Query 002684
Match_columns 893
No_of_seqs 68 out of 70
Neff 3.9
Searched_HMMs 46136
Date Fri Mar 29 05:02:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002684.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002684hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0259 Tyrosine aminotransfer 66.9 7.7 0.00017 45.0 4.8 86 171-270 122-229 (447)
2 COG5509 Uncharacterized small 51.4 12 0.00025 33.3 2.2 42 478-519 22-63 (65)
3 PF06698 DUF1192: Protein of u 43.6 20 0.00044 31.5 2.5 48 472-519 12-59 (59)
4 PF08261 Carcinustatin: Carcin 39.9 14 0.0003 21.0 0.6 7 394-400 1-7 (8)
5 PRK11509 hydrogenase-1 operon 29.4 3.1E+02 0.0068 27.6 8.6 87 575-670 35-123 (132)
6 PF03952 Enolase_N: Enolase, N 26.3 1.2E+02 0.0027 30.2 5.2 56 406-464 41-97 (132)
7 PF08649 DASH_Dad1: DASH compl 25.6 2.5E+02 0.0055 24.9 6.3 51 803-863 6-56 (58)
8 PF03670 UPF0184: Uncharacteri 24.9 2.6E+02 0.0056 26.5 6.5 20 807-826 27-46 (83)
9 PF13848 Thioredoxin_6: Thiore 22.4 3.3E+02 0.0072 26.5 7.3 151 78-263 27-179 (184)
10 PF10475 DUF2450: Protein of u 22.0 3.5E+02 0.0075 29.9 8.1 41 845-885 120-160 (291)
11 PRK12399 tagatose 1,6-diphosph 21.6 81 0.0018 36.1 3.2 47 92-143 198-244 (324)
12 PF10260 SAYSvFN: Uncharacteri 21.3 83 0.0018 28.8 2.6 15 32-46 38-52 (71)
No 1
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=66.85 E-value=7.7 Score=44.98 Aligned_cols=86 Identities=19% Similarity=0.321 Sum_probs=64.3
Q ss_pred EeEEEEEEecChhHHHHHHHHHHHhcccCC---CCCC-------------------CCCCcceeeecccchHHHHHHHhh
Q 002684 171 YNFSVHAIQMGEKVTSVFEHAIKVLARKDD---VSTN-------------------RDDVDALWQVDVSMMDVLFTSLVD 228 (893)
Q Consensus 171 ynFs~hvi~~~~~V~~~fE~AI~~~~R~~d---~~~~-------------------~~~~~~~~qvd~~~m~~l~sslv~ 228 (893)
+-++..=|-+-.+-++.+|-||..++||-. .+.| +=-.+..|-+|-+.|++|.|
T Consensus 122 ~kl~a~DV~ltsGC~qAIe~~i~~LA~p~aNILlPrPGfp~Y~~~a~~~~lEVR~ydlLPe~~weIDL~~veal~D---- 197 (447)
T KOG0259|consen 122 NKLTADDVVLTSGCSQAIELAISSLANPGANILLPRPGFPLYDTRAIYSGLEVRYYDLLPEKDWEIDLDGVEALAD---- 197 (447)
T ss_pred CccCcCceEEeccchHHHHHHHHHhcCCCCceecCCCCCchHHHhhhhcCceeEeecccCcccceechHHHHHhhc----
Confidence 567777777778889999999999999877 1111 11146679999999999887
Q ss_pred hhccCCceEEEEECCCCCCCCcccccccCCHHHHHHhhhchH
Q 002684 229 YLQLENAYNIFILNPKHEKRARYGYRRGLSDSEITFLKENKD 270 (893)
Q Consensus 229 ~L~L~~sY~i~ilNPk~~~~a~YGYR~G~S~sE~~~L~~n~~ 270 (893)
||--.|+|+||++.-..+| |.+-++.+-+-+.
T Consensus 198 ----ENT~AivviNP~NPcGnVy------s~~HL~kiae~A~ 229 (447)
T KOG0259|consen 198 ----ENTVAIVVINPNNPCGNVY------SEDHLKKIAETAK 229 (447)
T ss_pred ----cCeeEEEEeCCCCCCcccc------cHHHHHHHHHHHH
Confidence 6999999999999444666 4555666655433
No 2
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=51.43 E-value=12 Score=33.29 Aligned_cols=42 Identities=33% Similarity=0.434 Sum_probs=37.0
Q ss_pred hhhhhhHHHHHHHHHHHHhhccccCCccchhhHHHHHHHHHh
Q 002684 478 VKLALCEELDERMQDLKNELQSFEGEEYDENHKRKAIEALRR 519 (893)
Q Consensus 478 ~~~~lC~el~e~~~~Lk~~L~~~~~~~~~~~~~~~a~~~l~r 519 (893)
..+....||.+|+--|..|++.++.+.-.+...+.|-++|+|
T Consensus 22 LsllsV~El~eRIalLq~EIeRlkAe~~kK~~srsAAeaLFr 63 (65)
T COG5509 22 LSLLSVAELEERIALLQAEIERLKAELAKKKASRSAAEALFR 63 (65)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHh
Confidence 456667899999999999999999998888889999999987
No 3
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=43.61 E-value=20 Score=31.50 Aligned_cols=48 Identities=33% Similarity=0.424 Sum_probs=40.0
Q ss_pred ccCccchhhhhhHHHHHHHHHHHHhhccccCCccchhhHHHHHHHHHh
Q 002684 472 HCKGRKVKLALCEELDERMQDLKNELQSFEGEEYDENHKRKAIEALRR 519 (893)
Q Consensus 472 hC~gr~~~~~lC~el~e~~~~Lk~~L~~~~~~~~~~~~~~~a~~~l~r 519 (893)
|-.|+......-+||++|+..|+.|+...+.+--.+...+.|-++||+
T Consensus 12 ~~ig~dLs~lSv~EL~~RIa~L~aEI~R~~~~~~~K~a~r~AAealFk 59 (59)
T PF06698_consen 12 HEIGEDLSLLSVEELEERIALLEAEIARLEAAIAKKSASRAAAEALFK 59 (59)
T ss_pred cccCCCchhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 345666677788999999999999999999988888888888888764
No 4
>PF08261 Carcinustatin: Carcinustatin peptide
Probab=39.85 E-value=14 Score=20.98 Aligned_cols=7 Identities=71% Similarity=1.621 Sum_probs=6.0
Q ss_pred CCCCccc
Q 002684 394 AGPFSWG 400 (893)
Q Consensus 394 AGPf~wG 400 (893)
|||+++|
T Consensus 1 agpy~fg 7 (8)
T PF08261_consen 1 AGPYSFG 7 (8)
T ss_pred CCccccc
Confidence 7999887
No 5
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=29.36 E-value=3.1e+02 Score=27.57 Aligned_cols=87 Identities=15% Similarity=0.224 Sum_probs=66.9
Q ss_pred EEEEEEEeccccccccccCcChhhHHHhhcccCCCCCccEEEEeeecccCChHHHHHHHHHHHhcccceee--eCceEEE
Q 002684 575 SFQLFFITQEKVRQVKQLPVNLKSLMDGLSSLLLPSQKPVFSQRMLTLSEDPALAMAFSVARRAAAVPMLL--VNGTYRK 652 (893)
Q Consensus 575 ~V~iiiI~d~~~~~~~~~~~D~e~Ik~el~~Lllp~Q~v~F~~~~~sL~e~~~LA~Afs~A~Rs~S~~~~~--~~g~y~~ 652 (893)
-..++++.++..|+++ ..|+--|=.++.+ -+++.+ +....+...+++.+|.-| +..+.|++. .+|++..
T Consensus 35 ~~~vl~~~gdp~r~~E--~~D~avvleELa~-e~~~~~--v~~akVDiD~~~~LA~~f----gV~siPTLl~FkdGk~v~ 105 (132)
T PRK11509 35 PDGVVLLSSDPKRTPE--VSDNPVMIGELLR-EFPDYT--WQVAIADLEQSEAIGDRF----GVFRFPATLVFTGGNYRG 105 (132)
T ss_pred CcEEEEeCCCCCcCCc--cccHHHHHHHHHH-HhcCCc--eEEEEEECCCCHHHHHHc----CCccCCEEEEEECCEEEE
Confidence 3578899999999998 5888888888765 335433 455678999999987776 344666554 5999999
Q ss_pred EEeeeecHHHHHHHHHhc
Q 002684 653 TVRSYVDSAILQYQLQRM 670 (893)
Q Consensus 653 ~~~~YLDSkeL~~~L~~~ 670 (893)
.+.-+.|-.+|..++++.
T Consensus 106 ~i~G~~~k~~l~~~I~~~ 123 (132)
T PRK11509 106 VLNGIHPWAELINLMRGL 123 (132)
T ss_pred EEeCcCCHHHHHHHHHHH
Confidence 998899999999998873
No 6
>PF03952 Enolase_N: Enolase, N-terminal domain; InterPro: IPR020811 Enolase (2-phospho-D-glycerate hydrolase) is an essential glycolytic enzyme that catalyses the interconversion of 2-phosphoglycerate and phosphoenolpyruvate [, ]. In vertebrates, there are 3 different, tissue-specific isoenzymes, designated alpha, beta and gamma. Alpha is present in most tissues, beta is localised in muscle tissue, and gamma is found only in nervous tissue. The functional enzyme exists as a dimer of any 2 isoforms. In immature organs and in adult liver, it is usually an alpha homodimer, in adult skeletal muscle, a beta homodimer, and in adult neurons, a gamma homodimer. In developing muscle, it is usually an alpha/beta heterodimer, and in the developing nervous system, an alpha/gamma heterodimer []. The tissue specific forms display minor kinetic differences. Tau-crystallin, one of the major lens proteins in some fish, reptiles and birds, has been shown [] to be evolutionary related to enolase. Neuron-specific enolase is released in a variety of neurological diseases, such as multiple sclerosis and after seizures or acute stroke. Several tumour cells have also been found positive for neuron-specific enolase. Beta-enolase deficiency is associated with glycogenosis type XIII defect.; GO: 0000287 magnesium ion binding, 0004634 phosphopyruvate hydratase activity, 0006096 glycolysis, 0000015 phosphopyruvate hydratase complex; PDB: 2FYM_D 3H8A_C 1E9I_D 3OTR_F 3QTP_A 1PDY_A 1PDZ_A 3TQP_B 2PTZ_A 2PTW_A ....
Probab=26.34 E-value=1.2e+02 Score=30.20 Aligned_cols=56 Identities=20% Similarity=0.311 Sum_probs=39.5
Q ss_pred CcccccccCCCcc-cccccccccChHHHHHHHHHHHHhhhhccCCCchhhHHHHHHHhhH
Q 002684 406 EGVRTELSLPNVG-KTIGAVEEISEDEAEDRLQDAIQEKFAVFGDKDHQAIDILLAEIDI 464 (893)
Q Consensus 406 ~Gvr~~~sLP~v~-~~fg~~~~ise~~a~e~lq~~~~~~~~~~~~k~~~a~dillaEidv 464 (893)
-|..-...|++.+ ++|++-. -.+|-+...+.|...+..+++.+|.++|-+|.|||=
T Consensus 41 tG~~Ea~elrD~~~~~~~gkg---V~~Av~~vn~~i~~~L~g~~~~dQ~~iD~~L~~lDg 97 (132)
T PF03952_consen 41 TGSHEAVELRDGDPERYGGKG---VSKAVENVNEIIAPALIGLDPTDQEEIDQILIELDG 97 (132)
T ss_dssp SSSSS-B---B-STTSGGGTB---HHHHHHHHHHTHHHHHTTSBTT-HHHHHHHHHHHHT
T ss_pred CCccccccccCCCcceecCcc---cchhhhhHHHHHHHHHHhcchhhHHHhCccceeccC
Confidence 3555555677666 6676655 367888888889898889999899999999999883
No 7
>PF08649 DASH_Dad1: DASH complex subunit Dad1; InterPro: IPR013958 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules []. Throughout the cell cycle Dad1 remains bound to kinetochores and its association is dependent on the Mis6 and Mal2 [].
Probab=25.56 E-value=2.5e+02 Score=24.87 Aligned_cols=51 Identities=20% Similarity=0.311 Sum_probs=38.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhccchHHHHHhhhhhHHHHHHHhhHHHHHHHHHHhhh
Q 002684 803 ARSYIISTLEESIQTVNSAIHLLLMERTTEKTFKLFQSQERELVNKYNYVVSLWRRISTVT 863 (893)
Q Consensus 803 ~RN~Ilt~Ld~SI~~vnsAI~~L~~~~ts~k~F~~~ks~e~e~~~k~nsvv~lWr~va~~~ 863 (893)
.|..++..|..++..+-..++.|...=++. ...+++|-+|.+||.+--..+
T Consensus 6 qR~~Li~eI~~~~e~vl~nlN~LNRsLE~~----------i~VGkEF~~V~~LW~~F~~~m 56 (58)
T PF08649_consen 6 QRDRLIQEISESMESVLNNLNALNRSLESV----------ISVGKEFESVSSLWSQFYNGM 56 (58)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHH----------HHHhhhHHHHHHHHHHHHHHh
Confidence 478888999999998888888887322221 347889999999999765543
No 8
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=24.86 E-value=2.6e+02 Score=26.48 Aligned_cols=20 Identities=15% Similarity=0.257 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 002684 807 IISTLEESIQTVNSAIHLLL 826 (893)
Q Consensus 807 Ilt~Ld~SI~~vnsAI~~L~ 826 (893)
=|..|+.+++.+|++++.|.
T Consensus 27 E~~~ins~LD~Lns~LD~LE 46 (83)
T PF03670_consen 27 EYAAINSMLDQLNSCLDHLE 46 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 48999999999999999998
No 9
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=22.37 E-value=3.3e+02 Score=26.46 Aligned_cols=151 Identities=17% Similarity=0.284 Sum_probs=78.4
Q ss_pred hccccchhhhcccceeeeEeeccceeEEEEecccCCCcccccChhHHHHHHhhhhccccccccCCCCccccccccccccc
Q 002684 78 YTRAGNIANYLKLMEVDSMYLPVPVNFIFIGFEGNGNQDFQLHPDELERWFLKIDHIFEHTRVPPIGEVLAPFYRTSVDK 157 (893)
Q Consensus 78 ~~~s~nia~yl~l~~v~sl~lpvPvnfifiGF~G~Gn~~~~l~~~el~~WF~~idH~~~htrip~~ge~lt~f~~~~~~~ 157 (893)
.+.++++++-+++.+ .+|.+-=|-.=-.+=+. |. ++..++|.+|.+. .+.|.+++ +|+ ....+
T Consensus 27 ~~~~~~~~~~~~~~~-p~i~~~k~~~~~~~~y~--~~---~~~~~~l~~fI~~-------~~~P~v~~-~t~---~n~~~ 89 (184)
T PF13848_consen 27 VTFNEELAKKYGIKE-PTIVVYKKFDEKPVVYD--GD---KFTPEELKKFIKK-------NSFPLVPE-LTP---ENFEK 89 (184)
T ss_dssp EEE-HHHHHHCTCSS-SEEEEEECTTTSEEEES--SS---TTSHHHHHHHHHH-------HSSTSCEE-EST---THHHH
T ss_pred EEcHHHHHHHhCCCC-CcEEEeccCCCCceecc--cc---cCCHHHHHHHHHH-------hccccccc-cch---hhHHH
Confidence 455677887777766 55554332000011111 22 6799999999874 35555444 555 34444
Q ss_pred ccccCCCceeeeEEeEEEEEEecChhHHHHHHHHHHHhcccCCCCCCCCCCcceeeecccchHHHHHHHhhhhccC--Cc
Q 002684 158 VQRHHLPTISHINYNFSVHAIQMGEKVTSVFEHAIKVLARKDDVSTNRDDVDALWQVDVSMMDVLFTSLVDYLQLE--NA 235 (893)
Q Consensus 158 ~~~~~~P~~Shi~ynFs~hvi~~~~~V~~~fE~AI~~~~R~~d~~~~~~~~~~~~qvd~~~m~~l~sslv~~L~L~--~s 235 (893)
....+.|++-.+- ..-+..-..-+...+.-++++-. +.-..-.+|.+.. ..++.+||+. +-
T Consensus 90 ~~~~~~~~~~~~~-------~~~~~~~~~~~~~~l~~~a~~~~------~~~~f~~~d~~~~----~~~~~~~~i~~~~~ 152 (184)
T PF13848_consen 90 LFSSPKPPVLILF-------DNKDNESTEAFKKELQDIAKKFK------GKINFVYVDADDF----PRLLKYFGIDEDDL 152 (184)
T ss_dssp HHSTSSEEEEEEE-------ETTTHHHHHHHHHHHHHHHHCTT------TTSEEEEEETTTT----HHHHHHTTTTTSSS
T ss_pred HhcCCCceEEEEE-------EcCCchhHHHHHHHHHHHHHhcC------CeEEEEEeehHHh----HHHHHHcCCCCccC
Confidence 4444444221111 11133444555555555554331 1233457788844 4477788998 55
Q ss_pred eEEEEECCCCCCCCcccccccCCHHHHH
Q 002684 236 YNIFILNPKHEKRARYGYRRGLSDSEIT 263 (893)
Q Consensus 236 Y~i~ilNPk~~~~a~YGYR~G~S~sE~~ 263 (893)
=.|+|+|++... -.|-+.--++.+.|.
T Consensus 153 P~~vi~~~~~~~-~~~~~~~~~~~~~i~ 179 (184)
T PF13848_consen 153 PALVIFDSNKGK-YYYLPEGEITPESIE 179 (184)
T ss_dssp SEEEEEETTTSE-EEE--SSCGCHHHHH
T ss_pred CEEEEEECCCCc-EEcCCCCCCCHHHHH
Confidence 688889988732 233344445554443
No 10
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=21.98 E-value=3.5e+02 Score=29.86 Aligned_cols=41 Identities=10% Similarity=0.110 Sum_probs=31.4
Q ss_pred HHHHhhHHHHHHHHHHhhhcCCcHHHHHHHHHHHhhhhhhH
Q 002684 845 LVNKYNYVVSLWRRISTVTGDLRYADAMRQLYTLEDASKGY 885 (893)
Q Consensus 845 ~~~k~nsvv~lWr~va~~~~~l~y~~Al~~l~~lE~~s~~f 885 (893)
.++.-+.+...-..+-.+++..+|..|+.++.+..+....+
T Consensus 120 ~L~~i~~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~l~~l 160 (291)
T PF10475_consen 120 KLEQIKTVQQTQSRLQELLEEGDYPGALDLIEECQQLLEEL 160 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhc
Confidence 34444444556668888999999999999999999887654
No 11
>PRK12399 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=21.60 E-value=81 Score=36.06 Aligned_cols=47 Identities=30% Similarity=0.487 Sum_probs=38.0
Q ss_pred eeeeEeeccceeEEEEecccCCCcccccChhHHHHHHhhhhccccccccCCC
Q 002684 92 EVDSMYLPVPVNFIFIGFEGNGNQDFQLHPDELERWFLKIDHIFEHTRVPPI 143 (893)
Q Consensus 92 ~v~sl~lpvPvnfifiGF~G~Gn~~~~l~~~el~~WF~~idH~~~htrip~~ 143 (893)
.||=+-++||||.-|| +|-|..+.-.+.+|-.+||....-+ +.+|=|
T Consensus 198 gvDVlKvEvPvn~~~v--eG~~~~e~~yt~~eA~~~f~~~~~~---~~~P~i 244 (324)
T PRK12399 198 GVDVLKVEVPVNMKYV--EGFAEGEVVYTKEEAAQHFKEQDAA---THLPYI 244 (324)
T ss_pred CCcEEEEecccccccc--cccCcccccccHHHHHHHHHHHhhc---cCCCEE
Confidence 7899999999999999 4445558889999999999887765 566654
No 12
>PF10260 SAYSvFN: Uncharacterized conserved domain (SAYSvFN); InterPro: IPR019387 This domain of approximately 75 residues contains a highly conserved SATSv/iFN motif. The function is unknown but the domain is conserved from plants to humans.
Probab=21.26 E-value=83 Score=28.75 Aligned_cols=15 Identities=47% Similarity=0.749 Sum_probs=13.3
Q ss_pred CcccCCCceeeeccc
Q 002684 32 SRKSGRSSVFSLFNL 46 (893)
Q Consensus 32 ~~~~~~~~~~~~~~~ 46 (893)
.|+.|.-|++|.||=
T Consensus 38 ~r~~ge~SAYSVFN~ 52 (71)
T PF10260_consen 38 PRKPGELSAYSVFNK 52 (71)
T ss_pred CCCCCCccchhhhCC
Confidence 688899999999994
Done!