Query 002679
Match_columns 893
No_of_seqs 985 out of 5726
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 04:56:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002679.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002679hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 2.5E-78 5.4E-83 751.9 46.9 591 34-777 27-620 (968)
2 PLN00113 leucine-rich repeat r 100.0 5.5E-59 1.2E-63 578.7 39.2 497 227-749 69-566 (968)
3 KOG4194 Membrane glycoprotein 100.0 4.5E-39 9.8E-44 335.6 5.7 375 350-750 81-459 (873)
4 KOG0472 Leucine-rich repeat pr 100.0 7.8E-41 1.7E-45 334.3 -11.3 477 251-743 45-541 (565)
5 KOG4194 Membrane glycoprotein 100.0 8.6E-38 1.9E-42 326.1 6.4 368 107-476 78-448 (873)
6 KOG0472 Leucine-rich repeat pr 100.0 2E-40 4.3E-45 331.5 -20.9 489 202-719 44-541 (565)
7 KOG0618 Serine/threonine phosp 100.0 1.3E-35 2.8E-40 326.7 -5.8 507 136-740 3-510 (1081)
8 KOG0618 Serine/threonine phosp 100.0 3.8E-35 8.3E-40 323.0 -7.6 322 112-457 3-324 (1081)
9 KOG0444 Cytoskeletal regulator 100.0 4E-33 8.6E-38 292.7 -3.9 363 106-477 6-372 (1255)
10 KOG0444 Cytoskeletal regulator 100.0 3.4E-33 7.3E-38 293.3 -4.8 383 82-474 7-393 (1255)
11 PLN03210 Resistant to P. syrin 99.9 2.5E-23 5.3E-28 258.9 27.6 364 82-477 532-903 (1153)
12 PLN03210 Resistant to P. syrin 99.9 1.5E-22 3.2E-27 252.0 31.2 342 124-504 551-906 (1153)
13 KOG4237 Extracellular matrix p 99.9 2.2E-24 4.7E-29 216.8 -3.0 276 276-551 68-359 (498)
14 KOG4237 Extracellular matrix p 99.9 4.5E-24 9.7E-29 214.5 -4.0 426 204-668 68-498 (498)
15 PRK15387 E3 ubiquitin-protein 99.8 4.3E-20 9.3E-25 212.5 17.0 266 396-728 202-467 (788)
16 PRK15387 E3 ubiquitin-protein 99.8 1.5E-19 3.3E-24 207.9 17.9 265 133-441 203-467 (788)
17 PRK15370 E3 ubiquitin-protein 99.8 2.7E-19 5.9E-24 207.6 17.8 246 132-408 179-428 (754)
18 PRK15370 E3 ubiquitin-protein 99.8 4.3E-18 9.3E-23 197.7 14.6 248 444-720 179-429 (754)
19 cd00116 LRR_RI Leucine-rich re 99.7 3.2E-19 6.9E-24 193.5 -2.1 279 447-742 2-319 (319)
20 cd00116 LRR_RI Leucine-rich re 99.7 1.1E-18 2.4E-23 189.2 -2.7 276 423-718 2-319 (319)
21 KOG0617 Ras suppressor protein 99.6 1.9E-18 4.1E-23 154.2 -5.7 159 101-264 27-186 (264)
22 KOG0617 Ras suppressor protein 99.6 1.3E-17 2.7E-22 149.0 -5.7 164 127-319 29-192 (264)
23 PLN03150 hypothetical protein; 99.6 4.7E-15 1E-19 172.3 13.5 147 33-190 369-526 (623)
24 PLN03150 hypothetical protein; 99.5 1.7E-14 3.7E-19 167.7 10.9 117 660-777 420-538 (623)
25 KOG4658 Apoptotic ATPase [Sign 99.1 4.1E-11 8.9E-16 142.1 5.5 199 83-288 524-730 (889)
26 COG4886 Leucine-rich repeat (L 99.1 1.1E-10 2.3E-15 130.3 8.3 199 111-318 97-296 (394)
27 KOG0532 Leucine-rich repeat (L 99.1 2.3E-12 5E-17 136.8 -5.1 182 104-295 72-253 (722)
28 COG4886 Leucine-rich repeat (L 99.1 3.6E-10 7.9E-15 126.1 9.8 152 228-386 141-292 (394)
29 KOG0532 Leucine-rich repeat (L 99.1 4.7E-12 1E-16 134.5 -5.2 175 129-336 73-247 (722)
30 PF14580 LRR_9: Leucine-rich r 99.0 2.3E-10 5E-15 108.6 4.4 85 633-719 41-126 (175)
31 KOG1259 Nischarin, modulator o 99.0 1.5E-10 3.2E-15 113.4 2.1 111 632-747 305-416 (490)
32 KOG1909 Ran GTPase-activating 99.0 1.1E-11 2.4E-16 124.5 -6.1 133 227-359 157-310 (382)
33 KOG4658 Apoptotic ATPase [Sign 99.0 2.8E-10 6.1E-15 135.1 3.2 179 83-265 546-731 (889)
34 PF14580 LRR_9: Leucine-rich r 98.9 8.1E-10 1.8E-14 104.9 4.2 109 632-744 17-127 (175)
35 KOG1909 Ran GTPase-activating 98.9 1.1E-10 2.3E-15 117.6 -2.2 133 610-742 157-310 (382)
36 KOG3207 Beta-tubulin folding c 98.9 2.3E-10 4.9E-15 118.3 0.1 208 296-527 118-339 (505)
37 KOG3207 Beta-tubulin folding c 98.9 1.9E-10 4E-15 119.0 -0.9 135 536-670 144-283 (505)
38 KOG1259 Nischarin, modulator o 98.9 4E-10 8.6E-15 110.5 0.4 136 389-530 278-415 (490)
39 PF08263 LRRNT_2: Leucine rich 98.9 3.4E-09 7.3E-14 75.2 4.5 41 35-79 2-43 (43)
40 KOG0531 Protein phosphatase 1, 98.8 9.3E-10 2E-14 122.8 -1.5 19 392-410 302-320 (414)
41 KOG0531 Protein phosphatase 1, 98.7 1.6E-09 3.5E-14 120.9 0.0 36 684-720 234-269 (414)
42 PF13855 LRR_8: Leucine rich r 98.7 4.4E-09 9.6E-14 81.9 2.1 59 683-741 2-60 (61)
43 PF13855 LRR_8: Leucine rich r 98.7 5.8E-09 1.2E-13 81.3 2.2 60 659-718 2-61 (61)
44 KOG1859 Leucine-rich repeat pr 98.5 3.1E-09 6.8E-14 116.2 -6.0 199 537-745 83-294 (1096)
45 KOG1859 Leucine-rich repeat pr 98.4 2.1E-08 4.5E-13 110.0 -4.5 197 513-720 83-293 (1096)
46 KOG4579 Leucine-rich repeat (L 98.2 1.1E-07 2.3E-12 82.9 -2.5 115 632-749 51-165 (177)
47 KOG2120 SCF ubiquitin ligase, 98.1 2E-08 4.4E-13 98.8 -10.9 178 132-333 186-373 (419)
48 KOG2120 SCF ubiquitin ligase, 98.0 2.1E-08 4.6E-13 98.7 -11.2 106 108-213 186-296 (419)
49 KOG2982 Uncharacterized conser 98.0 6E-07 1.3E-11 88.7 -2.0 86 105-190 69-157 (418)
50 COG5238 RNA1 Ran GTPase-activa 98.0 4.5E-07 9.8E-12 88.3 -3.6 87 105-192 28-133 (388)
51 KOG4579 Leucine-rich repeat (L 97.9 1.3E-06 2.8E-11 76.3 -1.2 137 588-728 29-168 (177)
52 KOG2982 Uncharacterized conser 97.9 1E-06 2.2E-11 87.1 -3.0 63 347-409 199-263 (418)
53 COG5238 RNA1 Ran GTPase-activa 97.8 1.7E-06 3.8E-11 84.3 -3.1 138 391-528 88-256 (388)
54 PF12799 LRR_4: Leucine Rich r 97.7 2.7E-05 5.8E-10 55.3 2.5 35 684-719 3-37 (44)
55 PRK15386 type III secretion pr 97.7 8.2E-05 1.8E-09 79.7 6.8 137 558-717 48-188 (426)
56 PF12799 LRR_4: Leucine Rich r 97.6 4.2E-05 9.1E-10 54.3 2.5 36 108-144 2-37 (44)
57 PRK15386 type III secretion pr 97.6 0.00023 4.9E-09 76.4 8.7 35 487-524 48-82 (426)
58 KOG1644 U2-associated snRNP A' 97.3 0.00027 5.7E-09 66.7 4.8 105 633-739 41-149 (233)
59 PF13306 LRR_5: Leucine rich r 97.3 0.00043 9.3E-09 63.4 5.5 101 627-732 28-128 (129)
60 PF13306 LRR_5: Leucine rich r 97.3 0.0004 8.8E-09 63.6 5.2 86 100-188 5-90 (129)
61 KOG3665 ZYG-1-like serine/thre 97.2 0.00012 2.5E-09 85.6 0.9 134 131-266 122-265 (699)
62 KOG1644 U2-associated snRNP A' 97.1 0.00067 1.5E-08 64.1 5.0 59 108-168 43-101 (233)
63 KOG3665 ZYG-1-like serine/thre 97.1 0.00018 4E-09 84.0 1.6 112 609-722 147-266 (699)
64 KOG2739 Leucine-rich acidic nu 96.9 0.00043 9.3E-09 68.4 2.0 82 107-192 43-129 (260)
65 KOG2739 Leucine-rich acidic nu 96.8 0.00071 1.5E-08 66.9 2.4 102 632-737 41-150 (260)
66 KOG2123 Uncharacterized conser 96.7 0.00031 6.8E-09 69.3 -1.1 100 633-736 18-123 (388)
67 KOG4341 F-box protein containi 96.4 0.00015 3.2E-09 75.8 -5.4 82 324-405 139-226 (483)
68 KOG4341 F-box protein containi 96.2 0.0002 4.4E-09 74.8 -5.7 38 632-669 399-437 (483)
69 KOG2123 Uncharacterized conser 96.0 0.00055 1.2E-08 67.6 -3.4 100 609-712 18-123 (388)
70 KOG1947 Leucine rich repeat pr 94.8 0.0019 4.2E-08 74.3 -5.0 13 346-358 294-306 (482)
71 PF00560 LRR_1: Leucine Rich R 94.7 0.012 2.5E-07 34.7 0.6 10 685-694 3-12 (22)
72 PF00560 LRR_1: Leucine Rich R 94.7 0.01 2.2E-07 34.9 0.4 21 707-728 1-21 (22)
73 KOG1947 Leucine rich repeat pr 94.6 0.0024 5.2E-08 73.5 -5.1 62 322-383 242-307 (482)
74 KOG4308 LRR-containing protein 94.2 0.001 2.2E-08 74.4 -8.7 132 612-743 146-303 (478)
75 KOG4308 LRR-containing protein 93.4 0.0013 2.8E-08 73.6 -9.8 187 515-721 88-305 (478)
76 KOG0473 Leucine-rich repeat pr 91.3 0.0062 1.3E-07 58.8 -6.5 88 101-191 36-123 (326)
77 KOG0473 Leucine-rich repeat pr 90.3 0.018 3.9E-07 55.8 -4.4 87 630-719 38-124 (326)
78 KOG1187 Serine/threonine prote 89.5 0.11 2.3E-06 56.7 0.1 52 842-893 63-134 (361)
79 PF13504 LRR_7: Leucine rich r 88.5 0.25 5.4E-06 26.9 1.0 12 132-143 2-13 (17)
80 smart00369 LRR_TYP Leucine-ric 88.2 0.37 8.1E-06 29.5 1.8 22 705-726 1-22 (26)
81 smart00370 LRR Leucine-rich re 88.2 0.37 8.1E-06 29.5 1.8 22 705-726 1-22 (26)
82 PF13516 LRR_6: Leucine Rich r 83.4 0.22 4.7E-06 29.9 -1.0 14 707-720 3-16 (24)
83 PF13516 LRR_6: Leucine Rich r 82.8 0.46 1E-05 28.5 0.3 15 658-672 2-16 (24)
84 smart00370 LRR Leucine-rich re 82.0 1.2 2.6E-05 27.2 2.0 14 659-672 3-16 (26)
85 smart00369 LRR_TYP Leucine-ric 82.0 1.2 2.6E-05 27.2 2.0 14 659-672 3-16 (26)
86 PF08693 SKG6: Transmembrane a 78.1 1.3 2.8E-05 30.2 1.3 11 789-799 13-23 (40)
87 PF12191 stn_TNFRSF12A: Tumour 76.4 1.1 2.5E-05 38.9 0.8 12 766-777 54-65 (129)
88 PF15102 TMEM154: TMEM154 prot 75.9 1.9 4.1E-05 39.0 2.1 11 861-871 126-136 (146)
89 PF01102 Glycophorin_A: Glycop 73.8 2.1 4.5E-05 37.9 1.8 28 791-819 67-94 (122)
90 KOG3864 Uncharacterized conser 73.1 1.4 3E-05 42.4 0.6 33 658-690 151-184 (221)
91 KOG3653 Transforming growth fa 71.8 9.2 0.0002 41.8 6.3 27 867-893 234-267 (534)
92 TIGR00864 PCC polycystin catio 69.8 3 6.5E-05 55.5 2.7 39 712-750 1-39 (2740)
93 KOG3864 Uncharacterized conser 69.0 1.2 2.6E-05 42.8 -0.7 83 587-669 102-187 (221)
94 PF04478 Mid2: Mid2 like cell 68.4 1.7 3.8E-05 39.5 0.1 15 787-801 48-62 (154)
95 PTZ00382 Variant-specific surf 66.8 4.6 0.0001 34.2 2.4 10 789-798 67-76 (96)
96 KOG4242 Predicted myosin-I-bin 65.9 37 0.00081 37.3 9.3 19 419-437 165-183 (553)
97 smart00365 LRR_SD22 Leucine-ri 65.1 4.5 9.8E-05 24.9 1.4 15 706-720 2-16 (26)
98 PF14575 EphA2_TM: Ephrin type 63.2 4.4 9.5E-05 32.5 1.5 17 842-858 55-71 (75)
99 KOG4242 Predicted myosin-I-bin 61.5 27 0.00059 38.3 7.4 38 370-407 439-480 (553)
100 smart00368 LRR_RI Leucine rich 56.2 9.6 0.00021 23.8 1.9 14 131-144 2-15 (28)
101 PTZ00370 STEVOR; Provisional 52.2 15 0.00033 37.3 3.5 8 812-819 277-284 (296)
102 TIGR01478 STEVOR variant surfa 52.2 15 0.00034 37.2 3.5 8 812-819 281-288 (295)
103 smart00364 LRR_BAC Leucine-ric 50.8 11 0.00025 23.1 1.5 13 132-144 3-15 (26)
104 PF08374 Protocadherin: Protoc 45.4 29 0.00063 33.8 4.1 16 786-801 36-51 (221)
105 PF08114 PMP1_2: ATPase proteo 42.8 34 0.00073 23.3 2.8 6 810-815 27-32 (43)
106 PF15050 SCIMP: SCIMP protein 40.8 36 0.00079 29.4 3.5 11 844-854 94-104 (133)
107 PF01034 Syndecan: Syndecan do 38.8 10 0.00022 28.9 -0.0 10 809-818 29-38 (64)
108 KOG3763 mRNA export factor TAP 38.7 18 0.0004 40.5 1.9 37 632-668 216-254 (585)
109 PF12273 RCR: Chitin synthesis 37.7 28 0.00061 31.5 2.7 11 812-822 19-29 (130)
110 PF05454 DAG1: Dystroglycan (D 35.9 12 0.00026 38.8 0.0 6 810-815 167-172 (290)
111 PF14610 DUF4448: Protein of u 32.3 25 0.00054 34.3 1.6 15 787-801 156-170 (189)
112 PF06365 CD34_antigen: CD34/Po 32.2 68 0.0015 31.3 4.4 6 810-815 122-127 (202)
113 PF03302 VSP: Giardia variant- 30.0 35 0.00076 37.7 2.4 30 786-815 365-394 (397)
114 PF12877 DUF3827: Domain of un 29.4 72 0.0016 36.6 4.5 32 787-818 267-298 (684)
115 PF05393 Hum_adeno_E3A: Human 28.9 87 0.0019 25.6 3.6 6 813-818 54-59 (94)
116 KOG0196 Tyrosine kinase, EPH ( 28.6 14 0.0003 43.2 -1.0 20 840-859 606-625 (996)
117 PF05568 ASFV_J13L: African sw 25.0 37 0.0008 30.3 1.1 9 810-818 50-58 (189)
118 smart00367 LRR_CC Leucine-rich 24.5 54 0.0012 19.8 1.5 11 131-141 2-12 (26)
119 PF08374 Protocadherin: Protoc 24.0 61 0.0013 31.6 2.5 26 789-814 36-61 (221)
120 KOG1219 Uncharacterized conser 21.6 1.8E+02 0.0038 39.2 6.1 27 723-749 3905-3931(4289)
121 TIGR00864 PCC polycystin catio 21.4 51 0.0011 44.8 1.8 32 664-695 1-32 (2740)
122 PF14991 MLANA: Protein melan- 20.2 27 0.00059 30.0 -0.6 11 806-816 40-50 (118)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2.5e-78 Score=751.91 Aligned_cols=591 Identities=40% Similarity=0.639 Sum_probs=432.7
Q ss_pred CHHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCCCCCCCccCceeeCCCCCEEEEEcCCCCCccccCCccCCCCCCCCEEE
Q 002679 34 STEEVHALLKWKTSLQNHDKGSLLPSWTLNNATKISPCAWFGIHCNHVGRVNSINLTNVGLKGTLHDFSFSSFPHLAYLD 113 (893)
Q Consensus 34 ~~~~~~~ll~~k~~~~~~~~~~~l~~W~~~~~~~~~~c~w~gv~c~~~~~v~~l~l~~~~l~g~~~~~~~~~l~~L~~L~ 113 (893)
.++|++||++||+++.+ + .+.+.+|+ ...+||.|.||+|+..++|+.|+|+++++.|.++ ..|..+++|++|+
T Consensus 27 ~~~~~~~l~~~~~~~~~-~-~~~~~~w~----~~~~~c~w~gv~c~~~~~v~~L~L~~~~i~~~~~-~~~~~l~~L~~L~ 99 (968)
T PLN00113 27 HAEELELLLSFKSSIND-P-LKYLSNWN----SSADVCLWQGITCNNSSRVVSIDLSGKNISGKIS-SAIFRLPYIQTIN 99 (968)
T ss_pred CHHHHHHHHHHHHhCCC-C-cccCCCCC----CCCCCCcCcceecCCCCcEEEEEecCCCccccCC-hHHhCCCCCCEEE
Confidence 46899999999999964 5 56789997 5678999999999988899999999999999887 7899999999999
Q ss_pred CCCCCCCccCCcccc-CCCCCCEEeCCCCCCCCCCCccccCCCCCCeecCCCccCCCCCCCCCCCCCCCCEEeCCCccCC
Q 002679 114 LQVNQIFGIIPPQIG-NISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLS 192 (893)
Q Consensus 114 L~~n~l~~~~~~~~~-~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 192 (893)
|++|.+.+.+|..+. .+++|++|+|++|.+++.+|. +.+++|++|+|++|.+.+.+|..++++++|++|++++|.+.
T Consensus 100 Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~ 177 (968)
T PLN00113 100 LSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLV 177 (968)
T ss_pred CCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCccc
Confidence 999999988887654 899999999999999988885 56888999999999988888888888888888888888888
Q ss_pred CCCCcccCCCCCCCEEEccCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEccCCCCCCCCCCcCC
Q 002679 193 GPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLG 272 (893)
Q Consensus 193 ~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~ 272 (893)
+.+|..+.++++|++|++++|.+.+.+|..++++++|++|++++|.+++.+|..++++++|++|++++|.+.+.+|..++
T Consensus 178 ~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~ 257 (968)
T PLN00113 178 GKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLG 257 (968)
T ss_pred ccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHh
Confidence 88888888888888888888888777777777777777777777777777777777777777777777777766666666
Q ss_pred CCCCCCEEEeecCCCCCCCCccccCCCCCCeeecCCCcCCCCCCCCCCCCCCCCEEEccCCCCccccCCCCCCCCCCCeE
Q 002679 273 NLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGL 352 (893)
Q Consensus 273 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 352 (893)
++++|++|++++|.+.+.+|..+.++++|++|++++|.+.+.+|..+.++++|+.|++++|.+.+..|..+..+++|+.|
T Consensus 258 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 337 (968)
T PLN00113 258 NLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVL 337 (968)
T ss_pred CCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEE
Confidence 77777777777776666666666666666666666666666666655566666666666665555555555555555555
Q ss_pred EccCCcCCCCcccccCCCcccceEecccccCCCCCCccccccccCceeccCCccccccCCccccCCCccceeeccccccc
Q 002679 353 ELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLL 432 (893)
Q Consensus 353 ~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 432 (893)
++++|.+++. +|..++.+++|+.|++++|++.+.+|..+..+++|+.|++++|.+.
T Consensus 338 ~L~~n~l~~~------------------------~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~ 393 (968)
T PLN00113 338 QLWSNKFSGE------------------------IPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLE 393 (968)
T ss_pred ECcCCCCcCc------------------------CChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEec
Confidence 5555555544 4444455555555555555555555555555556666666666666
Q ss_pred ccCChhhhcccccccccCCCCCcCCCccccCCCCCccceEEcccCcCcccCCccccCCCCCCEEecCCCcCcCCCCCcCC
Q 002679 433 GSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRN 512 (893)
Q Consensus 433 ~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~ 512 (893)
+.+|..+..+++|+.|++++|++++..|..+..++.|+.+++++|.+++.++..+..++
T Consensus 394 ~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~--------------------- 452 (968)
T PLN00113 394 GEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMP--------------------- 452 (968)
T ss_pred ccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCC---------------------
Confidence 66666666666666666666666666666666777777777777766654443222221
Q ss_pred CCCCCEEEcCCCcCCCCCCccccCCCCCcEEeccCCcccccCCcCcCCCCCccEEEccCCccCCCCCCCcCCCCCccEEE
Q 002679 513 LTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVID 592 (893)
Q Consensus 513 ~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ 592 (893)
+|+.|++++|++.
T Consensus 453 --------------------------~L~~L~L~~n~~~----------------------------------------- 465 (968)
T PLN00113 453 --------------------------SLQMLSLARNKFF----------------------------------------- 465 (968)
T ss_pred --------------------------CCcEEECcCceee-----------------------------------------
Confidence 2222222222221
Q ss_pred ccCCcccccCCccccCcccceeEEeccccccCCCcccccCCcccceecCCCCcccccccccccCCCCCCeeecccCcCCc
Q 002679 593 LSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQ 672 (893)
Q Consensus 593 Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 672 (893)
+.+|..+ ..++|+.|++++|++++.+|..+.++++|+.|+|++|++.+
T Consensus 466 -------~~~p~~~-------------------------~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 513 (968)
T PLN00113 466 -------GGLPDSF-------------------------GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSG 513 (968)
T ss_pred -------eecCccc-------------------------ccccceEEECcCCccCCccChhhhhhhccCEEECcCCccee
Confidence 1111111 11234444555555555555566666677777777777777
Q ss_pred ccchhhhhccCccccccccccCCCcccccccCCcccceeeCCCCcCCCCCchhhhcCCCCCEEEccCCcccccCCCCccc
Q 002679 673 EIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIPNSTAF 752 (893)
Q Consensus 673 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~g~ip~~~~~ 752 (893)
.+|..++.+++|++|+|++|.+++.+|..|..+++|++|||++|++++.+|..+..+++|+.+++++|+++|.+|..++|
T Consensus 514 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~ 593 (968)
T PLN00113 514 EIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAF 593 (968)
T ss_pred eCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchh
Confidence 77878888888888888888888888888888999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhhcCCCCCCCCCC--CCCCCC
Q 002679 753 SDALMEALQGNEGLCGDIK--GFQSCK 777 (893)
Q Consensus 753 ~~~~~~~~~gn~~lc~~~~--~~~~C~ 777 (893)
.++...++.||+.+||..+ ...+|.
T Consensus 594 ~~~~~~~~~~n~~lc~~~~~~~~~~c~ 620 (968)
T PLN00113 594 LAINASAVAGNIDLCGGDTTSGLPPCK 620 (968)
T ss_pred cccChhhhcCCccccCCccccCCCCCc
Confidence 9999999999999998632 234564
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=5.5e-59 Score=578.72 Aligned_cols=497 Identities=39% Similarity=0.583 Sum_probs=390.8
Q ss_pred CCCCEEEccCCcCCCCCCccccCCCCCCEEEccCCCCCCCCCCcCC-CCCCCCEEEeecCCCCCCCCccccCCCCCCeee
Q 002679 227 TNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLG-NLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILE 305 (893)
Q Consensus 227 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 305 (893)
.+++.|++++|.+++.++..+..+++|+.|++++|.+.+.+|..+. .+++|++|++++|.+++.+|. +.+++|++|+
T Consensus 69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~ 146 (968)
T PLN00113 69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLD 146 (968)
T ss_pred CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEE
Confidence 4677888888888877777788888888888888888777776544 777888888888887776664 4567777777
Q ss_pred cCCCcCCCCCCCCCCCCCCCCEEEccCCCCccccCCCCCCCCCCCeEEccCCcCCCCcccccCCCcccceEecccccCCC
Q 002679 306 LGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSG 385 (893)
Q Consensus 306 Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 385 (893)
+++|.+.+.+|..++++++|++|++++|.+.+.+|..+.++++|++|++++|.+.+.+|..++++++|++|++++|++.+
T Consensus 147 Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 226 (968)
T PLN00113 147 LSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSG 226 (968)
T ss_pred CcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCC
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777776
Q ss_pred CCCccccccccCceeccCCccccccCCccccCCCccceeecccccccccCChhhhcccccccccCCCCCcCCCccccCCC
Q 002679 386 SIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGN 465 (893)
Q Consensus 386 ~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~ 465 (893)
.+|..++++++|++|++++|.+.+.+|..++++++|+.|++++|.+.+.+|..+.++++|+.|++++|.+.+.+|..+..
T Consensus 227 ~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~ 306 (968)
T PLN00113 227 EIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQ 306 (968)
T ss_pred cCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcC
Confidence 66666666677777777777666666666666666666666666666666666666666666666666555555555555
Q ss_pred CCccceEEcccCcCcccCCccccCCCCCCEEecCCCcCcCCCCCcCCCCCCCEEEcCCCcCCCCCCccccCCCCCcEEec
Q 002679 466 LTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDL 545 (893)
Q Consensus 466 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l 545 (893)
+++|+.|++++|.+.+..|.. +..+++|+.|++++|.+.+.+|..+..+++|+.|++
T Consensus 307 l~~L~~L~l~~n~~~~~~~~~-----------------------~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L 363 (968)
T PLN00113 307 LQNLEILHLFSNNFTGKIPVA-----------------------LTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDL 363 (968)
T ss_pred CCCCcEEECCCCccCCcCChh-----------------------HhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEEC
Confidence 555555555555555444443 455556666666666666666666777777777777
Q ss_pred cCCcccccCCcCcCCCCCccEEEccCCccCCCCCCCcCCCCCccEEEccCCcccccCCccccCcccceeEEeccccccCC
Q 002679 546 SHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQ 625 (893)
Q Consensus 546 s~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ 625 (893)
++|++++.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|++++.+|..+..+++|+.|++++|.+.+.
T Consensus 364 s~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 443 (968)
T PLN00113 364 STNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGR 443 (968)
T ss_pred CCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCc
Confidence 77777777777777778888888888888888888888888899999999998888888888899999999999999999
Q ss_pred CcccccCCcccceecCCCCcccccccccccCCCCCCeeecccCcCCcccchhhhhccCccccccccccCCCcccccccCC
Q 002679 626 LPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNM 705 (893)
Q Consensus 626 ~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l 705 (893)
+|..+..+++|+.|++++|++.+.+|..++ .++|+.||+++|++++.+|..+.++++|+.|+|++|.+.+.+|..+.++
T Consensus 444 ~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~-~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 522 (968)
T PLN00113 444 INSRKWDMPSLQMLSLARNKFFGGLPDSFG-SKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSC 522 (968)
T ss_pred cChhhccCCCCcEEECcCceeeeecCcccc-cccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCc
Confidence 998888999999999999999998887664 5899999999999999999999999999999999999999999999999
Q ss_pred cccceeeCCCCcCCCCCchhhhcCCCCCEEEccCCcccccCCCC
Q 002679 706 RSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIPNS 749 (893)
Q Consensus 706 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~g~ip~~ 749 (893)
++|++|+|++|.+++.+|..|..+++|+.||+++|+++|.+|..
T Consensus 523 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 566 (968)
T PLN00113 523 KKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKN 566 (968)
T ss_pred cCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChh
Confidence 99999999999999999999999999999999999999999964
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=4.5e-39 Score=335.60 Aligned_cols=375 Identities=24% Similarity=0.244 Sum_probs=275.2
Q ss_pred CeEEccCCcCCCCcccccCCCcccceEecccccCCCCCCccccccccCceeccCCccccccCCccccCCCccceeecccc
Q 002679 350 SGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSN 429 (893)
Q Consensus 350 ~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n 429 (893)
+.|++++|.+...-+..|.++++|+++++.+|.++ .+|..... ..+|+.|+|.+|
T Consensus 81 ~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~------------------------sghl~~L~L~~N 135 (873)
T KOG4194|consen 81 QTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHE------------------------SGHLEKLDLRHN 135 (873)
T ss_pred eeeeccccccccCcHHHHhcCCcceeeeeccchhh-hccccccc------------------------ccceeEEeeecc
Confidence 44555655555555555555555555555555554 34433333 334455555555
Q ss_pred cccccCChhhhcccccccccCCCCCcCCCccccCCCCCccceEEcccCcCcccCCccccCCCCCCEEecCCCcCcCCCC-
Q 002679 430 TLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIP- 508 (893)
Q Consensus 430 ~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~- 508 (893)
.+...-.+.+..++.|+.||||.|.++.....+|..-.++++|+|++|+++......|..+.+|..|.|+.|+++...+
T Consensus 136 ~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r 215 (873)
T KOG4194|consen 136 LISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQR 215 (873)
T ss_pred ccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHH
Confidence 5544444455555555555555555555555555555555566666666655555555556666666666666654433
Q ss_pred CcCCCCCCCEEEcCCCcCCCCCCccccCCCCCcEEeccCCcccccCCcCcCCCCCccEEEccCCccCCCCCCCcCCCCCc
Q 002679 509 NLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQL 588 (893)
Q Consensus 509 ~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L 588 (893)
.|.+++.|+.|+|..|++...---+|.++++|+.|.+..|.++..-...|..+.++++|+++.|++...-..++.+++.|
T Consensus 216 ~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L 295 (873)
T KOG4194|consen 216 SFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSL 295 (873)
T ss_pred HhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchh
Confidence 45556666666666666655445567777777777777777776666777778888888888888877777788888889
Q ss_pred cEEEccCCcccccCCccccCcccceeEEeccccccCCCcccccCCcccceecCCCCcccccccccccCCCCCCeeecccC
Q 002679 589 HVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTN 668 (893)
Q Consensus 589 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N 668 (893)
+.|++|+|.+...-++.+..+++|++|+|++|+++...++.|..+..|++|+|++|.+...-..+|..+++|+.|||++|
T Consensus 296 ~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N 375 (873)
T KOG4194|consen 296 EQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSN 375 (873)
T ss_pred hhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCC
Confidence 99999999888888888888899999999999999999999999999999999999998877788999999999999999
Q ss_pred cCCcccch---hhhhccCccccccccccCCCcccccccCCcccceeeCCCCcCCCCCchhhhcCCCCCEEEccCCccccc
Q 002679 669 QFIQEIPI---KLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGP 745 (893)
Q Consensus 669 ~l~~~~p~---~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~g~ 745 (893)
.++..|.. .|.++++|+.|++.+|++..+....|..+++||.|||.+|.|..+-|..|..+ .|+.|-+..-.|-|.
T Consensus 376 ~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCD 454 (873)
T KOG4194|consen 376 ELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFLCD 454 (873)
T ss_pred eEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccceEEe
Confidence 99877654 47889999999999999988778899999999999999999999999999999 899999988888888
Q ss_pred CCCCc
Q 002679 746 IPNST 750 (893)
Q Consensus 746 ip~~~ 750 (893)
|.-.|
T Consensus 455 Cql~W 459 (873)
T KOG4194|consen 455 CQLKW 459 (873)
T ss_pred ccHHH
Confidence 87544
No 4
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=7.8e-41 Score=334.31 Aligned_cols=477 Identities=31% Similarity=0.445 Sum_probs=328.1
Q ss_pred CCCCEEEccCCCCCCCCCCcCCCCCCCCEEEeecCCCCCCCCccccCCCCCCeeecCCCcCCCCCCCCCCCCCCCCEEEc
Q 002679 251 KSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYL 330 (893)
Q Consensus 251 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 330 (893)
..|+.+.+++|.+.. +-..+.++..|.+|++.+|+++ ..|.+++.+..++.++.++|++. .+|+.++.+.+|..+++
T Consensus 45 v~l~~lils~N~l~~-l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~ 121 (565)
T KOG0472|consen 45 VDLQKLILSHNDLEV-LREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDC 121 (565)
T ss_pred cchhhhhhccCchhh-ccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhc
Confidence 345555555555542 2233445555566666666555 34455555666666666666655 55555666666666666
Q ss_pred cCCCCccccCCCCCCCCCCCeEEccCCcCCCCcccccCCCcccceEecccccCCCCCCccccccccCceeccCCcccccc
Q 002679 331 YTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGS 410 (893)
Q Consensus 331 ~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ 410 (893)
+.|.+. .+|+.++.+..++.++..+|+++. .|..+.++.++..+++.+|++....|.. -+++.|++||...|.+. .
T Consensus 122 s~n~~~-el~~~i~~~~~l~dl~~~~N~i~s-lp~~~~~~~~l~~l~~~~n~l~~l~~~~-i~m~~L~~ld~~~N~L~-t 197 (565)
T KOG0472|consen 122 SSNELK-ELPDSIGRLLDLEDLDATNNQISS-LPEDMVNLSKLSKLDLEGNKLKALPENH-IAMKRLKHLDCNSNLLE-T 197 (565)
T ss_pred ccccee-ecCchHHHHhhhhhhhcccccccc-CchHHHHHHHHHHhhccccchhhCCHHH-HHHHHHHhcccchhhhh-c
Confidence 666655 445555666666666666666653 3455556666666666666666433333 33667777777666665 5
Q ss_pred CCccccCCCccceeecccccccccCChhhhcccccccccCCCCCcCCCccccCCCCCccceEEcccCcCcccCCccccCC
Q 002679 411 IPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNL 490 (893)
Q Consensus 411 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l 490 (893)
+|..++.+.+|+.|++..|++. ..| .|.+|..|++++++.|++.........+++++..||+.+|++. ..|..+.-+
T Consensus 198 lP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clL 274 (565)
T KOG0472|consen 198 LPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLL 274 (565)
T ss_pred CChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHHHh
Confidence 6666677777777777777766 444 5777777777777777776555555557777777777777776 467777777
Q ss_pred CCCCEEecCCCcCcCCCCCcCCCCCCCEEEcCCCcCCCCCCccccC-----CCCCcE----EeccCC---cc-cc----c
Q 002679 491 VKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNISESFGI-----HPKLTF----IDLSHN---NF-YG----Q 553 (893)
Q Consensus 491 ~~L~~L~Ls~n~l~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~-----~~~L~~----L~ls~n---~l-~~----~ 553 (893)
.+|++||+|+|.+++..+.++++ +|+.|-+.+|++..+-.+.+.. +..|+. =-++.. .- .+ .
T Consensus 275 rsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~ 353 (565)
T KOG0472|consen 275 RSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSE 353 (565)
T ss_pred hhhhhhcccCCccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCC
Confidence 78888888888888777778887 7888888888764221111100 000110 000000 00 00 0
Q ss_pred CCcCcCCCCCccEEEccCCccCCCCCCCcCCCCC---ccEEEccCCcccccCCccccCcccceeEEeccccccCCCcccc
Q 002679 554 ISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQ---LHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSEL 630 (893)
Q Consensus 554 ~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~---L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~ 630 (893)
.........+.+.|+++.-+++ .+|.+...... .+..+++.|++. .+|..+..+..+.+.-...|+..+-+|..+
T Consensus 354 ~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~isfv~~~l 431 (565)
T KOG0472|consen 354 SFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKISFVPLEL 431 (565)
T ss_pred cccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccccchHHH
Confidence 1112234456788888888877 45554433333 789999999997 889888888888766666666667889999
Q ss_pred cCCcccceecCCCCcccccccccccCCCCCCeeecccCcCCcccchhhhhccCccccccccccCCCcccccccCCcccce
Q 002679 631 GSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEM 710 (893)
Q Consensus 631 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 710 (893)
+.+++|..|+|++|.+. .+|..++.+..|+.||+|.|+| ..+|..+..+..|+.+-.++|++....|+.+.++..|..
T Consensus 432 ~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrF-r~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~t 509 (565)
T KOG0472|consen 432 SQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRF-RMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTT 509 (565)
T ss_pred Hhhhcceeeecccchhh-hcchhhhhhhhhheeccccccc-ccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcce
Confidence 99999999999999887 6899999999999999999998 678999999999999999999998888888999999999
Q ss_pred eeCCCCcCCCCCchhhhcCCCCCEEEccCCccc
Q 002679 711 LNLSHNNLSDFIPRCFEEMNGLLYIDISYNELH 743 (893)
Q Consensus 711 L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~ 743 (893)
|||.+|.+.. +|..+++|++|+.|++++|+|.
T Consensus 510 LDL~nNdlq~-IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 510 LDLQNNDLQQ-IPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred eccCCCchhh-CChhhccccceeEEEecCCccC
Confidence 9999999985 6889999999999999999998
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=8.6e-38 Score=326.09 Aligned_cols=368 Identities=24% Similarity=0.255 Sum_probs=285.8
Q ss_pred CCCCEEECCCCCCCccCCccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCeecCCCccCCCCCCCCCCCCCCCCEEeC
Q 002679 107 PHLAYLDLQVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHL 186 (893)
Q Consensus 107 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 186 (893)
+.-+.||+++|.++.+-+..|.++++|+.+++.+|.++ .+|...+-..+|+.|+|.+|.++..-.+++..++.|+.|||
T Consensus 78 ~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDL 156 (873)
T KOG4194|consen 78 SQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDL 156 (873)
T ss_pred cceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhh
Confidence 35567999999988888888889999999999988888 78877666777899999998888777777888888888888
Q ss_pred CCccCCCCCCcccCCCCCCCEEEccCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEccCCCCCCC
Q 002679 187 FKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGS 266 (893)
Q Consensus 187 ~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ 266 (893)
+.|.++......|..-.++++|+|++|.|+......|..+.+|.+|.|+.|+++..-+..|.++++|+.|+|..|++.-.
T Consensus 157 SrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iriv 236 (873)
T KOG4194|consen 157 SRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIV 236 (873)
T ss_pred hhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeee
Confidence 88888877777788778888888888888877778888888888888888888866666777788888888888887633
Q ss_pred CCCcCCCCCCCCEEEeecCCCCCCCCccccCCCCCCeeecCCCcCCCCCCCCCCCCCCCCEEEccCCCCccccCCCCCCC
Q 002679 267 IPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNL 346 (893)
Q Consensus 267 ~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l 346 (893)
---.|..+++|+.|.|..|.+.......|..|.++++|+|+.|+++..-..++.+++.|+.|++++|.|...-++..+.+
T Consensus 237 e~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsft 316 (873)
T KOG4194|consen 237 EGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFT 316 (873)
T ss_pred hhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhc
Confidence 24456778888888888888877777777788888888888888877666777788888888888888877777777777
Q ss_pred CCCCeEEccCCcCCCCcccccCCCcccceEecccccCCCCCCccccccccCceeccCCccccccCCc---cccCCCccce
Q 002679 347 KSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPH---SLGNLTNLAI 423 (893)
Q Consensus 347 ~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~---~l~~l~~L~~ 423 (893)
++|+.|+|++|+++...+..|..+..|++|.|++|.+...-...|..+++|++|||++|.++..+.+ .|..++.|+.
T Consensus 317 qkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~Lrk 396 (873)
T KOG4194|consen 317 QKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRK 396 (873)
T ss_pred ccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhh
Confidence 8888888888888877777777777888888888877766666677777888888888877655432 3566777777
Q ss_pred eecccccccccCChhhhcccccccccCCCCCcCCCccccCCCCCccceEEccc
Q 002679 424 LYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYD 476 (893)
Q Consensus 424 L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~ 476 (893)
|.+.+|++......+|.+++.|++|||.+|.+..+.+.+|..+ .|+.|.+..
T Consensus 397 L~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 397 LRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNS 448 (873)
T ss_pred eeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcc
Confidence 7777777775555677777777777777777777777777666 666665543
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=2e-40 Score=331.45 Aligned_cols=489 Identities=32% Similarity=0.442 Sum_probs=320.0
Q ss_pred CCCCCEEEccCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEccCCCCCCCCCCcCCCCCCCCEEE
Q 002679 202 LSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLY 281 (893)
Q Consensus 202 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 281 (893)
-..|+.+.+++|.+. .+.+.+.++..|.+|++++|.+. ..|++++.+..++.++.++|++. .+|..++.+.+|+.++
T Consensus 44 qv~l~~lils~N~l~-~l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~ 120 (565)
T KOG0472|consen 44 QVDLQKLILSHNDLE-VLREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLD 120 (565)
T ss_pred hcchhhhhhccCchh-hccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhh
Confidence 344555555555555 22334566666777777777766 56666777777777777777776 5676777777777777
Q ss_pred eecCCCCCCCCccccCCCCCCeeecCCCcCCCCCCCCCCCCCCCCEEEccCCCCccccCCCCCCCCCCCeEEccCCcCCC
Q 002679 282 LRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSS 361 (893)
Q Consensus 282 L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~ 361 (893)
+++|.+. ..|+.++.+..|+.++..+|+++ ..|.++..+.+|..+++.+|++....|..+. ++.|++||...|.++
T Consensus 121 ~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~- 196 (565)
T KOG0472|consen 121 CSSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLE- 196 (565)
T ss_pred cccccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhh-
Confidence 7777776 45556777777777777777776 5667777777777777777777644443333 777777777777665
Q ss_pred CcccccCCCcccceEecccccCCCCCCccccccccCceeccCCccccccCCccc-cCCCccceeecccccccccCChhhh
Q 002679 362 SIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSL-GNLTNLAILYLHSNTLLGSIPREIG 440 (893)
Q Consensus 362 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l-~~l~~L~~L~L~~n~l~~~~~~~~~ 440 (893)
.+|..++.+.+|+.|++..|++. ..| .|.+|..|++++++.|.+. .+|... .+++++..||+.+|++. ..|..+.
T Consensus 197 tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~c 272 (565)
T KOG0472|consen 197 TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEIC 272 (565)
T ss_pred cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHH
Confidence 46667777778888888888776 445 6778888888888888777 444443 47778888888888877 6677777
Q ss_pred cccccccccCCCCCcCCCccccCCCCCccceEEcccCcCcccCCccccCCC---CCCEEec--CCCcCcCCCCCcCCCCC
Q 002679 441 NLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLV---KLTMLTL--SDNQLQGSIPNLRNLTN 515 (893)
Q Consensus 441 ~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~---~L~~L~L--s~n~l~~~~~~l~~~~~ 515 (893)
-+.+|+.||+++|.+++ .|..++++ +|+.|.+.+|.+..+-.+ +-+.. -|++|.= .+-.++.. .-..
T Consensus 273 lLrsL~rLDlSNN~is~-Lp~sLgnl-hL~~L~leGNPlrTiRr~-ii~~gT~~vLKyLrs~~~~dglS~s-----e~~~ 344 (565)
T KOG0472|consen 273 LLRSLERLDLSNNDISS-LPYSLGNL-HLKFLALEGNPLRTIRRE-IISKGTQEVLKYLRSKIKDDGLSQS-----EGGT 344 (565)
T ss_pred HhhhhhhhcccCCcccc-CCcccccc-eeeehhhcCCchHHHHHH-HHcccHHHHHHHHHHhhccCCCCCC-----cccc
Confidence 77788888888887775 45667777 777777777766532111 11110 0111100 00000000 0000
Q ss_pred CCEEEcCCCcCCCCCCccccCCCCCcEEeccCCcccccCCcCcCCC--CCccEEEccCCccCCCCCCCcCCCCCccE-EE
Q 002679 516 LIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKC--PNLGTFDVSVNNIIGSLPPEIGDSSQLHV-ID 592 (893)
Q Consensus 516 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~--~~L~~L~ls~n~l~~~~p~~l~~l~~L~~-L~ 592 (893)
-..-+ ...+..| ......+.+.|++++-+++......|... .-....+++.|++. .+|..+..++.+.+ ++
T Consensus 345 e~~~t----~~~~~~~-~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~ 418 (565)
T KOG0472|consen 345 ETAMT----LPSESFP-DIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLV 418 (565)
T ss_pred cccCC----CCCCccc-chhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHH
Confidence 00000 0000000 01122344555555555543322222211 22556666777665 45655555554443 34
Q ss_pred ccCCcccccCCccccCcccceeEEeccccccCCCcccccCCcccceecCCCCcccccccccccCCCCCCeeecccCcCCc
Q 002679 593 LSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQ 672 (893)
Q Consensus 593 Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 672 (893)
+++|.+ +.+|..++.+++|+.|++++|.+. .+|..++.+..|+.||+|.|++. .+|.++..+..++.+-.++|++..
T Consensus 419 lsnn~i-sfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~ 495 (565)
T KOG0472|consen 419 LSNNKI-SFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGS 495 (565)
T ss_pred hhcCcc-ccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccc
Confidence 444444 477777888888888888877664 56777888888999999999887 788888888889998888899888
Q ss_pred ccchhhhhccCccccccccccCCCcccccccCCcccceeeCCCCcCC
Q 002679 673 EIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLS 719 (893)
Q Consensus 673 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 719 (893)
..|..+.++..|.+|||.+|.+ ..||..++++++|++|+|++|++.
T Consensus 496 vd~~~l~nm~nL~tLDL~nNdl-q~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 496 VDPSGLKNMRNLTTLDLQNNDL-QQIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred cChHHhhhhhhcceeccCCCch-hhCChhhccccceeEEEecCCccC
Confidence 8888899999999999999998 678888999999999999999998
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=100.00 E-value=1.3e-35 Score=326.72 Aligned_cols=507 Identities=30% Similarity=0.357 Sum_probs=294.7
Q ss_pred EeCCCCCCCCCCCccccCCCCCCeecCCCccCCCCCCCCCCCCCCCCEEeCCCccCCCCCCcccCCCCCCCEEEccCCCC
Q 002679 136 LDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFL 215 (893)
Q Consensus 136 L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l 215 (893)
+|++..++. .||..+-.-..++.|+++.|.+....-+.+.+..+|+.||+++|++.
T Consensus 3 vd~s~~~l~-~ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~----------------------- 58 (1081)
T KOG0618|consen 3 VDASDEQLE-LIPEQILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS----------------------- 58 (1081)
T ss_pred cccccccCc-ccchhhccHHHHHhhhccccccccCchHHhhheeeeEEeeccccccc-----------------------
Confidence 566666666 66766655555777777777665322233334444555555555543
Q ss_pred CCCCCCCCCCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEccCCCCCCCCCCcCCCCCCCCEEEeecCCCCCCCCccc
Q 002679 216 KGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEI 295 (893)
Q Consensus 216 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l 295 (893)
..|..+..+.+|+.|+++.|.+. ..|....++.+|+++.|.+|.+. ..|..+..+.+|++|+++.|++. .+|..+
T Consensus 59 --~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i 133 (1081)
T KOG0618|consen 59 --SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVI 133 (1081)
T ss_pred --cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheeccchhh-cCchhHHhhhcccccccchhccC-CCchhH
Confidence 33344444555555555555544 34455555555556666555554 45555555666666666666554 455555
Q ss_pred cCCCCCCeeecCCCcCCCCCCCCCCCCCCCCEEEccCCCCccccCCCCCCCCCCCeEEccCCcCCCCcccccCCCcccce
Q 002679 296 GNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAA 375 (893)
Q Consensus 296 ~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~ 375 (893)
..++.++.++.++|..... ++... .+.+++..|.+.+.++..+..+.. .|++.+|.+. . ..+.++++|+.
T Consensus 134 ~~lt~~~~~~~s~N~~~~~----lg~~~-ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~--~dls~~~~l~~ 203 (1081)
T KOG0618|consen 134 EVLTAEEELAASNNEKIQR----LGQTS-IKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-V--LDLSNLANLEV 203 (1081)
T ss_pred HhhhHHHHHhhhcchhhhh----hcccc-chhhhhhhhhcccchhcchhhhhe--eeecccchhh-h--hhhhhccchhh
Confidence 5566666666666521111 11111 555556666665555555555544 5666666655 1 23455556666
Q ss_pred EecccccCCCCCCccccccccCceeccCCccccccCCccccCCCccceeecccccccccCChhhhcccccccccCCCCCc
Q 002679 376 FYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKL 455 (893)
Q Consensus 376 L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l 455 (893)
+....|++.... -.-++|+.|+.++|.++...+. ..-.+|+.++++.|+++ .+|+++..+.+|+.++..+|++
T Consensus 204 l~c~rn~ls~l~----~~g~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l 276 (1081)
T KOG0618|consen 204 LHCERNQLSELE----ISGPSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRL 276 (1081)
T ss_pred hhhhhcccceEE----ecCcchheeeeccCcceeeccc--cccccceeeecchhhhh-cchHHHHhcccceEecccchhH
Confidence 666665554221 1124555666666655522111 11234555555555555 3345555555555555555555
Q ss_pred CCCccccCCCCCccceEEcccCcCcccCCccccCCCCCCEEecCCCcCcCCCCCcCCCCCCCEEEcCCCcCCCCCCcccc
Q 002679 456 SNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNISESFG 535 (893)
Q Consensus 456 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~ 535 (893)
+ .+|..+...++|+.|.+.+|.+....|.....++|++|++..|.+....+..+.
T Consensus 277 ~-------------------------~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~ 331 (1081)
T KOG0618|consen 277 V-------------------------ALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLA 331 (1081)
T ss_pred H-------------------------hhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHh
Confidence 2 223333333344444444444443333444555566666666555443332222
Q ss_pred CCCC-CcEEeccCCcccccCCcCcCCCCCccEEEccCCccCCCCCCCcCCCCCccEEEccCCcccccCCccccCccccee
Q 002679 536 IHPK-LTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIK 614 (893)
Q Consensus 536 ~~~~-L~~L~ls~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 614 (893)
.... +..+..+.|++.... ...-...+.|+.|.+.+|.+++..-..+.+...|+.
T Consensus 332 v~~~~l~~ln~s~n~l~~lp------------------------~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKV 387 (1081)
T KOG0618|consen 332 VLNASLNTLNVSSNKLSTLP------------------------SYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKV 387 (1081)
T ss_pred hhhHHHHHHhhhhccccccc------------------------cccchhhHHHHHHHHhcCcccccchhhhccccceee
Confidence 2222 444444444443211 111122345666777777776665556677777777
Q ss_pred EEeccccccCCCcccccCCcccceecCCCCcccccccccccCCCCCCeeecccCcCCcccchhhhhccCccccccccccC
Q 002679 615 LILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFL 694 (893)
Q Consensus 615 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 694 (893)
|+|++|++.......+.++..|++|+||+|+++ .+|.++.++..|++|...+|++. ..| ++..++.|+.+|+|.|.+
T Consensus 388 LhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L 464 (1081)
T KOG0618|consen 388 LHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNL 464 (1081)
T ss_pred eeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchh
Confidence 777777777666677788888999999999988 57888999999999999988874 344 888899999999999998
Q ss_pred CCcccccccCCcccceeeCCCCcCCCCCchhhhcCCCCCEEEccCC
Q 002679 695 GKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYN 740 (893)
Q Consensus 695 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N 740 (893)
+...-..-..-+.|++|||++|.-....-..|..+.++..+++.-|
T Consensus 465 ~~~~l~~~~p~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 465 SEVTLPEALPSPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred hhhhhhhhCCCcccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence 7654333223389999999999866666677888888888888877
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.98 E-value=3.8e-35 Score=323.00 Aligned_cols=322 Identities=34% Similarity=0.382 Sum_probs=183.0
Q ss_pred EECCCCCCCccCCccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCeecCCCccCCCCCCCCCCCCCCCCEEeCCCccC
Q 002679 112 LDLQVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQL 191 (893)
Q Consensus 112 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 191 (893)
+|++...+. .||..+-.-..++.|+++.|.+-...-+.+.+..+|+.||+++|.+. ..|..+..+..|+.|.++.|.+
T Consensus 3 vd~s~~~l~-~ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i 80 (1081)
T KOG0618|consen 3 VDASDEQLE-LIPEQILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYI 80 (1081)
T ss_pred cccccccCc-ccchhhccHHHHHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhH
Confidence 566666664 36666666667999999999876333345566777999999999887 8899999999999999999887
Q ss_pred CCCCCcccCCCCCCCEEEccCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEccCCCCCCCCCCcC
Q 002679 192 SGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFL 271 (893)
Q Consensus 192 ~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l 271 (893)
.. .|.+..++.+|+++.|..|.+. ..|..+..+.+|+.|++++|.+. .+|..+..++.++.+..++|..... +
T Consensus 81 ~~-vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~----l 153 (1081)
T KOG0618|consen 81 RS-VPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQR----L 153 (1081)
T ss_pred hh-Cchhhhhhhcchhheeccchhh-cCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhh----h
Confidence 63 3466666677777777666655 45556666666666666666654 4555555566666666666521111 1
Q ss_pred CCCCCCCEEEeecCCCCCCCCccccCCCCCCeeecCCCcCCCCCCCCCCCCCCCCEEEccCCCCccccCCCCCCCCCCCe
Q 002679 272 GNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSG 351 (893)
Q Consensus 272 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 351 (893)
+... ++.+++..|.+.+.++..+..++. .|+|.+|.+. -..+..+++|+.+....|.+.... -.-++|+.
T Consensus 154 g~~~-ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~---~~dls~~~~l~~l~c~rn~ls~l~----~~g~~l~~ 223 (1081)
T KOG0618|consen 154 GQTS-IKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME---VLDLSNLANLEVLHCERNQLSELE----ISGPSLTA 223 (1081)
T ss_pred cccc-chhhhhhhhhcccchhcchhhhhe--eeecccchhh---hhhhhhccchhhhhhhhcccceEE----ecCcchhe
Confidence 1111 555555555555555555554444 4566555553 123344555555555555443211 11244555
Q ss_pred EEccCCcCCCCcccccCCCcccceEecccccCCCCCCccccccccCceeccCCccccccCCccccCCCccceeecccccc
Q 002679 352 LELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTL 431 (893)
Q Consensus 352 L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l 431 (893)
|+.++|.++...+.. .-.+|+++++++|+++ .+|++++.|.+|+.++..+|+++ .+|..+....+|+.|.+..|.+
T Consensus 224 L~a~~n~l~~~~~~p--~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel 299 (1081)
T KOG0618|consen 224 LYADHNPLTTLDVHP--VPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNEL 299 (1081)
T ss_pred eeeccCcceeecccc--ccccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhh
Confidence 555555554222111 1134455555555554 23355555555555555555553 3344444444455555555544
Q ss_pred cccCChhhhcccccccccCCCCCcCC
Q 002679 432 LGSIPREIGNLKSLFELQLGDNKLSN 457 (893)
Q Consensus 432 ~~~~~~~~~~~~~L~~L~Ls~n~l~~ 457 (893)
. -+|....+.+.|++|+|..|++..
T Consensus 300 ~-yip~~le~~~sL~tLdL~~N~L~~ 324 (1081)
T KOG0618|consen 300 E-YIPPFLEGLKSLRTLDLQSNNLPS 324 (1081)
T ss_pred h-hCCCcccccceeeeeeehhccccc
Confidence 4 333344444445555555444443
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=4e-33 Score=292.74 Aligned_cols=363 Identities=27% Similarity=0.424 Sum_probs=179.0
Q ss_pred CCCCCEEECCCCCCCc-cCCccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCeecCCCccCCCCCCCCCCCCCCCCEE
Q 002679 106 FPHLAYLDLQVNQIFG-IIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEAL 184 (893)
Q Consensus 106 l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 184 (893)
++.+|-.|+++|.|+| ..|.....+++++.|.|...++. .+|+.++.|.+|++|.+++|++. .+-..++.|+.|+.+
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv 83 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSV 83 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHH
Confidence 3344445555555552 35555555566666666555554 55555666666666666666554 333445555555555
Q ss_pred eCCCccCC-CCCCcccCCCCCCCEEEccCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEccCCCC
Q 002679 185 HLFKNQLS-GPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKL 263 (893)
Q Consensus 185 ~L~~n~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l 263 (893)
++..|++. ..+|..+..+..|+.|||++|++. ..|..+..-+++-+|+|++|+|..+....+-+++.|-.||||+|++
T Consensus 84 ~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrL 162 (1255)
T KOG0444|consen 84 IVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRL 162 (1255)
T ss_pred hhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchh
Confidence 55555542 234555555555555555555554 4445555555555555555555522222334555555555555555
Q ss_pred CCCCCCcCCCCCCCCEEEeecCCCCCCCCccccCCCCCCeeecCCCcCC-CCCCCCCCCCCCCCEEEccCCCCccccCCC
Q 002679 264 CGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLN-GSIPLSLGNLTNLDTLYLYTNSLSGSIPSE 342 (893)
Q Consensus 264 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~ 342 (893)
. .+|..+..+..|++|+|++|.+.-..-..+..+++|++|.+++.+-+ ..+|.++..+.+|..++++.|.+. ..|+.
T Consensus 163 e-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPec 240 (1255)
T KOG0444|consen 163 E-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPEC 240 (1255)
T ss_pred h-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHH
Confidence 4 34444455555555555555444322222333445555555544322 234555555555555555555554 44555
Q ss_pred CCCCCCCCeEEccCCcCCCCcccccCCCcccceEecccccCCCCCCccccccccCceeccCCccccc-cCCccccCCCcc
Q 002679 343 IGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSG-SIPHSLGNLTNL 421 (893)
Q Consensus 343 l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~~~~l~~l~~L 421 (893)
+.++++|+.|++|+|+++.. ....+...+|++|+++.|+++ .+|+++..+++|+.|.+.+|+++- -+|..++.+.+|
T Consensus 241 ly~l~~LrrLNLS~N~iteL-~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~L 318 (1255)
T KOG0444|consen 241 LYKLRNLRRLNLSGNKITEL-NMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQL 318 (1255)
T ss_pred HhhhhhhheeccCcCceeee-eccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhh
Confidence 55555555555555555421 122233344455555555554 444445555555555555544431 234444444444
Q ss_pred ceeecccccccccCChhhhcccccccccCCCCCcCCCccccCCCCCccceEEcccC
Q 002679 422 AILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDN 477 (893)
Q Consensus 422 ~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n 477 (893)
+.+..++|.+. ..|+.+..|..|+.|.|+.|++.. .|.++.-++.|+.|++..|
T Consensus 319 evf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLiT-LPeaIHlL~~l~vLDlreN 372 (1255)
T KOG0444|consen 319 EVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLIT-LPEAIHLLPDLKVLDLREN 372 (1255)
T ss_pred HHHHhhccccc-cCchhhhhhHHHHHhcccccceee-chhhhhhcCCcceeeccCC
Confidence 44444444443 444444444444444444444432 3333444444444444444
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=3.4e-33 Score=293.28 Aligned_cols=383 Identities=26% Similarity=0.385 Sum_probs=331.0
Q ss_pred CCEEEEEcCCCCCccc-cCCccCCCCCCCCEEECCCCCCCccCCccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCee
Q 002679 82 GRVNSINLTNVGLKGT-LHDFSFSSFPHLAYLDLQVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFL 160 (893)
Q Consensus 82 ~~v~~l~l~~~~l~g~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L 160 (893)
..|+++|++++.++|. +| .+...++.++.|.|...++.. +|+.++.|.+|++|.+++|++. .+-..++.|+.||.+
T Consensus 7 pFVrGvDfsgNDFsg~~FP-~~v~qMt~~~WLkLnrt~L~~-vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv 83 (1255)
T KOG0444|consen 7 PFVRGVDFSGNDFSGDRFP-HDVEQMTQMTWLKLNRTKLEQ-VPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSV 83 (1255)
T ss_pred ceeecccccCCcCCCCcCc-hhHHHhhheeEEEechhhhhh-ChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHH
Confidence 4689999999999964 55 788899999999999988854 8999999999999999999987 556778899999999
Q ss_pred cCCCccCC-CCCCCCCCCCCCCCEEeCCCccCCCCCCcccCCCCCCCEEEccCCCCCCCCCCCCCCCCCCCEEEccCCcC
Q 002679 161 YLSANQFS-GRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSL 239 (893)
Q Consensus 161 ~L~~n~l~-~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 239 (893)
++.+|++. .-+|..+.++..|..|||++|++. ..|..+..-+++-.|+|++|+|.......+.+++.|-.|||++|++
T Consensus 84 ~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrL 162 (1255)
T KOG0444|consen 84 IVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRL 162 (1255)
T ss_pred hhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchh
Confidence 99999985 468899999999999999999997 5688888999999999999999977667788999999999999999
Q ss_pred CCCCCccccCCCCCCEEEccCCCCCCCCCCcCCCCCCCCEEEeecCCCC-CCCCccccCCCCCCeeecCCCcCCCCCCCC
Q 002679 240 SGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFS-SSIPSEIGNLKSLSILELGENRLNGSIPLS 318 (893)
Q Consensus 240 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~ 318 (893)
. .+|+.+..+..|+.|+|++|.+...--..+..+++|++|.+++.+-+ ..+|.++..+.+|..+|+|.|.+. ..|+.
T Consensus 163 e-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPec 240 (1255)
T KOG0444|consen 163 E-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPEC 240 (1255)
T ss_pred h-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHH
Confidence 8 67888999999999999999886433334556788899999987643 468888999999999999999998 78999
Q ss_pred CCCCCCCCEEEccCCCCccccCCCCCCCCCCCeEEccCCcCCCCcccccCCCcccceEecccccCCC-CCCccccccccC
Q 002679 319 LGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSG-SIPSEIGNLKSL 397 (893)
Q Consensus 319 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L 397 (893)
+.++++|+.|+|++|.++ .+....+...+|++|++|.|+++ ..|..+..+++|+.|++.+|+++- -+|..++.+.+|
T Consensus 241 ly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~L 318 (1255)
T KOG0444|consen 241 LYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQL 318 (1255)
T ss_pred HhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhh
Confidence 999999999999999998 44445667789999999999998 578999999999999999998863 579999999999
Q ss_pred ceeccCCccccccCCccccCCCccceeecccccccccCChhhhcccccccccCCCCCcCCCccccCCCCCccceEEc
Q 002679 398 SNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLAL 474 (893)
Q Consensus 398 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L 474 (893)
+.+..++|.+. ..|+.++.|..|+.|.|+.|.+. .+|+.+.-++.|+.||+..|.-.-..|..-..-+.++.-++
T Consensus 319 evf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPPKP~da~~~lefYNI 393 (1255)
T KOG0444|consen 319 EVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPPKPNDARKKLEFYNI 393 (1255)
T ss_pred HHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCccCCCCcchhhhcceeeec
Confidence 99999999997 88999999999999999999998 78999999999999999999654444433222244444333
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.92 E-value=2.5e-23 Score=258.87 Aligned_cols=364 Identities=22% Similarity=0.259 Sum_probs=214.2
Q ss_pred CCEEEEEcCCCCCc-cccCCccCCCCCCCCEEECCCCCC------CccCCccccCCC-CCCEEeCCCCCCCCCCCccccC
Q 002679 82 GRVNSINLTNVGLK-GTLHDFSFSSFPHLAYLDLQVNQI------FGIIPPQIGNIS-KLKYLDLSSNSFSGTIPPQIGN 153 (893)
Q Consensus 82 ~~v~~l~l~~~~l~-g~~~~~~~~~l~~L~~L~L~~n~l------~~~~~~~~~~l~-~L~~L~Ls~n~~~~~~p~~l~~ 153 (893)
.+|.++.+.-..+. -.++..+|.++++|+.|.+..+.+ ...+|..|..++ +|+.|++.++.+. .+|..+ .
T Consensus 532 ~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~ 609 (1153)
T PLN03210 532 KKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-R 609 (1153)
T ss_pred ceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-C
Confidence 45666655433332 123445788889999988865532 334666666664 5888888888776 677776 4
Q ss_pred CCCCCeecCCCccCCCCCCCCCCCCCCCCEEeCCCccCCCCCCcccCCCCCCCEEEccCCCCCCCCCCCCCCCCCCCEEE
Q 002679 154 LSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILY 233 (893)
Q Consensus 154 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 233 (893)
..+|++|++++|.+. .+|..+..+++|+.|+++++.....+|. +..+++|++|++++|.....+|..++++++|+.|+
T Consensus 610 ~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~ 687 (1153)
T PLN03210 610 PENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLD 687 (1153)
T ss_pred ccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEe
Confidence 678888888888876 5777778888888888887765556663 67778888888888776667777778888888888
Q ss_pred ccCCcCCCCCCccccCCCCCCEEEccCCCCCCCCCCcCCCCCCCCEEEeecCCCCCCCCccccCCCCCCeeecCCCcCCC
Q 002679 234 LHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNG 313 (893)
Q Consensus 234 L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~ 313 (893)
+++|..-..+|..+ ++++|+.|++++|...+.+|.. ..+|++|++++|.+. .+|..+ .+++|+.|++.++....
T Consensus 688 L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~ 761 (1153)
T PLN03210 688 MSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEK 761 (1153)
T ss_pred CCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-cccccccccccccchhh
Confidence 88776555666554 5777788888777655455532 346777777777765 445443 45666666666533210
Q ss_pred CCCCCCCCCCCCCEEEccCCCCccccCCCCCCCCCCCeEEccCCcCCCCcccccCCCcccceEecccccCCCCCCccccc
Q 002679 314 SIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGN 393 (893)
Q Consensus 314 ~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~ 393 (893)
+...+. ...+......++|+.|++++|...+.+|..++++++|+.|++++|...+.+|..+ +
T Consensus 762 -l~~~~~----------------~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~ 823 (1153)
T PLN03210 762 -LWERVQ----------------PLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-N 823 (1153)
T ss_pred -cccccc----------------ccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-C
Confidence 000000 0001111122344444444444444444444444444444444443333344333 3
Q ss_pred cccCceeccCCccccccCCccccCCCccceeecccccccccCChhhhcccccccccCCCCCcCCCccccCCCCCccceEE
Q 002679 394 LKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLA 473 (893)
Q Consensus 394 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ 473 (893)
+++|+.|++++|.....+|.. .++|+.|++++|.++ .+|..+..+++|+.|++++|+-...++..+..+++|+.++
T Consensus 824 L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~ 899 (1153)
T PLN03210 824 LESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVD 899 (1153)
T ss_pred ccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeee
Confidence 455555555554333333322 234555555555554 3455555556666666655433333444555556666666
Q ss_pred cccC
Q 002679 474 LYDN 477 (893)
Q Consensus 474 L~~n 477 (893)
+++|
T Consensus 900 l~~C 903 (1153)
T PLN03210 900 FSDC 903 (1153)
T ss_pred cCCC
Confidence 5554
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.91 E-value=1.5e-22 Score=251.97 Aligned_cols=342 Identities=21% Similarity=0.276 Sum_probs=218.8
Q ss_pred CccccCCCCCCEEeCCCCC------CCCCCCccccCCC-CCCeecCCCccCCCCCCCCCCCCCCCCEEeCCCccCCCCCC
Q 002679 124 PPQIGNISKLKYLDLSSNS------FSGTIPPQIGNLS-MLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIP 196 (893)
Q Consensus 124 ~~~~~~l~~L~~L~Ls~n~------~~~~~p~~l~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p 196 (893)
+.+|.++++|++|.+..+. +...+|..+..++ +|+.|++.++.+. .+|..+ ...+|++|++.+|++.. ++
T Consensus 551 ~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~~-L~ 627 (1153)
T PLN03210 551 ENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLEK-LW 627 (1153)
T ss_pred HHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCccccc-cc
Confidence 3456777777777775543 2234555555543 4777777766664 556555 35666666666666542 34
Q ss_pred cccCCCCCCCEEEccCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEccCCCCCCCCCCcCCCCCC
Q 002679 197 HEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTN 276 (893)
Q Consensus 197 ~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~ 276 (893)
..+..+++|++|+++++.....+|. ++.+++|++|++++|.....+|..+.++++|+.|++++|..-+.+|..+ ++++
T Consensus 628 ~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~s 705 (1153)
T PLN03210 628 DGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKS 705 (1153)
T ss_pred cccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCC
Confidence 4555566666666665544334442 5555566666665555444555555555555555555544333444433 4455
Q ss_pred CCEEEeecCCCCCCCCccccCCCCCCeeecCCCcCCCCCCCCCCCCCCCCEEEccCCCCccccCCCCCCCCCCCeEEccC
Q 002679 277 LDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELAD 356 (893)
Q Consensus 277 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~ 356 (893)
|+.|++++|...+.+|. . ..+|++|++++|.+. .+|..+ .+++|+.|++.+
T Consensus 706 L~~L~Lsgc~~L~~~p~------------------------~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~ 756 (1153)
T PLN03210 706 LYRLNLSGCSRLKSFPD------------------------I---STNISWLDLDETAIE-EFPSNL-RLENLDELILCE 756 (1153)
T ss_pred CCEEeCCCCCCcccccc------------------------c---cCCcCeeecCCCccc-cccccc-cccccccccccc
Confidence 55555555543333332 1 234444555554443 233332 344555555544
Q ss_pred CcC-------CCCcccccCCCcccceEecccccCCCCCCccccccccCceeccCCccccccCCccccCCCccceeecccc
Q 002679 357 NEL-------SSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSN 429 (893)
Q Consensus 357 n~l-------~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n 429 (893)
+.. ....+......++|+.|++++|...+.+|.+++++++|+.|++++|...+.+|..+ ++++|+.|++++|
T Consensus 757 ~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c 835 (1153)
T PLN03210 757 MKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGC 835 (1153)
T ss_pred cchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCC
Confidence 221 11122223345789999999998888899999999999999999987666777765 7899999999998
Q ss_pred cccccCChhhhcccccccccCCCCCcCCCccccCCCCCccceEEcccCcCcccCCccccCCCCCCEEecCCCcCc
Q 002679 430 TLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQ 504 (893)
Q Consensus 430 ~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 504 (893)
.....+|.. ..+|+.|++++|.++. +|.++..+++|+.|++++|.--..+|..+..+++|+.+++++|.-.
T Consensus 836 ~~L~~~p~~---~~nL~~L~Ls~n~i~~-iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L 906 (1153)
T PLN03210 836 SRLRTFPDI---STNISDLNLSRTGIEE-VPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGAL 906 (1153)
T ss_pred Ccccccccc---ccccCEeECCCCCCcc-ChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCccc
Confidence 776566543 3679999999999974 6778999999999999997655567778889999999999999744
No 13
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.87 E-value=2.2e-24 Score=216.76 Aligned_cols=276 Identities=21% Similarity=0.252 Sum_probs=170.3
Q ss_pred CCCEEEeecCCCCCCCCccccCCCCCCeeecCCCcCCCCCCCCCCCCCCCCEEEccC-CCCccccCCCCCCCCCCCeEEc
Q 002679 276 NLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYT-NSLSGSIPSEIGNLKSLSGLEL 354 (893)
Q Consensus 276 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~-n~l~~~~~~~l~~l~~L~~L~l 354 (893)
.-..++|..|+|+.+.|.+|+.+++|+.|||++|.++.+-|.+|..+++|..|-+.+ |+|+......|+++..|+.|.+
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 455667777777766666777777777777777777766677777777766665554 6666555556777777777777
Q ss_pred cCCcCCCCcccccCCCcccceEecccccCCCCCCccccccccCceeccCCcccc------------ccCCccccCCCccc
Q 002679 355 ADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLS------------GSIPHSLGNLTNLA 422 (893)
Q Consensus 355 s~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~------------~~~~~~l~~l~~L~ 422 (893)
.-|++.......|..++++..|.+.+|.+..+--..|..+..++.+.+..|.+. ...|..++......
T Consensus 148 Nan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~ 227 (498)
T KOG4237|consen 148 NANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVS 227 (498)
T ss_pred ChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecc
Confidence 777777666677777777777777777776444446777777777777766532 11222233333333
Q ss_pred eeecccccccccCChhhhcc-cccccccCCCCCcCC-CccccCCCCCccceEEcccCcCcccCCccccCCCCCCEEecCC
Q 002679 423 ILYLHSNTLLGSIPREIGNL-KSLFELQLGDNKLSN-SISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSD 500 (893)
Q Consensus 423 ~L~L~~n~l~~~~~~~~~~~-~~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 500 (893)
-..+.+.++....+..+... ..+..--.+.+...+ -....|..+++|+.|++++|+++++.+.+|.+...+++|.|..
T Consensus 228 p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~ 307 (498)
T KOG4237|consen 228 PYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTR 307 (498)
T ss_pred hHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCc
Confidence 33333333332222222211 111111111222222 2233466777777777777777777777777777777777777
Q ss_pred CcCcCCCC-CcCCCCCCCEEEcCCCcCCCCCCccccCCCCCcEEeccCCccc
Q 002679 501 NQLQGSIP-NLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFY 551 (893)
Q Consensus 501 n~l~~~~~-~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~ 551 (893)
|++...-. .|.++..|+.|++.+|+|+...|.+|.....|..|.+-.|.+.
T Consensus 308 N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 308 NKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN 359 (498)
T ss_pred chHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCccc
Confidence 77754332 4667777777777777777777777777777777777766653
No 14
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.86 E-value=4.5e-24 Score=214.52 Aligned_cols=426 Identities=25% Similarity=0.251 Sum_probs=233.5
Q ss_pred CCCEEEccCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEccC-CCCCCCCCCcCCCCCCCCEEEe
Q 002679 204 SLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGN-NKLCGSIPLFLGNLTNLDTLYL 282 (893)
Q Consensus 204 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~-n~l~~~~p~~l~~l~~L~~L~L 282 (893)
.-.+++|..|+|+...+.+|+.+++|+.|||++|.|+.+-|++|.++++|..|-+.+ |+|+......|+++..|+.|.+
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 445677777777777777777777777777777777777777777777666655444 6676544456667777777777
Q ss_pred ecCCCCCCCCccccCCCCCCeeecCCCcCCCCCCCCCCCCCCCCEEEccCCCCccccCCCCCCCCCCCeEEccCCcCCCC
Q 002679 283 RNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSS 362 (893)
Q Consensus 283 ~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~ 362 (893)
.-|++.-...+.|..+++|..|.+.+|.+...--..|..+..++.+.+..|.+-. ..+++.+..... .
T Consensus 148 Nan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~ic-----dCnL~wla~~~a-------~ 215 (498)
T KOG4237|consen 148 NANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFIC-----DCNLPWLADDLA-------M 215 (498)
T ss_pred ChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcccc-----ccccchhhhHHh-------h
Confidence 7777666666666777777777777776663333366666666666666655321 122222211100 1
Q ss_pred cccccCCCcccceEecccccCCCCCCcccccc-ccCceeccCCccccccCC-ccccCCCccceeecccccccccCChhhh
Q 002679 363 IPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNL-KSLSNLDLSENKLSGSIP-HSLGNLTNLAILYLHSNTLLGSIPREIG 440 (893)
Q Consensus 363 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l-~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~ 440 (893)
.|..++...-..-..+.+.++...-+..|... ..+..=-.+.+...+..| ..|..+++|+.|++++|++++.-+.+|.
T Consensus 216 ~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe 295 (498)
T KOG4237|consen 216 NPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFE 295 (498)
T ss_pred chhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhc
Confidence 11222222222233333444433322222211 111111112222222333 3467778888888888888877777788
Q ss_pred cccccccccCCCCCcCCCccccCCCCCccceEEcccCcCcccCCccccCCCCCCEEecCCCcCcCCCC--CcCCCCCCCE
Q 002679 441 NLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIP--NLRNLTNLIR 518 (893)
Q Consensus 441 ~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~l~~~~~L~~ 518 (893)
+...+++|.|..|++.......|.++..|+.|+|.+|+++...|..|..+.+|.+|++-.|++.-.-. +++..
T Consensus 296 ~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~W----- 370 (498)
T KOG4237|consen 296 GAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEW----- 370 (498)
T ss_pred chhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHH-----
Confidence 88888888888888777777777788888888888888888888888888888888877776642100 11000
Q ss_pred EEcCCCcCCCCCCccccCCCCCcEEeccCCcccccCCcCcCCCCCccEEEccCCccCCCCCCCcCCCCCccEEEccCCcc
Q 002679 519 LRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHI 598 (893)
Q Consensus 519 L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l 598 (893)
+......+..+ .+....++.+++++..+...- |..=++.. +.-++.-| ..++-+.+..=-.|+.
T Consensus 371 --lr~~~~~~~~~--Cq~p~~~~~~~~~dv~~~~~~------c~~~ee~~---~~~s~~cP---~~c~c~~tVvRcSnk~ 434 (498)
T KOG4237|consen 371 --LRKKSVVGNPR--CQSPGFVRQIPISDVAFGDFR------CGGPEELG---CLTSSPCP---PPCTCLDTVVRCSNKL 434 (498)
T ss_pred --HhhCCCCCCCC--CCCCchhccccchhccccccc------cCCccccC---CCCCCCCC---CCcchhhhhHhhcccc
Confidence 01111111111 112223444444444332110 00000000 00000111 1122222211111222
Q ss_pred cccCCccccCcccceeEEeccccccCCCcccccCCcccceecCCCCcccccccccccCCCCCCeeecccC
Q 002679 599 IGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTN 668 (893)
Q Consensus 599 ~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N 668 (893)
...+|..+. ....++++.+|.++.+..+ .+.+| .+|+++|+++..-...|.++++|.+|-||+|
T Consensus 435 lk~lp~~iP--~d~telyl~gn~~~~vp~~---~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 435 LKLLPRGIP--VDVTELYLDGNAITSVPDE---LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred hhhcCCCCC--chhHHHhcccchhcccCHH---HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 223443332 2345677777777654433 56667 7888888887776778888888888888876
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.83 E-value=4.3e-20 Score=212.49 Aligned_cols=266 Identities=26% Similarity=0.336 Sum_probs=143.8
Q ss_pred cCceeccCCccccccCCccccCCCccceeecccccccccCChhhhcccccccccCCCCCcCCCccccCCCCCccceEEcc
Q 002679 396 SLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALY 475 (893)
Q Consensus 396 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~ 475 (893)
.-..|+++++.++ .+|..+. ++|+.|++.+|+++. +|. ..++|++|++++|+++.. |. ..++|+.|+++
T Consensus 202 ~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~LtsL-P~---lp~sL~~L~Ls 270 (788)
T PRK15387 202 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTSL-PV---LPPGLLELSIF 270 (788)
T ss_pred CCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccCcc-cC---cccccceeecc
Confidence 4557788888887 5666554 367888888887773 443 245677777777776643 22 13456666666
Q ss_pred cCcCcccCCccccCCCCCCEEecCCCcCcCCCCCcCCCCCCCEEEcCCCcCCCCCCccccCCCCCcEEeccCCcccccCC
Q 002679 476 DNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQIS 555 (893)
Q Consensus 476 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~ 555 (893)
+|.++. +|. ...+|+.|++++|+++.. |. ..++|+.|++++|++++. |. ...+|+
T Consensus 271 ~N~L~~-Lp~---lp~~L~~L~Ls~N~Lt~L-P~--~p~~L~~LdLS~N~L~~L-p~---lp~~L~-------------- 325 (788)
T PRK15387 271 SNPLTH-LPA---LPSGLCKLWIFGNQLTSL-PV--LPPGLQELSVSDNQLASL-PA---LPSELC-------------- 325 (788)
T ss_pred CCchhh-hhh---chhhcCEEECcCCccccc-cc--cccccceeECCCCccccC-CC---Cccccc--------------
Confidence 666553 222 123455556666555532 21 123455555555554432 11 112344
Q ss_pred cCcCCCCCccEEEccCCccCCCCCCCcCCCCCccEEEccCCcccccCCccccCcccceeEEeccccccCCCcccccCCcc
Q 002679 556 SDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQ 635 (893)
Q Consensus 556 ~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 635 (893)
.|++++|.+++ +|.. ..+|+.|++++|++++ +|.. .++|+.|++++|++.+ +|.. ..+
T Consensus 326 ----------~L~Ls~N~L~~-LP~l---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l---~~~ 383 (788)
T PRK15387 326 ----------KLWAYNNQLTS-LPTL---PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL---PSG 383 (788)
T ss_pred ----------ccccccCcccc-cccc---ccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Cccc---ccc
Confidence 44444444432 2221 1245555555555542 3321 2345555555555553 3321 245
Q ss_pred cceecCCCCcccccccccccCCCCCCeeecccCcCCcccchhhhhccCccccccccccCCCcccccccCCcccceeeCCC
Q 002679 636 LEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSH 715 (893)
Q Consensus 636 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 715 (893)
|+.|++++|++++ +|.. .++|+.|++++|++++ +|.. ..+|+.|++++|+++ .+|..+.++++|+.|+|++
T Consensus 384 L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~ 454 (788)
T PRK15387 384 LKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEG 454 (788)
T ss_pred cceEEecCCcccC-CCCc---ccCCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCC
Confidence 6666666666663 3432 2456666777776654 4432 234566777777764 4566666777777777777
Q ss_pred CcCCCCCchhhhc
Q 002679 716 NNLSDFIPRCFEE 728 (893)
Q Consensus 716 N~l~~~~p~~l~~ 728 (893)
|+|++.+|..+..
T Consensus 455 N~Ls~~~~~~L~~ 467 (788)
T PRK15387 455 NPLSERTLQALRE 467 (788)
T ss_pred CCCCchHHHHHHH
Confidence 7777766666533
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.82 E-value=1.5e-19 Score=207.95 Aligned_cols=265 Identities=25% Similarity=0.406 Sum_probs=150.8
Q ss_pred CCEEeCCCCCCCCCCCccccCCCCCCeecCCCccCCCCCCCCCCCCCCCCEEeCCCccCCCCCCcccCCCCCCCEEEccC
Q 002679 133 LKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTS 212 (893)
Q Consensus 133 L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~ 212 (893)
-..|+|+.+.++ .+|..+. .+|+.|++++|+++ .+|.. .++|++|++++|+++.. |.. .++|++|++++
T Consensus 203 ~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~l---p~~Lk~LdLs~N~LtsL-P~l---p~sL~~L~Ls~ 271 (788)
T PRK15387 203 NAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPAL---PPELRTLEVSGNQLTSL-PVL---PPGLLELSIFS 271 (788)
T ss_pred CcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCCC---CCCCcEEEecCCccCcc-cCc---ccccceeeccC
Confidence 344444444444 3444332 24445555554444 23321 24455555555555432 221 23455555555
Q ss_pred CCCCCCCCCCCCCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEccCCCCCCCCCCcCCCCCCCCEEEeecCCCCCCCC
Q 002679 213 NFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIP 292 (893)
Q Consensus 213 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~ 292 (893)
|.++. +|.. .++|+.|++++|+++. +|.. .++|+.|++++|++++ +|.. ..+|+.|++++|++++ +|
T Consensus 272 N~L~~-Lp~l---p~~L~~L~Ls~N~Lt~-LP~~---p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~-LP 338 (788)
T PRK15387 272 NPLTH-LPAL---PSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTS-LP 338 (788)
T ss_pred Cchhh-hhhc---hhhcCEEECcCCcccc-cccc---ccccceeECCCCcccc-CCCC---cccccccccccCcccc-cc
Confidence 55542 2221 1345566666666652 3331 2456666666666663 3332 2346666666666653 33
Q ss_pred ccccCCCCCCeeecCCCcCCCCCCCCCCCCCCCCEEEccCCCCccccCCCCCCCCCCCeEEccCCcCCCCcccccCCCcc
Q 002679 293 SEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTN 372 (893)
Q Consensus 293 ~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~ 372 (893)
.. ..+|+.|++++|++++ +|.. .++|+.|++++|.++. +|.. ..+|+.|++++|.+++ +|.. .++
T Consensus 339 ~l---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt~-LP~l---~s~ 403 (788)
T PRK15387 339 TL---PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTS-LPVL---PSE 403 (788)
T ss_pred cc---ccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Cccc---ccccceEEecCCcccC-CCCc---ccC
Confidence 31 1356777777777663 4432 2456667777777763 4432 2467777777777774 3332 256
Q ss_pred cceEecccccCCCCCCccccccccCceeccCCccccccCCccccCCCccceeecccccccccCChhhhc
Q 002679 373 LAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGN 441 (893)
Q Consensus 373 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~ 441 (893)
|+.|++++|+++. +|.. ..+|+.|++++|+++ .+|..+.++++|+.|++++|++++..+..+..
T Consensus 404 L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~ 467 (788)
T PRK15387 404 LKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALRE 467 (788)
T ss_pred CCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHH
Confidence 7788888888774 5543 246778888888887 67888888888888888888888776665533
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.81 E-value=2.7e-19 Score=207.58 Aligned_cols=246 Identities=26% Similarity=0.440 Sum_probs=142.7
Q ss_pred CCCEEeCCCCCCCCCCCccccCCCCCCeecCCCccCCCCCCCCCCCCCCCCEEeCCCccCCCCCCcccCCCCCCCEEEcc
Q 002679 132 KLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALT 211 (893)
Q Consensus 132 ~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 211 (893)
+...|+++++.++ .+|..+. ++|+.|+|++|.++ .+|..+. .+|++|++++|+++. +|..+. .+|+.|+++
T Consensus 179 ~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lts-LP~~l~--~~L~~L~Ls 249 (754)
T PRK15370 179 NKTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLTS-IPATLP--DTIQEMELS 249 (754)
T ss_pred CceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCcccc-CChhhh--ccccEEECc
Confidence 4455666665555 3454432 35666666666655 3444332 356666666666553 343332 356666666
Q ss_pred CCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEccCCCCCCCCCCcCCCCCCCCEEEeecCCCCCCC
Q 002679 212 SNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSI 291 (893)
Q Consensus 212 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~ 291 (893)
+|.+. .+|..+. ++|+.|++++|.++ .+|..+. ++|+.|++++|++++ +|..+. ++|+.|++++|.++. +
T Consensus 250 ~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~-L 319 (754)
T PRK15370 250 INRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTA-L 319 (754)
T ss_pred CCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCcccc-C
Confidence 66665 3444332 35666666666666 3454443 366777777776663 443332 356677777777663 3
Q ss_pred CccccCCCCCCeeecCCCcCCCCCCCCCCCCCCCCEEEccCCCCccccCCCCCCCCCCCeEEccCCcCCCCcccccCCCc
Q 002679 292 PSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLT 371 (893)
Q Consensus 292 ~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~ 371 (893)
|..+. ++|+.|++++|.+++ +|..+. ++|+.|++++|+++ .+|..+ .++|+.|++++|.++. +|..+. .
T Consensus 320 P~~l~--~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt~-LP~~l~--~ 388 (754)
T PRK15370 320 PETLP--PGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALTN-LPENLP--A 388 (754)
T ss_pred Ccccc--ccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCCC-CCHhHH--H
Confidence 43332 567777777777664 454442 56777777777776 345443 2567777777777774 343332 3
Q ss_pred ccceEecccccCCCCCCccc----cccccCceeccCCcccc
Q 002679 372 NLAAFYLYKNSLSGSIPSEI----GNLKSLSNLDLSENKLS 408 (893)
Q Consensus 372 ~L~~L~L~~n~l~~~~~~~l----~~l~~L~~L~Ls~n~l~ 408 (893)
.|+.|++++|++. .+|..+ ..++.+..|++.+|.++
T Consensus 389 sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 389 ALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred HHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 5777777777776 445433 33466778888888776
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.76 E-value=4.3e-18 Score=197.66 Aligned_cols=248 Identities=25% Similarity=0.341 Sum_probs=161.7
Q ss_pred ccccccCCCCCcCCCccccCCCCCccceEEcccCcCcccCCccccCCCCCCEEecCCCcCcCCCCCcCCCCCCCEEEcCC
Q 002679 444 SLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNR 523 (893)
Q Consensus 444 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~~~~L~~L~l~~ 523 (893)
+...|+++++.++. +|..+. +.++.|++++|.++. +|..+. .+|++|++++|.++.....+ ..+|+.|++++
T Consensus 179 ~~~~L~L~~~~Lts-LP~~Ip--~~L~~L~Ls~N~Lts-LP~~l~--~nL~~L~Ls~N~LtsLP~~l--~~~L~~L~Ls~ 250 (754)
T PRK15370 179 NKTELRLKILGLTT-IPACIP--EQITTLILDNNELKS-LPENLQ--GNIKTLYANSNQLTSIPATL--PDTIQEMELSI 250 (754)
T ss_pred CceEEEeCCCCcCc-CCcccc--cCCcEEEecCCCCCc-CChhhc--cCCCEEECCCCccccCChhh--hccccEEECcC
Confidence 45678888888775 344332 578888888888884 444433 47888888888887432233 24688888888
Q ss_pred CcCCCCCCccccCCCCCcEEeccCCcccccCCcCcCCCCCccEEEccCCccCCCCCCCcCCCCCccEEEccCCcccccCC
Q 002679 524 NHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIP 603 (893)
Q Consensus 524 n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p 603 (893)
|.+.. +|..+. .+|+.|++++|+++. +|..+. ++|+.|++++|++++ +|..+. ++|+.|++++|+++. +|
T Consensus 251 N~L~~-LP~~l~--s~L~~L~Ls~N~L~~-LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~-LP 320 (754)
T PRK15370 251 NRITE-LPERLP--SALQSLDLFHNKISC-LPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTA-LP 320 (754)
T ss_pred CccCc-CChhHh--CCCCEEECcCCccCc-cccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCcccc-CC
Confidence 88773 444442 468888888888774 454432 478888888887774 444332 367777888887763 44
Q ss_pred ccccCcccceeEEeccccccCCCcccccCCcccceecCCCCcccccccccccCCCCCCeeecccCcCCcccchhhhhccC
Q 002679 604 SEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIH 683 (893)
Q Consensus 604 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 683 (893)
..+. ++|+.|++++|.+++ +|..+ .++|+.|++++|+++ .+|..+. ++|+.|+|++|++++ +|..+. .+
T Consensus 321 ~~l~--~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt~-LP~~l~--~s 389 (754)
T PRK15370 321 ETLP--PGLKTLEAGENALTS-LPASL--PPELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALTN-LPENLP--AA 389 (754)
T ss_pred cccc--ccceeccccCCcccc-CChhh--cCcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCCC-CCHhHH--HH
Confidence 4332 577777888877765 44443 257777888887776 3555553 577778888877764 444443 25
Q ss_pred ccccccccccCCCc---ccccccCCcccceeeCCCCcCCC
Q 002679 684 LSELDLSHNFLGKE---IPSQICNMRSLEMLNLSHNNLSD 720 (893)
Q Consensus 684 L~~L~Ls~N~l~~~---~p~~~~~l~~L~~L~Ls~N~l~~ 720 (893)
|+.|++++|++++. +|..+..++.+..|++.+|+++.
T Consensus 390 L~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls~ 429 (754)
T PRK15370 390 LQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFSE 429 (754)
T ss_pred HHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCccH
Confidence 77777777777632 22333445677777777777763
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.72 E-value=3.2e-19 Score=193.49 Aligned_cols=279 Identities=23% Similarity=0.241 Sum_probs=141.2
Q ss_pred cccCCCCCcCC-CccccCCCCCccceEEcccCcCccc----CCccccCCCCCCEEecCCCcCcCCCCCcCCCCCCCEEEc
Q 002679 447 ELQLGDNKLSN-SISHSLGNLTHMTLLALYDNALSGV----IPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRL 521 (893)
Q Consensus 447 ~L~Ls~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~~~~L~~L~l 521 (893)
.|+|..+.+++ .....+..+.+|+.++++++.++.. ++..+...+.+++++++++.+.+....+
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~----------- 70 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGL----------- 70 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHH-----------
Confidence 45666666652 3334445556677777777766432 3333445555666666655544200000
Q ss_pred CCCcCCCCCCccccCCCCCcEEeccCCcccccCCcCcCCC---CCccEEEccCCccCC----CCCCCcCCC-CCccEEEc
Q 002679 522 NRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKC---PNLGTFDVSVNNIIG----SLPPEIGDS-SQLHVIDL 593 (893)
Q Consensus 522 ~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~---~~L~~L~ls~n~l~~----~~p~~l~~l-~~L~~L~L 593 (893)
..++..+..+++|+.|++++|.+.+..+..+..+ ++|++|++++|++++ .+...+..+ ++|+.|++
T Consensus 71 ------~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L 144 (319)
T cd00116 71 ------QSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVL 144 (319)
T ss_pred ------HHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEc
Confidence 0111223333444444444444433222222222 225555555554442 111222333 55666666
Q ss_pred cCCccccc----CCccccCcccceeEEeccccccCC----CcccccCCcccceecCCCCccccc----ccccccCCCCCC
Q 002679 594 SANHIIGK----IPSEIGKLSSLIKLILRRNQLFGQ----LPSELGSLIQLEYLDLSSNRLSNS----IPRSLGNLVKLH 661 (893)
Q Consensus 594 s~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~ 661 (893)
++|.+++. ++..+..+++|++|++++|.+.+. ++..+..+++|+.|++++|.+.+. ++..+..+++|+
T Consensus 145 ~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~ 224 (319)
T cd00116 145 GRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLE 224 (319)
T ss_pred CCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCC
Confidence 66665521 223344455666666666666532 223344455677777777666532 233455666777
Q ss_pred eeecccCcCCcccchhhhh-----ccCccccccccccCCC----cccccccCCcccceeeCCCCcCCCC----Cchhhhc
Q 002679 662 YLNLSTNQFIQEIPIKLEK-----LIHLSELDLSHNFLGK----EIPSQICNMRSLEMLNLSHNNLSDF----IPRCFEE 728 (893)
Q Consensus 662 ~L~Ls~N~l~~~~p~~l~~-----l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~ 728 (893)
.|++++|.+++.....+.. .+.|+.|++++|.++. .+...+..++.|+++|+++|.++.. ....+..
T Consensus 225 ~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~ 304 (319)
T cd00116 225 VLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLE 304 (319)
T ss_pred EEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhh
Confidence 7777777766533333322 2567777777777652 2334455556777777777777754 3333333
Q ss_pred C-CCCCEEEccCCcc
Q 002679 729 M-NGLLYIDISYNEL 742 (893)
Q Consensus 729 l-~~L~~l~ls~N~l 742 (893)
. +.|+.+|+.+|++
T Consensus 305 ~~~~~~~~~~~~~~~ 319 (319)
T cd00116 305 PGNELESLWVKDDSF 319 (319)
T ss_pred cCCchhhcccCCCCC
Confidence 3 4566777766653
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.69 E-value=1.1e-18 Score=189.24 Aligned_cols=276 Identities=26% Similarity=0.296 Sum_probs=168.2
Q ss_pred eeeccccccc-ccCChhhhcccccccccCCCCCcCCC----ccccCCCCCccceEEcccCcCcc------cCCccccCCC
Q 002679 423 ILYLHSNTLL-GSIPREIGNLKSLFELQLGDNKLSNS----ISHSLGNLTHMTLLALYDNALSG------VIPEELGNLV 491 (893)
Q Consensus 423 ~L~L~~n~l~-~~~~~~~~~~~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~------~~~~~~~~l~ 491 (893)
.|+|..+.++ ......+..+..|+.++++++.++.. ++..+...+.++.++++++.+.+ .++..+..++
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 4677888887 34556677788899999999998653 45556677889999999988762 2334566677
Q ss_pred CCCEEecCCCcCcCCCC-CcCCC---CCCCEEEcCCCcCCCC----CCccccCC-CCCcEEeccCCcccccCCcCcCCCC
Q 002679 492 KLTMLTLSDNQLQGSIP-NLRNL---TNLIRLRLNRNHLTCN----ISESFGIH-PKLTFIDLSHNNFYGQISSDWGKCP 562 (893)
Q Consensus 492 ~L~~L~Ls~n~l~~~~~-~l~~~---~~L~~L~l~~n~l~~~----~~~~~~~~-~~L~~L~ls~n~l~~~~~~~~~~~~ 562 (893)
+|+.|++++|.+.+..+ .+..+ ++|++|++++|++++. +...+..+ ++|+.|++++|.+++....
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~------ 155 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCE------ 155 (319)
T ss_pred ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHH------
Confidence 88888888887764332 22222 3466666666665521 11222333 4555555555554421110
Q ss_pred CccEEEccCCccCCCCCCCcCCCCCccEEEccCCcccc----cCCccccCcccceeEEeccccccCC----CcccccCCc
Q 002679 563 NLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIG----KIPSEIGKLSSLIKLILRRNQLFGQ----LPSELGSLI 634 (893)
Q Consensus 563 ~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~----~~p~~l~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~ 634 (893)
.++..+..++.|++|++++|.+.+ .++..+..+++|+.|++++|.+.+. ++..+..++
T Consensus 156 --------------~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~ 221 (319)
T cd00116 156 --------------ALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLK 221 (319)
T ss_pred --------------HHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccC
Confidence 112223344455555555555542 1222334445666666666665533 233445667
Q ss_pred ccceecCCCCccccccccccc-----CCCCCCeeecccCcCCc----ccchhhhhccCccccccccccCCCc----cccc
Q 002679 635 QLEYLDLSSNRLSNSIPRSLG-----NLVKLHYLNLSTNQFIQ----EIPIKLEKLIHLSELDLSHNFLGKE----IPSQ 701 (893)
Q Consensus 635 ~L~~L~Ls~n~l~~~~p~~l~-----~l~~L~~L~Ls~N~l~~----~~p~~l~~l~~L~~L~Ls~N~l~~~----~p~~ 701 (893)
+|++|++++|.+++.....+. ..+.|+.|++++|.++. .+...+..+++|+++++++|.++.. ....
T Consensus 222 ~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~ 301 (319)
T cd00116 222 SLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAES 301 (319)
T ss_pred CCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHH
Confidence 788888888777653222222 23688888888888762 3344566667888888888888755 4444
Q ss_pred ccCC-cccceeeCCCCcC
Q 002679 702 ICNM-RSLEMLNLSHNNL 718 (893)
Q Consensus 702 ~~~l-~~L~~L~Ls~N~l 718 (893)
+... +.|++||+.+|++
T Consensus 302 ~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 302 LLEPGNELESLWVKDDSF 319 (319)
T ss_pred HhhcCCchhhcccCCCCC
Confidence 4445 6888888888864
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.65 E-value=1.9e-18 Score=154.22 Aligned_cols=159 Identities=32% Similarity=0.553 Sum_probs=112.9
Q ss_pred ccCCCCCCCCEEECCCCCCCccCCccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCeecCCCccCCCCCCCCCCCCCC
Q 002679 101 FSFSSFPHLAYLDLQVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSY 180 (893)
Q Consensus 101 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 180 (893)
+.+..+.+++.|.||+|+++- +|+.+..+.+|++|++++|+++ .+|.+++.++.|+.|+++-|++. ..|..|+.++.
T Consensus 27 ~gLf~~s~ITrLtLSHNKl~~-vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~ 103 (264)
T KOG0617|consen 27 PGLFNMSNITRLTLSHNKLTV-VPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPA 103 (264)
T ss_pred ccccchhhhhhhhcccCceee-cCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCch
Confidence 345667788888999998875 4557888999999999999988 78888999999999999988887 78888888888
Q ss_pred CCEEeCCCccCCC-CCCcccCCCCCCCEEEccCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEcc
Q 002679 181 IEALHLFKNQLSG-PIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALG 259 (893)
Q Consensus 181 L~~L~L~~n~l~~-~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls 259 (893)
|+.|||.+|++.. ..|..|..++.|+.|+++.|.+. .+|..++++++|+.|.+..|.+- ..|..++.+++|++|.+.
T Consensus 104 levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiq 181 (264)
T KOG0617|consen 104 LEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQ 181 (264)
T ss_pred hhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcc
Confidence 8888888877653 45556666666666666666555 44555555555555555555544 345555555555555555
Q ss_pred CCCCC
Q 002679 260 NNKLC 264 (893)
Q Consensus 260 ~n~l~ 264 (893)
+|+++
T Consensus 182 gnrl~ 186 (264)
T KOG0617|consen 182 GNRLT 186 (264)
T ss_pred cceee
Confidence 55554
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.60 E-value=1.3e-17 Score=148.98 Aligned_cols=164 Identities=37% Similarity=0.571 Sum_probs=106.1
Q ss_pred ccCCCCCCEEeCCCCCCCCCCCccccCCCCCCeecCCCccCCCCCCCCCCCCCCCCEEeCCCccCCCCCCcccCCCCCCC
Q 002679 127 IGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLN 206 (893)
Q Consensus 127 ~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 206 (893)
+-++.+.+.|.||+|.++ .+|..+..+.+|++|++.+|+++ .+|.+++.+++|++|+++-|.+. ..|..|+.++.|+
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~le 105 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALE 105 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhh
Confidence 345677788889999998 67778899999999999999988 78888888888888888777654 4566666666666
Q ss_pred EEEccCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEccCCCCCCCCCCcCCCCCCCCEEEeecCC
Q 002679 207 ELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNS 286 (893)
Q Consensus 207 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~ 286 (893)
.||+++|++.. ...|..|..++.|+-|.++.|.+. .+|..++++++|+.|.++.|.
T Consensus 106 vldltynnl~e-----------------------~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdnd 161 (264)
T KOG0617|consen 106 VLDLTYNNLNE-----------------------NSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDND 161 (264)
T ss_pred hhhcccccccc-----------------------ccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCc
Confidence 66666665542 123444444444555555555554 445555555555555555555
Q ss_pred CCCCCCccccCCCCCCeeecCCCcCCCCCCCCC
Q 002679 287 FSSSIPSEIGNLKSLSILELGENRLNGSIPLSL 319 (893)
Q Consensus 287 l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~ 319 (893)
+- .+|..++.++.|++|.+.+|+++ .+|..+
T Consensus 162 ll-~lpkeig~lt~lrelhiqgnrl~-vlppel 192 (264)
T KOG0617|consen 162 LL-SLPKEIGDLTRLRELHIQGNRLT-VLPPEL 192 (264)
T ss_pred hh-hCcHHHHHHHHHHHHhcccceee-ecChhh
Confidence 54 44555555666666666666655 344333
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.60 E-value=4.7e-15 Score=172.34 Aligned_cols=147 Identities=37% Similarity=0.621 Sum_probs=113.5
Q ss_pred CCHHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCCCCCCC-----ccCceeeCC---C--CCEEEEEcCCCCCccccCCcc
Q 002679 33 DSTEEVHALLKWKTSLQNHDKGSLLPSWTLNNATKISPC-----AWFGIHCNH---V--GRVNSINLTNVGLKGTLHDFS 102 (893)
Q Consensus 33 ~~~~~~~~ll~~k~~~~~~~~~~~l~~W~~~~~~~~~~c-----~w~gv~c~~---~--~~v~~l~l~~~~l~g~~~~~~ 102 (893)
..++|.+||+++|+++.. + . ..+|. + ++| .|.||.|.. . .+|+.|+|+++++.|.+| ..
T Consensus 369 t~~~~~~aL~~~k~~~~~-~-~--~~~W~-----g-~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip-~~ 437 (623)
T PLN03150 369 TLLEEVSALQTLKSSLGL-P-L--RFGWN-----G-DPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIP-ND 437 (623)
T ss_pred cCchHHHHHHHHHHhcCC-c-c--cCCCC-----C-CCCCCcccccccceeeccCCCCceEEEEEECCCCCccccCC-HH
Confidence 456899999999999864 3 1 24796 2 334 799999952 2 248888888888888888 67
Q ss_pred CCCCCCCCEEECCCCCCCccCCccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCeecCCCccCCCCCCCCCCCC-CCC
Q 002679 103 FSSFPHLAYLDLQVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHL-SYI 181 (893)
Q Consensus 103 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l-~~L 181 (893)
+..+++|++|+|++|.+.|.+|..++.+++|++|+|++|.++|.+|..++++++|++|+|++|.++|.+|..++.+ .++
T Consensus 438 i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~ 517 (623)
T PLN03150 438 ISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHR 517 (623)
T ss_pred HhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccC
Confidence 8888888888888888888888888888888888888888888888888888888888888888888888777653 345
Q ss_pred CEEeCCCcc
Q 002679 182 EALHLFKNQ 190 (893)
Q Consensus 182 ~~L~L~~n~ 190 (893)
..+++.+|.
T Consensus 518 ~~l~~~~N~ 526 (623)
T PLN03150 518 ASFNFTDNA 526 (623)
T ss_pred ceEEecCCc
Confidence 566665554
No 24
>PLN03150 hypothetical protein; Provisional
Probab=99.54 E-value=1.7e-14 Score=167.69 Aligned_cols=117 Identities=29% Similarity=0.508 Sum_probs=66.7
Q ss_pred CCeeecccCcCCcccchhhhhccCccccccccccCCCcccccccCCcccceeeCCCCcCCCCCchhhhcCCCCCEEEccC
Q 002679 660 LHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISY 739 (893)
Q Consensus 660 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~ 739 (893)
++.|+|++|.+.|.+|..+..+++|+.|+|++|.++|.+|..++.+++|+.|||++|+++|.+|..++.+++|+.||+++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 44555555555555555555555555555555555555555555555555566666666555555555555666666666
Q ss_pred CcccccCCCCc--ccccchhhhhcCCCCCCCCCCCCCCCC
Q 002679 740 NELHGPIPNST--AFSDALMEALQGNEGLCGDIKGFQSCK 777 (893)
Q Consensus 740 N~l~g~ip~~~--~~~~~~~~~~~gn~~lc~~~~~~~~C~ 777 (893)
|+++|.+|..- .+.......+.+|+.+|+. |....|.
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~-p~l~~C~ 538 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAGLCGI-PGLRACG 538 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCccccCC-CCCCCCc
Confidence 66666555321 0111122346788889986 5556785
No 25
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.12 E-value=4.1e-11 Score=142.11 Aligned_cols=199 Identities=28% Similarity=0.329 Sum_probs=126.9
Q ss_pred CEEEEEcCCCCCccccCCccCCCCCCCCEEECCCCC--CCccCCccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCee
Q 002679 83 RVNSINLTNVGLKGTLHDFSFSSFPHLAYLDLQVNQ--IFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFL 160 (893)
Q Consensus 83 ~v~~l~l~~~~l~g~~~~~~~~~l~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L 160 (893)
.|+.+.+.++.+.-. ..=...+.|++|-+.+|. +....++.|..++.|++||||+|.--+.+|..++.|-+||+|
T Consensus 524 ~~rr~s~~~~~~~~~---~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL 600 (889)
T KOG4658|consen 524 SVRRMSLMNNKIEHI---AGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYL 600 (889)
T ss_pred heeEEEEeccchhhc---cCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcc
Confidence 445555555443321 112234578888888885 555455568889999999999887767899999999999999
Q ss_pred cCCCccCCCCCCCCCCCCCCCCEEeCCCccCCCCCCcccCCCCCCCEEEccCCCC--CCCCCCCCCCCCCCCEEEccCCc
Q 002679 161 YLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFL--KGSIPPSLGNLTNLAILYLHNNS 238 (893)
Q Consensus 161 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l--~~~~~~~l~~l~~L~~L~L~~n~ 238 (893)
+++++.+. .+|..+++|+.|.+|++..+.-...+|.....+++|++|.+..... ....-..+.++.+|+.+......
T Consensus 601 ~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s 679 (889)
T KOG4658|consen 601 DLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISS 679 (889)
T ss_pred cccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecch
Confidence 99999988 8899999999999999988876666677777788999888876542 22222334555555555553332
Q ss_pred CCCCCCccccCCCCCC----EEEccCCCCCCCCCCcCCCCCCCCEEEeecCCCC
Q 002679 239 LSGSIPSEIGNLKSLS----SLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFS 288 (893)
Q Consensus 239 l~~~~~~~l~~l~~L~----~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 288 (893)
. .+-..+..+++|. .+.+.++... ..+..+..+.+|+.|.+.++.+.
T Consensus 680 ~--~~~e~l~~~~~L~~~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~ 730 (889)
T KOG4658|consen 680 V--LLLEDLLGMTRLRSLLQSLSIEGCSKR-TLISSLGSLGNLEELSILDCGIS 730 (889)
T ss_pred h--HhHhhhhhhHHHHHHhHhhhhcccccc-eeecccccccCcceEEEEcCCCc
Confidence 2 0111122222222 2222222222 23444556667777777766654
No 26
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.11 E-value=1.1e-10 Score=130.34 Aligned_cols=199 Identities=40% Similarity=0.583 Sum_probs=127.3
Q ss_pred EEECCCCCCCccCCccccCCCCCCEEeCCCCCCCCCCCccccCCC-CCCeecCCCccCCCCCCCCCCCCCCCCEEeCCCc
Q 002679 111 YLDLQVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLS-MLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKN 189 (893)
Q Consensus 111 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n 189 (893)
.+++..+.+...+ ..+..++.++.|++.+|.++ .+|.....+. +|+.|++++|.+. .+|..++.+++|+.|++++|
T Consensus 97 ~l~~~~~~~~~~~-~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRSNI-SELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccccCc-hhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence 4566665553221 23444566777777777766 5555555553 6777777777666 55556667777777777777
Q ss_pred cCCCCCCcccCCCCCCCEEEccCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEccCCCCCCCCCC
Q 002679 190 QLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPL 269 (893)
Q Consensus 190 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~ 269 (893)
+++.. |...+.++.|+.|++++|++. .+|........|+++.+++|.+. ..+..+.+++++..+.+.+|++. ..+.
T Consensus 174 ~l~~l-~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~ 249 (394)
T COG4886 174 DLSDL-PKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPE 249 (394)
T ss_pred hhhhh-hhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccc
Confidence 76643 333336667777777777776 34444445556777777777433 34455667777777777777765 3356
Q ss_pred cCCCCCCCCEEEeecCCCCCCCCccccCCCCCCeeecCCCcCCCCCCCC
Q 002679 270 FLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLS 318 (893)
Q Consensus 270 ~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~ 318 (893)
.++.++++++|++++|.++...+ ++.+.+++.|++++|.+....|..
T Consensus 250 ~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~~ 296 (394)
T COG4886 250 SIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPLI 296 (394)
T ss_pred hhccccccceecccccccccccc--ccccCccCEEeccCccccccchhh
Confidence 67777778888888888774432 777788888888888777655543
No 27
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.11 E-value=2.3e-12 Score=136.78 Aligned_cols=182 Identities=32% Similarity=0.511 Sum_probs=145.3
Q ss_pred CCCCCCCEEECCCCCCCccCCccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCeecCCCccCCCCCCCCCCCCCCCCE
Q 002679 104 SSFPHLAYLDLQVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEA 183 (893)
Q Consensus 104 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 183 (893)
-.+..-...||+.|.+.. +|..++.+..|+.+.|..|.+. .+|..++++..|.+|||+.|+++ .+|..+..|+ |+.
T Consensus 72 ~~ltdt~~aDlsrNR~~e-lp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkv 147 (722)
T KOG0532|consen 72 YDLTDTVFADLSRNRFSE-LPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKV 147 (722)
T ss_pred ccccchhhhhcccccccc-CchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-cee
Confidence 355666778999998864 6888888889999999999887 88899999999999999999988 7888887776 888
Q ss_pred EeCCCccCCCCCCcccCCCCCCCEEEccCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEccCCCC
Q 002679 184 LHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKL 263 (893)
Q Consensus 184 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l 263 (893)
|-+++|+++ .+|..++.+.+|.+||.+.|.+. .+|..++.+.+|+.|.++.|++. .+|..+.. -.|..||++.|++
T Consensus 148 li~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~-LpLi~lDfScNki 223 (722)
T KOG0532|consen 148 LIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCS-LPLIRLDFSCNKI 223 (722)
T ss_pred EEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhC-CceeeeecccCce
Confidence 888888886 56777778888888888888887 55667788888888888888876 56666663 3578888888888
Q ss_pred CCCCCCcCCCCCCCCEEEeecCCCCCCCCccc
Q 002679 264 CGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEI 295 (893)
Q Consensus 264 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l 295 (893)
. .+|..|.+|+.|++|.|.+|.+.. .|..+
T Consensus 224 s-~iPv~fr~m~~Lq~l~LenNPLqS-PPAqI 253 (722)
T KOG0532|consen 224 S-YLPVDFRKMRHLQVLQLENNPLQS-PPAQI 253 (722)
T ss_pred e-ecchhhhhhhhheeeeeccCCCCC-ChHHH
Confidence 7 678888888888888888888773 34433
No 28
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.07 E-value=3.6e-10 Score=126.12 Aligned_cols=152 Identities=43% Similarity=0.603 Sum_probs=67.1
Q ss_pred CCCEEEccCCcCCCCCCccccCCCCCCEEEccCCCCCCCCCCcCCCCCCCCEEEeecCCCCCCCCccccCCCCCCeeecC
Q 002679 228 NLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELG 307 (893)
Q Consensus 228 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls 307 (893)
+|+.|++++|++. .+|..+..++.|+.|++++|+++ .+|...+..++|+.|++++|++. .+|........|+++.++
T Consensus 141 nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~ 217 (394)
T COG4886 141 NLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLS 217 (394)
T ss_pred hcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhc
Confidence 4444444444444 22233444455555555555554 23333334445555555555544 233323333345555555
Q ss_pred CCcCCCCCCCCCCCCCCCCEEEccCCCCccccCCCCCCCCCCCeEEccCCcCCCCcccccCCCcccceEecccccCCCC
Q 002679 308 ENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGS 386 (893)
Q Consensus 308 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 386 (893)
+|+.. ..+..+.++.++..+.+.+|++.. .+..++.+++++.|++++|.++...+ ++.+.+++.+++++|.+...
T Consensus 218 ~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~-~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~ 292 (394)
T COG4886 218 NNSII-ELLSSLSNLKNLSGLELSNNKLED-LPESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNA 292 (394)
T ss_pred CCcce-ecchhhhhcccccccccCCceeee-ccchhccccccceecccccccccccc--ccccCccCEEeccCcccccc
Confidence 55322 233344444444444444444432 13334444445555555554443222 44444444444444444433
No 29
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.06 E-value=4.7e-12 Score=134.46 Aligned_cols=175 Identities=34% Similarity=0.546 Sum_probs=113.0
Q ss_pred CCCCCCEEeCCCCCCCCCCCccccCCCCCCeecCCCccCCCCCCCCCCCCCCCCEEeCCCccCCCCCCcccCCCCCCCEE
Q 002679 129 NISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNEL 208 (893)
Q Consensus 129 ~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 208 (893)
.+.--...||+.|++. .+|..++.+..|+.+.|..|.+. .+|..+.++..|++||++.|+++
T Consensus 73 ~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS---------------- 134 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS---------------- 134 (722)
T ss_pred cccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh----------------
Confidence 4555567788888888 78888888888888888888876 67777777777777766666654
Q ss_pred EccCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEccCCCCCCCCCCcCCCCCCCCEEEeecCCCC
Q 002679 209 ALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFS 288 (893)
Q Consensus 209 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 288 (893)
..|..+..|+ |+.|-+++|+++ .+|..++....|..||.+.|.+. .+|..++.+.+|+.|.++.|++.
T Consensus 135 ---------~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~ 202 (722)
T KOG0532|consen 135 ---------HLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE 202 (722)
T ss_pred ---------cCChhhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh
Confidence 2333333332 566666666655 45566665666666666666665 45555666666666666666665
Q ss_pred CCCCccccCCCCCCeeecCCCcCCCCCCCCCCCCCCCCEEEccCCCCc
Q 002679 289 SSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLS 336 (893)
Q Consensus 289 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~ 336 (893)
.+|..+..+ .|..||++.|++. .+|-.|.+|..|++|.|.+|.+.
T Consensus 203 -~lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 203 -DLPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred -hCCHHHhCC-ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC
Confidence 344445533 3666666666665 55666666666666666666554
No 30
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.01 E-value=2.3e-10 Score=108.59 Aligned_cols=85 Identities=31% Similarity=0.343 Sum_probs=24.7
Q ss_pred CcccceecCCCCcccccccccccCCCCCCeeecccCcCCcccchhhhhccCccccccccccCCCcc-cccccCCccccee
Q 002679 633 LIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEI-PSQICNMRSLEML 711 (893)
Q Consensus 633 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L 711 (893)
+.+|+.|++++|.++.. +.+..++.|+.|++++|+++...+.....+++|++|+|++|+|...- -..+..+++|++|
T Consensus 41 l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L 118 (175)
T PF14580_consen 41 LDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVL 118 (175)
T ss_dssp -TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EE
T ss_pred hcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCccee
Confidence 44555555555555532 23455555666666666554432211234555555555555554321 1233444555555
Q ss_pred eCCCCcCC
Q 002679 712 NLSHNNLS 719 (893)
Q Consensus 712 ~Ls~N~l~ 719 (893)
+|.+|+++
T Consensus 119 ~L~~NPv~ 126 (175)
T PF14580_consen 119 SLEGNPVC 126 (175)
T ss_dssp E-TT-GGG
T ss_pred eccCCccc
Confidence 55555554
No 31
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.99 E-value=1.5e-10 Score=113.44 Aligned_cols=111 Identities=26% Similarity=0.274 Sum_probs=55.2
Q ss_pred CCcccceecCCCCcccccccccccCCCCCCeeecccCcCCcccchhhhhccCccccccccccCCCcccccccCCccccee
Q 002679 632 SLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEML 711 (893)
Q Consensus 632 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 711 (893)
-.+.++.|++|+|.+... +.+..+++|+.||||+|.++.. -.+=..+.+.+.|.|+.|.+... +.+..+-+|..|
T Consensus 305 L~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~~-~Gwh~KLGNIKtL~La~N~iE~L--SGL~KLYSLvnL 379 (490)
T KOG1259|consen 305 LAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAEC-VGWHLKLGNIKTLKLAQNKIETL--SGLRKLYSLVNL 379 (490)
T ss_pred hccceeEEeccccceeee--hhhhhcccceEeecccchhHhh-hhhHhhhcCEeeeehhhhhHhhh--hhhHhhhhheec
Confidence 344444445555544422 2244455555555555544322 11223344455555555555322 334455555666
Q ss_pred eCCCCcCCCCC-chhhhcCCCCCEEEccCCcccccCC
Q 002679 712 NLSHNNLSDFI-PRCFEEMNGLLYIDISYNELHGPIP 747 (893)
Q Consensus 712 ~Ls~N~l~~~~-p~~l~~l~~L~~l~ls~N~l~g~ip 747 (893)
|+++|++.... -..+++++-|+.+.+.+||+.+.+.
T Consensus 380 Dl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 380 DLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred cccccchhhHHHhcccccccHHHHHhhcCCCccccch
Confidence 66666555432 2455566666666677777666544
No 32
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.98 E-value=1.1e-11 Score=124.47 Aligned_cols=133 Identities=20% Similarity=0.312 Sum_probs=67.4
Q ss_pred CCCCEEEccCCcCCCCCC----ccccCCCCCCEEEccCCCCCCC----CCCcCCCCCCCCEEEeecCCCCCC----CCcc
Q 002679 227 TNLAILYLHNNSLSGSIP----SEIGNLKSLSSLALGNNKLCGS----IPLFLGNLTNLDTLYLRNNSFSSS----IPSE 294 (893)
Q Consensus 227 ~~L~~L~L~~n~l~~~~~----~~l~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~----~~~~ 294 (893)
+.|+++....|++..... ..+...+.|+.+.++.|.+... +...+..+++|+.|||.+|.++.. +...
T Consensus 157 ~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Laka 236 (382)
T KOG1909|consen 157 PKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKA 236 (382)
T ss_pred cceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHH
Confidence 345555555554432111 1233345555555555554311 112344556666666666655532 2233
Q ss_pred ccCCCCCCeeecCCCcCCCCCCCCC-----CCCCCCCEEEccCCCCccc----cCCCCCCCCCCCeEEccCCcC
Q 002679 295 IGNLKSLSILELGENRLNGSIPLSL-----GNLTNLDTLYLYTNSLSGS----IPSEIGNLKSLSGLELADNEL 359 (893)
Q Consensus 295 l~~l~~L~~L~Ls~n~l~~~~p~~~-----~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~ls~n~l 359 (893)
+..+++|++|++++|.+.......+ ...|.|+.+.+.+|.++.. +...+...+.|..|++++|.+
T Consensus 237 L~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 237 LSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred hcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 4455566666666666554322222 1256677777777766432 122234467777777777777
No 33
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.95 E-value=2.8e-10 Score=135.11 Aligned_cols=179 Identities=26% Similarity=0.360 Sum_probs=127.3
Q ss_pred CEEEEEcCCCCC-ccccCCccCCCCCCCCEEECCCCCCCccCCccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCeec
Q 002679 83 RVNSINLTNVGL-KGTLHDFSFSSFPHLAYLDLQVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLY 161 (893)
Q Consensus 83 ~v~~l~l~~~~l-~g~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~ 161 (893)
.++.+-+.++.. -..++...|..++.|++|||++|.=-+.+|..++.|-+||||+|+++.+. .+|..+++|..|.+|+
T Consensus 546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Ln 624 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLN 624 (889)
T ss_pred ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheec
Confidence 466777766652 23344244888999999999998766789999999999999999999998 8999999999999999
Q ss_pred CCCccCCCCCCCCCCCCCCCCEEeCCCcc--CCCCCCcccCCCCCCCEEEccCCCCCCCCCCCCCCCCCCC----EEEcc
Q 002679 162 LSANQFSGRIPPQIGHLSYIEALHLFKNQ--LSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLA----ILYLH 235 (893)
Q Consensus 162 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~--l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~----~L~L~ 235 (893)
+..+.-...+|.....+.+||+|.+.... .+...-..+.++.+|+.+....... .+-..+..+++|. .+.+.
T Consensus 625 l~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~--~~~e~l~~~~~L~~~~~~l~~~ 702 (889)
T KOG4658|consen 625 LEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV--LLLEDLLGMTRLRSLLQSLSIE 702 (889)
T ss_pred cccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh--HhHhhhhhhHHHHHHhHhhhhc
Confidence 99988766777777889999999997664 2223333455666666666543332 1111223333333 23333
Q ss_pred CCcCCCCCCccccCCCCCCEEEccCCCCCC
Q 002679 236 NNSLSGSIPSEIGNLKSLSSLALGNNKLCG 265 (893)
Q Consensus 236 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~ 265 (893)
++... ..+..+..+.+|+.|.+.++.+..
T Consensus 703 ~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e 731 (889)
T KOG4658|consen 703 GCSKR-TLISSLGSLGNLEELSILDCGISE 731 (889)
T ss_pred ccccc-eeecccccccCcceEEEEcCCCch
Confidence 32322 345567788999999999988764
No 34
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.91 E-value=8.1e-10 Score=104.87 Aligned_cols=109 Identities=30% Similarity=0.346 Sum_probs=44.6
Q ss_pred CCcccceecCCCCccccccccccc-CCCCCCeeecccCcCCcccchhhhhccCccccccccccCCCcccccccCCcccce
Q 002679 632 SLIQLEYLDLSSNRLSNSIPRSLG-NLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEM 710 (893)
Q Consensus 632 ~l~~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 710 (893)
+...+++|+|.+|.|+.+ +.++ .+.+|+.|||++|.++... .+..++.|++|++++|+|+...+.....+++|++
T Consensus 17 n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l~--~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKLE--GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQE 92 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S--T--T----TT--EEE--SS---S-CHHHHHH-TT--E
T ss_pred cccccccccccccccccc--cchhhhhcCCCEEECCCCCCcccc--CccChhhhhhcccCCCCCCccccchHHhCCcCCE
Confidence 556788999999998854 3465 5789999999999997653 5788999999999999997654332246899999
Q ss_pred eeCCCCcCCCCC-chhhhcCCCCCEEEccCCcccc
Q 002679 711 LNLSHNNLSDFI-PRCFEEMNGLLYIDISYNELHG 744 (893)
Q Consensus 711 L~Ls~N~l~~~~-p~~l~~l~~L~~l~ls~N~l~g 744 (893)
|++++|+|.... -..++.+++|+.|++.+||++.
T Consensus 93 L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~ 127 (175)
T PF14580_consen 93 LYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCE 127 (175)
T ss_dssp EE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGG
T ss_pred EECcCCcCCChHHhHHHHcCCCcceeeccCCcccc
Confidence 999999998753 3677889999999999999864
No 35
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.91 E-value=1.1e-10 Score=117.60 Aligned_cols=133 Identities=29% Similarity=0.346 Sum_probs=74.0
Q ss_pred ccceeEEeccccccCC----CcccccCCcccceecCCCCcccc----cccccccCCCCCCeeecccCcCCcccc----hh
Q 002679 610 SSLIKLILRRNQLFGQ----LPSELGSLIQLEYLDLSSNRLSN----SIPRSLGNLVKLHYLNLSTNQFIQEIP----IK 677 (893)
Q Consensus 610 ~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~----~~p~~l~~l~~L~~L~Ls~N~l~~~~p----~~ 677 (893)
+.|+.++..+|++..- +...|...+.|+.+.++.|.|.. .+...|..|+.|+.|||..|-++..-. ..
T Consensus 157 ~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Laka 236 (382)
T KOG1909|consen 157 PKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKA 236 (382)
T ss_pred cceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHH
Confidence 4455555555554322 22334445556666666665431 223455666677777777776654332 33
Q ss_pred hhhccCccccccccccCCCcccccc-----cCCcccceeeCCCCcCCCC----CchhhhcCCCCCEEEccCCcc
Q 002679 678 LEKLIHLSELDLSHNFLGKEIPSQI-----CNMRSLEMLNLSHNNLSDF----IPRCFEEMNGLLYIDISYNEL 742 (893)
Q Consensus 678 l~~l~~L~~L~Ls~N~l~~~~p~~~-----~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~l~ls~N~l 742 (893)
+..+++|++|++++|.+.......| ...|+|++|.+.+|.++.. +...+...+.|..|+|++|.+
T Consensus 237 L~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 237 LSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred hcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 4455667777777776655433222 2356777777777777643 334445566677777777765
No 36
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=2.3e-10 Score=118.33 Aligned_cols=208 Identities=29% Similarity=0.348 Sum_probs=102.1
Q ss_pred cCCCCCCeeecCCCcCCCCCC-CCCCCCCCCCEEEccCCCCccccC--CCCCCCCCCCeEEccCCcCCCCccc-ccCCCc
Q 002679 296 GNLKSLSILELGENRLNGSIP-LSLGNLTNLDTLYLYTNSLSGSIP--SEIGNLKSLSGLELADNELSSSIPH-YLGNLT 371 (893)
Q Consensus 296 ~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~~--~~l~~l~~L~~L~ls~n~l~~~~~~-~l~~l~ 371 (893)
+++.+|+++.|.++....... .....|++++.|+|+.|-++...+ .....+|+|+.|+++.|.+...... .-..+
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l- 196 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL- 196 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh-
Confidence 456677777777776642211 234456666777776665543211 2234566666666666655432111 01123
Q ss_pred ccceEecccccCCCCCCccccccccCceeccCCcccccc-CCccccCCCccceeecccccccccCChhhhcccccccccC
Q 002679 372 NLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGS-IPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQL 450 (893)
Q Consensus 372 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L 450 (893)
++|+.|.++.|.++-. +......+|+|+.|+|..|.....-......+..|++|||
T Consensus 197 -----------------------~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdL 253 (505)
T KOG3207|consen 197 -----------------------SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDL 253 (505)
T ss_pred -----------------------hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccc
Confidence 3444444444444311 1112234455555555555322222222333445566666
Q ss_pred CCCCcCCCc-cccCCCCCccceEEcccCcCcccC-Ccc-----ccCCCCCCEEecCCCcCcC--CCCCcCCCCCCCEEEc
Q 002679 451 GDNKLSNSI-SHSLGNLTHMTLLALYDNALSGVI-PEE-----LGNLVKLTMLTLSDNQLQG--SIPNLRNLTNLIRLRL 521 (893)
Q Consensus 451 s~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~~-~~~-----~~~l~~L~~L~Ls~n~l~~--~~~~l~~~~~L~~L~l 521 (893)
++|++.... ....+.++.|..|+++.+.+...- |+. ...+++|++|+++.|++.. .+..+..+++|+.|.+
T Consensus 254 s~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~ 333 (505)
T KOG3207|consen 254 SNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRI 333 (505)
T ss_pred cCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhc
Confidence 665554321 123445566666666666655432 211 2456677777777777742 2223444555555555
Q ss_pred CCCcCC
Q 002679 522 NRNHLT 527 (893)
Q Consensus 522 ~~n~l~ 527 (893)
..|.+.
T Consensus 334 ~~n~ln 339 (505)
T KOG3207|consen 334 TLNYLN 339 (505)
T ss_pred cccccc
Confidence 555543
No 37
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=1.9e-10 Score=118.96 Aligned_cols=135 Identities=25% Similarity=0.237 Sum_probs=56.2
Q ss_pred CCCCCcEEeccCCcccccCC--cCcCCCCCccEEEccCCccCCCCCCCc-CCCCCccEEEccCCcccc-cCCccccCccc
Q 002679 536 IHPKLTFIDLSHNNFYGQIS--SDWGKCPNLGTFDVSVNNIIGSLPPEI-GDSSQLHVIDLSANHIIG-KIPSEIGKLSS 611 (893)
Q Consensus 536 ~~~~L~~L~ls~n~l~~~~~--~~~~~~~~L~~L~ls~n~l~~~~p~~l-~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~ 611 (893)
.+++++.||++.|-++...+ .....+++|+.|+++.|++........ ..++.|+.|.++.|.++- .+...+..+|+
T Consensus 144 ~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPs 223 (505)
T KOG3207|consen 144 ILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPS 223 (505)
T ss_pred hCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCc
Confidence 44455555555544432211 112334455555555554432222111 124455555555555541 11122233455
Q ss_pred ceeEEeccccccCCCcccccCCcccceecCCCCcccccc-cccccCCCCCCeeecccCcC
Q 002679 612 LIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSI-PRSLGNLVKLHYLNLSTNQF 670 (893)
Q Consensus 612 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~Ls~N~l 670 (893)
|+.|+|..|...........-+..|++|||++|++.... -...+.++.|+.|+++.+.+
T Consensus 224 l~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi 283 (505)
T KOG3207|consen 224 LEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGI 283 (505)
T ss_pred HHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCc
Confidence 555555555422222222333444555555555544211 01234444455555554444
No 38
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.87 E-value=4e-10 Score=110.47 Aligned_cols=136 Identities=28% Similarity=0.329 Sum_probs=98.0
Q ss_pred ccccccccCceeccCCccccccCCccccCCCccceeecccccccccCChhhhcccccccccCCCCCcCCCccccCCCCCc
Q 002679 389 SEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTH 468 (893)
Q Consensus 389 ~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~ 468 (893)
..+..++.|+++|+|+|.++ .+.++..-.|.++.|++++|.+... ..+..+++|+.||+++|.++. +..+-..+.+
T Consensus 278 ~~~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~-~~Gwh~KLGN 353 (490)
T KOG1259|consen 278 VSADTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAE-CVGWHLKLGN 353 (490)
T ss_pred EecchHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhHh-hhhhHhhhcC
Confidence 33445577888888888887 5566677778888888888888743 337778888888888887764 2333445677
Q ss_pred cceEEcccCcCcccCCccccCCCCCCEEecCCCcCcCC--CCCcCCCCCCCEEEcCCCcCCCCC
Q 002679 469 MTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGS--IPNLRNLTNLIRLRLNRNHLTCNI 530 (893)
Q Consensus 469 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~--~~~l~~~~~L~~L~l~~n~l~~~~ 530 (893)
++.|.++.|.+... ..++.+-+|..||+++|++... ...+++++.|+.+.+.+|++.+..
T Consensus 354 IKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 354 IKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred EeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence 88888888877643 4566777888888888888653 236777777777777777776543
No 39
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.85 E-value=3.4e-09 Score=75.22 Aligned_cols=41 Identities=37% Similarity=0.902 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCC-CCCCCccCceeeC
Q 002679 35 TEEVHALLKWKTSLQNHDKGSLLPSWTLNNAT-KISPCAWFGIHCN 79 (893)
Q Consensus 35 ~~~~~~ll~~k~~~~~~~~~~~l~~W~~~~~~-~~~~c~w~gv~c~ 79 (893)
++|++||++||+++..++ .+.+.+|+ .. ..+||+|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~-~~~l~~W~---~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDP-SGVLSSWN---PSSDSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC--CCCTT-----TT--S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhccccc-CcccccCC---CcCCCCCeeeccEEeC
Confidence 689999999999998655 67899998 22 2799999999996
No 40
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.75 E-value=9.3e-10 Score=122.81 Aligned_cols=19 Identities=21% Similarity=0.205 Sum_probs=10.3
Q ss_pred cccccCceeccCCcccccc
Q 002679 392 GNLKSLSNLDLSENKLSGS 410 (893)
Q Consensus 392 ~~l~~L~~L~Ls~n~l~~~ 410 (893)
...+.++.+.+..|.....
T Consensus 302 ~~~~~~~~~~~~~~~~~~~ 320 (414)
T KOG0531|consen 302 SAAPTLVTLTLELNPIRKI 320 (414)
T ss_pred cccccccccccccCccccc
Confidence 3345566666666655543
No 41
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.74 E-value=1.6e-09 Score=120.91 Aligned_cols=36 Identities=39% Similarity=0.588 Sum_probs=16.6
Q ss_pred ccccccccccCCCcccccccCCcccceeeCCCCcCCC
Q 002679 684 LSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSD 720 (893)
Q Consensus 684 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 720 (893)
|+.+++++|++.. ++..+..+..++.||+++|++..
T Consensus 234 L~~l~l~~n~i~~-~~~~~~~~~~l~~l~~~~n~~~~ 269 (414)
T KOG0531|consen 234 LRELYLSGNRISR-SPEGLENLKNLPVLDLSSNRISN 269 (414)
T ss_pred HHHHhcccCcccc-ccccccccccccccchhhccccc
Confidence 4455555555422 12333444455555555555544
No 42
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.73 E-value=4.4e-09 Score=81.90 Aligned_cols=59 Identities=41% Similarity=0.640 Sum_probs=33.3
Q ss_pred CccccccccccCCCcccccccCCcccceeeCCCCcCCCCCchhhhcCCCCCEEEccCCc
Q 002679 683 HLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNE 741 (893)
Q Consensus 683 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~ 741 (893)
+|++|++++|+++...+..|..+++|++|++++|+++...|..|..+++|+++++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 44555555555554444555555555555555555555555555555556666665554
No 43
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.71 E-value=5.8e-09 Score=81.25 Aligned_cols=60 Identities=38% Similarity=0.514 Sum_probs=41.8
Q ss_pred CCCeeecccCcCCcccchhhhhccCccccccccccCCCcccccccCCcccceeeCCCCcC
Q 002679 659 KLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNL 718 (893)
Q Consensus 659 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 718 (893)
+|+.|++++|+++...+..|.++++|++|++++|.++...|..|..+++|++|++++|+|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 566667777766666666667777777777777777666666777777777777777764
No 44
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.51 E-value=3.1e-09 Score=116.21 Aligned_cols=199 Identities=23% Similarity=0.200 Sum_probs=121.4
Q ss_pred CCCCcEEeccCCcccccC-CcCcCCCCCccEEEccCCccCCCCCCCcCC-CCCccEEEccCCccc----------ccCCc
Q 002679 537 HPKLTFIDLSHNNFYGQI-SSDWGKCPNLGTFDVSVNNIIGSLPPEIGD-SSQLHVIDLSANHII----------GKIPS 604 (893)
Q Consensus 537 ~~~L~~L~ls~n~l~~~~-~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~-l~~L~~L~Ls~n~l~----------~~~p~ 604 (893)
+++++.+.+-.-.-.+.. |-.+..+.+|++|.+.++.+... ..+.. -..|+.|... |.+. |.+..
T Consensus 83 lqkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~~--~GL~~lr~qLe~LIC~-~Sl~Al~~v~ascggd~~n 159 (1096)
T KOG1859|consen 83 LQKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLSTA--KGLQELRHQLEKLICH-NSLDALRHVFASCGGDISN 159 (1096)
T ss_pred HhhheeeeecccCCCCCCCCceeccccceeeEEecCcchhhh--hhhHHHHHhhhhhhhh-ccHHHHHHHHHHhcccccc
Confidence 345555555443333322 55566778888888888877541 11111 0123333221 1110 11111
Q ss_pred cccCcccceeEEeccccccCCCcccccCCcccceecCCCCcccccccccccCCCCCCeeecccCcCCcccchhhhhccCc
Q 002679 605 EIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHL 684 (893)
Q Consensus 605 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 684 (893)
.+ ....|...+.+.|.+. ...+.+.-++.|+.|||++|+++.. +.+..|+.|+.|||++|.+....--...++. |
T Consensus 160 s~-~Wn~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L 234 (1096)
T KOG1859|consen 160 SP-VWNKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-L 234 (1096)
T ss_pred ch-hhhhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhh-h
Confidence 11 1234566677777764 3345566777888888888888754 3677888888888888887665554555555 8
Q ss_pred cccccccccCCCcccccccCCcccceeeCCCCcCCCCC-chhhhcCCCCCEEEccCCccccc
Q 002679 685 SELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFI-PRCFEEMNGLLYIDISYNELHGP 745 (893)
Q Consensus 685 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~l~ls~N~l~g~ 745 (893)
+.|+|++|.++.. ..+.++++|+.||+++|-|++.- -..+..+.+|..|.|.+||+.|.
T Consensus 235 ~~L~lrnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~ 294 (1096)
T KOG1859|consen 235 QLLNLRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCA 294 (1096)
T ss_pred eeeeecccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccC
Confidence 8888888887654 34667888888888888887652 23345566788888888887653
No 45
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.35 E-value=2.1e-08 Score=110.00 Aligned_cols=197 Identities=24% Similarity=0.238 Sum_probs=117.0
Q ss_pred CCCCCEEEcCCCcCCCCC-CccccCCCCCcEEeccCCcccccCCcCcCCC-CCccEEEccCCccC----------CCCCC
Q 002679 513 LTNLIRLRLNRNHLTCNI-SESFGIHPKLTFIDLSHNNFYGQISSDWGKC-PNLGTFDVSVNNII----------GSLPP 580 (893)
Q Consensus 513 ~~~L~~L~l~~n~l~~~~-~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~-~~L~~L~ls~n~l~----------~~~p~ 580 (893)
+++++.+.+-.-.-.+.. |-.+..+.+|+.|.+.++.+... ..+..+ ..|+.|-. .|.+. |.+..
T Consensus 83 lqkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~~--~GL~~lr~qLe~LIC-~~Sl~Al~~v~ascggd~~n 159 (1096)
T KOG1859|consen 83 LQKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLSTA--KGLQELRHQLEKLIC-HNSLDALRHVFASCGGDISN 159 (1096)
T ss_pred HhhheeeeecccCCCCCCCCceeccccceeeEEecCcchhhh--hhhHHHHHhhhhhhh-hccHHHHHHHHHHhcccccc
Confidence 445555555443322222 55566778999999999987531 111110 12222211 11110 11110
Q ss_pred CcCCCCCccEEEccCCcccccCCccccCcccceeEEeccccccCCCcccccCCcccceecCCCCcccccccc-cccCCCC
Q 002679 581 EIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPR-SLGNLVK 659 (893)
Q Consensus 581 ~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~-~l~~l~~ 659 (893)
++ ....|.+.+.+.|.+. .....+.-++.|+.|+|++|+++... .+..++.|+.|||+.|.+.. +|. ....|.
T Consensus 160 s~-~Wn~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~-vp~l~~~gc~- 233 (1096)
T KOG1859|consen 160 SP-VWNKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRH-VPQLSMVGCK- 233 (1096)
T ss_pred ch-hhhhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhcc-ccccchhhhh-
Confidence 00 1234666777777775 44456666777888888888876554 56678888888888888773 332 223344
Q ss_pred CCeeecccCcCCcccchhhhhccCccccccccccCCCccc-ccccCCcccceeeCCCCcCCC
Q 002679 660 LHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIP-SQICNMRSLEMLNLSHNNLSD 720 (893)
Q Consensus 660 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~ 720 (893)
|..|.+++|.++.. ..+.++.+|+.||+++|-|.+.-. .-+..+.+|..|+|.+|++--
T Consensus 234 L~~L~lrnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 234 LQLLNLRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC 293 (1096)
T ss_pred heeeeecccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence 88888888877543 456778888888888887766421 234566778888888887753
No 46
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.21 E-value=1.1e-07 Score=82.95 Aligned_cols=115 Identities=20% Similarity=0.210 Sum_probs=57.8
Q ss_pred CCcccceecCCCCcccccccccccCCCCCCeeecccCcCCcccchhhhhccCccccccccccCCCcccccccCCccccee
Q 002679 632 SLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEML 711 (893)
Q Consensus 632 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 711 (893)
....|+..+|++|.+...-+..-...+.++.|+|++|.+ ..+|.++..++.|+.|+++.|.+.. .|..+..+.++-+|
T Consensus 51 ~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~nei-sdvPeE~Aam~aLr~lNl~~N~l~~-~p~vi~~L~~l~~L 128 (177)
T KOG4579|consen 51 KGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEI-SDVPEELAAMPALRSLNLRFNPLNA-EPRVIAPLIKLDML 128 (177)
T ss_pred CCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhh-hhchHHHhhhHHhhhcccccCcccc-chHHHHHHHhHHHh
Confidence 334455555555555532222222334556666666665 3445556666666666666666633 33344446666666
Q ss_pred eCCCCcCCCCCchhhhcCCCCCEEEccCCcccccCCCC
Q 002679 712 NLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIPNS 749 (893)
Q Consensus 712 ~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~g~ip~~ 749 (893)
|..+|.+..+.-+ +-.-+.....++.++++.+.+|-+
T Consensus 129 ds~~na~~eid~d-l~~s~~~al~~lgnepl~~~~~~k 165 (177)
T KOG4579|consen 129 DSPENARAEIDVD-LFYSSLPALIKLGNEPLGDETKKK 165 (177)
T ss_pred cCCCCccccCcHH-HhccccHHHHHhcCCcccccCccc
Confidence 6666655543322 211122333345566666666544
No 47
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.07 E-value=2e-08 Score=98.84 Aligned_cols=178 Identities=22% Similarity=0.209 Sum_probs=79.6
Q ss_pred CCCEEeCCCCCCCCC-CCccccCCCCCCeecCCCccCCCCCCCCCCCCCCCCEEeCCCcc-CCCC-CCcccCCCCCCCEE
Q 002679 132 KLKYLDLSSNSFSGT-IPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQ-LSGP-IPHEVGGLSSLNEL 208 (893)
Q Consensus 132 ~L~~L~Ls~n~~~~~-~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~-~p~~~~~l~~L~~L 208 (893)
+|++||||...++.. +-.-++.|.+|+.|.|.++++...+-..+++-.+|+.|+++.+. ++.. ..-.+.+|+.|.+|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 466666666555421 11223455666666666666655555555555666666555543 1110 00123344444444
Q ss_pred EccCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEccCCCCC---CCCCCcCCCCCCCCEEEeecC
Q 002679 209 ALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLC---GSIPLFLGNLTNLDTLYLRNN 285 (893)
Q Consensus 209 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~---~~~p~~l~~l~~L~~L~L~~n 285 (893)
+++++.+....-..+- ..+ -++|+.|+++++.-. ..+..-...+++|..|||++|
T Consensus 266 NlsWc~l~~~~Vtv~V--------------------~hi--se~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~ 323 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAV--------------------AHI--SETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDS 323 (419)
T ss_pred CchHhhccchhhhHHH--------------------hhh--chhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccc
Confidence 4444443322111000 000 134444555443211 001111224555666666554
Q ss_pred C-CCCCCCccccCCCCCCeeecCCCcCCCCCCCC---CCCCCCCCEEEccCC
Q 002679 286 S-FSSSIPSEIGNLKSLSILELGENRLNGSIPLS---LGNLTNLDTLYLYTN 333 (893)
Q Consensus 286 ~-l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~---~~~l~~L~~L~L~~n 333 (893)
. ++...-..|.+++.|++|.++.|.. .+|.. +...|.|.+|++.++
T Consensus 324 v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 324 VMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred cccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence 3 2222223345556666666665543 33432 344566677766554
No 48
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.05 E-value=2.1e-08 Score=98.68 Aligned_cols=106 Identities=25% Similarity=0.196 Sum_probs=77.1
Q ss_pred CCCEEECCCCCCCcc-CCccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCeecCCCcc-CCCC-CCCCCCCCCCCCEE
Q 002679 108 HLAYLDLQVNQIFGI-IPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQ-FSGR-IPPQIGHLSYIEAL 184 (893)
Q Consensus 108 ~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~-l~~~-~p~~l~~l~~L~~L 184 (893)
.|++|||++..++.. +-..++.|.+|+.|.|.++++.+.+-..+.+-.+|+.|+|+.+. ++.. .---+.+|+.|+.|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 599999999988753 33456789999999999999999998899999999999999875 2211 11125789999999
Q ss_pred eCCCccCCCCCCcc-cCC-CCCCCEEEccCC
Q 002679 185 HLFKNQLSGPIPHE-VGG-LSSLNELALTSN 213 (893)
Q Consensus 185 ~L~~n~l~~~~p~~-~~~-l~~L~~L~L~~n 213 (893)
++++|.+....-.. +.. -++|+.|++++.
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~ 296 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGY 296 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhh
Confidence 99999876543211 111 134555555553
No 49
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.01 E-value=6e-07 Score=88.65 Aligned_cols=86 Identities=28% Similarity=0.300 Sum_probs=57.4
Q ss_pred CCCCCCEEECCCCCCCcc--CCccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCeecCCCccCCCC-CCCCCCCCCCC
Q 002679 105 SFPHLAYLDLQVNQIFGI--IPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGR-IPPQIGHLSYI 181 (893)
Q Consensus 105 ~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L 181 (893)
..++++.+||.+|.++.. +..-+.++++|++|+|+.|.+...|-..-..+.+|++|-|.+..+.-. ....+..++.+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 457888888888888764 444567888888888888887643321113556788888877766422 22345666777
Q ss_pred CEEeCCCcc
Q 002679 182 EALHLFKNQ 190 (893)
Q Consensus 182 ~~L~L~~n~ 190 (893)
+.|+++.|.
T Consensus 149 telHmS~N~ 157 (418)
T KOG2982|consen 149 TELHMSDNS 157 (418)
T ss_pred hhhhhccch
Confidence 777777663
No 50
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.97 E-value=4.5e-07 Score=88.33 Aligned_cols=87 Identities=25% Similarity=0.324 Sum_probs=49.2
Q ss_pred CCCCCCEEECCCCCCCcc----CCccccCCCCCCEEeCCCCCCCCC----CC-------ccccCCCCCCeecCCCccCCC
Q 002679 105 SFPHLAYLDLQVNQIFGI----IPPQIGNISKLKYLDLSSNSFSGT----IP-------PQIGNLSMLKFLYLSANQFSG 169 (893)
Q Consensus 105 ~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~~~~~----~p-------~~l~~l~~L~~L~L~~n~l~~ 169 (893)
.+..++.+|||+|.|... +...+.+-.+|++.++|.- ++|. +| .++-+|++|+..+||.|.+..
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~ 106 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS 106 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence 355666666666666433 3334445566666666643 2221 22 234566777777777777665
Q ss_pred CCCCC----CCCCCCCCEEeCCCccCC
Q 002679 170 RIPPQ----IGHLSYIEALHLFKNQLS 192 (893)
Q Consensus 170 ~~p~~----l~~l~~L~~L~L~~n~l~ 192 (893)
..|+. +++-+.|++|.+++|.+.
T Consensus 107 ~~~e~L~d~is~~t~l~HL~l~NnGlG 133 (388)
T COG5238 107 EFPEELGDLISSSTDLVHLKLNNNGLG 133 (388)
T ss_pred ccchHHHHHHhcCCCceeEEeecCCCC
Confidence 55543 345566777777666543
No 51
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.92 E-value=1.3e-06 Score=76.33 Aligned_cols=137 Identities=25% Similarity=0.299 Sum_probs=85.4
Q ss_pred ccEEEccCCcccccCCc---cccCcccceeEEeccccccCCCcccccCCcccceecCCCCcccccccccccCCCCCCeee
Q 002679 588 LHVIDLSANHIIGKIPS---EIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLN 664 (893)
Q Consensus 588 L~~L~Ls~n~l~~~~p~---~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 664 (893)
+..+||+.|++. .+++ .+.....|+..+|++|.+....+..-...+.++.|++++|.++ .+|..+..++.|+.|+
T Consensus 29 ~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 29 LHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLN 106 (177)
T ss_pred hhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcc
Confidence 344556666553 2222 2333455666677777766554444445567788888888887 4677788888888888
Q ss_pred cccCcCCcccchhhhhccCccccccccccCCCcccccccCCcccceeeCCCCcCCCCCchhhhc
Q 002679 665 LSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEE 728 (893)
Q Consensus 665 Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~ 728 (893)
++.|.+... |..+..+.+|-.||..+|.+.. ||..+-.-+..-..++.++.+.+.-+..++.
T Consensus 107 l~~N~l~~~-p~vi~~L~~l~~Lds~~na~~e-id~dl~~s~~~al~~lgnepl~~~~~~klqa 168 (177)
T KOG4579|consen 107 LRFNPLNAE-PRVIAPLIKLDMLDSPENARAE-IDVDLFYSSLPALIKLGNEPLGDETKKKLQA 168 (177)
T ss_pred cccCccccc-hHHHHHHHhHHHhcCCCCcccc-CcHHHhccccHHHHHhcCCcccccCcccccc
Confidence 888887543 4555558888888888887743 3333322233334456778887776655543
No 52
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.88 E-value=1e-06 Score=87.13 Aligned_cols=63 Identities=17% Similarity=0.237 Sum_probs=30.3
Q ss_pred CCCCeEEccCCcCCCC-cccccCCCcccceEecccccCCCC-CCccccccccCceeccCCccccc
Q 002679 347 KSLSGLELADNELSSS-IPHYLGNLTNLAAFYLYKNSLSGS-IPSEIGNLKSLSNLDLSENKLSG 409 (893)
Q Consensus 347 ~~L~~L~ls~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~Ls~n~l~~ 409 (893)
+++..+-+..|.+... -...+..+|.+..|+|+.+++... --+++.++++|..|.++++.+.+
T Consensus 199 pnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 199 PNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred ccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence 4455555555544332 112334445555555655555421 11234555666666666665543
No 53
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.78 E-value=1.7e-06 Score=84.35 Aligned_cols=138 Identities=23% Similarity=0.211 Sum_probs=70.4
Q ss_pred ccccccCceeccCCccccccCCcc----ccCCCccceeecccccccccCChh-------------hhcccccccccCCCC
Q 002679 391 IGNLKSLSNLDLSENKLSGSIPHS----LGNLTNLAILYLHSNTLLGSIPRE-------------IGNLKSLFELQLGDN 453 (893)
Q Consensus 391 l~~l~~L~~L~Ls~n~l~~~~~~~----l~~l~~L~~L~L~~n~l~~~~~~~-------------~~~~~~L~~L~Ls~n 453 (893)
+.+|++|+..+||+|-+....|+. ++.-+.|++|.+++|.+...-... ..+-|.|+......|
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN 167 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN 167 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc
Confidence 455666666677666665554433 334566777777776654221111 123455666666666
Q ss_pred CcCCCcc----ccCCCCCccceEEcccCcCccc-----CCccccCCCCCCEEecCCCcCcCCCC-----CcCCCCCCCEE
Q 002679 454 KLSNSIS----HSLGNLTHMTLLALYDNALSGV-----IPEELGNLVKLTMLTLSDNQLQGSIP-----NLRNLTNLIRL 519 (893)
Q Consensus 454 ~l~~~~~----~~l~~l~~L~~L~L~~n~l~~~-----~~~~~~~l~~L~~L~Ls~n~l~~~~~-----~l~~~~~L~~L 519 (893)
++..-.. ..+..-..|+.+.+..|.|.-. +-..+..+.+|+.|||.+|.++-.-. .+...+.|+.|
T Consensus 168 Rlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL 247 (388)
T COG5238 168 RLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLREL 247 (388)
T ss_pred hhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhc
Confidence 6543111 1122224566666666655421 11123345666666666666553211 23334445666
Q ss_pred EcCCCcCCC
Q 002679 520 RLNRNHLTC 528 (893)
Q Consensus 520 ~l~~n~l~~ 528 (893)
.+..|-++.
T Consensus 248 ~lnDClls~ 256 (388)
T COG5238 248 RLNDCLLSN 256 (388)
T ss_pred cccchhhcc
Confidence 666655543
No 54
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.69 E-value=2.7e-05 Score=55.29 Aligned_cols=35 Identities=49% Similarity=0.756 Sum_probs=15.2
Q ss_pred ccccccccccCCCcccccccCCcccceeeCCCCcCC
Q 002679 684 LSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLS 719 (893)
Q Consensus 684 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 719 (893)
|++|++++|+|+. +|..++++++|++|++++|+++
T Consensus 3 L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 3 LEELDLSNNQITD-LPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp -SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCS
T ss_pred ceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCC
Confidence 4444444444432 2333444555555555555444
No 55
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.66 E-value=8.2e-05 Score=79.73 Aligned_cols=137 Identities=19% Similarity=0.213 Sum_probs=76.4
Q ss_pred cCCCCCccEEEccCCccCCCCCCCcCCCCCccEEEccCCcccccCCccccCcccceeEEeccccccCCCcccccCCcccc
Q 002679 558 WGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLE 637 (893)
Q Consensus 558 ~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 637 (893)
+..|.+++.|++++|.++ .+|. -..+|+.|+++++.-...+|..+. ++|++|++++|.....+| .+|+
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP------~sLe 115 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLP------ESVR 115 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCcccccccc------cccc
Confidence 445688888999888665 3352 234688888887654445665442 578888888873333333 3466
Q ss_pred eecCCCCccc--ccccccccCCCCCCeeecccCcCC--cccchhhhhccCccccccccccCCCcccccccCCcccceeeC
Q 002679 638 YLDLSSNRLS--NSIPRSLGNLVKLHYLNLSTNQFI--QEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNL 713 (893)
Q Consensus 638 ~L~Ls~n~l~--~~~p~~l~~l~~L~~L~Ls~N~l~--~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 713 (893)
.|+++.+... +.+| ++|+.|.+.+++.. ..+|.. -..+|++|++++|.... .|..+. .+|++|++
T Consensus 116 ~L~L~~n~~~~L~~LP------ssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i~-LP~~LP--~SLk~L~l 184 (426)
T PRK15386 116 SLEIKGSATDSIKNVP------NGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNII-LPEKLP--ESLQSITL 184 (426)
T ss_pred eEEeCCCCCcccccCc------chHhheeccccccccccccccc--cCCcccEEEecCCCccc-Cccccc--ccCcEEEe
Confidence 6666655442 1223 24556666433211 111110 11467777777776542 333332 46777777
Q ss_pred CCCc
Q 002679 714 SHNN 717 (893)
Q Consensus 714 s~N~ 717 (893)
+.|.
T Consensus 185 s~n~ 188 (426)
T PRK15386 185 HIEQ 188 (426)
T ss_pred cccc
Confidence 7663
No 56
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.60 E-value=4.2e-05 Score=54.28 Aligned_cols=36 Identities=44% Similarity=0.707 Sum_probs=16.0
Q ss_pred CCCEEECCCCCCCccCCccccCCCCCCEEeCCCCCCC
Q 002679 108 HLAYLDLQVNQIFGIIPPQIGNISKLKYLDLSSNSFS 144 (893)
Q Consensus 108 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~ 144 (893)
+|++|++++|+|+. +|..+++|++|++|++++|+++
T Consensus 2 ~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCC
Confidence 44555555555543 2333445555555555555444
No 57
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.57 E-value=0.00023 Score=76.40 Aligned_cols=35 Identities=11% Similarity=0.155 Sum_probs=18.9
Q ss_pred ccCCCCCCEEecCCCcCcCCCCCcCCCCCCCEEEcCCC
Q 002679 487 LGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRN 524 (893)
Q Consensus 487 ~~~l~~L~~L~Ls~n~l~~~~~~l~~~~~L~~L~l~~n 524 (893)
+..+..++.|++++|.+... |. -.++|+.|.+++|
T Consensus 48 ~~~~~~l~~L~Is~c~L~sL-P~--LP~sLtsL~Lsnc 82 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESL-PV--LPNELTEITIENC 82 (426)
T ss_pred HHHhcCCCEEEeCCCCCccc-CC--CCCCCcEEEccCC
Confidence 34456677777777755432 21 1234666666554
No 58
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.33 E-value=0.00027 Score=66.71 Aligned_cols=105 Identities=25% Similarity=0.234 Sum_probs=72.9
Q ss_pred CcccceecCCCCcccccccccccCCCCCCeeecccCcCCcccchhhhhccCccccccccccCCCcc-cccccCCccccee
Q 002679 633 LIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEI-PSQICNMRSLEML 711 (893)
Q Consensus 633 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L 711 (893)
..+...+||++|.+... ..|..++.|..|.|++|+|+.+-|.--.-++.|++|.|.+|.|.... -..+..+|.|++|
T Consensus 41 ~d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL 118 (233)
T ss_pred ccccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCcccee
Confidence 44566777888777643 45777788888888888888777776677777888888888775431 1335677888888
Q ss_pred eCCCCcCCCCCc---hhhhcCCCCCEEEccC
Q 002679 712 NLSHNNLSDFIP---RCFEEMNGLLYIDISY 739 (893)
Q Consensus 712 ~Ls~N~l~~~~p---~~l~~l~~L~~l~ls~ 739 (893)
.+-+|+.+..-- ..+..+++|+.||++.
T Consensus 119 tll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 119 TLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred eecCCchhcccCceeEEEEecCcceEeehhh
Confidence 888887765421 2345567778887764
No 59
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.26 E-value=0.00043 Score=63.39 Aligned_cols=101 Identities=15% Similarity=0.252 Sum_probs=33.8
Q ss_pred cccccCCcccceecCCCCcccccccccccCCCCCCeeecccCcCCcccchhhhhccCccccccccccCCCcccccccCCc
Q 002679 627 PSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMR 706 (893)
Q Consensus 627 ~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 706 (893)
...|.++++|+.+++.++ +......+|.++++++.+++.+ .+.......|..++.|+.+++..+ +.......|.++
T Consensus 28 ~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~- 103 (129)
T PF13306_consen 28 ENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC- 103 (129)
T ss_dssp TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--
T ss_pred hhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCcc-ccEEchhhhcCC-
Confidence 333444444444444442 3333333444444455555543 222223333444445555555443 333333444444
Q ss_pred ccceeeCCCCcCCCCCchhhhcCCCC
Q 002679 707 SLEMLNLSHNNLSDFIPRCFEEMNGL 732 (893)
Q Consensus 707 ~L~~L~Ls~N~l~~~~p~~l~~l~~L 732 (893)
.|+.+.+.. .+.......|.++++|
T Consensus 104 ~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 104 NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp T--EEE-TT-B-SS----GGG-----
T ss_pred CceEEEECC-CccEECCccccccccC
Confidence 555555543 3444444445444443
No 60
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.25 E-value=0.0004 Score=63.58 Aligned_cols=86 Identities=12% Similarity=0.152 Sum_probs=39.1
Q ss_pred CccCCCCCCCCEEECCCCCCCccCCccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCeecCCCccCCCCCCCCCCCCC
Q 002679 100 DFSFSSFPHLAYLDLQVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLS 179 (893)
Q Consensus 100 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~ 179 (893)
+.+|.++++|+.+.+.. .+..+-..+|.++++|+.+++..+ +...-...|.++.+|+.+.+.. .+.......|.+++
T Consensus 5 ~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~ 81 (129)
T PF13306_consen 5 NNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCT 81 (129)
T ss_dssp TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-T
T ss_pred HHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccc
Confidence 35666666777777663 455555556666666777766654 4433334556665666666654 22222223444455
Q ss_pred CCCEEeCCC
Q 002679 180 YIEALHLFK 188 (893)
Q Consensus 180 ~L~~L~L~~ 188 (893)
+|+.+++..
T Consensus 82 ~l~~i~~~~ 90 (129)
T PF13306_consen 82 NLKNIDIPS 90 (129)
T ss_dssp TECEEEETT
T ss_pred cccccccCc
Confidence 555555443
No 61
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.17 E-value=0.00012 Score=85.58 Aligned_cols=134 Identities=19% Similarity=0.223 Sum_probs=69.6
Q ss_pred CCCCEEeCCCCCCC-CCCCcccc-CCCCCCeecCCCccCCCC-CCCCCCCCCCCCEEeCCCccCCCCCCcccCCCCCCCE
Q 002679 131 SKLKYLDLSSNSFS-GTIPPQIG-NLSMLKFLYLSANQFSGR-IPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNE 207 (893)
Q Consensus 131 ~~L~~L~Ls~n~~~-~~~p~~l~-~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 207 (893)
.+|++||+++.... ..=|..++ .||+|+.|.+++-.+... .-....++++|+.||+|+++++.. ..++++++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 45666666554321 11122232 356666666655443211 112234556666666666665544 45556666666
Q ss_pred EEccCCCCCC-CCCCCCCCCCCCCEEEccCCcCCCCC--C----ccccCCCCCCEEEccCCCCCCC
Q 002679 208 LALTSNFLKG-SIPPSLGNLTNLAILYLHNNSLSGSI--P----SEIGNLKSLSSLALGNNKLCGS 266 (893)
Q Consensus 208 L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~--~----~~l~~l~~L~~L~Ls~n~l~~~ 266 (893)
|.+.+=.+.. ..-..+.++++|++||+|........ . +.-..+|+|+.||.|++.+.+.
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~ 265 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEE 265 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHH
Confidence 6655544432 12234556777777777765433211 0 1112478899999998777643
No 62
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.11 E-value=0.00067 Score=64.07 Aligned_cols=59 Identities=24% Similarity=0.290 Sum_probs=34.8
Q ss_pred CCCEEECCCCCCCccCCccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCeecCCCccCC
Q 002679 108 HLAYLDLQVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFS 168 (893)
Q Consensus 108 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~ 168 (893)
....+||++|.+... ..|..+++|.+|.|++|+|+.+-|.--.-+++|+.|.|.+|++.
T Consensus 43 ~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~ 101 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ 101 (233)
T ss_pred ccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh
Confidence 445566666666443 34556666677777777666444433344556666666666554
No 63
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.11 E-value=0.00018 Score=84.02 Aligned_cols=112 Identities=24% Similarity=0.285 Sum_probs=53.2
Q ss_pred cccceeEEeccccccCC-CcccccCCcccceecCCCCcccccccccccCCCCCCeeecccCcCCc-ccchhhhhccCccc
Q 002679 609 LSSLIKLILRRNQLFGQ-LPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQ-EIPIKLEKLIHLSE 686 (893)
Q Consensus 609 l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~ 686 (893)
+|+|+.|.+++=.+... ....+.++++|..||+|+.+++.. ..++++++|+.|.+.+=.+.. ..-..+.+|++|++
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~v 224 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRV 224 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCe
Confidence 44444444444333211 122233555555555555555533 445555555555555544432 22334455566666
Q ss_pred cccccccCCCcc--c----ccccCCcccceeeCCCCcCCCCC
Q 002679 687 LDLSHNFLGKEI--P----SQICNMRSLEMLNLSHNNLSDFI 722 (893)
Q Consensus 687 L~Ls~N~l~~~~--p----~~~~~l~~L~~L~Ls~N~l~~~~ 722 (893)
||+|........ . +.-..+|.|+.||.|+..+.+.+
T Consensus 225 LDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~ 266 (699)
T KOG3665|consen 225 LDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEI 266 (699)
T ss_pred eeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHH
Confidence 666655443221 1 11224566666666665555443
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.91 E-value=0.00043 Score=68.36 Aligned_cols=82 Identities=26% Similarity=0.348 Sum_probs=41.3
Q ss_pred CCCCEEECCCCCCCccCCccccCCCCCCEEeCCCC--CCCCCCCccccCCCCCCeecCCCccCCCCCCCC---CCCCCCC
Q 002679 107 PHLAYLDLQVNQIFGIIPPQIGNISKLKYLDLSSN--SFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQ---IGHLSYI 181 (893)
Q Consensus 107 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n--~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~---l~~l~~L 181 (893)
..|+.|++.+..++.. ..|..|++|++|.+|.| .+++.++.-..++++|++|++++|++.- +.. +..+.+|
T Consensus 43 ~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~nL 118 (260)
T KOG2739|consen 43 VELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELENL 118 (260)
T ss_pred cchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhhhcch
Confidence 3344444444433322 23445566666666666 4444444444555666666666666541 222 3344455
Q ss_pred CEEeCCCccCC
Q 002679 182 EALHLFKNQLS 192 (893)
Q Consensus 182 ~~L~L~~n~l~ 192 (893)
..|++.+|..+
T Consensus 119 ~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 119 KSLDLFNCSVT 129 (260)
T ss_pred hhhhcccCCcc
Confidence 55555555444
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.79 E-value=0.00071 Score=66.86 Aligned_cols=102 Identities=25% Similarity=0.342 Sum_probs=60.1
Q ss_pred CCcccceecCCCCcccccccccccCCCCCCeeecccC--cCCcccchhhhhccCccccccccccCCCccccc---ccCCc
Q 002679 632 SLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTN--QFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQ---ICNMR 706 (893)
Q Consensus 632 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N--~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~---~~~l~ 706 (893)
.+..|+.|.+.+..++.. ..|..+++|+.|++|.| ++.+..+.....+++|++|++++|++.. +++ +..+.
T Consensus 41 ~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~ 116 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELE 116 (260)
T ss_pred cccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhhhc
Confidence 444555555555555432 34556667777777777 5566555555666777777777777753 222 34455
Q ss_pred ccceeeCCCCcCCCCCc---hhhhcCCCCCEEEc
Q 002679 707 SLEMLNLSHNNLSDFIP---RCFEEMNGLLYIDI 737 (893)
Q Consensus 707 ~L~~L~Ls~N~l~~~~p---~~l~~l~~L~~l~l 737 (893)
+|.+||+.+|.-+..-. ..|.-+++|+++|-
T Consensus 117 nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~ 150 (260)
T KOG2739|consen 117 NLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDG 150 (260)
T ss_pred chhhhhcccCCccccccHHHHHHHHhhhhccccc
Confidence 66677777776665421 23444556666543
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.65 E-value=0.00031 Score=69.29 Aligned_cols=100 Identities=23% Similarity=0.221 Sum_probs=61.2
Q ss_pred CcccceecCCCCcccccccccccCCCCCCeeecccCcCCcccchhhhhccCccccccccccCCCccc-ccccCCccccee
Q 002679 633 LIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIP-SQICNMRSLEML 711 (893)
Q Consensus 633 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L 711 (893)
+.+.+.|++.+|.+.++ .-...++.|+.|.||-|+|+..-| +..++.|++|+|..|.|..... .-+.++++|+.|
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 34445555555555543 233456666777777776655433 5567777777777777654422 345677888888
Q ss_pred eCCCCcCCCCCch-----hhhcCCCCCEEE
Q 002679 712 NLSHNNLSDFIPR-----CFEEMNGLLYID 736 (893)
Q Consensus 712 ~Ls~N~l~~~~p~-----~l~~l~~L~~l~ 736 (893)
+|..|+-.|.-+. .+.-+++|++||
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc
Confidence 8888887776553 344566777665
No 67
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=96.40 E-value=0.00015 Score=75.79 Aligned_cols=82 Identities=18% Similarity=0.072 Sum_probs=36.1
Q ss_pred CCCEEEccCCCCccccC--CCCCCCCCCCeEEccCCcC-CCCcc-cccCCCcccceEecccc-cCCCCCCc-cccccccC
Q 002679 324 NLDTLYLYTNSLSGSIP--SEIGNLKSLSGLELADNEL-SSSIP-HYLGNLTNLAAFYLYKN-SLSGSIPS-EIGNLKSL 397 (893)
Q Consensus 324 ~L~~L~L~~n~l~~~~~--~~l~~l~~L~~L~ls~n~l-~~~~~-~~l~~l~~L~~L~L~~n-~l~~~~~~-~l~~l~~L 397 (893)
.|+.|.+.++.-.+.-+ ....+++++++|++.++.. +...- ..-..+++|+++++..| .++...-. -...|++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 45666666654433211 1224566666666666542 11111 11123555666655552 22211111 12345555
Q ss_pred ceeccCCc
Q 002679 398 SNLDLSEN 405 (893)
Q Consensus 398 ~~L~Ls~n 405 (893)
++++++.+
T Consensus 219 ~~lNlSwc 226 (483)
T KOG4341|consen 219 KYLNLSWC 226 (483)
T ss_pred HHhhhccC
Confidence 55555555
No 68
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=96.19 E-value=0.0002 Score=74.77 Aligned_cols=38 Identities=29% Similarity=0.246 Sum_probs=24.8
Q ss_pred CCcccceecCCCCcccc-cccccccCCCCCCeeecccCc
Q 002679 632 SLIQLEYLDLSSNRLSN-SIPRSLGNLVKLHYLNLSTNQ 669 (893)
Q Consensus 632 ~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~Ls~N~ 669 (893)
.+..|..+.|++++... ..-..+..+++|+.+++-.++
T Consensus 399 ~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 399 SLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred cccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 45667777777776532 233456677788888777665
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.00 E-value=0.00055 Score=67.61 Aligned_cols=100 Identities=25% Similarity=0.142 Sum_probs=69.9
Q ss_pred cccceeEEeccccccCCCcccccCCcccceecCCCCcccccccccccCCCCCCeeecccCcCCcccc-hhhhhccCcccc
Q 002679 609 LSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIP-IKLEKLIHLSEL 687 (893)
Q Consensus 609 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L 687 (893)
+.+.++|++.+|.+..+. .+..++.|++|.||-|+|+..- .+..|++|+.|+|..|.|...-. ..+.++++|++|
T Consensus 18 l~~vkKLNcwg~~L~DIs--ic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS--ICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHHH--HHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 345566777777665442 2347788888888888888653 47788889999999888755332 336788899999
Q ss_pred ccccccCCCccccc-----ccCCcccceee
Q 002679 688 DLSHNFLGKEIPSQ-----ICNMRSLEMLN 712 (893)
Q Consensus 688 ~Ls~N~l~~~~p~~-----~~~l~~L~~L~ 712 (893)
.|..|.-.|.-+.. +.-+|+|+.||
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc
Confidence 99999877765432 34566666664
No 70
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=94.82 E-value=0.0019 Score=74.31 Aligned_cols=13 Identities=31% Similarity=0.350 Sum_probs=6.5
Q ss_pred CCCCCeEEccCCc
Q 002679 346 LKSLSGLELADNE 358 (893)
Q Consensus 346 l~~L~~L~ls~n~ 358 (893)
++.|++|+++.+.
T Consensus 294 ~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 294 CPSLRELDLSGCH 306 (482)
T ss_pred cCcccEEeeecCc
Confidence 4445555555443
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.73 E-value=0.012 Score=34.67 Aligned_cols=10 Identities=60% Similarity=0.524 Sum_probs=3.8
Q ss_pred cccccccccC
Q 002679 685 SELDLSHNFL 694 (893)
Q Consensus 685 ~~L~Ls~N~l 694 (893)
++|||++|++
T Consensus 3 ~~Ldls~n~l 12 (22)
T PF00560_consen 3 EYLDLSGNNL 12 (22)
T ss_dssp SEEEETSSEE
T ss_pred cEEECCCCcC
Confidence 3333333333
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.73 E-value=0.01 Score=34.89 Aligned_cols=21 Identities=52% Similarity=0.781 Sum_probs=13.1
Q ss_pred ccceeeCCCCcCCCCCchhhhc
Q 002679 707 SLEMLNLSHNNLSDFIPRCFEE 728 (893)
Q Consensus 707 ~L~~L~Ls~N~l~~~~p~~l~~ 728 (893)
+|++|||++|+++ .+|..|++
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT
T ss_pred CccEEECCCCcCE-eCChhhcC
Confidence 3667777777777 55555543
No 73
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=94.55 E-value=0.0024 Score=73.53 Aligned_cols=62 Identities=16% Similarity=0.108 Sum_probs=29.4
Q ss_pred CCCCCEEEccCCC-CccccCCCCC-CCCCCCeEEccCCc-CCCC-cccccCCCcccceEecccccC
Q 002679 322 LTNLDTLYLYTNS-LSGSIPSEIG-NLKSLSGLELADNE-LSSS-IPHYLGNLTNLAAFYLYKNSL 383 (893)
Q Consensus 322 l~~L~~L~L~~n~-l~~~~~~~l~-~l~~L~~L~ls~n~-l~~~-~~~~l~~l~~L~~L~L~~n~l 383 (893)
+++|+.|+++.+. ++...-..+. .+++|+.|.+.++. ++.. +......++.|++|+++++..
T Consensus 242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 4555556655554 3322211222 25666666655554 3332 112233455666666665543
No 74
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.19 E-value=0.001 Score=74.44 Aligned_cols=132 Identities=28% Similarity=0.267 Sum_probs=70.1
Q ss_pred ceeEEeccccccCC----CcccccCCcccceecCCCCcccc----ccccccc----CCCCCCeeecccCcCCcccc----
Q 002679 612 LIKLILRRNQLFGQ----LPSELGSLIQLEYLDLSSNRLSN----SIPRSLG----NLVKLHYLNLSTNQFIQEIP---- 675 (893)
Q Consensus 612 L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~----~~p~~l~----~l~~L~~L~Ls~N~l~~~~p---- 675 (893)
++.|++..|.+++. +.+.+.....++.++++.|.+.. .++..+. ...+++.|++++|.++...-
T Consensus 146 l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~ 225 (478)
T KOG4308|consen 146 LQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLD 225 (478)
T ss_pred HHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHH
Confidence 34444444444332 23334445556666666665421 1222222 35566777777776653221
Q ss_pred hhhhhccC-ccccccccccCCCc----ccccccCC-cccceeeCCCCcCCCCCc----hhhhcCCCCCEEEccCCccc
Q 002679 676 IKLEKLIH-LSELDLSHNFLGKE----IPSQICNM-RSLEMLNLSHNNLSDFIP----RCFEEMNGLLYIDISYNELH 743 (893)
Q Consensus 676 ~~l~~l~~-L~~L~Ls~N~l~~~----~p~~~~~l-~~L~~L~Ls~N~l~~~~p----~~l~~l~~L~~l~ls~N~l~ 743 (893)
..+...++ +..|++.+|.+.+. ....+..+ ..++.++++.|.++..-. ..+..+..++.+.+++|++.
T Consensus 226 ~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 226 EVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred HHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 22334444 56677777777543 23334444 566777777777776533 33444566777777777654
No 75
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.40 E-value=0.0013 Score=73.65 Aligned_cols=187 Identities=27% Similarity=0.284 Sum_probs=103.6
Q ss_pred CCCEEEcCCCcCCCCCCc----cccCCCCCcEEeccCCcccccCCc----CcCCC-CCccEEEccCCccCCCCCCCcCCC
Q 002679 515 NLIRLRLNRNHLTCNISE----SFGIHPKLTFIDLSHNNFYGQISS----DWGKC-PNLGTFDVSVNNIIGSLPPEIGDS 585 (893)
Q Consensus 515 ~L~~L~l~~n~l~~~~~~----~~~~~~~L~~L~ls~n~l~~~~~~----~~~~~-~~L~~L~ls~n~l~~~~p~~l~~l 585 (893)
.+..+.+.+|.+...... .+...+.|+.|+++.|.+...... .+... ..+++|++..|.+++.--
T Consensus 88 ~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~------ 161 (478)
T KOG4308|consen 88 SLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGA------ 161 (478)
T ss_pred hHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccch------
Confidence 367777777777654332 234456666677777666522111 11111 233344444444332211
Q ss_pred CCccEEEccCCcccccCCccccCcccceeEEeccccccC----CCcc----cccCCcccceecCCCCccccc----cccc
Q 002679 586 SQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFG----QLPS----ELGSLIQLEYLDLSSNRLSNS----IPRS 653 (893)
Q Consensus 586 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~----~~~~----~~~~l~~L~~L~Ls~n~l~~~----~p~~ 653 (893)
..+...+.....++.++++.|.+.. .++. .+....++++|++++|.++.. +-..
T Consensus 162 --------------~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~ 227 (478)
T KOG4308|consen 162 --------------APLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEV 227 (478)
T ss_pred --------------HHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHH
Confidence 1222333334555555555555421 1122 233466778888888776521 1123
Q ss_pred ccCCCC-CCeeecccCcCCcc----cchhhhhc-cCccccccccccCCCcc----cccccCCcccceeeCCCCcCCCC
Q 002679 654 LGNLVK-LHYLNLSTNQFIQE----IPIKLEKL-IHLSELDLSHNFLGKEI----PSQICNMRSLEMLNLSHNNLSDF 721 (893)
Q Consensus 654 l~~l~~-L~~L~Ls~N~l~~~----~p~~l~~l-~~L~~L~Ls~N~l~~~~----p~~~~~l~~L~~L~Ls~N~l~~~ 721 (893)
+...++ +..|++.+|.+... ....+..+ ..+++++++.|.++... ...+..++.++.|.+++|.+...
T Consensus 228 l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~ 305 (478)
T KOG4308|consen 228 LASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDY 305 (478)
T ss_pred HhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccH
Confidence 444455 66788888887543 22334444 56788999999887653 44556778899999999988765
No 76
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.32 E-value=0.0062 Score=58.82 Aligned_cols=88 Identities=19% Similarity=0.204 Sum_probs=53.9
Q ss_pred ccCCCCCCCCEEECCCCCCCccCCccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCeecCCCccCCCCCCCCCCCCCC
Q 002679 101 FSFSSFPHLAYLDLQVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSY 180 (893)
Q Consensus 101 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 180 (893)
.++..+...+.||++.|.+.. +-..|+-++.|..||++.|.+. ..|..++.+..++.+++..|..+ ..|.+++.++.
T Consensus 36 ~ei~~~kr~tvld~~s~r~vn-~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~ 112 (326)
T KOG0473|consen 36 REIASFKRVTVLDLSSNRLVN-LGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPH 112 (326)
T ss_pred hhhhccceeeeehhhhhHHHh-hccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCC
Confidence 455566666666666665533 2234555666666677766665 55666666666666666666555 56666666666
Q ss_pred CCEEeCCCccC
Q 002679 181 IEALHLFKNQL 191 (893)
Q Consensus 181 L~~L~L~~n~l 191 (893)
++++++..+.+
T Consensus 113 ~k~~e~k~~~~ 123 (326)
T KOG0473|consen 113 PKKNEQKKTEF 123 (326)
T ss_pred cchhhhccCcc
Confidence 66666555543
No 77
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=90.28 E-value=0.018 Score=55.75 Aligned_cols=87 Identities=23% Similarity=0.253 Sum_probs=60.5
Q ss_pred ccCCcccceecCCCCcccccccccccCCCCCCeeecccCcCCcccchhhhhccCccccccccccCCCcccccccCCcccc
Q 002679 630 LGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLE 709 (893)
Q Consensus 630 ~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 709 (893)
+......+.||++.|++.. .-..|.-++.|+.||++.|++ ...|..++++..+..+++..|.. ...|.+++..+.++
T Consensus 38 i~~~kr~tvld~~s~r~vn-~~~n~s~~t~~~rl~~sknq~-~~~~~d~~q~~e~~~~~~~~n~~-~~~p~s~~k~~~~k 114 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVN-LGKNFSILTRLVRLDLSKNQI-KFLPKDAKQQRETVNAASHKNNH-SQQPKSQKKEPHPK 114 (326)
T ss_pred hhccceeeeehhhhhHHHh-hccchHHHHHHHHHhccHhhH-hhChhhHHHHHHHHHHHhhccch-hhCCccccccCCcc
Confidence 4455666777777777652 334566667777888887775 45677777777777777777776 45677777777777
Q ss_pred eeeCCCCcCC
Q 002679 710 MLNLSHNNLS 719 (893)
Q Consensus 710 ~L~Ls~N~l~ 719 (893)
++++-.|.+.
T Consensus 115 ~~e~k~~~~~ 124 (326)
T KOG0473|consen 115 KNEQKKTEFF 124 (326)
T ss_pred hhhhccCcch
Confidence 7777777654
No 78
>KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=89.51 E-value=0.11 Score=56.69 Aligned_cols=52 Identities=19% Similarity=0.188 Sum_probs=34.2
Q ss_pred CccCHHHHHHHhcCCCcc-----cccchhhhh-------hhhhhhhHH----HHhcc----cccccccccCC
Q 002679 842 GKIVYEEIIRQRMVLMMS-----TALEKVDKE-------VYTKLIYLL----EKSLQ----SRNFIRHSQVR 893 (893)
Q Consensus 842 ~~lsy~dl~~aT~~f~~~-----~~l~~~~~~-------V~~~~~~~~----e~~~~----~~~f~rh~nlv 893 (893)
..++|+|+.+||++|+.. |..+.+|++ ||+|....- +++|. ..+.+||+|||
T Consensus 63 ~~fs~~el~~AT~~Fs~~~~ig~Ggfg~VYkG~l~~~~~vAVK~~~~~~~~~~~eF~~Ei~~ls~l~H~Nlv 134 (361)
T KOG1187|consen 63 RSFSYDELRKATNNFSESNLIGEGGFGTVYKGVLSDGTVVAVKRLSSNSGQGEREFLNEVEILSRLRHPNLV 134 (361)
T ss_pred ceeeHHHHHHHHhCCchhcceecCCCeEEEEEEECCCCEEEEEEecCCCCcchhHHHHHHHHHhcCCCcCcc
Confidence 568999999999999976 444555544 444433221 22233 44668999998
No 79
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=88.53 E-value=0.25 Score=26.86 Aligned_cols=12 Identities=50% Similarity=0.750 Sum_probs=4.0
Q ss_pred CCCEEeCCCCCC
Q 002679 132 KLKYLDLSSNSF 143 (893)
Q Consensus 132 ~L~~L~Ls~n~~ 143 (893)
+|+.|+|++|++
T Consensus 2 ~L~~L~l~~n~L 13 (17)
T PF13504_consen 2 NLRTLDLSNNRL 13 (17)
T ss_dssp T-SEEEETSS--
T ss_pred ccCEEECCCCCC
Confidence 344444444443
No 80
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=88.19 E-value=0.37 Score=29.53 Aligned_cols=22 Identities=41% Similarity=0.659 Sum_probs=14.0
Q ss_pred CcccceeeCCCCcCCCCCchhh
Q 002679 705 MRSLEMLNLSHNNLSDFIPRCF 726 (893)
Q Consensus 705 l~~L~~L~Ls~N~l~~~~p~~l 726 (893)
+++|++|+|++|+|+...+..|
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHc
Confidence 3566777777777776655544
No 81
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=88.19 E-value=0.37 Score=29.53 Aligned_cols=22 Identities=41% Similarity=0.659 Sum_probs=14.0
Q ss_pred CcccceeeCCCCcCCCCCchhh
Q 002679 705 MRSLEMLNLSHNNLSDFIPRCF 726 (893)
Q Consensus 705 l~~L~~L~Ls~N~l~~~~p~~l 726 (893)
+++|++|+|++|+|+...+..|
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHc
Confidence 3566777777777776655544
No 82
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=83.36 E-value=0.22 Score=29.91 Aligned_cols=14 Identities=50% Similarity=0.833 Sum_probs=5.2
Q ss_pred ccceeeCCCCcCCC
Q 002679 707 SLEMLNLSHNNLSD 720 (893)
Q Consensus 707 ~L~~L~Ls~N~l~~ 720 (893)
+|++|+|++|++++
T Consensus 3 ~L~~L~l~~n~i~~ 16 (24)
T PF13516_consen 3 NLETLDLSNNQITD 16 (24)
T ss_dssp T-SEEE-TSSBEHH
T ss_pred CCCEEEccCCcCCH
Confidence 34444444444433
No 83
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=82.75 E-value=0.46 Score=28.45 Aligned_cols=15 Identities=40% Similarity=0.494 Sum_probs=5.9
Q ss_pred CCCCeeecccCcCCc
Q 002679 658 VKLHYLNLSTNQFIQ 672 (893)
Q Consensus 658 ~~L~~L~Ls~N~l~~ 672 (893)
++|+.|+|++|+++.
T Consensus 2 ~~L~~L~l~~n~i~~ 16 (24)
T PF13516_consen 2 PNLETLDLSNNQITD 16 (24)
T ss_dssp TT-SEEE-TSSBEHH
T ss_pred CCCCEEEccCCcCCH
Confidence 344444444444433
No 84
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=81.98 E-value=1.2 Score=27.24 Aligned_cols=14 Identities=43% Similarity=0.536 Sum_probs=6.4
Q ss_pred CCCeeecccCcCCc
Q 002679 659 KLHYLNLSTNQFIQ 672 (893)
Q Consensus 659 ~L~~L~Ls~N~l~~ 672 (893)
+|+.|+|++|++..
T Consensus 3 ~L~~L~L~~N~l~~ 16 (26)
T smart00370 3 NLRELDLSNNQLSS 16 (26)
T ss_pred CCCEEECCCCcCCc
Confidence 44444444444433
No 85
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=81.98 E-value=1.2 Score=27.24 Aligned_cols=14 Identities=43% Similarity=0.536 Sum_probs=6.4
Q ss_pred CCCeeecccCcCCc
Q 002679 659 KLHYLNLSTNQFIQ 672 (893)
Q Consensus 659 ~L~~L~Ls~N~l~~ 672 (893)
+|+.|+|++|++..
T Consensus 3 ~L~~L~L~~N~l~~ 16 (26)
T smart00369 3 NLRELDLSNNQLSS 16 (26)
T ss_pred CCCEEECCCCcCCc
Confidence 44444444444433
No 86
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=78.14 E-value=1.3 Score=30.19 Aligned_cols=11 Identities=36% Similarity=0.268 Sum_probs=4.8
Q ss_pred EEEEehHHHHH
Q 002679 789 IWVVIVFPLLG 799 (893)
Q Consensus 789 ~~~~i~~~~~~ 799 (893)
+...+++++++
T Consensus 13 Ia~~VvVPV~v 23 (40)
T PF08693_consen 13 IAVGVVVPVGV 23 (40)
T ss_pred EEEEEEechHH
Confidence 33444444443
No 87
>PF12191 stn_TNFRSF12A: Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain; InterPro: IPR022316 The tumour necrosis factor (TNF) receptor (TNFR) superfamily comprises more than 20 type-I transmembrane proteins. Family members are defined based on similarity in their extracellular domain - a region that contains many cysteine residues arranged in a specific repetitive pattern []. The cysteines allow formation of an extended rod-like structure, responsible for ligand binding []. Upon receptor activation, different intracellular signalling complexes are assembled for different members of the TNFR superfamily, depending on their intracellular domains and sequences []. Activation of TNFRs can therefore induce a range of disparate effects, including cell proliferation, differentiation, survival, or apoptotic cell death, depending upon the receptor involved []. TNFRs are widely distributed and play important roles in many crucial biological processes, such as lymphoid and neuronal development, innate and adaptive immunity, and maintenance of cellular homeostasis []. Drugs that manipulate their signalling have potential roles in the prevention and treatment of many diseases, such as viral infections, coronary heart disease, transplant rejection, and immune disease []. TNF receptor 12 (also known as TWEAK receptor, and fibroblast growth factor-inducible-14 (Fn14)) has been implicated in endothelial cell growth and migration []. The receptor may also play a role in cell-matrix interactions [].; PDB: 2KN0_A 2RPJ_A 2KMZ_A 2EQP_A.
Probab=76.42 E-value=1.1 Score=38.87 Aligned_cols=12 Identities=17% Similarity=0.343 Sum_probs=4.6
Q ss_pred CCCCCCCCCCCC
Q 002679 766 LCGDIKGFQSCK 777 (893)
Q Consensus 766 lc~~~~~~~~C~ 777 (893)
.|...|....|.
T Consensus 54 sC~~~P~S~~C~ 65 (129)
T PF12191_consen 54 SCPAYPKSPFCQ 65 (129)
T ss_dssp CHCC-TT-CCCC
T ss_pred cCCCCCCCcccc
Confidence 344445444453
No 88
>PF15102 TMEM154: TMEM154 protein family
Probab=75.90 E-value=1.9 Score=38.98 Aligned_cols=11 Identities=27% Similarity=0.447 Sum_probs=6.1
Q ss_pred ccchhhhhhhh
Q 002679 861 ALEKVDKEVYT 871 (893)
Q Consensus 861 ~l~~~~~~V~~ 871 (893)
.+|.-++|+..
T Consensus 126 Emeeldkwm~s 136 (146)
T PF15102_consen 126 EMEELDKWMNS 136 (146)
T ss_pred hHHHHHhHHHh
Confidence 44555577653
No 89
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=73.78 E-value=2.1 Score=37.87 Aligned_cols=28 Identities=32% Similarity=0.483 Sum_probs=11.1
Q ss_pred EEehHHHHHHHHHHHHHHHHHHHHhhhhh
Q 002679 791 VVIVFPLLGTVALLISLIALFFIFRRRKN 819 (893)
Q Consensus 791 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 819 (893)
..|++++++.+ +.++++++|+++|+||+
T Consensus 67 ~~Ii~gv~aGv-Ig~Illi~y~irR~~Kk 94 (122)
T PF01102_consen 67 IGIIFGVMAGV-IGIILLISYCIRRLRKK 94 (122)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHHHHS--
T ss_pred eehhHHHHHHH-HHHHHHHHHHHHHHhcc
Confidence 34444444333 23333444555554444
No 90
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.05 E-value=1.4 Score=42.38 Aligned_cols=33 Identities=30% Similarity=0.187 Sum_probs=17.6
Q ss_pred CCCCeeecccCc-CCcccchhhhhccCccccccc
Q 002679 658 VKLHYLNLSTNQ-FIQEIPIKLEKLIHLSELDLS 690 (893)
Q Consensus 658 ~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~Ls 690 (893)
++|+.|++++|. |+..--..+..+++|+.|.|.
T Consensus 151 ~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~ 184 (221)
T KOG3864|consen 151 PSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLY 184 (221)
T ss_pred cchheeeccCCCeechhHHHHHHHhhhhHHHHhc
Confidence 456666666553 444444445555555555554
No 91
>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]
Probab=71.76 E-value=9.2 Score=41.84 Aligned_cols=27 Identities=22% Similarity=0.123 Sum_probs=18.8
Q ss_pred hhhhhhhhhHHHHhcc-------cccccccccCC
Q 002679 867 KEVYTKLIYLLEKSLQ-------SRNFIRHSQVR 893 (893)
Q Consensus 867 ~~V~~~~~~~~e~~~~-------~~~f~rh~nlv 893 (893)
+.||+|++|--+++.. +.=-++|.|+|
T Consensus 234 ~~VAVKifp~~~kqs~~~Ek~Iy~lp~m~h~nIl 267 (534)
T KOG3653|consen 234 RLVAVKIFPEQEKQSFQNEKNIYSLPGMKHENIL 267 (534)
T ss_pred ceeEEEecCHHHHHHHHhHHHHHhccCccchhHH
Confidence 7899999987777543 22346887764
No 92
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=69.80 E-value=3 Score=55.48 Aligned_cols=39 Identities=21% Similarity=0.193 Sum_probs=33.6
Q ss_pred eCCCCcCCCCCchhhhcCCCCCEEEccCCcccccCCCCc
Q 002679 712 NLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIPNST 750 (893)
Q Consensus 712 ~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~g~ip~~~ 750 (893)
||++|+|+.+.+..|..+.+|+.|+|++|+|.|.|...+
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~L~W 39 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGLAR 39 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccccccccHH
Confidence 678888888888888889999999999999999988654
No 93
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.96 E-value=1.2 Score=42.80 Aligned_cols=83 Identities=24% Similarity=0.251 Sum_probs=51.7
Q ss_pred CccEEEccCCcccccCCccccCcccceeEEeccccccCCC-cccc-cCCcccceecCCCCc-ccccccccccCCCCCCee
Q 002679 587 QLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQL-PSEL-GSLIQLEYLDLSSNR-LSNSIPRSLGNLVKLHYL 663 (893)
Q Consensus 587 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~-~~~~-~~l~~L~~L~Ls~n~-l~~~~p~~l~~l~~L~~L 663 (893)
.++.+|-++..+...--..+.++++++.|.+.+|.-.+.. -+.+ +-.++|+.|++++|. |+..--.++..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 4566777777666555556666777777777766532210 0001 134678888888774 665555577788888888
Q ss_pred ecccCc
Q 002679 664 NLSTNQ 669 (893)
Q Consensus 664 ~Ls~N~ 669 (893)
+|.+-.
T Consensus 182 ~l~~l~ 187 (221)
T KOG3864|consen 182 HLYDLP 187 (221)
T ss_pred HhcCch
Confidence 877543
No 94
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=68.37 E-value=1.7 Score=39.47 Aligned_cols=15 Identities=20% Similarity=0.377 Sum_probs=8.9
Q ss_pred ceEEEEehHHHHHHH
Q 002679 787 RKIWVVIVFPLLGTV 801 (893)
Q Consensus 787 ~~~~~~i~~~~~~~~ 801 (893)
+++++.+++++++++
T Consensus 48 knIVIGvVVGVGg~i 62 (154)
T PF04478_consen 48 KNIVIGVVVGVGGPI 62 (154)
T ss_pred ccEEEEEEecccHHH
Confidence 346666666665554
No 95
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=66.84 E-value=4.6 Score=34.22 Aligned_cols=10 Identities=10% Similarity=0.042 Sum_probs=4.2
Q ss_pred EEEEehHHHH
Q 002679 789 IWVVIVFPLL 798 (893)
Q Consensus 789 ~~~~i~~~~~ 798 (893)
.+..|+++++
T Consensus 67 aiagi~vg~~ 76 (96)
T PTZ00382 67 AIAGISVAVV 76 (96)
T ss_pred cEEEEEeehh
Confidence 3444444333
No 96
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=65.91 E-value=37 Score=37.35 Aligned_cols=19 Identities=16% Similarity=0.125 Sum_probs=10.0
Q ss_pred CccceeecccccccccCCh
Q 002679 419 TNLAILYLHSNTLLGSIPR 437 (893)
Q Consensus 419 ~~L~~L~L~~n~l~~~~~~ 437 (893)
+.+++++++.|.+....|.
T Consensus 165 pr~r~~dls~npi~dkvpi 183 (553)
T KOG4242|consen 165 PRARQHDLSPNPIGDKVPI 183 (553)
T ss_pred chhhhhccCCCcccccCCc
Confidence 3455566666655544443
No 97
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=65.06 E-value=4.5 Score=24.86 Aligned_cols=15 Identities=40% Similarity=0.620 Sum_probs=9.0
Q ss_pred cccceeeCCCCcCCC
Q 002679 706 RSLEMLNLSHNNLSD 720 (893)
Q Consensus 706 ~~L~~L~Ls~N~l~~ 720 (893)
++|+.|+|++|+|+.
T Consensus 2 ~~L~~L~L~~NkI~~ 16 (26)
T smart00365 2 TNLEELDLSQNKIKK 16 (26)
T ss_pred CccCEEECCCCccce
Confidence 456666666666643
No 98
>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A ....
Probab=63.15 E-value=4.4 Score=32.54 Aligned_cols=17 Identities=12% Similarity=0.034 Sum_probs=13.1
Q ss_pred CccCHHHHHHHhcCCCc
Q 002679 842 GKIVYEEIIRQRMVLMM 858 (893)
Q Consensus 842 ~~lsy~dl~~aT~~f~~ 858 (893)
...||+|=.+|-..|+.
T Consensus 55 DP~TYEDP~qAV~eFAk 71 (75)
T PF14575_consen 55 DPHTYEDPNQAVREFAK 71 (75)
T ss_dssp -GGGSSSHHHHHHHCSS
T ss_pred CcccccCHHHHHHHHHh
Confidence 55789999898887775
No 99
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=61.54 E-value=27 Score=38.33 Aligned_cols=38 Identities=18% Similarity=0.170 Sum_probs=17.9
Q ss_pred CcccceEecccccCCC----CCCccccccccCceeccCCccc
Q 002679 370 LTNLAAFYLYKNSLSG----SIPSEIGNLKSLSNLDLSENKL 407 (893)
Q Consensus 370 l~~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~Ls~n~l 407 (893)
-+.+..|++++|.... .+|.....-..++.+..+.|..
T Consensus 439 tqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~p 480 (553)
T KOG4242|consen 439 TQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNLP 480 (553)
T ss_pred CcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCCc
Confidence 3455666666665432 2333333333455555554443
No 100
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=56.20 E-value=9.6 Score=23.82 Aligned_cols=14 Identities=43% Similarity=0.634 Sum_probs=9.4
Q ss_pred CCCCEEeCCCCCCC
Q 002679 131 SKLKYLDLSSNSFS 144 (893)
Q Consensus 131 ~~L~~L~Ls~n~~~ 144 (893)
++|++|||++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 45677777777664
No 101
>PTZ00370 STEVOR; Provisional
Probab=52.24 E-value=15 Score=37.33 Aligned_cols=8 Identities=63% Similarity=1.356 Sum_probs=3.4
Q ss_pred HHHhhhhh
Q 002679 812 FIFRRRKN 819 (893)
Q Consensus 812 ~~~~~~~~ 819 (893)
|++|||++
T Consensus 277 wlyrrRK~ 284 (296)
T PTZ00370 277 WLYRRRKN 284 (296)
T ss_pred HHHHhhcc
Confidence 33444443
No 102
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=52.22 E-value=15 Score=37.22 Aligned_cols=8 Identities=50% Similarity=1.232 Sum_probs=3.4
Q ss_pred HHHhhhhh
Q 002679 812 FIFRRRKN 819 (893)
Q Consensus 812 ~~~~~~~~ 819 (893)
|++|||+.
T Consensus 281 WlyrrRK~ 288 (295)
T TIGR01478 281 WLYRRRKK 288 (295)
T ss_pred HHHHhhcc
Confidence 33444443
No 103
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=50.85 E-value=11 Score=23.08 Aligned_cols=13 Identities=38% Similarity=0.595 Sum_probs=7.5
Q ss_pred CCCEEeCCCCCCC
Q 002679 132 KLKYLDLSSNSFS 144 (893)
Q Consensus 132 ~L~~L~Ls~n~~~ 144 (893)
+|++|+.++|+++
T Consensus 3 ~L~~L~vs~N~Lt 15 (26)
T smart00364 3 SLKELNVSNNQLT 15 (26)
T ss_pred ccceeecCCCccc
Confidence 4555666666555
No 104
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=45.38 E-value=29 Score=33.75 Aligned_cols=16 Identities=25% Similarity=0.347 Sum_probs=8.6
Q ss_pred CceEEEEehHHHHHHH
Q 002679 786 SRKIWVVIVFPLLGTV 801 (893)
Q Consensus 786 ~~~~~~~i~~~~~~~~ 801 (893)
..+++++|+.++++|+
T Consensus 36 ~~~I~iaiVAG~~tVI 51 (221)
T PF08374_consen 36 YVKIMIAIVAGIMTVI 51 (221)
T ss_pred ceeeeeeeecchhhhH
Confidence 4455556655555444
No 105
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=42.78 E-value=34 Score=23.33 Aligned_cols=6 Identities=33% Similarity=0.600 Sum_probs=2.2
Q ss_pred HHHHHh
Q 002679 810 LFFIFR 815 (893)
Q Consensus 810 ~~~~~~ 815 (893)
.+.++|
T Consensus 27 ~~iYRK 32 (43)
T PF08114_consen 27 LFIYRK 32 (43)
T ss_pred HHHHHH
Confidence 333333
No 106
>PF15050 SCIMP: SCIMP protein
Probab=40.82 E-value=36 Score=29.43 Aligned_cols=11 Identities=18% Similarity=0.256 Sum_probs=6.0
Q ss_pred cCHHHHHHHhc
Q 002679 844 IVYEEIIRQRM 854 (893)
Q Consensus 844 lsy~dl~~aT~ 854 (893)
-+|+-+.++++
T Consensus 94 atYS~vnk~r~ 104 (133)
T PF15050_consen 94 ATYSLVNKVRN 104 (133)
T ss_pred chhhhhHhhcc
Confidence 45666655543
No 107
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=38.79 E-value=10 Score=28.93 Aligned_cols=10 Identities=60% Similarity=1.072 Sum_probs=0.4
Q ss_pred HHHHHHhhhh
Q 002679 809 ALFFIFRRRK 818 (893)
Q Consensus 809 ~~~~~~~~~~ 818 (893)
+.++++|+|+
T Consensus 29 Ilf~iyR~rk 38 (64)
T PF01034_consen 29 ILFLIYRMRK 38 (64)
T ss_dssp --------S-
T ss_pred HHHHHHHHHh
Confidence 3344444443
No 108
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=38.67 E-value=18 Score=40.48 Aligned_cols=37 Identities=32% Similarity=0.259 Sum_probs=18.4
Q ss_pred CCcccceecCCCCcccccc--cccccCCCCCCeeecccC
Q 002679 632 SLIQLEYLDLSSNRLSNSI--PRSLGNLVKLHYLNLSTN 668 (893)
Q Consensus 632 ~l~~L~~L~Ls~n~l~~~~--p~~l~~l~~L~~L~Ls~N 668 (893)
+.+.+..+.|++|++.... ..--...++|+.|+|++|
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 4455666667777664321 000112245666666666
No 109
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=37.70 E-value=28 Score=31.52 Aligned_cols=11 Identities=18% Similarity=0.389 Sum_probs=5.6
Q ss_pred HHHhhhhhhhc
Q 002679 812 FIFRRRKNALQ 822 (893)
Q Consensus 812 ~~~~~~~~~~~ 822 (893)
++++.||+.++
T Consensus 19 ~~~~~rRR~r~ 29 (130)
T PF12273_consen 19 FYCHNRRRRRR 29 (130)
T ss_pred HHHHHHHHhhc
Confidence 33456665543
No 110
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=35.92 E-value=12 Score=38.78 Aligned_cols=6 Identities=17% Similarity=-0.026 Sum_probs=0.0
Q ss_pred HHHHHh
Q 002679 810 LFFIFR 815 (893)
Q Consensus 810 ~~~~~~ 815 (893)
+++++|
T Consensus 167 ~icyrr 172 (290)
T PF05454_consen 167 CICYRR 172 (290)
T ss_dssp ------
T ss_pred HHhhhh
Confidence 333333
No 111
>PF14610 DUF4448: Protein of unknown function (DUF4448)
Probab=32.34 E-value=25 Score=34.30 Aligned_cols=15 Identities=27% Similarity=0.383 Sum_probs=9.6
Q ss_pred ceEEEEehHHHHHHH
Q 002679 787 RKIWVVIVFPLLGTV 801 (893)
Q Consensus 787 ~~~~~~i~~~~~~~~ 801 (893)
..+.++|++++++++
T Consensus 156 ~~~~laI~lPvvv~~ 170 (189)
T PF14610_consen 156 GKYALAIALPVVVVV 170 (189)
T ss_pred cceeEEEEccHHHHH
Confidence 345677777776555
No 112
>PF06365 CD34_antigen: CD34/Podocalyxin family; InterPro: IPR013836 This family consists of several mammalian CD34 antigen proteins. The CD34 antigen is a human leukocyte membrane protein expressed specifically by lymphohematopoietic progenitor cells. CD34 is a phosphoprotein. Activation of protein kinase C (PKC) has been found to enhance CD34 phosphorylation [, ]. This family contains several eukaryotic podocalyxin proteins. Podocalyxin is a major membrane protein of the glomerular epithelium and is thought to be involved in maintenance of the architecture of the foot processes and filtration slits characteristic of this unique epithelium by virtue of its high negative charge. Podocalyxin functions as an anti-adhesin that maintains an open filtration pathway between neighbouring foot processes in the glomerular epithelium by charge repulsion [].
Probab=32.16 E-value=68 Score=31.34 Aligned_cols=6 Identities=17% Similarity=-0.092 Sum_probs=2.3
Q ss_pred HHHHHh
Q 002679 810 LFFIFR 815 (893)
Q Consensus 810 ~~~~~~ 815 (893)
++++.|
T Consensus 122 Y~~~~R 127 (202)
T PF06365_consen 122 YCCHQR 127 (202)
T ss_pred HHhhhh
Confidence 333333
No 113
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=29.97 E-value=35 Score=37.72 Aligned_cols=30 Identities=23% Similarity=0.323 Sum_probs=13.8
Q ss_pred CceEEEEehHHHHHHHHHHHHHHHHHHHHh
Q 002679 786 SRKIWVVIVFPLLGTVALLISLIALFFIFR 815 (893)
Q Consensus 786 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 815 (893)
+...|..|.+++++||..+|-++.+||+.|
T Consensus 365 stgaIaGIsvavvvvVgglvGfLcWwf~cr 394 (397)
T PF03302_consen 365 STGAIAGISVAVVVVVGGLVGFLCWWFICR 394 (397)
T ss_pred cccceeeeeehhHHHHHHHHHHHhhheeec
Confidence 344455555554444433333444444444
No 114
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=29.40 E-value=72 Score=36.61 Aligned_cols=32 Identities=25% Similarity=0.474 Sum_probs=13.5
Q ss_pred ceEEEEehHHHHHHHHHHHHHHHHHHHHhhhh
Q 002679 787 RKIWVVIVFPLLGTVALLISLIALFFIFRRRK 818 (893)
Q Consensus 787 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (893)
..+|+++.+++-++++++++++++|.++|+.|
T Consensus 267 ~NlWII~gVlvPv~vV~~Iiiil~~~LCRk~K 298 (684)
T PF12877_consen 267 NNLWIIAGVLVPVLVVLLIIIILYWKLCRKNK 298 (684)
T ss_pred CCeEEEehHhHHHHHHHHHHHHHHHHHhcccc
Confidence 34555444433333323333344444454444
No 115
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=28.89 E-value=87 Score=25.59 Aligned_cols=6 Identities=33% Similarity=0.634 Sum_probs=2.3
Q ss_pred HHhhhh
Q 002679 813 IFRRRK 818 (893)
Q Consensus 813 ~~~~~~ 818 (893)
++++|+
T Consensus 54 CC~kRk 59 (94)
T PF05393_consen 54 CCKKRK 59 (94)
T ss_pred HHHHhh
Confidence 333333
No 116
>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]
Probab=28.56 E-value=14 Score=43.18 Aligned_cols=20 Identities=10% Similarity=0.072 Sum_probs=15.2
Q ss_pred cCCccCHHHHHHHhcCCCcc
Q 002679 840 FEGKIVYEEIIRQRMVLMMS 859 (893)
Q Consensus 840 ~~~~lsy~dl~~aT~~f~~~ 859 (893)
|....+|+|=-+|-..|+.+
T Consensus 606 YiDP~TYEDPnqAvreFakE 625 (996)
T KOG0196|consen 606 YIDPHTYEDPNQAVREFAKE 625 (996)
T ss_pred ecCCccccCccHHHHHhhhh
Confidence 44678899888888888764
No 117
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=25.04 E-value=37 Score=30.31 Aligned_cols=9 Identities=22% Similarity=0.368 Sum_probs=3.5
Q ss_pred HHHHHhhhh
Q 002679 810 LFFIFRRRK 818 (893)
Q Consensus 810 ~~~~~~~~~ 818 (893)
+|+-+||||
T Consensus 50 ~lcssRKkK 58 (189)
T PF05568_consen 50 YLCSSRKKK 58 (189)
T ss_pred HHHhhhhHH
Confidence 333334333
No 118
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=24.54 E-value=54 Score=19.84 Aligned_cols=11 Identities=45% Similarity=0.567 Sum_probs=5.7
Q ss_pred CCCCEEeCCCC
Q 002679 131 SKLKYLDLSSN 141 (893)
Q Consensus 131 ~~L~~L~Ls~n 141 (893)
++|++|+|+++
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 44555555554
No 119
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=23.98 E-value=61 Score=31.62 Aligned_cols=26 Identities=4% Similarity=0.268 Sum_probs=12.9
Q ss_pred EEEEehHHHHHHHHHHHHHHHHHHHH
Q 002679 789 IWVVIVFPLLGTVALLISLIALFFIF 814 (893)
Q Consensus 789 ~~~~i~~~~~~~~~~~~~~~~~~~~~ 814 (893)
..-+++.++++++.|+++++++.+.|
T Consensus 36 ~~~I~iaiVAG~~tVILVI~i~v~vR 61 (221)
T PF08374_consen 36 YVKIMIAIVAGIMTVILVIFIVVLVR 61 (221)
T ss_pred ceeeeeeeecchhhhHHHHHHHHHHH
Confidence 44445555555555555554444444
No 120
>KOG1219 consensus Uncharacterized conserved protein, contains laminin, cadherin and EGF domains [Signal transduction mechanisms]
Probab=21.60 E-value=1.8e+02 Score=39.18 Aligned_cols=27 Identities=19% Similarity=-0.044 Sum_probs=19.9
Q ss_pred chhhhcCCCCCEEEccCCcccccCCCC
Q 002679 723 PRCFEEMNGLLYIDISYNELHGPIPNS 749 (893)
Q Consensus 723 p~~l~~l~~L~~l~ls~N~l~g~ip~~ 749 (893)
|-+...|..=-.-...+|.+.|.||.+
T Consensus 3905 pC~snPC~~GgtCip~~n~f~CnC~~g 3931 (4289)
T KOG1219|consen 3905 PCASNPCLTGGTCIPFYNGFLCNCPNG 3931 (4289)
T ss_pred cccCCCCCCCCEEEecCCCeeEeCCCC
Confidence 444445555667788999999999965
No 121
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=21.44 E-value=51 Score=44.81 Aligned_cols=32 Identities=31% Similarity=0.277 Sum_probs=28.6
Q ss_pred ecccCcCCcccchhhhhccCccccccccccCC
Q 002679 664 NLSTNQFIQEIPIKLEKLIHLSELDLSHNFLG 695 (893)
Q Consensus 664 ~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 695 (893)
||++|+|+...+..|..+.+|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 68999998888888999999999999999874
No 122
>PF14991 MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P 2GUO_C 3MRQ_P 2GTW_C 3L6F_C 3MRP_P.
Probab=20.19 E-value=27 Score=29.99 Aligned_cols=11 Identities=36% Similarity=0.564 Sum_probs=0.0
Q ss_pred HHHHHHHHHhh
Q 002679 806 SLIALFFIFRR 816 (893)
Q Consensus 806 ~~~~~~~~~~~ 816 (893)
+++.+|+++||
T Consensus 40 LliGCWYckRR 50 (118)
T PF14991_consen 40 LLIGCWYCKRR 50 (118)
T ss_dssp -----------
T ss_pred HHHhheeeeec
Confidence 33444554443
Done!