Query 002684
Match_columns 893
No_of_seqs 68 out of 70
Neff 3.9
Searched_HMMs 13730
Date Tue Mar 26 22:13:16 2013
Command hhsearch -i /local_scratch/syshi/lefta3m2/002684.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H2_77-80//hhsearch_scop/002684hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2hoxa1 c.67.1.1 (A:1-425) All 4.2 87 0.0063 6.8 4.5 62 178-247 126-209 (425)
2 d1f0la1 b.2.1.1 (A:381-535) Di 3.5 1E+02 0.0073 6.4 -0.2 88 99-217 20-112 (155)
3 d1s98a_ b.124.1.1 (A:) Fe-S sc 3.1 1.3E+02 0.0092 5.7 1.4 38 208-245 57-94 (97)
4 d1y71a1 b.34.16.1 (A:4-127) Ki 2.7 1.5E+02 0.011 5.1 0.7 18 315-332 105-122 (124)
5 d1mwva2 a.93.1.3 (A:441-748) C 2.6 1.5E+02 0.011 5.1 1.2 22 437-458 174-195 (308)
6 d1ub2a2 a.93.1.3 (A:427-720) C 2.4 1.7E+02 0.012 4.8 0.8 22 437-458 162-183 (294)
7 d2ccaa2 a.93.1.3 (A:436-720) C 2.4 1.7E+02 0.013 4.7 1.2 19 438-456 173-191 (285)
8 d1ux8a_ a.1.1.1 (A:) Protozoan 2.4 1.7E+02 0.013 4.7 0.9 29 114-142 71-99 (119)
9 d2outa2 d.344.1.1 (A:4-70) Mu- 2.3 1.8E+02 0.013 4.6 2.5 35 232-271 1-48 (67)
10 d1b43a2 c.120.1.2 (A:1-219) Fl 2.3 1.8E+02 0.013 4.6 1.2 8 688-695 72-79 (219)
No 1
>d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]}
Probab=4.21 E-value=87 Score=6.85 Aligned_cols=62 Identities=15% Similarity=0.203 Sum_probs=42.4
Q ss_pred EECCHHHHHHHHHHHHHHCCCCCCC-----------CC-----------CCCCCCEEEECCCCHHHHHHHHHHHHCCCCC
Q ss_conf 8629037789999999840567888-----------88-----------7897650431620067999987533166883
Q 002684 178 IQMGEKVTSVFEHAIKVLARKDDVS-----------TN-----------RDDVDALWQVDVSMMDVLFTSLVDYLQLENA 235 (893)
Q Consensus 178 i~~~~~V~~~fE~AI~~~~R~~d~~-----------~~-----------~~~~~~~~qvd~~~m~~l~sslv~~L~L~~s 235 (893)
|-+|.+.+.++.-||..++.+.+.. .| -+..+..|+.|++.+.... -++.
T Consensus 126 IvvG~Gsteli~~~~~AL~~~~~~~~~~pg~~Vv~~~P~y~~Y~~~~~~~~~~~~~~~~D~~~~~~~~--------~~~~ 197 (425)
T d2hoxa1 126 IVFGVGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFREQTKYFDKKGYVWAGNAANYVNVS--------NPEQ 197 (425)
T ss_dssp EEEESHHHHHHHHHHHHHSCCTTTCTTSCCEEEEECSSCCHHHHHHHHHSCBTTEEEEEEGGGGTTCS--------CGGG
T ss_pred EEECCCHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHC--------CCCC
T ss_conf 99888899999999998454334555799998999068451099999972998775179999998517--------8995
Q ss_pred EEEEEECCCCCC
Q ss_conf 689997899989
Q 002684 236 YNIFILNPKHEK 247 (893)
Q Consensus 236 Y~i~ilNPk~~~ 247 (893)
+-++|-|||+.+
T Consensus 198 ~ii~l~sPnNPt 209 (425)
T d2hoxa1 198 YIEMVTSPNNPE 209 (425)
T ss_dssp EEEEEESSCTTT
T ss_pred EEEEEECCCCCC
T ss_conf 399997998997
No 2
>d1f0la1 b.2.1.1 (A:381-535) Diphtheria toxin, C-terminal domain {Corynebacterium diphtheriae [TaxId: 1717]}
Probab=3.52 E-value=1e+02 Score=6.40 Aligned_cols=88 Identities=25% Similarity=0.337 Sum_probs=54.4
Q ss_pred CCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEE-----E
Q ss_conf 00102898820258986643695689999752100036543489876556432246422124589840246776-----7
Q 002684 99 PVPVNFIFIGFEGNGNQDFQLHPDELERWFLKIDHIFEHTRVPPIGEVLAPFYRTSVDKVQRHHLPTISHINYN-----F 173 (893)
Q Consensus 99 pvPvnfifiGF~G~Gn~~~~l~~~el~~WF~~idH~~~htrip~~ge~lt~f~~~~~~~~~~~~~P~~Shi~yn-----F 173 (893)
.|-...|--||.|+..|+.|+.. |+|-+|- .-+|-|--++..|--+- .+||.-| .
T Consensus 20 tvedsiirtgfqgesghdikita--------------entplpi-agvllptipgkldvnks-----kthisvngrkirm 79 (155)
T d1f0la1 20 TVEDSIIRTGFQGESGHDIKITA--------------ENTPLPI-AGVLLPTIPGKLDVNKS-----KTHISVNGRKIRM 79 (155)
T ss_dssp SGGGGEEETTCCSEEEEEEEEEE--------------SSSCEEE-CEEEEECBTTTEEECTT-----TCEEEETTEEECE
T ss_pred CHHHHHHHHCCCCCCCCCEEEEE--------------CCCCCCE-EEEEECCCCCCEECCCC-----CEEEEECCEEEEE
T ss_conf 03344431034677787327862--------------4787634-01670468872212565-----2068774828889
Q ss_pred EEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCC
Q ss_conf 99998629037789999999840567888887897650431620
Q 002684 174 SVHAIQMGEKVTSVFEHAIKVLARKDDVSTNRDDVDALWQVDVS 217 (893)
Q Consensus 174 s~hvi~~~~~V~~~fE~AI~~~~R~~d~~~~~~~~~~~~qvd~~ 217 (893)
.|.+|+-.. .|-||..|.--++...+-.+|--|
T Consensus 80 rcraid~~~-----------~fcrpk~pvyvgngvhanlhvafh 112 (155)
T d1f0la1 80 RCRAIDGDV-----------TFCRPKSPVYVGNGVHANLHVAFH 112 (155)
T ss_dssp EEEEETTTE-----------EEEEESSCEEEBTTBCEEEEEEEE
T ss_pred EEEEECCCE-----------EEECCCCCEEECCCEEEEEEEEEE
T ss_conf 987625865-----------674489987875720034789886
No 3
>d1s98a_ b.124.1.1 (A:) Fe-S scaffold protein IscA (YfhF) {Escherichia coli [TaxId: 562]}
Probab=3.11 E-value=1.3e+02 Score=5.69 Aligned_cols=38 Identities=18% Similarity=0.114 Sum_probs=31.0
Q ss_pred CCCEEEECCCCHHHHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf 76504316200679999875331668836899978999
Q 002684 208 VDALWQVDVSMMDVLFTSLVDYLQLENAYNIFILNPKH 245 (893)
Q Consensus 208 ~~~~~qvd~~~m~~l~sslv~~L~L~~sY~i~ilNPk~ 245 (893)
.+....||+..+..|..+-+||.+-...-...|-|||-
T Consensus 57 ~g~~i~id~~s~~~L~G~~IDy~~~~~~~gF~f~NPNa 94 (97)
T d1s98a_ 57 KGVKVVVDGKSMQFLDGTQLDFVKEGLNEGFKFTNPNV 94 (97)
T ss_dssp TTEEEEEEGGGHHHHTTCEEEEECSSTTCEEEEECTTS
T ss_pred CCCEEEEEHHHHHHHCCCEEEEEECCCCCCEEEECCCC
T ss_conf 89999982799987389999885668868469989888
No 4
>d1y71a1 b.34.16.1 (A:4-127) Kinase-associated protein B {Bacillus cereus [TaxId: 1396]}
Probab=2.67 E-value=1.5e+02 Score=5.12 Aligned_cols=18 Identities=22% Similarity=0.414 Sum_probs=7.2
Q ss_pred HHHHHHHHCCCCCHHHHH
Q ss_conf 578999710011023432
Q 002684 315 AEWYNICLDPLNNVEKFY 332 (893)
Q Consensus 315 ~~W~~~~~~a~~~~e~~~ 332 (893)
..|+++|+..|+++++.|
T Consensus 105 s~~a~~sL~~L~~LkkdY 122 (124)
T d1y71a1 105 SPFAERSLETLQQLKKDY 122 (124)
T ss_dssp SHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHH
T ss_conf 599999999999998864
No 5
>d1mwva2 a.93.1.3 (A:441-748) Catalase-peroxidase KatG {Burkholderia pseudomallei [TaxId: 28450]}
Probab=2.65 E-value=1.5e+02 Score=5.08 Aligned_cols=22 Identities=9% Similarity=0.063 Sum_probs=13.5
Q ss_pred HHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 9999865220588860469999
Q 002684 437 QDAIQEKFAVFGDKDHQAIDIL 458 (893)
Q Consensus 437 q~~~~~~~~~~~~k~~~a~dil 458 (893)
.+.+.+.|.-||=.++..|.+.
T Consensus 174 ~~~lR~~F~rMGl~D~E~VAL~ 195 (308)
T d1mwva2 174 EVLLVDKAQLLTLSAPEMTVLL 195 (308)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCCCEEEE
T ss_conf 6899999998168632230054
No 6
>d1ub2a2 a.93.1.3 (A:427-720) Catalase-peroxidase KatG {Synechococcus sp. pcc 7942 [TaxId: 1140]}
Probab=2.44 E-value=1.7e+02 Score=4.78 Aligned_cols=22 Identities=5% Similarity=0.066 Sum_probs=12.1
Q ss_pred HHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 9999865220588860469999
Q 002684 437 QDAIQEKFAVFGDKDHQAIDIL 458 (893)
Q Consensus 437 q~~~~~~~~~~~~k~~~a~dil 458 (893)
.+.+...|.-||=.++.-|.+.
T Consensus 162 ~~~lr~~f~rMGlnD~E~VAL~ 183 (294)
T d1ub2a2 162 KNCCLIATQLLGLTAPEMTVLI 183 (294)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHH
T ss_conf 2456678876378605446641
No 7
>d2ccaa2 a.93.1.3 (A:436-720) Catalase-peroxidase KatG {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=2.40 E-value=1.7e+02 Score=4.72 Aligned_cols=19 Identities=5% Similarity=-0.069 Sum_probs=10.7
Q ss_pred HHHHHHHHCCCCCCHHHHH
Q ss_conf 9998652205888604699
Q 002684 438 DAIQEKFAVFGDKDHQAID 456 (893)
Q Consensus 438 ~~~~~~~~~~~~k~~~a~d 456 (893)
+.+.++|.-|+=.++..|.
T Consensus 173 ~~lrd~f~rMGl~d~E~VA 191 (285)
T d2ccaa2 173 YMLLDKANLLTLSAPEMTV 191 (285)
T ss_dssp HHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHE
T ss_conf 8999999970542453410
No 8
>d1ux8a_ a.1.1.1 (A:) Protozoan/bacterial hemoglobin {Bacillus subtilis [TaxId: 1423]}
Probab=2.38 E-value=1.7e+02 Score=4.69 Aligned_cols=29 Identities=10% Similarity=0.394 Sum_probs=0.0
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 86643695689999752100036543489
Q 002684 114 NQDFQLHPDELERWFLKIDHIFEHTRVPP 142 (893)
Q Consensus 114 n~~~~l~~~el~~WF~~idH~~~htrip~ 142 (893)
+.+++|++++-.+|.+++..++...-+|+
T Consensus 71 H~~~~I~~~~fd~wl~~~~~al~~~~~~~ 99 (119)
T d1ux8a_ 71 HLPFPITNERADAWLSCMKDAMDHVGLEG 99 (119)
T ss_dssp HTTSCCCHHHHHHHHHHHHHHHHHHTCCS
T ss_pred HCCCCCCHHHHHHHHHHHHHHHHHCCCCH
T ss_conf 61799899999999999999998829999
No 9
>d2outa2 d.344.1.1 (A:4-70) Mu-like prophage FluMu protein gp35, HI1506 {Haemophilus influenzae [TaxId: 727]}
Probab=2.34 E-value=1.8e+02 Score=4.62 Aligned_cols=35 Identities=29% Similarity=0.624 Sum_probs=0.0
Q ss_pred CCCCEEEEEECCCCCCCCCCCCC-------------CCCCHHHHHHHHHCHHH
Q ss_conf 68836899978999898764324-------------56897889995520179
Q 002684 232 LENAYNIFILNPKHEKRARYGYR-------------RGLSDSEITFLKENKDL 271 (893)
Q Consensus 232 L~~sY~i~ilNPk~~~~a~YGYR-------------~G~S~sE~~~L~~n~~l 271 (893)
.++-|-++|-| +.+-||| ..+|++.|..||...-|
T Consensus 1 mdk~~~VvVqN-----riKdGYRRAGfSlhkGdN~l~~vse~QiaqLKaDpRL 48 (67)
T d2outa2 1 MDKTFCVVVQN-----RIKEGYRRAGFSFHLGDNSLAAVSESQLAQLKADPRL 48 (67)
T ss_dssp SSCCBCEEEEC-----CSCSCCCCSSSCCCSSEEECCCBSSHHHHHHHSSTTS
T ss_pred CCCEEEEEEEE-----ECCHHHHHCCEEEEECCHHHHHCCHHHHHHHCCCCEE
T ss_conf 98438999984-----0202244237056507307653138789874479759
No 10
>d1b43a2 c.120.1.2 (A:1-219) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=2.33 E-value=1.8e+02 Score=4.61 Aligned_cols=8 Identities=25% Similarity=0.501 Sum_probs=0.0
Q ss_pred EEEEEEEE
Q ss_conf 68689864
Q 002684 688 EVPIFWFI 695 (893)
Q Consensus 688 vIPVFvF~ 695 (893)
+.||||||
T Consensus 72 I~pVFVFD 79 (219)
T d1b43a2 72 IKPVYVFD 79 (219)
T ss_dssp CEEEEEEC
T ss_pred CEEEEEEC
T ss_conf 84999958
Done!