Query 002682
Match_columns 893
No_of_seqs 427 out of 1805
Neff 4.6
Searched_HMMs 46136
Date Fri Mar 29 04:59:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002682.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002682hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04784 DUF547: Protein of un 100.0 2.5E-36 5.4E-41 285.8 11.1 112 690-821 1-117 (117)
2 TIGR02189 GlrX-like_plant Glut 99.8 1.5E-20 3.1E-25 173.4 10.8 85 424-508 7-94 (99)
3 PRK10824 glutaredoxin-4; Provi 99.8 2.9E-20 6.3E-25 176.5 10.9 86 424-509 14-104 (115)
4 PHA03050 glutaredoxin; Provisi 99.8 3E-20 6.6E-25 174.2 10.9 85 424-508 12-102 (108)
5 cd04440 DEP_2_P-Rex DEP (Dishe 99.8 4.1E-20 8.9E-25 169.1 8.0 72 547-618 21-93 (93)
6 TIGR00365 monothiol glutaredox 99.8 1.1E-19 2.4E-24 167.0 10.1 81 425-505 12-97 (97)
7 cd04448 DEP_PIKfyve DEP (Dishe 99.8 5E-20 1.1E-24 164.9 6.2 78 537-614 2-80 (81)
8 PRK10638 glutaredoxin 3; Provi 99.8 2.8E-19 6E-24 158.4 10.2 83 423-506 1-83 (83)
9 cd04437 DEP_Epac DEP (Dishevel 99.8 4.2E-19 9.1E-24 170.6 10.1 80 545-624 12-93 (125)
10 cd04442 DEP_1_DEP6 DEP (Dishev 99.8 1.3E-19 2.7E-24 162.7 5.8 72 544-615 9-82 (82)
11 TIGR02181 GRX_bact Glutaredoxi 99.8 6.9E-19 1.5E-23 153.5 9.2 79 427-505 1-79 (79)
12 cd04439 DEP_1_P-Rex DEP (Dishe 99.8 2.7E-19 5.9E-24 160.3 5.9 71 545-615 10-81 (81)
13 cd03028 GRX_PICOT_like Glutare 99.8 1.3E-18 2.9E-23 157.1 10.1 78 425-502 8-90 (90)
14 cd04441 DEP_2_DEP6 DEP (Dishev 99.8 5.5E-19 1.2E-23 159.5 7.1 70 546-615 15-85 (85)
15 cd04443 DEP_GPR155 DEP (Dishev 99.8 5.3E-19 1.2E-23 159.1 6.8 79 537-615 4-83 (83)
16 cd04438 DEP_dishevelled DEP (D 99.8 7.7E-19 1.7E-23 158.4 6.8 79 537-616 3-83 (84)
17 cd04449 DEP_DEPDC5-like DEP (D 99.8 7.9E-19 1.7E-23 157.6 5.9 78 538-615 2-83 (83)
18 KOG1752 Glutaredoxin and relat 99.7 8.3E-18 1.8E-22 157.2 10.3 88 422-509 11-101 (104)
19 cd03027 GRX_DEP Glutaredoxin ( 99.7 1.1E-17 2.3E-22 144.5 9.4 73 425-497 1-73 (73)
20 cd03031 GRX_GRX_like Glutaredo 99.7 1.4E-17 3E-22 164.3 11.3 84 426-509 1-94 (147)
21 cd03418 GRX_GRXb_1_3_like Glut 99.7 1.8E-17 4E-22 142.3 10.0 74 426-499 1-75 (75)
22 COG0695 GrxC Glutaredoxin and 99.7 1.2E-17 2.6E-22 148.7 8.9 77 426-502 2-80 (80)
23 cd04446 DEP_DEPDC4 DEP (Dishev 99.7 5.8E-18 1.2E-22 155.7 5.7 76 539-614 3-95 (95)
24 PTZ00062 glutaredoxin; Provisi 99.7 7.8E-17 1.7E-21 166.7 10.9 83 425-507 113-200 (204)
25 cd04447 DEP_BRCC3 DEP (Disheve 99.7 2.6E-17 5.7E-22 149.9 5.0 79 537-615 3-92 (92)
26 TIGR02180 GRX_euk Glutaredoxin 99.7 1.4E-16 3E-21 138.6 8.9 79 427-505 1-84 (84)
27 cd03029 GRX_hybridPRX5 Glutare 99.7 2.2E-16 4.7E-21 135.9 9.3 70 426-496 2-71 (72)
28 cd03419 GRX_GRXh_1_2_like Glut 99.7 4E-16 8.6E-21 135.7 9.0 78 426-503 1-81 (82)
29 TIGR02190 GlrX-dom Glutaredoxi 99.6 5.8E-16 1.2E-20 136.4 10.0 72 424-496 7-78 (79)
30 PRK11200 grxA glutaredoxin 1; 99.6 5.2E-16 1.1E-20 137.9 9.7 73 426-498 2-81 (85)
31 PF00610 DEP: Domain found in 99.6 1.7E-16 3.7E-21 137.9 6.4 69 547-615 1-74 (74)
32 TIGR02183 GRXA Glutaredoxin, G 99.6 9.3E-16 2E-20 137.6 9.5 73 427-499 2-81 (86)
33 cd04444 DEP_PLEK2 DEP (Disheve 99.6 1.9E-16 4.1E-21 148.5 4.3 86 533-618 1-99 (109)
34 smart00049 DEP Domain found in 99.6 1.1E-15 2.4E-20 133.8 6.4 72 545-616 2-76 (77)
35 COG0278 Glutaredoxin-related p 99.6 2.3E-15 5E-20 138.7 8.6 84 425-508 15-104 (105)
36 cd02066 GRX_family Glutaredoxi 99.6 5E-15 1.1E-19 123.2 9.7 72 426-497 1-72 (72)
37 cd04450 DEP_RGS7-like DEP (Dis 99.6 2.8E-15 6.1E-20 136.0 6.3 76 541-616 6-83 (88)
38 cd03030 GRX_SH3BGR Glutaredoxi 99.6 1.1E-14 2.3E-19 133.5 9.6 80 427-506 2-91 (92)
39 PRK12759 bifunctional gluaredo 99.5 1.2E-14 2.7E-19 164.1 9.9 83 423-508 1-91 (410)
40 PF00462 Glutaredoxin: Glutare 99.5 1.9E-14 4.1E-19 119.9 8.3 60 427-486 1-60 (60)
41 cd04371 DEP DEP domain, named 99.5 1.5E-14 3.2E-19 127.2 6.1 77 538-614 3-81 (81)
42 cd04445 DEP_PLEK1 DEP (Disheve 99.4 9.4E-14 2E-18 127.4 5.9 84 534-617 2-97 (99)
43 PRK10329 glutaredoxin-like pro 99.4 3.1E-13 6.7E-18 120.7 8.4 65 426-491 2-66 (81)
44 TIGR02194 GlrX_NrdH Glutaredox 99.4 2.4E-13 5.3E-18 117.5 7.4 64 427-491 1-65 (72)
45 KOG0911 Glutaredoxin-related p 99.4 1.3E-12 2.7E-17 135.9 8.5 83 425-507 139-226 (227)
46 TIGR02196 GlrX_YruB Glutaredox 99.2 5.1E-11 1.1E-15 99.8 8.4 65 427-491 2-66 (74)
47 cd02976 NrdH NrdH-redoxin (Nrd 99.1 2.9E-10 6.4E-15 95.2 8.6 66 426-491 1-66 (73)
48 TIGR02200 GlrX_actino Glutared 99.0 1E-09 2.2E-14 93.8 7.8 65 426-490 1-67 (77)
49 KOG2824 Glutaredoxin-related p 99.0 9.1E-10 2E-14 117.6 8.7 85 425-509 131-225 (281)
50 PF04908 SH3BGR: SH3-binding, 99.0 2.6E-09 5.6E-14 99.6 9.1 80 427-506 3-97 (99)
51 cd02973 TRX_GRX_like Thioredox 98.8 8.6E-09 1.9E-13 87.0 6.5 58 426-487 2-64 (67)
52 KOG3571 Dishevelled 3 and rela 98.7 7.9E-09 1.7E-13 117.0 5.2 81 536-617 392-477 (626)
53 cd03041 GST_N_2GST_N GST_N fam 98.7 6.2E-08 1.3E-12 84.8 8.7 71 427-497 2-74 (77)
54 cd00570 GST_N_family Glutathio 98.6 9.6E-08 2.1E-12 77.9 6.6 69 428-496 2-70 (71)
55 cd03040 GST_N_mPGES2 GST_N fam 98.6 2.9E-07 6.4E-12 79.7 8.8 69 426-497 1-73 (77)
56 cd03055 GST_N_Omega GST_N fami 98.5 3.7E-07 8E-12 82.2 9.0 79 417-496 9-88 (89)
57 cd03037 GST_N_GRX2 GST_N famil 98.5 4.1E-07 8.9E-12 77.8 7.8 68 428-497 2-70 (71)
58 KOG3572 Uncharacterized conser 98.5 1.2E-07 2.5E-12 115.9 5.4 88 532-620 1271-1362(1701)
59 cd04436 DEP_fRgd2 DEP (Disheve 98.3 5.2E-07 1.1E-11 81.9 4.5 78 537-614 2-83 (84)
60 cd03036 ArsC_like Arsenate Red 98.3 5.8E-07 1.3E-11 84.8 5.0 50 427-476 1-50 (111)
61 cd03059 GST_N_SspA GST_N famil 98.3 2.2E-06 4.7E-11 73.0 7.3 70 427-497 1-70 (73)
62 cd03060 GST_N_Omega_like GST_N 98.3 2.5E-06 5.4E-11 73.2 7.4 66 428-494 2-68 (71)
63 cd03051 GST_N_GTT2_like GST_N 98.3 2.2E-06 4.9E-11 72.5 6.5 69 427-495 1-72 (74)
64 cd03045 GST_N_Delta_Epsilon GS 98.2 3.5E-06 7.6E-11 72.0 7.1 70 427-496 1-72 (74)
65 cd02977 ArsC_family Arsenate R 98.2 1.5E-06 3.3E-11 80.6 5.1 49 427-475 1-49 (105)
66 PF13417 GST_N_3: Glutathione 98.1 6E-06 1.3E-10 71.8 6.8 68 429-497 1-68 (75)
67 TIGR00411 redox_disulf_1 small 98.1 8.5E-06 1.8E-10 70.6 7.7 55 426-484 2-62 (82)
68 cd03056 GST_N_4 GST_N family, 98.1 9.1E-06 2E-10 68.9 7.2 69 427-495 1-71 (73)
69 PRK01655 spxA transcriptional 98.0 6.6E-06 1.4E-10 80.1 5.8 46 427-472 2-47 (131)
70 PF05768 DUF836: Glutaredoxin- 98.0 2.3E-05 4.9E-10 70.0 8.7 53 426-483 1-57 (81)
71 TIGR00412 redox_disulf_2 small 98.0 1.2E-05 2.6E-10 70.8 6.6 54 427-486 3-60 (76)
72 cd03026 AhpF_NTD_C TRX-GRX-lik 97.9 2E-05 4.3E-10 71.9 6.2 58 426-487 15-77 (89)
73 TIGR01617 arsC_related transcr 97.9 1.9E-05 4.1E-10 75.0 5.9 46 427-472 1-46 (117)
74 cd03032 ArsC_Spx Arsenate Redu 97.9 2E-05 4.3E-10 74.7 6.0 46 427-472 2-47 (115)
75 PRK12559 transcriptional regul 97.8 2.9E-05 6.2E-10 75.9 5.7 46 427-472 2-47 (131)
76 PRK13344 spxA transcriptional 97.8 3.7E-05 8E-10 75.2 5.8 45 427-471 2-46 (132)
77 PHA02125 thioredoxin-like prot 97.7 8.6E-05 1.9E-09 65.0 7.2 55 427-486 2-56 (75)
78 cd03035 ArsC_Yffb Arsenate Red 97.7 4E-05 8.7E-10 72.1 5.1 46 427-472 1-46 (105)
79 cd03054 GST_N_Metaxin GST_N fa 97.7 0.00012 2.5E-09 63.0 7.3 57 433-497 14-70 (72)
80 cd03052 GST_N_GDAP1 GST_N fami 97.7 0.00011 2.3E-09 64.3 6.9 70 427-496 1-72 (73)
81 cd03053 GST_N_Phi GST_N family 97.7 0.00016 3.6E-09 62.2 7.8 71 427-497 2-74 (76)
82 cd03058 GST_N_Tau GST_N family 97.7 0.00015 3.3E-09 62.4 7.3 70 427-497 1-71 (74)
83 cd04435 DEP_fRom2 DEP (Disheve 97.6 6E-05 1.3E-09 67.9 4.6 79 537-615 2-82 (82)
84 cd03033 ArsC_15kD Arsenate Red 97.6 9.9E-05 2.1E-09 70.5 5.5 46 427-472 2-47 (113)
85 cd03049 GST_N_3 GST_N family, 97.5 0.00027 5.8E-09 60.7 6.7 68 428-496 2-72 (73)
86 cd03042 GST_N_Zeta GST_N famil 97.5 0.00033 7.1E-09 59.5 6.6 69 428-496 2-72 (73)
87 KOG4023 Uncharacterized conser 97.4 0.00021 4.5E-09 66.9 5.5 81 426-506 3-97 (108)
88 cd02975 PfPDO_like_N Pyrococcu 97.4 0.00017 3.8E-09 68.0 5.0 52 426-481 24-81 (113)
89 PF13192 Thioredoxin_3: Thiore 97.4 0.00045 9.7E-09 60.8 6.7 54 426-485 2-59 (76)
90 cd03076 GST_N_Pi GST_N family, 97.4 0.00063 1.4E-08 59.0 7.4 70 427-497 2-71 (73)
91 cd03039 GST_N_Sigma_like GST_N 97.4 0.00048 1E-08 59.0 6.4 70 427-496 1-70 (72)
92 cd03080 GST_N_Metaxin_like GST 97.3 0.00079 1.7E-08 58.6 7.3 63 427-497 2-71 (75)
93 cd03048 GST_N_Ure2p_like GST_N 97.3 0.00087 1.9E-08 58.7 7.3 70 427-497 2-76 (81)
94 PRK10387 glutaredoxin 2; Provi 97.3 0.0007 1.5E-08 68.8 7.6 68 427-496 1-69 (210)
95 TIGR02182 GRXB Glutaredoxin, G 97.3 0.00061 1.3E-08 70.4 7.3 68 428-497 1-69 (209)
96 COG1393 ArsC Arsenate reductas 97.2 0.00043 9.4E-09 66.7 5.5 45 427-471 3-47 (117)
97 cd03061 GST_N_CLIC GST_N famil 97.2 0.00087 1.9E-08 62.1 7.1 64 433-497 20-83 (91)
98 PRK10026 arsenate reductase; P 97.2 0.00051 1.1E-08 68.3 5.9 47 426-472 3-49 (141)
99 cd03038 GST_N_etherase_LigE GS 97.1 0.00067 1.4E-08 60.1 5.1 64 433-497 14-80 (84)
100 cd01659 TRX_superfamily Thiore 97.1 0.0015 3.2E-08 50.5 6.3 57 427-484 1-62 (69)
101 TIGR01295 PedC_BrcD bacterioci 97.1 0.002 4.4E-08 62.0 8.2 63 427-489 27-106 (122)
102 cd03050 GST_N_Theta GST_N fami 97.1 0.002 4.3E-08 55.8 7.3 70 427-496 1-72 (76)
103 cd03044 GST_N_EF1Bgamma GST_N 97.0 0.0018 3.9E-08 56.3 6.8 69 428-496 2-72 (75)
104 TIGR02187 GlrX_arch Glutaredox 97.0 0.0013 2.8E-08 68.6 6.9 56 426-485 136-196 (215)
105 PRK10853 putative reductase; P 97.0 0.00047 1E-08 66.4 3.3 45 427-471 2-46 (118)
106 PRK09481 sspA stringent starva 97.0 0.0016 3.6E-08 66.9 7.4 59 427-486 11-69 (211)
107 TIGR00014 arsC arsenate reduct 97.0 0.00092 2E-08 63.7 4.9 46 427-472 1-46 (114)
108 cd03034 ArsC_ArsC Arsenate Red 97.0 0.0011 2.4E-08 62.9 5.2 45 427-471 1-45 (112)
109 TIGR01616 nitro_assoc nitrogen 97.0 0.0012 2.7E-08 64.3 5.6 47 426-472 2-48 (126)
110 PF13409 GST_N_2: Glutathione 96.9 0.0011 2.4E-08 57.3 4.5 65 434-498 1-69 (70)
111 cd02953 DsbDgamma DsbD gamma f 96.9 0.0023 5.1E-08 58.4 6.9 55 427-481 15-78 (104)
112 cd02947 TRX_family TRX family; 96.9 0.0036 7.7E-08 53.4 7.4 57 427-487 14-77 (93)
113 KOG3029 Glutathione S-transfer 96.8 0.0034 7.3E-08 68.4 7.8 64 426-492 90-153 (370)
114 cd03057 GST_N_Beta GST_N famil 96.8 0.0038 8.2E-08 54.1 6.6 68 428-496 2-72 (77)
115 cd03047 GST_N_2 GST_N family, 96.8 0.0048 1E-07 53.1 7.1 68 428-495 2-71 (73)
116 cd02949 TRX_NTR TRX domain, no 96.6 0.0052 1.1E-07 55.7 6.7 57 427-487 17-81 (97)
117 PHA02278 thioredoxin-like prot 96.5 0.0083 1.8E-07 56.4 7.2 60 427-486 18-85 (103)
118 cd03046 GST_N_GTT1_like GST_N 96.4 0.0085 1.8E-07 51.3 6.4 69 428-497 2-72 (76)
119 cd02950 TxlA TRX-like protein 96.3 0.011 2.5E-07 58.1 7.6 86 427-517 24-118 (142)
120 PRK15317 alkyl hydroperoxide r 96.3 0.0054 1.2E-07 71.9 6.2 58 426-487 119-181 (517)
121 TIGR03140 AhpF alkyl hydropero 96.3 0.0058 1.3E-07 71.7 6.2 58 426-487 120-182 (515)
122 PRK15113 glutathione S-transfe 96.3 0.012 2.5E-07 60.9 7.7 61 426-486 5-69 (214)
123 TIGR03143 AhpF_homolog putativ 96.3 0.0073 1.6E-07 71.6 6.8 56 426-485 479-539 (555)
124 TIGR00862 O-ClC intracellular 96.2 0.013 2.8E-07 62.8 8.0 60 433-493 17-76 (236)
125 cd02954 DIM1 Dim1 family; Dim1 96.2 0.013 2.7E-07 56.6 7.0 57 427-487 18-82 (114)
126 PLN02473 glutathione S-transfe 96.2 0.013 2.7E-07 60.1 7.2 69 427-495 3-73 (214)
127 COG4545 Glutaredoxin-related p 96.2 0.012 2.6E-07 53.1 6.0 66 427-493 4-82 (85)
128 KOG0406 Glutathione S-transfer 96.1 0.016 3.5E-07 62.1 7.9 66 425-491 8-74 (231)
129 cd03043 GST_N_1 GST_N family, 96.1 0.02 4.4E-07 49.8 6.9 64 432-495 7-71 (73)
130 cd02957 Phd_like Phosducin (Ph 96.0 0.025 5.4E-07 53.0 7.9 64 427-495 28-98 (113)
131 cd02951 SoxW SoxW family; SoxW 96.0 0.021 4.5E-07 54.0 7.4 56 426-481 17-90 (125)
132 PTZ00051 thioredoxin; Provisio 95.9 0.025 5.5E-07 50.7 7.1 58 427-488 22-86 (98)
133 PF13098 Thioredoxin_2: Thiore 95.9 0.025 5.4E-07 51.9 7.2 66 426-491 8-104 (112)
134 cd02989 Phd_like_TxnDC9 Phosdu 95.8 0.025 5.4E-07 53.6 7.1 59 427-489 26-91 (113)
135 cd02985 TRX_CDSP32 TRX family, 95.8 0.038 8.1E-07 51.1 8.0 60 427-487 19-85 (103)
136 PF03960 ArsC: ArsC family; I 95.8 0.015 3.3E-07 54.7 5.5 42 430-471 1-42 (110)
137 TIGR01068 thioredoxin thioredo 95.8 0.046 9.9E-07 48.3 8.0 57 427-487 18-82 (101)
138 PRK09381 trxA thioredoxin; Pro 95.6 0.043 9.3E-07 50.5 7.5 59 427-489 25-91 (109)
139 cd02984 TRX_PICOT TRX domain, 95.6 0.062 1.4E-06 47.9 8.2 56 427-486 18-81 (97)
140 PF00085 Thioredoxin: Thioredo 95.5 0.062 1.3E-06 47.8 7.8 58 426-487 20-85 (103)
141 cd02959 ERp19 Endoplasmic reti 95.4 0.021 4.6E-07 54.5 4.7 58 427-487 23-91 (117)
142 TIGR02187 GlrX_arch Glutaredox 95.2 0.041 8.9E-07 57.5 6.8 59 426-486 22-90 (215)
143 TIGR01262 maiA maleylacetoacet 95.2 0.027 5.9E-07 57.3 5.3 63 428-490 1-66 (210)
144 PLN02817 glutathione dehydroge 95.2 0.035 7.5E-07 60.4 6.2 58 433-491 71-128 (265)
145 PLN02378 glutathione S-transfe 95.2 0.043 9.3E-07 56.9 6.6 56 433-489 18-73 (213)
146 KOG0910 Thioredoxin-like prote 95.1 0.026 5.6E-07 56.9 4.6 56 427-486 65-128 (150)
147 cd02961 PDI_a_family Protein D 95.1 0.067 1.4E-06 46.7 6.7 52 426-481 18-77 (101)
148 PLN02395 glutathione S-transfe 95.1 0.057 1.2E-06 55.2 7.3 64 427-491 3-68 (215)
149 cd02994 PDI_a_TMX PDIa family, 95.0 0.066 1.4E-06 48.5 6.6 52 426-481 19-77 (101)
150 cd02996 PDI_a_ERp44 PDIa famil 95.0 0.068 1.5E-06 49.3 6.7 54 427-484 22-89 (108)
151 cd02948 TRX_NDPK TRX domain, T 94.9 0.077 1.7E-06 48.8 6.7 55 427-486 21-84 (102)
152 cd03003 PDI_a_ERdj5_N PDIa fam 94.8 0.076 1.7E-06 48.2 6.5 56 426-485 21-84 (101)
153 COG0625 Gst Glutathione S-tran 94.7 0.06 1.3E-06 55.2 6.1 57 428-484 2-59 (211)
154 PRK10877 protein disulfide iso 94.6 0.11 2.5E-06 55.4 8.3 67 425-491 109-219 (232)
155 cd02963 TRX_DnaJ TRX domain, D 94.5 0.1 2.2E-06 48.9 6.7 57 426-486 27-92 (111)
156 cd02956 ybbN ybbN protein fami 94.5 0.11 2.4E-06 46.5 6.7 56 427-486 16-79 (96)
157 cd03004 PDI_a_ERdj5_C PDIa fam 94.5 0.12 2.6E-06 47.0 6.9 52 426-481 22-79 (104)
158 TIGR01126 pdi_dom protein disu 94.4 0.097 2.1E-06 46.6 6.0 52 426-481 16-75 (102)
159 cd02965 HyaE HyaE family; HyaE 94.3 0.099 2.2E-06 50.3 6.1 60 426-489 30-99 (111)
160 PRK10357 putative glutathione 94.2 0.088 1.9E-06 53.5 6.1 58 428-486 2-60 (202)
161 PTZ00443 Thioredoxin domain-co 94.2 0.15 3.3E-06 54.4 8.0 56 427-486 56-119 (224)
162 PRK10996 thioredoxin 2; Provis 94.2 0.17 3.7E-06 49.6 7.7 56 427-486 56-119 (139)
163 cd02987 Phd_like_Phd Phosducin 94.2 0.12 2.6E-06 53.0 6.8 58 427-489 87-151 (175)
164 cd02993 PDI_a_APS_reductase PD 94.2 0.13 2.8E-06 47.9 6.5 54 426-481 24-84 (109)
165 cd03077 GST_N_Alpha GST_N fami 94.1 0.25 5.5E-06 43.6 8.0 69 427-496 2-72 (79)
166 cd02999 PDI_a_ERp44_like PDIa 94.1 0.15 3.2E-06 47.2 6.7 51 427-481 22-78 (100)
167 cd02998 PDI_a_ERp38 PDIa famil 93.9 0.13 2.8E-06 46.0 5.9 52 426-481 21-81 (105)
168 cd03001 PDI_a_P5 PDIa family, 93.9 0.19 4.1E-06 45.1 6.9 51 427-481 22-78 (103)
169 PRK13972 GSH-dependent disulfi 93.9 0.16 3.6E-06 52.3 7.4 54 427-481 2-57 (215)
170 cd03005 PDI_a_ERp46 PDIa famil 93.8 0.14 3.1E-06 45.8 5.9 56 426-485 19-85 (102)
171 cd02962 TMX2 TMX2 family; comp 93.7 0.21 4.6E-06 50.3 7.5 58 427-488 51-123 (152)
172 cd03002 PDI_a_MPD1_like PDI fa 93.6 0.14 3.1E-06 46.6 5.7 54 426-481 21-80 (109)
173 PRK13728 conjugal transfer pro 93.6 0.29 6.2E-06 51.0 8.5 58 427-484 73-148 (181)
174 cd03065 PDI_b_Calsequestrin_N 93.6 0.17 3.7E-06 49.1 6.4 57 427-487 31-101 (120)
175 cd03006 PDI_a_EFP1_N PDIa fami 93.4 0.18 3.8E-06 48.3 6.1 55 427-484 33-95 (113)
176 cd02997 PDI_a_PDIR PDIa family 93.3 0.19 4.1E-06 45.1 5.9 58 427-486 21-88 (104)
177 cd02955 SSP411 TRX domain, SSP 93.3 0.2 4.3E-06 48.8 6.3 64 427-490 19-98 (124)
178 PF14595 Thioredoxin_9: Thiore 93.3 0.04 8.7E-07 53.9 1.5 55 426-481 44-103 (129)
179 cd02972 DsbA_family DsbA famil 93.0 0.27 5.9E-06 42.5 6.3 61 427-487 1-96 (98)
180 PF06764 DUF1223: Protein of u 93.0 0.4 8.7E-06 50.7 8.5 77 427-510 2-99 (202)
181 cd03000 PDI_a_TMX3 PDIa family 92.7 0.27 5.8E-06 45.1 6.1 51 427-481 19-78 (104)
182 COG2999 GrxB Glutaredoxin 2 [P 92.7 0.13 2.8E-06 53.4 4.3 66 429-496 3-69 (215)
183 cd03020 DsbA_DsbC_DsbG DsbA fa 92.7 0.41 9E-06 49.2 8.1 32 425-456 79-112 (197)
184 PTZ00057 glutathione s-transfe 92.6 0.36 7.8E-06 49.7 7.5 73 423-495 1-78 (205)
185 cd02952 TRP14_like Human TRX-r 92.3 0.25 5.4E-06 48.0 5.5 55 427-481 25-96 (119)
186 PF02798 GST_N: Glutathione S- 92.2 0.49 1.1E-05 41.6 6.8 67 427-495 3-73 (76)
187 PLN00410 U5 snRNP protein, DIM 91.9 0.32 7E-06 48.7 5.9 54 427-484 27-89 (142)
188 COG3118 Thioredoxin domain-con 91.9 0.29 6.2E-06 54.4 6.0 61 427-491 47-115 (304)
189 cd02986 DLP Dim1 family, Dim1- 91.3 0.51 1.1E-05 45.9 6.3 56 427-486 18-81 (114)
190 cd02995 PDI_a_PDI_a'_C PDIa fa 91.3 0.43 9.3E-06 42.7 5.5 50 427-481 22-79 (104)
191 cd03078 GST_N_Metaxin1_like GS 91.2 0.67 1.5E-05 40.9 6.5 58 433-498 14-71 (73)
192 KOG0907 Thioredoxin [Posttrans 91.1 0.45 9.8E-06 45.3 5.7 55 427-485 25-86 (106)
193 PRK11752 putative S-transferas 90.8 0.59 1.3E-05 50.5 7.0 57 426-483 44-108 (264)
194 cd02964 TryX_like_family Trypa 90.7 1 2.2E-05 43.2 7.8 60 427-486 21-113 (132)
195 cd03079 GST_N_Metaxin2 GST_N f 90.5 0.46 1E-05 42.6 4.9 58 433-497 15-72 (74)
196 cd02992 PDI_a_QSOX PDIa family 90.3 0.57 1.2E-05 44.4 5.7 54 426-481 22-84 (114)
197 cd02988 Phd_like_VIAF Phosduci 90.3 0.51 1.1E-05 49.2 5.8 54 427-487 106-166 (192)
198 PRK10542 glutathionine S-trans 89.8 0.67 1.5E-05 46.9 6.0 62 428-490 2-67 (201)
199 cd03009 TryX_like_TryX_NRX Try 89.6 1.2 2.7E-05 42.2 7.3 60 427-486 22-113 (131)
200 TIGR02740 TraF-like TraF-like 89.5 0.71 1.5E-05 50.6 6.4 56 426-481 169-235 (271)
201 PF13899 Thioredoxin_7: Thiore 89.5 0.62 1.3E-05 41.3 4.9 52 427-481 21-79 (82)
202 KOG1422 Intracellular Cl- chan 89.4 0.77 1.7E-05 48.9 6.2 58 434-494 20-79 (221)
203 cd03023 DsbA_Com1_like DsbA fa 89.2 1.6 3.4E-05 41.6 7.8 22 426-447 8-29 (154)
204 cd03075 GST_N_Mu GST_N family, 87.3 2.2 4.9E-05 38.1 7.0 69 428-496 2-78 (82)
205 PF06953 ArsD: Arsenical resis 87.0 2.5 5.4E-05 41.7 7.7 71 423-494 1-93 (123)
206 PF13728 TraF: F plasmid trans 86.9 1.7 3.6E-05 46.2 6.9 56 426-481 123-189 (215)
207 TIGR02661 MauD methylamine deh 86.8 1.9 4.2E-05 44.3 7.2 32 427-458 78-113 (189)
208 COG5494 Predicted thioredoxin/ 86.4 0.99 2.1E-05 48.1 4.8 62 421-488 9-72 (265)
209 PTZ00062 glutaredoxin; Provisi 86.4 1.3 2.8E-05 46.9 5.7 52 427-490 21-79 (204)
210 TIGR00424 APS_reduc 5'-adenyly 86.1 1.7 3.6E-05 51.4 7.0 53 427-481 375-434 (463)
211 PRK00293 dipZ thiol:disulfide 85.8 1.8 4E-05 52.1 7.4 59 427-485 478-547 (571)
212 cd02982 PDI_b'_family Protein 85.2 1.9 4.2E-05 38.8 5.6 52 426-481 15-74 (103)
213 KOG0867 Glutathione S-transfer 84.8 2.2 4.8E-05 45.3 6.6 63 427-489 3-67 (226)
214 TIGR02738 TrbB type-F conjugat 84.7 2.9 6.3E-05 42.2 7.1 56 426-481 53-124 (153)
215 COG3019 Predicted metal-bindin 84.7 2.5 5.5E-05 42.6 6.5 60 426-489 27-90 (149)
216 PF07315 DUF1462: Protein of u 84.7 5.3 0.00011 37.6 8.1 68 428-495 1-88 (93)
217 PTZ00102 disulphide isomerase; 84.1 2.2 4.7E-05 49.1 6.7 51 427-481 53-112 (477)
218 TIGR01130 ER_PDI_fam protein d 83.6 2.5 5.4E-05 47.9 6.9 55 427-485 22-87 (462)
219 KOG4244 Failed axon connection 83.6 1.3 2.7E-05 48.8 4.2 60 426-493 45-111 (281)
220 PLN02309 5'-adenylylsulfate re 83.5 2 4.4E-05 50.6 6.2 53 426-481 368-428 (457)
221 cd02966 TlpA_like_family TlpA- 82.4 4.9 0.00011 35.4 6.9 35 426-460 22-63 (116)
222 cd03010 TlpA_like_DsbE TlpA-li 81.1 6.8 0.00015 36.9 7.7 34 427-460 29-66 (127)
223 COG2143 Thioredoxin-related pr 80.9 4.4 9.5E-05 41.8 6.6 55 427-481 46-121 (182)
224 PRK03147 thiol-disulfide oxido 80.5 4.9 0.00011 39.6 6.9 60 427-486 65-152 (173)
225 cd03011 TlpA_like_ScsD_MtbDsbE 79.7 1.9 4E-05 40.1 3.4 22 426-447 23-44 (123)
226 KOG1695 Glutathione S-transfer 79.6 4.9 0.00011 42.8 6.8 69 426-495 3-71 (206)
227 KOG0868 Glutathione S-transfer 78.7 2.8 6.1E-05 44.0 4.6 61 426-488 5-70 (217)
228 TIGR00385 dsbE periplasmic pro 77.4 9.1 0.0002 38.6 7.8 34 427-460 67-103 (173)
229 cd02967 mauD Methylamine utili 76.5 9.4 0.0002 35.0 7.0 53 427-480 25-83 (114)
230 PRK15412 thiol:disulfide inter 76.5 8.7 0.00019 39.3 7.4 36 427-462 72-110 (185)
231 TIGR01130 ER_PDI_fam protein d 75.9 5.6 0.00012 45.1 6.5 49 427-481 368-425 (462)
232 cd02958 UAS UAS family; UAS is 75.7 4.3 9.4E-05 38.0 4.6 54 427-481 21-82 (114)
233 TIGR02739 TraF type-F conjugat 75.1 6 0.00013 43.5 6.1 56 426-481 153-219 (256)
234 COG5429 Uncharacterized secret 75.1 3 6.5E-05 45.3 3.7 65 425-489 43-128 (261)
235 PTZ00102 disulphide isomerase; 74.3 4.8 0.0001 46.3 5.5 51 427-481 379-437 (477)
236 COG0526 TrxA Thiol-disulfide i 73.0 9 0.00019 32.8 5.7 48 431-480 40-94 (127)
237 COG5422 ROM1 RhoGEF, Guanine n 72.9 0.39 8.4E-06 59.3 -3.9 77 534-610 275-352 (1175)
238 cd03008 TryX_like_RdCVF Trypar 72.8 8.8 0.00019 38.7 6.2 36 427-462 29-78 (146)
239 PHA03075 glutaredoxin-like pro 72.3 4.3 9.3E-05 39.8 3.7 35 423-457 1-35 (123)
240 PF08534 Redoxin: Redoxin; In 71.3 17 0.00036 35.0 7.6 43 427-469 32-82 (146)
241 PRK11657 dsbG disulfide isomer 70.5 4.7 0.0001 43.7 4.0 33 425-457 119-155 (251)
242 PF10568 Tom37: Outer mitochon 69.2 14 0.00031 32.9 6.1 54 435-496 14-71 (72)
243 COG4837 Uncharacterized protei 68.4 27 0.00059 33.3 7.8 71 426-496 6-96 (106)
244 PF13905 Thioredoxin_8: Thiore 67.2 11 0.00023 33.6 4.9 34 427-460 5-46 (95)
245 cd03007 PDI_a_ERp29_N PDIa fam 66.5 21 0.00045 34.9 7.1 57 427-483 22-90 (116)
246 KOG0190 Protein disulfide isom 66.4 14 0.00031 44.1 7.1 80 427-514 46-134 (493)
247 KOG4420 Uncharacterized conser 66.0 4.6 0.0001 44.5 2.7 72 427-498 27-100 (325)
248 PF06110 DUF953: Eukaryotic pr 65.2 5 0.00011 39.3 2.6 50 432-481 35-95 (119)
249 PRK13703 conjugal pilus assemb 65.0 13 0.00029 40.6 6.1 56 426-481 146-212 (248)
250 cd02970 PRX_like2 Peroxiredoxi 62.3 22 0.00047 33.8 6.4 52 427-480 27-86 (149)
251 cd02969 PRX_like1 Peroxiredoxi 59.1 37 0.00081 33.8 7.7 32 427-458 29-67 (171)
252 PF00578 AhpC-TSA: AhpC/TSA fa 56.1 36 0.00078 31.4 6.6 53 427-481 29-89 (124)
253 smart00594 UAS UAS domain. 55.0 41 0.0009 32.2 6.9 51 427-482 31-93 (122)
254 PTZ00056 glutathione peroxidas 53.5 33 0.00072 35.9 6.5 31 427-457 43-80 (199)
255 PRK14018 trifunctional thiored 53.3 29 0.00063 41.9 6.7 21 427-447 60-80 (521)
256 cd03017 PRX_BCP Peroxiredoxin 49.8 44 0.00095 31.7 6.2 46 432-479 33-85 (140)
257 KOG0912 Thiol-disulfide isomer 49.5 87 0.0019 35.8 9.1 34 563-596 189-228 (375)
258 cd03019 DsbA_DsbA DsbA family, 49.2 22 0.00047 35.1 4.2 24 424-447 16-39 (178)
259 KOG3425 Uncharacterized conser 48.9 11 0.00023 37.4 1.9 50 432-481 42-101 (128)
260 COG1651 DsbG Protein-disulfide 48.7 23 0.0005 37.4 4.5 23 470-492 210-232 (244)
261 cd03018 PRX_AhpE_like Peroxire 48.3 38 0.00081 32.5 5.5 45 432-478 38-89 (149)
262 COG3634 AhpF Alkyl hydroperoxi 47.5 19 0.00041 41.7 3.8 61 426-488 119-182 (520)
263 PLN02412 probable glutathione 47.5 48 0.001 33.5 6.4 53 427-480 33-100 (167)
264 TIGR00869 sec62 protein transl 47.0 18 0.00038 39.4 3.3 41 562-602 20-74 (232)
265 PTZ00256 glutathione peroxidas 47.0 46 0.00099 34.1 6.2 52 428-480 46-112 (183)
266 cd03012 TlpA_like_DipZ_like Tl 46.3 66 0.0014 30.4 6.8 20 427-446 27-46 (126)
267 cd02971 PRX_family Peroxiredox 45.0 54 0.0012 30.9 6.0 47 432-479 32-85 (140)
268 PF11009 DUF2847: Protein of u 44.5 97 0.0021 30.0 7.5 63 425-487 20-92 (105)
269 cd02960 AGR Anterior Gradient 44.2 19 0.00042 35.8 2.8 19 427-445 27-45 (130)
270 PF01323 DSBA: DSBA-like thior 44.2 39 0.00084 33.8 5.1 37 426-462 1-42 (193)
271 PF13462 Thioredoxin_4: Thiore 43.4 30 0.00064 33.5 4.0 24 470-493 131-154 (162)
272 cd00340 GSH_Peroxidase Glutath 42.1 55 0.0012 32.2 5.7 31 427-458 26-63 (152)
273 TIGR02540 gpx7 putative glutat 41.0 69 0.0015 31.5 6.2 31 427-457 26-63 (153)
274 PF10865 DUF2703: Domain of un 40.6 49 0.0011 32.7 5.0 46 434-486 14-72 (120)
275 PRK09437 bcp thioredoxin-depen 40.3 63 0.0014 31.5 5.8 46 432-479 40-92 (154)
276 PRK11509 hydrogenase-1 operon 40.1 62 0.0013 32.4 5.7 69 434-509 47-124 (132)
277 PF04134 DUF393: Protein of un 38.1 95 0.0021 28.9 6.4 78 430-509 2-88 (114)
278 cd03022 DsbA_HCCA_Iso DsbA fam 37.9 35 0.00077 34.1 3.7 56 440-495 125-187 (192)
279 PF13462 Thioredoxin_4: Thiore 37.2 34 0.00073 33.1 3.3 35 426-460 15-57 (162)
280 KOG0908 Thioredoxin-like prote 37.2 54 0.0012 36.5 5.0 75 427-509 25-106 (288)
281 KOG2501 Thioredoxin, nucleored 37.1 89 0.0019 32.4 6.3 57 430-486 40-129 (157)
282 TIGR03143 AhpF_homolog putativ 37.0 71 0.0015 38.5 6.6 55 423-481 364-425 (555)
283 PLN02399 phospholipid hydroper 36.5 72 0.0016 34.7 6.0 33 426-458 102-141 (236)
284 cd03015 PRX_Typ2cys Peroxiredo 35.0 91 0.002 31.3 6.1 33 427-459 32-73 (173)
285 cd05295 MDH_like Malate dehydr 34.3 69 0.0015 38.2 5.8 67 432-498 1-83 (452)
286 PLN02919 haloacid dehalogenase 34.1 1.3E+02 0.0029 39.4 8.7 21 427-447 424-444 (1057)
287 COG2761 FrnE Predicted dithiol 33.9 32 0.0007 37.3 2.8 26 422-447 3-28 (225)
288 KOG4277 Uncharacterized conser 33.4 25 0.00055 39.7 1.9 60 427-486 47-112 (468)
289 PF01323 DSBA: DSBA-like thior 32.1 28 0.0006 34.8 1.9 55 441-495 126-188 (193)
290 cd02968 SCO SCO (an acronym fo 30.6 1.6E+02 0.0034 28.0 6.6 33 427-459 26-69 (142)
291 PF03190 Thioredox_DsbH: Prote 29.3 1.7E+02 0.0038 30.4 7.0 61 427-488 41-118 (163)
292 PF09413 DUF2007: Domain of un 28.6 65 0.0014 27.5 3.3 53 427-484 1-53 (67)
293 KOG0191 Thioredoxin/protein di 28.1 58 0.0012 37.2 3.7 53 426-482 50-108 (383)
294 COG4232 Thiol:disulfide interc 25.9 85 0.0018 38.4 4.7 52 430-481 481-540 (569)
295 cd03014 PRX_Atyp2cys Peroxired 24.7 1.8E+02 0.0039 27.8 6.0 51 427-478 29-86 (143)
296 KOG0190 Protein disulfide isom 23.9 36 0.00079 40.8 1.2 80 426-513 387-474 (493)
297 TIGR01626 ytfJ_HI0045 conserve 22.9 2.1E+02 0.0045 30.2 6.4 36 426-461 62-106 (184)
298 cd03025 DsbA_FrnE_like DsbA fa 22.3 1.1E+02 0.0024 30.6 4.2 22 426-447 2-23 (193)
299 PRK10954 periplasmic protein d 21.9 92 0.002 32.5 3.6 20 424-443 38-57 (207)
300 PRK10954 periplasmic protein d 21.8 87 0.0019 32.7 3.4 53 439-491 124-183 (207)
301 KOG0191 Thioredoxin/protein di 20.7 1.4E+02 0.003 34.1 5.0 54 426-481 165-224 (383)
302 cd03021 DsbA_GSTK DsbA family, 20.2 1.3E+02 0.0029 31.2 4.3 36 426-461 2-41 (209)
No 1
>PF04784 DUF547: Protein of unknown function, DUF547; InterPro: IPR006869 This is a conserved region found in uncharacterised proteins from Caenorhabditis elegans and Arabidopsis thaliana (Mouse-ear cress).
Probab=100.00 E-value=2.5e-36 Score=285.85 Aligned_cols=112 Identities=52% Similarity=0.979 Sum_probs=105.2
Q ss_pred ccCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCCChhhh---hcccCceEEEEcCEEecHHHHHHhcccCCCCCCCCCC
Q 002682 690 RVELQDMPREEMLAFFINLYNMMAIHAILVCGHPIGALER---RKFFGDFKYVIGGYTYSLSAIQNGILRGNQRPPYNLM 766 (893)
Q Consensus 690 ~VdL~~Ls~eEkLAFwINLYNaLvIHaiL~~G~P~s~l~r---~~ff~~~~Y~IGG~~~SL~DIEhgILR~N~~~p~~l~ 766 (893)
+||++.|+++||+|||||+||+|+||+++..|+|.+..++ ..||++..|.|||+.+||+||||+|||+++++
T Consensus 1 ~v~~~~l~~~e~lAFwIN~yNal~~h~~l~~~~~~s~~~~~~~~~~~~~~~y~Igg~~~SL~dIe~~ILR~~~~~----- 75 (117)
T PF04784_consen 1 RVDLSSLSREEKLAFWINLYNALVLHAILENGPPKSILDRKLGGSFFSKVRYNIGGQRFSLDDIEHGILRGNRPP----- 75 (117)
T ss_pred CcChHHCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHhhcccccccceEEEECCEEecHHHHHHhhccCCCCC-----
Confidence 5789999999999999999999999999999988787776 69999999999999999999999999997542
Q ss_pred CCCCCcccccccCCCCCCceeEEeeccCCCCCCCcc--ccCcccHHHHHHHHHHHHH
Q 002682 767 KPFGAKDKRSQVALPYPEPSTHFALVCGTRSSPALR--CYSPGNIDKELMKAARSFL 821 (893)
Q Consensus 767 kpF~~~D~R~~~aL~~~DPRIHFAL~CGS~ScPpLr--~Ytpe~LdeQL~~Aar~FL 821 (893)
++||||||||+||+.|||+|| +|+|++|++||+.||++||
T Consensus 76 ---------------~~DprihFaL~cgs~s~P~lr~~~yt~~~l~~qL~~a~~~fi 117 (117)
T PF04784_consen 76 ---------------WPDPRIHFALNCGSKSCPPLRREAYTAENLDEQLEEAAREFI 117 (117)
T ss_pred ---------------CCCCceeeeeecCCCCChhhhhhccCHHHHHHHHHHHHHhhC
Confidence 579999999999999999999 9999999999999999996
No 2
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=99.83 E-value=1.5e-20 Score=173.37 Aligned_cols=85 Identities=28% Similarity=0.400 Sum_probs=78.3
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChh---HHHHHHHHhCCCCcceEEEcCeeecccHhHHHhHhcCc
Q 002682 424 KGRVILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPS---RKMELEKFAGSSAVPKVFFNEILMGGLSELKALDESGK 500 (893)
Q Consensus 424 kgkVvLYTksgCP~CkrAK~lL~e~GI~YeeIDId~d~e---~r~EL~k~sG~~TVPqIFInGk~IGG~DeL~el~esGe 500 (893)
.++|+||++++||||.+||++|+++|++|+++||+.++. .++++.+++|++|||+|||||++||||++|.+++++|+
T Consensus 7 ~~~Vvvysk~~Cp~C~~ak~~L~~~~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vfi~g~~iGG~ddl~~l~~~G~ 86 (99)
T TIGR02189 7 EKAVVIFSRSSCCMCHVVKRLLLTLGVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVFVGGKLVGGLENVMALHISGS 86 (99)
T ss_pred cCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEEECCEEEcCHHHHHHHHHcCC
Confidence 357999999999999999999999999999999998765 44577888899999999999999999999999999999
Q ss_pred chHHHHHH
Q 002682 501 LDEKIEYL 508 (893)
Q Consensus 501 L~~lLk~~ 508 (893)
|.++|+.+
T Consensus 87 L~~~l~~~ 94 (99)
T TIGR02189 87 LVPMLKQA 94 (99)
T ss_pred HHHHHHHh
Confidence 99999765
No 3
>PRK10824 glutaredoxin-4; Provisional
Probab=99.82 E-value=2.9e-20 Score=176.46 Aligned_cols=86 Identities=22% Similarity=0.351 Sum_probs=81.8
Q ss_pred CCcEEEEEc-----CCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCCCCcceEEEcCeeecccHhHHHhHhc
Q 002682 424 KGRVILYTR-----LGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILMGGLSELKALDES 498 (893)
Q Consensus 424 kgkVvLYTk-----sgCP~CkrAK~lL~e~GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFInGk~IGG~DeL~el~es 498 (893)
.++|+||++ |+||||++|+++|.++|++|..+||+.+++.+++|.+++|++|||||||||++|||+|+|.+++++
T Consensus 14 ~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~~idi~~d~~~~~~l~~~sg~~TVPQIFI~G~~IGG~ddl~~l~~~ 93 (115)
T PRK10824 14 ENPILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQNPDIRAELPKYANWPTFPQLWVDGELVGGCDIVIEMYQR 93 (115)
T ss_pred cCCEEEEECCCCCCCCCchHHHHHHHHHHcCCCceEEEecCCHHHHHHHHHHhCCCCCCeEEECCEEEcChHHHHHHHHC
Confidence 357999999 599999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchHHHHHHH
Q 002682 499 GKLDEKIEYLI 509 (893)
Q Consensus 499 GeL~~lLk~~~ 509 (893)
|+|+++|+.+-
T Consensus 94 G~L~~lL~~~~ 104 (115)
T PRK10824 94 GELQQLIKETA 104 (115)
T ss_pred CCHHHHHHHHH
Confidence 99999998764
No 4
>PHA03050 glutaredoxin; Provisional
Probab=99.82 E-value=3e-20 Score=174.22 Aligned_cols=85 Identities=21% Similarity=0.430 Sum_probs=80.3
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcCC---ceEEEEcCC---ChhHHHHHHHHhCCCCcceEEEcCeeecccHhHHHhHh
Q 002682 424 KGRVILYTRLGCQESREVRLFLYWKRL---RYVEINIDV---YPSRKMELEKFAGSSAVPKVFFNEILMGGLSELKALDE 497 (893)
Q Consensus 424 kgkVvLYTksgCP~CkrAK~lL~e~GI---~YeeIDId~---d~e~r~EL~k~sG~~TVPqIFInGk~IGG~DeL~el~e 497 (893)
.++|+||+++|||||.+||++|+++|+ +|+++||+. ..+.+++|.+.+|++|||+|||||++||||++|+++++
T Consensus 12 ~~~V~vys~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI~g~~iGG~ddl~~l~~ 91 (108)
T PHA03050 12 NNKVTIFVKFTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGGRTVPRIFFGKTSIGGYSDLLEIDN 91 (108)
T ss_pred cCCEEEEECCCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEECCEEEeChHHHHHHHH
Confidence 357999999999999999999999999 799999986 56889999999999999999999999999999999999
Q ss_pred cCcchHHHHHH
Q 002682 498 SGKLDEKIEYL 508 (893)
Q Consensus 498 sGeL~~lLk~~ 508 (893)
+|+|.++|+.+
T Consensus 92 ~g~L~~~l~~~ 102 (108)
T PHA03050 92 MDALGDILSSI 102 (108)
T ss_pred cCCHHHHHHHc
Confidence 99999999875
No 5
>cd04440 DEP_2_P-Rex DEP (Dishevelled, Egl-10, and Pleckstrin) domain 2 found in P-Rex-like proteins. The P-Rex family is the guanine-nucleotide exchange factor (GEF) for the small GTPase Rac that contains an N-terminal RhoGEF domain, two DEP and PDZ domains. Rac-GEF activity is stimulated by phosphatidylinositol (3,4,5)-trisphosphate (PtdIns(3,4,5)P3), a lipid second messenger, and the G beta-gamma subunits of heterotrimeric G proteins. The DEP domains are not involved in mediating these stimuli, but may be of importance for basal and stimulated levels Rac-GEF activity.
Probab=99.81 E-value=4.1e-20 Score=169.12 Aligned_cols=72 Identities=35% Similarity=0.561 Sum_probs=68.3
Q ss_pred CceeeccccceeeecccccchhHHHHHHhh-cccCHHHHHHHHHHHHhcccccccccccccccCCceEEecCC
Q 002682 547 NVVVKDRFYKMRRFTNCFLGSEAVNFLSED-QYLEREEAVEFGRKLASKLFFRHVLDENLFEDGNHLYRFLDH 618 (893)
Q Consensus 547 gi~IKDRr~~LrtYk~CF~GsELVDWLie~-~v~sReEAv~lGQ~Lld~glI~hV~~~~~F~Dg~~LYRF~~d 618 (893)
+-.|+||+|++++|++||+|+|||+||+++ .+.+|+||+.+||.|++.|+|+||.++|.|+|+++||||..|
T Consensus 21 ~~likdR~~~l~~y~~cFvGsElVdWLi~~g~~~tR~eAv~~gq~Ll~~gii~HV~~~h~F~D~~lfYrF~~d 93 (93)
T cd04440 21 TPVVKDRDYHLKTYKSVVPASKLVDWLLAQGDCRTREEAVILGVGLCNNGFMHHVLEKSEFKDEPLLFRFYAD 93 (93)
T ss_pred ccceeeceeccEEcccccchhHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCEEecCCCcCcCCcCeEEEEecC
Confidence 448999999999999999999999999998 578999999999999999999999999999999999999864
No 6
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=99.80 E-value=1.1e-19 Score=166.97 Aligned_cols=81 Identities=17% Similarity=0.355 Sum_probs=77.9
Q ss_pred CcEEEEEc-----CCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCCCCcceEEEcCeeecccHhHHHhHhcC
Q 002682 425 GRVILYTR-----LGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILMGGLSELKALDESG 499 (893)
Q Consensus 425 gkVvLYTk-----sgCP~CkrAK~lL~e~GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFInGk~IGG~DeL~el~esG 499 (893)
++|+||++ ++||||.+||++|+++||+|+++||..+++.+++|.+++|++|||+|||||++|||+++|.+++++|
T Consensus 12 ~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~~~~~~~l~~~tg~~tvP~vfi~g~~iGG~ddl~~l~~~g 91 (97)
T TIGR00365 12 NPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLEDPEIRQGIKEYSNWPTIPQLYVKGEFVGGCDIIMEMYQSG 91 (97)
T ss_pred CCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHhCCCCCCEEEECCEEEeChHHHHHHHHCc
Confidence 57999998 8999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHH
Q 002682 500 KLDEKI 505 (893)
Q Consensus 500 eL~~lL 505 (893)
+|.++|
T Consensus 92 ~L~~~l 97 (97)
T TIGR00365 92 ELQTLL 97 (97)
T ss_pred ChHHhC
Confidence 998875
No 7
>cd04448 DEP_PIKfyve DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in fungal RhoGEF (GDP/GTP exchange factor) PIKfyve-like proteins. PIKfyve contains N-terminal Fyve finger and DEP domains, a central chaperonin-like domain and a C-terminal PIPK (phosphatidylinositol phosphate kinase) domain. PIKfyve-like proteins are important phosphatidylinositol (3)-monophosphate (PtdIns(3)P)-5-kinases, producing PtdIns(3,5)P2, which plays a major role in multivesicular body (MVB) sorting and control of retrograde traffic from the vacuole back to the endosome and/or Golgi. PIKfyve itself has been shown to be play a role in regulating early-endosome-to-trans-Golgi network (TGN) retrograde trafficking.
Probab=99.80 E-value=5e-20 Score=164.90 Aligned_cols=78 Identities=31% Similarity=0.557 Sum_probs=73.8
Q ss_pred HHHHHHhccCCceeeccccceeeecccccchhHHHHHHhh-cccCHHHHHHHHHHHHhcccccccccccccccCCceEE
Q 002682 537 LALIVLKMKENVVVKDRFYKMRRFTNCFLGSEAVNFLSED-QYLEREEAVEFGRKLASKLFFRHVLDENLFEDGNHLYR 614 (893)
Q Consensus 537 La~iv~~mk~gi~IKDRr~~LrtYk~CF~GsELVDWLie~-~v~sReEAv~lGQ~Lld~glI~hV~~~~~F~Dg~~LYR 614 (893)
|...|++...|+.|+||++++++|++||+|+|||+||+++ .+.+|.||+.+||.|+++|+|+||.++|.|+|+++|||
T Consensus 2 l~~~m~~~~~gv~i~drr~~~~~y~~cF~GselVdWL~~~~~~~~R~eAv~~gq~Ll~~g~i~hV~~~~~F~D~~~~Yr 80 (81)
T cd04448 2 LWEKICRSSTGIEFQDHRYRLRTYTNCILGKELVNWLIRQGKAATRVQAIAIGQALLDAGWIECVSDDDLFRDEYALYK 80 (81)
T ss_pred HHHHhhCcCCCCeeEEEEECCEEcCcccChHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCEEecCCCCccccCccccC
Confidence 5667778888999999999999999999999999999998 57999999999999999999999999999999999997
No 8
>PRK10638 glutaredoxin 3; Provisional
Probab=99.79 E-value=2.8e-19 Score=158.40 Aligned_cols=83 Identities=31% Similarity=0.532 Sum_probs=79.1
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCCCCcceEEEcCeeecccHhHHHhHhcCcch
Q 002682 423 MKGRVILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILMGGLSELKALDESGKLD 502 (893)
Q Consensus 423 MkgkVvLYTksgCP~CkrAK~lL~e~GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFInGk~IGG~DeL~el~esGeL~ 502 (893)
|. +|+||++++||||++|+.+|+++|++|+++||+.+++.++++.+++|..+||+||+||++||||+++.+++++|+|.
T Consensus 1 m~-~v~ly~~~~Cp~C~~a~~~L~~~gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~~~g~~igG~~~~~~~~~~g~l~ 79 (83)
T PRK10638 1 MA-NVEIYTKATCPFCHRAKALLNSKGVSFQEIPIDGDAAKREEMIKRSGRTTVPQIFIDAQHIGGCDDLYALDARGGLD 79 (83)
T ss_pred CC-cEEEEECCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHhCCCCcCEEEECCEEEeCHHHHHHHHHcCCHH
Confidence 44 79999999999999999999999999999999999888899999999999999999999999999999999999999
Q ss_pred HHHH
Q 002682 503 EKIE 506 (893)
Q Consensus 503 ~lLk 506 (893)
++|+
T Consensus 80 ~~~~ 83 (83)
T PRK10638 80 PLLK 83 (83)
T ss_pred HHhC
Confidence 8874
No 9
>cd04437 DEP_Epac DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in Epac-like proteins. Epac (exchange proteins directly activated by cAMP) proteins are GEFs (guanine-nucleotide-exchange factors) for the small GTPases, Rap1 and Rap2. They are directly regulated by cyclic AMP, a second messenger that plays a role in the control of diverse cellular processes, such as cell adhesion and insulin secretion. Epac-like proteins share a common domain architecture, containing RasGEF, DEP and CAP-effector (cAMP binding) domains. The DEP domain is involved in membrane localization.
Probab=99.78 E-value=4.2e-19 Score=170.60 Aligned_cols=80 Identities=28% Similarity=0.467 Sum_probs=74.4
Q ss_pred cCCceeeccccceeeecccccchhHHHHHHhh--cccCHHHHHHHHHHHHhcccccccccccccccCCceEEecCCCCcc
Q 002682 545 KENVVVKDRFYKMRRFTNCFLGSEAVNFLSED--QYLEREEAVEFGRKLASKLFFRHVLDENLFEDGNHLYRFLDHDPLV 622 (893)
Q Consensus 545 k~gi~IKDRr~~LrtYk~CF~GsELVDWLie~--~v~sReEAv~lGQ~Lld~glI~hV~~~~~F~Dg~~LYRF~~ddP~~ 622 (893)
..+..||||+|++++|++||+|+||||||+++ .+.+|+||+.+||.|+++|+|+||.++|.|+|+++||||..+++..
T Consensus 12 ~~~~~ikdR~~~~~~y~~cF~GsElVdWLl~~~~~v~sR~eAv~lgq~Ll~~gvi~HV~~~h~F~D~~~fYrF~~d~~~~ 91 (125)
T cd04437 12 DAPHLIRDRKYHLRTYRQCCVGTELVDWLLQQSPCVQSRSQAVGMWQVLLEEGVLLHVDQELHFQDKYQFYRFSDDECSP 91 (125)
T ss_pred cCcccceeeeECCEECCcccccHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCCeEEeCCcCccccCCeeEEECCccCCc
Confidence 44779999999999999999999999999999 3689999999999999999999999999999999999999998765
Q ss_pred cc
Q 002682 623 SS 624 (893)
Q Consensus 623 ~s 624 (893)
.+
T Consensus 92 ~~ 93 (125)
T cd04437 92 AP 93 (125)
T ss_pred cc
Confidence 43
No 10
>cd04442 DEP_1_DEP6 DEP (Dishevelled, Egl-10, and Pleckstrin) domain 1 found in DEP6-like proteins. DEP6 proteins contain two DEP and a PDZ domain. Their function is unknown.
Probab=99.78 E-value=1.3e-19 Score=162.74 Aligned_cols=72 Identities=38% Similarity=0.694 Sum_probs=67.8
Q ss_pred ccCCceeeccccceeeecccccchhHHHHHHhhc-ccCHHHHHHHHHHHHhccccccccccc-ccccCCceEEe
Q 002682 544 MKENVVVKDRFYKMRRFTNCFLGSEAVNFLSEDQ-YLEREEAVEFGRKLASKLFFRHVLDEN-LFEDGNHLYRF 615 (893)
Q Consensus 544 mk~gi~IKDRr~~LrtYk~CF~GsELVDWLie~~-v~sReEAv~lGQ~Lld~glI~hV~~~~-~F~Dg~~LYRF 615 (893)
+.++..|+||+|++++|++||+|+||||||+++. +.+|+||+.+||.|++.|+|+||.++| .|+|+++||||
T Consensus 9 ~~~~~~IkdR~~~~r~y~~cF~GselVdWL~~~~~~~sR~eAv~lgq~Ll~~gvi~HV~~~h~~F~D~~~fYrF 82 (82)
T cd04442 9 LHEAKVIKDRRHHLRTYPNCFVGKELIDWLIEHKEASDRETAIKIMQKLLDHSIIHHVCDEHKEFKDAKLFYRF 82 (82)
T ss_pred cCCCCeeeeeEECCEEcCceeEcHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCEEeccCCcCceeCCceeeeC
Confidence 3557899999999999999999999999999994 789999999999999999999999998 69999999998
No 11
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=99.78 E-value=6.9e-19 Score=153.47 Aligned_cols=79 Identities=32% Similarity=0.573 Sum_probs=76.3
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCCCCcceEEEcCeeecccHhHHHhHhcCcchHHH
Q 002682 427 VILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILMGGLSELKALDESGKLDEKI 505 (893)
Q Consensus 427 VvLYTksgCP~CkrAK~lL~e~GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFInGk~IGG~DeL~el~esGeL~~lL 505 (893)
|+||++++||+|.+|+++|+++|++|+++||+.+++.++++.+.+|+.+||+|||||++|||++++.+++++|+|.++|
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i~i~g~~igg~~~~~~~~~~g~l~~~l 79 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSKGVTFTEIRVDGDPALRDEMMQRSGRRTVPQIFIGDVHVGGCDDLYALDREGKLDPLL 79 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHcCCCcEEEEecCCHHHHHHHHHHhCCCCcCEEEECCEEEcChHHHHHHHHcCChhhhC
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999999998764
No 12
>cd04439 DEP_1_P-Rex DEP (Dishevelled, Egl-10, and Pleckstrin) domain 1 found in P-Rex-like proteins. The P-Rex family is the guanine-nucleotide exchange factor (GEF) for the small GTPase Rac that contains an N-terminal RhoGEF domain, two DEP and PDZ domains. Rac-GEF activity is stimulated by phosphatidylinositol (3,4,5)-trisphosphate (PtdIns(3,4,5)P3), a lipid second messenger, and by the G beta-gamma subunits of heterotrimeric G proteins. The DEP domains are not involved in mediating these stimuli, but may be of importance for basal and stimulated levels Rac-GEF activity.
Probab=99.77 E-value=2.7e-19 Score=160.29 Aligned_cols=71 Identities=38% Similarity=0.651 Sum_probs=67.7
Q ss_pred cCCceeeccccceeeecccccchhHHHHHHhh-cccCHHHHHHHHHHHHhcccccccccccccccCCceEEe
Q 002682 545 KENVVVKDRFYKMRRFTNCFLGSEAVNFLSED-QYLEREEAVEFGRKLASKLFFRHVLDENLFEDGNHLYRF 615 (893)
Q Consensus 545 k~gi~IKDRr~~LrtYk~CF~GsELVDWLie~-~v~sReEAv~lGQ~Lld~glI~hV~~~~~F~Dg~~LYRF 615 (893)
..+..|+||+|++++|++||+|+|||+||+++ .+.+|+||+.+||.|++.|+|+||.++|.|+|+++||||
T Consensus 10 ~~~~~ikdr~~~~~~~~~cF~GselVdWL~~~~~~~~r~eAv~lg~~Ll~~G~i~HV~~~h~FkD~~~fYrF 81 (81)
T cd04439 10 KQGSLIKDRRRKLSTFPKCFLGNEFVSWLLEIGEISKPEEGVNLGQALLENGIIHHVSDKHQFKNEQVLYRF 81 (81)
T ss_pred cCCCceEeeEECcEEcCceeEhHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCEEecCCCCCEecCCeEEeC
Confidence 45778999999999999999999999999998 578899999999999999999999999999999999998
No 13
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=99.77 E-value=1.3e-18 Score=157.12 Aligned_cols=78 Identities=24% Similarity=0.409 Sum_probs=75.2
Q ss_pred CcEEEEEc-----CCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCCCCcceEEEcCeeecccHhHHHhHhcC
Q 002682 425 GRVILYTR-----LGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILMGGLSELKALDESG 499 (893)
Q Consensus 425 gkVvLYTk-----sgCP~CkrAK~lL~e~GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFInGk~IGG~DeL~el~esG 499 (893)
++|+||++ ++||||.+|+++|+++|++|+++||..+++.+++|.+.+|+.|||+|||||++|||++++++++++|
T Consensus 8 ~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~~~~~~~l~~~~g~~tvP~vfi~g~~iGG~~~l~~l~~~g 87 (90)
T cd03028 8 NPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILEDEEVRQGLKEYSNWPTFPQLYVNGELVGGCDIVKEMHESG 87 (90)
T ss_pred CCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHHHHHhCCCCCCEEEECCEEEeCHHHHHHHHHcC
Confidence 47999998 6999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cch
Q 002682 500 KLD 502 (893)
Q Consensus 500 eL~ 502 (893)
+|+
T Consensus 88 ~L~ 90 (90)
T cd03028 88 ELQ 90 (90)
T ss_pred CcC
Confidence 985
No 14
>cd04441 DEP_2_DEP6 DEP (Dishevelled, Egl-10, and Pleckstrin) domain 2 found in DEP6-like proteins. DEP6 proteins contain two DEP and a PDZ domain. Their function is unknown.
Probab=99.77 E-value=5.5e-19 Score=159.53 Aligned_cols=70 Identities=31% Similarity=0.519 Sum_probs=66.6
Q ss_pred CCceeeccccceeeecccccchhHHHHHHhh-cccCHHHHHHHHHHHHhcccccccccccccccCCceEEe
Q 002682 546 ENVVVKDRFYKMRRFTNCFLGSEAVNFLSED-QYLEREEAVEFGRKLASKLFFRHVLDENLFEDGNHLYRF 615 (893)
Q Consensus 546 ~gi~IKDRr~~LrtYk~CF~GsELVDWLie~-~v~sReEAv~lGQ~Lld~glI~hV~~~~~F~Dg~~LYRF 615 (893)
.+..|++|++++++|++||+|+||||||+++ .+.+|+||+.+||+|+++|+|+||.++|.|+|+++||||
T Consensus 15 ~~~~ik~R~~~~~~y~~cF~GsElVdWL~~~~~~~sR~eAv~lgq~Ll~~gii~HV~~~h~F~D~~~fYrF 85 (85)
T cd04441 15 ENSILQVREEEGVKYERTFVGSEFIDWLLQEGEAESRREAVQLCRRLLEHGIIQHVSNKHHFFDSNLLYQF 85 (85)
T ss_pred CCCceeeeEeCCEEcCCEeEchHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCEEecCCCCCccCCCeeeeC
Confidence 3457999999999999999999999999999 478999999999999999999999999999999999998
No 15
>cd04443 DEP_GPR155 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in GPR155-like proteins. GRP155-like proteins, also known as PGR22, contain an N-terminal permease domain, a central transmembrane region and a C-terminal DEP domain. They are orphan receptors of the class B G protein-coupled receptors. Their function is unknown.
Probab=99.76 E-value=5.3e-19 Score=159.08 Aligned_cols=79 Identities=34% Similarity=0.530 Sum_probs=70.3
Q ss_pred HHHHHHhccCCceeeccccceeeecccccchhHHHHHHhh-cccCHHHHHHHHHHHHhcccccccccccccccCCceEEe
Q 002682 537 LALIVLKMKENVVVKDRFYKMRRFTNCFLGSEAVNFLSED-QYLEREEAVEFGRKLASKLFFRHVLDENLFEDGNHLYRF 615 (893)
Q Consensus 537 La~iv~~mk~gi~IKDRr~~LrtYk~CF~GsELVDWLie~-~v~sReEAv~lGQ~Lld~glI~hV~~~~~F~Dg~~LYRF 615 (893)
+.........+..||||+|++++|++||+|+|||+||+++ .+.+|+||+.+||.|++.|+|+||.+++.|+|+++||||
T Consensus 4 f~~~~~~~~~~~~ikdR~~~~~~y~~cF~GselVdWL~~~~~~~sR~eAv~lg~~Ll~~G~i~HV~~~~~F~D~~~~YrF 83 (83)
T cd04443 4 FVRYHLDQCRQDIVKDRRCGLRTYKGVFCGCDLVSWLIEVGLAQDRGEAVLYGRRLLQGGVLQHITNEHHFRDENLLYRF 83 (83)
T ss_pred HHHHHHhcccchhhccceecceeccccccHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCEEecCCCcCEecCCeeEeC
Confidence 3333334444458999999999999999999999999998 579999999999999999999999999999999999998
No 16
>cd04438 DEP_dishevelled DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in dishevelled-like proteins. Dishevelled-like proteins play a key role in the transduction of the Wnt signal from the cell surface to the nucleus, which in turn is an important regulatory pathway for cellular development and growth. They contain an N-terminal DIX domain, a central PDZ domain, and a C-terminal DEP domain.
Probab=99.76 E-value=7.7e-19 Score=158.38 Aligned_cols=79 Identities=23% Similarity=0.437 Sum_probs=71.4
Q ss_pred HHHHHHhccCCceeeccccceeeecccccchhHHHHHHhh--cccCHHHHHHHHHHHHhcccccccccccccccCCceEE
Q 002682 537 LALIVLKMKENVVVKDRFYKMRRFTNCFLGSEAVNFLSED--QYLEREEAVEFGRKLASKLFFRHVLDENLFEDGNHLYR 614 (893)
Q Consensus 537 La~iv~~mk~gi~IKDRr~~LrtYk~CF~GsELVDWLie~--~v~sReEAv~lGQ~Lld~glI~hV~~~~~F~Dg~~LYR 614 (893)
++..|++...|+.|+||+|++++|++||+|+|||+||+++ .+.+|+||+.+||.|++.|+|+||.++|.|.|+ .||+
T Consensus 3 i~~~m~~~~~Gl~ikdR~~~~~~~p~~F~GsdlVdWL~~~~~~~~~R~eAv~~g~~Ll~~G~i~HV~~~h~F~d~-~yy~ 81 (84)
T cd04438 3 IPRVMRRPDSGLEIKDRMWLKITIPNSFIGSDLVDWLLSHVEGLTDRREARKYASSLLKLGYIRHTVNKITFSEQ-CYYV 81 (84)
T ss_pred hhHhhcCCCCCCceEEEEEeeEECCccccchHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCcEEecCCCccccCC-eEEe
Confidence 3445555677999999999999999999999999999998 478999999999999999999999999999965 8999
Q ss_pred ec
Q 002682 615 FL 616 (893)
Q Consensus 615 F~ 616 (893)
|-
T Consensus 82 ~~ 83 (84)
T cd04438 82 FG 83 (84)
T ss_pred cC
Confidence 85
No 17
>cd04449 DEP_DEPDC5-like DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in DEPDC5-like proteins. DEPDC5, in human also known as KIAA0645, is a DEP domain containing protein of unknown function.
Probab=99.75 E-value=7.9e-19 Score=157.62 Aligned_cols=78 Identities=36% Similarity=0.535 Sum_probs=70.2
Q ss_pred HHHHHhccCC--ceeeccccceeeecccccchhHHHHHHhh--cccCHHHHHHHHHHHHhcccccccccccccccCCceE
Q 002682 538 ALIVLKMKEN--VVVKDRFYKMRRFTNCFLGSEAVNFLSED--QYLEREEAVEFGRKLASKLFFRHVLDENLFEDGNHLY 613 (893)
Q Consensus 538 a~iv~~mk~g--i~IKDRr~~LrtYk~CF~GsELVDWLie~--~v~sReEAv~lGQ~Lld~glI~hV~~~~~F~Dg~~LY 613 (893)
.+|+++|+.. +.|++|++++++|++||+|+|+|+||+++ .+.+|+||+.+||.|+++|+|+||.++|.|.|+++||
T Consensus 2 ~~i~~~m~~~~~~~i~~r~~~~~~~~~cF~G~e~VdWL~~~~~~~~~r~eAv~lgq~Ll~~g~I~hv~~~~~F~d~~~~Y 81 (83)
T cd04449 2 AEIAEAMRDPSGIGIFDRSWHKGLPSNCFIGSEAVSWLINNFEDVDTREEAVELGQELMNEGLIEHVSGRHPFLDGFYFY 81 (83)
T ss_pred HHHHHHHhCCCCCceeechhcCccCCcceEhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCEEecCCCCCccCCCEeE
Confidence 3455566543 45999999999999999999999999998 3899999999999999999999999999999999999
Q ss_pred Ee
Q 002682 614 RF 615 (893)
Q Consensus 614 RF 615 (893)
|+
T Consensus 82 r~ 83 (83)
T cd04449 82 YI 83 (83)
T ss_pred eC
Confidence 96
No 18
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=8.3e-18 Score=157.20 Aligned_cols=88 Identities=23% Similarity=0.378 Sum_probs=80.9
Q ss_pred CCCCcEEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCCh---hHHHHHHHHhCCCCcceEEEcCeeecccHhHHHhHhc
Q 002682 422 VMKGRVILYTRLGCQESREVRLFLYWKRLRYVEINIDVYP---SRKMELEKFAGSSAVPKVFFNEILMGGLSELKALDES 498 (893)
Q Consensus 422 ~MkgkVvLYTksgCP~CkrAK~lL~e~GI~YeeIDId~d~---e~r~EL~k~sG~~TVPqIFInGk~IGG~DeL~el~es 498 (893)
.+.++|+||++++||||+++|.+|...++.+..+++|.++ +.+.+|.+.+|++|||+|||+|++|||+++++++|.+
T Consensus 11 i~~~~VVifSKs~C~~c~~~k~ll~~~~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI~Gk~iGG~~dl~~lh~~ 90 (104)
T KOG1752|consen 11 ISENPVVIFSKSSCPYCHRAKELLSDLGVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFIGGKFIGGASDLMALHKS 90 (104)
T ss_pred hhcCCEEEEECCcCchHHHHHHHHHhCCCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEECCEEEcCHHHHHHHHHc
Confidence 4556899999999999999999999999999999998553 7778889999999999999999999999999999999
Q ss_pred CcchHHHHHHH
Q 002682 499 GKLDEKIEYLI 509 (893)
Q Consensus 499 GeL~~lLk~~~ 509 (893)
|+|.++|+.+-
T Consensus 91 G~L~~~l~~~~ 101 (104)
T KOG1752|consen 91 GELVPLLKEAG 101 (104)
T ss_pred CCHHHHHHHhh
Confidence 99999998864
No 19
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=99.73 E-value=1.1e-17 Score=144.53 Aligned_cols=73 Identities=62% Similarity=1.074 Sum_probs=70.1
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCCCCcceEEEcCeeecccHhHHHhHh
Q 002682 425 GRVILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILMGGLSELKALDE 497 (893)
Q Consensus 425 gkVvLYTksgCP~CkrAK~lL~e~GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFInGk~IGG~DeL~el~e 497 (893)
++|+||++++||+|++|+++|+++||+|+++||..+++.++++.+++|..+||+||+||++|||+++|.+|++
T Consensus 1 ~~v~ly~~~~C~~C~ka~~~L~~~gi~~~~~di~~~~~~~~el~~~~g~~~vP~v~i~~~~iGg~~~~~~~~~ 73 (73)
T cd03027 1 GRVTIYSRLGCEDCTAVRLFLREKGLPYVEINIDIFPERKAELEERTGSSVVPQIFFNEKLVGGLTDLKSLEE 73 (73)
T ss_pred CEEEEEecCCChhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHHhCCCCcCEEEECCEEEeCHHHHHhhcC
Confidence 5799999999999999999999999999999999999999999999999999999999999999999998864
No 20
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=99.73 E-value=1.4e-17 Score=164.34 Aligned_cols=84 Identities=29% Similarity=0.498 Sum_probs=80.5
Q ss_pred cEEEEEcC------CChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCC----CCcceEEEcCeeecccHhHHHh
Q 002682 426 RVILYTRL------GCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGS----SAVPKVFFNEILMGGLSELKAL 495 (893)
Q Consensus 426 kVvLYTks------gCP~CkrAK~lL~e~GI~YeeIDId~d~e~r~EL~k~sG~----~TVPqIFInGk~IGG~DeL~el 495 (893)
+|+|||++ +||+|.+||++|++++|+|+++||+.+++.+++|.+++|. .|||||||+|++|||++++++|
T Consensus 1 ~VvlYttsl~giR~t~~~C~~ak~iL~~~~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI~G~~IGG~del~~L 80 (147)
T cd03031 1 RVVLYTTSLRGVRKTFEDCNNVRAILESFRVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFVDGRYLGGAEEVLRL 80 (147)
T ss_pred CEEEEEcCCcCCCCcChhHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEECCEEEecHHHHHHH
Confidence 48999999 9999999999999999999999999999999999999876 8999999999999999999999
Q ss_pred HhcCcchHHHHHHH
Q 002682 496 DESGKLDEKIEYLI 509 (893)
Q Consensus 496 ~esGeL~~lLk~~~ 509 (893)
+++|+|.++|+.+.
T Consensus 81 ~e~G~L~~lL~~~~ 94 (147)
T cd03031 81 NESGELRKLLKGIR 94 (147)
T ss_pred HHcCCHHHHHhhcc
Confidence 99999999998873
No 21
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=99.73 E-value=1.8e-17 Score=142.26 Aligned_cols=74 Identities=30% Similarity=0.574 Sum_probs=70.8
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCCC-CcceEEEcCeeecccHhHHHhHhcC
Q 002682 426 RVILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSS-AVPKVFFNEILMGGLSELKALDESG 499 (893)
Q Consensus 426 kVvLYTksgCP~CkrAK~lL~e~GI~YeeIDId~d~e~r~EL~k~sG~~-TVPqIFInGk~IGG~DeL~el~esG 499 (893)
+|+||++++||+|.+|+.+|+++||+|+++||+.+++.++++.+.+|.. +||+|||||++|||++++.+++++|
T Consensus 1 ~i~ly~~~~Cp~C~~ak~~L~~~~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~i~g~~igg~~~~~~~~~~g 75 (75)
T cd03418 1 KVEIYTKPNCPYCVRAKALLDKKGVDYEEIDVDGDPALREEMINRSGGRRTVPQIFIGDVHIGGCDDLYALERKG 75 (75)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCccCEEEECCEEEeChHHHHHHHhCc
Confidence 4899999999999999999999999999999999888899999988887 9999999999999999999999987
No 22
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=1.2e-17 Score=148.74 Aligned_cols=77 Identities=31% Similarity=0.571 Sum_probs=70.3
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCCh--hHHHHHHHHhCCCCcceEEEcCeeecccHhHHHhHhcCcch
Q 002682 426 RVILYTRLGCQESREVRLFLYWKRLRYVEINIDVYP--SRKMELEKFAGSSAVPKVFFNEILMGGLSELKALDESGKLD 502 (893)
Q Consensus 426 kVvLYTksgCP~CkrAK~lL~e~GI~YeeIDId~d~--e~r~EL~k~sG~~TVPqIFInGk~IGG~DeL~el~esGeL~ 502 (893)
.|+||++++||||++||++|+++|++|++++++.++ +.++.+++.+|++|||||||||++|||++++.++...|.|+
T Consensus 2 ~v~iyt~~~CPyC~~ak~~L~~~g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i~~~~igg~~d~~~~~~~~~l~ 80 (80)
T COG0695 2 NVTIYTKPGCPYCKRAKRLLDRKGVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFIGGKHVGGCDDLDALEAKGKLD 80 (80)
T ss_pred CEEEEECCCCchHHHHHHHHHHcCCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEECCEEEeCcccHHHHHhhccCC
Confidence 499999999999999999999999999999999877 66666666669999999999999999999999999988763
No 23
>cd04446 DEP_DEPDC4 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in DEPDC4-like proteins. DEPDC4 is a DEP domain containing protein of unknown function.
Probab=99.71 E-value=5.8e-18 Score=155.69 Aligned_cols=76 Identities=33% Similarity=0.535 Sum_probs=69.2
Q ss_pred HHHHhccCCceeeccccceeeecccccchhHHHHHHhhc---------ccCHHHHHHHHHHHHhccccccc-------cc
Q 002682 539 LIVLKMKENVVVKDRFYKMRRFTNCFLGSEAVNFLSEDQ---------YLEREEAVEFGRKLASKLFFRHV-------LD 602 (893)
Q Consensus 539 ~iv~~mk~gi~IKDRr~~LrtYk~CF~GsELVDWLie~~---------v~sReEAv~lGQ~Lld~glI~hV-------~~ 602 (893)
.+++.++.+++|+||+|++++|++||+|+||||||++.. ..+|++|+.+||.||++|+|+|| ..
T Consensus 3 ~ii~~~r~~v~ikdRr~~lk~y~~CF~GsEaVDwL~~~l~~n~~f~~~~~tR~~Av~l~q~Ll~~gvi~~V~~~~~~~~k 82 (95)
T cd04446 3 SIIDALQTQVEVKKRRHNLKSYHDCFLGSEAVDVVLAHLMQNKYFGDVDVPRAKAVRLCQALMDCRVFEAVGTKVFKKKK 82 (95)
T ss_pred HHHHHHHhcCcccceeeeceecccccchHHHHHHHHHHHhhccccCcccCCHHHHHHHHHHHHHcCCeeeccchhccccc
Confidence 578889999999999999999999999999999997631 45999999999999999999999 56
Q ss_pred ccccccC-CceEE
Q 002682 603 ENLFEDG-NHLYR 614 (893)
Q Consensus 603 ~~~F~Dg-~~LYR 614 (893)
++.|+|+ ..|||
T Consensus 83 ~~~F~D~~~~lYR 95 (95)
T cd04446 83 RAVFEDSSSSLYR 95 (95)
T ss_pred cccccCCCcCccC
Confidence 7899999 58997
No 24
>PTZ00062 glutaredoxin; Provisional
Probab=99.69 E-value=7.8e-17 Score=166.70 Aligned_cols=83 Identities=27% Similarity=0.384 Sum_probs=79.3
Q ss_pred CcEEEEEc-----CCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCCCCcceEEEcCeeecccHhHHHhHhcC
Q 002682 425 GRVILYTR-----LGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILMGGLSELKALDESG 499 (893)
Q Consensus 425 gkVvLYTk-----sgCP~CkrAK~lL~e~GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFInGk~IGG~DeL~el~esG 499 (893)
++|+||++ |+||||++++++|+++||+|.++||..+++.+++|.+++|++|||||||||++|||++++++|+++|
T Consensus 113 ~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~i~y~~~DI~~d~~~~~~l~~~sg~~TvPqVfI~G~~IGG~d~l~~l~~~G 192 (204)
T PTZ00062 113 HKILLFMKGSKTFPFCRFSNAVVNMLNSSGVKYETYNIFEDPDLREELKVYSNWPTYPQLYVNGELIGGHDIIKELYESN 192 (204)
T ss_pred CCEEEEEccCCCCCCChhHHHHHHHHHHcCCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEECCEEEcChHHHHHHHHcC
Confidence 57999999 6999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHH
Q 002682 500 KLDEKIEY 507 (893)
Q Consensus 500 eL~~lLk~ 507 (893)
+|.++|..
T Consensus 193 ~L~~~l~~ 200 (204)
T PTZ00062 193 SLRKVIPD 200 (204)
T ss_pred Chhhhhhh
Confidence 99998853
No 25
>cd04447 DEP_BRCC3 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in BBRC3-like proteins. BBRC3, also known as DEPDC1B, is a DEP containing protein of unknown function.
Probab=99.68 E-value=2.6e-17 Score=149.88 Aligned_cols=79 Identities=25% Similarity=0.470 Sum_probs=72.6
Q ss_pred HHHHHHhccCCceeeccccceeeecccccchhHHHHHHhhc--------ccCHHHHHHHHHHHHhccccccccc---ccc
Q 002682 537 LALIVLKMKENVVVKDRFYKMRRFTNCFLGSEAVNFLSEDQ--------YLEREEAVEFGRKLASKLFFRHVLD---ENL 605 (893)
Q Consensus 537 La~iv~~mk~gi~IKDRr~~LrtYk~CF~GsELVDWLie~~--------v~sReEAv~lGQ~Lld~glI~hV~~---~~~ 605 (893)
+.++++.|+.|+++++|+++|++|++||+|+||||||++.. ..+|.+|++++|+|+++++|+||.+ .+.
T Consensus 3 Wn~ii~~~r~g~~vk~rR~~lr~y~~CF~gsEAVDwL~~~l~~n~~fg~~vtR~~av~l~qkll~~hVie~V~g~~~~~~ 82 (92)
T cd04447 3 WNEVTELFRAGMPLRKHRQHFKSYENCFTASEAVDWLHELLRSNSNFGPEVTRQQTVQLLKKFLKNHVIEDIKGRWGKED 82 (92)
T ss_pred HHHHHHHHHccCChHHHHHhcccCccccchHHHHHHHHHHHHhccccCCCCCHHHHHHHHHHHHHcCCchhhccccccCc
Confidence 35678889999999999999999999999999999999873 5799999999999999999999965 578
Q ss_pred cccCCceEEe
Q 002682 606 FEDGNHLYRF 615 (893)
Q Consensus 606 F~Dg~~LYRF 615 (893)
|+|++.||||
T Consensus 83 FeD~~~lYRF 92 (92)
T cd04447 83 LEDNNHLYRF 92 (92)
T ss_pred cccccccccC
Confidence 9999999998
No 26
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=99.67 E-value=1.4e-16 Score=138.59 Aligned_cols=79 Identities=29% Similarity=0.521 Sum_probs=72.2
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCc--eEEEEcCCC---hhHHHHHHHHhCCCCcceEEEcCeeecccHhHHHhHhcCcc
Q 002682 427 VILYTRLGCQESREVRLFLYWKRLR--YVEINIDVY---PSRKMELEKFAGSSAVPKVFFNEILMGGLSELKALDESGKL 501 (893)
Q Consensus 427 VvLYTksgCP~CkrAK~lL~e~GI~--YeeIDId~d---~e~r~EL~k~sG~~TVPqIFInGk~IGG~DeL~el~esGeL 501 (893)
|++|+++|||+|.+++.+|.+++++ |+.++|+.+ .+.++++.+.+|..++|+||+||++|||++++.+++++|+|
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i~g~~igg~~~~~~~~~~g~l 80 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLNVKPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFINGKFIGGCSDLLALYKSGKL 80 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCCCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEECCEEEcCHHHHHHHHHcCCh
Confidence 6899999999999999999999999 888888754 45567788899999999999999999999999999999999
Q ss_pred hHHH
Q 002682 502 DEKI 505 (893)
Q Consensus 502 ~~lL 505 (893)
..+|
T Consensus 81 ~~~~ 84 (84)
T TIGR02180 81 AELL 84 (84)
T ss_pred hhhC
Confidence 8764
No 27
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=99.67 E-value=2.2e-16 Score=135.88 Aligned_cols=70 Identities=27% Similarity=0.428 Sum_probs=64.9
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCCCCcceEEEcCeeecccHhHHHhH
Q 002682 426 RVILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILMGGLSELKALD 496 (893)
Q Consensus 426 kVvLYTksgCP~CkrAK~lL~e~GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFInGk~IGG~DeL~el~ 496 (893)
+|+||++++||+|.+|+++|+++|++|+++||+.++. ..++...+|..+||+|||||++|||+++|.++.
T Consensus 2 ~v~lys~~~Cp~C~~ak~~L~~~~i~~~~~~v~~~~~-~~~~~~~~g~~~vP~ifi~g~~igg~~~l~~~l 71 (72)
T cd03029 2 SVSLFTKPGCPFCARAKAALQENGISYEEIPLGKDIT-GRSLRAVTGAMTVPQVFIDGELIGGSDDLEKYF 71 (72)
T ss_pred eEEEEECCCCHHHHHHHHHHHHcCCCcEEEECCCChh-HHHHHHHhCCCCcCeEEECCEEEeCHHHHHHHh
Confidence 5999999999999999999999999999999988774 557888899999999999999999999998875
No 28
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=99.65 E-value=4e-16 Score=135.67 Aligned_cols=78 Identities=24% Similarity=0.440 Sum_probs=71.9
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCC---hhHHHHHHHHhCCCCcceEEEcCeeecccHhHHHhHhcCcch
Q 002682 426 RVILYTRLGCQESREVRLFLYWKRLRYVEINIDVY---PSRKMELEKFAGSSAVPKVFFNEILMGGLSELKALDESGKLD 502 (893)
Q Consensus 426 kVvLYTksgCP~CkrAK~lL~e~GI~YeeIDId~d---~e~r~EL~k~sG~~TVPqIFInGk~IGG~DeL~el~esGeL~ 502 (893)
+|++|++++||+|.+|+.+|++++++|+.++++.+ .+.+.++.+++|..++|+||++|++|||++++.++.++|+|.
T Consensus 1 ~v~~y~~~~Cp~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v~~~g~~igg~~~~~~~~~~g~l~ 80 (82)
T cd03419 1 PVVVFSKSYCPYCKRAKSLLKELGVKPAVVELDQHEDGSEIQDYLQELTGQRTVPNVFIGGKFIGGCDDLMALHKSGKLV 80 (82)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHcCCCcEEEEEeCCCChHHHHHHHHHHhCCCCCCeEEECCEEEcCHHHHHHHHHcCCcc
Confidence 48999999999999999999999999999988755 445778999999999999999999999999999999999997
Q ss_pred H
Q 002682 503 E 503 (893)
Q Consensus 503 ~ 503 (893)
+
T Consensus 81 ~ 81 (82)
T cd03419 81 K 81 (82)
T ss_pred C
Confidence 5
No 29
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=99.65 E-value=5.8e-16 Score=136.40 Aligned_cols=72 Identities=28% Similarity=0.440 Sum_probs=65.4
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCCCCcceEEEcCeeecccHhHHHhH
Q 002682 424 KGRVILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILMGGLSELKALD 496 (893)
Q Consensus 424 kgkVvLYTksgCP~CkrAK~lL~e~GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFInGk~IGG~DeL~el~ 496 (893)
+.+|+||++++||+|.+||++|+++||+|+++||+.++.. .++...+|..+||+||+||++|||+++|.++.
T Consensus 7 ~~~V~ly~~~~Cp~C~~ak~~L~~~gi~y~~idi~~~~~~-~~~~~~~g~~~vP~i~i~g~~igG~~~l~~~l 78 (79)
T TIGR02190 7 PESVVVFTKPGCPFCAKAKATLKEKGYDFEEIPLGNDARG-RSLRAVTGATTVPQVFIGGKLIGGSDELEAYL 78 (79)
T ss_pred CCCEEEEECCCCHhHHHHHHHHHHcCCCcEEEECCCChHH-HHHHHHHCCCCcCeEEECCEEEcCHHHHHHHh
Confidence 3469999999999999999999999999999999887664 56778899999999999999999999998864
No 30
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=99.65 E-value=5.2e-16 Score=137.92 Aligned_cols=73 Identities=23% Similarity=0.438 Sum_probs=67.7
Q ss_pred cEEEEEcCCChhHHHHHHHHHh-----cCCceEEEEcCCChhHHHHHHHHhCC--CCcceEEEcCeeecccHhHHHhHhc
Q 002682 426 RVILYTRLGCQESREVRLFLYW-----KRLRYVEINIDVYPSRKMELEKFAGS--SAVPKVFFNEILMGGLSELKALDES 498 (893)
Q Consensus 426 kVvLYTksgCP~CkrAK~lL~e-----~GI~YeeIDId~d~e~r~EL~k~sG~--~TVPqIFInGk~IGG~DeL~el~es 498 (893)
+|+||++++||+|++|+++|++ .|++|+++||+.++..++++.+.+|. .+||||||||++|||+++|.++++.
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~ifi~g~~igg~~~~~~~~~~ 81 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGISKADLEKTVGKPVETVPQIFVDQKHIGGCTDFEAYVKE 81 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEEECCEEEcCHHHHHHHHHH
Confidence 3999999999999999999999 89999999999887778889888886 8999999999999999999998864
No 31
>PF00610 DEP: Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP); InterPro: IPR000591 This entry represents the DEP (Dishevelled, Egl-10 and Pleckstrin) domain, a globular domain of about 80 residues that is found in over 50 proteins involved in G-protein signalling pathways. It was named after the three proteins it was initially found in: Dishevelled (Dsh and Dvl), which play a key role in the transduction of the Wg/Wnt signal from the cell surface to the nucleus; it is a segment polarity protein required to establish coherent arrays of polarized cells and segments in embryos, and plays a role in wingless signalling. Egl-10, which regulates G-protein signalling in the central nervous system. Pleckstrin, the major substrate of protein kinase C in platelets; Pleckstrin contains two PH domains flanking the DEP domain. Mammalian regulators of G-protein signalling also contain these domains, and regulate signal transduction by increasing the GTPase activity of G-protein alpha subunits, thereby driving them into their inactive GDP-bound form. It has been proposed that the DEP domain could play a selective role in targeting DEP domain-containing proteins to specific subcellular membranous sites, perhaps even to specific G protein-coupled signaling pathways [, ]. Nuclear magnetic resonance spectroscopy has revealed that the DEP domain comprises a three-helix bundle, a beta-hairpin 'arm' composed of two beta-strands and two short beta-strands in the C-terminal region [].; GO: 0035556 intracellular signal transduction; PDB: 1UHW_A 1V3F_A 2YSR_A 2CSO_A 1W4M_A 2PBI_C 1O7F_A 2BYV_E 1FSH_A 3ML6_D ....
Probab=99.65 E-value=1.7e-16 Score=137.93 Aligned_cols=69 Identities=45% Similarity=0.804 Sum_probs=64.6
Q ss_pred CceeeccccceeeecccccchhHHHHHHhh---cccCHHHHHHHHHHHHhccccccccccc-ccccC-CceEEe
Q 002682 547 NVVVKDRFYKMRRFTNCFLGSEAVNFLSED---QYLEREEAVEFGRKLASKLFFRHVLDEN-LFEDG-NHLYRF 615 (893)
Q Consensus 547 gi~IKDRr~~LrtYk~CF~GsELVDWLie~---~v~sReEAv~lGQ~Lld~glI~hV~~~~-~F~Dg-~~LYRF 615 (893)
|+++++|++++++|++||+|+|+|+||+++ .+.+|+||+.+||.|++.|+|+||.+.+ .|.|+ +.||||
T Consensus 1 Gv~i~~~~~~~~~~~~~F~G~e~v~WL~~~~~~~~~~r~eA~~l~q~Ll~~g~i~~v~~~~~~F~d~~~~~Yrf 74 (74)
T PF00610_consen 1 GVPIKDRRKRLKTYPNCFTGSEAVDWLMDNFEGFVRDREEAVQLGQELLDHGFIEHVSDKSKQFKDSKNSLYRF 74 (74)
T ss_dssp SSCSEEEECSSEEECCEEEHHHHHHHHHHTSCTSTSSHHHHHHHHHHHHHCTSEEESSSSSHSS-SSSSSEEEE
T ss_pred CCccEEEEECCEEcCCEeEhHHHHHHHHHhccccccCHHHHHHHHHHHHHCCCEEECCCCCCCEECCCCcEEEC
Confidence 789999999999999999999999999985 3899999999999999999999999988 79999 899998
No 32
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=99.63 E-value=9.3e-16 Score=137.56 Aligned_cols=73 Identities=25% Similarity=0.454 Sum_probs=66.1
Q ss_pred EEEEEcCCChhHHHHHHHHHhc-----CCceEEEEcCCChhHHHHHHHHhCC--CCcceEEEcCeeecccHhHHHhHhcC
Q 002682 427 VILYTRLGCQESREVRLFLYWK-----RLRYVEINIDVYPSRKMELEKFAGS--SAVPKVFFNEILMGGLSELKALDESG 499 (893)
Q Consensus 427 VvLYTksgCP~CkrAK~lL~e~-----GI~YeeIDId~d~e~r~EL~k~sG~--~TVPqIFInGk~IGG~DeL~el~esG 499 (893)
|+||+++|||||.+|+++|+++ +++|+++||+.+...++++.+.+|. .+||+|||||++|||+++|.++++++
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi~g~~igG~~dl~~~~~~~ 81 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEGISKADLEKTVGKPVETVPQIFVDEKHVGGCTDFEQLVKEN 81 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEECCEEecCHHHHHHHHHhc
Confidence 7999999999999999999998 4679999998776667788888887 89999999999999999999998764
No 33
>cd04444 DEP_PLEK2 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in pleckstrin 2-like proteins. Pleckstrin 2 is found in a wide variety of cell types, which suggest a more general role in signaling than pleckstrin 1. Pleckstrin-like proteins contain a central DEP domain, flanked by 2 PH (pleckstrin homology) domains.
Probab=99.62 E-value=1.9e-16 Score=148.53 Aligned_cols=86 Identities=22% Similarity=0.307 Sum_probs=76.9
Q ss_pred cHHHHHHHHHhccCCceeeccccceeeecccccchhHHHHHHhh-cccCHHHHHHHHHHHHhccccccccc---------
Q 002682 533 AIDELALIVLKMKENVVVKDRFYKMRRFTNCFLGSEAVNFLSED-QYLEREEAVEFGRKLASKLFFRHVLD--------- 602 (893)
Q Consensus 533 ~l~eLa~iv~~mk~gi~IKDRr~~LrtYk~CF~GsELVDWLie~-~v~sReEAv~lGQ~Lld~glI~hV~~--------- 602 (893)
+|.+|+.-|+....|+.+.+|+|++++|++||+|+++||||+++ ...+|.||+.+||.||+.|+|+||..
T Consensus 1 ~L~~L~~~mq~~~~Gik~~~~r~~~k~y~~CF~Gse~VDWLv~~~~~i~R~EAv~l~q~Lmd~gli~hV~~~s~~~~~~~ 80 (109)
T cd04444 1 SLHRIVDKMHDSSTGIRHSPNMEQGSTYKKTFLGSALVDWLISNSFAASRLEAVTLASMLMEENFLRPVGVRSMGAIRSG 80 (109)
T ss_pred CHHHHHHHHhCCCcCcchhhhhhccccccccccchHHHHHHHHCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhhhhhcc
Confidence 46788888888888999999999999999999999999999999 56799999999999999999999952
Q ss_pred --ccccccCC-ceEEecCC
Q 002682 603 --ENLFEDGN-HLYRFLDH 618 (893)
Q Consensus 603 --~~~F~Dg~-~LYRF~~d 618 (893)
.+.|.|++ .||||.+.
T Consensus 81 ~~~~~f~d~s~aly~F~~~ 99 (109)
T cd04444 81 DLAEQFLDDSTALYTFAES 99 (109)
T ss_pred ccccccccCchHHHHhHHH
Confidence 45788775 99999863
No 34
>smart00049 DEP Domain found in Dishevelled, Egl-10, and Pleckstrin. Domain of unknown function present in signalling proteins that contain PH, rasGEF, rhoGEF, rhoGAP, RGS, PDZ domains. DEP domain in Drosophila dishevelled is essential to rescue planar polarity defects and induce JNK signalling (Cell 94, 109-118).
Probab=99.60 E-value=1.1e-15 Score=133.82 Aligned_cols=72 Identities=36% Similarity=0.730 Sum_probs=68.2
Q ss_pred cCCceeeccccceeeecccccchhHHHHHHhh-cccCHHHHHHHHHHHHhcccccccc--cccccccCCceEEec
Q 002682 545 KENVVVKDRFYKMRRFTNCFLGSEAVNFLSED-QYLEREEAVEFGRKLASKLFFRHVL--DENLFEDGNHLYRFL 616 (893)
Q Consensus 545 k~gi~IKDRr~~LrtYk~CF~GsELVDWLie~-~v~sReEAv~lGQ~Lld~glI~hV~--~~~~F~Dg~~LYRF~ 616 (893)
..|+++++|++++++|++||+|.|+|+||+++ .+.+|.||+++||.|++.|+|+||. ..+.|.|+..||||+
T Consensus 2 ~~gl~~~~~~~~~~~~~~~F~G~e~v~wL~~~~~~~~r~eA~~l~~~ll~~g~i~~v~~~~~~~F~d~~~~Yrf~ 76 (77)
T smart00049 2 ETGLKLRDRKYFLKTYPNCFTGSELVDWLMDNLEIIDREEAVHLGQLLLDEGLIHHVNGPNKHTFKDSKALYRFT 76 (77)
T ss_pred CCCcccEEEEECCEECcceeEcHHHHHHHHHcCCcCCHHHHHHHHHHHHHCCCEEEeCCCCcCccccCCEEEEeC
Confidence 46889999999999999999999999999999 5689999999999999999999999 689999999999997
No 35
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=2.3e-15 Score=138.75 Aligned_cols=84 Identities=17% Similarity=0.341 Sum_probs=78.9
Q ss_pred CcEEEEEc-----CCChhHHHHHHHHHhcC-CceEEEEcCCChhHHHHHHHHhCCCCcceEEEcCeeecccHhHHHhHhc
Q 002682 425 GRVILYTR-----LGCQESREVRLFLYWKR-LRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILMGGLSELKALDES 498 (893)
Q Consensus 425 gkVvLYTk-----sgCP~CkrAK~lL~e~G-I~YeeIDId~d~e~r~EL~k~sG~~TVPqIFInGk~IGG~DeL~el~es 498 (893)
++|++|.| |.|+|+.+|.++|..+| ++|..+||..+++.|+.+++.++|+|+||+||||++|||+|.+.+|+++
T Consensus 15 n~VvLFMKGtp~~P~CGFS~~~vqiL~~~g~v~~~~vnVL~d~eiR~~lk~~s~WPT~PQLyi~GEfvGG~DIv~Em~q~ 94 (105)
T COG0278 15 NPVVLFMKGTPEFPQCGFSAQAVQILSACGVVDFAYVDVLQDPEIRQGLKEYSNWPTFPQLYVNGEFVGGCDIVREMYQS 94 (105)
T ss_pred CceEEEecCCCCCCCCCccHHHHHHHHHcCCcceeEEeeccCHHHHhccHhhcCCCCCceeeECCEEeccHHHHHHHHHc
Confidence 46777776 67999999999999999 8999999999999999999999999999999999999999999999999
Q ss_pred CcchHHHHHH
Q 002682 499 GKLDEKIEYL 508 (893)
Q Consensus 499 GeL~~lLk~~ 508 (893)
|+|+++|++.
T Consensus 95 GELq~~l~~~ 104 (105)
T COG0278 95 GELQTLLKEA 104 (105)
T ss_pred chHHHHHHhc
Confidence 9999999764
No 36
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=99.59 E-value=5e-15 Score=123.18 Aligned_cols=72 Identities=28% Similarity=0.532 Sum_probs=68.6
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCCCCcceEEEcCeeecccHhHHHhHh
Q 002682 426 RVILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILMGGLSELKALDE 497 (893)
Q Consensus 426 kVvLYTksgCP~CkrAK~lL~e~GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFInGk~IGG~DeL~el~e 497 (893)
+|+||++++||+|++++.+|.+++++|.++|+..+++.+++|.+++|..++|+||+||++|||+++++++++
T Consensus 1 ~v~ly~~~~Cp~C~~~~~~L~~~~i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~~~~~~igg~~~~~~~~~ 72 (72)
T cd02066 1 KVVVFSKSTCPYCKRAKRLLESLGIEFEEIDILEDGELREELKELSGWPTVPQIFINGEFIGGYDDLKALHE 72 (72)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCcEEEEECCCCHHHHHHHHHHhCCCCcCEEEECCEEEecHHHHHHhhC
Confidence 489999999999999999999999999999999999889999999999999999999999999999998863
No 37
>cd04450 DEP_RGS7-like DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in RGS (regulator of G-protein signaling) proteins of the subfamily R7. This subgroup contains RGS7, RGS6, RGS9 and RGS11. They share a common domain architecture, containing, beside the RGS domain, a DEP domain and a GGL (G-protein gamma subunit-like ) domain. RGS proteins are GTPase-activating (GAP) proteins of heterotrimeric G proteins by increasing the rate of GTP hydrolysis of the alpha subunit. The fungal homologs, like yeast Sst2, share a related common domain architecture, containing RGS and DEP domains. Sst2 has been identified as the principal regulator of mating pheromone signaling and recently the DEP domain of Sst2 has been shown to be necessary and sufficient to mediate receptor interaction.
Probab=99.57 E-value=2.8e-15 Score=135.98 Aligned_cols=76 Identities=18% Similarity=0.267 Sum_probs=70.3
Q ss_pred HHhccCCceeeccccceeeecccccchhHHHHHHhh-cccCHHHHHHHHHHHHhcccccccccccc-cccCCceEEec
Q 002682 541 VLKMKENVVVKDRFYKMRRFTNCFLGSEAVNFLSED-QYLEREEAVEFGRKLASKLFFRHVLDENL-FEDGNHLYRFL 616 (893)
Q Consensus 541 v~~mk~gi~IKDRr~~LrtYk~CF~GsELVDWLie~-~v~sReEAv~lGQ~Lld~glI~hV~~~~~-F~Dg~~LYRF~ 616 (893)
+.....|+.+++|++++++|++||+|+++|+||+++ .+.+|+||+++|+.|++.|+|+||.+.+. |.|++++|||+
T Consensus 6 ~~~~~~Gv~~~~~r~~~~~~~~~F~G~~~v~WL~~~~~~~~~~EA~~~~~~ll~~gli~~V~~~~~~~~~~~~~yr~~ 83 (88)
T cd04450 6 MQDSEVGVRMRTEKSFLTTVPYAFTGKAIVQWLMDCTDVVDPSEALEIAALFVKYGLITPVSDHRSLLKPDETLYRFQ 83 (88)
T ss_pred hcCCCCCeeeeeeEEeeeEcCceeEhHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCEEEecCCcccccCCCceEecc
Confidence 445577999999999999999999999999999998 57999999999999999999999998765 88999999998
No 38
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=99.56 E-value=1.1e-14 Score=133.55 Aligned_cols=80 Identities=18% Similarity=0.299 Sum_probs=73.9
Q ss_pred EEEEEcCC------ChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCC----CCcceEEEcCeeecccHhHHHhH
Q 002682 427 VILYTRLG------CQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGS----SAVPKVFFNEILMGGLSELKALD 496 (893)
Q Consensus 427 VvLYTksg------CP~CkrAK~lL~e~GI~YeeIDId~d~e~r~EL~k~sG~----~TVPqIFInGk~IGG~DeL~el~ 496 (893)
|+||+++- =..|.+++.+|+.+||+|+++||+.+++.+++|.+.+|. +|||||||||+|||||+++.+++
T Consensus 2 i~vY~ts~~g~~~~k~~~~~v~~lL~~k~I~f~eiDI~~d~~~r~em~~~~~~~~g~~tvPQIFi~~~~iGg~ddl~~l~ 81 (92)
T cd03030 2 IKVYIASSSGSTEIKKRQQEVLGFLEAKKIEFEEVDISMNEENRQWMRENVPNENGKPLPPQIFNGDEYCGDYEAFFEAK 81 (92)
T ss_pred EEEEEecccccHHHHHHHHHHHHHHHHCCCceEEEecCCCHHHHHHHHHhcCCCCCCCCCCEEEECCEEeeCHHHHHHHH
Confidence 78888774 346999999999999999999999999999999999864 99999999999999999999999
Q ss_pred hcCcchHHHH
Q 002682 497 ESGKLDEKIE 506 (893)
Q Consensus 497 esGeL~~lLk 506 (893)
++|+|+++|+
T Consensus 82 e~g~L~~lLk 91 (92)
T cd03030 82 ENNTLEEFLK 91 (92)
T ss_pred hCCCHHHHhC
Confidence 9999999885
No 39
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=99.54 E-value=1.2e-14 Score=164.11 Aligned_cols=83 Identities=19% Similarity=0.348 Sum_probs=72.0
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHH--------HhCCCCcceEEEcCeeecccHhHHH
Q 002682 423 MKGRVILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEK--------FAGSSAVPKVFFNEILMGGLSELKA 494 (893)
Q Consensus 423 MkgkVvLYTksgCP~CkrAK~lL~e~GI~YeeIDId~d~e~r~EL~k--------~sG~~TVPqIFInGk~IGG~DeL~e 494 (893)
|+ +|+|||+++||+|++||++|+++||+|+++||+.++...+.+.+ .+|.+|||||||||++||||+++++
T Consensus 1 m~-~V~vys~~~Cp~C~~aK~~L~~~gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi~~~~igGf~~l~~ 79 (410)
T PRK12759 1 MV-EVRIYTKTNCPFCDLAKSWFGANDIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFVGDVHIGGYDNLMA 79 (410)
T ss_pred CC-cEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEECCEEEeCchHHHH
Confidence 44 79999999999999999999999999999999987754432222 3689999999999999999999987
Q ss_pred hHhcCcchHHHHHH
Q 002682 495 LDESGKLDEKIEYL 508 (893)
Q Consensus 495 l~esGeL~~lLk~~ 508 (893)
.+|+|.++|+.+
T Consensus 80 --~~g~l~~~~~~~ 91 (410)
T PRK12759 80 --RAGEVIARVKGS 91 (410)
T ss_pred --HhCCHHHHhcCC
Confidence 899999998663
No 40
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=99.54 E-value=1.9e-14 Score=119.91 Aligned_cols=60 Identities=30% Similarity=0.615 Sum_probs=58.4
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCCCCcceEEEcCeee
Q 002682 427 VILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILM 486 (893)
Q Consensus 427 VvLYTksgCP~CkrAK~lL~e~GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFInGk~I 486 (893)
|+||++++||+|.+++++|+++|++|+++||+.+++.++++.+.+|..++|+|||||++|
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i~g~~I 60 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEKGIPYEEVDVDEDEEAREELKELSGVRTVPQVFIDGKFI 60 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEETTEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHcCCeeeEcccccchhHHHHHHHHcCCCccCEEEECCEEC
Confidence 789999999999999999999999999999999999999999999999999999999986
No 41
>cd04371 DEP DEP domain, named after Dishevelled, Egl-10, and Pleckstrin, where this domain was first discovered. The function of this domain is still not clear, but it is believed to be important for the membrane association of the signaling proteins in which it is present. New studies show that the DEP domain of Sst2, a yeast RGS protein is necessary and sufficient for receptor interaction.
Probab=99.52 E-value=1.5e-14 Score=127.17 Aligned_cols=77 Identities=40% Similarity=0.713 Sum_probs=70.4
Q ss_pred HHHHHhccCCceeeccccceeeecccccchhHHHHHHhh-cccCHHHHHHHHHHHHhccccccccc-ccccccCCceEE
Q 002682 538 ALIVLKMKENVVVKDRFYKMRRFTNCFLGSEAVNFLSED-QYLEREEAVEFGRKLASKLFFRHVLD-ENLFEDGNHLYR 614 (893)
Q Consensus 538 a~iv~~mk~gi~IKDRr~~LrtYk~CF~GsELVDWLie~-~v~sReEAv~lGQ~Lld~glI~hV~~-~~~F~Dg~~LYR 614 (893)
...+..+..++.+++|++++++|++||+|+|+|+||+++ ...+|.+|+.+||.|++.|||+||.+ .+.|.|++.||+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~F~G~e~v~WL~~~~~~~~r~ea~~~~~~ll~~g~i~~v~~~~~~F~d~~~~Y~ 81 (81)
T cd04371 3 VRIMLDSDSGVPIKDRKYHLKTYPNCFTGSELVDWLLDNLEAITREEAVELGQALLKHGLIHHVSDDKHTFRDSYALYR 81 (81)
T ss_pred HHHhhccCCCCccEEEEECCEECCceeEcHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEEEeCCCCCccccCCeecC
Confidence 445666777899999999999999999999999999998 46899999999999999999999998 999999988885
No 42
>cd04445 DEP_PLEK1 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in pleckstrin 1-like proteins. Pleckstrin 1 plays a role in cell spreading and reorganization of actin cytoskeleton in platelets and leukocytes. Its activity is highly regulated by phosphorylation, mainly by protein kinase C. Pleckstrin-like proteins contain a central DEP domain, flanked by 2 PH (pleckstrin homology) domains.
Probab=99.44 E-value=9.4e-14 Score=127.37 Aligned_cols=84 Identities=23% Similarity=0.386 Sum_probs=75.6
Q ss_pred HHHHHHHHHhccCCceeeccccceeeecccccchhHHHHHHhh-cccCHHHHHHHHHHHHhccccccccc----------
Q 002682 534 IDELALIVLKMKENVVVKDRFYKMRRFTNCFLGSEAVNFLSED-QYLEREEAVEFGRKLASKLFFRHVLD---------- 602 (893)
Q Consensus 534 l~eLa~iv~~mk~gi~IKDRr~~LrtYk~CF~GsELVDWLie~-~v~sReEAv~lGQ~Lld~glI~hV~~---------- 602 (893)
+.++..-|++...||..++++...++|++||+|+++||||+.+ .+.+|+||+.+|+.|++.|||+|+.+
T Consensus 2 L~~lv~sMqDp~~GIk~~~~~~~~tv~~hcftGsdVVdWLv~~~~v~~r~EAl~las~Ll~eGyL~P~gd~sk~a~~~~~ 81 (99)
T cd04445 2 LSALYLSMKDPEKGIKELNLEKDKKVFNHCFTGSCVIDWLVSNQSVRNRQEGLMLASSLLNEGYLQPAGDTSKNAADGLA 81 (99)
T ss_pred HHHHHHHHhCcccchhhhhHHHhhccccceecccHHHHHHHHhhcccchHHHHHHHHHHHHcCCeeecCccchhHhhccc
Confidence 5677888888899999999999999999999999999999999 57789999999999999999999954
Q ss_pred ccccccC-CceEEecC
Q 002682 603 ENLFEDG-NHLYRFLD 617 (893)
Q Consensus 603 ~~~F~Dg-~~LYRF~~ 617 (893)
+..|.|+ ..||+|.+
T Consensus 82 ~~~fld~~~aly~f~d 97 (99)
T cd04445 82 ENPFLDNPDAFYYFPD 97 (99)
T ss_pred cccccCCccceeeccc
Confidence 4588876 58999975
No 43
>PRK10329 glutaredoxin-like protein; Provisional
Probab=99.44 E-value=3.1e-13 Score=120.70 Aligned_cols=65 Identities=22% Similarity=0.408 Sum_probs=60.9
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCCCCcceEEEcCeeecccHh
Q 002682 426 RVILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILMGGLSE 491 (893)
Q Consensus 426 kVvLYTksgCP~CkrAK~lL~e~GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFInGk~IGG~De 491 (893)
+|+||++++||+|.++|++|+++||+|+++||+.+++.++++.. .|..+||+|+++|..|+||+.
T Consensus 2 ~v~lYt~~~Cp~C~~ak~~L~~~gI~~~~idi~~~~~~~~~~~~-~g~~~vPvv~i~~~~~~Gf~~ 66 (81)
T PRK10329 2 RITIYTRNDCVQCHATKRAMESRGFDFEMINVDRVPEAAETLRA-QGFRQLPVVIAGDLSWSGFRP 66 (81)
T ss_pred EEEEEeCCCCHhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHH-cCCCCcCEEEECCEEEecCCH
Confidence 49999999999999999999999999999999999988888876 599999999999999999974
No 44
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=99.43 E-value=2.4e-13 Score=117.47 Aligned_cols=64 Identities=20% Similarity=0.320 Sum_probs=58.9
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCCCCcceEEEcCe-eecccHh
Q 002682 427 VILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEI-LMGGLSE 491 (893)
Q Consensus 427 VvLYTksgCP~CkrAK~lL~e~GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFInGk-~IGG~De 491 (893)
|+||++++||+|++|+++|+++||+|+++||+.+++.++++.. .|..+||+|+++|. +||||+.
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~~~~i~~~~~di~~~~~~~~~~~~-~g~~~vP~v~~~g~~~~~G~~~ 65 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALEEHGIAFEEINIDEQPEAIDYVKA-QGFRQVPVIVADGDLSWSGFRP 65 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHH-cCCcccCEEEECCCcEEeccCH
Confidence 5899999999999999999999999999999999988888876 59999999999775 9999974
No 45
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=1.3e-12 Score=135.91 Aligned_cols=83 Identities=22% Similarity=0.384 Sum_probs=78.5
Q ss_pred CcEEEEEc-----CCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCCCCcceEEEcCeeecccHhHHHhHhcC
Q 002682 425 GRVILYTR-----LGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILMGGLSELKALDESG 499 (893)
Q Consensus 425 gkVvLYTk-----sgCP~CkrAK~lL~e~GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFInGk~IGG~DeL~el~esG 499 (893)
.+|+||.| |.|+|++++..+|+++|++|..+||..|+++|+-+++++.|+|+||+||+|+++||+|.+.+|+++|
T Consensus 139 ~~v~lFmKG~p~~P~CGFS~~~v~iL~~~nV~~~~fdIL~DeelRqglK~fSdWPTfPQlyI~GEFiGGlDIl~~m~~~g 218 (227)
T KOG0911|consen 139 KPVMLFMKGTPEEPKCGFSRQLVGILQSHNVNYTIFDVLTDEELRQGLKEFSDWPTFPQLYVKGEFIGGLDILKEMHEKG 218 (227)
T ss_pred CeEEEEecCCCCcccccccHHHHHHHHHcCCCeeEEeccCCHHHHHHhhhhcCCCCccceeECCEeccCcHHHHHHhhcc
Confidence 46778876 5799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHH
Q 002682 500 KLDEKIEY 507 (893)
Q Consensus 500 eL~~lLk~ 507 (893)
+|...|++
T Consensus 219 eL~~~l~~ 226 (227)
T KOG0911|consen 219 ELVYTLKE 226 (227)
T ss_pred cHHHHhhc
Confidence 99988865
No 46
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=99.21 E-value=5.1e-11 Score=99.78 Aligned_cols=65 Identities=22% Similarity=0.414 Sum_probs=61.2
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCCCCcceEEEcCeeecccHh
Q 002682 427 VILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILMGGLSE 491 (893)
Q Consensus 427 VvLYTksgCP~CkrAK~lL~e~GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFInGk~IGG~De 491 (893)
|+||+.+|||+|++++.+|.+.+++|..+|++.++...+++.+.+|..+||+++++|+.++|++.
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~~~~~~g~~~ 66 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTSKGIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIGHKIIVGFDP 66 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHHCCCeEEEEeccCCHHHHHHHHHHhCCCcccEEEECCEEEeeCCH
Confidence 89999999999999999999999999999999888888888899999999999999999999753
No 47
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=99.11 E-value=2.9e-10 Score=95.16 Aligned_cols=66 Identities=26% Similarity=0.487 Sum_probs=61.6
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCCCCcceEEEcCeeecccHh
Q 002682 426 RVILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILMGGLSE 491 (893)
Q Consensus 426 kVvLYTksgCP~CkrAK~lL~e~GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFInGk~IGG~De 491 (893)
.|++|+.+|||+|.+++.+|.+.+++|..++++.++...+++.+.++..+||+|+++|+.|+|++.
T Consensus 1 ~v~l~~~~~c~~c~~~~~~l~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~~~~~i~g~~~ 66 (73)
T cd02976 1 EVTVYTKPDCPYCKATKRFLDERGIPFEEVDVDEDPEALEELKKLNGYRSVPVVVIGDEHLSGFRP 66 (73)
T ss_pred CEEEEeCCCChhHHHHHHHHHHCCCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEECCEEEecCCH
Confidence 389999999999999999999999999999999888888889888899999999999999999875
No 48
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=99.00 E-value=1e-09 Score=93.79 Aligned_cols=65 Identities=17% Similarity=0.188 Sum_probs=57.4
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHh-CCCCcceEEE-cCeeecccH
Q 002682 426 RVILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFA-GSSAVPKVFF-NEILMGGLS 490 (893)
Q Consensus 426 kVvLYTksgCP~CkrAK~lL~e~GI~YeeIDId~d~e~r~EL~k~s-G~~TVPqIFI-nGk~IGG~D 490 (893)
+|+||+.+|||+|++++.+|.++|++|+.+|++.++...+++.+++ |..+||+|++ ||+.+....
T Consensus 1 ~v~ly~~~~C~~C~~~~~~L~~~~~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i~~~~g~~l~~~~ 67 (77)
T TIGR02200 1 TITVYGTTWCGYCAQLMRTLDKLGAAYEWVDIEEDEGAADRVVSVNNGNMTVPTVKFADGSFLTNPS 67 (77)
T ss_pred CEEEEECCCChhHHHHHHHHHHcCCceEEEeCcCCHhHHHHHHHHhCCCceeCEEEECCCeEecCCC
Confidence 4899999999999999999999999999999998888888888887 8999999987 567766543
No 49
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=9.1e-10 Score=117.60 Aligned_cols=85 Identities=27% Similarity=0.452 Sum_probs=79.6
Q ss_pred CcEEEEEcC------CChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCC----CCcceEEEcCeeecccHhHHH
Q 002682 425 GRVILYTRL------GCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGS----SAVPKVFFNEILMGGLSELKA 494 (893)
Q Consensus 425 gkVvLYTks------gCP~CkrAK~lL~e~GI~YeeIDId~d~e~r~EL~k~sG~----~TVPqIFInGk~IGG~DeL~e 494 (893)
.+|+||+++ +--.|..|+.+|+..+|.|.+.||..+...++||..+.|. .++|+|||+|++|||.+++++
T Consensus 131 ~~VVvY~TsLRgvRkTfE~C~~VR~ilesf~V~v~ERDVSMd~~fr~EL~~~lg~~~~~~~LPrVFV~GryIGgaeeV~~ 210 (281)
T KOG2824|consen 131 DRVVVYTTSLRGVRKTFEDCNAVRAILESFRVKVDERDVSMDSEFREELQELLGEDEKAVSLPRVFVKGRYIGGAEEVVR 210 (281)
T ss_pred ceEEEEEcccchhhhhHHHHHHHHHHHHhCceEEEEecccccHHHHHHHHHHHhcccccCccCeEEEccEEeccHHHhhh
Confidence 379999986 6788999999999999999999999999999999998865 688999999999999999999
Q ss_pred hHhcCcchHHHHHHH
Q 002682 495 LDESGKLDEKIEYLI 509 (893)
Q Consensus 495 l~esGeL~~lLk~~~ 509 (893)
|++.|+|.++|+.+.
T Consensus 211 LnE~GkL~~lL~~~p 225 (281)
T KOG2824|consen 211 LNEEGKLGKLLKGIP 225 (281)
T ss_pred hhhcchHHHHHhcCC
Confidence 999999999998876
No 50
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=98.96 E-value=2.6e-09 Score=99.64 Aligned_cols=80 Identities=19% Similarity=0.363 Sum_probs=64.2
Q ss_pred EEEEEcCCCh------hHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhC---------CCCcceEEEcCeeecccHh
Q 002682 427 VILYTRLGCQ------ESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAG---------SSAVPKVFFNEILMGGLSE 491 (893)
Q Consensus 427 VvLYTksgCP------~CkrAK~lL~e~GI~YeeIDId~d~e~r~EL~k~sG---------~~TVPqIFInGk~IGG~De 491 (893)
|.||+++.-+ .|.++..+|+.++|+|+++||..+++.|+.|++..| ....||||+||+++|+|++
T Consensus 3 I~vy~ss~sg~~~ikk~q~~v~~iL~a~kI~fe~vDIa~~e~~r~~mr~~~g~~~~~~~~~~~lpPqiF~~~~Y~Gdye~ 82 (99)
T PF04908_consen 3 IKVYISSISGSREIKKRQQRVLMILEAKKIPFEEVDIAMDEEARQWMRENAGPEEKDPGNGKPLPPQIFNGDEYCGDYED 82 (99)
T ss_dssp EEEEE-SS-SSHHHHHHHHHHHHHHHHTT--EEEEETTT-HHHHHHHHHHT--CCCS-TSTT--S-EEEETTEEEEEHHH
T ss_pred EEEEEecccCCHHHHHHHHHHHHHHHHcCCCcEEEeCcCCHHHHHHHHHhccccccCCCCCCCCCCEEEeCCEEEeeHHH
Confidence 8899977544 478999999999999999999999999999999874 4566899999999999999
Q ss_pred HHHhHhcCcchHHHH
Q 002682 492 LKALDESGKLDEKIE 506 (893)
Q Consensus 492 L~el~esGeL~~lLk 506 (893)
+.++.+.|+|.++|+
T Consensus 83 f~ea~E~~~L~~fL~ 97 (99)
T PF04908_consen 83 FEEANENGELEEFLK 97 (99)
T ss_dssp HHHHHCTT-HHHHHT
T ss_pred HHHHHhhCHHHHHhC
Confidence 999999999999885
No 51
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=98.81 E-value=8.6e-09 Score=87.00 Aligned_cols=58 Identities=14% Similarity=0.172 Sum_probs=50.5
Q ss_pred cEEEEEcCCChhHHHHHHHHHhc-----CCceEEEEcCCChhHHHHHHHHhCCCCcceEEEcCeeec
Q 002682 426 RVILYTRLGCQESREVRLFLYWK-----RLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILMG 487 (893)
Q Consensus 426 kVvLYTksgCP~CkrAK~lL~e~-----GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFInGk~IG 487 (893)
+|++|+++|||+|.+++.+|++. +++|..+|++.+++ +.+.+|..++|+|++||++++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~~~~~----l~~~~~i~~vPti~i~~~~~~ 64 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNPNISAEMIDAAEFPD----LADEYGVMSVPAIVINGKVEF 64 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEEEcccCHh----HHHHcCCcccCEEEECCEEEE
Confidence 48999999999999999999875 68999999987654 455679999999999998875
No 52
>KOG3571 consensus Dishevelled 3 and related proteins [General function prediction only]
Probab=98.74 E-value=7.9e-09 Score=117.04 Aligned_cols=81 Identities=26% Similarity=0.527 Sum_probs=70.9
Q ss_pred HHHHHHHhc---cCCceeeccccceeeecccccchhHHHHHHhh--cccCHHHHHHHHHHHHhcccccccccccccccCC
Q 002682 536 ELALIVLKM---KENVVVKDRFYKMRRFTNCFLGSEAVNFLSED--QYLEREEAVEFGRKLASKLFFRHVLDENLFEDGN 610 (893)
Q Consensus 536 eLa~iv~~m---k~gi~IKDRr~~LrtYk~CF~GsELVDWLie~--~v~sReEAv~lGQ~Lld~glI~hV~~~~~F~Dg~ 610 (893)
.|+.++++| ..|+.||||.|...+.++.|+|+|||+||.+| +..+|.+|..|+..|+..|||+|+.+...|...+
T Consensus 392 d~~~vvraMa~pdSGLeirdRmWlKItIPnafiGsDlVdWL~~hVeg~~~RkeAR~yAs~lLk~g~IrHtVnK~TFtEqC 471 (626)
T KOG3571|consen 392 DMIIVVRAMARPDSGLEIRDRMWLKITIPNAFIGSDLVDWLVDHVEGLHERKEARKYASRLLKAGYIRHTVNKLTFTEQC 471 (626)
T ss_pred cHHHHHHhhcCCCCcceeccceeeeeecchhhcchhHHHHHHHHhhhhhhHHHHHHHHHHHHHhCchhhcccceeeeeee
Confidence 455555555 66999999999999999999999999999999 6899999999999999999999999999997554
Q ss_pred ceEEecC
Q 002682 611 HLYRFLD 617 (893)
Q Consensus 611 ~LYRF~~ 617 (893)
||-|-+
T Consensus 472 -YYVfGD 477 (626)
T KOG3571|consen 472 -YYVFGD 477 (626)
T ss_pred -EEEecc
Confidence 567764
No 53
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=98.70 E-value=6.2e-08 Score=84.76 Aligned_cols=71 Identities=17% Similarity=0.061 Sum_probs=61.2
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCCCCcceEEE--cCeeecccHhHHHhHh
Q 002682 427 VILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF--NEILMGGLSELKALDE 497 (893)
Q Consensus 427 VvLYTksgCP~CkrAK~lL~e~GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFI--nGk~IGG~DeL~el~e 497 (893)
++||+.++||+|.+++.+|..+|++|+.++|........++.+.++..+||++.. +|..+.+...+.++.+
T Consensus 2 ~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~v~~~~~~~~~~~~~~p~~~vP~l~~~~~~~~l~es~~I~~yL~ 74 (77)
T cd03041 2 LELYEFEGSPFCRLVREVLTELELDVILYPCPKGSPKRDKFLEKGGKVQVPYLVDPNTGVQMFESADIVKYLF 74 (77)
T ss_pred ceEecCCCCchHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHhCCCCcccEEEeCCCCeEEEcHHHHHHHHH
Confidence 6899999999999999999999999999999866655678888899999999987 3677888777776654
No 54
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=98.61 E-value=9.6e-08 Score=77.93 Aligned_cols=69 Identities=22% Similarity=0.162 Sum_probs=59.0
Q ss_pred EEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCCCCcceEEEcCeeecccHhHHHhH
Q 002682 428 ILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILMGGLSELKALD 496 (893)
Q Consensus 428 vLYTksgCP~CkrAK~lL~e~GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFInGk~IGG~DeL~el~ 496 (893)
+||+.++||+|.+++.+|+.+|++|+.++++.......++.+.++..++|+++++|..+++...+.+..
T Consensus 2 ~ly~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~es~~I~~yl 70 (71)
T cd00570 2 KLYYFPGSPRSLRVRLALEEKGLPYELVPVDLGEGEQEEFLALNPLGKVPVLEDGGLVLTESLAILEYL 70 (71)
T ss_pred EEEeCCCCccHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHhcCCCCCCCEEEECCEEEEcHHHHHHHh
Confidence 689999999999999999999999999998755433336778889999999999999999887766553
No 55
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=98.56 E-value=2.9e-07 Score=79.73 Aligned_cols=69 Identities=19% Similarity=0.306 Sum_probs=56.7
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCCCCcceEEEc----CeeecccHhHHHhHh
Q 002682 426 RVILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFN----EILMGGLSELKALDE 497 (893)
Q Consensus 426 kVvLYTksgCP~CkrAK~lL~e~GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFIn----Gk~IGG~DeL~el~e 497 (893)
+|+||+.++||+|.+++.+|..+||+|+.++++. ..+.++ +.++..+||+++++ |..+.....+.++.+
T Consensus 1 ~i~Ly~~~~~p~c~kv~~~L~~~gi~y~~~~~~~--~~~~~~-~~~~~~~vP~l~~~~~~~~~~l~eS~~I~~yL~ 73 (77)
T cd03040 1 KITLYQYKTCPFCCKVRAFLDYHGIPYEVVEVNP--VSRKEI-KWSSYKKVPILRVESGGDGQQLVDSSVIISTLK 73 (77)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCCceEEEECCc--hhHHHH-HHhCCCccCEEEECCCCCccEEEcHHHHHHHHH
Confidence 4899999999999999999999999999999853 223444 45789999999987 777877777766554
No 56
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=98.54 E-value=3.7e-07 Score=82.23 Aligned_cols=79 Identities=18% Similarity=0.145 Sum_probs=63.9
Q ss_pred CCCcCCCCCcEEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCCCCcceEEEc-CeeecccHhHHHh
Q 002682 417 PPQPLVMKGRVILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFN-EILMGGLSELKAL 495 (893)
Q Consensus 417 ~~~~~~MkgkVvLYTksgCP~CkrAK~lL~e~GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFIn-Gk~IGG~DeL~el 495 (893)
.+....+.+.+++|+.+.||+|.+++.+|..+|++|+.++++... ...++.+.++..+||++.++ |..+.....+.++
T Consensus 9 ~~~~~~~~~~~~Ly~~~~sp~~~kv~~~L~~~gl~~~~~~v~~~~-~~~~~~~~np~~~vPvL~~~~g~~l~eS~aI~~y 87 (89)
T cd03055 9 SAEPPPVPGIIRLYSMRFCPYAQRARLVLAAKNIPHEVININLKD-KPDWFLEKNPQGKVPALEIDEGKVVYESLIICEY 87 (89)
T ss_pred CCCCCCCCCcEEEEeCCCCchHHHHHHHHHHcCCCCeEEEeCCCC-CcHHHHhhCCCCCcCEEEECCCCEEECHHHHHHh
Confidence 334445666799999999999999999999999999999987543 23567788899999999998 7888777766655
Q ss_pred H
Q 002682 496 D 496 (893)
Q Consensus 496 ~ 496 (893)
.
T Consensus 88 L 88 (89)
T cd03055 88 L 88 (89)
T ss_pred h
Confidence 3
No 57
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=98.49 E-value=4.1e-07 Score=77.78 Aligned_cols=68 Identities=16% Similarity=0.166 Sum_probs=57.1
Q ss_pred EEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCCCCcceEEEc-CeeecccHhHHHhHh
Q 002682 428 ILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFN-EILMGGLSELKALDE 497 (893)
Q Consensus 428 vLYTksgCP~CkrAK~lL~e~GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFIn-Gk~IGG~DeL~el~e 497 (893)
++|+.++||+|.+++.+|..+|++|+.+.++..+.. ...+.++..+||+++++ |..+++...+.++.+
T Consensus 2 ~Ly~~~~~p~~~rvr~~L~~~gl~~~~~~~~~~~~~--~~~~~~~~~~vP~L~~~~~~~l~es~aI~~yL~ 70 (71)
T cd03037 2 KLYIYEHCPFCVKARMIAGLKNIPVEQIILQNDDEA--TPIRMIGAKQVPILEKDDGSFMAESLDIVAFID 70 (71)
T ss_pred ceEecCCCcHhHHHHHHHHHcCCCeEEEECCCCchH--HHHHhcCCCccCEEEeCCCeEeehHHHHHHHHh
Confidence 489999999999999999999999999998754322 23456788899999997 899999998887764
No 58
>KOG3572 consensus Uncharacterized conserved protein, contains DEP domain [Signal transduction mechanisms]
Probab=98.47 E-value=1.2e-07 Score=115.86 Aligned_cols=88 Identities=25% Similarity=0.381 Sum_probs=82.2
Q ss_pred ccHHHHHHHHHhccCCceeeccccceeeecccccchhHHHHHHhh--cccCHHHHHHHHHH--HHhcccccccccccccc
Q 002682 532 GAIDELALIVLKMKENVVVKDRFYKMRRFTNCFLGSEAVNFLSED--QYLEREEAVEFGRK--LASKLFFRHVLDENLFE 607 (893)
Q Consensus 532 ~~l~eLa~iv~~mk~gi~IKDRr~~LrtYk~CF~GsELVDWLie~--~v~sReEAv~lGQ~--Lld~glI~hV~~~~~F~ 607 (893)
..+..|+.+++.|+. +.++++.||.+.|..||+|+|.|.||+.+ .+.+|++|+.+||+ ++..|+++|+...|.|.
T Consensus 1271 a~lStLtk~lq~m~~-~klq~~~wh~~~~e~CF~gsE~VnWL~n~f~gI~Tre~AikygqK~~e~qlglf~hal~kh~fl 1349 (1701)
T KOG3572|consen 1271 AWLSTLTKLLQLMND-IKLQYQGWHPDPNELCFRGSEWVNWLQNYFAGIETREKAIKYGQKTNEKQLGLFHHALMKHVFL 1349 (1701)
T ss_pred hhHHHHHHHHhccCC-CceeeecccCCcchhhhhhHHHHHHHHHhhhhhhhHHHHHHHHhhhhHHHhhhhhhhhhcceec
Confidence 467889999999988 99999999999999999999999999998 58999999999999 99999999999999999
Q ss_pred cCCceEEecCCCC
Q 002682 608 DGNHLYRFLDHDP 620 (893)
Q Consensus 608 Dg~~LYRF~~ddP 620 (893)
||.++|++..+..
T Consensus 1350 dG~YfY~ivpeys 1362 (1701)
T KOG3572|consen 1350 DGLYFYYIVPEYS 1362 (1701)
T ss_pred cceEEEEeccccc
Confidence 9999999998643
No 59
>cd04436 DEP_fRgd2 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in fungal RhoGAP (GTPase-activator protein) Rgd2-like proteins. Rgd2-like proteins share a common domain architecture, containing, beside the RhoGAP domain, a DEP and a FCH (Fes/CIP4 homology) domain. Yeast Rgd2 is a GAP protein for Cdc42 and Rho5.
Probab=98.33 E-value=5.2e-07 Score=81.90 Aligned_cols=78 Identities=24% Similarity=0.360 Sum_probs=65.3
Q ss_pred HHHHHHhccCCceeeccccce-eeecccccchhHHHHHHhh-cccCHHHHHHHHHHHHhccccccccc-ccccccCC-ce
Q 002682 537 LALIVLKMKENVVVKDRFYKM-RRFTNCFLGSEAVNFLSED-QYLEREEAVEFGRKLASKLFFRHVLD-ENLFEDGN-HL 612 (893)
Q Consensus 537 La~iv~~mk~gi~IKDRr~~L-rtYk~CF~GsELVDWLie~-~v~sReEAv~lGQ~Lld~glI~hV~~-~~~F~Dg~-~L 612 (893)
|.+++.+|=..+++.+|+.-+ -+|.+||+|+++|+||+++ ...++..|-.|||.|++.|||+.|.. ...|.++. .+
T Consensus 2 lk~lL~~ml~~ip~~~~kvPilGty~nt~sG~~Iv~~L~~n~~~~s~~~aE~fGQdLv~~gfir~~g~vG~~F~nSs~~~ 81 (84)
T cd04436 2 LKELLAAMLKEIPLADYKVPILGTYQNTSSGSEIVSWLQENMPEKDLDAAEAFGQDLLNQGFLRLVGGVGSTFVNSSKFQ 81 (84)
T ss_pred HHHHHHHHHHhCCCccceecccccccCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCchHHHhcccCcceecCccce
Confidence 556777888888888887654 4899999999999999999 57899999999999999999999985 56777654 55
Q ss_pred EE
Q 002682 613 YR 614 (893)
Q Consensus 613 YR 614 (893)
|+
T Consensus 82 Yq 83 (84)
T cd04436 82 YQ 83 (84)
T ss_pred ec
Confidence 53
No 60
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=98.32 E-value=5.8e-07 Score=84.83 Aligned_cols=50 Identities=26% Similarity=0.413 Sum_probs=44.7
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCCCCc
Q 002682 427 VILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAV 476 (893)
Q Consensus 427 VvLYTksgCP~CkrAK~lL~e~GI~YeeIDId~d~e~r~EL~k~sG~~TV 476 (893)
|+||+.++||+|++|+++|+++|++|+++|+..++..+.+|.++.+...+
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~el~~~~~~~~~ 50 (111)
T cd03036 1 LKFYEYPKCSTCRKAKKWLDEHGVDYTAIDIVEEPPSKEELKKWLEKSGL 50 (111)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCceEEecccCCcccHHHHHHHHHHcCC
Confidence 68999999999999999999999999999999988888888887665544
No 61
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=98.29 E-value=2.2e-06 Score=73.03 Aligned_cols=70 Identities=17% Similarity=0.174 Sum_probs=57.8
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCCCCcceEEEcCeeecccHhHHHhHh
Q 002682 427 VILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILMGGLSELKALDE 497 (893)
Q Consensus 427 VvLYTksgCP~CkrAK~lL~e~GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFInGk~IGG~DeL~el~e 497 (893)
++||+.++||+|.+++.+|..+|++|+.++++.... ..++.+.++..+||++..+|..+.....+.++.+
T Consensus 1 ~~ly~~~~~~~~~~v~~~l~~~gi~~~~~~v~~~~~-~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~ 70 (73)
T cd03059 1 MTLYSGPDDVYSHRVRIVLAEKGVSVEIIDVDPDNP-PEDLAELNPYGTVPTLVDRDLVLYESRIIMEYLD 70 (73)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCccEEEEcCCCCC-CHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHHH
Confidence 369999999999999999999999999998874422 3567788888999999888887777776666543
No 62
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=98.28 E-value=2.5e-06 Score=73.20 Aligned_cols=66 Identities=14% Similarity=0.208 Sum_probs=55.1
Q ss_pred EEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCCCCcceEEEc-CeeecccHhHHH
Q 002682 428 ILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFN-EILMGGLSELKA 494 (893)
Q Consensus 428 vLYTksgCP~CkrAK~lL~e~GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFIn-Gk~IGG~DeL~e 494 (893)
+||+.++||+|.+++.+|..+|++|+.++++.... ..++.+.++..+||++..+ |..+.....+.+
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl~~e~~~v~~~~~-~~~~~~~np~~~vP~L~~~~g~~l~eS~aI~~ 68 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGITVELREVELKNK-PAEMLAASPKGTVPVLVLGNGTVIEESLDIMR 68 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCCCcEEEEeCCCCC-CHHHHHHCCCCCCCEEEECCCcEEecHHHHHH
Confidence 68999999999999999999999999999875432 3578888999999999996 887766555544
No 63
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=98.25 E-value=2.2e-06 Score=72.50 Aligned_cols=69 Identities=19% Similarity=0.243 Sum_probs=55.2
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCC--hhHHHHHHHHhCCCCcceEEE-cCeeecccHhHHHh
Q 002682 427 VILYTRLGCQESREVRLFLYWKRLRYVEINIDVY--PSRKMELEKFAGSSAVPKVFF-NEILMGGLSELKAL 495 (893)
Q Consensus 427 VvLYTksgCP~CkrAK~lL~e~GI~YeeIDId~d--~e~r~EL~k~sG~~TVPqIFI-nGk~IGG~DeL~el 495 (893)
++||+.++||+|.+++.+|..+|++|+.+.++.. .....++.+.++..+||++.+ +|..+.....+.++
T Consensus 1 ~~Ly~~~~s~~~~~~~~~L~~~~l~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~~l~es~aI~~y 72 (74)
T cd03051 1 MKLYDSPTAPNPRRVRIFLAEKGIDVPLVTVDLAAGEQRSPEFLAKNPAGTVPVLELDDGTVITESVAICRY 72 (74)
T ss_pred CEEEeCCCCcchHHHHHHHHHcCCCceEEEeecccCccCCHHHHhhCCCCCCCEEEeCCCCEEecHHHHHHH
Confidence 3699999999999999999999999999888642 233467888899999999997 66666666555544
No 64
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=98.22 E-value=3.5e-06 Score=72.04 Aligned_cols=70 Identities=19% Similarity=0.099 Sum_probs=57.9
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCceEEEEcCC--ChhHHHHHHHHhCCCCcceEEEcCeeecccHhHHHhH
Q 002682 427 VILYTRLGCQESREVRLFLYWKRLRYVEINIDV--YPSRKMELEKFAGSSAVPKVFFNEILMGGLSELKALD 496 (893)
Q Consensus 427 VvLYTksgCP~CkrAK~lL~e~GI~YeeIDId~--d~e~r~EL~k~sG~~TVPqIFInGk~IGG~DeL~el~ 496 (893)
++||+.++||+|.+++.+|..+|++|+.++++. .....+++.+.+...+||++..+|..+.....+.++.
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL 72 (74)
T cd03045 1 IDLYYLPGSPPCRAVLLTAKALGLELNLKEVNLMKGEHLKPEFLKLNPQHTVPTLVDNGFVLWESHAILIYL 72 (74)
T ss_pred CEEEeCCCCCcHHHHHHHHHHcCCCCEEEEecCccCCcCCHHHHhhCcCCCCCEEEECCEEEEcHHHHHHHH
Confidence 369999999999999999999999999998873 3334578888888999999999887777666655543
No 65
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=98.21 E-value=1.5e-06 Score=80.58 Aligned_cols=49 Identities=22% Similarity=0.329 Sum_probs=44.0
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCCCC
Q 002682 427 VILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSA 475 (893)
Q Consensus 427 VvLYTksgCP~CkrAK~lL~e~GI~YeeIDId~d~e~r~EL~k~sG~~T 475 (893)
|+||++++||+|++|+++|+++|++|+++||..++...++|.++.+...
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~~l~~~~~~~~ 49 (105)
T cd02977 1 ITIYGNPNCSTSRKALAWLEEHGIEYEFIDYLKEPPTKEELKELLAKLG 49 (105)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCCcEEEeeccCCCCHHHHHHHHHhcC
Confidence 5799999999999999999999999999999988888888888776544
No 66
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=98.13 E-value=6e-06 Score=71.84 Aligned_cols=68 Identities=24% Similarity=0.236 Sum_probs=59.8
Q ss_pred EEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCCCCcceEEEcCeeecccHhHHHhHh
Q 002682 429 LYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILMGGLSELKALDE 497 (893)
Q Consensus 429 LYTksgCP~CkrAK~lL~e~GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFInGk~IGG~DeL~el~e 497 (893)
+|+.++||||.+++-+|+.+||+|+.++++.... ..++.+.++..+||++..+|..+.+...+.++.+
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~~i~~~~~~v~~~~~-~~~~~~~~p~~~vPvL~~~g~~l~dS~~I~~yL~ 68 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEKGIPYELVPVDPEEK-RPEFLKLNPKGKVPVLVDDGEVLTDSAAIIEYLE 68 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHHTEEEEEEEEBTTST-SHHHHHHSTTSBSSEEEETTEEEESHHHHHHHHH
T ss_pred CCCcCCChHHHHHHHHHHHcCCeEEEeccCcccc-hhHHHhhcccccceEEEECCEEEeCHHHHHHHHH
Confidence 6999999999999999999999999999975433 6778888999999999999999998887776654
No 67
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=98.13 E-value=8.5e-06 Score=70.60 Aligned_cols=55 Identities=20% Similarity=0.190 Sum_probs=44.4
Q ss_pred cEEEEEcCCChhHHHHHHHHHh----cC--CceEEEEcCCChhHHHHHHHHhCCCCcceEEEcCe
Q 002682 426 RVILYTRLGCQESREVRLFLYW----KR--LRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEI 484 (893)
Q Consensus 426 kVvLYTksgCP~CkrAK~lL~e----~G--I~YeeIDId~d~e~r~EL~k~sG~~TVPqIFInGk 484 (893)
.|++|+.+|||+|+.++..|.+ .+ +.+..+|++.+++ +.+..|..++|+++++|+
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~----~~~~~~v~~vPt~~~~g~ 62 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQ----KAMEYGIMAVPAIVINGD 62 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHH----HHHHcCCccCCEEEECCE
Confidence 4899999999999999999864 34 5677888876654 334578999999999997
No 68
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=98.10 E-value=9.1e-06 Score=68.91 Aligned_cols=69 Identities=17% Similarity=0.241 Sum_probs=57.2
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCC--hhHHHHHHHHhCCCCcceEEEcCeeecccHhHHHh
Q 002682 427 VILYTRLGCQESREVRLFLYWKRLRYVEINIDVY--PSRKMELEKFAGSSAVPKVFFNEILMGGLSELKAL 495 (893)
Q Consensus 427 VvLYTksgCP~CkrAK~lL~e~GI~YeeIDId~d--~e~r~EL~k~sG~~TVPqIFInGk~IGG~DeL~el 495 (893)
+++|+.+.||+|.+++.+|..+|++|+.++|+.. .....++.+.+...++|++..+|..+.....+.++
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~i~es~aI~~y 71 (73)
T cd03056 1 MKLYGFPLSGNCYKVRLLLALLGIPYEWVEVDILKGETRTPEFLALNPNGEVPVLELDGRVLAESNAILVY 71 (73)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCCCcEEEEecCCCcccCCHHHHHhCCCCCCCEEEECCEEEEcHHHHHHH
Confidence 3699999999999999999999999999998742 23446777888889999999999888776665544
No 69
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=98.04 E-value=6.6e-06 Score=80.14 Aligned_cols=46 Identities=24% Similarity=0.358 Sum_probs=42.7
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhC
Q 002682 427 VILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAG 472 (893)
Q Consensus 427 VvLYTksgCP~CkrAK~lL~e~GI~YeeIDId~d~e~r~EL~k~sG 472 (893)
|+||+.++||+|++|+++|+++||+|+++||..++..+++|.++..
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~gi~~~~idi~~~~~~~~eL~~~l~ 47 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEHDIPFTERNIFSSPLTIDEIKQILR 47 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCcEEeeccCChhhHHHHHHHHH
Confidence 8999999999999999999999999999999999988888887654
No 70
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=98.03 E-value=2.3e-05 Score=69.97 Aligned_cols=53 Identities=26% Similarity=0.411 Sum_probs=44.2
Q ss_pred cEEEEEcCCChhHHHHHHHHHhc----CCceEEEEcCCChhHHHHHHHHhCCCCcceEEEcC
Q 002682 426 RVILYTRLGCQESREVRLFLYWK----RLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNE 483 (893)
Q Consensus 426 kVvLYTksgCP~CkrAK~lL~e~----GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFInG 483 (893)
+|++||+++|+.|..|+.+|... ++.++.+||+.+++ +.+.+|. .+|++.++|
T Consensus 1 ~l~l~~k~~C~LC~~a~~~L~~~~~~~~~~l~~vDI~~d~~----l~~~Y~~-~IPVl~~~~ 57 (81)
T PF05768_consen 1 TLTLYTKPGCHLCDEAKEILEEVAAEFPFELEEVDIDEDPE----LFEKYGY-RIPVLHIDG 57 (81)
T ss_dssp -EEEEE-SSSHHHHHHHHHHHHCCTTSTCEEEEEETTTTHH----HHHHSCT-STSEEEETT
T ss_pred CEEEEcCCCCChHHHHHHHHHHHHhhcCceEEEEECCCCHH----HHHHhcC-CCCEEEEcC
Confidence 48999999999999999999964 46689999997766 5567774 899999999
No 71
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=98.02 E-value=1.2e-05 Score=70.80 Aligned_cols=54 Identities=17% Similarity=0.185 Sum_probs=43.9
Q ss_pred EEEEEcCCChhHHHH----HHHHHhcCCceEEEEcCCChhHHHHHHHHhCCCCcceEEEcCeee
Q 002682 427 VILYTRLGCQESREV----RLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILM 486 (893)
Q Consensus 427 VvLYTksgCP~CkrA----K~lL~e~GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFInGk~I 486 (893)
|.+|+ +|||.|+.+ +++++++|+.++.++|+..++ .. ..|..++|+|++||+.+
T Consensus 3 i~~~a-~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~~~~~----a~-~~~v~~vPti~i~G~~~ 60 (76)
T TIGR00412 3 IQIYG-TGCANCQMTEKNVKKAVEELGIDAEFEKVTDMNE----IL-EAGVTATPGVAVDGELV 60 (76)
T ss_pred EEEEC-CCCcCHHHHHHHHHHHHHHcCCCeEEEEeCCHHH----HH-HcCCCcCCEEEECCEEE
Confidence 88888 999999999 668888999999999973222 22 36999999999999665
No 72
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=97.91 E-value=2e-05 Score=71.90 Aligned_cols=58 Identities=22% Similarity=0.344 Sum_probs=48.9
Q ss_pred cEEEEEcCCChhHHHHHHHHHhc-----CCceEEEEcCCChhHHHHHHHHhCCCCcceEEEcCeeec
Q 002682 426 RVILYTRLGCQESREVRLFLYWK-----RLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILMG 487 (893)
Q Consensus 426 kVvLYTksgCP~CkrAK~lL~e~-----GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFInGk~IG 487 (893)
.|.+|+.+|||+|..++.++.+. ++.|..+|++..++ +.+.+|...+|.+++||+.++
T Consensus 15 ~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~~~~e----~a~~~~V~~vPt~vidG~~~~ 77 (89)
T cd03026 15 NFETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDGALFQD----EVEERGIMSVPAIFLNGELFG 77 (89)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEhHhCHH----HHHHcCCccCCEEEECCEEEE
Confidence 48899999999999999988764 78899999986654 445679999999999998764
No 73
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=97.89 E-value=1.9e-05 Score=75.04 Aligned_cols=46 Identities=20% Similarity=0.309 Sum_probs=41.5
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhC
Q 002682 427 VILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAG 472 (893)
Q Consensus 427 VvLYTksgCP~CkrAK~lL~e~GI~YeeIDId~d~e~r~EL~k~sG 472 (893)
|+||+.++||+|++|+++|+++|++|+.+|+..++..++++.++..
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~el~~l~~ 46 (117)
T TIGR01617 1 IKVYGSPNCTTCKKARRWLEANGIEYQFIDIGEDGPTREELLDILS 46 (117)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCceEEEecCCChhhHHHHHHHHH
Confidence 5799999999999999999999999999999988888888876553
No 74
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=97.89 E-value=2e-05 Score=74.74 Aligned_cols=46 Identities=26% Similarity=0.412 Sum_probs=42.0
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhC
Q 002682 427 VILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAG 472 (893)
Q Consensus 427 VvLYTksgCP~CkrAK~lL~e~GI~YeeIDId~d~e~r~EL~k~sG 472 (893)
|+||+.++|++|++|+++|+++||+|+.+|+..++..+.+|.++..
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~gi~~~~idi~~~~~~~~el~~~~~ 47 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEHQIPFEERNLFKQPLTKEELKEILS 47 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCceEEEecCCCcchHHHHHHHHH
Confidence 7899999999999999999999999999999988887888877654
No 75
>PRK12559 transcriptional regulator Spx; Provisional
Probab=97.81 E-value=2.9e-05 Score=75.86 Aligned_cols=46 Identities=28% Similarity=0.421 Sum_probs=42.4
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhC
Q 002682 427 VILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAG 472 (893)
Q Consensus 427 VvLYTksgCP~CkrAK~lL~e~GI~YeeIDId~d~e~r~EL~k~sG 472 (893)
|+||+.++|++|++|+++|+++||+|+++|+..++...++|..+..
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~gi~~~~~di~~~~~s~~el~~~l~ 47 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEENQIDYTEKNIVSNSMTVDELKSILR 47 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCeEEEEeeCCcCCHHHHHHHHH
Confidence 8899999999999999999999999999999988888888877654
No 76
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=97.77 E-value=3.7e-05 Score=75.22 Aligned_cols=45 Identities=24% Similarity=0.411 Sum_probs=41.3
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHh
Q 002682 427 VILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFA 471 (893)
Q Consensus 427 VvLYTksgCP~CkrAK~lL~e~GI~YeeIDId~d~e~r~EL~k~s 471 (893)
|+||+.++|++|++|+++|+++||+|+++|+..++..+++|..+.
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~~i~~~~~d~~~~~~s~~eL~~~l 46 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNAHQLSYKEQNLGKEPLTKEEILAIL 46 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHHcCCCeEEEECCCCCCCHHHHHHHH
Confidence 889999999999999999999999999999998887777777764
No 77
>PHA02125 thioredoxin-like protein
Probab=97.75 E-value=8.6e-05 Score=65.01 Aligned_cols=55 Identities=18% Similarity=0.309 Sum_probs=41.6
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCCCCcceEEEcCeee
Q 002682 427 VILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILM 486 (893)
Q Consensus 427 VvLYTksgCP~CkrAK~lL~e~GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFInGk~I 486 (893)
|++|+.+||++|+.++.+|++. .|+.++|+.+.. .++.+..+..++|++. +|+.+
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~--~~~~~~vd~~~~--~~l~~~~~v~~~PT~~-~g~~~ 56 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANV--EYTYVDVDTDEG--VELTAKHHIRSLPTLV-NTSTL 56 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHH--hheEEeeeCCCC--HHHHHHcCCceeCeEE-CCEEE
Confidence 8999999999999999999865 455555554332 2566677999999987 66544
No 78
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=97.73 E-value=4e-05 Score=72.10 Aligned_cols=46 Identities=17% Similarity=0.274 Sum_probs=41.5
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhC
Q 002682 427 VILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAG 472 (893)
Q Consensus 427 VvLYTksgCP~CkrAK~lL~e~GI~YeeIDId~d~e~r~EL~k~sG 472 (893)
|+||+.++|+.|++|+++|+++|++|+++|+..+|...++|..+..
T Consensus 1 i~iy~~~~C~~crka~~~L~~~~i~~~~~di~~~p~s~~eL~~~l~ 46 (105)
T cd03035 1 ITLYGIKNCDTVKKARKWLEARGVAYTFHDYRKDGLDAATLERWLA 46 (105)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCCeEEEecccCCCCHHHHHHHHH
Confidence 5799999999999999999999999999999988877777777653
No 79
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=97.71 E-value=0.00012 Score=62.97 Aligned_cols=57 Identities=11% Similarity=0.003 Sum_probs=49.2
Q ss_pred CCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCCCCcceEEEcCeeecccHhHHHhHh
Q 002682 433 LGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILMGGLSELKALDE 497 (893)
Q Consensus 433 sgCP~CkrAK~lL~e~GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFInGk~IGG~DeL~el~e 497 (893)
+.||+|.+++.+|+.+|++|+.++++... .+...+||++..+|+.+.++..+.++.+
T Consensus 14 s~sp~~~~v~~~L~~~~i~~~~~~~~~~~--------~~p~g~vP~l~~~g~~l~es~~I~~yL~ 70 (72)
T cd03054 14 SLSPECLKVETYLRMAGIPYEVVFSSNPW--------RSPTGKLPFLELNGEKIADSEKIIEYLK 70 (72)
T ss_pred CCCHHHHHHHHHHHhCCCceEEEecCCcc--------cCCCcccCEEEECCEEEcCHHHHHHHHh
Confidence 38999999999999999999999997532 4667799999999999999888777654
No 80
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=97.69 E-value=0.00011 Score=64.26 Aligned_cols=70 Identities=17% Similarity=0.237 Sum_probs=57.9
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCCh--hHHHHHHHHhCCCCcceEEEcCeeecccHhHHHhH
Q 002682 427 VILYTRLGCQESREVRLFLYWKRLRYVEINIDVYP--SRKMELEKFAGSSAVPKVFFNEILMGGLSELKALD 496 (893)
Q Consensus 427 VvLYTksgCP~CkrAK~lL~e~GI~YeeIDId~d~--e~r~EL~k~sG~~TVPqIFInGk~IGG~DeL~el~ 496 (893)
+++|..++||+|.+++-+|.++|++|+.+.++... ....++.++++..+||++..||..+.....+.++.
T Consensus 1 ~~ly~~~~s~~s~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~inP~g~vP~L~~~g~~l~Es~aI~~yL 72 (73)
T cd03052 1 LVLYHWTQSFSSQKVRLVIAEKGLRCEEYDVSLPLSEHNEPWFMRLNPTGEVPVLIHGDNIICDPTQIIDYL 72 (73)
T ss_pred CEEecCCCCccHHHHHHHHHHcCCCCEEEEecCCcCccCCHHHHHhCcCCCCCEEEECCEEEEcHHHHHHHh
Confidence 47999999999999999999999999998886432 23457889999999999999998887776665543
No 81
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=97.68 E-value=0.00016 Score=62.19 Aligned_cols=71 Identities=15% Similarity=0.073 Sum_probs=58.8
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCCh--hHHHHHHHHhCCCCcceEEEcCeeecccHhHHHhHh
Q 002682 427 VILYTRLGCQESREVRLFLYWKRLRYVEINIDVYP--SRKMELEKFAGSSAVPKVFFNEILMGGLSELKALDE 497 (893)
Q Consensus 427 VvLYTksgCP~CkrAK~lL~e~GI~YeeIDId~d~--e~r~EL~k~sG~~TVPqIFInGk~IGG~DeL~el~e 497 (893)
+++|+.+.||+|.+++-+|..+|++|+.+.++... ....++.+.+...+||++..+|..+.....+.++..
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~P~~~vP~l~~~g~~l~es~aI~~yL~ 74 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEKGVDYELVPVDLTKGEHKSPEHLARNPFGQIPALEDGDLKLFESRAITRYLA 74 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHcCCCcEEEEeCccccccCCHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHHh
Confidence 67999999999999999999999999998887432 234567888899999999998888877777666654
No 82
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=97.66 E-value=0.00015 Score=62.44 Aligned_cols=70 Identities=16% Similarity=0.074 Sum_probs=55.1
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhC-CCCcceEEEcCeeecccHhHHHhHh
Q 002682 427 VILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAG-SSAVPKVFFNEILMGGLSELKALDE 497 (893)
Q Consensus 427 VvLYTksgCP~CkrAK~lL~e~GI~YeeIDId~d~e~r~EL~k~sG-~~TVPqIFInGk~IGG~DeL~el~e 497 (893)
+++|+.+.||+|.+++.+|..+|++|+.+.++.. ....++.+.+. ..+||.+..+|..+.....+.++.+
T Consensus 1 ~~Ly~~~~sp~~~~v~~~l~~~gl~~~~~~~~~~-~~~~~~~~~~p~~~~vP~l~~~~~~l~eS~aI~~yL~ 71 (74)
T cd03058 1 VKLLGAWASPFVLRVRIALALKGVPYEYVEEDLG-NKSELLLASNPVHKKIPVLLHNGKPICESLIIVEYID 71 (74)
T ss_pred CEEEECCCCchHHHHHHHHHHcCCCCEEEEeCcc-cCCHHHHHhCCCCCCCCEEEECCEEeehHHHHHHHHH
Confidence 3589999999999999999999999999887643 22345667776 4899999988887777766665543
No 83
>cd04435 DEP_fRom2 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in fungal RhoGEF (GDP/GTP exchange factor) Rom2-like proteins. Rom2-like proteins share a common domain architecture, containing, beside the RhoGEF domain, a DEP, a PH (pleckstrin homology) and a CNH domain. Rom2, a yeast GEF for Rho1 and Rho2, is involved in mediating stress response via the Ras-cAMP pathway and also plays a role in mediating resistance to sphingolipid disturbances.
Probab=97.64 E-value=6e-05 Score=67.94 Aligned_cols=79 Identities=25% Similarity=0.463 Sum_probs=69.5
Q ss_pred HHHHHHhccCCceeeccccceeeecccccchhHHHHHHhh-cccCHHHHHHHHHHHHhcccccccccccccccCC-ceEE
Q 002682 537 LALIVLKMKENVVVKDRFYKMRRFTNCFLGSEAVNFLSED-QYLEREEAVEFGRKLASKLFFRHVLDENLFEDGN-HLYR 614 (893)
Q Consensus 537 La~iv~~mk~gi~IKDRr~~LrtYk~CF~GsELVDWLie~-~v~sReEAv~lGQ~Lld~glI~hV~~~~~F~Dg~-~LYR 614 (893)
|..+...++..|+..+|....-.|++.|+|.++|+-|..- ...+|.=|+.+|+.|-.+.++|.|+-+|.+.|+. -.|+
T Consensus 2 LS~VA~~fr~~I~~~~~~K~gl~Y~~aFtG~~aV~~i~~ii~t~DRnlALllgRsLdaQkfFhdV~y~hrLrDs~~evY~ 81 (82)
T cd04435 2 LSRVALQLRDKIPLGDHTKDGITYRNSFTGKDAVTTIQGIIRTSDRNLALLLGRSLDAQKFFHDVTYDHRLRDSVDEVYR 81 (82)
T ss_pred hHHHHHHHHHhccccccccCCeecCcccCcHHHHHHHHHHHhcccHHHHHHHHHHHHHhHhhhhcccCCccccChhhhhc
Confidence 3456677788899999999999999999999999999886 5678999999999999999999999889999884 6777
Q ss_pred e
Q 002682 615 F 615 (893)
Q Consensus 615 F 615 (893)
|
T Consensus 82 F 82 (82)
T cd04435 82 F 82 (82)
T ss_pred C
Confidence 6
No 84
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=97.58 E-value=9.9e-05 Score=70.49 Aligned_cols=46 Identities=20% Similarity=0.300 Sum_probs=42.0
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhC
Q 002682 427 VILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAG 472 (893)
Q Consensus 427 VvLYTksgCP~CkrAK~lL~e~GI~YeeIDId~d~e~r~EL~k~sG 472 (893)
|+||+.+.|+.|++|+++|+++|++|+++|+..++.-+++|..+..
T Consensus 2 i~iy~~p~C~~crkA~~~L~~~gi~~~~~d~~~~p~s~~eL~~~l~ 47 (113)
T cd03033 2 IIFYEKPGCANNARQKALLEAAGHEVEVRDLLTEPWTAETLRPFFG 47 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCCcEEeehhcCCCCHHHHHHHHH
Confidence 8899999999999999999999999999999988877888887653
No 85
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=97.50 E-value=0.00027 Score=60.65 Aligned_cols=68 Identities=10% Similarity=-0.038 Sum_probs=54.3
Q ss_pred EEEEcCCChhHHHHHHHHHh--cCCceEEEEcCCChhHHHHHHHHhCCCCcceEEE-cCeeecccHhHHHhH
Q 002682 428 ILYTRLGCQESREVRLFLYW--KRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF-NEILMGGLSELKALD 496 (893)
Q Consensus 428 vLYTksgCP~CkrAK~lL~e--~GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFI-nGk~IGG~DeL~el~ 496 (893)
++|+.+.||+|.+++.+|.. +|++|+.+.++.. ....++.+.++..+||++.. +|..+.....+.++.
T Consensus 2 ~Ly~~~~s~~~~~~~~~l~~~~~~i~~~~~~~~~~-~~~~~~~~~~p~~~vP~l~~~~g~~l~es~aI~~yL 72 (73)
T cd03049 2 KLLYSPTSPYVRKVRVAAHETGLGDDVELVLVNPW-SDDESLLAVNPLGKIPALVLDDGEALFDSRVICEYL 72 (73)
T ss_pred EEecCCCCcHHHHHHHHHHHhCCCCCcEEEEcCcc-cCChHHHHhCCCCCCCEEEECCCCEEECHHHHHhhh
Confidence 68999999999999999999 8999999998642 22345677888899999985 777777766665543
No 86
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=97.46 E-value=0.00033 Score=59.50 Aligned_cols=69 Identities=17% Similarity=0.264 Sum_probs=56.2
Q ss_pred EEEEcCCChhHHHHHHHHHhcCCceEEEEcCCCh--hHHHHHHHHhCCCCcceEEEcCeeecccHhHHHhH
Q 002682 428 ILYTRLGCQESREVRLFLYWKRLRYVEINIDVYP--SRKMELEKFAGSSAVPKVFFNEILMGGLSELKALD 496 (893)
Q Consensus 428 vLYTksgCP~CkrAK~lL~e~GI~YeeIDId~d~--e~r~EL~k~sG~~TVPqIFInGk~IGG~DeL~el~ 496 (893)
++|+.+.|++|.+++.+|..+|++|+.+.++..+ ....++.+.+...+||++..+|..+.....+.++.
T Consensus 2 ~L~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL 72 (73)
T cd03042 2 ILYSYFRSSASYRVRIALNLKGLDYEYVPVNLLKGEQLSPAYRALNPQGLVPTLVIDGLVLTQSLAIIEYL 72 (73)
T ss_pred EEecCCCCcchHHHHHHHHHcCCCCeEEEecCccCCcCChHHHHhCCCCCCCEEEECCEEEEcHHHHHHHh
Confidence 6899999999999999999999999998886432 23456778888999999999988887766665543
No 87
>KOG4023 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.44 E-value=0.00021 Score=66.88 Aligned_cols=81 Identities=20% Similarity=0.318 Sum_probs=67.8
Q ss_pred cEEEEEcCCChhH------HHHHHHHHhcCCceEEEEcCCChhHHHHH--------HHHhCCCCcceEEEcCeeecccHh
Q 002682 426 RVILYTRLGCQES------REVRLFLYWKRLRYVEINIDVYPSRKMEL--------EKFAGSSAVPKVFFNEILMGGLSE 491 (893)
Q Consensus 426 kVvLYTksgCP~C------krAK~lL~e~GI~YeeIDId~d~e~r~EL--------~k~sG~~TVPqIFInGk~IGG~De 491 (893)
.|.+|+++.-+.- ..+..+|+...|.|+++||......+.++ +-..|.+..||||-++++.|+|+.
T Consensus 3 ~irvyvasssg~~eik~kqqevv~~Ld~~ki~fk~~di~~~e~~~~~~~~~~~~e~r~~~GnplPPqifn~d~Y~Gdye~ 82 (108)
T KOG4023|consen 3 VIRVYVASSSGSTEIKKKQQEVVRFLDANKIGFKEIDITAYEEVRQWMDNNVPDEKRPLNGNPLPPQIFNGDQYCGDYEL 82 (108)
T ss_pred ceEEEEecCCCchHHHhhhhhhhhhhhcccCCcceeeccchhhhHHHHHhcCChhhcCCCCCCCCcccccCccccccHHH
Confidence 3888998876654 46778999999999999998776665544 445689999999999999999999
Q ss_pred HHHhHhcCcchHHHH
Q 002682 492 LKALDESGKLDEKIE 506 (893)
Q Consensus 492 L~el~esGeL~~lLk 506 (893)
+.+..+++.|.+.|+
T Consensus 83 F~ea~E~ntl~eFL~ 97 (108)
T KOG4023|consen 83 FFEAVEQNTLQEFLG 97 (108)
T ss_pred HHHHHHHHHHHHHHc
Confidence 999999888888884
No 88
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=97.43 E-value=0.00017 Score=68.01 Aligned_cols=52 Identities=21% Similarity=0.340 Sum_probs=41.5
Q ss_pred cEEEE-EcCCChhHHHHHHHHHhcC-----CceEEEEcCCChhHHHHHHHHhCCCCcceEEE
Q 002682 426 RVILY-TRLGCQESREVRLFLYWKR-----LRYVEINIDVYPSRKMELEKFAGSSAVPKVFF 481 (893)
Q Consensus 426 kVvLY-TksgCP~CkrAK~lL~e~G-----I~YeeIDId~d~e~r~EL~k~sG~~TVPqIFI 481 (893)
.|+|| +.+|||+|+.++.+|.+.. +.|..+|++.++ ++.+.+|..++|++++
T Consensus 24 ~vvv~f~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d~~~----~l~~~~~v~~vPt~~i 81 (113)
T cd02975 24 DLVVFSSKEGCQYCEVTKQLLEELSELSDKLKLEIYDFDEDK----EKAEKYGVERVPTTIF 81 (113)
T ss_pred EEEEEeCCCCCCChHHHHHHHHHHHHhcCceEEEEEeCCcCH----HHHHHcCCCcCCEEEE
Confidence 35555 7899999999999997643 678888988765 3556789999999999
No 89
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=97.39 E-value=0.00045 Score=60.82 Aligned_cols=54 Identities=19% Similarity=0.209 Sum_probs=40.5
Q ss_pred cEEEEEcCCChhHHHHHHH----HHhcCCceEEEEcCCChhHHHHHHHHhCCCCcceEEEcCee
Q 002682 426 RVILYTRLGCQESREVRLF----LYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEIL 485 (893)
Q Consensus 426 kVvLYTksgCP~CkrAK~l----L~e~GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFInGk~ 485 (893)
+|.+ ..++||+|..+..+ +...|+.++.+++. + .+++ ..+|..++|.++|||+.
T Consensus 2 ~I~v-~~~~C~~C~~~~~~~~~~~~~~~i~~ei~~~~-~---~~~~-~~ygv~~vPalvIng~~ 59 (76)
T PF13192_consen 2 KIKV-FSPGCPYCPELVQLLKEAAEELGIEVEIIDIE-D---FEEI-EKYGVMSVPALVINGKV 59 (76)
T ss_dssp EEEE-ECSSCTTHHHHHHHHHHHHHHTTEEEEEEETT-T---HHHH-HHTT-SSSSEEEETTEE
T ss_pred EEEE-eCCCCCCcHHHHHHHHHHHHhcCCeEEEEEcc-C---HHHH-HHcCCCCCCEEEECCEE
Confidence 3778 56779999977665 45679999999983 2 2334 56899999999999975
No 90
>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w
Probab=97.37 E-value=0.00063 Score=58.98 Aligned_cols=70 Identities=10% Similarity=-0.031 Sum_probs=58.4
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCCCCcceEEEcCeeecccHhHHHhHh
Q 002682 427 VILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILMGGLSELKALDE 497 (893)
Q Consensus 427 VvLYTksgCP~CkrAK~lL~e~GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFInGk~IGG~DeL~el~e 497 (893)
+++|..+.|+.|.+++-+|..+|++|+.+.++. .....++...+...+||++..+|..+.....+..+..
T Consensus 2 ~~Ly~~~~~~~~~~v~~~L~~~~i~~e~~~v~~-~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~ 71 (73)
T cd03076 2 YTLTYFPVRGRAEAIRLLLADQGISWEEERVTY-EEWQESLKPKMLFGQLPCFKDGDLTLVQSNAILRHLG 71 (73)
T ss_pred cEEEEeCCcchHHHHHHHHHHcCCCCEEEEecH-HHhhhhhhccCCCCCCCEEEECCEEEEcHHHHHHHHh
Confidence 679999999999999999999999999998864 2334467777788999999999998888777766653
No 91
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=97.36 E-value=0.00048 Score=59.05 Aligned_cols=70 Identities=11% Similarity=0.029 Sum_probs=56.2
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCCCCcceEEEcCeeecccHhHHHhH
Q 002682 427 VILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILMGGLSELKALD 496 (893)
Q Consensus 427 VvLYTksgCP~CkrAK~lL~e~GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFInGk~IGG~DeL~el~ 496 (893)
+++|..+.|+.|.+++-+|..+|++|+.+.++.......++.+.+...+||++..+|..+.....+.++.
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~l~es~aI~~yL 70 (72)
T cd03039 1 YKLTYFNIRGRGEPIRLLLADAGVEYEDVRITYEEWPELDLKPTLPFGQLPVLEIDGKKLTQSNAILRYL 70 (72)
T ss_pred CEEEEEcCcchHHHHHHHHHHCCCCcEEEEeCHHHhhhhhhccCCcCCCCCEEEECCEEEEecHHHHHHh
Confidence 3689999999999999999999999999988643222234667778899999999998887776666554
No 92
>cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele
Probab=97.30 E-value=0.00079 Score=58.59 Aligned_cols=63 Identities=16% Similarity=0.062 Sum_probs=53.1
Q ss_pred EEEEEcC-------CChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCCCCcceEEEcCeeecccHhHHHhHh
Q 002682 427 VILYTRL-------GCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILMGGLSELKALDE 497 (893)
Q Consensus 427 VvLYTks-------gCP~CkrAK~lL~e~GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFInGk~IGG~DeL~el~e 497 (893)
++||..+ .||+|.+++.+|+.+|++|+.+.++. .+.++..+||++..+|+.+.+...+.++.+
T Consensus 2 ~~L~~~~~~~~~~~~sp~~~~v~~~L~~~gi~~~~~~~~~--------~~~~p~g~vPvl~~~g~~l~eS~~I~~yL~ 71 (75)
T cd03080 2 ITLYQFPRAFGVPSLSPFCLKVETFLRMAGIPYENKFGGL--------AKRSPKGKLPFIELNGEKIADSELIIDHLE 71 (75)
T ss_pred EEEEecCCCCCCCCCCHHHHHHHHHHHHCCCCcEEeecCc--------ccCCCCCCCCEEEECCEEEcCHHHHHHHHH
Confidence 5788888 46999999999999999999988863 245678999999999999988887777654
No 93
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=97.28 E-value=0.00087 Score=58.72 Aligned_cols=70 Identities=17% Similarity=0.155 Sum_probs=56.1
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCceEEEEcCC--ChhHHHHHHHHhCCCCcceEEEc---CeeecccHhHHHhHh
Q 002682 427 VILYTRLGCQESREVRLFLYWKRLRYVEINIDV--YPSRKMELEKFAGSSAVPKVFFN---EILMGGLSELKALDE 497 (893)
Q Consensus 427 VvLYTksgCP~CkrAK~lL~e~GI~YeeIDId~--d~e~r~EL~k~sG~~TVPqIFIn---Gk~IGG~DeL~el~e 497 (893)
+++|+.+. |+|.+++-+|..+|++|+.+.++. ......++.+.+...+||++..+ |..+.....+.++..
T Consensus 2 ~~Ly~~~~-~~~~~v~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~g~~l~eS~aI~~yL~ 76 (81)
T cd03048 2 ITLYTHGT-PNGFKVSIMLEELGLPYEIHPVDISKGEQKKPEFLKINPNGRIPAIVDHNGTPLTVFESGAILLYLA 76 (81)
T ss_pred eEEEeCCC-CChHHHHHHHHHcCCCcEEEEecCcCCcccCHHHHHhCcCCCCCEEEeCCCCceEEEcHHHHHHHHH
Confidence 68999886 999999999999999999888763 23445678888889999999887 677776666655543
No 94
>PRK10387 glutaredoxin 2; Provisional
Probab=97.27 E-value=0.0007 Score=68.80 Aligned_cols=68 Identities=15% Similarity=0.102 Sum_probs=52.1
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCCCCcceEE-EcCeeecccHhHHHhH
Q 002682 427 VILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVF-FNEILMGGLSELKALD 496 (893)
Q Consensus 427 VvLYTksgCP~CkrAK~lL~e~GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIF-InGk~IGG~DeL~el~ 496 (893)
+++|+.+.||+|.+++-+|..+||+|+.++++..... .. .+.++..+||++. .+|..+.....+..+.
T Consensus 1 ~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~~~~~~~~-~~-~~~~p~~~VPvL~~~~g~~l~eS~aI~~yL 69 (210)
T PRK10387 1 MKLYIYDHCPFCVKARMIFGLKNIPVELIVLANDDEA-TP-IRMIGQKQVPILQKDDGSYMPESLDIVHYI 69 (210)
T ss_pred CEEEeCCCCchHHHHHHHHHHcCCCeEEEEcCCCchh-hH-HHhcCCcccceEEecCCeEecCHHHHHHHH
Confidence 3699999999999999999999999999998644322 22 3566788999994 5777777665554444
No 95
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=97.27 E-value=0.00061 Score=70.39 Aligned_cols=68 Identities=15% Similarity=0.083 Sum_probs=54.1
Q ss_pred EEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCCCCcceEE-EcCeeecccHhHHHhHh
Q 002682 428 ILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVF-FNEILMGGLSELKALDE 497 (893)
Q Consensus 428 vLYTksgCP~CkrAK~lL~e~GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIF-InGk~IGG~DeL~el~e 497 (893)
++|+...||+|.+++-+|..+|++|+.+++..... .. ..+.++..+||++. .||..+++...+.++..
T Consensus 1 ~Ly~~~~sp~~~kvr~~L~~~gl~~e~~~~~~~~~-~~-~~~~np~g~vP~l~~~~g~~l~es~~I~~yL~ 69 (209)
T TIGR02182 1 KLYIYDHCPFCVRARMIFGLKNIPVEKHVLLNDDE-ET-PIRMIGAKQVPILQKDDGRAMPESLDIVAYFD 69 (209)
T ss_pred CeecCCCCChHHHHHHHHHHcCCCeEEEECCCCcc-hh-HHHhcCCCCcceEEeeCCeEeccHHHHHHHHH
Confidence 47999999999999999999999999998864432 12 25667889999997 78888888766665544
No 96
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=97.25 E-value=0.00043 Score=66.71 Aligned_cols=45 Identities=22% Similarity=0.373 Sum_probs=41.6
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHh
Q 002682 427 VILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFA 471 (893)
Q Consensus 427 VvLYTksgCP~CkrAK~lL~e~GI~YeeIDId~d~e~r~EL~k~s 471 (893)
|+||..+.|..|++|+.||+++||+|+++|+...+.-+++|.++.
T Consensus 3 itiy~~p~C~t~rka~~~L~~~gi~~~~~~y~~~~~s~~eL~~~l 47 (117)
T COG1393 3 ITIYGNPNCSTCRKALAWLEEHGIEYTFIDYLKTPPSREELKKIL 47 (117)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCcEEEEeecCCCCHHHHHHHH
Confidence 999999999999999999999999999999998887788887764
No 97
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=97.24 E-value=0.00087 Score=62.06 Aligned_cols=64 Identities=14% Similarity=0.261 Sum_probs=52.5
Q ss_pred CCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCCCCcceEEEcCeeecccHhHHHhHh
Q 002682 433 LGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILMGGLSELKALDE 497 (893)
Q Consensus 433 sgCP~CkrAK~lL~e~GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFInGk~IGG~DeL~el~e 497 (893)
..||||++++-.|..+||+|+.++|+.... -+.+.+++....||++..+|..|.....+.++.+
T Consensus 20 g~cpf~~rvrl~L~eKgi~ye~~~vd~~~~-p~~~~~~nP~g~vPvL~~~~~~i~eS~~I~eYLd 83 (91)
T cd03061 20 GNCPFCQRLFMVLWLKGVVFNVTTVDMKRK-PEDLKDLAPGTQPPFLLYNGEVKTDNNKIEEFLE 83 (91)
T ss_pred CCChhHHHHHHHHHHCCCceEEEEeCCCCC-CHHHHHhCCCCCCCEEEECCEEecCHHHHHHHHH
Confidence 579999999999999999999998874321 2457888888999999999998887777666654
No 98
>PRK10026 arsenate reductase; Provisional
Probab=97.23 E-value=0.00051 Score=68.29 Aligned_cols=47 Identities=19% Similarity=0.222 Sum_probs=42.4
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhC
Q 002682 426 RVILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAG 472 (893)
Q Consensus 426 kVvLYTksgCP~CkrAK~lL~e~GI~YeeIDId~d~e~r~EL~k~sG 472 (893)
.|+||+.+.|..|++|++||+++|++|+++|+-.++...++|..+..
T Consensus 3 ~i~iY~~p~Cst~RKA~~wL~~~gi~~~~~d~~~~ppt~~eL~~~l~ 49 (141)
T PRK10026 3 NITIYHNPACGTSRNTLEMIRNSGTEPTIIHYLETPPTRDELVKLIA 49 (141)
T ss_pred EEEEEeCCCCHHHHHHHHHHHHCCCCcEEEeeeCCCcCHHHHHHHHH
Confidence 69999999999999999999999999999999888877777777654
No 99
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=97.14 E-value=0.00067 Score=60.08 Aligned_cols=64 Identities=22% Similarity=0.209 Sum_probs=50.5
Q ss_pred CCChhHHHHHHHHHhcCCceEEEEcCCC--hhHHHHHHHHhCCCCcceEEEc-CeeecccHhHHHhHh
Q 002682 433 LGCQESREVRLFLYWKRLRYVEINIDVY--PSRKMELEKFAGSSAVPKVFFN-EILMGGLSELKALDE 497 (893)
Q Consensus 433 sgCP~CkrAK~lL~e~GI~YeeIDId~d--~e~r~EL~k~sG~~TVPqIFIn-Gk~IGG~DeL~el~e 497 (893)
++||+|.+++-+|..+|++|+.+.++.. .....++ +.++...||++..+ |..+.+...+.++.+
T Consensus 14 ~~Sp~~~kv~~~L~~~~i~~~~~~~~~~~~~~~~~~~-~~~p~~~vP~L~~~~~~~l~eS~aI~~yL~ 80 (84)
T cd03038 14 AFSPNVWKTRLALNHKGLEYKTVPVEFPDIPPILGEL-TSGGFYTVPVIVDGSGEVIGDSFAIAEYLE 80 (84)
T ss_pred CcCChhHHHHHHHHhCCCCCeEEEecCCCcccccccc-cCCCCceeCeEEECCCCEEeCHHHHHHHHH
Confidence 6899999999999999999998887632 2223344 56778999999998 888888877776654
No 100
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=97.11 E-value=0.0015 Score=50.50 Aligned_cols=57 Identities=21% Similarity=0.311 Sum_probs=46.1
Q ss_pred EEEEEcCCChhHHHHHHHHH-----hcCCceEEEEcCCChhHHHHHHHHhCCCCcceEEEcCe
Q 002682 427 VILYTRLGCQESREVRLFLY-----WKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEI 484 (893)
Q Consensus 427 VvLYTksgCP~CkrAK~lL~-----e~GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFInGk 484 (893)
|++|..++|++|.+++..|. ..++.|..++++........ ....+..++|++++.+.
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~P~~~~~~~ 62 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAELALLNKGVKFEAVDVDEDPALEKE-LKRYGVGGVPTLVVFGP 62 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHHHhhCCCcEEEEEEcCCChHHhhH-HHhCCCccccEEEEEeC
Confidence 46899999999999999999 67899999999877664443 23467789999998763
No 101
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=97.08 E-value=0.002 Score=61.97 Aligned_cols=63 Identities=11% Similarity=0.039 Sum_probs=43.6
Q ss_pred EEEEEcCCChhHHHHHHHH----HhcCCceEEEEcCCCh--h-----HHHHHHHHhC----CCCcceEEE--cCeeeccc
Q 002682 427 VILYTRLGCQESREVRLFL----YWKRLRYVEINIDVYP--S-----RKMELEKFAG----SSAVPKVFF--NEILMGGL 489 (893)
Q Consensus 427 VvLYTksgCP~CkrAK~lL----~e~GI~YeeIDId~d~--e-----~r~EL~k~sG----~~TVPqIFI--nGk~IGG~ 489 (893)
|+.|+++|||+|+.+.-.| ++.++++-.+|++.++ + ...++.+..+ ...+|++++ +|+.++..
T Consensus 27 iv~f~~~~Cp~C~~~~P~l~~~~~~~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~i~~~PT~v~~k~Gk~v~~~ 106 (122)
T TIGR01295 27 TFFIGRKTCPYCRKFSGTLSGVVAQTKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTSFMGTPTFVHITDGKQVSVR 106 (122)
T ss_pred EEEEECCCChhHHHHhHHHHHHHHhcCCcEEEEECCCccCcCcccHHHHHHHHHHcCCcccCCCCCEEEEEeCCeEEEEE
Confidence 8889999999999966555 4466889999998543 1 1234444433 445998875 78776544
No 102
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=97.06 E-value=0.002 Score=55.78 Aligned_cols=70 Identities=23% Similarity=0.285 Sum_probs=55.9
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCC--hhHHHHHHHHhCCCCcceEEEcCeeecccHhHHHhH
Q 002682 427 VILYTRLGCQESREVRLFLYWKRLRYVEINIDVY--PSRKMELEKFAGSSAVPKVFFNEILMGGLSELKALD 496 (893)
Q Consensus 427 VvLYTksgCP~CkrAK~lL~e~GI~YeeIDId~d--~e~r~EL~k~sG~~TVPqIFInGk~IGG~DeL~el~ 496 (893)
+++|..+.|++|.+++-+|..+|++|+.+.++.. +....++.+.+...+||++..+|..+....-+..+.
T Consensus 1 ~~ly~~~~s~~~~~v~~~l~~~g~~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~l~eS~aI~~Yl 72 (76)
T cd03050 1 LKLYYDLMSQPSRAVYIFLKLNKIPFEECPIDLRKGEQLTPEFKKINPFGKVPAIVDGDFTLAESVAILRYL 72 (76)
T ss_pred CEEeeCCCChhHHHHHHHHHHcCCCcEEEEecCCCCCcCCHHHHHhCcCCCCCEEEECCEEEEcHHHHHHHH
Confidence 3689999999999999999999999999888642 222356778888999999998887776666555544
No 103
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=97.04 E-value=0.0018 Score=56.26 Aligned_cols=69 Identities=14% Similarity=0.019 Sum_probs=55.5
Q ss_pred EEEEcCCChhHHHHHHHHHhcCCceEEEEcCCCh-hHHHHHHHHhCCCCcceEEEc-CeeecccHhHHHhH
Q 002682 428 ILYTRLGCQESREVRLFLYWKRLRYVEINIDVYP-SRKMELEKFAGSSAVPKVFFN-EILMGGLSELKALD 496 (893)
Q Consensus 428 vLYTksgCP~CkrAK~lL~e~GI~YeeIDId~d~-e~r~EL~k~sG~~TVPqIFIn-Gk~IGG~DeL~el~ 496 (893)
++|+.+.||+|.+++-+|..+|++|+.+.|+... ....++.+++...+||++..+ |..+....-+.++.
T Consensus 2 ~Ly~~~~~~~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~nP~~~vP~L~~~~g~~l~es~aI~~yL 72 (75)
T cd03044 2 TLYTYPGNPRSLKILAAAKYNGLDVEIVDFQPGKENKTPEFLKKFPLGKVPAFEGADGFCLFESNAIAYYV 72 (75)
T ss_pred eEecCCCCccHHHHHHHHHHcCCceEEEecccccccCCHHHHHhCCCCCCCEEEcCCCCEEeeHHHHHHHH
Confidence 5899999999999999999999999999887542 223578888899999999985 77776655555544
No 104
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=97.03 E-value=0.0013 Score=68.57 Aligned_cols=56 Identities=20% Similarity=0.235 Sum_probs=44.7
Q ss_pred cEEEEEcCCChhHHHHHHHHHhc-----CCceEEEEcCCChhHHHHHHHHhCCCCcceEEEcCee
Q 002682 426 RVILYTRLGCQESREVRLFLYWK-----RLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEIL 485 (893)
Q Consensus 426 kVvLYTksgCP~CkrAK~lL~e~-----GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFInGk~ 485 (893)
.|++|+.+|||+|..++.+|++. .|.+..+|++.+++ +.+.+|..++|+++++++.
T Consensus 136 ~I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~~~~~----~~~~~~V~~vPtl~i~~~~ 196 (215)
T TIGR02187 136 RIEVFVTPTCPYCPYAVLMAHKFALANDKILGEMIEANENPD----LAEKYGVMSVPKIVINKGV 196 (215)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhcCceEEEEEeCCCCHH----HHHHhCCccCCEEEEecCC
Confidence 47889999999999999998864 46677788877655 4456799999999998643
No 105
>PRK10853 putative reductase; Provisional
Probab=97.02 E-value=0.00047 Score=66.37 Aligned_cols=45 Identities=22% Similarity=0.256 Sum_probs=41.1
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHh
Q 002682 427 VILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFA 471 (893)
Q Consensus 427 VvLYTksgCP~CkrAK~lL~e~GI~YeeIDId~d~e~r~EL~k~s 471 (893)
|+||+.+.|..|++|+.+|+++|++|+.+|+-.+|...++|.++.
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~d~~k~p~s~~eL~~~l 46 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEAQGIDYRFHDYRVDGLDSELLQGFI 46 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHHcCCCcEEeehccCCcCHHHHHHHH
Confidence 789999999999999999999999999999988877777777765
No 106
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=97.01 E-value=0.0016 Score=66.95 Aligned_cols=59 Identities=17% Similarity=0.158 Sum_probs=50.7
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCCCCcceEEEcCeee
Q 002682 427 VILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILM 486 (893)
Q Consensus 427 VvLYTksgCP~CkrAK~lL~e~GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFInGk~I 486 (893)
+++|+.++||+|.+++-+|..+|++|+.+.|+.. ....++.+++...+||++..+|..+
T Consensus 11 ~~Ly~~~~s~~~~rv~~~L~e~gl~~e~~~v~~~-~~~~~~~~~nP~g~VPvL~~~g~~l 69 (211)
T PRK09481 11 MTLFSGPTDIYSHQVRIVLAEKGVSVEIEQVEKD-NLPQDLIDLNPYQSVPTLVDRELTL 69 (211)
T ss_pred eEEeCCCCChhHHHHHHHHHHCCCCCEEEeCCcc-cCCHHHHHhCCCCCCCEEEECCEEe
Confidence 6899999999999999999999999999998753 2235788888899999999887654
No 107
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=96.99 E-value=0.00092 Score=63.70 Aligned_cols=46 Identities=26% Similarity=0.289 Sum_probs=40.7
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhC
Q 002682 427 VILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAG 472 (893)
Q Consensus 427 VvLYTksgCP~CkrAK~lL~e~GI~YeeIDId~d~e~r~EL~k~sG 472 (893)
|+||+.++|+-|++|+.+|+++|++|+.+|+...|--.+++..+..
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di~~~p~t~~el~~~l~ 46 (114)
T TIGR00014 1 VTIYHNPRCSKSRNTLALLEDKGIEPEVVKYLKNPPTKSELEAIFA 46 (114)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEeccCCCcCHHHHHHHHH
Confidence 5799999999999999999999999999999888766777776653
No 108
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=96.96 E-value=0.0011 Score=62.88 Aligned_cols=45 Identities=18% Similarity=0.244 Sum_probs=39.4
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHh
Q 002682 427 VILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFA 471 (893)
Q Consensus 427 VvLYTksgCP~CkrAK~lL~e~GI~YeeIDId~d~e~r~EL~k~s 471 (893)
|+||+.++|+-|++|+++|+++|++|+++|+...+-..+++..+.
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di~~~~~t~~el~~~l 45 (112)
T cd03034 1 ITIYHNPRCSKSRNALALLEEAGIEPEIVEYLKTPPTAAELRELL 45 (112)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEecccCCcCHHHHHHHH
Confidence 579999999999999999999999999999987776666666654
No 109
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=96.96 E-value=0.0012 Score=64.33 Aligned_cols=47 Identities=19% Similarity=0.250 Sum_probs=42.5
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhC
Q 002682 426 RVILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAG 472 (893)
Q Consensus 426 kVvLYTksgCP~CkrAK~lL~e~GI~YeeIDId~d~e~r~EL~k~sG 472 (893)
.|+||+.+.|..|++|+.+|+++||+|+.+|+..++--+++|..+..
T Consensus 2 ~i~iY~~p~Cst~RKA~~~L~~~gi~~~~~d~~~~p~t~~eL~~~l~ 48 (126)
T TIGR01616 2 TIIFYEKPGCANNARQKAALKASGHDVEVQDILKEPWHADTLRPYFG 48 (126)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHCCCCcEEEeccCCCcCHHHHHHHHH
Confidence 48899999999999999999999999999999888877888887654
No 110
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=96.93 E-value=0.0011 Score=57.26 Aligned_cols=65 Identities=15% Similarity=0.069 Sum_probs=50.5
Q ss_pred CChhHHHHHHHHHhcCCceEEEEcCC--Chh-HHHHHHHHhCCCCcceEEE-cCeeecccHhHHHhHhc
Q 002682 434 GCQESREVRLFLYWKRLRYVEINIDV--YPS-RKMELEKFAGSSAVPKVFF-NEILMGGLSELKALDES 498 (893)
Q Consensus 434 gCP~CkrAK~lL~e~GI~YeeIDId~--d~e-~r~EL~k~sG~~TVPqIFI-nGk~IGG~DeL~el~es 498 (893)
.||||.++.-+|..+|++|+..-+.. .+. ...++.++++..+||++.. +|+.++....+.++.++
T Consensus 1 ~sP~a~Rv~i~l~~~gl~~~~~~v~~~~~~~~~~~~~~~~~p~~~VP~L~~~~g~vi~eS~~I~~yL~~ 69 (70)
T PF13409_consen 1 FSPFAHRVRIALEEKGLPYEIKVVPLIPKGEQKPPEFLALNPRGKVPVLVDPDGTVINESLAILEYLEE 69 (70)
T ss_dssp T-HHHHHHHHHHHHHTGTCEEEEEETTTTBCTTCHBHHHHSTT-SSSEEEETTTEEEESHHHHHHHHHH
T ss_pred CchHhHHHHHHHHHhCCCCEEEEEeeecCccccChhhhccCcCeEEEEEEECCCCEeeCHHHHHHHHhc
Confidence 49999999999999999999876632 222 2257888999999999998 78999888887776653
No 111
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=96.93 E-value=0.0023 Score=58.41 Aligned_cols=55 Identities=15% Similarity=0.102 Sum_probs=41.4
Q ss_pred EEEEEcCCChhHHHHHHHH------Hh---cCCceEEEEcCCChhHHHHHHHHhCCCCcceEEE
Q 002682 427 VILYTRLGCQESREVRLFL------YW---KRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF 481 (893)
Q Consensus 427 VvLYTksgCP~CkrAK~lL------~e---~GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFI 481 (893)
+++|+.+||++|++....+ .+ .++.+..+|++.+.....++.+..|..++|++++
T Consensus 15 lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~ 78 (104)
T cd02953 15 FVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFGPPTYLF 78 (104)
T ss_pred EEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEE
Confidence 7789999999999887443 11 1577778888766554567777789999998775
No 112
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=96.90 E-value=0.0036 Score=53.43 Aligned_cols=57 Identities=18% Similarity=0.354 Sum_probs=45.8
Q ss_pred EEEEEcCCChhHHHHHHHHHh-----cCCceEEEEcCCChhHHHHHHHHhCCCCcceEEE--cCeeec
Q 002682 427 VILYTRLGCQESREVRLFLYW-----KRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF--NEILMG 487 (893)
Q Consensus 427 VvLYTksgCP~CkrAK~lL~e-----~GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFI--nGk~IG 487 (893)
+++|+.+||++|..+...|.+ .++.|..+|++..+.. .+..|...+|++++ +|+.++
T Consensus 14 ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~v~~~P~~~~~~~g~~~~ 77 (93)
T cd02947 14 VVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKVDVDENPEL----AEEYGVRSIPTFLFFKNGKEVD 77 (93)
T ss_pred EEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEECCCChhH----HHhcCcccccEEEEEECCEEEE
Confidence 888999999999999999987 7888999998875553 34457788999877 676443
No 113
>KOG3029 consensus Glutathione S-transferase-related protein [General function prediction only]
Probab=96.80 E-value=0.0034 Score=68.40 Aligned_cols=64 Identities=22% Similarity=0.425 Sum_probs=52.7
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCCCCcceEEEcCeeecccHhH
Q 002682 426 RVILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILMGGLSEL 492 (893)
Q Consensus 426 kVvLYTksgCP~CkrAK~lL~e~GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFInGk~IGG~DeL 492 (893)
++++|--.+||||-+++.+|+=+||+|+.+.|+ |-.|++++ .+...-||.+.+.|+-+-...-+
T Consensus 90 ~l~LyQyetCPFCcKVrAFLDyhgisY~VVEVn--pV~r~eIk-~SsykKVPil~~~Geqm~dSsvI 153 (370)
T KOG3029|consen 90 DLVLYQYETCPFCCKVRAFLDYHGISYAVVEVN--PVLRQEIK-WSSYKKVPILLIRGEQMVDSSVI 153 (370)
T ss_pred eEEEEeeccCchHHHHHHHHhhcCCceEEEEec--chhhhhcc-ccccccccEEEeccceechhHHH
Confidence 599999999999999999999999999999984 56666664 56778999999998755444433
No 114
>cd03057 GST_N_Beta GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH.
Probab=96.78 E-value=0.0038 Score=54.10 Aligned_cols=68 Identities=13% Similarity=0.146 Sum_probs=53.3
Q ss_pred EEEEcCCChhHHHHHHHHHhcCCceEEEEcCCCh--hHHHHHHHHhCCCCcceEEEc-CeeecccHhHHHhH
Q 002682 428 ILYTRLGCQESREVRLFLYWKRLRYVEINIDVYP--SRKMELEKFAGSSAVPKVFFN-EILMGGLSELKALD 496 (893)
Q Consensus 428 vLYTksgCP~CkrAK~lL~e~GI~YeeIDId~d~--e~r~EL~k~sG~~TVPqIFIn-Gk~IGG~DeL~el~ 496 (893)
++|+.+.|+ |.+++.+|..+|++|+.+.++... ....++.+.++..+||++..+ |..+.....+.++.
T Consensus 2 ~Ly~~~~~~-~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~np~~~vP~l~~~~g~~l~eS~aI~~yL 72 (77)
T cd03057 2 KLYYSPGAC-SLAPHIALEELGLPFELVRVDLRTKTQKGADYLAINPKGQVPALVLDDGEVLTESAAILQYL 72 (77)
T ss_pred EEEeCCCCc-hHHHHHHHHHcCCCceEEEEecccCccCCHhHHHhCCCCCCCEEEECCCcEEEcHHHHHHHH
Confidence 589988774 889999999999999988876432 234678888999999999987 77776666665554
No 115
>cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.
Probab=96.76 E-value=0.0048 Score=53.12 Aligned_cols=68 Identities=13% Similarity=0.086 Sum_probs=54.7
Q ss_pred EEEEcCCChhHHHHHHHHHhcCCceEEEEcCCC--hhHHHHHHHHhCCCCcceEEEcCeeecccHhHHHh
Q 002682 428 ILYTRLGCQESREVRLFLYWKRLRYVEINIDVY--PSRKMELEKFAGSSAVPKVFFNEILMGGLSELKAL 495 (893)
Q Consensus 428 vLYTksgCP~CkrAK~lL~e~GI~YeeIDId~d--~e~r~EL~k~sG~~TVPqIFInGk~IGG~DeL~el 495 (893)
++|..+++|+|.+++-+|..+|++|+.+.++.. .....++.+.+...+||++..+|..+.....+.++
T Consensus 2 ~l~~~~~s~~~~~v~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~nP~~~vP~L~~~~~~l~eS~aI~~Y 71 (73)
T cd03047 2 TIWGRRSSINVQKVLWLLDELGLPYERIDAGGQFGGLDTPEFLAMNPNGRVPVLEDGDFVLWESNAILRY 71 (73)
T ss_pred EEEecCCCcchHHHHHHHHHcCCCCEEEEeccccccccCHHHHhhCCCCCCCEEEECCEEEECHHHHHHH
Confidence 589999999999999999999999999887632 23346778888899999999988777665554443
No 116
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=96.63 E-value=0.0052 Score=55.74 Aligned_cols=57 Identities=30% Similarity=0.494 Sum_probs=44.7
Q ss_pred EEEEEcCCChhHHHHHHHHHh------cCCceEEEEcCCChhHHHHHHHHhCCCCcceEEE--cCeeec
Q 002682 427 VILYTRLGCQESREVRLFLYW------KRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF--NEILMG 487 (893)
Q Consensus 427 VvLYTksgCP~CkrAK~lL~e------~GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFI--nGk~IG 487 (893)
+++|..+||+.|+.+...|++ .++.|..+|++.+++ +....|..++|.+++ +|+.++
T Consensus 17 lv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~----l~~~~~v~~vPt~~i~~~g~~v~ 81 (97)
T cd02949 17 LVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQE----IAEAAGIMGTPTVQFFKDKELVK 81 (97)
T ss_pred EEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHH----HHHHCCCeeccEEEEEECCeEEE
Confidence 778899999999999988876 357788899887665 445568889998876 676653
No 117
>PHA02278 thioredoxin-like protein
Probab=96.48 E-value=0.0083 Score=56.37 Aligned_cols=60 Identities=12% Similarity=0.194 Sum_probs=44.6
Q ss_pred EEEEEcCCChhHHHHHHHHHhc------CCceEEEEcCCChhHHHHHHHHhCCCCcceEEE--cCeee
Q 002682 427 VILYTRLGCQESREVRLFLYWK------RLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF--NEILM 486 (893)
Q Consensus 427 VvLYTksgCP~CkrAK~lL~e~------GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFI--nGk~I 486 (893)
|+-|..+||+.|+.+...|.+. .+++..+||+.++....++.+..+..++|++++ ||+.+
T Consensus 18 vV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk~G~~v 85 (103)
T PHA02278 18 IVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYKDGQLV 85 (103)
T ss_pred EEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEEEEECCEEE
Confidence 7778899999999988777553 356888899865422344667778889998765 78765
No 118
>cd03046 GST_N_GTT1_like GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pomb
Probab=96.42 E-value=0.0085 Score=51.34 Aligned_cols=69 Identities=14% Similarity=0.046 Sum_probs=55.0
Q ss_pred EEEEcCCChhHHHHHHHHHhcCCceEEEEcCCC--hhHHHHHHHHhCCCCcceEEEcCeeecccHhHHHhHh
Q 002682 428 ILYTRLGCQESREVRLFLYWKRLRYVEINIDVY--PSRKMELEKFAGSSAVPKVFFNEILMGGLSELKALDE 497 (893)
Q Consensus 428 vLYTksgCP~CkrAK~lL~e~GI~YeeIDId~d--~e~r~EL~k~sG~~TVPqIFInGk~IGG~DeL~el~e 497 (893)
++|+.+. +.|.+++-+|...|++|+.+.++.. .....++.+.+...+||++..+|..+.....+.++..
T Consensus 2 ~l~~~~~-~~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~g~~l~es~aI~~yL~ 72 (76)
T cd03046 2 TLYHLPR-SRSFRILWLLEELGLPYELVLYDRGPGEQAPPEYLAINPLGKVPVLVDGDLVLTESAAIILYLA 72 (76)
T ss_pred EEEeCCC-CChHHHHHHHHHcCCCcEEEEeCCCCCccCCHHHHhcCCCCCCCEEEECCEEEEcHHHHHHHHH
Confidence 5788776 6799999999999999999888643 2234667778888999999999988887777766654
No 119
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=96.34 E-value=0.011 Score=58.09 Aligned_cols=86 Identities=15% Similarity=0.145 Sum_probs=56.0
Q ss_pred EEEEEcCCChhHHHHHHHHHhc------CCceEEEEcCCChhHHHHHHHHhCCCCcceEEE---cCeeecccHhHHHhHh
Q 002682 427 VILYTRLGCQESREVRLFLYWK------RLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF---NEILMGGLSELKALDE 497 (893)
Q Consensus 427 VvLYTksgCP~CkrAK~lL~e~------GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFI---nGk~IGG~DeL~el~e 497 (893)
|+.|..+||++|+.....|.+. .+.|..++++... ...+.+..|...+|++++ +|+.++-+.- ...
T Consensus 24 vV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~--~~~~~~~~~V~~iPt~v~~~~~G~~v~~~~G---~~~ 98 (142)
T cd02950 24 LVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPK--WLPEIDRYRVDGIPHFVFLDREGNEEGQSIG---LQP 98 (142)
T ss_pred EEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcc--cHHHHHHcCCCCCCEEEEECCCCCEEEEEeC---CCC
Confidence 7788899999999888777542 3567777776432 123455678899998775 4766542221 111
Q ss_pred cCcchHHHHHHHhcCCCCCC
Q 002682 498 SGKLDEKIEYLITEAPPFEA 517 (893)
Q Consensus 498 sGeL~~lLk~~~~~aps~da 517 (893)
..+|..+|+.+..+.+++.+
T Consensus 99 ~~~l~~~l~~l~~~~~~~~~ 118 (142)
T cd02950 99 KQVLAQNLDALVAGEPLPYA 118 (142)
T ss_pred HHHHHHHHHHHHcCCCCCcc
Confidence 23567778888877766543
No 120
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=96.34 E-value=0.0054 Score=71.88 Aligned_cols=58 Identities=22% Similarity=0.300 Sum_probs=46.1
Q ss_pred cEEEEEcCCChhHHHHHHHHHhc-----CCceEEEEcCCChhHHHHHHHHhCCCCcceEEEcCeeec
Q 002682 426 RVILYTRLGCQESREVRLFLYWK-----RLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILMG 487 (893)
Q Consensus 426 kVvLYTksgCP~CkrAK~lL~e~-----GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFInGk~IG 487 (893)
.|++|.+++||||.+|++.+.+. .|..+.+|....|+ +.+.++..+||++|+||+.+.
T Consensus 119 ~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~~~~~~----~~~~~~v~~VP~~~i~~~~~~ 181 (517)
T PRK15317 119 HFETYVSLSCHNCPDVVQALNLMAVLNPNITHTMIDGALFQD----EVEARNIMAVPTVFLNGEEFG 181 (517)
T ss_pred EEEEEEcCCCCCcHHHHHHHHHHHHhCCCceEEEEEchhCHh----HHHhcCCcccCEEEECCcEEE
Confidence 58899999999999999998764 45566777666655 445678899999999997653
No 121
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=96.30 E-value=0.0058 Score=71.66 Aligned_cols=58 Identities=22% Similarity=0.270 Sum_probs=45.3
Q ss_pred cEEEEEcCCChhHHHHHHHHHhc-----CCceEEEEcCCChhHHHHHHHHhCCCCcceEEEcCeeec
Q 002682 426 RVILYTRLGCQESREVRLFLYWK-----RLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILMG 487 (893)
Q Consensus 426 kVvLYTksgCP~CkrAK~lL~e~-----GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFInGk~IG 487 (893)
.|++|.+++||||..|++.+.+. .|..+.+|....++ +.+.++..+||++||||+.++
T Consensus 120 ~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~i~~~~id~~~~~~----~~~~~~v~~VP~~~i~~~~~~ 182 (515)
T TIGR03140 120 HFETYVSLTCQNCPDVVQALNQMALLNPNISHTMIDGALFQD----EVEALGIQGVPAVFLNGEEFH 182 (515)
T ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEchhCHH----HHHhcCCcccCEEEECCcEEE
Confidence 58999999999999999998775 44455666555554 445678889999999997654
No 122
>PRK15113 glutathione S-transferase; Provisional
Probab=96.29 E-value=0.012 Score=60.85 Aligned_cols=61 Identities=13% Similarity=0.132 Sum_probs=50.4
Q ss_pred cEEEEEcC--CChhHHHHHHHHHhcCCceEEEEcCCC--hhHHHHHHHHhCCCCcceEEEcCeee
Q 002682 426 RVILYTRL--GCQESREVRLFLYWKRLRYVEINIDVY--PSRKMELEKFAGSSAVPKVFFNEILM 486 (893)
Q Consensus 426 kVvLYTks--gCP~CkrAK~lL~e~GI~YeeIDId~d--~e~r~EL~k~sG~~TVPqIFInGk~I 486 (893)
.+++|+.+ .||+|.+++-+|..+||+|+.+.++.. +....++.+++....||++..+|..|
T Consensus 5 ~~~Ly~~~~~~s~~~~rv~~~l~e~gi~~e~~~v~~~~~~~~~~~~~~~nP~g~VP~L~~~~~~l 69 (214)
T PRK15113 5 AITLYSDAHFFSPYVMSAFVALQEKGLPFELKTVDLDAGEHLQPTYQGYSLTRRVPTLQHDDFEL 69 (214)
T ss_pred eEEEEeCCCCCCchHHHHHHHHHHcCCCCeEEEeCCCCccccCHHHHhcCCCCCCCEEEECCEEE
Confidence 37899976 799999999999999999999888642 23346788889999999999887544
No 123
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=96.26 E-value=0.0073 Score=71.58 Aligned_cols=56 Identities=18% Similarity=0.306 Sum_probs=46.5
Q ss_pred cEEEEEcCCChhHHHHHHHHHh----c-CCceEEEEcCCChhHHHHHHHHhCCCCcceEEEcCee
Q 002682 426 RVILYTRLGCQESREVRLFLYW----K-RLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEIL 485 (893)
Q Consensus 426 kVvLYTksgCP~CkrAK~lL~e----~-GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFInGk~ 485 (893)
.|.+|..++||||.++.+.+++ . +|..+.+|+...++ +.+.+|..+||.++|||+.
T Consensus 479 ~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~~~~----~~~~~~v~~vP~~~i~~~~ 539 (555)
T TIGR03143 479 NIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVSHFPD----LKDEYGIMSVPAIVVDDQQ 539 (555)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECcccHH----HHHhCCceecCEEEECCEE
Confidence 5889999999999988876654 4 79999999987765 4456799999999999964
No 124
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=96.24 E-value=0.013 Score=62.79 Aligned_cols=60 Identities=15% Similarity=0.295 Sum_probs=48.4
Q ss_pred CCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCCCCcceEEEcCeeecccHhHH
Q 002682 433 LGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILMGGLSELK 493 (893)
Q Consensus 433 sgCP~CkrAK~lL~e~GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFInGk~IGG~DeL~ 493 (893)
..||+|++++..|..+|++|+.+.|+.... .+++.+++...+||++..+|..|.....+.
T Consensus 17 ~~cp~~~rv~i~L~ekgi~~e~~~vd~~~~-~~~fl~inP~g~vPvL~~~g~~l~ES~aI~ 76 (236)
T TIGR00862 17 GNCPFSQRLFMILWLKGVVFNVTTVDLKRK-PEDLQNLAPGTHPPFLTYNTEVKTDVNKIE 76 (236)
T ss_pred CCCHhHHHHHHHHHHcCCCcEEEEECCCCC-CHHHHHHCcCCCCCEEEECCEEeecHHHHH
Confidence 579999999999999999999988875432 367888898999999998887765544333
No 125
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=96.23 E-value=0.013 Score=56.61 Aligned_cols=57 Identities=21% Similarity=0.153 Sum_probs=44.4
Q ss_pred EEEEEcCCChhHHHHHHHHHhc-----C-CceEEEEcCCChhHHHHHHHHhCCCCcceEEE--cCeeec
Q 002682 427 VILYTRLGCQESREVRLFLYWK-----R-LRYVEINIDVYPSRKMELEKFAGSSAVPKVFF--NEILMG 487 (893)
Q Consensus 427 VvLYTksgCP~CkrAK~lL~e~-----G-I~YeeIDId~d~e~r~EL~k~sG~~TVPqIFI--nGk~IG 487 (893)
|+-|+.+|||.|+...-.|.+. + +.|-.+|++..++ +.+..|..++|++++ +|+.++
T Consensus 18 VV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~----la~~~~V~~iPTf~~fk~G~~v~ 82 (114)
T cd02954 18 VIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPD----FNKMYELYDPPTVMFFFRNKHMK 82 (114)
T ss_pred EEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCHH----HHHHcCCCCCCEEEEEECCEEEE
Confidence 6669999999999998888653 2 4678889988765 456678899998765 787664
No 126
>PLN02473 glutathione S-transferase
Probab=96.17 E-value=0.013 Score=60.09 Aligned_cols=69 Identities=16% Similarity=0.171 Sum_probs=54.3
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCC--hhHHHHHHHHhCCCCcceEEEcCeeecccHhHHHh
Q 002682 427 VILYTRLGCQESREVRLFLYWKRLRYVEINIDVY--PSRKMELEKFAGSSAVPKVFFNEILMGGLSELKAL 495 (893)
Q Consensus 427 VvLYTksgCP~CkrAK~lL~e~GI~YeeIDId~d--~e~r~EL~k~sG~~TVPqIFInGk~IGG~DeL~el 495 (893)
++||+.+.||+|.+++-+|..+|++|+.+.++.. +....++.+++...+||++..+|..|....-+.++
T Consensus 3 ~kLy~~~~s~~~~rv~~~L~e~gi~ye~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~ES~aI~~Y 73 (214)
T PLN02473 3 VKVYGQIKAANPQRVLLCFLEKGIEFEVIHVDLDKLEQKKPEHLLRQPFGQVPAIEDGDLKLFESRAIARY 73 (214)
T ss_pred eEEecCCCCCchHHHHHHHHHcCCCceEEEecCcccccCCHHHHhhCCCCCCCeEEECCEEEEehHHHHHH
Confidence 6799999999999999999999999998877532 23345566778889999999888777665544433
No 127
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.17 E-value=0.012 Score=53.07 Aligned_cols=66 Identities=18% Similarity=0.231 Sum_probs=48.6
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhH-HHHH---------H--HHhCCCCcceEEEc-CeeecccHhHH
Q 002682 427 VILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSR-KMEL---------E--KFAGSSAVPKVFFN-EILMGGLSELK 493 (893)
Q Consensus 427 VvLYTksgCP~CkrAK~lL~e~GI~YeeIDId~d~e~-r~EL---------~--k~sG~~TVPqIFIn-Gk~IGG~DeL~ 493 (893)
-+||....||.|.-++++|++.+|.|+.++|...-.. ++.| . +-.|.-.+|.+.++ |+.|-| ++|.
T Consensus 4 p~lfgsn~Cpdca~a~eyl~rl~v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~~d~~vVl~-~Dl~ 82 (85)
T COG4545 4 PKLFGSNLCPDCAPAVEYLERLNVDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLTDDGKVVLG-DDLS 82 (85)
T ss_pred ceeeccccCcchHHHHHHHHHcCCCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEeCCCcEEEe-chhh
Confidence 3899999999999999999999999999999643222 2111 1 22477889999986 565555 4443
No 128
>KOG0406 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.12 E-value=0.016 Score=62.06 Aligned_cols=66 Identities=20% Similarity=0.074 Sum_probs=53.5
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHh-CCCCcceEEEcCeeecccHh
Q 002682 425 GRVILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFA-GSSAVPKVFFNEILMGGLSE 491 (893)
Q Consensus 425 gkVvLYTksgCP~CkrAK~lL~e~GI~YeeIDId~d~e~r~EL~k~s-G~~TVPqIFInGk~IGG~De 491 (893)
+.|.||+.-.|||.+||+-.|+.+||+|+.++++... --+.|.+.+ -+..||++..||+.|+-.-.
T Consensus 8 ~~vrL~~~w~sPfa~R~~iaL~~KgI~yE~veedl~~-Ks~~ll~~np~hkKVPvL~Hn~k~i~ESli 74 (231)
T KOG0406|consen 8 GTVKLLGMWFSPFAQRVRIALKLKGIPYEYVEEDLTN-KSEWLLEKNPVHKKVPVLEHNGKPICESLI 74 (231)
T ss_pred CeEEEEEeecChHHHHHHHHHHhcCCceEEEecCCCC-CCHHHHHhccccccCCEEEECCceehhhHH
Confidence 5699999999999999999999999999999887542 223455655 56899999999998654433
No 129
>cd03043 GST_N_1 GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=96.06 E-value=0.02 Score=49.76 Aligned_cols=64 Identities=16% Similarity=0.163 Sum_probs=51.7
Q ss_pred cCCChhHHHHHHHHHhcCCceEEEEcCCCh-hHHHHHHHHhCCCCcceEEEcCeeecccHhHHHh
Q 002682 432 RLGCQESREVRLFLYWKRLRYVEINIDVYP-SRKMELEKFAGSSAVPKVFFNEILMGGLSELKAL 495 (893)
Q Consensus 432 ksgCP~CkrAK~lL~e~GI~YeeIDId~d~-e~r~EL~k~sG~~TVPqIFInGk~IGG~DeL~el 495 (893)
...||+|.+++-+|..+|++|+.+.++... ....++.+.+....+|++..+|..+.....+.++
T Consensus 7 ~~~s~~s~~v~~~L~~~gl~~e~~~v~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~eS~aI~~Y 71 (73)
T cd03043 7 KNYSSWSLRPWLLLKAAGIPFEEILVPLYTPDTRARILEFSPTGKVPVLVDGGIVVWDSLAICEY 71 (73)
T ss_pred CCCCHHHHHHHHHHHHcCCCCEEEEeCCCCccccHHHHhhCCCCcCCEEEECCEEEEcHHHHHHH
Confidence 467999999999999999999998886432 2346788888899999999999887776665554
No 130
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=96.05 E-value=0.025 Score=53.00 Aligned_cols=64 Identities=17% Similarity=0.282 Sum_probs=46.8
Q ss_pred EEEEEcCCChhHHHHHHHHHhc-----CCceEEEEcCCChhHHHHHHHHhCCCCcceEEE--cCeeecccHhHHHh
Q 002682 427 VILYTRLGCQESREVRLFLYWK-----RLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF--NEILMGGLSELKAL 495 (893)
Q Consensus 427 VvLYTksgCP~CkrAK~lL~e~-----GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFI--nGk~IGG~DeL~el 495 (893)
|+.|..+||+.|+.....|++. ++.|..+|++.. ++.+..+..++|++++ +|+.++.+..+..+
T Consensus 28 vv~F~a~~c~~C~~l~~~l~~la~~~~~v~f~~vd~~~~-----~l~~~~~i~~~Pt~~~f~~G~~v~~~~G~~~~ 98 (113)
T cd02957 28 VVHFYEPGFPRCKILDSHLEELAAKYPETKFVKINAEKA-----FLVNYLDIKVLPTLLVYKNGELIDNIVGFEEL 98 (113)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEEchhh-----HHHHhcCCCcCCEEEEEECCEEEEEEecHHHh
Confidence 6678899999999998888652 566777777643 5666678899998754 88887655544444
No 131
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=96.03 E-value=0.021 Score=54.03 Aligned_cols=56 Identities=23% Similarity=0.309 Sum_probs=38.2
Q ss_pred cEEEEEcCCChhHHHHHHHHH---------hcCCceEEEEcCCChhH---------HHHHHHHhCCCCcceEEE
Q 002682 426 RVILYTRLGCQESREVRLFLY---------WKRLRYVEINIDVYPSR---------KMELEKFAGSSAVPKVFF 481 (893)
Q Consensus 426 kVvLYTksgCP~CkrAK~lL~---------e~GI~YeeIDId~d~e~---------r~EL~k~sG~~TVPqIFI 481 (893)
-++.|+.+||++|++....+. ..++.+..+|++.+... ..++....+..++|++++
T Consensus 17 vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt~~~ 90 (125)
T cd02951 17 LLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYRVRFTPTVIF 90 (125)
T ss_pred EEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcCCccccEEEE
Confidence 378899999999998875442 12455667777654211 245666778899999654
No 132
>PTZ00051 thioredoxin; Provisional
Probab=95.91 E-value=0.025 Score=50.66 Aligned_cols=58 Identities=10% Similarity=0.273 Sum_probs=43.1
Q ss_pred EEEEEcCCChhHHHHHHHHHh-----cCCceEEEEcCCChhHHHHHHHHhCCCCcceEEE--cCeeecc
Q 002682 427 VILYTRLGCQESREVRLFLYW-----KRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF--NEILMGG 488 (893)
Q Consensus 427 VvLYTksgCP~CkrAK~lL~e-----~GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFI--nGk~IGG 488 (893)
++.|..+||+.|++....|.. .++.|..+|++.... +.+..|...+|++++ +|+.++.
T Consensus 22 li~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~----~~~~~~v~~~Pt~~~~~~g~~~~~ 86 (98)
T PTZ00051 22 IVDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVDELSE----VAEKENITSMPTFKVFKNGSVVDT 86 (98)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHcCCcEEEEEECcchHH----HHHHCCCceeeEEEEEeCCeEEEE
Confidence 778899999999999888876 357788888865443 455568888998765 6765543
No 133
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=95.91 E-value=0.025 Score=51.92 Aligned_cols=66 Identities=20% Similarity=0.278 Sum_probs=39.6
Q ss_pred cEEEEEcCCChhHHHHHHHHHh-------c--CCceEEEEcCCChh----------------HHHHHHHHhCCCCcceEE
Q 002682 426 RVILYTRLGCQESREVRLFLYW-------K--RLRYVEINIDVYPS----------------RKMELEKFAGSSAVPKVF 480 (893)
Q Consensus 426 kVvLYTksgCP~CkrAK~lL~e-------~--GI~YeeIDId~d~e----------------~r~EL~k~sG~~TVPqIF 480 (893)
.|++|+.+|||||+++...+.. . ++.+..++++.... ...++....|...+|+++
T Consensus 8 ~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~gtPt~~ 87 (112)
T PF13098_consen 8 IVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVNGTPTIV 87 (112)
T ss_dssp EEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--SSSEEE
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCCccCEEE
Confidence 5889999999999988776653 1 34455555554321 124567777999999998
Q ss_pred Ec---Ce---eecccHh
Q 002682 481 FN---EI---LMGGLSE 491 (893)
Q Consensus 481 In---Gk---~IGG~De 491 (893)
+- |+ .+.|+-.
T Consensus 88 ~~d~~G~~v~~~~G~~~ 104 (112)
T PF13098_consen 88 FLDKDGKIVYRIPGYLS 104 (112)
T ss_dssp ECTTTSCEEEEEESS--
T ss_pred EEcCCCCEEEEecCCCC
Confidence 73 66 4456543
No 134
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=95.85 E-value=0.025 Score=53.56 Aligned_cols=59 Identities=14% Similarity=0.184 Sum_probs=45.4
Q ss_pred EEEEEcCCChhHHHHHHHHHh-----cCCceEEEEcCCChhHHHHHHHHhCCCCcceEEE--cCeeeccc
Q 002682 427 VILYTRLGCQESREVRLFLYW-----KRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF--NEILMGGL 489 (893)
Q Consensus 427 VvLYTksgCP~CkrAK~lL~e-----~GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFI--nGk~IGG~ 489 (893)
|+.|..+||+.|+.+...|.+ .++.|..+|++..++ +.+..+..++|++.+ +|+.++-.
T Consensus 26 vV~f~a~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~~~~~----l~~~~~v~~vPt~l~fk~G~~v~~~ 91 (113)
T cd02989 26 VCHFYHPEFFRCKIMDKHLEILAKKHLETKFIKVNAEKAPF----LVEKLNIKVLPTVILFKNGKTVDRI 91 (113)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHcCCCEEEEEEcccCHH----HHHHCCCccCCEEEEEECCEEEEEE
Confidence 777888999999999988866 357788888887665 445668888998765 78766543
No 135
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=95.84 E-value=0.038 Score=51.07 Aligned_cols=60 Identities=18% Similarity=0.153 Sum_probs=44.6
Q ss_pred EEEEEcCCChhHHHHHHHHHhc-----CCceEEEEcCCChhHHHHHHHHhCCCCcceEEE--cCeeec
Q 002682 427 VILYTRLGCQESREVRLFLYWK-----RLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF--NEILMG 487 (893)
Q Consensus 427 VvLYTksgCP~CkrAK~lL~e~-----GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFI--nGk~IG 487 (893)
|+.|..+||+.|+.....|.+. ++.|..+|++.++.. .++.+..+...+|++++ +|+.++
T Consensus 19 vv~F~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~~~~-~~l~~~~~V~~~Pt~~~~~~G~~v~ 85 (103)
T cd02985 19 VLEFALKHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDENDST-MELCRREKIIEVPHFLFYKDGEKIH 85 (103)
T ss_pred EEEEECCCCHhHHHHhHHHHHHHHHCCCCEEEEEECCCChHH-HHHHHHcCCCcCCEEEEEeCCeEEE
Confidence 7778899999999888877652 567888888766532 34666678899997765 776553
No 136
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=95.83 E-value=0.015 Score=54.70 Aligned_cols=42 Identities=21% Similarity=0.332 Sum_probs=30.8
Q ss_pred EEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHh
Q 002682 430 YTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFA 471 (893)
Q Consensus 430 YTksgCP~CkrAK~lL~e~GI~YeeIDId~d~e~r~EL~k~s 471 (893)
|+.+.|.-|++|+++|+++|++|+.+|+...|--+++|.++.
T Consensus 1 Y~~~~C~t~rka~~~L~~~gi~~~~~d~~k~p~s~~el~~~l 42 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEENGIEYEFIDYKKEPLSREELRELL 42 (110)
T ss_dssp EE-TT-HHHHHHHHHHHHTT--EEEEETTTS---HHHHHHHH
T ss_pred CcCCCCHHHHHHHHHHHHcCCCeEeehhhhCCCCHHHHHHHH
Confidence 889999999999999999999999999988776666665543
No 137
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=95.76 E-value=0.046 Score=48.35 Aligned_cols=57 Identities=16% Similarity=0.338 Sum_probs=42.5
Q ss_pred EEEEEcCCChhHHHHHHHHHhc------CCceEEEEcCCChhHHHHHHHHhCCCCcceEEE--cCeeec
Q 002682 427 VILYTRLGCQESREVRLFLYWK------RLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF--NEILMG 487 (893)
Q Consensus 427 VvLYTksgCP~CkrAK~lL~e~------GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFI--nGk~IG 487 (893)
++.|..+||++|..+...|.+. .+.|-.+|++.++. +.+..|..++|++++ +|+.+.
T Consensus 18 vi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~----~~~~~~v~~~P~~~~~~~g~~~~ 82 (101)
T TIGR01068 18 LVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPD----IAAKYGIRSIPTLLLFKNGKEVD 82 (101)
T ss_pred EEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHH----HHHHcCCCcCCEEEEEeCCcEee
Confidence 7778889999999988777552 36777888876654 445568899999887 676543
No 138
>PRK09381 trxA thioredoxin; Provisional
Probab=95.62 E-value=0.043 Score=50.45 Aligned_cols=59 Identities=17% Similarity=0.251 Sum_probs=43.7
Q ss_pred EEEEEcCCChhHHHHHHHHHh------cCCceEEEEcCCChhHHHHHHHHhCCCCcceEEE--cCeeeccc
Q 002682 427 VILYTRLGCQESREVRLFLYW------KRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF--NEILMGGL 489 (893)
Q Consensus 427 VvLYTksgCP~CkrAK~lL~e------~GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFI--nGk~IGG~ 489 (893)
|+.|..+|||.|+.....|++ .++.+-.+|++..+.. .+..+..++|++++ +|+.++-+
T Consensus 25 vv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~~----~~~~~v~~~Pt~~~~~~G~~~~~~ 91 (109)
T PRK09381 25 LVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGT----APKYGIRGIPTLLLFKNGEVAATK 91 (109)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChhH----HHhCCCCcCCEEEEEeCCeEEEEe
Confidence 778889999999999877754 2456777888766553 44568899998866 78776533
No 139
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=95.57 E-value=0.062 Score=47.93 Aligned_cols=56 Identities=14% Similarity=0.265 Sum_probs=39.6
Q ss_pred EEEEEcCCChhHHHHHHHHHh------cCCceEEEEcCCChhHHHHHHHHhCCCCcceEEE--cCeee
Q 002682 427 VILYTRLGCQESREVRLFLYW------KRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF--NEILM 486 (893)
Q Consensus 427 VvLYTksgCP~CkrAK~lL~e------~GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFI--nGk~I 486 (893)
++.|..+||+.|+++...|.+ ..+.+-.+|++..++ +.+..|...+|++++ +|+.+
T Consensus 18 ~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~----~~~~~~i~~~Pt~~~~~~g~~~ 81 (97)
T cd02984 18 VLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPE----ISEKFEITAVPTFVFFRNGTIV 81 (97)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHH----HHHhcCCccccEEEEEECCEEE
Confidence 678889999999999888865 245555666654443 555678889997654 66644
No 140
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=95.48 E-value=0.062 Score=47.80 Aligned_cols=58 Identities=19% Similarity=0.314 Sum_probs=43.8
Q ss_pred cEEEEEcCCChhHHHHHHHHHh----c--CCceEEEEcCCChhHHHHHHHHhCCCCcceEEE--cCeeec
Q 002682 426 RVILYTRLGCQESREVRLFLYW----K--RLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF--NEILMG 487 (893)
Q Consensus 426 kVvLYTksgCP~CkrAK~lL~e----~--GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFI--nGk~IG 487 (893)
-|+.|+.+||++|+..+..|.+ . ++.|-.+|++..+. +.+..+...+|++++ +|+.+.
T Consensus 20 vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~----l~~~~~v~~~Pt~~~~~~g~~~~ 85 (103)
T PF00085_consen 20 VVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENKE----LCKKYGVKSVPTIIFFKNGKEVK 85 (103)
T ss_dssp EEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSHH----HHHHTTCSSSSEEEEEETTEEEE
T ss_pred EEEEEeCCCCCccccccceecccccccccccccchhhhhccch----hhhccCCCCCCEEEEEECCcEEE
Confidence 3888899999999999987754 2 57777888876533 556678999999876 665553
No 141
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=95.37 E-value=0.021 Score=54.48 Aligned_cols=58 Identities=14% Similarity=0.220 Sum_probs=39.0
Q ss_pred EEEEEcCCChhHHHHHHHHHh------cCCceEEEEcCCChhHHHHHHHHhCC--CCcceEEE---cCeeec
Q 002682 427 VILYTRLGCQESREVRLFLYW------KRLRYVEINIDVYPSRKMELEKFAGS--SAVPKVFF---NEILMG 487 (893)
Q Consensus 427 VvLYTksgCP~CkrAK~lL~e------~GI~YeeIDId~d~e~r~EL~k~sG~--~TVPqIFI---nGk~IG 487 (893)
++.|+.+||++|+.....+.+ ....|..++++.+++...+ ..+. ..+|++++ +|+.++
T Consensus 23 lV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~---~~~~~g~~vPt~~f~~~~Gk~~~ 91 (117)
T cd02959 23 MLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKDE---EFSPDGGYIPRILFLDPSGDVHP 91 (117)
T ss_pred EEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchhh---hcccCCCccceEEEECCCCCCch
Confidence 667889999999999877766 3456888899866532221 2222 24898775 566554
No 142
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=95.25 E-value=0.041 Score=57.47 Aligned_cols=59 Identities=20% Similarity=0.261 Sum_probs=42.9
Q ss_pred cEEEEEc---CCChhHHHHHHHHHhc-----CCceEEEEcCCChhHHHHHHHHhCCCCcceEEE--cCeee
Q 002682 426 RVILYTR---LGCQESREVRLFLYWK-----RLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF--NEILM 486 (893)
Q Consensus 426 kVvLYTk---sgCP~CkrAK~lL~e~-----GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFI--nGk~I 486 (893)
.|++|+. +|||+|+.+..+|++. ++.+..++++.+.. .++.+.+|..++|++.+ ||+.+
T Consensus 22 ~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~--~~l~~~~~V~~~Pt~~~f~~g~~~ 90 (215)
T TIGR02187 22 EIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPED--KEEAEKYGVERVPTTIILEEGKDG 90 (215)
T ss_pred EEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCccc--HHHHHHcCCCccCEEEEEeCCeee
Confidence 4778888 9999999999988664 34556777764322 34566779999999887 55544
No 143
>TIGR01262 maiA maleylacetoacetate isomerase. Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism.
Probab=95.24 E-value=0.027 Score=57.25 Aligned_cols=63 Identities=19% Similarity=0.220 Sum_probs=50.4
Q ss_pred EEEEcCCChhHHHHHHHHHhcCCceEEEEcCC-C--hhHHHHHHHHhCCCCcceEEEcCeeecccH
Q 002682 428 ILYTRLGCQESREVRLFLYWKRLRYVEINIDV-Y--PSRKMELEKFAGSSAVPKVFFNEILMGGLS 490 (893)
Q Consensus 428 vLYTksgCP~CkrAK~lL~e~GI~YeeIDId~-d--~e~r~EL~k~sG~~TVPqIFInGk~IGG~D 490 (893)
+||+...||+|.+++-+|..+||+|+.+.++. . .....++.+++...+||++..+|..+....
T Consensus 1 ~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~ES~ 66 (210)
T TIGR01262 1 KLYSYWRSSCSYRVRIALALKGIDYEYVPVNLLRDGEQRSPEFLALNPQGLVPTLDIDGEVLTQSL 66 (210)
T ss_pred CcccCCCCCchHHHHHHHHHCCCCceEEecccccccccCChhhhhcCCCCcCCEEEECCEEeecHH
Confidence 37888999999999999999999999988863 1 122356778888999999999887665443
No 144
>PLN02817 glutathione dehydrogenase (ascorbate)
Probab=95.18 E-value=0.035 Score=60.37 Aligned_cols=58 Identities=22% Similarity=0.166 Sum_probs=45.8
Q ss_pred CCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCCCCcceEEEcCeeecccHh
Q 002682 433 LGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILMGGLSE 491 (893)
Q Consensus 433 sgCP~CkrAK~lL~e~GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFInGk~IGG~De 491 (893)
..||+|.+++-+|.++|++|+.+.|+... ...++.+++...+||++..+|..|....-
T Consensus 71 g~cp~s~rV~i~L~ekgi~ye~~~vdl~~-~~~~fl~iNP~GkVPvL~~d~~~L~ES~a 128 (265)
T PLN02817 71 GDCPFCQRVLLTLEEKHLPYDMKLVDLTN-KPEWFLKISPEGKVPVVKLDEKWVADSDV 128 (265)
T ss_pred CCCcHHHHHHHHHHHcCCCCEEEEeCcCc-CCHHHHhhCCCCCCCEEEECCEEEecHHH
Confidence 45999999999999999999988776432 23457788888999999998876644433
No 145
>PLN02378 glutathione S-transferase DHAR1
Probab=95.17 E-value=0.043 Score=56.91 Aligned_cols=56 Identities=18% Similarity=0.111 Sum_probs=44.8
Q ss_pred CCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCCCCcceEEEcCeeeccc
Q 002682 433 LGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILMGGL 489 (893)
Q Consensus 433 sgCP~CkrAK~lL~e~GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFInGk~IGG~ 489 (893)
..||||.++.-+|..+|++|+.+.|+.... ..++.+++...+||++..+|..|.-.
T Consensus 18 ~~~p~~~rv~~~L~e~gl~~e~~~v~~~~~-~~~~l~inP~G~VPvL~~~~~~l~ES 73 (213)
T PLN02378 18 GDCPFSQRALLTLEEKSLTYKIHLINLSDK-PQWFLDISPQGKVPVLKIDDKWVTDS 73 (213)
T ss_pred CCCcchHHHHHHHHHcCCCCeEEEeCcccC-CHHHHHhCCCCCCCEEEECCEEecCH
Confidence 459999999999999999999888764321 34678889999999998888655443
No 146
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.12 E-value=0.026 Score=56.90 Aligned_cols=56 Identities=18% Similarity=0.209 Sum_probs=44.2
Q ss_pred EEEEEcCCChhHHHHHHHHHhc------CCceEEEEcCCChhHHHHHHHHhCCCCcceEEE--cCeee
Q 002682 427 VILYTRLGCQESREVRLFLYWK------RLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF--NEILM 486 (893)
Q Consensus 427 VvLYTksgCP~CkrAK~lL~e~------GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFI--nGk~I 486 (893)
|+.|..+||..|+...-.|.++ .+.+-.+|++.+++. ...++...||+|++ ||+.+
T Consensus 65 lVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~el----a~~Y~I~avPtvlvfknGe~~ 128 (150)
T KOG0910|consen 65 LVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPEL----AEDYEISAVPTVLVFKNGEKV 128 (150)
T ss_pred EEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccccccch----HhhcceeeeeEEEEEECCEEe
Confidence 7889999999999999888764 445677888887774 45678899999865 78654
No 147
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=95.12 E-value=0.067 Score=46.66 Aligned_cols=52 Identities=8% Similarity=0.089 Sum_probs=37.7
Q ss_pred cEEEEEcCCChhHHHHHHHHHh----c----CCceEEEEcCCChhHHHHHHHHhCCCCcceEEE
Q 002682 426 RVILYTRLGCQESREVRLFLYW----K----RLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF 481 (893)
Q Consensus 426 kVvLYTksgCP~CkrAK~lL~e----~----GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFI 481 (893)
-+++|+.+||++|+.+...|.. . ++.+..+|.+.++ .+.+..|.+.+|++++
T Consensus 18 ~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~~~i~~~Pt~~~ 77 (101)
T cd02961 18 VLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANN----DLCSEYGVRGYPTIKL 77 (101)
T ss_pred EEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchH----HHHHhCCCCCCCEEEE
Confidence 4889999999999998887754 2 3445556665433 4556678899998865
No 148
>PLN02395 glutathione S-transferase
Probab=95.11 E-value=0.057 Score=55.23 Aligned_cols=64 Identities=11% Similarity=0.120 Sum_probs=50.1
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCC--hhHHHHHHHHhCCCCcceEEEcCeeecccHh
Q 002682 427 VILYTRLGCQESREVRLFLYWKRLRYVEINIDVY--PSRKMELEKFAGSSAVPKVFFNEILMGGLSE 491 (893)
Q Consensus 427 VvLYTksgCP~CkrAK~lL~e~GI~YeeIDId~d--~e~r~EL~k~sG~~TVPqIFInGk~IGG~De 491 (893)
++||+.++|+ |.+++-+|.++|++|+.+.|+.. .....++.+++...+||++..+|..+....-
T Consensus 3 ~~ly~~~~~~-~~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~~~~l~ES~a 68 (215)
T PLN02395 3 LKVYGPAFAS-PKRALVTLIEKGVEFETVPVDLMKGEHKQPEYLALQPFGVVPVIVDGDYKIFESRA 68 (215)
T ss_pred EEEEcCCcCc-HHHHHHHHHHcCCCceEEEeccccCCcCCHHHHhhCCCCCCCEEEECCEEEEcHHH
Confidence 7899987764 89999999999999999887643 2233578888889999999988765554443
No 149
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=95.03 E-value=0.066 Score=48.46 Aligned_cols=52 Identities=12% Similarity=0.166 Sum_probs=39.7
Q ss_pred cEEEEEcCCChhHHHHHHHHHhc-------CCceEEEEcCCChhHHHHHHHHhCCCCcceEEE
Q 002682 426 RVILYTRLGCQESREVRLFLYWK-------RLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF 481 (893)
Q Consensus 426 kVvLYTksgCP~CkrAK~lL~e~-------GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFI 481 (893)
-++.|..+||++|++....|.+. ++.+-.+|++.++. +.+..+..++|++++
T Consensus 19 ~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~----~~~~~~i~~~Pt~~~ 77 (101)
T cd02994 19 WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPG----LSGRFFVTALPTIYH 77 (101)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHh----HHHHcCCcccCEEEE
Confidence 38889999999999888777542 46677788776654 445568899999987
No 150
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=94.99 E-value=0.068 Score=49.26 Aligned_cols=54 Identities=9% Similarity=0.132 Sum_probs=40.2
Q ss_pred EEEEEcCCChhHHHHHHHHHhc------------CCceEEEEcCCChhHHHHHHHHhCCCCcceEEE--cCe
Q 002682 427 VILYTRLGCQESREVRLFLYWK------------RLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF--NEI 484 (893)
Q Consensus 427 VvLYTksgCP~CkrAK~lL~e~------------GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFI--nGk 484 (893)
++.|..+||++|++....|++. .+.|-.+|.+.++. +.+..|..++|++++ +|+
T Consensus 22 lv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~----l~~~~~v~~~Ptl~~~~~g~ 89 (108)
T cd02996 22 LVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESD----IADRYRINKYPTLKLFRNGM 89 (108)
T ss_pred EEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHH----HHHhCCCCcCCEEEEEeCCc
Confidence 7788899999999998777531 35667777776543 556679999998864 554
No 151
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=94.88 E-value=0.077 Score=48.83 Aligned_cols=55 Identities=18% Similarity=0.172 Sum_probs=38.8
Q ss_pred EEEEEcCCChhHHHHHHHHHh----cC---CceEEEEcCCChhHHHHHHHHhCCCCcceEEE--cCeee
Q 002682 427 VILYTRLGCQESREVRLFLYW----KR---LRYVEINIDVYPSRKMELEKFAGSSAVPKVFF--NEILM 486 (893)
Q Consensus 427 VvLYTksgCP~CkrAK~lL~e----~G---I~YeeIDId~d~e~r~EL~k~sG~~TVPqIFI--nGk~I 486 (893)
|+.|..+||+.|+.....|.. .+ +.|..+|++ .+ ++.+..+...+|++++ +|+.+
T Consensus 21 vv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~----~~~~~~~v~~~Pt~~~~~~g~~~ 84 (102)
T cd02948 21 VVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-TI----DTLKRYRGKCEPTFLFYKNGELV 84 (102)
T ss_pred EEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CH----HHHHHcCCCcCcEEEEEECCEEE
Confidence 778999999999988877754 22 456677776 33 2445678899997655 67643
No 152
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=94.83 E-value=0.076 Score=48.23 Aligned_cols=56 Identities=11% Similarity=0.129 Sum_probs=40.4
Q ss_pred cEEEEEcCCChhHHHHHHHHHhc------CCceEEEEcCCChhHHHHHHHHhCCCCcceEEE--cCee
Q 002682 426 RVILYTRLGCQESREVRLFLYWK------RLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF--NEIL 485 (893)
Q Consensus 426 kVvLYTksgCP~CkrAK~lL~e~------GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFI--nGk~ 485 (893)
-++.|..+||++|++....|.+. .+.+-.+|++.++. +.+..+...+|++++ +|+.
T Consensus 21 ~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~----~~~~~~v~~~Pt~~~~~~g~~ 84 (101)
T cd03003 21 WFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRM----LCRSQGVNSYPSLYVFPSGMN 84 (101)
T ss_pred EEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHH----HHHHcCCCccCEEEEEcCCCC
Confidence 37789999999999988877542 24566788876654 445568889999854 5653
No 153
>COG0625 Gst Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=94.69 E-value=0.06 Score=55.22 Aligned_cols=57 Identities=25% Similarity=0.239 Sum_probs=50.0
Q ss_pred EEEEcCCChhHHHHHHHHHhcCCceEEEEcCCCh-hHHHHHHHHhCCCCcceEEEcCe
Q 002682 428 ILYTRLGCQESREVRLFLYWKRLRYVEINIDVYP-SRKMELEKFAGSSAVPKVFFNEI 484 (893)
Q Consensus 428 vLYTksgCP~CkrAK~lL~e~GI~YeeIDId~d~-e~r~EL~k~sG~~TVPqIFInGk 484 (893)
++|..+.+|+|.++.-+|.++|++|+.+.|+... ....++..++....||++..+|-
T Consensus 2 ~L~~~~~sp~~~kv~l~l~e~g~~ye~~~v~~~~~~~~~~~~~~nP~gkVPvL~~~~~ 59 (211)
T COG0625 2 KLYGSPTSPYSRKVRLALEEKGLPYEIVLVDLDAEQKPPDFLALNPLGKVPALVDDDG 59 (211)
T ss_pred eeecCCCCcchHHHHHHHHHcCCCceEEEeCcccccCCHHHHhcCCCCCCCEEeeCCC
Confidence 5899999999999999999999999999988664 44577888999999999998874
No 154
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=94.64 E-value=0.11 Score=55.35 Aligned_cols=67 Identities=12% Similarity=0.173 Sum_probs=45.0
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhc---CCceEEE--EcC-CChh-H----------------------------------
Q 002682 425 GRVILYTRLGCQESREVRLFLYWK---RLRYVEI--NID-VYPS-R---------------------------------- 463 (893)
Q Consensus 425 gkVvLYTksgCP~CkrAK~lL~e~---GI~YeeI--DId-~d~e-~---------------------------------- 463 (893)
..|++||-+.||||+++...|.++ ||.+..+ .+. .++. .
T Consensus 109 ~~I~vFtDp~CpyCkkl~~~l~~~~~~~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~~~c~~~v 188 (232)
T PRK10877 109 HVITVFTDITCGYCHKLHEQMKDYNALGITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSPASCDVDI 188 (232)
T ss_pred EEEEEEECCCChHHHHHHHHHHHHhcCCeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCcccccchH
Confidence 369999999999999999888774 4655443 221 1110 0
Q ss_pred --HHHHHHHhCCCCcceEEE-cCeeecccHh
Q 002682 464 --KMELEKFAGSSAVPKVFF-NEILMGGLSE 491 (893)
Q Consensus 464 --r~EL~k~sG~~TVPqIFI-nGk~IGG~De 491 (893)
..++.+..|.+.+|.+++ ||+.+.|+-.
T Consensus 189 ~~~~~la~~lgi~gTPtiv~~~G~~~~G~~~ 219 (232)
T PRK10877 189 ADHYALGVQFGVQGTPAIVLSNGTLVPGYQG 219 (232)
T ss_pred HHhHHHHHHcCCccccEEEEcCCeEeeCCCC
Confidence 011223347788999998 9999999744
No 155
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=94.52 E-value=0.1 Score=48.92 Aligned_cols=57 Identities=16% Similarity=0.132 Sum_probs=40.9
Q ss_pred cEEEEEcCCChhHHHHHHHHHh-------cCCceEEEEcCCChhHHHHHHHHhCCCCcceEE--EcCeee
Q 002682 426 RVILYTRLGCQESREVRLFLYW-------KRLRYVEINIDVYPSRKMELEKFAGSSAVPKVF--FNEILM 486 (893)
Q Consensus 426 kVvLYTksgCP~CkrAK~lL~e-------~GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIF--InGk~I 486 (893)
-++.|..+||+.|+.....|.+ .++.+-.+|++..+. +....|..++|+++ .+|+.+
T Consensus 27 vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~----l~~~~~V~~~Pt~~i~~~g~~~ 92 (111)
T cd02963 27 YLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERR----LARKLGAHSVPAIVGIINGQVT 92 (111)
T ss_pred EEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHH----HHHHcCCccCCEEEEEECCEEE
Confidence 3778899999999877755532 357777888876554 44556889999877 467654
No 156
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=94.52 E-value=0.11 Score=46.47 Aligned_cols=56 Identities=20% Similarity=0.290 Sum_probs=40.6
Q ss_pred EEEEEcCCChhHHHHHHHHHhc------CCceEEEEcCCChhHHHHHHHHhCCCCcceEEE--cCeee
Q 002682 427 VILYTRLGCQESREVRLFLYWK------RLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF--NEILM 486 (893)
Q Consensus 427 VvLYTksgCP~CkrAK~lL~e~------GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFI--nGk~I 486 (893)
++.|..+||+.|++....|.+. .+.+-.+|++..+. +.+..|...+|++++ +|+.+
T Consensus 16 lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~----l~~~~~i~~~Pt~~~~~~g~~~ 79 (96)
T cd02956 16 VVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQ----IAQQFGVQALPTVYLFAAGQPV 79 (96)
T ss_pred EEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCHH----HHHHcCCCCCCEEEEEeCCEEe
Confidence 7778899999999998777642 34456777766544 455668899999885 66554
No 157
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=94.49 E-value=0.12 Score=47.02 Aligned_cols=52 Identities=15% Similarity=0.171 Sum_probs=38.4
Q ss_pred cEEEEEcCCChhHHHHHHHHHhc------CCceEEEEcCCChhHHHHHHHHhCCCCcceEEE
Q 002682 426 RVILYTRLGCQESREVRLFLYWK------RLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF 481 (893)
Q Consensus 426 kVvLYTksgCP~CkrAK~lL~e~------GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFI 481 (893)
-++.|..+||+.|++....+.+. ++.+-.+|++..++ +.+..|...+|++++
T Consensus 22 v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~----~~~~~~i~~~Pt~~~ 79 (104)
T cd03004 22 WLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKYES----LCQQANIRAYPTIRL 79 (104)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchHH----HHHHcCCCcccEEEE
Confidence 37789999999999887766542 36677888876554 445568899998765
No 158
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=94.41 E-value=0.097 Score=46.58 Aligned_cols=52 Identities=12% Similarity=0.148 Sum_probs=37.8
Q ss_pred cEEEEEcCCChhHHHHHHHHHhc--------CCceEEEEcCCChhHHHHHHHHhCCCCcceEEE
Q 002682 426 RVILYTRLGCQESREVRLFLYWK--------RLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF 481 (893)
Q Consensus 426 kVvLYTksgCP~CkrAK~lL~e~--------GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFI 481 (893)
-|++|+.+||+.|++....|... ++.+..+|++.++. +.+..|...+|.+++
T Consensus 16 ~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~----~~~~~~i~~~P~~~~ 75 (102)
T TIGR01126 16 VLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKD----LASRFGVSGFPTIKF 75 (102)
T ss_pred EEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHH----HHHhCCCCcCCEEEE
Confidence 38999999999999876666441 25566777765543 455678899998854
No 159
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=94.28 E-value=0.099 Score=50.34 Aligned_cols=60 Identities=20% Similarity=0.151 Sum_probs=45.7
Q ss_pred cEEEEEcCC--ChhHHHHHHHHHhc-----C-CceEEEEcCCChhHHHHHHHHhCCCCcceEEE--cCeeeccc
Q 002682 426 RVILYTRLG--CQESREVRLFLYWK-----R-LRYVEINIDVYPSRKMELEKFAGSSAVPKVFF--NEILMGGL 489 (893)
Q Consensus 426 kVvLYTksg--CP~CkrAK~lL~e~-----G-I~YeeIDId~d~e~r~EL~k~sG~~TVPqIFI--nGk~IGG~ 489 (893)
.|+.|+.+| ||.|..+.-+|.+. + +.|-.+|++.++ ++....|..++|++.+ ||+.++..
T Consensus 30 ~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~----~la~~f~V~sIPTli~fkdGk~v~~~ 99 (111)
T cd02965 30 LVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQ----ALAARFGVLRTPALLFFRDGRYVGVL 99 (111)
T ss_pred EEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCH----HHHHHcCCCcCCEEEEEECCEEEEEE
Confidence 488899996 99999999888653 2 446678887766 4566779999998765 88887654
No 160
>PRK10357 putative glutathione S-transferase; Provisional
Probab=94.25 E-value=0.088 Score=53.46 Aligned_cols=58 Identities=14% Similarity=0.144 Sum_probs=46.0
Q ss_pred EEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCCCCcceEEE-cCeee
Q 002682 428 ILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF-NEILM 486 (893)
Q Consensus 428 vLYTksgCP~CkrAK~lL~e~GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFI-nGk~I 486 (893)
++|+.+.||++.+++-+|..+||+|+.+.++.... ..++.+++...+||++.. +|..+
T Consensus 2 ~Ly~~~~s~~~~~v~~~L~~~gv~ye~~~~~~~~~-~~~~~~~nP~g~vP~L~~~~g~~l 60 (202)
T PRK10357 2 KLIGSYTSPFVRKISILLLEKGITFEFVNELPYNA-DNGVAQYNPLGKVPALVTEEGECW 60 (202)
T ss_pred eeecCCCCchHHHHHHHHHHcCCCCeEEecCCCCC-chhhhhcCCccCCCeEEeCCCCee
Confidence 58999999999999999999999999988864321 234556788899999985 45444
No 161
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=94.21 E-value=0.15 Score=54.43 Aligned_cols=56 Identities=9% Similarity=0.137 Sum_probs=40.4
Q ss_pred EEEEEcCCChhHHHHHHHHHhc------CCceEEEEcCCChhHHHHHHHHhCCCCcceEEE--cCeee
Q 002682 427 VILYTRLGCQESREVRLFLYWK------RLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF--NEILM 486 (893)
Q Consensus 427 VvLYTksgCP~CkrAK~lL~e~------GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFI--nGk~I 486 (893)
++.|..+||++|++....+++. .+.+..+|++.++ ++.+..|...+|++++ +|+.+
T Consensus 56 lV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~----~l~~~~~I~~~PTl~~f~~G~~v 119 (224)
T PTZ00443 56 FVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRAL----NLAKRFAIKGYPTLLLFDKGKMY 119 (224)
T ss_pred EEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcccH----HHHHHcCCCcCCEEEEEECCEEE
Confidence 7788999999999998877553 2445566666554 3556678899998764 67655
No 162
>PRK10996 thioredoxin 2; Provisional
Probab=94.18 E-value=0.17 Score=49.56 Aligned_cols=56 Identities=18% Similarity=0.304 Sum_probs=41.2
Q ss_pred EEEEEcCCChhHHHHHHHHHh----c--CCceEEEEcCCChhHHHHHHHHhCCCCcceEEE--cCeee
Q 002682 427 VILYTRLGCQESREVRLFLYW----K--RLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF--NEILM 486 (893)
Q Consensus 427 VvLYTksgCP~CkrAK~lL~e----~--GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFI--nGk~I 486 (893)
++.|+.+||+.|++....|.. . ++.+-.+|++..+. +.+..|..++|++++ +|+.+
T Consensus 56 vv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~----l~~~~~V~~~Ptlii~~~G~~v 119 (139)
T PRK10996 56 VIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAERE----LSARFRIRSIPTIMIFKNGQVV 119 (139)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCHH----HHHhcCCCccCEEEEEECCEEE
Confidence 788999999999988766654 2 45566777776654 455668889998876 67654
No 163
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=94.17 E-value=0.12 Score=53.01 Aligned_cols=58 Identities=14% Similarity=0.214 Sum_probs=42.6
Q ss_pred EEEEEcCCChhHHHHHHHHHhc-----CCceEEEEcCCChhHHHHHHHHhCCCCcceEEE--cCeeeccc
Q 002682 427 VILYTRLGCQESREVRLFLYWK-----RLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF--NEILMGGL 489 (893)
Q Consensus 427 VvLYTksgCP~CkrAK~lL~e~-----GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFI--nGk~IGG~ 489 (893)
|+-|..+||+.|+.+...|..+ .+.|..||++.. ++....+..++|++++ +|+.++.+
T Consensus 87 VV~Fya~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~~-----~l~~~f~v~~vPTlllyk~G~~v~~~ 151 (175)
T cd02987 87 VVHIYEPGIPGCAALNSSLLCLAAEYPAVKFCKIRASAT-----GASDEFDTDALPALLVYKGGELIGNF 151 (175)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHCCCeEEEEEeccch-----hhHHhCCCCCCCEEEEEECCEEEEEE
Confidence 6668889999999888777553 466777777642 5666778899997664 88877533
No 164
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=94.17 E-value=0.13 Score=47.86 Aligned_cols=54 Identities=9% Similarity=0.071 Sum_probs=37.4
Q ss_pred cEEEEEcCCChhHHHHHHHHHhc-------CCceEEEEcCCChhHHHHHHHHhCCCCcceEEE
Q 002682 426 RVILYTRLGCQESREVRLFLYWK-------RLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF 481 (893)
Q Consensus 426 kVvLYTksgCP~CkrAK~lL~e~-------GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFI 481 (893)
-++.|..+|||+|++....|.+. ++.+-.+|++.+.. ....+..|...+|++++
T Consensus 24 vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~--~~~~~~~~v~~~Pti~~ 84 (109)
T cd02993 24 TLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQR--EFAKEELQLKSFPTILF 84 (109)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccch--hhHHhhcCCCcCCEEEE
Confidence 38889999999999998877552 45666777765211 11233468889998863
No 165
>cd03077 GST_N_Alpha GST_N family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Alpha subfamily is composed of eukaryotic GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GSTA3-3 catalyzes the isomerization of intermediates in steroid hormone biosynthesis. GSTA4-4 preferentially catalyzes the
Probab=94.11 E-value=0.25 Score=43.64 Aligned_cols=69 Identities=16% Similarity=0.075 Sum_probs=49.9
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHH--HhCCCCcceEEEcCeeecccHhHHHhH
Q 002682 427 VILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEK--FAGSSAVPKVFFNEILMGGLSELKALD 496 (893)
Q Consensus 427 VvLYTksgCP~CkrAK~lL~e~GI~YeeIDId~d~e~r~EL~k--~sG~~TVPqIFInGk~IGG~DeL~el~ 496 (893)
+++|..+.++.|.+++-+|...|++|+.+.++..+... ++.. .....+||++.+||..+....-+..+.
T Consensus 2 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~v~~~~~~~-~~~~~~~~~~g~vP~L~~~g~~l~ES~AI~~YL 72 (79)
T cd03077 2 PVLHYFNGRGRMESIRWLLAAAGVEFEEKFIESAEDLE-KLKKDGSLMFQQVPMVEIDGMKLVQTRAILNYI 72 (79)
T ss_pred CEEEEeCCCChHHHHHHHHHHcCCCcEEEEeccHHHHH-hhccccCCCCCCCCEEEECCEEEeeHHHHHHHH
Confidence 57899999999999999999999999998886432211 1111 112569999999998776665555443
No 166
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=94.11 E-value=0.15 Score=47.21 Aligned_cols=51 Identities=20% Similarity=0.303 Sum_probs=37.3
Q ss_pred EEEEEcCCChhHHHHHHHHHhc-----CCceEEEEcC-CChhHHHHHHHHhCCCCcceEEE
Q 002682 427 VILYTRLGCQESREVRLFLYWK-----RLRYVEINID-VYPSRKMELEKFAGSSAVPKVFF 481 (893)
Q Consensus 427 VvLYTksgCP~CkrAK~lL~e~-----GI~YeeIDId-~d~e~r~EL~k~sG~~TVPqIFI 481 (893)
++.|..+||++|++..-.|++. ++.+-.+|.+ ..+ .+.+..|...+|++++
T Consensus 22 lV~F~a~WC~~C~~~~p~l~~la~~~~~~~~~~vd~~~~~~----~l~~~~~V~~~PT~~l 78 (100)
T cd02999 22 AVLFYASWCPFSASFRPHFNALSSMFPQIRHLAIEESSIKP----SLLSRYGVVGFPTILL 78 (100)
T ss_pred EEEEECCCCHHHHhHhHHHHHHHHHhccCceEEEECCCCCH----HHHHhcCCeecCEEEE
Confidence 7789999999999888777553 4556666665 333 4556678899998764
No 167
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=93.93 E-value=0.13 Score=45.98 Aligned_cols=52 Identities=15% Similarity=0.167 Sum_probs=36.7
Q ss_pred cEEEEEcCCChhHHHHHHHHHh----c----CCceEEEEcCC-ChhHHHHHHHHhCCCCcceEEE
Q 002682 426 RVILYTRLGCQESREVRLFLYW----K----RLRYVEINIDV-YPSRKMELEKFAGSSAVPKVFF 481 (893)
Q Consensus 426 kVvLYTksgCP~CkrAK~lL~e----~----GI~YeeIDId~-d~e~r~EL~k~sG~~TVPqIFI 481 (893)
-+++|+.+||++|++....+.. . ++.+-.+|.+. .+. +.+..+..++|.+++
T Consensus 21 ~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~----~~~~~~i~~~P~~~~ 81 (105)
T cd02998 21 VLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKD----LAKKYGVSGFPTLKF 81 (105)
T ss_pred EEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchh----hHHhCCCCCcCEEEE
Confidence 3888999999999988777644 2 24455666655 333 445568889999876
No 168
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=93.91 E-value=0.19 Score=45.13 Aligned_cols=51 Identities=14% Similarity=0.165 Sum_probs=37.2
Q ss_pred EEEEEcCCChhHHHHHHHHHh------cCCceEEEEcCCChhHHHHHHHHhCCCCcceEEE
Q 002682 427 VILYTRLGCQESREVRLFLYW------KRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF 481 (893)
Q Consensus 427 VvLYTksgCP~CkrAK~lL~e------~GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFI 481 (893)
+++|..+||+.|++.+..|.+ ..+.+-.+|++..+. +.+..|...+|++++
T Consensus 22 lv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~----~~~~~~i~~~P~~~~ 78 (103)
T cd03001 22 LVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQS----LAQQYGVRGFPTIKV 78 (103)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchHH----HHHHCCCCccCEEEE
Confidence 778889999999998876654 235567777765544 445568889998754
No 169
>PRK13972 GSH-dependent disulfide bond oxidoreductase; Provisional
Probab=93.89 E-value=0.16 Score=52.26 Aligned_cols=54 Identities=20% Similarity=0.301 Sum_probs=44.9
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCC--hhHHHHHHHHhCCCCcceEEE
Q 002682 427 VILYTRLGCQESREVRLFLYWKRLRYVEINIDVY--PSRKMELEKFAGSSAVPKVFF 481 (893)
Q Consensus 427 VvLYTksgCP~CkrAK~lL~e~GI~YeeIDId~d--~e~r~EL~k~sG~~TVPqIFI 481 (893)
+++|..+ +|+|.+++-+|..+||+|+.++|+.. +....++.+++....||++..
T Consensus 2 ~~Ly~~~-~~~~~~v~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~iNP~gkVP~L~~ 57 (215)
T PRK13972 2 IDLYFAP-TPNGHKITLFLEEAELDYRLIKVDLGKGGQFRPEFLRISPNNKIPAIVD 57 (215)
T ss_pred eEEEECC-CCChHHHHHHHHHcCCCcEEEEecCcccccCCHHHHhhCcCCCCCEEEe
Confidence 5789877 69999999999999999999888643 223457888999999999987
No 170
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=93.80 E-value=0.14 Score=45.84 Aligned_cols=56 Identities=5% Similarity=0.045 Sum_probs=38.3
Q ss_pred cEEEEEcCCChhHHHHHHHHHhc---------CCceEEEEcCCChhHHHHHHHHhCCCCcceEEE--cCee
Q 002682 426 RVILYTRLGCQESREVRLFLYWK---------RLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF--NEIL 485 (893)
Q Consensus 426 kVvLYTksgCP~CkrAK~lL~e~---------GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFI--nGk~ 485 (893)
-++.|..+||+.|+.....|.+. .+.+-.+|.+.++. +.+..+...+|++++ +|+.
T Consensus 19 ~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~----~~~~~~v~~~Pt~~~~~~g~~ 85 (102)
T cd03005 19 HFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRE----LCSEFQVRGYPTLLLFKDGEK 85 (102)
T ss_pred EEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChh----hHhhcCCCcCCEEEEEeCCCe
Confidence 37789999999999876655332 35566777765553 344567889998664 5543
No 171
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=93.69 E-value=0.21 Score=50.31 Aligned_cols=58 Identities=12% Similarity=0.172 Sum_probs=41.6
Q ss_pred EEEEEcCCChhHHHHHHHHHh-------cCCceEEEEcCCChhHHHHHHHHhCCCC------cceEE--EcCeeecc
Q 002682 427 VILYTRLGCQESREVRLFLYW-------KRLRYVEINIDVYPSRKMELEKFAGSSA------VPKVF--FNEILMGG 488 (893)
Q Consensus 427 VvLYTksgCP~CkrAK~lL~e-------~GI~YeeIDId~d~e~r~EL~k~sG~~T------VPqIF--InGk~IGG 488 (893)
|+.|..+|||.|+.....|.+ .++.+-.+|++..++.... .+..+ +|+++ .+|+.++.
T Consensus 51 vV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~----~~V~~~~~v~~~PT~ilf~~Gk~v~r 123 (152)
T cd02962 51 LVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEK----FRVSTSPLSKQLPTIILFQGGKEVAR 123 (152)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHHHHH----cCceecCCcCCCCEEEEEECCEEEEE
Confidence 888999999999998877743 2477888999888765433 34444 88765 47776643
No 172
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=93.63 E-value=0.14 Score=46.57 Aligned_cols=54 Identities=9% Similarity=0.093 Sum_probs=38.0
Q ss_pred cEEEEEcCCChhHHHHHHHHHhc------CCceEEEEcCCChhHHHHHHHHhCCCCcceEEE
Q 002682 426 RVILYTRLGCQESREVRLFLYWK------RLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF 481 (893)
Q Consensus 426 kVvLYTksgCP~CkrAK~lL~e~------GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFI 481 (893)
-++.|..+||++|++....|.+. .+.+..+|++.+. ...+.+..|...+|++++
T Consensus 21 ~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~--~~~~~~~~~i~~~Pt~~~ 80 (109)
T cd03002 21 TLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDK--NKPLCGKYGVQGFPTLKV 80 (109)
T ss_pred EEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccc--cHHHHHHcCCCcCCEEEE
Confidence 37889999999999887766543 3456667776532 223555678899998876
No 173
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=93.63 E-value=0.29 Score=50.96 Aligned_cols=58 Identities=16% Similarity=0.256 Sum_probs=41.5
Q ss_pred EEEEEcCCChhHHHH----HHHHHhcCCceEEEEcCCCh-----h----HHHHHHHHhCC--CCcceEEE---cCe
Q 002682 427 VILYTRLGCQESREV----RLFLYWKRLRYVEINIDVYP-----S----RKMELEKFAGS--SAVPKVFF---NEI 484 (893)
Q Consensus 427 VvLYTksgCP~CkrA----K~lL~e~GI~YeeIDId~d~-----e----~r~EL~k~sG~--~TVPqIFI---nGk 484 (893)
+++|..+|||+|++. +++-+++|+++.-|+++... - ....+.+..|. ..+|+.|+ +|+
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~g~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~ 148 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQYGFSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTL 148 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHcCCEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCc
Confidence 889999999999987 66667789988888877431 1 12334555663 68999886 564
No 174
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=93.62 E-value=0.17 Score=49.13 Aligned_cols=57 Identities=7% Similarity=0.085 Sum_probs=40.8
Q ss_pred EEEEEcCCCh--hHH----------HHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCCCCcceEE--EcCeeec
Q 002682 427 VILYTRLGCQ--ESR----------EVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVF--FNEILMG 487 (893)
Q Consensus 427 VvLYTksgCP--~Ck----------rAK~lL~e~GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIF--InGk~IG 487 (893)
|+-|...||+ +|+ .|.++|+..++.+..+|++.+++ |.+.+|.+++|+++ .||+.+.
T Consensus 31 vv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~----La~~~~I~~iPTl~lfk~G~~v~ 101 (120)
T cd03065 31 LLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAK----VAKKLGLDEEDSIYVFKDDEVIE 101 (120)
T ss_pred EEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHH----HHHHcCCccccEEEEEECCEEEE
Confidence 4445555665 497 34566667789999999998765 45567889999875 5888664
No 175
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=93.41 E-value=0.18 Score=48.30 Aligned_cols=55 Identities=15% Similarity=0.064 Sum_probs=38.9
Q ss_pred EEEEEcCCChhHHHHHHHHHhc------CCceEEEEcCCChhHHHHHHHHhCCCCcceEEE--cCe
Q 002682 427 VILYTRLGCQESREVRLFLYWK------RLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF--NEI 484 (893)
Q Consensus 427 VvLYTksgCP~CkrAK~lL~e~------GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFI--nGk 484 (893)
++.|..+||++|+.++-.|.+. .+.+-.+|++.++.. ..+..+..++|++.+ +|+
T Consensus 33 lV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~l---~~~~~~I~~~PTl~lf~~g~ 95 (113)
T cd03006 33 LVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQGK---CRKQKHFFYFPVIHLYYRSR 95 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChHH---HHHhcCCcccCEEEEEECCc
Confidence 7889999999999998877664 255677888766542 223457778887754 554
No 176
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=93.35 E-value=0.19 Score=45.11 Aligned_cols=58 Identities=7% Similarity=0.116 Sum_probs=38.0
Q ss_pred EEEEEcCCChhHHHHHHHHHh--------cCCceEEEEcCCChhHHHHHHHHhCCCCcceEEE--cCeee
Q 002682 427 VILYTRLGCQESREVRLFLYW--------KRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF--NEILM 486 (893)
Q Consensus 427 VvLYTksgCP~CkrAK~lL~e--------~GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFI--nGk~I 486 (893)
++.|..+||++|++....|.. ..+.+..+|++.+. ...+.+..|...+|++++ +|+.+
T Consensus 21 ~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~--~~~~~~~~~i~~~Pt~~~~~~g~~~ 88 (104)
T cd02997 21 LVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPE--HDALKEEYNVKGFPTFKYFENGKFV 88 (104)
T ss_pred EEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCc--cHHHHHhCCCccccEEEEEeCCCee
Confidence 788999999999988655532 22456667776521 123455568889998754 45533
No 177
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=93.27 E-value=0.2 Score=48.84 Aligned_cols=64 Identities=9% Similarity=0.055 Sum_probs=40.7
Q ss_pred EEEEEcCCChhHHHHHH-HHHh--------cCCceEEEEcCCChhHHHHHH----HHhCCCCcceEEE---cCeeecccH
Q 002682 427 VILYTRLGCQESREVRL-FLYW--------KRLRYVEINIDVYPSRKMELE----KFAGSSAVPKVFF---NEILMGGLS 490 (893)
Q Consensus 427 VvLYTksgCP~CkrAK~-lL~e--------~GI~YeeIDId~d~e~r~EL~----k~sG~~TVPqIFI---nGk~IGG~D 490 (893)
++.|+.+||++|+.... .+.. .++-+..+|++..++....+. ...|...+|++++ +|+.+-++.
T Consensus 19 ll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt~vfl~~~G~~~~~~~ 98 (124)
T cd02955 19 FLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPLNVFLTPDLKPFFGGT 98 (124)
T ss_pred EEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCEEEEECCCCCEEeeee
Confidence 45588899999998854 2322 234455666666666544332 2457888998886 678875443
No 178
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=93.27 E-value=0.04 Score=53.93 Aligned_cols=55 Identities=15% Similarity=0.161 Sum_probs=35.7
Q ss_pred cEEEEEcCCChhHHHHHHHH----Hhc-CCceEEEEcCCChhHHHHHHHHhCCCCcceEEE
Q 002682 426 RVILYTRLGCQESREVRLFL----YWK-RLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF 481 (893)
Q Consensus 426 kVvLYTksgCP~CkrAK~lL----~e~-GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFI 481 (893)
+|.+++-+|||.|.+..=+| +.. ++++..+-.+.+++..+.+.. .|.+.+|++++
T Consensus 44 ~ilvi~e~WCgD~~~~vP~l~kiae~~p~i~~~~i~rd~~~el~~~~lt-~g~~~IP~~I~ 103 (129)
T PF14595_consen 44 NILVITETWCGDCARNVPVLAKIAEANPNIEVRIILRDENKELMDQYLT-NGGRSIPTFIF 103 (129)
T ss_dssp EEEEE--TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HHHHHHHTTTTTT--SS--SSEEEE
T ss_pred EEEEEECCCchhHHHHHHHHHHHHHhCCCCeEEEEEecCChhHHHHHHh-CCCeecCEEEE
Confidence 69999999999998765444 445 788888877777766655554 68899999887
No 179
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=93.02 E-value=0.27 Score=42.54 Aligned_cols=61 Identities=15% Similarity=0.097 Sum_probs=40.4
Q ss_pred EEEEEcCCChhHHHHHHHHHhc------CCceEEEEcCCChh-----------------------HHH-----HHHHHhC
Q 002682 427 VILYTRLGCQESREVRLFLYWK------RLRYVEINIDVYPS-----------------------RKM-----ELEKFAG 472 (893)
Q Consensus 427 VvLYTksgCP~CkrAK~lL~e~------GI~YeeIDId~d~e-----------------------~r~-----EL~k~sG 472 (893)
|++|+.+.||+|..+...|.+. ++.+..+.+..... ... .+....|
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 80 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDGGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALARALG 80 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCCcEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHcC
Confidence 5789999999999998888764 45566665532221 001 1122347
Q ss_pred CCCcceEEEcC-eeec
Q 002682 473 SSAVPKVFFNE-ILMG 487 (893)
Q Consensus 473 ~~TVPqIFInG-k~IG 487 (893)
...+|.++++| .+.|
T Consensus 81 ~~g~Pt~v~~~~~~~~ 96 (98)
T cd02972 81 VTGTPTFVVNGEKYSG 96 (98)
T ss_pred CCCCCEEEECCEEcCC
Confidence 78999999999 4433
No 180
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=92.96 E-value=0.4 Score=50.65 Aligned_cols=77 Identities=21% Similarity=0.254 Sum_probs=41.9
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCc----eEEEEcC-------CCh-------hHHHHHHHHhCC--CCcceEEEcCe-e
Q 002682 427 VILYTRLGCQESREVRLFLYWKRLR----YVEINID-------VYP-------SRKMELEKFAGS--SAVPKVFFNEI-L 485 (893)
Q Consensus 427 VvLYTksgCP~CkrAK~lL~e~GI~----YeeIDId-------~d~-------e~r~EL~k~sG~--~TVPqIFInGk-~ 485 (893)
|.|||..||+.|--|-++|.++.-. --...|+ .|+ .++..+.+..|. ...||++|||+ +
T Consensus 2 VELFTSQGCsSCPpAD~~L~~l~~~~~Vi~LafHVDYWDylGWkD~fa~~~~t~RQr~Y~~~~~~~~vYTPQ~vVnG~~~ 81 (202)
T PF06764_consen 2 VELFTSQGCSSCPPADRLLSELAARPDVIALAFHVDYWDYLGWKDPFASPEFTQRQRAYARRFGLRSVYTPQVVVNGREH 81 (202)
T ss_dssp EEEEE-TT-TT-HHHHHHHHHHHHHTSSEEEEEE-STT-SSSS--TT--HHHHHHHHHHHHHTT-S---SSEEEETTTEE
T ss_pred eeEecCCCCCCCcHHHHHHHHhhcCCCEEEEEecCCcccCCCCCCccCChhHHHHHHHHHHHhCCCCCcCCeEEECCeee
Confidence 7899999999999999999775322 2223333 222 334445555544 45699999994 4
Q ss_pred ecccHhHHHhHhcCcchHHHHHHHh
Q 002682 486 MGGLSELKALDESGKLDEKIEYLIT 510 (893)
Q Consensus 486 IGG~DeL~el~esGeL~~lLk~~~~ 510 (893)
.+|.+. ..+...|.....
T Consensus 82 ~~g~~~-------~~~~~ai~~~~~ 99 (202)
T PF06764_consen 82 RVGSDR-------AAVEAAIQAARA 99 (202)
T ss_dssp EETT-H-------HHHHHHHHHHHH
T ss_pred eeccCH-------HHHHHHHHHhhc
Confidence 566653 244455555443
No 181
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=92.75 E-value=0.27 Score=45.07 Aligned_cols=51 Identities=12% Similarity=0.208 Sum_probs=35.7
Q ss_pred EEEEEcCCChhHHHHHHHHHh----c---C--CceEEEEcCCChhHHHHHHHHhCCCCcceEEE
Q 002682 427 VILYTRLGCQESREVRLFLYW----K---R--LRYVEINIDVYPSRKMELEKFAGSSAVPKVFF 481 (893)
Q Consensus 427 VvLYTksgCP~CkrAK~lL~e----~---G--I~YeeIDId~d~e~r~EL~k~sG~~TVPqIFI 481 (893)
++.|..+|||+|++....|.+ . + +.+..+|++..+. +.+..+..++|++++
T Consensus 19 lv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~----~~~~~~I~~~Pt~~l 78 (104)
T cd03000 19 LVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSS----IASEFGVRGYPTIKL 78 (104)
T ss_pred EEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHh----HHhhcCCccccEEEE
Confidence 778899999999977766643 2 3 4455566655443 445678899999865
No 182
>COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones]
Probab=92.74 E-value=0.13 Score=53.45 Aligned_cols=66 Identities=14% Similarity=0.054 Sum_probs=50.2
Q ss_pred EEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCCCCcceEEE-cCeeecccHhHHHhH
Q 002682 429 LYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF-NEILMGGLSELKALD 496 (893)
Q Consensus 429 LYTksgCP~CkrAK~lL~e~GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFI-nGk~IGG~DeL~el~ 496 (893)
+|...-||||.+|+.++.-++||++.+-+..+.+.-. .+..|+..||.+.- +|+.++-.=|+..+.
T Consensus 3 LYIYdHCPfcvrarmi~Gl~nipve~~vL~nDDe~Tp--~rmiG~KqVPiL~Kedg~~m~ESlDIV~y~ 69 (215)
T COG2999 3 LYIYDHCPFCVRARMIFGLKNIPVELHVLLNDDEETP--IRMIGQKQVPILQKEDGRAMPESLDIVHYV 69 (215)
T ss_pred eeEeccChHHHHHHHHhhccCCChhhheeccCcccCh--hhhhcccccceEEccccccchhhhHHHHHH
Confidence 8999999999999999999999999887765543221 34569999999885 577776655554443
No 183
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=92.71 E-value=0.41 Score=49.16 Aligned_cols=32 Identities=16% Similarity=0.103 Sum_probs=25.2
Q ss_pred CcEEEEEcCCChhHHHHHHHHHh--cCCceEEEE
Q 002682 425 GRVILYTRLGCQESREVRLFLYW--KRLRYVEIN 456 (893)
Q Consensus 425 gkVvLYTksgCP~CkrAK~lL~e--~GI~YeeID 456 (893)
..|++|+-+.||||+++...|.. .++.+..+.
T Consensus 79 ~~i~~f~D~~Cp~C~~~~~~l~~~~~~v~v~~~~ 112 (197)
T cd03020 79 RVVYVFTDPDCPYCRKLEKELKPNADGVTVRIFP 112 (197)
T ss_pred EEEEEEECCCCccHHHHHHHHhhccCceEEEEEE
Confidence 36999999999999999999973 455555443
No 184
>PTZ00057 glutathione s-transferase; Provisional
Probab=92.59 E-value=0.36 Score=49.67 Aligned_cols=73 Identities=14% Similarity=0.189 Sum_probs=52.8
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChh-H--HHHHH--HHhCCCCcceEEEcCeeecccHhHHHh
Q 002682 423 MKGRVILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPS-R--KMELE--KFAGSSAVPKVFFNEILMGGLSELKAL 495 (893)
Q Consensus 423 MkgkVvLYTksgCP~CkrAK~lL~e~GI~YeeIDId~d~e-~--r~EL~--k~sG~~TVPqIFInGk~IGG~DeL~el 495 (893)
|.+.++||..+..+.|.+++-+|...|++|+.+.+....+ . .+++. ..+....||++.+||..+....-+..+
T Consensus 1 m~~~~~L~y~~~~~~~~~vrl~L~~~gi~ye~~~~~~~~~~~~~~~~~~~~~~nP~g~vP~L~~~~~~l~eS~AI~~Y 78 (205)
T PTZ00057 1 MAEEIVLYYFDARGKAELIRLIFAYLGIEYTDKRFGENGDAFIEFKNFKKEKDTPFEQVPILEMDNIIFAQSQAIVRY 78 (205)
T ss_pred CCCceEEEecCCCcchHHHHHHHHHcCCCeEEEeccccchHHHHHHhccccCCCCCCCCCEEEECCEEEecHHHHHHH
Confidence 4456889999999999999999999999999998753221 1 11112 356788999999998766555444333
No 185
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=92.30 E-value=0.25 Score=48.01 Aligned_cols=55 Identities=11% Similarity=0.144 Sum_probs=38.0
Q ss_pred EEEEEc-------CCChhHHHHHHHHHh----c--CCceEEEEcCCChhH---HHHHHHHhCCC-CcceEEE
Q 002682 427 VILYTR-------LGCQESREVRLFLYW----K--RLRYVEINIDVYPSR---KMELEKFAGSS-AVPKVFF 481 (893)
Q Consensus 427 VvLYTk-------sgCP~CkrAK~lL~e----~--GI~YeeIDId~d~e~---r~EL~k~sG~~-TVPqIFI 481 (893)
|+.|.. +|||.|+.+.-.|++ . ++.|..+|++..+.. ..++....+.. .+|++++
T Consensus 25 vV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I~~~iPT~~~ 96 (119)
T cd02952 25 FILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKLTTGVPTLLR 96 (119)
T ss_pred EEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCcccCCCEEEE
Confidence 666888 899999988766543 3 477888888764411 13454555666 8999886
No 186
>PF02798 GST_N: Glutathione S-transferase, N-terminal domain; InterPro: IPR004045 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of Cephalopoda is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Soluble GSTs activate glutathione (GSH) to GS-. In many GSTs, this is accomplished by a Tyr at H-bonding distance from the sulphur of GSH. These enzymes catalyse nucleophilic attack by reduced glutathione (GSH) on nonpolar compounds that contain an electrophillic carbon, nitrogen, or sulphur atom []. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold, with each monomer composed of two distinct domains []. The N-terminal domain forms a thioredoxin-like fold that binds the glutathione moiety, while the C-terminal domain contains several hydrophobic alpha-helices that specifically bind hydrophobic substrates. This entry represents the N-terminal domain of GST.; GO: 0005515 protein binding; PDB: 2VCT_H 2WJU_B 4ACS_A 1BYE_D 1AXD_B 2VCV_P 1TDI_A 1JLV_D 1Y6E_A 1U88_B ....
Probab=92.23 E-value=0.49 Score=41.56 Aligned_cols=67 Identities=19% Similarity=0.290 Sum_probs=51.1
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCceEEEEcCC--ChhHHHHHHHHhCC-CCcceEEEc-CeeecccHhHHHh
Q 002682 427 VILYTRLGCQESREVRLFLYWKRLRYVEINIDV--YPSRKMELEKFAGS-SAVPKVFFN-EILMGGLSELKAL 495 (893)
Q Consensus 427 VvLYTksgCP~CkrAK~lL~e~GI~YeeIDId~--d~e~r~EL~k~sG~-~TVPqIFIn-Gk~IGG~DeL~el 495 (893)
+++|..++ .|..++-+|...|++|+.+.++. .....+++.+.... ..||.+..+ |..+.....+..+
T Consensus 3 l~l~~~~~--~~~~~r~~l~~~gv~~e~~~v~~~~~~~~~~e~~~~~p~~g~vP~l~~~~~~~l~es~AI~~Y 73 (76)
T PF02798_consen 3 LTLYNGRG--RSERIRLLLAEKGVEYEDVRVDFEKGEHKSPEFLAINPMFGKVPALEDGDGFVLTESNAILRY 73 (76)
T ss_dssp EEEESSST--TTHHHHHHHHHTT--EEEEEEETTTTGGGSHHHHHHTTTSSSSSEEEETTTEEEESHHHHHHH
T ss_pred EEEECCCC--chHHHHHHHHHhcccCceEEEecccccccchhhhhcccccceeeEEEECCCCEEEcHHHHHHH
Confidence 67787777 88999999999999999887763 33334778888888 999999999 8888766555544
No 187
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=91.94 E-value=0.32 Score=48.73 Aligned_cols=54 Identities=15% Similarity=0.076 Sum_probs=38.3
Q ss_pred EEEEEcCCChhHHHHHHHHHhc-----C-CceEEEEcCCChhHHHHHHHHhCCC-CcceE-EE-cCe
Q 002682 427 VILYTRLGCQESREVRLFLYWK-----R-LRYVEINIDVYPSRKMELEKFAGSS-AVPKV-FF-NEI 484 (893)
Q Consensus 427 VvLYTksgCP~CkrAK~lL~e~-----G-I~YeeIDId~d~e~r~EL~k~sG~~-TVPqI-FI-nGk 484 (893)
|+-|+.+||+.|+..-.+|.+. + +.+-.+||+..++.. ..++.+ .+|.+ |+ +|+
T Consensus 27 VvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~dla----~~y~I~~~~t~~~ffk~g~ 89 (142)
T PLN00410 27 VIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFN----TMYELYDPCTVMFFFRNKH 89 (142)
T ss_pred EEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHHHH----HHcCccCCCcEEEEEECCe
Confidence 6779999999999998888764 2 445788998877644 444555 44666 44 454
No 188
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=91.89 E-value=0.29 Score=54.43 Aligned_cols=61 Identities=15% Similarity=0.263 Sum_probs=47.9
Q ss_pred EEEEEcCCChhHHHHHHHHHhc------CCceEEEEcCCChhHHHHHHHHhCCCCcceEE--EcCeeecccHh
Q 002682 427 VILYTRLGCQESREVRLFLYWK------RLRYVEINIDVYPSRKMELEKFAGSSAVPKVF--FNEILMGGLSE 491 (893)
Q Consensus 427 VvLYTksgCP~CkrAK~lL~e~------GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIF--InGk~IGG~De 491 (893)
++.|..|||+.|+...-.|.+. ++....+|++.++.+. ...|..++|+|+ ++|+.|-||--
T Consensus 47 lV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~vA----aqfgiqsIPtV~af~dGqpVdgF~G 115 (304)
T COG3118 47 LVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPMVA----AQFGVQSIPTVYAFKDGQPVDGFQG 115 (304)
T ss_pred EEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcchhHH----HHhCcCcCCeEEEeeCCcCccccCC
Confidence 6677889999999999998764 3345577888777643 456899999985 69999988864
No 189
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=91.29 E-value=0.51 Score=45.86 Aligned_cols=56 Identities=20% Similarity=0.253 Sum_probs=41.2
Q ss_pred EEEEEcCCChhHHHHHHHHHhc-----C-CceEEEEcCCChhHHHHHHHHhCCCCcce--EEEcCeee
Q 002682 427 VILYTRLGCQESREVRLFLYWK-----R-LRYVEINIDVYPSRKMELEKFAGSSAVPK--VFFNEILM 486 (893)
Q Consensus 427 VvLYTksgCP~CkrAK~lL~e~-----G-I~YeeIDId~d~e~r~EL~k~sG~~TVPq--IFInGk~I 486 (893)
|+=|+.+|||.|+..-.+|.+. + +.|-.+|++..++.. +.++....|+ +|.||+|+
T Consensus 18 VVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~dva----~~y~I~amPtfvffkngkh~ 81 (114)
T cd02986 18 VLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPVYT----QYFDISYIPSTIFFFNGQHM 81 (114)
T ss_pred EEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccccHHHH----HhcCceeCcEEEEEECCcEE
Confidence 6679999999999998888774 3 557778888776643 4445555665 45688887
No 190
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=91.27 E-value=0.43 Score=42.67 Aligned_cols=50 Identities=6% Similarity=0.140 Sum_probs=34.3
Q ss_pred EEEEEcCCChhHHHHHHHHHhc--------CCceEEEEcCCChhHHHHHHHHhCCCCcceEEE
Q 002682 427 VILYTRLGCQESREVRLFLYWK--------RLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF 481 (893)
Q Consensus 427 VvLYTksgCP~CkrAK~lL~e~--------GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFI 481 (893)
++.|..+||++|++....|.+. .+.+..+|.+.+ ++....+..++|++++
T Consensus 22 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-----~~~~~~~~~~~Pt~~~ 79 (104)
T cd02995 22 LVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN-----DVPSEFVVDGFPTILF 79 (104)
T ss_pred EEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch-----hhhhhccCCCCCEEEE
Confidence 7789999999999887777542 245566676543 2233345688998875
No 191
>cd03078 GST_N_Metaxin1_like GST_N family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins including Tom37 from fungi. Mammalian metaxin (or metaxin 1) and the fungal protein Tom37 are components of preprotein import complexes of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals.
Probab=91.20 E-value=0.67 Score=40.94 Aligned_cols=58 Identities=10% Similarity=0.079 Sum_probs=45.6
Q ss_pred CCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCCCCcceEEEcCeeecccHhHHHhHhc
Q 002682 433 LGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILMGGLSELKALDES 498 (893)
Q Consensus 433 sgCP~CkrAK~lL~e~GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFInGk~IGG~DeL~el~es 498 (893)
+.+|+|-++..+|+-.|++|+.+... ++. .+....+|.|..+|+.|+|++.+.+..++
T Consensus 14 s~sp~clk~~~~Lr~~~~~~~v~~~~-n~~-------~sp~gkLP~l~~~~~~i~d~~~Ii~~L~~ 71 (73)
T cd03078 14 SVDPECLAVLAYLKFAGAPLKVVPSN-NPW-------RSPTGKLPALLTSGTKISGPEKIIEYLRK 71 (73)
T ss_pred cCCHHHHHHHHHHHcCCCCEEEEecC-CCC-------CCCCCccCEEEECCEEecChHHHHHHHHH
Confidence 45799999999999999999776432 222 23456799999999999999988887653
No 192
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=91.08 E-value=0.45 Score=45.29 Aligned_cols=55 Identities=15% Similarity=0.199 Sum_probs=40.5
Q ss_pred EEEEEcCCChhHHHHHHHHHhcC-----CceEEEEcCCChhHHHHHHHHhCCCCcceEEE--cCee
Q 002682 427 VILYTRLGCQESREVRLFLYWKR-----LRYVEINIDVYPSRKMELEKFAGSSAVPKVFF--NEIL 485 (893)
Q Consensus 427 VvLYTksgCP~CkrAK~lL~e~G-----I~YeeIDId~d~e~r~EL~k~sG~~TVPqIFI--nGk~ 485 (893)
|+-|+.+||+.|+...=++.++- +.|-.+|++. -.++.+..+...+|++.+ +|+-
T Consensus 25 VvdF~a~wCgPCk~i~P~~~~La~~y~~v~Flkvdvde----~~~~~~~~~V~~~PTf~f~k~g~~ 86 (106)
T KOG0907|consen 25 VVDFYATWCGPCKAIAPKFEKLAEKYPDVVFLKVDVDE----LEEVAKEFNVKAMPTFVFYKGGEE 86 (106)
T ss_pred EEEEECCCCcchhhhhhHHHHHHHHCCCCEEEEEeccc----CHhHHHhcCceEeeEEEEEECCEE
Confidence 55589999999999998888754 4456778876 334555668899998875 5543
No 193
>PRK11752 putative S-transferase; Provisional
Probab=90.79 E-value=0.59 Score=50.53 Aligned_cols=57 Identities=14% Similarity=0.119 Sum_probs=45.2
Q ss_pred cEEEEEcCCChhHHHHHHHHHhc------CCceEEEEcCC--ChhHHHHHHHHhCCCCcceEEEcC
Q 002682 426 RVILYTRLGCQESREVRLFLYWK------RLRYVEINIDV--YPSRKMELEKFAGSSAVPKVFFNE 483 (893)
Q Consensus 426 kVvLYTksgCP~CkrAK~lL~e~------GI~YeeIDId~--d~e~r~EL~k~sG~~TVPqIFInG 483 (893)
.+++|+.+ ||+|.+++-+|.++ |++|+.+.|+. ......++.+++...+||++..++
T Consensus 44 ~~~Ly~~~-s~~~~rV~i~L~e~~~~~~~gl~ye~~~v~~~~~~~~~~e~~~iNP~GkVP~Lv~~d 108 (264)
T PRK11752 44 PLQLYSLG-TPNGQKVTIMLEELLALGVKGAEYDAWLIRIGEGDQFSSGFVEINPNSKIPALLDRS 108 (264)
T ss_pred CeEEecCC-CCchHHHHHHHHHHHhccCCCCceEEEEecCccccccCHHHHhhCCCCCCCEEEeCC
Confidence 47899964 99999999999997 88898877753 222345788888899999998753
No 194
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=90.74 E-value=1 Score=43.17 Aligned_cols=60 Identities=15% Similarity=0.153 Sum_probs=38.0
Q ss_pred EEEEEcCCChhHHHHHHHHHh-------c--CCceEEEEcCCChh---------------------HHHHHHHHhCCCCc
Q 002682 427 VILYTRLGCQESREVRLFLYW-------K--RLRYVEINIDVYPS---------------------RKMELEKFAGSSAV 476 (893)
Q Consensus 427 VvLYTksgCP~CkrAK~lL~e-------~--GI~YeeIDId~d~e---------------------~r~EL~k~sG~~TV 476 (893)
++.|..+||+.|+.....|.+ . ++.+..++++..++ ....+.+..|...+
T Consensus 21 ll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~i 100 (132)
T cd02964 21 GLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQFKVEGI 100 (132)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHHcCCCCC
Confidence 566778999999986655532 2 45566666665431 12345555678889
Q ss_pred ceEE-Ec--Ceee
Q 002682 477 PKVF-FN--EILM 486 (893)
Q Consensus 477 PqIF-In--Gk~I 486 (893)
|+++ |+ |+.+
T Consensus 101 Pt~~lid~~G~iv 113 (132)
T cd02964 101 PTLVVLKPDGDVV 113 (132)
T ss_pred CEEEEECCCCCEE
Confidence 9888 43 5544
No 195
>cd03079 GST_N_Metaxin2 GST_N family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=90.46 E-value=0.46 Score=42.61 Aligned_cols=58 Identities=14% Similarity=0.073 Sum_probs=44.5
Q ss_pred CCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCCCCcceEEEcCeeecccHhHHHhHh
Q 002682 433 LGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILMGGLSELKALDE 497 (893)
Q Consensus 433 sgCP~CkrAK~lL~e~GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFInGk~IGG~DeL~el~e 497 (893)
+..+.|.++.-+|+..|++|+.+++...+. .+....||.+.+||+.|+...-+..+..
T Consensus 15 ~~~~~~~kv~~~L~elglpye~~~~~~~~~-------~~P~GkVP~L~~dg~vI~eS~aIl~yL~ 72 (74)
T cd03079 15 PDNASCLAVQTFLKMCNLPFNVRCRANAEF-------MSPSGKVPFIRVGNQIVSEFGPIVQFVE 72 (74)
T ss_pred CCCCCHHHHHHHHHHcCCCcEEEecCCccc-------cCCCCcccEEEECCEEEeCHHHHHHHHh
Confidence 567789999999999999999886532111 2234689999999999998877766654
No 196
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=90.35 E-value=0.57 Score=44.35 Aligned_cols=54 Identities=11% Similarity=0.112 Sum_probs=36.2
Q ss_pred cEEEEEcCCChhHHHHHHHHHhc---------CCceEEEEcCCChhHHHHHHHHhCCCCcceEEE
Q 002682 426 RVILYTRLGCQESREVRLFLYWK---------RLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF 481 (893)
Q Consensus 426 kVvLYTksgCP~CkrAK~lL~e~---------GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFI 481 (893)
-++.|..+||+.|+.....+.+. .+.+-.+|.+.+. -.++.+..|.+.+|++++
T Consensus 22 vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~--~~~~~~~~~i~~~Pt~~l 84 (114)
T cd02992 22 WLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEE--NVALCRDFGVTGYPTLRY 84 (114)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchh--hHHHHHhCCCCCCCEEEE
Confidence 37788999999999887776542 1444455543322 234556678899998876
No 197
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=90.28 E-value=0.51 Score=49.21 Aligned_cols=54 Identities=15% Similarity=0.110 Sum_probs=40.3
Q ss_pred EEEEEcCCChhHHHHHHHHHhc-----CCceEEEEcCCChhHHHHHHHHhCCCCcceEEE--cCeeec
Q 002682 427 VILYTRLGCQESREVRLFLYWK-----RLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF--NEILMG 487 (893)
Q Consensus 427 VvLYTksgCP~CkrAK~lL~e~-----GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFI--nGk~IG 487 (893)
|+-|+.+||+.|+.+...|.++ .+.|..+|++.. ....+...+|++++ ||+.++
T Consensus 106 VV~Fya~wc~~C~~m~~~l~~LA~k~~~vkFvkI~ad~~-------~~~~~i~~lPTlliyk~G~~v~ 166 (192)
T cd02988 106 VVHLYKDGIPLCRLLNQHLSELARKFPDTKFVKIISTQC-------IPNYPDKNLPTILVYRNGDIVK 166 (192)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHCCCCEEEEEEhHHh-------HhhCCCCCCCEEEEEECCEEEE
Confidence 5668899999999998888664 466777777521 34568899998876 787654
No 198
>PRK10542 glutathionine S-transferase; Provisional
Probab=89.76 E-value=0.67 Score=46.86 Aligned_cols=62 Identities=15% Similarity=0.190 Sum_probs=44.4
Q ss_pred EEEEcCCChhHHHHHHHHHhcCCceEEEEcCCCh---hHHHHHHHHhCCCCcceEEE-cCeeecccH
Q 002682 428 ILYTRLGCQESREVRLFLYWKRLRYVEINIDVYP---SRKMELEKFAGSSAVPKVFF-NEILMGGLS 490 (893)
Q Consensus 428 vLYTksgCP~CkrAK~lL~e~GI~YeeIDId~d~---e~r~EL~k~sG~~TVPqIFI-nGk~IGG~D 490 (893)
++|+.++ +.+.+++-+|..+||+|+.+.|+... ...+++.+++....||++.+ ||..|....
T Consensus 2 ~l~~~~~-s~~~~~~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~nP~g~vPvL~~~~g~~l~eS~ 67 (201)
T PRK10542 2 KLFYKPG-ACSLASHITLRESGLDFTLVSVDLAKKRLENGDDYLAINPKGQVPALLLDDGTLLTEGV 67 (201)
T ss_pred ceeeccc-HHHHHHHHHHHHcCCCceEEEeecccccccCChHHHHhCcCCCCCeEEeCCCcEeecHH
Confidence 4677553 44778888999999999988876432 12356888888999999987 555554433
No 199
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=89.55 E-value=1.2 Score=42.16 Aligned_cols=60 Identities=15% Similarity=0.203 Sum_probs=38.1
Q ss_pred EEEEEcCCChhHHHHHHHHHh-------c--CCceEEEEcCCChh--------------------HHHHHHHHhCCCCcc
Q 002682 427 VILYTRLGCQESREVRLFLYW-------K--RLRYVEINIDVYPS--------------------RKMELEKFAGSSAVP 477 (893)
Q Consensus 427 VvLYTksgCP~CkrAK~lL~e-------~--GI~YeeIDId~d~e--------------------~r~EL~k~sG~~TVP 477 (893)
++.|..+||+.|++....|.+ . ++.+..++++...+ ....+.+..|...+|
T Consensus 22 ll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P 101 (131)
T cd03009 22 GLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFKIEGIP 101 (131)
T ss_pred EEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHcCCCCCC
Confidence 566778999999976665542 2 45566666664432 123455566888899
Q ss_pred eEEE---cCeee
Q 002682 478 KVFF---NEILM 486 (893)
Q Consensus 478 qIFI---nGk~I 486 (893)
.+++ +|+.+
T Consensus 102 ~~~lid~~G~i~ 113 (131)
T cd03009 102 TLIILDADGEVV 113 (131)
T ss_pred EEEEECCCCCEE
Confidence 8875 45543
No 200
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=89.51 E-value=0.71 Score=50.58 Aligned_cols=56 Identities=14% Similarity=0.237 Sum_probs=40.4
Q ss_pred cEEEEEcCCChhHHHHHHHH----HhcCCceEEEEcCCChh-------HHHHHHHHhCCCCcceEEE
Q 002682 426 RVILYTRLGCQESREVRLFL----YWKRLRYVEINIDVYPS-------RKMELEKFAGSSAVPKVFF 481 (893)
Q Consensus 426 kVvLYTksgCP~CkrAK~lL----~e~GI~YeeIDId~d~e-------~r~EL~k~sG~~TVPqIFI 481 (893)
-++.|..+|||+|+...-.| +++|+.+..|+++..+. .-..+.+..|...+|++|+
T Consensus 169 ~Lv~F~AswCp~C~~~~P~L~~la~~yg~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~L 235 (271)
T TIGR02740 169 GLFFFFKSDCPYCHQQAPILQAFEDRYGIEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFL 235 (271)
T ss_pred EEEEEECCCCccHHHHhHHHHHHHHHcCcEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEE
Confidence 37788999999999877666 45688888888875321 0123455678999999986
No 201
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=89.45 E-value=0.62 Score=41.26 Aligned_cols=52 Identities=13% Similarity=0.225 Sum_probs=29.4
Q ss_pred EEEEEcCCChhHHHHHHHHHh-------cCCceEEEEcCCChhHHHHHHHHhCCCCcceEEE
Q 002682 427 VILYTRLGCQESREVRLFLYW-------KRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF 481 (893)
Q Consensus 427 VvLYTksgCP~CkrAK~lL~e-------~GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFI 481 (893)
+++|+.+||++|+..++.+-. ..-.|..+.|+.+.......... ..+|+++|
T Consensus 21 lv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~~~~~---~~~P~~~~ 79 (82)
T PF13899_consen 21 LVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPNAQFDR---QGYPTFFF 79 (82)
T ss_dssp EEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHHHHHH---CSSSEEEE
T ss_pred EEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhHHhCC---ccCCEEEE
Confidence 677899999999988766522 12224444444332222211122 33899886
No 202
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=89.40 E-value=0.77 Score=48.88 Aligned_cols=58 Identities=12% Similarity=0.228 Sum_probs=46.7
Q ss_pred CChhHHHHHHHHHhcCCceEE--EEcCCChhHHHHHHHHhCCCCcceEEEcCeeecccHhHHH
Q 002682 434 GCQESREVRLFLYWKRLRYVE--INIDVYPSRKMELEKFAGSSAVPKVFFNEILMGGLSELKA 494 (893)
Q Consensus 434 gCP~CkrAK~lL~e~GI~Yee--IDId~d~e~r~EL~k~sG~~TVPqIFInGk~IGG~DeL~e 494 (893)
.||+|+++-..|..+|++|.. ||+..-|+ ++..+++...+|.|.+||+.+-..+.+.+
T Consensus 20 dcpf~qr~~m~L~~k~~~f~vttVd~~~kp~---~f~~~sp~~~~P~l~~d~~~~tDs~~Ie~ 79 (221)
T KOG1422|consen 20 DCPFCQRLFMTLELKGVPFKVTTVDLSRKPE---WFLDISPGGKPPVLKFDEKWVTDSDKIEE 79 (221)
T ss_pred CChhHHHHHHHHHHcCCCceEEEeecCCCcH---HHHhhCCCCCCCeEEeCCceeccHHHHHH
Confidence 599999999999999999765 55544444 67889999999999999998877665433
No 203
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=89.23 E-value=1.6 Score=41.59 Aligned_cols=22 Identities=9% Similarity=0.166 Sum_probs=18.5
Q ss_pred cEEEEEcCCChhHHHHHHHHHh
Q 002682 426 RVILYTRLGCQESREVRLFLYW 447 (893)
Q Consensus 426 kVvLYTksgCP~CkrAK~lL~e 447 (893)
.|++|+-++||+|.+....|..
T Consensus 8 ~i~~f~D~~Cp~C~~~~~~l~~ 29 (154)
T cd03023 8 TIVEFFDYNCGYCKKLAPELEK 29 (154)
T ss_pred EEEEEECCCChhHHHhhHHHHH
Confidence 5999999999999888766655
No 204
>cd03075 GST_N_Mu GST_N family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the most abundant GSTs in human liver, skeletal muscle and brain, and are believed to provide protection against diseases inc
Probab=87.31 E-value=2.2 Score=38.06 Aligned_cols=69 Identities=10% Similarity=0.026 Sum_probs=45.5
Q ss_pred EEEEcCCChhHHHHHHHHHhcCCceEEEEcCCCh-hH--HHHHH-HH----hCCCCcceEEEcCeeecccHhHHHhH
Q 002682 428 ILYTRLGCQESREVRLFLYWKRLRYVEINIDVYP-SR--KMELE-KF----AGSSAVPKVFFNEILMGGLSELKALD 496 (893)
Q Consensus 428 vLYTksgCP~CkrAK~lL~e~GI~YeeIDId~d~-e~--r~EL~-k~----sG~~TVPqIFInGk~IGG~DeL~el~ 496 (893)
++|.-..-+.|.+++-+|...|++|+.+.|+... +. ..+.. .. ....+||++..+|..+.-..-+..+.
T Consensus 2 ~l~y~~~~~~~~~~~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~ES~AIl~YL 78 (82)
T cd03075 2 TLGYWDIRGLAQPIRLLLEYTGEKYEEKRYELGDAPDYDRSQWLNEKFKLGLDFPNLPYYIDGDVKLTQSNAILRYI 78 (82)
T ss_pred EEEEeCCccccHHHHHHHHHcCCCcEEEEeccCCccccchHhhhccchhcCCcCCCCCEEEECCEEEeehHHHHHHH
Confidence 3555555578889999999999999988886432 10 11221 11 15679999999887776555444443
No 205
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=87.03 E-value=2.5 Score=41.67 Aligned_cols=71 Identities=15% Similarity=0.224 Sum_probs=44.7
Q ss_pred CCCcEEEEEcCCChh---H-----------HHHHHHHHhcCCceEEEEcCCChhHH------HHHHHHhCCCCcceEEEc
Q 002682 423 MKGRVILYTRLGCQE---S-----------REVRLFLYWKRLRYVEINIDVYPSRK------MELEKFAGSSAVPKVFFN 482 (893)
Q Consensus 423 MkgkVvLYTksgCP~---C-----------krAK~lL~e~GI~YeeIDId~d~e~r------~EL~k~sG~~TVPqIFIn 482 (893)
|+ +|.||--.-|.. | ..+..+|++.|+.+..+|+..+|... .++.+..|...+|.++||
T Consensus 1 M~-~i~ifepamCC~tGvCG~~vd~eL~~~a~~~~~Lk~~gv~v~RyNL~~~P~aF~~n~~V~~~L~~~G~e~LPitlVd 79 (123)
T PF06953_consen 1 MK-KIEIFEPAMCCSTGVCGPSVDPELVRFAADLDWLKEQGVEVERYNLAQNPQAFVENPEVNQLLQTEGAEALPITLVD 79 (123)
T ss_dssp ---EEEEEE-S-SSTTS-SSSS--HHHHHHHHHHHHHHHTT-EEEEEETTT-TTHHHHSHHHHHHHHHH-GGG-SEEEET
T ss_pred CC-ceEEeccccccccCccCCCCCHHHHHHHHHHHHHHhCCceEEEEccccCHHHHHhCHHHHHHHHHcCcccCCEEEEC
Confidence 44 788998776533 3 46678889999999999999877443 234445699999999999
Q ss_pred Ceee--cccHhHHH
Q 002682 483 EILM--GGLSELKA 494 (893)
Q Consensus 483 Gk~I--GG~DeL~e 494 (893)
|+.+ |.|-...+
T Consensus 80 Geiv~~G~YPt~eE 93 (123)
T PF06953_consen 80 GEIVKTGRYPTNEE 93 (123)
T ss_dssp TEEEEESS---HHH
T ss_pred CEEEEecCCCCHHH
Confidence 9886 66655433
No 206
>PF13728 TraF: F plasmid transfer operon protein
Probab=86.88 E-value=1.7 Score=46.25 Aligned_cols=56 Identities=16% Similarity=0.290 Sum_probs=41.6
Q ss_pred cEEEEEcCCChhHHHHHHHH----HhcCCceEEEEcCCC-----hhH--HHHHHHHhCCCCcceEEE
Q 002682 426 RVILYTRLGCQESREVRLFL----YWKRLRYVEINIDVY-----PSR--KMELEKFAGSSAVPKVFF 481 (893)
Q Consensus 426 kVvLYTksgCP~CkrAK~lL----~e~GI~YeeIDId~d-----~e~--r~EL~k~sG~~TVPqIFI 481 (893)
.+++|.+++||+|+...-+| +++|+.+..|++|.. +.. -..+.+..|..++|.+|+
T Consensus 123 gL~~F~~~~C~~C~~~~pil~~~~~~yg~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~L 189 (215)
T PF13728_consen 123 GLFFFYRSDCPYCQQQAPILQQFADKYGFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFL 189 (215)
T ss_pred EEEEEEcCCCchhHHHHHHHHHHHHHhCCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEE
Confidence 48889999999998776666 568999999999732 111 133455668899999997
No 207
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=86.76 E-value=1.9 Score=44.32 Aligned_cols=32 Identities=13% Similarity=0.201 Sum_probs=22.2
Q ss_pred EEEEEcCCChhHHHHHHHH----HhcCCceEEEEcC
Q 002682 427 VILYTRLGCQESREVRLFL----YWKRLRYVEINID 458 (893)
Q Consensus 427 VvLYTksgCP~CkrAK~lL----~e~GI~YeeIDId 458 (893)
|+.|..+|||.|++....+ ++.++.+.-+..+
T Consensus 78 vl~F~atwCp~C~~~lp~l~~~~~~~~~~vv~Is~~ 113 (189)
T TIGR02661 78 LLMFTAPSCPVCDKLFPIIKSIARAEETDVVMISDG 113 (189)
T ss_pred EEEEECCCChhHHHHHHHHHHHHHhcCCcEEEEeCC
Confidence 6678899999998654333 4557776666543
No 208
>COG5494 Predicted thioredoxin/glutaredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=86.43 E-value=0.99 Score=48.13 Aligned_cols=62 Identities=27% Similarity=0.345 Sum_probs=47.0
Q ss_pred CCCCCcEEEEEcCCChhHHHHHHHHHhcCCc--eEEEEcCCChhHHHHHHHHhCCCCcceEEEcCeeecc
Q 002682 421 LVMKGRVILYTRLGCQESREVRLFLYWKRLR--YVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILMGG 488 (893)
Q Consensus 421 ~~MkgkVvLYTksgCP~CkrAK~lL~e~GI~--YeeIDId~d~e~r~EL~k~sG~~TVPqIFInGk~IGG 488 (893)
+.|. |.||+..+|..|-..-+.|+++|+- ++.++-...+.. .++ .|.-+||-||+||+.+-+
T Consensus 9 ~~~~--VkI~~HktC~ssy~Lf~~L~nkgll~~Vkii~a~~p~f~--~~~--~~V~SvP~Vf~DGel~~~ 72 (265)
T COG5494 9 IEME--VKIFTHKTCVSSYMLFEYLENKGLLGKVKIIDAELPPFL--AFE--KGVISVPSVFIDGELVYA 72 (265)
T ss_pred hheE--EEEEEecchHHHHHHHHHHHhcCCCCCceEEEcCCChHH--Hhh--cceeecceEEEcCeEEEc
Confidence 4565 9999999999999999999999885 555555444332 222 367789999999998744
No 209
>PTZ00062 glutaredoxin; Provisional
Probab=86.36 E-value=1.3 Score=46.94 Aligned_cols=52 Identities=15% Similarity=0.119 Sum_probs=37.0
Q ss_pred EEEEEcCCChhHHHHHHHHHhcC-----CceEEEEcCCChhHHHHHHHHhCCCCcceEEE--cCeeecccH
Q 002682 427 VILYTRLGCQESREVRLFLYWKR-----LRYVEINIDVYPSRKMELEKFAGSSAVPKVFF--NEILMGGLS 490 (893)
Q Consensus 427 VvLYTksgCP~CkrAK~lL~e~G-----I~YeeIDId~d~e~r~EL~k~sG~~TVPqIFI--nGk~IGG~D 490 (893)
|..|+.+|||.|+.+..+|.++- +.|-.||.+ .+...||.+++ ||+.|+-+.
T Consensus 21 vl~f~a~w~~~C~~m~~vl~~l~~~~~~~~F~~V~~d------------~~V~~vPtfv~~~~g~~i~r~~ 79 (204)
T PTZ00062 21 VLYVKSSKEPEYEQLMDVCNALVEDFPSLEFYVVNLA------------DANNEYGVFEFYQNSQLINSLE 79 (204)
T ss_pred EEEEeCCCCcchHHHHHHHHHHHHHCCCcEEEEEccc------------cCcccceEEEEEECCEEEeeee
Confidence 55566999999999999987753 445555443 67788996554 788776544
No 210
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=86.05 E-value=1.7 Score=51.38 Aligned_cols=53 Identities=8% Similarity=0.065 Sum_probs=38.1
Q ss_pred EEEEEcCCChhHHHHHHHHHhc-------CCceEEEEcCCChhHHHHHHHHhCCCCcceEEE
Q 002682 427 VILYTRLGCQESREVRLFLYWK-------RLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF 481 (893)
Q Consensus 427 VvLYTksgCP~CkrAK~lL~e~-------GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFI 481 (893)
|+.|..+||++|+.....|.+. ++.+..+|++.+.. .......+..++|+|++
T Consensus 375 LV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~--~~~~~~~~I~~~PTii~ 434 (463)
T TIGR00424 375 LVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQK--EFAKQELQLGSFPTILF 434 (463)
T ss_pred EEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCcc--HHHHHHcCCCccceEEE
Confidence 7789999999999888777542 46677788876532 12234467888998875
No 211
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=85.76 E-value=1.8 Score=52.10 Aligned_cols=59 Identities=10% Similarity=0.145 Sum_probs=41.7
Q ss_pred EEEEEcCCChhHHHHHHHH-------Hh-cCCceEEEEcCCChhHHHHHHHHhCCCCcceEEE---cCee
Q 002682 427 VILYTRLGCQESREVRLFL-------YW-KRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF---NEIL 485 (893)
Q Consensus 427 VvLYTksgCP~CkrAK~lL-------~e-~GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFI---nGk~ 485 (893)
++.|+.+||+.|+..+... +. .++.+..+|++.+.+...++.+..|...+|++++ +|+.
T Consensus 478 lVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~~~~~v~vDvt~~~~~~~~l~~~~~v~g~Pt~~~~~~~G~~ 547 (571)
T PRK00293 478 MLDLYADWCVACKEFEKYTFSDPQVQQALADTVLLQADVTANNAEDVALLKHYNVLGLPTILFFDAQGQE 547 (571)
T ss_pred EEEEECCcCHhHHHHHHHhcCCHHHHHHhcCCEEEEEECCCCChhhHHHHHHcCCCCCCEEEEECCCCCC
Confidence 5668999999999875532 11 3566777888765544456777789999999876 4554
No 212
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=85.24 E-value=1.9 Score=38.76 Aligned_cols=52 Identities=19% Similarity=0.278 Sum_probs=38.7
Q ss_pred cEEEEEcCCChhHHHHHHHHHhc------CCceEEEEcCCChhHHHHHHHHhCCC--CcceEEE
Q 002682 426 RVILYTRLGCQESREVRLFLYWK------RLRYVEINIDVYPSRKMELEKFAGSS--AVPKVFF 481 (893)
Q Consensus 426 kVvLYTksgCP~CkrAK~lL~e~------GI~YeeIDId~d~e~r~EL~k~sG~~--TVPqIFI 481 (893)
-+++|..+||+.|...+..|.+. .+.|..+|++..+. +.+..|.. .+|++.+
T Consensus 15 ~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~~----~~~~~~i~~~~~P~~~~ 74 (103)
T cd02982 15 LLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADDFGR----HLEYFGLKEEDLPVIAI 74 (103)
T ss_pred EEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhHH----HHHHcCCChhhCCEEEE
Confidence 37778899999999999988762 35677777765443 44455777 8999886
No 213
>KOG0867 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=84.77 E-value=2.2 Score=45.27 Aligned_cols=63 Identities=19% Similarity=0.111 Sum_probs=52.7
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCceEEEEcC--CChhHHHHHHHHhCCCCcceEEEcCeeeccc
Q 002682 427 VILYTRLGCQESREVRLFLYWKRLRYVEINID--VYPSRKMELEKFAGSSAVPKVFFNEILMGGL 489 (893)
Q Consensus 427 VvLYTksgCP~CkrAK~lL~e~GI~YeeIDId--~d~e~r~EL~k~sG~~TVPqIFInGk~IGG~ 489 (893)
+++|+.+.-|.|.++...+..+|++|+.+.|+ .......++.++....+||++.-+|-.+-..
T Consensus 3 ~~ly~~~~s~~~r~vl~~~~~~~l~~e~~~v~~~~ge~~~pefl~~nP~~kVP~l~d~~~~l~eS 67 (226)
T KOG0867|consen 3 LKLYGHLGSPPARAVLIAAKELGLEVELKPVDLVKGEQKSPEFLKLNPLGKVPALEDGGLTLWES 67 (226)
T ss_pred ceEeecCCCcchHHHHHHHHHcCCceeEEEeeccccccCCHHHHhcCcCCCCCeEecCCeEEeeH
Confidence 67999999999999999999999999988654 3444556788888999999999887666554
No 214
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=84.74 E-value=2.9 Score=42.21 Aligned_cols=56 Identities=13% Similarity=0.192 Sum_probs=37.4
Q ss_pred cEEEEEcCCChhHHHHHHHHH----hcCCceEEEEcCCChh---------HHHHHHHHh---CCCCcceEEE
Q 002682 426 RVILYTRLGCQESREVRLFLY----WKRLRYVEINIDVYPS---------RKMELEKFA---GSSAVPKVFF 481 (893)
Q Consensus 426 kVvLYTksgCP~CkrAK~lL~----e~GI~YeeIDId~d~e---------~r~EL~k~s---G~~TVPqIFI 481 (893)
.++.|..+|||+|++..-.|. ++|+.+.-++++.... ....+.... |...+|+.|+
T Consensus 53 ~lvnFWAsWCppCr~e~P~L~~l~~~~~~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~L 124 (153)
T TIGR02738 53 ALVFFYQSTCPYCHQFAPVLKRFSQQFGLPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFL 124 (153)
T ss_pred EEEEEECCCChhHHHHHHHHHHHHHHcCCcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEE
Confidence 488999999999997776664 4677777777764320 011122333 5678898885
No 215
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=84.74 E-value=2.5 Score=42.60 Aligned_cols=60 Identities=13% Similarity=0.218 Sum_probs=49.0
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCC----CCcceEEEcCeeeccc
Q 002682 426 RVILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGS----SAVPKVFFNEILMGGL 489 (893)
Q Consensus 426 kVvLYTksgCP~CkrAK~lL~e~GI~YeeIDId~d~e~r~EL~k~sG~----~TVPqIFInGk~IGG~ 489 (893)
++++|-.|+|.=|+.=-+.|+.+|+++..+..+.-. .+++..|. .+.=+.+|||.+|=|-
T Consensus 27 ~~~vyksPnCGCC~~w~~~mk~~Gf~Vk~~~~~d~~----alK~~~gIp~e~~SCHT~VI~Gy~vEGH 90 (149)
T COG3019 27 EMVVYKSPNCGCCDEWAQHMKANGFEVKVVETDDFL----ALKRRLGIPYEMQSCHTAVINGYYVEGH 90 (149)
T ss_pred eEEEEeCCCCccHHHHHHHHHhCCcEEEEeecCcHH----HHHHhcCCChhhccccEEEEcCEEEecc
Confidence 588999999999999999999999999888876533 35555553 5777999999999774
No 216
>PF07315 DUF1462: Protein of unknown function (DUF1462); InterPro: IPR009190 There are currently no experimental data for members of this group of bacterial proteins or their homologues. A crystal structure of Q7A6J8 from SWISSPROT revealed a thioredoxin-like fold, its core consisting of three layers alpha/beta/alpha.; PDB: 1XG8_A.
Probab=84.72 E-value=5.3 Score=37.59 Aligned_cols=68 Identities=21% Similarity=0.343 Sum_probs=38.2
Q ss_pred EEEEcC-CChhH------HHHHHHHHh--------cCCceEEEEcCCChhH---HHHHHHHh-CCCCcceEEEcCeeec-
Q 002682 428 ILYTRL-GCQES------REVRLFLYW--------KRLRYVEINIDVYPSR---KMELEKFA-GSSAVPKVFFNEILMG- 487 (893)
Q Consensus 428 vLYTks-gCP~C------krAK~lL~e--------~GI~YeeIDId~d~e~---r~EL~k~s-G~~TVPqIFInGk~IG- 487 (893)
+||+.. -|+.| +...+||+. ..+.|+.+||...++. ++...++. --.-.|.|.+||+.||
T Consensus 1 ~VYGAe~~CASCVn~PsSkeTyeWL~aal~RKyp~~~f~~~YiDi~~p~~~~~~~~~a~~I~ede~fYPlV~i~~eiV~E 80 (93)
T PF07315_consen 1 VVYGAEVICASCVNAPSSKETYEWLEAALKRKYPDQPFEFTYIDIENPPENDHDQQFAERILEDELFYPLVVINDEIVAE 80 (93)
T ss_dssp EEEE-SS--GGGSSS--HHHHHHHHHHHHHHH-TTS-EEEEEEETTT----HHHHHHHHHHHTTSS-SSEEEETTEEEEE
T ss_pred CcccccccchhhcCCCCchhHHHHHHHHHhCcCCCCceEEEEEecCCCCccHHHHHHHHHHHhcccccceEEECCEEEec
Confidence 467765 48777 566777764 3456889999765432 23333333 3356799999999998
Q ss_pred ccHhHHHh
Q 002682 488 GLSELKAL 495 (893)
Q Consensus 488 G~DeL~el 495 (893)
|+-.|+..
T Consensus 81 Gnp~LK~I 88 (93)
T PF07315_consen 81 GNPQLKDI 88 (93)
T ss_dssp SS--HHHH
T ss_pred CCccHHHH
Confidence 55555443
No 217
>PTZ00102 disulphide isomerase; Provisional
Probab=84.05 E-value=2.2 Score=49.14 Aligned_cols=51 Identities=12% Similarity=0.151 Sum_probs=35.9
Q ss_pred EEEEEcCCChhHHHHHHHHH-------hc--CCceEEEEcCCChhHHHHHHHHhCCCCcceEEE
Q 002682 427 VILYTRLGCQESREVRLFLY-------WK--RLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF 481 (893)
Q Consensus 427 VvLYTksgCP~CkrAK~lL~-------e~--GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFI 481 (893)
++.|..+||++|++....+. .. .+.+-.+|.+.+.. +.+..|...+|++++
T Consensus 53 lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~----l~~~~~i~~~Pt~~~ 112 (477)
T PTZ00102 53 LVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEME----LAQEFGVRGYPTIKF 112 (477)
T ss_pred EEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHH----HHHhcCCCcccEEEE
Confidence 78899999999997765443 22 35667777765544 455668888998754
No 218
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=83.63 E-value=2.5 Score=47.94 Aligned_cols=55 Identities=13% Similarity=0.140 Sum_probs=39.3
Q ss_pred EEEEEcCCChhHHHHHHHHH-------hcC--CceEEEEcCCChhHHHHHHHHhCCCCcceEEE--cCee
Q 002682 427 VILYTRLGCQESREVRLFLY-------WKR--LRYVEINIDVYPSRKMELEKFAGSSAVPKVFF--NEIL 485 (893)
Q Consensus 427 VvLYTksgCP~CkrAK~lL~-------e~G--I~YeeIDId~d~e~r~EL~k~sG~~TVPqIFI--nGk~ 485 (893)
++.|..+||++|++....+. ..+ +.+..+|.+.++ ++.+..|...+|++++ +|+.
T Consensus 22 ~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~----~l~~~~~i~~~Pt~~~~~~g~~ 87 (462)
T TIGR01130 22 LVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEK----DLAQKYGVSGYPTLKIFRNGED 87 (462)
T ss_pred EEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcH----HHHHhCCCccccEEEEEeCCcc
Confidence 77899999999998765443 344 677777777654 3555678889998854 4554
No 219
>KOG4244 consensus Failed axon connections (fax) protein/glutathione S-transferase-like protein [Signal transduction mechanisms]
Probab=83.60 E-value=1.3 Score=48.82 Aligned_cols=60 Identities=18% Similarity=0.250 Sum_probs=47.5
Q ss_pred cEEEEEcC---CC----hhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCCCCcceEEEcCeeecccHhHH
Q 002682 426 RVILYTRL---GC----QESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILMGGLSELK 493 (893)
Q Consensus 426 kVvLYTks---gC----P~CkrAK~lL~e~GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFInGk~IGG~DeL~ 493 (893)
-|-+|.-+ +| |||-++.-+|+..+|||+.++-. +..++...++|-|-.||++|.+.+-+.
T Consensus 45 ~VYLyQF~R~~~~PnLSPfClKvEt~lR~~~IpYE~~~~~--------~~~rSr~G~lPFIELNGe~iaDS~~I~ 111 (281)
T KOG4244|consen 45 TVYLYQFPRTKTCPNLSPFCLKVETFLRAYDIPYEIVDCS--------LKRRSRNGTLPFIELNGEHIADSDLIE 111 (281)
T ss_pred eEEEEeccccCCCCCCChHHHHHHHHHHHhCCCceecccc--------ceeeccCCCcceEEeCCeeccccHHHH
Confidence 46666643 44 79999999999999999998764 234566789999999999999877543
No 220
>PLN02309 5'-adenylylsulfate reductase
Probab=83.55 E-value=2 Score=50.59 Aligned_cols=53 Identities=6% Similarity=0.027 Sum_probs=37.2
Q ss_pred cEEEEEcCCChhHHHHHHHHHhc-------CCceEEEEcC-CChhHHHHHHHHhCCCCcceEEE
Q 002682 426 RVILYTRLGCQESREVRLFLYWK-------RLRYVEINID-VYPSRKMELEKFAGSSAVPKVFF 481 (893)
Q Consensus 426 kVvLYTksgCP~CkrAK~lL~e~-------GI~YeeIDId-~d~e~r~EL~k~sG~~TVPqIFI 481 (893)
-|+.|..+||++|+.++..|.+. ++.+-.+|++ .+.. ...+..+...+|+|++
T Consensus 368 vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~---la~~~~~I~~~PTil~ 428 (457)
T PLN02309 368 WLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKE---FAKQELQLGSFPTILL 428 (457)
T ss_pred EEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchH---HHHhhCCCceeeEEEE
Confidence 48899999999999888777543 4666677776 3222 1223467889999876
No 221
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=82.44 E-value=4.9 Score=35.39 Aligned_cols=35 Identities=17% Similarity=0.102 Sum_probs=24.8
Q ss_pred cEEEEEcCCChhHHHHHHHHHh-------cCCceEEEEcCCC
Q 002682 426 RVILYTRLGCQESREVRLFLYW-------KRLRYVEINIDVY 460 (893)
Q Consensus 426 kVvLYTksgCP~CkrAK~lL~e-------~GI~YeeIDId~d 460 (893)
-+++|..+||+.|.+....|.+ .++.+..++++..
T Consensus 22 ~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~ 63 (116)
T cd02966 22 VLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDD 63 (116)
T ss_pred EEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCC
Confidence 3778888999999866555533 2566777777764
No 222
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=81.07 E-value=6.8 Score=36.86 Aligned_cols=34 Identities=21% Similarity=0.104 Sum_probs=23.8
Q ss_pred EEEEEcCCChhHHHHHHHHHhc----CCceEEEEcCCC
Q 002682 427 VILYTRLGCQESREVRLFLYWK----RLRYVEINIDVY 460 (893)
Q Consensus 427 VvLYTksgCP~CkrAK~lL~e~----GI~YeeIDId~d 460 (893)
|+.|..+|||.|......|.+. ++.+..++++..
T Consensus 29 vv~F~a~~C~~C~~~~~~l~~l~~~~~~~vv~v~~~~~ 66 (127)
T cd03010 29 LLNVWASWCAPCREEHPVLMALARQGRVPIYGINYKDN 66 (127)
T ss_pred EEEEEcCcCHHHHHHHHHHHHHHHhcCcEEEEEECCCC
Confidence 7778899999999877666543 455556665433
No 223
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=80.90 E-value=4.4 Score=41.82 Aligned_cols=55 Identities=16% Similarity=0.228 Sum_probs=35.8
Q ss_pred EEEEEcCCChhHHHHHHHHHh------c---CCceEEEEcCCCh------------hHHHHHHHHhCCCCcceEEE
Q 002682 427 VILYTRLGCQESREVRLFLYW------K---RLRYVEINIDVYP------------SRKMELEKFAGSSAVPKVFF 481 (893)
Q Consensus 427 VvLYTksgCP~CkrAK~lL~e------~---GI~YeeIDId~d~------------e~r~EL~k~sG~~TVPqIFI 481 (893)
+.||..++|+||.+.|+-+.. . .+.+.++++.... .-..+|.+..+.++.|++++
T Consensus 46 llmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrstPtfvF 121 (182)
T COG2143 46 LLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVRSTPTFVF 121 (182)
T ss_pred EEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhccccCceEEE
Confidence 889999999999877755432 1 1334445543211 11347778888888898776
No 224
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=80.51 E-value=4.9 Score=39.60 Aligned_cols=60 Identities=12% Similarity=0.228 Sum_probs=36.5
Q ss_pred EEEEEcCCChhHHHHHHHHH-------hcCCceEEEEcCCChhH------------------HHHHHHHhCCCCcceEE-
Q 002682 427 VILYTRLGCQESREVRLFLY-------WKRLRYVEINIDVYPSR------------------KMELEKFAGSSAVPKVF- 480 (893)
Q Consensus 427 VvLYTksgCP~CkrAK~lL~-------e~GI~YeeIDId~d~e~------------------r~EL~k~sG~~TVPqIF- 480 (893)
++.|..+|||+|+.....|. ..++.+..++.+..++. ..++.+..|...+|.+|
T Consensus 65 ~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~l 144 (173)
T PRK03147 65 FLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDAYGVGPLPTTFL 144 (173)
T ss_pred EEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHHcCCCCcCeEEE
Confidence 67788999999987544442 23466666666544322 12444556777788655
Q ss_pred Ec--Ceee
Q 002682 481 FN--EILM 486 (893)
Q Consensus 481 In--Gk~I 486 (893)
|+ |+.+
T Consensus 145 id~~g~i~ 152 (173)
T PRK03147 145 IDKDGKVV 152 (173)
T ss_pred ECCCCcEE
Confidence 43 6554
No 225
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=79.66 E-value=1.9 Score=40.15 Aligned_cols=22 Identities=9% Similarity=0.031 Sum_probs=17.3
Q ss_pred cEEEEEcCCChhHHHHHHHHHh
Q 002682 426 RVILYTRLGCQESREVRLFLYW 447 (893)
Q Consensus 426 kVvLYTksgCP~CkrAK~lL~e 447 (893)
-|+.|..+|||.|......|..
T Consensus 23 ~vl~F~~~~C~~C~~~~~~l~~ 44 (123)
T cd03011 23 VLVYFWATWCPVCRFTSPTVNQ 44 (123)
T ss_pred EEEEEECCcChhhhhhChHHHH
Confidence 4778889999999988666654
No 226
>KOG1695 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=79.59 E-value=4.9 Score=42.80 Aligned_cols=69 Identities=10% Similarity=0.005 Sum_probs=55.9
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCCCCcceEEEcCeeecccHhHHHh
Q 002682 426 RVILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILMGGLSELKAL 495 (893)
Q Consensus 426 kVvLYTksgCP~CkrAK~lL~e~GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFInGk~IGG~DeL~el 495 (893)
..+++.-+..+.|.-++.+|.-.|++|+++.+..... ...++..+....+|++-|||..|...-.+..+
T Consensus 3 ~ykL~Yf~~RG~ae~iR~lf~~a~v~fEd~r~~~~~~-w~~~K~~~pfgqlP~l~vDg~~i~QS~AI~Ry 71 (206)
T KOG1695|consen 3 PYKLTYFNIRGLAEPIRLLFAYAGVSFEDKRITMEDA-WEELKDKMPFGQLPVLEVDGKKLVQSRAILRY 71 (206)
T ss_pred ceEEEecCcchhHHHHHHHHHhcCCCcceeeeccccc-hhhhcccCCCCCCCEEeECCEeeccHHHHHHH
Confidence 4678888999999999999999999999999986654 44566667889999999999887665444443
No 227
>KOG0868 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=78.73 E-value=2.8 Score=43.98 Aligned_cols=61 Identities=21% Similarity=0.363 Sum_probs=42.2
Q ss_pred cEEEEE--cCCChhHHHHHHHHHhcCCceEEEEcC--CC-hhHHHHHHHHhCCCCcceEEEcCeeecc
Q 002682 426 RVILYT--RLGCQESREVRLFLYWKRLRYVEINID--VY-PSRKMELEKFAGSSAVPKVFFNEILMGG 488 (893)
Q Consensus 426 kVvLYT--ksgCP~CkrAK~lL~e~GI~YeeIDId--~d-~e~r~EL~k~sG~~TVPqIFInGk~IGG 488 (893)
+-++|+ +++|.| ||+-.|.-+||+|+.+.|+ .. ...-.++++++...+||.+.|||..+..
T Consensus 5 KpiLYSYWrSSCsw--RVRiALaLK~iDYey~PvnLlk~~~q~~~ef~~iNPm~kVP~L~i~g~tl~e 70 (217)
T KOG0868|consen 5 KPILYSYWRSSCSW--RVRIALALKGIDYEYKPVNLLKEEDQSDSEFKEINPMEKVPTLVIDGLTLTE 70 (217)
T ss_pred cchhhhhhcccchH--HHHHHHHHcCCCcceeehhhhcchhhhhhHHhhcCchhhCCeEEECCEEeeh
Confidence 456666 567765 5566666667776666554 33 2333488888889999999999987643
No 228
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=77.38 E-value=9.1 Score=38.63 Aligned_cols=34 Identities=15% Similarity=0.107 Sum_probs=24.3
Q ss_pred EEEEEcCCChhHHHHHHHHHh---cCCceEEEEcCCC
Q 002682 427 VILYTRLGCQESREVRLFLYW---KRLRYVEINIDVY 460 (893)
Q Consensus 427 VvLYTksgCP~CkrAK~lL~e---~GI~YeeIDId~d 460 (893)
|+.|..+|||.|++....|.+ .|+.+.-++++..
T Consensus 67 ll~F~a~wC~~C~~~~p~l~~l~~~~~~vi~V~~~~~ 103 (173)
T TIGR00385 67 LLNVWASWCPPCRAEHPYLNELAKDGLPIVGVDYKDQ 103 (173)
T ss_pred EEEEECCcCHHHHHHHHHHHHHHHcCCEEEEEECCCC
Confidence 677889999999987655543 4677777776533
No 229
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=76.55 E-value=9.4 Score=34.96 Aligned_cols=53 Identities=17% Similarity=0.179 Sum_probs=30.9
Q ss_pred EEEEEcCCChhHHHHHHHHHhc------CCceEEEEcCCChhHHHHHHHHhCCCCcceEE
Q 002682 427 VILYTRLGCQESREVRLFLYWK------RLRYVEINIDVYPSRKMELEKFAGSSAVPKVF 480 (893)
Q Consensus 427 VvLYTksgCP~CkrAK~lL~e~------GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIF 480 (893)
|+.|..+|||.|++....|.+. ++.+..+ .+.+.+....+.+..+...+|.++
T Consensus 25 vl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v-~~~~~~~~~~~~~~~~~~~~p~~~ 83 (114)
T cd02967 25 LLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLA-SDGEKAEHQRFLKKHGLEAFPYVL 83 (114)
T ss_pred EEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEE-eCCCHHHHHHHHHHhCCCCCcEEe
Confidence 6778889999999876666542 2333322 233333344444545555678764
No 230
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=76.46 E-value=8.7 Score=39.32 Aligned_cols=36 Identities=17% Similarity=0.164 Sum_probs=25.9
Q ss_pred EEEEEcCCChhHHHHHHHHH---hcCCceEEEEcCCChh
Q 002682 427 VILYTRLGCQESREVRLFLY---WKRLRYVEINIDVYPS 462 (893)
Q Consensus 427 VvLYTksgCP~CkrAK~lL~---e~GI~YeeIDId~d~e 462 (893)
|+.|..+|||.|++..-.|. +.|+.+.-++++.+++
T Consensus 72 vv~FwatwC~~C~~e~p~l~~l~~~~~~vi~v~~~~~~~ 110 (185)
T PRK15412 72 LLNVWATWCPTCRAEHQYLNQLSAQGIRVVGMNYKDDRQ 110 (185)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHcCCEEEEEECCCCHH
Confidence 66788999999987665553 4577777777765543
No 231
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=75.94 E-value=5.6 Score=45.14 Aligned_cols=49 Identities=6% Similarity=0.104 Sum_probs=35.3
Q ss_pred EEEEEcCCChhHHHHHHHHHhc---------CCceEEEEcCCChhHHHHHHHHhCCCCcceEEE
Q 002682 427 VILYTRLGCQESREVRLFLYWK---------RLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF 481 (893)
Q Consensus 427 VvLYTksgCP~CkrAK~lL~e~---------GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFI 481 (893)
++.|..+||+.|+.....+.+. ++.+..+|++.+.- .. .+...+|++++
T Consensus 368 lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~~-----~~-~~i~~~Pt~~~ 425 (462)
T TIGR01130 368 LVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATANDV-----PP-FEVEGFPTIKF 425 (462)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCcc-----CC-CCccccCEEEE
Confidence 7779999999999887666541 46677788765432 22 56678998887
No 232
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=75.65 E-value=4.3 Score=37.99 Aligned_cols=54 Identities=6% Similarity=0.054 Sum_probs=32.8
Q ss_pred EEEEEcCCChhHHHHHH-HHHhcCC------ceEEEEcCCC-hhHHHHHHHHhCCCCcceEEE
Q 002682 427 VILYTRLGCQESREVRL-FLYWKRL------RYVEINIDVY-PSRKMELEKFAGSSAVPKVFF 481 (893)
Q Consensus 427 VvLYTksgCP~CkrAK~-lL~e~GI------~YeeIDId~d-~e~r~EL~k~sG~~TVPqIFI 481 (893)
++.+..+||++|+...+ .|....| .|..+-++.. ++ ...+....+...+|.+++
T Consensus 21 lv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e-~~~~~~~~~~~~~P~~~~ 82 (114)
T cd02958 21 LVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSE-GQRFLQSYKVDKYPHIAI 82 (114)
T ss_pred EEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCcc-HHHHHHHhCccCCCeEEE
Confidence 55566789999987653 3432221 2444444332 33 345677778889998875
No 233
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=75.14 E-value=6 Score=43.47 Aligned_cols=56 Identities=13% Similarity=0.232 Sum_probs=41.1
Q ss_pred cEEEEEcCCChhHHHHHHHH----HhcCCceEEEEcCCC--hh---HH--HHHHHHhCCCCcceEEE
Q 002682 426 RVILYTRLGCQESREVRLFL----YWKRLRYVEINIDVY--PS---RK--MELEKFAGSSAVPKVFF 481 (893)
Q Consensus 426 kVvLYTksgCP~CkrAK~lL----~e~GI~YeeIDId~d--~e---~r--~EL~k~sG~~TVPqIFI 481 (893)
.+++|.++.||+|++.--.| +++|++...|++|.. +. .+ ..+.+..|...+|.+|+
T Consensus 153 gL~fFy~~~C~~C~~~apil~~fa~~ygi~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~L 219 (256)
T TIGR02739 153 GLFFFYRGKSPISQKMAPVIQAFAKEYGISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYL 219 (256)
T ss_pred eEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEE
Confidence 48888899999999876666 678999999999854 11 11 22334457889999997
No 234
>COG5429 Uncharacterized secreted protein [Function unknown]
Probab=75.08 E-value=3 Score=45.28 Aligned_cols=65 Identities=20% Similarity=0.237 Sum_probs=41.0
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcCCceE----EEEcC-------C-------ChhHHHHHHHHhCCCC--cceEEEcCe
Q 002682 425 GRVILYTRLGCQESREVRLFLYWKRLRYV----EINID-------V-------YPSRKMELEKFAGSSA--VPKVFFNEI 484 (893)
Q Consensus 425 gkVvLYTksgCP~CkrAK~lL~e~GI~Ye----eIDId-------~-------d~e~r~EL~k~sG~~T--VPqIFInGk 484 (893)
+=|.|||..+|..|--|-+.|.++--+-. .+.|+ . +.+++..+.+..|.++ .||+|+||+
T Consensus 43 ~VVELfTSQGCsSCPPAd~~l~k~a~~~~vlALsyhVdYWdYlGWkDtlar~enTeRQ~aY~~a~g~~~vyTPQavvnGr 122 (261)
T COG5429 43 GVVELFTSQGCSSCPPADANLAKLADDPGVLALSYHVDYWDYLGWKDTLARKENTERQRAYARAFGARGVYTPQAVVNGR 122 (261)
T ss_pred eEEEEeecCCcCCCChHHHHHHHhccCCCEEEEEEeecccccCCccccccchhhhHHHHHHHHhhccCCCCCchheeech
Confidence 34899999999999999999987533211 11222 2 2344444555556543 499999995
Q ss_pred e-eccc
Q 002682 485 L-MGGL 489 (893)
Q Consensus 485 ~-IGG~ 489 (893)
. .-|.
T Consensus 123 ~~~~Ga 128 (261)
T COG5429 123 VHANGA 128 (261)
T ss_pred hhhcCC
Confidence 3 3443
No 235
>PTZ00102 disulphide isomerase; Provisional
Probab=74.26 E-value=4.8 Score=46.33 Aligned_cols=51 Identities=12% Similarity=0.093 Sum_probs=35.2
Q ss_pred EEEEEcCCChhHHHHHHHHHhc--------CCceEEEEcCCChhHHHHHHHHhCCCCcceEEE
Q 002682 427 VILYTRLGCQESREVRLFLYWK--------RLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF 481 (893)
Q Consensus 427 VvLYTksgCP~CkrAK~lL~e~--------GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFI 481 (893)
++.|..+||++|+.....|.+. .+.+..+|.+.+... ....+.+.+|++++
T Consensus 379 lv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~~----~~~~~v~~~Pt~~~ 437 (477)
T PTZ00102 379 LLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANETP----LEEFSWSAFPTILF 437 (477)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCccc----hhcCCCcccCeEEE
Confidence 7788899999999888877653 244556676654432 23346778898865
No 236
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=73.05 E-value=9 Score=32.81 Aligned_cols=48 Identities=19% Similarity=0.250 Sum_probs=30.7
Q ss_pred EcCCChhHHHHHHHHHhc------CCceEEEEcC-CChhHHHHHHHHhCCCCcceEE
Q 002682 431 TRLGCQESREVRLFLYWK------RLRYVEINID-VYPSRKMELEKFAGSSAVPKVF 480 (893)
Q Consensus 431 TksgCP~CkrAK~lL~e~------GI~YeeIDId-~d~e~r~EL~k~sG~~TVPqIF 480 (893)
..+|||+|..+...|.+. ++.+..+++. ........+.. ....+|.+.
T Consensus 40 ~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~--~~~~~p~~~ 94 (127)
T COG0526 40 WAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDENPDLAAEFGV--AVRSIPTLL 94 (127)
T ss_pred EcCcCHHHHhhchhHHHHHHHhcCCcEEEEEECCCCChHHHHHHhh--hhccCCeEE
Confidence 499999999988777653 3667778875 44444443332 134456665
No 237
>COG5422 ROM1 RhoGEF, Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases [Signal transduction mechanisms]
Probab=72.85 E-value=0.39 Score=59.34 Aligned_cols=77 Identities=23% Similarity=0.285 Sum_probs=68.5
Q ss_pred HHHHHHHHHhccCCceeeccccceeeecccccchhHHHHHHhh-cccCHHHHHHHHHHHHhcccccccccccccccCC
Q 002682 534 IDELALIVLKMKENVVVKDRFYKMRRFTNCFLGSEAVNFLSED-QYLEREEAVEFGRKLASKLFFRHVLDENLFEDGN 610 (893)
Q Consensus 534 l~eLa~iv~~mk~gi~IKDRr~~LrtYk~CF~GsELVDWLie~-~v~sReEAv~lGQ~Lld~glI~hV~~~~~F~Dg~ 610 (893)
..-|.+++-.++..+.+.+|+...-.|+..|+|+++|+-|+-- ...+|.=|+-+|..|-.++++|.|+.+|..+|+.
T Consensus 275 pAlLS~vA~efk~~l~lg~~~Kdgl~y~daFtGseavdvl~~Ii~t~DrnLalL~grsldaqK~fhDV~y~hrlrds~ 352 (1175)
T COG5422 275 PALLSRVAVEFKMRLQLGDHKKDGLLYRDAFTGSEAVDVLMLIIRTSDRNLALLNGRSLDAQKLFHDVTYDHRLRDSR 352 (1175)
T ss_pred HHHHHHHHHHHHHHHhhcchhhhhHHHHhhhccchhhHhhhhhhhccccceeeeecccccchhhhhhhhhhhhccccH
Confidence 4677788888899999999999999999999999999999876 5678888999999999999999999998877763
No 238
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=72.84 E-value=8.8 Score=38.67 Aligned_cols=36 Identities=11% Similarity=0.115 Sum_probs=25.1
Q ss_pred EEEEEcCCChhHHHHHHHHHh--------------cCCceEEEEcCCChh
Q 002682 427 VILYTRLGCQESREVRLFLYW--------------KRLRYVEINIDVYPS 462 (893)
Q Consensus 427 VvLYTksgCP~CkrAK~lL~e--------------~GI~YeeIDId~d~e 462 (893)
++-|..+|||.|++..-.|.+ .++.+..|+++.+.+
T Consensus 29 lL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~ 78 (146)
T cd03008 29 LLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQ 78 (146)
T ss_pred EEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHH
Confidence 556778999999988877754 145666666665543
No 239
>PHA03075 glutaredoxin-like protein; Provisional
Probab=72.32 E-value=4.3 Score=39.84 Aligned_cols=35 Identities=20% Similarity=0.240 Sum_probs=29.5
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHhcCCceEEEEc
Q 002682 423 MKGRVILYTRLGCQESREVRLFLYWKRLRYVEINI 457 (893)
Q Consensus 423 MkgkVvLYTksgCP~CkrAK~lL~e~GI~YeeIDI 457 (893)
|+..+++|++|.|+-|.-+.++|....=+|+..-|
T Consensus 1 mK~tLILfGKP~C~vCe~~s~~l~~ledeY~ilrV 35 (123)
T PHA03075 1 MKKTLILFGKPLCSVCESISEALKELEDEYDILRV 35 (123)
T ss_pred CCceEEEeCCcccHHHHHHHHHHHHhhccccEEEE
Confidence 67789999999999999999999887766765433
No 240
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=71.32 E-value=17 Score=35.03 Aligned_cols=43 Identities=23% Similarity=0.220 Sum_probs=30.2
Q ss_pred EEEEEcC-CChhHHHHHHHH-------HhcCCceEEEEcCCChhHHHHHHH
Q 002682 427 VILYTRL-GCQESREVRLFL-------YWKRLRYVEINIDVYPSRKMELEK 469 (893)
Q Consensus 427 VvLYTks-gCP~CkrAK~lL-------~e~GI~YeeIDId~d~e~r~EL~k 469 (893)
|+.|..+ |||.|....-.| ...|+.+..+..+.++..++.+.+
T Consensus 32 vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~ 82 (146)
T PF08534_consen 32 VVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKK 82 (146)
T ss_dssp EEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHH
T ss_pred EEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHh
Confidence 5566667 999997655333 446788888988888775555544
No 241
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=70.55 E-value=4.7 Score=43.71 Aligned_cols=33 Identities=9% Similarity=0.129 Sum_probs=23.6
Q ss_pred CcEEEEEcCCChhHHHHHHHHHh---c-CCceEEEEc
Q 002682 425 GRVILYTRLGCQESREVRLFLYW---K-RLRYVEINI 457 (893)
Q Consensus 425 gkVvLYTksgCP~CkrAK~lL~e---~-GI~YeeIDI 457 (893)
..|++||-+.||||+++..-+.. . +|.+..+.+
T Consensus 119 ~~I~vFtDp~CpyC~kl~~~l~~~~~~g~V~v~~ip~ 155 (251)
T PRK11657 119 RIVYVFADPNCPYCKQFWQQARPWVDSGKVQLRHILV 155 (251)
T ss_pred eEEEEEECCCChhHHHHHHHHHHHhhcCceEEEEEec
Confidence 35999999999999998766543 2 255555543
No 242
>PF10568 Tom37: Outer mitochondrial membrane transport complex protein; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=69.24 E-value=14 Score=32.90 Aligned_cols=54 Identities=11% Similarity=0.183 Sum_probs=44.3
Q ss_pred ChhHHHHHHHHHhcCCc---eEEEEcCCChhHHHHHHHHhCCCCcceEEE-cCeeecccHhHHHhH
Q 002682 435 CQESREVRLFLYWKRLR---YVEINIDVYPSRKMELEKFAGSSAVPKVFF-NEILMGGLSELKALD 496 (893)
Q Consensus 435 CP~CkrAK~lL~e~GI~---YeeIDId~d~e~r~EL~k~sG~~TVPqIFI-nGk~IGG~DeL~el~ 496 (893)
-|.|-.+..+|+-.+.+ |+.+-.. ++. .+....+|.+.. +|+.+.||.++.++.
T Consensus 14 d~ecLa~~~yl~~~~~~~~~~~vv~s~-n~~-------~Sptg~LP~L~~~~~~~vsg~~~Iv~yL 71 (72)
T PF10568_consen 14 DPECLAVIAYLKFAGAPEQQFKVVPSN-NPW-------LSPTGELPALIDSGGTWVSGFRNIVEYL 71 (72)
T ss_pred CHHHHHHHHHHHhCCCCCceEEEEEcC-CCC-------cCCCCCCCEEEECCCcEEECHHHHHHhh
Confidence 47899999999999999 7766654 232 355678999999 999999999988765
No 243
>COG4837 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=68.38 E-value=27 Score=33.33 Aligned_cols=71 Identities=17% Similarity=0.361 Sum_probs=44.4
Q ss_pred cEEEEEcCC-ChhH------HHHHHHHHh--------cCCceEEEEcCCChh--HHHHHH-HHh-CCCCcceEEEcCeee
Q 002682 426 RVILYTRLG-CQES------REVRLFLYW--------KRLRYVEINIDVYPS--RKMELE-KFA-GSSAVPKVFFNEILM 486 (893)
Q Consensus 426 kVvLYTksg-CP~C------krAK~lL~e--------~GI~YeeIDId~d~e--~r~EL~-k~s-G~~TVPqIFInGk~I 486 (893)
+++||+... |..| +...+||+. ....|+.|||...+. ...++. ++. .-.-.|.|.++|+.|
T Consensus 6 ~l~VyGae~iCASCV~aPtsKdt~eWLeaalkRKyp~~~F~~~YiDI~n~~~e~~~~~~aekI~~dey~YPlivvedeiV 85 (106)
T COG4837 6 KLVVYGAEVICASCVNAPTSKDTYEWLEAALKRKYPNQPFKYTYIDITNPPLEDHDLQFAEKIEQDEYFYPLIVVEDEIV 85 (106)
T ss_pred EEEEecchhhhHHhcCCCcchhHHHHHHHHHhccCCCCCcEEEEEEcCCCccHHHHHHHHHHHhcccccceEEEEcceEe
Confidence 477888764 7777 556677765 234478899964432 222232 222 345679999999999
Q ss_pred c-ccHhHHHhH
Q 002682 487 G-GLSELKALD 496 (893)
Q Consensus 487 G-G~DeL~el~ 496 (893)
+ |.-.|++.+
T Consensus 86 aeGnprlKdiy 96 (106)
T COG4837 86 AEGNPRLKDIY 96 (106)
T ss_pred ecCCchHHHHH
Confidence 6 555554443
No 244
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=67.15 E-value=11 Score=33.63 Aligned_cols=34 Identities=12% Similarity=0.159 Sum_probs=22.2
Q ss_pred EEEEEcCCChhHHHHHHHHHh--------cCCceEEEEcCCC
Q 002682 427 VILYTRLGCQESREVRLFLYW--------KRLRYVEINIDVY 460 (893)
Q Consensus 427 VvLYTksgCP~CkrAK~lL~e--------~GI~YeeIDId~d 460 (893)
++.|..+||+.|.+....|.+ .++.+..|.++.+
T Consensus 5 ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~ 46 (95)
T PF13905_consen 5 LLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDED 46 (95)
T ss_dssp EEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSS
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCC
Confidence 677889999999887776654 2444555666544
No 245
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=66.46 E-value=21 Score=34.89 Aligned_cols=57 Identities=14% Similarity=0.108 Sum_probs=40.6
Q ss_pred EEEEEc--CCCh---hHHHHHHHHHhc--CCceEEEEcCCChh-HHHHHHHHhCCC--CcceEE--EcC
Q 002682 427 VILYTR--LGCQ---ESREVRLFLYWK--RLRYVEINIDVYPS-RKMELEKFAGSS--AVPKVF--FNE 483 (893)
Q Consensus 427 VvLYTk--sgCP---~CkrAK~lL~e~--GI~YeeIDId~d~e-~r~EL~k~sG~~--TVPqIF--InG 483 (893)
++.|.. |||+ +|++...-+... .|.+-.||++...+ .-.+|.+.+|.. .+|+|. .+|
T Consensus 22 lV~F~A~~Pwc~k~~~~~~LA~e~~~aa~~v~lakVd~~d~~~~~~~~L~~~y~I~~~gyPTl~lF~~g 90 (116)
T cd03007 22 LVKFDTAYPYGEKHEAFTRLAESSASATDDLLVAEVGIKDYGEKLNMELGERYKLDKESYPVIYLFHGG 90 (116)
T ss_pred EEEEeCCCCCCCChHHHHHHHHHHHhhcCceEEEEEecccccchhhHHHHHHhCCCcCCCCEEEEEeCC
Confidence 678888 9999 898887665443 37788888864333 224677888988 999875 455
No 246
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=66.40 E-value=14 Score=44.11 Aligned_cols=80 Identities=11% Similarity=0.086 Sum_probs=48.8
Q ss_pred EEEEEcCCChhHH-------HHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCCCCcceEE--EcCeeecccHhHHHhHh
Q 002682 427 VILYTRLGCQESR-------EVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVF--FNEILMGGLSELKALDE 497 (893)
Q Consensus 427 VvLYTksgCP~Ck-------rAK~lL~e~GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIF--InGk~IGG~DeL~el~e 497 (893)
.+-|..|||.+|+ +|-..|.+.|=+....-||...+ ..+...++.+.+|++. .||+...-|. .
T Consensus 46 lVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~--~~~~~~y~v~gyPTlkiFrnG~~~~~Y~------G 117 (493)
T KOG0190|consen 46 LVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEE--SDLASKYEVRGYPTLKIFRNGRSAQDYN------G 117 (493)
T ss_pred EEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchh--hhhHhhhcCCCCCeEEEEecCCcceecc------C
Confidence 4678889999996 56678888744444444443333 4466667888888865 5776411111 1
Q ss_pred cCcchHHHHHHHhcCCC
Q 002682 498 SGKLDEKIEYLITEAPP 514 (893)
Q Consensus 498 sGeL~~lLk~~~~~aps 514 (893)
--+.+.++..+++...|
T Consensus 118 ~r~adgIv~wl~kq~gP 134 (493)
T KOG0190|consen 118 PREADGIVKWLKKQSGP 134 (493)
T ss_pred cccHHHHHHHHHhccCC
Confidence 11456777777765543
No 247
>KOG4420 consensus Uncharacterized conserved protein (Ganglioside-induced differentiation associated protein 1, GDAP1) [Function unknown]
Probab=65.96 E-value=4.6 Score=44.55 Aligned_cols=72 Identities=15% Similarity=0.251 Sum_probs=59.1
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCC--hhHHHHHHHHhCCCCcceEEEcCeeecccHhHHHhHhc
Q 002682 427 VILYTRLGCQESREVRLFLYWKRLRYVEINIDVY--PSRKMELEKFAGSSAVPKVFFNEILMGGLSELKALDES 498 (893)
Q Consensus 427 VvLYTksgCP~CkrAK~lL~e~GI~YeeIDId~d--~e~r~EL~k~sG~~TVPqIFInGk~IGG~DeL~el~es 498 (893)
.++|--|..-.+++|+-.+.++||.|+.++|+.- .-.-..+...+....||++.-+...|-.++.+.++.++
T Consensus 27 ~vLyhhpysf~sQkVrlvi~EK~id~~~y~V~l~~geh~epwFmrlNp~gevPVl~~g~~II~d~tqIIdYvEr 100 (325)
T KOG4420|consen 27 LVLYHHPYSFSSQKVRLVIAEKGIDCEEYDVSLPQGEHKEPWFMRLNPGGEVPVLIHGDNIISDYTQIIDYVER 100 (325)
T ss_pred ceeeecCcccccceeeeehhhcccccceeeccCccccccCchheecCCCCCCceEecCCeecccHHHHHHHHHH
Confidence 6799999999999999999999999999999732 22234566777778999988888888889888888775
No 248
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=65.19 E-value=5 Score=39.27 Aligned_cols=50 Identities=12% Similarity=0.125 Sum_probs=26.2
Q ss_pred cCCChhHHHHHHHHH----hc--CCceEEEEcCCChhHHH---HHHH--HhCCCCcceEEE
Q 002682 432 RLGCQESREVRLFLY----WK--RLRYVEINIDVYPSRKM---ELEK--FAGSSAVPKVFF 481 (893)
Q Consensus 432 ksgCP~CkrAK~lL~----e~--GI~YeeIDId~d~e~r~---EL~k--~sG~~TVPqIFI 481 (893)
++|||+|.+|.-+++ .. +..+..+.|...+..++ .++. ......||+++-
T Consensus 35 ~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~p~~~l~~IPTLi~ 95 (119)
T PF06110_consen 35 QSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTDPDLKLKGIPTLIR 95 (119)
T ss_dssp -BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH--CC---SSSEEEE
T ss_pred CcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEcceeeeeecceEEE
Confidence 369999999985554 32 45566777753332221 3333 245678999984
No 249
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=64.96 E-value=13 Score=40.63 Aligned_cols=56 Identities=11% Similarity=0.148 Sum_probs=40.0
Q ss_pred cEEEEEcCCChhHHHHHHHH----HhcCCceEEEEcCCC--hhH---H--HHHHHHhCCCCcceEEE
Q 002682 426 RVILYTRLGCQESREVRLFL----YWKRLRYVEINIDVY--PSR---K--MELEKFAGSSAVPKVFF 481 (893)
Q Consensus 426 kVvLYTksgCP~CkrAK~lL----~e~GI~YeeIDId~d--~e~---r--~EL~k~sG~~TVPqIFI 481 (893)
.++.|.++.||||++.--+| +++|+++.-|.+|.. +.. + ....+..|...+|.+|+
T Consensus 146 GL~fFy~s~Cp~C~~~aPil~~fa~~yg~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~L 212 (248)
T PRK13703 146 GLMFFYRGQDPIDGQLAQVINDFRDTYGLSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALML 212 (248)
T ss_pred eEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEE
Confidence 58889999999998766555 568999988888742 211 1 11224567889999996
No 250
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=62.32 E-value=22 Score=33.84 Aligned_cols=52 Identities=17% Similarity=0.151 Sum_probs=30.1
Q ss_pred EEEEE-cCCChhHHHHHHHH-------HhcCCceEEEEcCCChhHHHHHHHHhCCCCcceEE
Q 002682 427 VILYT-RLGCQESREVRLFL-------YWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVF 480 (893)
Q Consensus 427 VvLYT-ksgCP~CkrAK~lL-------~e~GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIF 480 (893)
|++|. ..|||.|..-...| ...|+.+.-|..+...... .+.+..+ .++|.+.
T Consensus 27 vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~~~~-~~~~~~~-~~~p~~~ 86 (149)
T cd02970 27 VVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESPEKLE-AFDKGKF-LPFPVYA 86 (149)
T ss_pred EEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHHHHH-HHHHhcC-CCCeEEE
Confidence 44443 68999998644433 3467777777766544333 3333333 4577554
No 251
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=59.14 E-value=37 Score=33.84 Aligned_cols=32 Identities=22% Similarity=0.300 Sum_probs=20.5
Q ss_pred EEEEEcCCChhHHHHHHHHHh-------cCCceEEEEcC
Q 002682 427 VILYTRLGCQESREVRLFLYW-------KRLRYVEINID 458 (893)
Q Consensus 427 VvLYTksgCP~CkrAK~lL~e-------~GI~YeeIDId 458 (893)
|+.|..+|||.|.+...-|.+ .++.+.-+.++
T Consensus 29 ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d 67 (171)
T cd02969 29 VVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSN 67 (171)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecC
Confidence 667778999999754333322 35666666664
No 252
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=56.11 E-value=36 Score=31.35 Aligned_cols=53 Identities=21% Similarity=0.104 Sum_probs=29.8
Q ss_pred EEEEEcC-CChhHHHHHHHH-------HhcCCceEEEEcCCChhHHHHHHHHhCCCCcceEEE
Q 002682 427 VILYTRL-GCQESREVRLFL-------YWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF 481 (893)
Q Consensus 427 VvLYTks-gCP~CkrAK~lL-------~e~GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFI 481 (893)
|+.|... |||.|......| +..|+.+..+..+...+.++.+.+ .+ ..+|.+.-
T Consensus 29 vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~-~~-~~~~~~~D 89 (124)
T PF00578_consen 29 VLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEE-YG-LPFPVLSD 89 (124)
T ss_dssp EEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHH-HT-CSSEEEEE
T ss_pred EEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhh-hc-cccccccC
Confidence 4445555 999996544333 345777777777554444443333 33 45565544
No 253
>smart00594 UAS UAS domain.
Probab=54.96 E-value=41 Score=32.19 Aligned_cols=51 Identities=10% Similarity=0.178 Sum_probs=33.1
Q ss_pred EEEEEcCCChhHHHHH----------HHHHhcCCceEE--EEcCCChhHHHHHHHHhCCCCcceEEEc
Q 002682 427 VILYTRLGCQESREVR----------LFLYWKRLRYVE--INIDVYPSRKMELEKFAGSSAVPKVFFN 482 (893)
Q Consensus 427 VvLYTksgCP~CkrAK----------~lL~e~GI~Yee--IDId~d~e~r~EL~k~sG~~TVPqIFIn 482 (893)
++.+..+||++|.... ++|++ .|.. +|+...+. ..+....+..++|.+.+=
T Consensus 31 lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~---~fv~~~~dv~~~eg--~~l~~~~~~~~~P~~~~l 93 (122)
T smart00594 31 WLYLHSQDSPDSQVFNRDVLCNEAVKSLIRE---NFIFWQVDVDTSEG--QRVSQFYKLDSFPYVAIV 93 (122)
T ss_pred EEEEeCCCCchHHHHHHHHccCHHHHHHHHc---CEEEEEecCCChhH--HHHHHhcCcCCCCEEEEE
Confidence 6666778999997643 44444 2444 45544333 357777788899998763
No 254
>PTZ00056 glutathione peroxidase; Provisional
Probab=53.48 E-value=33 Score=35.86 Aligned_cols=31 Identities=10% Similarity=0.018 Sum_probs=20.5
Q ss_pred EEEEEcCCChhHHHHHHHH-------HhcCCceEEEEc
Q 002682 427 VILYTRLGCQESREVRLFL-------YWKRLRYVEINI 457 (893)
Q Consensus 427 VvLYTksgCP~CkrAK~lL-------~e~GI~YeeIDI 457 (893)
|+.|..+|||.|.+-...| ...|+.+.-+++
T Consensus 43 lv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~ 80 (199)
T PTZ00056 43 MITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPT 80 (199)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecc
Confidence 6667889999998633333 334676666665
No 255
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=53.29 E-value=29 Score=41.91 Aligned_cols=21 Identities=10% Similarity=-0.230 Sum_probs=16.9
Q ss_pred EEEEEcCCChhHHHHHHHHHh
Q 002682 427 VILYTRLGCQESREVRLFLYW 447 (893)
Q Consensus 427 VvLYTksgCP~CkrAK~lL~e 447 (893)
|+-|..+|||.|++..-.|.+
T Consensus 60 vV~FWATWCppCk~emP~L~e 80 (521)
T PRK14018 60 LIKFWASWCPLCLSELGETEK 80 (521)
T ss_pred EEEEEcCCCHHHHHHHHHHHH
Confidence 667889999999997766654
No 256
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=49.81 E-value=44 Score=31.66 Aligned_cols=46 Identities=9% Similarity=-0.044 Sum_probs=26.2
Q ss_pred cCCChhHHHH-------HHHHHhcCCceEEEEcCCChhHHHHHHHHhCCCCcceE
Q 002682 432 RLGCQESREV-------RLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKV 479 (893)
Q Consensus 432 ksgCP~CkrA-------K~lL~e~GI~YeeIDId~d~e~r~EL~k~sG~~TVPqI 479 (893)
..|||.|... ...|...|+.+.-+.++.....++ +.+..+ ..+|.+
T Consensus 33 ~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~-~~~~~~-~~~~~l 85 (140)
T cd03017 33 KDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAK-FAEKYG-LPFPLL 85 (140)
T ss_pred CCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHH-HHHHhC-CCceEE
Confidence 5789999753 333455677777777765444443 333334 346633
No 257
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=49.48 E-value=87 Score=35.80 Aligned_cols=34 Identities=29% Similarity=0.385 Sum_probs=26.2
Q ss_pred cccch-----hHHHHHHhhcc-cCHHHHHHHHHHHHhccc
Q 002682 563 CFLGS-----EAVNFLSEDQY-LEREEAVEFGRKLASKLF 596 (893)
Q Consensus 563 CF~Gs-----ELVDWLie~~v-~sReEAv~lGQ~Lld~gl 596 (893)
.|+|+ +++.|+.+..+ .=|+=..+-+..|.+.|+
T Consensus 189 ~f~G~~~nf~el~~Wi~dKcvpLVREiTFeN~EELtEEGl 228 (375)
T KOG0912|consen 189 EFLGSMTNFDELKQWIQDKCVPLVREITFENAEELTEEGL 228 (375)
T ss_pred ccccccccHHHHHHHHHhcchhhhhhhhhccHHHHhhcCC
Confidence 57776 89999998843 346777778888888886
No 258
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=49.20 E-value=22 Score=35.06 Aligned_cols=24 Identities=25% Similarity=0.330 Sum_probs=19.5
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHh
Q 002682 424 KGRVILYTRLGCQESREVRLFLYW 447 (893)
Q Consensus 424 kgkVvLYTksgCP~CkrAK~lL~e 447 (893)
+..|+.|+-..||+|.++...+..
T Consensus 16 ~~~i~~f~D~~Cp~C~~~~~~~~~ 39 (178)
T cd03019 16 KPEVIEFFSYGCPHCYNFEPILEA 39 (178)
T ss_pred CcEEEEEECCCCcchhhhhHHHHH
Confidence 346999999999999988776654
No 259
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.94 E-value=11 Score=37.42 Aligned_cols=50 Identities=18% Similarity=0.279 Sum_probs=29.5
Q ss_pred cCCChhHHHHHHHHHh------cCCceEEEEcCCChhHHH---HHHHHhCC-CCcceEEE
Q 002682 432 RLGCQESREVRLFLYW------KRLRYVEINIDVYPSRKM---ELEKFAGS-SAVPKVFF 481 (893)
Q Consensus 432 ksgCP~CkrAK~lL~e------~GI~YeeIDId~d~e~r~---EL~k~sG~-~TVPqIFI 481 (893)
.+|||+|.+|.-.+.+ .++.|..++|...|..+. .++.-.+. ..||++.-
T Consensus 42 qSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~FR~d~~~lt~vPTLlr 101 (128)
T KOG3425|consen 42 QSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPFRKDPGILTAVPTLLR 101 (128)
T ss_pred CcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCccccCCCceeecceeeE
Confidence 3799999999876654 355577777765443321 12222233 45777763
No 260
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=48.68 E-value=23 Score=37.37 Aligned_cols=23 Identities=30% Similarity=0.504 Sum_probs=19.1
Q ss_pred HhCCCCcceEEEcCeeecccHhH
Q 002682 470 FAGSSAVPKVFFNEILMGGLSEL 492 (893)
Q Consensus 470 ~sG~~TVPqIFInGk~IGG~DeL 492 (893)
..|....|.+||+|+.++|+-.+
T Consensus 210 ~~gv~gTPt~~v~~~~~~g~~~~ 232 (244)
T COG1651 210 QLGVNGTPTFIVNGKLVPGLPDL 232 (244)
T ss_pred hcCCCcCCeEEECCeeecCCCCH
Confidence 34788999999999988887653
No 261
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=48.26 E-value=38 Score=32.54 Aligned_cols=45 Identities=13% Similarity=-0.062 Sum_probs=25.1
Q ss_pred cCCChhHHHHHHHH-------HhcCCceEEEEcCCChhHHHHHHHHhCCCCcce
Q 002682 432 RLGCQESREVRLFL-------YWKRLRYVEINIDVYPSRKMELEKFAGSSAVPK 478 (893)
Q Consensus 432 ksgCP~CkrAK~lL-------~e~GI~YeeIDId~d~e~r~EL~k~sG~~TVPq 478 (893)
.+|||.|.+....| ...|+.+.-+.++.....++ +.+..+ ..+|.
T Consensus 38 ~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~-~~~~~~-~~~~~ 89 (149)
T cd03018 38 LAFTPVCTKELCALRDSLELFEAAGAEVLGISVDSPFSLRA-WAEENG-LTFPL 89 (149)
T ss_pred CCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCHHHHHH-HHHhcC-CCceE
Confidence 78999997554333 33477766666654334333 333334 34554
No 262
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=47.53 E-value=19 Score=41.65 Aligned_cols=61 Identities=28% Similarity=0.273 Sum_probs=39.8
Q ss_pred cEEEEEcCCChhHHHHHHHHHhc---CCceEEEEcCCChhHHHHHHHHhCCCCcceEEEcCeeecc
Q 002682 426 RVILYTRLGCQESREVRLFLYWK---RLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILMGG 488 (893)
Q Consensus 426 kVvLYTksgCP~CkrAK~lL~e~---GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFInGk~IGG 488 (893)
...-|..-+|..|-.+.+.|.-. +-...-.-|+ ..-.++|+..+ +...||+||.||+.+|.
T Consensus 119 ~FETy~SltC~nCPDVVQALN~msvlNp~I~H~~Id-Ga~Fq~Evear-~IMaVPtvflnGe~fg~ 182 (520)
T COG3634 119 HFETYFSLTCHNCPDVVQALNLMSVLNPRIKHTAID-GALFQDEVEAR-NIMAVPTVFLNGEEFGQ 182 (520)
T ss_pred eEEEEEEeeccCChHHHHHHHHHHhcCCCceeEEec-chhhHhHHHhc-cceecceEEEcchhhcc
Confidence 35567777777777666666543 3334444443 23345666553 77899999999998874
No 263
>PLN02412 probable glutathione peroxidase
Probab=47.45 E-value=48 Score=33.48 Aligned_cols=53 Identities=6% Similarity=-0.066 Sum_probs=30.3
Q ss_pred EEEEEcCCChhHHHHH-------HHHHhcCCceEEEEcCC-------C-hhHHHHHHHHhCCCCcceEE
Q 002682 427 VILYTRLGCQESREVR-------LFLYWKRLRYVEINIDV-------Y-PSRKMELEKFAGSSAVPKVF 480 (893)
Q Consensus 427 VvLYTksgCP~CkrAK-------~lL~e~GI~YeeIDId~-------d-~e~r~EL~k~sG~~TVPqIF 480 (893)
|+.|..+|||.|.+-. +-+...|+.+.-++.+. . .+....+.+..| .++|.+.
T Consensus 33 lv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~~~~~~~~~~~~~~~~~~~~~~~-~~fpvl~ 100 (167)
T PLN02412 33 LIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCNQFLGQEPGSNEEIQQTVCTRFK-AEFPIFD 100 (167)
T ss_pred EEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEecccccccCCCCCHHHHHHHHHHccC-CCCceEe
Confidence 5557799999998633 22334566666666532 1 232333333334 5789875
No 264
>TIGR00869 sec62 protein translocation protein, Sec62 family. protein secretary systems of yeast microsomes. They are also the non-selective cation (NS) channels of the mammalian cytoplasmic membrane. The yeast Sec62 protein has been shown to be essential for cell growth. The mammalian NS channel proteins has been implicated in platelet derived growth factor(PGDF) dependent single channel current in fibroblasts. These channels are essentially closed in serum deprived tissue-culture cells and are specifically opened by exposure to PDGF. These channels are reported to exhibit equal selectivity for Na+, K+ and Cs+ with low permeability to Ca2+, and no permeability to anions.
Probab=47.02 E-value=18 Score=39.45 Aligned_cols=41 Identities=22% Similarity=0.121 Sum_probs=34.9
Q ss_pred ccccchhHHHHHHhh--------------cccCHHHHHHHHHHHHhccccccccc
Q 002682 562 NCFLGSEAVNFLSED--------------QYLEREEAVEFGRKLASKLFFRHVLD 602 (893)
Q Consensus 562 ~CF~GsELVDWLie~--------------~v~sReEAv~lGQ~Lld~glI~hV~~ 602 (893)
.=|.|.++|+||++. .+.+|++|.+++..|+.++++..|..
T Consensus 20 eyFRgkr~vraL~s~~y~~~~~k~~~~lp~i~~r~da~~~~~~Li~~~l~~R~~k 74 (232)
T TIGR00869 20 DFFRVKRFVRALHSEEYANKSAKQPEIYPTIPSRLEAIEIFILLIKNQMVIRVDK 74 (232)
T ss_pred EEeeHHHHHHHHhCcHhhhhcccCcccCCCCCCHHHHHHHHHHHHHcCCEEEEEe
Confidence 358899999999963 13569999999999999999999865
No 265
>PTZ00256 glutathione peroxidase; Provisional
Probab=46.96 E-value=46 Score=34.10 Aligned_cols=52 Identities=13% Similarity=0.086 Sum_probs=29.7
Q ss_pred EEEEcCCChhHHHHHHHH-------HhcCCceEEEEcCC-------C-hhHHHHHHHHhCCCCcceEE
Q 002682 428 ILYTRLGCQESREVRLFL-------YWKRLRYVEINIDV-------Y-PSRKMELEKFAGSSAVPKVF 480 (893)
Q Consensus 428 vLYTksgCP~CkrAK~lL-------~e~GI~YeeIDId~-------d-~e~r~EL~k~sG~~TVPqIF 480 (893)
++|..+|||.|.+-...| ...|+.+.-++++. + ...+..+.+..| .++|.+.
T Consensus 46 v~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~~~~~~~~~~~~~~~~f~~~~~~-~~fpv~~ 112 (183)
T PTZ00256 46 VVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCNQFMEQEPWDEPEIKEYVQKKFN-VDFPLFQ 112 (183)
T ss_pred EEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecccccccCCCCHHHHHHHHHHhcC-CCCCCce
Confidence 356899999998644333 34577776666531 1 233333333334 4688863
No 266
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=46.26 E-value=66 Score=30.43 Aligned_cols=20 Identities=10% Similarity=0.194 Sum_probs=15.2
Q ss_pred EEEEEcCCChhHHHHHHHHH
Q 002682 427 VILYTRLGCQESREVRLFLY 446 (893)
Q Consensus 427 VvLYTksgCP~CkrAK~lL~ 446 (893)
|+.|..+|||.|.+....|.
T Consensus 27 vl~F~a~~C~~C~~~~p~l~ 46 (126)
T cd03012 27 LLDFWTYCCINCLHTLPYLT 46 (126)
T ss_pred EEEEECCCCccHHHHHHHHH
Confidence 67778899999987655553
No 267
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=45.02 E-value=54 Score=30.93 Aligned_cols=47 Identities=9% Similarity=-0.064 Sum_probs=26.5
Q ss_pred cCCChhHHHHHHHH-------HhcCCceEEEEcCCChhHHHHHHHHhCCCCcceE
Q 002682 432 RLGCQESREVRLFL-------YWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKV 479 (893)
Q Consensus 432 ksgCP~CkrAK~lL-------~e~GI~YeeIDId~d~e~r~EL~k~sG~~TVPqI 479 (893)
..|||.|.....-| +..++.+..+.++.... ...+.+..+...+|.+
T Consensus 32 ~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~~~~-~~~~~~~~~~~~~~~l 85 (140)
T cd02971 32 KDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSPFS-HKAWAEKEGGLNFPLL 85 (140)
T ss_pred CCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHH-HHHHHhcccCCCceEE
Confidence 57999997643333 34677777777754333 3333333334556644
No 268
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=44.50 E-value=97 Score=30.01 Aligned_cols=63 Identities=13% Similarity=0.121 Sum_probs=44.4
Q ss_pred CcEEEEEcCC-ChhHHHHHHHHHhc------CCceEEEEcCCChhHHHHHHHHhCC-CCcceEEE--cCeeec
Q 002682 425 GRVILYTRLG-CQESREVRLFLYWK------RLRYVEINIDVYPSRKMELEKFAGS-SAVPKVFF--NEILMG 487 (893)
Q Consensus 425 gkVvLYTksg-CP~CkrAK~lL~e~------GI~YeeIDId~d~e~r~EL~k~sG~-~TVPqIFI--nGk~IG 487 (893)
.+++||--++ ||-+..|.+-|++. ++++-.++|-.+-++-.++.+.+|. -.-||+++ ||+.+-
T Consensus 20 ~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ~ili~~g~~v~ 92 (105)
T PF11009_consen 20 KPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKHESPQVILIKNGKVVW 92 (105)
T ss_dssp SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT----SSEEEEEETTEEEE
T ss_pred CcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCcCCCcEEEEECCEEEE
Confidence 3688888776 99999998877652 3899999998888888888888885 46699886 787763
No 269
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=44.21 E-value=19 Score=35.83 Aligned_cols=19 Identities=11% Similarity=0.310 Sum_probs=15.0
Q ss_pred EEEEEcCCChhHHHHHHHH
Q 002682 427 VILYTRLGCQESREVRLFL 445 (893)
Q Consensus 427 VvLYTksgCP~CkrAK~lL 445 (893)
++++++.||++|++.++..
T Consensus 27 mv~f~sdwC~~Ck~l~k~~ 45 (130)
T cd02960 27 MVIHHLEDCPHSQALKKAF 45 (130)
T ss_pred EEEEeCCcCHhHHHHHHHh
Confidence 5567889999998887653
No 270
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=44.18 E-value=39 Score=33.77 Aligned_cols=37 Identities=5% Similarity=-0.054 Sum_probs=27.3
Q ss_pred cEEEEEcCCChhHHHHHH----HHHhc-CCceEEEEcCCChh
Q 002682 426 RVILYTRLGCQESREVRL----FLYWK-RLRYVEINIDVYPS 462 (893)
Q Consensus 426 kVvLYTksgCP~CkrAK~----lL~e~-GI~YeeIDId~d~e 462 (893)
+|++|.-..||||-.+.. ++..+ ++.++.+.+...+.
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~~l~~~ 42 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWRPFPLRPD 42 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEEEESSSTH
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEeccccccc
Confidence 489999999999965554 44556 78888777765554
No 271
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=43.42 E-value=30 Score=33.49 Aligned_cols=24 Identities=21% Similarity=0.339 Sum_probs=17.9
Q ss_pred HhCCCCcceEEEcCeeecccHhHH
Q 002682 470 FAGSSAVPKVFFNEILMGGLSELK 493 (893)
Q Consensus 470 ~sG~~TVPqIFInGk~IGG~DeL~ 493 (893)
..|...+|++||||+++.|.-++.
T Consensus 131 ~~~i~~tPt~~inG~~~~~~~~~~ 154 (162)
T PF13462_consen 131 QLGITGTPTFFINGKYVVGPYTIE 154 (162)
T ss_dssp HHT-SSSSEEEETTCEEETTTSHH
T ss_pred HcCCccccEEEECCEEeCCCCCHH
Confidence 347889999999999997654433
No 272
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=42.11 E-value=55 Score=32.17 Aligned_cols=31 Identities=13% Similarity=0.009 Sum_probs=19.7
Q ss_pred EEEEEcCCChhHHHHHHHHHh-------cCCceEEEEcC
Q 002682 427 VILYTRLGCQESREVRLFLYW-------KRLRYVEINID 458 (893)
Q Consensus 427 VvLYTksgCP~CkrAK~lL~e-------~GI~YeeIDId 458 (893)
|+.|..+||| |.+-...|.+ .|+.+.-+.++
T Consensus 26 vl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~ 63 (152)
T cd00340 26 LIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCN 63 (152)
T ss_pred EEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccC
Confidence 5567889999 9875444443 45555555543
No 273
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=40.96 E-value=69 Score=31.46 Aligned_cols=31 Identities=6% Similarity=0.031 Sum_probs=20.7
Q ss_pred EEEEEcCCChhHHHHHHHH----H---hcCCceEEEEc
Q 002682 427 VILYTRLGCQESREVRLFL----Y---WKRLRYVEINI 457 (893)
Q Consensus 427 VvLYTksgCP~CkrAK~lL----~---e~GI~YeeIDI 457 (893)
|++|..+|||+|.+...-| + ..|+.+.-++.
T Consensus 26 vv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~ 63 (153)
T TIGR02540 26 LVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPC 63 (153)
T ss_pred EEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEec
Confidence 6788899999997644333 2 34666666663
No 274
>PF10865 DUF2703: Domain of unknown function (DUF2703); InterPro: IPR021219 This family of protein has no known function.
Probab=40.64 E-value=49 Score=32.70 Aligned_cols=46 Identities=17% Similarity=0.177 Sum_probs=30.9
Q ss_pred CChhHH-----------HHHHHHHhcCCc--eEEEEcCCChhHHHHHHHHhCCCCcceEEEcCeee
Q 002682 434 GCQESR-----------EVRLFLYWKRLR--YVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILM 486 (893)
Q Consensus 434 gCP~Ck-----------rAK~lL~e~GI~--YeeIDId~d~e~r~EL~k~sG~~TVPqIFInGk~I 486 (893)
+|+-|. .++..|..+||. |+++.++.....++. -..|.|.|||+.|
T Consensus 14 tC~RC~~Tg~~L~~av~~l~~~L~~~Giev~l~~~~l~~~~~~~~~-------~~S~~I~inG~pi 72 (120)
T PF10865_consen 14 TCERCGDTGETLREAVKELAPVLAPLGIEVRLEEIELDEEEFARQP-------LESPTIRINGRPI 72 (120)
T ss_pred cCCchhhHHHHHHHHHHHHHHHHHhCCcEEEEEEEECChHHHhhcc-------cCCCeeeECCEeh
Confidence 899984 455567778998 566666543222221 5689999999854
No 275
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=40.30 E-value=63 Score=31.54 Aligned_cols=46 Identities=11% Similarity=-0.184 Sum_probs=26.8
Q ss_pred cCCChhHHH-------HHHHHHhcCCceEEEEcCCChhHHHHHHHHhCCCCcceE
Q 002682 432 RLGCQESRE-------VRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKV 479 (893)
Q Consensus 432 ksgCP~Ckr-------AK~lL~e~GI~YeeIDId~d~e~r~EL~k~sG~~TVPqI 479 (893)
..+||.|.. ..+.|...|+.+.-|.++.....++.+.+ .| .++|.+
T Consensus 40 ~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~~~~~~~~~~-~~-~~~~~l 92 (154)
T PRK09437 40 KAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKPEKLSRFAEK-EL-LNFTLL 92 (154)
T ss_pred CCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHH-hC-CCCeEE
Confidence 347999954 33445567887777777654444444433 34 356644
No 276
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=40.09 E-value=62 Score=32.42 Aligned_cols=69 Identities=10% Similarity=0.090 Sum_probs=43.0
Q ss_pred CChhHHHHHHHH----HhcC---CceEEEEcCCChhHHHHHHHHhCCCCcceEEE--cCeeecccHhHHHhHhcCcchHH
Q 002682 434 GCQESREVRLFL----YWKR---LRYVEINIDVYPSRKMELEKFAGSSAVPKVFF--NEILMGGLSELKALDESGKLDEK 504 (893)
Q Consensus 434 gCP~CkrAK~lL----~e~G---I~YeeIDId~d~e~r~EL~k~sG~~TVPqIFI--nGk~IGG~DeL~el~esGeL~~l 504 (893)
.+|.+..+--+| ++++ +.+..+|++.+++ +...+|...+|++++ ||+.+|-..-++.. .+|.++
T Consensus 47 r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~~----LA~~fgV~siPTLl~FkdGk~v~~i~G~~~k---~~l~~~ 119 (132)
T PRK11509 47 RTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEA----IGDRFGVFRFPATLVFTGGNYRGVLNGIHPW---AELINL 119 (132)
T ss_pred cCCccccHHHHHHHHHHHhcCCceEEEEEECCCCHH----HHHHcCCccCCEEEEEECCEEEEEEeCcCCH---HHHHHH
Confidence 366665444444 3333 6688888887765 556789999998765 89888755432222 245555
Q ss_pred HHHHH
Q 002682 505 IEYLI 509 (893)
Q Consensus 505 Lk~~~ 509 (893)
|+.+.
T Consensus 120 I~~~L 124 (132)
T PRK11509 120 MRGLV 124 (132)
T ss_pred HHHHh
Confidence 65554
No 277
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=38.10 E-value=95 Score=28.93 Aligned_cols=78 Identities=15% Similarity=0.123 Sum_probs=48.9
Q ss_pred EEcCCChhHHHHHHHHHhcCC--ceEEEEcCCChhHHHHHHHHhC-----CCCcceEEEcCe-eecccHhHHHhHhcCcc
Q 002682 430 YTRLGCQESREVRLFLYWKRL--RYVEINIDVYPSRKMELEKFAG-----SSAVPKVFFNEI-LMGGLSELKALDESGKL 501 (893)
Q Consensus 430 YTksgCP~CkrAK~lL~e~GI--~YeeIDId~d~e~r~EL~k~sG-----~~TVPqIFInGk-~IGG~DeL~el~esGeL 501 (893)
|.-..||+|....+++..+.. .++.+++...+.. ++.+..| ..+.-.+.-+|+ ...|.+-+..+...-..
T Consensus 2 ~YDg~C~lC~~~~~~l~~~d~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~g~~~~~G~~A~~~l~~~~~~ 79 (114)
T PF04134_consen 2 FYDGDCPLCRREVRFLRRRDRGGRLRFVDIQSEPDQ--ALLASYGISPEDADSRLHLIDDGERVYRGSDAVLRLLRRLPG 79 (114)
T ss_pred EECCCCHhHHHHHHHHHhcCCCCCEEEEECCChhhh--hHHHhcCcCHHHHcCeeEEecCCCEEEEcHHHHHHHHHHcCc
Confidence 455789999999999999875 5888888433321 1111112 233444444776 89999988887665333
Q ss_pred -hHHHHHHH
Q 002682 502 -DEKIEYLI 509 (893)
Q Consensus 502 -~~lLk~~~ 509 (893)
-.++..+.
T Consensus 80 ~~~~l~~l~ 88 (114)
T PF04134_consen 80 PWRWLAWLL 88 (114)
T ss_pred chHHHHHHH
Confidence 45554443
No 278
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=37.87 E-value=35 Score=34.10 Aligned_cols=56 Identities=20% Similarity=0.138 Sum_probs=36.3
Q ss_pred HHHHHHHhcCCceEEEE-cCCChhHHHHHHH------HhCCCCcceEEEcCeeecccHhHHHh
Q 002682 440 EVRLFLYWKRLRYVEIN-IDVYPSRKMELEK------FAGSSAVPKVFFNEILMGGLSELKAL 495 (893)
Q Consensus 440 rAK~lL~e~GI~YeeID-Id~d~e~r~EL~k------~sG~~TVPqIFInGk~IGG~DeL~el 495 (893)
....++.+.|++-..+. ...+++.++.+.+ ..|...||.++|||+.+-|.+.+..+
T Consensus 125 ~l~~~a~~~Gld~~~~~~~~~~~~~~~~l~~~~~~a~~~gi~gvPtfvv~g~~~~G~~~l~~~ 187 (192)
T cd03022 125 VLAAVAAAAGLDADELLAAADDPAVKAALRANTEEAIARGVFGVPTFVVDGEMFWGQDRLDML 187 (192)
T ss_pred HHHHHHHHcCCCHHHHHHHcCCHHHHHHHHHHHHHHHHcCCCcCCeEEECCeeecccccHHHH
Confidence 35677788888643221 1133334433332 34889999999999999998876544
No 279
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=37.25 E-value=34 Score=33.10 Aligned_cols=35 Identities=11% Similarity=0.154 Sum_probs=23.5
Q ss_pred cEEEEEcCCChhHHHHHHHH----Hhc----CCceEEEEcCCC
Q 002682 426 RVILYTRLGCQESREVRLFL----YWK----RLRYVEINIDVY 460 (893)
Q Consensus 426 kVvLYTksgCP~CkrAK~lL----~e~----GI~YeeIDId~d 460 (893)
.|++|.-..||+|.+.-..| .++ .|.|..+++..+
T Consensus 15 ~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~ 57 (162)
T PF13462_consen 15 TVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVPLD 57 (162)
T ss_dssp EEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESSSS
T ss_pred EEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEcccc
Confidence 59999999999998876554 333 455666666433
No 280
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=37.20 E-value=54 Score=36.46 Aligned_cols=75 Identities=19% Similarity=0.312 Sum_probs=47.6
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCC-----ceEEEEcCCChhHHHHHHHHhCCCCcceE--EEcCeeecccHhHHHhHhcC
Q 002682 427 VILYTRLGCQESREVRLFLYWKRL-----RYVEINIDVYPSRKMELEKFAGSSAVPKV--FFNEILMGGLSELKALDESG 499 (893)
Q Consensus 427 VvLYTksgCP~CkrAK~lL~e~GI-----~YeeIDId~d~e~r~EL~k~sG~~TVPqI--FInGk~IGG~DeL~el~esG 499 (893)
|+=||.+||+.|++.-=++..+-- -|-.+||+.-.. ...-+|...+|+. |.||..|-- ++-+..+
T Consensus 25 ~Vdfta~wCGPCk~IaP~Fs~lankYp~aVFlkVdVd~c~~----taa~~gV~amPTFiff~ng~kid~---~qGAd~~- 96 (288)
T KOG0908|consen 25 VVDFTASWCGPCKRIAPIFSDLANKYPGAVFLKVDVDECRG----TAATNGVNAMPTFIFFRNGVKIDQ---IQGADAS- 96 (288)
T ss_pred EEEEEecccchHHhhhhHHHHhhhhCcccEEEEEeHHHhhc----hhhhcCcccCceEEEEecCeEeee---ecCCCHH-
Confidence 667999999999999988877533 266788863211 2234588888875 568876631 2222222
Q ss_pred cchHHHHHHH
Q 002682 500 KLDEKIEYLI 509 (893)
Q Consensus 500 eL~~lLk~~~ 509 (893)
-|+++++...
T Consensus 97 gLe~kv~~~~ 106 (288)
T KOG0908|consen 97 GLEEKVAKYA 106 (288)
T ss_pred HHHHHHHHHh
Confidence 4566665544
No 281
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=37.07 E-value=89 Score=32.37 Aligned_cols=57 Identities=9% Similarity=0.105 Sum_probs=35.1
Q ss_pred EEcCCChhHH-------HHHHHHHhcCCceEEEEcCCChh-----------------------HHHHHHHHhCCCCcceE
Q 002682 430 YTRLGCQESR-------EVRLFLYWKRLRYVEINIDVYPS-----------------------RKMELEKFAGSSAVPKV 479 (893)
Q Consensus 430 YTksgCP~Ck-------rAK~lL~e~GI~YeeIDId~d~e-----------------------~r~EL~k~sG~~TVPqI 479 (893)
|+..|||.|+ +.-..++..+-+|+.+=|+.+.+ ..++|...++..++|.+
T Consensus 40 FsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~ky~v~~iP~l 119 (157)
T KOG2501|consen 40 FSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEKYEVKGIPAL 119 (157)
T ss_pred EEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHhcccCcCcee
Confidence 5678999996 34444555666788887764432 23344445666677776
Q ss_pred EE---cCeee
Q 002682 480 FF---NEILM 486 (893)
Q Consensus 480 FI---nGk~I 486 (893)
.+ +|..|
T Consensus 120 ~i~~~dG~~v 129 (157)
T KOG2501|consen 120 VILKPDGTVV 129 (157)
T ss_pred EEecCCCCEe
Confidence 65 55444
No 282
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=37.02 E-value=71 Score=38.45 Aligned_cols=55 Identities=20% Similarity=0.270 Sum_probs=40.3
Q ss_pred CCCc--EEEEEcCCChhHHHHHHHHHhc-----CCceEEEEcCCChhHHHHHHHHhCCCCcceEEE
Q 002682 423 MKGR--VILYTRLGCQESREVRLFLYWK-----RLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF 481 (893)
Q Consensus 423 Mkgk--VvLYTksgCP~CkrAK~lL~e~-----GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFI 481 (893)
|+++ +.+|+.+.|++|..++++|++. .|.++.+|...+.+ +.+.+|...+|.+.|
T Consensus 364 l~~~v~l~~~~~~~~~~~~e~~~~l~e~~~~s~~i~~~~~~~~~~~~----~~~~~~v~~~P~~~i 425 (555)
T TIGR03143 364 LENPVTLLLFLDGSNEKSAELQSFLGEFASLSEKLNSEAVNRGEEPE----SETLPKITKLPTVAL 425 (555)
T ss_pred cCCCEEEEEEECCCchhhHHHHHHHHHHHhcCCcEEEEEeccccchh----hHhhcCCCcCCEEEE
Confidence 5555 4568888999999999999873 56777777755433 334566777899887
No 283
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=36.53 E-value=72 Score=34.72 Aligned_cols=33 Identities=6% Similarity=-0.009 Sum_probs=22.7
Q ss_pred cEEEEEcCCChhHHHHH-------HHHHhcCCceEEEEcC
Q 002682 426 RVILYTRLGCQESREVR-------LFLYWKRLRYVEINID 458 (893)
Q Consensus 426 kVvLYTksgCP~CkrAK-------~lL~e~GI~YeeIDId 458 (893)
-|+.|..+|||.|..-. +-+...|+.+.-++++
T Consensus 102 vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d 141 (236)
T PLN02399 102 LLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCN 141 (236)
T ss_pred EEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecc
Confidence 37788899999997533 3334457777777763
No 284
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=34.96 E-value=91 Score=31.34 Aligned_cols=33 Identities=9% Similarity=-0.067 Sum_probs=20.9
Q ss_pred EEEEE--cCCChhHHHHHHHH-------HhcCCceEEEEcCC
Q 002682 427 VILYT--RLGCQESREVRLFL-------YWKRLRYVEINIDV 459 (893)
Q Consensus 427 VvLYT--ksgCP~CkrAK~lL-------~e~GI~YeeIDId~ 459 (893)
++||. ..|||.|......| ...|+.+..|.++.
T Consensus 32 vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~ 73 (173)
T cd03015 32 VVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDS 73 (173)
T ss_pred EEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCC
Confidence 44444 67999998754444 44577666666543
No 285
>cd05295 MDH_like Malate dehydrogenase-like. These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=34.33 E-value=69 Score=38.17 Aligned_cols=67 Identities=22% Similarity=0.317 Sum_probs=48.9
Q ss_pred cCCChhHHHHHHHHHhc--CCc-eEEEEcCCChhHH-HHHHHH---hCC--CCcceEEE-------cCeeecccHhHHHh
Q 002682 432 RLGCQESREVRLFLYWK--RLR-YVEINIDVYPSRK-MELEKF---AGS--SAVPKVFF-------NEILMGGLSELKAL 495 (893)
Q Consensus 432 ksgCP~CkrAK~lL~e~--GI~-YeeIDId~d~e~r-~EL~k~---sG~--~TVPqIFI-------nGk~IGG~DeL~el 495 (893)
+..|||=.+|.-+-+.+ ++| |..+-|..+|+.. ++|.++ .|| ..-|.|.- .|.++|||.|++++
T Consensus 1 ~~~cp~ya~~ellad~l~~~l~~f~~~ki~~~p~~w~~wl~~~c~~~~w~~~~spiiwrel~~rggkg~l~gg~~~f~e~ 80 (452)
T cd05295 1 RADCPYYAKAELLADYLQKNLPDFRVHKIVKHPDEWEDWLQDLCKKNGWSHKRSPIIWRELLDRGGKGLLLGGCNEFLEY 80 (452)
T ss_pred CCCCchhHHHHHHHHHHHhhCCCceEEEccCChHHHHHHHHHHHHhcCCccCCCCeeHHHHHhcCCCceEecChHHHHHH
Confidence 46899998887666553 444 9999998888654 444443 355 57799885 57899999999988
Q ss_pred Hhc
Q 002682 496 DES 498 (893)
Q Consensus 496 ~es 498 (893)
.+.
T Consensus 81 ~~~ 83 (452)
T cd05295 81 AES 83 (452)
T ss_pred HHH
Confidence 753
No 286
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=34.09 E-value=1.3e+02 Score=39.38 Aligned_cols=21 Identities=14% Similarity=0.159 Sum_probs=16.1
Q ss_pred EEEEEcCCChhHHHHHHHHHh
Q 002682 427 VILYTRLGCQESREVRLFLYW 447 (893)
Q Consensus 427 VvLYTksgCP~CkrAK~lL~e 447 (893)
|+-|..+||+.|+...-.|.+
T Consensus 424 ll~FWAsWC~pC~~e~P~L~~ 444 (1057)
T PLN02919 424 ILDFWTYCCINCMHVLPDLEF 444 (1057)
T ss_pred EEEEECCcChhHHhHhHHHHH
Confidence 666889999999986665543
No 287
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=33.93 E-value=32 Score=37.33 Aligned_cols=26 Identities=15% Similarity=0.027 Sum_probs=18.4
Q ss_pred CCCCcEEEEEcCCChhHHHHHHHHHh
Q 002682 422 VMKGRVILYTRLGCQESREVRLFLYW 447 (893)
Q Consensus 422 ~MkgkVvLYTksgCP~CkrAK~lL~e 447 (893)
.|+-+|.||+-.-||||---++-|+.
T Consensus 3 ~~~i~I~v~sD~vCPwC~ig~~rL~k 28 (225)
T COG2761 3 PMKIEIDVFSDVVCPWCYIGKRRLEK 28 (225)
T ss_pred CceEEEEEEeCCcCchhhcCHHHHHH
Confidence 34446999999999999554444444
No 288
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=33.43 E-value=25 Score=39.72 Aligned_cols=60 Identities=10% Similarity=0.098 Sum_probs=38.3
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCceEEEEcC-----CChhHHHHHHHHhCCCCcceEE-EcCeee
Q 002682 427 VILYTRLGCQESREVRLFLYWKRLRYVEINID-----VYPSRKMELEKFAGSSAVPKVF-FNEILM 486 (893)
Q Consensus 427 VvLYTksgCP~CkrAK~lL~e~GI~YeeIDId-----~d~e~r~EL~k~sG~~TVPqIF-InGk~I 486 (893)
.+=|..|||.+|++..-++++-|.....+.+. .+-.....+....|.+..|+|. +.|.+.
T Consensus 47 ~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiqGYPTIk~~kgd~a 112 (468)
T KOG4277|consen 47 FVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQGYPTIKFFKGDHA 112 (468)
T ss_pred EEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhccCCCceEEEecCCee
Confidence 45577899999999999998887766554432 1111223344445778888875 344443
No 289
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=32.12 E-value=28 Score=34.79 Aligned_cols=55 Identities=24% Similarity=0.148 Sum_probs=34.1
Q ss_pred HHHHHHhcCCceEEEEc-CCChhHHHHHH------HHhCCCCcceEEEcCe-eecccHhHHHh
Q 002682 441 VRLFLYWKRLRYVEINI-DVYPSRKMELE------KFAGSSAVPKVFFNEI-LMGGLSELKAL 495 (893)
Q Consensus 441 AK~lL~e~GI~YeeIDI-d~d~e~r~EL~------k~sG~~TVPqIFInGk-~IGG~DeL~el 495 (893)
...++.+.|++-..+.- -.+++.+..+. ...|...||.++|||+ .+-|.+.+-.+
T Consensus 126 l~~~~~~~Gld~~~~~~~~~~~~~~~~~~~~~~~a~~~gv~GvP~~vv~g~~~~~G~~~~~~l 188 (193)
T PF01323_consen 126 LAEIAEEAGLDPDEFDAALDSPEVKAALEEDTAEARQLGVFGVPTFVVNGKYRFFGADRLDEL 188 (193)
T ss_dssp HHHHHHHTT--HHHHHHHHTSHHHHHHHHHHHHHHHHTTCSSSSEEEETTTEEEESCSSHHHH
T ss_pred HHHHHHHcCCcHHHHHHHhcchHHHHHHHHHHHHHHHcCCcccCEEEECCEEEEECCCCHHHH
Confidence 56677778875444331 23445444443 2348899999999999 78887765443
No 290
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=30.57 E-value=1.6e+02 Score=27.96 Aligned_cols=33 Identities=15% Similarity=0.217 Sum_probs=21.3
Q ss_pred EEEEEcCCChh-HHHHHHHHH-------hcC---CceEEEEcCC
Q 002682 427 VILYTRLGCQE-SREVRLFLY-------WKR---LRYVEINIDV 459 (893)
Q Consensus 427 VvLYTksgCP~-CkrAK~lL~-------e~G---I~YeeIDId~ 459 (893)
|+.|..+||++ |.+....|. +.+ +.+.-|.++.
T Consensus 26 vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~ 69 (142)
T cd02968 26 LVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDP 69 (142)
T ss_pred EEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECC
Confidence 67778899998 975444443 333 6666666653
No 291
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=29.27 E-value=1.7e+02 Score=30.37 Aligned_cols=61 Identities=13% Similarity=0.174 Sum_probs=28.4
Q ss_pred EEEEEcCCChhHHHHHH----------HHHhcCCceEEEEcCCChhHHHHH----HHHhCCCCcceEEE---cCeeecc
Q 002682 427 VILYTRLGCQESREVRL----------FLYWKRLRYVEINIDVYPSRKMEL----EKFAGSSAVPKVFF---NEILMGG 488 (893)
Q Consensus 427 VvLYTksgCP~CkrAK~----------lL~e~GI~YeeIDId~d~e~r~EL----~k~sG~~TVPqIFI---nGk~IGG 488 (893)
++-.+.+||.+|+.+.+ +|.+.=|++ .+|.+..|++...+ ...+|....|...+ +|+.+-|
T Consensus 41 fl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~V-kvDree~Pdid~~y~~~~~~~~~~gGwPl~vfltPdg~p~~~ 118 (163)
T PF03190_consen 41 FLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPV-KVDREERPDIDKIYMNAVQAMSGSGGWPLTVFLTPDGKPFFG 118 (163)
T ss_dssp EEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEE-EEETTT-HHHHHHHHHHHHHHHS---SSEEEEE-TTS-EEEE
T ss_pred EEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEE-EeccccCccHHHHHHHHHHHhcCCCCCCceEEECCCCCeeee
Confidence 34456799999986553 444432222 24445556554333 23447777776555 5666543
No 292
>PF09413 DUF2007: Domain of unknown function (DUF2007); InterPro: IPR018551 This is a family of proteins with unknown function. ; PDB: 2HFV_A.
Probab=28.55 E-value=65 Score=27.54 Aligned_cols=53 Identities=17% Similarity=0.075 Sum_probs=30.5
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCCCCcceEEEcCe
Q 002682 427 VILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEI 484 (893)
Q Consensus 427 VvLYTksgCP~CkrAK~lL~e~GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFInGk 484 (893)
++||+...=-.+..++.+|++.||++...|-..... ... .|....+.|+|...
T Consensus 1 ~~l~~~~~~~ea~~i~~~L~~~gI~~~v~~~~~~~~----~g~-~g~~~~~~v~V~~~ 53 (67)
T PF09413_consen 1 KKLYTAGDPIEAELIKGLLEENGIPAFVKNEHMSGY----AGE-PGTGGQVEVYVPEE 53 (67)
T ss_dssp EEEEEE--HHHHHHHHHHHHHTT--EE--S----SS--------S--SSSEEEEEEGG
T ss_pred CEEEEcCCHHHHHHHHHHHHhCCCcEEEECCccchh----hcc-cCccCceEEEECHH
Confidence 468888888889999999999999999887653322 111 35555588998875
No 293
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=28.11 E-value=58 Score=37.22 Aligned_cols=53 Identities=9% Similarity=0.076 Sum_probs=35.4
Q ss_pred cEEEEEcCCChhHHHHHHHHHhc-----C-CceEEEEcCCChhHHHHHHHHhCCCCcceEEEc
Q 002682 426 RVILYTRLGCQESREVRLFLYWK-----R-LRYVEINIDVYPSRKMELEKFAGSSAVPKVFFN 482 (893)
Q Consensus 426 kVvLYTksgCP~CkrAK~lL~e~-----G-I~YeeIDId~d~e~r~EL~k~sG~~TVPqIFIn 482 (893)
-+++|..+||++|++....+.+. | +..-.+|.+.+ ..+...++...+|++.+=
T Consensus 50 ~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~~----~~~~~~y~i~gfPtl~~f 108 (383)
T KOG0191|consen 50 WLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDEH----KDLCEKYGIQGFPTLKVF 108 (383)
T ss_pred eEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCchhh----HHHHHhcCCccCcEEEEE
Confidence 48899999999998766555532 2 22333443333 346667888999998763
No 294
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=25.87 E-value=85 Score=38.43 Aligned_cols=52 Identities=15% Similarity=0.268 Sum_probs=37.9
Q ss_pred EEcCCChhHHHHHHHHH--------hcCCceEEEEcCCChhHHHHHHHHhCCCCcceEEE
Q 002682 430 YTRLGCQESREVRLFLY--------WKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF 481 (893)
Q Consensus 430 YTksgCP~CkrAK~lL~--------e~GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFI 481 (893)
|+.+||--|+.-+++.- ..++-+-..|+..+...-.++.+..|.-.+|.+++
T Consensus 481 fyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~~~p~~~~lLk~~~~~G~P~~~f 540 (569)
T COG4232 481 FYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTANDPAITALLKRLGVFGVPTYLF 540 (569)
T ss_pred eehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecCCCHHHHHHHHHcCCCCCCEEEE
Confidence 88899999997776653 45666778888755444444555578999999886
No 295
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=24.68 E-value=1.8e+02 Score=27.80 Aligned_cols=51 Identities=8% Similarity=-0.094 Sum_probs=27.5
Q ss_pred EEEE-EcCC-ChhHHHHHHHHHh-----cCCceEEEEcCCChhHHHHHHHHhCCCCcce
Q 002682 427 VILY-TRLG-CQESREVRLFLYW-----KRLRYVEINIDVYPSRKMELEKFAGSSAVPK 478 (893)
Q Consensus 427 VvLY-Tksg-CP~CkrAK~lL~e-----~GI~YeeIDId~d~e~r~EL~k~sG~~TVPq 478 (893)
++|| ...| ||.|.+-...|.+ .|+.+.-|+++.... ..+..+..+...+|.
T Consensus 29 vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~~~vi~Is~d~~~~-~~~~~~~~~~~~~~~ 86 (143)
T cd03014 29 KVISVFPSIDTPVCATQTKRFNKEAAKLDNTVVLTISADLPFA-QKRWCGAEGVDNVTT 86 (143)
T ss_pred EEEEEEcCCCCCcCHHHHHHHHHHHHhcCCCEEEEEECCCHHH-HHHHHHhcCCCCceE
Confidence 4444 3445 7999876555433 366666777654333 344444445445553
No 296
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=23.89 E-value=36 Score=40.81 Aligned_cols=80 Identities=10% Similarity=0.174 Sum_probs=44.7
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcCCceE--------EEEcCCChhHHHHHHHHhCCCCcceEEEcCeeecccHhHHHhHh
Q 002682 426 RVILYTRLGCQESREVRLFLYWKRLRYV--------EINIDVYPSRKMELEKFAGSSAVPKVFFNEILMGGLSELKALDE 497 (893)
Q Consensus 426 kVvLYTksgCP~CkrAK~lL~e~GI~Ye--------eIDId~d~e~r~EL~k~sG~~TVPqIFInGk~IGG~DeL~el~e 497 (893)
-.+-|..|||++|++..-++++++-.|+ .+|...+. +.. .+...+|+|+.=-. |+-.....+..
T Consensus 387 VLvEfyAPWCgHCk~laP~~eeLAe~~~~~~~vviAKmDaTaNd-----~~~-~~~~~fPTI~~~pa--g~k~~pv~y~g 458 (493)
T KOG0190|consen 387 VLVEFYAPWCGHCKALAPIYEELAEKYKDDENVVIAKMDATAND-----VPS-LKVDGFPTILFFPA--GHKSNPVIYNG 458 (493)
T ss_pred eEEEEcCcccchhhhhhhHHHHHHHHhcCCCCcEEEEecccccc-----Ccc-ccccccceEEEecC--CCCCCCcccCC
Confidence 4667888999999999988888766554 33333221 111 12334888887210 11111112222
Q ss_pred cCcchHHHHHHHhcCC
Q 002682 498 SGKLDEKIEYLITEAP 513 (893)
Q Consensus 498 sGeL~~lLk~~~~~ap 513 (893)
...|+.+.+.+.+++-
T Consensus 459 ~R~le~~~~fi~~~a~ 474 (493)
T KOG0190|consen 459 DRTLEDLKKFIKKSAT 474 (493)
T ss_pred CcchHHHHhhhccCCC
Confidence 2467777777765554
No 297
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=22.88 E-value=2.1e+02 Score=30.18 Aligned_cols=36 Identities=14% Similarity=-0.025 Sum_probs=27.1
Q ss_pred cEEEEEcCCChhHHHHHHHH---HhcCCce------EEEEcCCCh
Q 002682 426 RVILYTRLGCQESREVRLFL---YWKRLRY------VEINIDVYP 461 (893)
Q Consensus 426 kVvLYTksgCP~CkrAK~lL---~e~GI~Y------eeIDId~d~ 461 (893)
.|+-|..+||+.|+.-.-+| ...|+++ .-||++...
T Consensus 62 ~lvn~~Aswc~~c~~e~P~l~~l~~~~~~~~~y~~t~~IN~dd~~ 106 (184)
T TIGR01626 62 RVVHHIAGRTSAKEXNASLIDAIKAAKFPPVKYQTTTIINADDAI 106 (184)
T ss_pred EEEEEEecCCChhhccchHHHHHHHcCCCcccccceEEEECccch
Confidence 47778999999998655444 5578888 788887553
No 298
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=22.32 E-value=1.1e+02 Score=30.65 Aligned_cols=22 Identities=9% Similarity=0.013 Sum_probs=17.5
Q ss_pred cEEEEEcCCChhHHHHHHHHHh
Q 002682 426 RVILYTRLGCQESREVRLFLYW 447 (893)
Q Consensus 426 kVvLYTksgCP~CkrAK~lL~e 447 (893)
+|.+|+-+.||||-.+...|++
T Consensus 2 ~i~~~~D~~cp~c~~~~~~l~~ 23 (193)
T cd03025 2 ELYYFIDPLCGWCYGFEPLLEK 23 (193)
T ss_pred eEEEEECCCCchhhCchHHHHH
Confidence 4899999999999766665554
No 299
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=21.87 E-value=92 Score=32.52 Aligned_cols=20 Identities=10% Similarity=0.245 Sum_probs=16.5
Q ss_pred CCcEEEEEcCCChhHHHHHH
Q 002682 424 KGRVILYTRLGCQESREVRL 443 (893)
Q Consensus 424 kgkVvLYTksgCP~CkrAK~ 443 (893)
+..|+-|..-+||+|.+...
T Consensus 38 ~~~VvEffdy~CphC~~~~~ 57 (207)
T PRK10954 38 EPQVLEFFSFYCPHCYQFEE 57 (207)
T ss_pred CCeEEEEeCCCCccHHHhcc
Confidence 34699999999999998654
No 300
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=21.83 E-value=87 Score=32.71 Aligned_cols=53 Identities=13% Similarity=-0.006 Sum_probs=31.4
Q ss_pred HHHHHHHHhcCCceEEEEc-CCChhHH------HHHHHHhCCCCcceEEEcCeeecccHh
Q 002682 439 REVRLFLYWKRLRYVEINI-DVYPSRK------MELEKFAGSSAVPKVFFNEILMGGLSE 491 (893)
Q Consensus 439 krAK~lL~e~GI~YeeIDI-d~d~e~r------~EL~k~sG~~TVPqIFInGk~IGG~De 491 (893)
...+.++...|+.-+.++- -.++..+ ..+.+..|...+|.++|||+++-+...
T Consensus 124 ~~L~~~a~~~Gld~~~f~~~l~s~~~~~~v~~~~~~a~~~gI~gtPtfiInGky~v~~~~ 183 (207)
T PRK10954 124 ADIRDVFIKAGVKGEDYDAAWNSFVVKSLVAQQEKAAADLQLRGVPAMFVNGKYMVNNQG 183 (207)
T ss_pred HHHHHHHHHcCCCHHHHHHHHhChHHHHHHHHHHHHHHHcCCCCCCEEEECCEEEEcccc
Confidence 3466677778886332221 1122222 223344588999999999999765444
No 301
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=20.71 E-value=1.4e+02 Score=34.13 Aligned_cols=54 Identities=9% Similarity=-0.010 Sum_probs=31.1
Q ss_pred cEEEEEcCCChhHHHHHHHHHhc------CCceEEEEcCCChhHHHHHHHHhCCCCcceEEE
Q 002682 426 RVILYTRLGCQESREVRLFLYWK------RLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF 481 (893)
Q Consensus 426 kVvLYTksgCP~CkrAK~lL~e~------GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFI 481 (893)
.++.|..|||++|+.....+.+. +..+....++.. ....+....+.+.+|++.+
T Consensus 165 ~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~--~~~~~~~~~~v~~~Pt~~~ 224 (383)
T KOG0191|consen 165 WLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDAT--VHKSLASRLEVRGYPTLKL 224 (383)
T ss_pred eEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccc--hHHHHhhhhcccCCceEEE
Confidence 47888899999998775444332 333444444433 2223344445566666654
No 302
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=20.18 E-value=1.3e+02 Score=31.24 Aligned_cols=36 Identities=11% Similarity=-0.071 Sum_probs=24.5
Q ss_pred cEEEEEcCCChhHHHHHHHHH----hcCCceEEEEcCCCh
Q 002682 426 RVILYTRLGCQESREVRLFLY----WKRLRYVEINIDVYP 461 (893)
Q Consensus 426 kVvLYTksgCP~CkrAK~lL~----e~GI~YeeIDId~d~ 461 (893)
+|.+|+-.-||||--+++.|. ..+++++.+.+..++
T Consensus 2 ~Id~~~D~vcPwcylg~~~l~~~~~~~~v~i~~~P~~L~~ 41 (209)
T cd03021 2 KIELYYDVVSPYSYLAFEVLCRYQTAWNVDITYVPVFLGG 41 (209)
T ss_pred ceEEEEeCCChHHHHHHHHHHHHHHHhCCeEEEEeeehhH
Confidence 588999999999966655554 456665555554333
Done!