Query 002689
Match_columns 892
No_of_seqs 426 out of 2171
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 05:08:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002689.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002689hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2194 Aminopeptidases of the 100.0 1E-129 2E-134 1141.5 58.7 737 64-884 32-834 (834)
2 PRK10199 alkaline phosphatase 100.0 3.1E-26 6.7E-31 252.9 29.0 260 86-367 30-345 (346)
3 PF04389 Peptidase_M28: Peptid 99.9 1.9E-28 4.2E-33 248.3 9.1 170 180-350 1-179 (179)
4 KOG2195 Transferrin receptor a 99.9 7.8E-22 1.7E-26 234.4 16.9 204 159-372 335-552 (702)
5 KOG3946 Glutaminyl cyclase [Po 99.8 2E-17 4.3E-22 173.6 17.8 249 82-362 46-334 (338)
6 COG2234 Iap Predicted aminopep 99.7 1.9E-16 4E-21 182.5 15.4 191 161-362 183-392 (435)
7 TIGR03176 AllC allantoate amid 99.5 2.8E-13 6.1E-18 155.3 14.7 127 87-247 3-141 (406)
8 PRK08262 hypothetical protein; 99.4 1E-12 2.3E-17 153.9 16.8 170 43-246 2-201 (486)
9 PRK12890 allantoate amidohydro 99.4 3.4E-12 7.4E-17 146.5 16.5 128 85-246 7-145 (414)
10 PRK09133 hypothetical protein; 99.4 5.6E-12 1.2E-16 147.2 18.6 151 82-261 32-203 (472)
11 PRK12891 allantoate amidohydro 99.4 3.4E-12 7.5E-17 146.6 16.0 128 83-244 6-145 (414)
12 TIGR01879 hydantase amidase, h 99.4 4.9E-12 1.1E-16 144.7 15.5 126 88-247 2-139 (401)
13 PRK13590 putative bifunctional 99.4 4.3E-12 9.4E-17 152.0 15.0 128 85-245 179-321 (591)
14 PRK09290 allantoate amidohydro 99.4 8.1E-12 1.8E-16 143.4 16.4 130 84-247 4-145 (413)
15 PRK13799 unknown domain/N-carb 99.4 4.7E-12 1E-16 151.6 14.4 127 85-245 179-321 (591)
16 PRK08596 acetylornithine deace 99.3 3E-11 6.6E-16 139.1 17.8 144 87-262 13-178 (421)
17 PRK12892 allantoate amidohydro 99.3 2.1E-11 4.6E-16 139.6 16.2 129 84-247 7-146 (412)
18 PRK06133 glutamate carboxypept 99.3 4.3E-11 9.3E-16 137.4 18.4 145 85-262 35-197 (410)
19 PRK12893 allantoate amidohydro 99.3 2.6E-11 5.7E-16 139.0 15.7 130 84-247 7-148 (412)
20 PRK08588 succinyl-diaminopimel 99.3 2.9E-11 6.3E-16 136.8 15.9 140 86-261 1-161 (377)
21 PRK07473 carboxypeptidase; Pro 99.3 6.2E-11 1.3E-15 134.7 18.3 149 84-263 8-174 (376)
22 PRK07906 hypothetical protein; 99.3 3.2E-11 7E-16 138.9 14.3 130 90-248 2-155 (426)
23 TIGR01910 DapE-ArgE acetylorni 99.2 7.4E-11 1.6E-15 133.5 15.4 145 91-262 2-167 (375)
24 PRK07338 hypothetical protein; 99.2 1.4E-10 3.1E-15 132.4 16.9 157 86-262 16-190 (402)
25 PRK07907 hypothetical protein; 99.2 1.6E-10 3.4E-15 134.3 17.3 142 86-261 17-183 (449)
26 TIGR01880 Ac-peptdase-euk N-ac 99.2 1.7E-10 3.8E-15 131.7 16.7 147 83-260 5-173 (400)
27 PRK09104 hypothetical protein; 99.2 1.6E-10 3.5E-15 134.8 16.2 146 85-261 15-190 (464)
28 PRK13983 diaminopimelate amino 99.2 3E-10 6.4E-15 129.2 17.2 150 87-260 5-180 (400)
29 PRK06446 hypothetical protein; 99.2 2.3E-10 5E-15 132.4 16.1 128 87-248 2-151 (436)
30 PF05450 Nicastrin: Nicastrin; 99.2 3.6E-10 7.9E-15 120.3 16.0 167 180-346 1-200 (234)
31 PRK04443 acetyl-lysine deacety 99.2 2.2E-10 4.7E-15 128.6 15.0 133 85-262 4-148 (348)
32 PRK08201 hypothetical protein; 99.2 3E-10 6.4E-15 132.2 16.6 147 86-262 13-183 (456)
33 PRK13013 succinyl-diaminopimel 99.2 4E-10 8.7E-15 129.7 17.4 152 86-262 13-188 (427)
34 TIGR01893 aa-his-dipept aminoa 99.2 2.4E-10 5.3E-15 133.8 15.6 136 86-262 3-165 (477)
35 KOG2275 Aminoacylase ACY1 and 99.2 3E-10 6.5E-15 126.5 14.7 123 111-263 49-193 (420)
36 COG4882 Predicted aminopeptida 99.1 6.2E-10 1.4E-14 121.0 15.5 175 162-370 178-365 (486)
37 PRK06915 acetylornithine deace 99.1 7.1E-10 1.5E-14 127.6 17.1 156 86-260 16-192 (422)
38 PRK06837 acetylornithine deace 99.1 6.8E-10 1.5E-14 128.2 16.6 144 86-245 19-184 (427)
39 TIGR01883 PepT-like peptidase 99.1 5.3E-10 1.1E-14 125.8 14.7 128 88-246 1-146 (361)
40 PRK07079 hypothetical protein; 99.1 7.6E-10 1.7E-14 129.3 16.5 147 84-260 14-189 (469)
41 PRK07522 acetylornithine deace 99.1 7.2E-10 1.6E-14 125.6 15.6 141 87-261 4-165 (385)
42 TIGR01892 AcOrn-deacetyl acety 99.1 7E-10 1.5E-14 124.6 14.9 135 92-261 2-156 (364)
43 PRK13381 peptidase T; Provisio 99.1 7.6E-10 1.6E-14 126.8 15.4 125 89-246 3-184 (404)
44 PRK05469 peptidase T; Provisio 99.1 7.5E-10 1.6E-14 127.0 15.3 126 87-244 2-184 (408)
45 PRK13007 succinyl-diaminopimel 99.1 1E-09 2.3E-14 122.8 15.9 133 86-261 6-155 (352)
46 PF09940 DUF2172: Domain of un 99.1 2.1E-09 4.6E-14 119.0 17.7 240 83-366 56-308 (386)
47 COG1363 FrvX Cellulase M and r 99.1 6.9E-09 1.5E-13 116.0 21.9 227 87-366 2-349 (355)
48 PRK06156 hypothetical protein; 99.1 1.9E-09 4.2E-14 127.6 18.4 136 85-261 44-213 (520)
49 PRK15026 aminoacyl-histidine d 99.1 1.7E-09 3.6E-14 127.0 17.1 138 84-262 7-171 (485)
50 PRK07318 dipeptidase PepV; Rev 99.1 1.2E-09 2.6E-14 127.6 15.2 127 86-248 13-167 (466)
51 PRK00466 acetyl-lysine deacety 99.1 1.5E-09 3.2E-14 121.8 15.1 129 86-263 9-149 (346)
52 PRK07205 hypothetical protein; 99.1 1.5E-09 3.2E-14 126.0 15.2 127 85-247 9-164 (444)
53 TIGR01882 peptidase-T peptidas 99.1 1.6E-09 3.4E-14 124.6 15.2 128 87-245 3-187 (410)
54 PRK08652 acetylornithine deace 99.1 1.7E-09 3.7E-14 120.7 14.6 130 87-261 2-143 (347)
55 PRK05111 acetylornithine deace 99.0 2.4E-09 5.2E-14 121.4 15.6 139 87-260 5-168 (383)
56 PRK13009 succinyl-diaminopimel 99.0 2.3E-09 5E-14 121.1 15.0 137 88-260 3-162 (375)
57 PF01546 Peptidase_M20: Peptid 99.0 1.7E-09 3.6E-14 109.7 11.7 165 183-361 1-188 (189)
58 TIGR03106 trio_M42_hydro hydro 99.0 2.4E-08 5.3E-13 112.2 20.9 147 197-360 181-339 (343)
59 COG0624 ArgE Acetylornithine d 99.0 5.2E-09 1.1E-13 119.9 15.6 145 87-261 13-180 (409)
60 PRK08651 succinyl-diaminopimel 99.0 6.3E-09 1.4E-13 118.4 16.1 148 85-263 4-173 (394)
61 PRK08554 peptidase; Reviewed 99.0 6E-09 1.3E-13 121.0 15.9 141 88-263 2-166 (438)
62 TIGR01886 dipeptidase dipeptid 99.0 4.4E-09 9.5E-14 123.0 14.5 126 87-248 13-166 (466)
63 PRK13004 peptidase; Reviewed 99.0 7.8E-09 1.7E-13 118.3 16.3 136 86-261 14-171 (399)
64 TIGR01902 dapE-lys-deAc N-acet 99.0 6E-09 1.3E-13 116.3 13.8 125 92-263 2-138 (336)
65 TIGR01246 dapE_proteo succinyl 98.9 8.9E-09 1.9E-13 116.3 14.9 135 90-260 2-159 (370)
66 TIGR01900 dapE-gram_pos succin 98.9 1.3E-08 2.8E-13 115.7 14.9 134 93-262 2-170 (373)
67 PRK09961 exoaminopeptidase; Pr 98.9 7.3E-08 1.6E-12 108.5 20.2 152 196-363 163-333 (344)
68 TIGR01887 dipeptidaselike dipe 98.9 1.6E-08 3.5E-13 117.6 14.2 123 87-246 2-153 (447)
69 KOG2526 Predicted aminopeptida 98.9 7.5E-08 1.6E-12 107.0 17.9 196 161-361 192-415 (555)
70 TIGR03107 glu_aminopep glutamy 98.9 1.5E-07 3.1E-12 106.2 20.3 150 197-364 176-342 (350)
71 TIGR01891 amidohydrolases amid 98.8 4.3E-08 9.2E-13 110.8 15.2 132 91-262 3-151 (363)
72 PRK09864 putative peptidase; P 98.8 2.4E-07 5.2E-12 104.5 20.1 149 197-363 173-341 (356)
73 TIGR03320 ygeY M20/DapE family 98.8 5.7E-08 1.2E-12 111.0 15.3 122 87-246 13-156 (395)
74 TIGR03526 selenium_YgeY putati 98.8 7.9E-08 1.7E-12 109.9 15.8 122 87-246 13-156 (395)
75 PRK08737 acetylornithine deace 98.7 1.2E-07 2.5E-12 107.7 13.8 130 86-261 5-155 (364)
76 PLN02693 IAA-amino acid hydrol 98.5 1.1E-06 2.5E-11 102.1 16.0 122 88-247 48-183 (437)
77 COG4187 RocB Arginine degradat 98.5 4.4E-07 9.6E-12 101.6 10.9 159 83-265 4-210 (553)
78 PLN02280 IAA-amino acid hydrol 98.5 2.7E-06 5.8E-11 100.0 16.9 134 89-258 95-243 (478)
79 COG4310 Uncharacterized protei 98.3 8.1E-06 1.8E-10 88.1 13.9 171 178-366 177-356 (435)
80 PF05343 Peptidase_M42: M42 gl 98.0 1.9E-05 4E-10 87.3 8.5 133 197-342 132-282 (292)
81 KOG2276 Metalloexopeptidases [ 97.9 9.7E-05 2.1E-09 82.7 13.3 142 85-246 14-179 (473)
82 KOG2657 Transmembrane glycopro 97.7 0.00033 7E-09 80.4 11.9 188 161-350 156-375 (596)
83 PF04114 Gaa1: Gaa1-like, GPI 95.8 0.47 1E-05 56.7 19.1 185 161-367 2-229 (504)
84 COG2195 PepD Di- and tripeptid 95.8 0.017 3.6E-07 66.8 6.7 60 198-260 143-203 (414)
85 COG1473 AbgB Metal-dependent a 95.4 0.36 7.8E-06 55.8 15.8 125 102-261 24-164 (392)
86 PRK02813 putative aminopeptida 90.2 0.97 2.1E-05 52.9 8.6 141 195-347 230-415 (428)
87 PTZ00371 aspartyl aminopeptida 88.0 3.5 7.6E-05 48.9 11.2 160 195-361 247-453 (465)
88 PRK02256 putative aminopeptida 79.7 2.6 5.6E-05 49.8 5.4 56 183-244 246-301 (462)
89 KOG3566 Glycosylphosphatidylin 67.3 61 0.0013 39.2 12.4 93 161-264 119-228 (617)
90 PF10190 Tmemb_170: Putative t 51.5 1.4E+02 0.003 28.5 9.5 50 420-470 31-80 (105)
91 PRK12821 aspartyl/glutamyl-tRN 50.5 4.9E+02 0.011 31.0 15.5 29 584-614 320-350 (477)
92 PF05620 DUF788: Protein of un 43.4 2.7E+02 0.0058 28.6 11.1 15 552-566 113-127 (170)
93 COG3152 Predicted membrane pro 42.3 1.4E+02 0.0031 29.2 8.5 24 573-598 71-94 (125)
94 PF10337 DUF2422: Protein of u 40.8 3.6E+02 0.0078 31.9 13.3 30 586-615 188-217 (459)
95 KOG3533 Inositol 1,4,5-trispho 39.1 7.7E+02 0.017 33.4 15.7 20 443-462 2260-2279(2706)
96 PF05656 DUF805: Protein of un 38.9 2.5E+02 0.0054 26.4 9.6 13 571-583 64-76 (120)
97 TIGR00203 cydB cytochrome d ox 38.0 7.1E+02 0.015 29.0 16.7 27 383-409 58-85 (378)
98 PRK08651 succinyl-diaminopimel 32.2 89 0.0019 35.7 6.3 56 306-366 338-393 (394)
99 PF05297 Herpes_LMP1: Herpesvi 30.5 17 0.00036 40.0 0.0 13 549-561 162-174 (381)
100 PRK07522 acetylornithine deace 26.6 1.6E+02 0.0034 33.5 7.0 74 276-364 311-384 (385)
101 TIGR02921 PEP_integral PEP-CTE 23.5 1.5E+03 0.032 28.2 18.6 28 473-500 147-174 (952)
102 PF11947 DUF3464: Protein of u 23.4 1.1E+02 0.0025 31.0 4.4 10 38-47 58-67 (153)
103 PRK08596 acetylornithine deace 21.4 1.7E+02 0.0036 34.1 6.0 56 306-366 363-418 (421)
104 PF06781 UPF0233: Uncharacteri 21.2 1.6E+02 0.0034 27.2 4.4 21 49-69 36-56 (87)
105 PF03176 MMPL: MMPL family; I 21.1 1.2E+03 0.025 26.0 16.6 34 435-472 171-204 (333)
106 PF11992 DUF3488: Domain of un 20.5 1.2E+03 0.027 26.1 16.1 16 583-598 156-171 (325)
107 PRK10263 DNA translocase FtsK; 20.3 7E+02 0.015 33.8 11.4 10 865-874 522-531 (1355)
108 PF07466 DUF1517: Protein of u 20.1 1.2E+03 0.027 26.0 18.4 47 204-250 240-286 (289)
No 1
>KOG2194 consensus Aminopeptidases of the M20 family [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=100.00 E-value=1e-129 Score=1141.50 Aligned_cols=737 Identities=32% Similarity=0.534 Sum_probs=642.2
Q ss_pred hhcccCCCCCCC--ccccCCCCCCHHHHHHHHHHHHhcCCCCCCCHHHH-HHHHHHHHHHHhhccccCCc-eeEEEEEEe
Q 002689 64 YYQYEHMPPPLT--ADQAGKRGFSEFEAIKHVKALTELGPHPVGSDALD-RALQYVFAAAQKIKETKHWE-VDVEVDFFH 139 (892)
Q Consensus 64 ~~~~~~lP~~~~--~~~~~~~~fs~erA~~~L~~L~~igpr~vGS~~~~-~a~~yL~~~l~~ig~~a~~~-~~ve~d~~~ 139 (892)
.+.+.++|.|++ .++..+++|+++||++++.+++++|||++||++|+ .+++|+.+|++++++++..+ +++|+|.+.
T Consensus 32 ~~~~~~~~~pl~~~~e~~~~~~f~~~rA~~~l~~ls~~G~~~~gS~~ne~~a~~~il~e~~~i~~~~~~~~~~~Evd~q~ 111 (834)
T KOG2194|consen 32 LYLFDHLPEPLTQPQEQTLPSQFSEARALKDLLSLSAAGPHPVGSDNNEMHASSFILKEVNKIRKGSQSDLYDMEVDLQS 111 (834)
T ss_pred HHHHhhccccCCCcchhcCchhhHHHHHHHHHHHHHhcCCcccCchhhHHHHHHHHHHHHHHHHhhhhcchhhheeceee
Confidence 344455555554 44445789999999999999999999999999998 99999999999999877654 567777665
Q ss_pred ccCCccccccccc--ccccccccccceEEEEEcCCCCCcCCCCEEEEeeecccccCCCCCCCchhHHHHHHHHHHHHHhc
Q 002689 140 AKSGANRLVSGAF--MGRTLIYSDLNHIVLRIQPKYASEAAENAILVSSHIDTVFAAEGAGDCSSCVAVMLELARAMSQW 217 (892)
Q Consensus 140 ~~~g~~~~~g~~~--~~~~~~y~~~~NVi~~i~g~~~~~~~~~~VLl~AH~DSv~~spGA~Dd~sgva~mLE~ar~L~~~ 217 (892)
. +|.+ ++++++|++++||++|+.+++ +.++.+||++||+||||.+|||+||++|||+|||++|++.+.
T Consensus 112 ~--------sg~~~~~~~~~~Y~~i~NIvVki~~k~--~~~~~~lLlnaHfDSvpt~~gAtDDg~~va~mLe~lRv~s~~ 181 (834)
T KOG2194|consen 112 A--------SGSFILEGMTLVYQNISNIVVKISPKN--GNDKNALLLNAHFDSVPTGPGATDDGSGVASMLEALRVLSKS 181 (834)
T ss_pred c--------cceeeehhhhheeeeeeeEEEecCCCC--CCccceeeeeccccccCCCCCCCcchhHHHHHHHHHHHhhcC
Confidence 4 2333 678999999999999999984 344469999999999999999999999999999999999998
Q ss_pred CCCCCceEEEEEeCCcCCCCCChHHHHhcCCccCCceEEEEeecccCCCCcceeecCCChhHHHHHHHHccCCCCcchhh
Q 002689 218 AHGFKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAIDLEAMGIGGKSGLFQAGPHPWAVENFAAAAKYPSGQVTAQ 297 (892)
Q Consensus 218 ~~~p~~~I~flf~~aEE~gl~GS~~fv~~h~~~~~v~a~INLD~~G~gG~~~lfq~g~~~~li~~~~~~a~~p~~~~l~~ 297 (892)
....+|+|+|+||++||.+++|||+|++||||+++++++||||++|+||++.+||+||++|+++.|.++++||+++++++
T Consensus 182 ~~~l~~~vVFLfNgaEE~~L~gsH~FItQH~w~~~~ka~INLea~GsGGreiLFQagp~~wl~k~Y~~~~phPf~stlge 261 (834)
T KOG2194|consen 182 DKLLTHSVVFLFNGAEESGLLGSHAFITQHPWSKNIKAVINLEAAGSGGREILFQAGPNHWLLKAYLQAAPHPFASTLGE 261 (834)
T ss_pred CCcccccEEEEecCcccchhhhcccceecChhhhhhheEEeccccCcccceeEEecCCchHHHHHHHhhCCCchhhhhHH
Confidence 87889999999999999999999999999999999999999999999999999999997799999999999999999999
Q ss_pred hccccCCCCCCCChHHHhhcCCCeEEEEEeeCCCCCCCCCCcCcCCCCHHHHHHHHHHHHHHHHHHHcCCCCCCCCCccc
Q 002689 298 DLFASGAITSATDFQVYKEVAGLSGLDFAYTDKSAVYHTKNDKLDLLKPGSLQHLGENMLAFLLQAASSTSLPKGNAMEK 377 (892)
Q Consensus 298 ~~f~~g~ips~TD~~~F~~~~GIPgld~a~~~~~~~YHT~~Dt~d~id~~sLq~~g~~~l~lv~~La~a~~l~~~~~~~~ 377 (892)
|+||+|+|||||||++|++++|+||+|+|+..|++.|||++|.++++.++++||+|+|++++++.++|+ ++.+
T Consensus 262 e~Fq~g~IpSdTDfrif~eyg~l~GLD~A~~~Ng~vYHTk~D~~~~i~~gs~q~tGen~L~~v~~lan~-el~~------ 334 (834)
T KOG2194|consen 262 ELFQSGIIPSDTDFRIFREYGHLPGLDMAFVKNGYVYHTKYDGIQYIPPGSLQHTGENILALVRSLANS-ELDN------ 334 (834)
T ss_pred HhhhcCcCccccchHHHHHhCCcccceeeeeeccceEEeecccccccCcchhhhhhhHHHHHHHHHhch-hhcc------
Confidence 999999999999999999999999999999999999999999999999999999999999999999998 5532
Q ss_pred cCCCCCCCeEEeeccCceEEEEechhHHHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002689 378 EGKTVHETAVYFDILGTYMVLYRQGFANMLHNSVIVQSLLIWTASLVMGGYPAAVSLALTCLSAILMLVFSVSFAVVIAF 457 (892)
Q Consensus 378 ~~~~~~~~~VyFd~~g~~~v~y~~~~~~~l~~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~va~ 457 (892)
.+..+++ +||||++|++|+.|+++++++||+.+ .+.++ ....+++...+++++++++.+++++++++++++++|+
T Consensus 335 ~~~~~~g-~vyfdv~g~~~~~y~~~~~~iLNi~i---~~~i~-l~~~~~g~~~~~~f~~~~~~~i~s~~~~~~l~~~~a~ 409 (834)
T KOG2194|consen 335 STERSKG-TVYFDVVGKYFLAYSESTGVILNITI---CISIW-LMSLRSGSSQLGKFILACLLQILSIVVAIGLPVLVAL 409 (834)
T ss_pred ccccCCC-ceehhhhhhhhheeehhhhhhhhhhh---hhhhh-hhhhcccchhhhhHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 3456667 99999999999999999999999332 22222 3334544446899999999999999999999999999
Q ss_pred hhccCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCchhHHHHHHHHHHHHHHHHHHHHH
Q 002689 458 ILPQISSSPVPYVANPWLAVGLFAAPAFLGALTGQHLGYIILKAYLANMFSKRMQLSPIVQADLIKLEAERWLFKAGFLQ 537 (892)
Q Consensus 458 ~~~~~~~~~~~w~~~~~l~igly~~p~l~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~~ 537 (892)
+++.++ .+|+||++||+++|||.||+++|+.+++.++...- | +.++. .++.+++++|+ +
T Consensus 410 ~l~~v~-l~~sw~s~p~l~~~ly~~p~~~gl~~~~~~y~~~~-~--------~~~~~--------~~~~~ql~~h~---~ 468 (834)
T KOG2194|consen 410 FLDWVG-LPLSWFSNPWLLLGLYYLPSLFGLAILQALYAKRS-K--------RHSLE--------YLQHDQLLLHS---L 468 (834)
T ss_pred Hhhccc-ccceeecchHHHHHHHHhHHHHHhhHHHHHHHhhc-c--------ccccc--------hhhHHHHHHHH---H
Confidence 999984 69999999999999999999999999998733211 1 11111 13556777886 7
Q ss_pred HHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 002689 538 WLILLALGNFYKIGSTFIALFWLVPPAFAYGFLEATLTPVRFPRPLKLATLLLGLAVPVLVSAGNFIRLANVIVAIVVRF 617 (892)
Q Consensus 538 ~~~l~~~~t~~~i~Say~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~v~ip~~~r~ 617 (892)
|++|++++|+++|||+|++++|+++|+++ ++++++..+|.++..|..++++||+.|+++.+|.+++++.+||||+||+
T Consensus 469 l~~l~~~~t~y~I~S~y~~~~~~~~~v~~--~~~~~~~~l~~~~~~~~~~~~i~~~~p~~~~ay~~~~~~~~fipm~Gr~ 546 (834)
T KOG2194|consen 469 LSILLIIMTYYGIRSAYLPLLLLLFYVIS--YLLNTLTILHLCGTLYLITLLICQVGPFLFAAYSTYSLVRTFIPMMGRF 546 (834)
T ss_pred HHHHHHHheecccchhHHHHHHHHHHHHH--HHHhhceeeccCCceeeeeeeeeehHhHHHHHHHHHHHHHeeecccccc
Confidence 88999999999999999999999999999 5577888899999999999999999999999999999999999999999
Q ss_pred cC--CCC--------------------------CcchhHHHHHHHHHHHHHHhhcCCCCCCCCCC-ccceEEEEEeeccc
Q 002689 618 DR--NPG--------------------------AKRPIAIASCVLFVLSLILVLSGTVPPFSEDT-ARAVNVVHVVDASG 668 (892)
Q Consensus 618 ~~--~p~--------------------------~~~~~~~~l~~~~~~~~~~~~~~~~~py~~~~-~~r~~~~h~~~~~~ 668 (892)
|. ||| ++|.++.+++.++.+++.+++|+.+|||++++ +||++++|++|+||
T Consensus 547 g~~~nPd~~i~~~~~~~~~l~~~f~i~l~~~fr~~~~i~~~l~~I~~~~~~i~~T~~~fPy~~~~~~~r~~~lH~~rtf~ 626 (834)
T KOG2194|consen 547 GNASNPDLSISFLNAFGANLIVGFLIPLVHLFRRSKSIILGLFGITAVILIIASTSIGFPYRPKTTVQRVPVLHVRRTFY 626 (834)
T ss_pred CCCCCchHHHHHHHHHHHHhhHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHhcCCcCCccccccceeEEEEeccccee
Confidence 55 897 57888888888888877779999999999774 56999999999999
Q ss_pred CCCCC---CCCcceeeccccCC--------CCCchhH---hhcccccccCCcccccccccceeeeeEeecCCCCcccCCC
Q 002689 669 KFGGK---QEPSSFIALYSTTP--------GKLTKEV---EQIKEGFVCGRDNVVDFVTLSMEYGCLTYDGTEGGWSQSD 734 (892)
Q Consensus 669 ~~d~~---~d~~~~~~l~~~~~--------~~l~~~~---~~c~~e~~CG~~~~~~~~~~p~y~~~~~~~~~~~~Wlp~~ 734 (892)
+++|. +|+++++..+|+.. .++++++ .+|+.+++||+ |+|+ |.+.+.+++|+|++
T Consensus 627 ~~~~~~~~~ds~~~i~~~D~r~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~---------p~y~--w~~~~~~~~~vp~~ 695 (834)
T KOG2194|consen 627 DRDGTSSQNDSGYFINSQDRRGAEVLPFTKSNLTDLSSVQADCDDEMMCGM---------PVYN--WIKPREQSLWVPNP 695 (834)
T ss_pred cccCceeecccceeeeecccccccCCcchhhcccccccccccccccccCCc---------eeee--ccccCccceEecCC
Confidence 99977 79999999887653 2344444 56899999999 8998 99999999999998
Q ss_pred CC-------ceeeeccccccccccccCCCceEEEEEEEcCCCeEEEEEec---eeecceeeecCCcccccCCcCCCCCCc
Q 002689 735 VP-------TIHVESEGFGIMDTKGNDNGRITKVSIDMKGSVRWSLAIDA---EEIEDFTFKEGSEELVPRDEKSGMDGW 804 (892)
Q Consensus 735 ~p-------~l~~~~~~~~~~~~~~~~~~~~~r~~f~~~g~~~~sl~I~p---~~i~~WSf~~~~~~~~~~~~~~~~~~~ 804 (892)
+| .+.+++|+ ..+ +++.|++|++.|++||++||+| +++.+|||.++ + +.+ + ..+
T Consensus 696 ~~v~~~~~~~l~l~sk~-------~~~-~~~~r~~~~i~~~d~~s~~i~p~~d~~~~~wsf~~~---~--~~~--~-~~~ 759 (834)
T KOG2194|consen 696 EPVIGPYPPNLKLLSKT-------SLD-NGNLRYEFSITGTDHISLFISPLNDVKVLDWSFTTS---P--LTE--N-KTP 759 (834)
T ss_pred ccccCCCCceEEEeecc-------ccC-CCceEEEEEEeccCceEEEEEecCCceEEEEeccCC---c--ccc--c-CCc
Confidence 75 67888887 444 6689999999999999999999 59999999644 3 333 2 226
Q ss_pred EEEEEEcC-CCCceEEEEEEEeccCCcccccccccccCCCCeEEEe------ccccCCCHHHHHHHhcCCCcccccCCCC
Q 002689 805 HIIQFSGG-KNAVSKFDLDLYWAKNSTESYHNANRKEKQRPLLKLR------TDFDRLTPKTERVLSKLPAWCSLFGKST 877 (892)
Q Consensus 805 ~~i~~s~G-~~~P~~F~l~l~~~~~~~~~~~~~~~~~~~~p~~~l~------~~~~~~t~~~~~fl~~fP~wa~~~gk~~ 877 (892)
|+||++|| ++.|++||||+++. ++++++| +|++ +|.+++||++++|+++||+||+.++|++
T Consensus 760 ~~i~~~yg~~~~p~~F~lel~~~-----------~~~~~v~-~k~~~~~h~~~~~~~~t~~~~~~~~~lP~~~~~~~~~~ 827 (834)
T KOG2194|consen 760 YHIYFSYGLDSTPLNFWLELEKE-----------EGVTDVP-FKLGVSAHYIHDLELITPEYKEFLETLPSWAATVDWST 827 (834)
T ss_pred eEEEEEeecCCCCceEEEEEeec-----------cCccCCc-eEEeeeeeeccchhhcCHHHHHHHHhCCchhhcccccc
Confidence 99999999 89999999999998 5688888 8888 4788999999999999999999999999
Q ss_pred Ccchhhc
Q 002689 878 SPQTLSF 884 (892)
Q Consensus 878 s~~~~~~ 884 (892)
|+....|
T Consensus 828 ~~~~~~~ 834 (834)
T KOG2194|consen 828 SYESWIF 834 (834)
T ss_pred chhheeC
Confidence 9987654
No 2
>PRK10199 alkaline phosphatase isozyme conversion aminopeptidase; Provisional
Probab=99.95 E-value=3.1e-26 Score=252.92 Aligned_cols=260 Identities=19% Similarity=0.258 Sum_probs=184.2
Q ss_pred HHHHHHHHHHHHh-cCCCCCCCHHHHHHHHHHHHHHHhhccccCCceeEEEEEEeccCCcccccccccccccc-cccccc
Q 002689 86 EFEAIKHVKALTE-LGPHPVGSDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTL-IYSDLN 163 (892)
Q Consensus 86 ~erA~~~L~~L~~-igpr~vGS~~~~~a~~yL~~~l~~ig~~a~~~~~ve~d~~~~~~g~~~~~g~~~~~~~~-~y~~~~ 163 (892)
.+-|.+++++|+. +++|..||+++.++++||.++|+++|. +++.+.+..... .. .. .+..+ ......
T Consensus 30 ~~~a~~~~~~ia~~~~gR~~gS~~E~~aA~yL~~~f~~lG~------~v~~q~f~~~~~-~~-~~---~g~~~~~~~~g~ 98 (346)
T PRK10199 30 GDFANTQARHIATFFPGRMTGSPAEMLSADYLRQQFQQMGY------QSDIRTFNSRYI-YT-AR---DNRKNWHNVTGS 98 (346)
T ss_pred cchHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHCCC------ceEeeeccccce-ee-cc---cccccccCCccc
Confidence 4566778888876 899999999999999999999999984 344433321000 00 00 00000 011468
Q ss_pred eEEEEEcCCCCCcCCCCEEEEeeecccccC--------------CCCCCCchhHHHHHHHHHHHHHhcCCCCCceEEEEE
Q 002689 164 HIVLRIQPKYASEAAENAILVSSHIDTVFA--------------AEGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLF 229 (892)
Q Consensus 164 NVi~~i~g~~~~~~~~~~VLl~AH~DSv~~--------------spGA~Dd~sgva~mLE~ar~L~~~~~~p~~~I~flf 229 (892)
|||++++|+ .++.|+++||+|||+. .|||.||++|||+|||++|.|.+. +++++|+|++
T Consensus 99 nVIa~~~G~-----~~~~Ill~AH~DTV~p~~~~~~~~~~~g~~~~GA~DnasGvA~lLe~ar~l~~~--~~~~~I~fv~ 171 (346)
T PRK10199 99 TVIAAHEGK-----APQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAERLKNV--PTEYGIRFVA 171 (346)
T ss_pred eEEEEECCC-----CCCeEEEEEEcCcCCCCCCCccccCCCCcccCCccccHHHHHHHHHHHHHHhhC--CCCCcEEEEE
Confidence 999999885 3478999999999852 379999999999999999999864 4788999999
Q ss_pred eCCcCCCCCChHHHHhcCCc--cCCceEEEEeecccCCCCcceeecCCC-hh-H---H-HHHHHHccCCCCcchh-----
Q 002689 230 NTGEEEGLNGAHSFVTQHPW--STTIRVAIDLEAMGIGGKSGLFQAGPH-PW-A---V-ENFAAAAKYPSGQVTA----- 296 (892)
Q Consensus 230 ~~aEE~gl~GS~~fv~~h~~--~~~v~a~INLD~~G~gG~~~lfq~g~~-~~-l---i-~~~~~~a~~p~~~~l~----- 296 (892)
+++||.|+.||+.|+++.+. .+++.++||+|+++.+ ....+..|.+ +. + . +...+.+ ...|..+.
T Consensus 172 ~~~EE~Gl~GS~~~~~~~~~~~~~~~~~~iNlD~~~~~-d~~~~~~g~~~~~~~~~~~~d~~~~~a-~~~g~~~~~~~~~ 249 (346)
T PRK10199 172 TSGEEEGKLGAENLLKRMSDTEKKNTLLVINLDNLIVG-DKLYFNSGVNTPEAVRKLTRDRALAIA-RRHGIAATTNPGL 249 (346)
T ss_pred ECCcccCcHHHHHHHHhcCccchhcEEEEEEeccCCCC-CceEEecCCCcHHHHhHHHHHHHHHHH-HHcCCccccCCCc
Confidence 99999999999999977543 4689999999999874 4445554442 21 1 1 1111221 11222221
Q ss_pred hhccccCCCCCCCChHHHhhcCCCeEEEEEe-------------------eCCCCCCC-CCCcCcCCCCH-------HHH
Q 002689 297 QDLFASGAITSATDFQVYKEVAGLSGLDFAY-------------------TDKSAVYH-TKNDKLDLLKP-------GSL 349 (892)
Q Consensus 297 ~~~f~~g~ips~TD~~~F~~~~GIPgld~a~-------------------~~~~~~YH-T~~Dt~d~id~-------~sL 349 (892)
+..|..| ....|||.+|.+ .|||.+.+.. +..+..+| |.+|+.+.++. ..+
T Consensus 250 ~~~~p~g-~~~rSDH~~F~~-~GIP~l~~~a~n~~~g~~d~~~q~~~~~~~~~g~~~h~~~~d~~~~l~~~~pgri~~~~ 327 (346)
T PRK10199 250 NKNYPKG-TGCCNDAEVFDK-AGIPVLSVEATNWNLGNKDGYQQRAKTAAFPAGNSWHDVRLDNQQHIDKALPGRIERRC 327 (346)
T ss_pred cccccCC-CcCCcccHHHHh-cCCCeEEeeccccccCCcccceecccCccCCCCccccCcCcchHHHHHHhcchHHHHHH
Confidence 1223334 245799999999 9999998842 12355789 89999999987 356
Q ss_pred HHHHHHHHHHHHHHHcCC
Q 002689 350 QHLGENMLAFLLQAASST 367 (892)
Q Consensus 350 q~~g~~~l~lv~~La~a~ 367 (892)
....+.++.++.+||++.
T Consensus 328 ~~~~~~~~~~~~~~~~~~ 345 (346)
T PRK10199 328 RDVVRIMLPLVKELAKAS 345 (346)
T ss_pred HhHHHHHHHHHHHHhccC
Confidence 677889999999999863
No 3
>PF04389 Peptidase_M28: Peptidase family M28; InterPro: IPR007484 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain is found in metallopeptidases belonging to the MEROPS peptidase family M28 (aminopeptidase Y, clan MH) []. They also contain a transferrin receptor-like dimerisation domain (IPR007365 from INTERPRO) and a protease-associated PA domain (IPR003137 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A 3BI1_A 2C6C_A ....
Probab=99.95 E-value=1.9e-28 Score=248.28 Aligned_cols=170 Identities=31% Similarity=0.481 Sum_probs=131.1
Q ss_pred CEEEEeeeccccc------CCCCCCCchhHHHHHHHHHHHHHhcCCCCCceEEEEEeCCcCCCCCChHHHHhc-CCccCC
Q 002689 180 NAILVSSHIDTVF------AAEGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEEEGLNGAHSFVTQ-HPWSTT 252 (892)
Q Consensus 180 ~~VLl~AH~DSv~------~spGA~Dd~sgva~mLE~ar~L~~~~~~p~~~I~flf~~aEE~gl~GS~~fv~~-h~~~~~ 252 (892)
++|+|+|||||++ ..+||+||++|||+|||+||.|.+.+.+++++|+|+|+++||.|+.||++|+++ +.+.++
T Consensus 1 e~ivi~aH~Ds~~~~~~~~~~~GA~DnasGva~lLelAr~l~~~~~~~~~~i~fv~~~~EE~gl~GS~~~~~~~~~~~~~ 80 (179)
T PF04389_consen 1 EYIVIGAHYDSVGGDADGSWSPGANDNASGVAALLELARVLKELKPQPKRTIRFVFFDGEEQGLLGSRAFVEHDHEELDN 80 (179)
T ss_dssp EEEEEEEE--BESCCC-TCSSS-TTTTHHHHHHHHHHHHHHHHSTHSSSEEEEEEEESSGGGTSHHHHHHHHHHHCHHHH
T ss_pred CEEEEEeecCCCCCcCCCcccCCcccchHHHHHHHHHHHHHHHhhcccCccEEEEEecccccCccchHHHHHhhhccccc
Confidence 4799999999988 889999999999999999999999777889999999999999999999999963 346689
Q ss_pred ceEEEEeecccCCCCcceeecCC-ChhHHHHHHHHccCCCCcchhhhccccCCCCCCCChHHHhhcCCCeEEEEEeeC-C
Q 002689 253 IRVAIDLEAMGIGGKSGLFQAGP-HPWAVENFAAAAKYPSGQVTAQDLFASGAITSATDFQVYKEVAGLSGLDFAYTD-K 330 (892)
Q Consensus 253 v~a~INLD~~G~gG~~~lfq~g~-~~~li~~~~~~a~~p~~~~l~~~~f~~g~ips~TD~~~F~~~~GIPgld~a~~~-~ 330 (892)
+.++||+|++|.+++....+..+ .++.++.+.+....+.+.....+.......+..+||.+|.. .|||++.+.... .
T Consensus 81 ~~~~inlD~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sD~~~F~~-~gip~~~~~~~~~~ 159 (179)
T PF04389_consen 81 IAAVINLDMIGSGDPTVYSEGSPSLPSRLEAYLSSFKQPYGSSLGPDVPPEKPTFGGSDHYPFSK-AGIPAVTLSSTDGY 159 (179)
T ss_dssp EEEEEEECSSBSSSSEEEEEEGGGHHHHHHHHHHHHHHHHHCHTSSECEEEESSTTSSTCHHHHT-TT-EEEEEEESSSS
T ss_pred ceeEEeccccccCcccceeeeeccccchhhhhhhhhhhhhhcccccccccccCCCCCCCcHhhhc-CCEeEEEEEecCCC
Confidence 99999999999988877777555 23434444332222333333333332334567899999997 999999999887 7
Q ss_pred CCCCCCCCcCcCCCCHHHHH
Q 002689 331 SAVYHTKNDKLDLLKPGSLQ 350 (892)
Q Consensus 331 ~~~YHT~~Dt~d~id~~sLq 350 (892)
.+.|||+.||++++|+++||
T Consensus 160 ~~~~Ht~~Dt~~~~~~~~l~ 179 (179)
T PF04389_consen 160 NPYYHTPEDTPDNLDPDTLQ 179 (179)
T ss_dssp GTTTTSTT-SGGGC-HHHH-
T ss_pred CCCCCCcccChhhcCCccCC
Confidence 78999999999999999987
No 4
>KOG2195 consensus Transferrin receptor and related proteins containing the protease-associated (PA) domain [Posttranslational modification, protein turnover, chaperones; Inorganic ion transport and metabolism; General function prediction only]
Probab=99.87 E-value=7.8e-22 Score=234.38 Aligned_cols=204 Identities=21% Similarity=0.312 Sum_probs=160.2
Q ss_pred ccccceEEEEEcCCCCCcCCCCEEEEeeecccccCCCCCCCchhHHHHHHHHHHHHHh---cCCCCCceEEEEEeCCcCC
Q 002689 159 YSDLNHIVLRIQPKYASEAAENAILVSSHIDTVFAAEGAGDCSSCVAVMLELARAMSQ---WAHGFKNAVIFLFNTGEEE 235 (892)
Q Consensus 159 y~~~~NVi~~i~g~~~~~~~~~~VLl~AH~DSv~~spGA~Dd~sgva~mLE~ar~L~~---~~~~p~~~I~flf~~aEE~ 235 (892)
-.+++||+++|+|+ .+++++|++++|.|||. .||.|+++|+|.|+|++|.+.. .|++|+|+|+|++|+|||.
T Consensus 335 ~~ki~NIig~I~Gs---~epD~~ViigahrDSw~--~Ga~dp~sGta~Ll~i~~~~~~~~k~gwrP~RtI~F~sWdAeEf 409 (702)
T KOG2195|consen 335 ETKIQNIIGKIEGS---EEPDRYVIIGAHRDSWT--FGAIDPNSGTALLLEIARALSKLKKRGWRPRRTILFASWDAEEF 409 (702)
T ss_pred eeeeeeEEEEEecC---cCCCeEEEEeccccccc--cCCcCCCccHHHHHHHHHHHHHHHHcCCCccceEEEEEccchhc
Confidence 44789999999997 57999999999999995 7999999999999999999865 6899999999999999999
Q ss_pred CCCChHHHHhcCC--ccCCceEEEEeecccCCCCcceeecCCChhHHHHHH---HHccCCCCcchhhhccccCCCCCCCC
Q 002689 236 GLNGAHSFVTQHP--WSTTIRVAIDLEAMGIGGKSGLFQAGPHPWAVENFA---AAAKYPSGQVTAQDLFASGAITSATD 310 (892)
Q Consensus 236 gl~GS~~fv~~h~--~~~~v~a~INLD~~G~gG~~~lfq~g~~~~li~~~~---~~a~~p~~~~l~~~~f~~g~ips~TD 310 (892)
|+.||..|++++. ...++.++||+|+++.++...-.+ .+|.+.+... +..+.|........+ .....+||
T Consensus 410 GliGStE~~E~~~~~L~~~av~yin~d~~~~~~~~l~~~--~~PlL~~li~~~~k~~~~p~~~~~~~~v---~~~g~~Sd 484 (702)
T KOG2195|consen 410 GLLGSTEWAEEYLKNLKSRAVVYINVDNAVLGDYTLHVK--TTPLLTDLIEEAAKSVLSPDKGDQSNRV---LSLGGGSD 484 (702)
T ss_pred cccccHHHHHHHHHHhhheeEEEEeccccccCCceeEEe--cCccHHHHHHHHHhccCCCCccccceeE---eccCCCCc
Confidence 9999999998885 357899999999999875443333 3454444443 334555433221111 12378999
Q ss_pred hHHHhhcCCCeEEEEEeeCCCCCCCCCCcCcCCC----CH--HHHHHHHHHHHHHHHHHHcCCCCCCC
Q 002689 311 FQVYKEVAGLSGLDFAYTDKSAVYHTKNDKLDLL----KP--GSLQHLGENMLAFLLQAASSTSLPKG 372 (892)
Q Consensus 311 ~~~F~~~~GIPgld~a~~~~~~~YHT~~Dt~d~i----d~--~sLq~~g~~~l~lv~~La~a~~l~~~ 372 (892)
|.+|..+.|||+++++|....+.|||.+||++.+ |+ ..+..++.+....+..+++.+.+|-+
T Consensus 485 ~~~F~~~~GIpsv~~~f~~~yP~yhs~~dt~~~~~k~~D~~~~~~~~~a~~~~~~~l~l~~d~llPfd 552 (702)
T KOG2195|consen 485 YASFLQFAGIPSVDFAFNRTYPFYHSTYDTYEWLDKLLDPKFKQHLAAAGVLGLELLILADDPLLPFD 552 (702)
T ss_pred chhhccccCcceeeeeecCCcceeecccCcHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCccccCc
Confidence 9999999999999999999889999999996554 33 34455666666777777777777653
No 5
>KOG3946 consensus Glutaminyl cyclase [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=2e-17 Score=173.60 Aligned_cols=249 Identities=18% Similarity=0.286 Sum_probs=183.4
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhccccCCceeEEEEEEeccCCcccccccccccccccccc
Q 002689 82 RGFSEFEAIKHVKALTELGPHPVGSDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSD 161 (892)
Q Consensus 82 ~~fs~erA~~~L~~L~~igpr~vGS~~~~~a~~yL~~~l~~ig~~a~~~~~ve~d~~~~~~g~~~~~g~~~~~~~~~y~~ 161 (892)
+.-+..|.++.|..+- -||.+||+++.++++||.+.++.++ -.+|.|.|..... .-+.+
T Consensus 46 ~~s~~~~~~~~L~p~l--v~Rvpgs~g~~~vr~~i~~~l~~l~------w~ve~~~f~~~tp-------------~g~~~ 104 (338)
T KOG3946|consen 46 PDSDWNRLWENLLPIL--VPRVPGSPGSRQVRRFIIQHLRNLG------WAVETDAFTDNTP-------------LGTRN 104 (338)
T ss_pred CCCCHHHHHHhhhhhh--ccccCCCCccHHHHHHHHHHHHhcC------ceeeeccccccCc-------------ceeee
Confidence 3456778888877775 3799999999999999999999996 3677777665211 11346
Q ss_pred cceEEEEEcCCCCCcCCCCEEEEeeecccccCC----CCCCCchhHHHHHHHHHHHHHhcC----CCCCceEEEEEeCCc
Q 002689 162 LNHIVLRIQPKYASEAAENAILVSSHIDTVFAA----EGAGDCSSCVAVMLELARAMSQWA----HGFKNAVIFLFNTGE 233 (892)
Q Consensus 162 ~~NVi~~i~g~~~~~~~~~~VLl~AH~DSv~~s----pGA~Dd~sgva~mLE~ar~L~~~~----~~p~~~I~flf~~aE 233 (892)
..|+|+++.+. ..+++++.|||||.-.. .||.|.+..||.||+++|++.+.- ..++-++.++|+|||
T Consensus 105 f~nii~tl~~~-----A~r~lVlachydsk~~p~~~~vgatdsAvpcamll~laq~l~~~~~~~~~~s~lsL~LvFFDGE 179 (338)
T KOG3946|consen 105 FNNLIATLDPN-----ASRYLVLACHYDSKIFPGGMFVGATDSAVPCAMLLNLAQALDKILCSKVSASQLSLQLVFFDGE 179 (338)
T ss_pred eeeEEEecCCC-----cchheeeecccccccCCCcceEeeccccccHHHHHHHHHHHHHHHhcccCcCceeEEEEEeccH
Confidence 79999999764 57889999999996432 689999999999999999998732 245678999999999
Q ss_pred C--------CCCCChHHHHhcC------C-----ccCCceEEEEeecccCCCCcc--eeecCCChhHHH--HH----HHH
Q 002689 234 E--------EGLNGAHSFVTQH------P-----WSTTIRVAIDLEAMGIGGKSG--LFQAGPHPWAVE--NF----AAA 286 (892)
Q Consensus 234 E--------~gl~GS~~fv~~h------~-----~~~~v~a~INLD~~G~gG~~~--lfq~g~~~~li~--~~----~~~ 286 (892)
| ..+.||++.+++. + ..+.+...+-+|-.|+.+++. .|.. ++.|..+ .. .++
T Consensus 180 EAf~eW~p~DSlYGsRhLA~~~~sw~~~~~r~~~~ld~idl~vLldllga~~p~f~~~~~~-t~~wF~Rl~~iE~~l~~~ 258 (338)
T KOG3946|consen 180 EAFEEWGPEDSLYGSRHLAAKWESWPHSGIRGDLLLDGIDLLVLLDLLGAPNPTFYNFFPN-TDRWFHRLQSIEGELALL 258 (338)
T ss_pred HHHhhcCCccccchHHHHHHHHhccCCCCCccccccccchHhhhHHHhcCCChhHhhcCcc-hHHHHHHHHHHHHHHHHH
Confidence 9 3579999998772 1 124677778888888877654 2222 2334321 11 111
Q ss_pred ---ccCCCCcchhhhccccCCCC--CCCChHHHhhcCCCeEEEEEeeCCCCCCCCCCcCcCCCCHHHHHHHHHHHHHHHH
Q 002689 287 ---AKYPSGQVTAQDLFASGAIT--SATDFQVYKEVAGLSGLDFAYTDKSAVYHTKNDKLDLLKPGSLQHLGENMLAFLL 361 (892)
Q Consensus 287 ---a~~p~~~~l~~~~f~~g~ip--s~TD~~~F~~~~GIPgld~a~~~~~~~YHT~~Dt~d~id~~sLq~~g~~~l~lv~ 361 (892)
..++ +-...|+.|... -++||.||.+ +|+|.+.+.-..-..+|||+.|+..++|..+..|++..+--++.
T Consensus 259 g~l~s~r----~~~~~Fq~~~~~~~veDDHiPFlr-rgVPVLHlI~~pFPsvWHt~dD~e~nldy~tt~~~~lilr~Fv~ 333 (338)
T KOG3946|consen 259 GLLASHR----LPPRYFQPGGLSSVVEDDHIPFLR-RGVPVLHLIPVPFPSVWHTPDDNERNLDYATTDNLALIIRVFVA 333 (338)
T ss_pred HHHHhcc----CCchhccccCccccccCCcchhhh-cCCceEEecCCCCcccccCccchhhcCCchhHHHHHHHHHHHHH
Confidence 1122 111234444321 3799999999 99999999988888899999999999999999999887776665
Q ss_pred H
Q 002689 362 Q 362 (892)
Q Consensus 362 ~ 362 (892)
+
T Consensus 334 e 334 (338)
T KOG3946|consen 334 E 334 (338)
T ss_pred H
Confidence 4
No 6
>COG2234 Iap Predicted aminopeptidases [General function prediction only]
Probab=99.69 E-value=1.9e-16 Score=182.48 Aligned_cols=191 Identities=25% Similarity=0.300 Sum_probs=135.9
Q ss_pred ccceEEEEEcCCCC-------CcCCCCEEEEeeecccccCCCCCCCchhHHHHHHHHHHHHHhcCCCCCceEEEEEeCCc
Q 002689 161 DLNHIVLRIQPKYA-------SEAAENAILVSSHIDTVFAAEGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGE 233 (892)
Q Consensus 161 ~~~NVi~~i~g~~~-------~~~~~~~VLl~AH~DSv~~spGA~Dd~sgva~mLE~ar~L~~~~~~p~~~I~flf~~aE 233 (892)
...|+++++++... ....++.+++++|+|+++.++||.||++|+|++||++|.|.+. +|+++|.|+++++|
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~s~~~~~GA~DNasGva~llEiAr~l~~~--~p~~~v~f~~~~aE 260 (435)
T COG2234 183 TSKNVAATISGSSQIIEAIIGTAHSDSLGLLGAHIDSVPTGPGADDNASGVAALLELARVLKGN--PPKRTVRFVAFGAE 260 (435)
T ss_pred EEEEEeeeeecccccceEEEeccCCCceeeecccccCCcCCCCcccccHHHHHHHHHHHHHhcC--CCCceEEEEEecch
Confidence 45566666655410 0246788999999999999999999999999999999999985 49999999999999
Q ss_pred CCCCCChHHHHhcCC--ccCCceEEEEeecccCCCCcceeecCC---C--hhHHHHHHHHccCCCCcchhhhccccCCCC
Q 002689 234 EEGLNGAHSFVTQHP--WSTTIRVAIDLEAMGIGGKSGLFQAGP---H--PWAVENFAAAAKYPSGQVTAQDLFASGAIT 306 (892)
Q Consensus 234 E~gl~GS~~fv~~h~--~~~~v~a~INLD~~G~gG~~~lfq~g~---~--~~li~~~~~~a~~p~~~~l~~~~f~~g~ip 306 (892)
|.|+.||+.|+.++. ..+++.++||+||.|..++...++... + +.......+...++... .+. ....
T Consensus 261 E~Gl~GS~~~~~~~~~~~~~~~~~viN~Dm~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~-~~~~ 334 (435)
T COG2234 261 ESGLLGSEAYVKRLSKDLDKKIALVINLDMLGSPNPTPTLILYGNGLERVPPGLRAVAALIGRPVDP-----STV-QDFD 334 (435)
T ss_pred hhcccccHHHHhcCCcchhhhhheEEecccccCCCCCcceEEeccCCccccchHHHHHHHHHhhccc-----ccc-CCCC
Confidence 999999999996665 357788899999999976333233221 1 11222222221122211 111 1234
Q ss_pred CCCChHHHhhcCCCeEEEEEeeCCC-----CCCCCCCcCcCCCCHHHHHHHHHHHHHHHHH
Q 002689 307 SATDFQVYKEVAGLSGLDFAYTDKS-----AVYHTKNDKLDLLKPGSLQHLGENMLAFLLQ 362 (892)
Q Consensus 307 s~TD~~~F~~~~GIPgld~a~~~~~-----~~YHT~~Dt~d~id~~sLq~~g~~~l~lv~~ 362 (892)
..+||.+|.. +|+|++.+...... .++||..|| ++ +..+++..+..+.+.+..
T Consensus 335 ~~sd~~~f~~-~gi~~~~~~~~~~~~~~~~~~~~t~~d~-~~-d~~~~~~~~~~~~~~~~~ 392 (435)
T COG2234 335 PRSDHYPFTE-AGIPSLFLFSGAPGGVEAVAWGHTAADT-DK-DLSTLDQHGDAVAATLVL 392 (435)
T ss_pred CCCcchhhhh-cCCcceeeeecCCccccccccccccccc-cc-chhhhcccchhhhhhhhh
Confidence 5799999998 99999988754333 489999999 88 888888777555444433
No 7
>TIGR03176 AllC allantoate amidohydrolase. This enzyme catalyzes the breakdown of allantoate, first to ureidoglycine by hydrolysis and then decarboxylation of one of the two equivalent ureido groups. Ureidoglycine then spontaneously exchanges ammonia for water resulting in ureidoglycolate. This enzyme is an alternative to allantoicase (3.5.3.4) which releases urea.
Probab=99.48 E-value=2.8e-13 Score=155.34 Aligned_cols=127 Identities=20% Similarity=0.126 Sum_probs=110.7
Q ss_pred HHHHHHHHHHHhcCC-------CCCCCHHHHHHHHHHHHHHHhhccccCCceeEEEEEEeccCCcccccccccccccccc
Q 002689 87 FEAIKHVKALTELGP-------HPVGSDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIY 159 (892)
Q Consensus 87 erA~~~L~~L~~igp-------r~vGS~~~~~a~~yL~~~l~~ig~~a~~~~~ve~d~~~~~~g~~~~~g~~~~~~~~~y 159 (892)
.|.++.|.+|++||. |...|++..++++|+.++++++|. ++.+|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~g~~R~~~s~~~~~a~~~~~~~~~~~Gl------~v~~D----------------------- 53 (406)
T TIGR03176 3 KHFRQAIEELSSFGADPAGGMTRLLYSPEWLAAQQQFKKRMAESGL------ETRFD----------------------- 53 (406)
T ss_pred HHHHHHHHHHhccCCCCCCceEeeeCCHHHHHHHHHHHHHHHHcCC------EEEEc-----------------------
Confidence 488999999999853 566789999999999999999983 45554
Q ss_pred cccceEEEEEcCCCCCcCCCCEEEEeeecccccCCCCCCCchhHHHHHHHHHHHHHhcCCCCCceEEEEEeCCcCCC---
Q 002689 160 SDLNHIVLRIQPKYASEAAENAILVSSHIDTVFAAEGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEEEG--- 236 (892)
Q Consensus 160 ~~~~NVi~~i~g~~~~~~~~~~VLl~AH~DSv~~spGA~Dd~sgva~mLE~ar~L~~~~~~p~~~I~flf~~aEE~g--- 236 (892)
...|++++++|. +++.++|++++|+||||. .|.-|+..||++.||++|.|.+.+.+|+++|.++++.+||.+
T Consensus 54 -~~gN~~~~~~g~---~~~~~~i~~gsHlDtv~~-gG~~dg~~Gv~~~le~~~~l~~~~~~~~~~i~vi~~~~EEg~rf~ 128 (406)
T TIGR03176 54 -DVGNLYGRLVGT---EFPEETILTGSHIDTVVN-GGNLDGQFGALAAWLAVDYLKEKYGAPLRTVEVLSMAEEEGSRFP 128 (406)
T ss_pred -CCCcEEEEecCC---CCCCCeEEEeccccCCCC-CCccCchhhHHHHHHHHHHHHHcCCCCCCCeEEEEeccccCccCC
Confidence 457999999997 345689999999999995 689999999999999999999998899999999999999976
Q ss_pred --CCChHHHHhcC
Q 002689 237 --LNGAHSFVTQH 247 (892)
Q Consensus 237 --l~GS~~fv~~h 247 (892)
+.||+.+..+.
T Consensus 129 ~~~~Gs~~~~g~~ 141 (406)
T TIGR03176 129 YVFWGSKNIFGLA 141 (406)
T ss_pred cccccHHHHhCCC
Confidence 99999998543
No 8
>PRK08262 hypothetical protein; Provisional
Probab=99.45 E-value=1e-12 Score=153.86 Aligned_cols=170 Identities=16% Similarity=0.170 Sum_probs=127.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCccccCCCCCCHHHHHHHHHHHHhcCCCCCCCHHH-------HHHHHH
Q 002689 43 RSGLAWTVAFAAFVYATYGVYYYQYEHMPPPLTADQAGKRGFSEFEAIKHVKALTELGPHPVGSDAL-------DRALQY 115 (892)
Q Consensus 43 ~~~~~~l~~~ll~~~~~~~v~~~~~~~lP~~~~~~~~~~~~fs~erA~~~L~~L~~igpr~vGS~~~-------~~a~~y 115 (892)
|++++.|+.++++++.++++++++|++.+..+++ ..+-.++.+++.+.|++|.+|.. +.+.+++ .+..+|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~L~~lv~i~S-~s~~~~~~~~~~~~~~~~~~ 78 (486)
T PRK08262 2 RRILLGLLALLLLLAAVLAVRTFRFKSRQIDVPA--VAPVAVDEDAAAERLSEAIRFRT-ISNRDRAEDDAAAFDALHAH 78 (486)
T ss_pred cchHHHHHHHHHHHHHhhhheeEEcccCCCCccc--cCCCcCCHHHHHHHHHHhcccce-eccCCCCcccHHHHHHHHHH
Confidence 5566666667777888899999999876655542 23456889999999999999732 2222211 357888
Q ss_pred HHHHHHhhccccCCceeEEEEEEeccCCcccccccccccccccccccceEEEEEcCCCCCcCCCCEEEEeeecccccC--
Q 002689 116 VFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDLNHIVLRIQPKYASEAAENAILVSSHIDTVFA-- 193 (892)
Q Consensus 116 L~~~l~~ig~~a~~~~~ve~d~~~~~~g~~~~~g~~~~~~~~~y~~~~NVi~~i~g~~~~~~~~~~VLl~AH~DSv~~-- 193 (892)
|.+++++++. .++.. .. +..|+++.++|. +...+.|++.+|+|+||.
T Consensus 79 L~~~~~~~g~------~~~~~--~~--------------------~~~~vv~~~~g~---~~~~~~ill~gH~DvVp~~~ 127 (486)
T PRK08262 79 LEESYPAVHA------ALERE--VV--------------------GGHSLLYTWKGS---DPSLKPIVLMAHQDVVPVAP 127 (486)
T ss_pred HHHhChhhhc------eeEEE--EE--------------------CCccEEEEEECC---CCCCCeEEEECcccccCCCC
Confidence 8888887762 22221 11 225888888775 123378999999999974
Q ss_pred ---------------------CCCCCCchhHHHHHHHHHHHHHhcCCCCCceEEEEEeCCcCCCCCChHHHHhc
Q 002689 194 ---------------------AEGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEEEGLNGAHSFVTQ 246 (892)
Q Consensus 194 ---------------------spGA~Dd~sgva~mLE~ar~L~~~~~~p~~~I~flf~~aEE~gl~GS~~fv~~ 246 (892)
++|+.|+++|++++|.+++.|.+.+.+++.+|.|+|..+||.|..|++.+++.
T Consensus 128 ~~~~~W~~~Pf~~~~~dg~lyGRG~~D~Kg~~aa~L~A~~~l~~~~~~l~~~I~llf~~dEE~g~~G~~~l~~~ 201 (486)
T PRK08262 128 GTEGDWTHPPFSGVIADGYVWGRGALDDKGSLVAILEAAEALLAQGFQPRRTIYLAFGHDEEVGGLGARAIAEL 201 (486)
T ss_pred CCcccCccCCCceEeeCCEEEecCccccchhHHHHHHHHHHHHHcCCCCCCeEEEEEecccccCCcCHHHHHHH
Confidence 36999999999999999999998877788999999999999988899988753
No 9
>PRK12890 allantoate amidohydrolase; Reviewed
Probab=99.40 E-value=3.4e-12 Score=146.45 Aligned_cols=128 Identities=19% Similarity=0.173 Sum_probs=106.8
Q ss_pred CHHHHHHHHHHHHhcC------CCCCCCHHHHHHHHHHHHHHHhhccccCCceeEEEEEEeccCCccccccccccccccc
Q 002689 85 SEFEAIKHVKALTELG------PHPVGSDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLI 158 (892)
Q Consensus 85 s~erA~~~L~~L~~ig------pr~vGS~~~~~a~~yL~~~l~~ig~~a~~~~~ve~d~~~~~~g~~~~~g~~~~~~~~~ 158 (892)
+.+++++++.+|.+|+ .|+..|.++.++.+||.++|+++|. +++.+
T Consensus 7 ~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~e~~~~~~l~~~l~~~G~------~~~~~---------------------- 58 (414)
T PRK12890 7 NGERLLARLEELAAIGRDGPGWTRLALSDEERAARALLAAWMRAAGL------EVRRD---------------------- 58 (414)
T ss_pred CHHHHHHHHHHHhccCCCCCceeeccCCHHHHHHHHHHHHHHHHCCC------EEEEc----------------------
Confidence 5689999999999875 3456788888999999999999983 33331
Q ss_pred ccccceEEEEEcCCCCCcCCCCEEEEeeecccccCCCCCCCchhHHHHHHHHHHHHHhcCCCCCceEEEEEeCCcCC---
Q 002689 159 YSDLNHIVLRIQPKYASEAAENAILVSSHIDTVFAAEGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEEE--- 235 (892)
Q Consensus 159 y~~~~NVi~~i~g~~~~~~~~~~VLl~AH~DSv~~spGA~Dd~sgva~mLE~ar~L~~~~~~p~~~I~flf~~aEE~--- 235 (892)
...|++++++|. ..+.+.|++++|+|+||. .|+.|+++|+|++|++++.|.+.+.+++++|.|+++.+||.
T Consensus 59 --~~~nlia~~~g~---~~~~~~l~~~~H~DtVp~-~g~~D~~~g~aa~l~a~~~l~~~~~~~~~~i~~~~~~dEE~~~~ 132 (414)
T PRK12890 59 --AAGNLFGRLPGR---DPDLPPLMTGSHLDTVPN-GGRYDGILGVLAGLEVVAALREAGIRPPHPLEVIAFTNEEGVRF 132 (414)
T ss_pred --CCCcEEEEeCCC---CCCCCEEEEeCcccCCCC-CCCcCCHHHHHHHHHHHHHHHHcCCCCCCCeEEEEEeccccccc
Confidence 235999999875 134578999999999985 57899999999999999999988878899999999999997
Q ss_pred --CCCChHHHHhc
Q 002689 236 --GLNGAHSFVTQ 246 (892)
Q Consensus 236 --gl~GS~~fv~~ 246 (892)
++.||+.+...
T Consensus 133 ~~~~~G~~~~~~~ 145 (414)
T PRK12890 133 GPSMIGSRALAGT 145 (414)
T ss_pred CCccccHHHHHcc
Confidence 67899888743
No 10
>PRK09133 hypothetical protein; Provisional
Probab=99.40 E-value=5.6e-12 Score=147.22 Aligned_cols=151 Identities=20% Similarity=0.233 Sum_probs=116.0
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhccccCCceeEEEEEEeccCCcccccccccccccccccc
Q 002689 82 RGFSEFEAIKHVKALTELGPHPVGSDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSD 161 (892)
Q Consensus 82 ~~fs~erA~~~L~~L~~igpr~vGS~~~~~a~~yL~~~l~~ig~~a~~~~~ve~d~~~~~~g~~~~~g~~~~~~~~~y~~ 161 (892)
++.+.+++.+.|++|.+|. -..+..++.++.+|+.++|+++|.+. ..+++ ... ..+
T Consensus 32 ~~~~~~~~~~~l~~Lv~i~-S~s~~~~e~~~~~~l~~~l~~~G~~~---~~~~~--~~~------------------~~~ 87 (472)
T PRK09133 32 PTADQQAARDLYKELIEIN-TTASTGSTTPAAEAMAARLKAAGFAD---ADIEV--TGP------------------YPR 87 (472)
T ss_pred cchhHHHHHHHHHHHhccC-CCCCCcchHHHHHHHHHHHHHcCCCc---eEEEe--ccC------------------CCC
Confidence 4678999999999999982 22223345689999999999998421 01222 110 014
Q ss_pred cceEEEEEcCCCCCcCCCCEEEEeeecccccC--------------------CCCCCCchhHHHHHHHHHHHHHhcCCCC
Q 002689 162 LNHIVLRIQPKYASEAAENAILVSSHIDTVFA--------------------AEGAGDCSSCVAVMLELARAMSQWAHGF 221 (892)
Q Consensus 162 ~~NVi~~i~g~~~~~~~~~~VLl~AH~DSv~~--------------------spGA~Dd~sgva~mLE~ar~L~~~~~~p 221 (892)
..||+++++|+ .+.+.|++++|+|+||. ++|+.|+++|+|++|++++.|.+.+..+
T Consensus 88 ~~nli~~~~g~----~~~~~lll~~H~DtVp~~~~~W~~dPf~~~~~dg~iyGRGa~D~Kg~~aa~l~a~~~l~~~~~~~ 163 (472)
T PRK09133 88 KGNLVARLRGT----DPKKPILLLAHMDVVEAKREDWTRDPFKLVEENGYFYGRGTSDDKADAAIWVATLIRLKREGFKP 163 (472)
T ss_pred ceeEEEEecCC----CCCCcEEEEeecccCCCChhcCCCCCCcceEeCCEEEecCcccchHHHHHHHHHHHHHHhcCCCC
Confidence 57999999875 23467999999999984 4899999999999999999999887788
Q ss_pred CceEEEEEeCCcC-CCCCChHHHHhcCCccCCceEEEEeec
Q 002689 222 KNAVIFLFNTGEE-EGLNGAHSFVTQHPWSTTIRVAIDLEA 261 (892)
Q Consensus 222 ~~~I~flf~~aEE-~gl~GS~~fv~~h~~~~~v~a~INLD~ 261 (892)
+++|.|++..+|| .|..|++.++++++...+..++|+ |.
T Consensus 164 ~~~i~~~~~~dEE~~g~~G~~~l~~~~~~~~~~~~~i~-e~ 203 (472)
T PRK09133 164 KRDIILALTGDEEGTPMNGVAWLAENHRDLIDAEFALN-EG 203 (472)
T ss_pred CCCEEEEEECccccCccchHHHHHHHHhhccCeEEEEE-CC
Confidence 9999999999999 889999999977653334567777 64
No 11
>PRK12891 allantoate amidohydrolase; Reviewed
Probab=99.40 E-value=3.4e-12 Score=146.61 Aligned_cols=128 Identities=20% Similarity=0.214 Sum_probs=107.6
Q ss_pred CCCHHHHHHHHHHHHhcC--C-----CCCCCHHHHHHHHHHHHHHHhhccccCCceeEEEEEEeccCCcccccccccccc
Q 002689 83 GFSEFEAIKHVKALTELG--P-----HPVGSDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGR 155 (892)
Q Consensus 83 ~fs~erA~~~L~~L~~ig--p-----r~vGS~~~~~a~~yL~~~l~~ig~~a~~~~~ve~d~~~~~~g~~~~~g~~~~~~ 155 (892)
.++.+|.+++++.|.+|| | |...|.++.++++||.++|++.|. +++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~g~~r~~~~~~e~~~~~~l~~~l~~~G~------~v~~~------------------- 60 (414)
T PRK12891 6 RVDGERLWASLERMAQIGATPKGGVCRLALTDGDREARDLFVAWARDAGC------TVRVD------------------- 60 (414)
T ss_pred ccCHHHHHHHHHHHHhccCCCCCceeeccCCHHHHHHHHHHHHHHHHCCC------EEEEC-------------------
Confidence 346679999999999985 2 667788888999999999999983 44432
Q ss_pred cccccccceEEEEEcCCCCCcCCCCEEEEeeecccccCCCCCCCchhHHHHHHHHHHHHHhcCCCCCceEEEEEeCCcCC
Q 002689 156 TLIYSDLNHIVLRIQPKYASEAAENAILVSSHIDTVFAAEGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEEE 235 (892)
Q Consensus 156 ~~~y~~~~NVi~~i~g~~~~~~~~~~VLl~AH~DSv~~spGA~Dd~sgva~mLE~ar~L~~~~~~p~~~I~flf~~aEE~ 235 (892)
...|++++++|. +...+.|++++|+||||. .|..|+++||+++|++++.|.+.+.+++++|.|+++.+||.
T Consensus 61 -----~~gNl~a~~~g~---~~~~~~l~~~~H~DtVp~-gg~~D~k~Gv~a~l~a~~~l~~~~~~~~~~i~v~~~~dEE~ 131 (414)
T PRK12891 61 -----AMGNLFARRAGR---DPDAAPVMTGSHADSQPT-GGRYDGIYGVLGGLEVVRALNDAGIETERPVDVVIWTNEEG 131 (414)
T ss_pred -----CCCCEEEEecCC---CCCCCeEEEEecccCCCC-CccccchhhHHHHHHHHHHHHHcCCCCCCCeEEEEeccccc
Confidence 235999999875 234588999999999985 47789999999999999999998888999999999999997
Q ss_pred C-----CCChHHHH
Q 002689 236 G-----LNGAHSFV 244 (892)
Q Consensus 236 g-----l~GS~~fv 244 (892)
+ +.||+.+.
T Consensus 132 ~~f~~~~~Gs~~~~ 145 (414)
T PRK12891 132 SRFAPSMVGSGVFF 145 (414)
T ss_pred CcCCcccccHHHHh
Confidence 5 57998775
No 12
>TIGR01879 hydantase amidase, hydantoinase/carbamoylase family. Enzymes in this subfamily hydrolize the amide bonds of compounds containing carbamoyl groups or hydantoin rings. These enzymes are members of the broader family of amidases represented by pfam01546.
Probab=99.38 E-value=4.9e-12 Score=144.74 Aligned_cols=126 Identities=21% Similarity=0.180 Sum_probs=105.6
Q ss_pred HHHHHHHHHHhcCC-------CCCCCHHHHHHHHHHHHHHHhhccccCCceeEEEEEEeccCCccccccccccccccccc
Q 002689 88 EAIKHVKALTELGP-------HPVGSDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYS 160 (892)
Q Consensus 88 rA~~~L~~L~~igp-------r~vGS~~~~~a~~yL~~~l~~ig~~a~~~~~ve~d~~~~~~g~~~~~g~~~~~~~~~y~ 160 (892)
|.+++|..+.++|. |...|+++.++++||.++|++.|. +++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~g~~r~~~~~~e~~~~~~l~~~~~~~G~------~~~~~------------------------ 51 (401)
T TIGR01879 2 RLWETLMWLGEVGADPAGGMTRLALSPEDREAQDLFKKRMRAAGL------EVRFD------------------------ 51 (401)
T ss_pred hHHHHHHHHhcccCCCCCceEeCCCCHHHHHHHHHHHHHHHHCCC------EEEEe------------------------
Confidence 67889999998854 334477888999999999999983 44432
Q ss_pred ccceEEEEEcCCCCCcCCCCEEEEeeecccccCCCCCCCchhHHHHHHHHHHHHHhcCCCCCceEEEEEeCCcCC-----
Q 002689 161 DLNHIVLRIQPKYASEAAENAILVSSHIDTVFAAEGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEEE----- 235 (892)
Q Consensus 161 ~~~NVi~~i~g~~~~~~~~~~VLl~AH~DSv~~spGA~Dd~sgva~mLE~ar~L~~~~~~p~~~I~flf~~aEE~----- 235 (892)
...||+++++|. ..+.+.|++++|+||||. .|..|+..|++++|++++.|++.+.+++++|.|+++.+||.
T Consensus 52 ~~~nl~a~~~g~---~~~~~~l~~~~H~DtV~~-gg~~dg~~gvaa~l~a~~~l~~~g~~~~~~i~~~~~~dEE~~~f~~ 127 (401)
T TIGR01879 52 EVGNLIGRKEGT---EPPLEVVLSGSHIDTVVN-GGNFDGQLGVLAGIEVVDALKEAYVVPLHPIEVVAFTEEEGSRFPY 127 (401)
T ss_pred cCCcEEEEecCC---CCCCCEEEEecccccCCC-CCccCCHHHHHHHHHHHHHHHHcCCCCCCCeEEEEEeCCcCcCccc
Confidence 236999999875 223589999999999985 47899999999999999999999888999999999999997
Q ss_pred CCCChHHHHhcC
Q 002689 236 GLNGAHSFVTQH 247 (892)
Q Consensus 236 gl~GS~~fv~~h 247 (892)
++.||+.++.+.
T Consensus 128 ~~~Gs~~~~~~~ 139 (401)
T TIGR01879 128 GMWGSRNMVGLA 139 (401)
T ss_pred ccccHHHHhccc
Confidence 789999998544
No 13
>PRK13590 putative bifunctional OHCU decarboxylase/allantoate amidohydrolase; Provisional
Probab=99.37 E-value=4.3e-12 Score=152.03 Aligned_cols=128 Identities=16% Similarity=0.131 Sum_probs=107.8
Q ss_pred CHHHHHHHHHHHHhcCC----------CCCCCHHHHHHHHHHHHHHHhhccccCCceeEEEEEEeccCCccccccccccc
Q 002689 85 SEFEAIKHVKALTELGP----------HPVGSDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMG 154 (892)
Q Consensus 85 s~erA~~~L~~L~~igp----------r~vGS~~~~~a~~yL~~~l~~ig~~a~~~~~ve~d~~~~~~g~~~~~g~~~~~ 154 (892)
-.+|.++++.+|++|+. |...|++..++++|+.++++++|.+ ++++|
T Consensus 179 ~~~r~~~~~~~l~~~~~~~~~~~~g~~R~~~s~~~~~~~~~l~~~~~~~Gl~-----~v~~D------------------ 235 (591)
T PRK13590 179 LGNDVWDWAERLAAHSDPGYAEKGQLTVTYLTDAHRACAQQISHWMRDCGFD-----EVHID------------------ 235 (591)
T ss_pred HHHHHHHHHHHHhcccCCCCCCCCceeeeeCCHHHHHHHHHHHHHHHHcCCC-----eeeEC------------------
Confidence 46899999999999853 2334889999999999999999820 34443
Q ss_pred ccccccccceEEEEEcCCCCCcCCCCEEEEeeecccccCCCCCCCchhHHHHHHHHHHHHHhcCCCCCceEEEEEeCCcC
Q 002689 155 RTLIYSDLNHIVLRIQPKYASEAAENAILVSSHIDTVFAAEGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEE 234 (892)
Q Consensus 155 ~~~~y~~~~NVi~~i~g~~~~~~~~~~VLl~AH~DSv~~spGA~Dd~sgva~mLE~ar~L~~~~~~p~~~I~flf~~aEE 234 (892)
...||+++++|+ .+..+.|++++|+|||+. .|..|+..||+++||++|.|.+.+.+++++|.|++|.+||
T Consensus 236 ------~~GNl~~~~~g~---~~~~~~v~~gsHlDTV~~-gG~~DG~~Gv~a~lea~~~l~~~~~~~~~~i~vv~~~~EE 305 (591)
T PRK13590 236 ------AVGNVVGRYKGS---TPQAKRLLTGSHYDTVRN-GGKYDGRLGIFVPMACVRELHRQGRRLPFGLEVVGFAEEE 305 (591)
T ss_pred ------CCCCEEEEecCC---CCCCCeEEEecccccCCC-CCCcccHHHHHHHHHHHHHHHHcCCCCCCCeEEEEecCCc
Confidence 458999999986 234578999999999985 6889999999999999999999988889999999999999
Q ss_pred C-----CCCChHHHHh
Q 002689 235 E-----GLNGAHSFVT 245 (892)
Q Consensus 235 ~-----gl~GS~~fv~ 245 (892)
. ++.||+.+..
T Consensus 306 g~rF~~~~~GS~~~~G 321 (591)
T PRK13590 306 GQRYKATFLGSGALIG 321 (591)
T ss_pred cccCCccccchHHHhC
Confidence 7 5899998764
No 14
>PRK09290 allantoate amidohydrolase; Reviewed
Probab=99.36 E-value=8.1e-12 Score=143.39 Aligned_cols=130 Identities=20% Similarity=0.192 Sum_probs=107.6
Q ss_pred CCHHHHHHHHHHHHhcCC-------CCCCCHHHHHHHHHHHHHHHhhccccCCceeEEEEEEeccCCccccccccccccc
Q 002689 84 FSEFEAIKHVKALTELGP-------HPVGSDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRT 156 (892)
Q Consensus 84 fs~erA~~~L~~L~~igp-------r~vGS~~~~~a~~yL~~~l~~ig~~a~~~~~ve~d~~~~~~g~~~~~g~~~~~~~ 156 (892)
.+.+++++++++|++||+ |+..|.++.++.+||.++|+++|. +++.+
T Consensus 4 ~~~~~~~~~~~~l~~~~~~~~~g~~~~s~s~~e~~~a~~l~~~l~~~g~------~~~~~-------------------- 57 (413)
T PRK09290 4 IDAERLWARLDELAKIGATPDGGVTRLALSPEDLQARDLFAEWMEAAGL------TVRVD-------------------- 57 (413)
T ss_pred cCHHHHHHHHHHHhcccCCCCCceeeccCCHHHHHHHHHHHHHHHHcCC------EEEEc--------------------
Confidence 467999999999999965 556777778999999999999983 33331
Q ss_pred ccccccceEEEEEcCCCCCcCCCCEEEEeeecccccCCCCCCCchhHHHHHHHHHHHHHhcCCCCCceEEEEEeCCcCC-
Q 002689 157 LIYSDLNHIVLRIQPKYASEAAENAILVSSHIDTVFAAEGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEEE- 235 (892)
Q Consensus 157 ~~y~~~~NVi~~i~g~~~~~~~~~~VLl~AH~DSv~~spGA~Dd~sgva~mLE~ar~L~~~~~~p~~~I~flf~~aEE~- 235 (892)
...|++++++|. ..+.+.|++++|+|+||. .|..|++.|+|+|+++++.|.+.+.+++++|+|+++.+||.
T Consensus 58 ----~~~nl~a~~~g~---~~~~~~l~l~gH~DtVp~-~g~~d~k~g~aa~l~a~~~l~~~~~~~~~~i~~~~~~dEE~g 129 (413)
T PRK09290 58 ----AVGNLFGRLEGR---DPDAPAVLTGSHLDTVPN-GGRFDGPLGVLAGLEAVRTLNERGIRPRRPIEVVAFTNEEGS 129 (413)
T ss_pred ----CCCcEEEEecCC---CCCCCEEEEecCccCCCC-CCCcCCHHHHHHHHHHHHHHHHcCCCCCCCeEEEEEcCCccc
Confidence 236999999764 123578999999999985 47789999999999999999988878889999999999998
Q ss_pred ----CCCChHHHHhcC
Q 002689 236 ----GLNGAHSFVTQH 247 (892)
Q Consensus 236 ----gl~GS~~fv~~h 247 (892)
|+.|++.++.++
T Consensus 130 ~~g~~~~G~~~~~~~~ 145 (413)
T PRK09290 130 RFGPAMLGSRVFTGAL 145 (413)
T ss_pred cccCccccHHHHHccc
Confidence 578999887554
No 15
>PRK13799 unknown domain/N-carbamoyl-L-amino acid hydrolase fusion protein; Provisional
Probab=99.36 E-value=4.7e-12 Score=151.63 Aligned_cols=127 Identities=15% Similarity=0.170 Sum_probs=111.9
Q ss_pred CHHHHHHHHHHHHhcC-----C-----CCCCCHHHHHHHHHHHHHHHhhccccCCcee-EEEEEEeccCCcccccccccc
Q 002689 85 SEFEAIKHVKALTELG-----P-----HPVGSDALDRALQYVFAAAQKIKETKHWEVD-VEVDFFHAKSGANRLVSGAFM 153 (892)
Q Consensus 85 s~erA~~~L~~L~~ig-----p-----r~vGS~~~~~a~~yL~~~l~~ig~~a~~~~~-ve~d~~~~~~g~~~~~g~~~~ 153 (892)
..+|.+++|.+|++|| + |...|++..++++|+.+++++.|. + +++|
T Consensus 179 ~~~r~~~~l~~l~~~~~~~~~~~~g~~R~~~s~~~~~~~~~~~~~~~~~Gl------~~v~~D----------------- 235 (591)
T PRK13799 179 IGADVMDWAEDIAAHSDPGYADEGALTCTYLSDAHRACANQISDWMRDAGF------DEVEID----------------- 235 (591)
T ss_pred HHHHHHHHHHHHHhccCCCCCCCCceEeeeCCHHHHHHHHHHHHHHHHcCC------CeEeEC-----------------
Confidence 5789999999999996 1 556788999999999999999983 4 5554
Q ss_pred cccccccccceEEEEEcCCCCCcCCCCEEEEeeecccccCCCCCCCchhHHHHHHHHHHHHHhcCCCCCceEEEEEeCCc
Q 002689 154 GRTLIYSDLNHIVLRIQPKYASEAAENAILVSSHIDTVFAAEGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGE 233 (892)
Q Consensus 154 ~~~~~y~~~~NVi~~i~g~~~~~~~~~~VLl~AH~DSv~~spGA~Dd~sgva~mLE~ar~L~~~~~~p~~~I~flf~~aE 233 (892)
...||+++++|+ ++..+.|++++|+|||+ ..|.-|+..||+++||++|.|.+.+.+++++|.++.|.+|
T Consensus 236 -------~~gNv~~~~~g~---~~~~p~v~~gSHlDTV~-~gG~~DG~~Gv~a~l~~~~~l~~~~~~~~~~i~vi~~~~E 304 (591)
T PRK13799 236 -------AVGNVVGRYKAA---DDDAKTLITGSHYDTVR-NGGKYDGREGIFLAIACVKELHEQGERLPFHFEVIAFAEE 304 (591)
T ss_pred -------CCCCEEEEcCCC---CCCCCeEEEeccccccC-CCCccccHHHHHHHHHHHHHHHHcCCCCCCCeEEEEecCC
Confidence 458999999886 24568999999999998 4889999999999999999999999999999999999999
Q ss_pred CC-----CCCChHHHHh
Q 002689 234 EE-----GLNGAHSFVT 245 (892)
Q Consensus 234 E~-----gl~GS~~fv~ 245 (892)
|. ++.||+.+..
T Consensus 305 Eg~rF~~~~~GS~~~~G 321 (591)
T PRK13799 305 EGQRFKATFLGSGALIG 321 (591)
T ss_pred CccCCCccccchHHHhC
Confidence 97 8999999974
No 16
>PRK08596 acetylornithine deacetylase; Validated
Probab=99.32 E-value=3e-11 Score=139.07 Aligned_cols=144 Identities=17% Similarity=0.182 Sum_probs=109.9
Q ss_pred HHHHHHHHHHHhcCCCCCCC-HHHHHHHHHHHHHHHhhccccCCceeEEEEEEeccCCcccccccccccccccccccceE
Q 002689 87 FEAIKHVKALTELGPHPVGS-DALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDLNHI 165 (892)
Q Consensus 87 erA~~~L~~L~~igpr~vGS-~~~~~a~~yL~~~l~~ig~~a~~~~~ve~d~~~~~~g~~~~~g~~~~~~~~~y~~~~NV 165 (892)
+++.+.|++|.+|. -+.+. .+++++.+||.++|+++|. +++.+ ... .+..||
T Consensus 13 ~~~~~~l~~Lv~i~-S~s~~~~~e~~~a~~l~~~l~~~G~------~~~~~--~~~------------------~~~~nv 65 (421)
T PRK08596 13 DELLELLKTLVRFE-TPAPPARNTNEAQEFIAEFLRKLGF------SVDKW--DVY------------------PNDPNV 65 (421)
T ss_pred HHHHHHHHHHhcCC-CCCCCchhHHHHHHHHHHHHHHCCC------eEEEE--Ecc------------------CCCceE
Confidence 67889999999972 22222 2445789999999999983 33332 110 134799
Q ss_pred EEEEcCCCCCcCCCCEEEEeeecccccC---------------------CCCCCCchhHHHHHHHHHHHHHhcCCCCCce
Q 002689 166 VLRIQPKYASEAAENAILVSSHIDTVFA---------------------AEGAGDCSSCVAVMLELARAMSQWAHGFKNA 224 (892)
Q Consensus 166 i~~i~g~~~~~~~~~~VLl~AH~DSv~~---------------------spGA~Dd~sgva~mLE~ar~L~~~~~~p~~~ 224 (892)
+++++|+. ....+.|++++|+|+||. ++|+.|+++|++++|++++.|.+.+..++.+
T Consensus 66 ia~~~g~~--~~~~~~lll~~H~DtVp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kgg~a~~l~a~~~l~~~~~~~~~~ 143 (421)
T PRK08596 66 VGVKKGTE--SDAYKSLIINGHMDVAEVSADEAWETNPFEPTIKDGWLYGRGAADMKGGLAGALFAIQLLHEAGIELPGD 143 (421)
T ss_pred EEEecCCC--CCCCcEEEEeccccccCCCCccccccCCCCcEEECCEEEeccccccchHHHHHHHHHHHHHHcCCCCCCc
Confidence 99998751 112357999999999874 2899999999999999999999887778899
Q ss_pred EEEEEeCCcCCCCCChHHHHhcCCccCCceEEEEeecc
Q 002689 225 VIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAIDLEAM 262 (892)
Q Consensus 225 I~flf~~aEE~gl~GS~~fv~~h~~~~~v~a~INLD~~ 262 (892)
|.|+|..+||.|..|++.++++.. ....+|+.|..
T Consensus 144 v~~~~~~dEE~g~~G~~~~~~~~~---~~d~~i~~ep~ 178 (421)
T PRK08596 144 LIFQSVIGEEVGEAGTLQCCERGY---DADFAVVVDTS 178 (421)
T ss_pred EEEEEEeccccCCcCHHHHHhcCC---CCCEEEECCCC
Confidence 999999999999999999996543 34677777753
No 17
>PRK12892 allantoate amidohydrolase; Reviewed
Probab=99.32 E-value=2.1e-11 Score=139.65 Aligned_cols=129 Identities=22% Similarity=0.272 Sum_probs=106.5
Q ss_pred CCHHHHHHHHHHHHhcCC------CCCCCHHHHHHHHHHHHHHHhhccccCCceeEEEEEEeccCCcccccccccccccc
Q 002689 84 FSEFEAIKHVKALTELGP------HPVGSDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTL 157 (892)
Q Consensus 84 fs~erA~~~L~~L~~igp------r~vGS~~~~~a~~yL~~~l~~ig~~a~~~~~ve~d~~~~~~g~~~~~g~~~~~~~~ 157 (892)
.+.+|+++.+++|++|+. |+..+.++.++++||.++|+++|. +++.+
T Consensus 7 ~~~~~~~~~~~~~~~~~s~~~g~~~~s~~~~e~~~~~~l~~~l~~~G~------~~~~~--------------------- 59 (412)
T PRK12892 7 IDGQRVLDDLMELAAIGAAKTGVHRPTYSDAHVAARRRLAAWCEAAGL------AVRID--------------------- 59 (412)
T ss_pred ccHHHHHHHHHHHHccCCCCCCeeeCCCCHHHHHHHHHHHHHHHHcCC------EEEEc---------------------
Confidence 467899999999999864 344566777999999999999983 34332
Q ss_pred cccccceEEEEEcCCCCCcCCCCEEEEeeecccccCCCCCCCchhHHHHHHHHHHHHHhcCCCCCceEEEEEeCCcCC--
Q 002689 158 IYSDLNHIVLRIQPKYASEAAENAILVSSHIDTVFAAEGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEEE-- 235 (892)
Q Consensus 158 ~y~~~~NVi~~i~g~~~~~~~~~~VLl~AH~DSv~~spGA~Dd~sgva~mLE~ar~L~~~~~~p~~~I~flf~~aEE~-- 235 (892)
+..|++++++|+ .+.+.|++++|+||||. .|-.|+..|+|++|++++.|.+.+.+++++|.|+++.+||.
T Consensus 60 ---~~~nl~a~~~g~----~~~~~l~l~gH~DtVp~-~g~~dg~~Gvaa~l~a~~~l~~~~~~~~~~i~~~~~~dEE~~~ 131 (412)
T PRK12892 60 ---GIGNVFGRLPGP----GPGPALLVGSHLDSQNL-GGRYDGALGVVAGLEAARALNEHGIATRHPLDVVAWCDEEGSR 131 (412)
T ss_pred ---CCCcEEEEecCC----CCCCeEEEEccccCCCC-CCcccchHHHHHHHHHHHHHHHcCCCCCCCeEEEEecCccccc
Confidence 235999999875 23478999999999985 46789999999999999999998888999999999999998
Q ss_pred ---CCCChHHHHhcC
Q 002689 236 ---GLNGAHSFVTQH 247 (892)
Q Consensus 236 ---gl~GS~~fv~~h 247 (892)
++.||+.++.++
T Consensus 132 ~~~~~~Gs~~~~~~~ 146 (412)
T PRK12892 132 FTPGFLGSRAYAGRL 146 (412)
T ss_pred ccCccccHHHHHcCC
Confidence 578999998543
No 18
>PRK06133 glutamate carboxypeptidase; Reviewed
Probab=99.31 E-value=4.3e-11 Score=137.44 Aligned_cols=145 Identities=20% Similarity=0.283 Sum_probs=110.9
Q ss_pred CHHHHHHHHHHHHhcCCCCCCCH-HHHHHHHHHHHHHHhhccccCCceeEEEEEEeccCCcccccccccccccccccccc
Q 002689 85 SEFEAIKHVKALTELGPHPVGSD-ALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDLN 163 (892)
Q Consensus 85 s~erA~~~L~~L~~igpr~vGS~-~~~~a~~yL~~~l~~ig~~a~~~~~ve~d~~~~~~g~~~~~g~~~~~~~~~y~~~~ 163 (892)
..+++.+.|++|.+| |-..+.+ ++.++.+||.++|+++|. +++.+. ... ....
T Consensus 35 ~~~~~~~~l~~lv~i-~S~s~~~~~~~~~~~~l~~~L~~~G~------~v~~~~--~~~-----------------~~~~ 88 (410)
T PRK06133 35 EQPAYLDTLKELVSI-ESGSGDAEGLKQVAALLAERLKALGA------KVERAP--TPP-----------------SAGD 88 (410)
T ss_pred hHHHHHHHHHHHHcC-CCCCCCHHHHHHHHHHHHHHHHhCCC------eEEEEc--cCC-----------------CCCC
Confidence 345788899999998 3333332 345899999999999983 343321 100 0246
Q ss_pred eEEEEEcCCCCCcCCCCEEEEeeecccccC-----------------CCCCCCchhHHHHHHHHHHHHHhcCCCCCceEE
Q 002689 164 HIVLRIQPKYASEAAENAILVSSHIDTVFA-----------------AEGAGDCSSCVAVMLELARAMSQWAHGFKNAVI 226 (892)
Q Consensus 164 NVi~~i~g~~~~~~~~~~VLl~AH~DSv~~-----------------spGA~Dd~sgva~mLE~ar~L~~~~~~p~~~I~ 226 (892)
|++++++|. +.+.|++.+|+|+||. ++|+.|+++|++++|++++.|.+.+.+++.+|+
T Consensus 89 ~lia~~~g~-----~~~~ill~~H~D~Vp~~~~w~~~Pf~~~~~~iyGrG~~D~kgg~a~~l~a~~~l~~~~~~~~~~i~ 163 (410)
T PRK06133 89 MVVATFKGT-----GKRRIMLIAHMDTVYLPGMLAKQPFRIDGDRAYGPGIADDKGGVAVILHALKILQQLGFKDYGTLT 163 (410)
T ss_pred eEEEEECCC-----CCceEEEEeecCccCCCCccCCCCEEEECCEEECCccccchHHHHHHHHHHHHHHHcCCCCCCCEE
Confidence 999999764 2467999999999984 379999999999999999999987767788999
Q ss_pred EEEeCCcCCCCCChHHHHhcCCccCCceEEEEeecc
Q 002689 227 FLFNTGEEEGLNGAHSFVTQHPWSTTIRVAIDLEAM 262 (892)
Q Consensus 227 flf~~aEE~gl~GS~~fv~~h~~~~~v~a~INLD~~ 262 (892)
|+|..+||.|..|++.++++.. .+...+|++|..
T Consensus 164 ~~~~~dEE~g~~G~~~~~~~~~--~~~d~~i~~ep~ 197 (410)
T PRK06133 164 VLFNPDEETGSPGSRELIAELA--AQHDVVFSCEPG 197 (410)
T ss_pred EEEECCcccCCccHHHHHHHHh--ccCCEEEEeCCC
Confidence 9999999999899999996643 245677887743
No 19
>PRK12893 allantoate amidohydrolase; Reviewed
Probab=99.30 E-value=2.6e-11 Score=138.97 Aligned_cols=130 Identities=19% Similarity=0.192 Sum_probs=106.3
Q ss_pred CCHHHHHHHHHHHHhcCC-------CCCCCHHHHHHHHHHHHHHHhhccccCCceeEEEEEEeccCCccccccccccccc
Q 002689 84 FSEFEAIKHVKALTELGP-------HPVGSDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRT 156 (892)
Q Consensus 84 fs~erA~~~L~~L~~igp-------r~vGS~~~~~a~~yL~~~l~~ig~~a~~~~~ve~d~~~~~~g~~~~~g~~~~~~~ 156 (892)
.+.++++++|++|++|.. |..+|.++.++.+||.++|+++|. +++++
T Consensus 7 ~~~~~~~~~l~~l~~i~s~~~~~~~~~~~s~~e~~~~~~l~~~l~~~G~------~~~~~-------------------- 60 (412)
T PRK12893 7 INGERLWDSLMALARIGATPGGGVTRLALTDEDREARDLLAQWMEEAGL------TVSVD-------------------- 60 (412)
T ss_pred cCHHHHHHHHHHHhcccCCCCCcEEeccCCHHHHHHHHHHHHHHHHcCC------EEEEc--------------------
Confidence 457899999999999862 334576777999999999999983 33331
Q ss_pred ccccccceEEEEEcCCCCCcCCCCEEEEeeecccccCCCCCCCchhHHHHHHHHHHHHHhcCCCCCceEEEEEeCCcCCC
Q 002689 157 LIYSDLNHIVLRIQPKYASEAAENAILVSSHIDTVFAAEGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEEEG 236 (892)
Q Consensus 157 ~~y~~~~NVi~~i~g~~~~~~~~~~VLl~AH~DSv~~spGA~Dd~sgva~mLE~ar~L~~~~~~p~~~I~flf~~aEE~g 236 (892)
...|++++++|. ..+.+.|++++|+|+||. .|..|++.|+|++|++++.|.+.+.+++++|+|+|+.+||.|
T Consensus 61 ----~~~n~~a~~~g~---~~~~~~l~l~~H~DtVp~-~g~~dgk~gvaa~l~a~~~l~~~~~~~~~~v~~~~~~dEE~g 132 (412)
T PRK12893 61 ----AIGNLFGRRAGT---DPDAPPVLIGSHLDTQPT-GGRFDGALGVLAALEVVRTLNDAGIRTRRPIEVVSWTNEEGA 132 (412)
T ss_pred ----CCCcEEEEeCCC---CCCCCEEEEEecccCCCC-CCcccchhhHHHHHHHHHHHHHcCCCCCCCeEEEEEcccccc
Confidence 235999999875 123578999999999984 577899999999999999999988788999999999999985
Q ss_pred -----CCChHHHHhcC
Q 002689 237 -----LNGAHSFVTQH 247 (892)
Q Consensus 237 -----l~GS~~fv~~h 247 (892)
+.|+..+..++
T Consensus 133 ~~~~~~~G~~~~~~~~ 148 (412)
T PRK12893 133 RFAPAMLGSGVFTGAL 148 (412)
T ss_pred ccccccccHHHHhCcC
Confidence 88999888543
No 20
>PRK08588 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=99.30 E-value=2.9e-11 Score=136.79 Aligned_cols=140 Identities=19% Similarity=0.227 Sum_probs=107.9
Q ss_pred HHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhccccCCceeEEEEEEeccCCcccccccccccccccccccceE
Q 002689 86 EFEAIKHVKALTELGPHPVGSDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDLNHI 165 (892)
Q Consensus 86 ~erA~~~L~~L~~igpr~vGS~~~~~a~~yL~~~l~~ig~~a~~~~~ve~d~~~~~~g~~~~~g~~~~~~~~~y~~~~NV 165 (892)
++++.+.|++|.++ |-+ |.++.++++||.++|+++|. +++.+. .. + +..|+
T Consensus 1 ~~~~~~~l~~Lv~i-~s~--s~~e~~~~~~l~~~l~~~G~------~~~~~~--~~-------~-----------~~~~l 51 (377)
T PRK08588 1 EEEKIQILADIVKI-NSV--NDNEIEVANYLQDLFAKHGI------ESKIVK--VN-------D-----------GRANL 51 (377)
T ss_pred ChHHHHHHHHHhcC-CCC--CCcHHHHHHHHHHHHHHCCC------ceEEEe--cC-------C-----------CCceE
Confidence 36888999999997 222 33456899999999999983 333321 10 0 34799
Q ss_pred EEEEcCCCCCcCCCCEEEEeeecccccC---------------------CCCCCCchhHHHHHHHHHHHHHhcCCCCCce
Q 002689 166 VLRIQPKYASEAAENAILVSSHIDTVFA---------------------AEGAGDCSSCVAVMLELARAMSQWAHGFKNA 224 (892)
Q Consensus 166 i~~i~g~~~~~~~~~~VLl~AH~DSv~~---------------------spGA~Dd~sgva~mLE~ar~L~~~~~~p~~~ 224 (892)
++++ |. ..+.|++.+|+|+||. ++|+.|++.|++++|++++.|.+.+..++.+
T Consensus 52 ~a~~-g~-----~~~~il~~~H~DtVp~~~~~~w~~~Pf~~~~~~g~l~GrG~~D~Kgg~aa~l~a~~~l~~~~~~~~~~ 125 (377)
T PRK08588 52 VAEI-GS-----GSPVLALSGHMDVVAAGDVDKWTYDPFELTEKDGKLYGRGATDMKSGLAALVIAMIELKEQGQLLNGT 125 (377)
T ss_pred EEEe-CC-----CCceEEEEeeecccCCCCcccCcCCCCCeEEECCEEEecCcccccchHHHHHHHHHHHHHcCCCCCCc
Confidence 9998 42 1278999999999985 3789999999999999999999887778899
Q ss_pred EEEEEeCCcCCCCCChHHHHhcCCccCCceEEEEeec
Q 002689 225 VIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAIDLEA 261 (892)
Q Consensus 225 I~flf~~aEE~gl~GS~~fv~~h~~~~~v~a~INLD~ 261 (892)
|.|+|..+||.|..|++.++++ .+.++...+|..|.
T Consensus 126 i~l~~~~dEE~g~~G~~~~~~~-~~~~~~d~~i~~ep 161 (377)
T PRK08588 126 IRLLATAGEEVGELGAKQLTEK-GYADDLDALIIGEP 161 (377)
T ss_pred EEEEEEcccccCchhHHHHHhc-CccCCCCEEEEecC
Confidence 9999999999999999999954 33445556666664
No 21
>PRK07473 carboxypeptidase; Provisional
Probab=99.30 E-value=6.2e-11 Score=134.71 Aligned_cols=149 Identities=17% Similarity=0.190 Sum_probs=112.5
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCCHHH-HHHHHHHHHHHHhhccccCCceeEEEEEEeccCCccccccccccccccccccc
Q 002689 84 FSEFEAIKHVKALTELGPHPVGSDAL-DRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDL 162 (892)
Q Consensus 84 fs~erA~~~L~~L~~igpr~vGS~~~-~~a~~yL~~~l~~ig~~a~~~~~ve~d~~~~~~g~~~~~g~~~~~~~~~y~~~ 162 (892)
++.+++.+.|++|.+|.. +.+.+++ .++.+|+.++|+++|. +++.. .... + ..
T Consensus 8 ~~~~~~~~~l~~Lv~i~S-~s~~~~~~~~~~~~l~~~l~~~G~------~~~~~--~~~~------~-----------~~ 61 (376)
T PRK07473 8 FDSEAMLAGLRPWVECES-PTWDAAAVNRMLDLAARDMAIMGA------TIERI--PGRQ------G-----------FG 61 (376)
T ss_pred cCHHHHHHHHHHHhcCCC-CCCCHHHHHHHHHHHHHHHHHcCC------eEEEe--cCCC------C-----------CC
Confidence 568899999999999833 3344333 4788999999999983 33332 1100 0 12
Q ss_pred ceEEEEEcCCCCCcCCCCEEEEeeecccccC-----------------CCCCCCchhHHHHHHHHHHHHHhcCCCCCceE
Q 002689 163 NHIVLRIQPKYASEAAENAILVSSHIDTVFA-----------------AEGAGDCSSCVAVMLELARAMSQWAHGFKNAV 225 (892)
Q Consensus 163 ~NVi~~i~g~~~~~~~~~~VLl~AH~DSv~~-----------------spGA~Dd~sgva~mLE~ar~L~~~~~~p~~~I 225 (892)
.|+++++++. ....+.|++++|+|+|+. ++|+.|+++|+++||.+++.|.+.+.+++.+|
T Consensus 62 ~~~~~~~~~~---~~~~~~lll~gH~DtV~~~~~~~~~p~~~~~g~lyGrG~~D~Kgglaa~l~A~~~l~~~~~~~~~~v 138 (376)
T PRK07473 62 DCVRARFPHP---RQGEPGILIAGHMDTVHPVGTLEKLPWRREGNKCYGPGILDMKGGNYLALEAIRQLARAGITTPLPI 138 (376)
T ss_pred CeEEEEeCCC---CCCCCeEEEEecCCCCCCCCCccCCCeEEECCEEEcCchhhchHHHHHHHHHHHHHHHcCCCCCCCE
Confidence 5899998653 124578999999999952 48999999999999999999988776667789
Q ss_pred EEEEeCCcCCCCCChHHHHhcCCccCCceEEEEeeccc
Q 002689 226 IFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAIDLEAMG 263 (892)
Q Consensus 226 ~flf~~aEE~gl~GS~~fv~~h~~~~~v~a~INLD~~G 263 (892)
.|+|..+||.|..|++.+++++.. ...++|..|..+
T Consensus 139 ~~~~~~dEE~g~~g~~~~~~~~~~--~~d~~iv~ep~~ 174 (376)
T PRK07473 139 TVLFTPDEEVGTPSTRDLIEAEAA--RNKYVLVPEPGR 174 (376)
T ss_pred EEEEeCCcccCCccHHHHHHHhhc--cCCEEEEeCCCC
Confidence 999999999999999999965432 346778877653
No 22
>PRK07906 hypothetical protein; Provisional
Probab=99.27 E-value=3.2e-11 Score=138.88 Aligned_cols=130 Identities=24% Similarity=0.349 Sum_probs=100.1
Q ss_pred HHHHHHHHhcCCCCC---CCHHHHHHHHHHHHHHHhhccccCCceeEEEEEEeccCCcccccccccccccccccccceEE
Q 002689 90 IKHVKALTELGPHPV---GSDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDLNHIV 166 (892)
Q Consensus 90 ~~~L~~L~~igpr~v---GS~~~~~a~~yL~~~l~~ig~~a~~~~~ve~d~~~~~~g~~~~~g~~~~~~~~~y~~~~NVi 166 (892)
.+.|++|.+|..-.. ..+++.++++||.++++++|. +++.+ ... .+..|++
T Consensus 2 ~~ll~~Lv~i~S~s~~~~~~~~e~~~~~~l~~~l~~~G~------~~~~~--~~~------------------~~~~nv~ 55 (426)
T PRK07906 2 VDLCSELIRIDTTNTGDGTGKGEREAAEYVAEKLAEVGL------EPTYL--ESA------------------PGRANVV 55 (426)
T ss_pred hHHHHHHhcccccCCCCCCCchHHHHHHHHHHHHHhCCC------CeEEe--ecC------------------CCceEEE
Confidence 467888888732111 124566899999999999983 33332 110 0347999
Q ss_pred EEEcCCCCCcCCCCEEEEeeecccccC--------------------CCCCCCchhHHHHHHHHHHHHHhcCCCCCceEE
Q 002689 167 LRIQPKYASEAAENAILVSSHIDTVFA--------------------AEGAGDCSSCVAVMLELARAMSQWAHGFKNAVI 226 (892)
Q Consensus 167 ~~i~g~~~~~~~~~~VLl~AH~DSv~~--------------------spGA~Dd~sgva~mLE~ar~L~~~~~~p~~~I~ 226 (892)
++++|+ ++..+.|++++|+|+||. ++|+.|+++|++++|++++.|.+.+..++++|.
T Consensus 56 ~~~~g~---~~~~~~lll~~H~DtVp~~~~~W~~~Pf~~~~~dg~iyGrG~~D~Kg~~a~~l~a~~~l~~~~~~~~~~i~ 132 (426)
T PRK07906 56 ARLPGA---DPSRPALLVHGHLDVVPAEAADWSVHPFSGEIRDGYVWGRGAVDMKDMDAMMLAVVRHLARTGRRPPRDLV 132 (426)
T ss_pred EEEeCC---CCCCCcEEEEcccccCCCCcccCccCCCCceeeCCEEEecCccccchHHHHHHHHHHHHHHcCCCCCccEE
Confidence 999875 233468999999999985 389999999999999999999988878899999
Q ss_pred EEEeCCcCCC-CCChHHHHhcCC
Q 002689 227 FLFNTGEEEG-LNGAHSFVTQHP 248 (892)
Q Consensus 227 flf~~aEE~g-l~GS~~fv~~h~ 248 (892)
|+|+.+||.| ..|++.++++++
T Consensus 133 ~~~~~dEE~g~~~g~~~l~~~~~ 155 (426)
T PRK07906 133 FAFVADEEAGGTYGAHWLVDNHP 155 (426)
T ss_pred EEEecCcccchhhhHHHHHHHHH
Confidence 9999999986 469999986543
No 23
>TIGR01910 DapE-ArgE acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase. This group of sequences contains annotations for both acetylornithine deacetylase and succinyl-diaminopimelate desuccinylase, but does not contain any members with experimental characterization. Bacillus, Staphylococcus and Sulfolobus species contain multiple hits to this subfamily and each may have a separate activity. Determining which is which must await further laboratory research.
Probab=99.25 E-value=7.4e-11 Score=133.52 Aligned_cols=145 Identities=16% Similarity=0.183 Sum_probs=105.5
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhccccCCceeEEEEEEeccCCcccccccccccccccccccceEEEEEc
Q 002689 91 KHVKALTELGPHPVGSDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDLNHIVLRIQ 170 (892)
Q Consensus 91 ~~L~~L~~igpr~vGS~~~~~a~~yL~~~l~~ig~~a~~~~~ve~d~~~~~~g~~~~~g~~~~~~~~~y~~~~NVi~~i~ 170 (892)
+.|++|.++..-...+.++.++++||.++|+++|. +++.. ....+ . .....|+++.+.
T Consensus 2 ~~l~~lv~i~s~~~~~~~e~~~a~~l~~~l~~~G~------~~~~~--~~~~~-----------~---~~~~~~~~~~~~ 59 (375)
T TIGR01910 2 ELLKDLISIPSVNPPGGNEETIANYIKDLLREFGF------STDVI--EITDD-----------R---LKVLGKVVVKEP 59 (375)
T ss_pred hhHHhhhcCCCCCCCCcCHHHHHHHHHHHHHHCCC------ceEEE--ecCch-----------h---cccccceEEecc
Confidence 46778888622111344567899999999999983 33322 11000 0 002246788877
Q ss_pred CCCCCcCCCCEEEEeeecccccCC---------------------CCCCCchhHHHHHHHHHHHHHhcCCCCCceEEEEE
Q 002689 171 PKYASEAAENAILVSSHIDTVFAA---------------------EGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLF 229 (892)
Q Consensus 171 g~~~~~~~~~~VLl~AH~DSv~~s---------------------pGA~Dd~sgva~mLE~ar~L~~~~~~p~~~I~flf 229 (892)
|. ...+.|++.+|+|+||.. +|+.|+++|+|++|++++.|.+.+.+++++|.|+|
T Consensus 60 g~----~~~~~ill~~H~DtVp~~~~~~w~~~Pf~~~~~~g~i~grG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~ 135 (375)
T TIGR01910 60 GN----GNEKSLIFNGHYDVVPAGDLELWKTDPFKPVEKDGKLYGRGATDMKGGLVALLYALKAIREAGIKPNGNIILQS 135 (375)
T ss_pred CC----CCCCEEEEecccccccCCChhhCcCCCCCcEEECCEEEecCccccchHHHHHHHHHHHHHHcCCCCCccEEEEE
Confidence 64 235789999999999863 68999999999999999999987777889999999
Q ss_pred eCCcCCCCCChHHHHhcCCccCCceEEEEeecc
Q 002689 230 NTGEEEGLNGAHSFVTQHPWSTTIRVAIDLEAM 262 (892)
Q Consensus 230 ~~aEE~gl~GS~~fv~~h~~~~~v~a~INLD~~ 262 (892)
+.+||.|..|++.++++ ...++...+|..|..
T Consensus 136 ~~~EE~g~~G~~~~~~~-~~~~~~d~~i~~~~~ 167 (375)
T TIGR01910 136 VVDEESGEAGTLYLLQR-GYFKDADGVLIPEPS 167 (375)
T ss_pred EcCcccCchhHHHHHHc-CCCCCCCEEEECCCC
Confidence 99999999999999954 333345667777754
No 24
>PRK07338 hypothetical protein; Provisional
Probab=99.23 E-value=1.4e-10 Score=132.40 Aligned_cols=157 Identities=20% Similarity=0.264 Sum_probs=109.1
Q ss_pred HHHHHHHHHHHHhcCCCCCCC-HHHHHHHHHHHHHHHhhccccCCceeEEEEEEeccCCcccccccccccccccccccce
Q 002689 86 EFEAIKHVKALTELGPHPVGS-DALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDLNH 164 (892)
Q Consensus 86 ~erA~~~L~~L~~igpr~vGS-~~~~~a~~yL~~~l~~ig~~a~~~~~ve~d~~~~~~g~~~~~g~~~~~~~~~y~~~~N 164 (892)
.+++.+.|.+|.++. -..+. ++..++.+||.++|+++|. +++.. ...... .. ...+.........|
T Consensus 16 ~~~~~~~l~~lv~i~-S~s~~~~~~~~~~~~l~~~l~~~G~------~~~~~--~~~~~~--~~--~~~~~~~~~~~~~n 82 (402)
T PRK07338 16 QAPMLEQLIAWAAIN-SGSRNLDGLARMAELLADAFAALPG------EIELI--PLPPVE--VI--DADGRTLEQAHGPA 82 (402)
T ss_pred HHHHHHHHHHHHhcc-CCCCCHHHHHHHHHHHHHHHHhCCC------cEEEe--cCCccc--cc--cccccccccCcCCe
Confidence 467788899998873 22222 2345899999999999984 33322 110000 00 00001001123479
Q ss_pred EEEEEcCCCCCcCCCCEEEEeeecccccC-----------------CCCCCCchhHHHHHHHHHHHHHhcCCCCCceEEE
Q 002689 165 IVLRIQPKYASEAAENAILVSSHIDTVFA-----------------AEGAGDCSSCVAVMLELARAMSQWAHGFKNAVIF 227 (892)
Q Consensus 165 Vi~~i~g~~~~~~~~~~VLl~AH~DSv~~-----------------spGA~Dd~sgva~mLE~ar~L~~~~~~p~~~I~f 227 (892)
|+++++|. .++.|++++|+|+||. ++|+.|+++|++++|++++.|.+.+.+++.+|.|
T Consensus 83 l~a~~~~~-----~~~~lll~gH~DvVp~~~~Pf~~~~~~~~g~lyGrG~~DmKgg~aa~l~a~~~l~~~~~~~~~~i~~ 157 (402)
T PRK07338 83 LHVSVRPE-----APRQVLLTGHMDTVFPADHPFQTLSWLDDGTLNGPGVADMKGGIVVMLAALLAFERSPLADKLGYDV 157 (402)
T ss_pred EEEEECCC-----CCccEEEEeecCccCCCCCcccCCeEeeCCEEECCcHHhhhHHHHHHHHHHHHHHhcCCCCCCCEEE
Confidence 99999653 2245999999999974 3799999999999999999998877677789999
Q ss_pred EEeCCcCCCCCChHHHHhcCCccCCceEEEEeecc
Q 002689 228 LFNTGEEEGLNGAHSFVTQHPWSTTIRVAIDLEAM 262 (892)
Q Consensus 228 lf~~aEE~gl~GS~~fv~~h~~~~~v~a~INLD~~ 262 (892)
+|..+||.|..|++.++.++.. +..+++.+|..
T Consensus 158 ~~~~dEE~g~~g~~~~~~~~~~--~~~~~i~~ep~ 190 (402)
T PRK07338 158 LINPDEEIGSPASAPLLAELAR--GKHAALTYEPA 190 (402)
T ss_pred EEECCcccCChhhHHHHHHHhc--cCcEEEEecCC
Confidence 9999999999999999876542 34567777753
No 25
>PRK07907 hypothetical protein; Provisional
Probab=99.23 E-value=1.6e-10 Score=134.26 Aligned_cols=142 Identities=17% Similarity=0.187 Sum_probs=106.3
Q ss_pred HHHHHHHHHHHHhcCCCCCCC----HHHHHHHHHHHHHHHhhccccCCceeEEEEEEeccCCcccccccccccccccccc
Q 002689 86 EFEAIKHVKALTELGPHPVGS----DALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSD 161 (892)
Q Consensus 86 ~erA~~~L~~L~~igpr~vGS----~~~~~a~~yL~~~l~~ig~~a~~~~~ve~d~~~~~~g~~~~~g~~~~~~~~~y~~ 161 (892)
.+++.+.|++|.+|.. ..+. .+..++.+||.++|+++|. .+++.. .. .+
T Consensus 17 ~~~~~~ll~~LV~ipS-~s~~~~~~~~~~~~~~~l~~~l~~~g~-----~~~~~~--~~-------------------~~ 69 (449)
T PRK07907 17 LPRVRADLEELVRIPS-VAADPFRREEVARSAEWVADLLREAGF-----DDVRVV--SA-------------------DG 69 (449)
T ss_pred HHHHHHHHHHHhcCCC-CCCCccchhhHHHHHHHHHHHHHHcCC-----ceEEEE--ec-------------------CC
Confidence 4688999999999732 2221 2235789999999999982 022221 11 03
Q ss_pred cceEEEEEcCCCCCcCCCCEEEEeeecccccC---------------------CCCCCCchhHHHHHHHHHHHHHhcCCC
Q 002689 162 LNHIVLRIQPKYASEAAENAILVSSHIDTVFA---------------------AEGAGDCSSCVAVMLELARAMSQWAHG 220 (892)
Q Consensus 162 ~~NVi~~i~g~~~~~~~~~~VLl~AH~DSv~~---------------------spGA~Dd~sgva~mLE~ar~L~~~~~~ 220 (892)
..|++++++|+ ...+.|++++|+|+||. ++|+.|+++|+|++|.+++.| . .+
T Consensus 70 ~~nl~a~~~~~----~~~~~lll~gH~DvVp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kg~~aa~l~a~~~l-~--~~ 142 (449)
T PRK07907 70 APAVIGTRPAP----PGAPTVLLYAHHDVQPPGDPDAWDSPPFELTERDGRLYGRGAADDKGGIAMHLAALRAL-G--GD 142 (449)
T ss_pred CCEEEEEecCC----CCCCEEEEEcccCCCCCCCccccCCCCceeEEECCEEEECCccCCcHHHHHHHHHHHHh-c--cC
Confidence 47999999764 24578999999999985 279999999999999999999 2 35
Q ss_pred CCceEEEEEeCCcCCCCCChHHHHhcCCccCCceEEEEeec
Q 002689 221 FKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAIDLEA 261 (892)
Q Consensus 221 p~~~I~flf~~aEE~gl~GS~~fv~~h~~~~~v~a~INLD~ 261 (892)
++++|.|++.++||.|..|++.+++++....+..++|..|.
T Consensus 143 ~~~~i~~~~~~dEE~g~~g~~~~l~~~~~~~~~d~~iv~E~ 183 (449)
T PRK07907 143 LPVGVTVFVEGEEEMGSPSLERLLAEHPDLLAADVIVIADS 183 (449)
T ss_pred CCCcEEEEEEcCcccCCccHHHHHHhchHhhcCCEEEEecC
Confidence 67899999999999999999999977543334456676664
No 26
>TIGR01880 Ac-peptdase-euk N-acyl-L-amino-acid amidohydrolase. This model represents a family of eukaryotic N-acyl-L-amino-acid amidohydrolases active on fatty acid and acetyl amides of L-amino acids.
Probab=99.22 E-value=1.7e-10 Score=131.69 Aligned_cols=147 Identities=18% Similarity=0.244 Sum_probs=109.4
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhccccCCceeEEEEEEeccCCccccccccccccccccccc
Q 002689 83 GFSEFEAIKHVKALTELGPHPVGSDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDL 162 (892)
Q Consensus 83 ~fs~erA~~~L~~L~~igpr~vGS~~~~~a~~yL~~~l~~ig~~a~~~~~ve~d~~~~~~g~~~~~g~~~~~~~~~y~~~ 162 (892)
+.-.+++.+.|++|.+|.. +.+..+..++.+|+.++|+++|. +++. .... ...
T Consensus 5 ~~~~~~~~~~l~~lv~ipS-~~~~~~~~~~~~~l~~~l~~~G~------~~~~--~~~~------------------~g~ 57 (400)
T TIGR01880 5 KWEEDIAVTRFREYLRINT-VQPNPDYAACVDFLIKQADELGL------ARKT--IEFV------------------PGK 57 (400)
T ss_pred ccchHHHHHHHHHHhccCc-cCCCccHHHHHHHHHHHHHhCCC------ceeE--EEec------------------CCc
Confidence 4667899999999999832 22233346899999999999983 2222 1110 024
Q ss_pred ceEEEEEcCCCCCcCCCCEEEEeeecccccC---------------------CCCCCCchhHHHHHHHHHHHHHhcCCCC
Q 002689 163 NHIVLRIQPKYASEAAENAILVSSHIDTVFA---------------------AEGAGDCSSCVAVMLELARAMSQWAHGF 221 (892)
Q Consensus 163 ~NVi~~i~g~~~~~~~~~~VLl~AH~DSv~~---------------------spGA~Dd~sgva~mLE~ar~L~~~~~~p 221 (892)
.|++++++|+ ....+.|++++|+|+||. ++|+.|+++++|++|++++.|.+.+.++
T Consensus 58 ~~l~~~~~g~---~~~~~~i~l~~H~DvVp~~~~~W~~~Pf~~~~~~dg~iyGrG~~D~K~~~aa~l~a~~~l~~~~~~~ 134 (400)
T TIGR01880 58 PVVVLTWPGS---NPELPSILLNSHTDVVPVFREHWTHPPFSAFKDEDGNIYARGAQDMKCVGVQYLEAVRNLKASGFKF 134 (400)
T ss_pred eeEEEEEecC---CCCCCeEEEEcccccCCCCcccCccCCccceecCCCeEEEcccccccHHHHHHHHHHHHHHHcCCCC
Confidence 6999999774 122478999999999974 2789999999999999999999887778
Q ss_pred CceEEEEEeCCcCCCC-CChHHHHhcCCccCCceEEEEee
Q 002689 222 KNAVIFLFNTGEEEGL-NGAHSFVTQHPWSTTIRVAIDLE 260 (892)
Q Consensus 222 ~~~I~flf~~aEE~gl-~GS~~fv~~h~~~~~v~a~INLD 260 (892)
+++|.|+|..+||.|. .|++.++++.. .+.+++.+.+|
T Consensus 135 ~~~v~l~~~~dEE~g~~~G~~~~~~~~~-~~~~~~~~~~d 173 (400)
T TIGR01880 135 KRTIHISFVPDEEIGGHDGMEKFAKTDE-FKALNLGFALD 173 (400)
T ss_pred CceEEEEEeCCcccCcHhHHHHHHHhhh-ccCCceEEEEc
Confidence 8999999999999875 69999885432 22344555554
No 27
>PRK09104 hypothetical protein; Validated
Probab=99.21 E-value=1.6e-10 Score=134.76 Aligned_cols=146 Identities=17% Similarity=0.173 Sum_probs=109.8
Q ss_pred CHHHHHHHHHHHHhcCCCCCCCH----HHHHHHHHHHHHHHhhccccCCceeEEEEEEeccCCccccccccccccccccc
Q 002689 85 SEFEAIKHVKALTELGPHPVGSD----ALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYS 160 (892)
Q Consensus 85 s~erA~~~L~~L~~igpr~vGS~----~~~~a~~yL~~~l~~ig~~a~~~~~ve~d~~~~~~g~~~~~g~~~~~~~~~y~ 160 (892)
..+++.+.|++|.+|.. ..+.+ +..++.+||.++|+++|. +++.. .. .
T Consensus 15 ~~~~~~~~L~~lv~i~S-vs~~~~~~~~~~~~~~~l~~~l~~~G~------~v~~~--~~-------~------------ 66 (464)
T PRK09104 15 NLDASLERLFALLRIPS-ISTDPAYAADCRKAADWLVADLASLGF------EASVR--DT-------P------------ 66 (464)
T ss_pred hHHHHHHHHHHHhcCCC-CCCCccchHHHHHHHHHHHHHHHHCCC------eEEEE--ec-------C------------
Confidence 45788899999999732 22222 235789999999999983 33321 11 0
Q ss_pred ccceEEEEEcCCCCCcCCCCEEEEeeecccccC--------------------------CCCCCCchhHHHHHHHHHHHH
Q 002689 161 DLNHIVLRIQPKYASEAAENAILVSSHIDTVFA--------------------------AEGAGDCSSCVAVMLELARAM 214 (892)
Q Consensus 161 ~~~NVi~~i~g~~~~~~~~~~VLl~AH~DSv~~--------------------------spGA~Dd~sgva~mLE~ar~L 214 (892)
+..||++++.|. +...+.|++++|+|+||. ++|+.|++.|++++|++++.|
T Consensus 67 ~~~~l~a~~~g~---~~~~~~lll~gH~DvVp~~~~~~W~~~Pf~~~~~~~~~~~~~lyGRG~~D~Kg~laa~l~a~~~l 143 (464)
T PRK09104 67 GHPMVVAHHEGP---TGDAPHVLFYGHYDVQPVDPLDLWESPPFEPRIKETPDGRKVIVARGASDDKGQLMTFVEACRAW 143 (464)
T ss_pred CCCEEEEEecCC---CCCCCEEEEEecccCCCCCCcccCCCCCCcceEecCcCCcceEEEecccCCcHHHHHHHHHHHHH
Confidence 236999999874 234678999999999863 268899999999999999999
Q ss_pred HhcCCCCCceEEEEEeCCcCCCCCChHHHHhcCCccCCceEEEEeec
Q 002689 215 SQWAHGFKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAIDLEA 261 (892)
Q Consensus 215 ~~~~~~p~~~I~flf~~aEE~gl~GS~~fv~~h~~~~~v~a~INLD~ 261 (892)
.+.+..++.+|.|+|.++||.|..|...++.+.....+..++|+.|.
T Consensus 144 ~~~~~~~~~~i~~~~~~dEE~g~~g~~~~l~~~~~~~~~d~~iv~E~ 190 (464)
T PRK09104 144 KAVTGSLPVRVTILFEGEEESGSPSLVPFLEANAEELKADVALVCDT 190 (464)
T ss_pred HHhcCCCCCcEEEEEECccccCCccHHHHHHhhHHhcCCCEEEEeCC
Confidence 98765677899999999999999999999865432224577888773
No 28
>PRK13983 diaminopimelate aminotransferase; Provisional
Probab=99.20 E-value=3e-10 Score=129.22 Aligned_cols=150 Identities=18% Similarity=0.182 Sum_probs=106.8
Q ss_pred HHHHHHHHHHHhcCCCCCCC---HHHHHHHHHHHHHHHhhccccCCceeEEEEEEeccCCcccccccccccccccccccc
Q 002689 87 FEAIKHVKALTELGPHPVGS---DALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDLN 163 (892)
Q Consensus 87 erA~~~L~~L~~igpr~vGS---~~~~~a~~yL~~~l~~ig~~a~~~~~ve~d~~~~~~g~~~~~g~~~~~~~~~y~~~~ 163 (892)
+++.+.|++|.+|..- .+. .++.++.+||.++|+++|.+ .++.. ..... ........
T Consensus 5 ~~~~~~l~~lv~i~s~-s~~~~~~~e~~~~~~l~~~l~~~G~~-----~~~~~--~~~~~------------~~~~~~~~ 64 (400)
T PRK13983 5 DEMIELLSELIAIPAV-NPDFGGEGEKEKAEYLESLLKEYGFD-----EVERY--DAPDP------------RVIEGVRP 64 (400)
T ss_pred HHHHHHHHHHhCcCCC-CCCCCCccHHHHHHHHHHHHHHcCCc-----eEEEE--ecCCc------------ccccCCCc
Confidence 5788999999987321 111 23568999999999999831 03221 11000 00000158
Q ss_pred eEEEEEcCCCCCcCCCCEEEEeeecccccC---------------------CCCCCCchhHHHHHHHHHHHHHhcCCCCC
Q 002689 164 HIVLRIQPKYASEAAENAILVSSHIDTVFA---------------------AEGAGDCSSCVAVMLELARAMSQWAHGFK 222 (892)
Q Consensus 164 NVi~~i~g~~~~~~~~~~VLl~AH~DSv~~---------------------spGA~Dd~sgva~mLE~ar~L~~~~~~p~ 222 (892)
|++++++|. .+.+.|++++|+|+||. ++|+.|++.|++++|++++.|.+.+.+++
T Consensus 65 nl~~~~~g~----~~~~~lll~~H~Dtvp~~~~~~W~~~p~~~~~~~g~lyGrG~~D~K~g~~a~l~a~~~l~~~~~~~~ 140 (400)
T PRK13983 65 NIVAKIPGG----DGKRTLWIISHMDVVPPGDLSLWETDPFKPVVKDGKIYGRGSEDNGQGIVSSLLALKALMDLGIRPK 140 (400)
T ss_pred cEEEEecCC----CCCCeEEEEeeccccCCCCcccccCCCCcceeeCCEEEecCccCccchHHHHHHHHHHHHHhCCCCC
Confidence 999999874 23458999999999985 37899999999999999999998877888
Q ss_pred ceEEEEEeCCcCCCC-CChHHHHhcCCc-cCCceEEEEee
Q 002689 223 NAVIFLFNTGEEEGL-NGAHSFVTQHPW-STTIRVAIDLE 260 (892)
Q Consensus 223 ~~I~flf~~aEE~gl-~GS~~fv~~h~~-~~~v~a~INLD 260 (892)
.+|.|+|..+||.|. .|++.++++++. .....+++..|
T Consensus 141 ~~v~~~~~~dEE~g~~~g~~~~~~~~~~~~~~~d~~i~~~ 180 (400)
T PRK13983 141 YNLGLAFVSDEETGSKYGIQYLLKKHPELFKKDDLILVPD 180 (400)
T ss_pred CcEEEEEEeccccCCcccHHHHHhhcccccCCCCEEEEec
Confidence 999999999999887 489999866432 22344555444
No 29
>PRK06446 hypothetical protein; Provisional
Probab=99.19 E-value=2.3e-10 Score=132.44 Aligned_cols=128 Identities=16% Similarity=0.218 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHhcCCCCCCCH-HHHHHHHHHHHHHHhhccccCCceeEEEEEEeccCCcccccccccccccccccccceE
Q 002689 87 FEAIKHVKALTELGPHPVGSD-ALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDLNHI 165 (892)
Q Consensus 87 erA~~~L~~L~~igpr~vGS~-~~~~a~~yL~~~l~~ig~~a~~~~~ve~d~~~~~~g~~~~~g~~~~~~~~~y~~~~NV 165 (892)
+++.+.|++|.+|.. +.+.. +..++.+||.++|+++|. +++.. .. . +..|+
T Consensus 2 ~~~~~~l~eLV~i~S-~s~~~~~~~~~a~~l~~~l~~~G~------~ve~~--~~--------~-----------~~~~l 53 (436)
T PRK06446 2 DEELYTLIEFLKKPS-ISATGEGIEETANYLKDTMEKLGI------KANIE--RT--------K-----------GHPVV 53 (436)
T ss_pred hhHHHHHHHHhCCCC-CCCCcHhHHHHHHHHHHHHHHCCC------eEEEE--ec--------C-----------CCCEE
Confidence 478889999999832 22222 226899999999999983 34332 11 0 24799
Q ss_pred EEEEcCCCCCcCCCCEEEEeeecccccC---------------------CCCCCCchhHHHHHHHHHHHHHhcCCCCCce
Q 002689 166 VLRIQPKYASEAAENAILVSSHIDTVFA---------------------AEGAGDCSSCVAVMLELARAMSQWAHGFKNA 224 (892)
Q Consensus 166 i~~i~g~~~~~~~~~~VLl~AH~DSv~~---------------------spGA~Dd~sgva~mLE~ar~L~~~~~~p~~~ 224 (892)
++++++. +.+.|++++|+|+||. ++|+.|+++|+|++|.+++.+.+.+ .++.+
T Consensus 54 ia~~~~~-----~~~~vll~gH~DvVp~~~~~~W~~~Pf~~~~~dg~lyGRGa~DmKgglaa~l~A~~~l~~~~-~~~~~ 127 (436)
T PRK06446 54 YGEINVG-----AKKTLLIYNHYDVQPVDPLSEWKRDPFSATIENGRIYARGASDNKGTLMARLFAIKHLIDKH-KLNVN 127 (436)
T ss_pred EEEecCC-----CCCEEEEEecccCCCCCccccccCCCCceEEECCEEEEEeccCCcHHHHHHHHHHHHHHHcC-CCCCC
Confidence 9998532 3568999999999874 3899999999999999999887654 56789
Q ss_pred EEEEEeCCcCCCCCChHHHHhcCC
Q 002689 225 VIFLFNTGEEEGLNGAHSFVTQHP 248 (892)
Q Consensus 225 I~flf~~aEE~gl~GS~~fv~~h~ 248 (892)
|.|+|..+||.|..|++.++++++
T Consensus 128 i~~~~~~dEE~g~~g~~~~l~~~~ 151 (436)
T PRK06446 128 VKFLYEGEEEIGSPNLEDFIEKNK 151 (436)
T ss_pred EEEEEEcccccCCHhHHHHHHHHH
Confidence 999999999999999999997764
No 30
>PF05450 Nicastrin: Nicastrin; InterPro: IPR008710 Nicastrin and presenilin are two major components of the gamma-secretase complex, which executes the intramembrane proteolysis of type I integral membrane proteins such as the amyloid precursor protein (APP) and Notch. Nicastrin is synthesised in fibroblasts and neurons as an endoglycosidase-H-sensitive glycosylated precursor protein (immature nicastrin) and is then modified by complex glycosylation in the Golgi apparatus and by sialylation in the trans-Golgi network (mature nicastrin) [].; GO: 0016485 protein processing, 0016021 integral to membrane
Probab=99.19 E-value=3.6e-10 Score=120.26 Aligned_cols=167 Identities=22% Similarity=0.331 Sum_probs=115.4
Q ss_pred CEEEEeeeccccc----CCCCCCCchhHHHHHHHHHHHHHhc---CCCCCceEEEEEeCCcCCCCCChHHHHhcCC---c
Q 002689 180 NAILVSSHIDTVF----AAEGAGDCSSCVAVMLELARAMSQW---AHGFKNAVIFLFNTGEEEGLNGAHSFVTQHP---W 249 (892)
Q Consensus 180 ~~VLl~AH~DSv~----~spGA~Dd~sgva~mLE~ar~L~~~---~~~p~~~I~flf~~aEE~gl~GS~~fv~~h~---~ 249 (892)
+.|++.|.+||.. .+|||.+..+|++++|++++.|.+. ....+++|+|+|+.||..|..||+.|+.+.. +
T Consensus 1 ~iIlv~armDs~s~F~~~s~GA~s~~sglvaLLaaA~aL~~~~~~~~~~~knV~F~~F~GEs~dYiGS~R~vyDm~~~~f 80 (234)
T PF05450_consen 1 PIILVVARMDSFSFFHDLSPGADSSVSGLVALLAAAEALSKLLPDSSNLNKNVLFAFFNGESFDYIGSSRFVYDMQNGNF 80 (234)
T ss_pred CEEEEEecccchhcccCCCCCcccchHHHHHHHHHHHHHHHhhhccccccCcEEEEEecCccccccchHHHHHHHHcCcC
Confidence 5799999999964 3799999999999999999999874 2357899999999999999999999975531 1
Q ss_pred c-----------CCceEEEEeecccCCCCcceee--cCC--Ch---hHHHHHHHHccCCCC--cchhhhccccCCCCCCC
Q 002689 250 S-----------TTIRVAIDLEAMGIGGKSGLFQ--AGP--HP---WAVENFAAAAKYPSG--QVTAQDLFASGAITSAT 309 (892)
Q Consensus 250 ~-----------~~v~a~INLD~~G~gG~~~lfq--~g~--~~---~li~~~~~~a~~p~~--~~l~~~~f~~g~ips~T 309 (892)
. ++|..+|.++.+|..+...++. .++ ++ .+.+.+.+..+.+.. ....+..-...-+|..+
T Consensus 81 ~~~~~~~~~i~~~~I~~~IElgqvg~~~~~~l~~Hvd~~~~~~~~~~~~~~l~~~~~s~~~~~~~~~~~~~~~~~LPPsS 160 (234)
T PF05450_consen 81 PSDSLQFQPISLDNIDSVIELGQVGLSNSSGLYAHVDSPSNSSVANQVDEALDAAAKSLASSNIVIKKASSSNPPLPPSS 160 (234)
T ss_pred cccccccccccHHHCCEEEEeeccCCCCCCCEEEEecCCccchhhHHHHHHHHHHHHhccccccceeccccCCCCCCcch
Confidence 1 5899999999999866533332 122 11 233333332221211 11111111222466666
Q ss_pred ChHHHhhcCCCeEEEEEeeCC---CCCCCCCCcCcCCCCH
Q 002689 310 DFQVYKEVAGLSGLDFAYTDK---SAVYHTKNDKLDLLKP 346 (892)
Q Consensus 310 D~~~F~~~~GIPgld~a~~~~---~~~YHT~~Dt~d~id~ 346 (892)
=++..++..++||+-++-.+. ..+||+.+|+.++++.
T Consensus 161 ~~sFLr~~~~i~~vVLtd~~~~f~N~~y~S~~D~~~ni~~ 200 (234)
T PF05450_consen 161 LQSFLRKDPNIPGVVLTDHDSQFTNKYYNSILDDAENINF 200 (234)
T ss_pred HHHHHccCCCCCEEEecCCCcccccCCccCcccChhhhcC
Confidence 555555544899999886554 3479999999999876
No 31
>PRK04443 acetyl-lysine deacetylase; Provisional
Probab=99.19 E-value=2.2e-10 Score=128.64 Aligned_cols=133 Identities=22% Similarity=0.207 Sum_probs=102.6
Q ss_pred CHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhccccCCceeEEEEEEeccCCcccccccccccccccccccce
Q 002689 85 SEFEAIKHVKALTELGPHPVGSDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDLNH 164 (892)
Q Consensus 85 s~erA~~~L~~L~~igpr~vGS~~~~~a~~yL~~~l~~ig~~a~~~~~ve~d~~~~~~g~~~~~g~~~~~~~~~y~~~~N 164 (892)
-++++.+.|++|.+|. -+ |..+.++.+|+.+.|+++|. +++.+ ...|
T Consensus 4 ~~~~~~~~l~~Lv~i~-s~--s~~e~~~~~~l~~~l~~~G~------~~~~~------------------------~~~n 50 (348)
T PRK04443 4 SALEARELLKGLVEIP-SP--SGEEAAAAEFLVEFMESHGR------EAWVD------------------------EAGN 50 (348)
T ss_pred chHHHHHHHHHHHcCC-CC--CCChHHHHHHHHHHHHHcCC------EEEEc------------------------CCCc
Confidence 4578999999999972 22 33456899999999999983 33322 2358
Q ss_pred EEEEEcCCCCCcCCCCEEEEeeecccccC------------CCCCCCchhHHHHHHHHHHHHHhcCCCCCceEEEEEeCC
Q 002689 165 IVLRIQPKYASEAAENAILVSSHIDTVFA------------AEGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTG 232 (892)
Q Consensus 165 Vi~~i~g~~~~~~~~~~VLl~AH~DSv~~------------spGA~Dd~sgva~mLE~ar~L~~~~~~p~~~I~flf~~a 232 (892)
+++++.+ ..+.|++++|+|+||. ++|+.|+++|+|++|++++.| + .+++.+|.|++..+
T Consensus 51 ~i~~~~~------~~~~l~~~~H~DtVp~~~p~~~~~g~iyGrG~~D~Kg~~aa~l~A~~~l-~--~~~~~~i~~~~~~d 121 (348)
T PRK04443 51 ARGPAGD------GPPLVLLLGHIDTVPGDIPVRVEDGVLWGRGSVDAKGPLAAFAAAAARL-E--ALVRARVSFVGAVE 121 (348)
T ss_pred EEEEcCC------CCCEEEEEeeccccCCCCCcEeeCCeEEeecccccccHHHHHHHHHHHh-c--ccCCCCEEEEEEcc
Confidence 9998732 2368999999999974 489999999999999999999 3 46788999999999
Q ss_pred cCCCCCChHHHHhcCCccCCceEEEEeecc
Q 002689 233 EEEGLNGAHSFVTQHPWSTTIRVAIDLEAM 262 (892)
Q Consensus 233 EE~gl~GS~~fv~~h~~~~~v~a~INLD~~ 262 (892)
||.|..|...++.+. . ...++|+.|..
T Consensus 122 EE~g~~~~~~~l~~~-~--~~d~~iv~Ept 148 (348)
T PRK04443 122 EEAPSSGGARLVADR-E--RPDAVIIGEPS 148 (348)
T ss_pred cccCChhHHHHHHhc-c--CCCEEEEeCCC
Confidence 999888777766443 2 35677777743
No 32
>PRK08201 hypothetical protein; Provisional
Probab=99.19 E-value=3e-10 Score=132.17 Aligned_cols=147 Identities=17% Similarity=0.158 Sum_probs=107.4
Q ss_pred HHHHHHHHHHHHhcCCCCCC---CHHHHHHHHHHHHHHHhhccccCCceeEEEEEEeccCCccccccccccccccccccc
Q 002689 86 EFEAIKHVKALTELGPHPVG---SDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDL 162 (892)
Q Consensus 86 ~erA~~~L~~L~~igpr~vG---S~~~~~a~~yL~~~l~~ig~~a~~~~~ve~d~~~~~~g~~~~~g~~~~~~~~~y~~~ 162 (892)
.+++.+.|++|.+|..-... ..++.++.+||.+.|+++|.+ .++++. . + +.
T Consensus 13 ~~~~~~~l~~LV~i~Svs~~~~~~~~~~~~a~~l~~~l~~~G~~-----~~~~~~--~--------~-----------~~ 66 (456)
T PRK08201 13 REAHLEELKEFLRIPSISALSEHKEDVRKAAEWLAGALEKAGLE-----HVEIME--T--------A-----------GH 66 (456)
T ss_pred HHHHHHHHHHHhcCCCCCCCCcchHHHHHHHHHHHHHHHHcCCC-----eEEEEe--c--------C-----------CC
Confidence 46788999999987321111 123457899999999999831 123321 1 0 23
Q ss_pred ceEEEEEcCCCCCcCCCCEEEEeeecccccC---------------------CCCCCCchhHHHHHHHHHHHHHhcCCCC
Q 002689 163 NHIVLRIQPKYASEAAENAILVSSHIDTVFA---------------------AEGAGDCSSCVAVMLELARAMSQWAHGF 221 (892)
Q Consensus 163 ~NVi~~i~g~~~~~~~~~~VLl~AH~DSv~~---------------------spGA~Dd~sgva~mLE~ar~L~~~~~~p 221 (892)
.||++++.|. .+.+.|++++|+|+||. ++|+.|+++|+|++|++++.+.+.+..+
T Consensus 67 ~~l~a~~~~~----~~~~~lll~gH~DvVp~~~~~~W~~dPf~~~~~~g~lyGRG~~DmKgglaa~l~a~~~l~~~~~~~ 142 (456)
T PRK08201 67 PIVYADWLHA----PGKPTVLIYGHYDVQPVDPLNLWETPPFEPTIRDGKLYARGASDDKGQVFMHLKAVEALLKVEGTL 142 (456)
T ss_pred CEEEEEecCC----CCCCEEEEEeccCCcCCCchhcccCCCCceEeECCEEEEEecccCcHHHHHHHHHHHHHHHhcCCC
Confidence 6899988653 24578999999999874 3899999999999999999998765567
Q ss_pred CceEEEEEeCCcCCCCCChHHHHhcCCccCCceEEEEeecc
Q 002689 222 KNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAIDLEAM 262 (892)
Q Consensus 222 ~~~I~flf~~aEE~gl~GS~~fv~~h~~~~~v~a~INLD~~ 262 (892)
+.+|.|++..+||.|..|+..++++++..-+..++|+.|..
T Consensus 143 ~~~i~~~~~~dEE~g~~g~~~~l~~~~~~~~~d~~ii~e~~ 183 (456)
T PRK08201 143 PVNVKFCIEGEEEIGSPNLDSFVEEEKDKLAADVVLISDTT 183 (456)
T ss_pred CCCEEEEEEcccccCCccHHHHHHhhHHhccCCEEEEeCCC
Confidence 78999999999999999999998765321123566666643
No 33
>PRK13013 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=99.18 E-value=4e-10 Score=129.65 Aligned_cols=152 Identities=16% Similarity=0.109 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHHhcCCCCCC-C-HHHHHHHHHHHHHHHhhccccCCceeEEEEEEeccCCcccccccccccccccccccc
Q 002689 86 EFEAIKHVKALTELGPHPVG-S-DALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDLN 163 (892)
Q Consensus 86 ~erA~~~L~~L~~igpr~vG-S-~~~~~a~~yL~~~l~~ig~~a~~~~~ve~d~~~~~~g~~~~~g~~~~~~~~~y~~~~ 163 (892)
.+++.+.|++|.+|. .+. . .++.++.+||.++|+++|. +++........ + . ..+.+..
T Consensus 13 ~~~~~~~l~~Lv~i~--S~~~~g~~e~~~~~~l~~~l~~~G~------~~~~~~~~~~~------~-----~-~~~~~~~ 72 (427)
T PRK13013 13 RDDLVALTQDLIRIP--TLNPPGRAYREICEFLAARLAPRGF------EVELIRAEGAP------G-----D-SETYPRW 72 (427)
T ss_pred HHHHHHHHHHHhcCC--CcCCCCccHHHHHHHHHHHHHHCCC------ceEEEecCCCC------c-----c-cccCCcc
Confidence 367888899999872 222 1 2335899999999999983 33332110000 0 0 0112357
Q ss_pred eEEEEEcCCCCCcCCCCEEEEeeecccccC-------------------CCCCCCchhHHHHHHHHHHHHHhcCCCCCce
Q 002689 164 HIVLRIQPKYASEAAENAILVSSHIDTVFA-------------------AEGAGDCSSCVAVMLELARAMSQWAHGFKNA 224 (892)
Q Consensus 164 NVi~~i~g~~~~~~~~~~VLl~AH~DSv~~-------------------spGA~Dd~sgva~mLE~ar~L~~~~~~p~~~ 224 (892)
|++++++|+ .+++.|++.+|+|+||. ++|+.|+++|++++|.+++.|++.+.+++.+
T Consensus 73 nlia~~~g~----~~~~~i~l~gH~DvVp~~~~W~~~Pf~~~~~dg~iyGrGa~D~Kg~~aa~l~a~~~l~~~~~~~~~~ 148 (427)
T PRK13013 73 NLVARRQGA----RDGDCVHFNSHHDVVEVGHGWTRDPFGGEVKDGRIYGRGACDMKGGLAASIIAAEAFLAVYPDFAGS 148 (427)
T ss_pred eEEEEecCC----CCCCEEEEEeccccCCCCCCCcCCCCCceEECCEEEeccccccchHHHHHHHHHHHHHHhCCCCCcc
Confidence 999999774 24578999999999984 2799999999999999999999877778889
Q ss_pred EEEEEeCCcCCCCC-ChHHHHhcCCccC--CceEEEEeecc
Q 002689 225 VIFLFNTGEEEGLN-GAHSFVTQHPWST--TIRVAIDLEAM 262 (892)
Q Consensus 225 I~flf~~aEE~gl~-GS~~fv~~h~~~~--~v~a~INLD~~ 262 (892)
|.|+|..+||.|.. |.+.++ +....+ ++.++|..|..
T Consensus 149 v~~~~~~dEE~g~~~g~~~l~-~~~~~~~~~~d~~i~~ep~ 188 (427)
T PRK13013 149 IEISGTADEESGGFGGVAYLA-EQGRFSPDRVQHVIIPEPL 188 (427)
T ss_pred EEEEEEeccccCChhHHHHHH-hcCCccccCCCEEEEecCC
Confidence 99999999998766 445554 333222 45666766643
No 34
>TIGR01893 aa-his-dipept aminoacyl-histidine dipeptidase.
Probab=99.18 E-value=2.4e-10 Score=133.79 Aligned_cols=136 Identities=19% Similarity=0.328 Sum_probs=103.3
Q ss_pred HHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhccccCCceeEEEEEEeccCCcccccccccccccccccccceE
Q 002689 86 EFEAIKHVKALTELGPHPVGSDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDLNHI 165 (892)
Q Consensus 86 ~erA~~~L~~L~~igpr~vGS~~~~~a~~yL~~~l~~ig~~a~~~~~ve~d~~~~~~g~~~~~g~~~~~~~~~y~~~~NV 165 (892)
.+|+++.|++|++| |++ |.++.++++|+.++|+++|. +++.+ ...|+
T Consensus 3 ~~~~~~~l~~l~~i-~s~--s~~e~~~~~~l~~~l~~~G~------~~~~~------------------------~~~n~ 49 (477)
T TIGR01893 3 PSRVFKYFEEISKI-PRP--SKNEKEVSNFIVNWAKKLGL------EVKQD------------------------EVGNV 49 (477)
T ss_pred HHHHHHHHHHHHcC-CCC--CccHHHHHHHHHHHHHHcCC------eEEEe------------------------CCCeE
Confidence 47899999999998 455 55567899999999999982 34433 23699
Q ss_pred EEEEcCCCCCcCCCCEEEEeeecccccCC------------------------CCCC---CchhHHHHHHHHHHHHHhcC
Q 002689 166 VLRIQPKYASEAAENAILVSSHIDTVFAA------------------------EGAG---DCSSCVAVMLELARAMSQWA 218 (892)
Q Consensus 166 i~~i~g~~~~~~~~~~VLl~AH~DSv~~s------------------------pGA~---Dd~sgva~mLE~ar~L~~~~ 218 (892)
+++++|.. +....+.|++++|+|+|+.. +|+. |++.|++++|++++. .
T Consensus 50 ~~~~~~~~-g~~~~~~l~l~~HlDtV~~~~~~~~~~w~~~p~~~~~~~~~i~GrG~~lg~D~k~gva~~l~~~~~---~- 124 (477)
T TIGR01893 50 LIRKPATP-GYENHPPIVLQGHMDMVCEKNEDSLHDFEKDPIELIIDGDWLKARGTTLGADNGIGVAMGLAILED---N- 124 (477)
T ss_pred EEEEcCCC-CCCCCCeEEEEeeccccCCCCCCCCCCCCCCCeEEEEeCCEEEECCccccccccHHHHHHHHHHhc---C-
Confidence 99998742 11345789999999999842 5663 999999999999875 2
Q ss_pred CCCCceEEEEEeCCcCCCCCChHHHHhcCCccCCceEEEEeecc
Q 002689 219 HGFKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAIDLEAM 262 (892)
Q Consensus 219 ~~p~~~I~flf~~aEE~gl~GS~~fv~~h~~~~~v~a~INLD~~ 262 (892)
..++++|.++|+.+||.|+.||+.+..+. . ....++|.|..
T Consensus 125 ~~~~~~i~~~~~~dEE~g~~Gs~~l~~~~-~--~~~~~~~~d~~ 165 (477)
T TIGR01893 125 NLKHPPLELLFTVDEETGMDGALGLDENW-L--SGKILINIDSE 165 (477)
T ss_pred CCCCCCEEEEEEeccccCchhhhhcChhh-c--CCcEEEEecCC
Confidence 23566999999999999999999997432 2 23567777753
No 35
>KOG2275 consensus Aminoacylase ACY1 and related metalloexopeptidases [Amino acid transport and metabolism]
Probab=99.17 E-value=3e-10 Score=126.53 Aligned_cols=123 Identities=20% Similarity=0.203 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHhhccccCCceeEEEEEEeccCCcccccccccccccccccccceEEEEEcCCCCCcCCCCEEEEeeeccc
Q 002689 111 RALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDLNHIVLRIQPKYASEAAENAILVSSHIDT 190 (892)
Q Consensus 111 ~a~~yL~~~l~~ig~~a~~~~~ve~d~~~~~~g~~~~~g~~~~~~~~~y~~~~NVi~~i~g~~~~~~~~~~VLl~AH~DS 190 (892)
..++|+....+.++... ..++. . + +..+++.+|.|+ ++..+.|||++|.|+
T Consensus 49 a~~~Fl~~~a~~l~l~~---~~i~~----~------------------p-~~~~~l~T~~GS---~P~L~silL~SH~DV 99 (420)
T KOG2275|consen 49 ACADFLKKYAKSLGLTV---QKIES----E------------------P-GKYVLLYTWLGS---DPELPSILLNSHTDV 99 (420)
T ss_pred HHHHHHHHHHHhcCCce---eEEEe----c------------------C-ceeEEEEEeeCC---CCCccceeeeccccc
Confidence 78999999999998421 11111 1 1 357899999997 467899999999999
Q ss_pred ccC---------------------CCCCCCchhHHHHHHHHHHHHHhcCCCCCceEEEEEeCCcCCC-CCChHHHHhcCC
Q 002689 191 VFA---------------------AEGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEEEG-LNGAHSFVTQHP 248 (892)
Q Consensus 191 v~~---------------------spGA~Dd~sgva~mLE~ar~L~~~~~~p~~~I~flf~~aEE~g-l~GS~~fv~~h~ 248 (892)
||. ++|+.|+++-++++||++|.|..+|.+|+|+|.+.|..+||.| ..|++.|+. +.
T Consensus 100 VP~f~e~W~h~Pfsa~~~~~g~IyaRGaqD~K~~~va~leAir~L~~~g~kp~Rti~lsfvpDEEi~G~~Gm~~fa~-~~ 178 (420)
T KOG2275|consen 100 VPVFREKWTHPPFSAFKDEDGNIYARGAQDMKCVGVAYLEAIRNLKASGFKPKRTIHLSFVPDEEIGGHIGMKEFAK-TE 178 (420)
T ss_pred cCCCcccCccCCccccccCCCcEEeccccchHhHHHHHHHHHHHHHhcCCCcCceEEEEecCchhccCcchHHHHhh-hh
Confidence 986 4899999999999999999999999999999999999999975 899999995 33
Q ss_pred ccCCceEEEEeeccc
Q 002689 249 WSTTIRVAIDLEAMG 263 (892)
Q Consensus 249 ~~~~v~a~INLD~~G 263 (892)
..++....+.+|=-|
T Consensus 179 ~~~~l~~~filDEG~ 193 (420)
T KOG2275|consen 179 EFKKLNLGFILDEGG 193 (420)
T ss_pred hhcccceeEEecCCC
Confidence 334444555555433
No 36
>COG4882 Predicted aminopeptidase, Iap family [General function prediction only]
Probab=99.15 E-value=6.2e-10 Score=120.96 Aligned_cols=175 Identities=17% Similarity=0.208 Sum_probs=122.5
Q ss_pred cceEEEEEcCCCCCcCCCCEEEEeeecccccCCCCCCCchhHHHHHHHHHHHHHhcCCCCCceEEEEEeCCcCCCC----
Q 002689 162 LNHIVLRIQPKYASEAAENAILVSSHIDTVFAAEGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEEEGL---- 237 (892)
Q Consensus 162 ~~NVi~~i~g~~~~~~~~~~VLl~AH~DSv~~spGA~Dd~sgva~mLE~ar~L~~~~~~p~~~I~flf~~aEE~gl---- 237 (892)
..|+|+.= + ..++.++++||.|||. -|+.||-.|++...|+++.|...+ ..+-++.+++||.|+
T Consensus 178 ~y~~Ia~~-~-----~en~vv~i~AH~DHW~--~G~tDN~lg~~~AV~~~~~lr~~~----~~~~lv~FtAEE~g~p~~~ 245 (486)
T COG4882 178 DYNVIAVD-G-----GENGVVLIGAHLDHWY--TGFTDNILGVAQAVETAGRLRGRG----LAAGLVVFTAEEHGMPGMA 245 (486)
T ss_pred EEEEEEec-C-----CCCCceEEeechhhhh--hcccchhhhHHHHHHHHHHHhhcC----cceeEEEEeccccCCCCCc
Confidence 46777642 2 2467899999999998 699999999999999999998754 456778889999875
Q ss_pred -----CChHHHHhcCCccCCceEEEEeecccCCCCcceeecCCChhHHHHHHHHccCCCCcchhhhccccCCCCCCCChH
Q 002689 238 -----NGAHSFVTQHPWSTTIRVAIDLEAMGIGGKSGLFQAGPHPWAVENFAAAAKYPSGQVTAQDLFASGAITSATDFQ 312 (892)
Q Consensus 238 -----~GS~~fv~~h~~~~~v~a~INLD~~G~gG~~~lfq~g~~~~li~~~~~~a~~p~~~~l~~~~f~~g~ips~TD~~ 312 (892)
.||+.|.++.+-.+++.+.+|+|.+|.+... + ..-|.+.+.-.+..+.... .++.+ .|-.
T Consensus 246 sfyWa~GSr~~lk~~k~~~~v~~~VN~Dv~g~~~lv-~---~~~P~L~e~~~~~g~~~ve---spe~y--------~Ds~ 310 (486)
T COG4882 246 SFYWAAGSRGLLKESKAAEEVEAYVNFDVAGYRCLV-A---SGAPQLVEHALEAGAVEVE---SPEPY--------CDSI 310 (486)
T ss_pred ceeecccchHHHhhcCCchhhhheeccccccccchh-h---hcChHHHHHHHHhCCceec---CCCcc--------cchh
Confidence 4788888888778899999999999985422 1 2246777766554221111 12332 4445
Q ss_pred HHhhcCCCeEEEEEeeCC---CCCCCCCCcCcCCCCHHHHHHHHHHHHHHHHHHHc-CCCCC
Q 002689 313 VYKEVAGLSGLDFAYTDK---SAVYHTKNDKLDLLKPGSLQHLGENMLAFLLQAAS-STSLP 370 (892)
Q Consensus 313 ~F~~~~GIPgld~a~~~~---~~~YHT~~Dt~d~id~~sLq~~g~~~l~lv~~La~-a~~l~ 370 (892)
.+.. .|||.+.+....+ +..|||+.||+... + ..-.++.+...+++ ..+.|
T Consensus 311 ~y~~-aGiPS~Ti~SL~~~~~~e~yh~p~Dtpa~~--~----n~~t~~d~a~r~v~~~ie~p 365 (486)
T COG4882 311 MYAW-AGIPSLTIHSLWCPGVQEAYHTPRDTPASW--D----NAWTAVDAAVRTVTRGIEWP 365 (486)
T ss_pred hhhh-cCCCeeEeeeccCCCccceecCCCCCchhH--H----HHHHHHHHHHHHHhcCCCCC
Confidence 5666 8999999987653 45899999999422 2 22344444555553 34443
No 37
>PRK06915 acetylornithine deacetylase; Validated
Probab=99.15 E-value=7.1e-10 Score=127.59 Aligned_cols=156 Identities=22% Similarity=0.196 Sum_probs=107.5
Q ss_pred HHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhccccCCceeEEEEEEeccCCcccccccccccccccccccceE
Q 002689 86 EFEAIKHVKALTELGPHPVGSDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDLNHI 165 (892)
Q Consensus 86 ~erA~~~L~~L~~igpr~vGS~~~~~a~~yL~~~l~~ig~~a~~~~~ve~d~~~~~~g~~~~~g~~~~~~~~~y~~~~NV 165 (892)
.+++.+.+++|.++ |- -|.++.++.+||.++|+++|. ++++........ .....+......+....||
T Consensus 16 ~~~~~~~l~~lv~i-ps--~s~~e~~~~~~l~~~l~~~G~------~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~nl 83 (422)
T PRK06915 16 EEEAVKLLKRLIQE-KS--VSGDESGAQAIVIEKLRELGL------DLDIWEPSFKKL---KDHPYFVSPRTSFSDSPNI 83 (422)
T ss_pred HHHHHHHHHHHHhC-CC--CCcchHHHHHHHHHHHHhcCC------eeEEeecchhhh---hcccccCCcccccCCCceE
Confidence 36788999999997 22 244556889999999999983 333211000000 0000000000011245899
Q ss_pred EEEEcCCCCCcCCCCEEEEeeecccccC---------------------CCCCCCchhHHHHHHHHHHHHHhcCCCCCce
Q 002689 166 VLRIQPKYASEAAENAILVSSHIDTVFA---------------------AEGAGDCSSCVAVMLELARAMSQWAHGFKNA 224 (892)
Q Consensus 166 i~~i~g~~~~~~~~~~VLl~AH~DSv~~---------------------spGA~Dd~sgva~mLE~ar~L~~~~~~p~~~ 224 (892)
+++++|. .+.+.|++.+|+|+||. ++|+.|+++|++++|.+++.|.+.+.+++.+
T Consensus 84 ia~~~g~----~~~~~l~l~~H~Dtvp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kgg~aa~l~a~~~l~~~~~~~~~~ 159 (422)
T PRK06915 84 VATLKGS----GGGKSMILNGHIDVVPEGDVNQWDHHPYSGEVIGGRIYGRGTTDMKGGNVALLLAMEALIESGIELKGD 159 (422)
T ss_pred EEEEcCC----CCCCeEEEEeeccccCCCCcccCcCCCCCceEECCEEEecCcccchHHHHHHHHHHHHHHHcCCCCCCc
Confidence 9999875 23578999999999985 2899999999999999999999887778889
Q ss_pred EEEEEeCCcCCCCCChHHHHhcCCccCCceEEEEee
Q 002689 225 VIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAIDLE 260 (892)
Q Consensus 225 I~flf~~aEE~gl~GS~~fv~~h~~~~~v~a~INLD 260 (892)
|.|++..+||.|..|+...+.+. + +...+|.-|
T Consensus 160 v~~~~~~dEE~g~~G~~~~~~~~-~--~~d~~i~~e 192 (422)
T PRK06915 160 VIFQSVIEEESGGAGTLAAILRG-Y--KADGAIIPE 192 (422)
T ss_pred EEEEEecccccCCcchHHHHhcC-c--CCCEEEECC
Confidence 99999999999888988877442 2 234555444
No 38
>PRK06837 acetylornithine deacetylase; Provisional
Probab=99.14 E-value=6.8e-10 Score=128.16 Aligned_cols=144 Identities=19% Similarity=0.135 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhccccCCceeEEEEEEeccC-Ccccccccccccccccccccce
Q 002689 86 EFEAIKHVKALTELGPHPVGSDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKS-GANRLVSGAFMGRTLIYSDLNH 164 (892)
Q Consensus 86 ~erA~~~L~~L~~igpr~vGS~~~~~a~~yL~~~l~~ig~~a~~~~~ve~d~~~~~~-g~~~~~g~~~~~~~~~y~~~~N 164 (892)
.+++.+.|++|.+| ..+ |.++.++++||.++|+++|. +++.. ..+. ......+ .......+.+..|
T Consensus 19 ~~~~~~~l~~li~i--pS~-s~~e~~~~~~l~~~l~~~G~------~~~~~--~~~~~~~~~~~~--~~~~~~~~~~~~n 85 (427)
T PRK06837 19 FDAQVAFTQDLVRF--PST-RGAEAPCQDFLARAFRERGY------EVDRW--SIDPDDLKSHPG--AGPVEIDYSGAPN 85 (427)
T ss_pred hHHHHHHHHHHhcc--CCC-CCcHHHHHHHHHHHHHHCCC------ceEEe--cCCHHHhhhccc--ccccccccCCCce
Confidence 45778889999887 222 44556899999999999984 23221 1100 0000000 0000112235689
Q ss_pred EEEEEcCCCCCcCCCCEEEEeeecccccCC---------------------CCCCCchhHHHHHHHHHHHHHhcCCCCCc
Q 002689 165 IVLRIQPKYASEAAENAILVSSHIDTVFAA---------------------EGAGDCSSCVAVMLELARAMSQWAHGFKN 223 (892)
Q Consensus 165 Vi~~i~g~~~~~~~~~~VLl~AH~DSv~~s---------------------pGA~Dd~sgva~mLE~ar~L~~~~~~p~~ 223 (892)
|+++++|. .++.+.|++.+|+|+||.+ +|+.|+++|++++|.+++.|.+.+..+++
T Consensus 86 l~a~~~g~---~~~~~~il~~gH~DvVp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kgg~~a~l~a~~~l~~~~~~~~~ 162 (427)
T PRK06837 86 VVGTYRPA---GKTGRSLILQGHIDVVPEGPLDLWSRPPFDPVIVDGWMYGRGAADMKAGLAAMLFALDALRAAGLAPAA 162 (427)
T ss_pred EEEEecCC---CCCCCeEEEEeecccCCCCCccccccCCCCcEEECCEEEecCcccchHHHHHHHHHHHHHHHcCCCCCC
Confidence 99999875 2345789999999999862 59999999999999999999988777889
Q ss_pred eEEEEEeCCcCCCCCChHHHHh
Q 002689 224 AVIFLFNTGEEEGLNGAHSFVT 245 (892)
Q Consensus 224 ~I~flf~~aEE~gl~GS~~fv~ 245 (892)
+|.|+|+.+||.+..|+...+.
T Consensus 163 ~i~~~~~~dEE~~g~g~~~~~~ 184 (427)
T PRK06837 163 RVHFQSVIEEESTGNGALSTLQ 184 (427)
T ss_pred cEEEEEEeccccCCHhHHHHHh
Confidence 9999999999988778877653
No 39
>TIGR01883 PepT-like peptidase T-like protein. This model represents a clade of enzymes closely related to Peptidase T, an aminotripeptidase found in bacteria. This clade consists of gram positive bacteria of which several additionally contain a Peptidase T gene.
Probab=99.13 E-value=5.3e-10 Score=125.77 Aligned_cols=128 Identities=25% Similarity=0.287 Sum_probs=98.1
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhccccCCceeEEEEEEeccCCcccccccccccccccccccceEEE
Q 002689 88 EAIKHVKALTELGPHPVGSDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDLNHIVL 167 (892)
Q Consensus 88 rA~~~L~~L~~igpr~vGS~~~~~a~~yL~~~l~~ig~~a~~~~~ve~d~~~~~~g~~~~~g~~~~~~~~~y~~~~NVi~ 167 (892)
|.++.+++|.+|. .-|.++.++.+||.++|+++|. +++.+. .... +.+..|+++
T Consensus 1 ~~~~~~~~l~~i~---s~s~~e~~~~~~l~~~l~~~g~------~~~~~~--~~~~---------------~~~~~~~~~ 54 (361)
T TIGR01883 1 RLKKYFLELIQID---SESGKEKAILTYLKKQITKLGI------PVSLDE--VPAE---------------VSNDNNLIA 54 (361)
T ss_pred ChHHHHHHHeecC---CCCCcHHHHHHHHHHHHHHcCC------EEEEec--cccc---------------cCCCceEEE
Confidence 4678899999872 2234556899999999999983 333321 1000 013579999
Q ss_pred EEcCCCCCcCCCCEEEEeeecccccC--------------CCCC----CCchhHHHHHHHHHHHHHhcCCCCCceEEEEE
Q 002689 168 RIQPKYASEAAENAILVSSHIDTVFA--------------AEGA----GDCSSCVAVMLELARAMSQWAHGFKNAVIFLF 229 (892)
Q Consensus 168 ~i~g~~~~~~~~~~VLl~AH~DSv~~--------------spGA----~Dd~sgva~mLE~ar~L~~~~~~p~~~I~flf 229 (892)
+++|+ .+.+.|++++|+|+||. ++|+ .|+++|+|++|++++.|.+.+ .++.+|.|+|
T Consensus 55 ~~~g~----~~~~~i~l~~H~D~V~~~~~~~~~~~~~~~~g~G~~~~g~D~k~g~a~~l~~~~~l~~~~-~~~~~v~~~~ 129 (361)
T TIGR01883 55 RLPGT----VKFDTIFFCGHMDTVPPGAGPEPVVEDGIFTSLGGTILGADDKAGVAAMLEAMDVLSTEE-TPHGTIEFIF 129 (361)
T ss_pred EEeCC----CCCCcEEEEeeccccCCCCCCCceecCCeEecCCCeEeeccccHHHHHHHHHHHHHHhcC-CCCCCEEEEE
Confidence 99875 23478999999999984 3677 899999999999999998865 5678999999
Q ss_pred eCCcCCCCCChHHHHhc
Q 002689 230 NTGEEEGLNGAHSFVTQ 246 (892)
Q Consensus 230 ~~aEE~gl~GS~~fv~~ 246 (892)
+.+||.|..|++.+...
T Consensus 130 ~~~EE~g~~G~~~~~~~ 146 (361)
T TIGR01883 130 TVKEELGLIGMRLFDES 146 (361)
T ss_pred EcccccCchhHhHhChh
Confidence 99999999999988743
No 40
>PRK07079 hypothetical protein; Provisional
Probab=99.13 E-value=7.6e-10 Score=129.31 Aligned_cols=147 Identities=15% Similarity=0.109 Sum_probs=104.1
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCC-H-HHHHHHHHHHH----HHHhhccccCCceeEEEEEEeccCCcccccccccccccc
Q 002689 84 FSEFEAIKHVKALTELGPHPVGS-D-ALDRALQYVFA----AAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTL 157 (892)
Q Consensus 84 fs~erA~~~L~~L~~igpr~vGS-~-~~~~a~~yL~~----~l~~ig~~a~~~~~ve~d~~~~~~g~~~~~g~~~~~~~~ 157 (892)
++++++.+.|++|.+| ..+.. + +...+++|+.+ .|+++|. +++. .....
T Consensus 14 ~~~~~~~~~L~~LV~i--pSvs~~~~~~~~~~~~l~~~~~~~l~~~G~------~~~~--~~~~~--------------- 68 (469)
T PRK07079 14 FDSGAFFADLARRVAY--RTESQNPDRAPALRAYLTDEIAPALAALGF------TCRI--VDNPV--------------- 68 (469)
T ss_pred hccHHHHHHHHHHhcc--CCCCCCcccHHHHHHHHHHHHHHHHHHCCC------eEEE--EecCC---------------
Confidence 4456889999999998 33322 2 23356666654 6666652 3332 11100
Q ss_pred cccccceEEEEEcCCCCCcCCCCEEEEeeecccccC----------------------CCCCCCchhHHHHHHHHHHHHH
Q 002689 158 IYSDLNHIVLRIQPKYASEAAENAILVSSHIDTVFA----------------------AEGAGDCSSCVAVMLELARAMS 215 (892)
Q Consensus 158 ~y~~~~NVi~~i~g~~~~~~~~~~VLl~AH~DSv~~----------------------spGA~Dd~sgva~mLE~ar~L~ 215 (892)
..+..||++++.|. .+.+.|++++|+|+||. ++|+.|+|+|++++|.+++.|.
T Consensus 69 -~~~~~~vva~~~~~----~~~~~lll~gH~DvVp~~~~~W~~~~~Pf~~~~~dg~lyGRGa~DmKgg~aa~l~A~~~l~ 143 (469)
T PRK07079 69 -AGGGPFLIAERIED----DALPTVLIYGHGDVVRGYDEQWREGLSPWTLTEEGDRWYGRGTADNKGQHTINLAALEQVL 143 (469)
T ss_pred -CCCCCEEEEEeCCC----CCCCEEEEEcccCCCCCChHHhcccCCCCcccccCCEEEEEeccCCcHHHHHHHHHHHHHH
Confidence 01347999998553 24578999999999973 2899999999999999999987
Q ss_pred hc-CCCCCceEEEEEeCCcCCCCCChHHHHhcCCccCCceEEEEee
Q 002689 216 QW-AHGFKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAIDLE 260 (892)
Q Consensus 216 ~~-~~~p~~~I~flf~~aEE~gl~GS~~fv~~h~~~~~v~a~INLD 260 (892)
+. +.+++.+|+|++..+||.|..|++.++++++...+..++|+.|
T Consensus 144 ~~~~~~~~~~i~~~~~~dEE~g~~G~~~l~~~~~~~~~~d~~iv~e 189 (469)
T PRK07079 144 AARGGRLGFNVKLLIEMGEEIGSPGLAEVCRQHREALAADVLIASD 189 (469)
T ss_pred HhcCCCCCCCEEEEEECccccCCccHHHHHHHhHHhcCCCEEEEeC
Confidence 54 4678899999999999999999999998764222245566655
No 41
>PRK07522 acetylornithine deacetylase; Provisional
Probab=99.12 E-value=7.2e-10 Score=125.63 Aligned_cols=141 Identities=18% Similarity=0.208 Sum_probs=103.6
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhccccCCceeEEEEEEeccCCcccccccccccccccccccceEE
Q 002689 87 FEAIKHVKALTELGPHPVGSDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDLNHIV 166 (892)
Q Consensus 87 erA~~~L~~L~~igpr~vGS~~~~~a~~yL~~~l~~ig~~a~~~~~ve~d~~~~~~g~~~~~g~~~~~~~~~y~~~~NVi 166 (892)
..+.+.|++|.+| |.+.+ .++.++.+||.++|+++|. +++.. .... .+..||+
T Consensus 4 ~~~~~~l~~lv~i-~S~s~-~~~~~~~~~l~~~l~~~G~------~~~~~--~~~~-----------------~~~~nv~ 56 (385)
T PRK07522 4 MSSLDILERLVAF-DTVSR-DSNLALIEWVRDYLAAHGV------ESELI--PDPE-----------------GDKANLF 56 (385)
T ss_pred hhHHHHHHHHhCC-CCcCC-CccHHHHHHHHHHHHHcCC------eEEEE--ecCC-----------------CCcccEE
Confidence 4578899999997 22222 2234889999999999983 33322 1100 0347999
Q ss_pred EEEcCCCCCcCCCCEEEEeeecccccC--------------------CCCCCCchhHHHHHHHHHHHHHhcCCCCCceEE
Q 002689 167 LRIQPKYASEAAENAILVSSHIDTVFA--------------------AEGAGDCSSCVAVMLELARAMSQWAHGFKNAVI 226 (892)
Q Consensus 167 ~~i~g~~~~~~~~~~VLl~AH~DSv~~--------------------spGA~Dd~sgva~mLE~ar~L~~~~~~p~~~I~ 226 (892)
+++.+. ..+.|++.+|+|+|+. ++|+.|+++++|++|++++.|.+. +++++|.
T Consensus 57 a~~~~~-----~~~~ill~~H~Dtv~~~~~~W~~~pf~~~~~~g~i~GrG~~D~Kg~~a~~l~a~~~l~~~--~~~~~i~ 129 (385)
T PRK07522 57 ATIGPA-----DRGGIVLSGHTDVVPVDGQAWTSDPFRLTERDGRLYGRGTCDMKGFIAAALAAVPELAAA--PLRRPLH 129 (385)
T ss_pred EEeCCC-----CCCeEEEEeecccccCCCCCCCCCCCceEEECCEEEeccccccchHHHHHHHHHHHHHhC--CCCCCEE
Confidence 998543 2468999999999974 389999999999999999999875 4678999
Q ss_pred EEEeCCcCCCCCChHHHHhcCCc-cCCceEEEEeec
Q 002689 227 FLFNTGEEEGLNGAHSFVTQHPW-STTIRVAIDLEA 261 (892)
Q Consensus 227 flf~~aEE~gl~GS~~fv~~h~~-~~~v~a~INLD~ 261 (892)
|+|..+||.|..|++.++++... ..+...+|..|.
T Consensus 130 ~~~~~dEE~g~~G~~~l~~~~~~~~~~~d~~i~~ep 165 (385)
T PRK07522 130 LAFSYDEEVGCLGVPSMIARLPERGVKPAGCIVGEP 165 (385)
T ss_pred EEEEeccccCCccHHHHHHHhhhcCCCCCEEEEccC
Confidence 99999999988999999865332 123455555554
No 42
>TIGR01892 AcOrn-deacetyl acetylornithine deacetylase (ArgE). This model represents a clade of acetylornithine deacetylases from proteobacteria. This enzyme is the final step of the "acetylated" ornithine biosynthesis pathway. The enzyme is closely related to dapE, succinyl-diaminopimelate desuccinylase, and outside of this clade annotation is very inaccurate as to which function should be ascribed to genes.
Probab=99.12 E-value=7e-10 Score=124.59 Aligned_cols=135 Identities=21% Similarity=0.214 Sum_probs=98.4
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhccccCCceeEEEEEEeccCCcccccccccccccccccccceEEEEEcC
Q 002689 92 HVKALTELGPHPVGSDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDLNHIVLRIQP 171 (892)
Q Consensus 92 ~L~~L~~igpr~vGS~~~~~a~~yL~~~l~~ig~~a~~~~~ve~d~~~~~~g~~~~~g~~~~~~~~~y~~~~NVi~~i~g 171 (892)
.|++|.+|.. +.+. ++.++++||.++|+++|. +++.+. ...+ .+..||++++.|
T Consensus 2 ~l~~lv~i~S-~s~~-~~~~~~~~l~~~l~~~G~------~~~~~~--~~~~----------------~~~~nl~~~~~~ 55 (364)
T TIGR01892 2 ILTKLVAFDS-TSFR-PNVDLIDWAQAYLEALGF------SVEVQP--FPDG----------------AEKSNLVAVIGP 55 (364)
T ss_pred hHHHhhCcCC-cCCc-cHHHHHHHHHHHHHHcCC------eEEEEe--CCCC----------------CccccEEEEecC
Confidence 5778888722 2222 335899999999999983 344321 1100 035799999855
Q ss_pred CCCCcCCCCEEEEeeecccccC--------------------CCCCCCchhHHHHHHHHHHHHHhcCCCCCceEEEEEeC
Q 002689 172 KYASEAAENAILVSSHIDTVFA--------------------AEGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNT 231 (892)
Q Consensus 172 ~~~~~~~~~~VLl~AH~DSv~~--------------------spGA~Dd~sgva~mLE~ar~L~~~~~~p~~~I~flf~~ 231 (892)
+ ..+.|++.+|+|+||. ++|+.|+++|++++|.+++.|.+. +.+++|.|+|..
T Consensus 56 ~-----~~~~i~l~~H~Dtvp~~~~~w~~~Pf~~~~~~~~i~GrG~~D~Kg~~a~~l~a~~~l~~~--~~~~~v~~~~~~ 128 (364)
T TIGR01892 56 S-----GAGGLALSGHTDVVPYDDAAWTRDPFRLTEKDGRLYGRGTCDMKGFLACALAAAPDLAAE--QLKKPLHLALTA 128 (364)
T ss_pred C-----CCCeEEEEcccccccCCCCcCCCCCCcceeeCCEEEecCccccchHHHHHHHHHHHHHhc--CcCCCEEEEEEe
Confidence 3 2467999999999974 389999999999999999999875 357899999999
Q ss_pred CcCCCCCChHHHHhcCCccCCceEEEEeec
Q 002689 232 GEEEGLNGAHSFVTQHPWSTTIRVAIDLEA 261 (892)
Q Consensus 232 aEE~gl~GS~~fv~~h~~~~~v~a~INLD~ 261 (892)
+||.|..|++.++++... +...++..|.
T Consensus 129 ~EE~g~~G~~~~~~~~~~--~~d~~i~~ep 156 (364)
T TIGR01892 129 DEEVGCTGAPKMIEAGAG--RPRHAIIGEP 156 (364)
T ss_pred ccccCCcCHHHHHHhcCC--CCCEEEECCC
Confidence 999999999999966542 2234454444
No 43
>PRK13381 peptidase T; Provisional
Probab=99.11 E-value=7.6e-10 Score=126.77 Aligned_cols=125 Identities=15% Similarity=0.238 Sum_probs=96.0
Q ss_pred HHHHHHHHHhcCCCC-------CCCHHHHHHHHHHHHHHHhhccccCCceeEEEEEEeccCCcccccccccccccccccc
Q 002689 89 AIKHVKALTELGPHP-------VGSDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSD 161 (892)
Q Consensus 89 A~~~L~~L~~igpr~-------vGS~~~~~a~~yL~~~l~~ig~~a~~~~~ve~d~~~~~~g~~~~~g~~~~~~~~~y~~ 161 (892)
+.+.+.++.+|.... .++++++++++||.++|+++|.+ .++++ +
T Consensus 3 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G~~-----~~~~~------------------------~ 53 (404)
T PRK13381 3 LTDRFFRYLKVNSQSDAASGTLPSTPGQHELAKLLADELRELGLE-----DIVID------------------------E 53 (404)
T ss_pred HHHHhHhhEEEeccCCCCCCCCcCChhHHHHHHHHHHHHHHcCCC-----cEEEc------------------------C
Confidence 567788888773221 12345678999999999999831 12211 2
Q ss_pred cceEEEEEcCCCCCcCCCCEEEEeeecccccCC----------------------------------------------C
Q 002689 162 LNHIVLRIQPKYASEAAENAILVSSHIDTVFAA----------------------------------------------E 195 (892)
Q Consensus 162 ~~NVi~~i~g~~~~~~~~~~VLl~AH~DSv~~s----------------------------------------------p 195 (892)
..||+++++|+. ...+.|++++|+|+||.. +
T Consensus 54 ~~nvi~~~~g~~---~~~~~lll~~H~D~Vp~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gr 130 (404)
T PRK13381 54 HAIVTAKLPGNT---PGAPRIGFIAHLDTVDVGLSPDIHPQILRFDGGDLCLNAEQGIWLRTAEHPELLNYQGEDIIFSD 130 (404)
T ss_pred CeEEEEEEecCC---CCCCeEEEEEEecCCCccCCCCcCcEEEecCCCceecCCccceeechHhChhHHhccCCcEEeCC
Confidence 369999998751 223889999999999743 4
Q ss_pred CC----CCchhHHHHHHHHHHHHHhcCCCCCceEEEEEeCCcCCCCCChHHHHhc
Q 002689 196 GA----GDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEEEGLNGAHSFVTQ 246 (892)
Q Consensus 196 GA----~Dd~sgva~mLE~ar~L~~~~~~p~~~I~flf~~aEE~gl~GS~~fv~~ 246 (892)
|+ .|+++|+|++|.+++.|.+.+ .++.+|.|+|..+||.|..|++.++.+
T Consensus 131 G~~~~g~DmKgg~aa~l~a~~~l~~~~-~~~g~i~~~~~~dEE~g~~G~~~~~~~ 184 (404)
T PRK13381 131 GTSVLGADNKAAIAVVMTLLENLTENE-VEHGDIVVAFVPDEEIGLRGAKALDLA 184 (404)
T ss_pred CccccccccHHHHHHHHHHHHHHHhcC-CCCCCEEEEEEcccccccccHHHHHHh
Confidence 67 999999999999999998764 457799999999999999999999744
No 44
>PRK05469 peptidase T; Provisional
Probab=99.11 E-value=7.5e-10 Score=126.98 Aligned_cols=126 Identities=13% Similarity=0.186 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHhcCCCCCC-------CHHHHHHHHHHHHHHHhhccccCCceeEEEEEEeccCCcccccccccccccccc
Q 002689 87 FEAIKHVKALTELGPHPVG-------SDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIY 159 (892)
Q Consensus 87 erA~~~L~~L~~igpr~vG-------S~~~~~a~~yL~~~l~~ig~~a~~~~~ve~d~~~~~~g~~~~~g~~~~~~~~~y 159 (892)
+.+.+.|++|.+|..-... ..+.+++.+||.++|+++|.+ .++++
T Consensus 2 ~~~~~~l~~~~~i~s~s~~~~~~~~~~~~~~~~a~~l~~~l~~~G~~-----~~~~~----------------------- 53 (408)
T PRK05469 2 DKLLERFLRYVKIDTQSDENSTTVPSTEGQWDLAKLLVEELKELGLQ-----DVTLD----------------------- 53 (408)
T ss_pred chHHHHHHhhEEeecccCCCCCCCCCCHHHHHHHHHHHHHHHHcCCC-----eEEEC-----------------------
Confidence 4577889999887322111 134578999999999999831 12222
Q ss_pred cccceEEEEEcCCCCCcCCCCEEEEeeecccccC----------------------------------------------
Q 002689 160 SDLNHIVLRIQPKYASEAAENAILVSSHIDTVFA---------------------------------------------- 193 (892)
Q Consensus 160 ~~~~NVi~~i~g~~~~~~~~~~VLl~AH~DSv~~---------------------------------------------- 193 (892)
...||+++++|+. ..+.+.|++.+|+|+||.
T Consensus 54 -~~~~v~~~~~g~~--~~~~~~i~l~~H~D~vp~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 130 (408)
T PRK05469 54 -ENGYVMATLPANV--DKDVPTIGFIAHMDTAPDFSGKNVKPQIIENYDGGDIALGDGNEVLSPAEFPELKNYIGQTLIT 130 (408)
T ss_pred -CCeEEEEEecCCC--CCCCCeEEEEEeccCCCCCCCCCCCCEEeccCCCcceecCCCceEechHhCchHHhccCCCEEE
Confidence 2358999998741 234589999999999964
Q ss_pred CCCC----CCchhHHHHHHHHHHHHHhcCCCCCceEEEEEeCCcCCCCCChHHHH
Q 002689 194 AEGA----GDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEEEGLNGAHSFV 244 (892)
Q Consensus 194 spGA----~Dd~sgva~mLE~ar~L~~~~~~p~~~I~flf~~aEE~gl~GS~~fv 244 (892)
++|+ .|+++|+|+||.+++.|.+.+..++.+|+|+|..+||.| .|++.++
T Consensus 131 ~rG~~~lg~D~Kgglaa~l~a~~~l~~~~~~~~g~v~~~f~~dEE~g-~Ga~~~~ 184 (408)
T PRK05469 131 TDGTTLLGADDKAGIAEIMTALEYLIAHPEIKHGDIRVAFTPDEEIG-RGADKFD 184 (408)
T ss_pred cCCCEeecccchHHHHHHHHHHHHHHhCCCCCCCCEEEEEecccccC-CCHHHhh
Confidence 2365 999999999999999998766567789999999999998 8999886
No 45
>PRK13007 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=99.11 E-value=1e-09 Score=122.82 Aligned_cols=133 Identities=27% Similarity=0.298 Sum_probs=102.0
Q ss_pred HHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhh-ccccCCceeEEEEEEeccCCcccccccccccccccccccce
Q 002689 86 EFEAIKHVKALTELGPHPVGSDALDRALQYVFAAAQKI-KETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDLNH 164 (892)
Q Consensus 86 ~erA~~~L~~L~~igpr~vGS~~~~~a~~yL~~~l~~i-g~~a~~~~~ve~d~~~~~~g~~~~~g~~~~~~~~~y~~~~N 164 (892)
.+++.+.+++|.++ |-+ |..+.++.+||.++|+++ + .+++. ...|
T Consensus 6 ~~~~~~~l~~li~i-ps~--s~~e~~~~~~l~~~l~~~~~------~~~~~-------------------------~~~~ 51 (352)
T PRK13007 6 AADLAELTAALVDI-PSV--SGDEKALADAVEAALRALPH------LEVIR-------------------------HGNS 51 (352)
T ss_pred HHHHHHHHHHHhcC-CCC--CchHHHHHHHHHHHHHhCcC------ceEEe-------------------------cCCe
Confidence 36889999999997 333 444568899999999986 4 12211 1258
Q ss_pred EEEEEcCCCCCcCCCCEEEEeeecccccC--------------CCCCCCchhHHHHHHHHHHHHHhcCCCCCceEEEEEe
Q 002689 165 IVLRIQPKYASEAAENAILVSSHIDTVFA--------------AEGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFN 230 (892)
Q Consensus 165 Vi~~i~g~~~~~~~~~~VLl~AH~DSv~~--------------spGA~Dd~sgva~mLE~ar~L~~~~~~p~~~I~flf~ 230 (892)
+++++.+. ..+.|++++|+|+||. ++|+.|+++|+|++|.+++.|. +++++|.|+|.
T Consensus 52 ~~~~~~~~-----~~~~i~l~~H~Dtvp~~~~~~~~~~~g~i~GrG~~D~Kg~~a~~l~a~~~l~----~~~~~i~~~~~ 122 (352)
T PRK13007 52 VVARTDLG-----RPSRVVLAGHLDTVPVADNLPSRREGDRLYGCGASDMKSGLAVMLHLAATLA----EPAHDLTLVFY 122 (352)
T ss_pred EEEEccCC-----CCCeEEEEccccccCCCCCCCcceeCCEEEccCcccccHHHHHHHHHHHHhh----ccCCCeEEEEE
Confidence 99998432 2246999999999985 3899999999999999999993 36789999999
Q ss_pred CCcCCCC--CChHHHHhcCCccCCceEEEEeec
Q 002689 231 TGEEEGL--NGAHSFVTQHPWSTTIRVAIDLEA 261 (892)
Q Consensus 231 ~aEE~gl--~GS~~fv~~h~~~~~v~a~INLD~ 261 (892)
++||.|. .|+..++.+++...+..++|+.|.
T Consensus 123 ~~EE~~~~~~G~~~~~~~~~~~~~~d~~i~~ep 155 (352)
T PRK13007 123 DCEEVEAEANGLGRLAREHPEWLAGDFAILLEP 155 (352)
T ss_pred ecccccCCcccHHHHHHhcccccCCCEEEEecC
Confidence 9999864 588888866654445678888875
No 46
>PF09940 DUF2172: Domain of unknown function (DUF2172); InterPro: IPR012353 The proteins in this entry are encoded by genes located in polysaccharide biosynthesis gene clusters, and are therefore believed to be involved in polysaccharide biosynthesis. The ste gene cluster (for Streptomyces eps) is involved in exopolysaccharide EPS 139A biosynthesis in Streptomyces sp. 139 []. Members of this group exhibit distant sequence similarity to aminopeptidases (IPR007484 from INTERPRO, MEROPS peptidase family M28).; PDB: 3K9T_A.
Probab=99.11 E-value=2.1e-09 Score=118.98 Aligned_cols=240 Identities=19% Similarity=0.194 Sum_probs=131.4
Q ss_pred CCCHHHHHHHHHHHHh----cCCCCCCC-HHHH-HHHHHHHHHHHhhccccCCceeEEEEEEeccCCccccccccccccc
Q 002689 83 GFSEFEAIKHVKALTE----LGPHPVGS-DALD-RALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRT 156 (892)
Q Consensus 83 ~fs~erA~~~L~~L~~----igpr~vGS-~~~~-~a~~yL~~~l~~ig~~a~~~~~ve~d~~~~~~g~~~~~g~~~~~~~ 156 (892)
..+-++..+||..+-+ |..|+..- +..- -.. .++++++.. .+++|.+|.... . | .
T Consensus 56 ~lsl~eL~~Hl~tlp~~PdaIPY~TsYY~~~WGFCl~---~~~~~~L~d---g~Y~V~IdS~l~-~------G------~ 116 (386)
T PF09940_consen 56 TLSLEELKKHLHTLPDQPDAIPYRTSYYKRRWGFCLS---HNQLDALPD---GEYEVVIDSTLE-D------G------S 116 (386)
T ss_dssp EEEHHHHGGGEE--TTSTT--B--B-SSS----EE-----HHHHHT--S---SEEEEEEEEEEE-S-------------E
T ss_pred EEeHHHHHhhhccCCCCCCccceeeecccCCcccccC---HHHHhhCCC---CceEEEEeeeec-C------C------c
Confidence 4567788888877765 32233222 1111 011 223334432 346777775432 1 2 1
Q ss_pred ccccccceEEEEEcCCCCCcCCCCEEEEeeecccccCCCCCCCchhHHHHHHHHHHHHHhcCCCCCceEEEEEeCCcCCC
Q 002689 157 LIYSDLNHIVLRIQPKYASEAAENAILVSSHIDTVFAAEGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEEEG 236 (892)
Q Consensus 157 ~~y~~~~NVi~~i~g~~~~~~~~~~VLl~AH~DSv~~spGA~Dd~sgva~mLE~ar~L~~~~~~p~~~I~flf~~aEE~g 236 (892)
..| --..++|. +++-|++++|.+|.. -|+||.||++++.++++.|++. +.+.+..|+|.. +
T Consensus 117 L~y-----gE~~ipG~-----s~~EillsthiCHPs---mANdnLSG~~v~~~La~~L~~~--~~rytYRflf~P----e 177 (386)
T PF09940_consen 117 LTY-----GEFVIPGE-----SDEEILLSTHICHPS---MANDNLSGPAVLTFLAKWLKQL--PNRYTYRFLFVP----E 177 (386)
T ss_dssp EEE-----EEEEE--S-----SS-EEEEEEE----S----TTTTHHHHHHHHHHHHHHTTS----SSEEEEEEE-----T
T ss_pred eeE-----EEEEecCC-----CCCeEEEEEeccCcc---cccccccHHHHHHHHHHHHhcC--CcCceEEEEEcc----c
Confidence 122 23345774 577899999999974 6999999999999999999975 355999999997 5
Q ss_pred CCChHHHHhcCCc--cCCceEEEEeecccCCCCcceeecCC-ChhHHHHH-HHHccCCCCcchhhhccccCCCCCCCChH
Q 002689 237 LNGAHSFVTQHPW--STTIRVAIDLEAMGIGGKSGLFQAGP-HPWAVENF-AAAAKYPSGQVTAQDLFASGAITSATDFQ 312 (892)
Q Consensus 237 l~GS~~fv~~h~~--~~~v~a~INLD~~G~gG~~~lfq~g~-~~~li~~~-~~~a~~p~~~~l~~~~f~~g~ips~TD~~ 312 (892)
-.||-.|+.+|.. .+++++.++|.++|..|.-. ++.+. +..+++.. ..+.++-... ...+ ...|.++|.+
T Consensus 178 TIGsI~yLskn~~~l~~~v~~G~vLtcvGD~~~~s-yk~Sr~g~~~iDr~~~~vl~~~~~~---~~~~--~F~~~GsDER 251 (386)
T PF09940_consen 178 TIGSITYLSKNLDELKKNVKAGLVLTCVGDDGAYS-YKRSRRGNTLIDRAAAHVLKHSGPN---FKIY--DFLPRGSDER 251 (386)
T ss_dssp THHHHHHHHH-GGGGGG-EEEEEE--S--SSS-EE-EE--TTSSSHHHHHHHHHHHHSSS----EEEE-----S-SSTHH
T ss_pred cHHHHHHHHHCHHHHhhheeeeEEEEEecCCCCcc-eecCCCCCcHHHHHHHHHHHhcCCC---ceEe--cccccCCCcc
Confidence 7999999988864 34599999999999877443 44333 33344332 2222111111 0122 1467899999
Q ss_pred HHhhcC-CCeEEEEEee--CCCCCCCCCCcCcCCCCHHHHHHHHHHHHHHHHHHHcC
Q 002689 313 VYKEVA-GLSGLDFAYT--DKSAVYHTKNDKLDLLKPGSLQHLGENMLAFLLQAASS 366 (892)
Q Consensus 313 ~F~~~~-GIPgld~a~~--~~~~~YHT~~Dt~d~id~~sLq~~g~~~l~lv~~La~a 366 (892)
.|..-+ ++|...+.-. +..+-|||..|+++.|+++.|+..-+.++..+..|-+.
T Consensus 252 QfcSPG~dLPv~~~~Rs~yg~ypEYHTS~Dnl~fi~p~~L~~s~~~~~~~i~~lE~n 308 (386)
T PF09940_consen 252 QFCSPGFDLPVGSLMRSKYGEYPEYHTSLDNLDFISPEGLEGSFEVLLEAIEILENN 308 (386)
T ss_dssp HHTSTTT---EEEEESS-TT--TTTTBTTSSGGG--HHHHHHHHHHHHHHHHHHHH-
T ss_pred eeecCCcCCceeeeecccccCCcccccCCCccccCCHHHHHHHHHHHHHHHHHHhcC
Confidence 998622 3565554422 33458999999999999999999999999998888765
No 47
>COG1363 FrvX Cellulase M and related proteins [Carbohydrate transport and metabolism]
Probab=99.11 E-value=6.9e-09 Score=116.03 Aligned_cols=227 Identities=20% Similarity=0.259 Sum_probs=157.4
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhccccCCceeEEEEEEeccCCcccccccccccccccccccceEE
Q 002689 87 FEAIKHVKALTELGPHPVGSDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDLNHIV 166 (892)
Q Consensus 87 erA~~~L~~L~~igpr~vGS~~~~~a~~yL~~~l~~ig~~a~~~~~ve~d~~~~~~g~~~~~g~~~~~~~~~y~~~~NVi 166 (892)
+...+.|++|+++ +-+.|.+ +++++|+.++|++++. +++.| +..||+
T Consensus 2 ~~~~~~LkeL~~~-~gpsG~E--~eVr~~~~~el~~~~~------ev~~D------------------------~lGnli 48 (355)
T COG1363 2 EELLELLKELLEA-PGPSGYE--EEVRDVLKEELEPLGD------EVEVD------------------------RLGNLI 48 (355)
T ss_pred hHHHHHHHHHHcC-CCCCCcH--HHHHHHHHHHHHHhCC------ceEEc------------------------CCCcEE
Confidence 3567889999985 4455543 3589999999999973 34443 568999
Q ss_pred EEEcCCCCCcCCCCEEEEeeecccccCC----------------------------------------------------
Q 002689 167 LRIQPKYASEAAENAILVSSHIDTVFAA---------------------------------------------------- 194 (892)
Q Consensus 167 ~~i~g~~~~~~~~~~VLl~AH~DSv~~s---------------------------------------------------- 194 (892)
++++|+ ...+.|++.||+|.+..-
T Consensus 49 a~~~g~----~g~~~imi~AHmDEiG~mV~~I~~~G~Lr~~~IGG~~~~~~~gq~v~i~t~~g~~i~GvIg~~p~H~~~~ 124 (355)
T COG1363 49 AKKGGK----NGPPKVMIAAHMDEIGFMVKEIEDDGFLRFVPIGGWDPQVLEGQRVTIHTDKGKKIRGVIGSKPPHLLKE 124 (355)
T ss_pred EEecCC----CCCccEEEEeecceeeeeEEEECCCceEEEEEcCCcChhhccCcEEEEEeCCCcEEeeeEcccCccccCc
Confidence 999884 234559999999998520
Q ss_pred ---------------------------------------------------CCCCCchhHHHHHHHHHHHHHhcCCCCCc
Q 002689 195 ---------------------------------------------------EGAGDCSSCVAVMLELARAMSQWAHGFKN 223 (892)
Q Consensus 195 ---------------------------------------------------pGA~Dd~sgva~mLE~ar~L~~~~~~p~~ 223 (892)
.=|-||..||++|||++|.| + +..++.
T Consensus 125 ~~~~~~~~~~~el~iDiga~skeea~~lGI~vGd~v~~~~~~~~l~~~~i~skalDdR~gva~lle~lk~l-~-~~~~~~ 202 (355)
T COG1363 125 EAERKKPPEWDELFIDIGASSKEEAEELGIRVGDFVVFDPRFRELANGRVVSKALDDRAGVAALLELLKEL-K-GIELPA 202 (355)
T ss_pred cccccCCCchhhEEEECCcCCHHHHHhcCCCCCCEEEEcCceEEecCCcEEeeeccchHhHHHHHHHHHHh-c-cCCCCc
Confidence 12679999999999999999 4 567899
Q ss_pred eEEEEEeCCcCCCCCChHHHHhcCCccCCceEEEEeecccCCC--------------Ccceeec--CC-ChhHHHHHHHH
Q 002689 224 AVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAIDLEAMGIGG--------------KSGLFQA--GP-HPWAVENFAAA 286 (892)
Q Consensus 224 ~I~flf~~aEE~gl~GS~~fv~~h~~~~~v~a~INLD~~G~gG--------------~~~lfq~--g~-~~~li~~~~~~ 286 (892)
+++|+|+.-||.|+.||+....+ -+-..+|.+|..+.+. +.+.+.. ++ ++.+.+...+.
T Consensus 203 ~vy~v~tvqEEVGlrGA~~~a~~----i~pd~aiavd~~~~~d~~~~~~~~~~lg~Gp~i~~~D~~~~~~~~l~~~L~~~ 278 (355)
T COG1363 203 DVYFVASVQEEVGLRGAKTSAFR----IKPDIAIAVDVTPAGDTPGVPKGDVKLGKGPVIRVKDASGIYHPKLRKFLLEL 278 (355)
T ss_pred eEEEEEecchhhccchhhccccc----cCCCEEEEEecccccCCCCCcccccccCCCCEEEEEcCCCCCCHHHHHHHHHH
Confidence 99999999999999999987732 2345777777765532 2222332 23 56676666554
Q ss_pred ccCCCCcchhhhccccCCCCCCCChHHHhhc-CCCeEEEEEeeCCCCCCCCCCcCcCCCCHHHHHHHHHHHHHHHHHHHc
Q 002689 287 AKYPSGQVTAQDLFASGAITSATDFQVYKEV-AGLSGLDFAYTDKSAVYHTKNDKLDLLKPGSLQHLGENMLAFLLQAAS 365 (892)
Q Consensus 287 a~~p~~~~l~~~~f~~g~ips~TD~~~F~~~-~GIPgld~a~~~~~~~YHT~~Dt~d~id~~sLq~~g~~~l~lv~~La~ 365 (892)
++. .+..+..+++.. .+||-..+... .|+|...+..-- .+-|++ .+.++.+.+.++.+.+.+++..+..
T Consensus 279 A~~-~~Ip~Q~~v~~~----ggTDA~a~~~~g~gvpta~Igip~--ry~Hs~---~e~~~~~D~~~~~~Ll~~~i~~~~~ 348 (355)
T COG1363 279 AEK-NNIPYQVDVSPG----GGTDAGAAHLTGGGVPTALIGIPT--RYIHSP---VEVAHLDDLEATVKLLVAYLESLDR 348 (355)
T ss_pred HHH-cCCCeEEEecCC----CCccHHHHHHcCCCCceEEEeccc--ccccCc---ceeecHHHHHHHHHHHHHHHHhcch
Confidence 422 111111233321 58998887663 479998776432 134665 4677888888888888888877654
Q ss_pred C
Q 002689 366 S 366 (892)
Q Consensus 366 a 366 (892)
.
T Consensus 349 ~ 349 (355)
T COG1363 349 E 349 (355)
T ss_pred h
Confidence 3
No 48
>PRK06156 hypothetical protein; Provisional
Probab=99.10 E-value=1.9e-09 Score=127.63 Aligned_cols=136 Identities=16% Similarity=0.164 Sum_probs=102.3
Q ss_pred CHHHHHHHHHHHHhcCCCCCCC--------HHHHHHHHHHHHHHHhhccccCCceeEEEEEEeccCCccccccccccccc
Q 002689 85 SEFEAIKHVKALTELGPHPVGS--------DALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRT 156 (892)
Q Consensus 85 s~erA~~~L~~L~~igpr~vGS--------~~~~~a~~yL~~~l~~ig~~a~~~~~ve~d~~~~~~g~~~~~g~~~~~~~ 156 (892)
..+++.+.|++|.+|. .++. ++.....+||.+.+++.|. +++.
T Consensus 44 ~~~~~~~~l~~lv~i~--S~~~~~~~~~e~~~~~~~~~~l~~~l~~~G~------~~~~--------------------- 94 (520)
T PRK06156 44 YGAAAIESLRELVAFP--TVRVEGVPQHENPEFIGFKKLLKSLARDFGL------DYRN--------------------- 94 (520)
T ss_pred hHHHHHHHHHHhcCcC--cccCCCCCccCCccHHHHHHHHHHHHHHCCC------eEEe---------------------
Confidence 4467888999999873 2221 1224567999999999883 2211
Q ss_pred ccccccceEE-EEEcCCCCCcCCCCEEEEeeecccccC-------------------------CCCCCCchhHHHHHHHH
Q 002689 157 LIYSDLNHIV-LRIQPKYASEAAENAILVSSHIDTVFA-------------------------AEGAGDCSSCVAVMLEL 210 (892)
Q Consensus 157 ~~y~~~~NVi-~~i~g~~~~~~~~~~VLl~AH~DSv~~-------------------------spGA~Dd~sgva~mLE~ 210 (892)
...+|+ ++++|. ..+.|++++|+|+||. ++|+.|++.|+++++++
T Consensus 95 ----~~~~v~~~~~~g~-----~~~~l~l~gH~DvVp~~~~~W~~~~~~~~Pf~~~~~~g~lyGRG~~D~Kgg~a~~l~a 165 (520)
T PRK06156 95 ----VDNRVLEIGLGGS-----GSDKVGILTHADVVPANPELWVLDGTRLDPFKVTLVGDRLYGRGTEDDKGAIVTALYA 165 (520)
T ss_pred ----cCCeEEEEEecCC-----CCCeEEEEEecCccCCCCccCccCCccCCCCceEEECCEEEEcCcccchHHHHHHHHH
Confidence 012444 677653 2368999999999973 27999999999999999
Q ss_pred HHHHHhcCCCCCceEEEEEeCCcCCCCCChHHHHhcCCccCCceEEEEeec
Q 002689 211 ARAMSQWAHGFKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAIDLEA 261 (892)
Q Consensus 211 ar~L~~~~~~p~~~I~flf~~aEE~gl~GS~~fv~~h~~~~~v~a~INLD~ 261 (892)
++.|.+.+.+++++|.|+|+.+||.|..|++.++.++. ....++|+|+
T Consensus 166 ~~~l~~~~~~~~~~i~~~~~~dEE~g~~G~~~~~~~~~---~~~~~~~~D~ 213 (520)
T PRK06156 166 MKAIKDSGLPLARRIELLVYTTEETDGDPLKYYLERYT---PPDYNITLDA 213 (520)
T ss_pred HHHHHHcCCCCCceEEEEEecccccCchhHHHHHHhcC---CCCeEEeeCC
Confidence 99999888778899999999999999999999996543 2356677775
No 49
>PRK15026 aminoacyl-histidine dipeptidase; Provisional
Probab=99.09 E-value=1.7e-09 Score=126.97 Aligned_cols=138 Identities=20% Similarity=0.319 Sum_probs=105.4
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhccccCCceeEEEEEEeccCCcccccccccccccccccccc
Q 002689 84 FSEFEAIKHVKALTELGPHPVGSDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDLN 163 (892)
Q Consensus 84 fs~erA~~~L~~L~~igpr~vGS~~~~~a~~yL~~~l~~ig~~a~~~~~ve~d~~~~~~g~~~~~g~~~~~~~~~y~~~~ 163 (892)
...+++++.+++|++| |++.+ ..+++.+|+.++++++|. +++.+ ...
T Consensus 7 ~~~~~~~~~l~~Lv~i-ps~S~--~e~~~~~~l~~~~~~~G~------~~~~d------------------------~~g 53 (485)
T PRK15026 7 LSPQPLWDIFAKICSI-PHPSY--HEEQLAEYIVGWAKEKGF------HVERD------------------------QVG 53 (485)
T ss_pred cCHHHHHHHHHHHhCC-CCCCC--CHHHHHHHHHHHHHhCCC------EEEEE------------------------ecC
Confidence 4578899999999997 56544 445899999999999983 44443 236
Q ss_pred eEEEEEcCCCCCcCCCCEEEEeeecccccC------------------------CCCC---CCchhHHHHHHHHHHHHHh
Q 002689 164 HIVLRIQPKYASEAAENAILVSSHIDTVFA------------------------AEGA---GDCSSCVAVMLELARAMSQ 216 (892)
Q Consensus 164 NVi~~i~g~~~~~~~~~~VLl~AH~DSv~~------------------------spGA---~Dd~sgva~mLE~ar~L~~ 216 (892)
|+++++++.. +....+.|++.+|+|+|+. ++|+ .|+++|+|++|++++ +
T Consensus 54 nvi~~~~~~~-g~~~~~~v~l~gH~DtV~~~~~~~~~~w~~~P~~~~i~~~~l~g~Gt~lgaD~k~gva~~l~~l~---~ 129 (485)
T PRK15026 54 NILIRKPATA-GMENRKPVVLQAHLDMVPQKNNDTVHDFTKDPIQPYIDGEWVKARGTTLGADNGIGMASALAVLA---D 129 (485)
T ss_pred eEEEEEcCCC-CCCCCCEEEEEeeecccCCCCCCccccCCCCCceEEEcCCEEEeCCccccCccHHHHHHHHHHHH---h
Confidence 9999886531 1134578999999999974 1777 499999999998763 3
Q ss_pred cCCCCCceEEEEEeCCcCCCCCChHHHHhcCCccCCceEEEEeecc
Q 002689 217 WAHGFKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAIDLEAM 262 (892)
Q Consensus 217 ~~~~p~~~I~flf~~aEE~gl~GS~~fv~~h~~~~~v~a~INLD~~ 262 (892)
.+. ++.+|.++|+.+||.|+.||+.+.. .+ .+.+++||+|..
T Consensus 130 ~~~-~~~~i~~l~t~dEE~G~~ga~~l~~--~~-~~~~~~i~~e~~ 171 (485)
T PRK15026 130 ENV-VHGPLEVLLTMTEEAGMDGAFGLQS--NW-LQADILINTDSE 171 (485)
T ss_pred CCC-CCCCEEEEEEcccccCcHhHHHhhh--cc-CCcCEEEEeCCC
Confidence 333 3678999999999999999999863 22 457899999875
No 50
>PRK07318 dipeptidase PepV; Reviewed
Probab=99.08 E-value=1.2e-09 Score=127.61 Aligned_cols=127 Identities=16% Similarity=0.189 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHHhcCCCCCC---------CHHHHHHHHHHHHHHHhhccccCCceeEEEEEEeccCCccccccccccccc
Q 002689 86 EFEAIKHVKALTELGPHPVG---------SDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRT 156 (892)
Q Consensus 86 ~erA~~~L~~L~~igpr~vG---------S~~~~~a~~yL~~~l~~ig~~a~~~~~ve~d~~~~~~g~~~~~g~~~~~~~ 156 (892)
.+++.+.|++|.+|..-..+ -.++.++.+|+.+.++++|. +++.
T Consensus 13 ~~~~~~~l~~lv~i~S~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~G~------~~~~--------------------- 65 (466)
T PRK07318 13 KDDLIEDLQELLRINSVRDDSKAKEGAPFGPGPVKALEKFLEIAERDGF------KTKN--------------------- 65 (466)
T ss_pred HHHHHHHHHHHhccCcccCCcccccCCCCCccHHHHHHHHHHHHHHCCC------EEEE---------------------
Confidence 36788899999998432111 12345899999999999883 2221
Q ss_pred ccccccceEEEEEcCCCCCcCCCCEEEEeeecccccC-------------------CCCCCCchhHHHHHHHHHHHHHhc
Q 002689 157 LIYSDLNHIVLRIQPKYASEAAENAILVSSHIDTVFA-------------------AEGAGDCSSCVAVMLELARAMSQW 217 (892)
Q Consensus 157 ~~y~~~~NVi~~i~g~~~~~~~~~~VLl~AH~DSv~~-------------------spGA~Dd~sgva~mLE~ar~L~~~ 217 (892)
..|+++++... ...+.|++++|+|+||. ++|+.|+++|+++++.+++.|.+.
T Consensus 66 -----~~n~~~~~~~~----~~~~~l~l~gH~DvVp~~~~W~~~Pf~~~~~dg~lyGRG~~DmKgg~aa~l~Al~~l~~~ 136 (466)
T PRK07318 66 -----VDNYAGHIEYG----EGEEVLGILGHLDVVPAGDGWDTDPYEPVIKDGKIYARGTSDDKGPTMAAYYALKIIKEL 136 (466)
T ss_pred -----ecCccceEEEC----CCCCEEEEEEecCCCCCCCCCCCCCcceEEECCEEEEcccccCcHHHHHHHHHHHHHHHc
Confidence 12555555421 13357999999999974 389999999999999999999988
Q ss_pred CCCCCceEEEEEeCCcCCCCCChHHHHhcCC
Q 002689 218 AHGFKNAVIFLFNTGEEEGLNGAHSFVTQHP 248 (892)
Q Consensus 218 ~~~p~~~I~flf~~aEE~gl~GS~~fv~~h~ 248 (892)
+.+++.+|.|+|..+||.|..|++.++++++
T Consensus 137 g~~~~~~i~l~~~~DEE~g~~G~~~l~~~~~ 167 (466)
T PRK07318 137 GLPLSKKVRFIVGTDEESGWKCMDYYFEHEE 167 (466)
T ss_pred CCCCCccEEEEEEcccccCchhHHHHHHhCC
Confidence 8778889999999999999999999997664
No 51
>PRK00466 acetyl-lysine deacetylase; Validated
Probab=99.07 E-value=1.5e-09 Score=121.77 Aligned_cols=129 Identities=19% Similarity=0.174 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhccccCCceeEEEEEEeccCCcccccccccccccccccccceE
Q 002689 86 EFEAIKHVKALTELGPHPVGSDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDLNHI 165 (892)
Q Consensus 86 ~erA~~~L~~L~~igpr~vGS~~~~~a~~yL~~~l~~ig~~a~~~~~ve~d~~~~~~g~~~~~g~~~~~~~~~y~~~~NV 165 (892)
.+++.+.|++|.+|.. .|.+++++.+||.++|+++|. +++.+ ...|+
T Consensus 9 ~~~~~~~l~~lv~i~s---~s~~e~~~~~~l~~~l~~~g~------~~~~~------------------------~~~~~ 55 (346)
T PRK00466 9 KQKAKELLLDLLSIYT---PSGNETNATKFFEKISNELNL------KLEIL------------------------PDSNS 55 (346)
T ss_pred HHHHHHHHHHHhcCCC---CCCCHHHHHHHHHHHHHHcCC------eEEEe------------------------cCCCc
Confidence 3689999999999832 344556899999999999983 33332 11344
Q ss_pred EEEEcCCCCCcCCCCEEEEeeecccccC------------CCCCCCchhHHHHHHHHHHHHHhcCCCCCceEEEEEeCCc
Q 002689 166 VLRIQPKYASEAAENAILVSSHIDTVFA------------AEGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGE 233 (892)
Q Consensus 166 i~~i~g~~~~~~~~~~VLl~AH~DSv~~------------spGA~Dd~sgva~mLE~ar~L~~~~~~p~~~I~flf~~aE 233 (892)
++ .|. +.|++++|+||||. ++|+.|+++|+|++|++++.|.+.+ .+|.|+|..+|
T Consensus 56 ~~--~g~-------~~lll~gH~DtVp~~~~~~~~~g~iyGrG~~DmKgg~aa~l~a~~~l~~~~----~~i~~~~~~dE 122 (346)
T PRK00466 56 FI--LGE-------GDILLASHVDTVPGYIEPKIEGEVIYGRGAVDAKGPLISMIIAAWLLNEKG----IKVMVSGLADE 122 (346)
T ss_pred Ee--cCC-------CeEEEEeccccCCCCCCceeeCCEEEecCccccchHHHHHHHHHHHHHHcC----CCEEEEEEcCc
Confidence 42 231 35999999999985 3999999999999999999998764 35899999999
Q ss_pred CCCCCChHHHHhcCCccCCceEEEEeeccc
Q 002689 234 EEGLNGAHSFVTQHPWSTTIRVAIDLEAMG 263 (892)
Q Consensus 234 E~gl~GS~~fv~~h~~~~~v~a~INLD~~G 263 (892)
|.|..|++.+++++ . +...+|..|..+
T Consensus 123 E~g~~G~~~l~~~~-~--~~d~~i~~ep~~ 149 (346)
T PRK00466 123 ESTSIGAKELVSKG-F--NFKHIIVGEPSN 149 (346)
T ss_pred ccCCccHHHHHhcC-C--CCCEEEEcCCCC
Confidence 99989999999654 2 345666666543
No 52
>PRK07205 hypothetical protein; Provisional
Probab=99.07 E-value=1.5e-09 Score=126.01 Aligned_cols=127 Identities=17% Similarity=0.180 Sum_probs=97.8
Q ss_pred CHHHHHHHHHHHHhcCCCCCCC--------HHHHHHHHHHHHHHHhhccccCCceeEEEEEEeccCCccccccccccccc
Q 002689 85 SEFEAIKHVKALTELGPHPVGS--------DALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRT 156 (892)
Q Consensus 85 s~erA~~~L~~L~~igpr~vGS--------~~~~~a~~yL~~~l~~ig~~a~~~~~ve~d~~~~~~g~~~~~g~~~~~~~ 156 (892)
+.+++.+.|++|.+|.. ..+. ++-.++.+|+.+.++++|. +++.+ .
T Consensus 9 ~~~~~~~~l~~lv~i~S-~s~~~~~~~~~~~~~~~~~~~~~~~l~~~g~------~~~~~--~----------------- 62 (444)
T PRK07205 9 VQDACVAAIKTLVSYPS-VLNEGENGTPFGQAIQDVLEATLDLCQGLGF------KTYLD--P----------------- 62 (444)
T ss_pred hHHHHHHHHHHHccccc-ccCCCcCCCCCchhHHHHHHHHHHHHHhCCC------EEEEc--C-----------------
Confidence 56788899999998732 1111 1235788999999999873 33332 0
Q ss_pred ccccccceEEEEEcCCCCCcCCCCEEEEeeecccccC---------------------CCCCCCchhHHHHHHHHHHHHH
Q 002689 157 LIYSDLNHIVLRIQPKYASEAAENAILVSSHIDTVFA---------------------AEGAGDCSSCVAVMLELARAMS 215 (892)
Q Consensus 157 ~~y~~~~NVi~~i~g~~~~~~~~~~VLl~AH~DSv~~---------------------spGA~Dd~sgva~mLE~ar~L~ 215 (892)
...++++++ |. ..+.|++++|+|+||. ++|+.|++.|+|++|++++.|.
T Consensus 63 ----~~~~~~~~~-g~-----~~~~lll~gH~DvVp~~~~~~W~~~Pf~~~v~dg~lyGRGa~DmKgglaa~l~Al~~l~ 132 (444)
T PRK07205 63 ----KGYYGYAEI-GQ-----GEELLAILCHLDVVPEGDLSDWQTPPFEAVEKDGCLFGRGTQDDKGPSMAALYAVKALL 132 (444)
T ss_pred ----CCeEEEEEe-cC-----CCcEEEEEEeeccCCCCCcccCCCCCCceEEECCEEEECCcccCcHHHHHHHHHHHHHH
Confidence 113556665 42 2467999999999985 3899999999999999999999
Q ss_pred hcCCCCCceEEEEEeCCcCCCCCChHHHHhcC
Q 002689 216 QWAHGFKNAVIFLFNTGEEEGLNGAHSFVTQH 247 (892)
Q Consensus 216 ~~~~~p~~~I~flf~~aEE~gl~GS~~fv~~h 247 (892)
+.+.+++++|.|+|.++||.|..|++.|+...
T Consensus 133 ~~~~~~~~~i~l~~~~dEE~g~~g~~~~~~~~ 164 (444)
T PRK07205 133 DAGVQFNKRIRFIFGTDEETLWRCMNRYNEVE 164 (444)
T ss_pred HcCCCCCCcEEEEEECCcccCcccHHHHHhCC
Confidence 98888889999999999999999999998644
No 53
>TIGR01882 peptidase-T peptidase T. This model represents a tripeptide aminopeptidase known as Peptidase T, which has a substrate preference for hydrophobic peptides.
Probab=99.06 E-value=1.6e-09 Score=124.58 Aligned_cols=128 Identities=16% Similarity=0.171 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHhcCCCCC-------CCHHHHHHHHHHHHHHHhhccccCCceeEEEEEEeccCCcccccccccccccccc
Q 002689 87 FEAIKHVKALTELGPHPV-------GSDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIY 159 (892)
Q Consensus 87 erA~~~L~~L~~igpr~v-------GS~~~~~a~~yL~~~l~~ig~~a~~~~~ve~d~~~~~~g~~~~~g~~~~~~~~~y 159 (892)
+|+.+.+-++++|....- .+.+.++.+++|.++|+++|.+ ++++| +
T Consensus 3 ~~~~~~f~~~~~i~s~s~~~~~~~ps~~~~~~~a~~l~~~l~~lG~~-----~v~~d------------~---------- 55 (410)
T TIGR01882 3 EELLPRFLTYVKVNTRSDENSDTCPSTPGQLTFGNMLVDDLKSLGLQ-----DAHYD------------E---------- 55 (410)
T ss_pred hHHHHHHHhhEEEecccCCCCCCCCCCHhHHHHHHHHHHHHHHcCCc-----eEEEc------------C----------
Confidence 688888888888743221 2234557999999999999941 25554 0
Q ss_pred cccceEEEEEcCCCCCcCCCCEEEEeeecccccC----------------------------------------------
Q 002689 160 SDLNHIVLRIQPKYASEAAENAILVSSHIDTVFA---------------------------------------------- 193 (892)
Q Consensus 160 ~~~~NVi~~i~g~~~~~~~~~~VLl~AH~DSv~~---------------------------------------------- 193 (892)
+..||+++++|.. ....+.|++.||+|||+.
T Consensus 56 -~~gnv~~~~~~~~--~~~~~~i~~~aHmDTv~~~~~~v~p~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~ 132 (410)
T TIGR01882 56 -KNGYVIATIPSNT--DKDVPTIGFLAHVDTADFNGENVNPQIIENYDGESIIQLGDLEFTLDPDQFPNLSGYKGQTLIT 132 (410)
T ss_pred -CceEEEEEecCCC--CCCCCEEEEEEecccCcCCCCCCCCEEEecCCCceeeecCCCCeEEChHhChhHHhccCceEEE
Confidence 3589999998752 112388999999999973
Q ss_pred CCC----CCCchhHHHHHHHHHHHHHhcCCCCCceEEEEEeCCcCCCCCChHHHHh
Q 002689 194 AEG----AGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEEEGLNGAHSFVT 245 (892)
Q Consensus 194 spG----A~Dd~sgva~mLE~ar~L~~~~~~p~~~I~flf~~aEE~gl~GS~~fv~ 245 (892)
+.| +.||++|+|+||++++.|.+.+..++.+|.|+|..+||.| .|++.+..
T Consensus 133 ~~g~~l~G~D~KgglAa~l~A~~~L~e~~~~~~g~I~~~ft~dEE~g-~Ga~~l~~ 187 (410)
T TIGR01882 133 TDGTTLLGADDKAGIAEIMTAADYLINHPEIKHGTIRVAFTPDEEIG-RGAHKFDV 187 (410)
T ss_pred cCCCEeecccCHHHHHHHHHHHHHHHhCCCCCCCCEEEEEECcccCC-cCcchhhh
Confidence 111 2799999999999999998753345779999999999987 59988863
No 54
>PRK08652 acetylornithine deacetylase; Provisional
Probab=99.06 E-value=1.7e-09 Score=120.69 Aligned_cols=130 Identities=26% Similarity=0.301 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhccccCCceeEEEEEEeccCCcccccccccccccccccccceEE
Q 002689 87 FEAIKHVKALTELGPHPVGSDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDLNHIV 166 (892)
Q Consensus 87 erA~~~L~~L~~igpr~vGS~~~~~a~~yL~~~l~~ig~~a~~~~~ve~d~~~~~~g~~~~~g~~~~~~~~~y~~~~NVi 166 (892)
|++.+.+++|.++ |-+ |.++.++.+||.++|+++|. +++.+. . + +..|++
T Consensus 2 ~~~~~~~~~lv~i-ps~--s~~e~~~~~~l~~~l~~~G~------~v~~~~--~--------~-----------~~~~~~ 51 (347)
T PRK08652 2 ERAKELLKQLVKI-PSP--SGQEDEIALHIMEFLESLGY------DVHIES--D--------G-----------EVINIV 51 (347)
T ss_pred hhHHHHHHHHhcC-CCC--CCchHHHHHHHHHHHHHcCC------EEEEEe--c--------C-----------ceeEEE
Confidence 6889999999997 223 33456899999999999983 343321 1 1 235666
Q ss_pred EEEcCCCCCcCCCCEEEEeeecccccC------------CCCCCCchhHHHHHHHHHHHHHhcCCCCCceEEEEEeCCcC
Q 002689 167 LRIQPKYASEAAENAILVSSHIDTVFA------------AEGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEE 234 (892)
Q Consensus 167 ~~i~g~~~~~~~~~~VLl~AH~DSv~~------------spGA~Dd~sgva~mLE~ar~L~~~~~~p~~~I~flf~~aEE 234 (892)
+ +. .+.|++.+|+|+||. ++|+.|+++|+|+||++++.|.+. .++.+|.|+|..+||
T Consensus 52 ~---~~------~~~i~l~~H~D~vp~~~~~~~~~g~iyGrG~~D~Kg~~a~~l~a~~~l~~~--~~~~~v~~~~~~dEE 120 (347)
T PRK08652 52 V---NS------KAELFVEVHYDTVPVRAEFFVDGVYVYGTGACDAKGGVAAILLALEELGKE--FEDLNVGIAFVSDEE 120 (347)
T ss_pred c---CC------CCEEEEEccccccCCCCCCEEECCEEEeccchhhhHHHHHHHHHHHHHhhc--ccCCCEEEEEecCcc
Confidence 5 32 357999999999985 489999999999999999999864 346799999999999
Q ss_pred CCCCChHHHHhcCCccCCceEEEEeec
Q 002689 235 EGLNGAHSFVTQHPWSTTIRVAIDLEA 261 (892)
Q Consensus 235 ~gl~GS~~fv~~h~~~~~v~a~INLD~ 261 (892)
.|..|++.+++++. ...+|..|.
T Consensus 121 ~g~~G~~~~~~~~~----~d~~i~~ep 143 (347)
T PRK08652 121 EGGRGSALFAERYR----PKMAIVLEP 143 (347)
T ss_pred cCChhHHHHHHhcC----CCEEEEecC
Confidence 98899999996643 146666664
No 55
>PRK05111 acetylornithine deacetylase; Provisional
Probab=99.05 E-value=2.4e-09 Score=121.40 Aligned_cols=139 Identities=20% Similarity=0.216 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHhcCCCCCCCH-----HHHHHHHHHHHHHHhhccccCCceeEEEEEEeccCCcccccccccccccccccc
Q 002689 87 FEAIKHVKALTELGPHPVGSD-----ALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSD 161 (892)
Q Consensus 87 erA~~~L~~L~~igpr~vGS~-----~~~~a~~yL~~~l~~ig~~a~~~~~ve~d~~~~~~g~~~~~g~~~~~~~~~y~~ 161 (892)
+++.+.+++|.++. -..+.+ ++.++.+||.+.|+++|. +++.+. .. + ..+
T Consensus 5 ~~~i~~l~~lv~i~-s~s~~e~~~~~~~~~~~~~l~~~l~~~g~------~~~~~~--~~-------~---------~~~ 59 (383)
T PRK05111 5 PSFIEMYRALIATP-SISATDPALDQSNRAVIDLLAGWFEDLGF------NVEIQP--VP-------G---------TRG 59 (383)
T ss_pred hHHHHHHHHHhCcC-CcCCCCcccccchHHHHHHHHHHHHHCCC------eEEEEe--cC-------C---------CCC
Confidence 47889999999872 222221 235799999999999983 343321 10 0 003
Q ss_pred cceEEEEEcCCCCCcCCCCEEEEeeecccccC--------------------CCCCCCchhHHHHHHHHHHHHHhcCCCC
Q 002689 162 LNHIVLRIQPKYASEAAENAILVSSHIDTVFA--------------------AEGAGDCSSCVAVMLELARAMSQWAHGF 221 (892)
Q Consensus 162 ~~NVi~~i~g~~~~~~~~~~VLl~AH~DSv~~--------------------spGA~Dd~sgva~mLE~ar~L~~~~~~p 221 (892)
..|+++++ |. ..+.|++.+|+|+||. ++|+.|++++++++|++++.|.+. .+
T Consensus 60 ~~nvia~~-g~-----~~~~il~~~H~Dvvp~~~~~W~~~Pf~~~~~~g~i~GrG~~D~Kg~~a~~l~a~~~l~~~--~~ 131 (383)
T PRK05111 60 KFNLLASL-GS-----GEGGLLLAGHTDTVPFDEGRWTRDPFTLTEHDGKLYGLGTADMKGFFAFILEALRDIDLT--KL 131 (383)
T ss_pred CceEEEEe-CC-----CCCeEEEEeeeceecCCCCcCcCCCCccEEECCEEEecccccccHHHHHHHHHHHHHhhc--CC
Confidence 47999998 43 1236999999999973 389999999999999999999864 35
Q ss_pred CceEEEEEeCCcCCCCCChHHHHhcCCccCCceEEEEee
Q 002689 222 KNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAIDLE 260 (892)
Q Consensus 222 ~~~I~flf~~aEE~gl~GS~~fv~~h~~~~~v~a~INLD 260 (892)
+++|+|+|.++||.|..|++.++++.... ...+|.-|
T Consensus 132 ~~~i~~~~~~~EE~g~~G~~~~~~~~~~~--~d~~i~~e 168 (383)
T PRK05111 132 KKPLYILATADEETSMAGARAFAEATAIR--PDCAIIGE 168 (383)
T ss_pred CCCeEEEEEeccccCcccHHHHHhcCCCC--CCEEEEcC
Confidence 68899999999999989999999654322 23444444
No 56
>PRK13009 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=99.04 E-value=2.3e-09 Score=121.08 Aligned_cols=137 Identities=17% Similarity=0.172 Sum_probs=100.9
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhccccCCceeEEEEEEeccCCcccccccccccccccccccceEEE
Q 002689 88 EAIKHVKALTELGPHPVGSDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDLNHIVL 167 (892)
Q Consensus 88 rA~~~L~~L~~igpr~vGS~~~~~a~~yL~~~l~~ig~~a~~~~~ve~d~~~~~~g~~~~~g~~~~~~~~~y~~~~NVi~ 167 (892)
++.+.+++|.++ +.-|..+.++.+||.+.|+++|. +++.. .. .+..|+++
T Consensus 3 ~~~~~l~~Lv~i---ps~s~~e~~~~~~l~~~l~~~G~------~~~~~--~~-------------------~~~~n~~~ 52 (375)
T PRK13009 3 DVLELAQDLIRR---PSVTPDDAGCQDLLAERLEALGF------TCERM--DF-------------------GDVKNLWA 52 (375)
T ss_pred hHHHHHHHHhCC---CCCCCchhhHHHHHHHHHHHcCC------eEEEe--cc-------------------CCCcEEEE
Confidence 567788889886 23344556889999999999883 33221 11 03479999
Q ss_pred EEcCCCCCcCCCCEEEEeeecccccC---------------------CCCCCCchhHHHHHHHHHHHHHhcCCCCCceEE
Q 002689 168 RIQPKYASEAAENAILVSSHIDTVFA---------------------AEGAGDCSSCVAVMLELARAMSQWAHGFKNAVI 226 (892)
Q Consensus 168 ~i~g~~~~~~~~~~VLl~AH~DSv~~---------------------spGA~Dd~sgva~mLE~ar~L~~~~~~p~~~I~ 226 (892)
++ |. ..+.|++.+|+|+||. ++|+.|+++|++++|++++.+.+.+.+++++|+
T Consensus 53 ~~-g~-----~~~~i~l~~H~D~Vp~g~~~~w~~~Pf~~~~~~g~iyGrG~~D~Kgg~aa~l~a~~~l~~~~~~~~~~i~ 126 (375)
T PRK13009 53 RR-GT-----EGPHLCFAGHTDVVPPGDLEAWTSPPFEPTIRDGMLYGRGAADMKGSLAAFVVAAERFVAAHPDHKGSIA 126 (375)
T ss_pred Ee-cC-----CCCEEEEEeecccCCCCCcccCCCCCCCcEEECCEEEecCCccChHHHHHHHHHHHHHHHhcCCCCceEE
Confidence 87 43 3478999999999985 268999999999999999999887777889999
Q ss_pred EEEeCCcCCC-CCChHHHHhcCCc-cCCceEEEEee
Q 002689 227 FLFNTGEEEG-LNGAHSFVTQHPW-STTIRVAIDLE 260 (892)
Q Consensus 227 flf~~aEE~g-l~GS~~fv~~h~~-~~~v~a~INLD 260 (892)
|+|..+||.+ ..|++.+++.... .....++|..|
T Consensus 127 ~~~~~~EE~~~~~G~~~~~~~~~~~~~~~d~~i~~e 162 (375)
T PRK13009 127 FLITSDEEGPAINGTVKVLEWLKARGEKIDYCIVGE 162 (375)
T ss_pred EEEEeecccccccCHHHHHHHHHHcCcCCCEEEEcC
Confidence 9999999975 4699988743211 12345555555
No 57
>PF01546 Peptidase_M20: Peptidase family M20/M25/M40 This family only corresponds to M20 family; InterPro: IPR002933 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of proteins contains the metallopeptidases and non-peptidase homologues (amidohydrolases) that belong to the MEROPS peptidase family M20 (clan MH) []. The peptidases of this clan have two catalytic zinc ions at the active site, bound by His/Asp, Asp, Glu, Asp/Glu and His. The catalysed reaction involves the release of an N-terminal amino acid, usually neutral or hydrophobic, from a polypeptide []. The peptidase M20 family has four sub-families: M20A - type example, glutamate carboxypeptidase from Pseudomonas sp. RS16 (P06621 from SWISSPROT) M20B - type example, peptidase T from Escherichia coli (P29745 from SWISSPROT) M20C - type example, X-His dipeptidase from E. coli (P15288 from SWISSPROT) M20D - type example, carboxypeptidase Ss1 from Sulfolobus solfataricus (P80092 from SWISSPROT) ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3T68_A 3T6M_A 2F8H_A 3GB0_A 3IO1_B 2ZOF_A 2ZOG_B 3MRU_B 3N5F_A 1Z2L_B ....
Probab=99.02 E-value=1.7e-09 Score=109.73 Aligned_cols=165 Identities=26% Similarity=0.328 Sum_probs=114.9
Q ss_pred EEeeecccccC-------------------CCCCCCchhHHHHHHHHHHHHHhcCCCCCceEEEEEeCCcCCCCC-ChHH
Q 002689 183 LVSSHIDTVFA-------------------AEGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEEEGLN-GAHS 242 (892)
Q Consensus 183 Ll~AH~DSv~~-------------------spGA~Dd~sgva~mLE~ar~L~~~~~~p~~~I~flf~~aEE~gl~-GS~~ 242 (892)
|+.+|+|+|+. ++|+.|++.++++++.+++.|.+.+.+++.+|+|+|..+||.|.. |++.
T Consensus 1 ll~~H~Dtv~~~~~w~~~pf~~~~~~~~~~grG~~D~k~~~~~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~g~~~ 80 (189)
T PF01546_consen 1 LLYAHMDTVPGPEGWKHDPFELSIEDGRLYGRGADDMKGGIAAMLAALKALKESGDDLPGNIIFLFTPDEEIGSIGGAKH 80 (189)
T ss_dssp EEEEES-BCSTGGGSSSSTTSEEEETTEEESTTTTTTHHHHHHHHHHHHHHHHTTTTCSSEEEEEEESTCCGTSTTHHHH
T ss_pred CccccccccCCcCcCCCCCcccEEECCEEEcCCcCCCcccHHHHHHHHHHHHhccccccccccccccccccCCCcchhhh
Confidence 68999999992 589999999999999999999988889999999999999999998 9999
Q ss_pred HHhcCC-ccCCceEEEEeecccCCCCcceeecCCChhHHHHHHHHccCCCCcchhhhccccCCCCCCCChHHHhh--cCC
Q 002689 243 FVTQHP-WSTTIRVAIDLEAMGIGGKSGLFQAGPHPWAVENFAAAAKYPSGQVTAQDLFASGAITSATDFQVYKE--VAG 319 (892)
Q Consensus 243 fv~~h~-~~~~v~a~INLD~~G~gG~~~lfq~g~~~~li~~~~~~a~~p~~~~l~~~~f~~g~ips~TD~~~F~~--~~G 319 (892)
++++.. ...+....+..|..+.+.-. ...++.+++...++.....+... .....+..||...+.+ ..+
T Consensus 81 l~~~~~~~~~~~~~~~~~e~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~g~tD~~~~~~~~~~~ 151 (189)
T PF01546_consen 81 LLEEGAFFGLHPDYVIIGEPTGKGGVG----SDNDPPLVQALQAAAQEVGGEPP-----EPVASGGGTDAGFLAEVKGLG 151 (189)
T ss_dssp HHHHCEEEEEEESEEEECECETTSEEE----HCTCHHHHHHHHHHHHHTTSSEE-----EEEEESSSSTHHHHHCHHHTT
T ss_pred hhhhccccccccccccccccccccccc----ccccHHHHHHHHHHHHHHhhccc-----cccceeccccchhhhhhhccc
Confidence 997631 12335666666654433210 22355566666555433332111 1113467899999995 468
Q ss_pred CeEEEEEeeCCCCCCCCCCcCcCCCCHHHHHHHHHHHHHHHH
Q 002689 320 LSGLDFAYTDKSAVYHTKNDKLDLLKPGSLQHLGENMLAFLL 361 (892)
Q Consensus 320 IPgld~a~~~~~~~YHT~~Dt~d~id~~sLq~~g~~~l~lv~ 361 (892)
+|.+.+.... ...|++. |+++.+.+....+.+..+++
T Consensus 152 ~~~i~~G~~~--~~~H~~~---E~i~~~~l~~~~~~~~~~l~ 188 (189)
T PF01546_consen 152 IPAIGFGPGG--SNAHTPD---EYIDIEDLVKGAKIYAALLE 188 (189)
T ss_dssp EEEEEEESCE--ESTTSTT----EEEHHHHHHHHHHHHHHHH
T ss_pred cceeeeCCCC--CCCCCCC---cEecHHHHHHHHHHHHHHHh
Confidence 8887665443 5788865 45567778777777776654
No 58
>TIGR03106 trio_M42_hydro hydrolase, peptidase M42 family. This model describes a subfamily of MEROPS peptidase family M42, a glutamyl aminopeptidase family that also includes the cellulase CelM from Clostridium thermocellum and deblocking aminopeptidases that can remove acylated amino acids. Members of this family occur in a three gene cassette with an amidotransferase (TIGR03104)in the asparagine synthase (glutamine-hydrolyzing) family, and a probable acetyltransferase (TIGR03103) in the GNAT family.
Probab=99.00 E-value=2.4e-08 Score=112.25 Aligned_cols=147 Identities=17% Similarity=0.192 Sum_probs=91.5
Q ss_pred CCCchhHHHHHHHHHHHHHhcCCCCCceEEEEEeCCcCCCCCChHHHHhcCCccCCceEEEEeecccC--------CCCc
Q 002689 197 AGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAIDLEAMGI--------GGKS 268 (892)
Q Consensus 197 A~Dd~sgva~mLE~ar~L~~~~~~p~~~I~flf~~aEE~gl~GS~~fv~~h~~~~~v~a~INLD~~G~--------gG~~ 268 (892)
+.||++||+++++++|.|.+.+.+++.+|+|+|+..||.| .|+. +....++..+|.+|.... .|+.
T Consensus 181 ~~D~K~G~a~~l~~~~~l~~~~~~~~~~v~~~~t~qEEvG-~gaa-----~~i~pd~a~~i~vd~~~~~p~~~~lg~Gp~ 254 (343)
T TIGR03106 181 HLDDKAGVAALLAALKAIVEHKVPLPVDVHPLFTITEEVG-SGAS-----HALPPDVAELVSVDNGTVAPGQNSSEHGVT 254 (343)
T ss_pred ecccHHhHHHHHHHHHHHHhcCCCCCceEEEEEECCcccC-ccch-----hcccHhhhccEEEEecccCCCCCcCCCCce
Confidence 3899999999999999999877678899999999999999 5632 112223334466664321 2333
Q ss_pred ceee-cC-C-ChhHHHHHHHHccCCCCcchhhhccccCCCCCCCChHHHhhc-CCCeEEEEEeeCCCCCCCCCCcCcCCC
Q 002689 269 GLFQ-AG-P-HPWAVENFAAAAKYPSGQVTAQDLFASGAITSATDFQVYKEV-AGLSGLDFAYTDKSAVYHTKNDKLDLL 344 (892)
Q Consensus 269 ~lfq-~g-~-~~~li~~~~~~a~~p~~~~l~~~~f~~g~ips~TD~~~F~~~-~GIPgld~a~~~~~~~YHT~~Dt~d~i 344 (892)
+... .+ + ++.+.+...+.++. .+.-...+++.. .+||-..+... .|+|...+..-- .+-|| .+.+
T Consensus 255 i~~~d~~~~~~~~l~~~l~~~A~~-~~Ip~Q~~~~~~----~gtDa~~~~~~~~Gi~t~~i~iP~--Ry~Hs----~e~~ 323 (343)
T TIGR03106 255 IAMADSSGPFDYHLTRKLIRLCQD-HGIPHRRDVFRY----YRSDAASAVEAGHDIRTALVTFGL--DASHG----YERT 323 (343)
T ss_pred EEEecCCCCCCHHHHHHHHHHHHH-cCCCcEEEecCC----CCChHHHHHHcCCCCCEEEeeccc--cchhh----hhhc
Confidence 3122 12 2 67777666555422 221112233321 36776665442 689988776421 13476 6778
Q ss_pred CHHHHHHHHHHHHHHH
Q 002689 345 KPGSLQHLGENMLAFL 360 (892)
Q Consensus 345 d~~sLq~~g~~~l~lv 360 (892)
+.+.++++.+.+.+++
T Consensus 324 ~~~D~~~~~~Ll~~~~ 339 (343)
T TIGR03106 324 HIDALEALANLLVAYA 339 (343)
T ss_pred cHHHHHHHHHHHHHHh
Confidence 8888888877666554
No 59
>COG0624 ArgE Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases [Amino acid transport and metabolism]
Probab=98.99 E-value=5.2e-09 Score=119.94 Aligned_cols=145 Identities=20% Similarity=0.222 Sum_probs=112.3
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhccccCCceeEEEEEEeccCCcccccccccccccccccccceEE
Q 002689 87 FEAIKHVKALTELGPHPVGSDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDLNHIV 166 (892)
Q Consensus 87 erA~~~L~~L~~igpr~vGS~~~~~a~~yL~~~l~~ig~~a~~~~~ve~d~~~~~~g~~~~~g~~~~~~~~~y~~~~NVi 166 (892)
+++.+.|++|.++.. +...+..++++|+.++|++++. .++.+.... + . +..|++
T Consensus 13 ~~~~~~l~~lv~~~s--~s~~~~~~~~~~l~~~l~~~g~------~~~~~~~~~--------~--------~--~~~n~~ 66 (409)
T COG0624 13 DDILELLKELVRIPS--VSAGEEAEAAELLAEWLEELGF------EVEEDEVGP--------G--------P--GRPNLV 66 (409)
T ss_pred HHHHHHHHHHhcCCC--CCcccchHHHHHHHHHHHHcCC------ceEEeecCC--------C--------C--CceEEE
Confidence 455678888888622 2235667999999999999883 333332111 0 0 246999
Q ss_pred EEEcCCCCCcCCCCEEEEeeecccccCC---------------------CCCCCchhHHHHHHHHHHHHHhcCCCCCceE
Q 002689 167 LRIQPKYASEAAENAILVSSHIDTVFAA---------------------EGAGDCSSCVAVMLELARAMSQWAHGFKNAV 225 (892)
Q Consensus 167 ~~i~g~~~~~~~~~~VLl~AH~DSv~~s---------------------pGA~Dd~sgva~mLE~ar~L~~~~~~p~~~I 225 (892)
+++.+. ..++.|++++|+|+||.+ +|+.|++.++++++.+++.+.+.+..++.+|
T Consensus 67 ~~~~~~----~~~~~l~l~~H~DvVP~g~~~~W~~~Pf~~~~~dg~lyGRG~~D~KG~~~a~l~A~~~l~~~~~~~~~~v 142 (409)
T COG0624 67 ARLGGG----DGGPTLLLGGHLDVVPAGGGEDWTTDPFEPTIKDGKLYGRGAADMKGGLAAALYALSALKAAGGELPGDV 142 (409)
T ss_pred EEecCC----CCCCeEEEeccccccCCCCcccCccCCCccEEECCEEEecCccccchHHHHHHHHHHHHHHhCCCCCeEE
Confidence 999875 233899999999999862 8999999999999999999999777889999
Q ss_pred EEEEeCCcCCCCCChHHHHhcCCc--cCCceEEEEeec
Q 002689 226 IFLFNTGEEEGLNGAHSFVTQHPW--STTIRVAIDLEA 261 (892)
Q Consensus 226 ~flf~~aEE~gl~GS~~fv~~h~~--~~~v~a~INLD~ 261 (892)
.+++.++||.|..|...++.++.. ..+..+.|..|.
T Consensus 143 ~~~~~~dEE~g~~~~~~~~~~~~~~~~~~~d~~i~~E~ 180 (409)
T COG0624 143 RLLFTADEESGGAGGKAYLEEGEEALGIRPDYEIVGEP 180 (409)
T ss_pred EEEEEeccccCCcchHHHHHhcchhhccCCCEEEeCCC
Confidence 999999999999999999866642 345667777776
No 60
>PRK08651 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=98.99 E-value=6.3e-09 Score=118.43 Aligned_cols=148 Identities=16% Similarity=0.194 Sum_probs=104.7
Q ss_pred CHHHHHHHHHHHHhcCCCCCC-C-HHHHHHHHHHHHHHHhhccccCCceeEEEEEEeccCCccccccccccccccccccc
Q 002689 85 SEFEAIKHVKALTELGPHPVG-S-DALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDL 162 (892)
Q Consensus 85 s~erA~~~L~~L~~igpr~vG-S-~~~~~a~~yL~~~l~~ig~~a~~~~~ve~d~~~~~~g~~~~~g~~~~~~~~~y~~~ 162 (892)
..+++.+.|++|.+|. .+. + .++.++.+||.++|+++|. +++.+. ...+. . ... ....
T Consensus 4 ~~~~~~~~l~~lv~i~--S~s~~~~~~~~~a~~l~~~l~~~G~------~~~~~~--~~~~~----~----~~~--~~~~ 63 (394)
T PRK08651 4 MMFDIVEFLKDLIKIP--TVNPPGENYEEIAEFLRDTLEELGF------STEIIE--VPNEY----V----KKH--DGPR 63 (394)
T ss_pred hHHHHHHHHHHHhcCC--ccCCCCcCHHHHHHHHHHHHHHcCC------eEEEEe--cCccc----c----ccc--cCCc
Confidence 3478899999999983 222 2 3345899999999999983 333321 11100 0 000 0124
Q ss_pred ceEEEEEcCCCCCcCCCCEEEEeeecccccC--------------------CCCCCCchhHHHHHHHHHHHHHhcCCCCC
Q 002689 163 NHIVLRIQPKYASEAAENAILVSSHIDTVFA--------------------AEGAGDCSSCVAVMLELARAMSQWAHGFK 222 (892)
Q Consensus 163 ~NVi~~i~g~~~~~~~~~~VLl~AH~DSv~~--------------------spGA~Dd~sgva~mLE~ar~L~~~~~~p~ 222 (892)
.|++++. +. .++.|++.+|+|+||. ++|+.|++.|++++|++++.+.+.+ +
T Consensus 64 ~~~~~~~-~~-----~~~~ill~~HlDtvp~~~~~~~~~Pf~~~~~~~~~~grG~~D~k~~~~~~l~a~~~l~~~~---~ 134 (394)
T PRK08651 64 PNLIARR-GS-----GNPHLHFNGHYDVVPPGEGWSVNVPFEPKVKDGKVYGRGASDMKGGIAALLAAFERLDPAG---D 134 (394)
T ss_pred ceEEEEe-CC-----CCceEEEEeeeeeecCCCCccccCCCCcEEECCEEEecCccccchHHHHHHHHHHHHHhcC---C
Confidence 6888865 32 2378999999999974 2788999999999999999998754 7
Q ss_pred ceEEEEEeCCcCCCCCChHHHHhcCCccCCceEEEEeeccc
Q 002689 223 NAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAIDLEAMG 263 (892)
Q Consensus 223 ~~I~flf~~aEE~gl~GS~~fv~~h~~~~~v~a~INLD~~G 263 (892)
++|.|+|..+||.|..|++.++++... +...++..|..|
T Consensus 135 ~~v~~~~~~~EE~g~~G~~~~~~~~~~--~~d~~i~~~~~~ 173 (394)
T PRK08651 135 GNIELAIVPDEETGGTGTGYLVEEGKV--TPDYVIVGEPSG 173 (394)
T ss_pred CCEEEEEecCccccchhHHHHHhccCC--CCCEEEEecCCC
Confidence 899999999999988999999966533 234566656444
No 61
>PRK08554 peptidase; Reviewed
Probab=98.99 E-value=6e-09 Score=120.98 Aligned_cols=141 Identities=16% Similarity=0.188 Sum_probs=102.6
Q ss_pred HHHHHHHHHHhcCCCCCC---CHHHHHHHHHHHHHHHhhccccCCceeEEEEEEeccCCcccccccccccccccccccce
Q 002689 88 EAIKHVKALTELGPHPVG---SDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDLNH 164 (892)
Q Consensus 88 rA~~~L~~L~~igpr~vG---S~~~~~a~~yL~~~l~~ig~~a~~~~~ve~d~~~~~~g~~~~~g~~~~~~~~~y~~~~N 164 (892)
++.+.|++|.+|.....+ ..+..++.+|+.+.++++|. +++.. .. + +..|
T Consensus 2 ~~~~~l~~LV~i~S~~~~~~~~~~~~~~~~~l~~~l~~~G~------~~~~~--~~--------~-----------~~~~ 54 (438)
T PRK08554 2 DVLELLSSLVSFETVNDPSKGIKPSKECPKFIKDTLESWGI------ESELI--EK--------D-----------GYYA 54 (438)
T ss_pred hHHHHHHHHhCCCCCCCcccCcchHHHHHHHHHHHHHHCCC------eEEEE--ec--------C-----------CceE
Confidence 467788999887331111 12346899999999999983 33221 11 0 2368
Q ss_pred EEEEEcCCCCCcCCCCEEEEeeecccccC--------------------CCCCCCchhHHHHHHHHHHHHHhcCCCCCce
Q 002689 165 IVLRIQPKYASEAAENAILVSSHIDTVFA--------------------AEGAGDCSSCVAVMLELARAMSQWAHGFKNA 224 (892)
Q Consensus 165 Vi~~i~g~~~~~~~~~~VLl~AH~DSv~~--------------------spGA~Dd~sgva~mLE~ar~L~~~~~~p~~~ 224 (892)
+++++ |. .++.|++.+|+|+||. ++|+.|+++|++++|.+++.|.+. .++++
T Consensus 55 l~~~~-~~-----~~~~l~l~gH~DtVp~~~~~w~~~Pf~~~~~~g~lyGrG~~DmKgg~aa~l~A~~~l~~~--~~~~~ 126 (438)
T PRK08554 55 VYGEI-GE-----GKPKLLFMAHFDVVPVNPEEWNTEPFKLTVKGDKAYGRGSADDKGNVASVMLALKELSKE--PLNGK 126 (438)
T ss_pred EEEEe-CC-----CCCEEEEEeccccCCCCccccccCCceeEEECCEEEECCcccchHHHHHHHHHHHHHHhc--CCCCC
Confidence 88886 32 2357999999999975 399999999999999999999864 36788
Q ss_pred EEEEEeCCcCCCCCChHHHHhcCC-ccCCceEEEEeeccc
Q 002689 225 VIFLFNTGEEEGLNGAHSFVTQHP-WSTTIRVAIDLEAMG 263 (892)
Q Consensus 225 I~flf~~aEE~gl~GS~~fv~~h~-~~~~v~a~INLD~~G 263 (892)
|.|+|+++||.|..++..+++... ......++|+.|..+
T Consensus 127 i~l~~~~dEE~g~~~~~~~~~~~~~~~~~~~~~iv~Ept~ 166 (438)
T PRK08554 127 VIFAFTGDEEIGGAMAMHIAEKLREEGKLPKYMINADGIG 166 (438)
T ss_pred EEEEEEcccccCccccHHHHHHHHhcCCCCCEEEEeCCCC
Confidence 999999999998877777664432 224567899999754
No 62
>TIGR01886 dipeptidase dipeptidase PepV. This model represents a small clade of dipeptidase enzymes which are members of the larger M25 subfamily of metalloproteases. Two characterized enzymes are included in the seed. One, from Lactococcus lactis has been shown to act on a wide range of dipeptides, but not larger peptides. The enzyme from Lactobacillus delbrueckii was originally characterized as a Xaa-His dipeptidase, specifically a carnosinase (beta-Ala-His) by complementation of an E. coli mutant. Further study, including the crystallization of the enzyme, has shown it to also be a non-specific dipeptidase. This group also includes enzymes from Streptococcus and Enterococcus.
Probab=98.98 E-value=4.4e-09 Score=123.01 Aligned_cols=126 Identities=14% Similarity=0.118 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHhcCCCCC---------CCHHHHHHHHHHHHHHHhhccccCCceeEEEEEEeccCCcccccccccccccc
Q 002689 87 FEAIKHVKALTELGPHPV---------GSDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTL 157 (892)
Q Consensus 87 erA~~~L~~L~~igpr~v---------GS~~~~~a~~yL~~~l~~ig~~a~~~~~ve~d~~~~~~g~~~~~g~~~~~~~~ 157 (892)
+++.+.|++|.+|..-.. ...+..++.+|+.+.++++|. +++..
T Consensus 13 ~~~~~~l~~lv~ipS~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~G~------~~~~~--------------------- 65 (466)
T TIGR01886 13 DALLEDLEELLRIDSSEDLENATEEYPFGPGPVDALTKFLSFAERDGF------TTKNF--------------------- 65 (466)
T ss_pred HHHHHHHHHHhCCCCcCCCCCCCccCCCChhHHHHHHHHHHHHHHCCC------eEEEe---------------------
Confidence 567888999988732110 013446789999999999983 33221
Q ss_pred cccccceEEEEEcCCCCCcCCCCEEEEeeecccccC-------------------CCCCCCchhHHHHHHHHHHHHHhcC
Q 002689 158 IYSDLNHIVLRIQPKYASEAAENAILVSSHIDTVFA-------------------AEGAGDCSSCVAVMLELARAMSQWA 218 (892)
Q Consensus 158 ~y~~~~NVi~~i~g~~~~~~~~~~VLl~AH~DSv~~-------------------spGA~Dd~sgva~mLE~ar~L~~~~ 218 (892)
.|+++++.+. .+++.|++.+|+|+||. ++|+.||+.|++++|.+++.|++.+
T Consensus 66 -----~~~~~~~~~~----~~~~~l~~~gH~DvVp~~~~W~~~Pf~~~~~dg~lyGRG~~D~Kg~~~a~l~a~~~l~~~~ 136 (466)
T TIGR01886 66 -----DNYAGHVEYG----AGDERLGIIGHMDVVPAGEGWTRDPFEPEIDEGRIYARGASDDKGPSLAAYYAMKILKELG 136 (466)
T ss_pred -----cCCceeEEec----CCCCEEEEEeecccCCCCCCCcCCCCCeEEECCEEEecCccccchHHHHHHHHHHHHHHhC
Confidence 1222222221 23568999999999975 4899999999999999999999888
Q ss_pred CCCCceEEEEEeCCcCCCCCChHHHHhcCC
Q 002689 219 HGFKNAVIFLFNTGEEEGLNGAHSFVTQHP 248 (892)
Q Consensus 219 ~~p~~~I~flf~~aEE~gl~GS~~fv~~h~ 248 (892)
.+++++|+|++..+||.|..|++.+++++.
T Consensus 137 ~~~~~~i~~~~~~dEE~g~~g~~~~~~~~~ 166 (466)
T TIGR01886 137 LPPSKKIRFVVGTNEETGWVDMDYYFKHEE 166 (466)
T ss_pred CCCCCCEEEEEECccccCcccHHHHHhcCc
Confidence 888999999999999999999999997654
No 63
>PRK13004 peptidase; Reviewed
Probab=98.98 E-value=7.8e-09 Score=118.26 Aligned_cols=136 Identities=17% Similarity=0.188 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhccccCCceeEEEEEEeccCCcccccccccccccccccccceE
Q 002689 86 EFEAIKHVKALTELGPHPVGSDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDLNHI 165 (892)
Q Consensus 86 ~erA~~~L~~L~~igpr~vGS~~~~~a~~yL~~~l~~ig~~a~~~~~ve~d~~~~~~g~~~~~g~~~~~~~~~y~~~~NV 165 (892)
.+++.+.+++|.++ |- -|.++.++.+||.++|+++|.+ .++++ ...|+
T Consensus 14 ~~~~~~~l~~lv~i-ps--~s~~e~~~a~~l~~~l~~~G~~-----~~~~~------------------------~~~n~ 61 (399)
T PRK13004 14 KADMTRFLRDLIRI-PS--ESGDEKRVVKRIKEEMEKVGFD-----KVEID------------------------PMGNV 61 (399)
T ss_pred HHHHHHHHHHHhcC-CC--CCCchHHHHHHHHHHHHHcCCc-----EEEEc------------------------CCCeE
Confidence 35788999999986 22 2334567899999999999831 11111 22589
Q ss_pred EEEEcCCCCCcCCCCEEEEeeecccccC---------------------CCCCCCchhHHHHHHHHHHHHHhcCCCCCce
Q 002689 166 VLRIQPKYASEAAENAILVSSHIDTVFA---------------------AEGAGDCSSCVAVMLELARAMSQWAHGFKNA 224 (892)
Q Consensus 166 i~~i~g~~~~~~~~~~VLl~AH~DSv~~---------------------spGA~Dd~sgva~mLE~ar~L~~~~~~p~~~ 224 (892)
++++.|. .+.|++.+|+|+|+. ++|+.||++|++++|.+++.|.+.+..++.+
T Consensus 62 ~a~~~~~------~~~i~~~~H~DtVp~~~~~~w~~~P~~~~~~~g~lyGrG~~D~Kg~~aa~l~a~~~l~~~~~~~~~~ 135 (399)
T PRK13004 62 LGYIGHG------KKLIAFDAHIDTVGIGDIKNWDFDPFEGEEDDGRIYGRGTSDQKGGMASMVYAAKIIKDLGLDDEYT 135 (399)
T ss_pred EEEECCC------CcEEEEEeccCccCCCChhhcccCCCccEEECCEEEeCCccccchHHHHHHHHHHHHHhcCCCCCCe
Confidence 9988542 267999999999985 2689999999999999999999887778899
Q ss_pred EEEEEeCCcCC-CCCChHHHHhcCCccCCceEEEEeec
Q 002689 225 VIFLFNTGEEE-GLNGAHSFVTQHPWSTTIRVAIDLEA 261 (892)
Q Consensus 225 I~flf~~aEE~-gl~GS~~fv~~h~~~~~v~a~INLD~ 261 (892)
|.|+|..+||. +..|++.++++... +...++..|.
T Consensus 136 i~~~~~~~EE~~~g~~~~~~~~~~~~--~~d~~i~~e~ 171 (399)
T PRK13004 136 LYVTGTVQEEDCDGLCWRYIIEEDKI--KPDFVVITEP 171 (399)
T ss_pred EEEEEEcccccCcchhHHHHHHhcCC--CCCEEEEccC
Confidence 99999999995 45678887754222 2344555453
No 64
>TIGR01902 dapE-lys-deAc N-acetyl-ornithine/N-acetyl-lysine deacetylase. This clade of mainly archaeal and related bacterial species contains two characterized enzymes, an deacetylase with specificity for both N-acetyl-ornithine and N-acetyl-lysine from Thermus which is found within a lysine biosynthesis operon, and a fusion protein with acetyl-glutamate kinase (an enzyme of ornithine biosynthesis) from Lactobacillus. It is possible that all of the sequences within this clade have dual specificity, or that a mix of specificities have evolved within this clade.
Probab=98.95 E-value=6e-09 Score=116.35 Aligned_cols=125 Identities=22% Similarity=0.260 Sum_probs=94.4
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhccccCCceeEEEEEEeccCCcccccccccccccccccccceEEEEEcC
Q 002689 92 HVKALTELGPHPVGSDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDLNHIVLRIQP 171 (892)
Q Consensus 92 ~L~~L~~igpr~vGS~~~~~a~~yL~~~l~~ig~~a~~~~~ve~d~~~~~~g~~~~~g~~~~~~~~~y~~~~NVi~~i~g 171 (892)
.|++|.++ |-+.| .++++.+||.++|+++|. +++.+ ...|+++.. +
T Consensus 2 ~l~~lv~i-~s~s~--~e~~~~~~l~~~l~~~g~------~~~~~------------------------~~~~~~~~~-~ 47 (336)
T TIGR01902 2 LLKDLLEI-YSPSG--KEANAAKFLEEISKDLGL------KLIID------------------------DAGNFILGK-G 47 (336)
T ss_pred hHHHHhcC-CCCCc--chHHHHHHHHHHHHHcCC------EEEEC------------------------CCCcEEEEe-C
Confidence 47788886 33333 346899999999999983 23211 224777764 3
Q ss_pred CCCCcCCCCEEEEeeecccccC------------CCCCCCchhHHHHHHHHHHHHHhcCCCCCceEEEEEeCCcCCCCCC
Q 002689 172 KYASEAAENAILVSSHIDTVFA------------AEGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEEEGLNG 239 (892)
Q Consensus 172 ~~~~~~~~~~VLl~AH~DSv~~------------spGA~Dd~sgva~mLE~ar~L~~~~~~p~~~I~flf~~aEE~gl~G 239 (892)
. +.+.|++++|+|+||. ++|+.|+++|+|+||++++.|.+. ..+|+|++..+||.|..|
T Consensus 48 ~-----~~~~i~~~~H~D~vp~~~~~~~~~g~i~GrG~~D~Kg~~aa~l~a~~~l~~~----~~~i~~~~~~dEE~g~~G 118 (336)
T TIGR01902 48 D-----GHKKILLAGHVDTVPGYIPVKIEGGLLYGRGAVDAKGPLIAMIFATWLLNEK----GIKVIVSGLVDEESSSKG 118 (336)
T ss_pred C-----CCceEEEEccccccCCCcccEEeCCEEEEecccCCCcHHHHHHHHHHHHHhC----CCcEEEEEEeCcccCCcc
Confidence 2 3478999999999973 489999999999999999999764 358999999999999999
Q ss_pred hHHHHhcCCccCCceEEEEeeccc
Q 002689 240 AHSFVTQHPWSTTIRVAIDLEAMG 263 (892)
Q Consensus 240 S~~fv~~h~~~~~v~a~INLD~~G 263 (892)
++.+++++. . .++|..|..+
T Consensus 119 ~~~~~~~~~--~--~~~ii~ept~ 138 (336)
T TIGR01902 119 AREVIDKNY--P--FYVIVGEPSG 138 (336)
T ss_pred HHHHHhhcC--C--CEEEEecCCC
Confidence 999996643 1 2667777644
No 65
>TIGR01246 dapE_proteo succinyl-diaminopimelate desuccinylase, proteobacterial clade. This model describes a proteobacterial subset of succinyl-diaminopimelate desuccinylases. An experimentally confirmed Gram-positive lineage succinyl-diaminopimelate desuccinylase has been described for Corynebacterium glutamicum, and a neighbor-joining tree shows the seed members, SP:Q59284, and putative archaeal members such as TrEMBL:O58003 in a single clade. However, the archaeal members differ substantially, share a number of motifs with acetylornithine deacetylases rather than succinyl-diaminopimelate desuccinylases, and are not taken as trusted examples of succinyl-diaminopimelate desuccinylases. This model is limited to proteobacterial members for this reason.
Probab=98.94 E-value=8.9e-09 Score=116.31 Aligned_cols=135 Identities=19% Similarity=0.191 Sum_probs=98.1
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhccccCCceeEEEEEEeccCCcccccccccccccccccccceEEEEE
Q 002689 90 IKHVKALTELGPHPVGSDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDLNHIVLRI 169 (892)
Q Consensus 90 ~~~L~~L~~igpr~vGS~~~~~a~~yL~~~l~~ig~~a~~~~~ve~d~~~~~~g~~~~~g~~~~~~~~~y~~~~NVi~~i 169 (892)
.+.|++|.++ +..|.++.++++||.++|+++|. +++.. .. + +..|++++.
T Consensus 2 ~~~l~~lv~i---ps~s~~e~~~~~~i~~~l~~~G~------~~~~~--~~--------~-----------~~~~~~~~~ 51 (370)
T TIGR01246 2 TELAKELISR---PSVTPNDAGCQDIIAERLEKLGF------EIEWM--HF--------G-----------DTKNLWATR 51 (370)
T ss_pred hHHHHHHhcC---CCCCcchHHHHHHHHHHHHHCCC------EEEEE--ec--------C-----------CCceEEEEe
Confidence 3567888886 23344556889999999999983 33322 11 0 236899975
Q ss_pred cCCCCCcCCCCEEEEeeecccccC---------------------CCCCCCchhHHHHHHHHHHHHHhcCCCCCceEEEE
Q 002689 170 QPKYASEAAENAILVSSHIDTVFA---------------------AEGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFL 228 (892)
Q Consensus 170 ~g~~~~~~~~~~VLl~AH~DSv~~---------------------spGA~Dd~sgva~mLE~ar~L~~~~~~p~~~I~fl 228 (892)
|. ..+.|++.+|+|+||. ++|+.|++.|+++++++++.+.+.+.+++++|+|+
T Consensus 52 -g~-----~~~~i~~~~H~DtVp~~~~~~W~~~p~~~~~~dg~~yGrG~~D~Kgg~a~~l~a~~~l~~~~~~~~~~v~~~ 125 (370)
T TIGR01246 52 -GT-----GEPVLAFAGHTDVVPAGPEEQWSSPPFEPVERDGKLYGRGAADMKGSLAAFIVAAERFVKKNPDHKGSISLL 125 (370)
T ss_pred -cC-----CCcEEEEEccccccCCCCccccccCCCCcEEECCEEEecccccchHHHHHHHHHHHHHHHhcCCCCCcEEEE
Confidence 32 3478999999999975 27889999999999999999988776778899999
Q ss_pred EeCCcCCCC-CChHHHHhcCCc-cCCceEEEEee
Q 002689 229 FNTGEEEGL-NGAHSFVTQHPW-STTIRVAIDLE 260 (892)
Q Consensus 229 f~~aEE~gl-~GS~~fv~~h~~-~~~v~a~INLD 260 (892)
|..+||.+. .|++.+++.... ......+|..|
T Consensus 126 ~~~dEE~~~~~G~~~~~~~~~~~~~~~d~~i~~e 159 (370)
T TIGR01246 126 ITSDEEGTAIDGTKKVVETLMARDELIDYCIVGE 159 (370)
T ss_pred EEeccccCCCcCHHHHHHHHHhcCCCCCEEEEcC
Confidence 999999864 699988743211 11345555545
No 66
>TIGR01900 dapE-gram_pos succinyl-diaminopimelate desuccinylase. This enzyme is involved in the biosynthesis of lysine, and is related to the enzyme acetylornithine deacetylase and other amidases and peptidases found within pfam01546.
Probab=98.92 E-value=1.3e-08 Score=115.68 Aligned_cols=134 Identities=25% Similarity=0.249 Sum_probs=96.7
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhccccCCceeEEEEEEeccCCcccccccccccccccccccceEEEEEcCC
Q 002689 93 VKALTELGPHPVGSDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDLNHIVLRIQPK 172 (892)
Q Consensus 93 L~~L~~igpr~vGS~~~~~a~~yL~~~l~~ig~~a~~~~~ve~d~~~~~~g~~~~~g~~~~~~~~~y~~~~NVi~~i~g~ 172 (892)
|++|.+| |-+ |.++.++.+||.++|++++.. .++++.+ ..||++++.+.
T Consensus 2 l~~Lv~i-pS~--s~~e~~~~~~i~~~l~~~g~~-----~~~~~~~-----------------------~~nvva~~~~~ 50 (373)
T TIGR01900 2 LQQIMDI-FSP--SDHEGPIADEIEAALNNLELE-----GLEVFRF-----------------------GDNVLARTDFG 50 (373)
T ss_pred hHHHhCC-CCC--CchHHHHHHHHHHHHhhcccc-----CceEEEE-----------------------CCEEEEecCCC
Confidence 5778886 222 334557899999999988621 1222210 13999987432
Q ss_pred CCCcCCCCEEEEeeecccccC-------------------------------CCCCCCchhHHHHHHHHHHHHHh--cCC
Q 002689 173 YASEAAENAILVSSHIDTVFA-------------------------------AEGAGDCSSCVAVMLELARAMSQ--WAH 219 (892)
Q Consensus 173 ~~~~~~~~~VLl~AH~DSv~~-------------------------------spGA~Dd~sgva~mLE~ar~L~~--~~~ 219 (892)
+.+.|++++|+|+||. ++|+.|+++|+|+||++++.|.+ .+.
T Consensus 51 -----~~~~l~l~gH~DtVp~~~~~~~~W~~~p~~~~~~~~~~~~~~~g~lyGRGa~DmKgg~aa~l~a~~~l~~~~~~~ 125 (373)
T TIGR01900 51 -----KASRVILAGHIDTVPIADNFPPKWLEPGDSLIREEIAHAHPEDGILWGCGATDMKAGDAVMLHLAATLDGRAPET 125 (373)
T ss_pred -----CCCeEEEeCccccccCCCCChhhhccCcccccccccccccccCCEEEecCchhhhHHHHHHHHHHHHHhhhcccc
Confidence 2467999999999952 27999999999999999999954 344
Q ss_pred CCCceEEEEEeCCcCCCC--CChHHHHhcCCccCCceEEEEeecc
Q 002689 220 GFKNAVIFLFNTGEEEGL--NGAHSFVTQHPWSTTIRVAIDLEAM 262 (892)
Q Consensus 220 ~p~~~I~flf~~aEE~gl--~GS~~fv~~h~~~~~v~a~INLD~~ 262 (892)
.++.+|.|+|..+||.+. .|+..++++++...+..++|..|..
T Consensus 126 ~~~~~i~~~~~~dEE~~~~~~G~~~~~~~~~~~~~~d~~iv~Ept 170 (373)
T TIGR01900 126 ELKHDLTLIAYDCEEVAAEKNGLGHIRDAHPDWLAADFAIIGEPT 170 (373)
T ss_pred CCCCCEEEEEEecccccCCCCCHHHHHHhCcccccCCEEEEECCC
Confidence 678899999999999853 6999998765433345677777643
No 67
>PRK09961 exoaminopeptidase; Provisional
Probab=98.90 E-value=7.3e-08 Score=108.54 Aligned_cols=152 Identities=17% Similarity=0.141 Sum_probs=99.0
Q ss_pred CCCCchhHHHHHHHHHHHHHhcCCCCCceEEEEEeCCcCCCCCChHHHHhcCCccCCceEEEEeecccC-----------
Q 002689 196 GAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAIDLEAMGI----------- 264 (892)
Q Consensus 196 GA~Dd~sgva~mLE~ar~L~~~~~~p~~~I~flf~~aEE~gl~GS~~fv~~h~~~~~v~a~INLD~~G~----------- 264 (892)
-|.||..||++++|++|.+.+. ++..+++|+|+.-||.|+.||+.-... .. ...+|.+|..-.
T Consensus 163 kalDnR~g~~~lle~l~~l~~~--~~~~~v~~~~tvqEEvG~rGa~~aa~~--i~--pd~~I~vDv~~~~d~~~~~~~~~ 236 (344)
T PRK09961 163 KAFDDRLGCYLLVTLLRELHDA--ELPAEVWLVASSSEEVGLRGGQTATRA--VS--PDVAIVLDTACWAKNFDYGAANH 236 (344)
T ss_pred eechhhHhHHHHHHHHHHhhhc--CCCceEEEEEEcccccchHHHHHHHhc--cC--CCEEEEEeccCCCCCCCCCCCcc
Confidence 4779999999999999999754 468999999999999999999988732 32 345777775422
Q ss_pred ----CCCcceee-cCC--ChhHHHHHHHHccCCCCcchhhhccccCCCCCCCChHHHhhc-CCCeEEEEEeeCCCCCCCC
Q 002689 265 ----GGKSGLFQ-AGP--HPWAVENFAAAAKYPSGQVTAQDLFASGAITSATDFQVYKEV-AGLSGLDFAYTDKSAVYHT 336 (892)
Q Consensus 265 ----gG~~~lfq-~g~--~~~li~~~~~~a~~p~~~~l~~~~f~~g~ips~TD~~~F~~~-~GIPgld~a~~~~~~~YHT 336 (892)
+|+.+.+. .++ ++.+.+...+.++.- +.....+.+ ...+||-..|... .|+|.+.+..- .. +-||
T Consensus 237 ~~lg~Gp~i~~~D~~~i~~~~l~~~l~~~A~~~-~Ip~Q~~~~----~ggGTDa~~~~~~~~Giptv~ig~p-~r-y~Hs 309 (344)
T PRK09961 237 RQIGNGPMLVLSDKSLIAPPKLTAWIETVAAEI-GIPLQADMF----SNGGTDGGAVHLTGTGVPTVVMGPA-TR-HGHC 309 (344)
T ss_pred cccCCCceEEEccCCcCCCHHHHHHHHHHHHHc-CCCcEEEec----CCCcchHHHHHHhCCCCCEEEechh-hh-cccC
Confidence 22222122 122 566666665554321 111111112 1246898877542 58999987653 22 3487
Q ss_pred CCcCcCCCCHHHHHHHHHHHHHHHHHH
Q 002689 337 KNDKLDLLKPGSLQHLGENMLAFLLQA 363 (892)
Q Consensus 337 ~~Dt~d~id~~sLq~~g~~~l~lv~~L 363 (892)
+. +.++.+.+.++.+.+.+++..+
T Consensus 310 ~~---E~v~~~D~~~~~~Ll~~~i~~l 333 (344)
T PRK09961 310 AA---SIADCRDILQMIQLLSALIQRL 333 (344)
T ss_pred hh---heEEHHHHHHHHHHHHHHHHHc
Confidence 64 5667788888888777777554
No 68
>TIGR01887 dipeptidaselike dipeptidase, putative. This model represents a clade of probable zinc dipeptidases, closely related to the characterized non-specific dipeptidase, PepV. Many enzymes in this clade have been given names including the terms "Xaa-His" and "carnosinase" due to the early mis-characterization of the Lactobacillus delbrueckii PepV enzyme. These names are likely too specific.
Probab=98.88 E-value=1.6e-08 Score=117.65 Aligned_cols=123 Identities=18% Similarity=0.212 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHhcCCCCC-----C-----CHHHHHHHHHHHHHHHhhccccCCceeEEEEEEeccCCccccccccccccc
Q 002689 87 FEAIKHVKALTELGPHPV-----G-----SDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRT 156 (892)
Q Consensus 87 erA~~~L~~L~~igpr~v-----G-----S~~~~~a~~yL~~~l~~ig~~a~~~~~ve~d~~~~~~g~~~~~g~~~~~~~ 156 (892)
+.+.+.|++|.+|.. +. + .++..++.+|+.++++++|. +++.
T Consensus 2 ~~~i~ll~~Lv~ipS-~s~~~~p~~~~~~~~~~~~~~~~l~~~~~~~g~------~~~~--------------------- 53 (447)
T TIGR01887 2 DEILEDLKELIRIDS-VEDLEEAKEGAPFGEGPKKALDKFLELAKRDGF------TTEN--------------------- 53 (447)
T ss_pred hHHHHHHHHhcCcCc-CCCCCCCCCCCCcchhHHHHHHHHHHHHHHcCc------eEEE---------------------
Confidence 357788889988732 11 1 12345899999999999883 2221
Q ss_pred ccccccceEEEEEcCCCCCcCCCCEEEEeeecccccC-------------------CCCCCCchhHHHHHHHHHHHHHhc
Q 002689 157 LIYSDLNHIVLRIQPKYASEAAENAILVSSHIDTVFA-------------------AEGAGDCSSCVAVMLELARAMSQW 217 (892)
Q Consensus 157 ~~y~~~~NVi~~i~g~~~~~~~~~~VLl~AH~DSv~~-------------------spGA~Dd~sgva~mLE~ar~L~~~ 217 (892)
..|++++.... ...+.|++++|+|+||. ++|+.|++.|+++++++++.|.+.
T Consensus 54 -----~~~~~~~~~~~----~~~~~l~l~gH~D~Vp~~~~W~~~Pf~~~~~~g~lyGRGa~D~KG~laa~l~a~~~l~~~ 124 (447)
T TIGR01887 54 -----VDNYAGYAEYG----QGEEYLGILGHLDVVPAGDGWTSPPFEAEIKDGRIYGRGTLDDKGPTIAALYAMKILKEL 124 (447)
T ss_pred -----ecCceEEEEeC----CCCCeEEEEeecCCCCCCCCCcCCCCceEEECCEEEECCcccCcHHHHHHHHHHHHHHHc
Confidence 11333322211 12357999999999974 389999999999999999999988
Q ss_pred CCCCCceEEEEEeCCcCCCCCChHHHHhc
Q 002689 218 AHGFKNAVIFLFNTGEEEGLNGAHSFVTQ 246 (892)
Q Consensus 218 ~~~p~~~I~flf~~aEE~gl~GS~~fv~~ 246 (892)
+.+++++|.|+|..+||.|+.|+..++.+
T Consensus 125 ~~~~~~~i~~~~~~dEE~g~~g~~~~l~~ 153 (447)
T TIGR01887 125 GLKLKKKIRFIFGTDEETGWACIDYYFEH 153 (447)
T ss_pred CCCCCCcEEEEEECCcccCcHhHHHHHHh
Confidence 77788999999999999999999999854
No 69
>KOG2526 consensus Predicted aminopeptidases - M20/M25/M40 family [Amino acid transport and metabolism]
Probab=98.87 E-value=7.5e-08 Score=107.04 Aligned_cols=196 Identities=18% Similarity=0.215 Sum_probs=132.4
Q ss_pred ccceEEEEEc-CCC--CCcCCCCEEEEeeecccccC----CCCCCCchhHHHHHHHHHHHHHhc----CCCCCceEEEEE
Q 002689 161 DLNHIVLRIQ-PKY--ASEAAENAILVSSHIDTVFA----AEGAGDCSSCVAVMLELARAMSQW----AHGFKNAVIFLF 229 (892)
Q Consensus 161 ~~~NVi~~i~-g~~--~~~~~~~~VLl~AH~DSv~~----spGA~Dd~sgva~mLE~ar~L~~~----~~~p~~~I~flf 229 (892)
...||.+++. |-. .+.+..+.|++.||||+... ++||.-|++|++++||++|.+++- ....+.++.|+.
T Consensus 192 ki~nI~G~L~~glra~~dg~~lPtIaivA~ydtfgaap~lsvgADSNGSGvvaLLelarlfSkly~ypsTrakYnLlF~l 271 (555)
T KOG2526|consen 192 KILNIVGRLSSGLRAEGDGSALPTIAIVAHYDTFGAAPGLSVGADSNGSGVVALLELARLFSKLYDYPSTRAKYNLLFIL 271 (555)
T ss_pred ccceEEeecccccccccccccCCeEEEEEeccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHhcCcccccceeEEEEE
Confidence 7899999998 321 01245689999999999754 689999999999999999999982 245689999999
Q ss_pred eCCcCCCCCChHHHHhcCC--ccCCceEEEEeecccCCCCcceeecC-C--ChhHHHHHHH----HccCCCCcchhhhcc
Q 002689 230 NTGEEEGLNGAHSFVTQHP--WSTTIRVAIDLEAMGIGGKSGLFQAG-P--HPWAVENFAA----AAKYPSGQVTAQDLF 300 (892)
Q Consensus 230 ~~aEE~gl~GS~~fv~~h~--~~~~v~a~INLD~~G~gG~~~lfq~g-~--~~~li~~~~~----~a~~p~~~~l~~~~f 300 (892)
++|--...+|++.|++-.. .++++..+|+||++|.+..+.....+ | +...+.++-+ .+++..-....
T Consensus 272 t~aG~lNyqGTkkWLe~dd~~lq~nVdfaiCLdtig~~~s~l~mHvsKpP~dnt~i~qffr~l~svAek~~~~v~~---- 347 (555)
T KOG2526|consen 272 TAAGKLNYQGTKKWLEFDDADLQKNVDFAICLDTIGRKTSGLFMHVSKPPSDNTVIAQFFRRLNSVAEKKNIEVVT---- 347 (555)
T ss_pred ccCccccccchhhhhhcchHHHHhcccEEEEhhhhccccCceEEEccCCCCcchHHHHHHHHhhhhchhcceEEEE----
Confidence 9999999999999996432 35799999999999997544433322 2 3344444432 23322211000
Q ss_pred ccCCCCC-----CCChHHHhhcCCCeEEEEEeeCCC--CCCCCCC-cCcCCCCHHHHHHHHHHHHHHHH
Q 002689 301 ASGAITS-----ATDFQVYKEVAGLSGLDFAYTDKS--AVYHTKN-DKLDLLKPGSLQHLGENMLAFLL 361 (892)
Q Consensus 301 ~~g~ips-----~TD~~~F~~~~GIPgld~a~~~~~--~~YHT~~-Dt~d~id~~sLq~~g~~~l~lv~ 361 (892)
+...|.- .=.|.-|.- ..+|++.+...... +.-.+.. |+...+|.++|-+..+.+.+.+.
T Consensus 348 khkkInla~s~lAWEHErFsi-kR~pAfTLS~l~Sprdp~rnsi~~d~rsrldedtLi~ntRlIaEAla 415 (555)
T KOG2526|consen 348 KHKKINLASSRLAWEHERFSI-KRMPAFTLSTLPSPRDPARNSILLDLRSRLDEDTLIDNTRLIAEALA 415 (555)
T ss_pred EeeeEeeccchhhhhhhhhhh-hcccceeeccCCCCcchhhccccccchhhhhhhhhhhhhhHHHHHHH
Confidence 0001111 124666765 67999998875432 2344445 99999999988865555554443
No 70
>TIGR03107 glu_aminopep glutamyl aminopeptidase. This model represents the M42.001 clade within MEROPS family M42. M42 includes glutamyl aminopeptidase as in the present model, deblocking aminopeptidases as from Pyrococcus horikoshii and related species, and endo-1,4-beta-glucanase (cellulase M) as from Clostridium thermocellum. The current family includes
Probab=98.86 E-value=1.5e-07 Score=106.19 Aligned_cols=150 Identities=21% Similarity=0.206 Sum_probs=99.5
Q ss_pred CCCchhHHHHHHHHHHHHHhcCCCCCceEEEEEeCCcCCCCCChHHHHhcCCccCCceEEEEeecccC------------
Q 002689 197 AGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAIDLEAMGI------------ 264 (892)
Q Consensus 197 A~Dd~sgva~mLE~ar~L~~~~~~p~~~I~flf~~aEE~gl~GS~~fv~~h~~~~~v~a~INLD~~G~------------ 264 (892)
|.||..||++++|++|.+.+. +++.+++++|+.-||.|+.||+.-+.+ . +...+|.+|..-.
T Consensus 176 alDdR~g~a~l~e~l~~l~~~--~~~~~l~~~~tvqEEvG~rGA~~aa~~--i--~pD~aI~vDv~~~~d~~~~~~~~lg 249 (350)
T TIGR03107 176 AWDNRYGVLMILELLESLKDQ--ELPNTLIAGANVQEEVGLRGAHVSTTK--F--NPDIFFAVDCSPAGDIYGDQGGKLG 249 (350)
T ss_pred ccccHHHHHHHHHHHHHhhhc--CCCceEEEEEEChhhcCchhhhhHHhh--C--CCCEEEEEecCCcCCCCCCCccccC
Confidence 789999999999999999864 578899999999999999999976532 2 2237777775422
Q ss_pred CCCcceee-cCC--ChhHHHHHHHHccCCCCcchhhhccccCCCCCCCChH--HHhhcCCCeEEEEEeeCCCCCCCCCCc
Q 002689 265 GGKSGLFQ-AGP--HPWAVENFAAAAKYPSGQVTAQDLFASGAITSATDFQ--VYKEVAGLSGLDFAYTDKSAVYHTKND 339 (892)
Q Consensus 265 gG~~~lfq-~g~--~~~li~~~~~~a~~p~~~~l~~~~f~~g~ips~TD~~--~F~~~~GIPgld~a~~~~~~~YHT~~D 339 (892)
.|+.+.+. .++ ++.+.+...+.++. .+.. .|-.. ...+||-. .+.. .|+|.+.+..-- .+-||+.
T Consensus 250 ~Gp~i~~~D~~~i~~~~l~~~l~~~A~~-~~I~-~Q~~~----~~gGtDa~~~~~~~-~Gvpt~~i~ip~--Ry~Hs~~- 319 (350)
T TIGR03107 250 EGTLLRFFDPGHIMLPRMKDFLLTTAEE-AGIK-YQYYV----AKGGTDAGAAHLKN-SGVPSTTIGVCA--RYIHSHQ- 319 (350)
T ss_pred CCceEEEecCCCCCCHHHHHHHHHHHHH-cCCC-cEEec----CCCCchHHHHHHhC-CCCcEEEEccCc--ccccChh-
Confidence 14443232 233 67777766665432 1111 11111 12356666 5554 799999876321 2358875
Q ss_pred CcCCCCHHHHHHHHHHHHHHHHHHH
Q 002689 340 KLDLLKPGSLQHLGENMLAFLLQAA 364 (892)
Q Consensus 340 t~d~id~~sLq~~g~~~l~lv~~La 364 (892)
+.++.+.++++.+.+.+++..+.
T Consensus 320 --e~i~~~D~~~~~~Ll~~~i~~l~ 342 (350)
T TIGR03107 320 --TLYSIDDFLAAQAFLQAIVKKLD 342 (350)
T ss_pred --heeeHHHHHHHHHHHHHHHHhcC
Confidence 56688888888888888887653
No 71
>TIGR01891 amidohydrolases amidohydrolase. This model represents a subfamily of amidohydrolases which are a subset of those sequences detected by pfam01546. Included within this group are hydrolases of hippurate (N-benzylglycine), indoleacetic acid (IAA) N-conjugates of amino acids, N-acetyl-L-amino acids and aminobenzoylglutamate. These hydrolases are of the carboxypeptidase-type, most likely utilizing a zinc ion in the active site.
Probab=98.83 E-value=4.3e-08 Score=110.77 Aligned_cols=132 Identities=16% Similarity=0.197 Sum_probs=98.0
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhccccCCceeEEEEEEeccCCcccccccccccccccccccceEEEEEc
Q 002689 91 KHVKALTELGPHPVGSDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDLNHIVLRIQ 170 (892)
Q Consensus 91 ~~L~~L~~igpr~vGS~~~~~a~~yL~~~l~~ig~~a~~~~~ve~d~~~~~~g~~~~~g~~~~~~~~~y~~~~NVi~~i~ 170 (892)
+.+++|.++ |.+.| .+.++.+||.++|+++|. +++.+ .. ...|+++++.
T Consensus 3 ~~~~~L~~i-ps~s~--~E~~~a~~l~~~l~~~g~------~~~~~--~~--------------------~~~~vva~~~ 51 (363)
T TIGR01891 3 DIRRHLHEH-PELSF--EEFKTSSLIAEALESLGI------EVRRG--VG--------------------GATGVVATIG 51 (363)
T ss_pred HHHHHHhcC-CCCCC--chHHHHHHHHHHHHHcCC------ceEec--CC--------------------CCcEEEEEEe
Confidence 567888887 55544 446899999999999983 23221 00 2379999987
Q ss_pred CCCCCcCCCCEEEEeeecccccCC-----------------CCCCCchhHHHHHHHHHHHHHhcCCCCCceEEEEEeCCc
Q 002689 171 PKYASEAAENAILVSSHIDTVFAA-----------------EGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGE 233 (892)
Q Consensus 171 g~~~~~~~~~~VLl~AH~DSv~~s-----------------pGA~Dd~sgva~mLE~ar~L~~~~~~p~~~I~flf~~aE 233 (892)
+. .+.+.|++++|+|+||.. +|+ .+++|+++.+++.|.+.+.+++++|.|+|+.+|
T Consensus 52 ~~----~~~~~i~l~gH~DtVp~~~~~~~pf~~~~~g~l~g~G~---~~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dE 124 (363)
T TIGR01891 52 GG----KPGPVVALRADMDALPIQEQTDLPYKSTNPGVMHACGH---DLHTAILLGTAKLLKKLADLLEGTVRLIFQPAE 124 (363)
T ss_pred CC----CCCCEEEEEeccCCCCcccccCCCcccCCCCceecCcC---HHHHHHHHHHHHHHHhchhhCCceEEEEEeecC
Confidence 64 234789999999999841 333 367899999999998866667889999999999
Q ss_pred CCCCCChHHHHhcCCccCCceEEEEeecc
Q 002689 234 EEGLNGAHSFVTQHPWSTTIRVAIDLEAM 262 (892)
Q Consensus 234 E~gl~GS~~fv~~h~~~~~v~a~INLD~~ 262 (892)
|.+ .|++.++++. +.+++..+|++|..
T Consensus 125 E~~-~G~~~~~~~~-~~~~~d~~i~~e~~ 151 (363)
T TIGR01891 125 EGG-GGATKMIEDG-VLDDVDAILGLHPD 151 (363)
T ss_pred cCc-chHHHHHHCC-CCCCcCEEEEECCC
Confidence 986 7999998554 34556778887753
No 72
>PRK09864 putative peptidase; Provisional
Probab=98.81 E-value=2.4e-07 Score=104.46 Aligned_cols=149 Identities=19% Similarity=0.171 Sum_probs=97.6
Q ss_pred CCCchhHHHHHHHHHHHHHhcCCCCCceEEEEEeCCcCCCCCChHHHHhcCCccCCceEEEEeecccC------------
Q 002689 197 AGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAIDLEAMGI------------ 264 (892)
Q Consensus 197 A~Dd~sgva~mLE~ar~L~~~~~~p~~~I~flf~~aEE~gl~GS~~fv~~h~~~~~v~a~INLD~~G~------------ 264 (892)
|-||..||++++|++|.+.+ ++.+++|+|+.-||.|+.||+.-+.+. .. ..+|.+|..-+
T Consensus 173 alDnR~g~~~lle~l~~l~~----~~~~vy~v~TvQEEvGlrGA~~aa~~i--~P--DiaIavDvt~~~d~p~~~~~~~~ 244 (356)
T PRK09864 173 ALDNRIGCAMMAELLQTVNN----PEITLYGVGSVEEEVGLRGAQTSAEHI--KP--DVVIVLDTAVAGDVPGIDNIKYP 244 (356)
T ss_pred eCccHHHHHHHHHHHHHhhc----CCCeEEEEEEcchhcchHHHHHHHhcC--CC--CEEEEEecccCCCCCCCcccccc
Confidence 77999999999999999964 779999999999999999999877333 23 34777774321
Q ss_pred ----CCCcc-eeecCC--ChhHHHHHHHHccCCCCcchhhhccccCCCCCCCChHHHhhc-CCCeEEEEEeeCCCCCCCC
Q 002689 265 ----GGKSG-LFQAGP--HPWAVENFAAAAKYPSGQVTAQDLFASGAITSATDFQVYKEV-AGLSGLDFAYTDKSAVYHT 336 (892)
Q Consensus 265 ----gG~~~-lfq~g~--~~~li~~~~~~a~~p~~~~l~~~~f~~g~ips~TD~~~F~~~-~GIPgld~a~~~~~~~YHT 336 (892)
+|+.+ .+..++ ++.+.+...+.++. .+.-...++... .+||-..+... .|+|.+.+..- .+ +-||
T Consensus 245 ~~lG~Gp~i~~~D~~~i~~~~l~~~l~~~A~~-~~Ip~Q~~~~~~----ggTDa~~i~~~~~Gvpt~~isiP-~R-Y~Hs 317 (356)
T PRK09864 245 LKLGQGPGLMLFDKRYFPNQKLVAALKSCAAH-NDLPLQFSTMKT----GATDGGRYNVMGGGRPVVALCLP-TR-YLHA 317 (356)
T ss_pred cccCCCCeEEEccCCccCCHHHHHHHHHHHHH-cCCCceEEEcCC----CCchHHHHHHhCCCCcEEEEeec-cC-cCCC
Confidence 23333 222233 67777766655421 111111122221 36777766543 68999877642 22 4588
Q ss_pred CCcCcCCCCHHHHHHHHHHHHHHHHHH
Q 002689 337 KNDKLDLLKPGSLQHLGENMLAFLLQA 363 (892)
Q Consensus 337 ~~Dt~d~id~~sLq~~g~~~l~lv~~L 363 (892)
+. +.++.+.++++.+.+.+++..+
T Consensus 318 ~~---e~~~~~D~e~~~~Ll~~~~~~l 341 (356)
T PRK09864 318 NS---GMISKADYDALLTLIRDFLTTL 341 (356)
T ss_pred cc---eEeEHHHHHHHHHHHHHHHHhc
Confidence 75 5567777888888887777665
No 73
>TIGR03320 ygeY M20/DapE family protein YgeY. Members of this protein family, including the YgeY protein of Escherichia coli, typically are found in extended genomic regions associated with purine catabolism. Homologs include peptidases and deacylases of the M20/M25 /M40 and DapE/ArgE families. The function is unknown.
Probab=98.81 E-value=5.7e-08 Score=110.96 Aligned_cols=122 Identities=19% Similarity=0.213 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhccccCCceeEEEEEEeccCCcccccccccccccccccccceEE
Q 002689 87 FEAIKHVKALTELGPHPVGSDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDLNHIV 166 (892)
Q Consensus 87 erA~~~L~~L~~igpr~vGS~~~~~a~~yL~~~l~~ig~~a~~~~~ve~d~~~~~~g~~~~~g~~~~~~~~~y~~~~NVi 166 (892)
+++.+.+++|.++ |-+ |..+.++.+||.++|+++|.+ .++.+ ...|++
T Consensus 13 ~~~~~~~~~lv~i-~s~--s~~e~~~~~~l~~~l~~~G~~-----~~~~~------------------------~~~n~~ 60 (395)
T TIGR03320 13 GDMIRFLRDLVAI-PSE--SGDEKRVAERIKEEMEKLGFD-----KVEID------------------------PMGNVL 60 (395)
T ss_pred HHHHHHHHHHHcC-CCC--CCchHHHHHHHHHHHHHhCCc-----EEEEC------------------------CCCCEE
Confidence 6788889999987 223 233468899999999999831 11111 125888
Q ss_pred EEEcCCCCCcCCCCEEEEeeecccccC---------------------CCCCCCchhHHHHHHHHHHHHHhcCCCCCceE
Q 002689 167 LRIQPKYASEAAENAILVSSHIDTVFA---------------------AEGAGDCSSCVAVMLELARAMSQWAHGFKNAV 225 (892)
Q Consensus 167 ~~i~g~~~~~~~~~~VLl~AH~DSv~~---------------------spGA~Dd~sgva~mLE~ar~L~~~~~~p~~~I 225 (892)
+++ |. ..+.|++.+|+|+||. ++|+.|+++|+|++|.+++.|.+.+..++.+|
T Consensus 61 ~~~-g~-----~~~~l~l~~H~DtVp~~~~~~w~~~Pf~~~~~~g~lyGrG~~D~Kg~~aa~l~A~~~l~~~g~~~~~~i 134 (395)
T TIGR03320 61 GYI-GH-----GPKLIAMDAHIDTVGIGDSKQWQFDPYEGYEDEEIIYGRGASDQEGGIASMVYAGKIIKDLGLLDDYTL 134 (395)
T ss_pred EEe-CC-----CCcEEEEEecccccCCCCccccccCCCceEEECCEEEecCccCccchHHHHHHHHHHHHHcCCCCCceE
Confidence 887 43 2367999999999974 38999999999999999999998776678899
Q ss_pred EEEEeCCcCCC-CCChHHHHhc
Q 002689 226 IFLFNTGEEEG-LNGAHSFVTQ 246 (892)
Q Consensus 226 ~flf~~aEE~g-l~GS~~fv~~ 246 (892)
+|++..+||.+ ..|++.++.+
T Consensus 135 ~~~~~~dEE~~~g~~~~~~~~~ 156 (395)
T TIGR03320 135 LVTGTVQEEDCDGLCWQYIIEE 156 (395)
T ss_pred EEEecccccccCchHHHHHHHh
Confidence 99999999963 2344555533
No 74
>TIGR03526 selenium_YgeY putative selenium metabolism hydrolase. SelD, selenophosphate synthase, is the selenium donor protein for both selenocysteine and selenouridine biosynthesis systems, but it occurs also in a few prokaryotes that have neither of those pathways. The method of partial phylogenetic profiling, starting from such orphan-selD genomes, identifies this protein as one of those most strongly correlated to SelD occurrence. Its distribution is also well correlated with that of family TIGR03309, a putative accessory protein of labile selenium (non-selenocysteine) enzyme maturation. This family includes the uncharacterized YgeY of Escherichia coli, and belongs to a larger family of metalloenzymes in which some are known peptidases, others enzymes of different types.
Probab=98.79 E-value=7.9e-08 Score=109.89 Aligned_cols=122 Identities=19% Similarity=0.208 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhccccCCceeEEEEEEeccCCcccccccccccccccccccceEE
Q 002689 87 FEAIKHVKALTELGPHPVGSDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDLNHIV 166 (892)
Q Consensus 87 erA~~~L~~L~~igpr~vGS~~~~~a~~yL~~~l~~ig~~a~~~~~ve~d~~~~~~g~~~~~g~~~~~~~~~y~~~~NVi 166 (892)
+++.+.+++|.++ |-+ |..+.++.+||.+.|+++|.+ .++.+ ...|++
T Consensus 13 ~~~~~~l~~Lv~i-ps~--s~~e~~~~~~l~~~l~~~g~~-----~~~~~------------------------~~~~v~ 60 (395)
T TIGR03526 13 GDMIRFLRDLVAI-PSE--SGDEGRVALRIKQEMEKLGFD-----KVEID------------------------PMGNVL 60 (395)
T ss_pred HHHHHHHHHHhcC-CCC--CCchHHHHHHHHHHHHHcCCc-----eEEEc------------------------CCCcEE
Confidence 5778889999886 323 333457889999999998831 11111 225888
Q ss_pred EEEcCCCCCcCCCCEEEEeeecccccC---------------------CCCCCCchhHHHHHHHHHHHHHhcCCCCCceE
Q 002689 167 LRIQPKYASEAAENAILVSSHIDTVFA---------------------AEGAGDCSSCVAVMLELARAMSQWAHGFKNAV 225 (892)
Q Consensus 167 ~~i~g~~~~~~~~~~VLl~AH~DSv~~---------------------spGA~Dd~sgva~mLE~ar~L~~~~~~p~~~I 225 (892)
+++ |. ..+.|++.+|+|+||. ++|+.|+++|++++|.+++.|.+.+..++.++
T Consensus 61 ~~~-g~-----~~~~l~l~~H~DtVp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kg~~aa~l~a~~~l~~~~~~~~~~v 134 (395)
T TIGR03526 61 GYI-GH-----GPKLIAMDAHIDTVGIGDMDQWQFDPYEGYEDEEIIYGRGASDQEGGIASMVYAGKIIKDLGLLDDYTL 134 (395)
T ss_pred EEe-CC-----CCCEEEEEeeccccCCCCcccccCCCCceEEECCEEEecCccccchhHHHHHHHHHHHHHcCCCCCceE
Confidence 887 43 2367999999999984 38999999999999999999998776677899
Q ss_pred EEEEeCCcCC-CCCChHHHHhc
Q 002689 226 IFLFNTGEEE-GLNGAHSFVTQ 246 (892)
Q Consensus 226 ~flf~~aEE~-gl~GS~~fv~~ 246 (892)
.|++..+||. +..|++.++++
T Consensus 135 ~~~~~~dEE~~~g~~~~~~~~~ 156 (395)
T TIGR03526 135 LVTGTVQEEDCDGLCWQYIIEE 156 (395)
T ss_pred EEEEecccccCCcHhHHHHHhc
Confidence 9999999993 44566676644
No 75
>PRK08737 acetylornithine deacetylase; Provisional
Probab=98.72 E-value=1.2e-07 Score=107.71 Aligned_cols=130 Identities=20% Similarity=0.219 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHhcCCCC-CCCHHHHHHHHHHHHHHHhhccccCCceeEEEEEEeccCCcccccccccccccccccccce
Q 002689 86 EFEAIKHVKALTELGPHP-VGSDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDLNH 164 (892)
Q Consensus 86 ~erA~~~L~~L~~igpr~-vGS~~~~~a~~yL~~~l~~ig~~a~~~~~ve~d~~~~~~g~~~~~g~~~~~~~~~y~~~~N 164 (892)
.+++.+.|++|.+|.... .++.++.++.+|+.++|+ | .+++++ .. + .+..|
T Consensus 5 ~~~~~~~l~~Lv~i~s~~~~~~~~e~~~~~~l~~~l~--g------~~~~~~--~~--------~----------~~~~n 56 (364)
T PRK08737 5 LESTLDHLQALVSFDTRNPPRAITTGGIFDYLRAQLP--G------FQVEVI--DH--------G----------AGAVS 56 (364)
T ss_pred HHHHHHHHHHHhCCCCcCCCCCCCcHHHHHHHHHHhC--C------CEEEEe--cC--------C----------CCceE
Confidence 457889999999984321 122223688899999995 3 234332 11 0 03468
Q ss_pred EEEEEcCCCCCcCCCCEEEEeeecccccC-------------------CCCCCCchhHHHHHHHHHHHHHhcCCCCCceE
Q 002689 165 IVLRIQPKYASEAAENAILVSSHIDTVFA-------------------AEGAGDCSSCVAVMLELARAMSQWAHGFKNAV 225 (892)
Q Consensus 165 Vi~~i~g~~~~~~~~~~VLl~AH~DSv~~-------------------spGA~Dd~sgva~mLE~ar~L~~~~~~p~~~I 225 (892)
++++ .|+ +.|++++|+|+||. ++|+.|+++|+|+||.+++. ++.+|
T Consensus 57 li~~-~g~-------~~lll~gH~DtVp~~~~w~~~Pf~~~~~~g~lyGrGa~DmKg~~aa~l~a~~~-------~~~~v 121 (364)
T PRK08737 57 LYAV-RGT-------PKYLFNVHLDTVPDSPHWSADPHVMRRTDDRVIGLGVCDIKGAAAALLAAANA-------GDGDA 121 (364)
T ss_pred EEEE-cCC-------CeEEEEeeeCCCCCCCCCCCCCCceEEECCEEEEECcccchHHHHHHHHHHHc-------cCCCE
Confidence 8886 332 46999999999984 27999999999999999874 35689
Q ss_pred EEEEeCCcCCCC-CChHHHHhcCCccCCceEEEEeec
Q 002689 226 IFLFNTGEEEGL-NGAHSFVTQHPWSTTIRVAIDLEA 261 (892)
Q Consensus 226 ~flf~~aEE~gl-~GS~~fv~~h~~~~~v~a~INLD~ 261 (892)
.|+|+.+||.|. .|++.++++.. +..++|..|.
T Consensus 122 ~~~~~~dEE~g~~~g~~~~~~~~~---~~~~~iv~Ep 155 (364)
T PRK08737 122 AFLFSSDEEANDPRCVAAFLARGI---PYEAVLVAEP 155 (364)
T ss_pred EEEEEcccccCchhhHHHHHHhCC---CCCEEEEcCC
Confidence 999999999887 68889886542 2345555553
No 76
>PLN02693 IAA-amino acid hydrolase
Probab=98.55 E-value=1.1e-06 Score=102.07 Aligned_cols=122 Identities=17% Similarity=0.240 Sum_probs=90.9
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhccccCCceeEEEEEEeccCCcccccccccccccccccccceEEE
Q 002689 88 EAIKHVKALTELGPHPVGSDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDLNHIVL 167 (892)
Q Consensus 88 rA~~~L~~L~~igpr~vGS~~~~~a~~yL~~~l~~ig~~a~~~~~ve~d~~~~~~g~~~~~g~~~~~~~~~y~~~~NVi~ 167 (892)
.+.+..++|-+ +|.-|-++.++.+||.++|+++|. +++.. . ...||++
T Consensus 48 ~~~~~r~~lh~---~PE~s~~E~~ta~~i~~~L~~~G~------~~~~~---~--------------------~~~~via 95 (437)
T PLN02693 48 WMVRIRRKIHE---NPELGYEEFETSKLIRSELDLIGI------KYRYP---V--------------------AITGIIG 95 (437)
T ss_pred HHHHHHHHHHh---CCCCCCchHHHHHHHHHHHHHCCC------eeEec---C--------------------CCcEEEE
Confidence 44555556655 344455566899999999999983 22211 0 2479999
Q ss_pred EEcCCCCCcCCCCEEEEeeecccccCC-----------CC---CCCchhHHHHHHHHHHHHHhcCCCCCceEEEEEeCCc
Q 002689 168 RIQPKYASEAAENAILVSSHIDTVFAA-----------EG---AGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGE 233 (892)
Q Consensus 168 ~i~g~~~~~~~~~~VLl~AH~DSv~~s-----------pG---A~Dd~sgva~mLE~ar~L~~~~~~p~~~I~flf~~aE 233 (892)
++.+. +.+.|++.+|+|+||.. +| +.|.++++|++|.+++.|++.+.+++.+|.|+|..+|
T Consensus 96 ~~g~~-----~g~~i~l~~h~DaVp~~e~~~~~~~p~~~G~~hacGhkg~~A~~l~Aa~~L~~~~~~~~g~V~~if~pdE 170 (437)
T PLN02693 96 YIGTG-----EPPFVALRADMDALPIQEAVEWEHKSKIPGKMHACGHDGHVAMLLGAAKILQEHRHHLQGTVVLIFQPAE 170 (437)
T ss_pred EECCC-----CCCEEEEEeecCCCcCCCCCCCCCCCCCCCCEECCcchHHHHHHHHHHHHHHhCcccCCceEEEEEEEcc
Confidence 98322 34789999999999852 12 6788899999999999998876566789999999999
Q ss_pred CCCCCChHHHHhcC
Q 002689 234 EEGLNGAHSFVTQH 247 (892)
Q Consensus 234 E~gl~GS~~fv~~h 247 (892)
| +..|++.++++.
T Consensus 171 E-~~~Ga~~~i~~g 183 (437)
T PLN02693 171 E-GLSGAKKMREEG 183 (437)
T ss_pred c-chhhHHHHHHCC
Confidence 9 457999998553
No 77
>COG4187 RocB Arginine degradation protein (predicted deacylase) [Amino acid transport and metabolism]
Probab=98.52 E-value=4.4e-07 Score=101.61 Aligned_cols=159 Identities=17% Similarity=0.180 Sum_probs=122.0
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhcc-ccCCceeEEEEEEeccCCcccccccccccccccccc
Q 002689 83 GFSEFEAIKHVKALTELGPHPVGSDALDRALQYVFAAAQKIKE-TKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSD 161 (892)
Q Consensus 83 ~fs~erA~~~L~~L~~igpr~vGS~~~~~a~~yL~~~l~~ig~-~a~~~~~ve~d~~~~~~g~~~~~g~~~~~~~~~y~~ 161 (892)
..+.||+.+....|++. |-..||+++..-.++|..-|.++-. +.+++ |.+.... . ...| +
T Consensus 4 ~is~e~v~~lt~~LV~~-~SvtgT~GE~a~ad~l~~vL~~~pYFqehpe-----d~~~~pi-----~-------nDpy-g 64 (553)
T COG4187 4 RISSERVRALTLSLVSW-PSVTGTPGEGAFADRLLGVLGELPYFQEHPE-----DLWLQPI-----H-------NDPY-G 64 (553)
T ss_pred hhhHHHHHHHHHHHeec-cccCCCcccccHHHHHHHHHhcCchhhhChH-----hhcccCC-----C-------CCcc-c
Confidence 35689999999999984 7788999998889999999887742 11111 1111110 0 1123 5
Q ss_pred cceEEEEEcCCCCCcCCCCEEEEeeecccccC------------------------------------------CCCCCC
Q 002689 162 LNHIVLRIQPKYASEAAENAILVSSHIDTVFA------------------------------------------AEGAGD 199 (892)
Q Consensus 162 ~~NVi~~i~g~~~~~~~~~~VLl~AH~DSv~~------------------------------------------spGA~D 199 (892)
..||.+-++|. ++++.|++.+|+|+|.. ++|+.|
T Consensus 65 R~nv~AlVrg~----~~k~tvvl~gH~DtV~iedYg~lKd~Afdp~~ll~~~i~~~e~~~erv~~Dl~SGDwlfGRGa~D 140 (553)
T COG4187 65 RRNVFALVRGG----TSKRTVVLHGHFDTVSIEDYGELKDLAFDPLALLDALIESLELREERVLRDLESGDWLFGRGALD 140 (553)
T ss_pred cceeEEEEecC----CCCceEEEeeccceeecccccchhhhccCHHHHHHHHHHhhccCHHHHhhhhhccCcccCCCchh
Confidence 68999999985 57889999999999964 389999
Q ss_pred chhHHHHHHHHHHHHHhcCCCCCceEEEEEeCCcCCCCCChHHHHhcCCc-----cCCceEEEEeecccCC
Q 002689 200 CSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEEEGLNGAHSFVTQHPW-----STTIRVAIDLEAMGIG 265 (892)
Q Consensus 200 d~sgva~mLE~ar~L~~~~~~p~~~I~flf~~aEE~gl~GS~~fv~~h~~-----~~~v~a~INLD~~G~g 265 (892)
+++|.|+-|..++.+.+. ...+.+|.|+.+.+||....|.+.-+...+. .-...++||+|.++.-
T Consensus 141 MKsGlav~la~L~~fa~~-~~~~GNlLf~a~pdEE~~s~G~r~a~~~L~~L~kk~~l~~~~~IN~D~~~~~ 210 (553)
T COG4187 141 MKSGLAVHLACLEEFAAR-TDRQGNLLFMAVPDEEVESRGMREARPALPGLKKKFDLEYTAAINLDVTSDQ 210 (553)
T ss_pred hhhhhHHHHHHHHHHhhC-CCCCCcEEEEeccchhhhcccHHHHHHHHHHHHHhhCceEEEEeccccccCC
Confidence 999999999999999986 4678899999999999988888776654432 2367899999998763
No 78
>PLN02280 IAA-amino acid hydrolase
Probab=98.48 E-value=2.7e-06 Score=100.04 Aligned_cols=134 Identities=19% Similarity=0.237 Sum_probs=91.5
Q ss_pred HHHHHHHHHh-cCCCCCCCHHHHHHHHHHHHHHHhhccccCCceeEEEEEEeccCCcccccccccccccccccccceEEE
Q 002689 89 AIKHVKALTE-LGPHPVGSDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDLNHIVL 167 (892)
Q Consensus 89 A~~~L~~L~~-igpr~vGS~~~~~a~~yL~~~l~~ig~~a~~~~~ve~d~~~~~~g~~~~~g~~~~~~~~~y~~~~NVi~ 167 (892)
..+.|++|.+ +-.+|.-+.++.++.+||.++|+++|. +++.. . ...|+++
T Consensus 95 ~~~~l~~l~r~lh~~PEls~~E~~t~~~i~~~L~~~G~------~~~~~---~--------------------~~~~vva 145 (478)
T PLN02280 95 TVAWLKSVRRKIHENPELAFEEYKTSELVRSELDRMGI------MYRYP---L--------------------AKTGIRA 145 (478)
T ss_pred HHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHCCC------eEEec---C--------------------CCCEEEE
Confidence 3444555544 111333344556899999999999983 33321 0 2369999
Q ss_pred EEcCCCCCcCCCCEEEEeeecccccCCC-----------C---CCCchhHHHHHHHHHHHHHhcCCCCCceEEEEEeCCc
Q 002689 168 RIQPKYASEAAENAILVSSHIDTVFAAE-----------G---AGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGE 233 (892)
Q Consensus 168 ~i~g~~~~~~~~~~VLl~AH~DSv~~sp-----------G---A~Dd~sgva~mLE~ar~L~~~~~~p~~~I~flf~~aE 233 (892)
++ |+ .+++.|++.+|+|+||... | +.|...++|++|.++++|.+.+.+++.+|+|+|..+|
T Consensus 146 ~~-g~----~~~~~I~l~gh~DaVP~~e~~~w~~~p~~~G~~h~cGhd~~~A~~l~a~~~L~~~~~~~~g~V~~if~pdE 220 (478)
T PLN02280 146 WI-GT----GGPPFVAVRADMDALPIQEAVEWEHKSKVAGKMHACGHDAHVAMLLGAAKILKSREHLLKGTVVLLFQPAE 220 (478)
T ss_pred EE-CC----CCCCEEEEEEecCCCcccCCCCCCCCCCCCCeEEeCCCcHHHHHHHHHHHHHHhccccCCceEEEEecccc
Confidence 98 53 1237899999999998521 1 2334559999999999998766677889999999999
Q ss_pred CCCCCChHHHHhcCCccCCceEEEE
Q 002689 234 EEGLNGAHSFVTQHPWSTTIRVAID 258 (892)
Q Consensus 234 E~gl~GS~~fv~~h~~~~~v~a~IN 258 (892)
|.| .|++.++++ ...+++.+++-
T Consensus 221 E~g-~Ga~~li~~-g~~~~~d~~~~ 243 (478)
T PLN02280 221 EAG-NGAKRMIGD-GALDDVEAIFA 243 (478)
T ss_pred ccc-chHHHHHHC-CCCcCCCEEEE
Confidence 997 499999854 33333444443
No 79
>COG4310 Uncharacterized protein conserved in bacteria with an aminopeptidase-like domain [General function prediction only]
Probab=98.32 E-value=8.1e-06 Score=88.05 Aligned_cols=171 Identities=18% Similarity=0.228 Sum_probs=128.0
Q ss_pred CCCEEEEeeecccccCCCCCCCchhHHHHHHHHHHHHHhcCCCCCceEEEEEeCCcCCCCCChHHHHhcCCc-cCCceEE
Q 002689 178 AENAILVSSHIDTVFAAEGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEEEGLNGAHSFVTQHPW-STTIRVA 256 (892)
Q Consensus 178 ~~~~VLl~AH~DSv~~spGA~Dd~sgva~mLE~ar~L~~~~~~p~~~I~flf~~aEE~gl~GS~~fv~~h~~-~~~v~a~ 256 (892)
.+..||+++|..+.. =|+||-||+|.+.-++++|+.. +.+.+-.|+|.. +-.||-.|..+|.. .++++..
T Consensus 177 ~~~eiLlst~lCHPS---maNdn~SG~all~~lak~l~~~--ktrysYRfvf~P----~TiGsi~wLsrnee~lkhvk~G 247 (435)
T COG4310 177 SKDEILLSTYLCHPS---MANDNLSGLALLTFLAKALKSL--KTRYSYRFVFAP----ETIGSIVWLSRNEECLKHVKHG 247 (435)
T ss_pred ccceeeeeecccChh---hccCccchHHHHHHHHHHHHhc--cceeeEEEEecc----cccchhhhHhcchhHHhhhhcc
Confidence 567799999999874 7999999999999999999875 467899999986 46899999988865 4799999
Q ss_pred EEeecccCCCCcceeecCCChhHHHHHHHH-ccCCCCcchhhhccccCCCCCCCChHHHhhcCCCeEEEEE-------ee
Q 002689 257 IDLEAMGIGGKSGLFQAGPHPWAVENFAAA-AKYPSGQVTAQDLFASGAITSATDFQVYKEVAGLSGLDFA-------YT 328 (892)
Q Consensus 257 INLD~~G~gG~~~lfq~g~~~~li~~~~~~-a~~p~~~~l~~~~f~~g~ips~TD~~~F~~~~GIPgld~a-------~~ 328 (892)
+.+.+.|.+|....-++.-+..+++..+.. ..+-. +-. .++ ..+|.++|-+.|.. ||+++- -+
T Consensus 248 lVlsClGD~g~~nykrtrrgna~iDki~~~tl~~~~-s~~--~~~--dF~p~G~DERQf~s----Pg~NLpvg~~~Rs~y 318 (435)
T COG4310 248 LVLSCLGDGGGPNYKRTRRGNALIDKIALHTLKHCG-SNF--KAA--DFLPYGSDERQFCS----PGFNLPVGGLQRSRY 318 (435)
T ss_pred eEEEEecCCCCccceeccccchHHHHHHHHHHhcCC-cCc--eee--ecccCCCchhhccC----CCcCCchhhhhHhhc
Confidence 999999987755544433333456555432 22222 111 222 26789999999975 444443 24
Q ss_pred CCCCCCCCCCcCcCCCCHHHHHHHHHHHHHHHHHHHcC
Q 002689 329 DKSAVYHTKNDKLDLLKPGSLQHLGENMLAFLLQAASS 366 (892)
Q Consensus 329 ~~~~~YHT~~Dt~d~id~~sLq~~g~~~l~lv~~La~a 366 (892)
++-.-|||..|+.+.|+++.|..--+.++.++..+-+.
T Consensus 319 G~f~~YHtSaDnL~fi~~e~L~~s~~~~memI~~lE~N 356 (435)
T COG4310 319 GDFDGYHTSADNLDFISPEGLAGSFQMMMEMILNLEIN 356 (435)
T ss_pred CCCccccCccccccccCHHHHHHHHHHHHHHHHHHHhc
Confidence 45568999999999999998888888888888877664
No 80
>PF05343 Peptidase_M42: M42 glutamyl aminopeptidase; InterPro: IPR008007 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M42 (glutamyl aminopeptidase family, clan MH). For members of this family and family M28 the predicted metal ligands occur in the same order in the sequence: H, D, E, D/E, H; and the active site residues occur in the motifs HXD and EE. ; PDB: 2WYR_C 2CF4_A 1VHO_A 3ISX_A 3KL9_G 1YLO_F 3CPX_C 1VHE_A 2GRE_F 1XFO_A ....
Probab=97.97 E-value=1.9e-05 Score=87.26 Aligned_cols=133 Identities=23% Similarity=0.289 Sum_probs=84.2
Q ss_pred CCCchhHHHHHHHHHHHHHhcCCCCCceEEEEEeCCcCCCCCChHHHHhcCCccCCceEEEEeecc------cCC-----
Q 002689 197 AGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAIDLEAM------GIG----- 265 (892)
Q Consensus 197 A~Dd~sgva~mLE~ar~L~~~~~~p~~~I~flf~~aEE~gl~GS~~fv~~h~~~~~v~a~INLD~~------G~g----- 265 (892)
+.||.+||++++|++|.+.+. ..+.+++|+|+.-||.|+.||+..+.+. +...+|.+|.. |..
T Consensus 132 alDdR~g~~~lle~l~~l~~~--~~~~~v~~v~tvqEEvG~rGA~~aa~~i----~PD~ai~vD~~~a~d~~~~~~~~~~ 205 (292)
T PF05343_consen 132 ALDDRAGCAVLLELLRELKEK--ELDVDVYFVFTVQEEVGLRGAKTAAFRI----KPDIAIAVDVTPAGDTPGSDEKEQG 205 (292)
T ss_dssp THHHHHHHHHHHHHHHHHTTS--S-SSEEEEEEESSCTTTSHHHHHHHHHH-----CSEEEEEEEEEESSSTTSTTTTSC
T ss_pred eCCchhHHHHHHHHHHHHhhc--CCCceEEEEEEeeeeecCcceeeccccc----CCCEEEEEeeeccCCCCCCchhhcc
Confidence 669999999999999999875 3569999999999999999999877442 23455555542 221
Q ss_pred ---CCcce-eecCC--ChhHHHHHHHHccCCCCcchhhhccccCCCCCCCChHHHhhc-CCCeEEEEEeeCCCCCCCCCC
Q 002689 266 ---GKSGL-FQAGP--HPWAVENFAAAAKYPSGQVTAQDLFASGAITSATDFQVYKEV-AGLSGLDFAYTDKSAVYHTKN 338 (892)
Q Consensus 266 ---G~~~l-fq~g~--~~~li~~~~~~a~~p~~~~l~~~~f~~g~ips~TD~~~F~~~-~GIPgld~a~~~~~~~YHT~~ 338 (892)
|+.+. +..++ ++.+.+...+.++. .+.....+.+. ..+||-..+... .|+|...+..-- .+.||+.
T Consensus 206 lG~Gp~i~~~D~~~i~~~~l~~~l~~~A~~-~~Ip~Q~~~~~----~ggTDa~~~~~~~~Gi~t~~i~iP~--ry~Hs~~ 278 (292)
T PF05343_consen 206 LGKGPVIRVGDSSMIPNPKLVDKLREIAEE-NGIPYQREVFS----GGGTDAGAIQLSGGGIPTAVISIPC--RYMHSPV 278 (292)
T ss_dssp TTS-EEEEEEETTEESHHHHHHHHHHHHHH-TT--EEEEEES----SSSSTHHHHHTSTTSSEEEEEEEEE--BSTTSTT
T ss_pred CCCCcEEEEccCCCCCCHHHHHHHHHHHHH-cCCCeEEEecC----CcccHHHHHHHcCCCCCEEEEeccc--ccCCCcc
Confidence 23332 22222 46666666555431 11111122332 357998888752 589999887532 2578886
Q ss_pred cCcC
Q 002689 339 DKLD 342 (892)
Q Consensus 339 Dt~d 342 (892)
-+.+
T Consensus 279 e~~~ 282 (292)
T PF05343_consen 279 EVID 282 (292)
T ss_dssp EEEE
T ss_pred eEEE
Confidence 5543
No 81
>KOG2276 consensus Metalloexopeptidases [Amino acid transport and metabolism]
Probab=97.94 E-value=9.7e-05 Score=82.70 Aligned_cols=142 Identities=21% Similarity=0.331 Sum_probs=99.5
Q ss_pred CHHHHHHHHHHHHhcCCC---CCCCHHHHHHHHHHHHHHHhhccccCCceeEEEEEEeccCCcccccccccccccccccc
Q 002689 85 SEFEAIKHVKALTELGPH---PVGSDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSD 161 (892)
Q Consensus 85 s~erA~~~L~~L~~igpr---~vGS~~~~~a~~yL~~~l~~ig~~a~~~~~ve~d~~~~~~g~~~~~g~~~~~~~~~y~~ 161 (892)
..++..+.|++..+|..- +.-...-.+..+|+.++++++|.. ++. .+. |.....+ +... .
T Consensus 14 ~~de~~~~L~e~v~iqsvs~dp~~r~~v~rm~~~~~~~l~~lG~~------~~l--~dl--g~q~~~~----g~~v---~ 76 (473)
T KOG2276|consen 14 NKDEFINTLREAVAIQSVSADPTKRLEVRRMADWLRDYLTKLGAP------LEL--VDL--GYQSLPD----GQIV---P 76 (473)
T ss_pred cHHHHHHHHHHHhcccccccCccccHHHHHHHHHHHHHHHHhCCc------eee--eec--ccCCCCC----Cccc---c
Confidence 457888899999887431 111223358999999999999932 221 111 1000001 0111 1
Q ss_pred cceEEEEEcCCCCCcCCCCEEEEeeecccccC---------------------CCCCCCchhHHHHHHHHHHHHHhcCCC
Q 002689 162 LNHIVLRIQPKYASEAAENAILVSSHIDTVFA---------------------AEGAGDCSSCVAVMLELARAMSQWAHG 220 (892)
Q Consensus 162 ~~NVi~~i~g~~~~~~~~~~VLl~AH~DSv~~---------------------spGA~Dd~sgva~mLE~ar~L~~~~~~ 220 (892)
..-++--..|+ +++++.+++-.|||.+|. ++|+.||+.-|+.-.++++++.+.|..
T Consensus 77 lPpvvl~~~Gs---dp~KktvlvYgHlDVqpA~~~DgW~TdPF~Lt~~~GkL~GRG~TDdkGPv~~wi~av~a~~~~g~~ 153 (473)
T KOG2276|consen 77 LPPVVLGVLGS---DPSKKTVLVYGHLDVQPANLEDGWNTDPFTLTEDDGKLFGRGATDDKGPVLSWIHAVKALQQLGID 153 (473)
T ss_pred cChhhhhcccC---CCCcceEEEEeeeeeeecCCCCCCcCCCeEEEEECCEEeccCcCCCCccchHHHHHHHHHHHhCcc
Confidence 12222222354 467899999999999985 399999999999999999999999999
Q ss_pred CCceEEEEEeCCcCCCCCChHHHHhc
Q 002689 221 FKNAVIFLFNTGEEEGLNGAHSFVTQ 246 (892)
Q Consensus 221 p~~~I~flf~~aEE~gl~GS~~fv~~ 246 (892)
++.+|+|+|-+-||.|..|-...++.
T Consensus 154 lpvnv~f~~EgmEEsgS~~L~~l~~~ 179 (473)
T KOG2276|consen 154 LPVNVVFVFEGMEESGSEGLDELIEK 179 (473)
T ss_pred ccceEEEEEEechhccCccHHHHHHH
Confidence 99999999999999998888776644
No 82
>KOG2657 consensus Transmembrane glycoprotein nicastrin [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]
Probab=97.66 E-value=0.00033 Score=80.44 Aligned_cols=188 Identities=15% Similarity=0.196 Sum_probs=125.1
Q ss_pred ccceEEEEEcCCCCC---cCCCCEEEEeeeccccc----CCCCCCCchhHHHHHHHHHHHHHhcC--CCCCceEEEEEeC
Q 002689 161 DLNHIVLRIQPKYAS---EAAENAILVSSHIDTVF----AAEGAGDCSSCVAVMLELARAMSQWA--HGFKNAVIFLFNT 231 (892)
Q Consensus 161 ~~~NVi~~i~g~~~~---~~~~~~VLl~AH~DSv~----~spGA~Dd~sgva~mLE~ar~L~~~~--~~p~~~I~flf~~ 231 (892)
+.+||..-.++-... +.-.++++..+-+|+.. .++||.---.+....|.++|+|++.+ ...++++.|+|+.
T Consensus 156 ~~ynvws~l~pi~ts~tnk~~~~vvv~tarmdsrsfF~n~s~Ga~S~~~slv~~laaa~al~r~pai~nl~rnV~f~~f~ 235 (596)
T KOG2657|consen 156 HSYNVWSFLTPIPTSPTNKTISKVVVVTARMDSRSFFPNISVGAVSVLTSLVSVLAAARALKRQPAINNLNRNVFFAFFN 235 (596)
T ss_pred CCccceeccCccccccccCcCcceeeeeeecccccccccccCCccccchhHHHHHHHHHHhccCcccccccceeEEEEee
Confidence 567888777653221 12268899999999964 46898889999999999999998742 3578999999999
Q ss_pred CcCCCCCChHHHHhcC-----Ccc-CC---ceEEEEeecccCC--CCcceeecCC-Ch----h---HHHHHHHHc-cCCC
Q 002689 232 GEEEGLNGAHSFVTQH-----PWS-TT---IRVAIDLEAMGIG--GKSGLFQAGP-HP----W---AVENFAAAA-KYPS 291 (892)
Q Consensus 232 aEE~gl~GS~~fv~~h-----~~~-~~---v~a~INLD~~G~g--G~~~lfq~g~-~~----~---li~~~~~~a-~~p~ 291 (892)
||-.+.+||..++-+. |.+ ++ +..++.+-.+|-+ ++-.++..+. .. . .++.+++.. .+++
T Consensus 236 get~~ylgS~r~~yeme~gk~pva~~s~~~iD~~LEiGqvg~~~s~kl~~~~d~~~~~sv~nqtld~L~~~ekSlrs~~f 315 (596)
T KOG2657|consen 236 GETLDYLGSGRAAYEMENGKFPVAIRSDNEIDYILEIGQVGVAKSRKLYVHVDGERYQSVKNQTLDVLDRIEKSLRSHAF 315 (596)
T ss_pred cceeeeccchhhhhHhhcCCCCeeeccCccchheeeecccccccCceEEEEeccchhhhHHHHHHHHHHHHHhcccccCe
Confidence 9999999999877444 222 33 7777777777652 3333444322 11 1 223333321 1222
Q ss_pred CcchhhhccccCCCCCCCChHHHhhcCCCeEEEEEeeCCC---CCCCCCCcCcCCCCHHHHH
Q 002689 292 GQVTAQDLFASGAITSATDFQVYKEVAGLSGLDFAYTDKS---AVYHTKNDKLDLLKPGSLQ 350 (892)
Q Consensus 292 ~~~l~~~~f~~g~ips~TD~~~F~~~~GIPgld~a~~~~~---~~YHT~~Dt~d~id~~sLq 350 (892)
. .+.++- ++.-+|..+=++..|+..++.++-++-.+.. -+||+.+|+.|+++...-.
T Consensus 316 ~-ll~~s~-~s~~lPPsSlqsFlR~dpn~saVvLad~~~~f~NKyYhSilDdaeNin~sy~~ 375 (596)
T KOG2657|consen 316 D-LLKPSG-SSDRLPPSSLQSFLRADPNVSAVVLADYGKEFENKYYHSILDDAENINDSYEK 375 (596)
T ss_pred e-eecCCC-CCCCCChHHHHHHHhhCCCcceEEeccCCchhhhhhhhhhhcchhhccchhhh
Confidence 1 111111 2224676776666665578999999876633 3899999999999987553
No 83
>PF04114 Gaa1: Gaa1-like, GPI transamidase component ; InterPro: IPR007246 GPI (glycosyl phosphatidyl inositol) transamidase is a multiprotein complex required for a terminal step of adding the glycosylphosphatidylinositol (GPI) anchor attachment onto proteins. Gpi16, Gpi8 and Gaa1 form a sub-complex of the GPI transamidase.; GO: 0016021 integral to membrane, 0042765 GPI-anchor transamidase complex
Probab=95.82 E-value=0.47 Score=56.68 Aligned_cols=185 Identities=15% Similarity=0.134 Sum_probs=113.7
Q ss_pred ccceEEEEEcCCCCCcCCCCEEEEeeecccccCCCCCCCchhHHHHHHHHHHHHHhcCCCCCceEEEEEeCCcCCCCCCh
Q 002689 161 DLNHIVLRIQPKYASEAAENAILVSSHIDTVFAAEGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEEEGLNGA 240 (892)
Q Consensus 161 ~~~NVi~~i~g~~~~~~~~~~VLl~AH~DSv~~spGA~Dd~sgva~mLE~ar~L~~~~~~p~~~I~flf~~aEE~gl~GS 240 (892)
++.||.+.++... .+..+.+++.+-+++.. | .-|..|++.+|.++|.+++..+ -.++|+|++.++| ..|.
T Consensus 2 ~G~nvy~i~rapR--~d~tEaivl~~~~~~~~---~-~~n~~~v~l~lal~~~~~~~~~-wsKDii~l~~~~~---~~g~ 71 (504)
T PF04114_consen 2 SGTNVYGILRAPR--GDGTEAIVLVVPWRDSD---G-EYNAGGVALALALARYFRRQSY-WSKDIIFLFTDDE---LAGM 71 (504)
T ss_pred CceEEEEEEecCC--CCCceeEEEEEecCCCC---c-ccchhhHHHHHHHHHHhhhchh-hhccEEEEecCCc---chHH
Confidence 4689999887542 34678899999988653 3 4459999999999999998653 4799999999865 4688
Q ss_pred HHHHhcCCc--------------cCCceEEEEeecccCCCCcc-eeecCC-----ChhHHHHHHHHccCC---CCcc---
Q 002689 241 HSFVTQHPW--------------STTIRVAIDLEAMGIGGKSG-LFQAGP-----HPWAVENFAAAAKYP---SGQV--- 294 (892)
Q Consensus 241 ~~fv~~h~~--------------~~~v~a~INLD~~G~gG~~~-lfq~g~-----~~~li~~~~~~a~~p---~~~~--- 294 (892)
++|++++-. +..++++||+|-.+...... +.-.|- |..+++...+.+.+. .+..
T Consensus 72 ~awl~~Yh~~~~~~~~~~~l~~~~G~i~aAl~le~~~~~~~~v~i~~eG~NGqLPNLDL~N~~~~i~~~~gi~~~~~~~~ 151 (504)
T PF04114_consen 72 QAWLEAYHDSNTKGLSSSPLPLRAGSIQAALVLEYPSDSFSSVEIKYEGLNGQLPNLDLVNTVVRIAEKEGIPMGVSLHL 151 (504)
T ss_pred HHHHHHHhCCCCccccccCCCCCCcceeEEEEEEecCCCccEEEEEEecCCCCCCCchHHHHHHHHHHhcCCCccccccc
Confidence 898876511 13689999999887654433 222233 334555443322111 0000
Q ss_pred -----------------hhhhccccCCCCCCCChHHHhhcCCCeEEEEEeeCCCCCCCCCCcCcCCCCHHHHHHHHHHHH
Q 002689 295 -----------------TAQDLFASGAITSATDFQVYKEVAGLSGLDFAYTDKSAVYHTKNDKLDLLKPGSLQHLGENML 357 (892)
Q Consensus 295 -----------------l~~~~f~~g~ips~TD~~~F~~~~GIPgld~a~~~~~~~YHT~~Dt~d~id~~sLq~~g~~~l 357 (892)
+..-+.+.+.-.....|..|.+ -+|.++.+.-... ..+ . .....+.|+.+.
T Consensus 152 ~~~~~~~~~~~~~~l~~l~~~~~~~a~g~p~g~H~~f~~-y~I~aiTl~~~~~------~~~--~---~~~~~~~gr~~E 219 (504)
T PF04114_consen 152 QPSDWHSNSDYESRLKTLLRGMLNQALGGPTGPHGAFLR-YRIDAITLRGVKS------TGP--G---PHDFTAFGRILE 219 (504)
T ss_pred cccccccccchHHHHHHHHHHHHHhccCCCCCCchhhhh-cCccEEEEecccC------CCC--C---CcCHHHHHHHHH
Confidence 0001111111113567888988 6899988832111 111 1 123456788888
Q ss_pred HHHHHHHcCC
Q 002689 358 AFLLQAASST 367 (892)
Q Consensus 358 ~lv~~La~a~ 367 (892)
..+|.+-|-.
T Consensus 220 ~~~RslNNLl 229 (504)
T PF04114_consen 220 GIFRSLNNLL 229 (504)
T ss_pred HHHHHHHHHH
Confidence 8888887743
No 84
>COG2195 PepD Di- and tripeptidases [Amino acid transport and metabolism]
Probab=95.78 E-value=0.017 Score=66.82 Aligned_cols=60 Identities=17% Similarity=0.078 Sum_probs=47.6
Q ss_pred CCchhHHHHHHHHHHHHHhcC-CCCCceEEEEEeCCcCCCCCChHHHHhcCCccCCceEEEEee
Q 002689 198 GDCSSCVAVMLELARAMSQWA-HGFKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAIDLE 260 (892)
Q Consensus 198 ~Dd~sgva~mLE~ar~L~~~~-~~p~~~I~flf~~aEE~gl~GS~~fv~~h~~~~~v~a~INLD 260 (892)
.|+++|.+.++++++.+.... .-+..+|.+.|+++||.|+.|++.+.-. .-.+....++|
T Consensus 143 aD~kAGia~i~~al~~~~~~~~~i~h~~i~~g~s~~Ee~g~rg~~~~~~a---~f~a~~ay~iD 203 (414)
T COG2195 143 ADDKAGIAEIMTALSVLREKHPEIPHGGIRGGFSPDEEIGGRGAANKDVA---RFLADFAYTLD 203 (414)
T ss_pred CcchhHHHHHHHHHHHHhhcCccccccCeEEEecchHHhhhhhhhhccHH---hhhcceeEecC
Confidence 488899999999999999653 3466799999999999999999988632 12445666777
No 85
>COG1473 AbgB Metal-dependent amidase/aminoacylase/carboxypeptidase [General function prediction only]
Probab=95.42 E-value=0.36 Score=55.77 Aligned_cols=125 Identities=18% Similarity=0.282 Sum_probs=88.8
Q ss_pred CCCCCHHHHHHHHHHHHHHHhhccccCCceeEEEEEEeccCCcccccccccccccccccccceEEEEEcCCCCCcCCCCE
Q 002689 102 HPVGSDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDLNHIVLRIQPKYASEAAENA 181 (892)
Q Consensus 102 r~vGS~~~~~a~~yL~~~l~~ig~~a~~~~~ve~d~~~~~~g~~~~~g~~~~~~~~~y~~~~NVi~~i~g~~~~~~~~~~ 181 (892)
+|-=+-++.++.+||.+.|+++|. ++ ++ .. + ..+-|++.++|. .+.+.
T Consensus 24 ~PEL~f~E~~Ta~~i~~~L~~~g~------~~-~~--~~--------~-----------~~TGvva~~~~g----~~g~t 71 (392)
T COG1473 24 HPELGFEEYRTAAYIAEKLEELGF------EV-VE--VG--------G-----------GKTGVVATLKGG----KPGPT 71 (392)
T ss_pred CCccchhHHHHHHHHHHHHHHcCC------ee-Ee--cc--------C-----------CceEEEEEEcCC----CCCCE
Confidence 444455667899999999999983 21 11 00 0 236789999875 34459
Q ss_pred EEEeeecccccC-----------CCC----CCCchhHHHHHHHHHHHHHhcCCCCCceEEEEEeCCcCCCCCChHHHHhc
Q 002689 182 ILVSSHIDTVFA-----------AEG----AGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEEEGLNGAHSFVTQ 246 (892)
Q Consensus 182 VLl~AH~DSv~~-----------spG----A~Dd~sgva~mLE~ar~L~~~~~~p~~~I~flf~~aEE~gl~GS~~fv~~ 246 (892)
|.+-|-||-.|. .+| -+=| .=.+++|-+++.|++....++.+|+|+|-.+||.+- |+...+++
T Consensus 72 IalRAD~DALPi~E~t~~~~~S~~~G~mHACGHD-~Hta~lLgaA~~L~~~~~~~~Gtv~~ifQPAEE~~~-Ga~~mi~~ 149 (392)
T COG1473 72 IALRADMDALPIQEETGLPFASKNPGVMHACGHD-GHTAILLGAALALAEHKDNLPGTVRLIFQPAEEGGG-GAKAMIED 149 (392)
T ss_pred EEEEeecccCccccccCCCcccCCCCCcccCCch-HHHHHHHHHHHHHHhhhhhCCcEEEEEecccccccc-cHHHHHhc
Confidence 999999999984 244 1122 336788899999988656789999999999999876 99999854
Q ss_pred CCccCC-ceEEEEeec
Q 002689 247 HPWSTT-IRVAIDLEA 261 (892)
Q Consensus 247 h~~~~~-v~a~INLD~ 261 (892)
-. .++ +.+++-+..
T Consensus 150 G~-~~~~vD~v~g~H~ 164 (392)
T COG1473 150 GV-FDDFVDAVFGLHP 164 (392)
T ss_pred CC-ccccccEEEEecC
Confidence 43 334 666666643
No 86
>PRK02813 putative aminopeptidase 2; Provisional
Probab=90.18 E-value=0.97 Score=52.92 Aligned_cols=141 Identities=14% Similarity=0.098 Sum_probs=83.0
Q ss_pred CCCCCchhHHHHHHHHHHHHHhcCCCCCceEEEEEeCCcCCCCC---ChHH-----------HHhcCC-----ccCCceE
Q 002689 195 EGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEEEGLN---GAHS-----------FVTQHP-----WSTTIRV 255 (892)
Q Consensus 195 pGA~Dd~sgva~mLE~ar~L~~~~~~p~~~I~flf~~aEE~gl~---GS~~-----------fv~~h~-----~~~~v~a 255 (892)
.++.||-.||.+++|+++.+.. +.++++++++-||.|.. ||+. -..... ..-.-..
T Consensus 230 s~~lDnr~~~~~~l~al~~~~~-----~~~~~~~~~d~EEVGs~~~~GA~s~~l~~~l~ri~~~~~~~~~~~~~~i~~s~ 304 (428)
T PRK02813 230 SGRLDNLSSCHAGLEALLAAAS-----DATNVLAAFDHEEVGSATKQGADSPFLEDVLERIVLALGGDREDFLRALARSF 304 (428)
T ss_pred EecchhHHHHHHHHHHHHhcCC-----CCeEEEEEEecCccCCCCCcccCchhHHHHHHHHHHhhcCchHHHHHhhCCCe
Confidence 5779999999999999986532 67999999999999988 7774 110000 1123356
Q ss_pred EEEeecccCC------------------CCcceee---c-CCChhHHHHHHHHc---cCCCCcchhhhccccCCCCCCCC
Q 002689 256 AIDLEAMGIG------------------GKSGLFQ---A-GPHPWAVENFAAAA---KYPSGQVTAQDLFASGAITSATD 310 (892)
Q Consensus 256 ~INLD~~G~g------------------G~~~lfq---~-g~~~~li~~~~~~a---~~p~~~~l~~~~f~~g~ips~TD 310 (892)
+|.+|++-+. |+.+-+. . .+++.....+.+.+ .-|. |.....+-.|++||
T Consensus 305 ~IS~DvahA~hPn~~~~~~~~~~~~lg~GpvIk~~~~~~y~t~~~~~a~~~~ia~~~~Ip~-----Q~~v~~~d~~gGst 379 (428)
T PRK02813 305 LISADMAHAVHPNYPEKHDPTHRPLLNKGPVIKINANQRYATDAESAAVFKLLCEKAGVPY-----QEFVNRSDMPCGST 379 (428)
T ss_pred EEEEeccCCCCCCCCCccCcccCccCCcCCeEEECCCCCcccCHHHHHHHHHHHHHcCCCE-----EEEEecCCCCCccH
Confidence 7777754221 2222111 0 12344443343332 2222 21112234567899
Q ss_pred hHHHhh-cCCCeEEEEEeeCCCCCCCCCCcCcCCCCHH
Q 002689 311 FQVYKE-VAGLSGLDFAYTDKSAVYHTKNDKLDLLKPG 347 (892)
Q Consensus 311 ~~~F~~-~~GIPgld~a~~~~~~~YHT~~Dt~d~id~~ 347 (892)
-.++.. ..|+|.+|+.--- -.-|++..+...-|..
T Consensus 380 ig~i~~s~~Gi~tvdiGiP~--l~MHS~~E~~~~~D~~ 415 (428)
T PRK02813 380 IGPITAARLGIRTVDVGAPM--LAMHSARELAGVKDHA 415 (428)
T ss_pred HHHHHHhCCCCcEEEeChhh--cccccHHHHccHHHHH
Confidence 998875 4799999886321 2468887766655444
No 87
>PTZ00371 aspartyl aminopeptidase; Provisional
Probab=88.01 E-value=3.5 Score=48.86 Aligned_cols=160 Identities=11% Similarity=0.032 Sum_probs=89.8
Q ss_pred CCCCCchhHHHHHHHHHHHHHhcC-CCCCceEEEEEeCCcCCCCCChHHHHhcCC-c-------cCCce-----------
Q 002689 195 EGAGDCSSCVAVMLELARAMSQWA-HGFKNAVIFLFNTGEEEGLNGAHSFVTQHP-W-------STTIR----------- 254 (892)
Q Consensus 195 pGA~Dd~sgva~mLE~ar~L~~~~-~~p~~~I~flf~~aEE~gl~GS~~fv~~h~-~-------~~~v~----------- 254 (892)
.++.||-.||.++||+++.+.... ..+....++++++-||.|..|+++-..... . +....
T Consensus 247 s~rlDnr~~~~~~l~al~~~~~~~~~~~~~~~v~~~~d~EEVGs~ga~GA~s~~l~d~l~ri~~~~~~~~~~~~~~~~~~ 326 (465)
T PTZ00371 247 SPRLDNLGSSFCAFKALTEAVESLGENSSNIRMVCLFDHEEVGSSSSQGAGSSLLPDTIERILSSLSASNNSSDDSFAKL 326 (465)
T ss_pred EecchhHHHHHHHHHHHHhccccccCCCCceEEEEEECCcCCCCCcchhccccccHHHHHHHHHhhccccccchhHHHHH
Confidence 467899999999999998765310 113444555559999999988877432211 0 01111
Q ss_pred ----EEEEeecccC------------------CCCcceee----cCCChhHHHHHHHHccCCCCcchhhhccccCCCCCC
Q 002689 255 ----VAIDLEAMGI------------------GGKSGLFQ----AGPHPWAVENFAAAAKYPSGQVTAQDLFASGAITSA 308 (892)
Q Consensus 255 ----a~INLD~~G~------------------gG~~~lfq----~g~~~~li~~~~~~a~~p~~~~l~~~~f~~g~ips~ 308 (892)
.+|..|++-+ +|+.+-+. ..+++.+...+.+.++. .+.. .|.....+-.|++
T Consensus 327 ~~~S~~IS~DvahA~hPn~~~~~d~~~~~~lg~GpvIk~~a~~~y~td~~~~a~i~~la~~-~~Ip-~Q~~~~~~d~~~G 404 (465)
T PTZ00371 327 MARSFLLSVDMAHAVHPNYPEKHQANHRPKFHEGIVIKYNANQRYATNGVTASLLKAIAKK-ANIP-IQEFVVKNDSPCG 404 (465)
T ss_pred HhccEEEEEecccccCCCCccccCCcCceeCCCCcEEEEeCCCCcccCHHHHHHHHHHHHH-cCCC-EEEEEecCCCCCc
Confidence 7788886432 12222222 11245555544443321 1111 1221222345778
Q ss_pred CChHHHhh-cCCCeEEEEEeeCCCCCCCCCCcCcCCCCHHHHHHHHHHHHHHHH
Q 002689 309 TDFQVYKE-VAGLSGLDFAYTDKSAVYHTKNDKLDLLKPGSLQHLGENMLAFLL 361 (892)
Q Consensus 309 TD~~~F~~-~~GIPgld~a~~~~~~~YHT~~Dt~d~id~~sLq~~g~~~l~lv~ 361 (892)
||-.++.. ..|||.+|+.--- -.-|++..+...-|.. ++.+.+.++..
T Consensus 405 sTig~i~~s~~Gi~tvDiGiP~--l~MHS~rE~~~~~D~~---~~~~l~~af~~ 453 (465)
T PTZ00371 405 STIGPILSSNLGIRTVDIGIPQ--LAMHSIREMCGVVDIY---YLVKLIKAFFT 453 (465)
T ss_pred chHHHHHHhCCCCcEEEechhh--cccccHHHHccHHHHH---HHHHHHHHHHH
Confidence 99888866 4799999876321 2469988777655554 44444444443
No 88
>PRK02256 putative aminopeptidase 1; Provisional
Probab=79.74 E-value=2.6 Score=49.85 Aligned_cols=56 Identities=18% Similarity=0.157 Sum_probs=43.0
Q ss_pred EEeeecccccCCCCCCCchhHHHHHHHHHHHHHhcCCCCCceEEEEEeCCcCCCCCChHHHH
Q 002689 183 LVSSHIDTVFAAEGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEEEGLNGAHSFV 244 (892)
Q Consensus 183 Ll~AH~DSv~~spGA~Dd~sgva~mLE~ar~L~~~~~~p~~~I~flf~~aEE~gl~GS~~fv 244 (892)
+++.+-|=+ +.++.||-.||.+++|+++.+. .++..+++++++-||.|+.|++.-.
T Consensus 246 ~~G~~~efI--~s~rLDNr~~~~~~leal~~~~----~~~~~~~~~~~dqEEVGs~ga~gA~ 301 (462)
T PRK02256 246 DVGLDRSLI--GAYGQDDRVCAYTSLEALLELE----NPEKTAVVLLVDKEEIGSEGNTGAQ 301 (462)
T ss_pred eecccccee--eccccccHHHHHHHHHHHHhcc----cCCCeEEEEEEcccccCCcchhhhc
Confidence 334444433 3688999999999999998653 3567999999999999988776644
No 89
>KOG3566 consensus Glycosylphosphatidylinositol anchor attachment protein GAA1 [Posttranslational modification, protein turnover, chaperones]
Probab=67.27 E-value=61 Score=39.19 Aligned_cols=93 Identities=19% Similarity=0.297 Sum_probs=67.4
Q ss_pred ccceEEEEEcCCCCCcCCCCEEEEeeecccccCCCCCCCchhHHHHHHHHHHHHHhcCCCCCceEEEEEeCCcCCCCCCh
Q 002689 161 DLNHIVLRIQPKYASEAAENAILVSSHIDTVFAAEGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEEEGLNGA 240 (892)
Q Consensus 161 ~~~NVi~~i~g~~~~~~~~~~VLl~AH~DSv~~spGA~Dd~sgva~mLE~ar~L~~~~~~p~~~I~flf~~aEE~gl~GS 240 (892)
++.||.+.+++-. ....+.+++..-|+.-. |. |..|++.++..++.+++..+ -.++|+|+++++ ...|-
T Consensus 119 ~G~NvyGilRAPR--gdgtEsivl~vP~~~~~---~~--~~~~v~l~lsla~~f~r~~y-WsKDII~v~~d~---~~~g~ 187 (617)
T KOG3566|consen 119 SGENVYGILRAPR--GDGTESIVLVVPYGRSS---GS--NSASVALLLSLADYFSRWVY-WSKDIIFVFTDG---PALGL 187 (617)
T ss_pred CCceEEEEEecCC--CCCcceEEEEEecccCC---Cc--chhHHHHHHHHHHHhcCCee-ecccEEEEEeCC---ccccH
Confidence 4789999997642 34567888888888653 33 47899999999999987532 468999999987 45677
Q ss_pred HHHHhcCCc-----------------cCCceEEEEeecccC
Q 002689 241 HSFVTQHPW-----------------STTIRVAIDLEAMGI 264 (892)
Q Consensus 241 ~~fv~~h~~-----------------~~~v~a~INLD~~G~ 264 (892)
.+|.+++.. +....+.+++|.-..
T Consensus 188 ~AwLeaYhd~~s~~~~~~ep~~i~~ragal~aal~l~~se~ 228 (617)
T KOG3566|consen 188 DAWLEAYHDILSLTGISVEPDEIQARAGALAAALVLEVSEK 228 (617)
T ss_pred HHHHHHhhccccccccccccccccccccceeeEEEEEeccc
Confidence 778766421 123467888887744
No 90
>PF10190 Tmemb_170: Putative transmembrane protein 170; InterPro: IPR019334 This entry represents a group of putative transmembrane proteins conserved from nematodes to humans. The protein is only approximately 130 amino acids in length. The function is unknown.
Probab=51.46 E-value=1.4e+02 Score=28.54 Aligned_cols=50 Identities=8% Similarity=-0.041 Sum_probs=35.3
Q ss_pred HHhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccc
Q 002689 420 TASLVMGGYPAAVSLALTCLSAILMLVFSVSFAVVIAFILPQISSSPVPYV 470 (892)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~va~~~~~~~~~~~~w~ 470 (892)
...+.+.+.....++.+...+.+.....+...++++|.++.+- +..|++.
T Consensus 31 ~~~lRkhk~~~f~pi~~l~mg~l~p~~~G~itSa~IA~vY~a~-~~~M~~~ 80 (105)
T PF10190_consen 31 FFTLRKHKFGRFIPIVILLMGVLGPLTGGSITSAAIAGVYRAA-GFRMSTW 80 (105)
T ss_pred HHHHhhccchhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHc-CCcccHH
Confidence 3344444444566666666666777888888899999999865 6888875
No 91
>PRK12821 aspartyl/glutamyl-tRNA amidotransferase subunit C-like protein; Provisional
Probab=50.51 E-value=4.9e+02 Score=31.04 Aligned_cols=29 Identities=17% Similarity=0.179 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHhhhc
Q 002689 584 KLATLLLGLAVPVLVSAGN--FIRLANVIVAIV 614 (892)
Q Consensus 584 ~~~~~~~~~~~P~l~~~~~--~~~~~~v~ip~~ 614 (892)
|+.+-+ +..|+++..-. .+..+.+..|+|
T Consensus 320 w~~~r~--~~~p~~~~~~~~vi~pi~~~~~p~~ 350 (477)
T PRK12821 320 WLLIRL--LFAPAIFLLDIIVIYPILLLLTPIM 350 (477)
T ss_pred HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444 68888865543 344455667887
No 92
>PF05620 DUF788: Protein of unknown function (DUF788); InterPro: IPR008506 This family consists of several eukaryotic proteins of unknown function.
Probab=43.36 E-value=2.7e+02 Score=28.55 Aligned_cols=15 Identities=33% Similarity=0.503 Sum_probs=12.5
Q ss_pred hhHHHHHHHHHHHHH
Q 002689 552 STFIALFWLVPPAFA 566 (892)
Q Consensus 552 Say~~~~~~~~~~~~ 566 (892)
|.|+.++|+++|+++
T Consensus 113 s~~~w~l~LvIP~ya 127 (170)
T PF05620_consen 113 SNKFWWLYLVIPGYA 127 (170)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888888888888876
No 93
>COG3152 Predicted membrane protein [Function unknown]
Probab=42.29 E-value=1.4e+02 Score=29.23 Aligned_cols=24 Identities=17% Similarity=0.018 Sum_probs=15.5
Q ss_pred hccCCCCCCchHHHHHHHHHHHHHHH
Q 002689 573 TLTPVRFPRPLKLATLLLGLAVPVLV 598 (892)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~P~l~ 598 (892)
...++||++.. .-+.+.+.+|++.
T Consensus 71 ~vrRLHD~g~s--gw~~Ll~lip~vg 94 (125)
T COG3152 71 TVRRLHDRGRS--GWWALLALIPVVG 94 (125)
T ss_pred HHHHHHhcCCc--hHHHHHHHHHHHH
Confidence 44567887766 3455556778776
No 94
>PF10337 DUF2422: Protein of unknown function (DUF2422); InterPro: IPR018823 This domain is found in proteins conserved in fungi. Their function is not known. This entry represents the N-terminal half of some member proteins which contain IPR018820 from INTERPRO at their C terminus.
Probab=40.78 E-value=3.6e+02 Score=31.93 Aligned_cols=30 Identities=20% Similarity=0.111 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 002689 586 ATLLLGLAVPVLVSAGNFIRLANVIVAIVV 615 (892)
Q Consensus 586 ~~~~~~~~~P~l~~~~~~~~~~~v~ip~~~ 615 (892)
..+.-.++.|+++...+....-.++.|...
T Consensus 188 ~~l~~~ll~P~~ig~ai~~~vslliFP~ss 217 (459)
T PF10337_consen 188 YTLGKTLLKPFLIGIAIALVVSLLIFPESS 217 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHheeecCCCc
Confidence 445555677777777766666656666554
No 95
>KOG3533 consensus Inositol 1,4,5-trisphosphate receptor [Signal transduction mechanisms]
Probab=39.13 E-value=7.7e+02 Score=33.38 Aligned_cols=20 Identities=20% Similarity=0.408 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHhhhccC
Q 002689 443 LMLVFSVSFAVVIAFILPQI 462 (892)
Q Consensus 443 l~~~~~~~~~~~va~~~~~~ 462 (892)
+++-+++...++||+++|.-
T Consensus 2260 isFn~av~iN~lVAffYPf~ 2279 (2706)
T KOG3533|consen 2260 ISFNLAVIINALVAFFYPFP 2279 (2706)
T ss_pred hhhhHHHHHHHHHHhccCCC
Confidence 35667788889999999954
No 96
>PF05656 DUF805: Protein of unknown function (DUF805); InterPro: IPR008523 This entry is represented by Lactobacillus phage LBR48, DUF805. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; GO: 0016021 integral to membrane
Probab=38.89 E-value=2.5e+02 Score=26.42 Aligned_cols=13 Identities=8% Similarity=-0.169 Sum_probs=7.8
Q ss_pred HHhccCCCCCCch
Q 002689 571 EATLTPVRFPRPL 583 (892)
Q Consensus 571 ~~~~~~~~~~~~~ 583 (892)
...+.++||.+..
T Consensus 64 al~vRRlhD~G~s 76 (120)
T PF05656_consen 64 ALTVRRLHDIGRS 76 (120)
T ss_pred HHHhhhhhcCCCC
Confidence 4455667876544
No 97
>TIGR00203 cydB cytochrome d oxidase, subunit II (cydB). part of a two component cytochrome D terminal complex. Terminal reaction in the aerobic respiratory chain.
Probab=37.96 E-value=7.1e+02 Score=29.03 Aligned_cols=27 Identities=11% Similarity=0.208 Sum_probs=17.4
Q ss_pred CCCeEEeeccCce-EEEEechhHHHHHH
Q 002689 383 HETAVYFDILGTY-MVLYRQGFANMLHN 409 (892)
Q Consensus 383 ~~~~VyFd~~g~~-~v~y~~~~~~~l~~ 409 (892)
+++-||.=+.|.. |-.+|...+.++..
T Consensus 58 dgNeVWLV~~gg~lFaaFP~~ya~lfs~ 85 (378)
T TIGR00203 58 DGNQVWLLTAGGAIFAAWPNVYAAAFSG 85 (378)
T ss_pred ccceehhHHHHHHHHHhhHHHHHHHHHH
Confidence 4666777655443 66688887766543
No 98
>PRK08651 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=32.25 E-value=89 Score=35.66 Aligned_cols=56 Identities=11% Similarity=0.201 Sum_probs=43.8
Q ss_pred CCCCChHHHhhcCCCeEEEEEeeCCCCCCCCCCcCcCCCCHHHHHHHHHHHHHHHHHHHcC
Q 002689 306 TSATDFQVYKEVAGLSGLDFAYTDKSAVYHTKNDKLDLLKPGSLQHLGENMLAFLLQAASS 366 (892)
Q Consensus 306 ps~TD~~~F~~~~GIPgld~a~~~~~~~YHT~~Dt~d~id~~sLq~~g~~~l~lv~~La~a 366 (892)
...||...|.+ .|+|.+.+... +...-|++. |+++.+.+....+....++..|++.
T Consensus 338 ~g~tD~~~~~~-~gip~v~~Gpg-~~~~~H~~~---E~i~~~~l~~~~~i~~~~i~~l~~~ 393 (394)
T PRK08651 338 LGGTDARFFGA-KGIPTVVYGPG-ELELAHAPD---EYVEVKDVEKAAKVYEEVLKRLAKG 393 (394)
T ss_pred cCcccHHHHhh-CCCcEEEECCC-ChHhcCCCC---ceeEHHHHHHHHHHHHHHHHHhhcC
Confidence 46799999987 79999755321 223567765 7889999999999999999999874
No 99
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=30.46 E-value=17 Score=40.04 Aligned_cols=13 Identities=23% Similarity=0.703 Sum_probs=0.0
Q ss_pred ccchhHHHHHHHH
Q 002689 549 KIGSTFIALFWLV 561 (892)
Q Consensus 549 ~i~Say~~~~~~~ 561 (892)
.|=..-+=++|++
T Consensus 162 aWfT~L~dL~WL~ 174 (381)
T PF05297_consen 162 AWFTILVDLYWLL 174 (381)
T ss_dssp -------------
T ss_pred HHHHHHHHHHHHH
Confidence 3444444455655
No 100
>PRK07522 acetylornithine deacetylase; Provisional
Probab=26.58 E-value=1.6e+02 Score=33.49 Aligned_cols=74 Identities=12% Similarity=0.099 Sum_probs=50.9
Q ss_pred ChhHHHHHHHHccCCCCcchhhhccccCCCCCCCChHHHhhcCCCeEEEEEeeCCCCCCCCCCcCcCCCCHHHHHHHHHH
Q 002689 276 HPWAVENFAAAAKYPSGQVTAQDLFASGAITSATDFQVYKEVAGLSGLDFAYTDKSAVYHTKNDKLDLLKPGSLQHLGEN 355 (892)
Q Consensus 276 ~~~li~~~~~~a~~p~~~~l~~~~f~~g~ips~TD~~~F~~~~GIPgld~a~~~~~~~YHT~~Dt~d~id~~sLq~~g~~ 355 (892)
+..+++.++++...+... ..+..||-..|.. .|+|.+.+... +....||+. |+++.+.+....+.
T Consensus 311 ~~~~v~~~~~~~~~~~~~----------~~~~~td~~~~~~-~gip~v~~Gpg-~~~~~H~~~---E~i~i~~l~~~~~~ 375 (385)
T PRK07522 311 DAAAARLVRALTGDNDLR----------KVAYGTEAGLFQR-AGIPTVVCGPG-SIEQAHKPD---EFVELAQLAACEAF 375 (385)
T ss_pred CcHHHHHHHHHhCCCCcc----------eEeeecchHHhcc-CCCCEEEECCC-ChhhCCCCC---ccccHHHHHHHHHH
Confidence 345677776654332210 1234799999986 89999854432 223678865 78999999999999
Q ss_pred HHHHHHHHH
Q 002689 356 MLAFLLQAA 364 (892)
Q Consensus 356 ~l~lv~~La 364 (892)
+..++..+|
T Consensus 376 ~~~~~~~~~ 384 (385)
T PRK07522 376 LRRLLASLA 384 (385)
T ss_pred HHHHHHHHh
Confidence 999988876
No 101
>TIGR02921 PEP_integral PEP-CTERM family integral membrane protein. Members of this protein family, found in three different species so far, have a PEP-CTERM sequence at the carboxyl-terminus (see model TIGR02595), but are unusual among PEP-CTERM proteins in having multiple predicted transmembrane segments. The function is unknown. It is proposed that a member of the EpsH family, to be designated exosortase (see TIGR02602), recognizes and cleaves PEP-CTERM proteins in a manner analogous to the cleavage of LPXTG proteins by sortase (see Haft, et al., 2006).
Probab=23.47 E-value=1.5e+03 Score=28.17 Aligned_cols=28 Identities=21% Similarity=0.211 Sum_probs=20.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002689 473 PWLAVGLFAAPAFLGALTGQHLGYIILK 500 (892)
Q Consensus 473 ~~l~igly~~p~l~g~~~~~~l~~~~~~ 500 (892)
..|++|+|+...++-..+|.+.+|..+.
T Consensus 147 ~ml~~giy~~~~l~~~~ip~~~gff~l~ 174 (952)
T TIGR02921 147 LMLLFGIYAAALLAFFAIPAAAGFFELL 174 (952)
T ss_pred HHHHHHHHHHHHHHHHhhhHHhHHHHHH
Confidence 3578899988888777788777776553
No 102
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=23.36 E-value=1.1e+02 Score=30.99 Aligned_cols=10 Identities=10% Similarity=-0.124 Sum_probs=5.2
Q ss_pred chhhhHHHHH
Q 002689 38 VRSAKRSGLA 47 (892)
Q Consensus 38 ~~~~~~~~~~ 47 (892)
-.|++|++..
T Consensus 58 s~RM~rRm~~ 67 (153)
T PF11947_consen 58 SNRMLRRMAV 67 (153)
T ss_pred HHHHHHHHHH
Confidence 4555555443
No 103
>PRK08596 acetylornithine deacetylase; Validated
Probab=21.42 E-value=1.7e+02 Score=34.06 Aligned_cols=56 Identities=18% Similarity=0.215 Sum_probs=45.1
Q ss_pred CCCCChHHHhhcCCCeEEEEEeeCCCCCCCCCCcCcCCCCHHHHHHHHHHHHHHHHHHHcC
Q 002689 306 TSATDFQVYKEVAGLSGLDFAYTDKSAVYHTKNDKLDLLKPGSLQHLGENMLAFLLQAASS 366 (892)
Q Consensus 306 ps~TD~~~F~~~~GIPgld~a~~~~~~~YHT~~Dt~d~id~~sLq~~g~~~l~lv~~La~a 366 (892)
+..||...|.+ .|+|++.+... .....|++. |+++.+.+....+.+..++..+...
T Consensus 363 ~g~tD~~~~~~-~gip~v~~Gpg-~~~~~H~~~---E~v~i~~~~~~~~~~~~~l~~~~~~ 418 (421)
T PRK08596 363 TTVTDGGWFAE-FGIPAVIYGPG-TLEEAHSVN---EKVEIEQLIEYTKVITAFIYEWCHT 418 (421)
T ss_pred eeecchhhhhh-cCCCEEEECCC-cccccCCCC---ceEEHHHHHHHHHHHHHHHHHHhCC
Confidence 45799999988 89999866543 234678865 8899999999999999999888754
No 104
>PF06781 UPF0233: Uncharacterised protein family (UPF0233); InterPro: IPR009619 This is a group of proteins of unknown function.
Probab=21.15 E-value=1.6e+02 Score=27.21 Aligned_cols=21 Identities=14% Similarity=0.015 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHhhhhcccC
Q 002689 49 TVAFAAFVYATYGVYYYQYEH 69 (892)
Q Consensus 49 l~~~ll~~~~~~~v~~~~~~~ 69 (892)
+.+.++++-..|+++.|....
T Consensus 36 ~m~~lmllGL~WiVvyYi~~~ 56 (87)
T PF06781_consen 36 LMLGLMLLGLLWIVVYYISGG 56 (87)
T ss_pred HHHHHHHHHHHHHhhhhcccC
Confidence 334444444455565555443
No 105
>PF03176 MMPL: MMPL family; InterPro: IPR004869 Proteins of this entry are putative integral membrane proteins from bacteria. Several of the members are mycobacterial proteins. Many of the proteins contain two copies of this aligned region. The function of these proteins is not known, although it has been suggested that they may be involved in lipid transport [].; GO: 0016020 membrane
Probab=21.14 E-value=1.2e+03 Score=25.99 Aligned_cols=34 Identities=18% Similarity=0.504 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccc
Q 002689 435 ALTCLSAILMLVFSVSFAVVIAFILPQISSSPVPYVAN 472 (892)
Q Consensus 435 ~~~~~~~~l~~~~~~~~~~~va~~~~~~~~~~~~w~~~ 472 (892)
++.++..+++++.++++. +.+.. ..+.+++|+..
T Consensus 171 l~~l~~~~~~~~~~~g~~---~~~~~-~~~~~~~~~~~ 204 (333)
T PF03176_consen 171 LLPLLPVLLSIVWTLGLV---ALLMG-LLGIPLSWITP 204 (333)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHH-hhccccceeeh
Confidence 344445555555554441 11222 22456777644
No 106
>PF11992 DUF3488: Domain of unknown function (DUF3488); InterPro: IPR021878 This presumed domain is functionally uncharacterised. This domain is found in bacteria. This domain is typically between 323 to 339 amino acids in length. This domain is found associated with PF01841 from PFAM. This domain has a conserved PLW sequence motif. This domain contains 6 transmembrane helices.
Probab=20.51 E-value=1.2e+03 Score=26.13 Aligned_cols=16 Identities=38% Similarity=0.411 Sum_probs=9.1
Q ss_pred hHHHHHHHHHHHHHHH
Q 002689 583 LKLATLLLGLAVPVLV 598 (892)
Q Consensus 583 ~~~~~~~~~~~~P~l~ 598 (892)
.+....++.+++|+..
T Consensus 156 ~~~~~~l~l~alpl~~ 171 (325)
T PF11992_consen 156 LRRALKLLLQALPLAL 171 (325)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445556666666554
No 107
>PRK10263 DNA translocase FtsK; Provisional
Probab=20.33 E-value=7e+02 Score=33.78 Aligned_cols=10 Identities=30% Similarity=0.640 Sum_probs=4.9
Q ss_pred cCCCcccccC
Q 002689 865 KLPAWCSLFG 874 (892)
Q Consensus 865 ~fP~wa~~~g 874 (892)
.+.+|-.+-.
T Consensus 522 ~~~~~~~~~~ 531 (1355)
T PRK10263 522 QLAAWYQPIP 531 (1355)
T ss_pred cccccccCCC
Confidence 4555555433
No 108
>PF07466 DUF1517: Protein of unknown function (DUF1517); InterPro: IPR010903 This family consists of several hypothetical glycine rich plant and bacterial proteins of around 300 residues in length. The function of this family is unknown.
Probab=20.14 E-value=1.2e+03 Score=26.00 Aligned_cols=47 Identities=15% Similarity=0.080 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHhcCCCCCceEEEEEeCCcCCCCCChHHHHhcCCcc
Q 002689 204 VAVMLELARAMSQWAHGFKNAVIFLFNTGEEEGLNGAHSFVTQHPWS 250 (892)
Q Consensus 204 va~mLE~ar~L~~~~~~p~~~I~flf~~aEE~gl~GS~~fv~~h~~~ 250 (892)
...+=|+++.|......--..+.+++...+|...+-....+..+|..
T Consensus 240 ~~~l~~aL~~l~~~~~~~l~a~evlWtP~~~gd~Ls~~ell~~yP~L 286 (289)
T PF07466_consen 240 AEDLREALRKLGSISSDRLLAVEVLWTPQAEGDTLSEDELLADYPDL 286 (289)
T ss_pred HHHHHHHHHHHhCCChhheeeEEEEECCCCCCCccCHHHHHHhCccc
Confidence 34566666766643222346799999999999999999888888753
Done!