Query 002684
Match_columns 893
No_of_seqs 68 out of 70
Neff 3.9
Searched_HMMs 29240
Date Tue Mar 26 22:08:26 2013
Command hhsearch -i /local_scratch/syshi/lefta3m2/002684.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H2_77-80//hhsearch_pdb/002684hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2le2_A P56; UDG inhibition, DN 1.0 1 1 18.4 2.0 37 234-270 8-44 (56)
2 3foa_A Tail sheath protein GP1 1.0 1 1 15.8 0.2 35 211-245 142-176 (510)
3 3eld_A Methyltransferase; flav 1.0 1 1 15.2 0.7 47 474-520 8-55 (300)
4 3gcz_A Polyprotein; flavivirus 1.0 1 1 14.6 3.2 44 479-522 23-67 (282)
5 3hdf_A Lysozyme; antimicrobial 1.0 1 1 14.4 1.8 50 425-476 39-88 (140)
6 3evf_A RNA-directed RNA polyme 1.0 1 1 14.3 2.1 178 479-671 6-203 (277)
7 1j2z_A Acyl-[acyl-carrier-prot 1.0 1 1 14.1 -0.3 38 234-271 178-216 (270)
8 3hde_A Lysozyme; antimicrobial 1.0 1 1 13.8 0.8 50 425-476 64-113 (165)
9 2anv_A Lysozyme; direct method 1.0 1 1 13.8 -0.6 50 425-476 49-98 (146)
10 2g7j_A Putative cytoplasmic pr 1.0 1 1 13.7 -0.4 10 247-256 23-32 (124)
No 1
>2le2_A P56; UDG inhibition, DNA mimicry, hydrolas inhibitor; NMR {Bacillus phage PHI29}
Probab=1.00 E-value=1 Score=18.36 Aligned_cols=37 Identities=27% Similarity=0.525 Sum_probs=32.2
Q ss_pred CCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHCHH
Q ss_conf 8368999789998987643245689788999552017
Q 002684 234 NAYNIFILNPKHEKRARYGYRRGLSDSEITFLKENKD 270 (893)
Q Consensus 234 ~sY~i~ilNPk~~~~a~YGYR~G~S~sE~~~L~~n~~ 270 (893)
+||++-.|--.-++.--|-|..|+|-|..+.||+|.-
T Consensus 8 dsy~~t~ll~dddg~q~~e~h~glslsdfev~ygn~~ 44 (56)
T 2le2_A 8 DSYDVTMLLQDDDGKQYYEYHKGLSLSDFEVLYGNTA 44 (56)
T ss_dssp SSEEEEEEEECTTSCEEEEEEEEECHHHHHHHHHHSC
T ss_pred CCEEEEEEEECCCCCEEEEEECCCCCCCEEEEECCCH
T ss_conf 1003789998488854221204864210788837995
No 2
>3foa_A Tail sheath protein GP18; alpha-beta, viral structural protein, bacteriophage T4, viral protein; 3.50A {Enterobacteria phage T4} PDB: 3foh_A 3foi_A
Probab=1.00 E-value=1 Score=15.79 Aligned_cols=35 Identities=9% Similarity=0.070 Sum_probs=21.4
Q ss_pred EEEECCCCHHHHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf 04316200679999875331668836899978999
Q 002684 211 LWQVDVSMMDVLFTSLVDYLQLENAYNIFILNPKH 245 (893)
Q Consensus 211 ~~qvd~~~m~~l~sslv~~L~L~~sY~i~ilNPk~ 245 (893)
..++-...+-.---++-+|-.|++++++=|.-|--
T Consensus 142 ~~~ip~~~ii~~ak~~~~yp~l~~~w~~e~~~~~~ 176 (510)
T 3foa_A 142 KINIPTAKIIAKAKEVGEYPTLGSNWTAEISSSSS 176 (510)
T ss_dssp EEECCCHHHHHHHHHTTCSSCCCSSEEEEECTTCS
T ss_pred EEECCHHHHHHHHHHCCCCCCCCCCCEEEEEECCC
T ss_conf 99825189888776317787778761589960478
No 3
>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*
Probab=1.00 E-value=1 Score=15.24 Aligned_cols=47 Identities=19% Similarity=0.304 Sum_probs=26.8
Q ss_pred CCCCHHHHHHHHHHHHHHHH-HHHHCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 75201334458999999999-986201237752021279999999731
Q 002684 474 KGRKVKLALCEELDERMQDL-KNELQSFEGEEYDENHKRKAIEALRRM 520 (893)
Q Consensus 474 ~gr~~~~~lC~el~e~~~~L-k~~L~~~~~~~~~~~~~~~a~~~l~r~ 520 (893)
.|.+.-.-|-+-|+++...| |.++..|+..++-|-.++.|-++|++-
T Consensus 8 ~~~~~~~tlg~~wk~~Ln~l~k~~f~~y~~~~i~e~dr~~ar~~l~~~ 55 (300)
T 3eld_A 8 HGKAAGVTLGEVWKRQLNMLGKQEFERYKVSDITEVDRTAARRYLKEG 55 (300)
T ss_dssp ------CCHHHHHHHHHTTSCHHHHHHHHHTTCEEECCHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCC
T ss_conf 442122328999999998652899975304240011479999999717
No 4
>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}
Probab=1.00 E-value=1 Score=14.58 Aligned_cols=44 Identities=14% Similarity=0.207 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHH-HHHHCCCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 334458999999999-98620123775202127999999973101
Q 002684 479 KLALCEELDERMQDL-KNELQSFEGEEYDENHKRKAIEALRRMEN 522 (893)
Q Consensus 479 ~~~lC~el~e~~~~L-k~~L~~~~~~~~~~~~~~~a~~~l~r~e~ 522 (893)
-.-|-+-|+++...| |.++..|+..++-|-.++.|-++|++-+.
T Consensus 23 ~~tlg~~wk~~ln~l~k~~f~~y~~~~i~e~~r~~ar~~l~~~~~ 67 (282)
T 3gcz_A 23 GMTPGEAWKKQLNKLGKTQFEQYKRSCILEVDRTHARDSLENGIQ 67 (282)
T ss_dssp -CCHHHHHHHHHHHCCHHHHHHHHTTTCEEECCHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHCEEECCHHHHHHHHHCCCC
T ss_conf 773899999999765289997530424002047999999854875
No 5
>3hdf_A Lysozyme; antimicrobial, bacteriolytic enzyme, glycosid hydrolase, late protein; 1.70A {Enterobacteria phage P21}
Probab=1.00 E-value=1 Score=14.40 Aligned_cols=50 Identities=12% Similarity=0.109 Sum_probs=37.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 3458579989999999865220588860469999887668789986306752
Q 002684 425 EEISEDEAEDRLQDAIQEKFAVFGDKDHQAIDILLAEIDIYELFAFKHCKGR 476 (893)
Q Consensus 425 ~~ise~~a~e~lq~~~~~~~~~~~~k~~~a~dillaEidvye~fa~khC~gr 476 (893)
..||++|+++.|+.-+..-...+.. ...+.+.+.+.|.+-.|+|+-+.+.
T Consensus 39 ~~iT~~ea~~ll~~dl~~~~~~v~~--~v~~~l~q~q~dALvSfafNvG~g~ 88 (140)
T 3hdf_A 39 KTYTKAECKALLNKDLATVARQINP--YIKVDIPETMRGALYSFVYNVGAGN 88 (140)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHGG--GCCSCCCHHHHHHHHHHHHHHCTTS
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHH--HCCCCCCHHHHHHHHHHHHHCCCCC
T ss_conf 9779999999999999999999997--5445599999999999998447786
No 6
>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*
Probab=1.00 E-value=1 Score=14.33 Aligned_cols=178 Identities=14% Similarity=0.012 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHHHH-HHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 334458999999999-9862012377520212799999997310123467750000101223776899898999963002
Q 002684 479 KLALCEELDERMQDL-KNELQSFEGEEYDENHKRKAIEALRRMENWNLFSDTHEEFQNYTVARDTFLAHLGATLWGSMRH 557 (893)
Q Consensus 479 ~~~lC~el~e~~~~L-k~~L~~~~~~~~~~~~~~~a~~~l~r~e~w~lfg~~~e~~~n~t~a~d~Fla~LaSlv~sA~rh 557 (893)
-.-|-+-|+++...| |.++..|+..++-|-.++.|-++|++-+. .-++| .+|.+| .|.-+.-. .
T Consensus 6 ~~tlg~~wk~~ln~l~k~~f~~y~~~~i~e~~r~~ar~~l~~~~~---------~~~~Y-rSRaA~--KL~ei~ek---~ 70 (277)
T 3evf_A 6 GKTLGEVWKRELNLLDKRQFELYKRTDIVEVDRDTARRHLAEGKV---------DTGVA-VSRGTA--KLRWFHER---G 70 (277)
T ss_dssp -CCHHHHHHHHHHHSCHHHHHHHHTSSEEEECCHHHHHHHHTTCC---------SSCBC-SSTHHH--HHHHHHHT---T
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCC---------CCCCC-CCCHHH--HHHHHHHH---C
T ss_conf 462899999999866289998640424002047999999962876---------68984-020999--99999985---7
Q ss_pred CCCCCCCC---CCC-----CC-CCE--E-EEEEEEEECC-CCCCCCCCCCCH--HHHHHHHCCCCCCCCCCEEEEEEECC
Q ss_conf 00466557---656-----76-533--7-9999999515-345665667686--56998630037999821899812104
Q 002684 558 VISPSIAD---GAF-----HY-YET--I-SFQLFFITQE-KVRQVKQLPVNL--KSLMDGLSSLLLPSQKPVFSQRMLTL 622 (893)
Q Consensus 558 LIAPsl~~---~~~-----~y-~e~--V-~V~iiiI~d~-~~~~~~~~~iD~--e~Ik~el~~Lllp~Q~v~F~~~~isL 622 (893)
++-|.-+. ++- .| .++ + .+.=+.|... +...+....+++ -.++..++-..+++..+-++..-.+.
T Consensus 71 ~l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~~~~~g~~ii~~~~~~dv~~l~~~~~DlVlsD~ap 150 (277)
T 3evf_A 71 YVKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMNVQSLGWNIITFKDKTDIHRLEPVKCDTLLCDIGE 150 (277)
T ss_dssp SSCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCCCCBTTGGGEEEECSCCTTTSCCCCCSEEEECCCC
T ss_pred CCCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCEEEEECCCEEHHCCCCCCCEEEECCCC
T ss_conf 99879979992688977999999863887410289845576250146767887699835402010478875689842766
Q ss_pred C-CCHHHHHHHHHHHHHCCCCEEEEC-CEEEEEEEE--EECHHHHHHHHHHCC
Q ss_conf 5-796888899999770143113317-629998755--631899999998425
Q 002684 623 S-EDPALAMAFSVARRAAAVPMLLVN-GTYRKTVRS--YVDSAILQYQLQRMN 671 (893)
Q Consensus 623 ~-e~~~LA~Afs~A~Rs~S~~~~~~~-g~y~~~~~~--YLDSkeL~~~L~~~~ 671 (893)
+ -++..-.+-+..+=-.+...+..+ |+|-..+=+ ==|-.+|..+|++.-
T Consensus 151 nsG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf~pyg~~~~~l~~~lk~~F 203 (277)
T 3evf_A 151 SSSSSVTEGERTVRVLDTVEKWLACGVDNFCVKVLAPYMPDVLEKLELLQRRF 203 (277)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESCTTSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHC
T ss_conf 76866889999999999999983789974999964788956999999999856
No 7
>1j2z_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; UDP-N-acetylglucosamine acyltransferase, LPXA, LEFT-handed B structure; HET: SOG TLA; 2.10A {Helicobacter pylori} SCOP: b.81.1.1
Probab=1.00 E-value=1 Score=14.13 Aligned_cols=38 Identities=18% Similarity=0.112 Sum_probs=29.3
Q ss_pred CCEEEEEECCCC-CCCCCCCCCCCCCHHHHHHHHHCHHH
Q ss_conf 836899978999-89876432456897889995520179
Q 002684 234 NAYNIFILNPKH-EKRARYGYRRGLSDSEITFLKENKDL 271 (893)
Q Consensus 234 ~sY~i~ilNPk~-~~~a~YGYR~G~S~sE~~~L~~n~~l 271 (893)
..|.++.=||-+ .+....|.|+||+++++..|++....
T Consensus 178 p~~~~~~G~pa~~~~~n~~g~r~~~~~~~~~~~~~~~~~ 216 (270)
T 1j2z_A 178 PPYCTVEGNRAFIRGLNRHRMRQLLESKDIDFIYALYKR 216 (270)
T ss_dssp CTTEEEETTBTEEEEECHHHHHHHSCHHHHHHHHHHHHH
T ss_pred CCCEEEECCCCEEECCCCHHHHCCCCHHHHHHHHHHHHH
T ss_conf 998399667867825663221248999999999999999
No 8
>3hde_A Lysozyme; antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase, late protein; 1.95A {Enterobacteria phage P21}
Probab=1.00 E-value=1 Score=13.78 Aligned_cols=50 Identities=12% Similarity=0.109 Sum_probs=36.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 3458579989999999865220588860469999887668789986306752
Q 002684 425 EEISEDEAEDRLQDAIQEKFAVFGDKDHQAIDILLAEIDIYELFAFKHCKGR 476 (893)
Q Consensus 425 ~~ise~~a~e~lq~~~~~~~~~~~~k~~~a~dillaEidvye~fa~khC~gr 476 (893)
..||++|+++.|+.-+..-...+.. ...+.+.+.+.|.+-.|+|+-+.+.
T Consensus 64 ~~iT~~ea~~lL~~Dl~~~e~~v~~--~v~v~L~q~q~dALvSfafNvG~g~ 113 (165)
T 3hde_A 64 KTYTKAECKALLNKDLATVARQINP--YIKVDIPETMRGALYSFVYNVGAGN 113 (165)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHGG--GCCSCCCHHHHHHHHHHHHHHCHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHH--HCCCCCCHHHHHHHHHHHHHCCCCC
T ss_conf 9789999999999999999999997--4688898999999999998557786
No 9
>2anv_A Lysozyme; direct methods, lanthinide binding sites, hydrolase; 1.04A {Enterobacteria phage P22} PDB: 2anx_A
Probab=1.00 E-value=1 Score=13.77 Aligned_cols=50 Identities=12% Similarity=0.122 Sum_probs=34.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 3458579989999999865220588860469999887668789986306752
Q 002684 425 EEISEDEAEDRLQDAIQEKFAVFGDKDHQAIDILLAEIDIYELFAFKHCKGR 476 (893)
Q Consensus 425 ~~ise~~a~e~lq~~~~~~~~~~~~k~~~a~dillaEidvye~fa~khC~gr 476 (893)
..||++|+++.|+.-+..-...+.. ...+.+-+.+.|.+-.|+++-+.|.
T Consensus 49 ~~iT~~ea~~ll~~dl~~~~~~v~~--~~~v~l~q~q~dALvsf~yNvG~g~ 98 (146)
T 2anv_A 49 MTITAEKSSELLKEDLQWVEDAISS--LVRVPLNQNQYDAMCSLIFNIGKSA 98 (146)
T ss_dssp CBCCHHHHHHHHHHHTHHHHHHHHH--HCCSCCCHHHHHHHHHHHHHHCHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHH--HCCCCCCHHHHHHHHHHHHCCCCCC
T ss_conf 9649999999999999999999999--5799999999999984442357886
No 10
>2g7j_A Putative cytoplasmic protein; STR72, autostructure, structural genomics, PSI, protein STRU initiative; NMR {Salmonella typhimurium} SCOP: d.198.5.1
Probab=1.00 E-value=1 Score=13.66 Aligned_cols=10 Identities=60% Similarity=1.265 Sum_probs=6.1
Q ss_pred CCCCCCCCCC
Q ss_conf 9876432456
Q 002684 247 KRARYGYRRG 256 (893)
Q Consensus 247 ~~a~YGYR~G 256 (893)
++..||||+|
T Consensus 23 t~kaYGyrrG 32 (124)
T 2g7j_A 23 TNKTYGYRRG 32 (124)
T ss_dssp ETTEEEEEET
T ss_pred ECCCCCEECC
T ss_conf 1222111116
Done!