Query 002688
Match_columns 892
No_of_seqs 550 out of 4179
Neff 8.0
Searched_HMMs 29240
Date Tue Mar 26 22:09:15 2013
Command hhsearch -i /local_scratch/syshi/lefta3m2/002688.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H2_81-85//hhsearch_pdb/002688hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gt4_A Tyrosine-protein kinase 1.0 1 1 397.1 16.3 260 577-855 22-304 (308)
2 4aoj_A High affinity nerve gro 1.0 1 1 389.6 26.0 255 584-857 44-319 (329)
3 4asz_A BDNF/NT-3 growth factor 1.0 1 1 389.4 19.6 257 582-857 14-289 (299)
4 4ase_A Vascular endothelial gr 1.0 1 1 383.3 15.6 266 577-860 60-350 (353)
5 3omv_A RAF proto-oncogene seri 1.0 1 1 380.5 23.7 257 583-856 38-299 (307)
6 3hmm_A TGF-beta receptor type- 1.0 1 1 376.4 20.1 269 583-860 5-300 (303)
7 4g3f_A NF-kappa-beta-inducing 1.0 1 1 372.0 21.2 263 583-869 60-328 (336)
8 4b9d_A Serine/threonine-protei 1.0 1 1 371.7 19.6 248 583-851 26-277 (350)
9 4fie_A Serine/threonine-protei 1.0 1 1 367.5 24.4 247 583-851 153-401 (423)
10 4fih_A Serine/threonine-protei 1.0 1 1 366.8 22.1 247 583-851 76-324 (346)
No 1
>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A
Probab=1.00 E-value=1 Score=397.13 Aligned_cols=260 Identities=25% Similarity=0.414 Sum_probs=214.9
Q ss_pred HHHHHHHHHHCEECCCCCEEEEEEEE-------CCCEEEEEECCCCCC-HHHHHHHHHHHHHHHCCCCCEEEEEEEEECC
Q ss_conf 99998643102003006499999998-------892799999168992-4568799999998841642101376476439
Q 002688 577 EVLRMTNNFERVLGKGGFGTVYHGKL-------DNDEVAVKMLSPSSS-QGYKQFQAEVKLLLRVHHRNLTTLVGYCDEG 648 (892)
Q Consensus 577 el~~~t~~~~~~IG~G~fG~Vy~a~~-------~~~~vaVK~l~~~~~-~~~~~f~~E~~~l~~l~H~nIv~l~~~~~~~ 648 (892)
|+...+.+|.+.||+|+||.||+|.+ ++..||||+++.... ...++|.+|+.++++++|||||+++|+|.++
T Consensus 22 ei~~~~~~~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~~ 101 (308)
T 4gt4_A 22 EISLSAVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVCLLGVVTKD 101 (308)
T ss_dssp BCCGGGEEEEEEEEECSSCEEEEEEEC-------CEEEEEEECCC-CCC-CHHHHHHHHHHHHHCCCTTBCCEEEEECSS
T ss_pred CCCHHHCEEEEEECCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEC
T ss_conf 28788885866913588848999998577658888699999988014968999999999999858998987736499889
Q ss_pred CCEEEEEEECCCCCHHHHCCCCC--------------CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEE
Q ss_conf 81899999545886021101367--------------5547999999999999999999970899995356789763798
Q 002688 649 TNMALIYEYMANGNLEEHLSDSS--------------KEILNWEERLRIAVEAALGLEYLHQGCKPPIVHRDVKSTNILI 714 (892)
Q Consensus 649 ~~~~LV~Ey~~~gsL~~~L~~~~--------------~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDLkp~NILl 714 (892)
+..++|||||++|+|.++|.... ...++|..++.|+.|+|.||+|||++ +++||||||+|||+
T Consensus 102 ~~~~lV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~---~iiHRDLK~~NILl 178 (308)
T 4gt4_A 102 QPLSMIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLSSH---HVVHKDLATRNVLV 178 (308)
T ss_dssp SSCEEEEECCSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEE
T ss_pred CEEEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC---CCCCCCCCCCCEEE
T ss_conf 988999981899949999986276543333221111246899999999999999999999868---99778736230688
Q ss_pred CCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH-CCCCCCCCCCCCCCC
Q ss_conf 6899389953068632237999632114568987448100023899940349999999999992-999998653589752
Q 002688 715 NEKFQAKLADFGLSRVFPVEGGTHVSTTIAGTPGYLDPEYYISNRLTEKSDVYSFGVVLLEIIT-GHPVISKSAENGHTH 793 (892)
Q Consensus 715 ~~~~~vkI~DfGla~~~~~~~~~~~~~~~~gt~~y~APE~~~~~~~s~ksDVwSlGvil~Ellt-G~~pf~~~~~~~~~~ 793 (892)
++++.+||+|||+++.+.............|++.|||||++.++.++.++|||||||++|||+| |+.||.....
T Consensus 179 ~~~~~~Ki~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~~s~ksDVwSfGvvl~El~t~g~~Pf~~~~~----- 253 (308)
T 4gt4_A 179 YDKLNVKISDLGLFREVYAADYYKLLGNSLLPIRWMAPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYSN----- 253 (308)
T ss_dssp CGGGCEEECCSCCBCGGGGGGCBCSSSSSCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTCCH-----
T ss_pred CCCCCEEECCCCCCEECCCCCCEEEECCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCH-----
T ss_conf 799978988760202336777404734512577656989982799996300015799999999689999999899-----
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 99999967302987643489788999978899999999973324979999988999999997
Q 002688 794 VAQWVSSMLDKGDIRSTVDPRLKGDFDINSVWKAVEIAMACVSSNANRRPFMNQVVMELNDC 855 (892)
Q Consensus 794 l~~~v~~~~~~~~~~~~iDp~l~~~~~~~~~~~l~~Li~~Cl~~~P~~RPsm~evl~~L~~~ 855 (892)
.+.... +..+... ..+.+++..+.+|+.+||+.+|++||||.||++.|+..
T Consensus 254 -~~~~~~-i~~~~~~---------~~p~~~~~~~~~li~~C~~~dP~~RPs~~ei~~~L~a~ 304 (308)
T 4gt4_A 254 -QDVVEM-IRNRQVL---------PCPDDCPAWVYALMIECWNEFPSRRPRFKDIHSRLRAW 304 (308)
T ss_dssp -HHHHHH-HHTTCCC---------CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTS
T ss_pred -HHHHHH-HHCCCCC---------CCCCCCHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHC
T ss_conf -999999-9819989---------99620369999999997587965792999999999853
No 2
>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}
Probab=1.00 E-value=1 Score=389.62 Aligned_cols=255 Identities=27% Similarity=0.436 Sum_probs=214.7
Q ss_pred HHHCEECCCCCEEEEEEEE-------CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCEEEEEE
Q ss_conf 3102003006499999998-------892799999168992456879999999884164210137647643981899999
Q 002688 584 NFERVLGKGGFGTVYHGKL-------DNDEVAVKMLSPSSSQGYKQFQAEVKLLLRVHHRNLTTLVGYCDEGTNMALIYE 656 (892)
Q Consensus 584 ~~~~~IG~G~fG~Vy~a~~-------~~~~vaVK~l~~~~~~~~~~f~~E~~~l~~l~H~nIv~l~~~~~~~~~~~LV~E 656 (892)
.+.+.||+|+||.||+|++ ++..||||+++.......++|.+|++++++++|||||+++++|.+....++|||
T Consensus 44 ~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~lV~E 123 (329)
T 4aoj_A 44 VLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRFFGVCTEGRPLLMVFE 123 (329)
T ss_dssp EEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEEEEE
T ss_pred EEEEEECCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEE
T ss_conf 88779714778489989987866577896999999775797999999999999985899899969899998998999998
Q ss_pred ECCCCCHHHHCCCCC-------------CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCEEEE
Q ss_conf 545886021101367-------------5547999999999999999999970899995356789763798689938995
Q 002688 657 YMANGNLEEHLSDSS-------------KEILNWEERLRIAVEAALGLEYLHQGCKPPIVHRDVKSTNILINEKFQAKLA 723 (892)
Q Consensus 657 y~~~gsL~~~L~~~~-------------~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDLkp~NILl~~~~~vkI~ 723 (892)
||++|+|.++++... ...++|..++.|+.|+|.||+|||+. +|+||||||+|||++.++.+||+
T Consensus 124 y~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~---~iiHRDLKp~NILl~~~~~~Ki~ 200 (329)
T 4aoj_A 124 YMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAGL---HFVHRDLATRNCLVGQGLVVKIG 200 (329)
T ss_dssp CCTTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEETTTEEEEC
T ss_pred CCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC---CEECCCCCHHHEEECCCCCEEEC
T ss_conf 279993999998607541001221124578899999999999999999998408---84226666764898899968976
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH-CCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 3068632237999632114568987448100023899940349999999999992-999998653589752999999673
Q 002688 724 DFGLSRVFPVEGGTHVSTTIAGTPGYLDPEYYISNRLTEKSDVYSFGVVLLEIIT-GHPVISKSAENGHTHVAQWVSSML 802 (892)
Q Consensus 724 DfGla~~~~~~~~~~~~~~~~gt~~y~APE~~~~~~~s~ksDVwSlGvil~Ellt-G~~pf~~~~~~~~~~l~~~v~~~~ 802 (892)
|||+++.+.............|++.|||||++.+..++.++|||||||++|||+| |+.||..... .+......
T Consensus 201 DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~~sDvwS~Gvvl~Ellt~G~~Pf~~~~~------~~~~~~i~ 274 (329)
T 4aoj_A 201 DFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQPWYQLSN------TEAIDCIT 274 (329)
T ss_dssp CCC----------------CCCCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSSCH------HHHHHHHH
T ss_pred CCCCCEECCCCCCCEECCCCCCCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCH------HHHHHHHH
T ss_conf 660333656787530047645565665826544799996630010578999998289999999899------99999998
Q ss_pred HCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 0298764348978899997889999999997332497999998899999999776
Q 002688 803 DKGDIRSTVDPRLKGDFDINSVWKAVEIAMACVSSNANRRPFMNQVVMELNDCLA 857 (892)
Q Consensus 803 ~~~~~~~~iDp~l~~~~~~~~~~~l~~Li~~Cl~~~P~~RPsm~evl~~L~~~~~ 857 (892)
...+. . .+..+...+.+|+.+||+.+|++||||+||++.|+.+.+
T Consensus 275 ~g~~~------~----~p~~~~~~~~~li~~cl~~dP~~RPs~~ei~~~L~~l~~ 319 (329)
T 4aoj_A 275 QGREL------E----RPRACPPEVYAIMRGCWQREPQQRHSIKDVHARLQALAQ 319 (329)
T ss_dssp HTCCC------C----CCTTCCHHHHHHHHHHCCSSTTTSCCHHHHHHHHHHHHH
T ss_pred CCCCC------C----CCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHH
T ss_conf 08989------9----864463999999999747596579299999999998745
No 3
>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*
Probab=1.00 E-value=1 Score=389.45 Aligned_cols=257 Identities=28% Similarity=0.453 Sum_probs=214.9
Q ss_pred HHHHHCEECCCCCEEEEEEEE-------CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCEEEE
Q ss_conf 643102003006499999998-------8927999991689924568799999998841642101376476439818999
Q 002688 582 TNNFERVLGKGGFGTVYHGKL-------DNDEVAVKMLSPSSSQGYKQFQAEVKLLLRVHHRNLTTLVGYCDEGTNMALI 654 (892)
Q Consensus 582 t~~~~~~IG~G~fG~Vy~a~~-------~~~~vaVK~l~~~~~~~~~~f~~E~~~l~~l~H~nIv~l~~~~~~~~~~~LV 654 (892)
.+.+.+.||+|+||.||+|++ ++..||||+++.......++|.+|++++++++|||||+++++|.+++..++|
T Consensus 14 ~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~lV 93 (299)
T 4asz_A 14 NIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVEGDPLIMV 93 (299)
T ss_dssp GEEEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEEE
T ss_pred HEEEEEEEEECCCCEEEEEEECCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEE
T ss_conf 92982498207882999999877666778879999996777858999999999999858998886287999569989999
Q ss_pred EEECCCCCHHHHCCCCC-----------CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCEEEE
Q ss_conf 99545886021101367-----------5547999999999999999999970899995356789763798689938995
Q 002688 655 YEYMANGNLEEHLSDSS-----------KEILNWEERLRIAVEAALGLEYLHQGCKPPIVHRDVKSTNILINEKFQAKLA 723 (892)
Q Consensus 655 ~Ey~~~gsL~~~L~~~~-----------~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDLkp~NILl~~~~~vkI~ 723 (892)
||||++|+|.++|+... ...++|..++.|+.|+|.||+|||++ +|+||||||+|||++.++.+||+
T Consensus 94 ~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~---~iiHRDlKp~NILl~~~~~~Ki~ 170 (299)
T 4asz_A 94 FEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLASQ---HFVHRDLATRNCLVGENLLVKIG 170 (299)
T ss_dssp EECCTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGGCEEEC
T ss_pred EECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC---CCCCCCCCHHHEEECCCCCEEEC
T ss_conf 985899968999986086421112357778899999999999999999999759---90467657763898799868988
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH-CCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 3068632237999632114568987448100023899940349999999999992-999998653589752999999673
Q 002688 724 DFGLSRVFPVEGGTHVSTTIAGTPGYLDPEYYISNRLTEKSDVYSFGVVLLEIIT-GHPVISKSAENGHTHVAQWVSSML 802 (892)
Q Consensus 724 DfGla~~~~~~~~~~~~~~~~gt~~y~APE~~~~~~~s~ksDVwSlGvil~Ellt-G~~pf~~~~~~~~~~l~~~v~~~~ 802 (892)
|||+++...............|++.|||||++.+..++.++|||||||++|||+| |+.||..... .+.... +
T Consensus 171 DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~k~DVwS~Gvvl~Ellt~G~~Pf~~~~~------~~~~~~-i 243 (299)
T 4asz_A 171 DFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLSN------NEVIEC-I 243 (299)
T ss_dssp CCSCHHHHTGGGCEEETTTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCH------HHHHHH-H
T ss_pred CCCCCEECCCCCCEEECCCEECCHHHCCHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCH------HHHHHH-H
T ss_conf 730010067887416647513470103889870799970366778899999998089999999899------999999-9
Q ss_pred HCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 0298764348978899997889999999997332497999998899999999776
Q 002688 803 DKGDIRSTVDPRLKGDFDINSVWKAVEIAMACVSSNANRRPFMNQVVMELNDCLA 857 (892)
Q Consensus 803 ~~~~~~~~iDp~l~~~~~~~~~~~l~~Li~~Cl~~~P~~RPsm~evl~~L~~~~~ 857 (892)
..+... ..+..++..+.+|+.+||+.+|++||||+++++.|+++..
T Consensus 244 ~~~~~~---------~~p~~~~~~~~~li~~cl~~dP~~RPs~~~i~~~L~~~~~ 289 (299)
T 4asz_A 244 TQGRVL---------QRPRTCPQEVYELMLGCWQREPHMRKNIKGIHTLLQNLAK 289 (299)
T ss_dssp HHTCCC---------CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred HCCCCC---------CCCCCCHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHH
T ss_conf 808988---------9974143999999999768796689299999999987776
No 4
>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*
Probab=1.00 E-value=1 Score=383.33 Aligned_cols=266 Identities=27% Similarity=0.415 Sum_probs=215.0
Q ss_pred HHHHHHHHHHCEECCCCCEEEEEEEEC-------CCEEEEEECCCCCC-HHHHHHHHHHHHHHHCCC-CCEEEEEEEEEC
Q ss_conf 999986431020030064999999988-------92799999168992-456879999999884164-210137647643
Q 002688 577 EVLRMTNNFERVLGKGGFGTVYHGKLD-------NDEVAVKMLSPSSS-QGYKQFQAEVKLLLRVHH-RNLTTLVGYCDE 647 (892)
Q Consensus 577 el~~~t~~~~~~IG~G~fG~Vy~a~~~-------~~~vaVK~l~~~~~-~~~~~f~~E~~~l~~l~H-~nIv~l~~~~~~ 647 (892)
|+.+..+.+.+.||+|+||.||+|.+. ++.||||++..... ...+.|.+|+.++.+++| ||||+++++|.+
T Consensus 60 Ei~~~~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~~~~~~~~~~E~~il~~l~hhpnIV~l~g~~~~ 139 (353)
T 4ase_A 60 EFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTK 139 (353)
T ss_dssp BCCGGGEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECC
T ss_pred EECHHHEEEEEEEECCCCEEEEEEEECCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEE
T ss_conf 70579959820982178959999998688854477599999976235868999999999999975799848778899994
Q ss_pred C-CCEEEEEEECCCCCHHHHCCCCC--------------CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCE
Q ss_conf 9-81899999545886021101367--------------55479999999999999999999708999953567897637
Q 002688 648 G-TNMALIYEYMANGNLEEHLSDSS--------------KEILNWEERLRIAVEAALGLEYLHQGCKPPIVHRDVKSTNI 712 (892)
Q Consensus 648 ~-~~~~LV~Ey~~~gsL~~~L~~~~--------------~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDLkp~NI 712 (892)
. ...++|||||++|+|.++|+... +..++|..++.++.|+|.||+|||++ +++||||||+||
T Consensus 140 ~~~~~~iV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~yLH~~---~iiHRDLK~~NI 216 (353)
T 4ase_A 140 PGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASR---KCIHRDLAARNI 216 (353)
T ss_dssp TTSCCEEEEECCTTEEHHHHHHHTGGGBCCC-------CTTCBCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGE
T ss_pred CCCEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHC---CEECCCCCCCCE
T ss_conf 69779999983898979999974356665433341011035689999999999999998767627---843574672113
Q ss_pred EECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH-CCCCCCCCCCCCC
Q ss_conf 986899389953068632237999632114568987448100023899940349999999999992-9999986535897
Q 002688 713 LINEKFQAKLADFGLSRVFPVEGGTHVSTTIAGTPGYLDPEYYISNRLTEKSDVYSFGVVLLEIIT-GHPVISKSAENGH 791 (892)
Q Consensus 713 Ll~~~~~vkI~DfGla~~~~~~~~~~~~~~~~gt~~y~APE~~~~~~~s~ksDVwSlGvil~Ellt-G~~pf~~~~~~~~ 791 (892)
|+++++.+||+|||+|+.+.............|++.|||||++.+..++.++|||||||++|||+| |+.||......
T Consensus 217 Ll~~~~~vKi~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~y~~ksDVwS~Gv~l~El~t~G~~Pf~~~~~~-- 294 (353)
T 4ase_A 217 LLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKID-- 294 (353)
T ss_dssp EECGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCS--
T ss_pred EECCCCCEEECCCHHHHHCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCCCCEEEHHHHHHHHHHCCCCCCCCCCHH--
T ss_conf 057999789796543222456887203254014666569899946999975537406899999981899999998989--
Q ss_pred CCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 529999996730298764348978899997889999999997332497999998899999999776663
Q 002688 792 THVAQWVSSMLDKGDIRSTVDPRLKGDFDINSVWKAVEIAMACVSSNANRRPFMNQVVMELNDCLAMEA 860 (892)
Q Consensus 792 ~~l~~~v~~~~~~~~~~~~iDp~l~~~~~~~~~~~l~~Li~~Cl~~~P~~RPsm~evl~~L~~~~~~~~ 860 (892)
+.+...+..+... .. +..+...+.+++.+||+.+|++|||+.+++++|+++++..+
T Consensus 295 ----~~~~~~i~~g~~~-----~~----p~~~~~~~~~li~~c~~~dP~~RPt~~eil~~L~~llq~~~ 350 (353)
T 4ase_A 295 ----EEFCRRLKEGTRM-----RA----PDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQANA 350 (353)
T ss_dssp ----HHHHHHHHHTCCC-----CC----CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHTC
T ss_pred ----HHHHHHHHCCCCC-----CC----CCCCCHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHHH
T ss_conf ----9999999738988-----88----86578999999999768696679399999999999998755
No 5
>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=380.48 Aligned_cols=257 Identities=30% Similarity=0.503 Sum_probs=207.6
Q ss_pred HHHHCEECCCCCEEEEEEEECCCEEEEEECCCC--CCHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCEEEEEEECCC
Q ss_conf 431020030064999999988927999991689--924568799999998841642101376476439818999995458
Q 002688 583 NNFERVLGKGGFGTVYHGKLDNDEVAVKMLSPS--SSQGYKQFQAEVKLLLRVHHRNLTTLVGYCDEGTNMALIYEYMAN 660 (892)
Q Consensus 583 ~~~~~~IG~G~fG~Vy~a~~~~~~vaVK~l~~~--~~~~~~~f~~E~~~l~~l~H~nIv~l~~~~~~~~~~~LV~Ey~~~ 660 (892)
..+.+.||+|+||.||+|++.+ .||||+++.. .....+.|.+|+.++++++|||||++++++.+ +..++|||||++
T Consensus 38 l~l~~~iG~G~fG~Vy~~~~~~-~vAvK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~-~~~~iVmEy~~g 115 (307)
T 3omv_A 38 VMLSTRIGSGSFGTVYKGKWHG-DVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTK-DNLAIVTQWCEG 115 (307)
T ss_dssp CCEEEECCCCSSSEEEEEESSS-EEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS-SSCEEEEECCSS
T ss_pred EEEEEEEEECCCCEEEEEEECC-CEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEC-CEEEEEEECCCC
T ss_conf 4984498208886899999899-68999997268999999999999999985899887469999978-958999974899
Q ss_pred CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCEEEEEECCCCCCCCCCCCCCC
Q ss_conf 86021101367554799999999999999999997089999535678976379868993899530686322379996321
Q 002688 661 GNLEEHLSDSSKEILNWEERLRIAVEAALGLEYLHQGCKPPIVHRDVKSTNILINEKFQAKLADFGLSRVFPVEGGTHVS 740 (892)
Q Consensus 661 gsL~~~L~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDLkp~NILl~~~~~vkI~DfGla~~~~~~~~~~~~ 740 (892)
|+|.++|+.... .++|..+..|+.|+|.||+|||++ +|+||||||+|||+++++.+||+|||+|+...........
T Consensus 116 GsL~~~l~~~~~-~l~~~~~~~i~~qia~gL~yLH~~---~IiHRDlKp~NILl~~~~~~Ki~DFGla~~~~~~~~~~~~ 191 (307)
T 3omv_A 116 SSLYKHLHVQET-KFQMFQLIDIARQTAQGMDYLHAK---NIIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRWSGSQQV 191 (307)
T ss_dssp CBHHHHHHTSCC-CCCHHHHHHHHHHHHHHHHHHHHT---TCBCSCCCSSSEEEETTEEEEECCCSSCBC----------
T ss_pred CCHHHHHHHCCC-CCCHHHHHHHHHHHHHHHHHHHHC---CCCCCCCCHHHEEECCCCCEEEEECCCCEECCCCCCCEEE
T ss_conf 878898752489-999999999999999999999779---9527855789978889990899441575424667764031
Q ss_pred CCCCCCCCCCCCCCCCC---CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 14568987448100023---899940349999999999992999998653589752999999673029876434897889
Q 002688 741 TTIAGTPGYLDPEYYIS---NRLTEKSDVYSFGVVLLEIITGHPVISKSAENGHTHVAQWVSSMLDKGDIRSTVDPRLKG 817 (892)
Q Consensus 741 ~~~~gt~~y~APE~~~~---~~~s~ksDVwSlGvil~ElltG~~pf~~~~~~~~~~l~~~v~~~~~~~~~~~~iDp~l~~ 817 (892)
....||+.|||||++.+ +.++.++|||||||++|||+||+.||..... . ..+...+..+.. .|.+.
T Consensus 192 ~~~~GT~~ymAPE~l~~~~~~~y~~ksDVwS~Gvvl~Elltg~~Pf~~~~~-----~-~~~~~~~~~~~~----~p~~~- 260 (307)
T 3omv_A 192 EQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHINN-----R-DQIIFMVGRGYA----SPDLS- 260 (307)
T ss_dssp --CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCC-----H-HHHHHHHHTTCC----CCCST-
T ss_pred CCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCH-----H-HHHHHHHHCCCC----CCCCC-
T ss_conf 564468772498786146899878687757289999999978899899996-----9-999999965888----88720-
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 999788999999999733249799999889999999977
Q 002688 818 DFDINSVWKAVEIAMACVSSNANRRPFMNQVVMELNDCL 856 (892)
Q Consensus 818 ~~~~~~~~~l~~Li~~Cl~~~P~~RPsm~evl~~L~~~~ 856 (892)
.....+...+.+|+.+||+.+|++||||.+|++.|+.+.
T Consensus 261 ~~~~~~~~~l~~li~~cl~~dP~~RPs~~ei~~~Le~l~ 299 (307)
T 3omv_A 261 KLYKNCPKAMKRLVADCVKKVKEERPLFPQILSSIELLQ 299 (307)
T ss_dssp TSCTTSCHHHHHHHHHHTCSSSTTSCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHH
T ss_conf 035445699999999975779768909899999999974
No 6
>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*
Probab=1.00 E-value=1 Score=376.44 Aligned_cols=269 Identities=24% Similarity=0.363 Sum_probs=207.9
Q ss_pred HHHHCEECCCCCEEEEEEEECCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCC----CEEEEEEEC
Q ss_conf 4310200300649999999889279999916899245687999999988416421013764764398----189999954
Q 002688 583 NNFERVLGKGGFGTVYHGKLDNDEVAVKMLSPSSSQGYKQFQAEVKLLLRVHHRNLTTLVGYCDEGT----NMALIYEYM 658 (892)
Q Consensus 583 ~~~~~~IG~G~fG~Vy~a~~~~~~vaVK~l~~~~~~~~~~f~~E~~~l~~l~H~nIv~l~~~~~~~~----~~~LV~Ey~ 658 (892)
+.+.+.||+|+||.||+|+++++.||||++...... ...++.|+..+..++|||||+++++|.+++ .+++|||||
T Consensus 5 i~L~~~iG~G~fG~Vy~~~~~g~~VAvK~l~~~~~~-~~~~e~Ei~~~~~l~HpNIv~l~g~~~~~~~~~~~~~lV~Ey~ 83 (303)
T 3hmm_A 5 IVLQESIGKGRFGEVWRGKWRGEEVAVKIFSSREER-SWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVSDYH 83 (303)
T ss_dssp EEEEEEEEECSSSEEEEEEETTEEEEEEEECGGGHH-HHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEEEECC
T ss_pred EEEEEEEEECCCEEEEEEEECCEEEEEEEECCCCHH-HHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCEEEEEEECCC
T ss_conf 999789840899399999999989999998831336-6999999999860899988709999984688723788775178
Q ss_pred CCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC-----CCCCCCCCCCCCCEEECCCCCEEEEEECCCCCCCC
Q ss_conf 5886021101367554799999999999999999997089-----99953567897637986899389953068632237
Q 002688 659 ANGNLEEHLSDSSKEILNWEERLRIAVEAALGLEYLHQGC-----KPPIVHRDVKSTNILINEKFQAKLADFGLSRVFPV 733 (892)
Q Consensus 659 ~~gsL~~~L~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~-----~~~iiHrDLkp~NILl~~~~~vkI~DfGla~~~~~ 733 (892)
++|+|.++|+.. .++|..+.+++.|++.||+|||+++ .++|+||||||+|||++.++.+||+|||+++....
T Consensus 84 ~~gsL~~~l~~~---~l~~~~~~~i~~~ia~gl~ylH~~~~~~~~~~~IiHRDlKp~NILl~~~~~~Ki~DFGla~~~~~ 160 (303)
T 3hmm_A 84 EHGSLFDYLNRY---TVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDS 160 (303)
T ss_dssp TTCBHHHHHHHC---CBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCCEECSCCCGGGEEECTTSCEEECCCTTCEEEET
T ss_pred CCCCHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCEEECCCCCEEEEECCCCCCCCC
T ss_conf 999689999757---99989999999999999999998524004789876246784208998899789984798745567
Q ss_pred CCCCC--CCCCCCCCCCCCCCCCCCCC------CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCC---------CCCHHH
Q ss_conf 99963--21145689874481000238------99940349999999999992999998653589---------752999
Q 002688 734 EGGTH--VSTTIAGTPGYLDPEYYISN------RLTEKSDVYSFGVVLLEIITGHPVISKSAENG---------HTHVAQ 796 (892)
Q Consensus 734 ~~~~~--~~~~~~gt~~y~APE~~~~~------~~s~ksDVwSlGvil~ElltG~~pf~~~~~~~---------~~~l~~ 796 (892)
..... ......||+.|||||++.+. .++.++|||||||++|||+||++|+....... .....+
T Consensus 161 ~~~~~~~~~~~~~GT~~ymAPE~l~~~~~~~~~~~~~k~DVwS~Gvvl~El~tg~~~~~~~~~~~~p~~~~~~~~~~~~~ 240 (303)
T 3hmm_A 161 ATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSVEE 240 (303)
T ss_dssp TTTEESCC-----CCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBCBTTBCCCCCCTTTTTSCSSCCHHH
T ss_pred CCCCEEEECCCCCCCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHCCCCCCHHHH
T ss_conf 77732210464246646269888456545567765706766647999999987899877665223531002545430999
Q ss_pred HHHHHHHCCCCCCCCCCCCCCC-CCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 9996730298764348978899-997889999999997332497999998899999999776663
Q 002688 797 WVSSMLDKGDIRSTVDPRLKGD-FDINSVWKAVEIAMACVSSNANRRPFMNQVVMELNDCLAMEA 860 (892)
Q Consensus 797 ~v~~~~~~~~~~~~iDp~l~~~-~~~~~~~~l~~Li~~Cl~~~P~~RPsm~evl~~L~~~~~~~~ 860 (892)
.... +... .++|.+... ...++...+.+|+.+||+.+|++||||.||++.|+++.+.+.
T Consensus 241 ~~~~-~~~~----~~rp~~p~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~ei~~~L~~l~~~~~ 300 (303)
T 3hmm_A 241 MRKV-VCEQ----KLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQQEG 300 (303)
T ss_dssp HHHH-HTTS----CCCCCCCGGGGSSHHHHHHHHHHHTTCCSSGGGSCCHHHHHHHHHHHHHC--
T ss_pred HHHH-HHCC----CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHCC
T ss_conf 9998-7502----5799887655665899999999999760597579599999999998898759
No 7
>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*
Probab=1.00 E-value=1 Score=371.96 Aligned_cols=263 Identities=20% Similarity=0.229 Sum_probs=211.1
Q ss_pred HHHHCEECCCCCEEEEEEEE--CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCEEEEEEECCC
Q ss_conf 43102003006499999998--8927999991689924568799999998841642101376476439818999995458
Q 002688 583 NNFERVLGKGGFGTVYHGKL--DNDEVAVKMLSPSSSQGYKQFQAEVKLLLRVHHRNLTTLVGYCDEGTNMALIYEYMAN 660 (892)
Q Consensus 583 ~~~~~~IG~G~fG~Vy~a~~--~~~~vaVK~l~~~~~~~~~~f~~E~~~l~~l~H~nIv~l~~~~~~~~~~~LV~Ey~~~ 660 (892)
+.+.++||+|+||.||+|+. ++..||||+++.... ..+|+.+++.++|||||++++++.+++..++|||||++
T Consensus 60 ~~~~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~~~-----~~~E~~il~~l~HpnIV~l~~~~~~~~~~~ivmEy~~g 134 (336)
T 4g3f_A 60 MTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEVF-----RVEELVACAGLSSPRIVPLYGAVREGPWVNIFMELLEG 134 (336)
T ss_dssp EEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTC-----CTHHHHTTTTCCCTTBCCEEEEEEETTEEEEEECCCTT
T ss_pred EEECCEECCCCCEEEEEEEECCCCCEEEEEEECHHHH-----HHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEECCCC
T ss_conf 1768685138780999999889998999999788886-----99999999857998999399999989999999966599
Q ss_pred CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCC-CEEEEEECCCCCCCCCCCCC-
Q ss_conf 8602110136755479999999999999999999708999953567897637986899-38995306863223799963-
Q 002688 661 GNLEEHLSDSSKEILNWEERLRIAVEAALGLEYLHQGCKPPIVHRDVKSTNILINEKF-QAKLADFGLSRVFPVEGGTH- 738 (892)
Q Consensus 661 gsL~~~L~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDLkp~NILl~~~~-~vkI~DfGla~~~~~~~~~~- 738 (892)
|+|.+++.... .+++.....++.|++.||+|||++ +|+||||||+|||++.++ .+||+|||+|+.+.......
T Consensus 135 g~L~~~l~~~~--~l~e~~~~~~~~qi~~aL~ylH~~---~IiHRDlKp~NILl~~~g~~vKl~DFGla~~~~~~~~~~~ 209 (336)
T 4g3f_A 135 GSLGQLIKQMG--CLPEDRALYYLGQALEGLEYLHTR---RILHGDVKADNVLLSSDGSRAALCDFGHALCLQPDGLGKS 209 (336)
T ss_dssp CBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHTT---TEECSCCCGGGEEECTTSCCEEECCCTTCEEC--------
T ss_pred CCHHHHHHHCC--CCCHHHHHHHHHHHHHHHHHHHHC---CCEECCCCHHHEEEECCCCEEEEEECCCCEECCCCCCCCC
T ss_conf 86999998769--999999999999999999999988---9042616778879958999799962787768567876540
Q ss_pred --CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf --211456898744810002389994034999999999999299999865358975299999967302987643489788
Q 002688 739 --VSTTIAGTPGYLDPEYYISNRLTEKSDVYSFGVVLLEIITGHPVISKSAENGHTHVAQWVSSMLDKGDIRSTVDPRLK 816 (892)
Q Consensus 739 --~~~~~~gt~~y~APE~~~~~~~s~ksDVwSlGvil~ElltG~~pf~~~~~~~~~~l~~~v~~~~~~~~~~~~iDp~l~ 816 (892)
.....+||+.|||||++.+..++.++||||+||++|||++|++||....... .+... ........
T Consensus 210 ~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~~~~--~~~~i----~~~~~~~~------- 276 (336)
T 4g3f_A 210 LLTGDYIPGTETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLNGCHPWTQYFRGP--LCLKI----ASEPPPIR------- 276 (336)
T ss_dssp ----CCCCCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSTTTCCSC--CHHHH----HHSCCGGG-------
T ss_pred EECCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHH--HHHHH----HCCCCCCH-------
T ss_conf 221785455802008999889998908999999999999997869989989999--99999----80899800-------
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 99997889999999997332497999998899999999776663103577324
Q 002688 817 GDFDINSVWKAVEIAMACVSSNANRRPFMNQVVMELNDCLAMEAAQKKESITT 869 (892)
Q Consensus 817 ~~~~~~~~~~l~~Li~~Cl~~~P~~RPsm~evl~~L~~~~~~~~~~~~~~~~~ 869 (892)
..+......+.+++.+|++.+|++|||+.|+++.|..+++....-+..-..+
T Consensus 277 -~~~~~~s~~~~~li~~~L~~dP~~R~sa~el~~~l~~~l~~~~~l~hPw~~~ 328 (336)
T 4g3f_A 277 -EIPPSCAPLTAQAIQEGLRKEPVHRASAMELRRKVGKALQEVGGLKSPWKGE 328 (336)
T ss_dssp -GSCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHTTSSCSCSSSS
T ss_pred -HCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf -2586679999999999762897689599999999999975443216987677
No 8
>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*
Probab=1.00 E-value=1 Score=371.65 Aligned_cols=248 Identities=23% Similarity=0.396 Sum_probs=207.5
Q ss_pred HHHHCEECCCCCEEEEEEEE--CCCEEEEEECCCCC--CHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCEEEEEEEC
Q ss_conf 43102003006499999998--89279999916899--245687999999988416421013764764398189999954
Q 002688 583 NNFERVLGKGGFGTVYHGKL--DNDEVAVKMLSPSS--SQGYKQFQAEVKLLLRVHHRNLTTLVGYCDEGTNMALIYEYM 658 (892)
Q Consensus 583 ~~~~~~IG~G~fG~Vy~a~~--~~~~vaVK~l~~~~--~~~~~~f~~E~~~l~~l~H~nIv~l~~~~~~~~~~~LV~Ey~ 658 (892)
|.+.+.||+|+||.||+|+. +++.||||++.... ....+.+.+|+.+++.++|||||++++++.+.+..++|||||
T Consensus 26 Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~yiVmEy~ 105 (350)
T 4b9d_A 26 YVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQYRESFEENGSLYIVMDYC 105 (350)
T ss_dssp EEEEEEC------CEEEEEETTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECC
T ss_pred EEEEEEEECCCCEEEEEEEECCCCCEEEEEEEEHHHCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEECC
T ss_conf 58847970277939999998899989999998658789799999999999998779989891999999899999999488
Q ss_pred CCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCEEEEEECCCCCCCCCCCCC
Q ss_conf 58860211013675547999999999999999999970899995356789763798689938995306863223799963
Q 002688 659 ANGNLEEHLSDSSKEILNWEERLRIAVEAALGLEYLHQGCKPPIVHRDVKSTNILINEKFQAKLADFGLSRVFPVEGGTH 738 (892)
Q Consensus 659 ~~gsL~~~L~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDLkp~NILl~~~~~vkI~DfGla~~~~~~~~~~ 738 (892)
++|+|.++|.......+++.....++.|++.||+|||++ +|+||||||+|||++.++.+||+|||+|+.+.. ...
T Consensus 106 ~gg~L~~~i~~~~~~~~~e~~~~~~~~qi~~aL~ylH~~---~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~--~~~ 180 (350)
T 4b9d_A 106 EGGDLFKRINAQKGVLFQEDQILDWFVQICLALKHVHDR---KILHRDIKSQNIFLTKDGTVQLGDFGIARVLNS--TVE 180 (350)
T ss_dssp TTCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHT---TCEETTCCGGGEEECTTCCEEECSTTEESCCCH--HHH
T ss_pred CCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHC---CEEECCCCHHHEEECCCCCEEECCCCCCEEECC--CCC
T ss_conf 998399999973899997899999999999999999989---915135978997987899989764652144068--854
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 21145689874481000238999403499999999999929999986535897529999996730298764348978899
Q 002688 739 VSTTIAGTPGYLDPEYYISNRLTEKSDVYSFGVVLLEIITGHPVISKSAENGHTHVAQWVSSMLDKGDIRSTVDPRLKGD 818 (892)
Q Consensus 739 ~~~~~~gt~~y~APE~~~~~~~s~ksDVwSlGvil~ElltG~~pf~~~~~~~~~~l~~~v~~~~~~~~~~~~iDp~l~~~ 818 (892)
.....+||+.|||||++.+..|+.++||||+||++|||++|++||.... ..+......... .. .+
T Consensus 181 ~~~~~~GT~~YmAPE~l~~~~y~~~~DiwSlGvilyemltG~~PF~~~~------~~~~~~~i~~~~-~~-----~~--- 245 (350)
T 4b9d_A 181 LARACIGTPYYLSPEICENKPYNNKSDIWALGCVLYELCTLKHAFEAGS------MKNLVLKIISGS-FP-----PV--- 245 (350)
T ss_dssp HHHHHHSCCTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSS------HHHHHHHHHHTC-CC-----CC---
T ss_pred CCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCC------HHHHHHHHHCCC-CC-----CC---
T ss_conf 1014578836039999879998959999999999999997879989969------999999998089-99-----99---
Q ss_pred CCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHH
Q ss_conf 997889999999997332497999998899999
Q 002688 819 FDINSVWKAVEIAMACVSSNANRRPFMNQVVME 851 (892)
Q Consensus 819 ~~~~~~~~l~~Li~~Cl~~~P~~RPsm~evl~~ 851 (892)
.......+.+|+.+|++.||++|||++|+++.
T Consensus 246 -~~~~s~~~~~li~~~L~~dP~~R~s~~e~l~h 277 (350)
T 4b9d_A 246 -SLHYSYDLRSLVSQLFKRNPRDRPSVNSILEK 277 (350)
T ss_dssp -CTTSCHHHHHHHHHHTCSSGGGSCCHHHHHTS
T ss_pred -CCCCCHHHHHHHHHHCCCCHHHCCCHHHHHCC
T ss_conf -75579999999999855896679089999639
No 9
>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}
Probab=1.00 E-value=1 Score=367.54 Aligned_cols=247 Identities=21% Similarity=0.330 Sum_probs=205.7
Q ss_pred HHHHCEECCCCCEEEEEEEE--CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCEEEEEEECCC
Q ss_conf 43102003006499999998--8927999991689924568799999998841642101376476439818999995458
Q 002688 583 NNFERVLGKGGFGTVYHGKL--DNDEVAVKMLSPSSSQGYKQFQAEVKLLLRVHHRNLTTLVGYCDEGTNMALIYEYMAN 660 (892)
Q Consensus 583 ~~~~~~IG~G~fG~Vy~a~~--~~~~vaVK~l~~~~~~~~~~f~~E~~~l~~l~H~nIv~l~~~~~~~~~~~LV~Ey~~~ 660 (892)
|.+.+.||+|+||.||+|+. ++..||||++........+.+.+|+.+|+.++|||||++++++..++..++|||||++
T Consensus 153 y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~iVmEy~~g 232 (423)
T 4fie_A 153 LDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFLEG 232 (423)
T ss_dssp EEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTTCSSGGGHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECCTT
T ss_pred CEEEEEECCCCCCEEEEEEECCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEECCCC
T ss_conf 38616962481848999999999989999998625546899999999999857998987168999989999999969899
Q ss_pred CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCEEEEEECCCCCCCCCCCCCCC
Q ss_conf 86021101367554799999999999999999997089999535678976379868993899530686322379996321
Q 002688 661 GNLEEHLSDSSKEILNWEERLRIAVEAALGLEYLHQGCKPPIVHRDVKSTNILINEKFQAKLADFGLSRVFPVEGGTHVS 740 (892)
Q Consensus 661 gsL~~~L~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDLkp~NILl~~~~~vkI~DfGla~~~~~~~~~~~~ 740 (892)
|+|.+++... .+++..+..++.|++.||+|||++ +|+||||||+|||++.++.+||+|||+|+.+... ....
T Consensus 233 G~L~~~i~~~---~l~e~~~~~~~~qil~aL~ylH~~---~IiHRDiKp~NILl~~~g~vKl~DFGla~~~~~~--~~~~ 304 (423)
T 4fie_A 233 GALTDIVTHT---RMNEEQIAAVCLAVLQALSVLHAQ---GVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKE--VPRR 304 (423)
T ss_dssp EEHHHHHHHS---CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSTTTEEECTTCCEEECCCTTCEECCSS--CCCB
T ss_pred CCHHHHHHCC---CCCHHHHHHHHHHHHHHHHHHHHC---CEECCCCCHHHEEECCCCCEEEECCCCCEECCCC--CCCC
T ss_conf 8289887616---989999999999999999999988---9044657877789858999898037265477788--7643
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 14568987448100023899940349999999999992999998653589752999999673029876434897889999
Q 002688 741 TTIAGTPGYLDPEYYISNRLTEKSDVYSFGVVLLEIITGHPVISKSAENGHTHVAQWVSSMLDKGDIRSTVDPRLKGDFD 820 (892)
Q Consensus 741 ~~~~gt~~y~APE~~~~~~~s~ksDVwSlGvil~ElltG~~pf~~~~~~~~~~l~~~v~~~~~~~~~~~~iDp~l~~~~~ 820 (892)
...+||+.|||||++.+..|+.++|||||||++|||++|++||..... .+... .+.... .+.+.. .
T Consensus 305 ~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~------~~~~~-~i~~~~-----~~~~~~--~ 370 (423)
T 4fie_A 305 KSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPP------LKAMK-MIRDNL-----PPRLKN--L 370 (423)
T ss_dssp CCCEECTTTCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCH------HHHHH-HHHHSC-----CCCCSC--T
T ss_pred CCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCH------HHHHH-HHHCCC-----CCCCCC--C
T ss_conf 466647472799997799999689999999999999978799898699------99999-997279-----988765--0
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCHHHHHHH
Q ss_conf 7889999999997332497999998899999
Q 002688 821 INSVWKAVEIAMACVSSNANRRPFMNQVVME 851 (892)
Q Consensus 821 ~~~~~~l~~Li~~Cl~~~P~~RPsm~evl~~ 851 (892)
......+.+|+.+||+.||++|||+.|+++.
T Consensus 371 ~~~s~~~~dli~~~L~~dP~~R~ta~ell~H 401 (423)
T 4fie_A 371 HKVSPSLKGFLDRLLVRDPAQRATAAELLKH 401 (423)
T ss_dssp TSSCHHHHHHHHHHSCSSTTTSCCHHHHTTC
T ss_pred CCCCHHHHHHHHHHCCCCHHHCCCHHHHHCC
T ss_conf 1299999999999867895689099999609
No 10
>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*
Probab=1.00 E-value=1 Score=366.77 Aligned_cols=247 Identities=21% Similarity=0.318 Sum_probs=205.1
Q ss_pred HHHHCEECCCCCEEEEEEEE--CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCEEEEEEECCC
Q ss_conf 43102003006499999998--8927999991689924568799999998841642101376476439818999995458
Q 002688 583 NNFERVLGKGGFGTVYHGKL--DNDEVAVKMLSPSSSQGYKQFQAEVKLLLRVHHRNLTTLVGYCDEGTNMALIYEYMAN 660 (892)
Q Consensus 583 ~~~~~~IG~G~fG~Vy~a~~--~~~~vaVK~l~~~~~~~~~~f~~E~~~l~~l~H~nIv~l~~~~~~~~~~~LV~Ey~~~ 660 (892)
+++.+.||+|+||.||+|+. +++.||||++........+.+.+|+.+++.++|||||++++++.+++..++|||||++
T Consensus 76 y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~ivmEy~~g 155 (346)
T 4fih_A 76 LDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFLEG 155 (346)
T ss_dssp EEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCSSGGGGHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEECCCTT
T ss_pred CEEEEEEECCCCEEEEEEEECCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEECCCC
T ss_conf 38707960272829999999899989999998527656899999999999867998999199999989999999969899
Q ss_pred CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCEEEEEECCCCCCCCCCCCCCC
Q ss_conf 86021101367554799999999999999999997089999535678976379868993899530686322379996321
Q 002688 661 GNLEEHLSDSSKEILNWEERLRIAVEAALGLEYLHQGCKPPIVHRDVKSTNILINEKFQAKLADFGLSRVFPVEGGTHVS 740 (892)
Q Consensus 661 gsL~~~L~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDLkp~NILl~~~~~vkI~DfGla~~~~~~~~~~~~ 740 (892)
|+|.+++... .+++.....++.|++.||+|||++ +|+||||||+|||++.++.+||+|||+++.+... ....
T Consensus 156 g~L~~~l~~~---~l~e~~~~~~~~qi~~aL~ylH~~---~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~--~~~~ 227 (346)
T 4fih_A 156 GALTDIVTHT---RMNEEQIAAVCLAVLQALSVLHAQ---GVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKE--VPRR 227 (346)
T ss_dssp EEHHHHHHHS---CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTCCEEECCCTTCEECCSS--SCCB
T ss_pred CCHHHHHHCC---CCCHHHHHHHHHHHHHHHHHHHHC---CCCCCCCCHHHEEECCCCCEEEECCCCCEECCCC--CCCC
T ss_conf 8089998718---989999999999999999999988---8355627889978879998899027575366788--7753
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 14568987448100023899940349999999999992999998653589752999999673029876434897889999
Q 002688 741 TTIAGTPGYLDPEYYISNRLTEKSDVYSFGVVLLEIITGHPVISKSAENGHTHVAQWVSSMLDKGDIRSTVDPRLKGDFD 820 (892)
Q Consensus 741 ~~~~gt~~y~APE~~~~~~~s~ksDVwSlGvil~ElltG~~pf~~~~~~~~~~l~~~v~~~~~~~~~~~~iDp~l~~~~~ 820 (892)
...+||+.|||||++.+..|+.++||||+||++|||++|++||..... .+.... +.... .+.+. ..
T Consensus 228 ~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~------~~~~~~-i~~~~-----~~~~~--~~ 293 (346)
T 4fih_A 228 KSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPP------LKAMKM-IRDNL-----PPRLK--NL 293 (346)
T ss_dssp CCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCH------HHHHHH-HHHSS-----CCCCS--CG
T ss_pred CCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCH------HHHHHH-HHCCC-----CCCCC--CC
T ss_conf 465627582799997799999689999999999999978799898599------999999-97179-----99887--50
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCHHHHHHH
Q ss_conf 7889999999997332497999998899999
Q 002688 821 INSVWKAVEIAMACVSSNANRRPFMNQVVME 851 (892)
Q Consensus 821 ~~~~~~l~~Li~~Cl~~~P~~RPsm~evl~~ 851 (892)
......+.+|+.+|++.||++|||++|+++.
T Consensus 294 ~~~s~~~~dli~~~L~~dP~~R~ta~e~l~H 324 (346)
T 4fih_A 294 HKVSPSLKGFLDRLLVRDPAQRATAAELLKH 324 (346)
T ss_dssp GGSCHHHHHHHHHHSCSSTTTSCCHHHHTTC
T ss_pred CCCCHHHHHHHHHHCCCCHHHCCCHHHHHCC
T ss_conf 2299999999999867995689099999609
Done!