BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002685
(893 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9NUW8|TYDP1_HUMAN Tyrosyl-DNA phosphodiesterase 1 OS=Homo sapiens GN=TDP1 PE=1 SV=2
Length = 608
Score = 50.1 bits (118), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 54/115 (46%), Gaps = 12/115 (10%)
Query: 523 GIACHHPKLFVLQREDSIRVIVTSANLGAKQWNAVTNTVWWQDFPRRCAPDYLSLFVQTP 582
HH K+ +L E+ +RV++ ++NL W+ T +W +P Y + T
Sbjct: 258 AFGTHHTKMMLLLYEEGLRVVIHTSNLIHADWHQKTQGIW-------LSPLYPRIADGT- 309
Query: 583 VEEINQDSRSDFTAQLASFMASLVIDVPSQAHWIVELTKYDFASAAGHLVASVPG 637
+ +S + F A L S++ + + PS WI + K+D + +L+ S PG
Sbjct: 310 --HKSGESPTHFKADLISYL--MAYNAPSLKEWIDVIHKHDLSETNVYLIGSTPG 360
>sp|Q4G056|TYDP1_RAT Tyrosyl-DNA phosphodiesterase 1 OS=Rattus norvegicus GN=Tdp1 PE=2
SV=1
Length = 609
Score = 49.7 bits (117), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 54/115 (46%), Gaps = 12/115 (10%)
Query: 523 GIACHHPKLFVLQREDSIRVIVTSANLGAKQWNAVTNTVWWQDFPRRCAPDYLSLFVQTP 582
HH K+ +L E+ +RV++ ++NL + W+ T +W +P Y ++
Sbjct: 259 AFGTHHTKMMLLLYEEGLRVVIHTSNLIREDWHQKTQGIW-------LSPLYPRIYQGN- 310
Query: 583 VEEINQDSRSDFTAQLASFMASLVIDVPSQAHWIVELTKYDFASAAGHLVASVPG 637
+ +S + F A L S++ + + P WI + ++D + +L+ S PG
Sbjct: 311 --HTSGESSTHFKADLTSYL--MAYNAPPLQEWIDIIQEHDLSETNVYLIGSTPG 361
>sp|Q8BJ37|TYDP1_MOUSE Tyrosyl-DNA phosphodiesterase 1 OS=Mus musculus GN=Tdp1 PE=2 SV=2
Length = 609
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 53/115 (46%), Gaps = 12/115 (10%)
Query: 523 GIACHHPKLFVLQREDSIRVIVTSANLGAKQWNAVTNTVWWQDFPRRCAPDYLSLFVQTP 582
HH K+ +L E+ +RV++ ++NL + W+ T +W +P Y + +
Sbjct: 259 AFGTHHTKMMLLLYEEGLRVVIHTSNLIREDWHQKTQGIW-------LSPLYPRIDQGS- 310
Query: 583 VEEINQDSRSDFTAQLASFMASLVIDVPSQAHWIVELTKYDFASAAGHLVASVPG 637
+S + F A L S++ + + P WI + ++D + +L+ S PG
Sbjct: 311 --HTAGESSTRFKADLTSYLTAY--NAPPLQEWIDIIQEHDLSETNVYLIGSTPG 361
>sp|Q5XVJ4|FAN1_ARATH Fanconi-associated nuclease 1 homolog OS=Arabidopsis thaliana
GN=At1g48360 PE=2 SV=2
Length = 891
Score = 40.8 bits (94), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 48/94 (51%), Gaps = 16/94 (17%)
Query: 684 TAADSNGTQIKKLAAFLGKSFSAHGMLKI-----LLRRNTNVPADANAVSVLVPNPDELS 738
T + NG I+ +G+ FS L+I LLR NV D NA+ V+
Sbjct: 152 TLDEDNGEAIETF--IVGRKFSDVQDLEIGGDIFLLRHPENV-KDRNAIKVI-------- 200
Query: 739 DGDCIQLGFMPRDIAKWVSPLWDIGFIRFSGFIS 772
GD LG++P+DI++ +SPL D ++F G I+
Sbjct: 201 SGDSEMLGYLPKDISQCLSPLIDDYDLKFEGTIT 234
>sp|B2UXS3|MURC_CLOBA UDP-N-acetylmuramate--L-alanine ligase OS=Clostridium botulinum
(strain Alaska E43 / Type E3) GN=murC PE=3 SV=1
Length = 460
Score = 39.3 bits (90), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Query: 189 GFLILGIIFKEEVVLKRPRLVGTMASSGHSQGSVSSGTRSKRVFALRENDVSNPDSVFPK 248
G+ + G FKE +LK+ RL G GHS+ ++ A+ EN NP+ ++ K
Sbjct: 34 GYKVSGSDFKESEILKKLRLSGADIYIGHSEKNIKDVDLVVYTAAIPEN---NPELIYAK 90
Query: 249 LKRRDIFGRASFL 261
D+ RA FL
Sbjct: 91 ENNIDLMNRAEFL 103
>sp|Q9TXV7|TYDP1_CAEEL Probable tyrosyl-DNA phosphodiesterase OS=Caenorhabditis elegans
GN=F52C12.1 PE=3 SV=1
Length = 451
Score = 38.1 bits (87), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 50/118 (42%), Gaps = 19/118 (16%)
Query: 524 IACHHPKLFVLQREDS-IRVIVTSANLGAKQWNAVTNTVWWQDFPRRCAPDYLSLFVQTP 582
HH K+ +L+ ED VIV++ANL W T Q F Y + V+
Sbjct: 127 FGTHHTKMSILEDEDGRFHVIVSTANLVPDDWEFKT-----QQF-------YYNFGVKIA 174
Query: 583 VEEINQDSRSDFTAQLASFMASLVIDVPSQAHWIVELTKYDFASAAGHLVASVPGIHS 640
+ RSDF L +++ + + W L K DF+ + L+ S PG H+
Sbjct: 175 SGTV---PRSDFQDDLLEYLSMYRNQLDT---WKQLLQKVDFSQISDRLIFSTPGYHT 226
>sp|Q28147|PP1R8_BOVIN Nuclear inhibitor of protein phosphatase 1 OS=Bos taurus GN=PPP1R8
PE=1 SV=1
Length = 351
Score = 38.1 bits (87), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 33/59 (55%), Gaps = 5/59 (8%)
Query: 60 VDSLTLEPDRPYSIGRASINCDFTFDNRLVSRQHCQILFDSSERKIYVLD-----GTFL 113
++ L ++ + Y GR CDFT D++ SR H +++ ++++++D GTFL
Sbjct: 38 IEKLIIDEKKYYLFGRNPDLCDFTIDHQSCSRVHAALVYHKHLKRVFLIDLNSTHGTFL 96
>sp|Q12972|PP1R8_HUMAN Nuclear inhibitor of protein phosphatase 1 OS=Homo sapiens
GN=PPP1R8 PE=1 SV=2
Length = 351
Score = 38.1 bits (87), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 33/59 (55%), Gaps = 5/59 (8%)
Query: 60 VDSLTLEPDRPYSIGRASINCDFTFDNRLVSRQHCQILFDSSERKIYVLD-----GTFL 113
++ L ++ + Y GR CDFT D++ SR H +++ ++++++D GTFL
Sbjct: 38 IEKLIIDEKKYYLFGRNPDLCDFTIDHQSCSRVHAALVYHKHLKRVFLIDLNSTHGTFL 96
>sp|Q8R3G1|PP1R8_MOUSE Nuclear inhibitor of protein phosphatase 1 OS=Mus musculus
GN=Ppp1r8 PE=1 SV=1
Length = 351
Score = 38.1 bits (87), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 33/59 (55%), Gaps = 5/59 (8%)
Query: 60 VDSLTLEPDRPYSIGRASINCDFTFDNRLVSRQHCQILFDSSERKIYVLD-----GTFL 113
++ L ++ + Y GR CDFT D++ SR H +++ ++++++D GTFL
Sbjct: 38 IEKLIIDEKKYYLFGRNPDLCDFTIDHQSCSRVHAALVYHKHLKRVFLIDLNSTHGTFL 96
>sp|B2TI04|MURC_CLOBB UDP-N-acetylmuramate--L-alanine ligase OS=Clostridium botulinum
(strain Eklund 17B / Type B) GN=murC PE=3 SV=1
Length = 460
Score = 37.7 bits (86), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 46/101 (45%), Gaps = 9/101 (8%)
Query: 189 GFLILGIIFKEEVVLKRPRLVGTMASSGHSQGSVSSGTRSKRVFALRENDVSNPDSVFPK 248
G+ + G FKE +LK+ RL G GHS+ ++ A+ EN NP+ ++ K
Sbjct: 34 GYKVSGSDFKESEILKKLRLSGADIYIGHSEKNIKDVDLVVYTAAIPEN---NPELIYAK 90
Query: 249 LKRRDIFGRASFLLSQCRN------ILNSNDPVSCIQQIAN 283
++ RA FL S + I ++ +C ++N
Sbjct: 91 ENNIELMNRAEFLGSIMKGHKYNVAISGAHGKTTCTSMLSN 131
>sp|Q9VQM4|TYDP1_DROME Probable tyrosyl-DNA phosphodiesterase OS=Drosophila melanogaster
GN=gkt PE=2 SV=1
Length = 580
Score = 37.0 bits (84), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 51/118 (43%), Gaps = 14/118 (11%)
Query: 524 IACHHPKLFVLQRED-SIRVIVTSANLGAKQWNAVTNTVWWQDFPRRCAPDYLSLFVQTP 582
A H K+ L D S+RV++++ANL W+ T +W +P +L V
Sbjct: 244 FATSHTKMMFLGYSDGSMRVVISTANLYEDDWHNRTQGLW-------ISPKLPALPVD-- 294
Query: 583 VEEINQDSRSDFTAQLASFMASLVIDVPSQAH-WIVELTKYDFASAAGHLVASVPGIH 639
+ +S + F L ++ I SQ WI + DF++ + SVPG H
Sbjct: 295 ADTGAGESLTGFKQDLMLYLVEYKI---SQLQPWIARIRNSDFSAINVFFLGSVPGGH 349
>sp|Q3URD3|SLMAP_MOUSE Sarcolemmal membrane-associated protein OS=Mus musculus GN=Slmap
PE=1 SV=2
Length = 845
Score = 37.0 bits (84), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 10/56 (17%)
Query: 68 DRPYSIGRASINC-----DFTFDNRLVSRQHCQILFDSSERKIYVLD-----GTFL 113
D P IGR+ C + TFD +++SR H + FD K Y+ D GTF+
Sbjct: 25 DEPIKIGRSVARCRPAQNNATFDCKVLSRNHALVWFDHKTSKFYLQDTKSSNGTFI 80
>sp|P0C219|SLMAP_RAT Sarcolemmal membrane-associated protein OS=Rattus norvegicus
GN=Slmap PE=2 SV=1
Length = 858
Score = 36.6 bits (83), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 10/56 (17%)
Query: 68 DRPYSIGRASINC-----DFTFDNRLVSRQHCQILFDSSERKIYVLD-----GTFL 113
D P IGR+ C + TFD +++SR H + FD K Y+ D GTF+
Sbjct: 25 DEPIKIGRSVARCRPAQNNATFDCKVLSRNHALVWFDHKTSKFYLQDTKSSNGTFI 80
>sp|Q6IUF8|L_MACHU RNA-directed RNA polymerase L OS=Machupo virus GN=L PE=3 SV=1
Length = 2209
Score = 36.6 bits (83), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 78/168 (46%), Gaps = 17/168 (10%)
Query: 373 NKNATPGVKSKLLNSVDR---QNATHFGSMDKSKSLGSSCSPPGKKFYLNRLE-FMDLTS 428
++N T GVK L S+++ Q++ G + KS+GS C GK +L E + +
Sbjct: 1590 SRNFTKGVKKILAESINKSAFQSSVASGFIGFCKSMGSKCVRDGKGGFLYIKEVYSGINV 1649
Query: 429 LNYDVISL-PELLYPVESISRMFIATFTSDILW-FMSYCEIPSHLPVTIACHNTERCWST 486
++ +L P+++Y +S+++ ++ F+ ILW + S L +T AC E +ST
Sbjct: 1650 CICEICALKPKIIYCNDSLNK--VSQFSKPILWDYFS-------LVLTNACELGEWVFST 1700
Query: 487 SADKRTSVPYPNFPNLVLVFPPFPESV--AFGENCKKQGIACHHPKLF 532
+ + + N V P + G N Q I ++P LF
Sbjct: 1701 VKEPQKPLVLNNQNFFWAVKPKVVRQIEDQLGMNHVLQSIRRNYPVLF 1748
>sp|Q28623|SLMAP_RABIT Sarcolemmal membrane-associated protein OS=Oryctolagus cuniculus
GN=SLMAP PE=1 SV=2
Length = 771
Score = 36.2 bits (82), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 10/56 (17%)
Query: 68 DRPYSIGRASINC-----DFTFDNRLVSRQHCQILFDSSERKIYVLD-----GTFL 113
D P IGR+ C + TFD +++SR H + FD K Y+ D GTF+
Sbjct: 25 DEPIKIGRSVARCRPAQNNATFDCKVLSRNHALVWFDHKTGKFYLQDTKSSNGTFI 80
>sp|Q14BN4|SLMAP_HUMAN Sarcolemmal membrane-associated protein OS=Homo sapiens GN=SLMAP
PE=1 SV=1
Length = 828
Score = 35.8 bits (81), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 10/56 (17%)
Query: 68 DRPYSIGRASINC-----DFTFDNRLVSRQHCQILFDSSERKIYVLD-----GTFL 113
D P IGR+ C + TFD +++SR H + FD K Y+ D GTF+
Sbjct: 25 DEPIKIGRSVARCRPAQNNATFDCKVLSRNHALVWFDHKTGKFYLQDTKSSNGTFI 80
>sp|C5BP36|MURD_TERTT UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Teredinibacter
turnerae (strain ATCC 39867 / T7901) GN=murD PE=3 SV=1
Length = 453
Score = 33.5 bits (75), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 56/130 (43%), Gaps = 6/130 (4%)
Query: 660 IWSSDGKFLGSVETSVVGLSHLFRTAADSNGTQIKKLAAF-LGKSFSAHGMLKILLRRNT 718
I S +G+ + ++ GLS F+ G K F GK AH + IL+ R+
Sbjct: 327 INDSKATNVGAAQAAIAGLSASFKRILLIAGGDGKDANFFSFGKLVDAHVAVLILMGRDA 386
Query: 719 NVPADANAVSVLVPNPDELSDGDCIQLGFMPRDIAKWV--SPLWDIGFIRFSGFISRDEV 776
AD VS P + + +++ F + V SP F F+GF R
Sbjct: 387 GAIADC--VSDTTPVVQAQTMTEAVEVAFSSAEEGDLVLLSPAC-ASFDMFAGFEDRGRQ 443
Query: 777 LAAALEGISK 786
AAA+EG+++
Sbjct: 444 FAAAVEGLTE 453
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.134 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 328,838,093
Number of Sequences: 539616
Number of extensions: 13842495
Number of successful extensions: 31683
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 31668
Number of HSP's gapped (non-prelim): 24
length of query: 893
length of database: 191,569,459
effective HSP length: 127
effective length of query: 766
effective length of database: 123,038,227
effective search space: 94247281882
effective search space used: 94247281882
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 66 (30.0 bits)