Query 002680
Match_columns 893
No_of_seqs 351 out of 1366
Neff 4.4
Searched_HMMs 29240
Date Tue Mar 26 17:25:14 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002680.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1398-1402//hhsearch_pdb/002680hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jy1_A TDP1, tyrosyl-DNA phosp 1.0 1 1 521.9 9.3 335 399-801 5-361 (464)
2 1q32_A TDP1P;, tyrosyl-DNA pho 1.0 1 1 475.1 5.8 334 388-797 57-440 (544)
3 3sq7_A Tyrosyl-DNA phosphodies 1.0 1 1 442.7 4.3 314 413-798 2-364 (470)
4 4h87_A Kanadaptin; FHA domain 1.0 1 1 135.9 11.7 100 46-174 20-119 (130)
5 3elv_A PRE-mRNA leakage protei 1.0 1 1 130.7 9.1 98 46-176 78-191 (205)
6 3els_A PRE-mRNA leakage protei 1.0 1 1 126.2 10.1 97 47-176 32-144 (158)
7 1qu5_A Protein kinase SPK1; FH 1.0 1 1 123.4 6.8 94 62-179 43-137 (182)
8 2jpe_A Nuclear inhibitor of pr 1.0 1 1 123.0 2.7 91 47-175 35-126 (140)
9 1dmz_A Protein (protein kinase 1.0 1 1 119.5 9.1 95 61-179 18-113 (158)
10 1uht_A Expressed protein; FHA 1.0 1 1 117.7 8.4 89 45-174 11-101 (118)
No 1
>1jy1_A TDP1, tyrosyl-DNA phosphodiesterase; PLD superfamily, hydrolase; 1.69A {Homo sapiens} SCOP: d.136.1.3 d.136.1.3 PDB: 1rff_A* 1mu9_A 1nop_A 1mu7_A* 1rfi_A* 1rg1_A* 1rg2_A* 1rgt_A* 1rgu_A* 1rh0_A* 1qzq_A
Probab=1.00 E-value=1 Score=521.93 Aligned_cols=335 Identities=17% Similarity=0.296 Sum_probs=266.4
Q ss_pred CCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCC-CHHHHHHHHHHCCCCHHHHHHHCC-CCCCCCEEEE
Q ss_conf 77766688989999986799881557887999986233412588-412769898630126666632059-9999759999
Q 002680 399 MDKSKSLGSSCSPPGKKFYLNRLEFMDLTSLNYDVISLPELLYP-VESISRMFIATFTSDILWFMSYCE-IPSHLPVTIA 476 (893)
Q Consensus 399 ~~~~~~~~~~~~~~gspF~LtrI~~lp~~~~n~~tISL~DLLgP-~~~L~~ailsnF~iDidWLLs~f~-~~r~lpVtIV 476 (893)
.+..++|...|...+.+||||+|++++..+ |.++|+|+|||++ .++|++||+||||+|++|||++|+ ..+++||+||
T Consensus 5 ~~~~~~~~~~~~~~p~~~~l~~i~~~~~~~-n~~~itl~diL~~~~g~l~~a~~~nf~~D~~WLl~~~~~~~~~~~v~iv 83 (464)
T 1jy1_A 5 GEGQDIWDMLDKGNPFQFYLTRVSGVKPKY-NSGALHIKDILSPLFGTLVSSAQFNYCFDVDWLVKQYPPEFRKKPILLV 83 (464)
T ss_dssp TTTCCGGGTSCTTCSSCEEEBCCTTSCGGG-GTTCBCHHHHTSGGGCCEEEEEEECSCBCHHHHHHHSCGGGTTSCEEEE
T ss_pred CCCCCHHHHHCCCCCCEEEEEEECCCCCCC-CCCCEEHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEE
T ss_conf 445344554123688417987624888655-8895339997388621379988678677098998637610158757999
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCEEEEEECCCCCHHHHCC
Q ss_conf 80576544468677677788999991999589986412366555788542114099998479279999289999774313
Q 002680 477 CHNTERCWSTSADKRTSVPYPNFPNLVLVFPPFPESVAFGENCKKQGIACHHPKLFVLQREDSIRVIVTSANLGAKQWNA 556 (893)
Q Consensus 477 vh~~~g~wk~e~~~rl~~~~~~~pNv~lv~PpLPe~IaFG~d~~~~g~GtHHSKLmIL~y~D~LRVVI~TANLi~~DW~~ 556 (893)
.+...+. ..++..++..++|+++|+|+|| ++|| |||||||||+|+|++|||||||||++.||++
T Consensus 84 ~g~~~~~-----~~~l~~~~~~~~nv~~~~p~mp--~~fG---------thHsKmmiL~y~~glRVVI~TANL~~~DW~~ 147 (464)
T 1jy1_A 84 HGDKREA-----KAHLHAQAKPYENISLCQAKLD--IAFG---------THHTKMMLLLYEEGLRVVIHTSNLIHADWHQ 147 (464)
T ss_dssp ECCCHHH-----HHHHHHHHTTCTTEEEEECCCC--STTC---------CBCCCEEEEEESSCEEEEEECCCBSGGGGTS
T ss_pred ECCCCCC-----CHHHHHHHCCCCCEEEEECCCC--CCCC---------CCCHHHHEEECCCCEEEEEECCCCCHHHHCC
T ss_conf 6798663-----0556776324787389927898--7546---------6232201233479529999689888668455
Q ss_pred CCCEEEEEC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCEEEEEEC
Q ss_conf 458699652-7788899966645579832236889784799999999981249984369997512534665418999704
Q 002680 557 VTNTVWWQD-FPRRCAPDYLSLFVQTPVEEINQDSRSDFTAQLASFMASLVIDVPSQAHWIVELTKYDFASAAGHLVASV 635 (893)
Q Consensus 557 ~TQ~VWiQD-FPrl~~~~~~~~~~~~~~~e~~~~s~sdFk~dL~~YL~sy~~~~ps~~~li~~L~kyDFSsakv~LVaSV 635 (893)
+||++|+|| ||+++.... ...+++++|+.||++||++|+. +.+..|++.|++||||+++|+||+||
T Consensus 148 ~tQ~vW~sd~lP~~~~~~~-----------~~~~~~~~Fk~dL~~yL~ay~~--~~~~~~i~~L~~~DFS~~~v~LVaSv 214 (464)
T 1jy1_A 148 KTQGIWLSPLYPRIADGTH-----------KSGESPTHFKANLISYLTAYNA--PSLKEWIDVIHKHDLSETNVYLIGST 214 (464)
T ss_dssp SBCEEEECCCBCBCCTTCC-----------CCCCCTTCHHHHHHHHHHTTCC--GGGHHHHHHHHTBCCTTCCSEEEEEC
T ss_pred CCCEEEECCCCCCCCCCCC-----------CCCCCCCCHHHHHHHHHHHHCC--CHHHHHHHHHHHCCCCCCCCEEEEEC
T ss_conf 3626996156767776655-----------5687777269999999998188--40579999998669730171899947
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCC--CCCEEEEEECCCCCCHHHHHH-HHHHHHH-HCCCHHH
Q ss_conf 99566899998677546887788633334442110013323--763047841154441013568-8755444-2045045
Q 002680 636 PGIHSYRNPNLSESTYSKPVDHGAIWSSDGKFLGSVETSVV--GLSHLFRTAADSNGTQIKKLA-AFLGKSF-SAHGMLK 711 (893)
Q Consensus 636 PG~H~g~~~~~~e~~~G~~rl~n~~~~~~~s~LgSv~~s~~--gls~l~~q~~DSs~atLg~~~-~fL~k~~-~~~~~~E 711 (893)
||+|.+.+.. .||+++| .+.|..+..... ...+++.|+ ||+++||..+ +||...+ .++....
T Consensus 215 PG~h~~~~~~----~~G~~~L--------~~~L~~~~~~~~~~~~~~i~~Q~--SSIGslg~~~~~Wl~~~f~~sl~~~~ 280 (464)
T 1jy1_A 215 PGRFQGSQKD----NWGHFRL--------KKLLKDHASSMPNAESWPVVGQF--SSVGSLGADESKWLCSEFKESMLTLG 280 (464)
T ss_dssp SEEEEGGGGG----GSHHHHH--------HHHHHHHC-----CCSCCEEEEC--SCBCCCCSSTTTTTTTTHHHHHTCCC
T ss_pred CCCCCCCCCH----HHHHHHH--------HHHHHHHCCCCCCCCCCCEEEEE--ECCCCCCCCHHHHHHHHHHHHHHHHC
T ss_conf 8577688512----0258999--------99999734577766788679995--13443676346778999999763202
Q ss_pred HHHCCCCCCCCCCCCEEEEECCCCCCC-------CCCEEE--------CCCCCHHCCCCCCCCCCCCCCEEECCCCHHHH
Q ss_conf 353038899889997299902997323-------786152--------46762000111488887654113024554899
Q 002680 712 ILLRRNTNVPADANAVSVLVPNPDELS-------DGDCIQ--------LGFMPRDIAKWVSPLWDIGFIRFSGFISRDEV 776 (893)
Q Consensus 712 ~v~~sn~n~P~~~~~~~IIfPT~deVr-------sg~skQ--------L~fL~~~l~kW~s~~~D~~~~~f~g~~~p~~~ 776 (893)
+.+.......++++|||||.++|| +|+++. ..||++|||+|.++
T Consensus 281 ---~~~~~~~~~~~~~~iifPT~e~Vr~S~~G~~~ggsi~~~~~~~~~~~~l~~~l~~w~~~------------------ 339 (464)
T 1jy1_A 281 ---KESKTPGKSSVPLYLIYPSVENVRTSLEGYPAGGSLPYSIQTAEKQNWLHSYFHKWSAE------------------ 339 (464)
T ss_dssp ------------CCCEEEECCBHHHHHTSSSCGGGGGGSCCCHHHHTTCGGGGGGEECCCCG------------------
T ss_pred ---CCCCCCCCCCCCEEEECCCHHHHHHCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHCCC------------------
T ss_conf ---35666445788638983888998735035677640244613322124468899875267------------------
Q ss_pred HHHHHHCCCCEEEEEEEECCCCCHH
Q ss_conf 9998404443057987001699946
Q 002680 777 LAAALEGISKKVQLILHVSQGPKFS 801 (893)
Q Consensus 777 l~~a~g~~~~~~ql~~~~~~~~~f~ 801 (893)
..||.++++|+++|++-.+++.
T Consensus 340 ---~~~R~~a~pHiKty~r~~~~~~ 361 (464)
T 1jy1_A 340 ---TSGRSNAMPHIKTYMRPSPDFS 361 (464)
T ss_dssp ---GGTCTTSCBCCEEEEEECTTSS
T ss_pred ---CCCCCCCCCCEEEEEECCCCCC
T ss_conf ---6677776875025872178877
No 2
>1q32_A TDP1P;, tyrosyl-DNA phosphodiesterase; DNA repair, replication, transcription, hydrolase, replication,transcription, hydrolase; 2.03A {Saccharomyces cerevisiae} SCOP: d.136.1.3 d.136.1.3
Probab=1.00 E-value=1 Score=475.15 Aligned_cols=334 Identities=12% Similarity=0.091 Sum_probs=242.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCC---CCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 24445555687777666889899999867998815578879---999862334125884127698986301266666320
Q 002680 388 VDRQNATHFGSMDKSKSLGSSCSPPGKKFYLNRLEFMDLTS---LNYDVISLPELLYPVESISRMFIATFTSDILWFMSY 464 (893)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~gspF~LtrI~~lp~~~---~n~~tISL~DLLgP~~~L~~ailsnF~iDidWLLs~ 464 (893)
|++..++...+++.++... ..+++||+|++++.++.+. .|.++|+|+|||++ ++|++||+||||+|++|||++
T Consensus 57 vi~l~~~~~~~~~~~~~~~---~~~~spf~L~~~~~~~~~~~~~~n~~~isl~dlL~~-~~l~~a~~~nF~~Di~WLl~~ 132 (544)
T 1q32_A 57 IIDLTNQEQDLSERIETND---TAKGAVFKLMKSDFYEREDFMGEVEDMITLKDIFGT-ETLKRSILFSFQYELDFLLRQ 132 (544)
T ss_dssp -------------------------CCEEEEECCTTTTCCC-------EECHHHHHCC-TTEEEEEEECSCEEHHHHHTT
T ss_pred EEECCCCCCCCCCCCCCCC---CCCCCCEEEEEECCCCCCCCCCCCCCCEEHHHHCCC-CHHHHHHHHHHHHHHHHHHHH
T ss_conf 6887786421123575334---577998699985455765556789982667997588-228999988878759999963
Q ss_pred CCC-CCCCCEEEEECCCCCCCCCCCCCCCCCC---CCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCC-
Q ss_conf 599-9997599998057654446867767778---89999919995899864123665557885421140999984792-
Q 002680 465 CEI-PSHLPVTIACHNTERCWSTSADKRTSVP---YPNFPNLVLVFPPFPESVAFGENCKKQGIACHHPKLFVLQREDS- 539 (893)
Q Consensus 465 f~~-~r~lpVtIVvh~~~g~wk~e~~~rl~~~---~~~~pNv~lv~PpLPe~IaFG~d~~~~g~GtHHSKLmIL~y~D~- 539 (893)
|+. .+ ||+||.+. |+.+.+++..+. ...+||+++|+|+|| + || |||||||||+|+|+
T Consensus 133 ~~~~~~--~v~iv~g~----~~~~~~~r~~~~~~~~~~~~nv~l~~p~mp--~-fG---------thHSKmmlL~y~dg~ 194 (544)
T 1q32_A 133 FHQNVE--NITIVGQK----GTIMPIEARAMDATLAVILKKVKLIEITMP--P-FA---------SHHTKLIINFYDNGE 194 (544)
T ss_dssp SCTTCC--EEEEEEET----TCEECCCGGGCCHHHHHHHTTEEEEEECCC--T-TC---------CBCCCEEEEEESTTE
T ss_pred CCCCCC--CEEEEECC----CCCCCHHHHHHHHHHHCCCCCEEEEECCCC--C-CC---------CCCCEEEEEEECCCC
T ss_conf 764578--38999568----867751344545876403797389937898--7-78---------777503899966998
Q ss_pred EEEEEECCCCCHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHH-HHH
Q ss_conf 7999928999977431345869965277888999666455798322368897847999999999812499843699-975
Q 002680 540 IRVIVTSANLGAKQWNAVTNTVWWQDFPRRCAPDYLSLFVQTPVEEINQDSRSDFTAQLASFMASLVIDVPSQAHW-IVE 618 (893)
Q Consensus 540 LRVVI~TANLi~~DW~~~TQ~VWiQDFPrl~~~~~~~~~~~~~~~e~~~~s~sdFk~dL~~YL~sy~~~~ps~~~l-i~~ 618 (893)
||||||||||++.||+++||++|+|| +++... .+.+++|+.||++||++|+. |.+..| ++.
T Consensus 195 lRVVI~TANLi~~DW~~~tQ~vW~sp--~lp~~s--------------~g~~~~Fk~dL~~yL~ay~~--~~l~~~ii~~ 256 (544)
T 1q32_A 195 CKIFLPSNNFTSMETNLPQQVCWCSP--LLKIGK--------------EGLPVPFKRSLIEYLNSYHL--KDIDELITKS 256 (544)
T ss_dssp EEEEEESSCBSHHHHHSSBCEEEECC--CEEECC--------------CSSCCHHHHHHHHHHHTTCC--HHHHHHTHHH
T ss_pred EEEEEECCCCCHHHHCCCCCEEEECC--CCCCCC--------------CCCCCCHHHHHHHHHHHCCC--CCCCHHHHHH
T ss_conf 89999589899678555465299777--665667--------------78888539999999997298--5432588999
Q ss_pred HCCCCCCCC-CEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEC--CCC-CCCEEEEEECCCCCCHHH
Q ss_conf 125346654-1899970499566899998677546887788633334442110013--323-763047841154441013
Q 002680 619 LTKYDFASA-AGHLVASVPGIHSYRNPNLSESTYSKPVDHGAIWSSDGKFLGSVET--SVV-GLSHLFRTAADSNGTQIK 694 (893)
Q Consensus 619 L~kyDFSsa-kv~LVaSVPG~H~g~~~~~~e~~~G~~rl~n~~~~~~~s~LgSv~~--s~~-gls~l~~q~~DSs~atLg 694 (893)
|++||||.+ +|+||+||||+|.+ |||++| .+.|..+.. ..- ..++++.|+ ||+++|+
T Consensus 257 l~~~DFS~~~~v~lV~SvPG~h~~---------~G~~~L--------~~~L~~~~~~~~~~~~~~~iv~Q~--SSIGs~l 317 (544)
T 1q32_A 257 VEEVNFAPLSELEFVYSTPSKFQS---------SGLLSF--------YNKLEKLSAGTSASDTAKHYLCQT--SSIGTSL 317 (544)
T ss_dssp HHTEECGGGTTCEEEEECCCTTSC---------CHHHHH--------HHHHHHTC------CCEEEEEEEC--SBBCCCS
T ss_pred HHHCCCCCCCCEEEEEECCCCCCC---------CCHHHH--------HHHHHHHHCCCCCCCCCCCEEEEE--CCCCCCC
T ss_conf 875586347743899945776577---------428999--------999997402478877788679985--1544556
Q ss_pred HHHHHHHHHHHCCCHH-HHHH-CCCCCCC--C----------------CCCCEEEEECCCCCCC-------CCCEEE---
Q ss_conf 5688755444204504-5353-0388998--8----------------9997299902997323-------786152---
Q 002680 695 KLAAFLGKSFSAHGML-KILL-RRNTNVP--A----------------DANAVSVLVPNPDELS-------DGDCIQ--- 744 (893)
Q Consensus 695 ~~~~fL~k~~~~~~~~-E~v~-~sn~n~P--~----------------~~~~~~IIfPT~deVr-------sg~skQ--- 744 (893)
..++||+.+..++... +..+ ..+.+.+ . ..++++|||||.++|| +|+|+.
T Consensus 318 ~~~~Wl~~f~~~l~~~~~g~~~~~~~~~~~~~k~~~~~~~~l~~~~~~~~~~~~IIfPT~e~Vr~S~~G~~~Ggsi~~~~ 397 (544)
T 1q32_A 318 SRARDENLWTHLMIPLFTGIMSPPAKDTAGRKKAEILPTNSLINEYSQRKIKPYIIFPTEQEFVTSPLKWSSSGWFHFQY 397 (544)
T ss_dssp CSSSCCCHHHHTHHHHHHTSCCCC-----------CCCHHHHHHHHHHHTEEEEEECCBSGGGTTSTTGGGGGGGCBCCC
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCEEECCCHHHHHHCCCCCCCCCEEEECC
T ss_conf 75116999999976441243346766655554322345210001222357774598178899862302567663377323
Q ss_pred -------CCCCCHHCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHCCCCEEEEEEEECCC
Q ss_conf -------46762000111488887654113024554899999840444305798700169
Q 002680 745 -------LGFMPRDIAKWVSPLWDIGFIRFSGFISRDEVLAAALEGISKKVQLILHVSQG 797 (893)
Q Consensus 745 -------L~fL~~~l~kW~s~~~D~~~~~f~g~~~p~~~l~~a~g~~~~~~ql~~~~~~~ 797 (893)
+.||++++|+|.++..| ...||.++++|+++|++-.
T Consensus 398 ~~~~~~~~~~l~~~~~~w~~~~~~-----------------~~s~R~~a~PHiKty~r~~ 440 (544)
T 1q32_A 398 LQKKSYYEMLRNKFKVFYKQDPAM-----------------VTRRRGTTPAHSKFYMHCA 440 (544)
T ss_dssp GGGHHHHHHHHHTSCCEEECCTTT-----------------SCTTTTTCCBCCEEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHCCCCCCC-----------------CCCCCCCCCCCEEEEEEEC
T ss_conf 112566667776654320477765-----------------6689988667238999532
No 3
>3sq7_A Tyrosyl-DNA phosphodiesterase 1; DNA binding, nuclear, hydrolase; 2.00A {Saccharomyces cerevisiae} PDB: 3sq5_A 3sq8_A* 3sq3_A
Probab=1.00 E-value=1 Score=442.69 Aligned_cols=314 Identities=12% Similarity=0.139 Sum_probs=229.7
Q ss_pred CCCEEEEEECCCCCC---CCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCC
Q ss_conf 986799881557887---99998623341258841276989863012666663205999997599998057654446867
Q 002680 413 GKKFYLNRLEFMDLT---SLNYDVISLPELLYPVESISRMFIATFTSDILWFMSYCEIPSHLPVTIACHNTERCWSTSAD 489 (893)
Q Consensus 413 gspF~LtrI~~lp~~---~~n~~tISL~DLLgP~~~L~~ailsnF~iDidWLLs~f~~~r~lpVtIVvh~~~g~wk~e~~ 489 (893)
+.+|+|+++++|+.+ ..|.++|+|+|||++. +|++||+||||+|++|||++|+.. ..|++|++. ++.|+....
T Consensus 2 ~~~fkL~~~~~y~~~~~~~~n~d~ItL~DlL~~~-~L~~avlfnF~~Di~WLl~~~~~~-~~~v~iv~~--~g~~~~~~~ 77 (470)
T 3sq7_A 2 GAVFKLMKSDFYEREDFMGEVEDMITLKDIFGTE-TLKRSILFSFQYELDFLLRQFHQN-VENITIVGQ--KGTIMPIEA 77 (470)
T ss_dssp CCEEEEECCTTTSCCC-------EECHHHHHCCT-TEEEEEEECSCEEHHHHHTTSCTT-CCEEEEEEE--TTSEECCCG
T ss_pred CCCEEEEEECCCCCCCCCCCCCCCEEHHHHCCCC-HHHHHHHHHHHHCHHHHHHHCCCC-CCCEEEEEE--CCCCCCCCH
T ss_conf 9843897406767655556898805699962871-277877345240598999647624-586699995--896454410
Q ss_pred CCCC-CCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECC-CEEEEEECCCCCHHHHCCCCCEEEEECCC
Q ss_conf 7677-788999991999589986412366555788542114099998479-27999928999977431345869965277
Q 002680 490 KRTS-VPYPNFPNLVLVFPPFPESVAFGENCKKQGIACHHPKLFVLQRED-SIRVIVTSANLGAKQWNAVTNTVWWQDFP 567 (893)
Q Consensus 490 ~rl~-~~~~~~pNv~lv~PpLPe~IaFG~d~~~~g~GtHHSKLmIL~y~D-~LRVVI~TANLi~~DW~~~TQ~VWiQDFP 567 (893)
.++. .....+||+++|.|+|| +|| |||||||||+|+| ++|||||||||+++||+..||++| |||
T Consensus 78 ~~~~~~~~~~~~nv~~i~~~mP---~fG---------thHsKmmlL~y~dg~~RVvI~TANl~~~Dw~~~tq~~W--~~P 143 (470)
T 3sq7_A 78 RAMDATLAVILKKVKLIEITMP---PFA---------SHHTKLIINFYDNGECKIFLPSNNFTSMETNLPQQVCW--CSP 143 (470)
T ss_dssp GGCCHHHHHHHTTEEEEEECCC---TTC---------CBCCCEEEEEETTSEEEEEEESSCBSHHHHHSSBCEEE--ECC
T ss_pred HHHHHHHHHHCCCCEEEECCCC---CCC---------CCCCEEEEEEECCCCEEEEEECCCCCHHHHCCCCEEEE--ECC
T ss_conf 1335777753698448842788---867---------86531489996699789999269888546166540799--725
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCH-HHHHHHHCCCCCCCCC-EEEEEECCCCCCCCCCC
Q ss_conf 888999666455798322368897847999999999812499843-6999751253466541-89997049956689999
Q 002680 568 RRCAPDYLSLFVQTPVEEINQDSRSDFTAQLASFMASLVIDVPSQ-AHWIVELTKYDFASAA-GHLVASVPGIHSYRNPN 645 (893)
Q Consensus 568 rl~~~~~~~~~~~~~~~e~~~~s~sdFk~dL~~YL~sy~~~~ps~-~~li~~L~kyDFSsak-v~LVaSVPG~H~g~~~~ 645 (893)
+++.++ ...+++|+.||++||++|+. +.+ +.|++.|++||||+++ |+||+||||+|.
T Consensus 144 ~l~~~~--------------~~~~s~Fk~dL~~yL~~y~~--~~l~~~~i~~l~~~DFS~~~~v~lV~SvPG~~~----- 202 (470)
T 3sq7_A 144 LLKIGK--------------EGLPVPFKRSLIEYLNSYHL--KDIDELITKSVEEVNFAPLSELEFVYSTPSKFQ----- 202 (470)
T ss_dssp CEEECC--------------CCSCCHHHHHHHHHHHTTCC--HHHHHHTHHHHHTEECGGGTTCEEEEECCCTTS-----
T ss_pred CCCCCC--------------CCCCCCCHHHHHHHHHHHCC--CHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCC-----
T ss_conf 776888--------------88878528999999998287--155789999997579877872799994687786-----
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCEECCCC---CCCEEEEEECCCCCCH-HHHHH--HHHHHHH-HCCCH-H----HH-
Q ss_conf 8677546887788633334442110013323---7630478411544410-13568--8755444-20450-4----53-
Q 002680 646 LSESTYSKPVDHGAIWSSDGKFLGSVETSVV---GLSHLFRTAADSNGTQ-IKKLA--AFLGKSF-SAHGM-L----KI- 712 (893)
Q Consensus 646 ~~e~~~G~~rl~n~~~~~~~s~LgSv~~s~~---gls~l~~q~~DSs~at-Lg~~~--~fL~k~~-~~~~~-~----E~- 712 (893)
.|||++| .+.|..++.... ...+++.|+ ||+++ ||... .|+...+ .++.. . +.
T Consensus 203 ----~~G~~~L--------~~~L~~~~~~~~~~~~~~~iv~Q~--SSIGs~l~~~~~~~~f~~~l~~~lsg~~~~~~~~~ 268 (470)
T 3sq7_A 203 ----SSGLLSF--------YNKLEKLSAGTSASDTAKHYLCQT--SSIGTSLSRARDENLWTHLMIPLFTGIMSPPAKDT 268 (470)
T ss_dssp ----CCHHHHH--------HHHHHHHTTTCCCCSSCEEEEEEC--SBBCCCSCSSSCCCHHHHTHHHHHHTSCCCC----
T ss_pred ----CCHHHHH--------HHHHHHHCCCCCCCCCCCCEEEEE--CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf ----5028999--------999997256777656788689995--78666779865315789999987633667654443
Q ss_pred HHCCCCCCC----------CCCCCEEEEECCCCCCC-------CCCE---------EECCCCC---HHCCCCCCCCCCCC
Q ss_conf 530388998----------89997299902997323-------7861---------5246762---00011148888765
Q 002680 713 LLRRNTNVP----------ADANAVSVLVPNPDELS-------DGDC---------IQLGFMP---RDIAKWVSPLWDIG 763 (893)
Q Consensus 713 v~~sn~n~P----------~~~~~~~IIfPT~deVr-------sg~s---------kQL~fL~---~~l~kW~s~~~D~~ 763 (893)
..++....| ....+++|||||++||| +|+| +|..||+ +|++||.++.-
T Consensus 269 ~g~~~~~~p~~~~~~~~~~~~~~~~~iIfPTveeVr~S~~Gy~aGgsip~~~~~~~~q~~~l~~~~~~~~kw~~~~~--- 345 (470)
T 3sq7_A 269 AGRKKAEILPTNSLINEYSQRKIKPYIIFPTEQEFVTSPLKWSSSGWFHFQYLQKKSYYEMLRNKFKVFYKQDPAMV--- 345 (470)
T ss_dssp -------CCCHHHHHHHHHHTTEEEEEECCBTGGGTTSTTGGGGGGGCBCCCGGGHHHHHHHHHTSCCEEECCTTTS---
T ss_pred CCCCCCCCCCCCCHHHHHCCCCCCEEEECCCHHHHHCCCCCCCCCCEEEECCCCHHHHHHHHHCCCCEEECCCCCCC---
T ss_conf 44332236775200111015798708983888997428034664744662442367788987302211761467677---
Q ss_pred CCEEECCCCHHHHHHHHHHCCCCEEEEEEEECCCC
Q ss_conf 41130245548999998404443057987001699
Q 002680 764 FIRFSGFISRDEVLAAALEGISKKVQLILHVSQGP 798 (893)
Q Consensus 764 ~~~f~g~~~p~~~l~~a~g~~~~~~ql~~~~~~~~ 798 (893)
..||..+++|+++||+-.+
T Consensus 346 ----------------~~~R~~a~PHiKtY~r~s~ 364 (470)
T 3sq7_A 346 ----------------TRRRGTTPANSKFYMHCAT 364 (470)
T ss_dssp ----------------CTTTTTCCBCCEEEEEEEC
T ss_pred ----------------CCCCCCCCCCEEEEEEECC
T ss_conf ----------------7777776871588998525
No 4
>4h87_A Kanadaptin; FHA domain of PF00498, mRNA processing, nucleus, structural joint center for structural genomics, JCSG, protein structu initiative; HET: SO4; 1.55A {Homo sapiens}
Probab=1.00 E-value=1 Score=135.91 Aligned_cols=100 Identities=23% Similarity=0.269 Sum_probs=76.7
Q ss_pred EEEEEEEECCCCCCCEEEEECCCCCEEECCCCCCCCEEECCCCCCCCEEEEEECCCCCEEEECCCCCCCCCCCCCCCHHH
Q ss_conf 34346875389996115981599978985899988889547865544089998157533784178533555542200100
Q 002680 46 ILHLPLVSTATGSPVDSLTLEPDRPYSIGRASINCDFTFDNRLVSRQHCQILFDSSERKIYVLDGTFLLPAFSSVVNEFR 125 (893)
Q Consensus 46 ~~~~~lis~~~g~~~~~i~L~~d~~ytIGR~~~~cDivi~d~~VSr~Hc~I~fd~~~~k~yi~~g~~~~~~~~~~v~~~r 125 (893)
.++|.++.+ |..++.+.|.....|+|||++ +|||+++|+.|||+||+|.|+........ ..
T Consensus 20 ~~~L~v~k~--g~~~~~~~L~~~~~~~IGR~~-~~di~l~~~~VSr~HA~I~~r~~~~~~~~----------------~~ 80 (130)
T 4h87_A 20 PYSLETLKG--GTILGTRSLKGTSYCLFGRLS-GCDVCLEHPSVSRYHAVLQHRASGPDGEC----------------DS 80 (130)
T ss_dssp CCEEEEEET--TEEEEEEECTTCSEEEEESST-TSSEECCCTTSCSSCEEEEEBCCCCCC--------------------
T ss_pred CEEEEEEEC--CEEEEEEEECCCCEEEECCCC-CCCEEECCCCCCHHCEEEEEECCCCCCCE----------------EC
T ss_conf 979999989--945116982898249986884-78999689981502479998236674302----------------11
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCEEECCEECCCCCEEECCCCCEEEE
Q ss_conf 0245433573101245433455463288998806887143899999999
Q 002680 126 KKRDKSLEDEEEDEGFSRVMVSLNGVFVNGIRLKSGIVRELNAGDEVLF 174 (893)
Q Consensus 126 ~~~~~~i~D~~~~~~L~~~~~StNGTfVNG~RI~~~~~~~L~~GD~I~l 174 (893)
....++|+| | +|+|||||||+||.++++++|.+||+|.|
T Consensus 81 ~~~~~~l~D------l----~StNGT~vNg~ri~~~~~~~L~~GD~I~~ 119 (130)
T 4h87_A 81 NGPGFYLYD------L----GSTHGTFLNKTRIPPRTYCRVHVGHVVRF 119 (130)
T ss_dssp --CCEEEEE------C----SCSSCEEETTEECCTTCCEECCTTCEEEE
T ss_pred CCCCCEEEE------C----CCCCCEEECCEECCCCCEEECCCCCEEEE
T ss_conf 378326852------8----99875689999988995169999999998
No 5
>3elv_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 2.40A {Saccharomyces cerevisiae} PDB: 2jkd_A
Probab=1.00 E-value=1 Score=130.74 Aligned_cols=98 Identities=22% Similarity=0.321 Sum_probs=77.7
Q ss_pred EEEEEEEECCC--CCCCEEEEECCCCCEEECCCC--------------CCCCEEECCCCCCCCEEEEEECCCCCEEEECC
Q ss_conf 34346875389--996115981599978985899--------------98888954786554408999815753378417
Q 002680 46 ILHLPLVSTAT--GSPVDSLTLEPDRPYSIGRAS--------------INCDFTFDNRLVSRQHCQILFDSSERKIYVLD 109 (893)
Q Consensus 46 ~~~~~lis~~~--g~~~~~i~L~~d~~ytIGR~~--------------~~cDivi~d~~VSr~Hc~I~fd~~~~k~yi~~ 109 (893)
.+.+.++.... ..+++.+.|.....|+|||++ ..|||+|+|+.|||+||+|.++.....
T Consensus 78 ~~~L~v~k~g~k~~~~i~~~~L~~~s~y~IGR~~~~~~~~~~~~~~e~~~cDIvL~dp~VSR~HA~I~~~~~~~~----- 152 (205)
T 3elv_A 78 MYELVIYRKNDKDKGPWKRYDLNGRSCYLVGRELGHSLDTDLDDRTEIVVADIGIPEETSSKQHCVIQFRNVRGI----- 152 (205)
T ss_dssp CEEEEEEEGGGCTTCCSEEEECSSCSEEEEEECCCC---------CCCCCCSEEECCTTSCTTCEEEEEEEETTE-----
T ss_pred CEEEEEEECCCCCCCCCEEEEECCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCEEEEEECCCCC-----
T ss_conf 268999969976653103799358874353223554544333223567432089699998720189999668981-----
Q ss_pred CCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEECCEECCCCCEEECCCCCEEEEEE
Q ss_conf 8533555542200100024543357310124543345546328899880688714389999999981
Q 002680 110 GTFLLPAFSSVVNEFRKKRDKSLEDEEEDEGFSRVMVSLNGVFVNGIRLKSGIVRELNAGDEVLFVC 176 (893)
Q Consensus 110 g~~~~~~~~~~v~~~r~~~~~~i~D~~~~~~L~~~~~StNGTfVNG~RI~~~~~~~L~~GD~I~l~~ 176 (893)
..| +|+| | +|+|||||||+||.++.+++|.+||+|.|+.
T Consensus 153 ------------~~~------~l~D------L----gStNGTfVNG~rI~~~~~~~L~~GD~I~fG~ 191 (205)
T 3elv_A 153 ------------LKC------YVMD------L----DSSNGTCLNNVVIPGARYIELRSGDVLTLSE 191 (205)
T ss_dssp ------------EEE------EEEE------C----SCSSCCEETTEECCBTSCEECCTTCEEESSS
T ss_pred ------------EEE------EEEE------C----CCCCCCEECCEECCCCCEEECCCCCEEEECC
T ss_conf ------------269------9996------9----9899886999998899615879999999798
No 6
>3els_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 1.80A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=126.18 Aligned_cols=97 Identities=23% Similarity=0.335 Sum_probs=77.5
Q ss_pred EEEEEEECCC--CCCCEEEEECCCCCEEECCCC--------------CCCCEEECCCCCCCCEEEEEECCCCCEEEECCC
Q ss_conf 4346875389--996115981599978985899--------------988889547865544089998157533784178
Q 002680 47 LHLPLVSTAT--GSPVDSLTLEPDRPYSIGRAS--------------INCDFTFDNRLVSRQHCQILFDSSERKIYVLDG 110 (893)
Q Consensus 47 ~~~~lis~~~--g~~~~~i~L~~d~~ytIGR~~--------------~~cDivi~d~~VSr~Hc~I~fd~~~~k~yi~~g 110 (893)
+.+.++.+.. ..+++.+.|..++.|+|||++ ..|||+++++.|||+||+|.++......
T Consensus 32 ~~l~v~k~g~~~~~~~~~~~L~~~~~~~IGR~~~~~~~~~~~~~n~~~~~Di~l~~~~VSr~HA~I~~~~~~~~~----- 106 (158)
T 3els_A 32 YELVIYRKNDKDKGPWKRYDLNGRSCYLVGRELGHSLDTDLDDRTEIVVADIGIPEETSSKQHCVIQFRNVRGIL----- 106 (158)
T ss_dssp EEEEEEEGGGGGGCCSEEEECSSCSEEEEEECCCC---------CCCCCCSEEECCTTSCSSCEEEEEEEETTEE-----
T ss_pred EEEEEEECCCCCCCCCEEEEECCCCCEEECCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCEEEEEECCCCEE-----
T ss_conf 699999699667632038995698716763454555433333225662078976999888242899998158813-----
Q ss_pred CCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEECCEECCCCCEEECCCCCEEEEEE
Q ss_conf 533555542200100024543357310124543345546328899880688714389999999981
Q 002680 111 TFLLPAFSSVVNEFRKKRDKSLEDEEEDEGFSRVMVSLNGVFVNGIRLKSGIVRELNAGDEVLFVC 176 (893)
Q Consensus 111 ~~~~~~~~~~v~~~r~~~~~~i~D~~~~~~L~~~~~StNGTfVNG~RI~~~~~~~L~~GD~I~l~~ 176 (893)
.| +++| | +|+|||||||+||.++++++|.+||+|.|+.
T Consensus 107 ------------~~------~l~D------l----~StNGT~VNg~ri~~~~~~~L~~GD~I~~G~ 144 (158)
T 3els_A 107 ------------KC------YVMD------L----DSSNGTCLNNVVIPGARYIELRSGDVLTLSE 144 (158)
T ss_dssp ------------EE------EEEE------C----SCSSCCEETTEECCTTCCEECCTTEEEESSS
T ss_pred ------------EE------EEEE------C----CCCCCCEECCEECCCCCEEECCCCCEEEECC
T ss_conf ------------79------9996------9----9888667999996799658837999999878
No 7
>1qu5_A Protein kinase SPK1; FHA, RAD53, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2
Probab=1.00 E-value=1 Score=123.44 Aligned_cols=94 Identities=23% Similarity=0.415 Sum_probs=69.0
Q ss_pred EEEECCC-CCEEECCCCCCCCEEECCCCCCCCEEEEEECCCCCEEEECCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCC
Q ss_conf 5981599-978985899988889547865544089998157533784178533555542200100024543357310124
Q 002680 62 SLTLEPD-RPYSIGRASINCDFTFDNRLVSRQHCQILFDSSERKIYVLDGTFLLPAFSSVVNEFRKKRDKSLEDEEEDEG 140 (893)
Q Consensus 62 ~i~L~~d-~~ytIGR~~~~cDivi~d~~VSr~Hc~I~fd~~~~k~yi~~g~~~~~~~~~~v~~~r~~~~~~i~D~~~~~~ 140 (893)
.+.|..+ .+++|||++ +||++++|+.|||+||+|.++.... ....++.|+. -...| +|+|
T Consensus 43 ~i~L~~~~~~~~IGR~~-~~di~l~d~~VSr~HA~I~~~~~~~----g~~~~e~~~~--~~~~~------~l~D------ 103 (182)
T 1qu5_A 43 SLEIQQGVNPFFIGRSE-DCNCKIEDNRLSRVHCFIFKKRHAV----GKSMYESPAQ--GLDDI------WYCH------ 103 (182)
T ss_dssp CCCBTTCCSSEEESSST-TSSSCCCCTTSCSSCEEEEEECCCC----CSSCCSSCCC--SCCEE------EECC------
T ss_pred EEEECCCCCEEEECCCC-CCCEEECCCCCCHHHEEEEEECCCC----CCCCCCCCCC--CCCEE------EEEE------
T ss_conf 89976898149977898-8878979988396795999935766----5432234446--65509------9998------
Q ss_pred CCCCCCCCCCEEECCEECCCCCEEECCCCCEEEEEECCC
Q ss_conf 543345546328899880688714389999999981897
Q 002680 141 FSRVMVSLNGVFVNGIRLKSGIVRELNAGDEVLFVCRDE 179 (893)
Q Consensus 141 L~~~~~StNGTfVNG~RI~~~~~~~L~~GD~I~l~~g~~ 179 (893)
.|+|||||||+||.++..+.|.+||+|.|++...
T Consensus 104 -----lStNGT~VNg~ri~~~~~~~L~~GD~I~l~~d~~ 137 (182)
T 1qu5_A 104 -----TGTNVSYLNNNRMIQGTKFLLQDGDEIKIIWDKN 137 (182)
T ss_dssp -----CSSSCCEETTEECCSSEEEECCTTBCCEEEEEGG
T ss_pred -----CCCCCEEECCEECCCCCCEECCCCCEEEEEECCC
T ss_conf -----9958848999996799656848999999987689
No 8
>2jpe_A Nuclear inhibitor of protein phosphatase 1; FHA domain, NIPP1, mRNA splicing, transcription; NMR {Mus musculus}
Probab=1.00 E-value=1 Score=123.03 Aligned_cols=91 Identities=29% Similarity=0.503 Sum_probs=73.3
Q ss_pred EEEEEEECCCCCCCEEEEECCCCCEEECCCCCC-CCEEECCCCCCCCEEEEEECCCCCEEEECCCCCCCCCCCCCCCHHH
Q ss_conf 434687538999611598159997898589998-8889547865544089998157533784178533555542200100
Q 002680 47 LHLPLVSTATGSPVDSLTLEPDRPYSIGRASIN-CDFTFDNRLVSRQHCQILFDSSERKIYVLDGTFLLPAFSSVVNEFR 125 (893)
Q Consensus 47 ~~~~lis~~~g~~~~~i~L~~d~~ytIGR~~~~-cDivi~d~~VSr~Hc~I~fd~~~~k~yi~~g~~~~~~~~~~v~~~r 125 (893)
+.+.++.+.. ....+.|..+.+++|||++ + ||++++|+.|||+||+|.++.. ++ .|
T Consensus 35 ~~L~v~~g~~--~g~~~~l~~~~~~~IGR~~-~~~di~l~d~~VSr~Ha~i~~~~~-------~~------------~~- 91 (140)
T 2jpe_A 35 LHLDVVKGDK--LIEKLIIDEKKYYLFGRNP-DLCDFTIDHQSCSRVHAALVYHKH-------LK------------RV- 91 (140)
T ss_dssp CBEEEESSSS--EEEEECCSSCSBCCBSSCT-TTSSSCCCCSSSCTTSBEEEEBSS-------SC------------CE-
T ss_pred EEEEEECCCC--CCEEEEECCCCEEEECCCC-CCCCEEECCCCCCHHHEEEEEECC-------CC------------CE-
T ss_conf 7999983997--5138996899839966897-668989389896823539999888-------89------------59-
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCEEECCEECCCCCEEECCCCCEEEEE
Q ss_conf 02454335731012454334554632889988068871438999999998
Q 002680 126 KKRDKSLEDEEEDEGFSRVMVSLNGVFVNGIRLKSGIVRELNAGDEVLFV 175 (893)
Q Consensus 126 ~~~~~~i~D~~~~~~L~~~~~StNGTfVNG~RI~~~~~~~L~~GD~I~l~ 175 (893)
+|+| | +|+|||||||+||.++..+.|.+||+|.|+
T Consensus 92 -----~l~D------l----~S~NGT~vNg~~l~~~~~~~L~~gd~i~~G 126 (140)
T 2jpe_A 92 -----FLID------L----NSTHGTFLGHIRLEPHKPQQIPIDSTVSFG 126 (140)
T ss_dssp -----EEEC------C----SCSSCEESSSCEECSSSCCEECTTCCBBCS
T ss_pred -----EEEE------C----CCCCCEEECCEECCCCCCEECCCCCEEEEC
T ss_conf -----9998------9----899983899999779953797899999989
No 9
>1dmz_A Protein (protein kinase SPK1); beta-sandwich, antiparallel beta-sheets, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1fhq_A 1fhr_A* 1j4k_A* 1j4l_A* 1k2m_A* 1k2n_A*
Probab=1.00 E-value=1 Score=119.53 Aligned_cols=95 Identities=23% Similarity=0.420 Sum_probs=69.4
Q ss_pred EEEEECCC-CCEEECCCCCCCCEEECCCCCCCCEEEEEECCCCCEEEECCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCC
Q ss_conf 15981599-97898589998888954786554408999815753378417853355554220010002454335731012
Q 002680 61 DSLTLEPD-RPYSIGRASINCDFTFDNRLVSRQHCQILFDSSERKIYVLDGTFLLPAFSSVVNEFRKKRDKSLEDEEEDE 139 (893)
Q Consensus 61 ~~i~L~~d-~~ytIGR~~~~cDivi~d~~VSr~Hc~I~fd~~~~k~yi~~g~~~~~~~~~~v~~~r~~~~~~i~D~~~~~ 139 (893)
..+.|..+ .+++|||++ +||++++|+.|||+||+|.++.... ...+++.|+. -...| +++|
T Consensus 18 ~~i~L~~~~~~~~IGR~~-~~di~l~d~~VSr~Ha~I~~~~~~~----g~~~~~~~~~--~~~~~------~l~D----- 79 (158)
T 1dmz_A 18 ESLEIQQGVNPFFIGRSE-DCNCKIEDNRLSRVHCFIFKKRHAV----GKSMYESPAQ--GLDDI------WYCH----- 79 (158)
T ss_dssp CCEEETTSCSCEEEESST-TSSEECCCTTSCSSSEEEEEEECCC----CCCCSSCSCS--SCEEE------EEEE-----
T ss_pred EEEEECCCCCEEEECCCC-CCCEEECCCCCCHHHEEEEEECCCC----CCCCCCCCCC--CCCCE------EEEE-----
T ss_conf 089975898459977899-9888969998186892999956766----5432334546--55409------9998-----
Q ss_pred CCCCCCCCCCCEEECCEECCCCCEEECCCCCEEEEEECCC
Q ss_conf 4543345546328899880688714389999999981897
Q 002680 140 GFSRVMVSLNGVFVNGIRLKSGIVRELNAGDEVLFVCRDE 179 (893)
Q Consensus 140 ~L~~~~~StNGTfVNG~RI~~~~~~~L~~GD~I~l~~g~~ 179 (893)
.|+|||||||+||.++..++|.+||+|.|++...
T Consensus 80 ------lStNGT~VNg~ri~~~~~~~L~~GD~I~l~~d~~ 113 (158)
T 1dmz_A 80 ------TGTNVSYLNNNRMIQGTKFLLQDGDEIKIIWDKN 113 (158)
T ss_dssp ------CSTTCCEETTEECCSSEEEECCSSCCEESCCCTT
T ss_pred ------CCCCCEEECCEECCCCCEEECCCCCEEEEEECCC
T ss_conf ------9969808999996899508937999999965489
No 10
>1uht_A Expressed protein; FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.26.1.2
Probab=1.00 E-value=1 Score=117.75 Aligned_cols=89 Identities=26% Similarity=0.426 Sum_probs=73.4
Q ss_pred EEEEEEEEECC-CCCCCEEEEECCCCCEEECCC-CCCCCEEECCCCCCCCEEEEEECCCCCEEEECCCCCCCCCCCCCCC
Q ss_conf 43434687538-999611598159997898589-9988889547865544089998157533784178533555542200
Q 002680 45 QILHLPLVSTA-TGSPVDSLTLEPDRPYSIGRA-SINCDFTFDNRLVSRQHCQILFDSSERKIYVLDGTFLLPAFSSVVN 122 (893)
Q Consensus 45 ~~~~~~lis~~-~g~~~~~i~L~~d~~ytIGR~-~~~cDivi~d~~VSr~Hc~I~fd~~~~k~yi~~g~~~~~~~~~~v~ 122 (893)
..+.+.+++++ .|. .+.|.++..++|||+ + .||++++|+.|||+||+|.++. +
T Consensus 11 p~l~L~v~~g~~~g~---~~~l~~~~~~~iGR~~~-~~di~l~d~~vSr~Ha~i~~~~---------~------------ 65 (118)
T 1uht_A 11 PSLRLVFVKGPREGD---ALDYKPGSTIRVGRIVR-GNEIAIKDAGISTKHLRIESDS---------G------------ 65 (118)
T ss_dssp CEEEEEESSSTTTTC---BCCBCTTCCEEEESSST-TCSEECCSSSSCTTCEEEEECS---------S------------
T ss_pred CEEEEEEEECCCCCC---EEEECCCCEEEECCCCC-CCCEEECCCCCCHHHEEEEEEC---------C------------
T ss_conf 769999982899971---99978999899748887-8889959988963774999989---------9------------
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCCCCEEECCEECCCCCEEECCCCCEEEE
Q ss_conf 1000245433573101245433455463288998806887143899999999
Q 002680 123 EFRKKRDKSLEDEEEDEGFSRVMVSLNGVFVNGIRLKSGIVRELNAGDEVLF 174 (893)
Q Consensus 123 ~~r~~~~~~i~D~~~~~~L~~~~~StNGTfVNG~RI~~~~~~~L~~GD~I~l 174 (893)
.| +++| | +|+|||||||++|.++..+.|.+||+|.|
T Consensus 66 ~~------~l~D------l----~S~nGT~vng~~l~~~~~~~L~~gd~i~l 101 (118)
T 1uht_A 66 NW------VIQD------L----GSSNGTLLNSNALDPETSVNLGDGDVIKL 101 (118)
T ss_dssp SE------EEEC------C----CCSSCCEESSSBCCTTCEEECCTTEEEEE
T ss_pred EE------EEEE------C----CCCCCEEECCEECCCCCEEECCCCCEEEE
T ss_conf 99------9999------9----89887399999978998589589999998
Done!