BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002682
(893 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2KHP|A Chain A, Solution Structure Of Glutaredoxin From Brucella
Melitensis
Length = 92
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 42/76 (55%)
Query: 427 VILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILM 486
VI+YTR GC + L K + EI+ P + E+++ +G + P++F + +
Sbjct: 8 VIIYTRPGCPYCARAKALLARKGAEFNEIDASATPELRAEMQERSGRNTFPQIFIGSVHV 67
Query: 487 GGLSELKALDESGKLD 502
GG +L AL++ GKLD
Sbjct: 68 GGCDDLYALEDEGKLD 83
>pdb|3GRX|A Chain A, Nmr Structure Of Escherichia Coli Glutaredoxin
3-Glutathione Mixed Disulfide Complex, 20 Structures
Length = 82
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 42/76 (55%)
Query: 427 VILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILM 486
V +YT+ C S + L K + + E+ ID +++ E+ K +G + VP++F + +
Sbjct: 3 VEIYTKETCPYSHRAKALLSSKGVSFQELPIDGNAAKREEMIKRSGRTTVPQIFIDAQHI 62
Query: 487 GGLSELKALDESGKLD 502
GG +L ALD G LD
Sbjct: 63 GGYDDLYALDARGGLD 78
>pdb|1FOV|A Chain A, Glutaredoxin 3 From Escherichia Coli In The Fully Oxidized
Form
Length = 82
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 41/76 (53%)
Query: 427 VILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILM 486
V +YT+ C + L K + + E+ ID +++ E+ K +G + VP++F + +
Sbjct: 3 VEIYTKETCPYCHRAKALLSSKGVSFQELPIDGNAAKREEMIKRSGRTTVPQIFIDAQHI 62
Query: 487 GGLSELKALDESGKLD 502
GG +L ALD G LD
Sbjct: 63 GGYDDLYALDARGGLD 78
>pdb|2KLX|A Chain A, Solution Structure Of Glutaredoxin From Bartonella
Henselae Str. Houston
Length = 89
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 27/87 (31%), Positives = 47/87 (54%), Gaps = 2/87 (2%)
Query: 420 PLVMKGRVILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKV 479
P MK +ILYTR C + R L K ++Y +I+ ++M +++ G + P++
Sbjct: 2 PGSMK-EIILYTRPNCPYCKRARDLLDKKGVKYTDIDASTSLRQEM-VQRANGRNTFPQI 59
Query: 480 FFNEILMGGLSELKALDESGKLDEKIE 506
F + +GG +L AL+ GKLD ++
Sbjct: 60 FIGDYHVGGCDDLYALENKGKLDSLLQ 86
>pdb|1O7F|A Chain A, Crystal Structure Of The Regulatory Domain Of Epac2
Length = 469
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 549 VVKDRFYKMRRFTNCFLGSEAVNFLSEDQYL--EREEAVEFGRKLASKLFFRHVLDENLF 606
+++DR Y ++ + C +G+E V+++ + R +AV + L HV E F
Sbjct: 209 MIRDRKYHLKTYRQCCVGTELVDWMIQQTSCVHSRTQAVGMWQVLLEDGVLNHVDQERHF 268
Query: 607 EDGNHLYRFLD 617
+D YRFLD
Sbjct: 269 QDKYLFYRFLD 279
>pdb|1B4Q|A Chain A, Solution Structure Of Human Thioltransferase Complex With
Glutathione
Length = 105
Score = 39.7 bits (91), Expect = 0.007, Method: Composition-based stats.
Identities = 28/104 (26%), Positives = 54/104 (51%), Gaps = 10/104 (9%)
Query: 411 QEVVKEPPQPLVMKGRVILYTRLGCQESREVR-----LFLYWKRLRYVEINIDVYPSRKM 465
QE V QP G+V+++ + C SR + L + L +V+I + +
Sbjct: 2 QEFVNSKIQP----GKVVVFIKPTCPYSRRAQEILSQLPIKQGLLEFVDITATNHTNEIQ 57
Query: 466 E-LEKFAGSSAVPKVFFNEILMGGLSELKALDESGKLDEKIEYL 508
+ L++ G+ VP+VF + +GG S+L +L +SG+L +++ +
Sbjct: 58 DYLQQLTGARTVPRVFIGKDSIGGSSDLVSLQQSGELLTRLKQI 101
>pdb|4F7Z|A Chain A, Conformational Dynamics Of Exchange Protein Directly
Activated By Camp
Length = 999
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 549 VVKDRFYKMRRFTNCFLGSEAVNFLSEDQYL--EREEAVEFGRKLASKLFFRHVLDENLF 606
+++DR Y ++ + C +G+E V+++ + R +AV + L HV E F
Sbjct: 209 MIRDRKYHLKTYRQCCVGTELVDWMIQQTSCVHSRTQAVGMWQVLLEDGVLNHVDQERHF 268
Query: 607 EDGNHLYRFLD 617
+D YRFLD
Sbjct: 269 QDKYLFYRFLD 279
>pdb|2BYV|E Chain E, Structure Of The Camp Responsive Exchange Factor Epac2 In
Its Auto-Inhibited State
Length = 999
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 549 VVKDRFYKMRRFTNCFLGSEAVNFLSEDQYL--EREEAVEFGRKLASKLFFRHVLDENLF 606
+++DR Y ++ + C +G+E V+++ + R +AV + L HV E F
Sbjct: 209 MIRDRKYHLKTYRQCCVGTELVDWMIQQTSCVHSRTQAVGMWQVLLEDGVLNHVDQERHF 268
Query: 607 EDGNHLYRFLD 617
+D YRFLD
Sbjct: 269 QDKYLFYRFLD 279
>pdb|1JHB|A Chain A, Human Glutaredoxin In Fully Reduced Form, Nmr, 20
Structures
Length = 106
Score = 37.7 bits (86), Expect = 0.025, Method: Composition-based stats.
Identities = 28/104 (26%), Positives = 57/104 (54%), Gaps = 10/104 (9%)
Query: 411 QEVVKEPPQPLVMKGRVILYTRLGC---QESREVRLFLYWKR--LRYVEINIDVYPSRKM 465
QE V QP G+V+++ + C + ++E+ L K+ L +V+I + +
Sbjct: 3 QEFVNCKIQP----GKVVVFIKPTCPYCRRAQEILSQLPIKQGLLEFVDITATNHTNEIQ 58
Query: 466 E-LEKFAGSSAVPKVFFNEILMGGLSELKALDESGKLDEKIEYL 508
+ L++ G+ VP+VF + +GG S+L +L +SG+L +++ +
Sbjct: 59 DYLQQLTGARTVPRVFIGKDCIGGCSDLVSLQQSGELLTRLKQI 102
>pdb|3ML6|A Chain A, A Complex Between Dishevlled2 And Clathrin Adaptor Ap-2
pdb|3ML6|B Chain B, A Complex Between Dishevlled2 And Clathrin Adaptor Ap-2
pdb|3ML6|C Chain C, A Complex Between Dishevlled2 And Clathrin Adaptor Ap-2
pdb|3ML6|D Chain D, A Complex Between Dishevlled2 And Clathrin Adaptor Ap-2
pdb|3ML6|E Chain E, A Complex Between Dishevlled2 And Clathrin Adaptor Ap-2
pdb|3ML6|F Chain F, A Complex Between Dishevlled2 And Clathrin Adaptor Ap-2
Length = 385
Score = 33.9 bits (76), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Query: 550 VKDRFYKMRRFTNCFLGSEAVNFLSE--DQYLEREEAVEFGRKLASKLFFRHVLDENLFE 607
V+DR + N FLGS+ V++L + + ER EA ++ L RH +++ F
Sbjct: 25 VRDRMWLKITIPNAFLGSDVVDWLYHHVEGFPERREARKYASGLLKAGLIRHTVNKITFS 84
Query: 608 DGNHLYRFLD 617
+ + Y F D
Sbjct: 85 EQCY-YVFGD 93
>pdb|3CTF|A Chain A, Crystal Structure Of Oxidized Grx2
pdb|3CTG|A Chain A, Crystal Structure Of Reduced Glutaredoxin 2
Length = 129
Score = 33.9 bits (76), Expect = 0.45, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 24/37 (64%)
Query: 467 LEKFAGSSAVPKVFFNEILMGGLSELKALDESGKLDE 503
LE+ +G VP V+ N +GG S+L+ L ++GKL E
Sbjct: 86 LEEISGQKTVPNVYINGKHIGGNSDLETLKKNGKLAE 122
>pdb|3D4M|A Chain A, Glutaredoxin 2 Oxidized Structure
Length = 109
Score = 33.5 bits (75), Expect = 0.55, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 24/37 (64%)
Query: 467 LEKFAGSSAVPKVFFNEILMGGLSELKALDESGKLDE 503
LE+ +G VP V+ N +GG S+L+ L ++GKL E
Sbjct: 66 LEEISGQKTVPNVYINGKHIGGNSDLETLKKNGKLAE 102
>pdb|2FLS|A Chain A, Crystal Structure Of Human Glutaredoxin 2 Complexed With
Glutathione
Length = 132
Score = 33.5 bits (75), Expect = 0.57, Method: Composition-based stats.
Identities = 25/107 (23%), Positives = 47/107 (43%), Gaps = 3/107 (2%)
Query: 398 SSDVDSENRTEQRQEVVKEPPQPLVMKGRVILYTRLGCQESREVRLFLYWKRLRY--VEI 455
SS VD Q + Q + V+++++ C + + + Y VE+
Sbjct: 8 SSGVDLGTENLYFQSMPVNQIQETISDNCVVIFSKTSCSYCTMAKKLFHDMNVNYKVVEL 67
Query: 456 NIDVYPSRKME-LEKFAGSSAVPKVFFNEILMGGLSELKALDESGKL 501
++ Y ++ + L K G VP++F N +GG ++ L + GKL
Sbjct: 68 DLLEYGNQFQDALYKMTGERTVPRIFVNGTFIGGATDTHRLHKEGKL 114
>pdb|3D5J|A Chain A, Structure Of Yeast Grx2-C30s Mutant With Glutathionyl
Mixed Disulfide
pdb|3D5J|B Chain B, Structure Of Yeast Grx2-C30s Mutant With Glutathionyl
Mixed Disulfide
Length = 112
Score = 33.1 bits (74), Expect = 0.64, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 24/37 (64%)
Query: 467 LEKFAGSSAVPKVFFNEILMGGLSELKALDESGKLDE 503
LE+ +G VP V+ N +GG S+L+ L ++GKL E
Sbjct: 69 LEEISGQKTVPNVYINGKHIGGNSDLETLKKNGKLAE 105
>pdb|2CQ9|A Chain A, Solution Structure Of Rsgi Ruh-044, An N-Terminal Domain
Of Glutaredoxin 2 From Human Cdna
Length = 130
Score = 33.1 bits (74), Expect = 0.69, Method: Composition-based stats.
Identities = 19/78 (24%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 427 VILYTRLGCQESREVRLFLYWKRLRY--VEINIDVYPSRKME-LEKFAGSSAVPKVFFNE 483
V+++++ C + + + Y VE+++ Y ++ + L K G VP++F N
Sbjct: 29 VVIFSKTSCSYCTMAKKLFHDMNVNYKVVELDLLEYGNQFQDALYKMTGERTVPRIFVNG 88
Query: 484 ILMGGLSELKALDESGKL 501
+GG ++ L + GKL
Sbjct: 89 TFIGGATDTHRLHKEGKL 106
>pdb|1KTE|A Chain A, Crystal Structure Of Thioltransferase At 2.2 Angstrom
Resolution
Length = 105
Score = 33.1 bits (74), Expect = 0.70, Method: Composition-based stats.
Identities = 24/102 (23%), Positives = 55/102 (53%), Gaps = 10/102 (9%)
Query: 411 QEVVKEPPQPLVMKGRVILYTRLGC---QESREVRLFLYWKR--LRYVEINIDVYPSRKM 465
Q V QP G+V+++ + C ++++E+ L +K L +V+I +
Sbjct: 2 QAFVNSKIQP----GKVVVFIKPTCPFCRKTQELLSQLPFKEGLLEFVDITATSDTNEIQ 57
Query: 466 E-LEKFAGSSAVPKVFFNEILMGGLSELKALDESGKLDEKIE 506
+ L++ G+ VP+VF + +GG ++L+++ + G+L +++
Sbjct: 58 DYLQQLTGARTVPRVFIGKECIGGCTDLESMHKRGELLTRLQ 99
>pdb|2HZE|A Chain A, Crystal Structures Of A Poxviral Glutaredoxin In The
Oxidized And Reduced States Show Redox-Correlated
Structural Changes
pdb|2HZF|A Chain A, Crystal Structures Of A Poxviral Glutaredoxin In The
Oxidized And Reduced States Show Redox-Correlated
Structural Changes
pdb|2HZF|B Chain B, Crystal Structures Of A Poxviral Glutaredoxin In The
Oxidized And Reduced States Show Redox-Correlated
Structural Changes
Length = 114
Score = 32.7 bits (73), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 43/95 (45%), Gaps = 6/95 (6%)
Query: 408 EQRQEVVKEPPQPLVMKGRVILYTRLGCQESREVRLFL---YWKRLRYVEINIDVY-PSR 463
++ +E Q + +V ++ + C R L +KR Y ++I + P
Sbjct: 2 HHHHQMAEEFVQQRLANNKVTIFVKYTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPEN 61
Query: 464 KME--LEKFAGSSAVPKVFFNEILMGGLSELKALD 496
++ E+ G VP++FF + +GG S+L +D
Sbjct: 62 ELRDYFEQITGGKTVPRIFFGKTSIGGYSDLLEID 96
>pdb|2HT9|A Chain A, The Structure Of Dimeric Human Glutaredoxin 2
pdb|2HT9|B Chain B, The Structure Of Dimeric Human Glutaredoxin 2
Length = 146
Score = 32.7 bits (73), Expect = 1.0, Method: Composition-based stats.
Identities = 19/78 (24%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 427 VILYTRLGCQESREVRLFLYWKRLRY--VEINIDVYPSRKME-LEKFAGSSAVPKVFFNE 483
V+++++ C + + + Y VE+++ Y ++ + L K G VP++F N
Sbjct: 51 VVIFSKTSCSYCTMAKKLFHDMNVNYKVVELDLLEYGNQFQDALYKMTGERTVPRIFVNG 110
Query: 484 ILMGGLSELKALDESGKL 501
+GG ++ L + GKL
Sbjct: 111 TFIGGATDTHRLHKEGKL 128
>pdb|2HZE|B Chain B, Crystal Structures Of A Poxviral Glutaredoxin In The
Oxidized And Reduced States Show Redox-Correlated
Structural Changes
Length = 114
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Query: 430 YTRLGCQESREVRLFLYWKRLRYVEINIDVY-PSRKME--LEKFAGSSAVPKVFFNEILM 486
YT C+ + ++ +KR Y ++I + P ++ E+ G VP++FF + +
Sbjct: 27 YTXPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGGKTVPRIFFGKTSI 86
Query: 487 GGLSELKALD 496
GG S+L +D
Sbjct: 87 GGYSDLLEID 96
>pdb|3LGC|A Chain A, Crystal Structure Of Glutaredoxin 1 From Francisella
Tularensis
pdb|3MSZ|A Chain A, Crystal Structure Of Glutaredoxin 1 From Francisella
Tularensis Complexed With Cacodylate
pdb|3MSZ|B Chain B, Crystal Structure Of Glutaredoxin 1 From Francisella
Tularensis Complexed With Cacodylate
Length = 89
Score = 32.3 bits (72), Expect = 1.2, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 7/76 (9%)
Query: 426 RVILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGS-------SAVPK 478
+V +YTR GC + + + + E ID Y R ++ S S VP+
Sbjct: 5 KVKIYTRNGCPYCVWAKQWFEENNIAFDETIIDDYAQRSKFYDEXNQSGKVIFPISTVPQ 64
Query: 479 VFFNEILMGGLSELKA 494
+F ++ +GG +ELKA
Sbjct: 65 IFIDDEHIGGFTELKA 80
>pdb|3RHB|A Chain A, Crystal Structure Of The Apo Form Of Glutaredoxin C5 From
Arabidopsis Thaliana
pdb|3RHC|A Chain A, Crystal Structure Of The Holo Form Of Glutaredoxin C5 From
Arabidopsis Thaliana
pdb|3RHC|B Chain B, Crystal Structure Of The Holo Form Of Glutaredoxin C5 From
Arabidopsis Thaliana
Length = 113
Score = 32.3 bits (72), Expect = 1.3, Method: Composition-based stats.
Identities = 21/93 (22%), Positives = 42/93 (45%), Gaps = 4/93 (4%)
Query: 414 VKEPPQPLVMKGRVILYTRLGCQESREVRLFLYWKRLRYVEINIDVY----PSRKMELEK 469
++E + V + V++Y++ C EV+ ++ + + +D P + LE+
Sbjct: 8 MEESIRKTVTENTVVIYSKTWCSYCTEVKTLFKRLGVQPLVVELDQLGPQGPQLQKVLER 67
Query: 470 FAGSSAVPKVFFNEILMGGLSELKALDESGKLD 502
G VP VF +GG ++ L+ G L+
Sbjct: 68 LTGQHTVPNVFVCGKHIGGCTDTVKLNRKGDLE 100
>pdb|3QMX|A Chain A, X-Ray Crystal Structure Of Synechocystis Sp. Pcc 6803
Glutaredoxin A
Length = 99
Score = 31.6 bits (70), Expect = 2.0, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 22/31 (70%)
Query: 472 GSSAVPKVFFNEILMGGLSELKALDESGKLD 502
G ++P++F ++ +GG ++ ALD +GKLD
Sbjct: 64 GKRSLPQIFIDDQHIGGCDDIYALDGAGKLD 94
>pdb|3FZ9|A Chain A, Crystal Structure Of Poplar Glutaredoxin S12 In Complex
With Glutathione
pdb|3FZA|A Chain A, Crystal Structure Of Poplar Glutaredoxin S12 In Complex
With Glutathione And Beta-Mercaptoethanol
Length = 112
Score = 31.2 bits (69), Expect = 2.5, Method: Composition-based stats.
Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 8/87 (9%)
Query: 422 VMKGRVILYTRLGCQESREVRLFLYWKRLRYVEINIDV------YPSRKMELEKFAGSSA 475
V + V++Y++ C S EV+ +KRL + +++ P + LE+ G
Sbjct: 15 VAENPVVVYSKTWCSYSSEVKSL--FKRLNVDPLVVELDELGAQGPQIQKVLERLTGQHT 72
Query: 476 VPKVFFNEILMGGLSELKALDESGKLD 502
VP VF +GG ++ L G+L+
Sbjct: 73 VPNVFIGGKHIGGCTDTVKLYRKGELE 99
>pdb|2Y0A|A Chain A, Structure Of Dapk1 Construct Residues 1-304
Length = 326
Score = 30.4 bits (67), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 23/36 (63%)
Query: 566 GSEAVNFLSEDQYLEREEAVEFGRKLASKLFFRHVL 601
G E +FL+E + L EEA EF +++ + +++ H L
Sbjct: 98 GGELFDFLAEKESLTEEEATEFLKQILNGVYYLHSL 133
>pdb|3GU8|A Chain A, Crystal Structure Of Dapkl93g With N6-Cyclopentyladenosine
pdb|3GUB|A Chain A, Crystal Structure Of Dapkl93g Complexed With N6-(2-
Phenylethyl)adenosine
Length = 295
Score = 30.4 bits (67), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 23/36 (63%)
Query: 566 GSEAVNFLSEDQYLEREEAVEFGRKLASKLFFRHVL 601
G E +FL+E + L EEA EF +++ + +++ H L
Sbjct: 98 GGELFDFLAEKESLTEEEATEFLKQILNGVYYLHSL 133
>pdb|3GU4|A Chain A, Crystal Structure Of Dapkq23v-Amppnp
pdb|3GU5|A Chain A, Crystal Structure Of Dapkq23v-Amppnp-Mg2+
pdb|3GU6|A Chain A, Crystal Structure Of Dapkq23v-Adp
pdb|3GU7|A Chain A, Crystal Structure Of Dapkq23v-Adp-Mg2+
Length = 295
Score = 30.4 bits (67), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 23/36 (63%)
Query: 566 GSEAVNFLSEDQYLEREEAVEFGRKLASKLFFRHVL 601
G E +FL+E + L EEA EF +++ + +++ H L
Sbjct: 98 GGELFDFLAEKESLTEEEATEFLKQILNGVYYLHSL 133
>pdb|2YAK|A Chain A, Structure Of Death-Associated Protein Kinase 1 (Dapk1) In
Complex With A Ruthenium Octasporine Ligand (Osv)
pdb|2Y4P|A Chain A, Dimeric Structure Of Dapk-1 Catalytic Domain
pdb|2Y4P|B Chain B, Dimeric Structure Of Dapk-1 Catalytic Domain
pdb|2Y4P|C Chain C, Dimeric Structure Of Dapk-1 Catalytic Domain
pdb|2Y4P|D Chain D, Dimeric Structure Of Dapk-1 Catalytic Domain
pdb|3ZXT|A Chain A, Dimeric Structure Of Dapk-1 Catalytic Domain In Complex
With Amppcp-Mg
pdb|3ZXT|B Chain B, Dimeric Structure Of Dapk-1 Catalytic Domain In Complex
With Amppcp-Mg
pdb|3ZXT|C Chain C, Dimeric Structure Of Dapk-1 Catalytic Domain In Complex
With Amppcp-Mg
pdb|3ZXT|D Chain D, Dimeric Structure Of Dapk-1 Catalytic Domain In Complex
With Amppcp-Mg
Length = 285
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 23/36 (63%)
Query: 566 GSEAVNFLSEDQYLEREEAVEFGRKLASKLFFRHVL 601
G E +FL+E + L EEA EF +++ + +++ H L
Sbjct: 98 GGELFDFLAEKESLTEEEATEFLKQILNGVYYLHSL 133
>pdb|2XZS|A Chain A, Death Associated Protein Kinase 1 Residues 1-312
pdb|2XZS|B Chain B, Death Associated Protein Kinase 1 Residues 1-312
Length = 312
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 23/36 (63%)
Query: 566 GSEAVNFLSEDQYLEREEAVEFGRKLASKLFFRHVL 601
G E +FL+E + L EEA EF +++ + +++ H L
Sbjct: 98 GGELFDFLAEKESLTEEEATEFLKQILNGVYYLHSL 133
>pdb|1IG1|A Chain A, 1.8a X-Ray Structure Of Ternary Complex Of A Catalytic
Domain Of Death-Associated Protein Kinase With Atp
Analogue And Mn.
pdb|1JKL|A Chain A, 1.6a X-Ray Structure Of Binary Complex Of A Catalytic
Domain Of Death-Associated Protein Kinase With Atp
Analogue
pdb|1JKS|A Chain A, 1.5a X-Ray Structure Of Apo Form Of A Catalytic Domain Of
Death-Associated Protein Kinase
pdb|1JKT|A Chain A, Tetragonal Crystal Form Of A Catalytic Domain Of
Death-Associated Protein Kinase
pdb|1JKT|B Chain B, Tetragonal Crystal Form Of A Catalytic Domain Of
Death-Associated Protein Kinase
pdb|1JKK|A Chain A, 2.4a X-Ray Structure Of Ternary Complex Of A Catalytic
Domain Of Death-Associated Protein Kinase With Atp
Analogue And Mg.
pdb|3F5G|A Chain A, Crystal Structure Of Death Associated Protein Kinase In
Complex With Adp And Mg2+
pdb|3EH9|A Chain A, Crystal Structure Of Death Associated Protein Kinase
Complexed With Adp
pdb|3EHA|A Chain A, Crystal Structure Of Death Associated Protein Kinase
Complexed With Amppnp
Length = 294
Score = 30.0 bits (66), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 23/36 (63%)
Query: 566 GSEAVNFLSEDQYLEREEAVEFGRKLASKLFFRHVL 601
G E +FL+E + L EEA EF +++ + +++ H L
Sbjct: 97 GGELFDFLAEKESLTEEEATEFLKQILNGVYYLHSL 132
>pdb|3F5U|A Chain A, Crystal Structure Of The Death Associated Protein Kinase
In Complex With Amppnp And Mg2+
Length = 295
Score = 30.0 bits (66), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 23/36 (63%)
Query: 566 GSEAVNFLSEDQYLEREEAVEFGRKLASKLFFRHVL 601
G E +FL+E + L EEA EF +++ + +++ H L
Sbjct: 98 GGELFDFLAEKESLTEEEATEFLKQILNGVYYLHSL 133
>pdb|2XUU|A Chain A, Crystal Structure Of A Dap-Kinase 1 Mutant
Length = 334
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 23/36 (63%)
Query: 566 GSEAVNFLSEDQYLEREEAVEFGRKLASKLFFRHVL 601
G E +FL+E + L EEA EF +++ + +++ H L
Sbjct: 98 GGELFDFLAEKESLTEEEATEFLKQILNGVYYLHSL 133
>pdb|2W4J|A Chain A, X-Ray Structure Of A Dap-Kinase 2-277
Length = 277
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 23/36 (63%)
Query: 566 GSEAVNFLSEDQYLEREEAVEFGRKLASKLFFRHVL 601
G E +FL+E + L EEA EF +++ + +++ H L
Sbjct: 98 GGELFDFLAEKESLTEEEATEFLKQILNGVYYLHSL 133
>pdb|3DFC|B Chain B, Crystal Structure Of A Glycine-Rich Loop Mutant Of The
Death Associated Protein Kinase Catalytic Domain With
Amppnp
pdb|3DGK|A Chain A, Crystal Structure Of A Glycine-Rich Loop Mutant Of The
Death Associated Protein Kinase Catalytic Domain
Length = 295
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 23/36 (63%)
Query: 566 GSEAVNFLSEDQYLEREEAVEFGRKLASKLFFRHVL 601
G E +FL+E + L EEA EF +++ + +++ H L
Sbjct: 98 GGELFDFLAEKESLTEEEATEFLKQILNGVYYLHSL 133
>pdb|1WVW|A Chain A, Crystal Structures Of Kinase Domain Of Dap Kinase In
Complex With Small Molecular Inhibitors
pdb|1WVX|A Chain A, Crystal Structures Of Kinase Domain Of Dap Kinase In
Complex With Small Molecular Inhibitors
pdb|1WVY|A Chain A, Crystal Structures Of Kinase Domain Of Dap Kinase In
Complex With Small Molecular Inhibitors
Length = 278
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 23/36 (63%)
Query: 566 GSEAVNFLSEDQYLEREEAVEFGRKLASKLFFRHVL 601
G E +FL+E + L EEA EF +++ + +++ H L
Sbjct: 98 GGELFDFLAEKESLTEEEATEFLKQILNGVYYLHSL 133
>pdb|1P4F|A Chain A, Death Associated Protein Kinase Catalytic Domain With
Bound Inhibitor Fragment
Length = 293
Score = 30.0 bits (66), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 23/36 (63%)
Query: 566 GSEAVNFLSEDQYLEREEAVEFGRKLASKLFFRHVL 601
G E +FL+E + L EEA EF +++ + +++ H L
Sbjct: 97 GGELFDFLAEKESLTEEEATEFLKQILNGVYYLHSL 132
>pdb|2X0G|A Chain A, X-ray Structure Of A Dap-kinase Calmodulin Complex
Length = 334
Score = 30.0 bits (66), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 23/36 (63%)
Query: 566 GSEAVNFLSEDQYLEREEAVEFGRKLASKLFFRHVL 601
G E +FL+E + L EEA EF +++ + +++ H L
Sbjct: 98 GGELFDFLAEKESLTEEEATEFLKQILNGVYYLHSL 133
>pdb|2W4K|A Chain A, X-Ray Structure Of A Dap-Kinase 2-302
Length = 302
Score = 30.0 bits (66), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 23/36 (63%)
Query: 566 GSEAVNFLSEDQYLEREEAVEFGRKLASKLFFRHVL 601
G E +FL+E + L EEA EF +++ + +++ H L
Sbjct: 98 GGELFDFLAEKESLTEEEATEFLKQILNGVYYLHSL 133
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.132 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,982,698
Number of Sequences: 62578
Number of extensions: 960357
Number of successful extensions: 1589
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1549
Number of HSP's gapped (non-prelim): 44
length of query: 893
length of database: 14,973,337
effective HSP length: 108
effective length of query: 785
effective length of database: 8,214,913
effective search space: 6448706705
effective search space used: 6448706705
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 56 (26.2 bits)