Query 002679
Match_columns 893
No_of_seqs 555 out of 5726
Neff 10.2
Searched_HMMs 29240
Date Tue Mar 26 17:06:59 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002679.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1398-1402//hhsearch_pdb/002679hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 1.0 1 1 734.9 47.7 733 28-780 4-752 (768)
2 3rgz_A Protein brassinosteroid 1.0 1 1 590.7 34.9 654 83-747 78-744 (768)
3 1ziw_A TOLL-like receptor 3; i 1.0 1 1 513.6 48.4 608 87-756 9-635 (680)
4 3j0a_A TOLL-like receptor 5; m 1.0 1 1 504.5 39.0 659 105-888 22-742 (844)
5 1ziw_A TOLL-like receptor 3; i 1.0 1 1 491.4 46.7 586 82-721 25-624 (680)
6 3t6q_A CD180 antigen; protein- 1.0 1 1 449.1 43.3 528 107-756 33-572 (606)
7 3vq2_A TLR4, TOLL-like recepto 1.0 1 1 440.8 39.8 540 87-750 16-565 (606)
8 3t6q_A CD180 antigen; protein- 1.0 1 1 437.2 42.8 520 82-720 33-561 (606)
9 3j0a_A TOLL-like receptor 5; m 1.0 1 1 436.5 45.7 530 71-720 14-561 (844)
10 4eco_A Uncharacterized protein 1.0 1 1 426.1 24.0 81 33-119 27-117 (636)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=734.86 Aligned_cols=733 Identities=31% Similarity=0.450 Sum_probs=611.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCEEEEECCCCCCCCC---CCCCCCC
Q ss_conf 1345698888999999986079999999999998899999999844714528999899998699998443---4876578
Q 002679 28 LIVYSDSTEEVHALLKWKTSLQNHDKGSLLPSWTLNNATKISPCAWFGIHCNHVGRVNSINLTNVGLKGT---LHDFSFS 104 (893)
Q Consensus 28 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~W~~~~~~~~~~c~w~gv~c~~~~~v~~l~l~~~~~~~~---~~~~~~~ 104 (893)
++++++.++|++||++||+++.+ | . .+++|. .+.+||.|.||+|+ .++|+.+++++.++.|. ++ .++.
T Consensus 4 ~~~~~~~~~~~~all~~k~~~~~-~-~-~l~~W~----~~~~~C~w~gv~C~-~~~v~~L~L~~~~l~g~~~~l~-~~l~ 74 (768)
T 3rgz_A 4 ASPSQSLYREIHQLISFKDVLPD-K-N-LLPDWS----SNKNPCTFDGVTCR-DDKVTSIDLSSKPLNVGFSAVS-SSLL 74 (768)
T ss_dssp ----CCHHHHHHHHHHHHTTCSC-T-T-SSTTCC----TTSCGGGSTTEEEE-TTEEEEEECTTSCCCEEHHHHH-HHTT
T ss_pred CCCCCCCHHHHHHHHHHHHHCCC-C-C-CCCCCC----CCCCCCCCCCEEEC-CCCEEEEECCCCCCCCCCCCCC-HHHH
T ss_conf 76566878999999999966789-6-2-146878----99987688413878-9927898778998677557669-6573
Q ss_pred CCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCC--CCCCCCCCCEECCCCCCCCCCCCCCC-CCCCCC
Q ss_conf 999997998789977756972445999998985889879988982--24599999910178855799997878-989998
Q 002679 105 SFPHLAYLDLQVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPP--QIGNLSMLKFLYLSANQFSGRIPPQI-GHLSYI 181 (893)
Q Consensus 105 ~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~p~--~l~~l~~L~~L~L~~n~~~~~~p~~l-~~l~~L 181 (893)
.+++|+.++++.+.+.. .|..|+.+++|++|+|++|.+.+.+|. .++++++|++|++++|.+.+.+|..+ .++++|
T Consensus 75 ~L~~L~~l~~~~~~~~~-l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L 153 (768)
T 3rgz_A 75 SLTGLESLFLSNSHING-SVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSL 153 (768)
T ss_dssp TCTTCCEEECTTSCEEE-CCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTC
T ss_pred CCCCCCCCCCCCCCCCC-CCHHHCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCC
T ss_conf 16802246786888678-70332457889989898985787078967872788999898968826774797785638899
Q ss_pred CEEECCCCCCCCCCCCC---CCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEC
Q ss_conf 79969886578989844---579999989984588799989989889999888991078688889924469999979984
Q 002679 182 EALHLFKNQLSGPIPHE---VGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLAL 258 (893)
Q Consensus 182 ~~L~l~~~~~~~~~~~~---~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 258 (893)
++|++++|.+.+..+.. +.++++|++|++++|.+.+..+ +..+++|++|++++|.+.+..|. +.++++|++|++
T Consensus 154 ~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~L 230 (768)
T 3rgz_A 154 EVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDI 230 (768)
T ss_dssp SEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB--CTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEEC
T ss_pred CEEECCCCCCCCCCCHHHHHHCCCCCCCEEECCCCCCCCCCC--CCCCCCCCEEECCCCCCCCCCCC-CCCCCCCCEEEC
T ss_conf 989897983588587155664358988989897880346578--45478689898928827887711-126999998979
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCC-CCCCEEECCCCCCCC
Q ss_conf 5887999898767899988799942677788787455588888752069874778778888889-999879833788756
Q 002679 259 GNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNL-TNLDTLYLYTNSLSG 337 (893)
Q Consensus 259 ~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~l~~n~~~~ 337 (893)
++|.+.+..|..+..+++|+.|++++|.+.+..|.. .+++|+.|++++|.+.+.+|..+... ++|+.|++++|.+.+
T Consensus 231 s~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~ 308 (768)
T 3rgz_A 231 SGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYG 308 (768)
T ss_dssp CSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEE
T ss_pred CCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCC--CCCCCCEEECCCCCCCCCCCHHHHHHCCCCCEEECCCCCCCC
T ss_conf 488587816577744888898989888665716724--368789897917855772588888446868899896896778
Q ss_pred CCCCCCCCCCCCCEEECCCCCCCCCCCCC-CCCCCCCCEEECCCCCCCCCCCCCCCCCC-CCCEECCCCCCCCCCCCCCC
Q ss_conf 66898889999986974478678873445-67876553686146667798986556655-57410168862356578334
Q 002679 338 SIPSEIGNLKSLSGLELADNELSSSIPHY-LGNLTNLAAFYLYKNSLSGSIPSEIGNLK-SLSNLDLSENKLSGSIPHSL 415 (893)
Q Consensus 338 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~l 415 (893)
..|..+..+++|+.|++++|.+.+.+|.. +..+++|++|++++|.+.+.+|..+..++ +|+.|++++|.+++..+..+
T Consensus 309 ~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~ 388 (768)
T 3rgz_A 309 AVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNL 388 (768)
T ss_dssp CCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTT
T ss_pred CCCHHHHCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHHHHCCCCEEECCCCCCCCCCCHHH
T ss_conf 42367755877667789788525737978872488887884847843762309898632277199862787478767666
Q ss_pred CC--CCCCCEEECCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 57--7755526522462545678111066664543478887677755567778755668744686733587223488988
Q 002679 416 GN--LTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKL 493 (893)
Q Consensus 416 ~~--l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L 493 (893)
.. +++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.+++++|.+.+.+|..+..+++|
T Consensus 389 ~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L 468 (768)
T 3rgz_A 389 CQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTL 468 (768)
T ss_dssp TCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTC
T ss_pred HHCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHCCCCCC
T ss_conf 53324776189897784654248777568987989895884668546777449988989897881547189788287773
Q ss_pred CEEECCCCCCCCCCC-CCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCC
Q ss_conf 789658985767888-8689999988986788488778832248999869944587054558857688999648986578
Q 002679 494 TMLTLSDNQLQGSIP-NLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVN 572 (893)
Q Consensus 494 ~~L~Ls~n~~~~~~~-~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n 572 (893)
++|++++|.+.+..| .+..+++|++|++++|.+++..+..+..+++|+.|++++|.+++.+|..+..+++|+.+++++|
T Consensus 469 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N 548 (768)
T 3rgz_A 469 ETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTN 548 (768)
T ss_dssp CEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSS
T ss_pred EEEEECCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCC
T ss_conf 29990199513758878816998998975399518968768856899998989789433748877708898998989888
Q ss_pred CCCCCCCCCCCCCCCCCEEECCCCC-CCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCC
Q ss_conf 6679999786899986499856882-011288410476533268702664567786012588666541077774565532
Q 002679 573 NIIGSLPPEIGDSSQLHVIDLSANH-IIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIP 651 (893)
Q Consensus 573 ~~~~~~~~~l~~~~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 651 (893)
.+.+.+|..+.....+..+++.... +.................. ..+.+..+..+..+..+..++++.|.+.+.+|
T Consensus 549 ~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~ 625 (768)
T 3rgz_A 549 LFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNL---LEFQGIRSEQLNRLSTRNPCNITSRVYGGHTS 625 (768)
T ss_dssp EEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEE---EECTTCCGGGGGGGGGTCCSCTTSCEEEEECC
T ss_pred CCCCCCCHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC---CCCCCCCCHHHHCCCCCCCCCCCCCEECCCCC
T ss_conf 468827957860421223201345421111344432222332221---00135563232002321100113310046274
Q ss_pred CCCCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHCCCC
Q ss_conf 21248887984416468587565066540367651124433378740000258744661218888689877211112999
Q 002679 652 RSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNG 731 (893)
Q Consensus 652 ~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~ 731 (893)
..+..+++|+.||+++|++++.+|..++.++.|+.|+|++|.+++.+|..++.+++|++|||++|++++.+|..+..+++
T Consensus 626 ~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~ 705 (768)
T 3rgz_A 626 PTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTM 705 (768)
T ss_dssp CSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCC
T ss_pred HHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCC
T ss_conf 33403356657978588015558778841415787848688038878967847778998989788023868867757887
Q ss_pred CCEEECCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 9789732782300389992135320433137989988998988989988
Q 002679 732 LLYIDISYNELHGPIPNSTAFSDALMEALQGNEGLCGDIKGFQSCKASK 780 (893)
Q Consensus 732 L~~l~ls~N~l~~~~~~~~~~~~~~~~~~~gn~~lc~~~~~~~~C~~~~ 780 (893)
|+.+|+++|+++|.+|..++|.++...+|.||+.+||. |. ..|....
T Consensus 706 L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~-~l-~~C~~~~ 752 (768)
T 3rgz_A 706 LTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGY-PL-PRCDPSN 752 (768)
T ss_dssp CSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEEST-TS-CCCCSCC
T ss_pred CCEEECCCCCCCCCCCCCHHHCCCCHHHHCCCCHHCCC-CC-CCCCCCC
T ss_conf 89787968815560899601024897775698321088-77-6788876
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=590.68 Aligned_cols=654 Identities=30% Similarity=0.392 Sum_probs=567.6
Q ss_pred CEEEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCC--CCCCCCCCCEEECCCCCCCCCCCCCC-CCCCCCCE
Q ss_conf 8999986999984434876578999997998789977756972--44599999898588987998898224-59999991
Q 002679 83 RVNSINLTNVGLKGTLHDFSFSSFPHLAYLDLQVNQIFGIIPP--QIGNISKLKYLDLSSNSFSGTIPPQI-GNLSMLKF 159 (893)
Q Consensus 83 ~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~--~~~~l~~L~~L~Ls~n~~~~~~p~~l-~~l~~L~~ 159 (893)
++..++++.+++.. ++ ..|..+++|++|+|++|.+.+.+|. .++++++|++|++++|.+.+..|..+ .++++|++
T Consensus 78 ~L~~l~~~~~~~~~-l~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~ 155 (768)
T 3rgz_A 78 GLESLFLSNSHING-SV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEV 155 (768)
T ss_dssp TCCEEECTTSCEEE-CC-CCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSE
T ss_pred CCCCCCCCCCCCCC-CC-HHHCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCE
T ss_conf 02246786888678-70-33245788998989898578707896787278899989896882677479778563889998
Q ss_pred ECCCCCCCCCCCCCC---CCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCC
Q ss_conf 017885579999787---89899987996988657898984457999998998458879998998988999988899107
Q 002679 160 LYLSANQFSGRIPPQ---IGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHN 236 (893)
Q Consensus 160 L~L~~n~~~~~~p~~---l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~ 236 (893)
|++++|.+.+..|.. +.++++|++|++++|.+.+..+. .++++|++|++++|.+.+.++. +..+++|++|++++
T Consensus 156 L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~ 232 (768)
T 3rgz_A 156 LDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISG 232 (768)
T ss_dssp EECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC--TTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCS
T ss_pred EECCCCCCCCCCCHHHHHHCCCCCCCEEECCCCCCCCCCCC--CCCCCCCEEECCCCCCCCCCCC-CCCCCCCCEEECCC
T ss_conf 98979835885871556643589889898978803465784--5478689898928827887711-12699999897948
Q ss_pred CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCC-CCCCEEECCCCCCCCCC
Q ss_conf 86888899244699999799845887999898767899988799942677788787455588-88875206987477877
Q 002679 237 NSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNL-KSLSILELGENRLNGSI 315 (893)
Q Consensus 237 n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l-~~L~~L~L~~n~l~~~~ 315 (893)
|.+++..|..+..+++|++|++++|.+.+..|.. .+++|+.|++++|.+.+.+|..+... ++|+.|++++|.+.+..
T Consensus 233 n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~ 310 (768)
T 3rgz_A 233 NKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAV 310 (768)
T ss_dssp SCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECC
T ss_pred CCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCC--CCCCCCEEECCCCCCCCCCCHHHHHHCCCCCEEECCCCCCCCCC
T ss_conf 8587816577744888898989888665716724--36878989791785577258888844686889989689677842
Q ss_pred CCCCCCCCCCCEEECCCCCCCCCCCCC-CCCCCCCCEEECCCCCCCCCCCCCCCCCC-CCCEEECCCCCCCCCCCCCCCC
Q ss_conf 888888999987983378875666898-88999998697447867887344567876-5536861466677989865566
Q 002679 316 PLSLGNLTNLDTLYLYTNSLSGSIPSE-IGNLKSLSGLELADNELSSSIPHYLGNLT-NLAAFYLYKNSLSGSIPSEIGN 393 (893)
Q Consensus 316 ~~~~~~l~~L~~L~l~~n~~~~~~~~~-l~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~ 393 (893)
|..+..+++|+.|++++|.+.+.+|.. +..+++|+.|++++|.+.+.+|..+..++ +|+.|++++|.+.+..+..+..
T Consensus 311 p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~ 390 (768)
T 3rgz_A 311 PPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQ 390 (768)
T ss_dssp CGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTC
T ss_pred CHHHHCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHHHHCCCCEEECCCCCCCCCCCHHHHH
T ss_conf 36775587766778978852573797887248888788484784376230989863227719986278747876766653
Q ss_pred --CCCCCEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf --555741016886235657833457775552652246254567811106666454347888767775556777875566
Q 002679 394 --LKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTL 471 (893)
Q Consensus 394 --l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 471 (893)
+++|++|++++|.+++..|..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.
T Consensus 391 ~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 470 (768)
T 3rgz_A 391 NPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLET 470 (768)
T ss_dssp STTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCE
T ss_pred CCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHCCCCCCEE
T ss_conf 32477618989778465424877756898798989588466854677744998898989788154718978828777329
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC-CCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCC
Q ss_conf 8744686733587223488988789658985767888-868999998898678848877883224899986994458705
Q 002679 472 LALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIP-NLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNF 550 (893)
Q Consensus 472 L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~~~~~~~-~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l 550 (893)
+++++|.+.+.+|..+..+++|+.|++++|.+.+.+| .+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+
T Consensus 471 L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 550 (768)
T 3rgz_A 471 LILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLF 550 (768)
T ss_dssp EECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEE
T ss_pred EEECCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCC
T ss_conf 99019951375887881699899897539951896876885689999898978943374887770889899898988846
Q ss_pred CCCCCCCCCCCCCCCEEECCCCCCCCCC-CCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCC
Q ss_conf 4558857688999648986578667999-978689998649985688201128841047653326870266456778601
Q 002679 551 YGQISSDWGKCPNLGTFDVSVNNIIGSL-PPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSE 629 (893)
Q Consensus 551 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~-~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~ 629 (893)
++.+|..+.....+..+++....-...+ ..............+ .+.+..+..+..++.+..++++.|.+.+..|..
T Consensus 551 ~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~ 627 (768)
T 3rgz_A 551 NGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLL---EFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPT 627 (768)
T ss_dssp ESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEE---ECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCS
T ss_pred CCCCCHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC---CCCCCCCHHHHCCCCCCCCCCCCCEECCCCCHH
T ss_conf 88279578604212232013454211113444322223322210---013556323200232110011331004627433
Q ss_pred CCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 25886665410777745655322124888798441646858756506654036765112443337874000025874466
Q 002679 630 LGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLE 709 (893)
Q Consensus 630 ~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 709 (893)
+..+++|+.|++++|.+++.+|..++.++.|+.|+|++|.+++.+|..++.+++|+.|+|++|++++.+|..+..+++|+
T Consensus 628 ~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~ 707 (768)
T 3rgz_A 628 FDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLT 707 (768)
T ss_dssp CSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCS
T ss_pred HHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCC
T ss_conf 40335665797858801555877884141578784868803887896784777899898978802386886775788789
Q ss_pred EEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCC
Q ss_conf 12188886898772111129999789732782300389
Q 002679 710 MLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIP 747 (893)
Q Consensus 710 ~L~Ls~N~l~~~~~~~l~~l~~L~~l~ls~N~l~~~~~ 747 (893)
+||+++|+++|.+|..- .+..+....+.+|+.-|-.|
T Consensus 708 ~L~ls~N~l~g~iP~~~-~~~~~~~~~~~gN~~Lcg~~ 744 (768)
T 3rgz_A 708 EIDLSNNNLSGPIPEMG-QFETFPPAKFLNNPGLCGYP 744 (768)
T ss_dssp EEECCSSEEEEECCSSS-SGGGSCGGGGCSCTEEESTT
T ss_pred EEECCCCCCCCCCCCCH-HHCCCCHHHHCCCCHHCCCC
T ss_conf 78796881556089960-10248977756983210887
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=1.00 E-value=1 Score=513.63 Aligned_cols=608 Identities=24% Similarity=0.237 Sum_probs=361.9
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEECCCCCC
Q ss_conf 98699998443487657899999799878997775697244599999898588987998898224599999910178855
Q 002679 87 INLTNVGLKGTLHDFSFSSFPHLAYLDLQVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQ 166 (893)
Q Consensus 87 l~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~ 166 (893)
++.++.++. .+| ..+. +++++|++++|.+.+..+..|.++++|++|++++|.+.+..|..++++++|++|++++|.
T Consensus 9 ~~cs~~~L~-~ip-~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 84 (680)
T 1ziw_A 9 ADCSHLKLT-QVP-DDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 84 (680)
T ss_dssp EECCSSCCS-SCC-SCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSC
T ss_pred EECCCCCCC-CCC-CCCC--CCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCC
T ss_conf 487779805-264-1248--887688898997787597887178767588788996485697787406676888899985
Q ss_pred CCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCC
Q ss_conf 79999787898999879969886578989844579999989984588799989989889999888991078688889924
Q 002679 167 FSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSE 246 (893)
Q Consensus 167 ~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~ 246 (893)
+....+..++++++|++|++++|.+.+..+..|.++++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..
T Consensus 85 l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 164 (680)
T 1ziw_A 85 LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEE 164 (680)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHH
T ss_pred CCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCHHH
T ss_conf 67568545303888898989899668539667415678888989899524667211124556777974588436529788
Q ss_pred CC--CCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCC---CCCCCCCEEECCCCCCCCCCCCCCCC
Q ss_conf 46--99999799845887999898767899988799942677788787455---58888875206987477877888888
Q 002679 247 IG--NLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEI---GNLKSLSILELGENRLNGSIPLSLGN 321 (893)
Q Consensus 247 l~--~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l---~~l~~L~~L~L~~n~l~~~~~~~~~~ 321 (893)
+. .+++|+.|++++|.+.+..+..+..+.+|+.+++.++.+.......+ ...++|+.|++++|.+.+..+..+..
T Consensus 165 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~ 244 (680)
T 1ziw_A 165 LDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLG 244 (680)
T ss_dssp HGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGG
T ss_pred HHCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCCCCHHHHHC
T ss_conf 62446663217988898256558155532234455430566468056777877753151008874577436468667514
Q ss_pred CCC--CCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 999--987983378875666898889999986974478678873445678765536861466677989865566555741
Q 002679 322 LTN--LDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSN 399 (893)
Q Consensus 322 l~~--L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 399 (893)
++. |+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.+++.++...+.++. .
T Consensus 245 l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~--~------- 315 (680)
T 1ziw_A 245 LKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISL--A------- 315 (680)
T ss_dssp GGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC--------------
T ss_pred CCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCHHHHCCCCC--C-------
T ss_conf 6767788877878876756802116741056855778856765865626788855773633132133333--5-------
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCC
Q ss_conf 01688623565783345777555265224625456781110666645434788876777555677787556687446867
Q 002679 400 LDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNAL 479 (893)
Q Consensus 400 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 479 (893)
.+.......+..+++|+.|++++|.+.+..+..+.++++|+.|++++|.+...
T Consensus 316 ------~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~--------------------- 368 (680)
T 1ziw_A 316 ------SLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLR--------------------- 368 (680)
T ss_dssp -------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCC---------------------
T ss_pred ------CCCCCCHHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCHHHH---------------------
T ss_conf ------54543865624677788887989826878855740656872898879801443---------------------
Q ss_pred CCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC-CCC
Q ss_conf 3358722348898878965898576788886899999889867884887788322489998699445870545588-576
Q 002679 480 SGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQIS-SDW 558 (893)
Q Consensus 480 ~~~~~~~~~~~~~L~~L~Ls~n~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~ 558 (893)
......|..+ ..++|+.+++++|.+++..+..+..+++|+.|++++|.+.+.++ ..+
T Consensus 369 -~l~~~~f~~~---------------------~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 426 (680)
T 1ziw_A 369 -TLTNETFVSL---------------------AHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEW 426 (680)
T ss_dssp -EECTTTTGGG---------------------TTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGG
T ss_pred -HCCHHHHCCC---------------------CCCCCCEEECCCCCCCEECHHHHHCCCCCCEEECCCCCCCCCCCCCCC
T ss_conf -2353220245---------------------568676688999977767754420778888886778757543575532
Q ss_pred CCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCC--CCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 88999648986578667999978689998649985688201--1288410476533268702664567786012588666
Q 002679 559 GKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHII--GKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQL 636 (893)
Q Consensus 559 ~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~--~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 636 (893)
..+++|+.+++++|.+.+..+..+..+++|+.|++++|.+. +..|..+..+++|+.|++++|.+.+..+..|.++++|
T Consensus 427 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L 506 (680)
T 1ziw_A 427 RGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKL 506 (680)
T ss_dssp TTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCCCCCCEEECCCCCCCEECHHHHHCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHCCCCCC
T ss_conf 57546127844899754227645500754310110146442256677645557878999899998776794463455346
Q ss_pred CEECCCCCCCCCCCC--------CCCCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 541077774565532--------212488879844164685875650665403676511244333787400002587446
Q 002679 637 EYLDLSSNRLSNSIP--------RSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSL 708 (893)
Q Consensus 637 ~~L~Ls~n~l~~~~~--------~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 708 (893)
+.|++++|.+.+..+ ..+.++++|+.|++++|.+....+..|..+++|+.|+|++|.+++..+..|..+++|
T Consensus 507 ~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L 586 (680)
T 1ziw_A 507 EILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSL 586 (680)
T ss_dssp CEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CEEECCCCCCCCCCHHHCCCCCCHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCC
T ss_conf 88858899730000000467741423379988888899997887797773466675223899997776797683789888
Q ss_pred CEEECCCCCCCCCCCHHHH-CCCCCCEEECCCCCCCCCCCCCCCCCCCH
Q ss_conf 6121888868987721111-29999789732782300389992135320
Q 002679 709 EMLNLSHNNLSDFIPRCFE-EMNGLLYIDISYNELHGPIPNSTAFSDAL 756 (893)
Q Consensus 709 ~~L~Ls~N~l~~~~~~~l~-~l~~L~~l~ls~N~l~~~~~~~~~~~~~~ 756 (893)
+.|++++|++++..+..+. .++.|+.+++++|||.|+|+...+|..|.
T Consensus 587 ~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~~~~~~~~~ 635 (680)
T 1ziw_A 587 KSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWI 635 (680)
T ss_dssp CEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCCCSSEECCS
T ss_pred CEEECCCCCCCCCCHHHHCCCCCCCCEEECCCCCCCCCCCCHHHHHHHH
T ss_conf 8898999968705966830114665779831897025776689999998
No 4
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=504.51 Aligned_cols=659 Identities=21% Similarity=0.215 Sum_probs=327.1
Q ss_pred CCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC-CCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 9999979987899777569724459999989858898799889-822459999991017885579999787898999879
Q 002679 105 SFPHLAYLDLQVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTI-PPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEA 183 (893)
Q Consensus 105 ~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~-p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~ 183 (893)
-.+++++|+|++|.+.+..+..|.++++|++|++++|...+.+ |..|.++++|++|++++|.+.+..|..++++++|++
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 101 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFE 101 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCC
T ss_pred CCCCCCEEECCCCCCCCCCHHHCCCCCCCEEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCE
T ss_conf 99986888887786783296677662137088678997744419778537877888879899585319767157866587
Q ss_pred EECCCCCCCCCCCCC--CCCCCCCCEEECCCCCCCCCCC-CCCCCCCCCCEEECCCCCCCCCCCCCCCCC--CCCCEEEC
Q ss_conf 969886578989844--5799999899845887999899-898899998889910786888899244699--99979984
Q 002679 184 LHLFKNQLSGPIPHE--VGGLSSLNELALTSNFLKGSIP-PSLGNLTNLAILYLHNNSLSGSIPSEIGNL--KSLSSLAL 258 (893)
Q Consensus 184 L~l~~~~~~~~~~~~--~~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l--~~L~~L~l 258 (893)
|++++|.+.+..+.. +.++++|++|++++|.+.+..+ ..+.++++|+.|++++|.+.+..+..+..+ ++|+.|++
T Consensus 102 L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L 181 (844)
T 3j0a_A 102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSL 181 (844)
T ss_dssp EECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEE
T ss_pred EECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCEEECCCCCCCEECHHHCCCCCCCCCCEEEC
T ss_conf 01767889734046764556679998889878642325665576388989898989847766788753556775035789
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCC---CCCCEEECCCCCC
Q ss_conf 5887999898767899988799942677788787455588888752069874778778888889---9998798337887
Q 002679 259 GNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNL---TNLDTLYLYTNSL 335 (893)
Q Consensus 259 ~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l---~~L~~L~l~~n~~ 335 (893)
+.|.+.+..+..+..+.+ .+.. ..|+.|++++|.+.+..+..+... +.+..+.+..+..
T Consensus 182 ~~n~l~~~~~~~~~~~~~-----------------~~~~-~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~ 243 (844)
T 3j0a_A 182 AANSLYSRVSVDWGKCMN-----------------PFRN-MVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIM 243 (844)
T ss_dssp CCSBSCCCCCCCCCSSSC-----------------TTTT-CCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCC
T ss_pred CCCCCCCCCCCCHHHCCC-----------------CCCC-CCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCEECCCCCC
T ss_conf 788666554553322377-----------------2235-7400796578868656778887642744100112121223
Q ss_pred CCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC--CCCCCEECCCCCCCCCCCCC
Q ss_conf 5666898889999986974478678873445678765536861466677989865566--55574101688623565783
Q 002679 336 SGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGN--LKSLSNLDLSENKLSGSIPH 413 (893)
Q Consensus 336 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--l~~L~~L~L~~n~l~~~~~~ 413 (893)
... +..+.+.+.....+.+ .++|+.|++++|.+.+..+.
T Consensus 244 ------------------------~~~---------------~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~ 284 (844)
T 3j0a_A 244 ------------------------GAG---------------FGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSR 284 (844)
T ss_dssp ------------------------BCS---------------SSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSC
T ss_pred ------------------------CCC---------------CCCCCCCCCCHHHHHCCCCCCCCEEECCCCCCCCCCHH
T ss_conf ------------------------466---------------44456688985565255547861898979945515863
Q ss_pred CCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 34577755526522462545678111066664543478887677755567778755668744686733587223488988
Q 002679 414 SLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKL 493 (893)
Q Consensus 414 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L 493 (893)
.+..+++|+.|++++|.+.+..+..+.++++|+.|++++|.+.+..+..+..+++|+.+++++|.+....+..|..+++|
T Consensus 285 ~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L 364 (844)
T 3j0a_A 285 VFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKL 364 (844)
T ss_dssp CSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCC
T ss_pred HHHCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCC
T ss_conf 45258999999897981898796883688899989898997885187884689999989898998776286661378889
Q ss_pred CEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCC
Q ss_conf 78965898576788886899999889867884887788322489998699445870545588576889996489865786
Q 002679 494 TMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNN 573 (893)
Q Consensus 494 ~~L~Ls~n~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~ 573 (893)
+.|++++|.+.+ +..+++|+.+++++|.++..
T Consensus 365 ~~L~Ls~N~l~~----i~~~~~L~~L~l~~N~l~~l-------------------------------------------- 396 (844)
T 3j0a_A 365 QTLDLRDNALTT----IHFIPSIPDIFLSGNKLVTL-------------------------------------------- 396 (844)
T ss_dssp CEEEEETCCSCC----CSSCCSCSEEEEESCCCCCC--------------------------------------------
T ss_pred CEEECCCCCCCC----CCCCCCCCHHCCCCCCCCCC--------------------------------------------
T ss_conf 998898997786----16889823200589972314--------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCEEECCCCCCCCCC-CCCCCCCCCCEEEEECCCCCCCCCCC-CCCCCCCCCEECCCCCCCC----
Q ss_conf 67999978689998649985688201128-84104765332687026645677860-1258866654107777456----
Q 002679 574 IIGSLPPEIGDSSQLHVIDLSANHIIGKI-PSEIGKLSSLIKLILRRNQLFGQLPS-ELGSLIQLEYLDLSSNRLS---- 647 (893)
Q Consensus 574 ~~~~~~~~l~~~~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~---- 647 (893)
|.. ...++.+++++|++.+.. +..+..+++|+.|++++|.+.+..+. .+..+++|+.|++++|.+.
T Consensus 397 -----~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~ 468 (844)
T 3j0a_A 397 -----PKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWE 468 (844)
T ss_dssp -----CCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCC
T ss_pred -----CCC---CCCCCEEECCCCCCCCCCHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf -----554---554312214567534575566651277666666778712555543335668731002477773644101
Q ss_pred -CCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHH
Q ss_conf -5532212488879844164685875650665403676511244333787400002587446612188886898772111
Q 002679 648 -NSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCF 726 (893)
Q Consensus 648 -~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l 726 (893)
+..+..+.++++|+.|+|++|.+++.++..+..+++|+.|+|++|++++..+..+. ++|+.|++++|++++.+|..+
T Consensus 469 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~ 546 (844)
T 3j0a_A 469 TELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVF 546 (844)
T ss_dssp SCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCC
T ss_pred CCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCHHHHHEEECCCCCCCCCCHHHHH--CCCCEEECCCCCCCCCCHHHH
T ss_conf 355355544755365777889856553955704501221569999978745710110--045588898884788896683
Q ss_pred HCCCCCCEEECCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC---------------CEEEE
Q ss_conf 129999789732782300389992135320433137989988998988989988999887---------------40788
Q 002679 727 EEMNGLLYIDISYNELHGPIPNSTAFSDALMEALQGNEGLCGDIKGFQSCKASKSHKPAS---------------RKIWV 791 (893)
Q Consensus 727 ~~l~~L~~l~ls~N~l~~~~~~~~~~~~~~~~~~~gn~~lc~~~~~~~~C~~~~~~~~~~---------------~~~~~ 791 (893)
. .|..+++++||+.|+|+..+ |..|. ..++..+|+. +....|..+...++.. ....+
T Consensus 547 ~---~L~~l~l~~Np~~C~c~~~~-f~~~~---~~~~~~~~~~-~~~~~C~~p~~~~g~~l~~~~~~~C~~~~~~~~~~~ 618 (844)
T 3j0a_A 547 V---SLSVLDITHNKFICECELST-FINWL---NHTNVTIAGP-PADIYCVYPDSFSGVSLFSLSTEGCDEEEVLKSLKF 618 (844)
T ss_dssp S---SCCEEEEEEECCCCSSSCCS-HHHHH---HHTTTTTCCC-GGGCCCSSCSSSCSCCTTTCCCCCC----------C
T ss_pred C---CCCEEEECCCCCCCCCCCHH-HHHHH---HHCCCCCCCC-CCCCCCCCCHHHCCCCCCCCCCCCCCCHHHCCCCCE
T ss_conf 7---76889931997025366189-99999---7368530266-002755780665797200276122883110144200
Q ss_pred EEHHHHHHHHHHHHHHHH-HHHHH-----HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCHH
Q ss_conf 742789999999999999-99987-----640110101479999987743233567764888999995099955222101
Q 002679 792 VIVFPLLGTVALLISLIA-LFFIF-----RRRKNALQTLQSSPRGTRGFLSVLTFEGKIVYEEIIRQRMVLMMSTALEKV 865 (893)
Q Consensus 792 ~~~~~~~~~~~~~~~~~~-~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isy~el~~at~~f~~~~~l~~~ 865 (893)
.+++++++++++++++++ +++++ ++++..+.+..... .........|+++++|+..++.|+.....+.+|+.
T Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~--~~~~~~~~~yd~fisy~~~d~~~v~~~l~~~Le~~ 696 (844)
T 3j0a_A 619 SLFIVCTVTLTLFLMTILTVTKFRGFCFICYKTAQRLVFKDHP--QGTEPDMYKYDAYLCFSSKDFTWVQNALLKHLDTQ 696 (844)
T ss_dssp HHHHHHHHHHHHHHHTTTSHHHHC----------------CCC--GGGSSSCCCCSEEEECCSTTHHHHHHTHHHHHHST
T ss_pred EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--CCCCCCCEECCEEEEEECCCHHHHHHHHHHHHHHC
T ss_conf 0337999999999999999999862354466899999854655--43455642316799812786899999999987530
Q ss_pred ------------------HHHHHHHHHHHHHHHCC-----CCCCCC
Q ss_conf ------------------02322101357877202-----335110
Q 002679 866 ------------------DKEVYTKLIYLLEKSLQ-----SRNFIR 888 (893)
Q Consensus 866 ------------------~~~v~~~~~~~~~~~~~-----~~~f~~ 888 (893)
++++++++.++++++++ |++|++
T Consensus 697 ~~~~~~~~~~~~~rd~~~G~~~~~~i~~~i~~sr~~i~vls~~~~~ 742 (844)
T 3j0a_A 697 YSDQNRFNLCFEERDFVPGENRIANIQDAIWNSRKIVCLVSRHFLR 742 (844)
T ss_dssp TTTTTCSCEECSSSSCCSSSCHHHHHHHHHHHSSEEEEEECTTHHH
T ss_pred CCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCEEEEEECCCCCC
T ss_conf 2667755999874456787469999999999717488881445003
No 5
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=1.00 E-value=1 Score=491.39 Aligned_cols=586 Identities=23% Similarity=0.240 Sum_probs=385.7
Q ss_pred CCEEEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEC
Q ss_conf 98999986999984434876578999997998789977756972445999998985889879988982245999999101
Q 002679 82 GRVNSINLTNVGLKGTLHDFSFSSFPHLAYLDLQVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLY 161 (893)
Q Consensus 82 ~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~ 161 (893)
.+++.|+++++.+.+..+ ..|.++++|++|++++|.+.+..|..|+++++|++|++++|.+....+..|.++++|++|+
T Consensus 25 ~~l~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 103 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPA-ANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELH 103 (680)
T ss_dssp TTCSEEECCSSCCCCCCG-GGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred CCCCEEECCCCCCCCCCH-HHHHCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEE
T ss_conf 887688898997787597-8871787675887889964856977874066768888999856756854530388889898
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCC--CCCCCCEEECCCCCC
Q ss_conf 788557999978789899987996988657898984457999998998458879998998988--999988899107868
Q 002679 162 LSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLG--NLTNLAILYLHNNSL 239 (893)
Q Consensus 162 L~~n~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~--~l~~L~~L~l~~n~l 239 (893)
+++|.+.+..|..++++++|++|++++|.+.+..+..+.++++|++|++++|.+++..+..+. .+++|+.|++++|.+
T Consensus 104 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l 183 (680)
T 1ziw_A 104 LMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQI 183 (680)
T ss_dssp CCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCC
T ss_pred CCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCCCEEECCCCCC
T ss_conf 98996685396674156788889898995246672111245567779745884365297886244666321798889825
Q ss_pred CCCCCCCCCCCCCCCEEECCCCCCCCCCCCCC---CCCCCCCEEEEECCCCCCCCCCCCCCCCC--CCEEECCCCCCCCC
Q ss_conf 88899244699999799845887999898767---89998879994267778878745558888--87520698747787
Q 002679 240 SGSIPSEIGNLKSLSSLALGNNKLCGSIPLFL---GNLTNLDTLYLRNNSFSSSIPSEIGNLKS--LSILELGENRLNGS 314 (893)
Q Consensus 240 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l---~~l~~L~~L~L~~n~l~~~~~~~l~~l~~--L~~L~L~~n~l~~~ 314 (893)
.+..+..+..+++|+.+++.++.+.......+ ...++|+.|++++|.+.+..+..+..++. |+.|++++|.+.+.
T Consensus 184 ~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~ 263 (680)
T 1ziw_A 184 KEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVV 263 (680)
T ss_dssp CCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEE
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCCCCHHHHHCCCCCCCCEEECCCCCCCCC
T ss_conf 65581555322344554305664680567778777531510088745774364686675146767788877878876756
Q ss_pred CCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCC
Q ss_conf 78888889999879833788756668988899999869744786788734456787655368614666779898655665
Q 002679 315 IPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNL 394 (893)
Q Consensus 315 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 394 (893)
.+..+..+++|+.|++++|.+.+..+..+..+++|+.|+++++...+.++ +..++. .....+..+
T Consensus 264 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~--~~~lp~-------------i~~~~~~~l 328 (680)
T 1ziw_A 264 GNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSIS--LASLPK-------------IDDFSFQWL 328 (680)
T ss_dssp CTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC--------CCE-------------ECTTTTTTC
T ss_pred CCCCCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCHHHHCCCC--CCCCCC-------------CCHHHCCCC
T ss_conf 80211674105685577885676586562678885577363313213333--355454-------------386562467
Q ss_pred CCCCEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC--CCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 5574101688623565783345777555265224625456--78111066664543478887677755567778755668
Q 002679 395 KSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGS--IPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLL 472 (893)
Q Consensus 395 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~--~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 472 (893)
++|++|++++|.+.+..+..+..+++|+.|++++|.+... ....+..+ ..+.|+.+
T Consensus 329 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~----------------------~~~~L~~L 386 (680)
T 1ziw_A 329 KCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSL----------------------AHSPLHIL 386 (680)
T ss_dssp TTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGG----------------------TTSCCCEE
T ss_pred CCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCHHHHHCCHHHHCCC----------------------CCCCCCEE
T ss_conf 77888879898268788557406568728988798014432353220245----------------------56867668
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC--CCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCC
Q ss_conf 744686733587223488988789658985767888--868999998898678848877883224899986994458705
Q 002679 473 ALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIP--NLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNF 550 (893)
Q Consensus 473 ~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~~~~~~~--~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l 550 (893)
++++|.+.+..+..+..+++|+.|++++|.+.+.++ .+..+++|+++++++|.+....+..|..+++|+.|++++|.+
T Consensus 387 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l 466 (680)
T 1ziw_A 387 NLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVAL 466 (680)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCC
T ss_pred ECCCCCCCEECHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEECHHHHHCCCCCCCCHHCCCCC
T ss_conf 89999777677544207788888867787575435755325754612784489975422764550075431011014644
Q ss_pred C--CCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCC
Q ss_conf 4--55885768899964898657866799997868999864998568820112884104765332687026645677860
Q 002679 551 Y--GQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPS 628 (893)
Q Consensus 551 ~--~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~ 628 (893)
. +..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+. +....
T Consensus 467 ~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~----------------~~~~~ 530 (680)
T 1ziw_A 467 KNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANP----------------GGPIY 530 (680)
T ss_dssp BCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTST----------------TSCCC
T ss_pred CCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCC----------------CCCCH
T ss_conf 22566776455578789998999987767944634553468885889973000000046----------------77414
Q ss_pred CCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCC-CCCC
Q ss_conf 125886665410777745655322124888798441646858756506654036765112443337874000025-8744
Q 002679 629 ELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQIC-NMRS 707 (893)
Q Consensus 629 ~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~ 707 (893)
.+..+++|+.|++++|.+....+..|.++++|+.|++++|++++..+..|..+++|+.|+|++|.+++..+..+. .+++
T Consensus 531 ~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~ 610 (680)
T 1ziw_A 531 FLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRN 610 (680)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTT
T ss_pred HHCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCC
T ss_conf 23379988888899997887797773466675223899997776797683789888889899996870596683011466
Q ss_pred CCEEECCCCCCCCC
Q ss_conf 66121888868987
Q 002679 708 LEMLNLSHNNLSDF 721 (893)
Q Consensus 708 L~~L~Ls~N~l~~~ 721 (893)
|+.|++++|++...
T Consensus 611 L~~l~l~~N~~~c~ 624 (680)
T 1ziw_A 611 LTELDMRFNPFDCT 624 (680)
T ss_dssp CSEEECTTCCCCBC
T ss_pred CCEEECCCCCCCCC
T ss_conf 57798318970257
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=1.00 E-value=1 Score=449.08 Aligned_cols=528 Identities=20% Similarity=0.234 Sum_probs=287.6
Q ss_pred CCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCEEEC
Q ss_conf 99979987899777569724459999989858898799889822459999991017885579999787898999879969
Q 002679 107 PHLAYLDLQVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHL 186 (893)
Q Consensus 107 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l 186 (893)
+.+++|++++|.+.+..+..|+++++|++|++++|.+.+..|..|.++++|++|++++|.+.+..|..++++++|++|++
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 112 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF 112 (606)
T ss_dssp TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEEC
T ss_pred CCCCEEECCCCCCCCCCHHHHCCCCCCEEEECCCCCCCEECHHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEEC
T ss_conf 86758981587347179667256766528978898355248511368433676448898565458655234421537652
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCC--EEECCCCCCC
Q ss_conf 88657898984457999998998458879998998988999988899107868888992446999997--9984588799
Q 002679 187 FKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLS--SLALGNNKLC 264 (893)
Q Consensus 187 ~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~--~L~l~~n~~~ 264 (893)
++|.+.+..+..+.++++|++|++++|.+.+.....+..+++|++|++++|.+.+..+..+..+++|+ .+++++|.+.
T Consensus 113 ~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~ 192 (606)
T 3t6q_A 113 IQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA 192 (606)
T ss_dssp TTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCC
T ss_pred CCCCCCCCCCCHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHHHCCCCEEEEECCCCCCC
T ss_conf 12676657810122378223898879834114765456876568777656844554965633221564038966798147
Q ss_pred CCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCC
Q ss_conf 98987678999887999426777887874555888887520698747787788888899998798337887566689888
Q 002679 265 GSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIG 344 (893)
Q Consensus 265 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~ 344 (893)
+..|..+. ...|+.+++++|. ..+..+ ..+..+....+....+.
T Consensus 193 ~~~~~~~~-~~~L~~L~l~~~~---~~~~~~------------------------~~l~~~~l~~l~~~~~~-------- 236 (606)
T 3t6q_A 193 GIEPGAFD-SAVFQSLNFGGTQ---NLLVIF------------------------KGLKNSTIQSLWLGTFE-------- 236 (606)
T ss_dssp EECTTTTT-TCEEEEEECTTCS---CHHHHH------------------------HHTTTCEEEEEECCCCT--------
T ss_pred CCCHHHHH-HCCCCCCCCCCCH---HHHHHH------------------------HHCCCCCHHHEECHHHC--------
T ss_conf 54866730-0100135567726---677776------------------------51335644220020110--------
Q ss_pred CCCCCCEEECCCCCCCCCCCCCCCCCC--CCCEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 999998697447867887344567876--553686146667798986556655574101688623565783345777555
Q 002679 345 NLKSLSGLELADNELSSSIPHYLGNLT--NLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLA 422 (893)
Q Consensus 345 ~l~~L~~L~l~~n~l~~~~~~~~~~l~--~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 422 (893)
.+....+. +..+..+. +++.+++++|.+.+..+..+..+++|++|++++|.++ .+|..+..+++|+
T Consensus 237 ---~~~~~~i~--------~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~ 304 (606)
T 3t6q_A 237 ---DMDDEDIS--------PAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLK 304 (606)
T ss_dssp ---TSCCCCCC--------GGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCC
T ss_pred ---CCCCCCCC--------HHHHCHHHCCCEEEEEEECCCCCCCCHHHHCCCCCCCEEECCCCCCC-CCCHHHCCCCCCC
T ss_conf ---26412268--------66743032075059994457658557777445667888956288267-7782141654688
Q ss_pred EEECCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCC
Q ss_conf 26522462545678111066664543478887677755567778755668744686733587223488988789658985
Q 002679 423 ILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQ 502 (893)
Q Consensus 423 ~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~ 502 (893)
.|++++|. +.+..+..+..+++|++|++++|.
T Consensus 305 ~L~l~~n~------------------------------------------------l~~~~~~~~~~l~~L~~L~l~~n~ 336 (606)
T 3t6q_A 305 KLVLSANK------------------------------------------------FENLCQISASNFPSLTHLSIKGNT 336 (606)
T ss_dssp EEECTTCC------------------------------------------------CSBGGGGCGGGCTTCSEEECCSCS
T ss_pred EEECCCCC------------------------------------------------CCCCCHHHHHCCCCCCEEECCCCC
T ss_conf 89771687------------------------------------------------686760233015768988898997
Q ss_pred CCCCCC--CCCCCCCCCEEECCCCCCCCCC--CCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC
Q ss_conf 767888--8689999988986788488778--832248999869944587054558857688999648986578667999
Q 002679 503 LQGSIP--NLRNLTNLIRLRLNRNHLTCNI--SESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSL 578 (893)
Q Consensus 503 ~~~~~~--~l~~~~~L~~L~l~~n~l~~~~--~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 578 (893)
+.+..+ .+..+++|+++++++|.+.... +..+..+++|+.|++++|.+ .+..
T Consensus 337 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l------------------------~~~~ 392 (606)
T 3t6q_A 337 KRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEP------------------------LSLK 392 (606)
T ss_dssp SCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSC------------------------EEEC
T ss_pred CCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCHHCCCCCCCCEEECCCCCC------------------------CCCC
T ss_conf 4443462455066758988788996664567522105678889898989967------------------------7578
Q ss_pred CCCCCCCCCCCEEECCCCCCCCCCCC-CCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEECCCCCCCCCC---CCCCC
Q ss_conf 97868999864998568820112884-104765332687026645677860125886665410777745655---32212
Q 002679 579 PPEIGDSSQLHVIDLSANHIIGKIPS-EIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNS---IPRSL 654 (893)
Q Consensus 579 ~~~l~~~~~L~~L~l~~n~l~~~~~~-~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~---~~~~l 654 (893)
+..+..+++|+.|++++|.+.+..+. .+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+. .+..+
T Consensus 393 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 472 (606)
T 3t6q_A 393 TEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSL 472 (606)
T ss_dssp TTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGG
T ss_pred HHHHCCCCCCCEEECCCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCHHH
T ss_conf 88734774577687888867775652124176558889898985577687787378878889898998885434543124
Q ss_pred CCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCE
Q ss_conf 48887984416468587565066540367651124433378740000258744661218888689877211112999978
Q 002679 655 GNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLY 734 (893)
Q Consensus 655 ~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~ 734 (893)
..+++|+.|++++|.+.+..|..+..+++|+.|+|++|++++.+|..+..+++| .|++++|++++..|..+..++.|+.
T Consensus 473 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~ 551 (606)
T 3t6q_A 473 QTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRT 551 (606)
T ss_dssp GGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSE
T ss_pred CCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCC-EEECCCCCCCCCCHHHCCCCCCCCE
T ss_conf 048876688799996670686463265678889898980686896684756651-8987689414268766256778788
Q ss_pred EECCCCCCCCCCCCCCCCCCCH
Q ss_conf 9732782300389992135320
Q 002679 735 IDISYNELHGPIPNSTAFSDAL 756 (893)
Q Consensus 735 l~ls~N~l~~~~~~~~~~~~~~ 756 (893)
+++++||+.|.|+..+ |..|.
T Consensus 552 L~l~~N~~~c~c~~~~-~~~w~ 572 (606)
T 3t6q_A 552 INLRQNPLDCTCSNIY-FLEWY 572 (606)
T ss_dssp EECTTCCEECSGGGHH-HHHHH
T ss_pred EECCCCCCCCCCCCHH-HHHHH
T ss_conf 9677998616677578-99999
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=1.00 E-value=1 Score=440.79 Aligned_cols=540 Identities=21% Similarity=0.224 Sum_probs=291.8
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEECCCCCC
Q ss_conf 98699998443487657899999799878997775697244599999898588987998898224599999910178855
Q 002679 87 INLTNVGLKGTLHDFSFSSFPHLAYLDLQVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQ 166 (893)
Q Consensus 87 l~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~ 166 (893)
++.++.++. .+| ..+ .+++++|++++|.+.+..+..|.++++|++|++++|.+.+..|..|.++++|++|++++|.
T Consensus 16 ~~c~~~~l~-~ip-~~~--~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~ 91 (606)
T 3vq2_A 16 YQCMDQKLS-KVP-DDI--PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP 91 (606)
T ss_dssp EECTTSCCS-SCC-TTS--CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred EECCCCCCC-CCC-CCC--CCCCCEEECCCCCCCEECHHHCCCCCCCCEEECCCCCCCCCCHHHHHCHHHCCEEECCCCC
T ss_conf 574688845-189-888--8876788788897577375455577667488688773664397773060106886787985
Q ss_pred CCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC-CCCCCCCCCCCCCEEECCCCCCCCCCCC
Q ss_conf 799997878989998799698865789898445799999899845887999-8998988999988899107868888992
Q 002679 167 FSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKG-SIPPSLGNLTNLAILYLHNNSLSGSIPS 245 (893)
Q Consensus 167 ~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~ 245 (893)
+.+..|..++++++|++|++++|.+.+..+..+.++++|++|++++|.+.+ .+|..+..+++|++|++++|.+++..+.
T Consensus 92 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~ 171 (606)
T 3vq2_A 92 IQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVN 171 (606)
T ss_dssp CCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTT
T ss_pred CCCCCHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCEECHHHHHHCCCCCEEECCCCCCEECCHH
T ss_conf 63048522078653788870377555445113489887798968788523253068673267777887668853105733
Q ss_pred CCCCCCCC----CEEECCCCCCCCCCCCCCCCCCCCCEEEEECCCCC-CCCCCCCCCCCCCCEEECCCCCCCCCCCCCCC
Q ss_conf 44699999----79984588799989876789998879994267778-87874555888887520698747787788888
Q 002679 246 EIGNLKSL----SSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFS-SSIPSEIGNLKSLSILELGENRLNGSIPLSLG 320 (893)
Q Consensus 246 ~l~~l~~L----~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~ 320 (893)
.+..+++| ..+++++|.+.+..+..+.. .+|+.|++++|.+. +..+..+.+++.++.+++..+.+..
T Consensus 172 ~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~-~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~------- 243 (606)
T 3vq2_A 172 DLQFLRENPQVNLSLDMSLNPIDFIQDQAFQG-IKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKD------- 243 (606)
T ss_dssp TTHHHHHCTTCCCEEECTTCCCCEECTTTTTT-CEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTT-------
T ss_pred HHHHHHCCCCCCCEEECCCCCCCEECCCCCCC-CEEEEEECCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCC-------
T ss_conf 41212034200243004689753257110567-6043352467856166778886026656523141111036-------
Q ss_pred CCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 89999879833788756668988899999869744786788734456787655368614666779898655665557410
Q 002679 321 NLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNL 400 (893)
Q Consensus 321 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 400 (893)
. ..+.. ..+..+..+. .+ .++.+
T Consensus 244 -----------------~--------~~l~~----------~~~~~~~~l~---------------------~l-~l~~l 266 (606)
T 3vq2_A 244 -----------------E--------RNLEI----------FEPSIMEGLC---------------------DV-TIDEF 266 (606)
T ss_dssp -----------------S--------CCCSC----------CCGGGGTTGG---------------------GS-EEEEE
T ss_pred -----------------C--------CCCCC----------CCHHHHHHHH---------------------HC-CHHHE
T ss_conf -----------------7--------74102----------6817766665---------------------43-47450
Q ss_pred CC-CCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCC
Q ss_conf 16-88623565783345777555265224625456781110666645434788876777555677787556687446867
Q 002679 401 DL-SENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNAL 479 (893)
Q Consensus 401 ~L-~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 479 (893)
++ ..+.+.+..+. +..+++|+.++++++.+.. ++ .+..+++|+.+++++|.+
T Consensus 267 ~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~-l~-------------------------~l~~~~~L~~L~l~~n~l 319 (606)
T 3vq2_A 267 RLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKY-LE-------------------------DVPKHFKWQSLSIIRCQL 319 (606)
T ss_dssp EECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCC-CC-------------------------CCCTTCCCSEEEEESCCC
T ss_pred ECCCCCCCCCCCCC-CCCCCCCCEEEECCCCCHH-HH-------------------------HCCCCCCCCEEECCCCCC
T ss_conf 12366555543222-3548878987714766044-35-------------------------433401177897646667
Q ss_pred CCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCC
Q ss_conf 33587223488988789658985767888868999998898678848877883224899986994458705455885768
Q 002679 480 SGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWG 559 (893)
Q Consensus 480 ~~~~~~~~~~~~~L~~L~Ls~n~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 559 (893)
+.+| .+ .+++|+.|++++|...+.. .+..+++|+++++++|.+++.. ..+..+.
T Consensus 320 -~~lp-~~-~l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~ls~n~l~~~~----------------------~~~~~~~ 373 (606)
T 3vq2_A 320 -KQFP-TL-DLPFLKSLTLTMNKGSISF-KKVALPSLSYLDLSRNALSFSG----------------------CCSYSDL 373 (606)
T ss_dssp -SSCC-CC-CCSSCCEEEEESCSSCEEC-CCCCCTTCCEEECCSSCEEEEE----------------------ECCHHHH
T ss_pred -CCCC-CC-CCCCCCEEECCCCCCCCCH-HHCCCCCCCEEECCCCCCCCCC----------------------CHHHHHC
T ss_conf -6546-67-8875564454478685310-0024898887977587368775----------------------2012214
Q ss_pred CCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC-CCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCE
Q ss_conf 89996489865786679999786899986499856882011288-41047653326870266456778601258866654
Q 002679 560 KCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIP-SEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEY 638 (893)
Q Consensus 560 ~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 638 (893)
.+++|+.+++++|.+.+ +|..+..+++|+.|++++|.+.+..+ ..+..+++|+.|++++|.+.+..+..+..+++|+.
T Consensus 374 ~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 452 (606)
T 3vq2_A 374 GTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNT 452 (606)
T ss_dssp CCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCE
T ss_pred CCCCCCEEECCCCCCCC-CHHHCCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHCCCCCCCE
T ss_conf 67755486788995300-05540688888965898870587537645646213788989689787433555347787898
Q ss_pred ECCCCCCCCC-CCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCC
Q ss_conf 1077774565-532212488879844164685875650665403676511244333787400002587446612188886
Q 002679 639 LDLSSNRLSN-SIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNN 717 (893)
Q Consensus 639 L~Ls~n~l~~-~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 717 (893)
|++++|.+.+ ..|..+..+++|+.|++++|.+++.+|..+..+++|+.|++++|++++.+|..+..+++|+.|++++|+
T Consensus 453 L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~ 532 (606)
T 3vq2_A 453 LKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR 532 (606)
T ss_dssp EECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSC
T ss_pred EECCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCEEECCCCC
T ss_conf 98989837985467760457889989898885776486561546468989898995787487770688768988898983
Q ss_pred CCCCCCHHHHCCC-CCCEEECCCCCCCCCCCCCC
Q ss_conf 8987721111299-99789732782300389992
Q 002679 718 LSDFIPRCFEEMN-GLLYIDISYNELHGPIPNST 750 (893)
Q Consensus 718 l~~~~~~~l~~l~-~L~~l~ls~N~l~~~~~~~~ 750 (893)
++. +|..+..++ .|+.+++++||+.|.|+..+
T Consensus 533 l~~-~p~~~~~l~~~L~~l~l~~N~~~c~c~~~~ 565 (606)
T 3vq2_A 533 IET-SKGILQHFPKSLAFFNLTNNSVACICEHQK 565 (606)
T ss_dssp CCC-EESCGGGSCTTCCEEECCSCCCCCSSTTHH
T ss_pred CCC-CCHHHHHHCCCCCEEECCCCCCCCCCCCHH
T ss_conf 766-687675210217488762898664776489
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=1.00 E-value=1 Score=437.22 Aligned_cols=520 Identities=21% Similarity=0.232 Sum_probs=276.9
Q ss_pred CCEEEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEC
Q ss_conf 98999986999984434876578999997998789977756972445999998985889879988982245999999101
Q 002679 82 GRVNSINLTNVGLKGTLHDFSFSSFPHLAYLDLQVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLY 161 (893)
Q Consensus 82 ~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~ 161 (893)
..++.|+++++.+.+..+ ..|.++++|++|++++|.+.+..|.+|+++++|++|++++|.+.+..|..|+++++|++|+
T Consensus 33 ~~l~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 111 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQN-TTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLF 111 (606)
T ss_dssp TTCCEEECTTCCCSEECT-TTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEE
T ss_pred CCCCEEECCCCCCCCCCH-HHHCCCCCCEEEECCCCCCCEECHHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEE
T ss_conf 867589815873471796-6725676652897889835524851136843367644889856545865523442153765
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCC--EEECCCCCC
Q ss_conf 788557999978789899987996988657898984457999998998458879998998988999988--899107868
Q 002679 162 LSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLA--ILYLHNNSL 239 (893)
Q Consensus 162 L~~n~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~--~L~l~~n~l 239 (893)
+++|.+.+..|..++++++|++|++++|.+.+.....+..+++|++|++++|.+++..+..+..+++|+ .|++++|.+
T Consensus 112 L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l 191 (606)
T 3t6q_A 112 FIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDI 191 (606)
T ss_dssp CTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCC
T ss_pred CCCCCCCCCCCCHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHHHCCCCEEEEECCCCCC
T ss_conf 21267665781012237822389887983411476545687656877765684455496563322156403896679814
Q ss_pred CCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCC
Q ss_conf 88899244699999799845887999898767899988799942677788787455588888752069874778778888
Q 002679 240 SGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSL 319 (893)
Q Consensus 240 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~ 319 (893)
.+..+..+.. ..|+.++++++. ..+..+..+..+....+....+.. +....+....+. .+
T Consensus 192 ~~~~~~~~~~-~~L~~L~l~~~~---~~~~~~~~l~~~~l~~l~~~~~~~-----------~~~~~i~~~~~~-----~l 251 (606)
T 3t6q_A 192 AGIEPGAFDS-AVFQSLNFGGTQ---NLLVIFKGLKNSTIQSLWLGTFED-----------MDDEDISPAVFE-----GL 251 (606)
T ss_dssp CEECTTTTTT-CEEEEEECTTCS---CHHHHHHHTTTCEEEEEECCCCTT-----------SCCCCCCGGGGG-----GG
T ss_pred CCCCHHHHHH-CCCCCCCCCCCH---HHHHHHHHCCCCCHHHEECHHHCC-----------CCCCCCCHHHHC-----HH
T ss_conf 7548667300-100135567726---677776513356442200201102-----------641226866743-----03
Q ss_pred CCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 88999987983378875666898889999986974478678873445678765536861466677989865566555741
Q 002679 320 GNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSN 399 (893)
Q Consensus 320 ~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 399 (893)
.. ..|+.+++++|.+.+..+..+..+++|+.|++++|.++ .+|..+.. +++|++
T Consensus 252 ~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~------------------------l~~L~~ 305 (606)
T 3t6q_A 252 CE-MSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVG------------------------LSTLKK 305 (606)
T ss_dssp GG-SEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCS------------------------CTTCCE
T ss_pred HC-CCEEEEEEECCCCCCCCHHHHCCCCCCCEEECCCCCCC-CCCHHHCC------------------------CCCCCE
T ss_conf 20-75059994457658557777445667888956288267-77821416------------------------546888
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC-HHHHCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCEEECCC
Q ss_conf 0168862356578334577755526522462545678-11106666454347888767775--55677787556687446
Q 002679 400 LDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIP-REIGNLKSLFELQLGDNKLSNSI--SHSLGNLTHMTLLALYD 476 (893)
Q Consensus 400 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~~~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~ 476 (893)
|++++|.+.+..+..+..+++|+.|++++|.+.+.++ ..+..+++|+.|++++|.+.+.. +..+..+++|+.+++++
T Consensus 306 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~ 385 (606)
T 3t6q_A 306 LVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSY 385 (606)
T ss_dssp EECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCS
T ss_pred EECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCHHCCCCCCCCEEECCC
T ss_conf 97716876867602330157689888989974443462455066758988788996664567522105678889898989
Q ss_pred CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCC
Q ss_conf 86733587223488988789658985767888868999998898678848877883224899986994458705455885
Q 002679 477 NALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISS 556 (893)
Q Consensus 477 n~l~~~~~~~~~~~~~L~~L~Ls~n~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 556 (893)
|.+.+..+..+..++ +|+.|++++|.+.+..+.
T Consensus 386 n~l~~~~~~~~~~l~-----------------------------------------------~L~~L~l~~n~l~~~~~~ 418 (606)
T 3t6q_A 386 NEPLSLKTEAFKECP-----------------------------------------------QLELLDLAFTRLKVKDAQ 418 (606)
T ss_dssp CSCEEECTTTTTTCT-----------------------------------------------TCSEEECTTCCEECCTTC
T ss_pred CCCCCCCHHHHCCCC-----------------------------------------------CCCEEECCCCCCCCCCCC
T ss_conf 967757888734774-----------------------------------------------577687888867775652
Q ss_pred -CCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC---CCCCCCCCCCCEEEEECCCCCCCCCCCCCCC
Q ss_conf -768899964898657866799997868999864998568820112---8841047653326870266456778601258
Q 002679 557 -DWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGK---IPSEIGKLSSLIKLILRRNQLFGQLPSELGS 632 (893)
Q Consensus 557 -~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~---~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~ 632 (893)
.+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+. .+..+. .
T Consensus 419 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~------------------------~ 474 (606)
T 3t6q_A 419 SPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQ------------------------T 474 (606)
T ss_dssp CTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGG------------------------G
T ss_pred HHHHCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCHHHC------------------------C
T ss_conf 1241765588898989855776877873788788898989988854345431240------------------------4
Q ss_pred CCCCCEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 86665410777745655322124888798441646858756506654036765112443337874000025874466121
Q 002679 633 LIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLN 712 (893)
Q Consensus 633 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 712 (893)
+++|+.|++++|.+.+..|..+..+++|+.|++++|++++.+|..+..++.| .|++++|.+++.+|..+..+++|+.|+
T Consensus 475 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~ 553 (606)
T 3t6q_A 475 LGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTIN 553 (606)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEE
T ss_pred CCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCC-EEECCCCCCCCCCHHHCCCCCCCCEEE
T ss_conf 8876688799996670686463265678889898980686896684756651-898768941426876625677878896
Q ss_pred CCCCCCCC
Q ss_conf 88886898
Q 002679 713 LSHNNLSD 720 (893)
Q Consensus 713 Ls~N~l~~ 720 (893)
+++|++..
T Consensus 554 l~~N~~~c 561 (606)
T 3t6q_A 554 LRQNPLDC 561 (606)
T ss_dssp CTTCCEEC
T ss_pred CCCCCCCC
T ss_conf 77998616
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=436.47 Aligned_cols=530 Identities=22% Similarity=0.196 Sum_probs=314.3
Q ss_pred CCCCCEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC-CCCCCCCCCCCCEEECCCCCCCCCCCC
Q ss_conf 8447145289998999986999984434876578999997998789977756-972445999998985889879988982
Q 002679 71 CAWFGIHCNHVGRVNSINLTNVGLKGTLHDFSFSSFPHLAYLDLQVNQIFGI-IPPQIGNISKLKYLDLSSNSFSGTIPP 149 (893)
Q Consensus 71 c~w~gv~c~~~~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~-~~~~~~~l~~L~~L~Ls~n~~~~~~p~ 149 (893)
|.|..|.+ -...++.|+++++.+.+..+ ..|..+++|++|+|++|..... .|.+|.++++|++|+|++|.+.+..|.
T Consensus 14 ~~L~~vP~-lp~~l~~LdLs~N~i~~i~~-~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~ 91 (844)
T 3j0a_A 14 CNLTQVPQ-VLNTTERLLLSFNYIRTVTA-SSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPD 91 (844)
T ss_dssp CCSSCCCS-SCTTCCEEEEESCCCCEECS-SSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTT
T ss_pred CCCCCCCC-CCCCCCEEECCCCCCCCCCH-HHCCCCCCCEEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHH
T ss_conf 99777898-99986888887786783296-67766213708867899774441977853787788887989958531976
Q ss_pred CCCCCCCCCEECCCCCCCCCCCCCC--CCCCCCCCEEECCCCCCCCCCC-CCCCCCCCCCEEECCCCCCCCCCCCCCCCC
Q ss_conf 2459999991017885579999787--8989998799698865789898-445799999899845887999899898899
Q 002679 150 QIGNLSMLKFLYLSANQFSGRIPPQ--IGHLSYIEALHLFKNQLSGPIP-HEVGGLSSLNELALTSNFLKGSIPPSLGNL 226 (893)
Q Consensus 150 ~l~~l~~L~~L~L~~n~~~~~~p~~--l~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l 226 (893)
.|.++++|++|++++|.+.+.+|.. ++++++|++|++++|.+.+..+ ..|.++++|++|++++|.+.+..+..+..+
T Consensus 92 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l 171 (844)
T 3j0a_A 92 AFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPL 171 (844)
T ss_dssp SSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHH
T ss_pred HCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCEEECCCCCCCEECHHHCCCC
T ss_conf 71578665870176788973404676455667999888987864232566557638898989898984776678875355
Q ss_pred --CCCCEEECCCCCCCCCCCCCCCCCCC------CCEEECCCCCCCCCCCCCCCC---CCCCCEEEEECCCCCCCCCCCC
Q ss_conf --99888991078688889924469999------979984588799989876789---9988799942677788787455
Q 002679 227 --TNLAILYLHNNSLSGSIPSEIGNLKS------LSSLALGNNKLCGSIPLFLGN---LTNLDTLYLRNNSFSSSIPSEI 295 (893)
Q Consensus 227 --~~L~~L~l~~n~l~~~~~~~l~~l~~------L~~L~l~~n~~~~~~~~~l~~---l~~L~~L~L~~n~l~~~~~~~l 295 (893)
++|+.|++++|.+.+..+..+..+.. |+.|++++|.+.+..+..+.. ..+++.+.++.+.....
T Consensus 172 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~----- 246 (844)
T 3j0a_A 172 QGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAG----- 246 (844)
T ss_dssp HHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCS-----
T ss_pred CCCCCCEEECCCCCCCCCCCCCHHHCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCEECCCCCCCCC-----
T ss_conf 677503578978866655455332237722357400796578868656778887642744100112121223466-----
Q ss_pred CCCCCCCEEECCCCCCCCCCCCCCCCC--CCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 588888752069874778778888889--999879833788756668988899999869744786788734456787655
Q 002679 296 GNLKSLSILELGENRLNGSIPLSLGNL--TNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNL 373 (893)
Q Consensus 296 ~~l~~L~~L~L~~n~l~~~~~~~~~~l--~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 373 (893)
...+.+.......+..+ ++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|
T Consensus 247 ----------~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L 316 (844)
T 3j0a_A 247 ----------FGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNL 316 (844)
T ss_dssp ----------SSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSC
T ss_pred ----------CCCCCCCCCCHHHHHCCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHCCCCCC
T ss_conf ----------4445668898556525554786189897994551586345258999999897981898796883688899
Q ss_pred CEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCCCCCCC
Q ss_conf 36861466677989865566555741016886235657833457775552652246254567811106666454347888
Q 002679 374 AAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDN 453 (893)
Q Consensus 374 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n 453 (893)
+.|++++|.+.+..+..+..+++|+.|++++|.+....+..|..+++|+.|++++|.+.+.
T Consensus 317 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i------------------- 377 (844)
T 3j0a_A 317 QVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI------------------- 377 (844)
T ss_dssp CEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-------------------
T ss_pred CEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCC-------------------
T ss_conf 9898989978851878846899999898989987762866613788899988989977861-------------------
Q ss_pred CCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCC-
Q ss_conf 7677755567778755668744686733587223488988789658985767888868999998898678848877883-
Q 002679 454 KLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNISE- 532 (893)
Q Consensus 454 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~- 532 (893)
..+++|+.+++++|.+... +. ...+++.+++++|.+......
T Consensus 378 ----------~~~~~L~~L~l~~N~l~~l-~~--------------------------~~~~l~~L~ls~N~l~~l~~~~ 420 (844)
T 3j0a_A 378 ----------HFIPSIPDIFLSGNKLVTL-PK--------------------------INLTANLIHLSENRLENLDILY 420 (844)
T ss_dssp ----------SSCCSCSEEEEESCCCCCC-CC--------------------------CCTTCCEEECCSCCCCSSTTHH
T ss_pred ----------CCCCCCCHHCCCCCCCCCC-CC--------------------------CCCCCCEEECCCCCCCCCCHHH
T ss_conf ----------6889823200589972314-55--------------------------4554312214567534575566
Q ss_pred CCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 22489998699445870545588576889996489865786679999786899986499856882011288410476533
Q 002679 533 SFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSL 612 (893)
Q Consensus 533 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L 612 (893)
.+..+++|+.|++++|.+++..+. ..+..+++|+.|++++|.+....+.
T Consensus 421 ~~~~l~~L~~L~Ls~N~l~~~~~~-----------------------~~~~~~~~L~~L~Ls~N~l~~~~~~-------- 469 (844)
T 3j0a_A 421 FLLRVPHLQILILNQNRFSSCSGD-----------------------QTPSENPSLEQLFLGENMLQLAWET-------- 469 (844)
T ss_dssp HHTTCTTCCEEEEESCCCCCCCSS-----------------------SSSCSCTTCCBCEEESCCCSSSCCS--------
T ss_pred HHHCCCCCCEEECCCCCCCCCCCC-----------------------CCCCCCCCCCCCCCCCCCCCCCCCC--------
T ss_conf 651277666666778712555543-----------------------3356687310024777736441013--------
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCCCCCCC
Q ss_conf 26870266456778601258866654107777456553221248887984416468587565066540367651124433
Q 002679 613 IKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHN 692 (893)
Q Consensus 613 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N 692 (893)
+..+..|..+++|+.|+|++|.+++..+..+..+++|+.|+|++|++++.++..+. ++|+.|+|++|
T Consensus 470 -----------~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N 536 (844)
T 3j0a_A 470 -----------ELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRN 536 (844)
T ss_dssp -----------CCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEE
T ss_pred -----------CCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCHHHHHEEECCCCCCCCCCHHHHH--CCCCEEECCCC
T ss_conf -----------55355544755365777889856553955704501221569999978745710110--04558889888
Q ss_pred CCCCCCCCCCCCCCCCCEEECCCCCCCC
Q ss_conf 3787400002587446612188886898
Q 002679 693 FLGKEIPSQICNMRSLEMLNLSHNNLSD 720 (893)
Q Consensus 693 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 720 (893)
.+++.+|..+ ++|+.|++++|++..
T Consensus 537 ~l~~~~~~~~---~~L~~l~l~~Np~~C 561 (844)
T 3j0a_A 537 QLLAPNPDVF---VSLSVLDITHNKFIC 561 (844)
T ss_dssp CCCCCCSCCC---SSCCEEEEEEECCCC
T ss_pred CCCCCCHHHH---CCCCEEEECCCCCCC
T ss_conf 4788896683---776889931997025
No 10
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=1.00 E-value=1 Score=426.14 Aligned_cols=81 Identities=21% Similarity=0.294 Sum_probs=67.1
Q ss_pred CCHHHHHHHHHHHHHCCCCCCCC-------CCCCCCCCCCCCCCCCCC---CCEEECCCCCEEEEECCCCCCCCCCCCCC
Q ss_conf 98888999999986079999999-------999998899999999844---71452899989999869999844348765
Q 002679 33 DSTEEVHALLKWKTSLQNHDKGS-------LLPSWTLNNATKISPCAW---FGIHCNHVGRVNSINLTNVGLKGTLHDFS 102 (893)
Q Consensus 33 ~~~~~~~~l~~~~~~~~~~~~~~-------~~~~W~~~~~~~~~~c~w---~gv~c~~~~~v~~l~l~~~~~~~~~~~~~ 102 (893)
....|+.||.+++.++..+. +. ...+|+ .+.+||.| .||+|+..++|++|+++++++.|.++ .+
T Consensus 27 ~~~~d~~aL~~~~~~~~~~~-w~~~~~~~~~~~~W~----~~~~~c~w~~~~GV~C~~~~~V~~L~L~~~~l~g~lp-~~ 100 (636)
T 4eco_A 27 EYIKDYLALKEIWDALNGKN-WSQQGFGTQPGANWN----FNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVP-DA 100 (636)
T ss_dssp HHHHHHHHHHHHHHHTTGGG-CCCCC------CCCC----CSSCGGGTTCCTTEEECTTCCEEEEECTTSCCEEEEC-GG
T ss_pred HHHHHHHHHHHHHHHCCCCC-CCCCCCCCCCCCCCC----CCCCCCCCCCCCCEEECCCCCEEEEEECCCCCCCCCC-HH
T ss_conf 67788999999999758997-454776776578877----7998000147798487678978899842766577288-57
Q ss_pred CCCCCCCCEEECCCCCC
Q ss_conf 78999997998789977
Q 002679 103 FSSFPHLAYLDLQVNQI 119 (893)
Q Consensus 103 ~~~l~~L~~L~L~~n~~ 119 (893)
+.++++|++|+|++|.+
T Consensus 101 l~~L~~L~~L~Ls~N~~ 117 (636)
T 4eco_A 101 IGQLTELEVLALGSHGE 117 (636)
T ss_dssp GGGCTTCCEEESCCGGG
T ss_pred HHCCCCCEEEECCCCCC
T ss_conf 85684511898768851
Done!