Query 002678
Match_columns 893
No_of_seqs 284 out of 452
Neff 3.7
Searched_HMMs 13730
Date Tue Mar 26 21:54:10 2013
Command hhsearch -i /local_scratch/syshi/lefta3m2/002678.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H2_77-80//hhsearch_scop/002678hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2efla1 a.238.1.4 (A:1-288) Fo 57.1 4.1 0.0003 16.1 12.8 32 1-32 1-32 (288)
2 d2oeza1 e.68.1.1 (A:1-245) Unc 35.8 8.4 0.00061 13.7 6.9 122 46-196 56-178 (245)
3 d1bgca_ a.26.1.1 (A:) Granuloc 35.3 8.5 0.00062 13.7 7.4 55 11-67 64-119 (165)
4 d1alua_ a.26.1.1 (A:) Interleu 19.0 16 0.0012 11.6 5.1 52 12-65 63-115 (166)
5 d1ez3a_ a.47.2.1 (A:) Syntaxin 11.4 24 0.0018 10.1 10.5 100 9-108 13-119 (124)
6 d1owaa_ a.7.1.1 (A:) Spectrin 11.1 25 0.0018 10.1 1.1 47 18-67 24-70 (156)
7 d1i1rb_ a.26.1.1 (B:) Interleu 9.1 32 0.0024 9.2 4.0 21 12-32 63-83 (167)
8 d1u2ma_ f.48.1.1 (A:) Periplas 7.1 45 0.0033 8.1 2.8 20 202-221 99-118 (143)
9 d1fioa_ a.47.2.1 (A:) Sso1 {Ba 6.2 54 0.0039 7.5 11.0 95 9-108 12-110 (196)
10 d2b5dx1 a.8.3.3 (X:415-528) Al 5.7 60 0.0044 7.1 5.2 37 172-208 61-97 (114)
No 1
>d2efla1 a.238.1.4 (A:1-288) Formin-binding protein 1, FNBP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=57.13 E-value=4.1 Score=16.07 Aligned_cols=32 Identities=25% Similarity=0.350 Sum_probs=20.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 96334024568998666898699789998976
Q 002678 1 MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKV 32 (893)
Q Consensus 1 Maa~RKLQ~EIDr~lKKV~EGie~Fd~i~eK~ 32 (893)
|+=...|..-+|.+++++..|+..++++-.=+
T Consensus 1 ms~~~~l~d~~~~l~~~~~~~~~~~~~~~~~~ 32 (288)
T d2efla1 1 MSWGTELWDQFDNLEKHTQWGIDILEKYIKFV 32 (288)
T ss_dssp CCHHHHTTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 97033467789999999998999999999999
No 2
>d2oeza1 e.68.1.1 (A:1-245) Uncharacterized protein VP2528 {Vibrio parahaemolyticus [TaxId: 670]}
Probab=35.78 E-value=8.4 Score=13.71 Aligned_cols=122 Identities=16% Similarity=0.133 Sum_probs=72.0
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCH
Q ss_conf 999999-9999886999987521521000010024678899999999999999799885204653421225889999915
Q 002678 46 ADLKKE-IKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPK 124 (893)
Q Consensus 46 ~DLKKE-IKKLQR~RDQIKtW~~s~eIKDK~~~~~~~~~L~E~RKlIE~~MErFK~vEKesKtKafSkEGL~~~~k~Dp~ 124 (893)
+|||.| ||-|.|++.+++.|..+++|..+ +|...-..|+..+..-.. ..+ +.
T Consensus 56 ~DlK~eLikeLerq~~~l~~~~~~p~vd~~--------~l~~~l~~i~~~~~~L~~-----------------~~~--~g 108 (245)
T d2oeza1 56 IQLKSELAKDLEKQRLSYRHWLNVEGVDQE--------ALNSLLNEIDVVHSQLMG-----------------AER--FG 108 (245)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTTTCTTSCHH--------HHHHHHHHHHHHHHHHHH-----------------CCS--TT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCHH--------HHHHHHHHHHHHHHHHHC-----------------CCC--HH
T ss_conf 879999999999999999998349986799--------999999999999999736-----------------772--10
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 886799999999999999997877898874210012899960277899999987999999999998552899
Q 002678 125 EKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDE 196 (893)
Q Consensus 125 ekek~E~~~wL~~~IdeL~~QiE~~EaEiE~L~~KK~K~~~~r~~~le~~ierhk~Hi~kLE~iLRlL~N~~ 196 (893)
..-+ --+||+..---..----.++-++=.+..=-......|..+++.+++-...=..-+.++|++|-...
T Consensus 109 ~~Lr--ede~L~~irqR~~iPGG~c~FDLP~yh~WL~~~~~~R~~~l~~W~~~l~pl~~ai~~iL~llR~s~ 178 (245)
T d2oeza1 109 QALK--EDRFLSSIRQRFNLPGGSCCFDLPALHYWLHLPIERKKHDANQWQKSLKPLSDALTLWLKLARETG 178 (245)
T ss_dssp HHHH--HCHHHHHHHHHHHC----CGGGCHHHHHHHTSCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTC
T ss_pred HHCC--HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 0045--759999999974799987677877899997799999999999999877999999999999998169
No 3
>d1bgca_ a.26.1.1 (A:) Granulocyte-colony stimulating factor (G-CSF) {Cow (Bos taurus) [TaxId: 9913]}
Probab=35.31 E-value=8.5 Score=13.66 Aligned_cols=55 Identities=7% Similarity=0.197 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHC
Q ss_conf 899866689869978999897612898036788899999999999-886999987521
Q 002678 11 IDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKL-QRYRDQIKTWIQ 67 (893)
Q Consensus 11 IDr~lKKV~EGie~Fd~i~eK~~~a~n~nQKEKlE~DLKKEIKKL-QR~RDQIKtW~~ 67 (893)
-|.||+||..|+..|..+++-+++ ...+.++..+. |+--+|-| +..++|+|.|-.
T Consensus 64 ~e~CL~rI~~GL~~yq~lL~~L~~-~~~~~~~~~~~-lq~~t~~L~~~i~~q~k~~~~ 119 (165)
T d1bgca_ 64 LRGCLNQLHGGLFLYQGLLQALAG-ISPELAPTLDT-LQLDVTDFATNIWLQMEDLGA 119 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTT-SSTTTHHHHHH-HHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HCCCCCCCHHH-HHHHHHHHHHHHHHHHHCCCC
T ss_conf 889999999999999999999985-58454211899-999999999999998655688
No 4
>d1alua_ a.26.1.1 (A:) Interleukin-6 {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.00 E-value=16 Score=11.56 Aligned_cols=52 Identities=19% Similarity=0.229 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q ss_conf 99866689869978999897612898036788899999999999-8869999875
Q 002678 12 DRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKL-QRYRDQIKTW 65 (893)
Q Consensus 12 Dr~lKKV~EGie~Fd~i~eK~~~a~n~nQKEKlE~DLKKEIKKL-QR~RDQIKtW 65 (893)
|.||+||..|+-.|...++-+++.- .+.++..++ |+-.+|-| |.+|+++|.+
T Consensus 63 e~CL~ri~~GL~~yq~lL~~l~~~~-~~~~~~~~~-l~~~~~~L~~~i~qk~k~~ 115 (166)
T d1alua_ 63 ETCLVKIITGLLEFEVYLEYLQNRF-ESSEEQARA-VQMSTKVLIQFLQKKAKNL 115 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC-STTHHHHHH-HHHHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHC-CCCCCCHHH-HHHHHHHHHHHHHHHHHCC
T ss_conf 7899999999999999999999766-787110889-9999999999999987384
No 5
>d1ez3a_ a.47.2.1 (A:) Syntaxin 1A N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=11.43 E-value=24 Score=10.14 Aligned_cols=100 Identities=18% Similarity=0.261 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC--CCCH---HHH
Q ss_conf 56899866689869978999897612898036--7888999999999998869999875215210000--1002---467
Q 002678 9 GEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQ--KEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDK--KVSA---SYE 81 (893)
Q Consensus 9 ~EIDr~lKKV~EGie~Fd~i~eK~~~a~n~nQ--KEKlE~DLKKEIKKLQR~RDQIKtW~~s~eIKDK--~~~~---~~~ 81 (893)
.+|.+.+.+|.+.|+.+...+.|...+.+.-+ +++++..+..=.++-...|..||.--..++-..+ .+++ +..
T Consensus 13 ~~Ir~~I~~i~~~v~~i~~~~~~~l~~~~~~~~~~~~l~~~~~~i~~~a~~ik~~Lk~l~~~~~~~~~~~~~s~~~Rir~ 92 (124)
T d1ez3a_ 13 EEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEEGLNRSSADLRIRK 92 (124)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
T ss_conf 99999999999999999999999875798656679999999999999999999999999987886112489979999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 889999999999999979988520465
Q 002678 82 QALVDARKLIEREMERFKICEKETKTK 108 (893)
Q Consensus 82 ~~L~E~RKlIE~~MErFK~vEKesKtK 108 (893)
....-.++.....|..|-.++.+.|.+
T Consensus 93 ~q~~~L~~kf~e~m~~yq~~q~~yr~~ 119 (124)
T d1ez3a_ 93 TQHSTLSRKFVEVMSEYNATQSDYRER 119 (124)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999999999999
No 6
>d1owaa_ a.7.1.1 (A:) Spectrin alpha chain {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.09 E-value=25 Score=10.05 Aligned_cols=47 Identities=17% Similarity=0.330 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 89869978999897612898036788899999999999886999987521
Q 002678 18 VQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQ 67 (893)
Q Consensus 18 V~EGie~Fd~i~eK~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~ 67 (893)
|.+-++.....|+.+...... -+.+||.-+ ++-++.+--+.+..|+.
T Consensus 24 i~~~~~~l~~rw~~L~~~~~~-R~~~Le~~~--~~~~F~~~~~~l~~Wl~ 70 (156)
T d1owaa_ 24 IQERRQEVLTRYQSFKERVAE-RGQKLEDSY--HLQVFKRDADDLGKWIM 70 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HCCCSCSCH--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH--HHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999999-999999999--99999999999999999
No 7
>d1i1rb_ a.26.1.1 (B:) Interleukin-6 {Human herpesvirus 8, Kaposi's sarcoma herpes-virus [TaxId: 37296]}
Probab=9.09 E-value=32 Score=9.20 Aligned_cols=21 Identities=24% Similarity=0.464 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 998666898699789998976
Q 002678 12 DRVLKKVQEGVDVFDSIWNKV 32 (893)
Q Consensus 12 Dr~lKKV~EGie~Fd~i~eK~ 32 (893)
|+||+||..|+-.|...++-+
T Consensus 63 E~CL~rI~~GL~~yq~lL~~L 83 (167)
T d1i1rb_ 63 TSCLKKLADGFFEFEVLFKFL 83 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
T ss_conf 899999999999999999999
No 8
>d1u2ma_ f.48.1.1 (A:) Periplasmic chaperon skp (HlpA) {Escherichia coli [TaxId: 562]}
Probab=7.09 E-value=45 Score=8.11 Aligned_cols=20 Identities=10% Similarity=0.215 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHCCCCCC
Q ss_conf 65456679999982898866
Q 002678 202 VNDVKDLLEDYVERNQDDFE 221 (893)
Q Consensus 202 V~~IkDdieyYve~nqddf~ 221 (893)
...|.+-|+.|.+.+.-|++
T Consensus 99 ~~~i~~~i~~ia~~~g~~lV 118 (143)
T d1u2ma_ 99 VTRIQTAVKSVANSQDIDLV 118 (143)
T ss_dssp HHHHHHHHHHHHHHTTCSEE
T ss_pred HHHHHHHHHHHHHHCCCEEE
T ss_conf 99999999999998798399
No 9
>d1fioa_ a.47.2.1 (A:) Sso1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=6.18 E-value=54 Score=7.51 Aligned_cols=95 Identities=16% Similarity=0.287 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH---HHHHHHH-HHHHHHHHHHHCCCCCCCCCCCHHHHHHH
Q ss_conf 5689986668986997899989761289803678889999---9999999-88699998752152100001002467889
Q 002678 9 GEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADL---KKEIKKL-QRYRDQIKTWIQSSEIKDKKVSASYEQAL 84 (893)
Q Consensus 9 ~EIDr~lKKV~EGie~Fd~i~eK~~~a~n~nQKEKlE~DL---KKEIKKL-QR~RDQIKtW~~s~eIKDK~~~~~~~~~L 84 (893)
.+|...+.+|...+......+.++.........+++...+ ..+|++| +++++-|+.+..+..... .....+
T Consensus 12 ~~I~~~i~~i~~~i~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~k~~~~~~~~~~~~~~-----~~~~~~ 86 (196)
T d1fioa_ 12 SQINRDLDKYDHTINQVDSLHKRLLTEVNEEQASHLRHSLDNFVAQATDLQFKLKNEIKSAQRDGIHDT-----NKQAQA 86 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCH-----HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH-----HHHHHH
T ss_conf 999999999999999999999986699986789999999999999999999999999997504552027-----899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 999999999999979988520465
Q 002678 85 VDARKLIEREMERFKICEKETKTK 108 (893)
Q Consensus 85 ~E~RKlIE~~MErFK~vEKesKtK 108 (893)
.-..+..-..|..|+.+.+..+.+
T Consensus 87 ~~l~~~l~~~~~~f~~~q~~~~~~ 110 (196)
T d1fioa_ 87 ENSRQRFLKLIQDYRIVDSNYKEE 110 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999999999
No 10
>d2b5dx1 a.8.3.3 (X:415-528) Alpha-amylase AmyC {Thermotoga maritima [TaxId: 2336]}
Probab=5.66 E-value=60 Score=7.15 Aligned_cols=37 Identities=16% Similarity=0.131 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 9999987999999999998552899893566545667
Q 002678 172 ETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDL 208 (893)
Q Consensus 172 e~~ierhk~Hi~kLE~iLRlL~N~~ldpe~V~~IkDd 208 (893)
+...+|.+-|+.++..|..+|.++.++.+-+.++...
T Consensus 61 eYA~~R~~~Hl~rF~~L~~~l~~~~id~~~L~~~E~~ 97 (114)
T d2b5dx1 61 QYAENRTKLHIKRFLNLYDQLVSGRIDEEMLRYYEWT 97 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 9999899999999999999987489899999999987
Done!