Query 002678
Match_columns 893
No_of_seqs 284 out of 452
Neff 3.7
Searched_HMMs 29240
Date Tue Mar 26 21:49:10 2013
Command hhsearch -i /local_scratch/syshi/lefta3m2/002678.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H2_77-80//hhsearch_pdb/002678hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1i84_S Smooth muscle myosin he 1.0 1 1 31.0 4.9 15 209-223 501-516 (1184)
2 3ghg_A Fibrinogen alpha chain; 1.0 1 1 30.0 9.6 100 41-189 55-154 (562)
3 2oez_A UPF0289 protein VP2528; 1.0 1 1 25.6 6.9 122 46-196 58-180 (247)
4 2dfs_A Myosin-5A; myosin-V, in 1.0 1 1 23.9 9.5 10 59-68 96-105 (1080)
5 3m3w_A Pacsin3, protein kinase 1.0 1 1 22.8 12.0 41 10-56 21-61 (320)
6 2wr1_A Hemagglutinin; glycopro 1.0 1 1 21.5 -1.7 34 851-891 473-506 (509)
7 3hhm_B NISH2 P85alpha; PI3KCA, 1.0 1 1 20.9 4.3 109 88-204 160-275 (373)
8 3aco_A Pacsin2, protein kinase 1.0 1 1 20.9 9.8 23 10-32 30-52 (350)
9 4f23_A Hemagglutinin, H16; sia 1.0 1 1 20.5 -2.0 108 113-228 364-480 (515)
10 1wmi_B RELB, hypothetical prot 1.0 1 1 20.3 1.7 63 166-228 4-67 (67)
No 1
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=1.00 E-value=1 Score=31.01 Aligned_cols=15 Identities=27% Similarity=0.649 Sum_probs=6.7
Q ss_pred HHHHHHHCCC-CCCCC
Q ss_conf 9999982898-86655
Q 002678 209 LEDYVERNQD-DFEEF 223 (893)
Q Consensus 209 ieyYve~nqd-df~ef 223 (893)
-+.|...+=+ .|.+|
T Consensus 501 q~ey~~Egi~~~~i~~ 516 (1184)
T 1i84_S 501 QEEYQREGIEWNFIDF 516 (1184)
T ss_dssp HHHHHHHTCSCCCCCC
T ss_pred HHHHHHCCCCCCCCCC
T ss_conf 9999964997501365
No 2
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=1.00 E-value=1 Score=30.02 Aligned_cols=100 Identities=13% Similarity=0.172 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 78889999999999988699998752152100001002467889999999999999979988520465342122588999
Q 002678 41 KEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPK 120 (893)
Q Consensus 41 KEKlE~DLKKEIKKLQR~RDQIKtW~~s~eIKDK~~~~~~~~~L~E~RKlIE~~MErFK~vEKesKtKafSkEGL~~~~k 120 (893)
=+|.|-||++-|.||...-|+ |..+|+-|+.-|+.- --+ |.
T Consensus 55 LdkqErDltkrINELKnqLEd----------------------lsKnsKdseqy~k~~---~E~----------Lr---- 95 (562)
T 3ghg_A 55 IDEVNQDFTNRINKLKNSLFE----------------------YQKNNKDSHSLTTNI---MEI----------LR---- 95 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHTH----------------------HHHHHHHHHHHHHHH---HHT----------TS----
T ss_pred HHHHCCCHHHHHHHHHHHHHH----------------------HHHHCHHHHHHHHHH---HHH----------HH----
T ss_conf 876427189999999999999----------------------876010199999999---999----------99----
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 991588679999999999999999787789887421001289996027789999998799999999999
Q 002678 121 TDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELIL 189 (893)
Q Consensus 121 ~Dp~ekek~E~~~wL~~~IdeL~~QiE~~EaEiE~L~~KK~K~~~~r~~~le~~ierhk~Hi~kLE~iL 189 (893)
.+.....+...=++.+-++|+++|+.++.+|+..- .+|..|+..|+..+--|.|||.-+
T Consensus 96 --~rq~q~~dNdNtynE~S~ELRRrIqyLKekVdnQl--------snIrvLQsnLedq~~kIQRLEvDI 154 (562)
T 3ghg_A 96 --GDFSSANNRDNTYNRVSEDLRSRIEVLKRKVIEKV--------QHIQLLQKNVRAQLVDMKRLEVDI 154 (562)
T ss_dssp --SHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf --99876311102689987999999999999999999--------999999999999999999999999
No 3
>2oez_A UPF0289 protein VP2528; immunoglobulin fold, alpha-structure, structural genomics, P protein structure initiative; HET: MSE; 1.97A {Vibrio parahaemolyticus} SCOP: e.68.1.1
Probab=1.00 E-value=1 Score=25.58 Aligned_cols=122 Identities=17% Similarity=0.145 Sum_probs=80.2
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCH
Q ss_conf 999999-9999886999987521521000010024678899999999999999799885204653421225889999915
Q 002678 46 ADLKKE-IKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPK 124 (893)
Q Consensus 46 ~DLKKE-IKKLQR~RDQIKtW~~s~eIKDK~~~~~~~~~L~E~RKlIE~~MErFK~vEKesKtKafSkEGL~~~~k~Dp~ 124 (893)
+|||-| ||-|.|.|-.++.|..+.+|-.. .|......|+..... |...+|..-
T Consensus 58 ~dlK~eLlKeLERq~~~L~~~~~~P~Vd~~--------~l~~~l~~l~~~~~~-----------------L~~~~r~Gq- 111 (247)
T 2oez_A 58 IQLKSELAKDLEKQRLSYRHWLNVEGVDQE--------ALNSLLNEIDVVHSQ-----------------LMGAERFGQ- 111 (247)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTTTCTTSCHH--------HHHHHHHHHHHHHHH-----------------HHHCCSTTH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCHH--------HHHHHHHHHHHHHHH-----------------HHHCCCCCC-
T ss_conf 989999999999999999988469986799--------999999999999999-----------------973675530-
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 886799999999999999997877898874210012899960277899999987999999999998552899
Q 002678 125 EKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDE 196 (893)
Q Consensus 125 ekek~E~~~wL~~~IdeL~~QiE~~EaEiE~L~~KK~K~~~~r~~~le~~ierhk~Hi~kLE~iLRlL~N~~ 196 (893)
.-| .-+||...=.-+.--=-.++-|+=.+..=-......|..+++.+++-..--..-+.++||++-+..
T Consensus 112 -~Lr--ede~L~~iRQR~~iPGG~C~FDLP~yh~Wl~~p~~~R~~dl~~W~~~l~pl~~al~liL~LlR~s~ 180 (247)
T 2oez_A 112 -ALK--EDRFLSSIRQRFNLPGGSCCFDLPALHYWLHLPIERKKHDANQWQKSLKPLSDALTLWLKLARETG 180 (247)
T ss_dssp -HHH--HCHHHHHHHHHHHC----CGGGCHHHHHHHTSCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTC
T ss_pred -HHH--HHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf -335--708999988461599815786867889987799999999999999988999999999999998359
No 4
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=1.00 E-value=1 Score=23.89 Aligned_cols=10 Identities=20% Similarity=0.112 Sum_probs=5.6
Q ss_pred HHHHHHHHCC
Q ss_conf 9999875215
Q 002678 59 RDQIKTWIQS 68 (893)
Q Consensus 59 RDQIKtW~~s 68 (893)
+++|=||+..
T Consensus 96 ~~~iYTy~G~ 105 (1080)
T 2dfs_A 96 SKLIYTYCGI 105 (1080)
T ss_dssp TCCCEEEETT
T ss_pred CCCCHHCCCC
T ss_conf 5773102574
No 5
>3m3w_A Pacsin3, protein kinase C and casein kinase II substrate P; mouse, BAR domain, endocytosis; 2.60A {Mus musculus} PDB: 3syv_A 3qe6_A
Probab=1.00 E-value=1 Score=22.76 Aligned_cols=41 Identities=10% Similarity=0.320 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 68998666898699789998976128980367888999999999998
Q 002678 10 EIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQ 56 (893)
Q Consensus 10 EIDr~lKKV~EGie~Fd~i~eK~~~a~n~nQKEKlE~DLKKEIKKLQ 56 (893)
-+|.+++++..|+...+++-+=+ .+|-.+|-+--|.+.||-
T Consensus 21 g~~~l~~~~~~g~~~~~el~~f~------keRa~iE~~Yak~L~kLa 61 (320)
T 3m3w_A 21 NYRRTVQRVEDGHRLCGDLVSCF------QERARIEKAYAQQLADWA 61 (320)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHH
T ss_conf 68999999998899999999999------999999999999999999
No 6
>2wr1_A Hemagglutinin; glycoprotein, lipoprotein, envelope protein, viral protein; HET: SIA GAL NAG BMA MAN; 2.10A {Unidentified influenza virus} PDB: 2wr0_A* 2wr2_A* 2wr3_A* 2wr4_A* 2wr5_A 2wrf_A* 2wr7_A* 2wrb_A* 2wrc_A 2wrd_A 2wre_A* 3gbm_A* 2fk0_A* 3s11_A* 3s13_A* 3s12_A* 3fku_A*
Probab=1.00 E-value=1 Score=21.53 Aligned_cols=34 Identities=18% Similarity=0.388 Sum_probs=22.3
Q ss_pred CCEEEEEEECCCCCCCCCCCCCCCCCCCCEEEECCCHHHHC
Q ss_conf 41579999767677531134522000356177211023220
Q 002678 851 FEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDEL 891 (893)
Q Consensus 851 yErGsY~yFDp~~~~~~~~~~W~qk~K~eFtl~Y~~LE~rl 891 (893)
.-.|.|.+|--. +.=|...-++=|.+|....++-
T Consensus 473 ~GnGCFe~~Hkc-------d~~cmesirNgTYd~~~y~eEs 506 (509)
T 2wr1_A 473 LGNGCFEFYHKC-------DDECMNSVKNGTYDYPKYEEES 506 (509)
T ss_dssp CSSSEEEESSCC-------CHHHHHHHHTTCCCHHHHHTTT
T ss_pred HCCCCEEEEECC-------CHHHHHHHHCCCCCCHHHHHHH
T ss_conf 478705453111-------6778888766887870555665
No 7
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=1.00 E-value=1 Score=20.94 Aligned_cols=109 Identities=22% Similarity=0.321 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHHHHCCCC-CCCCCCCCCC-CCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 9999999999799885204653-4212258899-999158867-999999999999999978778988742100128999
Q 002678 88 RKLIEREMERFKICEKETKTKA-FSKEGLGQQP-KTDPKEKAK-SETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTR 164 (893)
Q Consensus 88 RKlIE~~MErFK~vEKesKtKa-fSkEGL~~~~-k~Dp~ekek-~E~~~wL~~~IdeL~~QiE~~EaEiE~L~~KK~K~~ 164 (893)
|..||.=-|.-|.+|...+|-. |+|+.+..-. .--|.|..+ .+-.+.|+.-|.+|+..-+.++.+++...
T Consensus 160 ~~a~~af~~~~~~f~~q~~~~e~~~~~~~~~~~~~~~~~e~~~~~~n~~~l~~~~~~~~~~~~~l~~~~~~~~------- 232 (373)
T 3hhm_B 160 RTAIEAFNETIKIFEEQCQTQERYSKEYIEKFKREGNEKEIQRIMHNYDKLKSRISEIIDSRRRLEEDLKKQA------- 232 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
T ss_conf 9999999999999999999898876422355553058688888988699999999999999999999999999-------
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHH----HHHHHCCCCCHHHHHH
Q ss_conf 602778999999879999999999----9855289989356654
Q 002678 165 PPRLTHLETSITRHKAHIMKLELI----LRLLDNDELSPEQVND 204 (893)
Q Consensus 165 ~~r~~~le~~ierhk~Hi~kLE~i----LRlL~N~~ldpe~V~~ 204 (893)
...-+++..+...|=.+..|..+ +.-|....+..++|++
T Consensus 233 -~~~~~~~~~~~~lkp~l~ql~k~rd~~~~~L~~~g~~~~~i~~ 275 (373)
T 3hhm_B 233 -AEYREIDKRMNSIKPDLIQLRKTRDQYLMWLTQKGVRQKKLNE 275 (373)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHTC-----------------
T ss_pred -HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf -9999998876516927777788888999999875998788888
No 8
>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.70A {Homo sapiens}
Probab=1.00 E-value=1 Score=20.86 Aligned_cols=23 Identities=17% Similarity=0.446 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 68998666898699789998976
Q 002678 10 EIDRVLKKVQEGVDVFDSIWNKV 32 (893)
Q Consensus 10 EIDr~lKKV~EGie~Fd~i~eK~ 32 (893)
-++.+++++..|+...+++-+=+
T Consensus 30 g~~~L~~r~~~g~~~~~el~~f~ 52 (350)
T 3aco_A 30 NYKRTVKRIDDGHRLCSDLMNCL 52 (350)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 82999999998999999999999
No 9
>4f23_A Hemagglutinin, H16; sialic acid, glycolysation, membrane, viral P; HET: NAG; 1.70A {Influenza a virus} PDB: 4fiu_A*
Probab=1.00 E-value=1 Score=20.45 Aligned_cols=108 Identities=19% Similarity=0.340 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q ss_conf 225889999915886799999999999999997877898874210012899960277899999-9879999999999985
Q 002678 113 EGLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSI-TRHKAHIMKLELILRL 191 (893)
Q Consensus 113 EGL~~~~k~Dp~ekek~E~~~wL~~~IdeL~~QiE~~EaEiE~L~~KK~K~~~~r~~~le~~i-erhk~Hi~kLE~iLRl 191 (893)
+|-+.++.+.--+++-...-.=|+..||..+.|.|..+.|...| +.||..|...+ +..---..-=--||-+
T Consensus 364 qG~G~AAD~kSTQ~AId~It~k~N~iiekmn~qf~~i~~ef~~~--------e~ri~~l~~~~~D~~~dvwsynaELlVl 435 (515)
T 4f23_A 364 QGTGIAADKTSTQKAINEITTKINNIIEKMNGNYDSIRGEFNQV--------EKRINMIADRVDDAVTDIWSYNAKLLVL 435 (515)
T ss_dssp SCEEEEECHHHHHHHHHHHHHHHHHHHHTCCSCCSCCCCCCCTT--------CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_conf 57423332787999999887889999999877899888889999--------9999999876423344455404888865
Q ss_pred HHCCC-CC--HHHHHHHHHHHHHHHHHCCCC-----CCCCCCCCC
Q ss_conf 52899-89--356654566799999828988-----665577865
Q 002678 192 LDNDE-LS--PEQVNDVKDLLEDYVERNQDD-----FEEFSDVDE 228 (893)
Q Consensus 192 L~N~~-ld--pe~V~~IkDdieyYve~nqdd-----f~ef~ede~ 228 (893)
|+|+. || ...|..+-|.|.--+.+|..| |+-|-..|+
T Consensus 436 leN~~tld~~Dsnv~~L~ekvr~qLr~nA~e~GnGCFe~~HKCd~ 480 (515)
T 4f23_A 436 IENDRTLDLHDANVRNLHEQIKRALKDNAIDEGDGCFSILHKCND 480 (515)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHGGGEEECSSSEEEESSCCCH
T ss_pred HCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHCCCEEEEECCCCH
T ss_conf 405753530157899999999998740245536760665313377
No 10
>1wmi_B RELB, hypothetical protein PHS014; toxin-antitoxin complex, hydrolase-hydrolase inhibitor compl; 2.30A {Pyrococcus horikoshii} SCOP: a.137.13.1
Probab=1.00 E-value=1 Score=20.31 Aligned_cols=63 Identities=24% Similarity=0.370 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 0277899999987999999999998552899-89356654566799999828988665577865
Q 002678 166 PRLTHLETSITRHKAHIMKLELILRLLDNDE-LSPEQVNDVKDLLEDYVERNQDDFEEFSDVDE 228 (893)
Q Consensus 166 ~r~~~le~~ierhk~Hi~kLE~iLRlL~N~~-ldpe~V~~IkDdieyYve~nqddf~ef~ede~ 228 (893)
+|+.++-.-++|.|-||.+||-+|--+..|+ |.-+.+.+|...-..+-+.|=-|.++..++++
T Consensus 4 Ekv~~vl~ELeRlkveiQRLE~ml~p~~~~e~v~eeEl~ei~~eARd~~~e~Widaeel~e~e~ 67 (67)
T 1wmi_B 4 EKVGDVLKELERLKVEIQRLEAMLMPEERDEDITEEEIAELLELARDEDPENWIDAEELPEPED 67 (67)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHTSCBCCCTTCCHHHHHHHHHHHTCCCGGGEEEGGGSCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCHHCCCCHHHCCCCCC
T ss_conf 7899999999999999999999826546778789999999999976036202465754465669
Done!