eele~~~~e~~~lk~~~~~LQ~eLsEk~~~l~~~kee~s~l~s~~~K~~s~i~~l~I~lEk~rek~~kl~~ql~k 539 (775)
T PF10174_consen 460 EKERQEELETYQKELKELKAKLESLQKELSEKELQLEDAKEEASKLASSQEKKDSEIERLEIELEKKREKHEKLEKQLEK 539 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHhhccchhhhHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 5666666667777777777777777777654321 0 1 0012345666666666666666666655443
No 302
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=40.78 E-value=3.7e+02 Score=33.07 Aligned_cols=64 Identities=14% Similarity=0.199 Sum_probs=31.8
Q ss_pred cchhhhHHHHhhhHHHhHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhHHHHHHhhcc
Q 002678 5 RKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQS 68 (893)
Q Consensus 5 RKLQ~EIDr~lKKV~EGve~Fd~i~eK~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s 68 (893)
|++.+|+.+..++..|-.+.-|.+-=.++..+..+=++==+..|.-|+|+|+..-.-...|...
T Consensus 167 ~~~~~~l~~~~~~~~e~~~~~d~L~fq~~Ele~~~l~~gE~e~L~~e~~rLsn~ekl~~~~~~a 230 (557)
T COG0497 167 KQARRELEDLQEKERERAQRADLLQFQLEELEELNLQPGEDEELEEERKRLSNSEKLAEAIQNA 230 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4455555555555555444444333333333333333333456677777777665555555443
No 303
>cd01111 HTH_MerD Helix-Turn-Helix DNA binding domain of the MerD transcription regulator. Helix-turn-helix (HTH) transcription regulator MerD. The putative secondary regulator of mercury resistance (mer) operons, MerD, has been shown to down-regulate the expression of this operon in gram-negative bacteria. It binds to the same operator DNA as MerR that activates transcription of the operon in the presence of mercury ions. The MerD protein shares the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily, which promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are conserved and contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules such as metal ions, drugs,
Probab=40.59 E-value=65 Score=30.64 Aligned_cols=29 Identities=7% Similarity=0.071 Sum_probs=26.0
Q ss_pred chhHHHHHHHHHHHHHHHHHhHHHHHHhh
Q 002678 38 ANQKEKFEADLKKEIKKLQRYRDQIKTWI 66 (893)
Q Consensus 38 ~nQKEKlE~DLKKEIKKLQR~RDQIKtW~ 66 (893)
..+.+.++.+|...++.|.+++.+++.|.
T Consensus 79 ~~~~~~~~~~l~~~~~~L~~l~~~L~~~~ 107 (107)
T cd01111 79 EACLAQLRQKIEVRRAALNALTTQLAEMA 107 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 35788999999999999999999999984
No 304
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=40.41 E-value=4.2e+02 Score=28.23 Aligned_cols=106 Identities=22% Similarity=0.337 Sum_probs=0.0
Q ss_pred CccccchhhhHHHHhhhHHHhHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhHHHHHHhhccccccccccchhh
Q 002678 1 MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASY 80 (893)
Q Consensus 1 Maa~RKLQ~EIDr~lKKV~EGve~Fd~i~eK~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~eIKDK~~~~~~ 80 (893)
|++.|-+-.+=-+++-..+......+..-+++....-.+.-+|++ +|++||+.+++--++++.
T Consensus 108 i~svk~~f~~R~~a~~~~q~a~~~l~kkr~~~~Kl~~~~~~~K~~-~~~~ev~~~e~~~~~a~~---------------- 170 (224)
T cd07623 108 IGAIKDVFHERVKVWQNWQNAQQTLTKKREAKAKLELSGRTDKLD-QAQQEIKEWEAKVDRGQK---------------- 170 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHH-HHHHHHHHHHHHHHHHHH----------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCCCchHHhHHH-----HHHHHHHHHHHHHHHHHHHHH
Q 002678 81 EQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSE-----TRDWLNNLVSELESQIDSFEA 151 (893)
Q Consensus 81 ~~~L~e~RKlIE~~MErFK~vEKesKtKafSkEGL~~~~k~DP~ekek~E-----~~~wL~~~IdeL~~QiE~~Ea 151 (893)
...+-.+.|-.+|+|| +++|.. ...||...|+.=++.++.+|.
T Consensus 171 --~fe~is~~~k~El~rF--------------------------~~erv~dfk~~l~~~le~~i~~q~~~~~~We~ 218 (224)
T cd07623 171 --EFEEISKTIKKEIERF--------------------------EKNRVKDFKDIIIKYLESLLNTQQQLIKYWEA 218 (224)
T ss_pred --HHHHHHHHHHHHHHHH--------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 305
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=40.30 E-value=3.2e+02 Score=32.46 Aligned_cols=24 Identities=21% Similarity=0.176 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhC
Q 002678 171 LETSITRHKAHIMKLELILRLLDN 194 (893)
Q Consensus 171 le~~ierhk~Hi~kLE~lLRlLdN 194 (893)
++..++.++..+.+|+.-|+.|..
T Consensus 150 ~~~~~~~~~~~l~~l~~~l~~l~~ 173 (525)
T TIGR02231 150 AERRIRELEKQLSELQNELNALLT 173 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcc
Confidence 344444444555555555554443
No 306
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=40.25 E-value=5e+02 Score=32.43 Aligned_cols=22 Identities=23% Similarity=0.315 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 002678 133 DWLNNLVSELESQIDSFEAELE 154 (893)
Q Consensus 133 ~wL~~~IdeL~~QiE~~EaEiE 154 (893)
.|+..-|..+.+.|+.|+.+++
T Consensus 470 ~~~~rei~~~~~~I~~L~~~L~ 491 (652)
T COG2433 470 VRKDREIRARDRRIERLEKELE 491 (652)
T ss_pred HhhhHHHHHHHHHHHHHHHHHH
Confidence 3555555666666666665553
No 307
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=40.08 E-value=2.1e+02 Score=31.27 Aligned_cols=71 Identities=27% Similarity=0.448 Sum_probs=38.2
Q ss_pred HHHHhHHHHHHhhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCCCchHHhHHHHHH
Q 002678 54 KLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRD 133 (893)
Q Consensus 54 KLQR~RDQIKtW~~s~eIKDK~~~~~~~~~L~e~RKlIE~~MErFK~vEKesKtKafSkEGL~~~~k~DP~ekek~E~~~ 133 (893)
|++.....|..|-.--+ .+...-.+..+.|..+|+||.. || -+.=|.-...
T Consensus 160 K~~~a~~Ev~e~e~k~~--------~a~~~fe~is~~ik~El~rFe~-er--------------------~~Dfk~~v~~ 210 (234)
T cd07665 160 KLQQAKDEIAEWESRVT--------QYERDFERISATVRKEVIRFEK-EK--------------------SKDFKNHIIK 210 (234)
T ss_pred HHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHH-HH--------------------HHHHHHHHHH
Confidence 55555555555543322 1222455566777777788721 00 0112233667
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 002678 134 WLNNLVSELESQIDSFEAEL 153 (893)
Q Consensus 134 wL~~~IdeL~~QiE~~EaEi 153 (893)
||..+|+.=++-||.+|.=+
T Consensus 211 fles~ie~qke~ie~We~fl 230 (234)
T cd07665 211 YLETLLHSQQQLVKYWEAFL 230 (234)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 88877777777777776543
No 308
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=39.98 E-value=4.8e+02 Score=28.50 Aligned_cols=18 Identities=11% Similarity=0.381 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 002678 137 NLVSELESQIDSFEAELE 154 (893)
Q Consensus 137 ~~IdeL~~QiE~~EaEiE 154 (893)
+.+..++..|..+|+.|.
T Consensus 53 eeLrqI~~DIn~lE~iIk 70 (230)
T PF10146_consen 53 EELRQINQDINTLENIIK 70 (230)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344445555666666553
No 309
>cd07676 F-BAR_FBP17 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 17. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Formin Binding Protein 17 (FBP17), also called FormiN Binding Protein 1 (FNBP1), is involved in dynamin-mediated endocytosis. It is recruited to clathrin-coated pits late in the endocytosis process and may play a role in the invagination and scission steps. FBP17 binds in vivo to tankyrase, a protein involved in telomere maintenance and mitogen activated protein kinase (MAPK) signaling. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=39.94 E-value=1.9e+02 Score=31.69 Aligned_cols=34 Identities=18% Similarity=0.254 Sum_probs=29.4
Q ss_pred ccchhhhHHHHhhhHHHhHHHHHHHHHHhhcCCC
Q 002678 4 SRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDN 37 (893)
Q Consensus 4 ~RKLQ~EIDr~lKKV~EGve~Fd~i~eK~~~a~n 37 (893)
.+|+|+++++.+++|.-.--.|+..+...+.+..
T Consensus 116 ~~k~qk~~~~~~~~lekaKk~Y~~acke~E~A~~ 149 (253)
T cd07676 116 GRKAQQHIETCWKQLESSKRRFERDCKEADRAQQ 149 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3799999999999999999999998888876644
No 310
>PRK09546 zntB zinc transporter; Reviewed
Probab=39.59 E-value=2.5e+02 Score=31.15 Aligned_cols=58 Identities=14% Similarity=0.178 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhCC
Q 002678 134 WLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDND 195 (893)
Q Consensus 134 wL~~~IdeL~~QiE~~EaEiE~Ls~KK~K~~~~r~~~le~~ierhk~Hi~kLE~lLRlLdN~ 195 (893)
-+...+++|+.++|.+|.++-. .......++-.|++.+-+.+-++.-+..++..|.+.
T Consensus 154 ~~~~~l~~i~~~ld~lE~~l~~----~~~~~~~~l~~lrr~l~~lrr~l~p~~~~l~~L~~~ 211 (324)
T PRK09546 154 HASEFIEELHDKIIDLEDNLLD----QQIPPRGELALLRKQLIVMRRYMAPQRDVFARLASE 211 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc----CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344455555555555554421 111122588999999988888888888888666543
No 311
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=39.54 E-value=3.9e+02 Score=34.28 Aligned_cols=24 Identities=33% Similarity=0.339 Sum_probs=15.0
Q ss_pred CCCCccCc-cccCchhHHHHHHHHH
Q 002678 515 EPGQFRGR-TEIAPDQREKFLQRLQ 538 (893)
Q Consensus 515 e~~~~~~~-~~i~~d~~~~~~q~~q 538 (893)
|+|-.|-| .||.+++=|.-..|+-
T Consensus 1212 eTgL~rKrGAEI~~~eFe~~W~r~G 1236 (1259)
T KOG0163|consen 1212 ETGLTRKRGAEILEHEFEREWERNG 1236 (1259)
T ss_pred hhccccccccccChHHHHHHHHHhC
Confidence 44555554 3788887777776553
No 312
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=39.34 E-value=4.5e+02 Score=27.16 Aligned_cols=53 Identities=25% Similarity=0.436 Sum_probs=33.4
Q ss_pred CchhHHHHHHHHHHHHHHH----HHHHHHHHhhhCCC--CChhhhhhhhhHHHHHHHhC
Q 002678 164 RPPRLTHLETSITRHKAHI----MKLELILRLLDNDE--LSPEQVNDVKDLLEDYVERN 216 (893)
Q Consensus 164 ~~~r~~~le~~ierhk~Hi----~kLE~lLRlLdN~~--l~pe~V~~IKddieyYve~n 216 (893)
+.+|++.++.-|+...-++ .++|.|-..+..+- .+-+.+.++|+-|..|++..
T Consensus 161 ~~~k~~~~~~ei~~~~~~~~~~~~~~~~is~~~k~E~~rf~~~k~~d~k~~l~~~~~~~ 219 (236)
T PF09325_consen 161 RQDKVEQAENEIEEAERRVEQAKDEFEEISENIKKELERFEKEKVKDFKSMLEEYAESQ 219 (236)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467777766665555544 34445555444433 45778888899898888754
No 313
>PF07083 DUF1351: Protein of unknown function (DUF1351); InterPro: IPR009785 This entry is represented by Lactobacillus prophage Lj928, Orf309. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several bacterial and phage proteins of around 230 residues in length. The function of this family is unknown.
Probab=39.30 E-value=5.1e+02 Score=27.70 Aligned_cols=23 Identities=22% Similarity=0.375 Sum_probs=13.9
Q ss_pred HHHhhhCCCCChhhhhhhhhHHH
Q 002678 188 ILRLLDNDELSPEQVNDVKDLLE 210 (893)
Q Consensus 188 lLRlLdN~~l~pe~V~~IKddie 210 (893)
.+|+|++|.==+|-+..|++|.+
T Consensus 188 yi~~l~~g~~l~eil~~i~~d~~ 210 (215)
T PF07083_consen 188 YIRMLDYGKTLAEILKQIKEDRD 210 (215)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHH
Confidence 45677776544555556666654
No 314
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=39.25 E-value=4.1e+02 Score=32.07 Aligned_cols=52 Identities=27% Similarity=0.339 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHhHHHHHHhhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002678 47 DLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKET 105 (893)
Q Consensus 47 DLKKEIKKLQR~RDQIKtW~~s~eIKDK~~~~~~~~~L~e~RKlIE~~MErFK~vEKes 105 (893)
||++.|.+|+|..+.+|.=+.+ .|.++- . ....+-+..+.-++|=+.+.+|.
T Consensus 11 dl~~~I~~L~~~i~~~k~eV~~-~I~~~y-----~-df~~~~~~~~~L~~~~~~l~~eI 62 (593)
T PF06248_consen 11 DLRKSISRLSRRIEELKEEVHS-MINKKY-----S-DFSPSLQSAKDLIERSKSLAREI 62 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHH-----H-HHHHHHHhHHHHHHHHHHHHHHH
Confidence 7888888888888888776543 233322 1 23333333344456667777766
No 315
>PRK11281 hypothetical protein; Provisional
Probab=39.24 E-value=1.1e+03 Score=31.53 Aligned_cols=56 Identities=14% Similarity=0.205 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 002678 44 FEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKT 107 (893)
Q Consensus 44 lE~DLKKEIKKLQR~RDQIKtW~~s~eIKDK~~~~~~~~~L~e~RKlIE~~MErFK~vEKesKt 107 (893)
||..|...-.-||....++-+|-+. .+........++..|.+...|=.++++.-+.
T Consensus 126 LEq~L~q~~~~Lq~~Q~~La~~Nsq--------Li~~qT~PERAQ~~lsea~~RlqeI~~~L~~ 181 (1113)
T PRK11281 126 LESRLAQTLDQLQNAQNDLAEYNSQ--------LVSLQTQPERAQAALYANSQRLQQIRNLLKG 181 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------HHhhhcchHHHHHHHHHHHHHHHHHHHHHhC
Confidence 7777776666666666666555211 1112224555666666667777777776655
No 316
>cd07909 YciF YciF bacterial stress response protein, ferritin-like iron-binding domain. YciF is a bacterial protein of unknown function that is up-regulated when bacteria experience stress conditions, and is highly conserved in a broad range of bacterial species. YciF has a ferritin-like domain. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterio
Probab=39.23 E-value=1.3e+02 Score=30.62 Aligned_cols=48 Identities=15% Similarity=0.275 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhCCC--CChhhhhhhhhHHHHHHHhC
Q 002678 169 THLETSITRHKAHIMKLELILRLLDNDE--LSPEQVNDVKDLLEDYVERN 216 (893)
Q Consensus 169 ~~le~~ierhk~Hi~kLE~lLRlLdN~~--l~pe~V~~IKddieyYve~n 216 (893)
+.|+.+++--+.||.+||.|++.|.-.- +..+-+..|-...+.++...
T Consensus 36 ~~l~~H~~eT~~qi~rLe~if~~lg~~~~~~~c~~m~gli~e~~~~~~~~ 85 (147)
T cd07909 36 EAFESHLEETEGQVERLEQIFESLGEKPEGKKCKAMEGLIKEAEELIEET 85 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCccCcchHHHHHHHHHHHHHhcc
Confidence 4466666666899999999999987653 34566666666666666533
No 317
>KOG3270 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.22 E-value=53 Score=36.16 Aligned_cols=66 Identities=20% Similarity=0.263 Sum_probs=50.9
Q ss_pred hHHHhHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhHHHHHHhhccccccccccchhhHHHHHHHHHHHHHHHH
Q 002678 17 KVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREME 96 (893)
Q Consensus 17 KV~EGve~Fd~i~eK~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~eIKDK~~~~~~~~~L~e~RKlIE~~ME 96 (893)
|..|+-+.|++.++-|..-++-.+.-+...||-++++||+|. |.. .+-.|+|.|...+..-+
T Consensus 89 r~~d~~~Q~i~lldQv~~l~~l~~~~~~~e~L~~~~e~l~r~----------nl~--------~~p~l~el~~~~~~~~t 150 (244)
T KOG3270|consen 89 RDKDAEEQFIELLDQVQKLNGLEVARKIQEKLVKSVEKLARE----------NLE--------KEPALVELRNQASDIFT 150 (244)
T ss_pred hchhhhHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhccc----------chh--------hccchHHHHhhhhhhhh
Confidence 477888899999999988777665448888899999999874 222 33479999999998877
Q ss_pred HHHH
Q 002678 97 RFKI 100 (893)
Q Consensus 97 rFK~ 100 (893)
.|+.
T Consensus 151 ~~~~ 154 (244)
T KOG3270|consen 151 QLEN 154 (244)
T ss_pred hhhc
Confidence 7754
No 318
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=39.10 E-value=4.9e+02 Score=28.72 Aligned_cols=15 Identities=20% Similarity=0.355 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHh
Q 002678 177 RHKAHIMKLELILRL 191 (893)
Q Consensus 177 rhk~Hi~kLE~lLRl 191 (893)
+++..+..|+..|..
T Consensus 258 ~~~~~l~~~~~~L~~ 272 (319)
T PF02601_consen 258 QKRQRLERLEARLEA 272 (319)
T ss_pred HHHHHHHHHHHHHHc
Confidence 344444444444443
No 319
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=39.06 E-value=2.5e+02 Score=30.01 Aligned_cols=14 Identities=43% Similarity=0.313 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHH
Q 002678 84 LVDARKLIEREMER 97 (893)
Q Consensus 84 L~e~RKlIE~~MEr 97 (893)
|...|..-|++|..
T Consensus 183 l~~~~~~~~~~~~~ 196 (239)
T cd07647 183 LEDARVEWESEHAT 196 (239)
T ss_pred HHHHHHHHHHHHHH
Confidence 56666666666654
No 320
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=38.95 E-value=5.8e+02 Score=28.25 Aligned_cols=27 Identities=11% Similarity=0.197 Sum_probs=17.1
Q ss_pred chhhhHHHHhhhHHHhHHHHHHHHHHhh
Q 002678 6 KLQGEIDRVLKKVQEGVDVFDSIWNKVY 33 (893)
Q Consensus 6 KLQ~EIDr~lKKV~EGve~Fd~i~eK~~ 33 (893)
+|| +||.-+-++..=+..|...++|+.
T Consensus 11 ~iq-~lD~e~~rl~~~~~~~~~~l~k~~ 37 (239)
T COG1579 11 AIQ-KLDLEKDRLEPRIKEIRKALKKAK 37 (239)
T ss_pred HHH-HHHHHHHHHHHhhhhhHHHHHHHH
Confidence 444 666666666666667777777763
No 321
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=38.68 E-value=6.8e+02 Score=32.16 Aligned_cols=60 Identities=22% Similarity=0.294 Sum_probs=37.4
Q ss_pred hhHHHHhhhHHHhHHHHHHHHHHhhc---CCCchhHHHH-HHHHHHHHHHH-HHhHHHHHHhhcc
Q 002678 9 GEIDRVLKKVQEGVDVFDSIWNKVYD---TDNANQKEKF-EADLKKEIKKL-QRYRDQIKTWIQS 68 (893)
Q Consensus 9 ~EIDr~lKKV~EGve~Fd~i~eK~~~---a~n~nQKEKl-E~DLKKEIKKL-QR~RDQIKtW~~s 68 (893)
.||.|++..|.+.|...-.+.--..- ..-+=|==+- -+.|+|.++-| |+||+|=|+=-.+
T Consensus 356 sE~qRLitEvE~cislLPav~g~tniq~EIALA~QplrsENaqLrRrLrilnqqlreqe~~~k~~ 420 (861)
T PF15254_consen 356 SEVQRLITEVEACISLLPAVSGSTNIQVEIALAMQPLRSENAQLRRRLRILNQQLREQEKAEKTS 420 (861)
T ss_pred HHHHHHHHHHHHHHHhhhhhhccccchhhhHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhcccC
Confidence 48889999999999888776432110 0001111111 24688888887 8999998876444
No 322
>PF06729 CENP-R: Kinetochore component, CENP-R; InterPro: IPR009601 This family consists of mammalian nuclear receptor co-activator NRIF3 proteins. NRIF3 exhibits a distinct receptor specificity in interacting with and potentiating the activity of only TRs and RXRs but not other examined nuclear receptors. NRIF3 as a coregulator that possesses both transactivation and transrepression domains and/or functions. Collectively, the NRIF3 family of coregulators may play dual roles in mediating both positive and negative regulatory effects on gene expression [].
Probab=38.52 E-value=73 Score=32.38 Aligned_cols=57 Identities=19% Similarity=0.314 Sum_probs=44.7
Q ss_pred hhHHHHhhhHHHhHHHHHHHHHHhhcCCCchhHHHHHH---------HHHHHHHHHHHhHHHHHHh
Q 002678 9 GEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEA---------DLKKEIKKLQRYRDQIKTW 65 (893)
Q Consensus 9 ~EIDr~lKKV~EGve~Fd~i~eK~~~a~n~nQKEKlE~---------DLKKEIKKLQR~RDQIKtW 65 (893)
.|++-++-||.--++.|=+||+.+.+...-.---+||+ +||.|++|-|.|=-++..|
T Consensus 59 D~fm~L~SkvekS~eeime~~qnL~slQALeGsreLEnLiGvs~sSc~Lk~ElqKTkeLmtkv~k~ 124 (139)
T PF06729_consen 59 DEFMVLLSKVEKSLEEIMEIRQNLSSLQALEGSRELENLIGVSCSSCDLKRELQKTKELMTKVEKQ 124 (139)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHhccccchHHHHHHHHHHHHHHHHHHHH
Confidence 57889999999999999999999876654443345665 8999999988776665544
No 323
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=38.44 E-value=1.9e+02 Score=25.52 Aligned_cols=53 Identities=8% Similarity=0.344 Sum_probs=29.4
Q ss_pred HHHHhhhHHHhHHHHHHHHHHhh---cCCCchhHHHHHHHHHHHHHHHHHhHHHHH
Q 002678 11 IDRVLKKVQEGVDVFDSIWNKVY---DTDNANQKEKFEADLKKEIKKLQRYRDQIK 63 (893)
Q Consensus 11 IDr~lKKV~EGve~Fd~i~eK~~---~a~n~nQKEKlE~DLKKEIKKLQR~RDQIK 63 (893)
-.+.+++|...|+..+++.+.|. ..-+.+.|..|...|+.--..|.+++.+++
T Consensus 23 r~~~i~~~e~~l~ea~~~l~qMe~E~~~~p~s~r~~~~~kl~~yr~~l~~lk~~l~ 78 (79)
T PF05008_consen 23 RKSLIREIERDLDEAEELLKQMELEVRSLPPSERNQYKSKLRSYRSELKKLKKELK 78 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCTS-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34455555555555555555554 222556777777776665555555555554
No 324
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=38.26 E-value=4e+02 Score=28.59 Aligned_cols=106 Identities=19% Similarity=0.230 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCCCchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 002678 81 EQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKK 160 (893)
Q Consensus 81 ~~~L~e~RKlIE~~MErFK~vEKesKtKafSkEGL~~~~k~DP~ekek~E~~~wL~~~IdeL~~QiE~~EaEiE~Ls~KK 160 (893)
-...+++-|++-+.||+|= ++|..+++.|-..- ...+-.|+..||.+|.-++.+-...
T Consensus 45 Ld~yL~yQKafnE~MekYL-------------e~lNlPSr~Diarv---------A~lvinlE~kvD~lee~fdd~~d~l 102 (189)
T TIGR02132 45 LDLNLFYQKALNDTTGNYL-------------EQVNVPTKEDIANV---------ASLVINLEEKVDLIEEFFDDKFDEL 102 (189)
T ss_pred HHHHHHHHHHHHHHHHHHH-------------HhCCCCCHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466789999999999982 35555544332111 1222233333333333333321111
Q ss_pred C------CCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhhhhhhhHHHHHHH
Q 002678 161 G------KTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVE 214 (893)
Q Consensus 161 ~------K~~~~r~~~le~~ierhk~Hi~kLE~lLRlLdN~~l~pe~V~~IKddieyYve 214 (893)
+ ..-..++..++. |.+.-=.|+..||++|+-..-.- +++||-|..-|.
T Consensus 103 ~~q~eq~~~~~~~v~~~~q---~~~~l~~K~D~~L~llE~~~~~~---~~~~~~~~~~~~ 156 (189)
T TIGR02132 103 EAQQEQAPALKKDVTKLKQ---DIKSLDKKLDKILELLEGQQKTQ---DELKETIQKQIK 156 (189)
T ss_pred HHHHhhCchHHhHHHHHHH---HHHHHHHHHHHHHHHHhcCccch---hHHHHHHHHHHh
Confidence 1 011123444443 34444467778999998765444 345555555554
No 325
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=38.08 E-value=2.3e+02 Score=24.29 Aligned_cols=41 Identities=20% Similarity=0.339 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhhhhhhhHHH
Q 002678 168 LTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLE 210 (893)
Q Consensus 168 ~~~le~~ierhk~Hi~kLE~lLRlLdN~~l~pe~V~~IKddie 210 (893)
...++.-|..|+-++..|...-..|.+.. +.....|++.++
T Consensus 43 ~~~~~~ei~~~~~~l~~l~~~~~~L~~~~--~~~~~~i~~~~~ 83 (105)
T PF00435_consen 43 HKELQEEIESRQERLESLNEQAQQLIDSG--PEDSDEIQEKLE 83 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTT--HTTHHHHHHHHH
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHcC--CCcHHHHHHHHH
Confidence 34556666666666666666655553332 333344444443
No 326
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=38.06 E-value=1.6e+02 Score=29.91 Aligned_cols=68 Identities=22% Similarity=0.291 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcccCC---------CCchhHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCC
Q 002678 131 TRDWLNNLVSELESQIDSFEAELEGLTVKKGK---------TRPPRLTHLETSITRHKAHIMKLELILRLLDNDELS 198 (893)
Q Consensus 131 ~~~wL~~~IdeL~~QiE~~EaEiE~Ls~KK~K---------~~~~r~~~le~~ierhk~Hi~kLE~lLRlLdN~~l~ 198 (893)
.++-|-+.+++...+++.+....+.++.|=.. ..+.|+.++...|...-.|...||.|.|.|.+....
T Consensus 15 ~~~~ll~~~~~~~~~l~~l~~~~~~Vs~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~L~yF~~Ld~itr~Ln~p~~s 91 (157)
T PF04136_consen 15 ECDQLLDQTDEILDQLDELQEQYNSVSEKTNSLHEACEQLLEEQTRLEELAEEISEKLQYFEELDPITRRLNSPGSS 91 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHcCCCCc
Confidence 34444445566666666666666555432110 235689999999999999999999999999988754
No 327
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=37.94 E-value=5.6e+02 Score=28.27 Aligned_cols=68 Identities=19% Similarity=0.281 Sum_probs=32.7
Q ss_pred HHHHHHHhhhhcccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhhhhhhhHHHHHHHhC
Q 002678 147 DSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERN 216 (893)
Q Consensus 147 E~~EaEiE~Ls~KK~K~~~~r~~~le~~ierhk~Hi~kLE~lLRlLdN~~l~pe~V~~IKddieyYve~n 216 (893)
+....++|.+..-+.|++.+| +.++.-++....-+.+.+..|| -|=++-.-+.+.|+|.-+-.|++.+
T Consensus 159 ~~~Q~~le~k~e~l~k~~~dr-~~~~~ev~~~e~kve~a~~~~k-~e~~Rf~~~k~~D~k~~~~~yae~~ 226 (243)
T cd07666 159 DQIQAELDSKVEALANKKADR-DLLKEEIEKLEDKVECANNALK-ADWERWKQNMQTDLRSAFTDMAENN 226 (243)
T ss_pred HHHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777643222223334 3444444433333333333333 1111123456667777777777655
No 328
>PF12889 DUF3829: Protein of unknown function (DUF3829); InterPro: IPR024291 This is a small family of proteins from several bacterial species, whose function is not known. It may, however, be related to the GvpL_GvpF family of proteins (PF06386 from PFAM).; PDB: 3RH3_B 3IEE_A.
Probab=37.88 E-value=5.2e+02 Score=27.44 Aligned_cols=29 Identities=21% Similarity=0.423 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHhHHHHHHhhccccccccc
Q 002678 47 DLKKEIKKLQRYRDQIKTWIQSSEIKDKK 75 (893)
Q Consensus 47 DLKKEIKKLQR~RDQIKtW~~s~eIKDK~ 75 (893)
+|-..+++|...-+.+.+.....+.||.+
T Consensus 80 ~l~~~l~~l~~~~~e~~~Yy~~k~Y~~D~ 108 (276)
T PF12889_consen 80 ELLPALKELYPLINELDSYYDSKDYKDDN 108 (276)
T ss_dssp HHHHHHHHHHHHHHHHHHH-----HHTT-
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhcCch
Confidence 55566667777777777776666666444
No 329
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=37.65 E-value=3.5e+02 Score=25.30 Aligned_cols=14 Identities=29% Similarity=0.479 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHH
Q 002678 43 KFEADLKKEIKKLQ 56 (893)
Q Consensus 43 KlE~DLKKEIKKLQ 56 (893)
..-..|++||.+||
T Consensus 8 ~~r~~LeqeV~~Lq 21 (88)
T PF14389_consen 8 ERRSALEQEVAELQ 21 (88)
T ss_pred hHHHHHHHHHHHHH
Confidence 44567888888888
No 330
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=37.63 E-value=35 Score=34.68 Aligned_cols=50 Identities=20% Similarity=0.337 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhCCCC--ChhhhhhhhhHHHHHHHhCCCCcc
Q 002678 170 HLETSITRHKAHIMKLELILRLLDNDEL--SPEQVNDVKDLLEDYVERNQDDFE 221 (893)
Q Consensus 170 ~le~~ierhk~Hi~kLE~lLRlLdN~~l--~pe~V~~IKddieyYve~nqddf~ 221 (893)
.|+..|...+.| .-..|+.+|+-+.| +.+.|..|.|-|+.+-|++..-|.
T Consensus 86 ai~~al~~akak--n~~av~allD~d~l~l~~dg~~Gldeqi~~lkes~~yLF~ 137 (155)
T PF06810_consen 86 AIKSALKGAKAK--NPKAVKALLDLDKLKLDDDGLKGLDEQIKALKESDPYLFE 137 (155)
T ss_pred HHHHHHHHcCCC--CHHHHHHhcCHHHeeeCCCccccHHHHHHHHHhcCchhcc
Confidence 455555554444 45678888888875 466788888888888887655443
No 331
>COG5394 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.62 E-value=2.2e+02 Score=30.14 Aligned_cols=93 Identities=23% Similarity=0.345 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhhcccccc-ccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCC
Q 002678 43 KFEADLKKEIKKLQRYRDQIKTWIQSSEIK-DKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKT 121 (893)
Q Consensus 43 KlE~DLKKEIKKLQR~RDQIKtW~~s~eIK-DK~~~~~~~~~L~e~RKlIE~~MErFK~vEKesKtKafSkEGL~~~~k~ 121 (893)
=||--++.=-|---|+|+|+|.-...+-+- |- .-+|.-+-..|-+.||-|.-. ++-||--.-..+.+.
T Consensus 99 yLE~smqaF~~qQs~lreq~~~~~~~~~~~~~~------~~p~~~~eeq~rrn~~mf~~a-----M~~f~pf~~~pa~~~ 167 (193)
T COG5394 99 YLEHSMQAFSDQQSRLREQMKKAFGGNPLGPNM------ATPLQMWEEQIRRNMEMFQQA-----MQMFSPFAKAPAPKE 167 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcc------cchHHHHHHHHHHhHHHHHHH-----HHhcCcccCCCCccc
Confidence 356666666677789999999999988654 31 227777777788888887543 344554443332332
Q ss_pred CchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002678 122 DPKEKAKSETRDWLNNLVSELESQIDSFEAELEG 155 (893)
Q Consensus 122 DP~ekek~E~~~wL~~~IdeL~~QiE~~EaEiE~ 155 (893)
-|++ ..+-|++|..|+..+...+++
T Consensus 168 ~~~~---------~~~d~~~lk~ql~a~Q~kldk 192 (193)
T COG5394 168 APKP---------MSDDLDELKGQLRAMQPKLDK 192 (193)
T ss_pred cCcc---------chhHHHHHHHHHHHhhhhhcc
Confidence 2222 224477777777776655543
No 332
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=37.51 E-value=1.7e+02 Score=35.72 Aligned_cols=48 Identities=27% Similarity=0.374 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHH-----hHHHHHHhhccccccccccchhhHHHHHHHHHHHHHHHH
Q 002678 46 ADLKKEIKKLQR-----YRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREME 96 (893)
Q Consensus 46 ~DLKKEIKKLQR-----~RDQIKtW~~s~eIKDK~~~~~~~~~L~e~RKlIE~~ME 96 (893)
.+|+-|++|.+| .||..|.=++.. |+|=+ |-|+.....+|+-||...+
T Consensus 222 ~eI~e~~~~~~rd~t~~~r~~F~~eL~~A-i~eiR--aqye~~~~~nR~diE~~Y~ 274 (546)
T KOG0977|consen 222 QEIEEERRKARRDTTADNREYFKNELALA-IREIR--AQYEAISRQNRKDIESWYK 274 (546)
T ss_pred HHHHHHHHHHhhcccccchHHHHHHHHHH-HHHHH--HHHHHHHHHhHHHHHHHHH
Confidence 344444444443 234455444432 23322 4577777777777776444
No 333
>KOG2273 consensus Membrane coat complex Retromer, subunit VPS5/SNX1, Sorting nexins, and related PX domain-containing proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.40 E-value=7.6e+02 Score=29.17 Aligned_cols=34 Identities=21% Similarity=0.354 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhCCCCChhhhhhhhhHHHHHHHhCCC
Q 002678 173 TSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQD 218 (893)
Q Consensus 173 ~~ierhk~Hi~kLE~lLRlLdN~~l~pe~V~~IKddieyYve~nqd 218 (893)
...++.+.++.+++. .+..+++.-+..|.+.+-+
T Consensus 449 ~i~~~~~~e~~~f~~------------~~~~d~~~~~~~~~d~~i~ 482 (503)
T KOG2273|consen 449 EISERIRAELERFEE------------SRRQDFKESLKKYADLHVE 482 (503)
T ss_pred HHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHH
Confidence 444555555555554 5556666666666665533
No 334
>PF05565 Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840 This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophage. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage [].
Probab=37.37 E-value=2.1e+02 Score=29.17 Aligned_cols=17 Identities=35% Similarity=0.612 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 002678 83 ALVDARKLIEREMERFK 99 (893)
Q Consensus 83 ~L~e~RKlIE~~MErFK 99 (893)
.|.+.+|.+|.+.+++|
T Consensus 65 rL~~rkk~~e~~~~~Lk 81 (162)
T PF05565_consen 65 RLQERKKSIENRIDRLK 81 (162)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45555555555555544
No 335
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=37.04 E-value=9.4e+02 Score=30.15 Aligned_cols=140 Identities=21% Similarity=0.215 Sum_probs=69.7
Q ss_pred hhHHHHHHHHHHHHHHHHH-hHHHHHHhhccccccccccchhhHHHHHHHHHHHHH---HHHHHHHHHhhh------ccc
Q 002678 39 NQKEKFEADLKKEIKKLQR-YRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIER---EMERFKICEKET------KTK 108 (893)
Q Consensus 39 nQKEKlE~DLKKEIKKLQR-~RDQIKtW~~s~eIKDK~~~~~~~~~L~e~RKlIE~---~MErFK~vEKes------KtK 108 (893)
+|||+.=..|-.+|+.+|. ++.-+-+|.+- | ..+++.|..++.-||+ +.+.|+++|..- |.=
T Consensus 288 ~~kd~~i~~L~~di~~~~~S~~~e~e~~~~q--I------~~le~~l~~~~~~leel~~kL~~~sDYeeIK~ELsiLk~i 359 (629)
T KOG0963|consen 288 NQKDSEIAQLSNDIERLEASLVEEREKHKAQ--I------SALEKELKAKISELEELKEKLNSRSDYEEIKKELSILKAI 359 (629)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H------HHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHh
Confidence 3466666666666666653 34444455432 2 2244555556655554 444555555432 222
Q ss_pred ccc-ccccCCCC-CCCchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCchhHHHHHHHHHHHHHHHHHHH
Q 002678 109 AFS-KEGLGQQP-KTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLE 186 (893)
Q Consensus 109 afS-kEGL~~~~-k~DP~ekek~E~~~wL~~~IdeL~~QiE~~EaEiE~Ls~KK~K~~~~r~~~le~~ierhk~Hi~kLE 186 (893)
-|+ .++-...+ ...+.|.--.+...+|.+-.-.|+.+...+..++..+. .+.+++.....--+.-|.+||
T Consensus 360 ef~~se~a~~~~~~~~~leslLl~knr~lq~e~a~Lr~~n~~~~~~~~~~~--------~~~~el~~~~~~~ke~i~klE 431 (629)
T KOG0963|consen 360 EFGDSEEANDEDETAKTLESLLLEKNRKLQNENASLRVANSGLSGRITELS--------KKGEELEAKATEQKELIAKLE 431 (629)
T ss_pred hcCCcccccccccccchHHHHHHHHHhhhhHHHHHHhccccccchhHHHHH--------hhhhhhHHHHHHHHHHHHHHH
Confidence 344 33333321 12233333334445555555555555555555554441 233555555555666667777
Q ss_pred HHHHhhhC
Q 002678 187 LILRLLDN 194 (893)
Q Consensus 187 ~lLRlLdN 194 (893)
.=|+-+++
T Consensus 432 ~dl~~~~~ 439 (629)
T KOG0963|consen 432 QDLLKVQV 439 (629)
T ss_pred hhHhhccc
Confidence 65554443
No 336
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=36.95 E-value=8.2e+02 Score=29.47 Aligned_cols=22 Identities=18% Similarity=0.546 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHH
Q 002678 41 KEKFEADLKKEIKKLQRYRDQI 62 (893)
Q Consensus 41 KEKlE~DLKKEIKKLQR~RDQI 62 (893)
+..|+..|+.-=++|++|+++|
T Consensus 213 ~~~~~~~leeae~~l~~L~~e~ 234 (522)
T PF05701_consen 213 AEEWEKELEEAEEELEELKEEL 234 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667777778899999998
No 337
>PRK10869 recombination and repair protein; Provisional
Probab=36.94 E-value=4.6e+02 Score=31.75 Aligned_cols=24 Identities=17% Similarity=0.217 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 002678 130 ETRDWLNNLVSELESQIDSFEAEL 153 (893)
Q Consensus 130 E~~~wL~~~IdeL~~QiE~~EaEi 153 (893)
++..-|.++.++|+...+.++.+-
T Consensus 272 ~~~~~l~~~~~~l~~~~~~~~~dp 295 (553)
T PRK10869 272 EALIQIQEASDELRHYLDRLDLDP 295 (553)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCH
Confidence 355556677777776666554433
No 338
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=36.91 E-value=5.1e+02 Score=27.46 Aligned_cols=119 Identities=27% Similarity=0.306 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhHHHHHHhhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCCCchH
Q 002678 46 ADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKE 125 (893)
Q Consensus 46 ~DLKKEIKKLQR~RDQIKtW~~s~eIKDK~~~~~~~~~L~e~RKlIE~~MErFK~vEKesKtKafSkEGL~~~~k~DP~e 125 (893)
.+|=.+|+||| +.+-|..++.-|+.|..+|+ =+|.=.-|.. +=
T Consensus 53 ~~l~e~v~~l~---------------------------idd~~~~f~~~~~tl~~LE~----~GFnV~~l~~------RL 95 (190)
T PF05266_consen 53 ANLAEKVKKLQ---------------------------IDDSRSSFESLMKTLSELEE----HGFNVKFLRS------RL 95 (190)
T ss_pred HHHHHHHHHcc---------------------------cCCcHHHHHHHHHHHHHHHH----cCCccHHHHH------HH
Q ss_pred HhHHHHHH---HHHHHHHHHHHHHHHHHHHHhhhhcccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhh
Q 002678 126 KAKSETRD---WLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELSPEQV 202 (893)
Q Consensus 126 kek~E~~~---wL~~~IdeL~~QiE~~EaEiE~Ls~KK~K~~~~r~~~le~~ierhk~Hi~kLE~lLRlLdN~~l~pe~V 202 (893)
.+.....+ =+.+....|+.+++.-+++..++ ...+.+|+..|...++|...|.......+ .+|
T Consensus 96 ~kLL~lk~~~~~~~e~~k~le~~~~~~~~~~~~~--------e~~i~~Le~ki~el~~~~~~~~~~ke~~~------~ei 161 (190)
T PF05266_consen 96 NKLLSLKDDQEKLLEERKKLEKKIEEKEAELKEL--------ESEIKELEMKILELQRQAAKLKEKKEAKD------KEI 161 (190)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHH
Q ss_pred hhhhhHHHHHHHh
Q 002678 203 NDVKDLLEDYVER 215 (893)
Q Consensus 203 ~~IKddieyYve~ 215 (893)
..+|-+++.+.++
T Consensus 162 ~~lks~~~~l~~~ 174 (190)
T PF05266_consen 162 SRLKSEAEALKEE 174 (190)
T ss_pred HHHHHHHHHHHHH
No 339
>cd08915 V_Alix_like Protein-interacting V-domain of mammalian Alix and related domains. This superfamily contains the V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Bro1, and Rim20 all interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. The Alix V-domain contains
Probab=36.85 E-value=6.5e+02 Score=28.21 Aligned_cols=16 Identities=38% Similarity=0.526 Sum_probs=9.8
Q ss_pred hhhhhhhhhHHHHHHH
Q 002678 199 PEQVNDVKDLLEDYVE 214 (893)
Q Consensus 199 pe~V~~IKddieyYve 214 (893)
.+.|..++.+++.||.
T Consensus 325 ~~~~~~l~~~~~~f~~ 340 (342)
T cd08915 325 IEKVNRLLEECEDFVN 340 (342)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3455566677777763
No 340
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=36.84 E-value=4.5e+02 Score=33.30 Aligned_cols=23 Identities=13% Similarity=0.228 Sum_probs=12.8
Q ss_pred HHHHhhhHHHhHHHHHHHHHHhh
Q 002678 11 IDRVLKKVQEGVDVFDSIWNKVY 33 (893)
Q Consensus 11 IDr~lKKV~EGve~Fd~i~eK~~ 33 (893)
|+|.-+.+.++-..++.+.++++
T Consensus 504 i~~A~~~~~~~~~~~~~li~~l~ 526 (782)
T PRK00409 504 IEEAKKLIGEDKEKLNELIASLE 526 (782)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHH
Confidence 44555555555556666666654
No 341
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=36.67 E-value=1.9e+02 Score=25.95 Aligned_cols=31 Identities=13% Similarity=0.243 Sum_probs=25.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002678 126 KAKSETRDWLNNLVSELESQIDSFEAELEGL 156 (893)
Q Consensus 126 kek~E~~~wL~~~IdeL~~QiE~~EaEiE~L 156 (893)
........+|...|..+..+++.++.+++.+
T Consensus 48 ~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ 78 (123)
T PF02050_consen 48 RNYQRYISALEQAIQQQQQELERLEQEVEQA 78 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446678888889999999999999998886
No 342
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=36.42 E-value=9.4e+02 Score=30.56 Aligned_cols=180 Identities=21% Similarity=0.240 Sum_probs=85.2
Q ss_pred hHHHHhhhHHHhHHHHHHHHHHh------hcCCCchhHHHHHHHHHHHHHHHHHhHHHHHHhhccc--cccccccchhhH
Q 002678 10 EIDRVLKKVQEGVDVFDSIWNKV------YDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSS--EIKDKKVSASYE 81 (893)
Q Consensus 10 EIDr~lKKV~EGve~Fd~i~eK~------~~a~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~--eIKDK~~~~~~~ 81 (893)
++++-.-|..+....+++++..+ +..-...|+.|++--++.|+-- ++.+++.|...- +++ |.+-.-.+
T Consensus 354 ~~~~e~~k~~di~~~k~el~~~~~~~le~~k~~~ke~~~~~~~ka~~E~e~---l~q~l~~~~k~e~~e~~-k~~~d~~~ 429 (698)
T KOG0978|consen 354 EKDRESQKERDILVAKSELLKTNELRLEMLKSLLKEQRDKLQVKARAETES---LLQRLKALDKEERSEIR-KQALDDAE 429 (698)
T ss_pred HHHHHhhhhHhHHHHHHHHHHHHHHHHHHHhCCCHHHHhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH-hhhhHHHH
Confidence 45556666677778888877742 2444556666666434444322 233333333221 110 01000000
Q ss_pred ---HHHHHHHHHHHHHHHHHH--HHHhhhccccccccc-----cCC--CCCCCc-------------hHHhHHHHHHHHH
Q 002678 82 ---QALVDARKLIEREMERFK--ICEKETKTKAFSKEG-----LGQ--QPKTDP-------------KEKAKSETRDWLN 136 (893)
Q Consensus 82 ---~~L~e~RKlIE~~MErFK--~vEKesKtKafSkEG-----L~~--~~k~DP-------------~ekek~E~~~wL~ 136 (893)
..+.+.-+-|...++-|| .+|-++..-||...= |.. ..+.|- .-+.-.+...=|.
T Consensus 430 r~~~~~~~~~e~Lqk~~~~~k~ll~e~~t~gsA~ed~Qeqn~kL~~el~ekdd~nfklm~e~~~~~q~~k~L~~ek~~l~ 509 (698)
T KOG0978|consen 430 RQIRQVEELSEELQKKEKNFKCLLSEMETIGSAFEDMQEQNQKLLQELREKDDKNFKLMSERIKANQKHKLLREEKSKLE 509 (698)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 033444445555677777 444455555565410 000 001110 0122223344455
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcc--cC----CCCchhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002678 137 NLVSELESQIDSFEAELEGLTVK--KG----KTRPPRLTHLETSITRHKAHIMKLELILRLLD 193 (893)
Q Consensus 137 ~~IdeL~~QiE~~EaEiE~Ls~K--K~----K~~~~r~~~le~~ierhk~Hi~kLE~lLRlLd 193 (893)
..|-+|..+++.++..+-.|..+ .. .+....+..+...++.|++|+..+..-++-|.
T Consensus 510 ~~i~~l~~~~~~~~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq 572 (698)
T KOG0978|consen 510 EQILTLKASVDKLELKIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQ 572 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666666666665554221 00 01123455566677888888877777666554
No 343
>PRK13415 flagella biosynthesis protein FliZ; Provisional
Probab=36.33 E-value=74 Score=34.55 Aligned_cols=52 Identities=27% Similarity=0.416 Sum_probs=36.2
Q ss_pred hhHHHHhhhHHHhHHHHHHHHH----H----hhc---CCCchhHHHHHHHHHHHHHHHHHhHHHH
Q 002678 9 GEIDRVLKKVQEGVDVFDSIWN----K----VYD---TDNANQKEKFEADLKKEIKKLQRYRDQI 62 (893)
Q Consensus 9 ~EIDr~lKKV~EGve~Fd~i~e----K----~~~---a~n~nQKEKlE~DLKKEIKKLQR~RDQI 62 (893)
+||+.++.+=+|..+...+ |. | +.. ..+.+ -+-|..-||+||+.|.+-|+.+
T Consensus 144 ~eve~il~~~e~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~-~~sF~~~l~~ql~~l~~~r~e~ 206 (219)
T PRK13415 144 KEIEEILAQHEERLESKAE-WSRWGQKLRDQWKGKSKQKQTT-LPSFSALLKEELKELKEKRSEG 206 (219)
T ss_pred HHHHHHHHHHHHhhhhhhc-hHHHHHHHHHhhhccccCCCCC-CccHHHHHHHHHHHHHHHHHHH
Confidence 6899999988887655444 42 2 111 12222 3779999999999999988876
No 344
>PF00489 IL6: Interleukin-6/G-CSF/MGF family; InterPro: IPR003573 Interleukin-6 (IL6), also refered to as B-cell stimulatory factor-2 (BSF-2) and interferon beta-2, is a cytokine involved in a wide variety of biological functions []. It plays an essential role in the final differentiation of B-cells into IG-secreting cells, as well as inducing myeloma/plasmacytoma growth, nerve cell differentiation and, in hepatocytes, acute phase reactants [, ]. A number of other cytokines may be grouped with IL6 on the basis of sequence similarity [, , ]: these include granulocyte colony-stimulating factor (GCSF) and myelomonocytic growth factor (MGF). GCSF acts in hematopoiesis by affecting the production, differentiation and function of 2 related white cell groups in the blood []. MGF also acts in hematopoiesis, stimulating proliferation and colony formation of normal and transformed avian cells of the myeloid lineage. Cytokines of the IL6/GCSF/MGF family are glycoproteins of about 170 to 180 amino acid residues that contains four conserved cysteine residues involved in two disulphide bonds []. They have a compact, globular fold (similar to other interleukins), stabilised by the 2 disulphide bonds. One half of the structure is dominated by a 4 alpha-helix bundle with a left-handed twist []: the helices are anti-parallel, with 2 overhand connections, which fall into a 2-stranded anti-parallel beta-sheet. The fourth alpha-helix is important to the biological activity of the molecule []. It has been said [] that this family can be extended by the adjunction of LIF and OSM (see the relevant entry IPR001581 from INTERPRO) which seem to be structurally related.; GO: 0005125 cytokine activity, 0006955 immune response, 0005576 extracellular region; PDB: 1P9M_B 2IL6_A 1IL6_A 1ALU_A 3QWR_B 3DUH_C 3D85_C 3D87_C 1BGC_A 2L3Y_A ....
Probab=36.18 E-value=1.4e+02 Score=30.43 Aligned_cols=53 Identities=17% Similarity=0.314 Sum_probs=35.3
Q ss_pred HHHHhhhHHHhHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHH-HHhHHHHHHh
Q 002678 11 IDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKL-QRYRDQIKTW 65 (893)
Q Consensus 11 IDr~lKKV~EGve~Fd~i~eK~~~a~n~nQKEKlE~DLKKEIKKL-QR~RDQIKtW 65 (893)
-|.||.||..|+-.|..+++-++.. ...-++.. .+|+.-++-| +-+++++|.+
T Consensus 52 ~e~CL~ri~~GL~~yq~lL~~l~~~-~~~~~~~v-~~Lq~~~~~L~~~i~~~~~~~ 105 (154)
T PF00489_consen 52 KETCLSRIHSGLQEYQILLKYLQGE-FPGLKENV-ESLQLDTKDLAQTIKQKMKNP 105 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTS-STTTHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh-CccchhHH-HHHHHHHHHHHHHHHHHhhcc
Confidence 3789999999999999999877654 33333333 3555555554 4455566654
No 345
>KOG4429 consensus Uncharacterized conserved protein, contains SH3 and FCH domains [General function prediction only]
Probab=35.90 E-value=3.5e+02 Score=31.08 Aligned_cols=27 Identities=26% Similarity=0.277 Sum_probs=21.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002678 166 PRLTHLETSITRHKAHIMKLELILRLL 192 (893)
Q Consensus 166 ~r~~~le~~ierhk~Hi~kLE~lLRlL 192 (893)
+||+++...+.+.+.||.-|=.-||-.
T Consensus 140 eRia~~cnaL~qYkqhIelfG~nLrqc 166 (421)
T KOG4429|consen 140 ERIAHCCNALGQYKQHIELFGPNLRQC 166 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHhCchHHHH
Confidence 488999999999999998766656543
No 346
>PF03528 Rabaptin: Rabaptin; InterPro: IPR018514 Regeneration of injured axons at neuromuscular junctions has been assumed to be regulated by extra-cellular factors that promote neurite outgrowth. A novel neurite outgrowth factor from chick denervated skeletal muscle has been cloned and characterised. The protein, termed neurocrescin (rabaptin), has been shown to be secreted in an activity-dependent fashion [].Rabaptin is a 100kDa coiled-coil protein that interacts with the GTP form of the small GTPase Rab5, a potent regulator of endocytic transport []. It is mainly cytosolic, but a fraction co-localises with Rab5 to early endosomes. Rab5 recruits rabaptin-5 to purified early endosomes in a GTP-dependent manner, demonstrating functional similarities with other members of the Ras superfamily. Immunodepletion of rabaptin-5 from cytosol strongly inhibits Rab5-dependent early endosome fusion. Thus, rabaptin-5 is a Rab effector required for membrane docking and fusion.; GO: 0005096 GTPase activator activity, 0008083 growth factor activity; PDB: 1X79_C.
Probab=35.55 E-value=1.5e+02 Score=29.00 Aligned_cols=33 Identities=18% Similarity=0.402 Sum_probs=0.0
Q ss_pred cccchhhhHHHHhhhHHHhHHHHHHHHHHhhcC
Q 002678 3 ASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDT 35 (893)
Q Consensus 3 a~RKLQ~EIDr~lKKV~EGve~Fd~i~eK~~~a 35 (893)
.+|+-|.||-.+.-.|.+++..||.-|..|+.-
T Consensus 18 ~~r~~qEEvASLq~i~k~tv~~ye~~~~~LeqE 50 (106)
T PF03528_consen 18 VQRQWQEEVASLQAILKETVSEYETQWSLLEQE 50 (106)
T ss_dssp ---------------------------------
T ss_pred HHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 468888999999999999999998888876543
No 347
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=35.48 E-value=2.2e+02 Score=28.24 Aligned_cols=83 Identities=19% Similarity=0.350 Sum_probs=42.7
Q ss_pred cchhhhHHHHhhhHHHhHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhHHHHHH---hhccccccccccchhhH
Q 002678 5 RKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKT---WIQSSEIKDKKVSASYE 81 (893)
Q Consensus 5 RKLQ~EIDr~lKKV~EGve~Fd~i~eK~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQIKt---W~~s~eIKDK~~~~~~~ 81 (893)
|+|..||++.-..|..--+-.+..-.++... .+.--.++..++.+.++|...+|.+.. |+.. ++
T Consensus 62 ~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~--~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~--~~--------- 128 (151)
T PF11559_consen 62 RRLRSDIERLQNDVERLKEQLEELERELASA--EEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQ--RK--------- 128 (151)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH---------
Confidence 4556666665555544444444433333211 222334566666677777777776543 3332 11
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 002678 82 QALVDARKLIEREMERFKI 100 (893)
Q Consensus 82 ~~L~e~RKlIE~~MErFK~ 100 (893)
....--.|..|.+|++.|.
T Consensus 129 tq~~~e~rkke~E~~kLk~ 147 (151)
T PF11559_consen 129 TQYEHELRKKEREIEKLKE 147 (151)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 1334444556777777663
No 348
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=35.41 E-value=3.6e+02 Score=30.63 Aligned_cols=31 Identities=23% Similarity=0.395 Sum_probs=19.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002678 126 KAKSETRDWLNNLVSELESQIDSFEAELEGL 156 (893)
Q Consensus 126 kek~E~~~wL~~~IdeL~~QiE~~EaEiE~L 156 (893)
.-|.--..||...+.....|||.+|.|+-.+
T Consensus 91 q~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~ 121 (307)
T PF10481_consen 91 QVKESQVNFLEGQLNSCKKQIEKLEQELKRC 121 (307)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556677666666666666666666444
No 349
>PF09074 Mer2: Mer2; InterPro: IPR015159 Meiotic recombination 2 protein (Mer2) also known as Rec107, forms part of a complex that is required for meiotic double strand DNA break formation. Mer2 increases in abundance and is phosphorylated during the prophase phase of cell division []. MER2 is not required for mitosis and mitotic DNA repair mechanisms and is a component of the MER2-MEI4-REC114 complex which seems to be required for meiotic double-strand break (DSB) formation []. ; GO: 0007131 reciprocal meiotic recombination, 0000794 condensed nuclear chromosome
Probab=35.41 E-value=2.7e+02 Score=29.91 Aligned_cols=26 Identities=8% Similarity=0.266 Sum_probs=21.1
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHH
Q 002678 124 KEKAKSETRDWLNNLVSELESQIDSF 149 (893)
Q Consensus 124 ~ekek~E~~~wL~~~IdeL~~QiE~~ 149 (893)
+..+-....+++.+++-....|+|.+
T Consensus 143 ~q~~~~ks~~~tq~~l~N~~~QLe~~ 168 (190)
T PF09074_consen 143 RQQKIMKSFDCTQEMLFNVSCQLEDM 168 (190)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556678889999999999999887
No 350
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=35.34 E-value=1.8e+02 Score=26.98 Aligned_cols=46 Identities=15% Similarity=0.310 Sum_probs=36.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhCC----CCChhhhhhhhhHHHHH
Q 002678 167 RLTHLETSITRHKAHIMKLELILRLLDND----ELSPEQVNDVKDLLEDY 212 (893)
Q Consensus 167 r~~~le~~ierhk~Hi~kLE~lLRlLdN~----~l~pe~V~~IKddieyY 212 (893)
-..+|+..++-.+|-+.-||.-++.++.+ .|++++|..-|.-|...
T Consensus 40 ~~~eL~~~l~~ie~~L~DL~~aV~ive~np~kF~l~~~Ei~~Rr~fv~~~ 89 (97)
T PF09177_consen 40 LKRELRNALQSIEWDLEDLEEAVRIVEKNPSKFNLSEEEISRRRQFVSAI 89 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCCHHHHHHHHHHHHHH
Confidence 35678888999999999999999999998 78888888777666543
No 351
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=35.27 E-value=1.4e+02 Score=29.55 Aligned_cols=37 Identities=19% Similarity=0.322 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHhhhCCCCChhhhhhhhhHHHHHHHh
Q 002678 176 TRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVER 215 (893)
Q Consensus 176 erhk~Hi~kLE~lLRlLdN~~l~pe~V~~IKddieyYve~ 215 (893)
..++.-..|.+.+|-||=- -.|+|+++|.||...-+.
T Consensus 75 ~el~~l~~ry~t~LellGE---K~E~veEL~~Dv~DlK~m 111 (120)
T PF12325_consen 75 QELEELQQRYQTLLELLGE---KSEEVEELRADVQDLKEM 111 (120)
T ss_pred HHHHHHHHHHHHHHHHhcc---hHHHHHHHHHHHHHHHHH
Confidence 4444555566666666532 368899999998876543
No 352
>PRK11820 hypothetical protein; Provisional
Probab=35.11 E-value=4.6e+02 Score=29.49 Aligned_cols=111 Identities=17% Similarity=0.297 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHhhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCC
Q 002678 42 EKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKT 121 (893)
Q Consensus 42 EKlE~DLKKEIKKLQR~RDQIKtW~~s~eIKDK~~~~~~~~~L~e~RKlIE~~MErFK~vEKesKtKafSkEGL~~~~k~ 121 (893)
++|..||..-|.+|..+-++|+.-. +..+.++|+.+..+|+.+- . ..
T Consensus 151 ~~L~~dl~~rl~~i~~~~~~i~~~~--------------p~~~~~~~~rL~~rl~el~--~-----------------~~ 197 (288)
T PRK11820 151 AALKADLLQRLDAIEALVAKIEALA--------------PEILEEYRERLRERLEELL--G-----------------EL 197 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc--------------hHHHHHHHHHHHHHHHHHH--h-----------------hc
Confidence 4788888888888888888876543 3388999999999998872 0 12
Q ss_pred CchHHhHHHHHHH-----HHHHHHHHHHHHHHHHHHHhhhh--ccc---------------C-CCCc----hhHHHHHHH
Q 002678 122 DPKEKAKSETRDW-----LNNLVSELESQIDSFEAELEGLT--VKK---------------G-KTRP----PRLTHLETS 174 (893)
Q Consensus 122 DP~ekek~E~~~w-----L~~~IdeL~~QiE~~EaEiE~Ls--~KK---------------~-K~~~----~r~~~le~~ 174 (893)
|+ ..--+|+.=| ++.=|.-|+..++.|+.-++.-. .|| | |... .-+-+++..
T Consensus 198 d~-~Rl~qEval~adK~DI~EEi~RL~sHl~~f~~~L~~~~~vGrkLDFL~QEm~RE~NTigSKs~~~~is~~vVe~K~e 276 (288)
T PRK11820 198 DE-NRLEQEVALLAQKADIAEELDRLKSHLKEFREILKKGGPVGRKLDFLMQELNREANTLGSKSNDAEITNLVVELKVL 276 (288)
T ss_pred CH-HHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHhcCCCCCcchhHHHHHHhHHHHHHHHccCcHHHHHHHHHHHHH
Confidence 44 3333444333 34557778888888888876531 111 0 1111 134556667
Q ss_pred HHHHHHHHHHHH
Q 002678 175 ITRHKAHIMKLE 186 (893)
Q Consensus 175 ierhk~Hi~kLE 186 (893)
||+-|.+|.++|
T Consensus 277 lEkiREQVQNIE 288 (288)
T PRK11820 277 IEQMREQVQNIE 288 (288)
T ss_pred HHHHHHHHhcCC
Confidence 777777776654
No 353
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=34.84 E-value=2.3e+02 Score=24.90 Aligned_cols=58 Identities=14% Similarity=0.219 Sum_probs=43.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 002678 126 KAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILR 190 (893)
Q Consensus 126 kek~E~~~wL~~~IdeL~~QiE~~EaEiE~Ls~KK~K~~~~r~~~le~~ierhk~Hi~kLE~lLR 190 (893)
.+|..+..=+...|++.+.-|+++|.|+-.+.. .....+...+..|+-.+.+|+.=|+
T Consensus 21 ~~r~~~i~~~e~~l~ea~~~l~qMe~E~~~~p~-------s~r~~~~~kl~~yr~~l~~lk~~l~ 78 (79)
T PF05008_consen 21 EQRKSLIREIERDLDEAEELLKQMELEVRSLPP-------SERNQYKSKLRSYRSELKKLKKELK 78 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-H-------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH-------HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 367778888889999999999999999877621 2335677777778877777776554
No 354
>cd00089 HR1 Protein kinase C-related kinase homology region 1 domain; also known as the ACC (antiparallel coiled-coil) finger domain or Rho-binding domain. Found in vertebrate PRK1 and yeast PKC1 protein kinases C; those found in rhophilin bind RhoGTP; those in PRK1 bind RhoA and RhoB. Rho family members function as molecular switches, cycling between inactive and active forms, controlling a variety of cellular processes. HR1 repeats often occur in tandem repeat arrangments, seperated by a short linker region.
Probab=34.75 E-value=1.9e+02 Score=25.52 Aligned_cols=26 Identities=19% Similarity=0.202 Sum_probs=15.3
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHh
Q 002678 40 QKEKFEADLKKEIKKLQRYRDQIKTW 65 (893)
Q Consensus 40 QKEKlE~DLKKEIKKLQR~RDQIKtW 65 (893)
..+..|..|.---.||+.+|.+|+..
T Consensus 43 ~~~~~~~~l~es~~ki~~Lr~~L~k~ 68 (72)
T cd00089 43 LLAEAEQMLRESKQKLELLKMQLEKL 68 (72)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555665666666666666543
No 355
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=34.70 E-value=1.7e+02 Score=30.39 Aligned_cols=55 Identities=16% Similarity=0.280 Sum_probs=38.7
Q ss_pred hHHHHhhhHHHhHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhHHHHHHhh
Q 002678 10 EIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWI 66 (893)
Q Consensus 10 EIDr~lKKV~EGve~Fd~i~eK~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW~ 66 (893)
+.|+.|++--+-+.....++.+|.... ++-+.++..+|.-+++|..+|.-|.+-+
T Consensus 9 ~~d~~L~~~L~~l~~hq~~~~~I~~L~--~e~~~ld~~i~~~~~~L~~~~~~L~~~~ 63 (188)
T PF10018_consen 9 EADDELSSALEELQEHQENQARIQQLR--AEIEELDEQIRDILKQLKEARKELRTLP 63 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555666677765443 2346677889999999999999999988
No 356
>PF05852 DUF848: Gammaherpesvirus protein of unknown function (DUF848); InterPro: IPR008566 This family consists of several uncharacterised proteins from the Gammaherpesvirinae.
Probab=34.57 E-value=1.7e+02 Score=30.15 Aligned_cols=23 Identities=39% Similarity=0.439 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 002678 134 WLNNLVSELESQIDSFEAELEGL 156 (893)
Q Consensus 134 wL~~~IdeL~~QiE~~EaEiE~L 156 (893)
=+.+.|..|+..|+....|++.|
T Consensus 58 ~~~~~v~~~~~~i~~k~~El~~L 80 (146)
T PF05852_consen 58 EIKNKVSSLETEISEKKKELSHL 80 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678888888888888887776
No 357
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=34.30 E-value=1.5e+02 Score=30.25 Aligned_cols=82 Identities=26% Similarity=0.300 Sum_probs=51.3
Q ss_pred HHhhhccccccccccCCCCCCCchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc------CCCCchhHHHHHHH
Q 002678 101 CEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKK------GKTRPPRLTHLETS 174 (893)
Q Consensus 101 vEKesKtKafSkEGL~~~~k~DP~ekek~E~~~wL~~~IdeL~~QiE~~EaEiE~Ls~KK------~K~~~~r~~~le~~ 174 (893)
+||+--+-.=.++.+.. |. +-.|.+ +.=|..-|+.+..-...++.|+..++.-| -.+.+.||.+|+..
T Consensus 29 LEreLe~~q~~~e~~~~----da-En~k~e-ie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~ 102 (140)
T PF10473_consen 29 LERELEMSQENKECLIL----DA-ENSKAE-IETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESL 102 (140)
T ss_pred HHHHHHHHHHhHHHHHH----HH-HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444455543 22 333333 34477888888888888888888885422 12345688888888
Q ss_pred HHHHHHHHHHHHHH
Q 002678 175 ITRHKAHIMKLELI 188 (893)
Q Consensus 175 ierhk~Hi~kLE~l 188 (893)
..-...||..+|.-
T Consensus 103 ~~~~~~~l~~~E~e 116 (140)
T PF10473_consen 103 NSSLENLLQEKEQE 116 (140)
T ss_pred hHHHHHHHHHHHHH
Confidence 87777777777765
No 358
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=34.28 E-value=3.3e+02 Score=26.65 Aligned_cols=59 Identities=19% Similarity=0.283 Sum_probs=25.8
Q ss_pred hHHHHhhhHHHhHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhHHHHHHhhcccccccc
Q 002678 10 EIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDK 74 (893)
Q Consensus 10 EIDr~lKKV~EGve~Fd~i~eK~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~eIKDK 74 (893)
+++++|....+|-+.-..+=++.. .-..+-+..+.+|+++.++||+.+. .++..+.+.+
T Consensus 23 d~~~v~~~~~~~k~~~~~l~~~~~--~~~~~l~~~~~el~~~~~~l~~~~~----~ls~~~~~~~ 81 (158)
T PF03938_consen 23 DVDKVFQESPAGKDAQAKLQEKFK--ALQKELQAKQKELQKLQQKLQSQKA----TLSEEERQKR 81 (158)
T ss_dssp -HHHHHHHHHHHHTHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHTTS--------SSHHHHHH
T ss_pred eHHHHHHhCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhh----ccchhHHHHH
Confidence 466677666665554444333321 0122334445555555555555433 5555554443
No 359
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=34.01 E-value=3.5e+02 Score=28.28 Aligned_cols=93 Identities=14% Similarity=0.162 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHhhhccccccccccCCCCCCCchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCchhH
Q 002678 89 KLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRL 168 (893)
Q Consensus 89 KlIE~~MErFK~vEKesKtKafSkEGL~~~~k~DP~ekek~E~~~wL~~~IdeL~~QiE~~EaEiE~Ls~KK~K~~~~r~ 168 (893)
+-|+.-|||+-++|-+.-.=.-+-+|... ...=+.+-|+.|+..|+.++..+|-++.+-.-=+..-.
T Consensus 44 e~id~imer~~~ieNdlg~~~~~~~g~kk-------------~~~~~~eelerLe~~iKdl~~lye~Vs~d~Npf~s~~~ 110 (157)
T COG3352 44 EVIDAIMERMTDIENDLGKVKIEIEGQKK-------------QLQDIKEELERLEENIKDLVSLYELVSRDFNPFMSKTP 110 (157)
T ss_pred HHHHHHHHHHHHHHhhcccccccccchhh-------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhhH
Confidence 45666777777776553211112222211 11123455677777777777777777544221110011
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhC
Q 002678 169 THLETSITRHKAHIMKLELILRLLDN 194 (893)
Q Consensus 169 ~~le~~ierhk~Hi~kLE~lLRlLdN 194 (893)
++++..++-..-.|.+|+.|+.++-+
T Consensus 111 qes~~~veel~eqV~el~~i~emv~~ 136 (157)
T COG3352 111 QESRGIVEELEEQVNELKMIVEMVIK 136 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 12222334444445555555555444
No 360
>PRK13411 molecular chaperone DnaK; Provisional
Probab=33.73 E-value=1.5e+02 Score=36.41 Aligned_cols=40 Identities=10% Similarity=0.174 Sum_probs=21.7
Q ss_pred HHHHHHHHhHHHHHHhhccccccccccchhhHHHHHHHHHHHHH
Q 002678 50 KEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIER 93 (893)
Q Consensus 50 KEIKKLQR~RDQIKtW~~s~eIKDK~~~~~~~~~L~e~RKlIE~ 93 (893)
.|-++++..-++++.|+..+++ |+. .|.++|.+.++.+..
T Consensus 555 ~er~~i~~~l~~~~~wL~~~~~-~~~---~~~~~~~el~~~~~~ 594 (653)
T PRK13411 555 ELKQRAEQKVEQLEAALTDPNI-SLE---ELKQQLEEFQQALLA 594 (653)
T ss_pred HHHHHHHHHHHHHHHHHhcCCC-CHH---HHHHHHHHHHHHHHH
Confidence 3445666677778888877543 333 233444444444333
No 361
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=33.58 E-value=6.6e+02 Score=27.37 Aligned_cols=31 Identities=29% Similarity=0.502 Sum_probs=26.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002678 126 KAKSETRDWLNNLVSELESQIDSFEAELEGL 156 (893)
Q Consensus 126 kek~E~~~wL~~~IdeL~~QiE~~EaEiE~L 156 (893)
+-|.++..|.+.-|++|+.++.....++..+
T Consensus 184 ~~~~e~e~~y~~k~~~l~~~~~~~~~~~~~~ 214 (312)
T PF00038_consen 184 KNREELEEWYQSKLEELRQQSEKSSEELESA 214 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhcccccccccccccccccccchh
Confidence 5667889999999999999998888887776
No 362
>TIGR03687 pupylate_cterm ubiquitin-like protein Pup. Members of this protein family are Pup, a small protein whose ligation to target proteins steers them toward degradation. This protein family occurs in a number of bacteria, especially Actinobacteria such as Mycobacterium tuberculosis, that possess an archeal-type proteasome. All members of this protein family known during model construction end with the C-terminal motif [FY][VI]QKGG[QE]. Ligation is thought to occur between the C-terminal COOH of Pup and an epsilon-amino group of a Lys on the target protein. The N-terminal half of this protein is poorly conserved and not represented in the seed alignment.
Probab=33.50 E-value=15 Score=29.09 Aligned_cols=22 Identities=32% Similarity=0.581 Sum_probs=19.3
Q ss_pred hhhhhhhhHHHHHHHhCCCCcc
Q 002678 200 EQVNDVKDLLEDYVERNQDDFE 221 (893)
Q Consensus 200 e~V~~IKddieyYve~nqddf~ 221 (893)
+.+++|-|+|+..+|.|.++|+
T Consensus 3 ~~~D~lLDeId~vLe~NAe~FV 24 (33)
T TIGR03687 3 EGVDDLLDEIDGVLESNAEEFV 24 (33)
T ss_pred chHHHHHHHHHHHHHHhHHHHH
Confidence 5789999999999999988764
No 363
>PRK12751 cpxP periplasmic stress adaptor protein CpxP; Reviewed
Probab=33.50 E-value=1.1e+02 Score=31.54 Aligned_cols=58 Identities=22% Similarity=0.248 Sum_probs=38.5
Q ss_pred HHHHhhhHHHhHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhHHHHHHhhcccccc
Q 002678 11 IDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIK 72 (893)
Q Consensus 11 IDr~lKKV~EGve~Fd~i~eK~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~eIK 72 (893)
+++.-++..|=.-.=-.+|.++++.=.+.||.+|..-+.+.+.+||+ |-.|+.++.+|
T Consensus 105 ~~kma~~~~e~~v~~~~~~~qmy~lLTPEQra~l~~~~e~r~~~~~~----~~~~~~~~~~~ 162 (162)
T PRK12751 105 AEKMSQNQIERHVEMAKVRNQMYNLLTPEQKEALNKKHQERIEKLQQ----KPAAQPSSAQK 162 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHh----ccccccCccCC
Confidence 33433333333333345666666777999999999999998877753 66888776543
No 364
>cd04770 HTH_HMRTR Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators. Helix-turn-helix (HTH) heavy metal resistance transcription regulators (HMRTR): MerR1 (mercury), CueR (copper), CadR (cadmium), PbrR (lead), ZntR (zinc), and other related proteins. These transcription regulators mediate responses to heavy metal stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=33.49 E-value=82 Score=29.99 Aligned_cols=23 Identities=22% Similarity=0.388 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHhhc
Q 002678 45 EADLKKEIKKLQRYRDQIKTWIQ 67 (893)
Q Consensus 45 E~DLKKEIKKLQR~RDQIKtW~~ 67 (893)
..+|+++|+.|++.++.|+.++.
T Consensus 88 ~~~l~~~i~~l~~~~~~l~~~~~ 110 (123)
T cd04770 88 LAEVEAKIAELQALRAELAGLLS 110 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678899999999988887764
No 365
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=33.23 E-value=3.2e+02 Score=25.65 Aligned_cols=57 Identities=16% Similarity=0.416 Sum_probs=36.4
Q ss_pred hHHHHhhhHHHhHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhHHHHHHhhcccccc
Q 002678 10 EIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIK 72 (893)
Q Consensus 10 EIDr~lKKV~EGve~Fd~i~eK~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~eIK 72 (893)
+++..++++.--|+.++.-.+......... ++|..||.+|+--|..+-.=+...+..
T Consensus 5 ~le~al~rL~~aid~LE~~v~~r~~~~~~~------~~~e~ei~~l~~dr~rLa~eLD~~~ar 61 (89)
T PF13747_consen 5 SLEAALTRLEAAIDRLEKAVDRRLERDRKR------DELEEEIQRLDADRSRLAQELDQAEAR 61 (89)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhh------hhHHHHHHHHHhhHHHHHHHHHhHHHH
Confidence 566677777777766665544443322221 788889999988888776666554443
No 366
>PF03993 DUF349: Domain of Unknown Function (DUF349); InterPro: IPR007139 This motif is found singly or as up to five tandem repeats in a small set of bacterial proteins. There are two or three alpha-helices, and possibly a beta-strand.
Probab=33.13 E-value=2.7e+02 Score=24.03 Aligned_cols=33 Identities=15% Similarity=0.268 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhhccccccc
Q 002678 41 KEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKD 73 (893)
Q Consensus 41 KEKlE~DLKKEIKKLQR~RDQIKtW~~s~eIKD 73 (893)
.+.++.+...-+.+=+.+=++++.+..+.|+++
T Consensus 22 ~~~~~~~~~~n~~~K~~Li~~~~~l~~~~d~~~ 54 (77)
T PF03993_consen 22 FEEQDAEREENLEKKEALIEEAEALAESEDWKE 54 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccHHH
Confidence 345555555566667788889999999888665
No 367
>PRK10869 recombination and repair protein; Provisional
Probab=33.13 E-value=7.5e+02 Score=30.01 Aligned_cols=44 Identities=20% Similarity=0.309 Sum_probs=19.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHh-hhCCCCChhhhhhhhhHHH
Q 002678 167 RLTHLETSITRHKAHIMKLELILRL-LDNDELSPEQVNDVKDLLE 210 (893)
Q Consensus 167 r~~~le~~ierhk~Hi~kLE~lLRl-LdN~~l~pe~V~~IKddie 210 (893)
++.++...++.-...+..+-.-||. +++=..||+++++|.+.|.
T Consensus 262 ~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~dp~~l~~ie~Rl~ 306 (553)
T PRK10869 262 KLSGVLDMLEEALIQIQEASDELRHYLDRLDLDPNRLAELEQRLS 306 (553)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHH
Confidence 3334444444444444443333322 2222456666655554443
No 368
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=33.11 E-value=9.3e+02 Score=29.21 Aligned_cols=32 Identities=31% Similarity=0.471 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcccCC
Q 002678 131 TRDWLNNLVSELESQIDSFEAELEGLTVKKGK 162 (893)
Q Consensus 131 ~~~wL~~~IdeL~~QiE~~EaEiE~Ls~KK~K 162 (893)
...=|..++.=|+.||+.|+..++.+.....|
T Consensus 134 ~~~~l~~ll~Pl~e~l~~f~~~v~~~~~~~~~ 165 (475)
T PRK10361 134 NRQSLNSLLSPLREQLDGFRRQVQDSFGKEAQ 165 (475)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34456778888899999999998887544333
No 369
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=33.06 E-value=1e+03 Score=29.44 Aligned_cols=56 Identities=11% Similarity=0.275 Sum_probs=42.5
Q ss_pred hhHHHHhhhHHHhHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhHHHHHHhhcc
Q 002678 9 GEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQS 68 (893)
Q Consensus 9 ~EIDr~lKKV~EGve~Fd~i~eK~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s 68 (893)
.+||+=|+++.+++..|+.+ .+..|.=|--+.=...++.++-|+-+=|+|=..+..
T Consensus 167 ~~lEk~Le~i~~~l~qf~~l----t~~Gd~ieA~evl~~~ee~~~~L~~~~e~IP~L~~e 222 (570)
T COG4477 167 PELEKKLENIEEELSQFVEL----TSSGDYIEAREVLEEAEEHMIALRSIMERIPSLLAE 222 (570)
T ss_pred HHHHHHHHHHHHHHHHHHHh----ccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48899999999999999874 444555554444456888999999998888776654
No 370
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=32.99 E-value=1e+02 Score=35.47 Aligned_cols=62 Identities=21% Similarity=0.330 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhCC
Q 002678 129 SETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDND 195 (893)
Q Consensus 129 ~E~~~wL~~~IdeL~~QiE~~EaEiE~Ls~KK~K~~~~r~~~le~~ierhk~Hi~kLE~lLRlLdN~ 195 (893)
.+..+-|..-|++|+.+|+.++..++... +...++.+++..++++.-.|..++.++.-=.++
T Consensus 241 ~~~~~~l~~~~~~~~~~i~~l~~~l~~~~-----k~~~k~~~~~~q~~~~~k~~~~~~~~~~~~~~~ 302 (406)
T PF02388_consen 241 KEYLESLQEKLEKLEKEIEKLEEKLEKNP-----KKKNKLKELEEQLASLEKRIEEAEELIAEYGDE 302 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-T-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCc-----chhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 44455566666677777777777666553 223456778888888888888888776644333
No 371
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=32.96 E-value=61 Score=30.36 Aligned_cols=32 Identities=34% Similarity=0.540 Sum_probs=28.1
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002678 125 EKAKSETRDWLNNLVSELESQIDSFEAELEGL 156 (893)
Q Consensus 125 ekek~E~~~wL~~~IdeL~~QiE~~EaEiE~L 156 (893)
|+...+|.+||+.-|+.|+.+++.++.++..+
T Consensus 72 E~s~~eA~~~l~~r~~~l~~~~~~l~~~~~~~ 103 (120)
T PF02996_consen 72 EMSLEEAIEFLKKRIKELEEQLEKLEKELAEL 103 (120)
T ss_dssp EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57788999999999999999999998887665
No 372
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=32.85 E-value=7.3e+02 Score=28.08 Aligned_cols=23 Identities=17% Similarity=0.435 Sum_probs=0.0
Q ss_pred HHHHhhhHHHhHHHHHHHHHHhh
Q 002678 11 IDRVLKKVQEGVDVFDSIWNKVY 33 (893)
Q Consensus 11 IDr~lKKV~EGve~Fd~i~eK~~ 33 (893)
+|+-+..+..-.+.|....+++.
T Consensus 14 l~~~~~~~~~E~~~Y~~fL~~l~ 36 (314)
T PF04111_consen 14 LDKQLEQAEKERDTYQEFLKKLE 36 (314)
T ss_dssp -----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444
No 373
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=32.74 E-value=1.1e+02 Score=34.23 Aligned_cols=93 Identities=17% Similarity=0.325 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHhhcccccc-ccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCC
Q 002678 42 EKFEADLKKEIKKLQRYRDQIKTWIQSSEIK-DKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPK 120 (893)
Q Consensus 42 EKlE~DLKKEIKKLQR~RDQIKtW~~s~eIK-DK~~~~~~~~~L~e~RKlIE~~MErFK~vEKesKtKafSkEGL~~~~k 120 (893)
+||-++|+.-=+||....+-|-.|-=..|-| +|. .+.-+|-|+++-=|- .+.-|+--|.
T Consensus 180 ~rlK~ele~tk~Klee~QnelsAwkFTPdS~tGK~-------LMAKCR~L~qENeEl---------G~q~s~Gria---- 239 (330)
T KOG2991|consen 180 LRLKGELEQTKDKLEEAQNELSAWKFTPDSKTGKM-------LMAKCRTLQQENEEL---------GHQASEGRIA---- 239 (330)
T ss_pred HHHHHHHHHHHHHHHHHHhhhheeeecCCCcchHH-------HHHHHHHHHHHHHHH---------HhhhhcccHH----
Confidence 5677777777789999999999999999999 565 566788888874442 1222211111
Q ss_pred CCchHHh---HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002678 121 TDPKEKA---KSETRDWLNNLVSELESQIDSFEAELEGL 156 (893)
Q Consensus 121 ~DP~eke---k~E~~~wL~~~IdeL~~QiE~~EaEiE~L 156 (893)
-.+-+ ...-.+=|+..-++|..-++.|..++|..
T Consensus 240 --~Le~eLAmQKs~seElkssq~eL~dfm~eLdedVEgm 276 (330)
T KOG2991|consen 240 --ELEIELAMQKSQSEELKSSQEELYDFMEELDEDVEGM 276 (330)
T ss_pred --HHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHhcc
Confidence 01100 00112235566677777777777777765
No 374
>PTZ00432 falcilysin; Provisional
Probab=32.70 E-value=2.7e+02 Score=36.49 Aligned_cols=49 Identities=14% Similarity=0.076 Sum_probs=31.8
Q ss_pred hHHHHHHHHHHHHH------HHHHhHHHHHHhhccccccccccchhhHHHHHHHHHHHH
Q 002678 40 QKEKFEADLKKEIK------KLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIE 92 (893)
Q Consensus 40 QKEKlE~DLKKEIK------KLQR~RDQIKtW~~s~eIKDK~~~~~~~~~L~e~RKlIE 92 (893)
.|.++|-.+| |+. =|+=...-+..|+.+.|..+- -.++..|.+.|+.|+
T Consensus 492 a~~qlef~~r-E~~~~~~p~gl~~~~~~~~~~~~g~dp~~~---l~~~~~l~~lr~~~~ 546 (1119)
T PTZ00432 492 SLNNIEFVMK-ELNLGTYPKGLMLIFLMQSRLQYGKDPFEI---LRFEKLLNELKLRID 546 (1119)
T ss_pred HHHHHHHHhh-hccCCCCCcHHHHHHHHHHHHhcCCCHHHH---HhhHHHHHHHHHHHh
Confidence 4777888887 542 488888899999987554431 124445666666664
No 375
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=32.63 E-value=1.6e+02 Score=25.83 Aligned_cols=48 Identities=15% Similarity=0.345 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHhhhhcccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhC
Q 002678 139 VSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDN 194 (893)
Q Consensus 139 IdeL~~QiE~~EaEiE~Ls~KK~K~~~~r~~~le~~ierhk~Hi~kLE~lLRlLdN 194 (893)
|++|+..+..++..++.+ ....++|...+++.+.-|.+|=.|..++.|
T Consensus 2 i~elEn~~~~~~~~i~tv--------k~en~~i~~~ve~i~envk~ll~lYE~Vs~ 49 (55)
T PF05377_consen 2 IDELENELPRIESSINTV--------KKENEEISESVEKIEENVKDLLSLYEVVSN 49 (55)
T ss_pred HHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 456666666666666554 122455666666666666666666666655
No 376
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.56 E-value=5.2e+02 Score=33.09 Aligned_cols=158 Identities=16% Similarity=0.158 Sum_probs=81.0
Q ss_pred HhhhHHHhHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHh-------HHHHHHhhccccccccccchhhHHHHHH
Q 002678 14 VLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRY-------RDQIKTWIQSSEIKDKKVSASYEQALVD 86 (893)
Q Consensus 14 ~lKKV~EGve~Fd~i~eK~~~a~n~nQKEKlE~DLKKEIKKLQR~-------RDQIKtW~~s~eIKDK~~~~~~~~~L~e 86 (893)
+|..+.-.|+.|+++-.-++. --|.|+.||-|--| -.|...-. .+.-
T Consensus 230 ~~S~~~t~v~~F~DLe~A~e~----------V~~~K~Qi~~L~PLV~~~~r~e~~~~S~~----------------~~~A 283 (1104)
T COG4913 230 TFSIAKTAVEQFQDLEGAYEQ----------VEDIKRQIHTLDPLVQLKNRREKAQQSKD----------------HANA 283 (1104)
T ss_pred chhHHHHHHHHHHhHHHHHHH----------HHHHHHHHhhhhHHHHHHHHHHHHHHhHH----------------HHHH
Confidence 456667777778775333211 13678888776333 22222222 3333
Q ss_pred HHHHHHHHHHHHHHHHhhhccccccccccCCCCCCCchHHhHH---HHHHHHHHHH-HHHHHHHHHHHHHHhhhhcccC-
Q 002678 87 ARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKS---ETRDWLNNLV-SELESQIDSFEAELEGLTVKKG- 161 (893)
Q Consensus 87 ~RKlIE~~MErFK~vEKesKtKafSkEGL~~~~k~DP~ekek~---E~~~wL~~~I-deL~~QiE~~EaEiE~Ls~KK~- 161 (893)
.||.+-.---|.|--|.++...+|.-|.-.+..|+.-.+.++. |...-+.+.+ +---.|.+.+-+++|.+-.||.
T Consensus 284 ~k~aL~~~~~~iK~E~~~~~v~~~t~E~tQ~~~~ve~~~~e~~~A~~~~T~~~~~vk~~~G~~~~~LsA~~E~~~~~r~~ 363 (1104)
T COG4913 284 LKKALPTVGNRIKKEEQETLVRQFTVEQTQAKSKVESAKIETDRAREMETLAHDNVKQIVGAQHGILSAKREGAVDKRRT 363 (1104)
T ss_pred HHhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHH
Confidence 4444444444555555555555555444333222222222221 1122222222 2223566777777777744332
Q ss_pred ----------------CCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhCCCC
Q 002678 162 ----------------KTRPPRLTHLETSITRHKAHIMKLELILRLLDNDEL 197 (893)
Q Consensus 162 ----------------K~~~~r~~~le~~ierhk~Hi~kLE~lLRlLdN~~l 197 (893)
-..++-.+++-+...+-+.|+..+--....|+|+.-
T Consensus 364 ~~~~~~~~~aLv~~l~~aAP~~A~~~L~~~~~~~~~~dE~~AA~E~L~~~~~ 415 (1104)
T COG4913 364 ISTARAGLDALVKGLGGAAPESAEELLELNNAARLTVDEYPAAREALESAGQ 415 (1104)
T ss_pred HHHhhhHHHHHHHhccCCCcccHHHHHHHHHHHHHhHhhhHHHHHHHHhccc
Confidence 111334445555667888999999999999988764
No 377
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=32.55 E-value=6.5e+02 Score=26.97 Aligned_cols=150 Identities=21% Similarity=0.265 Sum_probs=0.0
Q ss_pred hhhhHHHHhhhHHHhHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhHHHHHHhhccccccccccchhhHHHHHH
Q 002678 7 LQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVD 86 (893)
Q Consensus 7 LQ~EIDr~lKKV~EGve~Fd~i~eK~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~eIKDK~~~~~~~~~L~e 86 (893)
|+.|||..-.++.+.-...+..-.++ +++|+++.-=-+|+|-+=+.+..=-..-+....+ |.+
T Consensus 6 l~~eld~~~~~~~~~~~~l~~~~~~~---------~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~k--------L~~ 68 (237)
T PF00261_consen 6 LKDELDEAEERLEEAEEKLKEAEKRA---------EKAEAEVASLQRRIQLLEEELERAEERLEEATEK--------LEE 68 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHH--------HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH--------HHH
Q ss_pred HHHHHHHHHHHHHHHHhhhccccccccccCCCCCCCchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCch
Q 002678 87 ARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPP 166 (893)
Q Consensus 87 ~RKlIE~~MErFK~vEKesKtKafSkEGL~~~~k~DP~ekek~E~~~wL~~~IdeL~~QiE~~EaEiE~Ls~KK~K~~~~ 166 (893)
..+..+.-=..+|.+|- +...-.+-++-|...+.+.....+..+..++.. .+|...-..
T Consensus 69 ~e~~~de~er~~k~lE~--------------------r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~-~rkl~~~E~ 127 (237)
T PF00261_consen 69 AEKRADESERARKVLEN--------------------REQSDEERIEELEQQLKEAKRRAEEAERKYEEV-ERKLKVLEQ 127 (237)
T ss_dssp HHHHHHHHCHHHHHHHH--------------------HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHC-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhC
Q 002678 167 RLTHLETSITRHKAHIMKLELILRLLDN 194 (893)
Q Consensus 167 r~~~le~~ierhk~Hi~kLE~lLRlLdN 194 (893)
+++.++..++...-+|..||.-|+.+.|
T Consensus 128 ~Le~aEeR~e~~E~ki~eLE~el~~~~~ 155 (237)
T PF00261_consen 128 ELERAEERAEAAESKIKELEEELKSVGN 155 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhchhHHHHHHHHHHHHH
No 378
>PRK04406 hypothetical protein; Provisional
Probab=32.54 E-value=1.5e+02 Score=27.04 Aligned_cols=47 Identities=17% Similarity=0.362 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhcccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002678 138 LVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLL 192 (893)
Q Consensus 138 ~IdeL~~QiE~~EaEiE~Ls~KK~K~~~~r~~~le~~ierhk~Hi~kLE~lLRlL 192 (893)
+|+.|+..|+.||..+-=+ ...|++|...+-+..-.|.+|+.-||+|
T Consensus 5 ~~~~le~Ri~~LE~~lAfQ--------E~tIe~LN~~v~~Qq~~I~~L~~ql~~L 51 (75)
T PRK04406 5 TIEQLEERINDLECQLAFQ--------EQTIEELNDALSQQQLLITKMQDQMKYV 51 (75)
T ss_pred hHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666554221 2345566666677777777777777766
No 379
>PF08376 NIT: Nitrate and nitrite sensing; InterPro: IPR013587 The nitrate and nitrite-sensing (NIT) domain is a (~250 aa) sensor domain found in various receptor components of signal transduction pathways from different bacterial lineages []. The NIT domain is predicted to be all alpha-helical in structure []. Proteins containing a NIT domain belong to one of four known classes of prokaryotic signal transduction proteins: intracellular transcription anti-termination regulators, sensor histidine kinases, methyl-accepting chemotaxis proteins, diguanylate cyclases/phosphodiesterases. NIT-containing receptors regulate cellular functions such as gene expression (transcription anti-terminators and histidine kinases), cell motility (chemotaxis receptors), and enzyme activity (diguanylate cyclases/phosphodiesterases), in response to changes in nitrate and/or nitrite concentrations. The NIT domain is found as both an extracellular and an intracellular sensor. The NIT domain can be found in combination with other signalling domains, such as ANTAR, HAMP (IPR003660 from INTERPRO), MCP, Hemerythrins (IPR002063 from INTERPRO), CHASE (IPR006189 from INTERPRO), GGDEF (IPR000160 from INTERPRO), PAS (IPR000014 from INTERPRO), EAL (IPR001633 from INTERPRO), HK (IPR005467 from INTERPRO), GAF, REC and Hpt (IPR008207 from INTERPRO).; PDB: 4AKK_A.
Probab=32.48 E-value=2.2e+02 Score=29.10 Aligned_cols=81 Identities=12% Similarity=0.092 Sum_probs=50.7
Q ss_pred hHHHhHHHHHHHHHHhhcCCCchhHHHHHHHHH-HHHHHHHHhHHHHHHhhccccccccccchhhHHHHHHHHHHHHHHH
Q 002678 17 KVQEGVDVFDSIWNKVYDTDNANQKEKFEADLK-KEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREM 95 (893)
Q Consensus 17 KV~EGve~Fd~i~eK~~~a~n~nQKEKlE~DLK-KEIKKLQR~RDQIKtW~~s~eIKDK~~~~~~~~~L~e~RKlIE~~M 95 (893)
++.+=+..++..++.+...-...++..|+.-+. ..+++++++|++|-.=-.. .. .+.-.-.++.+..-..+
T Consensus 158 ~~~~~~~~~~~~l~~f~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~------~~~~~~~~W~~~~t~~i 229 (247)
T PF08376_consen 158 QFASLIARQRAALESFQAAASPEQRALYDALLSSPAVQRVQRLRDQILSNGPG--GG------LSPIDAEEWFAAATARI 229 (247)
T ss_dssp HHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHS-----HHHHHHHHHHHCS------S-------TTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhHHHHHHHHHHHHHhhcccC--CC------CCCCCHHHHHHHHHHHH
Confidence 333444444455555555556677888888777 7899999999998762221 11 11225688999999999
Q ss_pred HHHHHHHhhh
Q 002678 96 ERFKICEKET 105 (893)
Q Consensus 96 ErFK~vEKes 105 (893)
+.++.||...
T Consensus 230 d~l~~ve~~l 239 (247)
T PF08376_consen 230 DALRQVEDRL 239 (247)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999864
No 380
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=32.45 E-value=1.4e+02 Score=27.40 Aligned_cols=57 Identities=18% Similarity=0.294 Sum_probs=34.6
Q ss_pred hhhhHHHHhhhHHHhHHHHHHHHHHhhc------CCCchhHHHHHHHHHHHHHHHHHhHHHHH
Q 002678 7 LQGEIDRVLKKVQEGVDVFDSIWNKVYD------TDNANQKEKFEADLKKEIKKLQRYRDQIK 63 (893)
Q Consensus 7 LQ~EIDr~lKKV~EGve~Fd~i~eK~~~------a~n~nQKEKlE~DLKKEIKKLQR~RDQIK 63 (893)
+..+|.+..+.|.+.|..-+..-++... ..-.+|.++|-.+|+..|...|+.+..++
T Consensus 51 ~~~~~~~~~~~i~~~lk~l~~~~~~~~~~~~~~~r~~~~q~~~L~~~f~~~m~~fq~~Q~~~~ 113 (117)
T smart00503 51 LIDDIKRLAKEIRAKLKELEKENLENRASGSASDRTRKAQTEKLRKKFKEVMNEFQRLQRKYR 113 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhhcccCCHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555444333211 12246788888888888888888777665
No 381
>PRK10947 global DNA-binding transcriptional dual regulator H-NS; Provisional
Probab=32.41 E-value=1.5e+02 Score=29.88 Aligned_cols=31 Identities=16% Similarity=0.284 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhCCCCChhhh
Q 002678 172 ETSITRHKAHIMKLELILRLLDNDELSPEQV 202 (893)
Q Consensus 172 e~~ierhk~Hi~kLE~lLRlLdN~~l~pe~V 202 (893)
+........+..+|+.+..+|....|+++++
T Consensus 45 ~~~~~~~~er~~kl~~~r~~m~~~Gis~~eL 75 (135)
T PRK10947 45 SAAAAEVEERTRKLQQYREMLIADGIDPNEL 75 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence 3344445567789999999999999999877
No 382
>PF04286 DUF445: Protein of unknown function (DUF445); InterPro: IPR007383 This entry contains proteins of unknown function. They are predicted to be transmembrane proteins with 2 or 3 TM domains.
Probab=32.34 E-value=3.9e+02 Score=29.14 Aligned_cols=23 Identities=26% Similarity=0.436 Sum_probs=15.8
Q ss_pred CchHHhHHHHHHHHHHHHHHHHH
Q 002678 122 DPKEKAKSETRDWLNNLVSELES 144 (893)
Q Consensus 122 DP~ekek~E~~~wL~~~IdeL~~ 144 (893)
++...-+.+...|+...|+.|..
T Consensus 202 ~~~~~lr~~~~~~l~~~i~~L~~ 224 (367)
T PF04286_consen 202 DPDHPLRQEIDQKLRELIERLLT 224 (367)
T ss_pred CcccHhHHHHHHHHHHHHHHHhc
Confidence 45556667777777777777764
No 383
>PF02609 Exonuc_VII_S: Exonuclease VII small subunit; InterPro: IPR003761 Exonuclease VII is composed of two non-identical subunits; one large subunit and 4 small ones []. This enzyme catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield nucleoside 5'-phosphates.; GO: 0008855 exodeoxyribonuclease VII activity, 0006308 DNA catabolic process, 0009318 exodeoxyribonuclease VII complex; PDB: 1VP7_F.
Probab=32.34 E-value=73 Score=26.78 Aligned_cols=36 Identities=22% Similarity=0.190 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHhhhCCCCChhhhh-hhhhHHHHHHHh
Q 002678 180 AHIMKLELILRLLDNDELSPEQVN-DVKDLLEDYVER 215 (893)
Q Consensus 180 ~Hi~kLE~lLRlLdN~~l~pe~V~-~IKddieyYve~ 215 (893)
-.+.+||.|++.|+|+.++-|+.- ..++-+..+-.+
T Consensus 3 e~~~~Le~Iv~~Le~~~~sLdes~~lyeeg~~l~~~c 39 (53)
T PF02609_consen 3 EAMERLEEIVEKLESGELSLDESLKLYEEGMELIKKC 39 (53)
T ss_dssp HHHHHHHHHHHHHHTT-S-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 468899999999999999966554 466666655444
No 384
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.29 E-value=1.2e+03 Score=30.39 Aligned_cols=78 Identities=23% Similarity=0.274 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh-------cccCCC--C--chhHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChh
Q 002678 132 RDWLNNLVSELESQIDSFEAELEGLT-------VKKGKT--R--PPRLTHLETSITRHKAHIMKLELILRLLDNDELSPE 200 (893)
Q Consensus 132 ~~wL~~~IdeL~~QiE~~EaEiE~Ls-------~KK~K~--~--~~r~~~le~~ierhk~Hi~kLE~lLRlLdN~~l~pe 200 (893)
..++++.|-+|...+-.+++..++-+ +|+-+- + .-..+.-+..+.+-.+| .|++.+-+.|++=.-..+
T Consensus 864 ~k~~~nli~~ltEk~~sl~~qadse~l~ka~~~~k~~nl~lki~s~kqeqee~~v~~~~~~-~~i~alk~~l~dL~q~~e 942 (970)
T KOG0946|consen 864 IKFGNNLIKELTEKISSLEAQADSETLSKALKTVKSENLSLKIVSNKQEQEELLVLLADQK-EKIQALKEALEDLNQPVE 942 (970)
T ss_pred hhhhhhHHHHHhhhhhhHHHhhcchHHHHHHHHhhcccchhcccchhhhHHHHHHHHhhHH-HHHHHHHHHHHHhCCChh
Confidence 56888999999999888887765532 122110 0 11122223334444444 345555555554444556
Q ss_pred hhhhhhhHHH
Q 002678 201 QVNDVKDLLE 210 (893)
Q Consensus 201 ~V~~IKddie 210 (893)
++++.++++.
T Consensus 943 eie~e~~s~~ 952 (970)
T KOG0946|consen 943 EIEDEKVSII 952 (970)
T ss_pred hHHhhhhccc
Confidence 6666665543
No 385
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=32.12 E-value=6.3e+02 Score=26.66 Aligned_cols=77 Identities=25% Similarity=0.374 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHhhhhcccCCCCchhHHHHHHHHHHHHH----HHHHHHHHHHhhhCCC--CChhhhhhhhhHHHHH
Q 002678 139 VSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKA----HIMKLELILRLLDNDE--LSPEQVNDVKDLLEDY 212 (893)
Q Consensus 139 IdeL~~QiE~~EaEiE~Ls~KK~K~~~~r~~~le~~ierhk~----Hi~kLE~lLRlLdN~~--l~pe~V~~IKddieyY 212 (893)
...++..++...+.+++|.. .+|.+.+|+..++.-|+...- =..+.|.|-..+..+- .+-+.+.++|+-|+.|
T Consensus 117 ~~~~~~~L~k~~~~~~Kl~~-~~~s~~~K~~~~~~ei~~~e~~~~~a~~~~e~is~~~k~El~rF~~~r~~dfk~~l~~~ 195 (216)
T cd07627 117 WQSAESELSKKKAQLEKLKR-QGKTQQEKLNSLLSELEEAERRASELKKEFEEVSELIKSELERFERERVEDFRNSVEIY 195 (216)
T ss_pred HHHHHHHHHHHHHHHHHHhc-cCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555666666532 123345666666666543222 2335566655555544 4578899999999999
Q ss_pred HHhC
Q 002678 213 VERN 216 (893)
Q Consensus 213 ve~n 216 (893)
+++-
T Consensus 196 ~e~~ 199 (216)
T cd07627 196 LESA 199 (216)
T ss_pred HHHH
Confidence 9854
No 386
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=32.11 E-value=2.6e+02 Score=28.08 Aligned_cols=50 Identities=14% Similarity=0.228 Sum_probs=26.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCchhHHHHHHHH
Q 002678 126 KAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSI 175 (893)
Q Consensus 126 kek~E~~~wL~~~IdeL~~QiE~~EaEiE~Ls~KK~K~~~~r~~~le~~i 175 (893)
+-|.++.+-|...|..|+.+++.||.+.-++-..-.|.....+..++..+
T Consensus 16 ~~K~~l~~~l~~~i~~~d~el~QLefq~kr~~~e~~~~~~~~~~~i~~q~ 65 (131)
T PF11068_consen 16 KWKEELLQELQEQIQQLDQELQQLEFQGKRMIKEIKKQNAQQIQSIQQQF 65 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHH
Confidence 44555566666666666666666666655543222333334444444443
No 387
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=32.04 E-value=5.9e+02 Score=33.53 Aligned_cols=149 Identities=23% Similarity=0.290 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHH----hhhccccccccccC
Q 002678 41 KEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICE----KETKTKAFSKEGLG 116 (893)
Q Consensus 41 KEKlE~DLKKEIKKLQR~RDQIKtW~~s~eIKDK~~~~~~~~~L~e~RKlIE~~MErFK~vE----KesKtKafSkEGL~ 116 (893)
..+++.+|++=.++|-.+|--|.. |-.|- .+|+..-+.+|.+...|+.== +|++|+ .+|=..
T Consensus 673 ~~~~~~~~~~l~~~L~~~r~~i~~------~~~~i------~q~~~~~qk~e~~~~~~~~~~~~l~~e~~~~--k~e~~~ 738 (1200)
T KOG0964|consen 673 VNESRSELKELQESLDEVRNEIED------IDQKI------DQLNNNMQKVENDRNAFKREHEKLKRELNTI--KGEKSR 738 (1200)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH------HHHHH------HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh--hhHHHH
Confidence 445555555555555555544432 21111 267777777777777776421 222221 111111
Q ss_pred CCCCCCchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhCCC
Q 002678 117 QQPKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDE 196 (893)
Q Consensus 117 ~~~k~DP~ekek~E~~~wL~~~IdeL~~QiE~~EaEiE~Ls~KK~K~~~~r~~~le~~ierhk~Hi~kLE~lLRlLdN~~ 196 (893)
.+..+.|+.+ ...=|+.-+..++.|.+.||+|+-.--. .+-..+ ....+...+-.|.+|-.=+|.|-++.
T Consensus 739 v~~s~~~k~~----~Le~i~~~l~~~~~~~~~~e~el~sel~-----sqLt~e-e~e~l~kLn~eI~~l~~kl~~~~~er 808 (1200)
T KOG0964|consen 739 VQESLEPKGK----ELEEIKTSLHKLESQSNYFESELGSELF-----SQLTPE-ELERLSKLNKEINKLSVKLRALREER 808 (1200)
T ss_pred HHHHhhHHHH----HHHHHHHHHHHHHHHHHhHHHHHhHHHH-----hhcCHH-HHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 1111122222 2223445566666667777776532100 000111 22345556667777777788888777
Q ss_pred CChhhhhhhhhHHHHHHHhC
Q 002678 197 LSPEQVNDVKDLLEDYVERN 216 (893)
Q Consensus 197 l~pe~V~~IKddieyYve~n 216 (893)
++ |+-+|..|++++..|
T Consensus 809 ~~---~~~rk~~le~~l~~k 825 (1200)
T KOG0964|consen 809 ID---IETRKTALEANLNTK 825 (1200)
T ss_pred HH---HHHHHHHHHHHHHHH
Confidence 76 777888999998766
No 388
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=32.02 E-value=6.8e+02 Score=27.57 Aligned_cols=45 Identities=18% Similarity=0.330 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHhhhhcccCCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 002678 141 ELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELI 188 (893)
Q Consensus 141 eL~~QiE~~EaEiE~Ls~KK~K~~~~r~~~le~~ierhk~Hi~kLE~l 188 (893)
..+.+++..+.++..+. ......+++.++..+++.+..+.+++.-
T Consensus 156 ~a~~~~~~a~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~l~~a~~~ 200 (331)
T PRK03598 156 QAQATLKSAQDKLSQYR---EGNRPQDIAQAKASLAQAQAALAQAELN 200 (331)
T ss_pred HHHHHHHHHHHHHHHHH---ccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555444431 1223345556666666655555544433
No 389
>PRK10328 DNA binding protein, nucleoid-associated; Provisional
Probab=31.99 E-value=1.5e+02 Score=29.84 Aligned_cols=54 Identities=19% Similarity=0.279 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhh
Q 002678 131 TRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELSPEQV 202 (893)
Q Consensus 131 ~~~wL~~~IdeL~~QiE~~EaEiE~Ls~KK~K~~~~r~~~le~~ierhk~Hi~kLE~lLRlLdN~~l~pe~V 202 (893)
..++|.++++.|+.=|+.-+.| .+........+..+|+.|.++|....|+++++
T Consensus 22 ~~e~Lee~~ekl~~vv~er~~~------------------~~~~~~~~~er~~~l~~i~~~~~~~Git~eeL 75 (134)
T PRK10328 22 SIDVLEEMLEKFRVVTKERREE------------------EEQQQRELAERQEKINTWLELMKADGINPEEL 75 (134)
T ss_pred CHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH
Confidence 3445555555555555444443 33344555667789999999999999999877
No 390
>cd07634 BAR_GAP10-like The Bin/Amphiphysin/Rvs (BAR) domain of Rho GTPase activating protein 10-like. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This group is composed of uncharacterized proteins called Rho GTPase activating protein (GAP) 10-like. GAP10-like may be a GAP with activity towards RhoA and Cdc42. Similar to GRAF and GRAF2, it contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of the related proteins GRAF and OPHN1, directly interact with their Rho GAP domains and inhibit theiractivity. The autoinhibited proteins are capable of binding membranes and tubulating liposomes, showing that the membrane-tubulation and GAP-inhibitory functions of the BAR domain
Probab=31.92 E-value=6.9e+02 Score=27.08 Aligned_cols=66 Identities=15% Similarity=0.258 Sum_probs=37.1
Q ss_pred HHHHHHHHhhh-hcccCCCCchhHHHHHHHH--HHHHHHHHHHHHHHHhhhCCCCChhhhhhhhhHHHHHHHh
Q 002678 146 IDSFEAELEGL-TVKKGKTRPPRLTHLETSI--TRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVER 215 (893)
Q Consensus 146 iE~~EaEiE~L-s~KK~K~~~~r~~~le~~i--erhk~Hi~kLE~lLRlLdN~~l~pe~V~~IKddieyYve~ 215 (893)
.+.+++-+|+- +..|+| ++..+++++..+ +|..|+...|+.++.+= .|..-.--+|-+-|--|+..
T Consensus 120 se~y~~aleK~l~l~~~k-k~~~~~ea~~~l~~~R~~F~~~~ldYv~~i~---~vq~kKkfefle~ll~~~~A 188 (207)
T cd07634 120 SEKYYSILEKHLNLSAKK-KESHLQRADTQIDREHQNFYEASLEYVFKIQ---EVQEKKKFEFVEPLLAFLQG 188 (207)
T ss_pred HhHHHHHHHHHHhccccC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 34444445552 233333 345666666655 78999999999999742 12222233455555555543
No 391
>KOG1854 consensus Mitochondrial inner membrane protein (mitofilin) [Cell wall/membrane/envelope biogenesis]
Probab=31.45 E-value=1e+03 Score=29.90 Aligned_cols=62 Identities=26% Similarity=0.369 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCCCchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002678 83 ALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGL 156 (893)
Q Consensus 83 ~L~e~RKlIE~~MErFK~vEKesKtKafSkEGL~~~~k~DP~ekek~E~~~wL~~~IdeL~~QiE~~EaEiE~L 156 (893)
.+.+|-++||..=..| +.|-+++++ ||...++.+- =-.+=|+..|-....+|++|..+++.+
T Consensus 276 vv~ky~~~ve~ar~~F-~~EL~si~p-----~l~~~d~~~~------L~~~dln~liahah~rvdql~~~l~d~ 337 (657)
T KOG1854|consen 276 VVGKYSELVEKARHQF-EQELESILP-----GLSLADKEEN------LSEDDLNKLIAHAHTRVDQLQKELEDQ 337 (657)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHhcC-----CCchhhhhhh------ccHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6777778887765554 456666666 7766443221 112234555556666666666666553
No 392
>KOG3726 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.26 E-value=4.9e+02 Score=32.82 Aligned_cols=87 Identities=21% Similarity=0.161 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHhhhhcccCCCC---------chhHH-HHHHHHHHHHHHHHHHHHHHHhhhCCC
Q 002678 128 KSETRDWLNNLVSELESQI-DSFEAELEGLTVKKGKTR---------PPRLT-HLETSITRHKAHIMKLELILRLLDNDE 196 (893)
Q Consensus 128 k~E~~~wL~~~IdeL~~Qi-E~~EaEiE~Ls~KK~K~~---------~~r~~-~le~~ierhk~Hi~kLE~lLRlLdN~~ 196 (893)
+.++..|+-+.+++|..|+ -.+..|.|-.+.=++|.. .+|+. ++...+.|-+.-+...=.||+.+--
T Consensus 308 r~~ve~~~~qt~~~~~~q~~k~ld~e~e~n~n~e~~~~a~~~~~~~s~~rvs~dlk~~v~~q~~~~~~ilgil~~il~-- 385 (717)
T KOG3726|consen 308 RIEVEKNFGQTYNELIEQIKKALDIEFEYNSNDEGKPNAVDLTTANSRERVSKDLKEIVNRQIRIFNIILGILRYILM-- 385 (717)
T ss_pred ccccchhhccccchHHHHHHHhhccceeeeccccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 3557788889999998654 667777776655444332 25776 7777777766666666666664421
Q ss_pred CChhhh-hhhhhHHHHHHHhCCC
Q 002678 197 LSPEQV-NDVKDLLEDYVERNQD 218 (893)
Q Consensus 197 l~pe~V-~~IKddieyYve~nqd 218 (893)
+--| +-+.+.|-||..=|.|
T Consensus 386 --~~fll~~~~~Sl~ym~~Y~~d 406 (717)
T KOG3726|consen 386 --CLFLLWPFIYSLRYMYKYNND 406 (717)
T ss_pred --HHHHHHHHHHHHHHHHHhccc
Confidence 3333 3677888887765544
No 393
>PRK14011 prefoldin subunit alpha; Provisional
Probab=31.23 E-value=1.9e+02 Score=29.41 Aligned_cols=32 Identities=28% Similarity=0.272 Sum_probs=27.3
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002678 125 EKAKSETRDWLNNLVSELESQIDSFEAELEGL 156 (893)
Q Consensus 125 ekek~E~~~wL~~~IdeL~~QiE~~EaEiE~L 156 (893)
|+...||.+||..-|++|+...+.+..-++.+
T Consensus 83 Ek~~~eA~~~~~~ri~~l~~~~~~l~~~i~~~ 114 (144)
T PRK14011 83 EKDVSEVIEDFKKSVEELDKTKKEGNKKIEEL 114 (144)
T ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57889999999999999998888888877665
No 394
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=31.20 E-value=7.9e+02 Score=28.43 Aligned_cols=125 Identities=23% Similarity=0.384 Sum_probs=63.5
Q ss_pred ccccchhhhHHHHhhhHHHhHHHHHHH-----HHHhhcCCCchhHHHHHHHHHH---HHHHHHHhHHHHHHhhccccccc
Q 002678 2 GASRKLQGEIDRVLKKVQEGVDVFDSI-----WNKVYDTDNANQKEKFEADLKK---EIKKLQRYRDQIKTWIQSSEIKD 73 (893)
Q Consensus 2 aa~RKLQ~EIDr~lKKV~EGve~Fd~i-----~eK~~~a~n~nQKEKlE~DLKK---EIKKLQR~RDQIKtW~~s~eIKD 73 (893)
.+.+.|...|+.++.++..-+...... ..+++.. ..-|.|||..|++ ||..+++..+.++. .|.|
T Consensus 218 ~~S~~LR~~i~~~l~~~~~dl~~Q~~~vn~al~~Ri~et--~~ak~~Le~ql~~~~~ei~~~e~~i~~L~~-----ai~~ 290 (384)
T PF03148_consen 218 QSSAQLREDIDSILEQTANDLRAQADAVNAALRKRIHET--QEAKNELEWQLKKTLQEIAEMEKNIEDLEK-----AIRD 290 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-----HHHH
Confidence 356788889999999888776544321 1222221 2337777777765 44444444444432 3444
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCCCchHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002678 74 KKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDSFEAEL 153 (893)
Q Consensus 74 K~~~~~~~~~L~e~RKlIE~~MErFK~vEKesKtKafSkEGL~~~~k~DP~ekek~E~~~wL~~~IdeL~~QiE~~EaEi 153 (893)
|.. +| |+.++++|. ..| .-|... -.|+.+..-.+-..-|...|+.|+.++...++.+
T Consensus 291 k~~------~l----kvaqTRL~~----------R~~-RP~vEl--crD~~q~~L~~Ev~~l~~~i~~L~~~L~~a~~~l 347 (384)
T PF03148_consen 291 KEG------PL----KVAQTRLEN----------RTQ-RPNVEL--CRDPPQYGLIEEVKELRESIEALQEKLDEAEASL 347 (384)
T ss_pred HHh------hH----HHHHHHHhh----------Hhc-CCchHH--HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 431 22 333333332 222 111110 0133333332223667777777777777777766
Q ss_pred hhh
Q 002678 154 EGL 156 (893)
Q Consensus 154 E~L 156 (893)
..|
T Consensus 348 ~~L 350 (384)
T PF03148_consen 348 QKL 350 (384)
T ss_pred HHH
Confidence 555
No 395
>PF08397 IMD: IRSp53/MIM homology domain; InterPro: IPR013606 The IMD (IRSp53 and MIM (missing in metastases) homology) domain is a BAR-like domain of approximately 250 amino acids found at the N-terminal in the insulin receptor tyrosine kinase substrate p53 (IRSp53) and in the evolutionarily related IRSp53/MIM family. In IRSp53, a ubiquitous regulator o the actin cytoskeleton, the IMD domain acts as conserved F-actin bundling domain involved in filopodium formation. Filopodium-inducing IMD activity is regulated by Cdc42 and Rac1 (Rho-family GTPases) and is SH3-independent [, , ]. The IRSp53/MIM family is a novel F-actin bundling protein family that includes invertebrate relatives: Vertebrate MIM (missing in metastasis), an actin-binding scaffold protein that may be involved in cancer metastasis. Vertebrate ABBA-1, a MIM-related protein. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2 (BAI1-associated protein 2) or insulin receptor tyrosine kinase substrate p53 (IRSp53), a multifunctional adaptor protein that links Rac1 with a Wiskott-Aldrich syndrome family verprolin-homologous protein 2 (WAVE2) to induce lamellipodia or Cdc42 with Mena to induce filopodia []. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2-like proteins 1 and 2 (BAI1-associated protein 2-like proteins 1 and 2). Drosophila melanogaster (Fruit fly) CG32082-PA. Caenorhabditis elegans M04F3.5 protein. The vertebrate IRSp53/MIM family is divided into two major groups: the IRSp53 subfamily and the MIM/ABBA subfamily. The putative invertebrate homologues are positioned between them. The IRSp53 subfamily members contain an SH3 domain, and the MIM/ABBA subfamily proteins contain a WH2 (WASP-homology 2) domain. The vertebrate SH3-containing subfamily is further divided into three groups according to the presence or absence of the WWB and the half-CRIB motif. The IMD domain can bind to and bundle actin filaments, bind to membranes and interact with the small GTPase Rac [, ]. The IMD domain folds as a coiled coil of three extended alpha-helices and a shorter C-terminal helix. Helix 4 packs tightly against the other three helices, and thus represents an integral part of the domain. The fold of the IMD domain closely resembles that of the BAR (Bin-Amphiphysin-RVS) domain, a functional module serving both as a sensor and inducer of membrane curvature []. The WH2 domain performs a scaffolding function [].; GO: 0008093 cytoskeletal adaptor activity, 0017124 SH3 domain binding, 0007165 signal transduction, 0046847 filopodium assembly; PDB: 2D1L_A 3OK8_B 1WDZ_B 1Y2O_A 2YKT_A.
Probab=31.17 E-value=3.6e+02 Score=28.50 Aligned_cols=25 Identities=32% Similarity=0.484 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccccccccc
Q 002678 83 ALVDARKLIEREMERFKICEKETKTKAFSKEGL 115 (893)
Q Consensus 83 ~L~e~RKlIE~~MErFK~vEKesKtKafSkEGL 115 (893)
.+.+.-|.||.+|+.| .++|.++=|
T Consensus 62 ~~s~~~r~i~~~~~~~--------~~~~~~~li 86 (219)
T PF08397_consen 62 QISEVHRRIENELEEV--------FKAFHSELI 86 (219)
T ss_dssp HHHHHHHHHHHHHHHH--------HHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHH--------HHHHHHHHH
Confidence 4455677888888877 666665533
No 396
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=31.11 E-value=1.7e+02 Score=26.95 Aligned_cols=68 Identities=19% Similarity=0.320 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHhhhhcccCCCCchhHHHHH----HHHHHHHHHHHHHHHHHHhhhCCCCChhhhhhhhhHHHHHHHh
Q 002678 140 SELESQIDSFEAELEGLTVKKGKTRPPRLTHLE----TSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVER 215 (893)
Q Consensus 140 deL~~QiE~~EaEiE~Ls~KK~K~~~~r~~~le----~~ierhk~Hi~kLE~lLRlLdN~~l~pe~V~~IKddieyYve~ 215 (893)
|+|..+++.+-.+++.|.......-....+++. ..++.-+.++..+-.-++ +++.++-+.++.||..
T Consensus 1 e~l~~~l~~l~~d~~~l~~~~~~~~~~~~~~~r~~~~~~~~~a~~~~~~~~~~~~---------~~~~~~~~~~~~~V~e 71 (94)
T PF05957_consen 1 EDLKAELEQLRADLEDLARSAADLAGEKADEARDRAEEALDDARDRAEDAADQAR---------EQAREAAEQTEDYVRE 71 (94)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHH
Confidence 467777788888887774211111112222333 333333333333333332 6778888889999986
Q ss_pred C
Q 002678 216 N 216 (893)
Q Consensus 216 n 216 (893)
|
T Consensus 72 ~ 72 (94)
T PF05957_consen 72 N 72 (94)
T ss_pred C
Confidence 5
No 397
>PF15456 Uds1: Up-regulated During Septation
Probab=31.06 E-value=5.4e+02 Score=25.65 Aligned_cols=18 Identities=28% Similarity=0.547 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHhHHHHH
Q 002678 46 ADLKKEIKKLQRYRDQIK 63 (893)
Q Consensus 46 ~DLKKEIKKLQR~RDQIK 63 (893)
.+||||++.|.--=+.++
T Consensus 25 e~LKkEl~~L~~R~~~lr 42 (124)
T PF15456_consen 25 EELKKELRSLDSRLEYLR 42 (124)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 579999999975444444
No 398
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=31.00 E-value=2.6e+02 Score=32.44 Aligned_cols=18 Identities=33% Similarity=0.390 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 002678 83 ALVDARKLIEREMERFKI 100 (893)
Q Consensus 83 ~L~e~RKlIE~~MErFK~ 100 (893)
-...-|...|++||+.-+
T Consensus 215 ~~eklR~r~eeeme~~~a 232 (365)
T KOG2391|consen 215 VREKLRRRREEEMERLQA 232 (365)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344568888899998644
No 399
>cd07636 BAR_GRAF The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion kinase. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. GTPase Regulator Associated with Focal adhesion kinase (GRAF), also called Rho GTPase activating protein 26 (ARHGAP26), is a GAP with activity towards RhoA and Cdc42 and is only weakly active towards Rac1. It influences Rho-mediated cytoskeletal rearrangements and binds focal adhesion kinase (FAK), which is a critical component of integrin signaling. GRAF contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of GRAF directly interacts with its Rho GAP domain and inhibits its activity. Autoinhibited GRAF is capable o
Probab=30.96 E-value=7.2e+02 Score=26.95 Aligned_cols=68 Identities=13% Similarity=0.271 Sum_probs=38.4
Q ss_pred HHHHHHHHHhhhhcccCCCCchhHHHHHHHH--HHHHHHHHHHHHHHHhhhCCCCChhhhhhhhhHHHHHHHh
Q 002678 145 QIDSFEAELEGLTVKKGKTRPPRLTHLETSI--TRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVER 215 (893)
Q Consensus 145 QiE~~EaEiE~Ls~KK~K~~~~r~~~le~~i--erhk~Hi~kLE~lLRlLdN~~l~pe~V~~IKddieyYve~ 215 (893)
..|.+++-+++...-..|+++..+++.+..+ .|+.|+-..|+.++.+-. |..-.--+|.|.|--||..
T Consensus 119 ~se~~~~al~k~~~ls~k~K~~~~eEA~~~L~~~r~~F~~~sLdYV~qi~~---vq~rKkfefle~llsfm~a 188 (207)
T cd07636 119 ETEKYCAVLEKHLNLSSKKKESQLHEADSQVDLVRQHFYEVSLEYVFKVQE---VQERKMFEFVEPLLAFLQG 188 (207)
T ss_pred hhhHHHHHHHHHhcCcccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 3444555555543322333445677766655 789999999999986421 2222233455555556553
No 400
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=30.82 E-value=1.6e+02 Score=30.54 Aligned_cols=84 Identities=15% Similarity=0.254 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhc------------------ccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhC
Q 002678 133 DWLNNLVSELESQIDSFEAELEGLTV------------------KKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDN 194 (893)
Q Consensus 133 ~wL~~~IdeL~~QiE~~EaEiE~Ls~------------------KK~K~~~~r~~~le~~ierhk~Hi~kLE~lLRlLdN 194 (893)
+++...+++-+.++..++.-+..+.. +--++++.|+.+++.++..|---..+|=.--..|++
T Consensus 71 ~~~~~~l~ea~~~i~~i~~~~~~i~~~~~~~~~~~~~~~~~~I~~~v~~~P~~l~~a~~Fl~~yLp~~~~l~~kY~~l~~ 150 (199)
T PF10112_consen 71 EYIREILEEAKEKIRRIEKAIKRIRDLEMIEKVSRIEKIARRIFKYVEKDPERLTQARKFLYYYLPTAVKLLEKYAELES 150 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHCHHhHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 35666667777776666666554421 111334556666666665544444443333445667
Q ss_pred CCCChhhhhhhhhHHHHHHHhC
Q 002678 195 DELSPEQVNDVKDLLEDYVERN 216 (893)
Q Consensus 195 ~~l~pe~V~~IKddieyYve~n 216 (893)
..+..+++...+++++.-++.-
T Consensus 151 ~~~~~~~~~~~l~e~~~~L~~l 172 (199)
T PF10112_consen 151 QPVKSEEIKQSLEEIEETLDTL 172 (199)
T ss_pred ccCCChhHHHHHHHHHHHHHHH
Confidence 7777777777666666666543
No 401
>PF09210 DUF1957: Domain of unknown function (DUF1957); InterPro: IPR015293 This C-terminal domain is found in a set of hypothetical bacterial proteins that have a N-terminal domain related to the glycoside hydrolase family 57 family GH57 from CAZY. The exact function of this domain has not, as yet, been defined. ; PDB: 3N98_A 3N8T_A 3N92_A 1UFA_A 3P0B_A.
Probab=30.81 E-value=71 Score=30.66 Aligned_cols=36 Identities=17% Similarity=0.374 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhCCCCChhhhhhhh
Q 002678 171 LETSITRHKAHIMKLELILRLLDNDELSPEQVNDVK 206 (893)
Q Consensus 171 le~~ierhk~Hi~kLE~lLRlLdN~~l~pe~V~~IK 206 (893)
.+...+|-+.|+.++..|..+|.++.|+.+-+.+|.
T Consensus 53 ~~YA~~R~~~Hl~rF~~L~~~l~~~~id~~~L~~~E 88 (102)
T PF09210_consen 53 VEYARERFKEHLNRFWRLYDMLESGRIDEEWLEELE 88 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHS---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHH
Confidence 477889999999999999999999999966665554
No 402
>PF05149 Flagellar_rod: Paraflagellar rod protein; InterPro: IPR007824 This family consists of several eukaryotic paraflagellar rod component proteins. The eukaryotic flagellum represents one of the most complex macromolecular structures found in any organism and contains more than 250 proteins []. In addition to its locomotive role, the flagellum is probably involved in nutrient uptake since receptors for host low-density lipoproteins are localised on the flagellar membrane as well as on the flagellar pocket membrane [].; GO: 0005516 calmodulin binding, 0009434 microtubule-based flagellum
Probab=30.75 E-value=8.5e+02 Score=27.74 Aligned_cols=42 Identities=21% Similarity=0.235 Sum_probs=27.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhhhhhhhHHHHHHH
Q 002678 166 PRLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVE 214 (893)
Q Consensus 166 ~r~~~le~~ierhk~Hi~kLE~lLRlLdN~~l~pe~V~~IKddieyYve 214 (893)
.|....+.++.--.-|..+|+.+++.+ +....+=+.++.||.
T Consensus 98 ~R~~~~~~Fl~~~~qh~q~L~~~~~n~-------~~~~~~~~~~~~~V~ 139 (289)
T PF05149_consen 98 KRRTAAEEFLQAASQHKQRLRRCEENC-------DRALSCAESLEEYVQ 139 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 466667777777777888888877743 455555555555554
No 403
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=30.72 E-value=4.2e+02 Score=33.17 Aligned_cols=18 Identities=28% Similarity=0.634 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 002678 139 VSELESQIDSFEAELEGL 156 (893)
Q Consensus 139 IdeL~~QiE~~EaEiE~L 156 (893)
|+.|..+++.+++++..+
T Consensus 243 i~~l~~~l~~l~~~~~~l 260 (670)
T KOG0239|consen 243 IQALQQELEELKAELKEL 260 (670)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666666666666665554
No 404
>cd07676 F-BAR_FBP17 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 17. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Formin Binding Protein 17 (FBP17), also called FormiN Binding Protein 1 (FNBP1), is involved in dynamin-mediated endocytosis. It is recruited to clathrin-coated pits late in the endocytosis process and may play a role in the invagination and scission steps. FBP17 binds in vivo to tankyrase, a protein involved in telomere maintenance and mitogen activated protein kinase (MAPK) signaling. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=30.54 E-value=7.6e+02 Score=27.10 Aligned_cols=65 Identities=22% Similarity=0.234 Sum_probs=44.5
Q ss_pred HHHHHHHHHhhcCCCchhHHHHHHHHHHHHH-HHHHhHHHHHHhhccccccccccchhhHHHHHHHHHHHHHHHHH
Q 002678 23 DVFDSIWNKVYDTDNANQKEKFEADLKKEIK-KLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMER 97 (893)
Q Consensus 23 e~Fd~i~eK~~~a~n~nQKEKlE~DLKKEIK-KLQR~RDQIKtW~~s~eIKDK~~~~~~~~~L~e~RKlIE~~MEr 97 (893)
..|-.+|..+. .-+.+++.+-.+|-.+|- .|.++-.++|.|.-....+.. +|+..+.....+||+
T Consensus 67 ~aw~~~l~e~~--~~A~~H~~~~~~L~~~v~~~l~~~~~~~k~~rK~~~~~~~--------k~qk~~~~~~~~lek 132 (253)
T cd07676 67 RAFLMTLNEMN--DYAGQHEVISENLASQIIVELTRYVQELKQERKSHFHDGR--------KAQQHIETCWKQLES 132 (253)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHH
Confidence 45666666665 346789999998877664 488899999999988777653 345545444444444
No 405
>PF10359 Fmp27_WPPW: RNA pol II promoter Fmp27 protein domain; InterPro: IPR019449 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This entry represents a domain within FMP27 that contains characteristic HQR and WPPW sequence motifs.
Probab=30.51 E-value=1.2e+02 Score=35.96 Aligned_cols=65 Identities=29% Similarity=0.379 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCC
Q 002678 132 RDWLNNLVSELESQIDSFEAELEGLTVKKGKTR---PPRLTHLETSITRHKAHIMKLELILRLLDNDELS 198 (893)
Q Consensus 132 ~~wL~~~IdeL~~QiE~~EaEiE~Ls~KK~K~~---~~r~~~le~~ierhk~Hi~kLE~lLRlLdN~~l~ 198 (893)
++-|++=+++|+.||+.++..++.+.. +... ..+++.++..+...+-++..|+.+|+-|+.....
T Consensus 165 ~~L~~~Rl~~L~~qi~~~~~~l~~~~~--~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~ 232 (475)
T PF10359_consen 165 IELIQERLDELEEQIEKHEEKLGELEL--NPDDPELKSDIEELERHISSLKERIEFLENMLEDLEDSESS 232 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccc--ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 346778889999999999999888744 2211 3467777777888888888888888877765543
No 406
>PF08514 STAG: STAG domain ; InterPro: IPR013721 STAG domain proteins are subunits of cohesin complex - a protein complex required for sister chromatid cohesion in eukaryotes. The STAG domain is present in Schizosaccharomyces pombe (Fission yeast) mitotic cohesin Psc3, and the meiosis specific cohesin Rec11. Many organisms express a meiosis-specific STAG protein, for example, mice and humans have a meiosis specific variant called STAG3, although budding yeast does not have a meiosis specific version [].
Probab=30.49 E-value=97 Score=30.16 Aligned_cols=49 Identities=27% Similarity=0.349 Sum_probs=33.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCchhHHHHHHHHH
Q 002678 127 AKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSIT 176 (893)
Q Consensus 127 ek~E~~~wL~~~IdeL~~QiE~~EaEiE~Ls~KK~K~~~~r~~~le~~ie 176 (893)
.-.....-|.+++.+|..+++....+++.-..||++++ .|+++|+..|.
T Consensus 69 ~~l~i~t~L~~v~~~l~~~~~~~~rQl~aE~~k~~~~~-~r~~~l~~~i~ 117 (118)
T PF08514_consen 69 AALKIMTSLCDVAKSLSEELEKTQRQLEAEKKKKRKNK-SRLEELEQKIK 117 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccH-HHHHHHHHHhc
Confidence 34456667777888888888888888766544444433 48888887663
No 407
>PRK15041 methyl-accepting chemotaxis protein I; Provisional
Probab=30.44 E-value=3.5e+02 Score=32.20 Aligned_cols=61 Identities=7% Similarity=0.168 Sum_probs=43.1
Q ss_pred hHHHHhhhHHHhHHHHHHHHHHhhcCCC-chhHHHHHHHHHHHHHHHHHhHHHHHHhhcccc
Q 002678 10 EIDRVLKKVQEGVDVFDSIWNKVYDTDN-ANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSE 70 (893)
Q Consensus 10 EIDr~lKKV~EGve~Fd~i~eK~~~a~n-~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~e 70 (893)
+.+...+.+.+-++..+..|+++..... +..++.+-.++++..+...+.++.+..++..++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~y~~~~~~l~~l~~~~~ 147 (554)
T PRK15041 86 TVAELMQSASISLKQAEKNWADYEALPRDPRQSTAAAAEIKRNYDIYHNALAELIQLLGAGK 147 (554)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 4566677777777778888888876543 334555667788888888777888887776655
No 408
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=30.34 E-value=2.3e+02 Score=34.02 Aligned_cols=17 Identities=12% Similarity=0.272 Sum_probs=11.8
Q ss_pred ChhhhhhhhhHHHHHHH
Q 002678 198 SPEQVNDVKDLLEDYVE 214 (893)
Q Consensus 198 ~pe~V~~IKddieyYve 214 (893)
+++++++..++++.|+.
T Consensus 571 d~~~i~~~~~~l~~~~~ 587 (595)
T TIGR02350 571 DVEEIKAKTEELQQALQ 587 (595)
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 56677777777777765
No 409
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=30.24 E-value=9.5e+02 Score=31.97 Aligned_cols=50 Identities=8% Similarity=0.143 Sum_probs=25.5
Q ss_pred HHHhhhccccccccccCCCCCCCchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002678 100 ICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEG 155 (893)
Q Consensus 100 ~vEKesKtKafSkEGL~~~~k~DP~ekek~E~~~wL~~~IdeL~~QiE~~EaEiE~ 155 (893)
.++++||.+.=+..++-. +-.+-.+-..|+...|+++..++..+..-+-+
T Consensus 385 ~ln~~~r~~~~~ld~~~~------~~~elE~r~k~l~~sver~~~~~~~L~~~i~s 434 (1141)
T KOG0018|consen 385 VLNRNMRSDQDTLDHELE------RRAELEARIKQLKESVERLDKRRNKLAAKITS 434 (1141)
T ss_pred HHHHHHHHHHHHHhhHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666665544433321 12233334556666666666666655554433
No 410
>PF12848 ABC_tran_2: ABC transporter
Probab=30.17 E-value=1.7e+02 Score=25.89 Aligned_cols=32 Identities=19% Similarity=0.268 Sum_probs=18.3
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHhhccccc
Q 002678 40 QKEKFEADLKKEIKKLQRYRDQIKTWIQSSEI 71 (893)
Q Consensus 40 QKEKlE~DLKKEIKKLQR~RDQIKtW~~s~eI 71 (893)
||+....-+.++..++|+.+.+++.|+....-
T Consensus 21 ~k~~~~~~~~~~~~~~~k~~~~l~~~i~r~~~ 52 (85)
T PF12848_consen 21 QKEERRERQERQYEKQQKEIKRLEEFIRRFRA 52 (85)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555566666666666666655444
No 411
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=30.10 E-value=8.3e+02 Score=27.41 Aligned_cols=164 Identities=20% Similarity=0.264 Sum_probs=82.2
Q ss_pred cchhhhHHHHhhhHHHhHHHHHHHHHHhh------cCCCchhHHHHHHH-------HHHHHHHHHHhHHHHHHhhccc--
Q 002678 5 RKLQGEIDRVLKKVQEGVDVFDSIWNKVY------DTDNANQKEKFEAD-------LKKEIKKLQRYRDQIKTWIQSS-- 69 (893)
Q Consensus 5 RKLQ~EIDr~lKKV~EGve~Fd~i~eK~~------~a~n~nQKEKlE~D-------LKKEIKKLQR~RDQIKtW~~s~-- 69 (893)
..|.++|.-|=+-+..+|..+=.-|+++- +..|.++.+-..+| .++++.+||+-=|+++.=+...
T Consensus 23 ~~L~~~IqdtE~st~~~Vr~lLqqy~~~~~~i~~le~~~~~~l~~ak~eLqe~eek~e~~l~~Lq~ql~~l~akI~k~~~ 102 (258)
T PF15397_consen 23 KELIKEIQDTEDSTALKVRKLLQQYDIYRTAIDILEYSNHKQLQQAKAELQEWEEKEESKLSKLQQQLEQLDAKIQKTQE 102 (258)
T ss_pred HHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 34566665554444444444444444433 33455555444444 4566777777777776655442
Q ss_pred ------cccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCCCchHHhHHHHHHHHHHHHHHHH
Q 002678 70 ------EIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELE 143 (893)
Q Consensus 70 ------eIKDK~~~~~~~~~L~e~RKlIE~~MErFK~vEKesKtKafSkEGL~~~~k~DP~ekek~E~~~wL~~~IdeL~ 143 (893)
-.|||. |+.+.+--..|. ++.+.-| |-.+.|..|...-++.....|.
T Consensus 103 el~~L~TYkD~E----YPvK~vqIa~L~-rqlq~lk----------------------~~qqdEldel~e~~~~el~~l~ 155 (258)
T PF15397_consen 103 ELNFLSTYKDHE----YPVKAVQIANLV-RQLQQLK----------------------DSQQDELDELNEMRQMELASLS 155 (258)
T ss_pred HHHHHHHHhhhh----hhHHHHHHHHHH-HHHHHHH----------------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 234544 433332222111 1111110 1123344445555555555555
Q ss_pred HHHHHHHHHHhhhhcccC-C-------CCchhHHHHHHHHHHHHHHHHHHHHHHHhhhCC
Q 002678 144 SQIDSFEAELEGLTVKKG-K-------TRPPRLTHLETSITRHKAHIMKLELILRLLDND 195 (893)
Q Consensus 144 ~QiE~~EaEiE~Ls~KK~-K-------~~~~r~~~le~~ierhk~Hi~kLE~lLRlLdN~ 195 (893)
.++..-..+|-+-...|- + ...-.-..+...|.+|+-+|..||..+..|.++
T Consensus 156 ~~~q~k~~~il~~~~~k~~~~~~~~l~~~~~~N~~m~kei~~~re~i~el~e~I~~L~~e 215 (258)
T PF15397_consen 156 RKIQEKKEEILSSAAEKTQSPMQPALLQRTLENQVMQKEIVQFREEIDELEEEIPQLRAE 215 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555544211110 1 000112457788999999999999988887753
No 412
>cd01107 HTH_BmrR Helix-Turn-Helix DNA binding domain of the BmrR transcription regulator. Helix-turn-helix (HTH) multidrug-efflux transporter transcription regulator, BmrR and YdfL of Bacillus subtilis, and related proteins; N-terminal domain. Bmr is a membrane protein which causes the efflux of a variety of toxic substances and antibiotics. BmrR is comprised of two distinct domains that harbor a regulatory (effector-binding) site and an active (DNA-binding) site. The conserved N-terminal domain contains a winged HTH motif that mediates DNA binding, while the C-terminal domain binds coactivating, toxic compounds. BmrR shares the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=29.96 E-value=1.1e+02 Score=28.81 Aligned_cols=25 Identities=28% Similarity=0.379 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhhc
Q 002678 43 KFEADLKKEIKKLQRYRDQIKTWIQ 67 (893)
Q Consensus 43 KlE~DLKKEIKKLQR~RDQIKtW~~ 67 (893)
.-..+|.++|++||+.++.|+.++.
T Consensus 82 ~~~~~l~~~i~~l~~~~~~l~~~l~ 106 (108)
T cd01107 82 EKLAELEAEIEELQRILRLLEDRLK 106 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456788999999999999998764
No 413
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=29.88 E-value=1.4e+02 Score=30.95 Aligned_cols=56 Identities=21% Similarity=0.353 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCCCchHHhHHHHHHHHHHHHHHHHHHHH
Q 002678 83 ALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQID 147 (893)
Q Consensus 83 ~L~e~RKlIE~~MErFK~vEKesKtKafSkEGL~~~~k~DP~ekek~E~~~wL~~~IdeL~~QiE 147 (893)
+=.+.|..|..+.-| +|-++|-=++=.+.|.. -.||.-++- .+|..-||..++|+.
T Consensus 46 kKmeVrekVq~~Lgr---veEetkrLa~ireeLE~--l~dP~RkEv----~~vRkkID~vNreLk 101 (159)
T PF04949_consen 46 KKMEVREKVQAQLGR---VEEETKRLAEIREELEV--LADPMRKEV----EMVRKKIDSVNRELK 101 (159)
T ss_pred HHHHHHHHHHHHHhH---HHHHHHHHHHHHHHHHh--hccchHHHH----HHHHHHHHHHHHHhh
Confidence 345666666666655 77777777777777753 237744432 244444444444443
No 414
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=29.83 E-value=4.5e+02 Score=32.99 Aligned_cols=68 Identities=24% Similarity=0.273 Sum_probs=48.2
Q ss_pred cchhhhHHHHhhhHHHhHHHHHHHHHHhh---------------cCCC--------------chhHHHHHHHHHHHHHHH
Q 002678 5 RKLQGEIDRVLKKVQEGVDVFDSIWNKVY---------------DTDN--------------ANQKEKFEADLKKEIKKL 55 (893)
Q Consensus 5 RKLQ~EIDr~lKKV~EGve~Fd~i~eK~~---------------~a~n--------------~nQKEKlE~DLKKEIKKL 55 (893)
+-||.|...=|+||.+=+..-..+|+-+- +..+ +...++|+++=++-+.||
T Consensus 170 ~~L~~ek~~Rlekv~~~~~~I~~l~~~Lg~~~~~~vt~~~~sL~~~~~~~~~~is~etl~~L~~~v~~l~~~k~qr~~kl 249 (660)
T KOG4302|consen 170 NELQKEKSDRLEKVLELKEEIKSLCSVLGLDFSMTVTDVEPSLVDHDGEQSRSISDETLDRLDKMVKKLKEEKKQRLQKL 249 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhhhhhhhhhccCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788999999999988877766665432 2222 345677888888888888
Q ss_pred HHhHHHHHHhhcccccc
Q 002678 56 QRYRDQIKTWIQSSEIK 72 (893)
Q Consensus 56 QR~RDQIKtW~~s~eIK 72 (893)
|-+|++|-..-+.-++-
T Consensus 250 ~~l~~~~~~LWn~l~ts 266 (660)
T KOG4302|consen 250 QDLRTKLLELWNLLDTS 266 (660)
T ss_pred HHHHHHHHHHHHhccCC
Confidence 88888887755554433
No 415
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=29.73 E-value=6.2e+02 Score=29.76 Aligned_cols=19 Identities=32% Similarity=0.345 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHhHH
Q 002678 42 EKFEADLKKEIKKLQRYRD 60 (893)
Q Consensus 42 EKlE~DLKKEIKKLQR~RD 60 (893)
--+|..-.|-||+|.--|+
T Consensus 110 aAaE~khrKli~dLE~dRe 128 (561)
T KOG1103|consen 110 AAAEKKHRKLIKDLEADRE 128 (561)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344445555555554444
No 416
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=29.71 E-value=18 Score=44.41 Aligned_cols=52 Identities=23% Similarity=0.379 Sum_probs=0.0
Q ss_pred cchhhhHHHHhhhHHHhHHHHHHHHHHhhcCCC-----chhHHHHHHHHHHHHHHHH
Q 002678 5 RKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDN-----ANQKEKFEADLKKEIKKLQ 56 (893)
Q Consensus 5 RKLQ~EIDr~lKKV~EGve~Fd~i~eK~~~a~n-----~nQKEKlE~DLKKEIKKLQ 56 (893)
+.|+.++++.++++.+-..--..++++...... .++.+-++.+|-+++++||
T Consensus 96 ~~l~~~~~~~~~~~~ele~~~~~l~~~~~~le~el~~~~e~~~~~k~~le~~~~~L~ 152 (722)
T PF05557_consen 96 RELQRQLEREFKRNQELEARLKQLEEREEELEEELEEAEEELEQLKRKLEEEKRRLQ 152 (722)
T ss_dssp ---------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555566655544444444443322211 2223344444455555554
No 417
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=29.64 E-value=4.9e+02 Score=24.72 Aligned_cols=42 Identities=17% Similarity=0.284 Sum_probs=23.0
Q ss_pred HHhHHHHHHhhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002678 56 QRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKET 105 (893)
Q Consensus 56 QR~RDQIKtW~~s~eIKDK~~~~~~~~~L~e~RKlIE~~MErFK~vEKes 105 (893)
..-|+.|..|...-+-+.+ .|.+.+..|+..+.+|...=++.
T Consensus 17 ~~kr~e~~~~~~~~~~~e~--------~L~~~e~~l~~~~~~f~~flken 58 (126)
T PF13863_consen 17 DTKREEIERREEQLKQREE--------ELEKKEQELEEDVIKFDKFLKEN 58 (126)
T ss_pred HHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444445555444433332 47777777777777775544433
No 418
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=29.61 E-value=1.1e+02 Score=36.57 Aligned_cols=31 Identities=16% Similarity=0.291 Sum_probs=22.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002678 126 KAKSETRDWLNNLVSELESQIDSFEAELEGL 156 (893)
Q Consensus 126 kek~E~~~wL~~~IdeL~~QiE~~EaEiE~L 156 (893)
+-...+..--+...++|++|++.++.|++.+
T Consensus 65 kVnqSALteqQ~kasELEKqLaaLrqElq~~ 95 (475)
T PRK13729 65 KVRQHATTEMQVTAAQMQKQYEEIRRELDVL 95 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455566678899999999998888766
No 419
>COG5481 Uncharacterized conserved small protein containing a coiled-coil domain [Function unknown]
Probab=29.57 E-value=2.4e+02 Score=25.37 Aligned_cols=31 Identities=26% Similarity=0.266 Sum_probs=26.8
Q ss_pred hhhhHHHHhhhHHHhHHHHHHHHHHhhcCCC
Q 002678 7 LQGEIDRVLKKVQEGVDVFDSIWNKVYDTDN 37 (893)
Q Consensus 7 LQ~EIDr~lKKV~EGve~Fd~i~eK~~~a~n 37 (893)
=|.||.++|-++.+.-+-||.--+-+....-
T Consensus 5 dqaeirl~~arLrqeH~D~DaaInAmi~~~c 35 (67)
T COG5481 5 DQAEIRLTLARLRQEHADFDAAINAMIATGC 35 (67)
T ss_pred cHHHHHHHHHHHHHHHhhHHHHHHHHHHhCC
Confidence 3789999999999999999998888876544
No 420
>KOG4484 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.56 E-value=1.4e+02 Score=31.59 Aligned_cols=33 Identities=21% Similarity=0.262 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHhhhCCC-C-C---hhhhhhhhhHHHHHHH
Q 002678 180 AHIMKLELILRLLDNDE-L-S---PEQVNDVKDLLEDYVE 214 (893)
Q Consensus 180 ~Hi~kLE~lLRlLdN~~-l-~---pe~V~~IKddieyYve 214 (893)
..|.+||.++| +.+. + | -+++..+|+|++|...
T Consensus 93 R~irrLeK~~k--eS~ad~kd~~i~~qlrk~kidL~YVr~ 130 (199)
T KOG4484|consen 93 RSIRRLEKLIK--ESGADVKDKQIQQQLRKLKIDLEYVRF 130 (199)
T ss_pred HHHHHHHHHHH--hhccchhhHHHHHHHHHHHHHHHHHHh
Confidence 35788999998 4433 2 2 3467789999998775
No 421
>PF03234 CDC37_N: Cdc37 N terminal kinase binding; InterPro: IPR013855 In Saccharomyces cerevisiae (Baker's yeast), cell division control protein Cdc37 is required for the productive formation of Cdc28-cyclin complexes. Cdc37 may be a kinase targeting subunit of Hsp90 [].
Probab=29.55 E-value=5.8e+02 Score=27.00 Aligned_cols=21 Identities=19% Similarity=0.121 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 002678 171 LETSITRHKAHIMKLELILRL 191 (893)
Q Consensus 171 le~~ierhk~Hi~kLE~lLRl 191 (893)
-...+++.+.|..+|+.+.+-
T Consensus 129 ~~~~~~~l~~H~~kl~~~~ke 149 (177)
T PF03234_consen 129 GKAELEELQEHRAKLEKEQKE 149 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 556677777788777777663
No 422
>PF07352 Phage_Mu_Gam: Bacteriophage Mu Gam like protein; InterPro: IPR009951 The Gam protein, originally characterised in Bacteriophage Mu, protects linear double stranded DNA from exonuclease degradation in vitro and in vivo []. This protein is also found in many bacterial species as part of a suspected prophage. Further studies have shown that Gam is a functional counterpart of the eukaryotic Ku protein, which has key roles in DNA repair and in certain transposition events. Gam displays DNA binding characteristics remarkably similar to those of human Ku []. In addition, Gam can interfere with Ty1 retrotransposition in Saccharomyces cerevisiae (Baker's yeast). These data reveal structural and functional parallels between bacteriophage Gam and eukaryotic Ku and suggest that their functions have been evolutionarily conserved [].; GO: 0003690 double-stranded DNA binding, 0042262 DNA protection; PDB: 2P2U_B.
Probab=29.40 E-value=2.8e+02 Score=27.74 Aligned_cols=62 Identities=29% Similarity=0.481 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhhhhhhhHH
Q 002678 130 ETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLL 209 (893)
Q Consensus 130 E~~~wL~~~IdeL~~QiE~~EaEiE~Ls~KK~K~~~~r~~~le~~ierhk~Hi~kLE~lLRlLdN~~l~pe~V~~IKddi 209 (893)
+-.+|.-.-|.+|+++++.+|++++. ++...-+++.-++..|+ .+|+.+...|
T Consensus 3 ~~a~~al~ki~~l~~~~~~i~~~~~~--------------~I~~i~~~~~~~~~~l~-------------~~i~~l~~~l 55 (149)
T PF07352_consen 3 EEADWALRKIAELQREIARIEAEAND--------------EIARIKEWYEAEIAPLQ-------------NRIEYLEGLL 55 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHCHHHH-------------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHH-------------HHHHHHHHHH
Confidence 34577778899999999999998743 23333344444444443 4556666677
Q ss_pred HHHHHhCCC
Q 002678 210 EDYVERNQD 218 (893)
Q Consensus 210 eyYve~nqd 218 (893)
..|.+.|-+
T Consensus 56 ~~y~e~~r~ 64 (149)
T PF07352_consen 56 QAYAEANRD 64 (149)
T ss_dssp HHHHHCTHH
T ss_pred HHHHHHCHH
Confidence 777776655
No 423
>PF02203 TarH: Tar ligand binding domain homologue; InterPro: IPR003122 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the ligand-binding domain found in a number of methyl-accepting chemotaxis receptors.; GO: 0004888 transmembrane signaling receptor activity, 0006935 chemotaxis, 0007165 signal transduction, 0016020 membrane; PDB: 2ASR_A 3ATP_A 2D4U_A 2LIG_A 1VLS_A 1LIH_A 1WAT_B 1VLT_B 1WAS_A 1JMW_A.
Probab=29.35 E-value=3.5e+02 Score=26.21 Aligned_cols=62 Identities=11% Similarity=0.280 Sum_probs=45.0
Q ss_pred HHHhhhHHHhHHHHHHHHHHhhcCCCch-hHHHHHHHHHHHHHH-HHHhHHHHHHhhccccccc
Q 002678 12 DRVLKKVQEGVDVFDSIWNKVYDTDNAN-QKEKFEADLKKEIKK-LQRYRDQIKTWIQSSEIKD 73 (893)
Q Consensus 12 Dr~lKKV~EGve~Fd~i~eK~~~a~n~n-QKEKlE~DLKKEIKK-LQR~RDQIKtW~~s~eIKD 73 (893)
.+.+..+.+-++..+..|+.+......+ .-..+..+|++...+ ++.--+++-.++..+|+.+
T Consensus 81 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~al~~~d~~~ 144 (171)
T PF02203_consen 81 AELLARAEQNLEQAEQAFDAFKALPHASPEERALADELEASFDAYLQQALDPLLAALRAGDIAA 144 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCS---GTGGHHHHHHHHHHHHH-HHHHHHHHHHHHHTT-HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHHHhHHHHHHHHHCCCHHH
Confidence 5677777888888888888888777766 555688888888888 7666678888888887663
No 424
>PF01044 Vinculin: Vinculin family; InterPro: IPR006077 Vinculin is a eukaryotic protein that seems to be involved in the attachment of the actin-based microfilaments to the plasma membrane. Vinculin is located at the cytoplasmic side of focal contacts or adhesion plaques []. In addition to actin, vinculin interacts with other structural proteins such as talin and alpha-actinins. Vinculin is a large protein of 116 kDa (about a 1000 residues). Structurally the protein consists of an acidic N-terminal domain of about 90 kDa separated from a basic C-terminal domain of about 25 kDa by a proline-rich region of about 50 residues. The central part of the N-terminal domain consists of a variable number (3 in vertebrates, 2 in Caenorhabditis elegans) of repeats of a 110 amino acids domain. Alpha-catenins are evolutionary related to vinculin IPR001033 from INTERPRO []. Catenins are proteins that associate with the cytoplasmic domain of a variety of cadherins. The association of catenins to cadherins produces a complex which is linked to the actin filament network, and which seems to be of primary importance for cadherins cell-adhesion properties. Three different types of catenins seem to exist: alpha, beta, and gamma. Alpha-catenins are proteins of about 100 kDa which are evolutionary related to vinculin. In terms of their structure the most significant differences are the absence, in alpha-catenin, of the repeated domain and of the proline-rich segment.; GO: 0005198 structural molecule activity, 0007155 cell adhesion, 0015629 actin cytoskeleton; PDB: 3S90_B 1TR2_B 2IBF_A 1RKC_A 3TJ5_A 3RF3_B 4DJ9_A 2GWW_A 2HSQ_A 3TJ6_A ....
Probab=29.27 E-value=1.4e+03 Score=29.84 Aligned_cols=146 Identities=18% Similarity=0.278 Sum_probs=71.6
Q ss_pred HHHhHHHHHHhhccccccccc-cchhhHHHHHHHHHHHHHHH--------HHHHHHHhhhccccccccccCCCCC-CCch
Q 002678 55 LQRYRDQIKTWIQSSEIKDKK-VSASYEQALVDARKLIEREM--------ERFKICEKETKTKAFSKEGLGQQPK-TDPK 124 (893)
Q Consensus 55 LQR~RDQIKtW~~s~eIKDK~-~~~~~~~~L~e~RKlIE~~M--------ErFK~vEKesKtKafSkEGL~~~~k-~DP~ 124 (893)
+..-=||-..|+.+..+.|+. +.+-.+.-|.++|++.+..- +.-+.|++.+ ..+.. |....+ .+|+
T Consensus 384 ~~~kl~qA~~wl~~p~~dd~g~g~~AL~~lv~e~~~~A~~~~~~~R~~Il~lc~~i~~l~--~qL~d--L~~~~~~~spe 459 (968)
T PF01044_consen 384 VAGKLEQAQRWLANPGVDDGGAGRQALRDLVEEARKLADSSDPEEREEILELCDEIEQLT--NQLAD--LEMRGEGDSPE 459 (968)
T ss_dssp HHHHHHHHHHHHCSTSS--SCHHHHHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHH--HHHHH--HCHCSCCSSHH
T ss_pred cccccccccccccccccccHHHHHHHHHHHHHHHHHHHhccccchHHhHHHHHHHHHHhc--chhhh--hhhccCCCccc
Confidence 334457899999999887665 33334444445554433211 1111122211 11111 111111 1342
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHH--Hhh----------h--hcccCCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 002678 125 EKAKSETRDWLNNLVSELESQIDSFEAE--LEG----------L--TVKKGKTRPPRLTHLETSITRHKAHIMKLELILR 190 (893)
Q Consensus 125 ekek~E~~~wL~~~IdeL~~QiE~~EaE--iE~----------L--s~KK~K~~~~r~~~le~~ierhk~Hi~kLE~lLR 190 (893)
..+...-|...+.+|++++..-=.+ .|. | ..+..-..+-|.+.++........|..+|-.+-+
T Consensus 460 ---a~~la~~L~~~l~~L~~~l~~a~~~qv~d~F~d~~~pL~~L~~Aa~~~~~~~g~e~~~~~~a~~F~~ha~~l~~vA~ 536 (968)
T PF01044_consen 460 ---AKALAEQLSQKLDDLRQQLQKAVVDQVSDTFTDTTTPLKELVEAAKAPSGTPGREENFEEKAQNFQEHADQLVEVAR 536 (968)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHTTSSSHHHHHHHHHHHT-TTSTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---ccccccchhhhHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2344556778888888776431110 011 1 0122112234566677777777778888777777
Q ss_pred hhhCCC-CChhhhhhhhh
Q 002678 191 LLDNDE-LSPEQVNDVKD 207 (893)
Q Consensus 191 lLdN~~-l~pe~V~~IKd 207 (893)
++-.-. -+.+.|+.|+.
T Consensus 537 lva~~s~~d~~~v~~I~~ 554 (968)
T PF01044_consen 537 LVAAMSCTDEETVKEIRH 554 (968)
T ss_dssp HHHHHSS-HHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHH
Confidence 777655 45666666654
No 425
>KOG1451 consensus Oligophrenin-1 and related Rho GTPase-activating proteins [Signal transduction mechanisms]
Probab=29.21 E-value=5.9e+02 Score=31.87 Aligned_cols=153 Identities=20% Similarity=0.219 Sum_probs=78.7
Q ss_pred hhHHHHhhhHHHhHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhHHHHHHhhccccccccccchhhHHHHHHHH
Q 002678 9 GEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDAR 88 (893)
Q Consensus 9 ~EIDr~lKKV~EGve~Fd~i~eK~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~eIKDK~~~~~~~~~L~e~R 88 (893)
.|+||++|-|.|-|..=.++---+. +|-.-.+|=-+-||.|.= ..+..++--|.. ..+..|.|.-
T Consensus 27 ~el~~tnkfik~~ikdg~~li~a~k---------nls~a~~kfa~tl~~f~f---~~igd~~tdde~---~ia~slkefa 91 (812)
T KOG1451|consen 27 VELDRTNKFIKELIKDGKELISALK---------NLSSAVRKFAQTLQEFKF---ECIGDAETDDEI---FIATSLKEFA 91 (812)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHH---------HHHHHHHHHHHHHHhhee---eeccccccchHH---HHHHHHHHHH
Confidence 6889999988876654333322221 111112222233333321 112333333332 2334566643
Q ss_pred HH-HHHHHHHHHHHHhhhccccccccccCCCCCCCchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---hcccCCCC
Q 002678 89 KL-IEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGL---TVKKGKTR 164 (893)
Q Consensus 89 Kl-IE~~MErFK~vEKesKtKafSkEGL~~~~k~DP~ekek~E~~~wL~~~IdeL~~QiE~~EaEiE~L---s~KK~K~~ 164 (893)
.+ ++.+=||-+.|+ +..|.|. .|.|+=|.|.+.++++--....+.-|.|=.-+|+- +.|| ..
T Consensus 92 ~ll~~ve~er~~~v~-------~Ase~li-----~PlekFRkEqIG~~KE~KkKydKe~ekfy~~LekHLhLSskk--es 157 (812)
T KOG1451|consen 92 SLLNQVEDERMRMVG-------NASESLI-----EPLEKFRKEQIGTLKEEKKKYDKESEKFYQTLEKHLHLSSKK--ES 157 (812)
T ss_pred HHHHHHHHHHHHHHh-------hhHHHHH-----hHHHHHHHHHhhhhHHHHhhhhhhhHHHHHHHHHHhccccch--hh
Confidence 33 344445555444 3344444 46777666666665555555555555555555542 3344 33
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHH
Q 002678 165 PPRLTHLETSITRHKAHIMKLELILR 190 (893)
Q Consensus 165 ~~r~~~le~~ierhk~Hi~kLE~lLR 190 (893)
+=+-++++--.+||+|...-|+-+..
T Consensus 158 qlqeAD~Qvd~~r~nFfe~SL~YV~~ 183 (812)
T KOG1451|consen 158 QLQEADAQVDTQRKNFFEASLQYVAE 183 (812)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666667899999999888764
No 426
>TIGR00962 atpA proton translocating ATP synthase, F1 alpha subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. The alpha-subunit contains a highly conserved adenine-specific noncatalytic nucleotide-binding domain. The conserved amino acid sequence is Gly-X-X-X-X-Gly-Lys. Proton translocating ATP synthase F1, alpha subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), B subunit.
Probab=29.18 E-value=4.8e+02 Score=31.57 Aligned_cols=121 Identities=16% Similarity=0.165 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCCCchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hcccC
Q 002678 83 ALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGL-TVKKG 161 (893)
Q Consensus 83 ~L~e~RKlIE~~MErFK~vEKesKtKafSkEGL~~~~k~DP~ekek~E~~~wL~~~IdeL~~QiE~~EaEiE~L-s~KK~ 161 (893)
...+....+-..+-+|+++|.-.+.. ..+|+..+...+-..-|.+++.+=...--.++.++.-| ...+|
T Consensus 373 ~~~~~a~~lr~~la~y~e~~~l~~~g----------~~ld~~~~~~l~~~~~i~~fL~Q~~~~~~~~~~q~~~l~a~~~G 442 (501)
T TIGR00962 373 AMKQVAGSLRLELAQYRELEAFSQFA----------SDLDEATKAQLERGKRLVELLKQPQYKPLPVEEQVVILYAGTKG 442 (501)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh----------ccCCHHHHHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhcC
Confidence 34444455556677888888776653 23566555444433333322211110012333343333 23444
Q ss_pred --CCCchhHHHHHHHHHHHHHHHH-HHHHHHHhh-hCCCCChhhhhhhhhHHHHHHHh
Q 002678 162 --KTRPPRLTHLETSITRHKAHIM-KLELILRLL-DNDELSPEQVNDVKDLLEDYVER 215 (893)
Q Consensus 162 --K~~~~r~~~le~~ierhk~Hi~-kLE~lLRlL-dN~~l~pe~V~~IKddieyYve~ 215 (893)
+.- .++++..+......|+. +.-.+++.+ ++..|+.+.-+.|++.|..|++.
T Consensus 443 ~l~~v--~~~~i~~~~~~l~~~l~~~~~~~~~~i~~~~~l~~~~~~~L~~~i~~~~~~ 498 (501)
T TIGR00962 443 YLDDI--PVDKVRKFEQELLDYLDANHPDILEEINTKKKLTEELEDKLKEALKNFKKT 498 (501)
T ss_pred Ccccc--cHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHh
Confidence 221 12234444433333331 223333444 35679988888899999999874
No 427
>PF02646 RmuC: RmuC family; InterPro: IPR003798 This protein contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures []. Proteins in this family are predicted to contain a central endonuclease-like fold domain, surrounded by coiled coils, consistent with a direct role in DNA cleavage [, ].
Probab=29.17 E-value=1.3e+02 Score=33.47 Aligned_cols=47 Identities=19% Similarity=0.433 Sum_probs=34.7
Q ss_pred hhhHHHHhhhHHHhHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhH
Q 002678 8 QGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYR 59 (893)
Q Consensus 8 Q~EIDr~lKKV~EGve~Fd~i~eK~~~a~n~nQKEKlE~DLKKEIKKLQR~R 59 (893)
|+.|+.+++-|.|-++.|+..-++++.. ..+--+.|+++|++|+...
T Consensus 1 ~~~l~~l~~pl~e~l~~~~~~l~~~~~~-----~~~~~~~L~~~l~~l~~~~ 47 (304)
T PF02646_consen 1 QEQLEQLLKPLKEQLEKFEKRLEESFEQ-----RSEEFGSLKEQLKQLSEAN 47 (304)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhh
Confidence 5789999999999999888766655432 2344477888887776666
No 428
>PF01627 Hpt: Hpt domain; InterPro: IPR008207 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents a domain present at the N terminus in proteins which undergo autophosphorylation. The group includes, the gliding motility regulatory protein from Myxococcus xanthus and a number of bacterial chemotaxis proteins.; GO: 0004871 signal transducer activity, 0000160 two-component signal transduction system (phosphorelay); PDB: 3KYJ_A 3KYI_A 3IQT_A 1Y6D_A 2LD6_A 1TQG_A 2R25_A 1OXB_A 1QSP_B 1C03_B ....
Probab=29.17 E-value=2.1e+02 Score=24.43 Aligned_cols=79 Identities=23% Similarity=0.296 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcc---cCCCCchhHHHHHHHH--HHHHHHHHHHHHHHHhhhCCCCChhhhhhhhhH
Q 002678 134 WLNNLVSELESQIDSFEAELEGLTVK---KGKTRPPRLTHLETSI--TRHKAHIMKLELILRLLDNDELSPEQVNDVKDL 208 (893)
Q Consensus 134 wL~~~IdeL~~QiE~~EaEiE~Ls~K---K~K~~~~r~~~le~~i--erhk~Hi~kLE~lLRlLdN~~l~pe~V~~IKdd 208 (893)
+|..+++++...++.++..+..+... .-+.--.++.-.-..+ .+-......||.+++..+.... +.+..+-+.
T Consensus 2 ll~~f~~~~~~~~~~l~~~~~~~~~~d~~~l~~~~H~lkG~a~~~g~~~l~~~~~~lE~~~~~~~~~~~--~~~~~~~~~ 79 (90)
T PF01627_consen 2 LLDIFLEEAPEDLEQLEQALQALEQEDWEELRRLAHRLKGSAGNLGAPRLAELAEQLEQALKSGDKPEA--EELEQLLDE 79 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCSSHHCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTHHHHS--HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHhhhHHhcCHHHHHHHHHHHHHHHHcCCccch--hHHHHHHHH
Confidence 55666677777777777766433200 0000000111111111 3556667778877776665555 566666677
Q ss_pred HHHHHH
Q 002678 209 LEDYVE 214 (893)
Q Consensus 209 ieyYve 214 (893)
|+.+|+
T Consensus 80 l~~~l~ 85 (90)
T PF01627_consen 80 LEAMLE 85 (90)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 766665
No 429
>cd07654 F-BAR_FCHSD The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH and double SH3 domains proteins (FCHSD). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of FCH and double SH3 domain (FCHSD) proteins, so named as they contain an N-terminal F-BAR domain and two SH3 domains at the C-terminus. Vertebrates harbor two subfamily members, FCHSD1 and FCHSD2, which have been characterized only in silico. Their biological function is still unknown. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=29.10 E-value=1.3e+02 Score=33.18 Aligned_cols=38 Identities=11% Similarity=0.131 Sum_probs=25.4
Q ss_pred cchhhhHHHHhhhHHHhHHHHHHHHHHhhcCCCchhHHHHHHH
Q 002678 5 RKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEAD 47 (893)
Q Consensus 5 RKLQ~EIDr~lKKV~EGve~Fd~i~eK~~~a~n~nQKEKlE~D 47 (893)
++||+|++++++.+.----.|+......+.+ |+|++.-
T Consensus 120 ~~lq~el~~~~~eL~ksKK~Y~~~~~~~~~a-----r~K~~~a 157 (264)
T cd07654 120 QRAQAEVQQTVRELSKSRKTYFEREQVAHLA-----REKAADV 157 (264)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-----HHHHHHH
Confidence 5788888888887777777776655533322 6777653
No 430
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=29.06 E-value=7.3e+02 Score=32.54 Aligned_cols=50 Identities=28% Similarity=0.384 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhhhccccccccccCCCCCCCchHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002678 93 REMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSE-TRDWLNNLVSELESQIDSFEAELEGL 156 (893)
Q Consensus 93 ~~MErFK~vEKesKtKafSkEGL~~~~k~DP~ekek~E-~~~wL~~~IdeL~~QiE~~EaEiE~L 156 (893)
.+||+-|. +|-+|.|+ .+++.+.| ....|+..|++..+=-+.++...|+|
T Consensus 1101 kr~e~ik~-~~~~kdK~-------------e~er~~rE~n~s~i~~~V~e~krL~~~~~k~~e~L 1151 (1189)
T KOG1265|consen 1101 KRMEDIKV-DKVIKDKA-------------ERERRKRELNSSNIKEFVEERKRLAEKQSKRQEQL 1151 (1189)
T ss_pred HHHHhhhh-ccccccHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666665 55555442 23444444 55667777777766666666666666
No 431
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=28.96 E-value=1.1e+03 Score=31.46 Aligned_cols=64 Identities=22% Similarity=0.280 Sum_probs=49.8
Q ss_pred cchhhhHHHHhhhHHHhHHHHHHHHHHhhcCCCc--------hhHHHHHHHHHHHHHHHHHhHHHHHHhhcc
Q 002678 5 RKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNA--------NQKEKFEADLKKEIKKLQRYRDQIKTWIQS 68 (893)
Q Consensus 5 RKLQ~EIDr~lKKV~EGve~Fd~i~eK~~~a~n~--------nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s 68 (893)
++|..|.+++-+++..-...+...++++..+... .+.+|.|.-|-+--.||||.-+.-+.-+++
T Consensus 479 ~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l~~~e~ii~~~~~se~~l~~~a~~l~~~~~~s~~d~s~ 550 (1041)
T KOG0243|consen 479 ELLKEEKEKLKSKLQNKNKELESLKEELQQAKATLKEEEEIISQQEKSEEKLVDRATKLRRSLEESQDDLSS 550 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677788888888888877777777777766654 567888888888888888888887777764
No 432
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=28.86 E-value=2.4e+02 Score=33.94 Aligned_cols=50 Identities=8% Similarity=0.258 Sum_probs=29.2
Q ss_pred HHHHHHH----HHHHHHHHHHhHHHHHHhhccccccccccchhhHHHHHHHHHHHHHHHH
Q 002678 41 KEKFEAD----LKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREME 96 (893)
Q Consensus 41 KEKlE~D----LKKEIKKLQR~RDQIKtW~~s~eIKDK~~~~~~~~~L~e~RKlIE~~ME 96 (893)
|++|+.. ...|.++|+.+=++.+.|+..+|.++ |+.++.+.++++..-|+
T Consensus 538 r~~l~~~~~~~~~~e~~~l~~~l~~~~~wL~~~d~~~------i~~~~~~l~~~~~~~~~ 591 (595)
T TIGR02350 538 EKTLKEAGDKLPAEEKEKIEKAVAELKEALKGEDVEE------IKAKTEELQQALQKLAE 591 (595)
T ss_pred HHHHHHhhccCCHHHHHHHHHHHHHHHHHHhcCCHHH------HHHHHHHHHHHHHHHHH
Confidence 5566421 34556777777888899998875432 33344445544444443
No 433
>COG3945 Uncharacterized conserved protein [Function unknown]
Probab=28.71 E-value=1.4e+02 Score=31.91 Aligned_cols=49 Identities=14% Similarity=0.396 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHHhhhCCCCChhhhhhhhhHHHHHHHhCC
Q 002678 169 THLETSITRHKAHIMKLEL---ILRLLDNDELSPEQVNDVKDLLEDYVERNQ 217 (893)
Q Consensus 169 ~~le~~ierhk~Hi~kLE~---lLRlLdN~~l~pe~V~~IKddieyYve~nq 217 (893)
.-+..+++-|++=+..|.. ++.++.||.|+++.|.+|-|.|..|++..-
T Consensus 8 ~~i~~lvEeH~yIlraL~iLr~~~~~~~~g~i~y~~v~~iidFi~nfaDkcH 59 (189)
T COG3945 8 DSIKLLVEEHTYILRALSILRKALDLIKNGPIDYSDVKEIIDFIRNFADKCH 59 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcc
Confidence 3456677888877666554 456677899999999999999999998654
No 434
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=28.64 E-value=2.3e+02 Score=26.45 Aligned_cols=48 Identities=21% Similarity=0.387 Sum_probs=33.4
Q ss_pred HHHHhhhHHHhHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHH----hHHHHHHhhccccc
Q 002678 11 IDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQR----YRDQIKTWIQSSEI 71 (893)
Q Consensus 11 IDr~lKKV~EGve~Fd~i~eK~~~a~n~nQKEKlE~DLKKEIKKLQR----~RDQIKtW~~s~eI 71 (893)
=+++.+.|.+--+.++.+|+++.. .|.|.+||.. |.+-|.+.++++.|
T Consensus 18 k~~Li~ei~~LQ~sL~~L~~Rve~-------------Vk~E~~kL~~EN~~Lq~YI~nLm~~s~v 69 (80)
T PF10224_consen 18 KEELIQEILELQDSLEALSDRVEE-------------VKEENEKLESENEYLQQYIGNLMSSSSV 69 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 348899999999999999999954 4555555533 44556666655544
No 435
>COG4079 Uncharacterized protein conserved in archaea [Function unknown]
Probab=28.28 E-value=1.7e+02 Score=32.63 Aligned_cols=48 Identities=21% Similarity=0.376 Sum_probs=34.9
Q ss_pred hHHHhHHHHHHHHHHhhcCCCc--hh---------HHHHHHHHHHHHHHHHHhHHHHHH
Q 002678 17 KVQEGVDVFDSIWNKVYDTDNA--NQ---------KEKFEADLKKEIKKLQRYRDQIKT 64 (893)
Q Consensus 17 KV~EGve~Fd~i~eK~~~a~n~--nQ---------KEKlE~DLKKEIKKLQR~RDQIKt 64 (893)
+++.-++.|+++++++.+-+.. .+ -++.+--+||.|.-||++|.|++.
T Consensus 147 ~lqd~~dal~elfe~vss~tpsVskeydiy~vs~~~d~~~rl~kkDie~L~k~R~~L~~ 205 (293)
T COG4079 147 KLQDAVDALMELFETVSSKTPSVSKEYDIYQVSSNVDPVLRLVKKDIETLRKHRRRLAE 205 (293)
T ss_pred CHHHHHHHHHHHHHHhhcCCCcccceeEEEEecCCcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788899999999998743321 11 223667788999999999988763
No 436
>cd07672 F-BAR_PSTPIP2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 2. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 2 (PSTPIP2), also known as Macrophage Actin-associated tYrosine Phosphorylated protein (MAYP), is mostly expressed in hematopoietic cells but is also expressed in the brain. It is involved in regulating cell adhesion and motility. Mutations in the gene encoding murine PSTPIP2 can cause autoinflammatory disorders such as chronic multifocal osteomyelitis and macrophage autoinflammatory disease. PSTPIP2 contains an N-terminal F-BAR domain and lacks the PEST motifs and SH3 domain that are found in PSTPIP1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They ca
Probab=28.27 E-value=5.4e+02 Score=27.98 Aligned_cols=13 Identities=23% Similarity=0.148 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHH
Q 002678 84 LVDARKLIEREME 96 (893)
Q Consensus 84 L~e~RKlIE~~ME 96 (893)
|.+.|..-|..|.
T Consensus 184 l~~~~~~w~~~~~ 196 (240)
T cd07672 184 LDKIREDWQKEHV 196 (240)
T ss_pred HHHHHHHHHHHHH
Confidence 3334444444443
No 437
>KOG3771 consensus Amphiphysin [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.10 E-value=1.1e+03 Score=28.43 Aligned_cols=28 Identities=18% Similarity=0.316 Sum_probs=16.7
Q ss_pred cchhhhHHHHhhhHHHhH--------HHHHHHHHHh
Q 002678 5 RKLQGEIDRVLKKVQEGV--------DVFDSIWNKV 32 (893)
Q Consensus 5 RKLQ~EIDr~lKKV~EGv--------e~Fd~i~eK~ 32 (893)
.-+|+.|-|.=-||...+ +.||+.+.++
T Consensus 4 k~~kKa~sRa~ekvlqk~g~~~~TkD~~FE~~~~~f 39 (460)
T KOG3771|consen 4 KGVQKALNRAPEKVLQKLGKVDETKDEQFEQEERNF 39 (460)
T ss_pred hhhHHHhccccHHHHhhcCCcccccchHHHHHHHHH
Confidence 445666665555555554 5677766666
No 438
>PF09548 Spore_III_AB: Stage III sporulation protein AB (spore_III_AB); InterPro: IPR014198 This entry represents the stage III sporulation protein AB, which is encoded in a spore formation operon: spoIIIAABCDEFGH that is under sigma G regulation []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=27.89 E-value=3.3e+02 Score=27.83 Aligned_cols=30 Identities=27% Similarity=0.628 Sum_probs=24.6
Q ss_pred ccchhhhHHHHhhhHHHhHH-----HHHHHHHHhh
Q 002678 4 SRKLQGEIDRVLKKVQEGVD-----VFDSIWNKVY 33 (893)
Q Consensus 4 ~RKLQ~EIDr~lKKV~EGve-----~Fd~i~eK~~ 33 (893)
.++....+...|.++.+.++ .|.++|++-.
T Consensus 59 ~~~~~~~~~~~f~~~a~~L~~~~~~~~~~~w~~~~ 93 (170)
T PF09548_consen 59 SRRSEGPIGEFFERVAERLEKNEGESFAEAWEEAV 93 (170)
T ss_pred HhcccchHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 46778899999999998887 7889998653
No 439
>cd04787 HTH_HMRTR_unk Helix-Turn-Helix DNA binding domain of putative Heavy Metal Resistance transcription regulators. Putative helix-turn-helix (HTH) heavy metal resistance transcription regulators (HMRTR), unknown subgroup. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to heavy metal stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules, such as, metal ions, drugs, and organic substrates. This subgroup lacks one of the c
Probab=27.72 E-value=1.1e+02 Score=29.96 Aligned_cols=22 Identities=27% Similarity=0.504 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHhHHHHHHhh
Q 002678 45 EADLKKEIKKLQRYRDQIKTWI 66 (893)
Q Consensus 45 E~DLKKEIKKLQR~RDQIKtW~ 66 (893)
..+|.++|..||++++.|..++
T Consensus 88 ~~~l~~~i~~l~~~~~~l~~~~ 109 (133)
T cd04787 88 LAETERRIKELLKLRDRMQQAV 109 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888888888888776544
No 440
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=27.69 E-value=1.2e+02 Score=32.49 Aligned_cols=88 Identities=24% Similarity=0.424 Sum_probs=56.8
Q ss_pred hHHHHHHH---HHHHHHHHHHhHHHHHHhhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccC
Q 002678 40 QKEKFEAD---LKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLG 116 (893)
Q Consensus 40 QKEKlE~D---LKKEIKKLQR~RDQIKtW~~s~eIKDK~~~~~~~~~L~e~RKlIE~~MErFK~vEKesKtKafSkEGL~ 116 (893)
||+.++.+ |++||.-|+.+.++++..+.+ +...+..++++++..+..+++
T Consensus 50 e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~---------------q~~el~~L~~qi~~~~~~~~~------------ 102 (251)
T PF11932_consen 50 EKQELLAEYRQLEREIENLEVYNEQLERQVAS---------------QEQELASLEQQIEQIEETRQE------------ 102 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHH------------
Confidence 45555554 478888888888888776653 455556667777777777643
Q ss_pred CCCCCCchHHhHHHHHHHHHHHHHHHHHHHHH---HHHHHhhhhcccCCCCchhHHHHHHHHHHH
Q 002678 117 QQPKTDPKEKAKSETRDWLNNLVSELESQIDS---FEAELEGLTVKKGKTRPPRLTHLETSITRH 178 (893)
Q Consensus 117 ~~~k~DP~ekek~E~~~wL~~~IdeL~~QiE~---~EaEiE~Ls~KK~K~~~~r~~~le~~ierh 178 (893)
..-+|..+|+.|+..|+. |-.+ .+..|++.|+..+.+-
T Consensus 103 --------------l~p~m~~m~~~L~~~v~~d~Pf~~~----------eR~~Rl~~L~~~l~~~ 143 (251)
T PF11932_consen 103 --------------LVPLMEQMIDELEQFVELDLPFLLE----------ERQERLARLRAMLDDA 143 (251)
T ss_pred --------------HHHHHHHHHHHHHHHHhcCCCCChH----------HHHHHHHHHHHhhhcc
Confidence 344788888888887761 1111 1235777777777553
No 441
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=27.57 E-value=1.4e+02 Score=26.55 Aligned_cols=20 Identities=45% Similarity=0.556 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHhhhh
Q 002678 138 LVSELESQIDSFEAELEGLT 157 (893)
Q Consensus 138 ~IdeL~~QiE~~EaEiE~Ls 157 (893)
.|++|+..|..|++||+.+.
T Consensus 22 Sv~EL~~RIa~L~aEI~R~~ 41 (59)
T PF06698_consen 22 SVEELEERIALLEAEIARLE 41 (59)
T ss_pred CHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999998874
No 442
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=27.55 E-value=6.8e+02 Score=31.89 Aligned_cols=134 Identities=19% Similarity=0.167 Sum_probs=69.6
Q ss_pred hHHHHhhhHHHhHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhHHHHHHhhccc--cccccccchhhHHHHHHH
Q 002678 10 EIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSS--EIKDKKVSASYEQALVDA 87 (893)
Q Consensus 10 EIDr~lKKV~EGve~Fd~i~eK~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~--eIKDK~~~~~~~~~L~e~ 87 (893)
|-|.+++|..|-|....+--+|+...- .-||..|--+..-|+|+|-.-.-.|...++. ++.+ |.+.
T Consensus 485 e~etl~~K~ge~i~~L~sE~~~lk~il--~~Kee~Ek~~~E~I~k~~ae~~rq~~~~~~sr~~~~~----------le~~ 552 (961)
T KOG4673|consen 485 EAETLEEKKGELITKLQSEENKLKSIL--RDKEETEKLLQETIEKHQAELTRQKDYYSNSRALAAA----------LEAQ 552 (961)
T ss_pred hhhHHHHHhhhHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH----------HHHH
Confidence 445556666666666666555554321 1256666666677777776655555555552 2222 2222
Q ss_pred HHHHHHHHH-HHHHHHhhhccccccccccCCC------------CCCCchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002678 88 RKLIEREME-RFKICEKETKTKAFSKEGLGQQ------------PKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELE 154 (893)
Q Consensus 88 RKlIE~~ME-rFK~vEKesKtKafSkEGL~~~------------~k~DP~ekek~E~~~wL~~~IdeL~~QiE~~EaEiE 154 (893)
-..|+.... -++++-|+...|+ +.+... .++.-+|.....-.++|..-|.+|.+.++..|.-.|
T Consensus 553 ~~a~qat~d~a~~Dlqk~nrlkQ---dear~~~~~lvqqv~dLR~~L~~~Eq~aarrEd~~R~Ei~~LqrRlqaaE~R~e 629 (961)
T KOG4673|consen 553 ALAEQATNDEARSDLQKENRLKQ---DEARERESMLVQQVEDLRQTLSKKEQQAARREDMFRGEIEDLQRRLQAAERRCE 629 (961)
T ss_pred HHHHHHhhhhhhhhHHHHhhhhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222221 2333445555551 111100 011112333333457888888999888888888888
Q ss_pred hhhc
Q 002678 155 GLTV 158 (893)
Q Consensus 155 ~Ls~ 158 (893)
.|..
T Consensus 630 el~q 633 (961)
T KOG4673|consen 630 ELIQ 633 (961)
T ss_pred HHHh
Confidence 7754
No 443
>PRK12705 hypothetical protein; Provisional
Probab=27.40 E-value=6e+02 Score=30.91 Aligned_cols=26 Identities=12% Similarity=0.331 Sum_probs=16.7
Q ss_pred HHhhhCCCCChhhhhhhhhHHHHHHH
Q 002678 189 LRLLDNDELSPEQVNDVKDLLEDYVE 214 (893)
Q Consensus 189 LRlLdN~~l~pe~V~~IKddieyYve 214 (893)
=++|..|.+.|..|.++=..+...++
T Consensus 259 ~~Li~dgri~p~rIeevv~~~~~~~~ 284 (508)
T PRK12705 259 EKLLADGRIHPARIEEYVQKANEEFK 284 (508)
T ss_pred HHHHhcCCCChHHHHHHHHHHHHHHH
Confidence 46677777777777776555555443
No 444
>KOG2685 consensus Cystoskeletal protein Tektin [Cytoskeleton]
Probab=27.31 E-value=1.1e+03 Score=28.13 Aligned_cols=159 Identities=18% Similarity=0.254 Sum_probs=90.2
Q ss_pred CccccchhhhHHHHhhhHHHhHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhHHHHHHhhccccccccccchhh
Q 002678 1 MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASY 80 (893)
Q Consensus 1 Maa~RKLQ~EIDr~lKKV~EGve~Fd~i~eK~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~eIKDK~~~~~~ 80 (893)
|++.++|-..++.+|.+.+.-+ .+|.+.-|--+|+-|+-.|+-|+-+++=+++
T Consensus 244 r~~S~~LR~~l~~~l~~tan~l---------------r~Q~~~ve~af~~ri~etqdar~kL~~ql~k------------ 296 (421)
T KOG2685|consen 244 RAASAALREALDQTLRETANDL---------------RTQADAVELAFKKRIRETQDARNKLEWQLAK------------ 296 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------
Confidence 3556777777777777666543 2577888888999999999888887754433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccccccccccC--CCCCCCchH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002678 81 EQALVDARKLIEREMERFKICEKETKTKAFSKEGLG--QQPKTDPKE-KAKSETRDWLNNLVSELESQIDSFEAELEGLT 157 (893)
Q Consensus 81 ~~~L~e~RKlIE~~MErFK~vEKesKtKafSkEGL~--~~~k~DP~e-kek~E~~~wL~~~IdeL~~QiE~~EaEiE~Ls 157 (893)
.| +-|...|..-..+|+..+.|- |=. ++..++-+. ..=.|.|.= -.-..|-..|+.++.-+-.|
T Consensus 297 --~l----eEi~~~e~~I~~le~airdK~----~pLKVAqTRle~Rt~RPnvELCrD--~AQ~~L~~EV~~l~~t~~~L- 363 (421)
T KOG2685|consen 297 --TL----EEIADAENNIEALERAIRDKE----GPLKVAQTRLENRTYRPNVELCRD--QAQYRLVDEVHELDDTVAAL- 363 (421)
T ss_pred --HH----HHHHHHHhHHHHHHHHHhccc----ccHHHHHHHHHHcccCCchHHHHh--HHHHHHHHHHHHHHHHHHHH-
Confidence 22 446677777777888877652 211 111111000 000111100 01122333344444443333
Q ss_pred cccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhCCC-CChhhhhhhh
Q 002678 158 VKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDE-LSPEQVNDVK 206 (893)
Q Consensus 158 ~KK~K~~~~r~~~le~~ierhk~Hi~kLE~lLRlLdN~~-l~pe~V~~IK 206 (893)
..+|++.+..+...-.|-.+||.=|-.-+|.- ||-+..+.++
T Consensus 364 -------~~kL~eA~~~l~~L~~~~~rLe~di~~k~nsL~ID~ekcm~mR 406 (421)
T KOG2685|consen 364 -------KEKLDEAEDSLKLLVNHRARLERDIAIKANSLFIDREKCMLMR 406 (421)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhccHHHHHHHH
Confidence 12345566666666777788888777777766 5666666665
No 445
>PF05781 MRVI1: MRVI1 protein; InterPro: IPR008677 This family consists of mammalian MRVI1 proteins which are related to the lymphoid-restricted membrane protein (JAW1) and the IP3 receptor associated cGMP kinase substrates A and B (IRAGA and IRAGB). The function of MRVI1 is unknown although mutations in the Mrvi1 gene induces myeloid leukaemia by altering the expression of a gene important for myeloid cell growth and/or differentiation so it has been speculated that Mrvi1 is a tumour suppressor gene []. IRAG is very similar in sequence to MRVI1 and is an essential NO/cGKI-dependent regulator of IP3-induced calcium release. Activation of cGKI decreases IP3-stimulated elevations in intracellular calcium, induces smooth muscle relaxation and contributes to the antiproliferative and pro-apoptotic effects of NO/cGMP []. Jaw1 is a member of a class of proteins with COOH-terminal hydrophobic membrane anchors and is structurally similar to proteins involved in vesicle targeting and fusion. This suggests that the function and/or the structure of the ER in lymphocytes may be modified by lymphoid-restricted resident ER proteins [].
Probab=27.24 E-value=5.8e+02 Score=31.34 Aligned_cols=31 Identities=16% Similarity=0.093 Sum_probs=15.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002678 126 KAKSETRDWLNNLVSELESQIDSFEAELEGL 156 (893)
Q Consensus 126 kek~E~~~wL~~~IdeL~~QiE~~EaEiE~L 156 (893)
.+..|+.+-|...|+-|++-+..+-.-.|.|
T Consensus 251 ~e~~e~~~kl~~~l~~l~~~~~rvss~AE~l 281 (538)
T PF05781_consen 251 NESREIIQKLQKSLDVLHQCATRVSSRAEML 281 (538)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555555555555555555544444444
No 446
>PRK03830 small acid-soluble spore protein Tlp; Provisional
Probab=27.21 E-value=2.3e+02 Score=26.33 Aligned_cols=52 Identities=21% Similarity=0.416 Sum_probs=33.3
Q ss_pred cchhhhHHHHhhhHHHhHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhHHHHH
Q 002678 5 RKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIK 63 (893)
Q Consensus 5 RKLQ~EIDr~lKKV~EGve~Fd~i~eK~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQIK 63 (893)
.|||.=|..|+..+.|.-+... ...+..+|+.++.-=++--.-|.-||.-||
T Consensus 12 EkLQ~mi~nTieNi~eAee~l~-------~~~~~~~~~~i~eKN~RR~esi~~~R~EIk 63 (73)
T PRK03830 12 EKLQEMIQNTIENIEEAEETIA-------EEDSEKEKQAIEEKNERREESIDGMRSEIK 63 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HhCCHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 5899999999888888766554 344556666666654444445555554443
No 447
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=27.12 E-value=39 Score=28.61 Aligned_cols=32 Identities=19% Similarity=0.486 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 002678 128 KSETRDWLNNLVSELESQIDSFEAELEGLTVK 159 (893)
Q Consensus 128 k~E~~~wL~~~IdeL~~QiE~~EaEiE~Ls~K 159 (893)
+.||.+-|+..-|.++..||.++.+|+.|..|
T Consensus 3 ~~EAkelLqe~~d~IEqkiedid~qIaeLe~K 34 (46)
T PF08946_consen 3 RAEAKELLQEHYDNIEQKIEDIDEQIAELEAK 34 (46)
T ss_dssp ------------THHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHH
Confidence 46777788888888888888888888777544
No 448
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=26.85 E-value=8.5e+02 Score=30.24 Aligned_cols=43 Identities=30% Similarity=0.392 Sum_probs=23.2
Q ss_pred cccccchhhHHHHHHHHHHHHH---HHHHHHHHHhhhccccccccccCC
Q 002678 72 KDKKVSASYEQALVDARKLIER---EMERFKICEKETKTKAFSKEGLGQ 117 (893)
Q Consensus 72 KDK~~~~~~~~~L~e~RKlIE~---~MErFK~vEKesKtKafSkEGL~~ 117 (893)
|+|+ +.|+++|.....-||. +.|+-|.-..+-| |.--++|+..
T Consensus 286 ~~k~--~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk-~~Ie~Q~iS~ 331 (581)
T KOG0995|consen 286 KSKK--QHMEKKLEMLKSEIEEKEEEIEKLQKENDELK-KQIELQGISG 331 (581)
T ss_pred Hhhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCCCH
Confidence 4444 6677777666555554 5555555555554 3344556553
No 449
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=26.78 E-value=1e+03 Score=31.40 Aligned_cols=32 Identities=44% Similarity=0.561 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHhH-HHHHHhhccccccccc
Q 002678 41 KEKFEADLKKEIKKLQRYR-DQIKTWIQSSEIKDKK 75 (893)
Q Consensus 41 KEKlE~DLKKEIKKLQR~R-DQIKtW~~s~eIKDK~ 75 (893)
||-+|.+-|.=-|||++-| +-||. .--||||.
T Consensus 1084 K~~~e~e~kElk~~l~kkr~e~ik~---~~~~kdK~ 1116 (1189)
T KOG1265|consen 1084 KESLEKETKELKKKLDKKRMEDIKV---DKVIKDKA 1116 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhh---ccccccHH
Confidence 4444444333333344332 34444 33444554
No 450
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=26.71 E-value=2.7e+02 Score=26.20 Aligned_cols=33 Identities=18% Similarity=0.231 Sum_probs=26.7
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002678 125 EKAKSETRDWLNNLVSELESQIDSFEAELEGLT 157 (893)
Q Consensus 125 ekek~E~~~wL~~~IdeL~~QiE~~EaEiE~Ls 157 (893)
=+...|++.-|+-=|++|+.+...+..|++.+.
T Consensus 13 IqqAvdtI~LLqmEieELKekn~~L~~e~~~~~ 45 (79)
T PRK15422 13 VQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQ 45 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888888889999999999988888764
No 451
>TIGR01280 xseB exodeoxyribonuclease VII, small subunit. This protein is the small subunit for exodeoxyribonuclease VII. Exodeoxyribonuclease VII is made of a complex of four small subunits to one large subunit. The complex degrades single-stranded DNA into large acid-insoluble oligonucleotides. These nucleotides are then degraded further into acid-soluble oligonucleotides.
Probab=26.58 E-value=86 Score=27.96 Aligned_cols=37 Identities=19% Similarity=0.226 Sum_probs=27.8
Q ss_pred HHHHHHHHHHhhhCCCCChhh-hhhhhhHHHHHHHhCC
Q 002678 181 HIMKLELILRLLDNDELSPEQ-VNDVKDLLEDYVERNQ 217 (893)
Q Consensus 181 Hi~kLE~lLRlLdN~~l~pe~-V~~IKddieyYve~nq 217 (893)
-+.+||.|++.|+++.|+-|+ +...++-++.+-.+++
T Consensus 6 ~l~~Le~Iv~~LE~~~l~Leesl~lyeeG~~L~k~c~~ 43 (67)
T TIGR01280 6 ALSELEQIVQKLESGDLALEEALNLFERGMALARRCEK 43 (67)
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999999999555 4457777776665544
No 452
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.53 E-value=9.6e+02 Score=29.95 Aligned_cols=54 Identities=26% Similarity=0.395 Sum_probs=31.9
Q ss_pred cchhhhHHHHhhhHHHhHHHHHHHHHHhhcCCCch--hHHHHHHHHHHHHHHHHHhHHHHHHhh
Q 002678 5 RKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNAN--QKEKFEADLKKEIKKLQRYRDQIKTWI 66 (893)
Q Consensus 5 RKLQ~EIDr~lKKV~EGve~Fd~i~eK~~~a~n~n--QKEKlE~DLKKEIKKLQR~RDQIKtW~ 66 (893)
-||++||+|+-++..+-- .+|++.++-.= -+|| .|||+....|+-..|-+++=+
T Consensus 11 e~lr~eierLT~el~q~t------~e~~qaAeyGL~lLeeK--~~Lkqq~eEleaeyd~~R~El 66 (772)
T KOG0999|consen 11 EKLRQEIERLTEELEQTT------EEKIQAAEYGLELLEEK--EDLKQQLEELEAEYDLARTEL 66 (772)
T ss_pred HHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 478999999887766532 23333332111 1222 378888888887766666533
No 453
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=26.51 E-value=1.4e+03 Score=28.92 Aligned_cols=22 Identities=23% Similarity=0.187 Sum_probs=17.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 002678 80 YEQALVDARKLIEREMERFKIC 101 (893)
Q Consensus 80 ~~~~L~e~RKlIE~~MErFK~v 101 (893)
....|.+.|+.-.++|-.||+|
T Consensus 108 l~~~le~lr~qk~eR~~ef~el 129 (660)
T KOG4302|consen 108 LKPYLEGLRKQKDERRAEFKEL 129 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4456778888888899999875
No 454
>COG0249 MutS Mismatch repair ATPase (MutS family) [DNA replication, recombination, and repair]
Probab=26.45 E-value=1.2e+03 Score=30.16 Aligned_cols=164 Identities=17% Similarity=0.240 Sum_probs=85.8
Q ss_pred HHhHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhHHHHHHhhccc---cccccccchhhHHHHHHHHHHHHHHH
Q 002678 19 QEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSS---EIKDKKVSASYEQALVDARKLIEREM 95 (893)
Q Consensus 19 ~EGve~Fd~i~eK~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~---eIKDK~~~~~~~~~L~e~RKlIE~~M 95 (893)
..+++..-+|++-+........-.++..+++ .+.-|-.+.+.|..|+... .|+|--...-|-..|.+.|.+++..=
T Consensus 366 ~~~l~~~~~i~~~l~~~~~~~~l~~~~~~i~-~~~~~~e~~~ll~~~i~~~~~~~~~~~ii~~g~~~eLd~lr~~~~~~~ 444 (843)
T COG0249 366 RDSLEKIPEIFKLLSSLKSESDLLLLLEDIE-SLDYLAELLELLETAINEDPPLAVRDGIIKEGYNIELDELRDLLNNAK 444 (843)
T ss_pred HHHHHHHHHHHHHHhccccchhhhHHhhhhh-ccccHHHHHHHHHHHhhhcchhhcchhHHhcchhHHHHHHHHHHHHHH
Confidence 4667777777777776665554444444443 3332335666677776655 33331133457778999999888665
Q ss_pred HHHHHHHhhh---------cccccccccc-C----CCCCCCchH----HhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002678 96 ERFKICEKET---------KTKAFSKEGL-G----QQPKTDPKE----KAKSETRDWLNNLVSELESQIDSFEAELEGLT 157 (893)
Q Consensus 96 ErFK~vEKes---------KtKafSkEGL-~----~~~k~DP~e----kek~E~~~wL~~~IdeL~~QiE~~EaEiE~Ls 157 (893)
+-...+|.+- |.+.-..-|. . ...+..|.. +....+..|...-+.+++..+...+..+-.+
T Consensus 445 ~~i~~le~~~r~~~gi~slki~~n~v~Gy~ievt~~~~~~~p~~~ir~qt~kn~~rf~t~el~~~e~~i~~a~~~i~~l- 523 (843)
T COG0249 445 EWIAKLELEERERTGIKSLKIKYNKVYGYYIEVTKSNAKLVPDDYIRRQTLKNAERFTTPELKELEEKLLDAEEKILAL- 523 (843)
T ss_pred HHHHHHHHHHHHhcCCchhhhhhhccceeEEEechhccccCchHHHHHHHHhcceEecCHHHHHHHHHHHHHHHHHHHH-
Confidence 5556666552 2233333331 1 111223321 1112233344444444444444333333222
Q ss_pred cccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002678 158 VKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLD 193 (893)
Q Consensus 158 ~KK~K~~~~r~~~le~~ierhk~Hi~kLE~lLRlLd 193 (893)
..+-.....+++.-|+..|..+-+.|.
T Consensus 524 ---------E~~l~~~~~~~i~~~~~~l~~~a~aLa 550 (843)
T COG0249 524 ---------EYELFDELREKILAHINELQALAKALA 550 (843)
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112355666888888888888777663
No 455
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=26.39 E-value=3.7e+02 Score=26.70 Aligned_cols=9 Identities=22% Similarity=0.416 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 002678 137 NLVSELESQ 145 (893)
Q Consensus 137 ~~IdeL~~Q 145 (893)
.+..+|+.+
T Consensus 107 ~a~~~l~~e 115 (141)
T PRK08476 107 AFAKQLANQ 115 (141)
T ss_pred HHHHHHHHH
Confidence 333333333
No 456
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=26.30 E-value=4.9e+02 Score=27.18 Aligned_cols=116 Identities=21% Similarity=0.310 Sum_probs=0.0
Q ss_pred HHHhHHHHHHhhccc--cccccc-----cchhhHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCCCchHHh
Q 002678 55 LQRYRDQIKTWIQSS--EIKDKK-----VSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKA 127 (893)
Q Consensus 55 LQR~RDQIKtW~~s~--eIKDK~-----~~~~~~~~L~e~RKlIE~~MErFK~vEKesKtKafSkEGL~~~~k~DP~eke 127 (893)
+.|+.+.||..++.- .+.|.. ...-++..|.+.|+.+...|-.-|.+|++ .+..
T Consensus 3 f~Rl~~~~~a~~~~~ld~~EDP~~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~-------------------~~~~ 63 (221)
T PF04012_consen 3 FKRLKTLVKANINELLDKAEDPEKMLEQAIRDMEEQLRKARQALARVMANQKRLERK-------------------LDEA 63 (221)
T ss_pred HHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002678 128 KSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLD 193 (893)
Q Consensus 128 k~E~~~wL~~~IdeL~~QiE~~EaEiE~Ls~KK~K~~~~r~~~le~~ierhk~Hi~kLE~lLRlLd 193 (893)
..++..|-.....-|... +-++-.....+++.-...++.++..++...-++.+|+.-|+-|.
T Consensus 64 ~~~~~~~~~~A~~Al~~g----~edLAr~al~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~ 125 (221)
T PF04012_consen 64 EEEAEKWEKQAELALAAG----REDLAREALQRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELE 125 (221)
T ss_pred HHHHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 457
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=26.15 E-value=3.4e+02 Score=29.64 Aligned_cols=64 Identities=20% Similarity=0.272 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhc--ccC--CCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhCC
Q 002678 132 RDWLNNLVSELESQIDSFEAELEGLTV--KKG--KTRPPRLTHLETSITRHKAHIMKLELILRLLDND 195 (893)
Q Consensus 132 ~~wL~~~IdeL~~QiE~~EaEiE~Ls~--KK~--K~~~~r~~~le~~ierhk~Hi~kLE~lLRlLdN~ 195 (893)
...|..+++....-++.+|.+++.+.. .+. ++.-.++-.+++.+-+.+..+.-+..+++.|...
T Consensus 137 ~~il~~ivd~~~~~l~~l~~~~~~le~~l~~~~~~~~l~~l~~l~~~l~~l~~~l~~~~~vl~~l~~~ 204 (318)
T TIGR00383 137 YDIFDAIIDSYFPLLENIEDELEELEDEIISGPTSTLMDEILSLRTELLALRRSLWPLRDVLNFLLRK 204 (318)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 334455555555555555555555522 111 1223577788888877776666666666655443
No 458
>PRK00977 exodeoxyribonuclease VII small subunit; Provisional
Probab=25.94 E-value=86 Score=28.85 Aligned_cols=36 Identities=17% Similarity=0.162 Sum_probs=25.8
Q ss_pred HHHHHHHHHHhhhCCCCChhhh-hhhhhHHHHHHHhC
Q 002678 181 HIMKLELILRLLDNDELSPEQV-NDVKDLLEDYVERN 216 (893)
Q Consensus 181 Hi~kLE~lLRlLdN~~l~pe~V-~~IKddieyYve~n 216 (893)
-+.+||.|++.|++|.|+-|+. ...++-++.+-.++
T Consensus 15 a~~~LEeIv~~LE~~~l~Lees~~lyeeg~~L~k~C~ 51 (80)
T PRK00977 15 ALAELEEIVTRLESGDLPLEESLAAFERGVALARQCQ 51 (80)
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999996554 34666666555444
No 459
>PF07061 Swi5: Swi5; InterPro: IPR010760 This entry represents Swi5 and is involved in meiotic DNA repair synthesis and meiotic joint molecule formation []. It is known to interact with Swi2, Rhp51 and Swi6 [].
Probab=25.81 E-value=1.4e+02 Score=27.86 Aligned_cols=24 Identities=46% Similarity=0.549 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHhhccccccccc
Q 002678 42 EKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKK 75 (893)
Q Consensus 42 EKlE~DLKKEIKKLQR~RDQIKtW~~s~eIKDK~ 75 (893)
+..+..+|+=|++|..| |||||=.
T Consensus 32 ~~~~~~v~~hI~lLheY----------NeiKD~g 55 (83)
T PF07061_consen 32 EDPEKIVKRHIKLLHEY----------NEIKDIG 55 (83)
T ss_pred cCHHHHHHHHHHHHHHH----------hHHHHHH
Confidence 46778899999999988 7899855
No 460
>cd07680 F-BAR_PACSIN1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 1 (PACSIN1). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 1 or Syndapin I is expressed specifically in the brain and is localized in neurites and synaptic boutons. It binds the brain-specific proteins dynamin I, synaptojanin, synapsin I, and neural Wiskott-Aldrich syndrome protein (nWASP), and functions as a link between the cytoskeletal machinery and synaptic vesicle endocytosis. PACSIN 1 interacts with huntingtin and may be implicated in the neuropatholog
Probab=25.79 E-value=9.5e+02 Score=26.69 Aligned_cols=147 Identities=17% Similarity=0.311 Sum_probs=0.0
Q ss_pred HHHhhhHHHhHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHH--------------hHHHHHHhhccccccccccc
Q 002678 12 DRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQR--------------YRDQIKTWIQSSEIKDKKVS 77 (893)
Q Consensus 12 Dr~lKKV~EGve~Fd~i~eK~~~a~n~nQKEKlE~DLKKEIKKLQR--------------~RDQIKtW~~s~eIKDK~~~ 77 (893)
+++.|+|+.|...-++|-+=+. .|-++|.+--|.+.||-| ++.-...-++.-|-=.+.
T Consensus 8 ~~~~kr~~~g~~~~~dl~~f~k------ERA~IE~~Yak~L~~Lakk~~~~~~~~~~~Gtl~~aw~~i~~etE~ia~~-- 79 (258)
T cd07680 8 KRTVKRIDDGHRLCNDLMNCVQ------ERAKIEKAYGQQLTDWAKRWRQLIEKGPQYGSLERAWGAIMTEADKVSEL-- 79 (258)
T ss_pred HHHHHHHHhhHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHHH--
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhccc----cccccccCCCCCCCchHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002678 78 ASYEQALVDARKLIEREMERFKICEKETKTK----AFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDSFEAEL 153 (893)
Q Consensus 78 ~~~~~~L~e~RKlIE~~MErFK~vEKesKtK----afSkEGL~~~~k~DP~ekek~E~~~wL~~~IdeL~~QiE~~EaEi 153 (893)
-..=.-.||++.+|.||..-|+...| +| |++.++.+=+...-..+...+..++.
T Consensus 80 -----H~~la~~L~~e~~e~~r~~qk~~~~k~~~~~~---------------ke~K~~e~~~~KaQK~~~k~~k~v~~-- 137 (258)
T cd07680 80 -----HQEVKNNLLNEDLEKVKNWQKDAYHKQIMGGF---------------KETKEAEDGFRKAQKPWAKKMKELEA-- 137 (258)
T ss_pred -----HHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhh---------------HHHHHHHHHHHHHHhHHHHHHHHHHH--
Q ss_pred hhhhcccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhh------CCCCChhhhhhhhhHHH
Q 002678 154 EGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLD------NDELSPEQVNDVKDLLE 210 (893)
Q Consensus 154 E~Ls~KK~K~~~~r~~~le~~ierhk~Hi~kLE~lLRlLd------N~~l~pe~V~~IKddie 210 (893)
.|-+||..+.|.=.-+.. +-.+.+++|+.+++-++
T Consensus 138 ----------------------sKk~Ye~~Cke~~~A~~~~~~a~~d~~~s~~q~eK~~~k~~ 178 (258)
T cd07680 138 ----------------------AKKAYHLACKEEKLAMTREANSKAEQSVTPEQQKKLQDKVD 178 (258)
T ss_pred ----------------------HHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHHHHHH
No 461
>cd01108 HTH_CueR Helix-Turn-Helix DNA binding domain of CueR-like transcription regulators. Helix-turn-helix (HTH) transcription regulators CueR and ActP, copper efflux regulators. In Bacillus subtilis, copper induced CueR regulates the copZA operon, preventing copper toxicity. In Rhizobium leguminosarum, ActP controls copper homeostasis; it detects cytoplasmic copper stress and activates transcription in response to increasing copper concentrations. These proteins are comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain winged HTH motifs that mediate DNA binding, while the C-terminal domains have two conserved cysteines that define a monovalent copper ion binding site. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements
Probab=25.75 E-value=1.3e+02 Score=29.13 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHhHHHHHHhhc
Q 002678 45 EADLKKEIKKLQRYRDQIKTWIQ 67 (893)
Q Consensus 45 E~DLKKEIKKLQR~RDQIKtW~~ 67 (893)
..+|.++|..||++++.|+.++.
T Consensus 88 ~~~l~~~i~~L~~~~~~l~~~~~ 110 (127)
T cd01108 88 IAELERKIAELQAMRRTLQQLAD 110 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788999999999999988875
No 462
>PF04791 LMBR1: LMBR1-like membrane protein; InterPro: IPR006876 This group of uncharacterised proteins have a conserved C-terminal region which is found in LMBR1 and in the lipocalin-1 receptor. LMBR1 was thought to play a role in preaxial polydactyly, but recent evidence now suggests this not to be the case [].
Probab=25.64 E-value=2.4e+02 Score=32.52 Aligned_cols=25 Identities=16% Similarity=0.323 Sum_probs=15.4
Q ss_pred ccchhhhHHHHhhhHHHhHHHHHHH
Q 002678 4 SRKLQGEIDRVLKKVQEGVDVFDSI 28 (893)
Q Consensus 4 ~RKLQ~EIDr~lKKV~EGve~Fd~i 28 (893)
.+|+..|..+.-.+++|=++..+.+
T Consensus 198 ~~~~~~~~~~~~~~l~~~~~~~~~~ 222 (471)
T PF04791_consen 198 AAKLEDEAAEAKEKLDDIIEKLRRL 222 (471)
T ss_pred hhhhcchhHHHHHHHHHHHHHHHHH
Confidence 3566666666666666666655555
No 463
>cd01109 HTH_YyaN Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB. Putative helix-turn-helix (HTH) MerR-like transcription regulators of Bacillus subtilis, YyaN and YraB, and related proteins; N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=25.63 E-value=1.5e+02 Score=28.05 Aligned_cols=21 Identities=24% Similarity=0.295 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHhHHHHHHhh
Q 002678 46 ADLKKEIKKLQRYRDQIKTWI 66 (893)
Q Consensus 46 ~DLKKEIKKLQR~RDQIKtW~ 66 (893)
..|..+|+.|++.++.|..++
T Consensus 89 ~~l~~~i~~l~~~~~~l~~~~ 109 (113)
T cd01109 89 EELEEQIAELQETLAYLDYKI 109 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777776655
No 464
>PLN03188 kinesin-12 family protein; Provisional
Probab=25.53 E-value=1.6e+02 Score=39.16 Aligned_cols=33 Identities=18% Similarity=0.168 Sum_probs=23.5
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002678 124 KEKAKSETRDWLNNLVSELESQIDSFEAELEGL 156 (893)
Q Consensus 124 ~ekek~E~~~wL~~~IdeL~~QiE~~EaEiE~L 156 (893)
+|++..+.|.=--.-|.+|++.|.++..|-|..
T Consensus 878 re~~le~~c~~qa~~i~ql~~lv~qyk~e~~~~ 910 (1320)
T PLN03188 878 REMALEEFCTKQASEITQLNRLVQQYKHERECN 910 (1320)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 355555655555567888888888888887765
No 465
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=25.47 E-value=4e+02 Score=33.38 Aligned_cols=130 Identities=22% Similarity=0.344 Sum_probs=0.0
Q ss_pred ccccchhhhHHHHhhhHHHhHHHHHHHHHHhhcCCCchhHHHHHHHHHHH----------------HHHHHHhHHHHHHh
Q 002678 2 GASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKE----------------IKKLQRYRDQIKTW 65 (893)
Q Consensus 2 aa~RKLQ~EIDr~lKKV~EGve~Fd~i~eK~~~a~n~nQKEKlE~DLKKE----------------IKKLQR~RDQIKtW 65 (893)
.+.|.|-.+++.++.=+.||-++|..+.+-+++.++.= -+||.-++-. +.-|.+-=.|+..
T Consensus 29 ~~~~a~~~~~~qi~~Wi~k~k~~l~~L~~~l~~ID~ai--~~~l~lIe~~v~~ie~~q~r~di~~~~~dl~e~vsqm~~- 105 (683)
T PF08580_consen 29 NAVKALSGAAEQILDWIQKAKDVLYGLREGLEEIDSAI--SRFLDLIEVYVSAIEDLQLREDIANSLFDLIEEVSQMEL- 105 (683)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH--HHHHHHHHhhccccccccccccccccHHHHHHHHHHHHH-
Q ss_pred hccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCCCchHHhHHHHHHHHHHHHHHHHHH
Q 002678 66 IQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQ 145 (893)
Q Consensus 66 ~~s~eIKDK~~~~~~~~~L~e~RKlIE~~MErFK~vEKesKtKafSkEGL~~~~k~DP~ekek~E~~~wL~~~IdeL~~Q 145 (893)
+||- .|.-.++.+|.+||= .+-.+++|+.|...
T Consensus 106 ----~vK~---------~L~~vK~qveiAmE~----------------------------------~EL~~~vlg~l~~E 138 (683)
T PF08580_consen 106 ----DVKK---------TLISVKKQVEIAMEW----------------------------------EELWNDVLGDLDNE 138 (683)
T ss_pred ----HHHH---------HHHHHHHHHHHHHhH----------------------------------HHHHHHHHHHHHHH
Q ss_pred HHHHHHHHhhhhcccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002678 146 IDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLL 192 (893)
Q Consensus 146 iE~~EaEiE~Ls~KK~K~~~~r~~~le~~ierhk~Hi~kLE~lLRlL 192 (893)
||.+-..+=.+..+|-+.-- ||..-+..||.|+..+
T Consensus 139 Ie~~~~~vfemeE~R~~Sp~-----------~~~lp~~~Le~Ive~~ 174 (683)
T PF08580_consen 139 IEECIRLVFEMEEKRHSSPV-----------RHGLPIFELETIVEEM 174 (683)
T ss_pred HHHHHHHHHHHHHHHccCCc-----------ccCCCcccHHHHHHhc
No 466
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=25.47 E-value=2.9e+02 Score=33.61 Aligned_cols=21 Identities=14% Similarity=0.284 Sum_probs=15.5
Q ss_pred HHHHHHHHhHHHHHHhhcccc
Q 002678 50 KEIKKLQRYRDQIKTWIQSSE 70 (893)
Q Consensus 50 KEIKKLQR~RDQIKtW~~s~e 70 (893)
.|.++|+..=++.+.|+..++
T Consensus 553 ~e~~~i~~~l~~~~~wL~~~~ 573 (627)
T PRK00290 553 DEKEKIEAAIKELKEALKGED 573 (627)
T ss_pred HHHHHHHHHHHHHHHHHhcCC
Confidence 445677777788889998763
No 467
>PHA03247 large tegument protein UL36; Provisional
Probab=25.47 E-value=7.6e+02 Score=35.98 Aligned_cols=20 Identities=15% Similarity=0.142 Sum_probs=12.1
Q ss_pred HHHHHHHHHHhhcccccccc
Q 002678 814 YQQYLAAKELKKQSWRYHRK 833 (893)
Q Consensus 814 ~~Ql~AA~EL~~RgWRYHKk 833 (893)
..=+..|.+.+.|.-|+-++
T Consensus 3111 lAlLi~ACr~i~r~lr~TR~ 3130 (3151)
T PHA03247 3111 LAVLIEACRRIRRQLRRTRH 3130 (3151)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34456677777776666443
No 468
>PF01496 V_ATPase_I: V-type ATPase 116kDa subunit family ; InterPro: IPR002490 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents the 116kDa subunit (or subunit a) and subunit I found in the V0 or A0 complex of V- or A-ATPases, respectively. The 116kDa subunit is a transmembrane glycoprotein required for the assembly and proton transport activity of the ATPase complex. Several isoforms of the 116kDa subunit exist, providing a potential role in the differential targeting and regulation of the V-ATPase for specific organelles []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 2RPW_X 2NVJ_A 2JTW_A 3RRK_A.
Probab=25.47 E-value=2.8e+02 Score=34.54 Aligned_cols=98 Identities=18% Similarity=0.345 Sum_probs=50.2
Q ss_pred ccchhhhHHHHhhhHHHhHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhHHHHHHhhccccccccccchhhHHH
Q 002678 4 SRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQA 83 (893)
Q Consensus 4 ~RKLQ~EIDr~lKKV~EGve~Fd~i~eK~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~eIKDK~~~~~~~~~ 83 (893)
.+++..+|+++++.. |...|+ +... ....+..-.+|+++|+.|++-.++++.-+..- . ..+...
T Consensus 199 ~~~~~~kv~~il~~~--~f~~~~--~p~~-----~~~p~e~~~~l~~~i~~l~~~~~~~~~~l~~~--~-----~~~~~~ 262 (759)
T PF01496_consen 199 GKELEEKVKKILRSF--GFERYD--LPED-----EGTPEEAIKELEEEIEELEKELEELEEELKKL--L-----EKYAEE 262 (759)
T ss_dssp EGGGHHHHHHHHHTT--T--B------GG-----GGG-HHHHHHHHHHHHHHHHHHHHHHHHHHHH--H-----HHHHHH
T ss_pred chhhHHHHHHHhhcc--CceecC--CCCc-----cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H-----HHHHHH
Confidence 356677788887776 444443 1111 11233444455555555555444444433310 0 012236
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccc--cccccccCC
Q 002678 84 LVDARKLIEREMERFKICEKETKTK--AFSKEGLGQ 117 (893)
Q Consensus 84 L~e~RKlIE~~MErFK~vEKesKtK--afSkEGL~~ 117 (893)
|..++..++.+-++|+.+.+-..++ .|-=+|-..
T Consensus 263 l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~GWvP 298 (759)
T PF01496_consen 263 LEAWYEYLRKEKEIYEALNKFASTETNVFILEGWVP 298 (759)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT---SEEEEEEE-
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccccEEEEEEecc
Confidence 7777777777778888877776665 566666653
No 469
>TIGR02044 CueR Cu(I)-responsive transcriptional regulator. This model represents the copper-, silver- and gold- (I) responsive transcriptional activator of the gamma proteobacterial copper efflux system. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X7-Cys. This family also lacks a conserved cysteine at the N-terminal end of the dimerization helix which is required for the binding of divalent metals such as zinc; here it is replaced by a serine residue.
Probab=25.44 E-value=1.2e+02 Score=29.25 Aligned_cols=26 Identities=31% Similarity=0.509 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhhcc
Q 002678 43 KFEADLKKEIKKLQRYRDQIKTWIQS 68 (893)
Q Consensus 43 KlE~DLKKEIKKLQR~RDQIKtW~~s 68 (893)
+...+|+.+|..|+++|+.|..|+..
T Consensus 86 ~~~~~l~~~i~~L~~~~~~L~~~~~~ 111 (127)
T TIGR02044 86 EKVAEIERKISELQSMRDQLEALAQA 111 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33568999999999999999988864
No 470
>PF10136 SpecificRecomb: Site-specific recombinase; InterPro: IPR011385 This group represents a site-specific recombinase Gcr. Please see the following relevant reference: [].
Probab=25.38 E-value=3.5e+02 Score=33.78 Aligned_cols=89 Identities=19% Similarity=0.245 Sum_probs=54.2
Q ss_pred HhHHHHHHHHHHHH-----------HHHHHHHHHHHHHHhhhhcccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhh-
Q 002678 126 KAKSETRDWLNNLV-----------SELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLD- 193 (893)
Q Consensus 126 kek~E~~~wL~~~I-----------deL~~QiE~~EaEiE~Ls~KK~K~~~~r~~~le~~ierhk~Hi~kLE~lLRlLd- 193 (893)
.-..|+..|+.... ..|+.-+|++...++++..+-.+.. -=-.+-..++|.+-++.|||.||.+|.
T Consensus 188 al~~e~~~~~~~~~~~~~~~~~~d~~~l~vll~qCr~~v~~v~~~~~~~G--~Sv~l~~~L~Rl~Q~L~Ri~~Ll~~l~~ 265 (643)
T PF10136_consen 188 ALQREVEAFLEAYRQQDEDPDSEDLKHLRVLLDQCREQVDRVRKHLEKYG--VSVSLVFLLERLRQQLDRIELLLDLLVD 265 (643)
T ss_pred HHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHHHHHhccccC--eeHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 34455666665543 4456667888888887732211111 113577789999999999999999999
Q ss_pred -CCCCChhhhhhhhhHHHHHHHhC
Q 002678 194 -NDELSPEQVNDVKDLLEDYVERN 216 (893)
Q Consensus 194 -N~~l~pe~V~~IKddieyYve~n 216 (893)
...-...-+.-+++-|.+--+.|
T Consensus 266 ~~~~~~~~~~~L~~~Lv~~~~~r~ 289 (643)
T PF10136_consen 266 DSPDRRRAIVRLFKELVRAECRRN 289 (643)
T ss_pred cCchhhHHHHHHHHHHHHHHHHhc
Confidence 22233444444555555544433
No 471
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=25.36 E-value=5.1e+02 Score=29.07 Aligned_cols=87 Identities=20% Similarity=0.257 Sum_probs=0.0
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCchh-HHHHHHHHHHHHHHHHHHHHHHHhhhCCCCC-hhh
Q 002678 124 KEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPR-LTHLETSITRHKAHIMKLELILRLLDNDELS-PEQ 201 (893)
Q Consensus 124 ~ekek~E~~~wL~~~IdeL~~QiE~~EaEiE~Ls~KK~K~~~~r-~~~le~~ierhk~Hi~kLE~lLRlLdN~~l~-pe~ 201 (893)
..+...++++||..-|++++.+++..|.++.....+.+=-..+. ...+...+...+-.+..+|.=|..|..---+ --+
T Consensus 164 ~~~~~~~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d~~~~~~~~~~~i~~L~~~l~~~~~~l~~l~~~~~~~~P~ 243 (362)
T TIGR01010 164 NERARKDTIAFAENEVKEAEQRLNATKAELLKYQIKNKVFDPKAQSSAQLSLISTLEGELIRVQAQLAQLRSITPEQNPQ 243 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCc
Q ss_pred hhhhhhHHH
Q 002678 202 VNDVKDLLE 210 (893)
Q Consensus 202 V~~IKddie 210 (893)
|..+++.|+
T Consensus 244 v~~l~~~i~ 252 (362)
T TIGR01010 244 VPSLQARIK 252 (362)
T ss_pred hHHHHHHHH
No 472
>cd07307 BAR The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Mutations in BAR containing proteins have been linked to diseases and their inactivation in cells leads to altered membrane dynamics. A BAR domain with an additional N-terminal amphipathic helix (an N-BAR) can drive membrane curvature. These N-BAR domains are found in amphiphysins and endophilins, among others. BAR domains are also frequently found alongside domains that determine lipid specificity, such as the Pleckstrin Homology (PH) and Phox Homology (PX) domains which are present in beta centaurins (ACAPs and ASAPs) and sorting nexins, respectively. A FES-CIP4 Homology (FCH) domain together with a coiled coil region is called the F-
Probab=25.36 E-value=6e+02 Score=24.25 Aligned_cols=25 Identities=16% Similarity=0.276 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHH-hHHHHHHhhc
Q 002678 43 KFEADLKKEIKKLQR-YRDQIKTWIQ 67 (893)
Q Consensus 43 KlE~DLKKEIKKLQR-~RDQIKtW~~ 67 (893)
+++.-.+..+.+++. +=+.|+.|+.
T Consensus 65 ~l~~~~~~~~~~~~~~v~~pL~~~~~ 90 (194)
T cd07307 65 ELEEFRDQLEQKLENKVIEPLKEYLK 90 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444432 4455666664
No 473
>PF07464 ApoLp-III: Apolipophorin-III precursor (apoLp-III); InterPro: IPR010009 This family consists of several insect apolipoprotein-III sequences. Exchangeable apolipoproteins constitute a functionally important family of proteins that play critical roles in lipid transport and lipoprotein metabolism. Apolipophorin III (apoLp-III) is a prototypical exchangeable apolipoprotein found in many insect species that functions in transport of diacylglycerol (DAG) from the fat body lipid storage depot to flight muscles in the adult life stage [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0005576 extracellular region; PDB: 1EQ1_A.
Probab=25.36 E-value=7.7e+02 Score=25.52 Aligned_cols=111 Identities=24% Similarity=0.332 Sum_probs=69.4
Q ss_pred hhHHHhHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHH-HHHhHHHHHHhhcc--ccccccccchhhHHHHHHHHHHHH
Q 002678 16 KKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKK-LQRYRDQIKTWIQS--SEIKDKKVSASYEQALVDARKLIE 92 (893)
Q Consensus 16 KKV~EGve~Fd~i~eK~~~a~n~nQKEKlE~DLKKEIKK-LQR~RDQIKtW~~s--~eIKDK~~~~~~~~~L~e~RKlIE 92 (893)
++|.|....|..-++++....+. .++.+=||. ..-++++|+.|+.+ .+|||+. ......|.+.|..|+
T Consensus 3 ~~~~e~~~~~~~~~~~~~~~~~~-------~Ev~~aik~~sd~~~~~l~~~~~~l~eeik~~n--~~~~e~l~~~~~kl~ 73 (155)
T PF07464_consen 3 QHAQEFQKEFQEQVNKLLGSQNQ-------QEVVKAIKEQSDSVAQQLQNVSSSLQEEIKDAN--PEAEEALKQLKTKLE 73 (155)
T ss_dssp HHHHHHHHHHHHHHHHHTSS--S-------S-SSHHHHHHHHHHHHHHHHHHHHHHHHHTT-S--STHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhCCCcH-------HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcC--hhHHHHHHHHHHHHH
Confidence 67889999999999999876332 233344443 45567777777765 3777754 455667777888887
Q ss_pred HHHHHHHHHHhhhccccccccccCCCCCCCchH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002678 93 REMERFKICEKETKTKAFSKEGLGQQPKTDPKE-KAKSETRDWLNNLVSELESQIDSFEAELEG 155 (893)
Q Consensus 93 ~~MErFK~vEKesKtKafSkEGL~~~~k~DP~e-kek~E~~~wL~~~IdeL~~QiE~~EaEiE~ 155 (893)
+.-+.++. ..|.- +...+..+=|+..|..|-.+++.+-.+|..
T Consensus 74 et~~~L~k--------------------~~Pev~~qa~~l~e~lQ~~vq~l~~E~qk~~k~v~~ 117 (155)
T PF07464_consen 74 ETAEKLRK--------------------ANPEVEKQANELQEKLQSAVQSLVQESQKLAKEVSE 117 (155)
T ss_dssp HHHHGGGG---------------------SHHHHHT-SSSHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHh--------------------cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76655421 13432 333446666777777777777777777644
No 474
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=25.30 E-value=1.8e+02 Score=27.83 Aligned_cols=67 Identities=22% Similarity=0.296 Sum_probs=42.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccC-CCCchhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002678 127 AKSETRDWLNNLVSELESQIDSFEAELEGLTVKKG-KTRPPRLTHLETSITRHKAHIMKLELILRLLD 193 (893)
Q Consensus 127 ek~E~~~wL~~~IdeL~~QiE~~EaEiE~Ls~KK~-K~~~~r~~~le~~ierhk~Hi~kLE~lLRlLd 193 (893)
++.+..+=|.+.++.+.+.+..+|.+++.|..++- -+=.-++.+++..+..-.-++.-++.++++|=
T Consensus 32 a~~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lLl 99 (106)
T PF10805_consen 32 AKREDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLDLLL 99 (106)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 34444455677788889999999999988843211 00012556666666666677777777776653
No 475
>PRK14066 exodeoxyribonuclease VII small subunit; Provisional
Probab=25.20 E-value=92 Score=28.51 Aligned_cols=37 Identities=19% Similarity=0.281 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHhhhCCCCChhh-hhhhhhHHHHHHHhC
Q 002678 180 AHIMKLELILRLLDNDELSPEQ-VNDVKDLLEDYVERN 216 (893)
Q Consensus 180 ~Hi~kLE~lLRlLdN~~l~pe~-V~~IKddieyYve~n 216 (893)
--+.+||.|++.|++|.|.-|+ +...++-++.+-.++
T Consensus 8 eal~~LE~IV~~LE~g~l~Leesl~lyeeG~~L~k~C~ 45 (75)
T PRK14066 8 TALKKLEEVVKKLEGGELSLDDSLKAFEEGVKHAAFCS 45 (75)
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3467899999999999999554 444565555554443
No 476
>KOG0103 consensus Molecular chaperones HSP105/HSP110/SSE1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=25.12 E-value=7.2e+02 Score=31.56 Aligned_cols=66 Identities=27% Similarity=0.449 Sum_probs=46.3
Q ss_pred HHHHHHHHHH-----HHHHHHHhHHHHHHhhccc-cccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhcccccccc
Q 002678 41 KEKFEADLKK-----EIKKLQRYRDQIKTWIQSS-EIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKE 113 (893)
Q Consensus 41 KEKlE~DLKK-----EIKKLQR~RDQIKtW~~s~-eIKDK~~~~~~~~~L~e~RKlIE~~MErFK~vEKesKtKafSkE 113 (893)
|+||.+.+.+ |--||.+.-+-+-.|+--. |.-.| +.|..+|.|..++.- -.||++.|.. -|+|-+.
T Consensus 586 R~kl~~~y~~f~~~a~~e~~~~~l~~~E~wlyedGed~~k---~~Y~~kl~elk~~g~--~~r~~e~~~r--~k~~d~~ 657 (727)
T KOG0103|consen 586 RDKLSDKYEDFITDAEREKLKKMLTDTEEWLYEDGEDQTK---AVYVAKLEELKKLGD--KKRFDENEER--PKAFDEL 657 (727)
T ss_pred HHHhhhhhhhhcCHHHHHHHHHHHHHHHHHHHhcCcccch---HHHHHHHHHHHhhhh--hhhhhhhhhh--hHHHHHH
Confidence 6777777666 7778899999999999653 22222 468889999988876 6788877654 3444443
No 477
>PRK07737 fliD flagellar capping protein; Validated
Probab=24.93 E-value=1.3e+03 Score=27.86 Aligned_cols=28 Identities=18% Similarity=0.512 Sum_probs=23.5
Q ss_pred hhhhHHHHhhhHHHhHHHHHHHHHHhhc
Q 002678 7 LQGEIDRVLKKVQEGVDVFDSIWNKVYD 34 (893)
Q Consensus 7 LQ~EIDr~lKKV~EGve~Fd~i~eK~~~ 34 (893)
+..+.|.+.++|.+=|+.|+.+.+.+..
T Consensus 266 V~~D~~~~~~~i~~FV~aYN~l~~~i~~ 293 (501)
T PRK07737 266 VATDVDGIFNKIKDFVDKYNELIDKINA 293 (501)
T ss_pred EecChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457899999999999999999888764
No 478
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=24.76 E-value=3.1e+02 Score=33.53 Aligned_cols=13 Identities=31% Similarity=0.317 Sum_probs=9.2
Q ss_pred hhhhHHHHhhhHH
Q 002678 7 LQGEIDRVLKKVQ 19 (893)
Q Consensus 7 LQ~EIDr~lKKV~ 19 (893)
-+.||++.+++..
T Consensus 483 s~~ei~~~~~~~~ 495 (595)
T PRK01433 483 DKTEIDIMLENAY 495 (595)
T ss_pred CHHHHHHHHHHHH
Confidence 4567888877765
No 479
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=24.62 E-value=4e+02 Score=23.28 Aligned_cols=56 Identities=23% Similarity=0.305 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcccC------CCCchhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002678 137 NLVSELESQIDSFEAELEGLTVKKG------KTRPPRLTHLETSITRHKAHIMKLELILRLL 192 (893)
Q Consensus 137 ~~IdeL~~QiE~~EaEiE~Ls~KK~------K~~~~r~~~le~~ierhk~Hi~kLE~lLRlL 192 (893)
.-|..|+.+++.++.+++.+..|=. |...+=++.-+..++...-++.+|+..|..|
T Consensus 4 ~E~~rL~Kel~kl~~~i~~~~~kL~n~~F~~kAP~eVve~er~kl~~~~~~~~~l~~~l~~L 65 (66)
T PF10458_consen 4 AEIERLEKELEKLEKEIERLEKKLSNENFVEKAPEEVVEKEREKLEELEEELEKLEEALEQL 65 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCSTTHHHHS-CCHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3467788889999999888854322 1122334444444455555555555555443
No 480
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=24.62 E-value=1.4e+03 Score=28.32 Aligned_cols=83 Identities=19% Similarity=0.285 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh-----hCCCCChhhhhhh
Q 002678 131 TRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLL-----DNDELSPEQVNDV 205 (893)
Q Consensus 131 ~~~wL~~~IdeL~~QiE~~EaEiE~Ls~KK~K~~~~r~~~le~~ierhk~Hi~kLE~lLRlL-----dN~~l~pe~V~~I 205 (893)
-++-+..++++|+++++.++.++...-.-+-+.+. -+....+++-+-|+..|+.+|.-+ +=...=|+++.++
T Consensus 158 n~~~~Ge~~~~lEk~Le~i~~~l~qf~~lt~~Gd~---ieA~evl~~~ee~~~~L~~~~e~IP~L~~e~~~~lP~ql~~L 234 (570)
T COG4477 158 NRHQYGEAAPELEKKLENIEEELSQFVELTSSGDY---IEAREVLEEAEEHMIALRSIMERIPSLLAELQTELPGQLQDL 234 (570)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHhccCCCh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHH
Confidence 34456678889999999999988776433333331 123335566666666666666532 1222348999999
Q ss_pred hhHHHHHHHhC
Q 002678 206 KDLLEDYVERN 216 (893)
Q Consensus 206 KddieyYve~n 216 (893)
|+-....++.+
T Consensus 235 k~Gyr~m~~~g 245 (570)
T COG4477 235 KAGYRDMKEEG 245 (570)
T ss_pred HHHHHHHHHcc
Confidence 99988888855
No 481
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=24.61 E-value=25 Score=43.19 Aligned_cols=23 Identities=30% Similarity=0.679 Sum_probs=0.0
Q ss_pred ccchhhhHHHHhhhHHHhHHHHHH
Q 002678 4 SRKLQGEIDRVLKKVQEGVDVFDS 27 (893)
Q Consensus 4 ~RKLQ~EIDr~lKKV~EGve~Fd~ 27 (893)
.|+|+.|+ +.|+.+.+-+++..+
T Consensus 266 n~~l~~El-k~Lr~~~~n~elLeE 288 (722)
T PF05557_consen 266 NRRLREEL-KHLRQSQENVELLEE 288 (722)
T ss_dssp ------------------------
T ss_pred HHHHHHHH-HHHHHHHhHHHHHHH
Confidence 45566666 445566666665554
No 482
>cd08915 V_Alix_like Protein-interacting V-domain of mammalian Alix and related domains. This superfamily contains the V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Bro1, and Rim20 all interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. The Alix V-domain contains
Probab=24.57 E-value=1e+03 Score=26.66 Aligned_cols=111 Identities=20% Similarity=0.160 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHH-hh-cc-ccccccccchhhHHHHHHHHHHHHHHH-------HHHHHHHhhhcccccc
Q 002678 42 EKFEADLKKEIKKLQRYRDQIKT-WI-QS-SEIKDKKVSASYEQALVDARKLIEREM-------ERFKICEKETKTKAFS 111 (893)
Q Consensus 42 EKlE~DLKKEIKKLQR~RDQIKt-W~-~s-~eIKDK~~~~~~~~~L~e~RKlIE~~M-------ErFK~vEKesKtKafS 111 (893)
+..+..|..|-+.-.++|.++.+ |- .. ++.. .+.+...+..+|..++.+. ++|+.++...++=.-+
T Consensus 94 ~~~~~~L~~E~~ed~~~R~k~g~~~w~~~~S~~~----~~~l~~~~~k~~~~L~~A~~sD~~l~~~~~~~~~~l~lL~~~ 169 (342)
T cd08915 94 QECEELLEEEAAEDDQLRAKFGTLRWRRPSSDEA----AKELYEKVTKLRGYLEQASNSDNEVLQCYESIDPNLVLLCGG 169 (342)
T ss_pred HHHHHHHHHHHHhhHHHHHHhCcccCCCCChHHH----HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcCC
Confidence 34566788888888999999987 43 22 2211 1235556667777666654 5666666655554444
Q ss_pred ccccCCCC-----CCCchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002678 112 KEGLGQQP-----KTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGL 156 (893)
Q Consensus 112 kEGL~~~~-----k~DP~ekek~E~~~wL~~~IdeL~~QiE~~EaEiE~L 156 (893)
...|...- ..++...+.....+=+-+-++.|..+=+.++.+++..
T Consensus 170 ~~~l~~~~Ps~~~~~~~~~~~~v~~Lr~~l~~l~~lk~eR~~~~~~lk~~ 219 (342)
T cd08915 170 YKELKAFIPSPYPALDPEVSEVVSSLRPLLNEVSELEKERERFISELEIK 219 (342)
T ss_pred hHHHHHhCCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44443211 1222222222222222244566677777777777543
No 483
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=24.53 E-value=8.7e+02 Score=25.81 Aligned_cols=30 Identities=23% Similarity=0.312 Sum_probs=19.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002678 127 AKSETRDWLNNLVSELESQIDSFEAELEGL 156 (893)
Q Consensus 127 ek~E~~~wL~~~IdeL~~QiE~~EaEiE~L 156 (893)
++.+-...|...|+.++++|+....+++.+
T Consensus 67 ~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~ 96 (302)
T PF10186_consen 67 ELRERLERLRERIERLRKRIEQKRERLEEL 96 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455666777777777777776666665
No 484
>cd07681 F-BAR_PACSIN3 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 3 (PACSIN3). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 3 or Syndapin III is expressed ubiquitously and regulates glucose uptake in adipocytes through its role in GLUT1 trafficking. It also modulates the subcellular localization and stimulus-specific function of the cation channel TRPV4. PACSIN 3 contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to
Probab=24.25 E-value=9.7e+02 Score=26.69 Aligned_cols=108 Identities=15% Similarity=0.176 Sum_probs=63.1
Q ss_pred hhhhHHHHhhhHHHhHHHHHHHHHHhhc------------CCCchhHHHHHHHHHHHHHHHHHhHHHHHHhhcccccccc
Q 002678 7 LQGEIDRVLKKVQEGVDVFDSIWNKVYD------------TDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDK 74 (893)
Q Consensus 7 LQ~EIDr~lKKV~EGve~Fd~i~eK~~~------------a~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~eIKDK 74 (893)
+|.=--+.||+|.+-...|+..-++-+. .-++.|.+|+.+-|+|....+++.++.-..=+
T Consensus 124 aqK~w~k~~kk~~~sKk~Y~~~ck~e~~a~~~e~~~k~~~~~~~~q~~K~~~kleK~~~~~~k~~~~Y~~~v-------- 195 (258)
T cd07681 124 AQKPWVKKLKEVESSKKGYHAARKDERTAQTRETHAKADSTVSQEQLRKLQDRVEKCTQEAEKAKEQYEKAL-------- 195 (258)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Confidence 3333334567777766666654433221 22344677888888888777776655443221
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCCCchHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002678 75 KVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDSFEA 151 (893)
Q Consensus 75 ~~~~~~~~~L~e~RKlIE~~MErFK~vEKesKtKafSkEGL~~~~k~DP~ekek~E~~~wL~~~IdeL~~QiE~~Ea 151 (893)
..|..+|..-++.|+.. ||+- --.|++ =.+||.+++..+++-++....
T Consensus 196 -------~~L~~~~~~w~e~m~~~--~d~~-----------------Q~~Eee---Ri~flK~~L~~~~~~l~~~~~ 243 (258)
T cd07681 196 -------EELNRYNPRYMEDMEQA--FEIC-----------------QEAERK---RLCFFKEMLLDLHQHLDLSSS 243 (258)
T ss_pred -------HHHHHhhHHHHHHHHHH--HHHH-----------------HHHHHH---HHHHHHHHHHHHHHHHhhhcc
Confidence 15777888888888752 2221 002333 346888888888887765443
No 485
>KOG4348 consensus Adaptor protein CMS/SETA [Signal transduction mechanisms]
Probab=24.20 E-value=1.1e+02 Score=36.42 Aligned_cols=33 Identities=39% Similarity=0.365 Sum_probs=29.1
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002678 124 KEKAKSETRDWLNNLVSELESQIDSFEAELEGL 156 (893)
Q Consensus 124 ~ekek~E~~~wL~~~IdeL~~QiE~~EaEiE~L 156 (893)
+-|+|+|+.+--++.+|||+.||-.|-.-+|.|
T Consensus 556 e~k~k~e~~~~~k~s~delr~qi~el~~ive~l 588 (627)
T KOG4348|consen 556 EIKAKVETDDVKKNSLDELRAQIIELLCIVEAL 588 (627)
T ss_pred ccccccchhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 348899999999999999999998888888777
No 486
>PF00816 Histone_HNS: H-NS histone family Partial NMR structure.; InterPro: IPR001801 The histone-like nucleoid-structuring (H-NS) protein belongs to a family of bacterial proteins that play a role in the formation of nucleoid structure and affect gene expression under certain conditions [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2LEV_A 1HNS_A 1LR1_B 1HNR_A 1NI8_A 1OV9_A 2JR1_A 3NR7_A 2L93_A 2L92_A.
Probab=24.16 E-value=57 Score=29.95 Aligned_cols=16 Identities=50% Similarity=0.665 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHhhh
Q 002678 141 ELESQIDSFEAELEGL 156 (893)
Q Consensus 141 eL~~QiE~~EaEiE~L 156 (893)
+|..+++.++.+++.+
T Consensus 2 eL~~~~~~l~~~~~~~ 17 (93)
T PF00816_consen 2 ELEAQIKELEKEIEER 17 (93)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH
Confidence 6777777777776654
No 487
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=24.07 E-value=1.1e+03 Score=26.67 Aligned_cols=81 Identities=21% Similarity=0.330 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhCCCC----Chhhhh-
Q 002678 129 SETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDEL----SPEQVN- 203 (893)
Q Consensus 129 ~E~~~wL~~~IdeL~~QiE~~EaEiE~Ls~KK~K~~~~r~~~le~~ierhk~Hi~kLE~lLRlLdN~~l----~pe~V~- 203 (893)
.++..=|+..|..+..+++..+..++.+.. ....|+..|+|.+..+++.+.=|+.|.+=.= +-|.++
T Consensus 161 ~~iE~~l~~ai~~~~~~~~~~~~~l~~l~~--------de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~ 232 (267)
T PF10234_consen 161 NEIEKALKEAIKAVQQQLQQTQQQLNNLAS--------DEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEE 232 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 334444556666666666666666655521 1123566666666666666666666665441 123333
Q ss_pred hhhhHHHHHHHhCC
Q 002678 204 DVKDLLEDYVERNQ 217 (893)
Q Consensus 204 ~IKddieyYve~nq 217 (893)
+++.--+.||+..-
T Consensus 233 EL~~lY~~Y~~kfR 246 (267)
T PF10234_consen 233 ELQKLYEIYVEKFR 246 (267)
T ss_pred HHHHHHHHHHHHHH
Confidence 25555566666543
No 488
>PRK13343 F0F1 ATP synthase subunit alpha; Provisional
Probab=23.98 E-value=6.1e+02 Score=30.79 Aligned_cols=120 Identities=15% Similarity=0.163 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhccccccccccCCCCCCCchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-cccCCCC
Q 002678 86 DARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLT-VKKGKTR 164 (893)
Q Consensus 86 e~RKlIE~~MErFK~vEKesKtKafSkEGL~~~~k~DP~ekek~E~~~wL~~~IdeL~~QiE~~EaEiE~Ls-~KK~K~~ 164 (893)
..-..+-..+-+|+++|.-...-+| +|+..+...+-..-|.+++.+=..+--.+|..+..|. ..+|--+
T Consensus 377 ~~a~~lr~~la~y~e~e~~~~~G~~----------ld~~~~~~i~~~~~i~~~L~Q~~~~~~~~~~~~~~l~~~~~g~~~ 446 (502)
T PRK13343 377 KESGRLRLDYAQFLELEAFTRFGGL----------LDAGTQKQITRGRRLRELLKQPRFSPLSVEEQIALLYALNEGLLD 446 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh----------cCHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCCcc
Confidence 3334445566788888864444333 4665554444333333332221111112333333332 2333222
Q ss_pred chhHHHHHHHHHHHHHHHH-HHHHHHHhhh-CCCCChhhhhhhhhHHHHHHHh
Q 002678 165 PPRLTHLETSITRHKAHIM-KLELILRLLD-NDELSPEQVNDVKDLLEDYVER 215 (893)
Q Consensus 165 ~~r~~~le~~ierhk~Hi~-kLE~lLRlLd-N~~l~pe~V~~IKddieyYve~ 215 (893)
.-.++++..+......|+. +...++..|+ .+.|+.+....|++-|+.|++.
T Consensus 447 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~~l~~~~~~~~~~ 499 (502)
T PRK13343 447 AVPLANIQAFEERLLEKLDARFAALSLALESPRELDEAWLAALEEILREAGER 499 (502)
T ss_pred CCCHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHh
Confidence 2233444444444333332 2334445554 4558888888899999998864
No 489
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=23.92 E-value=6.7e+02 Score=26.56 Aligned_cols=49 Identities=20% Similarity=0.502 Sum_probs=30.3
Q ss_pred HHHhhhHHHh---HHHHHHHHHHhhcCC-------CchhHHHHHHHHHHHHHHHHHhHHHHHH
Q 002678 12 DRVLKKVQEG---VDVFDSIWNKVYDTD-------NANQKEKFEADLKKEIKKLQRYRDQIKT 64 (893)
Q Consensus 12 Dr~lKKV~EG---ve~Fd~i~eK~~~a~-------n~nQKEKlE~DLKKEIKKLQR~RDQIKt 64 (893)
+.+|+-|.|| +..|+++=++|..+. |..=|-+||. +|+-+.|.|++.|.
T Consensus 18 e~vl~~i~eg~tql~afe~~g~~L~rt~aac~fRwNs~vrk~Yee----~I~~AKK~Rke~kr 76 (170)
T PRK13923 18 EVVLRHIREGGTQLKAFEEVGDALKRTAAACGFRWNSVVRKQYQE----QIKLAKKERKELRR 76 (170)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHH----HHHHHHHhhHHHhh
Confidence 4567888888 678888777775332 2333445544 55566666666664
No 490
>PF08376 NIT: Nitrate and nitrite sensing; InterPro: IPR013587 The nitrate and nitrite-sensing (NIT) domain is a (~250 aa) sensor domain found in various receptor components of signal transduction pathways from different bacterial lineages []. The NIT domain is predicted to be all alpha-helical in structure []. Proteins containing a NIT domain belong to one of four known classes of prokaryotic signal transduction proteins: intracellular transcription anti-termination regulators, sensor histidine kinases, methyl-accepting chemotaxis proteins, diguanylate cyclases/phosphodiesterases. NIT-containing receptors regulate cellular functions such as gene expression (transcription anti-terminators and histidine kinases), cell motility (chemotaxis receptors), and enzyme activity (diguanylate cyclases/phosphodiesterases), in response to changes in nitrate and/or nitrite concentrations. The NIT domain is found as both an extracellular and an intracellular sensor. The NIT domain can be found in combination with other signalling domains, such as ANTAR, HAMP (IPR003660 from INTERPRO), MCP, Hemerythrins (IPR002063 from INTERPRO), CHASE (IPR006189 from INTERPRO), GGDEF (IPR000160 from INTERPRO), PAS (IPR000014 from INTERPRO), EAL (IPR001633 from INTERPRO), HK (IPR005467 from INTERPRO), GAF, REC and Hpt (IPR008207 from INTERPRO).; PDB: 4AKK_A.
Probab=23.92 E-value=7.9e+02 Score=25.10 Aligned_cols=45 Identities=16% Similarity=0.226 Sum_probs=37.3
Q ss_pred HHHHHHhHHHHHHhhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 002678 52 IKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEK 103 (893)
Q Consensus 52 IKKLQR~RDQIKtW~~s~eIKDK~~~~~~~~~L~e~RKlIE~~MErFK~vEK 103 (893)
|.-||+-|..=-.|++++.-..+. .|...|+..-+.+.+|...=.
T Consensus 5 v~~LQ~ERg~s~~~l~s~~~~~~~-------~l~~qr~~tD~a~~~~~~~~~ 49 (247)
T PF08376_consen 5 VHALQQERGLSAAYLASPGKQFRA-------ELKAQRAATDRAIAELRRALA 49 (247)
T ss_dssp HHHHHHHHHHHHHHHHTTSSS-HH-------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCcchHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 677999999999999998733344 999999999999999877655
No 491
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
Probab=23.91 E-value=4.6e+02 Score=31.83 Aligned_cols=125 Identities=22% Similarity=0.261 Sum_probs=0.0
Q ss_pred hHHHhHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhHHHHHHhhccccccccccchhhHHHHHHHHHHHHHHHH
Q 002678 17 KVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREME 96 (893)
Q Consensus 17 KV~EGve~Fd~i~eK~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~eIKDK~~~~~~~~~L~e~RKlIE~~ME 96 (893)
.+-|||+.|.+=|+|+ +..-.-|..|+++.
T Consensus 289 LLLEGIe~ygDdW~kV--------------------------------------------------A~HVgtKt~EqCIl 318 (531)
T COG5259 289 LLLEGIEMYGDDWDKV--------------------------------------------------ARHVGTKTKEQCIL 318 (531)
T ss_pred HHHHHHHHhhhhHHHH--------------------------------------------------HHHhCCCCHHHHHH
Q ss_pred HH-------HHHHhhhccccccccccC---------------------------------CCCCCCchHHhH---HHHHH
Q 002678 97 RF-------KICEKETKTKAFSKEGLG---------------------------------QQPKTDPKEKAK---SETRD 133 (893)
Q Consensus 97 rF-------K~vEKesKtKafSkEGL~---------------------------------~~~k~DP~ekek---~E~~~ 133 (893)
+| |.+=|--+--.+++-+|. ...-.++..+-. .++.+
T Consensus 319 ~FL~LPieD~~l~k~~~~~~~~~G~~~f~~seNPVlstis~L~~iV~p~v~s~~q~~~~k~g~~~~~n~e~~~~~~~~~~ 398 (531)
T COG5259 319 HFLQLPIEDNYLSKGDGKGDNSKGRLPFDGSENPVLSTISFLAGIVNPRVQSEKQRAIIKSGKISHINRESQEHIEEVIE 398 (531)
T ss_pred HHHcCCcchhhhhcccCcCCCCCCccccccCCCchhhHHHHHHHhcCHHHHHHHhhhhhhccceecCccchhhHHHHHHH
Q ss_pred HHHHHHHHH--------HHHHHHHHHHHhhhhcccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002678 134 WLNNLVSEL--------ESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLL 192 (893)
Q Consensus 134 wL~~~IdeL--------~~QiE~~EaEiE~Ls~KK~K~~~~r~~~le~~ierhk~Hi~kLE~lLRlL 192 (893)
+.-+.+.++ ++|++.+-.++=.+..+|.|-+-.-+.+|+.++++-+--+.. .++||.|
T Consensus 399 ~al~s~~eka~l~~~~Eerkm~rL~~~~iq~qleKlk~Kl~~~k~L~~~~~L~rqeLd~-nlll~rl 464 (531)
T COG5259 399 YALDSGKEKAKLQATNEERKMERLRNVLIQAQLEKLKMKLGHLKELEKSTSLERQELDA-NLLLRRL 464 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
No 492
>COG1722 XseB Exonuclease VII small subunit [DNA replication, recombination, and repair]
Probab=23.77 E-value=1.3e+02 Score=28.09 Aligned_cols=39 Identities=23% Similarity=0.344 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHhhhCCCCChhh-hhhhhhHHHHHHHhC
Q 002678 178 HKAHIMKLELILRLLDNDELSPEQ-VNDVKDLLEDYVERN 216 (893)
Q Consensus 178 hk~Hi~kLE~lLRlLdN~~l~pe~-V~~IKddieyYve~n 216 (893)
..--+..||.|++.|+||.+.-|+ |...++-++.|-.+-
T Consensus 12 fE~~l~eLE~IV~~LE~Gel~Le~sl~~~erG~~L~k~c~ 51 (81)
T COG1722 12 FEEALAELEEIVESLESGELPLEEALKEFERGMALYKECQ 51 (81)
T ss_pred HHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHH
Confidence 444567789999999999998555 445777777776543
No 493
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=23.71 E-value=9.6e+02 Score=29.27 Aligned_cols=33 Identities=18% Similarity=0.202 Sum_probs=21.7
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002678 125 EKAKSETRDWLNNLVSELESQIDSFEAELEGLT 157 (893)
Q Consensus 125 ekek~E~~~wL~~~IdeL~~QiE~~EaEiE~Ls 157 (893)
...|-|+..-...++|-|.+.-|.-|.|+=+|+
T Consensus 466 Q~lkgelEkat~SALdlLkrEKe~~EqefLslq 498 (527)
T PF15066_consen 466 QQLKGELEKATTSALDLLKREKETREQEFLSLQ 498 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555566777777777777777776664
No 494
>PF03105 SPX: SPX domain; InterPro: IPR004331 The SPX domain is named after SYG1/Pho81/XPR1 proteins. This 180 residue length domain is found at the amino terminus of a variety of proteins. In the yeast protein SYG1, the N terminus directly binds to the G- protein beta subunit and inhibits transduction of the mating pheromone signal [] suggesting that all the members of this family are involved in G-protein associated signal transduction. The C-terminal of these proteins often have an EXS domain (IPR004342 from INTERPRO) []. The N-termini of several proteins involved in the regulation of phosphate transport, including the putative phosphate level sensors PHO81 from Saccharomyces cerevisiae and NUC-2 from Neurospora crassa, are also members of this family [, ]. NUC-2 contains several ankyrin repeats (IPR002110 from INTERPRO). Several members of this family are the XPR1 proteins: the xenotropic and polytropic retrovirus receptor confers susceptibility to infection with Murine leukemia virus (MLV) []. The similarity between SYG1, phosphate regulators and XPR1 sequences has been previously noted, as has the additional similarity to several predicted proteins, of unknown function, from Drosophila melanogaster, Arabidopsis thaliana, Caenorhabditis elegans, Schizosaccharomyces pombe, and Saccharomyces cerevisiae [, ]. In addition, given the similarities between XPR1 and SYG1 and phosphate regulatory proteins, it has been proposed that XPR1 might be involved in G-protein associated signal transduction [, , ] and may itself function as a phosphate sensor [].
Probab=23.65 E-value=5.9e+02 Score=26.26 Aligned_cols=32 Identities=19% Similarity=0.396 Sum_probs=22.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002678 126 KAKSETRDWLNNLVSELESQIDSFEAELEGLT 157 (893)
Q Consensus 126 kek~E~~~wL~~~IdeL~~QiE~~EaEiE~Ls 157 (893)
.+-..+.+|...-..+|..+++.++.+++.+.
T Consensus 102 ~El~KVn~Fy~~k~~el~~~~~~L~~ql~~l~ 133 (275)
T PF03105_consen 102 EELEKVNDFYKEKEKELRERLEELQKQLEELR 133 (275)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445667777777777777777777777773
No 495
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=23.64 E-value=2.3e+02 Score=34.60 Aligned_cols=21 Identities=10% Similarity=0.113 Sum_probs=14.6
Q ss_pred HHHHHHHHhHHHHHHhhcccc
Q 002678 50 KEIKKLQRYRDQIKTWIQSSE 70 (893)
Q Consensus 50 KEIKKLQR~RDQIKtW~~s~e 70 (893)
.+-++++..=++.+.|+..+|
T Consensus 557 ~~~~~~~~~l~~~~~~l~~~d 577 (616)
T PRK05183 557 AERAAIDAAMAALREVAQGDD 577 (616)
T ss_pred HHHHHHHHHHHHHHHHHhcCC
Confidence 344566667777888998763
No 496
>PF07139 DUF1387: Protein of unknown function (DUF1387); InterPro: IPR009816 This family represents a conserved region approximately 300 residues long within a number of hypothetical proteins of unknown function that seem to be restricted to mammals.
Probab=23.62 E-value=4.6e+02 Score=30.03 Aligned_cols=31 Identities=39% Similarity=0.367 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHhhcccccc
Q 002678 42 EKFEADLKKEIKKLQRYRDQIKTWIQSSEIK 72 (893)
Q Consensus 42 EKlE~DLKKEIKKLQR~RDQIKtW~~s~eIK 72 (893)
||-=-||-++.=-|.|||=-||-=+.++--|
T Consensus 156 EKSvKDLqRctvSL~RYr~~lkee~d~S~k~ 186 (302)
T PF07139_consen 156 EKSVKDLQRCTVSLTRYRVVLKEEMDSSIKK 186 (302)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 4555566666666666666666655554333
No 497
>cd07591 BAR_Rvs161p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 161 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 161 (Rvs161p) and Schizosaccharomyces pombe Hob3 (homolog of Bin3). S. cerevisiae Rvs161p plays a role in regulating cell polarity, actin cytoskeleton polarization, vesicle trafficking, endocytosis, bud formation, and the mating response. It forms a heterodimer with another BAR domain protein Rvs167p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. S. pombe Hob3 is important in regulating filamentous actin localization an
Probab=23.55 E-value=7.8e+02 Score=26.46 Aligned_cols=35 Identities=17% Similarity=0.177 Sum_probs=21.8
Q ss_pred HHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhHHHHHHhhc
Q 002678 24 VFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQ 67 (893)
Q Consensus 24 ~Fd~i~eK~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~ 67 (893)
.||+.-.++. .+|..+||=+|-+..++|.|+.-+.
T Consensus 12 ~F~~~e~~f~---------~~e~~~~kL~k~~k~y~da~~~l~~ 46 (224)
T cd07591 12 EFEFEERRYR---------TMEKASTKLQKEAKGYLDSLRALTS 46 (224)
T ss_pred HHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555552 4566677777777777777765443
No 498
>PRK00578 prfB peptide chain release factor 2; Validated
Probab=23.50 E-value=6.6e+02 Score=29.36 Aligned_cols=105 Identities=11% Similarity=0.290 Sum_probs=0.0
Q ss_pred HHHHhhhHHHhHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhHHHHHHhhccccccccccchhhHHHHHHHHHH
Q 002678 11 IDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKL 90 (893)
Q Consensus 11 IDr~lKKV~EGve~Fd~i~eK~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~eIKDK~~~~~~~~~L~e~RKl 90 (893)
|..+.+.+.+--..|+.++.-+ ++| .|++++++|...=..-.-|-.....+ .|......
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~----------~l~-~~~~~~~~l~~~l~~p~~~~d~~~~~----------~l~ke~~~ 60 (367)
T PRK00578 2 INEISERLKDLDEKLENIRGVL----------DVD-ALKERLEELEAEAEDPDFWNDQERAQ----------KVTKELSS 60 (367)
T ss_pred chHHHHHHHHHHHHHHHHHhhC----------CHH-HHHHHHHHHHHHhcCCccccCHHHHH----------HHHHHHHH
Q ss_pred HHHHHHHHHHHHhhhccccccccccCCCCCCCchHHhHHHHHHHHHH-----HHHHHHHHHHHHHHHHhhh
Q 002678 91 IEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNN-----LVSELESQIDSFEAELEGL 156 (893)
Q Consensus 91 IE~~MErFK~vEKesKtKafSkEGL~~~~k~DP~ekek~E~~~wL~~-----~IdeL~~QiE~~EaEiE~L 156 (893)
++..++.|+.+++ ..++..++.+.|.+ +.+.++..++.++.+++.+
T Consensus 61 L~~iv~~~~~l~~--------------------~~~e~~~~~ell~~e~D~el~~~a~~e~~~l~~~l~~l 111 (367)
T PRK00578 61 LKAKLDTLEELRQ--------------------RLDDLEELLELAEEEDDEETLAEAEAELKALEKKLAAL 111 (367)
T ss_pred HHHHHHHHHHHHH--------------------HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHH
No 499
>COG2924 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.41 E-value=59 Score=30.75 Aligned_cols=26 Identities=31% Similarity=0.516 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccccc
Q 002678 85 VDARKLIEREMERFKICEKETKTKAF 110 (893)
Q Consensus 85 ~e~RKlIE~~MErFK~vEKesKtKaf 110 (893)
.|+||++|++|+.|=-=++.-+.-.|
T Consensus 60 ~e~Rk~Leqem~~flf~~~~~~~~GY 85 (90)
T COG2924 60 AEHRKLLEQEMVNFLFEGKAVHIEGY 85 (90)
T ss_pred HHHHHHHHHHHHHHhhcCcccccccc
Confidence 58999999999999665665555444
No 500
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=23.40 E-value=7.6e+02 Score=24.75 Aligned_cols=165 Identities=14% Similarity=0.159 Sum_probs=0.0
Q ss_pred chhhhHHHHhhhHHHhHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhHHHHHHhhccccccccccchhhHHHHH
Q 002678 6 KLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALV 85 (893)
Q Consensus 6 KLQ~EIDr~lKKV~EGve~Fd~i~eK~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~eIKDK~~~~~~~~~L~ 85 (893)
+|..=++++.|+-.+....+.++-..+..-........ ..|..-|+++-+.=+.+..-...---++-. .+..+|.
T Consensus 22 ~l~~~~~~~~k~~~~l~~~~~elg~~~~~Ls~~e~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~e~L~ 96 (218)
T cd07596 22 KLSKQAQRLVKRRRELGSALGEFGKALIKLAKCEEEVG--GELGEALSKLGKAAEELSSLSEAQANQELV---KLLEPLK 96 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhHHH
Q ss_pred HHHHHHHHHHHHHHH----------HHhhhccccccccccCCCCCCCchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002678 86 DARKLIEREMERFKI----------CEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEG 155 (893)
Q Consensus 86 e~RKlIE~~MErFK~----------vEKesKtKafSkEGL~~~~k~DP~ekek~E~~~wL~~~IdeL~~QiE~~EaEiE~ 155 (893)
++.+.+..-.+-|+. +++....|-=-.+.|..... .+.+-.+=|..-|.+++.+++..+.+++.
T Consensus 97 ~y~~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~~~kl~~~~~------~~~~ki~~l~~~i~~~e~~~~~~~~~~~~ 170 (218)
T cd07596 97 EYLRYCQAVKETLDDRADALLTLQSLKKDLASKKAQLEKLKAAPG------IKPAKVEELEEELEEAESALEEARKRYEE 170 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC------CchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhcccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhC
Q 002678 156 LTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDN 194 (893)
Q Consensus 156 Ls~KK~K~~~~r~~~le~~ierhk~Hi~kLE~lLRlLdN 194 (893)
+ .-.-..|..+||..+-+-+-.+|.+
T Consensus 171 i-------------~~~~~~El~~f~~~~~~dlk~~l~~ 196 (218)
T cd07596 171 I-------------SERLKEELKRFHEERARDLKAALKE 196 (218)
T ss_pred H-------------HHHHHHHHHHHHHHHHHHHHHHHHH
Done!