Query 002690
Match_columns 892
No_of_seqs 277 out of 676
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 05:09:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002690.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002690hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02830 UDP-sugar pyrophospho 100.0 2E-120 5E-125 1051.1 52.4 576 123-828 14-613 (615)
2 PLN02435 probable UDP-N-acetyl 100.0 6.4E-90 1.4E-94 779.5 34.1 438 135-712 21-472 (493)
3 cd06424 UGGPase UGGPase cataly 100.0 1.3E-82 2.8E-87 688.3 27.1 307 289-622 1-314 (315)
4 PTZ00339 UDP-N-acetylglucosami 100.0 1.2E-81 2.7E-86 713.2 34.3 449 140-712 2-463 (482)
5 KOG2388 UDP-N-acetylglucosamin 100.0 4.9E-77 1.1E-81 661.0 22.1 433 135-705 2-445 (477)
6 PLN02474 UTP--glucose-1-phosph 100.0 6.8E-75 1.5E-79 654.0 33.8 379 282-774 73-457 (469)
7 PF01704 UDPGP: UTP--glucose-1 100.0 9E-73 2E-77 633.5 25.9 408 223-752 2-420 (420)
8 cd04193 UDPGlcNAc_PPase UDPGlc 100.0 1.1E-71 2.3E-76 607.5 26.2 315 277-623 2-323 (323)
9 cd00897 UGPase_euk Eukaryotic 100.0 1.2E-67 2.6E-72 569.5 24.4 283 286-622 1-287 (300)
10 KOG2638 UDP-glucose pyrophosph 100.0 2E-64 4.2E-69 548.4 30.4 459 154-774 18-483 (498)
11 COG4284 UDP-glucose pyrophosph 100.0 6.3E-61 1.4E-65 533.8 25.9 386 135-625 14-409 (472)
12 cd04180 UGPase_euk_like Eukary 100.0 4.6E-56 9.9E-61 473.4 24.8 235 289-548 1-241 (266)
13 PRK05293 glgC glucose-1-phosph 97.7 0.0018 3.9E-08 72.6 18.5 196 287-548 2-205 (380)
14 PRK00844 glgC glucose-1-phosph 97.6 0.0037 8E-08 71.3 19.9 206 285-548 2-212 (407)
15 cd06915 NTP_transferase_WcbM_l 97.6 0.0037 8.1E-08 63.5 17.4 177 291-547 1-181 (223)
16 cd04197 eIF-2B_epsilon_N The N 97.5 0.0033 7.2E-08 65.1 16.3 124 291-465 3-129 (217)
17 cd02540 GT2_GlmU_N_bac N-termi 97.5 0.0035 7.5E-08 64.5 16.2 181 291-548 1-182 (229)
18 PRK14352 glmU bifunctional N-a 97.5 0.0033 7.1E-08 73.0 17.7 186 288-548 4-191 (482)
19 cd04181 NTP_transferase NTP_tr 97.5 0.0061 1.3E-07 61.9 17.5 177 292-548 2-181 (217)
20 TIGR02092 glgD glucose-1-phosp 97.5 0.002 4.4E-08 72.0 14.6 193 288-548 2-203 (369)
21 PRK02862 glgC glucose-1-phosph 97.5 0.0055 1.2E-07 70.5 18.5 209 288-548 3-225 (429)
22 cd04189 G1P_TT_long G1P_TT_lon 97.4 0.0061 1.3E-07 63.2 17.1 175 290-545 2-180 (236)
23 PRK14360 glmU bifunctional N-a 97.4 0.0043 9.3E-08 70.9 17.4 185 289-548 2-186 (450)
24 PRK14356 glmU bifunctional N-a 97.4 0.0046 9.9E-08 70.9 17.4 184 288-548 5-189 (456)
25 PRK14359 glmU bifunctional N-a 97.4 0.0091 2E-07 67.8 19.3 178 289-548 3-180 (430)
26 PRK15480 glucose-1-phosphate t 97.4 0.01 2.2E-07 65.3 18.4 181 288-545 3-186 (292)
27 PRK05450 3-deoxy-manno-octulos 97.3 0.019 4.2E-07 60.1 19.1 188 288-548 2-194 (245)
28 PRK14353 glmU bifunctional N-a 97.3 0.011 2.4E-07 67.5 18.0 184 288-548 5-189 (446)
29 PRK14358 glmU bifunctional N-a 97.2 0.011 2.4E-07 69.0 17.7 148 287-497 6-154 (481)
30 PRK14355 glmU bifunctional N-a 97.2 0.012 2.7E-07 67.8 17.9 185 288-548 3-188 (459)
31 PF00483 NTP_transferase: Nucl 97.2 0.0035 7.6E-08 65.3 12.2 185 292-548 3-192 (248)
32 COG1207 GlmU N-acetylglucosami 97.2 0.0068 1.5E-07 69.5 14.9 186 288-549 2-189 (460)
33 cd02509 GDP-M1P_Guanylyltransf 97.2 0.0057 1.2E-07 66.3 13.7 197 291-549 3-208 (274)
34 cd06426 NTP_transferase_like_2 97.2 0.018 3.9E-07 59.1 16.6 173 291-546 1-176 (220)
35 PRK00725 glgC glucose-1-phosph 97.2 0.017 3.7E-07 66.4 18.2 201 287-548 14-224 (425)
36 TIGR01207 rmlA glucose-1-phosp 97.2 0.015 3.1E-07 63.9 16.8 176 291-543 2-180 (286)
37 PLN02241 glucose-1-phosphate a 97.1 0.016 3.4E-07 66.9 17.8 215 287-548 2-231 (436)
38 cd02508 ADP_Glucose_PP ADP-glu 97.1 0.0064 1.4E-07 62.2 12.8 137 292-473 2-144 (200)
39 cd02538 G1P_TT_short G1P_TT_sh 97.1 0.0099 2.1E-07 62.3 14.1 176 290-543 2-181 (240)
40 TIGR01173 glmU UDP-N-acetylglu 97.0 0.01 2.2E-07 67.7 14.9 61 291-372 3-63 (451)
41 TIGR01208 rmlA_long glucose-1- 97.0 0.035 7.5E-07 61.8 17.7 176 291-544 2-180 (353)
42 cd06428 M1P_guanylylT_A_like_N 96.9 0.044 9.5E-07 58.2 17.6 182 292-546 2-190 (257)
43 TIGR02623 G1P_cyt_trans glucos 96.9 0.066 1.4E-06 57.3 18.6 193 291-547 2-198 (254)
44 PRK14357 glmU bifunctional N-a 96.9 0.025 5.5E-07 64.7 16.3 176 291-548 3-179 (448)
45 cd06425 M1P_guanylylT_B_like_N 96.8 0.051 1.1E-06 56.7 16.8 179 291-546 3-186 (233)
46 cd02517 CMP-KDO-Synthetase CMP 96.8 0.12 2.6E-06 54.0 19.5 185 288-548 1-191 (239)
47 PRK10122 GalU regulator GalF; 96.8 0.047 1E-06 60.2 16.6 63 288-371 3-68 (297)
48 TIGR02091 glgC glucose-1-phosp 96.8 0.042 9E-07 61.2 16.4 196 292-548 2-206 (361)
49 TIGR00454 conserved hypothetic 96.7 0.0027 5.9E-08 65.1 5.8 61 290-372 2-62 (183)
50 cd02524 G1P_cytidylyltransfera 96.7 0.086 1.9E-06 56.0 17.2 190 291-545 1-198 (253)
51 PRK13385 2-C-methyl-D-erythrit 96.6 0.0031 6.8E-08 66.0 5.8 65 289-372 3-67 (230)
52 PRK13368 3-deoxy-manno-octulos 96.6 0.14 2.9E-06 53.6 17.6 103 288-452 2-104 (238)
53 cd04198 eIF-2B_gamma_N The N-t 96.4 0.041 8.9E-07 57.1 12.7 129 291-473 3-134 (214)
54 PRK09451 glmU bifunctional N-a 96.4 0.066 1.4E-06 61.8 15.5 179 288-548 5-185 (456)
55 TIGR01099 galU UTP-glucose-1-p 96.4 0.13 2.8E-06 54.6 16.3 61 291-372 3-66 (260)
56 PRK14354 glmU bifunctional N-a 96.4 0.11 2.4E-06 59.6 17.0 182 289-548 3-185 (458)
57 COG2266 GTP:adenosylcobinamide 96.3 0.0055 1.2E-07 63.0 5.4 61 290-373 2-62 (177)
58 PLN02728 2-C-methyl-D-erythrit 96.3 0.0058 1.3E-07 66.0 5.9 43 287-336 23-65 (252)
59 PF01128 IspD: 2-C-methyl-D-er 96.3 0.0043 9.4E-08 65.9 4.8 65 289-372 1-65 (221)
60 cd06422 NTP_transferase_like_1 96.2 0.012 2.6E-07 60.8 7.4 66 291-378 2-70 (221)
61 cd04182 GT_2_like_f GT_2_like_ 96.2 0.0064 1.4E-07 60.1 5.0 38 289-335 1-38 (186)
62 TIGR01105 galF UTP-glucose-1-p 96.2 0.011 2.5E-07 65.1 7.4 64 288-372 3-69 (297)
63 cd02523 PC_cytidylyltransferas 96.2 0.099 2.1E-06 54.3 13.8 60 292-372 2-64 (229)
64 COG0746 MobA Molybdopterin-gua 96.1 0.012 2.6E-07 61.2 6.6 100 288-453 4-103 (192)
65 TIGR01479 GMP_PMI mannose-1-ph 96.0 0.097 2.1E-06 61.3 14.3 195 291-549 3-210 (468)
66 COG1213 Predicted sugar nucleo 96.0 0.017 3.7E-07 62.0 7.4 66 290-375 5-70 (239)
67 PRK00560 molybdopterin-guanine 96.0 0.0075 1.6E-07 62.2 4.4 39 288-335 8-47 (196)
68 cd02513 CMP-NeuAc_Synthase CMP 96.0 0.14 3E-06 52.6 13.6 39 288-336 1-39 (223)
69 TIGR03310 matur_ygfJ molybdenu 95.7 0.017 3.6E-07 57.7 5.3 48 291-358 2-49 (188)
70 PLN02917 CMP-KDO synthetase 95.6 0.21 4.6E-06 55.1 14.4 187 288-548 47-237 (293)
71 PF12804 NTP_transf_3: MobA-li 95.6 0.0083 1.8E-07 58.6 2.8 48 291-358 1-48 (160)
72 TIGR02665 molyb_mobA molybdopt 95.5 0.012 2.6E-07 59.0 3.7 38 289-334 1-38 (186)
73 cd02503 MobA MobA catalyzes th 95.5 0.012 2.5E-07 58.8 3.4 48 290-358 2-49 (181)
74 TIGR00453 ispD 2-C-methyl-D-er 95.3 0.013 2.9E-07 60.3 3.4 38 291-335 2-39 (217)
75 cd02516 CDP-ME_synthetase CDP- 95.3 0.014 3.1E-07 59.8 3.5 41 289-336 1-41 (218)
76 TIGR03202 pucB xanthine dehydr 95.2 0.017 3.8E-07 58.4 3.7 37 290-335 2-38 (190)
77 PRK00155 ispD 2-C-methyl-D-ery 95.2 0.018 3.9E-07 60.0 3.9 41 288-335 3-43 (227)
78 PRK02726 molybdopterin-guanine 95.2 0.019 4E-07 59.4 4.0 39 288-335 7-45 (200)
79 cd02507 eIF-2B_gamma_N_like Th 95.1 0.58 1.3E-05 48.8 14.9 63 291-374 3-68 (216)
80 COG1209 RfbA dTDP-glucose pyro 95.1 0.48 1.1E-05 52.2 14.6 159 292-513 4-165 (286)
81 PRK00317 mobA molybdopterin-gu 95.1 0.02 4.4E-07 58.1 3.9 39 288-334 3-41 (193)
82 PRK14490 putative bifunctional 95.0 0.037 7.9E-07 62.7 6.1 40 287-335 173-212 (369)
83 PRK14489 putative bifunctional 94.6 0.036 7.8E-07 62.8 4.6 40 287-334 4-43 (366)
84 COG1208 GCD1 Nucleoside-diphos 94.5 0.1 2.3E-06 59.0 7.9 178 290-544 3-184 (358)
85 TIGR00466 kdsB 3-deoxy-D-manno 94.4 2 4.4E-05 45.8 17.0 187 291-548 2-194 (238)
86 cd02541 UGPase_prokaryotic Pro 94.3 0.068 1.5E-06 56.9 5.6 61 291-372 3-66 (267)
87 COG1211 IspD 4-diphosphocytidy 94.1 0.13 2.8E-06 55.4 7.3 65 288-371 4-68 (230)
88 COG0448 GlgC ADP-glucose pyrop 94.0 0.57 1.2E-05 53.9 12.4 201 287-549 4-210 (393)
89 PRK14500 putative bifunctional 94.0 0.048 1E-06 61.7 3.9 39 288-335 160-198 (346)
90 PRK09382 ispDF bifunctional 2- 93.7 0.057 1.2E-06 61.8 4.0 43 287-336 4-46 (378)
91 cd04183 GT2_BcE_like GT2_BcbE_ 93.4 0.054 1.2E-06 56.1 2.8 38 291-335 1-41 (231)
92 PRK13389 UTP--glucose-1-phosph 91.8 0.23 5E-06 55.0 5.3 62 290-372 10-74 (302)
93 KOG1322 GDP-mannose pyrophosph 90.6 6.5 0.00014 44.7 14.9 187 287-548 8-199 (371)
94 cd02518 GT2_SpsF SpsF is a gly 89.2 0.76 1.6E-05 48.1 6.1 60 291-372 2-62 (233)
95 PRK15460 cpsB mannose-1-phosph 89.0 0.63 1.4E-05 55.0 5.9 202 289-549 6-219 (478)
96 TIGR03584 PseF pseudaminic aci 83.3 41 0.0009 35.7 15.4 182 291-545 2-185 (222)
97 COG0836 {ManC} Mannose-1-phosp 82.3 1.9 4E-05 48.7 5.0 200 290-549 3-212 (333)
98 TIGR03808 RR_plus_rpt_1 twin-a 77.6 17 0.00036 43.1 10.8 106 747-866 115-227 (455)
99 COG4750 LicC CTP:phosphocholin 76.9 1.8 3.8E-05 45.9 2.5 60 291-372 3-65 (231)
100 COG1210 GalU UDP-glucose pyrop 74.6 4.3 9.3E-05 45.1 4.8 60 291-371 7-69 (291)
101 COG2068 Uncharacterized MobA-r 73.4 4 8.6E-05 43.3 4.1 39 288-335 5-43 (199)
102 PF14134 DUF4301: Domain of un 42.1 25 0.00053 42.1 3.7 60 382-451 235-297 (513)
103 PF05726 Pirin_C: Pirin C-term 41.4 72 0.0016 29.9 6.1 67 812-882 18-87 (104)
104 COG5608 LEA14-like dessication 34.7 1.8E+02 0.0038 30.3 7.9 71 750-831 51-140 (161)
105 PF10162 G8: G8 domain; Inter 34.5 1.8E+02 0.0039 28.4 7.8 68 731-826 17-86 (125)
106 KOG1460 GDP-mannose pyrophosph 34.1 3.2E+02 0.0069 31.5 10.4 184 289-545 4-193 (407)
107 COG1861 SpsF Spore coat polysa 31.7 68 0.0015 35.1 4.7 67 288-375 3-69 (241)
108 PRK00924 5-keto-4-deoxyuronate 31.2 1.5E+02 0.0033 33.2 7.5 80 784-863 44-130 (276)
109 PF04962 KduI: KduI/IolB famil 23.9 2.4E+02 0.0053 31.2 7.4 61 805-865 38-110 (261)
110 PLN03014 carbonic anhydrase 22.8 1.1E+02 0.0024 35.4 4.6 14 80-93 83-96 (347)
111 PRK00742 chemotaxis-specific m 20.9 1.4E+02 0.0031 33.4 5.1 38 830-867 225-262 (354)
112 KOG0734 AAA+-type ATPase conta 20.9 72 0.0016 39.0 2.7 42 300-358 330-371 (752)
113 TIGR03805 beta_helix_1 paralle 20.5 8.7E+02 0.019 27.4 11.1 109 733-849 54-180 (314)
No 1
>PLN02830 UDP-sugar pyrophosphorylase
Probab=100.00 E-value=2.2e-120 Score=1051.07 Aligned_cols=576 Identities=25% Similarity=0.326 Sum_probs=514.5
Q ss_pred chhHHhhccCCccHHHHHHHHHHcCccccccccccccchhhhhhHHHHHHHHHHhhhhccccCCCccchhhhhhhhhHHH
Q 002690 123 NYFARVLASLNLDQLFLIKCVIAAGQEHVLNLEPEYVESEARSDIKSALYALVEFIDRLDVNGRNSEAKDAVLEIEQVKD 202 (892)
Q Consensus 123 ~~~~~~~~~l~~~~~~L~~~L~~~GQeHll~~w~el~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~d~~~~e 202 (892)
++|+++++.|++++++|+++|.++||+|||++|+++. +++ ++
T Consensus 14 ~~~~~~~~~~~~~~~~l~~~L~~~gQ~HL~~~w~~l~-----------------------------------~~~---~e 55 (615)
T PLN02830 14 PSLHSNLALLSPDQRALVRRLLELGQSHLFEHWPEPG-----------------------------------VDD---DD 55 (615)
T ss_pred cccccccccCChhHHHHHHHHHHcCcHHHHhhhhccC-----------------------------------CCH---HH
Confidence 6899999999999999999999999999999999951 133 38
Q ss_pred HHHHHHHHHHHhccccCcCchhhHHHHHHHHHHccccccccccccccccccccccccc-c-CCCCCccCCChHHHHHHHH
Q 002690 203 LNKLLKTLAEIEQFYDCVGGIIGYQVEVLELLAQSKFERKTTKSQHVHESMECQFLEI-H-VPSGLDLSQNTEYAAQAAL 280 (892)
Q Consensus 203 k~~Ll~qL~~ld~~y~~~gGL~~y~~~a~~lL~~s~~~~~~~~~~~~~~~~~~p~~~~-~-vP~g~~l~~~~~~~~~~~~ 280 (892)
|++|++||..+|..|| ||+.+|+.++.+++.++.. +. .+++.+ + +|.+..++++++....+++
T Consensus 56 ~~~L~~qL~~ld~~y~--g~l~~~~~~~~~~l~~s~~--~~-----------~~~~~i~P~vp~~~~~~~~~~~~~~~~~ 120 (615)
T PLN02830 56 KRRLLEQVARLDESYP--GGLAAYVSNAKELLADSKE--GV-----------NPFEGWTPSVPEGEVLEYGSEEFVELEE 120 (615)
T ss_pred HHHHHHHHHhcccccc--chHHHHHHHHHHHHhhccc--CC-----------CchhhcccCCCccccccccchhhhHHHH
Confidence 9999999999999997 9999999999999986521 11 134443 4 5778777776666677888
Q ss_pred HhhhccCcEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcC-CcccceEEEecCCC
Q 002690 281 WGIEGLPELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYG-KQCITPVAIMTSSA 359 (892)
Q Consensus 281 ~Gle~L~kvAvVlLAGGlGTRLG~~~PKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G-~~~~IPl~IMTS~~ 359 (892)
+|+++|+|+|||+|||||||||||++||+ +|||+++ +++||||++++||+++|+||.++.+ ..+.||||||||+
T Consensus 121 ~Gl~~l~kvavllLaGGlGTRLG~~~pK~--~lpv~~~--~gkt~lql~~e~I~~lq~la~~~~~~~~~~IPl~IMTS~- 195 (615)
T PLN02830 121 AGLREAGNAAFVLVAGGLGERLGYSGIKV--ALPTETA--TGTCYLQLYIESILALQERAKKRKAKKGRKIPLVIMTSD- 195 (615)
T ss_pred HHHHHhCcEEEEEecCCcccccCCCCCCc--ceecccC--CCCcHHHHHHHHHHHHHHHHHHhcccCCCCceEEEECCc-
Confidence 99999999999999999999999999999 9999876 9999999999999999999987654 5689999999999
Q ss_pred CCchHHHHHHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccC--CCCcccccCCCcHHHHHHHhcCchHHHHHcCc
Q 002690 360 KNNHERITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMR--PFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGR 437 (892)
Q Consensus 360 ~~Th~~T~~fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dGkilL~~--~~~i~~~P~GHGdIy~aL~~sGlLd~l~~~Gi 437 (892)
+||++|++||++|+|||++++||+||+|+++||+++++|++++++ +++++|+||||||||+||+++|+||+|+++|+
T Consensus 196 -~T~~~T~~~~~~n~~FGl~~~~v~~F~Q~~~P~~~~~~g~~~l~~~d~~~i~~~P~GhGdi~~aL~~sGlLd~l~~~G~ 274 (615)
T PLN02830 196 -DTHARTLKLLERNDYFGMDPDQVTLLKQEKVACLMDNDARLALDPNDPYKIQTKPHGHGDVHALLYSSGLLDKWLSAGK 274 (615)
T ss_pred -chhHHHHHHHHHCCccCCCccceEEEEcCcceeEecCCCcccccCCCCCccccCCCCccHHHHHHHHCCCHHHHHHcCC
Confidence 799999999999999999999999999999999998889999987 88999999999999999999999999999999
Q ss_pred eEEEEEeCCCCcccc-ChhHHHHHHhhhhcCCceeEEEeeecCCCCcCceEEEEeecCCCccccceEEEEecccCccC--
Q 002690 438 KGATVRQVSNVVAAT-DLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFG-- 514 (892)
Q Consensus 438 kyi~V~qVDN~La~v-DP~il~flG~~~~~~~d~~~ksvvRK~~~~EkVGvL~~~~~~dGk~~~~~~vVEYsEl~~~~-- 514 (892)
||+|||||||+|+++ || +|+|+|+.++++|++++| +| .+.|++|++|+.++.||++ +++||||+|++++.
T Consensus 275 ~yi~v~~vDN~L~~~Adp---~flG~~~~~~~d~~~kvv-~K-~~~E~vGvi~~~~~~dG~~--l~~vVEYse~~~ll~~ 347 (615)
T PLN02830 275 KWVVFFQDTNGLVFKAIP---AALGVSATKGFDMNSLAV-PR-KAKEAIGAIAKLTHKDGRE--MVINVEYNQLDPLLRA 347 (615)
T ss_pred EEEEEEeccchhhhcccH---HHhHHHHhcCCceEEEEE-EC-CCCcccceEEEEecCCCCe--eeEEEeecccCHHHHh
Confidence 999999999999999 88 688999999999999975 45 5789999999877789984 56999999999883
Q ss_pred --CCCCCCCCCCccccCccceeeeEEeHHHHHhhhcccccCCccccccccCCCceeecCCCCccccCcccccccchhhHh
Q 002690 515 --ITRGPFSSNGLQADFPANTNILYVDLASAELVGSSENERSLPGMVLNTKKPIVYMDNFGDTHSVPGGRLECTMQNIAD 592 (892)
Q Consensus 515 --~~~~~~~dg~l~S~F~aNInn~~fsL~fL~~vl~~~~~~~Lp~hIanpKKkIpy~D~~g~~~~~~~~rLE~~Mqdi~d 592 (892)
.++++..+++++|.|||||||+|++|++|++++++ +.+.+|++ +||| |+|.++ +.++.++|||||||||++
T Consensus 348 a~~p~g~l~~~~~~s~FPgNtN~L~v~L~a~~~~l~~-~~~~lp~i-vNpK----~~d~~~-~v~q~~trle~~mq~f~~ 420 (615)
T PLN02830 348 TGHPDGDVNDETGYSPFPGNINQLILKLGPYVKELAK-TGGVIEEF-VNPK----YKDATK-TAFKSPTRLECMMQDYPK 420 (615)
T ss_pred ccCCCcccccccccccCCCCceeeEeeHHHHHHHHHh-CCCcccee-ccCc----ccCCCC-ceeecchHHHHHHHHHhh
Confidence 34566667888999999999999999999999985 88899985 5999 999774 588999999999999999
Q ss_pred hhcccccccccccccccccceeeeeeccCCCchhhhhccccccccccccccccccCCCCCCCCCCccccccccCCCCCCc
Q 002690 593 NFLNTYSSRCYKGVEDDLDTFMVYNERRRVTSSAKKKRKRADMSLHQCLNVRNCCNGTAGKSYDSNTFTRCLHQRTPDGS 672 (892)
Q Consensus 593 ~F~~~~~~~~~kv~f~~~~Rf~~fsPvKn~~~sa~k~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~s~~~~~~~~tp~~~ 672 (892)
.|.. ..+|||++++||.+|+||||++++|++|+++ |+|++||+ ++
T Consensus 421 ~~~~-----~~~vg~~v~~~~~~f~PVKn~~s~a~~k~~~-------------------~~~~~~~~-----------s~ 465 (615)
T PLN02830 421 TLPP-----SAKVGFTVFDNWLAYSPVKNSPADGAAKVPE-------------------GNPTHSAT-----------SG 465 (615)
T ss_pred hcCc-----ccccCceecCchheeccccCChHHhhhhccc-------------------CCCccCcc-----------hh
Confidence 9954 4579999999999999999999999998875 47888888 66
Q ss_pred HHHHHHHHHHHHHHcCcccCccc----cCCccccCCCCeEEEeCCCccccHHHHhccc-CC-CCCCCCcEEEEEeceEEe
Q 002690 673 FLDILRNAYDILCQCHIKLPEIE----GNDKYIDDGPPYLILLHPALGLLWEVTRQKF-KG-GSVSKGSELQIEVAEFLW 746 (892)
Q Consensus 673 ~~di~~~~~~~L~~~g~~v~~~~----~~~~~~~~gP~~~i~l~P~~~~~~~~~~~k~-~~-gsis~~S~L~veG~~~~~ 746 (892)
++|||++++.+|+..|+.+.++. .++.++..||+ |.|+|+|+++|+++++|| ++ ++|+++|+|+|+|+++||
T Consensus 466 e~d~y~~~~llL~~s~~~~~~~~~~~~~~~~~~~~~P~--I~L~p~f~~~~~~~~~k~~~~~~si~~~s~L~v~G~~~~~ 543 (615)
T PLN02830 466 EMAIYGANCLILRKAGADVEEPVEDVVFNGIEVEVGPR--IVLKPAFALTFSELKKKVAPGSVKISQRSTLVLEGADIVI 543 (615)
T ss_pred hHHHHHHHHHHHHhcCCccccCccccccCCcccCCCCe--EEECchhhhHHHHHHHHhcCCCCcccCCCeEEEEeeeEEe
Confidence 99999999999999888776543 36778888995 999999999999999999 76 489999999999999999
Q ss_pred eceEEEeeEEEEeccCCCCceecCCCccceecccccceEEEeeeEEeeCceeeecCCC--------ccccccceeeeEEE
Q 002690 747 RNVQLDGSLIIVAENVMGSTRIADNGESILQYGYRCGRCKLNNVKVLNKGIDWDCGDN--------TYWKHDVQWFEALK 818 (892)
Q Consensus 747 ~~v~ldGslvI~a~~~~g~~~~~~~g~~i~~~~~~~~~~~~~~~~V~N~G~~~~~~~~--------~~w~~~~~r~e~~~ 818 (892)
+||+|||+|+|.|+ .|+ +|+|+|+.|+|+||+|.+++. .+++..+.|.|..+
T Consensus 544 ~~v~LdG~viI~a~--~~~------------------~~~i~g~~v~N~g~~~~~~~~~~~~~~~~~irg~~~~~~e~~~ 603 (615)
T PLN02830 544 ENLSLDGALVVRAV--PGA------------------EVTVGGLRVKNKGWTWEPVDKGTSAPEEIRIRGFVIKKVETAE 603 (615)
T ss_pred cCeEEEEEEEEEcC--CCC------------------eEEecCeEEecCCcEEEecCCCCCcchhhhhcceeEeeeeeEE
Confidence 99999999999998 444 889999999999999999643 48899999999999
Q ss_pred EEEecCceeE
Q 002690 819 VILHGNAEFE 828 (892)
Q Consensus 819 i~~~g~~ef~ 828 (892)
+++.-++.|.
T Consensus 604 ~~~~~~g~~~ 613 (615)
T PLN02830 604 LVFDKPGKYT 613 (615)
T ss_pred EEecCCCcee
Confidence 9999988874
No 2
>PLN02435 probable UDP-N-acetylglucosamine pyrophosphorylase
Probab=100.00 E-value=6.4e-90 Score=779.54 Aligned_cols=438 Identities=18% Similarity=0.214 Sum_probs=364.8
Q ss_pred cHHHHHHHHHHcCccccccccccccchhhhhhHHHHHHHHHHhhhhccccCCCccchhhhhhhhhHHHHHHHHHHHHHHh
Q 002690 135 DQLFLIKCVIAAGQEHVLNLEPEYVESEARSDIKSALYALVEFIDRLDVNGRNSEAKDAVLEIEQVKDLNKLLKTLAEIE 214 (892)
Q Consensus 135 ~~~~L~~~L~~~GQeHll~~w~el~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~d~~~~ek~~Ll~qL~~ld 214 (892)
+..+|+++|.++||+|||++|+++ +++ +|++|++||..+|
T Consensus 21 ~~~~l~~~l~~~gQ~HLl~~w~~l-------------------------------------s~~---e~~~L~~qL~~iD 60 (493)
T PLN02435 21 PPQALLERLKDYGQEDAFALWDEL-------------------------------------SPE---ERDLLVRDIESLD 60 (493)
T ss_pred cHHHHHHHHHHcChHHHHHhhhhC-------------------------------------CHH---HHHHHHHHHHhcC
Confidence 566899999999999999999995 344 7999999999999
Q ss_pred ccccCcCchhhHHHHHHHHHHccccccccccccccccccccccccc-cCCCCCccCC---ChHHHHHHHHHhhhcc--Cc
Q 002690 215 QFYDCVGGIIGYQVEVLELLAQSKFERKTTKSQHVHESMECQFLEI-HVPSGLDLSQ---NTEYAAQAALWGIEGL--PE 288 (892)
Q Consensus 215 ~~y~~~gGL~~y~~~a~~lL~~s~~~~~~~~~~~~~~~~~~p~~~~-~vP~g~~l~~---~~~~~~~~~~~Gle~L--~k 288 (892)
..| +...+++++..+ .. +.+.+ ++|.+...+. ..+....+++.|+++| +|
T Consensus 61 ~~~--------l~~~~~~~~~~~----~~------------~~~~i~P~p~~~~~~~~~~~~~~~~~~~~~Gl~~I~~gk 116 (493)
T PLN02435 61 LPR--------IDRIIRCSLRSQ----GL------------PVPAIEPVPENSVSTVEERTPEDRERWWKMGLKAISEGK 116 (493)
T ss_pred HHH--------HHHHHHHHhhcc----CC------------chhccCCCChhhccchhccChHHHHHHHHHHHHHHhcCC
Confidence 843 224445555321 11 11222 4555443333 2244566788999999 59
Q ss_pred EEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcC----CcccceEEEecCCCCCchH
Q 002690 289 LGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYG----KQCITPVAIMTSSAKNNHE 364 (892)
Q Consensus 289 vAvVlLAGGlGTRLG~~~PKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G----~~~~IPl~IMTS~~~~Th~ 364 (892)
||||+||||||||||+++||| ||||+++ ++|||||+++|||+++|+||.+++| ..+.||||||||+ .||+
T Consensus 117 vavvlLAGGqGTRLG~~~PKg--~~~Iglp--s~kslfql~~e~I~~lq~la~~~~~~~~~~~~~IPl~IMTS~--~T~~ 190 (493)
T PLN02435 117 LAVVLLSGGQGTRLGSSDPKG--CFNIGLP--SGKSLFQLQAERILCVQRLAAQASSEGPGRPVTIHWYIMTSP--FTDE 190 (493)
T ss_pred EEEEEeCCCcccccCCCCCcc--ceecCCC--CCCcHHHHHHHHHHHHHHHHHhhcccccCCCCceeEEEeCCc--chhH
Confidence 999999999999999999999 9999988 9999999999999999999987654 4588999999999 7999
Q ss_pred HHHHHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCcccccCCCcHHHHHHHhcCchHHHHHcCceEEEEEe
Q 002690 365 RITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQ 444 (892)
Q Consensus 365 ~T~~fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dGkilL~~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~~Gikyi~V~q 444 (892)
+|++||++|+|||++++||+||+|+++||++ .||+++++++++++|+|+||||||.||+++|+|++|+++|+||+||||
T Consensus 191 ~T~~ff~~~~~FGl~~~~V~fF~Q~~~P~~~-~dg~i~l~~~~~i~~~P~GnGgiy~aL~~sG~Ld~l~~~Gi~yi~v~~ 269 (493)
T PLN02435 191 ATRKFFESHKYFGLEADQVTFFQQGTLPCVS-KDGKFIMETPFKVAKAPDGNGGVYAALKSSRLLEDMASRGIKYVDCYG 269 (493)
T ss_pred HHHHHHHhCCCCCCCccceEEEecCCcceEC-CCCCcccCCCcccccCCCCCcHHHHHHHHCCcHHHHHhcCCEEEEEEe
Confidence 9999999999999999999999999999998 789999999999999999999999999999999999999999999999
Q ss_pred CCCCcccc-ChhHHHHHHhhhhcCCceeEEEeeecCCCCcCceEEEEeecCCCccccceEEEEecccCccCCCCCCCC-C
Q 002690 445 VSNVVAAT-DLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFS-S 522 (892)
Q Consensus 445 VDN~La~v-DP~il~flG~~~~~~~d~~~ksvvRK~~~~EkVGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~~~~-d 522 (892)
|||+|+++ || .|+|+++.++.+|+++ |+||+.|+|+||++|+. ..||+ ++||||+|++++. ++.+++ +
T Consensus 270 vDN~L~~~~DP---~flG~~~~~~~d~~~k-Vv~K~~~~EkvG~i~~~-~~~g~----~~vvEYsEl~~~~-~~~~~~~~ 339 (493)
T PLN02435 270 VDNALVRVADP---TFLGYFIDKGVASAAK-VVRKAYPQEKVGVFVRR-GKGGP----LTVVEYSELDQAM-ASAINQQT 339 (493)
T ss_pred cccccccccCH---HHHHHHHhcCCceEEE-eeecCCCCCceeEEEEe-cCCCC----EEEEEeccCCHHH-HhccCccc
Confidence 99999998 99 6789999999999999 59999999999999973 36888 8999999999986 444443 4
Q ss_pred CCccccCcc-ceeeeEEeHHHHHhhhcccccCCccccccccCCCceeecCCCCccccCcccccccchhhHhhhccccccc
Q 002690 523 NGLQADFPA-NTNILYVDLASAELVGSSENERSLPGMVLNTKKPIVYMDNFGDTHSVPGGRLECTMQNIADNFLNTYSSR 601 (892)
Q Consensus 523 g~l~S~F~a-NInn~~fsL~fL~~vl~~~~~~~Lp~hIanpKKkIpy~D~~g~~~~~~~~rLE~~Mqdi~d~F~~~~~~~ 601 (892)
|.+. |++ |||||||+++||+++.+. .+..+|+|+|+ |||||+|.. ++++|||.|++|+ |+.
T Consensus 340 g~L~--~~~gnI~~h~fs~~fL~~~~~~-~~~~l~~H~A~--Kkip~~~~~-----~ngiK~E~FiFDv---f~~----- 401 (493)
T PLN02435 340 GRLR--YCWSNVCLHMFTLDFLNQVANG-LEKDSIYHLAE--KKIPSIHGY-----TMGLKLEQFIFDA---FPY----- 401 (493)
T ss_pred cccc--cchhhHHHhhccHHHHHHHHHh-hhhcCCceeec--cccCccCCC-----cceEEeeeeeecc---hhh-----
Confidence 8886 998 999999999999998763 44569999999 999999943 3689999876554 543
Q ss_pred ccccccccccceeeeeeccCCCchhhhhccccccccccccccccccCCCCCCCCCCccccccccCCCCCCcHHHHHHHHH
Q 002690 602 CYKGVEDDLDTFMVYNERRRVTSSAKKKRKRADMSLHQCLNVRNCCNGTAGKSYDSNTFTRCLHQRTPDGSFLDILRNAY 681 (892)
Q Consensus 602 ~~kv~f~~~~Rf~~fsPvKn~~~sa~k~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~s~~~~~~~~tp~~~~~di~~~~~ 681 (892)
+.++++.+++|..+|+|+||+++++ .|||++++.+++++++
T Consensus 402 a~~~~~~eV~R~~EFaPlKN~~g~~---------------------------------------~Dsp~tar~~l~~~~~ 442 (493)
T PLN02435 402 APSTALFEVLREEEFAPVKNANGSN---------------------------------------FDTPESARLLVLRLHT 442 (493)
T ss_pred cCceEEEEEchhhccCcccCCCCCC---------------------------------------CCCHHHHHHHHHHHHH
Confidence 4567778899999999999986643 1378899999999999
Q ss_pred HHHHHcCcccCccc-cCCccccCCCCeEEEeC
Q 002690 682 DILCQCHIKLPEIE-GNDKYIDDGPPYLILLH 712 (892)
Q Consensus 682 ~~L~~~g~~v~~~~-~~~~~~~~gP~~~i~l~ 712 (892)
+||+++|+.+.+.. .....++..|. +.+.
T Consensus 443 ~wl~~aG~~~~~~~~~~~~~vEisP~--~sY~ 472 (493)
T PLN02435 443 RWVVAAGGFLTHSVPLYATGVEVSPL--CSYA 472 (493)
T ss_pred HHHHHcCCEecCCccccCCcEEeCCc--eeeC
Confidence 99999998774222 11224555663 5544
No 3
>cd06424 UGGPase UGGPase catalyzes the synthesis of UDP-Glucose/UDP-Galactose. UGGPase: UDP-Galactose/Glucose Pyrophosphorylase catalyzes the reversible production of UDP-Glucose/UDP-Galactose and pyrophosphate (PPi) from Glucose-1-phosphate/Galactose-1-phosphate and UTP. Its dual substrate specificity distinguishes it from the single substrate enzyme UDP-glucose pyrophosphorylase. It may play a key role in the galactose metabolism in raffinose oligosaccharide (RFO) metabolizing plants. RFO raffinose is a major photoassimilate and is a galactosylderivative of sucrose (Suc) containing a galactose (Gal) moiety. Upon arriving at the sink tissue, the Gal moieties of the RFOs are initially removed by alpha-galactosidase and then are phosphorylated to Gal-1-P. Gal-1-P is converted to UDP-Gal. The UDP-Gal is further metabolized to UDP-Glc via an epimerase reaction. The UDP-Glc can be directly utilized in cell wall metabolism or in Suc synthesis. However, for the Suc synthesis UDP-Glc must be f
Probab=100.00 E-value=1.3e-82 Score=688.28 Aligned_cols=307 Identities=23% Similarity=0.284 Sum_probs=278.1
Q ss_pred EEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHHH
Q 002690 289 LGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITS 368 (892)
Q Consensus 289 vAvVlLAGGlGTRLG~~~PKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~~~Th~~T~~ 368 (892)
+|||+||||||||||+++||| +|||+++ +++||||+|++||+++|++|.+.++ +.||||||||+ +||++|++
T Consensus 1 ~a~vllaGG~GTRLG~~~pKg--~~~v~~~--~~~s~f~l~~~~i~~l~~~~~~~~~--~~IPl~IMTS~--~Th~~T~~ 72 (315)
T cd06424 1 AVFVLVAGGLGERLGYSGIKI--GLPVELT--TNTTYLQYYLNYIRAFQEASKKGEK--MEIPFVIMTSD--DTHSKTLK 72 (315)
T ss_pred CEEEEecCCCccccCCCCCce--eeeccCC--CCCcHHHHHHHHHHHHHHHhhccCC--CceeEEEECCC--chhHHHHH
Confidence 589999999999999999999 9999977 9999999999999999999876444 89999999999 79999999
Q ss_pred HHHHhCCCCCCCCceEEEecCCeeeEecCCCcc--cccCCCCcccccCCCcHHHHHHHhcCchHHHHHcCceEEEEEeCC
Q 002690 369 LCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQW--LVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVS 446 (892)
Q Consensus 369 fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dGki--lL~~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~~Gikyi~V~qVD 446 (892)
||++|+|||++++||+||+|+++||+++.+|++ .++++++++|+|+||||||+||+++|+||+|+++|+||++|+|||
T Consensus 73 ~fe~n~yFGl~~~~V~fF~Q~~~P~l~~~~g~l~~~l~~~~~i~~~P~GhGdiy~aL~~sGlLd~l~~~Gikyi~v~~vd 152 (315)
T cd06424 73 LLEENNYFGLEKDQVHILKQEKVFCLIDNDAHLALDPDNTYSILTKPHGHGDVHTLLYNSGLLKKWIEAGYKWLVFFQDT 152 (315)
T ss_pred HHHHCCccCCCcccEEEEecCceEEEecCCCCcccccCCCCccccCCCCchHHHHHHHHCCcHHHHHHCCCEEEEEEecc
Confidence 999999999999999999999999998789999 578999999999999999999999999999999999999999999
Q ss_pred CCcccc-ChhHHHHHHhhhhcCCceeEEEeeecCCCCcCceEEEEeecCCCccccceEEEEecccCccCC----CCCCCC
Q 002690 447 NVVAAT-DLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGI----TRGPFS 521 (892)
Q Consensus 447 N~La~v-DP~il~flG~~~~~~~d~~~ksvvRK~~~~EkVGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~----~~~~~~ 521 (892)
|+|+++ || +|+|+++.+++++++++|.| .|.|+||++|+.++.||+ ++++|||||||+++.. .+++.+
T Consensus 153 N~L~~~adP---~fiG~~~~~~~d~~~k~v~~--~~~E~vG~~~~~~~~~g~--~~v~nvEYsel~~~~~~~~~~~g~~~ 225 (315)
T cd06424 153 NALAFKAIP---AVLGVSATKSLDMNSLTVPR--KPKEAIGALCKLTKNNGK--SMTINVEYNQLDPLLRASGKDDGDVD 225 (315)
T ss_pred hhhhhccCh---hhEEEEecCCCceEeEEEeC--CCCCceeeEEEEecCCCc--eEEEEEEeecCCHHHHhcCCCCCCcc
Confidence 999999 99 78999999999999998654 457999999986667888 3456799999998641 223344
Q ss_pred CCCccccCccceeeeEEeHHHHHhhhcccccCCccccccccCCCceeecCCCCccccCcccccccchhhHhhhccccccc
Q 002690 522 SNGLQADFPANTNILYVDLASAELVGSSENERSLPGMVLNTKKPIVYMDNFGDTHSVPGGRLECTMQNIADNFLNTYSSR 601 (892)
Q Consensus 522 dg~l~S~F~aNInn~~fsL~fL~~vl~~~~~~~Lp~hIanpKKkIpy~D~~g~~~~~~~~rLE~~Mqdi~d~F~~~~~~~ 601 (892)
+.+++|.||||||+|+|+|++|.+++++ +.+.+|+|+ ||| |.|.++ +.+++|+|||||||||+++|+.
T Consensus 226 ~~~~~s~f~gNi~~~~f~l~~~~~~l~~-~~~~~~~~~-n~k----y~d~~~-~~~~~p~rlE~~m~D~~~~f~~----- 293 (315)
T cd06424 226 DKTGFSPFPGNINQLVFSLGPYMDELEK-TKGAIPEFI-NPK----YKDATK-TAFKSPTRLECMMQDIPLLFEE----- 293 (315)
T ss_pred cccccccCCCeeeeEEEeHHHHHHHHhh-ccccCeeee-cCC----cccCCC-CeecCchHHHHHHHHHHHhhcc-----
Confidence 4567899999999999999999999986 678899988 877 999873 4789999999999999999975
Q ss_pred ccccccccccceeeeeeccCC
Q 002690 602 CYKGVEDDLDTFMVYNERRRV 622 (892)
Q Consensus 602 ~~kv~f~~~~Rf~~fsPvKn~ 622 (892)
..+||+++++||.||||+||.
T Consensus 294 ~~~~~~~~~~r~~~fsP~KN~ 314 (315)
T cd06424 294 DYRVGFTVLDRWLCFSPVKNN 314 (315)
T ss_pred cceeEEEEEchhhcccccCCC
Confidence 679999999999999999996
No 4
>PTZ00339 UDP-N-acetylglucosamine pyrophosphorylase; Provisional
Probab=100.00 E-value=1.2e-81 Score=713.15 Aligned_cols=449 Identities=17% Similarity=0.156 Sum_probs=358.5
Q ss_pred HHHHHHcCccccccccccccchhhhhhHHHHHHHHHHhhhhccccCCCccchhhhhhhhhHHHHHHHHHHH-HHHhcccc
Q 002690 140 IKCVIAAGQEHVLNLEPEYVESEARSDIKSALYALVEFIDRLDVNGRNSEAKDAVLEIEQVKDLNKLLKTL-AEIEQFYD 218 (892)
Q Consensus 140 ~~~L~~~GQeHll~~w~el~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~d~~~~ek~~Ll~qL-~~ld~~y~ 218 (892)
+++|.++||+|||++|++| +++ +|..|++|| +.+....
T Consensus 2 ~~~l~~~gQ~hl~~~~~~l-------------------------------------~~~---e~~~l~~ql~~~~~~~d- 40 (482)
T PTZ00339 2 LKVLTGDGQDHLREALKRR-------------------------------------SEG---EFTPLATQILSSLTNVD- 40 (482)
T ss_pred hhhhhhcCHHHHHHHHHhC-------------------------------------CHH---HHHHHHHHHHHHhhccC-
Confidence 5689999999999999995 334 899999999 6443321
Q ss_pred CcCchhhHHHHHHHHHHccccccccccccccccccccccccc-cCCCCCcc--CCChHHHHHHHHHhhhccC--cEEEEE
Q 002690 219 CVGGIIGYQVEVLELLAQSKFERKTTKSQHVHESMECQFLEI-HVPSGLDL--SQNTEYAAQAALWGIEGLP--ELGEIY 293 (892)
Q Consensus 219 ~~gGL~~y~~~a~~lL~~s~~~~~~~~~~~~~~~~~~p~~~~-~vP~g~~l--~~~~~~~~~~~~~Gle~L~--kvAvVl 293 (892)
+.-+...++.+......+....+..+ ++++ ..+ ++|..... ...++...+++++|+++|+ |+|+|+
T Consensus 41 -~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~------~~~~p~~~~~~~~~~~~~~~~~~~~~~Gl~~i~~gkvavVi 111 (482)
T PTZ00339 41 -FKHRNAVLEPKLEEYNAEAPVGIDID--SIHN------CNIEPPNNNTFIDIYEKEKERKELKESGLEIIKKGEVAVLI 111 (482)
T ss_pred -HHHHHHHHHHHhhhhhcccccccccc--cccc------cccCCCCcccccccccCHHHHHHHHHhHHHHHhcCCeEEEE
Confidence 14455666665543332210000000 0000 112 44443222 2234566788899999998 699999
Q ss_pred ecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcC--CcccceEEEecCCCCCchHHHHHHHH
Q 002690 294 PLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYG--KQCITPVAIMTSSAKNNHERITSLCE 371 (892)
Q Consensus 294 LAGGlGTRLG~~~PKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G--~~~~IPl~IMTS~~~~Th~~T~~fle 371 (892)
||||||||||++.||+ |+||+++ +++||||++++||++++.++.+++| ..+.||||||||+ .||+.|++||+
T Consensus 112 LAGG~GTRLg~~~PK~--ll~I~~~--~gksL~q~~~erI~~l~~~~~~~~~~~~~~~Ip~~IMTS~--~t~~~t~~~f~ 185 (482)
T PTZ00339 112 LAGGLGTRLGSDKPKG--LLECTPV--KKKTLFQFHCEKVRRLEEMAVAVSGGGDDPTIYILVLTSS--FNHDQTRQFLE 185 (482)
T ss_pred ECCCCcCcCCCCCCCe--EeeecCC--CCccHHHHHHHHHHHHhhhhhcccccccCCCCCEEEEeCc--chHHHHHHHHH
Confidence 9999999999999999 9999866 9999999999999999998876665 3478999999999 79999999999
Q ss_pred HhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCcccccCCCcHHHHHHHhcCchHHHHHcCceEEEEEeCCCCccc
Q 002690 372 RLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNVVAA 451 (892)
Q Consensus 372 ~n~yFGl~~~qV~~F~Q~~vP~l~~~dGkilL~~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~~Gikyi~V~qVDN~La~ 451 (892)
+|+|||++++||+||+|+++||++.++|+++++++++++|+|+||||||.||+++|+|++|+++|+||+||+||||+|++
T Consensus 186 ~~~~FGl~~~~V~~F~Q~~~P~i~~~~g~ill~~~~~i~~~P~GnGgiy~aL~~sG~Ld~l~~~Gi~yi~v~~vDN~L~k 265 (482)
T PTZ00339 186 ENNFFGLDKEQVIFFKQSSLPCYDENTGRFIMSSQGSLCTAPGGNGDVFKALAKCSELMDIVRKGIKYVQVISIDNILAK 265 (482)
T ss_pred hccccCCCcccEEEEecCCcceEecCCCCcccCCCCceeeCCCCCcHHHHHHHHCCcHHHHHHcCCEEEEEEecCccccc
Confidence 99999999999999999999999977899999999999999999999999999999999999999999999999999999
Q ss_pred c-ChhHHHHHHhhhhcCC-ceeEEEeeecCCCCcCceEEEEeecCCCccccceEEEEecccCccCCCCCCCC-CCCcccc
Q 002690 452 T-DLTLLALAGIGLHHGK-KLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFS-SNGLQAD 528 (892)
Q Consensus 452 v-DP~il~flG~~~~~~~-d~~~ksvvRK~~~~EkVGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~~~~-dg~l~S~ 528 (892)
+ || .|||+++.+++ ++..++ + |+.++|+||++|+ .||+ +++|||+|++++. ++.+.. +|.+ .
T Consensus 266 ~~DP---~flG~~~~~~~~~~~~kv-v-k~~~~EkvG~~~~---~~g~----~~vvEYsEi~~~~-~~~~~~~~g~l--~ 330 (482)
T PTZ00339 266 VLDP---EFIGLASSFPAHDVLNKC-V-KREDDESVGVFCL---KDYE----WQVVEYTEINERI-LNNDELLTGEL--A 330 (482)
T ss_pred ccCH---HHhHHHHHCCchhheeee-e-cCCCCCceeEEEE---eCCc----ccEEEEeccChhh-hhcccccCCee--c
Confidence 8 99 67899999999 888885 5 6778999999998 6888 8999999999986 444333 3554 5
Q ss_pred Ccc-ceeeeEEeHHHHHhhhcccccCCccccccccCCCceeecCCCCccccCcccccccchhhHhhhccccccccccccc
Q 002690 529 FPA-NTNILYVDLASAELVGSSENERSLPGMVLNTKKPIVYMDNFGDTHSVPGGRLECTMQNIADNFLNTYSSRCYKGVE 607 (892)
Q Consensus 529 F~a-NInn~~fsL~fL~~vl~~~~~~~Lp~hIanpKKkIpy~D~~g~~~~~~~~rLE~~Mqdi~d~F~~~~~~~~~kv~f 607 (892)
|.+ |||||||+++||+++++......||+|+|. |||||+|... ..++++|||.| |||+|+. +.++++
T Consensus 331 f~~gnI~~h~fsl~fl~~~~~~~~~~~l~~H~a~--Kkip~~~~~~--~~png~K~E~F---iFDvf~~-----~~~~~~ 398 (482)
T PTZ00339 331 FNYGNICSHIFSLDFLKKVAANRLYESTPYHAAR--KKIPYINGPT--DKTMGIKLEAF---IFDIFRY-----AKNVLI 398 (482)
T ss_pred ccccceEEEEEEHHHHHHHhhhhhhhcCCceeec--cccCeeCCCC--CCcceeeehhh---hhhHHHh-----ccccce
Confidence 776 999999999999998752234569999999 9999999432 44679999966 5566654 457778
Q ss_pred ccccceeeeeeccCCCchhhhhccccccccccccccccccCCCCCCCCCCccccccccCCCCCCcHHHHHHHHHHHHHHc
Q 002690 608 DDLDTFMVYNERRRVTSSAKKKRKRADMSLHQCLNVRNCCNGTAGKSYDSNTFTRCLHQRTPDGSFLDILRNAYDILCQC 687 (892)
Q Consensus 608 ~~~~Rf~~fsPvKn~~~sa~k~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~s~~~~~~~~tp~~~~~di~~~~~~~L~~~ 687 (892)
.+++|..+|+|+||+++++ .|||++++.++++++++||+++
T Consensus 399 ~ev~R~~eFsPlKNa~g~~---------------------------------------~d~p~tar~~l~~~~~~wl~~a 439 (482)
T PTZ00339 399 LEVDREDEFAPIKNADGAA---------------------------------------ADTILNAQKLLLSLHTRWLEAA 439 (482)
T ss_pred eeechhhccccccCCCCCC---------------------------------------CCCHHHHHHHHHHHHHHHHHHC
Confidence 8899999999999986643 1378899999999999999999
Q ss_pred CcccCcc-ccCCccccCCCCeEEEeC
Q 002690 688 HIKLPEI-EGNDKYIDDGPPYLILLH 712 (892)
Q Consensus 688 g~~v~~~-~~~~~~~~~gP~~~i~l~ 712 (892)
|+.+.+. ...+..++..|. |.+.
T Consensus 440 g~~~~~~~~~~~~~~Eisp~--~sy~ 463 (482)
T PTZ00339 440 LETVAGNPREGLNLCEISPL--VSYG 463 (482)
T ss_pred CCeeeccccCCCceEEecCc--ceeC
Confidence 9976432 112334566773 5544
No 5
>KOG2388 consensus UDP-N-acetylglucosamine pyrophosphorylase [Cell wall/membrane/envelope biogenesis]
Probab=100.00 E-value=4.9e-77 Score=660.98 Aligned_cols=433 Identities=19% Similarity=0.220 Sum_probs=362.2
Q ss_pred cHHHHHHHHHHcCccccccccccccchhhhhhHHHHHHHHHHhhhhccccCCCccchhhhhhhhhHHHHHHHHHHHHHHh
Q 002690 135 DQLFLIKCVIAAGQEHVLNLEPEYVESEARSDIKSALYALVEFIDRLDVNGRNSEAKDAVLEIEQVKDLNKLLKTLAEIE 214 (892)
Q Consensus 135 ~~~~L~~~L~~~GQeHll~~w~el~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~d~~~~ek~~Ll~qL~~ld 214 (892)
++.++.+.|.++||+|||.+|++| +++ ++..|++||+.++
T Consensus 2 ~~~~~~~~l~~~Gq~~l~~~w~eL-------------------------------------~~~---~~~~l~~~ie~l~ 41 (477)
T KOG2388|consen 2 DRTKLHLILLEAGQSHLFTQWPEL-------------------------------------SEA---DKESLLDQIEVLN 41 (477)
T ss_pred chhHHHHHHHHcChHhHhhhchhc-------------------------------------CHH---HHHHHHHHHHhhc
Confidence 567889999999999999999996 334 6779999999999
Q ss_pred ccccCcCchhhHHHHHHHHHHccccccccccccccccccccccccccCCCCCcc--CC-ChHHHHHHHHHhhhccC--cE
Q 002690 215 QFYDCVGGIIGYQVEVLELLAQSKFERKTTKSQHVHESMECQFLEIHVPSGLDL--SQ-NTEYAAQAALWGIEGLP--EL 289 (892)
Q Consensus 215 ~~y~~~gGL~~y~~~a~~lL~~s~~~~~~~~~~~~~~~~~~p~~~~~vP~g~~l--~~-~~~~~~~~~~~Gle~L~--kv 289 (892)
.+++ +|+.. ..|.+.. +. ... ..++|+.... .. .....++++..|++.|+ ++
T Consensus 42 l~~~--~~~~~--~~a~~~~--~~---~~~--------------~~p~p~~~~~~~~~~~~~d~d~~~~~G~~~i~~~~~ 98 (477)
T KOG2388|consen 42 LSRI--HGLQR--ISANEDS--KP---VGE--------------IRPVPESKSWPLKERGLDDVDQWWKEGLRLIAEGKV 98 (477)
T ss_pred cccc--chhhh--cChhhcc--Cc---ccc--------------cCCCCccccceecccCchhhhHHHhcChhhhhcCcc
Confidence 9775 66554 3443333 11 110 1133332211 11 22233447788999997 99
Q ss_pred EEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHHHH
Q 002690 290 GEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSL 369 (892)
Q Consensus 290 AvVlLAGGlGTRLG~~~PKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~~~Th~~T~~f 369 (892)
|++++|||||||||+++||+ |+|++++ +++||||+++|+|+++|++|.+..+.++.||||||||. .|++.|++|
T Consensus 99 a~~llaGgqgtRLg~~~pkg--~~~~G~~--~~~slf~~qae~il~lq~~a~~~~~~~~~I~w~ImtS~--~T~e~T~~~ 172 (477)
T KOG2388|consen 99 AVVLLAGGQGTRLGSSGPKG--CYPIGLP--SGKSLFQIQAERILKLQELASMAVSDGVDIPWYIMTSA--FTHEATLEY 172 (477)
T ss_pred eEEEeccCceeeeccCCCcc--eeecCCc--cccchhhhhHHHHHHHHHHHhhhhccCCceEEEEecCC--CccHHhHhH
Confidence 99999999999999999999 9999999 89999999999999999999888877799999999999 799999999
Q ss_pred HHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCcccccCCCcHHHHHHHhcCchHHHHHcCceEEEEEeCCCCc
Q 002690 370 CERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNVV 449 (892)
Q Consensus 370 le~n~yFGl~~~qV~~F~Q~~vP~l~~~dGkilL~~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~~Gikyi~V~qVDN~L 449 (892)
|+.|+||||+++||+||+|+++||++ .+|+++|+.+.+++++|+|||++|+|+.++ |++|.++|++|+|||||||+|
T Consensus 173 f~~~~~FGl~~~qv~~f~Q~~l~c~~-~~gk~~le~k~~~a~ap~gngg~y~ai~~~--l~dm~~rgi~~~hiy~VdnvL 249 (477)
T KOG2388|consen 173 FESHKYFGLKPEQVTFFQQGKLPCLD-LDGKFILEQKNSLAAAPDGNGGLYRAIKDQ--LEDMAARGIFYDHIYCVDNVL 249 (477)
T ss_pred HhhcCCCCCChhHeeeeecccccccc-cCCceeccCccchhcCCCCCcHHHHHHHhh--hhHHHhhcccEEEEEEeccee
Confidence 99999999999999999999999999 678899999999999999999999999999 999999999999999999999
Q ss_pred ccc-ChhHHHHHHhhhhcCCceeEEEeeecCCCCcCceEEEEeecCC-CccccceEEEEecccCccCCCCCCCCC-CCcc
Q 002690 450 AAT-DLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLD-GKWAYGLSCIEYTEFDKFGITRGPFSS-NGLQ 526 (892)
Q Consensus 450 a~v-DP~il~flG~~~~~~~d~~~ksvvRK~~~~EkVGvL~~~~~~d-Gk~~~~~~vVEYsEl~~~~~~~~~~~d-g~l~ 526 (892)
+++ || +|||+++.++++++.++ |+|.++.|.||++|. .+ |. ++||||||++++. +.....| |.+
T Consensus 250 ~k~aDP---~fiG~~it~~~d~~~k~-V~k~~p~E~vG~~~~---~~~G~----~~vvEYsEi~~~~-a~~~~~d~g~l- 316 (477)
T KOG2388|consen 250 LKVADP---VFIGFSITKEADVAAKV-VPKINPGEVVGIVAL---KGQGT----PLVVEYSELDAEL-AKAKAPDGGRL- 316 (477)
T ss_pred eEeccc---ceeeEEeechhhHhhhh-ccccCCCCceEEEEe---cCCCc----eeEEEecccCHHH-HhhcccccCcc-
Confidence 998 99 79999999999999996 888999999999998 45 87 9999999999997 6677777 554
Q ss_pred ccCccceeeeEEeHHHHHhhhcccccCCccccccccCCCceeecCCCCcc---ccCcccccccchhhHhhhccccccccc
Q 002690 527 ADFPANTNILYVDLASAELVGSSENERSLPGMVLNTKKPIVYMDNFGDTH---SVPGGRLECTMQNIADNFLNTYSSRCY 603 (892)
Q Consensus 527 S~F~aNInn~~fsL~fL~~vl~~~~~~~Lp~hIanpKKkIpy~D~~g~~~---~~~~~rLE~~Mqdi~d~F~~~~~~~~~ 603 (892)
..+++|||||||+++||+++... ....+|+|+|. |||||+|.+|... -+.++++|.| +||+|+. ..
T Consensus 317 ~~~agnI~nh~ft~dFLkk~~~~-~~~~lp~H~a~--kKip~~~~~g~~~kP~kpnGik~E~f---ifdvf~~-----~k 385 (477)
T KOG2388|consen 317 LFNAGNICNHFFTLDFLKKVTRA-SVPLLPYHKAE--KKIPYVDSTGKLVKPTKPNGIKLEQF---IFDVFPS-----AK 385 (477)
T ss_pred ccCCccHHHHHHhhHHHHHhhhc-ccccchhhhhh--ccccccccCCcccCCCCCCceeEEee---eeeeccc-----cc
Confidence 34455999999999999999884 67779999999 9999999876543 3457999966 5666754 46
Q ss_pred ccccccccceeeeeeccCCCchhhhhccccccccccccccccccCCCCCCCCCCccccccccCCCCCCcHHHHHHHHHHH
Q 002690 604 KGVEDDLDTFMVYNERRRVTSSAKKKRKRADMSLHQCLNVRNCCNGTAGKSYDSNTFTRCLHQRTPDGSFLDILRNAYDI 683 (892)
Q Consensus 604 kv~f~~~~Rf~~fsPvKn~~~sa~k~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~s~~~~~~~~tp~~~~~di~~~~~~~ 683 (892)
+++...++|..+|+|+||...+. .|+|+|++.++++.+.+|
T Consensus 386 ~f~~meV~Re~efSPlKng~~~~---------------------------------------~D~p~T~~~~~l~~h~~w 426 (477)
T KOG2388|consen 386 KFGLMEVPREEEFSPLKNGGKSS---------------------------------------TDNPSTARIALLRLHIRW 426 (477)
T ss_pred ceeEEecchhhhcCccccCCCCC---------------------------------------CCChhHHHHHHHHhhhhe
Confidence 78888899999999999974443 236779999999999999
Q ss_pred HHHcCcccCccccCCccccCCC
Q 002690 684 LCQCHIKLPEIEGNDKYIDDGP 705 (892)
Q Consensus 684 L~~~g~~v~~~~~~~~~~~~gP 705 (892)
+..+|+.+-+. ...++++|
T Consensus 427 i~~~g~~f~~~---~~~~evs~ 445 (477)
T KOG2388|consen 427 IEKAGGIFSDA---EAVVEVSP 445 (477)
T ss_pred hhccCcEEecC---cceEEecc
Confidence 99999877543 12344566
No 6
>PLN02474 UTP--glucose-1-phosphate uridylyltransferase
Probab=100.00 E-value=6.8e-75 Score=654.04 Aligned_cols=379 Identities=19% Similarity=0.194 Sum_probs=323.9
Q ss_pred hhhccCcEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCC
Q 002690 282 GIEGLPELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKN 361 (892)
Q Consensus 282 Gle~L~kvAvVlLAGGlGTRLG~~~PKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~~~ 361 (892)
..++|+|+|||+|||||||||||++||| +|||. +++||||++++||++++ +.|| +.||||||||+ +
T Consensus 73 ~~~~L~k~avlkLnGGlGTrmG~~~PKs--~i~v~----~~~sfldl~~~qi~~l~----~~~g--~~vPl~iMtS~--~ 138 (469)
T PLN02474 73 TKKLLDKLVVLKLNGGLGTTMGCTGPKS--VIEVR----NGLTFLDLIVIQIENLN----KKYG--CNVPLLLMNSF--N 138 (469)
T ss_pred HHHHHhcEEEEEecCCcccccCCCCCce--eEEcC----CCCcHHHHHHHHHHHHH----HHcC--CCceEEEECCC--c
Confidence 3457899999999999999999999999 99984 99999999999999998 5678 89999999999 7
Q ss_pred chHHHHHHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCC---CcccccCCCcHHHHHHHhcCchHHHHHcCce
Q 002690 362 NHERITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPF---APVCKPGGHGAIWKLAHDKGIFKWFHDNGRK 438 (892)
Q Consensus 362 Th~~T~~fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dGkilL~~~~---~i~~~P~GHGdIy~aL~~sGlLd~l~~~Gik 438 (892)
||++|++||++|+||+ .+|++|+|+++||++ .+|+++++.+. +.+|+|+||||+|.+|++||+||+|+++|+|
T Consensus 139 T~~~T~~~l~k~~~~~---~~i~~F~Q~~~P~l~-~~~~~p~~~~~~~~~~~~~P~GhGd~y~aL~~sG~Ld~l~~~G~e 214 (469)
T PLN02474 139 THDDTQKIVEKYTNSN---IEIHTFNQSQYPRVV-ADDFVPWPSKGKTDKDGWYPPGHGDVFPSLMNSGKLDALLSQGKE 214 (469)
T ss_pred hhHHHHHHHHHcCCCc---cceEEEecCceeeEe-cCCCCcccccCCCCcceeeeCCCchHHHHHHhCChHHHHHhcCCE
Confidence 9999999999999984 589999999999999 67888887655 5559999999999999999999999999999
Q ss_pred EEEEEeCCCCccccChhHHHHHHhhhhcCCceeEEEeeecCCCCcCceEEEEeecCCCccccceEEEEecccCccCCCCC
Q 002690 439 GATVRQVSNVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRG 518 (892)
Q Consensus 439 yi~V~qVDN~La~vDP~il~flG~~~~~~~d~~~ksvvRK~~~~EkVGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~ 518 (892)
|+||+||||+++.+|| .|+||++.++++|.+++ ++|+.+++++|+||. .||+ +++|||+|+|++.. +.
T Consensus 215 yifv~nvDNLga~vDp---~~lg~~~~~~~e~~~ev-~~Kt~~d~kgG~l~~---~dgk----~~lvEysqvp~e~~-~~ 282 (469)
T PLN02474 215 YVFIANSDNLGAIVDL---KILNHLIQNKNEYCMEV-TPKTLADVKGGTLIS---YEGK----VQLLEIAQVPDEHV-NE 282 (469)
T ss_pred EEEEEecCccccccCH---HHHHHHHhcCCceEEEE-eecCCCCCCccEEEE---ECCE----EEEEEEecCCHHHH-Hh
Confidence 9999999997777799 56799999999999996 888999999999997 8999 99999999999973 22
Q ss_pred CCCCCCccccCcc-ceeeeEEeHHHHHhhhcccccCCcccc-ccccCCCceeecCCCCccccCcccccccchhhHhhhcc
Q 002690 519 PFSSNGLQADFPA-NTNILYVDLASAELVGSSENERSLPGM-VLNTKKPIVYMDNFGDTHSVPGGRLECTMQNIADNFLN 596 (892)
Q Consensus 519 ~~~dg~l~S~F~a-NInn~~fsL~fL~~vl~~~~~~~Lp~h-IanpKKkIpy~D~~g~~~~~~~~rLE~~Mqdi~d~F~~ 596 (892)
.++.+ .|++ |||||||+|+||+++++. +.||+| |.||| .+| | .+.+|||++|+|++..|++
T Consensus 283 --f~~~~--kf~~fNtnn~w~~L~~l~~~~~~---~~l~~~~I~n~k----~~~--g----~kv~q~Et~ig~ai~~f~~ 345 (469)
T PLN02474 283 --FKSIE--KFKIFNTNNLWVNLKAIKRLVEA---DALKMEIIPNPK----EVD--G----VKVLQLETAAGAAIRFFDN 345 (469)
T ss_pred --hcccc--cceeeeeeeEEEEHHHHHHHhhc---CCCCceeecCCC----CCC--C----eeEEEeHHHHHHHHHhCCC
Confidence 22433 5998 999999999999999863 457765 45666 444 3 3579999999999999965
Q ss_pred cccccccccccccccceeeeeeccCCCchhhhhccccccccccccccccccCCCCCCCCCCccccccccCCCCCCcHHHH
Q 002690 597 TYSSRCYKGVEDDLDTFMVYNERRRVTSSAKKKRKRADMSLHQCLNVRNCCNGTAGKSYDSNTFTRCLHQRTPDGSFLDI 676 (892)
Q Consensus 597 ~~~~~~~kv~f~~~~Rf~~fsPvKn~~~sa~k~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~s~~~~~~~~tp~~~~~di 676 (892)
+. ..+++|.- |+|+||+. ++...+.|+
T Consensus 346 -----~~---~v~VpR~r-F~PVK~~~--------------------------------------------dll~~rsdl 372 (469)
T PLN02474 346 -----AI---GINVPRSR-FLPVKATS--------------------------------------------DLLLVQSDL 372 (469)
T ss_pred -----ce---EEEEchhh-ccCCCCCC--------------------------------------------CHHHHHHHH
Confidence 11 23566664 88999972 244668899
Q ss_pred HHHHHHHHHHcCcccCccccCCccccCCCCeEEEeCCCccccHHHHhcccCCC-CCCCCcEEEEEeceEEeeceEEEeeE
Q 002690 677 LRNAYDILCQCHIKLPEIEGNDKYIDDGPPYLILLHPALGLLWEVTRQKFKGG-SVSKGSELQIEVAEFLWRNVQLDGSL 755 (892)
Q Consensus 677 ~~~~~~~L~~~g~~v~~~~~~~~~~~~gP~~~i~l~P~~~~~~~~~~~k~~~g-sis~~S~L~veG~~~~~~~v~ldGsl 755 (892)
|..+..||..+|.... ...| .|.|+|. +.+++++.+||++. ||.++++|+|+|++.|++||.|.|++
T Consensus 373 y~l~~~~l~~~~~~~~---------~~~p--~IeL~~~-f~~v~~f~~rf~~iPsl~~~d~LtV~Gdv~fG~~v~l~G~v 440 (469)
T PLN02474 373 YTLVDGFVIRNKARTN---------PSNP--SIELGPE-FKKVANFLSRFKSIPSIVELDSLKVSGDVWFGSGIVLKGKV 440 (469)
T ss_pred HHhccCeEEecCcccC---------CCCC--cEEECcc-cccHHhHHHhcCCCCCcccCCeEEEeeeeEECCCcEEEEEE
Confidence 9999888887776421 1245 5999998 78999999999975 89999999999999999999999999
Q ss_pred EEEeccCCCCceecCCCcc
Q 002690 756 IIVAENVMGSTRIADNGES 774 (892)
Q Consensus 756 vI~a~~~~g~~~~~~~g~~ 774 (892)
+|.|. .|.+...|+|.-
T Consensus 441 ~i~~~--~~~~~~ip~g~~ 457 (469)
T PLN02474 441 TITAK--SGVKLEIPDGAV 457 (469)
T ss_pred EEEcC--CCCeeecCCCcE
Confidence 99988 777777788765
No 7
>PF01704 UDPGP: UTP--glucose-1-phosphate uridylyltransferase; InterPro: IPR002618 This family consists of UTP--glucose-1-phosphate uridylyltransferases (2.7.7.9 from EC). Also known as UDP-glucose pyrophosphorylase (UDPGP) and Glucose-1-phosphate uridylyltransferase. UTP--glucose-1-phosphate uridylyltransferase catalyses the interconversion of MgUTP + glucose-1-phosphate and UDP-glucose + MgPPi []. UDP-glucose is an important intermediate in mammalian carbohydrate interconversion involved in various metabolic roles depending on tissue type []. In Dictyostelium discoideum (Slime mold), mutants in this enzyme abort the development cycle []. Also within this family is UDP-N-acetylglucosamine pyrophosphorylase (Q16222 from SWISSPROT) [] and two hypothetical proteins from Borrelia burgdorferi, the Lyme disease spirochaete (O51893 from SWISSPROT and O51036 from SWISSPROT).; GO: 0016779 nucleotidyltransferase activity, 0008152 metabolic process; PDB: 2OEG_A 2OEF_A 2YQS_A 2YQJ_A 2YQH_B 2YQC_A 3OH4_A 3OGZ_A 3OH3_A 3OH1_A ....
Probab=100.00 E-value=9e-73 Score=633.47 Aligned_cols=408 Identities=22% Similarity=0.241 Sum_probs=306.2
Q ss_pred hhhHHHHHHHHHHccccccccccccccccccccccccccCCCC-CccCCChHHHHHH-HHHhhhccCcEEEEEecCCccc
Q 002690 223 IIGYQVEVLELLAQSKFERKTTKSQHVHESMECQFLEIHVPSG-LDLSQNTEYAAQA-ALWGIEGLPELGEIYPLGGSAD 300 (892)
Q Consensus 223 L~~y~~~a~~lL~~s~~~~~~~~~~~~~~~~~~p~~~~~vP~g-~~l~~~~~~~~~~-~~~Gle~L~kvAvVlLAGGlGT 300 (892)
+..|+..+.+++.++.. .. ..++.+..|.. ...++++.....+ ...+...++|+|||+|||||||
T Consensus 2 ~~~f~~l~~~yl~~~~~--~~-----------~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~kvavl~LaGGlGT 68 (420)
T PF01704_consen 2 LDSFFSLFRRYLSESKS--HQ-----------IDWDKIMPPPPEEVVDYESLKEYEWDEGLEAIALGKVAVLKLAGGLGT 68 (420)
T ss_dssp HHHHHHHHHHHHHCCCC--CS-------------GGGEEE-GTGCEEEHHHHHHSCHHHHHHHHHTTCEEEEEEEESBSG
T ss_pred hHHHHHHHHHHHHhccc--CC-----------cccccCCCCChhhcCChhHhcccccccchhHHhhCCEEEEEEcCcccC
Confidence 45788999999987321 11 12344433332 2233322111111 3456666779999999999999
Q ss_pred cCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHHHHHHHhCCCCCCC
Q 002690 301 RLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLCERLRWFGRGQ 380 (892)
Q Consensus 301 RLG~~~PKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~~~Th~~T~~fle~n~yFGl~~ 380 (892)
|||+++||| ++||. +++||||++++||++++ ++|| +.||||||||+ +||++|++||++ |||++.
T Consensus 69 rlG~~~pK~--~~~v~----~~~t~ldl~~~qi~~l~----~~~~--~~iPl~iMtS~--~T~~~T~~~l~k--yfg~~~ 132 (420)
T PF01704_consen 69 RLGCSGPKG--LIPVR----EGKTFLDLIVEQIEALN----KKYG--VDIPLYIMTSF--NTHEDTRKFLEK--YFGLDV 132 (420)
T ss_dssp CCTESSBGG--GSEEE----TTEEHHHHHHHHHHHHH----HHHT--TT-EEEEEEET--TTHHHHHHHHHH--GCGSSC
T ss_pred ccCCCCCCc--ceecC----CcccHHHHHHHHHHHHh----cccc--ccceEEEecCc--ccHHHHHHHHHH--hcCCCc
Confidence 999999999 99994 89999999999999998 5667 89999999999 799999999999 999988
Q ss_pred CceEEEecCCeeeEecCCCcccccCCC-----CcccccCCCcHHHHHHHhcCchHHHHHcCceEEEEEeCCCCcccc-Ch
Q 002690 381 SSFQLFEQPLVPAVDAEDGQWLVMRPF-----APVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNVVAAT-DL 454 (892)
Q Consensus 381 ~qV~~F~Q~~vP~l~~~dGkilL~~~~-----~i~~~P~GHGdIy~aL~~sGlLd~l~~~Gikyi~V~qVDN~La~v-DP 454 (892)
+ |++|+|+++||++ .+|+++++.+. ...|+|+||||||.+|++||+||+|+++|+||+||+|||| |+++ ||
T Consensus 133 ~-v~~F~Q~~~P~i~-~d~~~~l~~~~~~~~~~~~w~P~GhGdi~~aL~~sG~Ld~l~~~G~eyifv~nvDN-L~a~~Dp 209 (420)
T PF01704_consen 133 D-VFFFKQSKLPAID-ADGKLPLESKPKDSIAEDEWYPPGHGDIYRALYNSGLLDKLLARGIEYIFVSNVDN-LGAVVDP 209 (420)
T ss_dssp C-EEEEEE-EEEEEE-TTTTCBEEETTEESEEEGGEEE-TGGGHHHHHHHTTHHHHHHHTT--EEEEEETTB-TT-TT-H
T ss_pred c-eEEEeecCcceEe-CCCccccccccccccchhhccCCCCcceehhhhccChHHHHHHcCCeEEEEEecCC-cccccCH
Confidence 8 9999999999999 67888887654 2359999999999999999999999999999999999999 6665 99
Q ss_pred hHHHHHHhhhhcCCceeEEEeeecCCCCcCceEEEEeecCCCccccceEEEEecccCccCCCCCCCCCCCccccCcc-ce
Q 002690 455 TLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQADFPA-NT 533 (892)
Q Consensus 455 ~il~flG~~~~~~~d~~~ksvvRK~~~~EkVGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~~~~dg~l~S~F~a-NI 533 (892)
.|+|+++.++++|++++ ++|+.++|++|+||+ .||+ +++|||+|+|++..++.++.++ |.. ||
T Consensus 210 ---~~lG~~~~~~~~~~~ev-v~Kt~~dek~Gvl~~---~~G~----~~vvEysqip~~~~~~~~~~~~-----~~~Fnt 273 (420)
T PF01704_consen 210 ---VFLGYMIEKNADFGMEV-VPKTSPDEKGGVLCR---YDGK----LQVVEYSQIPKEHMAEFKDIKG-----FLLFNT 273 (420)
T ss_dssp ---HHHHHHHHTT-SEEEEE-EE-CSTTTSSEEEEE---ETTE----EEEEEGGGS-HHGHHHHTSTTT-----SBEEEE
T ss_pred ---HHHHHHHhccchhheee-eecCCCCCceeEEEE---eCCc----cEEEEeccCCHHHHHhhhcccc-----ceEEEe
Confidence 56799999999999996 788889999999998 7999 9999999999996433333333 454 99
Q ss_pred eeeEEeHHHHHhhhcccccCCccccccccCCCceeecCCCCccccCcccccccchhhHhhhcccccccccccccccccce
Q 002690 534 NILYVDLASAELVGSSENERSLPGMVLNTKKPIVYMDNFGDTHSVPGGRLECTMQNIADNFLNTYSSRCYKGVEDDLDTF 613 (892)
Q Consensus 534 nn~~fsL~fL~~vl~~~~~~~Lp~hIanpKKkIpy~D~~g~~~~~~~~rLE~~Mqdi~d~F~~~~~~~~~kv~f~~~~Rf 613 (892)
||+||+|++|+++++. ....||+|++. |||||+|.. ++.+|||++|++.+..|.+ .+++ +++|
T Consensus 274 nNi~~~l~~l~~~~~~-~~~~Lp~h~a~--Kki~~~d~~-----~~~~q~Et~i~~~i~~f~~-------~~~v-~V~R- 336 (420)
T PF01704_consen 274 NNIWFSLDFLKRLLER-DELQLPIHVAK--KKIPYVDNG-----IKVIQFETAIGFAIFQFDN-------SFAV-EVPR- 336 (420)
T ss_dssp EEEEEEHHHHHHHHHT-TTCCS-EEEEE--EESSEECTE-----EEEEEEECGGGGGGGGCTS-------EEEE-EE-G-
T ss_pred ceeeEEHHHHHHHHHh-ccccCccEEcc--hhcccccCC-----ccEEeehhhhhchHhhccC-------cEEE-EEcH-
Confidence 9999999999999985 56789999999 999999932 4689999999998887754 2323 6788
Q ss_pred eeeeeccCCCchhhhhccccccccccccccccccCCCCCCCCCCccccccccCCCCCCcHHHHHHHHHHHHHHcCcccCc
Q 002690 614 MVYNERRRVTSSAKKKRKRADMSLHQCLNVRNCCNGTAGKSYDSNTFTRCLHQRTPDGSFLDILRNAYDILCQCHIKLPE 693 (892)
Q Consensus 614 ~~fsPvKn~~~sa~k~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~s~~~~~~~~tp~~~~~di~~~~~~~L~~~g~~v~~ 693 (892)
.+|+|+||+ ++++ ++++.-+.+.+
T Consensus 337 ~rF~PvKn~------------------------------------------------~dLl--------~~~Sd~y~~~~ 360 (420)
T PF01704_consen 337 DRFAPVKNT------------------------------------------------SDLL--------LVRSDLYDLDD 360 (420)
T ss_dssp GG--B-SSH------------------------------------------------HHHH--------HHHSTTEEEET
T ss_pred HHcCCcccc------------------------------------------------Ccce--------eeccceecccc
Confidence 889999995 2355 33332222222
Q ss_pred cccCCccccCC-CCeEEEeCCCccccHHHHhcccCCC-CCCCCcEEEEEeceEEeeceEEE
Q 002690 694 IEGNDKYIDDG-PPYLILLHPALGLLWEVTRQKFKGG-SVSKGSELQIEVAEFLWRNVQLD 752 (892)
Q Consensus 694 ~~~~~~~~~~g-P~~~i~l~P~~~~~~~~~~~k~~~g-sis~~S~L~veG~~~~~~~v~ld 752 (892)
....-.....+ .+++|.|++. +.+++++.+||+.. ||.++.+|+|.|++.|++||.|.
T Consensus 361 ~~~~~~~~~~~~~~p~i~lg~~-f~~v~~~~~r~~~ip~l~~~~~l~v~gdv~fg~~v~lk 420 (420)
T PF01704_consen 361 GTLVRNPLRAFHTRPLIKLGDH-FKKVDDFEKRFPSIPSLLELDSLTVSGDVTFGKNVVLK 420 (420)
T ss_dssp TEEEEHCCHCSSCHHEEEECGG-GSSHHHHHHHBSSS-BETTEEEEEEESSEEE-TT-EEE
T ss_pred ceeeecccccCCCCCeeccCcc-cCchHHhhhhcCCCCCcccCCcceEecceEECCCcEeC
Confidence 21100111112 2337999986 58999999999986 89999999999999999999884
No 8
>cd04193 UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1 to PPi and UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc), the activated form of GlcNAc, is a key precursor of N- and O-linked glycosylations. It is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker which anchors a variety of cell surface proteins to the plasma membrane. In bacteria, UDPGlcNAc represents an essential precursor for both peptidoglycan and lipopolysaccharide biosynthesis. Human UAP has two isoforms, resulting from alternative splicing of a single gene and differing by the presence or absence of 17 amino acids. UDPGlcNAc pyrophosphorylase shares significant sequence and structure conservation with UDPglucose pyrophosphorylase.
Probab=100.00 E-value=1.1e-71 Score=607.54 Aligned_cols=315 Identities=23% Similarity=0.311 Sum_probs=285.6
Q ss_pred HHHHHhhhccC--cEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEE
Q 002690 277 QAALWGIEGLP--ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAI 354 (892)
Q Consensus 277 ~~~~~Gle~L~--kvAvVlLAGGlGTRLG~~~PKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~I 354 (892)
+|++.|+++|+ ++|+|+||||+|||||++.||+ ++||+.+ +++||||+++++|++++.++.+.+|+++.|||+|
T Consensus 2 ~~~~~G~~~i~~~~va~viLaGG~GTRLg~~~PK~--l~pv~~~--~~k~ll~~~~e~l~~l~~~~~~~~~~~~~ip~~i 77 (323)
T cd04193 2 EWEEAGLKAIAEGKVAVLLLAGGQGTRLGFDGPKG--MFPVGLP--SKKSLFQLQAERILKLQELAGEASGKKVPIPWYI 77 (323)
T ss_pred hHHHHhHHHHhcCCEEEEEECCCcccccCCCCCeE--EEEecCC--CCCcHHHHHHHHHHHHHHHHhhccCCCCCceEEE
Confidence 46789999999 9999999999999999999999 9999876 8999999999999999999988888889999999
Q ss_pred ecCCCCCchHHHHHHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCcccccCCCcHHHHHHHhcCchHHHHH
Q 002690 355 MTSSAKNNHERITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHD 434 (892)
Q Consensus 355 MTS~~~~Th~~T~~fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dGkilL~~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~ 434 (892)
|||+ +||++|++||++|+|||+++++|++|+|+++||++ .+|+++++++++++|+|+||||||.+|+++|+|++|++
T Consensus 78 mtS~--~t~~~t~~~~~~~~~fGl~~~~i~~f~Q~~~P~~~-~~g~~~l~~~~~~~~~P~GhG~i~~aL~~sG~l~~l~~ 154 (323)
T cd04193 78 MTSE--ATHEETRKFFKENNYFGLDPEQVHFFQQGMLPCVD-FDGKILLEEKGKIAMAPNGNGGLYKALQTAGILEDMKK 154 (323)
T ss_pred EcCh--hHhHHHHHHHHhCCcCCCCCceEEEEecCceeeEc-CCCccccCCCCccccCCCCchHHHHHHHHCChHHHHHh
Confidence 9998 69999999999999999999999999999999998 78999999999999999999999999999999999999
Q ss_pred cCceEEEEEeCCCCcccc-ChhHHHHHHhhhhcCCceeEEEeeecCCCCcCceEEEEeecCCCccccceEEEEecccCcc
Q 002690 435 NGRKGATVRQVSNVVAAT-DLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKF 513 (892)
Q Consensus 435 ~Gikyi~V~qVDN~La~v-DP~il~flG~~~~~~~d~~~ksvvRK~~~~EkVGvL~~~~~~dGk~~~~~~vVEYsEl~~~ 513 (892)
+|+||++|+||||+|+++ || .|+|+++.+++++.+++ ++|+.++|+||++|. .||+ +++|||+|+|++
T Consensus 155 ~G~~yi~v~~vDN~L~~~~Dp---~~lG~~~~~~~~~~~kv-v~k~~~~ekvG~l~~---~~g~----~~vvEysel~~~ 223 (323)
T cd04193 155 RGIKYIHVYSVDNILVKVADP---VFIGFCISKGADVGAKV-VRKRYPTEKVGVVVL---VDGK----PQVVEYSEISDE 223 (323)
T ss_pred CCCEEEEEEecCcccccccCH---HHhHHHHHcCCceEEEE-EECCCCCCceeEEEE---ECCe----EEEEEeecCCHH
Confidence 999999999999999987 99 67899999999999996 778889999999998 6999 899999999999
Q ss_pred CCCCCCCCCCCccccCcc-ceeeeEEeHHHHHhhhcccccCCccccccccCCCceeecCCCCcc---ccCcccccccchh
Q 002690 514 GITRGPFSSNGLQADFPA-NTNILYVDLASAELVGSSENERSLPGMVLNTKKPIVYMDNFGDTH---SVPGGRLECTMQN 589 (892)
Q Consensus 514 ~~~~~~~~dg~l~S~F~a-NInn~~fsL~fL~~vl~~~~~~~Lp~hIanpKKkIpy~D~~g~~~---~~~~~rLE~~Mqd 589 (892)
. .+...++|++. |.. |||+|+|+++||+++++. ....||+|++. |||||+|.+|... .++++|||+||+|
T Consensus 224 ~-~~~~~~~g~l~--f~~~ni~~~~fsl~fl~~~~~~-~~~~l~~h~a~--Kki~~~d~~~~~~~p~~~n~~klE~fifd 297 (323)
T cd04193 224 L-AEKRDADGELQ--YNAGNIANHFFSLDFLEKAAEM-EEPSLPYHIAK--KKIPYVDLEGGLVKPDEPNGIKLELFIFD 297 (323)
T ss_pred H-HhccCcCCcEe--cccchHhhheeCHHHHHHHHhh-ccccCCceEec--cccCcccCcCcEeccCCCcEEEeHHHHHH
Confidence 7 44556678775 655 999999999999999874 44579999999 9999999776532 3457999999988
Q ss_pred hHhhhcccccccccccccccccceeeeeeccCCC
Q 002690 590 IADNFLNTYSSRCYKGVEDDLDTFMVYNERRRVT 623 (892)
Q Consensus 590 i~d~F~~~~~~~~~kv~f~~~~Rf~~fsPvKn~~ 623 (892)
++..+ .+++..+++|..+|+|+||++
T Consensus 298 ~~~~~--------~~~~~~eV~R~~~F~PvKn~~ 323 (323)
T cd04193 298 VFPFA--------KNFVCLEVDREEEFSPLKNAD 323 (323)
T ss_pred HHHhC--------CceEEEEEChhhccccCcCCC
Confidence 87655 356667889999999999963
No 9
>cd00897 UGPase_euk Eukaryotic UGPase catalyses the synthesis of UDP-Glucose. UGPase (UDP-Glucose Pyrophosphorylase) catalyzes the reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids, glycoproteins, and proteoglycans. UGPase is found in both prokaryotes and eukaryotes. Interestingly, while the prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. This family consists of mainly eukaryotic UTP-glucose-1-phosphate uridylyltransferases.
Probab=100.00 E-value=1.2e-67 Score=569.45 Aligned_cols=283 Identities=20% Similarity=0.229 Sum_probs=249.2
Q ss_pred cCcEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHH
Q 002690 286 LPELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHER 365 (892)
Q Consensus 286 L~kvAvVlLAGGlGTRLG~~~PKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~~~Th~~ 365 (892)
|+|+|||+||||||||||+++||| +|||. +++||||++++||+++++ .+| +.||||||||+ +||++
T Consensus 1 l~kvavl~LaGG~GTRLG~~~pKg--~~~v~----~~~s~l~l~~~~i~~l~~----~~~--~~iPl~iMtS~--~T~~~ 66 (300)
T cd00897 1 LNKLVVLKLNGGLGTSMGCTGPKS--LIEVR----DGKTFLDLTVQQIEHLNK----TYG--VDVPLVLMNSF--NTDED 66 (300)
T ss_pred CCcEEEEEecCCcccccCCCCCce--eeecC----CCCcHHHHHHHHHHHHHH----HcC--CCceEEEECCC--cchHH
Confidence 579999999999999999999999 99993 899999999999999994 667 79999999999 79999
Q ss_pred HHHHHHHhCCCCCCCCceEEEecCCeeeEecCCCccccc---CCCCcccccCCCcHHHHHHHhcCchHHHHHcCceEEEE
Q 002690 366 ITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVM---RPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATV 442 (892)
Q Consensus 366 T~~fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dGkilL~---~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~~Gikyi~V 442 (892)
|++||++|++ +++||++|+|+++||++ .+|+++++ ++++++|+|+||||+|.+|++||+|++|+++|+||++|
T Consensus 67 T~~~l~~~~~---~~~~v~~F~Q~~~P~~~-~~~~~~l~~~~~~~~~~~~P~GhG~i~~aL~~sG~L~~l~~~G~~yi~v 142 (300)
T cd00897 67 TKKILKKYAG---VNVDIHTFNQSRYPRIS-KETLLPVPSWADSPDEEWYPPGHGDIFESLYNSGLLDTLLAQGKEYLFV 142 (300)
T ss_pred HHHHHHHcCC---CccCeEEEecCCcccCc-cccCccccccCCCcceeeccCCCchHHHHHHHCCcHHHHHhcCCEEEEE
Confidence 9999999886 78999999999999999 67888887 88999999999999999999999999999999999999
Q ss_pred EeCCCCccccChhHHHHHHhhhhcCCceeEEEeeecCCCCcCceEEEEeecCCCccccceEEEEecccCccCCCCCCCCC
Q 002690 443 RQVSNVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSS 522 (892)
Q Consensus 443 ~qVDN~La~vDP~il~flG~~~~~~~d~~~ksvvRK~~~~EkVGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~~~~d 522 (892)
+||||+++.+|| .|+||++.++++|.+++ ++|+.++|+||++|+ .||+ +++|||+|+|++...+. +
T Consensus 143 ~nvDNL~a~~Dp---~~lg~~~~~~~~~~~ev-v~Kt~~dek~G~l~~---~~g~----~~vvEyse~p~e~~~~~---~ 208 (300)
T cd00897 143 SNIDNLGATVDL---RILNHMVDNKAEYIMEV-TDKTRADVKGGTLIQ---YEGK----LRLLEIAQVPKEHVDEF---K 208 (300)
T ss_pred EecccccccCCH---HHHHHHHhcCCceEEEE-eecCCCCCcccEEEE---ECCE----EEEEEeccCCHHHHHhh---c
Confidence 999996665699 57799999999999996 889999999999997 7999 99999999999863221 1
Q ss_pred CCccccCcc-ceeeeEEeHHHHHhhhcccccCCccccccccCCCceeecCCCCccccCcccccccchhhHhhhccccccc
Q 002690 523 NGLQADFPA-NTNILYVDLASAELVGSSENERSLPGMVLNTKKPIVYMDNFGDTHSVPGGRLECTMQNIADNFLNTYSSR 601 (892)
Q Consensus 523 g~l~S~F~a-NInn~~fsL~fL~~vl~~~~~~~Lp~hIanpKKkIpy~D~~g~~~~~~~~rLE~~Mqdi~d~F~~~~~~~ 601 (892)
+.+ .|+. |||||||+++||+++++. ....||+|++. |+||+ + ++++|||++|+|++..|++
T Consensus 209 ~~~--~~~~~nt~n~~~~l~~L~~~~~~-~~~~lp~h~~~--K~v~p---~-----~~~~qlE~~i~da~~~~~~----- 270 (300)
T cd00897 209 SIK--KFKIFNTNNLWVNLKAVKRVVEE-NALDLEIIVNP--KTVDG---G-----LNVIQLETAVGAAIKNFDN----- 270 (300)
T ss_pred Ccc--cceEEEEeEEEEEHHHHHHHHHh-ccCCCCeeecc--cccCC---C-----CCEEEeHhHhhhHHHhCCC-----
Confidence 333 4888 999999999999999863 44569999988 77752 1 4689999999999887754
Q ss_pred ccccccccccceeeeeeccCC
Q 002690 602 CYKGVEDDLDTFMVYNERRRV 622 (892)
Q Consensus 602 ~~kv~f~~~~Rf~~fsPvKn~ 622 (892)
+.+.+++|. .|+|+||+
T Consensus 271 ---~~~~eV~R~-rF~PvKn~ 287 (300)
T cd00897 271 ---ALGVNVPRS-RFLPVKTT 287 (300)
T ss_pred ---cEEEEEChh-hcCCCCCh
Confidence 234467777 48999996
No 10
>KOG2638 consensus UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2e-64 Score=548.44 Aligned_cols=459 Identities=19% Similarity=0.226 Sum_probs=366.3
Q ss_pred ccccccchhhhhhHHHHHHHHHHhhhhccccCCCccchhhhhhhhhHHHHHHHHHHHHHHhccccCcCchhhHHHHHHHH
Q 002690 154 LEPEYVESEARSDIKSALYALVEFIDRLDVNGRNSEAKDAVLEIEQVKDLNKLLKTLAEIEQFYDCVGGIIGYQVEVLEL 233 (892)
Q Consensus 154 ~w~el~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~d~~~~ek~~Ll~qL~~ld~~y~~~gGL~~y~~~a~~l 233 (892)
.|++.....+.++||++|.+|+++.+. .+++.|-.++ + .|+....++
T Consensus 18 ~F~~~~~~~~~s~mk~~l~~l~~~~~~--------------------~~k~~~~~e~---~----------~F~~Lf~Ry 64 (498)
T KOG2638|consen 18 EFDSVTKDEALSQMKNELDKLLSTSEP--------------------EDKNHFKTEL---S----------GFFNLFSRY 64 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccCch--------------------hhhhcchhhH---H----------HHHHHHHHH
Confidence 455443446889999999999999772 2566665533 2 355677788
Q ss_pred HHcccccccccccccccccccccccccc-CCCCCccCCChHHHHHHHHHhhhccCcEEEEEecCCccccCCCCCCCCCce
Q 002690 234 LAQSKFERKTTKSQHVHESMECQFLEIH-VPSGLDLSQNTEYAAQAALWGIEGLPELGEIYPLGGSADRLGLVDHETGEC 312 (892)
Q Consensus 234 L~~s~~~~~~~~~~~~~~~~~~p~~~~~-vP~g~~l~~~~~~~~~~~~~Gle~L~kvAvVlLAGGlGTRLG~~~PKgg~~ 312 (892)
|.+... . ..|+++. +|++....|++-.. . +.+.+.|.|+|||+|+||+||.|||.+||+ +
T Consensus 65 L~~~~~--~------------~~wdkI~~p~~d~vv~y~~i~~--~-~~~~~~L~KLavlKLNGGlGttmGc~gPKS--~ 125 (498)
T KOG2638|consen 65 LREKAP--T------------IDWDKIRPPPEDAVVPYDDIKN--V-ELSKSLLNKLAVLKLNGGLGTTMGCKGPKS--V 125 (498)
T ss_pred HhccCC--c------------cchhhccCCChhhccccccccc--h-hhHHHhhhheEEEEecCCcCCccccCCCce--e
Confidence 866420 1 2456654 44454445544211 1 567788999999999999999999999999 9
Q ss_pred eeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHHHHHHHhCCCCCCCCceEEEecCCee
Q 002690 313 LPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLCERLRWFGRGQSSFQLFEQPLVP 392 (892)
Q Consensus 313 lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~~~Th~~T~~fle~n~yFGl~~~qV~~F~Q~~vP 392 (892)
++|+ +|.||+|+.++||+.|+ ++|+ +++||++|||+ +|+++|.+++++|.++ +.+|+.|.|+++|
T Consensus 126 ieVR----~g~tFLDL~V~QIe~LN----~~Y~--~dVPlvLMNSf--nTdedT~kil~ky~~~---kv~i~TF~QS~~P 190 (498)
T KOG2638|consen 126 IEVR----DGLTFLDLTVRQIENLN----KTYN--VDVPLVLMNSF--NTDEDTQKILKKYAGS---KVDIKTFNQSKYP 190 (498)
T ss_pred EEEc----CCCchhHHHHHHHHHHH----hhcC--CCCCEEEeccc--ccchHHHHHHHHhcCC---ceeEEEeccccCC
Confidence 9996 99999999999999998 6888 89999999999 8999999999998875 5689999999999
Q ss_pred eEecCCCccccc---CCCCcccccCCCcHHHHHHHhcCchHHHHHcCceEEEEEeCCCCccccChhHHHHHHhhhhcCCc
Q 002690 393 AVDAEDGQWLVM---RPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNVVAATDLTLLALAGIGLHHGKK 469 (892)
Q Consensus 393 ~l~~~dGkilL~---~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~~Gikyi~V~qVDN~La~vDP~il~flG~~~~~~~d 469 (892)
.++.++.-++.. +...-+|+|+||||+|.+|+.||+||+|+++|++|+||+|+||++|.+|..|+ .+.+..+.+
T Consensus 191 Ri~~etlLPv~~~~~d~~~d~WYPPGHGd~f~sl~nSG~Ld~llaqGkEylFVSNiDNLGAtvDL~IL---n~~i~~~~e 267 (498)
T KOG2638|consen 191 RIDKETLLPVPKLEADSDNEAWYPPGHGDLFDSLHNSGLLDKLLAQGKEYLFVSNIDNLGATVDLNIL---NHVINNNIE 267 (498)
T ss_pred ccccccccCCCcccCCCCcccccCCCCccHHHHHhccchHHHHHhCCceEEEEeccccccceeeHHHH---HHHhcCCCc
Confidence 999665444432 44668999999999999999999999999999999999999999999999876 888999999
Q ss_pred eeEEEeeecCCCCcCceEEEEeecCCCccccceEEEEecccCccCCCCCCCCCCCccccCcc-ceeeeEEeHHHHHhhhc
Q 002690 470 LGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQADFPA-NTNILYVDLASAELVGS 548 (892)
Q Consensus 470 ~~~ksvvRK~~~~EkVGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~~~~dg~l~S~F~a-NInn~~fsL~fL~~vl~ 548 (892)
|.|++ +.|+.++.|+|+|+. ++|+ ++.+||+|+|++.. +++...+.|.. ||||+|++|.+++++++
T Consensus 268 y~MEv-TdKT~aDvKgGtLi~---y~G~----lrlLEiaQVP~ehv-----~eFkS~kkFkifNTNNlWinLkavKrlve 334 (498)
T KOG2638|consen 268 YLMEV-TDKTRADVKGGTLIQ---YEGK----LRLLEIAQVPKEHV-----DEFKSIKKFKIFNTNNLWINLKAVKKLVE 334 (498)
T ss_pred eEEEe-cccchhhcccceEEe---ecCE----EEEEEeccCChhHh-----hhhccceeEEEeccCCeEEehHHHHHHhh
Confidence 99995 889999999999998 8999 99999999999973 45667788998 99999999999999998
Q ss_pred ccccCCccccccccCCCceeecCCCCccccCcccccccchhhHhhhcccccccccccccccccceeeeeeccCCCchhhh
Q 002690 549 SENERSLPGMVLNTKKPIVYMDNFGDTHSVPGGRLECTMQNIADNFLNTYSSRCYKGVEDDLDTFMVYNERRRVTSSAKK 628 (892)
Q Consensus 549 ~~~~~~Lp~hIanpKKkIpy~D~~g~~~~~~~~rLE~~Mqdi~d~F~~~~~~~~~kv~f~~~~Rf~~fsPvKn~~~sa~k 628 (892)
. ..-.|+ .|.|+| .+|.. ...+|||++++++++.|+++ .+.+ ..++||+ |||+.
T Consensus 335 ~-~~l~me-Ii~N~k----ti~~~-----~~viQleTa~GaaIk~F~na---~gv~---VpRsRFl---PVKt~------ 388 (498)
T KOG2638|consen 335 E-NALNME-IIVNPK----TIDRG-----IEVIQLETAAGAAIKFFDNA---IGVN---VPRSRFL---PVKTC------ 388 (498)
T ss_pred c-Ccccce-eecChh----hccCC-----ceEEEEhhhhhHHHHhCCCc---eeee---ccccccc---ccccc------
Confidence 4 444454 677977 66632 35799999999999999882 2223 3688998 99984
Q ss_pred hccccccccccccccccccCCCCCCCCCCccccccccCCCCCCcHHHHHHHHHHHHHHcCcccCccccCCccccCC-CCe
Q 002690 629 KRKRADMSLHQCLNVRNCCNGTAGKSYDSNTFTRCLHQRTPDGSFLDILRNAYDILCQCHIKLPEIEGNDKYIDDG-PPY 707 (892)
Q Consensus 629 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~s~~~~~~~~tp~~~~~di~~~~~~~L~~~g~~v~~~~~~~~~~~~g-P~~ 707 (892)
+|++.++++. +.++....... ..+.| |++
T Consensus 389 ------------------------------------------sDLlLv~S~L------y~ld~Gsl~l~--~~r~~~t~P 418 (498)
T KOG2638|consen 389 ------------------------------------------SDLLLVMSNL------YDLDNGSLTLS--PSRFGPTPP 418 (498)
T ss_pred ------------------------------------------ccceeeecce------eeccCCeEEec--hhhcCCCCC
Confidence 3455333332 11111111111 11223 444
Q ss_pred EEEeCCCccccHHHHhcccCCC-CCCCCcEEEEEeceEEeeceEEEeeEEEEeccCCCCceecCCCcc
Q 002690 708 LILLHPALGLLWEVTRQKFKGG-SVSKGSELQIEVAEFLWRNVQLDGSLIIVAENVMGSTRIADNGES 774 (892)
Q Consensus 708 ~i~l~P~~~~~~~~~~~k~~~g-sis~~S~L~veG~~~~~~~v~ldGslvI~a~~~~g~~~~~~~g~~ 774 (892)
.|.|.+. +.+++++..||++. +|.+..+|+|.|++.|++||.|.|+++|.|+ .|..--+|+|.-
T Consensus 419 ~vkLg~~-F~kv~~f~~rfp~iP~ileLdhLtVsGdV~FGknV~LkGtViIia~--~~~~i~IP~gsV 483 (498)
T KOG2638|consen 419 LVKLGSE-FKKVEDFLGRFPGIPDILELDHLTVSGDVWFGKNVSLKGTVIIIAN--EGDRIDIPDGSV 483 (498)
T ss_pred eeecchh-hhHHHHHHhcCCCCCccceeceEEEeccEEeccceEEeeEEEEEec--CCCeeecCCCCe
Confidence 8999999 78999999999996 8999999999999999999999999999999 778777888854
No 11
>COG4284 UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=6.3e-61 Score=533.78 Aligned_cols=386 Identities=21% Similarity=0.239 Sum_probs=300.7
Q ss_pred cHHHHHHHHHHcCccccccccccccchhhhhhHHHHHHHHHHhhhhccccCCCccchhhhhhhhhHHHHHHHHHHHHHHh
Q 002690 135 DQLFLIKCVIAAGQEHVLNLEPEYVESEARSDIKSALYALVEFIDRLDVNGRNSEAKDAVLEIEQVKDLNKLLKTLAEIE 214 (892)
Q Consensus 135 ~~~~L~~~L~~~GQeHll~~w~el~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~d~~~~ek~~Ll~qL~~ld 214 (892)
+.......|.+..|+|+|..|..++ + ++..+..+++..+|
T Consensus 14 ~f~~~~~~l~~~~~~h~l~~l~~~s-------------------------------------~---~~~~~~~~~~~~~d 53 (472)
T COG4284 14 KFNSDAVSLAASQQEHLLDKLKQSS-------------------------------------E---KQALKSFEKLLLLD 53 (472)
T ss_pred hhhcchhhhhHHHHHHHHHHhhhhc-------------------------------------h---HHHHhhhhhhhhhH
Confidence 4455677788888999999998742 1 14555666666777
Q ss_pred ccccCcCchhhHHHHHHHHHHccccccccccccccccccccccccccCCCCCcc-CCChHHHHHHHHHhhhc--cCcEEE
Q 002690 215 QFYDCVGGIIGYQVEVLELLAQSKFERKTTKSQHVHESMECQFLEIHVPSGLDL-SQNTEYAAQAALWGIEG--LPELGE 291 (892)
Q Consensus 215 ~~y~~~gGL~~y~~~a~~lL~~s~~~~~~~~~~~~~~~~~~p~~~~~vP~g~~l-~~~~~~~~~~~~~Gle~--L~kvAv 291 (892)
.+|+ ..+++|..++ . .. ...++.+..|....+ .+++ ...+.||+.. ++|+||
T Consensus 54 ~~f~----------l~~~~ll~~s-~-~s----------~~~~~ki~~~~~d~~~~~~~---~~~~~~~l~~~~~~klAv 108 (472)
T COG4284 54 IFFF----------LFSRYLLNTS-K-AS----------TQEWDKIRPPNPDDVVDYEK---KILEGWGLLKIKLGKLAV 108 (472)
T ss_pred HHHH----------HHHHHHhhcC-c-cc----------ceeecccCCCChhhhccchh---hccchhhhhhhhcCceEE
Confidence 6543 3344444332 1 11 012344455542222 2222 1122346666 679999
Q ss_pred EEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHHHHHH
Q 002690 292 IYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLCE 371 (892)
Q Consensus 292 VlLAGGlGTRLG~~~PKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~~~Th~~T~~fle 371 (892)
|+||||||||||+++||| +|+|+ +|+||||+++|||+.++ .+|+ ++||||||||. |++.|..||+
T Consensus 109 l~LaGGqGtrlG~~gPKg--l~~V~----~gks~~dl~~~qIk~ln----~~~~--~~vP~~iMtS~---nt~~t~s~f~ 173 (472)
T COG4284 109 LKLAGGQGTRLGCDGPKG--LFEVK----DGKSLFDLQAEQIKYLN----RQYN--VDVPLYIMTSL---NTEETDSYFK 173 (472)
T ss_pred EEecCCcccccccCCCce--eEEec----CCCcHHHHHHHHHHHHH----HHhC--CCCCEEEEecC---CcHHHHHHHh
Confidence 999999999999999999 99996 89999999999999999 4667 89999999996 9999999999
Q ss_pred HhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCC-cccccCCCcHHHHHHHhcCchHHHHHcCceEEEEEeCCCCcc
Q 002690 372 RLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFA-PVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNVVA 450 (892)
Q Consensus 372 ~n~yFGl~~~qV~~F~Q~~vP~l~~~dGkilL~~~~~-i~~~P~GHGdIy~aL~~sGlLd~l~~~Gikyi~V~qVDN~La 450 (892)
.|+|||+++++|+||+|+.+||+...+|++++.+.++ ++|+|+||||+|.+|+.||++++|.++|++|++|+|||| |+
T Consensus 174 ~~~Y~~~~k~~I~fF~Q~~~P~~~~~sg~~~~~~~~~~~~~~P~GnG~lf~aL~~SG~le~l~~~G~e~lfV~nIDN-L~ 252 (472)
T COG4284 174 SNDYFGLDKEDIFFFVQSLFPRLLSDSGLPFLESDDSNLAWYPPGNGDLFKALKSSGILEKLIAQGIEYLFVSNIDN-LG 252 (472)
T ss_pred hhhhcCCCHHHeEEEecCCcceeecccCccccccCCcccccCCCCCccHHHHHHhcchHHHHHhcCceEEEEecccc-cc
Confidence 9999999999999999999996655889999986666 999999999999999999999999999999999999999 55
Q ss_pred c-cChhHHHHHHhhhhcCCceeEEEeeecCCCCcCceEEEEeecCCCccccceEEEEecccCccCCCCCCCCCCCccccC
Q 002690 451 A-TDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQADF 529 (892)
Q Consensus 451 ~-vDP~il~flG~~~~~~~d~~~ksvvRK~~~~EkVGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~~~~dg~l~S~F 529 (892)
+ +|| .|+|+++.++.++.+++ ++|+.|+|+||+|+. .||+ ++++||+|+|++. .+.-..++.+ ..|
T Consensus 253 ~~vD~---~~lg~~~~~~~e~~~e~-t~Kt~a~ekvG~Lv~---~~g~----~rllEysev~~~~-~~~~~s~~~~-~~~ 319 (472)
T COG4284 253 ATVDL---KFLGFMAETNYEYLMET-TDKTKADEKVGILVT---YDGK----LRLLEYSEVPNEH-REEFTSDGKL-KYF 319 (472)
T ss_pred cccCH---HHHHHHHhcCcceeEEE-eecccccccceEEEE---eCCc----eEEEEEecCChhH-hhhhccccce-eee
Confidence 5 599 56799999999999996 888999999999997 8999 9999999999986 3333345544 245
Q ss_pred cc-ceeeeEEeHHHHHhhhcccccCCccccccccCCCceeecCC---CCccccCcccccc-cchhhHhhhcccccccccc
Q 002690 530 PA-NTNILYVDLASAELVGSSENERSLPGMVLNTKKPIVYMDNF---GDTHSVPGGRLEC-TMQNIADNFLNTYSSRCYK 604 (892)
Q Consensus 530 ~a-NInn~~fsL~fL~~vl~~~~~~~Lp~hIanpKKkIpy~D~~---g~~~~~~~~rLE~-~Mqdi~d~F~~~~~~~~~k 604 (892)
.+ ||.+|++++++|.+... -.||.|.++ ||||+.|.. .+...+...++|. |+- +|+|.- ...+.
T Consensus 320 n~Nni~l~~~~~~~l~~~~~----l~Lpi~~a~--Kki~~~~~~~~~~t~i~~~i~kfe~~FI~--fDlF~~---~s~~~ 388 (472)
T COG4284 320 NTNNIWLHLFSVKFLKEAAY----LNLPIHKAI--KKIPQLDNIIQLTTAIGKNISKFENEFIP--FDLFLY---KSDEN 388 (472)
T ss_pred ccccceeehhHHHHHHhhhc----cCCcchhhh--cccCccccceeeccccccchhhccccccc--eeeeEE---EecCC
Confidence 66 48888888888877654 479999999 999999811 1112345678884 541 666743 12367
Q ss_pred cccccccceeeeeeccCCCch
Q 002690 605 GVEDDLDTFMVYNERRRVTSS 625 (892)
Q Consensus 605 v~f~~~~Rf~~fsPvKn~~~s 625 (892)
+++..++|+-+|+|+||-.++
T Consensus 389 ~~~~~vpR~~~f~Plkn~~~~ 409 (472)
T COG4284 389 GGLLLVPRFGEFSPLKNLEGS 409 (472)
T ss_pred CceEeccccCCCCchhhccCC
Confidence 888889999999999998665
No 12
>cd04180 UGPase_euk_like Eukaryotic UGPase-like includes UDPase and UDPGlcNAc pyrophosphorylase enzymes. This family includes UDP-Glucose Pyrophosphorylase (UDPase) and UDPGlcNAc pyrophosphorylase enzymes. The two enzymes share significant sequence and structure similarity. UDP-Glucose Pyrophosphorylase catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans . UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1P from PPi and UDPGlcNAc, which is a key precursor of N- and O-linked glycosylations and is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker anchoring a variety o
Probab=100.00 E-value=4.6e-56 Score=473.39 Aligned_cols=235 Identities=19% Similarity=0.197 Sum_probs=208.4
Q ss_pred EEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHHH
Q 002690 289 LGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITS 368 (892)
Q Consensus 289 vAvVlLAGGlGTRLG~~~PKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~~~Th~~T~~ 368 (892)
+|+|+||||+|||||++.||+ ++||+++ +|+||||+++++|++++.++. .| +.|||+||||+ +||+.|++
T Consensus 1 va~viLaGG~GtRLg~~~PK~--~~~i~~~--~gk~~l~~~~~~i~~~~~~~~--~~--~~Ip~~imts~--~t~~~t~~ 70 (266)
T cd04180 1 VAVVLLAGGLGTRLGKDGPKS--STDVGLP--SGQCFLQLIGEKILTLQEIDL--YS--CKIPEQLMNSK--YTHEKTQC 70 (266)
T ss_pred CEEEEECCCCccccCCCCCce--eeeecCC--CCCcHHHHHHHHHHHHHHHhh--cC--CCCCEEEEcCc--hhHHHHHH
Confidence 689999999999999999999 9999877 999999999999999996652 24 78999999999 79999999
Q ss_pred HHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCcccccCCCcHHHHHHHhcCchHHHHHcCceEEEEEeCCCC
Q 002690 369 LCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNV 448 (892)
Q Consensus 369 fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dGkilL~~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~~Gikyi~V~qVDN~ 448 (892)
||++|+ +++++|++|+|+++||++ .+|.+.++++++++|+|+||||||.+|+.+|+|++|+++|++|++|+|+||+
T Consensus 71 ~l~~~~---~~~~~v~~f~Q~~~P~~~-~~~~~~~~~~~~~~~~P~GnGdi~~~L~~sglLd~l~~~G~~yi~v~~vDN~ 146 (266)
T cd04180 71 YFEKIN---QKNSYVITFMQGKLPLKN-DDDARDPHNKTKCHLFPCGHGDVVLALIHSGHLNKLLEKGYRYIHFIGVDNL 146 (266)
T ss_pred HHHHcC---CCCCceEEEEeCCceEEe-CCCCcccCCCCceeeccCCcHHHHHHHHHCChHHHHHHcCCEEEEEEccCcc
Confidence 999998 578999999999999999 5677788889999999999999999999999999999999999999999999
Q ss_pred cccc-ChhHHHHHHhhhhcCCceeEEEeeecCCCCcCceEEEEeecCC-CccccceEEEEecccCccCCCCC----CCCC
Q 002690 449 VAAT-DLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLD-GKWAYGLSCIEYTEFDKFGITRG----PFSS 522 (892)
Q Consensus 449 La~v-DP~il~flG~~~~~~~d~~~ksvvRK~~~~EkVGvL~~~~~~d-Gk~~~~~~vVEYsEl~~~~~~~~----~~~d 522 (892)
|+++ || .|+|+++..+.++.+++ ++|+.++|++|++|. .+ |+ ++||||+|+|++..... +.++
T Consensus 147 la~v~DP---~~lG~~~~~~~~~~~kv-v~K~~~d~k~G~~~~---~~~g~----~~~vEyse~~~~~~~~~~~~~~~~~ 215 (266)
T cd04180 147 LVKVADP---LFIGIAIQNRKAINQKV-VPKTRNEESGGYRIA---NINGR----VQLLEYDQIKKLLKQKMVNNQIPKD 215 (266)
T ss_pred CccccCH---HHHHHHHHcCCCEEEEE-EECCCCCCeEEEEEE---ecCCC----EEEEEeccCCHHHHhccccccCcCC
Confidence 9999 99 56799999999999996 777889999999997 55 88 99999999999862221 1122
Q ss_pred CCccccCccceeeeEEeHHHHHhhhc
Q 002690 523 NGLQADFPANTNILYVDLASAELVGS 548 (892)
Q Consensus 523 g~l~S~F~aNInn~~fsL~fL~~vl~ 548 (892)
...++.+++|||||||+|+||+++++
T Consensus 216 ~~~~~~~~~n~~~~~~~l~~l~~~~~ 241 (266)
T cd04180 216 IDDAPFFLFNTNNLINFLVEFKDRVD 241 (266)
T ss_pred CCceeeccceEEEEEEEHHHHHHHHH
Confidence 23335567799999999999999873
No 13
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=97.69 E-value=0.0018 Score=72.57 Aligned_cols=196 Identities=11% Similarity=0.104 Sum_probs=116.3
Q ss_pred CcEEEEEecCCccccCCC---CCCCCCceeeccccCCCCC-cchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCc
Q 002690 287 PELGEIYPLGGSADRLGL---VDHETGECLPAAMLPYCGR-TLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNN 362 (892)
Q Consensus 287 ~kvAvVlLAGGlGTRLG~---~~PKgg~~lpV~l~p~sgk-TlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~~~T 362 (892)
+++-.|+||||.||||.- +.||. ++|+ .|+ ++++++++.+... | .--++|.|.. .
T Consensus 2 ~~m~avILAaG~GtRl~plT~~~PK~--llpv-----~gk~pli~~~l~~l~~~--------G---i~~i~iv~~~---~ 60 (380)
T PRK05293 2 KEMLAMILAGGQGTRLGKLTKNIAKP--AVPF-----GGKYRIIDFTLSNCANS--------G---IDTVGVLTQY---Q 60 (380)
T ss_pred CcEEEEEECCCCCcccchhhcCCccc--eeee-----CCceeehhHHHHHHHhC--------C---CCEEEEEecC---C
Confidence 357789999999999996 78999 9998 688 7999999988653 4 2246788876 7
Q ss_pred hHHHHHHHHHhCCCCCCCCc--eEEEecCCeeeEecCCCcccccCCCCcccccCCCcH-HHHHHHhcCchHHHHHcCceE
Q 002690 363 HERITSLCERLRWFGRGQSS--FQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGA-IWKLAHDKGIFKWFHDNGRKG 439 (892)
Q Consensus 363 h~~T~~fle~n~yFGl~~~q--V~~F~Q~~vP~l~~~dGkilL~~~~~i~~~P~GHGd-Iy~aL~~sGlLd~l~~~Giky 439 (892)
.+...++|.+...||++..+ +.+ .| |... .+ -.-.|-|.|+ ++.++. .+....-++
T Consensus 61 ~~~i~~~~~~~~~~~~~~~~~~~~i-~~---~~~~-~~----------~~~~~~Gta~al~~a~~------~l~~~~~~~ 119 (380)
T PRK05293 61 PLELNNHIGIGSPWDLDRINGGVTI-LP---PYSE-SE----------GGKWYKGTAHAIYQNID------YIDQYDPEY 119 (380)
T ss_pred HHHHHHHHhCCCcccccCCCCCEEE-eC---Cccc-CC----------CCcccCCcHHHHHHHHH------HHHhCCCCE
Confidence 88899999876667764321 211 11 0010 00 0011346544 343332 232222368
Q ss_pred EEEEeCCCCccccChhHHHHHHhhhhcCCceeEEEeeecC-CCCcCceEEEEeecCCCccccceEEEEecccCccCCCCC
Q 002690 440 ATVRQVSNVVAATDLTLLALAGIGLHHGKKLGFASCKRSS-GATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRG 518 (892)
Q Consensus 440 i~V~qVDN~La~vDP~il~flG~~~~~~~d~~~ksvvRK~-~~~EkVGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~ 518 (892)
+.|.+-|++ ...|. ..++-.+...++++.+.+ .+.+ ....+-|++.. ..+|+ ++++.|=|...
T Consensus 120 ~lV~~gD~l-~~~d~--~~ll~~h~~~~~~~tl~~-~~~~~~~~~~yG~v~~--d~~g~------V~~~~eKp~~~---- 183 (380)
T PRK05293 120 VLILSGDHI-YKMDY--DKMLDYHKEKEADVTIAV-IEVPWEEASRFGIMNT--DENMR------IVEFEEKPKNP---- 183 (380)
T ss_pred EEEecCCEE-EcCCH--HHHHHHHHhcCCCEEEEE-EEcchhhccccCEEEE--CCCCc------EEEEEeCCCCC----
Confidence 889999984 34443 355666666666654443 2222 12335677753 13444 44454433211
Q ss_pred CCCCCCccccCccceeeeEEeHHHHHhhhc
Q 002690 519 PFSSNGLQADFPANTNILYVDLASAELVGS 548 (892)
Q Consensus 519 ~~~dg~l~S~F~aNInn~~fsL~fL~~vl~ 548 (892)
. . ...|+..++|+-+.+.+.+.
T Consensus 184 ---~-~----~~~~~Giyi~~~~~l~~~l~ 205 (380)
T PRK05293 184 ---K-S----NLASMGIYIFNWKRLKEYLI 205 (380)
T ss_pred ---C-c----ceeeeEEEEEcHHHHHHHHH
Confidence 0 0 12499999999888877654
No 14
>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=97.62 E-value=0.0037 Score=71.25 Aligned_cols=206 Identities=14% Similarity=0.117 Sum_probs=117.9
Q ss_pred ccCcEEEEEecCCccccCC---CCCCCCCceeeccccCCCCC-cchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCC
Q 002690 285 GLPELGEIYPLGGSADRLG---LVDHETGECLPAAMLPYCGR-TLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAK 360 (892)
Q Consensus 285 ~L~kvAvVlLAGGlGTRLG---~~~PKgg~~lpV~l~p~sgk-TlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~~ 360 (892)
+..++..|+||||.||||. ...||. ++|+ .|+ +++++.++.+... | .--++|.|..
T Consensus 2 ~~~~~~avILAaG~GtRl~PLT~~~PK~--llPv-----~gk~plI~~~L~~l~~~--------G---i~~i~iv~~~-- 61 (407)
T PRK00844 2 AMPKVLAIVLAGGEGKRLMPLTADRAKP--AVPF-----GGSYRLIDFVLSNLVNS--------G---YLRIYVLTQY-- 61 (407)
T ss_pred CCCceEEEEECCCCCCccchhhcCCccc--ceee-----CCcceEhHHHHHHHHHC--------C---CCEEEEEecc--
Confidence 3457889999999999999 899999 9999 577 8999998887653 3 2345778876
Q ss_pred CchHHHHHHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCcccccCCCcHHHHHHHhcCchHHHHHcCceEE
Q 002690 361 NNHERITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGA 440 (892)
Q Consensus 361 ~Th~~T~~fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dGkilL~~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~~Gikyi 440 (892)
..+...++|.+. +++....+.++.. +|.-. . .-...|-|-|+-.... ++.+....-+++
T Consensus 62 -~~~~i~~~~~~~--~~~~~~~~~~~~~--~~~~~-~----------~~~~~~lGta~al~~a-----~~~i~~~~~~~~ 120 (407)
T PRK00844 62 -KSHSLDRHISQT--WRLSGLLGNYITP--VPAQQ-R----------LGKRWYLGSADAIYQS-----LNLIEDEDPDYV 120 (407)
T ss_pred -CHHHHHHHHHhC--cCccccCCCeEEE--CCccc-C----------CCCCcccCCHHHHHHH-----HHHHHhcCCCEE
Confidence 788899999742 2222112211110 00000 0 0012245666543322 223434344788
Q ss_pred EEEeCCCCccccChhHHHHHHhhhhcCCceeEEEeeecC-CCCcCceEEEEeecCCCccccceEEEEecccCccCCCCCC
Q 002690 441 TVRQVSNVVAATDLTLLALAGIGLHHGKKLGFASCKRSS-GATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGP 519 (892)
Q Consensus 441 ~V~qVDN~La~vDP~il~flG~~~~~~~d~~~ksvvRK~-~~~EkVGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~~ 519 (892)
.|.+-|++ ...|.. .++-++...++++.+.+ .+.+ .....-|++.. ..+|+ +.++.|=|... ....
T Consensus 121 lv~~gD~v-~~~dl~--~l~~~h~~~~~~~ti~~-~~~~~~~~~~~Gvv~~--d~~g~------v~~~~eKp~~~-~~~~ 187 (407)
T PRK00844 121 VVFGADHV-YRMDPR--QMVDFHIESGAGVTVAA-IRVPREEASAFGVIEV--DPDGR------IRGFLEKPADP-PGLP 187 (407)
T ss_pred EEecCCEE-EcCCHH--HHHHHHHhcCCcEEEEE-EecchHHcccCCEEEE--CCCCC------EEEEEECCCCc-cccc
Confidence 88899984 334443 55677666776665553 2221 12234677753 13454 33444433221 0000
Q ss_pred CCCCCccccCccceeeeEEeHHHHHhhhc
Q 002690 520 FSSNGLQADFPANTNILYVDLASAELVGS 548 (892)
Q Consensus 520 ~~dg~l~S~F~aNInn~~fsL~fL~~vl~ 548 (892)
...+ ..-.|+..+.|+-+.|.+.++
T Consensus 188 ~~~~----~~~~~~Giyi~~~~~l~~~l~ 212 (407)
T PRK00844 188 DDPD----EALASMGNYVFTTDALVDALR 212 (407)
T ss_pred CCCC----CcEEEeEEEEEeHHHHHHHHH
Confidence 0101 123599999999998877664
No 15
>cd06915 NTP_transferase_WcbM_like WcbM_like is a subfamily of nucleotidyl transferases. WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars.
Probab=97.58 E-value=0.0037 Score=63.54 Aligned_cols=177 Identities=21% Similarity=0.164 Sum_probs=102.7
Q ss_pred EEEecCCccccCCC---CCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHH
Q 002690 291 EIYPLGGSADRLGL---VDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (892)
Q Consensus 291 vVlLAGGlGTRLG~---~~PKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~~~Th~~T~ 367 (892)
.|+||||.|+||+- ..||. ++|+ .|+++++..++.+... | .-.++|.|+. ..+.+.
T Consensus 1 aiIlaaG~g~R~~~~t~~~pK~--ll~i-----~g~pli~~~l~~l~~~--------g---~~~v~vv~~~---~~~~i~ 59 (223)
T cd06915 1 AVILAGGLGTRLRSVVKDLPKP--LAPV-----AGRPFLEYLLEYLARQ--------G---ISRIVLSVGY---LAEQIE 59 (223)
T ss_pred CEEecCCcccccCcccCCCCcc--ccEE-----CCcchHHHHHHHHHHC--------C---CCEEEEEccc---CHHHHH
Confidence 37899999999974 57999 9998 6899999998887642 3 1246677765 567788
Q ss_pred HHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCcccccCCCcH-HHHHHHhcCchHHHHHcCceEEEEEeCC
Q 002690 368 SLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGA-IWKLAHDKGIFKWFHDNGRKGATVRQVS 446 (892)
Q Consensus 368 ~fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dGkilL~~~~~i~~~P~GHGd-Iy~aL~~sGlLd~l~~~Gikyi~V~qVD 446 (892)
+++.....+|. .+.+ .. . ..+-|.++ ++.++. .+ +-+++.+.+.|
T Consensus 60 ~~~~~~~~~~~---~~~~--------~~-~-------------~~~~G~~~~l~~a~~------~~---~~~~~lv~~~D 105 (223)
T cd06915 60 EYFGDGYRGGI---RIYY--------VI-E-------------PEPLGTGGAIKNALP------KL---PEDQFLVLNGD 105 (223)
T ss_pred HHHcCccccCc---eEEE--------EE-C-------------CCCCcchHHHHHHHh------hc---CCCCEEEEECC
Confidence 88875332332 1211 11 0 12455554 444442 12 23678888899
Q ss_pred CCccccChhHHHHHHhhhhcCCceeEEEeeecCCCCcCceEEEEeecCCCccccceEEEEecccCccCCCCCCCCCCCcc
Q 002690 447 NVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQ 526 (892)
Q Consensus 447 N~La~vDP~il~flG~~~~~~~d~~~ksvvRK~~~~EkVGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~~~~dg~l~ 526 (892)
++. ..| +..++-.+...+.++.+.+ .+.... ..-|++.. ..+|+ ++++.+=+... .
T Consensus 106 ~~~-~~~--~~~~l~~~~~~~~~~~~~~-~~~~~~-~~~~~v~~--d~~~~------v~~~~ek~~~~--------~--- 161 (223)
T cd06915 106 TYF-DVD--LLALLAALRASGADATMAL-RRVPDA-SRYGNVTV--DGDGR------VIAFVEKGPGA--------A--- 161 (223)
T ss_pred ccc-CCC--HHHHHHHHHhCCCcEEEEE-EECCCC-CcceeEEE--CCCCe------EEEEEeCCCCC--------C---
Confidence 865 333 3345555555566665553 443222 33455432 13444 44454422110 0
Q ss_pred ccCccceeeeEEeHHHHHhhh
Q 002690 527 ADFPANTNILYVDLASAELVG 547 (892)
Q Consensus 527 S~F~aNInn~~fsL~fL~~vl 547 (892)
.+..|++..+|+-++++.+.
T Consensus 162 -~~~~~~Giy~~~~~~l~~~~ 181 (223)
T cd06915 162 -PGLINGGVYLLRKEILAEIP 181 (223)
T ss_pred -CCcEEEEEEEECHHHHhhCC
Confidence 13348999999999887643
No 16
>cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=97.52 E-value=0.0033 Score=65.12 Aligned_cols=124 Identities=16% Similarity=0.166 Sum_probs=80.8
Q ss_pred EEEecCCccccCC---CCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHH
Q 002690 291 EIYPLGGSADRLG---LVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (892)
Q Consensus 291 vVlLAGGlGTRLG---~~~PKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~~~Th~~T~ 367 (892)
.|+||||.||||+ ...||. ++|+ .|++++++.++.+.+. | .--++|.|.. ..+.+.
T Consensus 3 aiIla~G~g~Rl~plt~~~pK~--llpi-----~g~piI~~~l~~l~~~--------G---i~~I~iv~~~---~~~~i~ 61 (217)
T cd04197 3 AVVLADSFNRRFRPLTKEKPRC--LLPL-----ANVPLIDYTLEFLALN--------G---VEEVFVFCCS---HSDQIK 61 (217)
T ss_pred EEEEcCCCcccccccccCCCce--eeEE-----CCEehHHHHHHHHHHC--------C---CCeEEEEeCC---CHHHHH
Confidence 5889999999998 588999 9998 6889999988887652 4 2346778876 678899
Q ss_pred HHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCcccccCCCcHHHHHHHhcCchHHHHHcCceEEEEEeCCC
Q 002690 368 SLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSN 447 (892)
Q Consensus 368 ~fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dGkilL~~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~~Gikyi~V~qVDN 447 (892)
++|++..++++... ...+..+. . ..+.|-|+..+.+...+.+ .+.+.+.+-|+
T Consensus 62 ~~l~~~~~~~~~~~------~~~i~~~~-~-------------~~~~~~~~al~~~~~~~~~-------~~~flv~~gD~ 114 (217)
T cd04197 62 EYIEKSKWSKPKSS------LMIVIIIM-S-------------EDCRSLGDALRDLDAKGLI-------RGDFILVSGDV 114 (217)
T ss_pred HHHhhccccccccC------cceEEEEe-C-------------CCcCccchHHHHHhhcccc-------CCCEEEEeCCe
Confidence 99998766654321 00111111 1 1234556666665544433 24566788887
Q ss_pred CccccChhHHHHHHhhhh
Q 002690 448 VVAATDLTLLALAGIGLH 465 (892)
Q Consensus 448 ~La~vDP~il~flG~~~~ 465 (892)
+. ..|.. .++-++..
T Consensus 115 i~-~~dl~--~~l~~h~~ 129 (217)
T cd04197 115 VS-NIDLK--EILEEHKE 129 (217)
T ss_pred ee-ccCHH--HHHHHHHH
Confidence 54 34543 56677665
No 17
>cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU. The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively.
Probab=97.51 E-value=0.0035 Score=64.53 Aligned_cols=181 Identities=14% Similarity=0.113 Sum_probs=103.5
Q ss_pred EEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHHHHH
Q 002690 291 EIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLC 370 (892)
Q Consensus 291 vVlLAGGlGTRLG~~~PKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~~~Th~~T~~fl 370 (892)
.|+||||.||||+...||. ++|+ .|+++++..++.+... | .-.++|.|+. .++...+++
T Consensus 1 aiIlaaG~g~R~~~~~pK~--l~~v-----~gkpli~~~i~~l~~~--------~---i~~i~iv~~~---~~~~i~~~~ 59 (229)
T cd02540 1 AVILAAGKGTRMKSDLPKV--LHPL-----AGKPMLEHVLDAARAL--------G---PDRIVVVVGH---GAEQVKKAL 59 (229)
T ss_pred CEEEeCCCCccCCCCCChh--ccee-----CCccHHHHHHHHHHhC--------C---CCeEEEEECC---CHHHHHHHh
Confidence 3789999999999878999 9998 6899999888877553 2 2356777776 467777776
Q ss_pred HHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCcccccCCCcH-HHHHHHhcCchHHHHHcCceEEEEEeCCCCc
Q 002690 371 ERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGA-IWKLAHDKGIFKWFHDNGRKGATVRQVSNVV 449 (892)
Q Consensus 371 e~n~yFGl~~~qV~~F~Q~~vP~l~~~dGkilL~~~~~i~~~P~GHGd-Iy~aL~~sGlLd~l~~~Gikyi~V~qVDN~L 449 (892)
.+ + .+.++.|. .+.|.++ ++.++. .+ +.+.+++.+.+.|+++
T Consensus 60 ~~---~-----~~~~~~~~----------------------~~~g~~~ai~~a~~------~~-~~~~~~vli~~~D~p~ 102 (229)
T cd02540 60 AN---P-----NVEFVLQE----------------------EQLGTGHAVKQALP------AL-KDFEGDVLVLYGDVPL 102 (229)
T ss_pred CC---C-----CcEEEECC----------------------CCCCCHHHHHHHHH------hh-ccCCCeEEEEeCCccc
Confidence 64 2 23333331 1234343 443332 22 2246789999999986
Q ss_pred cccChhHHHHHHhhhhcCCceeEEEeeecCCCCcCceEEEEeecCCCccccceEEEEecccCccCCCCCCCCCCCccccC
Q 002690 450 AATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQADF 529 (892)
Q Consensus 450 a~vDP~il~flG~~~~~~~d~~~ksvvRK~~~~EkVGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~~~~dg~l~S~F 529 (892)
...+ .+-.++-.....++++.+.+ .+..++ ..-|++.. ..+|+ ++++.+=+... . .+.. .+
T Consensus 103 ~~~~-~i~~l~~~~~~~~~~~~~~~-~~~~~p-~~~~~~~~--~~~~~------v~~~~ek~~~~-~------~~~~-~~ 163 (229)
T cd02540 103 ITPE-TLQRLLEAHREAGADVTVLT-AELEDP-TGYGRIIR--DGNGK------VLRIVEEKDAT-E------EEKA-IR 163 (229)
T ss_pred cCHH-HHHHHHHHHHhcCCcEEEEE-EEcCCC-CCccEEEE--cCCCC------EEEEEECCCCC-h------HHHh-hc
Confidence 5432 12233444444445555443 333333 34555543 13455 33333322111 0 0000 12
Q ss_pred ccceeeeEEeHHHHHhhhc
Q 002690 530 PANTNILYVDLASAELVGS 548 (892)
Q Consensus 530 ~aNInn~~fsL~fL~~vl~ 548 (892)
..|++.++|+-+.+.+.++
T Consensus 164 ~~~~giy~~~~~~~~~~l~ 182 (229)
T cd02540 164 EVNAGIYAFDAEFLFEALP 182 (229)
T ss_pred eEEeEEEEEEHHHHHHHHH
Confidence 3489999999887776664
No 18
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=97.50 E-value=0.0033 Score=73.04 Aligned_cols=186 Identities=13% Similarity=0.135 Sum_probs=109.0
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHH
Q 002690 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (892)
Q Consensus 288 kvAvVlLAGGlGTRLG~~~PKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~~~Th~~T~ 367 (892)
.++.|+||||.||||+...||. ++|+ .|+++++..++++.+. | .-.++|.++. ..+.+.
T Consensus 4 ~~~avILAaG~gtRm~~~~pK~--llpi-----~gkpli~~~l~~l~~~--------g---~~~iivvv~~---~~~~i~ 62 (482)
T PRK14352 4 PTAVIVLAAGAGTRMRSDTPKV--LHTL-----AGRSMLGHVLHAAAGL--------A---PQHLVVVVGH---DRERVA 62 (482)
T ss_pred CceEEEEcCCCCCcCCCCCCce--ecee-----CCccHHHHHHHHHHhc--------C---CCcEEEEECC---CHHHHH
Confidence 5678999999999999888999 9998 6899999999988653 2 3467777876 456677
Q ss_pred HHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCcccccCCCcH-HHHHHHhcCchHHHHHcCceEEEEEeCC
Q 002690 368 SLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGA-IWKLAHDKGIFKWFHDNGRKGATVRQVS 446 (892)
Q Consensus 368 ~fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dGkilL~~~~~i~~~P~GHGd-Iy~aL~~sGlLd~l~~~Gikyi~V~qVD 446 (892)
++++... ..+.+..| ..|.|-|+ ++.++. .+.+..-++++|...|
T Consensus 63 ~~~~~~~------~~~~~~~~----------------------~~~~Gt~~si~~al~------~l~~~~~~~vlV~~gD 108 (482)
T PRK14352 63 PAVAELA------PEVDIAVQ----------------------DEQPGTGHAVQCALE------ALPADFDGTVVVTAGD 108 (482)
T ss_pred HHhhccC------CccEEEeC----------------------CCCCCcHHHHHHHHH------HhccCCCCeEEEEeCC
Confidence 7775421 01222222 12334333 555553 2222234689999999
Q ss_pred CCccccChhHHHHHHhhhhcCCceeEEEeeecCCCCcCceEEEEeecCCCccccceEEEEecccCccCCCCCCCCCCCcc
Q 002690 447 NVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQ 526 (892)
Q Consensus 447 N~La~vDP~il~flG~~~~~~~d~~~ksvvRK~~~~EkVGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~~~~dg~l~ 526 (892)
+++...+ .+-.++-.+...+..+.+.. .+ .....+-|++.. ..+|+ ...++|..+.++.. ..
T Consensus 109 ~P~~~~~-~l~~li~~~~~~~~~~~v~~-~~-~~~p~~yg~~~~--~~~g~---V~~~~EKp~~~~~~----------~~ 170 (482)
T PRK14352 109 VPLLDGE-TLADLVATHTAEGNAVTVLT-TT-LDDPTGYGRILR--DQDGE---VTAIVEQKDATPSQ----------RA 170 (482)
T ss_pred eeccCHH-HHHHHHHHHHhcCCeEEEEE-ee-cCCCCCCCEEEE--CCCCC---EEEEEECCCCCHHH----------hh
Confidence 9865431 12233444444444433332 22 222334566543 24555 12444543322111 10
Q ss_pred ccCc-cceeeeEEeHHHHHhhhc
Q 002690 527 ADFP-ANTNILYVDLASAELVGS 548 (892)
Q Consensus 527 S~F~-aNInn~~fsL~fL~~vl~ 548 (892)
.. .|+..++|+-+.|.+.+.
T Consensus 171 --~~~~~~Giy~f~~~~l~~~~~ 191 (482)
T PRK14352 171 --IREVNSGVYAFDAAVLRSALA 191 (482)
T ss_pred --cceEEEEEEEEEHHHHHHHHH
Confidence 12 489999999998877664
No 19
>cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars. Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides.
Probab=97.49 E-value=0.0061 Score=61.87 Aligned_cols=177 Identities=20% Similarity=0.226 Sum_probs=106.0
Q ss_pred EEecCCccccCC---CCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHHH
Q 002690 292 IYPLGGSADRLG---LVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITS 368 (892)
Q Consensus 292 VlLAGGlGTRLG---~~~PKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~~~Th~~T~~ 368 (892)
|+||||.||||+ ...||. ++|+ .|+++++..++.+... | .-.++|.|.. ..+.+.+
T Consensus 2 iIlaaG~g~R~~~~t~~~pK~--ll~v-----~g~pli~~~l~~l~~~--------g---~~~i~vv~~~---~~~~i~~ 60 (217)
T cd04181 2 VILAAGKGTRLRPLTDTRPKP--LLPI-----AGKPILEYIIERLARA--------G---IDEIILVVGY---LGEQIEE 60 (217)
T ss_pred EEecCCccccccccccCCCcc--ccEE-----CCeeHHHHHHHHHHHC--------C---CCEEEEEecc---CHHHHHH
Confidence 789999999998 468999 9998 6899999999887653 2 2345777776 4567777
Q ss_pred HHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCcccccCCCcHHHHHHHhcCchHHHHHcCceEEEEEeCCCC
Q 002690 369 LCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNV 448 (892)
Q Consensus 369 fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dGkilL~~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~~Gikyi~V~qVDN~ 448 (892)
++.+...+|+ .|.+..|. .|.|.|+-...... .+ .-+++.|...|++
T Consensus 61 ~~~~~~~~~~---~i~~~~~~----------------------~~~g~~~al~~~~~-----~~---~~~~~lv~~~D~~ 107 (217)
T cd04181 61 YFGDGSKFGV---NIEYVVQE----------------------EPLGTAGAVRNAED-----FL---GDDDFLVVNGDVL 107 (217)
T ss_pred HHcChhhcCc---eEEEEeCC----------------------CCCccHHHHHHhhh-----hc---CCCCEEEEECCee
Confidence 8776543442 23222111 23555443332221 22 4578889999985
Q ss_pred ccccChhHHHHHHhhhhcCCceeEEEeeecCCCCcCceEEEEeecCCCccccceEEEEecccCccCCCCCCCCCCCcccc
Q 002690 449 VAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQAD 528 (892)
Q Consensus 449 La~vDP~il~flG~~~~~~~d~~~ksvvRK~~~~EkVGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~~~~dg~l~S~ 528 (892)
. ..|. ..++-.+...++++.+.+ .+.. ....-|++.. ..+|+ ++++.|=++.. . .
T Consensus 108 ~-~~~~--~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~v~~--d~~~~------v~~~~ek~~~~-------~-----~ 162 (217)
T cd04181 108 T-DLDL--SELLRFHREKGADATIAV-KEVE-DPSRYGVVEL--DDDGR------VTRFVEKPTLP-------E-----S 162 (217)
T ss_pred c-CcCH--HHHHHHHHhcCCCEEEEE-EEcC-CCCcceEEEE--cCCCc------EEEEEECCCCC-------C-----C
Confidence 3 3342 345666666677766554 3322 3445677653 13344 45555433221 0 1
Q ss_pred CccceeeeEEeHHHHHhhhc
Q 002690 529 FPANTNILYVDLASAELVGS 548 (892)
Q Consensus 529 F~aNInn~~fsL~fL~~vl~ 548 (892)
...|+..++|+-+.+ +.+.
T Consensus 163 ~~~~~Giy~~~~~~~-~~l~ 181 (217)
T cd04181 163 NLANAGIYIFEPEIL-DYIP 181 (217)
T ss_pred CEEEEEEEEECHHHH-Hhhh
Confidence 335899999998776 4443
No 20
>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit. This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.
Probab=97.45 E-value=0.002 Score=71.97 Aligned_cols=193 Identities=16% Similarity=0.105 Sum_probs=111.3
Q ss_pred cEEEEEecCCccccCCC---CCCCCCceeeccccCCCCC-cchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCch
Q 002690 288 ELGEIYPLGGSADRLGL---VDHETGECLPAAMLPYCGR-TLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNH 363 (892)
Q Consensus 288 kvAvVlLAGGlGTRLG~---~~PKgg~~lpV~l~p~sgk-TlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~~~Th 363 (892)
++..|+||||.||||.- +.||. |+|| .|| ++++++++.+.+. | .--++|.+.. .-.
T Consensus 2 ~~~avila~g~gtRL~PLT~~~PKp--LlpV-----~gk~PlIe~~l~~L~~~--------G---i~~I~iv~~~--~~~ 61 (369)
T TIGR02092 2 KMSAIINLTESSKNLSPLTKVRPLA--SLPF-----GGRYRLIDFPLSNMVNA--------G---IRNVFIFFKN--KER 61 (369)
T ss_pred cEEEEEECCCCCccccccccCCccc--cccc-----CCeeeEEEEEhhhhhcc--------C---CCEEEEEeCC--CcH
Confidence 46779999999999973 88999 9998 688 8999999888663 4 2356777777 233
Q ss_pred HHHHHHHHHhCCCCCCCCce---EEEecCCeeeEecCCCcccccCCCCcccccCCCcHHHHHHHhcCchHHHHHcCceEE
Q 002690 364 ERITSLCERLRWFGRGQSSF---QLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGA 440 (892)
Q Consensus 364 ~~T~~fle~n~yFGl~~~qV---~~F~Q~~vP~l~~~dGkilL~~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~~Gikyi 440 (892)
+..+++|.+...||++..+. .++.|+ ..|-|-|+.+...... +.+...+-+.+
T Consensus 62 ~~I~~~l~~~~~~~~~~~~~~~~~~~~~e---------------------~~~l~tg~~~a~~~a~---~~l~~~~~~~~ 117 (369)
T TIGR02092 62 QSLFDHLGSGREWDLHRKRDGLFVFPYND---------------------RDDLSEGGKRYFSQNL---EFLKRSTSEYT 117 (369)
T ss_pred HHHHHHHhCCCCCCcccccCcEEEEeccC---------------------CCCcccChHHHHHHHH---HHHHhCCCCEE
Confidence 48999998876777653221 111121 1233334444332221 22222234689
Q ss_pred EEEeCCCCccccChhHHHHHHhhhhcCCceeEEEeeecC--CCCcCceEEEEeecCCCccccceEEEEecccCccCCCCC
Q 002690 441 TVRQVSNVVAATDLTLLALAGIGLHHGKKLGFASCKRSS--GATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRG 518 (892)
Q Consensus 441 ~V~qVDN~La~vDP~il~flG~~~~~~~d~~~ksvvRK~--~~~EkVGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~ 518 (892)
.|.+-|+ +...|. ..++-++.+.++++.+.+ .+.. .+..-.|++.. ..+|+ +. ++.+-++.
T Consensus 118 lvlnGD~-l~~~dl--~~ll~~h~~~~a~~tl~~-~~v~~~~~~~~g~vv~~--~~~g~----v~--~~~~~~~~----- 180 (369)
T TIGR02092 118 VVLNSHM-VCNIDL--KAVLKYHEETGKDITVVY-KKVKPADASEYDTILRF--DESGK----VK--SIGQNLNP----- 180 (369)
T ss_pred EEECCCE-EEecCH--HHHHHHHHHcCCCEEEEE-EecCHHHccccCcEEEE--cCCCC----EE--eccccCCC-----
Confidence 9999997 444543 355666666677665553 3322 22323355543 13444 32 22111110
Q ss_pred CCCCCCccccCccceeeeEEeHHHHHhhhc
Q 002690 519 PFSSNGLQADFPANTNILYVDLASAELVGS 548 (892)
Q Consensus 519 ~~~dg~l~S~F~aNInn~~fsL~fL~~vl~ 548 (892)
+.. ...|+..++|+-+.+.+.++
T Consensus 181 ---~~~----~~~~~Giyi~~~~~l~~~l~ 203 (369)
T TIGR02092 181 ---EEE----ENISLDIYIVSTDLLIELLY 203 (369)
T ss_pred ---CCc----ceeeeeEEEEEHHHHHHHHH
Confidence 001 11378899999887766654
No 21
>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=97.45 E-value=0.0055 Score=70.53 Aligned_cols=209 Identities=15% Similarity=0.120 Sum_probs=116.3
Q ss_pred cEEEEEecCCccccCC---CCCCCCCceeeccccCCCCC-cchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCch
Q 002690 288 ELGEIYPLGGSADRLG---LVDHETGECLPAAMLPYCGR-TLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNH 363 (892)
Q Consensus 288 kvAvVlLAGGlGTRLG---~~~PKgg~~lpV~l~p~sgk-TlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~~~Th 363 (892)
++..|+||||.||||. ...||- ++|+ .|+ +++++.++++... | .-.++|.|+. ..
T Consensus 3 ~~~AVILAaG~GtRL~PLT~~~PK~--Llpi-----~gk~plI~~~L~~l~~~--------G---i~~vivv~~~---~~ 61 (429)
T PRK02862 3 RVLAIILGGGAGTRLYPLTKLRAKP--AVPL-----AGKYRLIDIPISNCINS--------G---INKIYVLTQF---NS 61 (429)
T ss_pred cEEEEEECCCCCCcchhhhcCCcce--eeEE-----CCeeEEeHHHHHHHHHC--------C---CCEEEEEecC---CH
Confidence 6788999999999998 489999 9998 578 9999999877552 4 2357888887 78
Q ss_pred HHHHHHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCcccccCCCcHHHHHHHhcCchHHHHHcCceEEEEE
Q 002690 364 ERITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVR 443 (892)
Q Consensus 364 ~~T~~fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dGkilL~~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~~Gikyi~V~ 443 (892)
+...++|.+..+|+.....+ +..+... ....-...+-|.|+-..... +.+....-+++.|.
T Consensus 62 ~~i~~~l~~~~~~~~~~~g~-------~~i~~~~-------~~~~~~~~~lGTa~al~~a~-----~~l~~~~~~~~lVl 122 (429)
T PRK02862 62 ASLNRHISQTYNFDGFSGGF-------VEVLAAQ-------QTPENPSWFQGTADAVRKYL-----WHFQEWDVDEYLIL 122 (429)
T ss_pred HHHHHHHhcCcCccccCCCE-------EEEeCCc-------ccCCCCccccCcHHHHHHHH-----HHHHhcCCCEEEEe
Confidence 88999998643332111000 1111000 00000011247666443322 23333334678999
Q ss_pred eCCCCccccChhHHHHHHhhhhcCCceeEEEeeecCCC-CcCceEEEEeecCCCccccceEEEEecccCccCCCC---CC
Q 002690 444 QVSNVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGA-TEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITR---GP 519 (892)
Q Consensus 444 qVDN~La~vDP~il~flG~~~~~~~d~~~ksvvRK~~~-~EkVGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~---~~ 519 (892)
+-|++ ...|.. .++-++...++++.+.+ .+...+ ...-|++.. ..+|+ ++++.|-|.....+ .+
T Consensus 123 ~gD~l-~~~dl~--~ll~~h~~~~a~~tl~~-~~~~~~~~~~yG~i~~--d~~g~------V~~~~Ekp~~~~~~~~~~~ 190 (429)
T PRK02862 123 SGDQL-YRMDYR--LFVQHHRETGADITLAV-LPVDEKDASGFGLMKT--DDDGR------ITEFSEKPKGDELKAMAVD 190 (429)
T ss_pred cCCEE-EeCCHH--HHHHHHHHcCCCEEEEE-EecChhhcccceEEEE--CCCCc------EEEEEECCCccccchhccc
Confidence 99984 445543 55666666676665553 222211 224677754 13455 33444433321000 00
Q ss_pred CC----CC-Cc-cccCccceeeeEEeHHHHHhhhc
Q 002690 520 FS----SN-GL-QADFPANTNILYVDLASAELVGS 548 (892)
Q Consensus 520 ~~----dg-~l-~S~F~aNInn~~fsL~fL~~vl~ 548 (892)
.+ +. .. ...+-.|+..++|+-+.|.+.++
T Consensus 191 ~s~~~~~~~~~~~~~~~~n~Giyi~~~~vl~~~l~ 225 (429)
T PRK02862 191 TSRLGLSPEEAKGKPYLASMGIYVFSRDVLFDLLN 225 (429)
T ss_pred ccccccccccCCCCceEEEEEEEEEcHHHHHHHHH
Confidence 00 00 00 00123489999999999987765
No 22
>cd04189 G1P_TT_long G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase. This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in
Probab=97.44 E-value=0.0061 Score=63.25 Aligned_cols=175 Identities=17% Similarity=0.198 Sum_probs=101.3
Q ss_pred EEEEecCCccccCC---CCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHH
Q 002690 290 GEIYPLGGSADRLG---LVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERI 366 (892)
Q Consensus 290 AvVlLAGGlGTRLG---~~~PKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~~~Th~~T 366 (892)
..|+||||.||||+ ...||. ++|+ .|+++++..++.+... | .-.++|.|+. ..+..
T Consensus 2 ~avIlAaG~g~Rl~plt~~~pK~--l~~i-----~g~~li~~~l~~l~~~--------~---~~~i~vv~~~---~~~~~ 60 (236)
T cd04189 2 KGLILAGGKGTRLRPLTYTRPKQ--LIPV-----AGKPIIQYAIEDLREA--------G---IEDIGIVVGP---TGEEI 60 (236)
T ss_pred eEEEECCCccccccccccCCCce--eeEE-----CCcchHHHHHHHHHHC--------C---CCEEEEEcCC---CHHHH
Confidence 46889999999997 578999 9998 6899999988887542 3 2256788887 77888
Q ss_pred HHHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCcccccCCCcH-HHHHHHhcCchHHHHHcCceEEEEEeC
Q 002690 367 TSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGA-IWKLAHDKGIFKWFHDNGRKGATVRQV 445 (892)
Q Consensus 367 ~~fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dGkilL~~~~~i~~~P~GHGd-Iy~aL~~sGlLd~l~~~Gikyi~V~qV 445 (892)
.+++++...+|+ ++.+..|+ .|-|.|+ ++.++. .+ . +-.++ +.+.
T Consensus 61 ~~~~~~~~~~~~---~i~~~~~~----------------------~~~g~~~sl~~a~~------~i-~-~~~~l-i~~~ 106 (236)
T cd04189 61 KEALGDGSRFGV---RITYILQE----------------------EPLGLAHAVLAARD------FL-G-DEPFV-VYLG 106 (236)
T ss_pred HHHhcchhhcCC---eEEEEECC----------------------CCCChHHHHHHHHH------hc-C-CCCEE-EEEC
Confidence 888887555554 23222221 2345444 333221 11 1 22444 4556
Q ss_pred CCCccccChhHHHHHHhhhhcCCceeEEEeeecCCCCcCceEEEEeecCCCccccceEEEEecccCccCCCCCCCCCCCc
Q 002690 446 SNVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGL 525 (892)
Q Consensus 446 DN~La~vDP~il~flG~~~~~~~d~~~ksvvRK~~~~EkVGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~~~~dg~l 525 (892)
|.+. ..| +..++-.+...+.++.+.+ .+...+ ..-|++.. .+|+ ++++.|=|... .
T Consensus 107 D~~~-~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~g~~~~---d~~~------v~~~~ek~~~~-------~--- 162 (236)
T cd04189 107 DNLI-QEG--ISPLVRDFLEEDADASILL-AEVEDP-RRFGVAVV---DDGR------IVRLVEKPKEP-------P--- 162 (236)
T ss_pred Ceec-CcC--HHHHHHHHHhcCCceEEEE-EECCCc-ccceEEEE---cCCe------EEEEEECCCCC-------C---
Confidence 7654 333 3345555566666665553 332222 34566643 2333 34444322211 0
Q ss_pred cccCccceeeeEEeHHHHHh
Q 002690 526 QADFPANTNILYVDLASAEL 545 (892)
Q Consensus 526 ~S~F~aNInn~~fsL~fL~~ 545 (892)
....|++.++|+-+.++.
T Consensus 163 --~~~~~~Giy~~~~~~~~~ 180 (236)
T cd04189 163 --SNLALVGVYAFTPAIFDA 180 (236)
T ss_pred --CCEEEEEEEEeCHHHHHH
Confidence 022489999999766643
No 23
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=97.44 E-value=0.0043 Score=70.92 Aligned_cols=185 Identities=13% Similarity=0.086 Sum_probs=104.1
Q ss_pred EEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHHH
Q 002690 289 LGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITS 368 (892)
Q Consensus 289 vAvVlLAGGlGTRLG~~~PKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~~~Th~~T~~ 368 (892)
++.|+||||.|+|||...||. ++|+ .|+++++..++.+.+. | ....+|.+.. ..+...+
T Consensus 2 ~~~iIlAaG~gsR~~~~~pK~--ll~v-----~gkpli~~~l~~l~~~--------g---~~~iivvv~~---~~~~i~~ 60 (450)
T PRK14360 2 LAVAILAAGKGTRMKSSLPKV--LHPL-----GGKSLVERVLDSCEEL--------K---PDRRLVIVGH---QAEEVEQ 60 (450)
T ss_pred ceEEEEeCCCCccCCCCCChh--cCEE-----CChhHHHHHHHHHHhC--------C---CCeEEEEECC---CHHHHHH
Confidence 578999999999999888999 9998 6899999998887653 2 2355666665 3455666
Q ss_pred HHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCcccccCCCcHHHHHHHhcCchHHHHHcCceEEEEEeCCCC
Q 002690 369 LCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNV 448 (892)
Q Consensus 369 fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dGkilL~~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~~Gikyi~V~qVDN~ 448 (892)
+++++. .+.+..|. .+.|.++-+.+.. +.+. ..-++++|...|.+
T Consensus 61 ~~~~~~-------~i~~v~~~----------------------~~~G~~~sv~~~~-----~~l~-~~~~~vlV~~~D~P 105 (450)
T PRK14360 61 SLAHLP-------GLEFVEQQ----------------------PQLGTGHAVQQLL-----PVLK-GFEGDLLVLNGDVP 105 (450)
T ss_pred HhcccC-------CeEEEEeC----------------------CcCCcHHHHHHHH-----HHhh-ccCCcEEEEeCCcc
Confidence 665321 23222221 1345444332222 2222 12246888999998
Q ss_pred ccccChhHHHHHHhhhhcCCceeEEEeeecCCCCcCceEEEEeecCCCccccceEEEEecccCccCCCCCCCCCCCcccc
Q 002690 449 VAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQAD 528 (892)
Q Consensus 449 La~vDP~il~flG~~~~~~~d~~~ksvvRK~~~~EkVGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~~~~dg~l~S~ 528 (892)
+...+ .+-.++-.+...++++.+.. .+...+. .-|++.. ..+|+ ....+|...+.+.. ..+
T Consensus 106 ~i~~~-~l~~ll~~~~~~~~~~~~~~-~~~~~~~-~~g~~~~--d~~g~---v~~~~ek~~~~~~~-------~~~---- 166 (450)
T PRK14360 106 LLRPE-TLEALLNTHRSSNADVTLLT-ARLPNPK-GYGRVFC--DGNNL---VEQIVEDRDCTPAQ-------RQN---- 166 (450)
T ss_pred ccCHH-HHHHHHHHHHhcCCcEEEEE-EecCCCC-CccEEEE--CCCCC---EEEEEECCCCChhH-------hcC----
Confidence 75531 12233444445555554432 3333332 3455532 24555 12344432221111 001
Q ss_pred CccceeeeEEeHHHHHhhhc
Q 002690 529 FPANTNILYVDLASAELVGS 548 (892)
Q Consensus 529 F~aNInn~~fsL~fL~~vl~ 548 (892)
...|+..++|+-+.+.+.++
T Consensus 167 ~~~~~Giy~f~~~~l~~~~~ 186 (450)
T PRK14360 167 NRINAGIYCFNWPALAEVLP 186 (450)
T ss_pred cEEEEEEEEEEHHHHHHHHh
Confidence 22588899999988887764
No 24
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=97.42 E-value=0.0046 Score=70.90 Aligned_cols=184 Identities=15% Similarity=0.131 Sum_probs=104.6
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHH
Q 002690 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (892)
Q Consensus 288 kvAvVlLAGGlGTRLG~~~PKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~~~Th~~T~ 367 (892)
.+..|+||||.|||||...||. ++|+ .|++++++.++.+.+. + .-.++|.|+. ..+...
T Consensus 5 ~~~aiILAaG~gtR~~~~~pK~--l~~i-----~gkpli~~~l~~l~~~--------~---~~~iivv~~~---~~~~i~ 63 (456)
T PRK14356 5 TTGALILAAGKGTRMHSDKPKV--LQTL-----LGEPMLRFVYRALRPL--------F---GDNVWTVVGH---RADMVR 63 (456)
T ss_pred ceeEEEEcCCCCccCCCCCCce--eccc-----CCCcHHHHHHHHHHhc--------C---CCcEEEEECC---CHHHHH
Confidence 5778999999999999889999 9998 7999999998877442 2 1246666776 445555
Q ss_pred HHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCcccccCCCc-HHHHHHHhcCchHHHHHcCceEEEEEeCC
Q 002690 368 SLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHG-AIWKLAHDKGIFKWFHDNGRKGATVRQVS 446 (892)
Q Consensus 368 ~fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dGkilL~~~~~i~~~P~GHG-dIy~aL~~sGlLd~l~~~Gikyi~V~qVD 446 (892)
+++.+ .++.+..|+ .|.|-| .++.++ +.|.+.+.+++.+...|
T Consensus 64 ~~~~~--------~~~~~v~~~----------------------~~~Gt~~al~~a~------~~l~~~~~d~vlv~~gD 107 (456)
T PRK14356 64 AAFPD--------EDARFVLQE----------------------QQLGTGHALQCAW------PSLTAAGLDRVLVVNGD 107 (456)
T ss_pred Hhccc--------cCceEEEcC----------------------CCCCcHHHHHHHH------HHHhhcCCCcEEEEeCC
Confidence 54432 122222221 133433 344433 44544567899999999
Q ss_pred CCccccChhHHHHHHhhhhcCCceeEEEeeecCCCCcCceEEEEeecCCCccccceEEEEecccCccCCCCCCCCCCCcc
Q 002690 447 NVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQ 526 (892)
Q Consensus 447 N~La~vDP~il~flG~~~~~~~d~~~ksvvRK~~~~EkVGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~~~~dg~l~ 526 (892)
.++...+ .+-.++-.. .+.+..+.+ .+-..+ ..-|++.. .+|+ -..++|-..+++.. . .. .
T Consensus 108 ~P~i~~~-~i~~li~~~--~~~~~~l~~-~~~~~~-~~~g~v~~---~~g~---V~~~~ek~~~~~~~---~-~~--~-- 168 (456)
T PRK14356 108 TPLVTTD-TIDDFLKEA--AGADLAFMT-LTLPDP-GAYGRVVR---RNGH---VAAIVEAKDYDEAL---H-GP--E-- 168 (456)
T ss_pred cccCCHH-HHHHHHHHH--hcCCEEEEE-EEcCCC-CCceEEEE---cCCe---EEEEEECCCCChHH---h-hh--h--
Confidence 9876542 122233332 244444443 332333 24567653 4665 12334422222111 0 00 0
Q ss_pred ccCccceeeeEEeHHHHHhhhc
Q 002690 527 ADFPANTNILYVDLASAELVGS 548 (892)
Q Consensus 527 S~F~aNInn~~fsL~fL~~vl~ 548 (892)
....|+..++|+-+++++++.
T Consensus 169 -~~~~~~GiY~f~~~~l~~ll~ 189 (456)
T PRK14356 169 -TGEVNAGIYYLRLDAVESLLP 189 (456)
T ss_pred -cCeEEEEEEEEEHHHHHHHHH
Confidence 012489999999998877664
No 25
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=97.40 E-value=0.0091 Score=67.78 Aligned_cols=178 Identities=14% Similarity=0.115 Sum_probs=106.6
Q ss_pred EEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHHH
Q 002690 289 LGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITS 368 (892)
Q Consensus 289 vAvVlLAGGlGTRLG~~~PKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~~~Th~~T~~ 368 (892)
+.+|+||||.||||+...||- ++|+ .|+++++..+++++.. . -.++|+++. ..+...+
T Consensus 3 ~~aiIlAaG~GtRl~~~~pK~--Llpi-----~gkPli~~~i~~l~~~--------~----~~i~Ivv~~---~~~~i~~ 60 (430)
T PRK14359 3 LSIIILAAGKGTRMKSSLPKV--LHTI-----CGKPMLFYILKEAFAI--------S----DDVHVVLHH---QKERIKE 60 (430)
T ss_pred ccEEEEcCCCCccCCCCCCce--eCEE-----CCccHHHHHHHHHHHc--------C----CcEEEEECC---CHHHHHH
Confidence 467899999999999989999 9998 6999999999888652 1 236777776 5777888
Q ss_pred HHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCcccccCCCcHHHHHHHhcCchHHHHHcCceEEEEEeCCCC
Q 002690 369 LCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNV 448 (892)
Q Consensus 369 fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dGkilL~~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~~Gikyi~V~qVDN~ 448 (892)
++.+. ++ .+.+..|+. ..+.|.|+....+ ...-+++.+.+.|++
T Consensus 61 ~~~~~--~~----~v~~~~~~~--------------------~~~~gt~~al~~~----------~~~~d~vlv~~gD~p 104 (430)
T PRK14359 61 AVLEY--FP----GVIFHTQDL--------------------ENYPGTGGALMGI----------EPKHERVLILNGDMP 104 (430)
T ss_pred HHHhc--CC----ceEEEEecC--------------------ccCCCcHHHHhhc----------ccCCCeEEEEECCcc
Confidence 88752 21 344443321 1234555543321 112478999999998
Q ss_pred ccccChhHHHHHHhhhhcCCceeEEEeeecCCCCcCceEEEEeecCCCccccceEEEEecccCccCCCCCCCCCCCcccc
Q 002690 449 VAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQAD 528 (892)
Q Consensus 449 La~vDP~il~flG~~~~~~~d~~~ksvvRK~~~~EkVGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~~~~dg~l~S~ 528 (892)
+... .. +-.....++++.+.+ .+...+. .-|++.. .+|+ ...++|......+ ... .
T Consensus 105 ~~~~--~~---l~~l~~~~~~~~v~~-~~~~~~~-~~g~v~~---d~g~---v~~i~e~~~~~~~----------~~~-~ 160 (430)
T PRK14359 105 LVEK--DE---LEKLLENDADIVMSV-FHLADPK-GYGRVVI---ENGQ---VKKIVEQKDANEE----------ELK-I 160 (430)
T ss_pred CCCH--HH---HHHHHhCCCCEEEEE-EEcCCCc-cCcEEEE---cCCe---EEEEEECCCCCcc----------ccc-c
Confidence 7433 21 233344455554443 3333332 3456543 4565 1334443322111 000 1
Q ss_pred CccceeeeEEeHHHHHhhhc
Q 002690 529 FPANTNILYVDLASAELVGS 548 (892)
Q Consensus 529 F~aNInn~~fsL~fL~~vl~ 548 (892)
+..|+..++|+-+++++.+.
T Consensus 161 ~~~~~Giyif~~~~l~~~~~ 180 (430)
T PRK14359 161 KSVNAGVYLFDRKLLEEYLP 180 (430)
T ss_pred eEEEeEEEEEEHHHHHHHHH
Confidence 33489999999999987664
No 26
>PRK15480 glucose-1-phosphate thymidylyltransferase RfbA; Provisional
Probab=97.36 E-value=0.01 Score=65.31 Aligned_cols=181 Identities=19% Similarity=0.224 Sum_probs=107.5
Q ss_pred cEEEEEecCCccccCCC---CCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchH
Q 002690 288 ELGEIYPLGGSADRLGL---VDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHE 364 (892)
Q Consensus 288 kvAvVlLAGGlGTRLG~---~~PKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~~~Th~ 364 (892)
.+-.|+||||.||||.- ..||- ++|| .+|+++++.++.+... | .--++|.+.. .-.+
T Consensus 3 ~~kaIILAgG~GtRL~PlT~~~pK~--Llpv-----~gkPmI~~~l~~l~~a--------G---i~~I~ii~~~--~~~~ 62 (292)
T PRK15480 3 TRKGIILAGGSGTRLYPVTMAVSKQ--LLPI-----YDKPMIYYPLSTLMLA--------G---IRDILIISTP--QDTP 62 (292)
T ss_pred ceEEEEECCCcccccCcccCCCCce--EeEE-----CCEEHHHHHHHHHHHC--------C---CCEEEEEecC--CchH
Confidence 46679999999999985 78999 9999 6899999988887652 4 2235555555 3455
Q ss_pred HHHHHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCcccccCCCcHHHHHHHhcCchHHHHHcCceEEEEEe
Q 002690 365 RITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQ 444 (892)
Q Consensus 365 ~T~~fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dGkilL~~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~~Gikyi~V~q 444 (892)
...++|.+...||+ ++.+..|. .|.|-|+-+.... ++.. +-+ +.+..
T Consensus 63 ~~~~~l~~g~~~g~---~i~y~~q~----------------------~~~Gta~Al~~a~------~~i~-~~~-~~lv~ 109 (292)
T PRK15480 63 RFQQLLGDGSQWGL---NLQYKVQP----------------------SPDGLAQAFIIGE------EFIG-GDD-CALVL 109 (292)
T ss_pred HHHHHHcCccccCc---eeEEEECC----------------------CCCCHHHHHHHHH------HHhC-CCC-EEEEE
Confidence 67888877666776 34333332 2667666554332 2222 223 45556
Q ss_pred CCCCccccChhHHHHHHhhhhcCCceeEEEeeecCCCCcCceEEEEeecCCCccccceEEEEecccCccCCCCCCCCCCC
Q 002690 445 VSNVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNG 524 (892)
Q Consensus 445 VDN~La~vDP~il~flG~~~~~~~d~~~ksvvRK~~~~EkVGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~~~~dg~ 524 (892)
-||++...|-. .++-.+...+.++.+.+ .+...+ +.-|++.. ..+|+ ++++.|=|... .+
T Consensus 110 gD~i~~~~~l~--~ll~~~~~~~~~~tv~~-~~v~~p-~~yGvv~~--d~~g~------v~~i~EKP~~p--------~s 169 (292)
T PRK15480 110 GDNIFYGHDLP--KLMEAAVNKESGATVFA-YHVNDP-ERYGVVEF--DQNGT------AISLEEKPLQP--------KS 169 (292)
T ss_pred CCeeeeccCHH--HHHHHHHhCCCCeEEEE-EEcCCc-ccCcEEEE--CCCCc------EEEEEECCCCC--------CC
Confidence 88987655432 55666655565555443 333333 45677754 13455 33333322210 01
Q ss_pred ccccCccceeeeEEeHHHHHh
Q 002690 525 LQADFPANTNILYVDLASAEL 545 (892)
Q Consensus 525 l~S~F~aNInn~~fsL~fL~~ 545 (892)
..+|+..++|+-+.++.
T Consensus 170 ----~~a~~GiY~~~~~v~~~ 186 (292)
T PRK15480 170 ----NYAVTGLYFYDNDVVEM 186 (292)
T ss_pred ----CEEEEEEEEEChHHHHH
Confidence 12589999999765543
No 27
>PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=97.31 E-value=0.019 Score=60.13 Aligned_cols=188 Identities=14% Similarity=0.117 Sum_probs=104.2
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHH
Q 002690 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (892)
Q Consensus 288 kvAvVlLAGGlGTRLG~~~PKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~~~Th~~T~ 367 (892)
+++.|+||||.++||+ +|. ++|+ .|+++++..++.+... | .-.++| .+. ++.+.
T Consensus 2 ~~~~iIlA~g~S~R~~---~K~--Ll~i-----~Gkpll~~~l~~l~~~--------~---i~~ivv-v~~----~~~i~ 55 (245)
T PRK05450 2 KFLIIIPARYASTRLP---GKP--LADI-----GGKPMIVRVYERASKA--------G---ADRVVV-ATD----DERIA 55 (245)
T ss_pred ceEEEEecCCCCCCCC---CCc--cccc-----CCcCHHHHHHHHHHhc--------C---CCeEEE-ECC----cHHHH
Confidence 5788999999999996 698 9888 7999999999987653 2 112334 322 35677
Q ss_pred HHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCcccccCCCcHHHHHHHhcCchHHHHHcCceEEEEEeCCC
Q 002690 368 SLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSN 447 (892)
Q Consensus 368 ~fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dGkilL~~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~~Gikyi~V~qVDN 447 (892)
+++.+ +|. .+.+..| ..+.|-+.+..++..-+ ..+-.++.+.+.|+
T Consensus 56 ~~~~~---~~~---~v~~~~~----------------------~~~~gt~~~~~~~~~~~------~~~~~~vlv~~~D~ 101 (245)
T PRK05450 56 DAVEA---FGG---EVVMTSP----------------------DHPSGTDRIAEAAAKLG------LADDDIVVNVQGDE 101 (245)
T ss_pred HHHHH---cCC---EEEECCC----------------------cCCCchHHHHHHHHhcC------CCCCCEEEEecCCC
Confidence 77754 232 2211001 12445555554443211 12346899999999
Q ss_pred CccccChhHHHHHHhhhhcCCceeEEEeeecC-----CCCcCceEEEEeecCCCccccceEEEEecccCccCCCCCCCCC
Q 002690 448 VVAATDLTLLALAGIGLHHGKKLGFASCKRSS-----GATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSS 522 (892)
Q Consensus 448 ~La~vDP~il~flG~~~~~~~d~~~ksvvRK~-----~~~EkVGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~~~~d 522 (892)
++...+- +-.++-.+...+.++.+.+ .+.. ...+.++++.. .+|+ +++..+-+.....+. .++
T Consensus 102 Pli~~~~-l~~li~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~d---~~g~------v~~~~e~~~~~~~~~-~~~ 169 (245)
T PRK05450 102 PLIPPEI-IDQVAEPLANPEADMATLA-VPIHDAEEAFNPNVVKVVLD---ADGR------ALYFSRAPIPYGRDA-FAD 169 (245)
T ss_pred CCCCHHH-HHHHHHHHhcCCCCeEeee-eecCCHHHhcCcCCCEEEeC---CCCc------EEEecCCCCCCCCCc-ccc
Confidence 9876521 2234444434445555554 3331 12223566532 4555 456666553210100 111
Q ss_pred CCccccCccceeeeEEeHHHHHhhhc
Q 002690 523 NGLQADFPANTNILYVDLASAELVGS 548 (892)
Q Consensus 523 g~l~S~F~aNInn~~fsL~fL~~vl~ 548 (892)
..- ...-.|+....|+-..++.+.+
T Consensus 170 ~~~-~~~~~~~Giy~~~~~~l~~~~~ 194 (245)
T PRK05450 170 SAP-TPVYRHIGIYAYRRGFLRRFVS 194 (245)
T ss_pred ccC-ccccEEEEEEecCHHHHHHHHh
Confidence 100 0123499999999988877654
No 28
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=97.26 E-value=0.011 Score=67.55 Aligned_cols=184 Identities=17% Similarity=0.202 Sum_probs=104.0
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHH
Q 002690 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (892)
Q Consensus 288 kvAvVlLAGGlGTRLG~~~PKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~~~Th~~T~ 367 (892)
++..|+||||.|||||...||. ++|+ .||+++++.++.+... | .-.++|.++. .++...
T Consensus 5 ~~~aiILAaG~gsR~~~~~pK~--ll~v-----~gkpli~~~l~~l~~~--------g---i~~ivvv~~~---~~~~i~ 63 (446)
T PRK14353 5 TCLAIILAAGEGTRMKSSLPKV--LHPV-----AGRPMLAHVLAAAASL--------G---PSRVAVVVGP---GAEAVA 63 (446)
T ss_pred cceEEEEcCCCCCccCCCCCcc--cCEE-----CCchHHHHHHHHHHhC--------C---CCcEEEEECC---CHHHHH
Confidence 5678999999999999888999 9998 6899999999888653 2 2356777776 566677
Q ss_pred HHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCcccccCCCcH-HHHHHHhcCchHHHHHcCceEEEEEeCC
Q 002690 368 SLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGA-IWKLAHDKGIFKWFHDNGRKGATVRQVS 446 (892)
Q Consensus 368 ~fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dGkilL~~~~~i~~~P~GHGd-Iy~aL~~sGlLd~l~~~Gikyi~V~qVD 446 (892)
+++.+. +. .+.++.|. .|.|.++ ++.++ +.+ ..+-+++.+.+.|
T Consensus 64 ~~~~~~---~~---~~~~~~~~----------------------~~~G~~~sl~~a~------~~l-~~~~~~~lv~~~D 108 (446)
T PRK14353 64 AAAAKI---AP---DAEIFVQK----------------------ERLGTAHAVLAAR------EAL-AGGYGDVLVLYGD 108 (446)
T ss_pred HHhhcc---CC---CceEEEcC----------------------CCCCcHHHHHHHH------HHH-hccCCCEEEEeCC
Confidence 776541 11 12222220 1334433 33333 222 2234778888999
Q ss_pred CCccccChhHHHHHHhhhhcCCceeEEEeeecCCCCcCceEEEEeecCCCccccceEEEEecccCccCCCCCCCCCCCcc
Q 002690 447 NVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQ 526 (892)
Q Consensus 447 N~La~vDP~il~flG~~~~~~~d~~~ksvvRK~~~~EkVGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~~~~dg~l~ 526 (892)
.++...+ .+-.++- ....+.+..+.+ .+.. ...+.|++.. .+|+ ++++.|=++.. . .+...
T Consensus 109 ~P~i~~~-~l~~l~~-~~~~~~~~~i~~-~~~~-~~~~~g~~~~---~~g~------v~~~~ek~~~~-~----~~~~~- 169 (446)
T PRK14353 109 TPLITAE-TLARLRE-RLADGADVVVLG-FRAA-DPTGYGRLIV---KGGR------LVAIVEEKDAS-D----EERAI- 169 (446)
T ss_pred cccCCHH-HHHHHHH-hHhcCCcEEEEE-EEeC-CCCcceEEEE---CCCe------EEEEEECCCCC-h----HHhhc-
Confidence 9765442 1212222 223444544443 3332 2235666653 4554 34444422221 0 00000
Q ss_pred ccCccceeeeEEeHHHHHhhhc
Q 002690 527 ADFPANTNILYVDLASAELVGS 548 (892)
Q Consensus 527 S~F~aNInn~~fsL~fL~~vl~ 548 (892)
+-.|+..++|+-+.+.+.++
T Consensus 170 --~~~~~Giy~~~~~~l~~~l~ 189 (446)
T PRK14353 170 --TLCNSGVMAADGADALALLD 189 (446)
T ss_pred --eEEEEEEEEEEHHHHHHHHH
Confidence 23488999999887766654
No 29
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=97.21 E-value=0.011 Score=68.98 Aligned_cols=148 Identities=17% Similarity=0.214 Sum_probs=88.4
Q ss_pred CcEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHH
Q 002690 287 PELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERI 366 (892)
Q Consensus 287 ~kvAvVlLAGGlGTRLG~~~PKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~~~Th~~T 366 (892)
.++..|+||||.|||||...||. ++|+ .|+++++..++++.+. | .-.++|.|.. ..+..
T Consensus 6 ~~~~avILAaG~gtRl~~~~pK~--llpi-----~gkpli~~~l~~l~~~--------g---i~~ivvv~~~---~~~~i 64 (481)
T PRK14358 6 RPLDVVILAAGQGTRMKSALPKV--LHPV-----AGRPMVAWAVKAARDL--------G---ARKIVVVTGH---GAEQV 64 (481)
T ss_pred CCceEEEECCCCCCcCCCCCCce--ecEE-----CCeeHHHHHHHHHHhC--------C---CCeEEEEeCC---CHHHH
Confidence 36788999999999999888999 9998 6899999988877552 3 2346666766 55666
Q ss_pred HHHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCcccccCCCcH-HHHHHHhcCchHHHHHcCceEEEEEeC
Q 002690 367 TSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGA-IWKLAHDKGIFKWFHDNGRKGATVRQV 445 (892)
Q Consensus 367 ~~fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dGkilL~~~~~i~~~P~GHGd-Iy~aL~~sGlLd~l~~~Gikyi~V~qV 445 (892)
.++|+. + .+.+..|. .|.|-|+ ++.++. .+. ..-..+.|.+.
T Consensus 65 ~~~~~~---~-----~i~~v~~~----------------------~~~Gt~~al~~~~~------~l~-~~~~~~lV~~g 107 (481)
T PRK14358 65 EAALQG---S-----GVAFARQE----------------------QQLGTGDAFLSGAS------ALT-EGDADILVLYG 107 (481)
T ss_pred HHHhcc---C-----CcEEecCC----------------------CcCCcHHHHHHHHH------Hhh-CCCCcEEEEeC
Confidence 666642 1 23232221 1344444 333332 222 22233678899
Q ss_pred CCCccccChhHHHHHHhhhhcCCceeEEEeeecCCCCcCceEEEEeecCCCc
Q 002690 446 SNVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGK 497 (892)
Q Consensus 446 DN~La~vDP~il~flG~~~~~~~d~~~ksvvRK~~~~EkVGvL~~~~~~dGk 497 (892)
|+++...+ .+-.++-.+...++++.+.+ .+.+.+ .+-|++.. ..+|+
T Consensus 108 D~P~i~~~-~l~~ll~~~~~~~~~~ti~~-~~~~~~-~~yG~v~~--d~~g~ 154 (481)
T PRK14358 108 DTPLLRPD-TLRALVADHRAQGSAMTILT-GELPDA-TGYGRIVR--GADGA 154 (481)
T ss_pred CeeccCHH-HHHHHHHHHHhcCCeEEEEE-EEcCCC-CCceEEEE--CCCCC
Confidence 99876541 22244566666666655443 333322 34678754 23555
No 30
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=97.21 E-value=0.012 Score=67.79 Aligned_cols=185 Identities=14% Similarity=0.110 Sum_probs=107.0
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHH
Q 002690 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (892)
Q Consensus 288 kvAvVlLAGGlGTRLG~~~PKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~~~Th~~T~ 367 (892)
++..|+||||.||||+...||. ++|+ .|++++++.++++.+. | .-.++|.|+. ..+...
T Consensus 3 ~~~avIlAaG~g~Rl~~~~pK~--l~pi-----~g~pli~~~l~~l~~~--------g---i~~iiiv~~~---~~~~i~ 61 (459)
T PRK14355 3 NLAAIILAAGKGTRMKSDLVKV--MHPL-----AGRPMVSWPVAAAREA--------G---AGRIVLVVGH---QAEKVR 61 (459)
T ss_pred cceEEEEcCCCCcccCCCCCce--ecee-----CCccHHHHHHHHHHhc--------C---CCeEEEEECC---CHHHHH
Confidence 5677899999999999889999 9998 6889999988877553 3 3367888887 566677
Q ss_pred HHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCcccccCCCcH-HHHHHHhcCchHHHHHcCceEEEEEeCC
Q 002690 368 SLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGA-IWKLAHDKGIFKWFHDNGRKGATVRQVS 446 (892)
Q Consensus 368 ~fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dGkilL~~~~~i~~~P~GHGd-Iy~aL~~sGlLd~l~~~Gikyi~V~qVD 446 (892)
++|.+.. .+.+..|. .|-|.|+ ++.++ +.+ +..-+++.+.+.|
T Consensus 62 ~~~~~~~-------~i~~~~~~----------------------~~~Gt~~al~~a~------~~l-~~~~~~vlv~~gD 105 (459)
T PRK14355 62 EHFAGDG-------DVSFALQE----------------------EQLGTGHAVACAA------PAL-DGFSGTVLILCGD 105 (459)
T ss_pred HHhccCC-------ceEEEecC----------------------CCCCHHHHHHHHH------HHh-hccCCcEEEEECC
Confidence 7765311 23322221 1335554 33332 222 2224789999999
Q ss_pred CCccccChhHHHHHHhhhhcCCceeEEEeeecCCCCcCceEEEEeecCCCccccceEEEEecccCccCCCCCCCCCCCcc
Q 002690 447 NVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQ 526 (892)
Q Consensus 447 N~La~vDP~il~flG~~~~~~~d~~~ksvvRK~~~~EkVGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~~~~dg~l~ 526 (892)
+++...+ .+-.++-.+...+.++.+.. .+...+ ..-|++.. ..+|+ ++++.|=++.. ... . .
T Consensus 106 ~p~~~~~-~i~~l~~~~~~~~~~~~v~~-~~~~~~-~~~g~v~~--d~~g~------v~~~~ek~~~~-~~~---~-~-- 167 (459)
T PRK14355 106 VPLLRAE-TLQGMLAAHRATGAAVTVLT-ARLENP-FGYGRIVR--DADGR------VLRIVEEKDAT-PEE---R-S-- 167 (459)
T ss_pred ccCcCHH-HHHHHHHHHHhcCCcEEEEE-EEcCCC-CcCCEEEE--cCCCC------EEEEEEcCCCC-hhH---h-h--
Confidence 9865431 12234455544554444332 333333 33456543 13444 34444322221 000 0 0
Q ss_pred ccCccceeeeEEeHHHHHhhhc
Q 002690 527 ADFPANTNILYVDLASAELVGS 548 (892)
Q Consensus 527 S~F~aNInn~~fsL~fL~~vl~ 548 (892)
.+..|++.++|+-+++.+.+.
T Consensus 168 -~~~~~~Giy~~~~~~l~~~l~ 188 (459)
T PRK14355 168 -IREVNSGIYCVEAAFLFDAIG 188 (459)
T ss_pred -ccEEEEEEEEEeHHHHHHHHH
Confidence 123599999999988766654
No 31
>PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry.; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C ....
Probab=97.20 E-value=0.0035 Score=65.29 Aligned_cols=185 Identities=16% Similarity=0.167 Sum_probs=111.4
Q ss_pred EEecCCccccCC---CCCCCCCceeeccccCCCCC-cchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHH
Q 002690 292 IYPLGGSADRLG---LVDHETGECLPAAMLPYCGR-TLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (892)
Q Consensus 292 VlLAGGlGTRLG---~~~PKgg~~lpV~l~p~sgk-TlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~~~Th~~T~ 367 (892)
|+||||.||||. ...||- ++|+ .|+ +++++.++++... | ..-.++|.+.. ..+...
T Consensus 3 vIla~G~GtRl~plt~~~pK~--ll~i-----~g~~pli~~~l~~l~~~--------g--~~~ii~V~~~~---~~~~i~ 62 (248)
T PF00483_consen 3 VILAGGKGTRLRPLTDTIPKP--LLPI-----GGKYPLIDYVLENLANA--------G--IKEIIVVVNGY---KEEQIE 62 (248)
T ss_dssp EEEEESCCGGGTTTTTTSSGG--GSEE-----TTEEEHHHHHHHHHHHT--------T--CSEEEEEEETT---THHHHH
T ss_pred EEECCCCCccCchhhhccccc--ccee-----cCCCcchhhhhhhhccc--------C--CceEEEEEeec---cccccc
Confidence 567999999997 678999 9998 577 9999999988764 3 33345666655 677888
Q ss_pred HHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCcccccCCCcHHHHHHHhcCchHHHHHcC-ceEEEEEeCC
Q 002690 368 SLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNG-RKGATVRQVS 446 (892)
Q Consensus 368 ~fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dGkilL~~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~~G-ikyi~V~qVD 446 (892)
+++++...+++ +|.+..|+ .|.|.|+-...+ .+.+.... -+++.|.+.|
T Consensus 63 ~~~~~~~~~~~---~i~~i~~~----------------------~~~Gta~al~~a-----~~~i~~~~~~~~~lv~~gD 112 (248)
T PF00483_consen 63 EHLGSGYKFGV---KIEYIVQP----------------------EPLGTAGALLQA-----LDFIEEEDDDEDFLVLNGD 112 (248)
T ss_dssp HHHTTSGGGTE---EEEEEEES----------------------SSSCHHHHHHHT-----HHHHTTSEE-SEEEEETTE
T ss_pred ccccccccccc---cceeeecc----------------------cccchhHHHHHH-----HHHhhhccccceEEEEecc
Confidence 99988665552 23332221 111444433322 12222222 3579999999
Q ss_pred CCccccChhHHHHHHhhhhcCCceeEEEeeecCCCCcCceEEEEeecCCCccccceEEEEecccCccCCCCCCCCCCCcc
Q 002690 447 NVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQ 526 (892)
Q Consensus 447 N~La~vDP~il~flG~~~~~~~d~~~ksvvRK~~~~EkVGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~~~~dg~l~ 526 (892)
++.-. |. ..++-.+...+.++.+.+.........+-|++.. ..+|+ |++.-|=|..... +
T Consensus 113 ~i~~~-~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~--d~~~~------V~~~~EKP~~~~~-------~-- 172 (248)
T PF00483_consen 113 IIFDD-DL--QDMLEFHRESNADGTVTLLVVPVEDPSRYGVVEV--DEDGR------VIRIVEKPDNPNA-------S-- 172 (248)
T ss_dssp EEEST-TH--HHHHHHHHHHSSCESEEEEEEESSGGGGSEEEEE--ETTSE------EEEEEESCSSHSH-------S--
T ss_pred ccccc-hh--hhHHHhhhccccccccccccccccccccceeeee--cccee------EEEEeccCccccc-------c--
Confidence 85544 43 3667888888876644432222333445667654 24454 4444443332200 0
Q ss_pred ccCccceeeeEEeHHHHHhhhc
Q 002690 527 ADFPANTNILYVDLASAELVGS 548 (892)
Q Consensus 527 S~F~aNInn~~fsL~fL~~vl~ 548 (892)
-..|+..++|+-+.+..+++
T Consensus 173 --~~~~~G~Y~~~~~~~~~~~~ 192 (248)
T PF00483_consen 173 --NLINTGIYIFKPEIFDFLLE 192 (248)
T ss_dssp --SEEEEEEEEEETHHHHHHHH
T ss_pred --eeccCceEEEcchHHHHHhh
Confidence 12489999999998877753
No 32
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=97.19 E-value=0.0068 Score=69.50 Aligned_cols=186 Identities=14% Similarity=0.108 Sum_probs=129.2
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHH
Q 002690 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (892)
Q Consensus 288 kvAvVlLAGGlGTRLG~~~PKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~~~Th~~T~ 367 (892)
.+.+|+||-|+||||-++-||. +=|+ .||+.++..++.+..+.- -. +++..+. -.+..+
T Consensus 2 ~~~~vILAAGkGTRMkS~lPKV--LH~v-----aGkpMl~hVi~~a~~l~~---------~~--i~vVvGh---~ae~V~ 60 (460)
T COG1207 2 SLSAVILAAGKGTRMKSDLPKV--LHPV-----AGKPMLEHVIDAARALGP---------DD--IVVVVGH---GAEQVR 60 (460)
T ss_pred CceEEEEecCCCccccCCCccc--chhc-----cCccHHHHHHHHHhhcCc---------ce--EEEEEcC---CHHHHH
Confidence 4678999999999999999999 7776 899999999998887641 12 2333444 567777
Q ss_pred HHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCcccccCCCcHHHHHHHhcCchHHHHHcCce-EEEEEeCC
Q 002690 368 SLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRK-GATVRQVS 446 (892)
Q Consensus 368 ~fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dGkilL~~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~~Gik-yi~V~qVD 446 (892)
+-+.+.. ++.|+.|.. -+ -+|+-++ . ....+.++.+ .+.|.+-|
T Consensus 61 ~~~~~~~-------~v~~v~Q~e--ql--GTgHAV~--------------------~----a~~~l~~~~~g~vLVl~GD 105 (460)
T COG1207 61 EALAERD-------DVEFVLQEE--QL--GTGHAVL--------------------Q----ALPALADDYDGDVLVLYGD 105 (460)
T ss_pred HHhcccc-------CceEEEecc--cC--ChHHHHH--------------------h----hhhhhhcCCCCcEEEEeCC
Confidence 7776532 577888876 11 2333221 1 1233445555 78899999
Q ss_pred CCccccChhHHHHHHhhhhcCCceeEEEeeecCCCCcCceEEEEeecCCCccccceEEEEecccCccCCCCCCCCCCCcc
Q 002690 447 NVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQ 526 (892)
Q Consensus 447 N~La~vDP~il~flG~~~~~~~d~~~ksvvRK~~~~EkVGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~~~~dg~l~ 526 (892)
=+|...+ +|-.++......+++....+ ..-++| .+-|.+++ +.+|+ ...+||.-+.+++. +
T Consensus 106 ~PLit~~-TL~~L~~~~~~~~~~~tvLt-~~~~dP-~GYGRIvr--~~~g~---V~~IVE~KDA~~ee---------k-- 166 (460)
T COG1207 106 VPLITAE-TLEELLAAHPAHGAAATVLT-AELDDP-TGYGRIVR--DGNGE---VTAIVEEKDASEEE---------K-- 166 (460)
T ss_pred cccCCHH-HHHHHHHhhhhcCCceEEEE-EEcCCC-CCcceEEE--cCCCc---EEEEEEcCCCCHHH---------h--
Confidence 9998875 34457888887788888876 444444 36678876 35666 37799988777764 1
Q ss_pred ccCc-cceeeeEEeHHHHHhhhcc
Q 002690 527 ADFP-ANTNILYVDLASAELVGSS 549 (892)
Q Consensus 527 S~F~-aNInn~~fsL~fL~~vl~~ 549 (892)
.-. .|+..+.|+-..|.+.|.+
T Consensus 167 -~I~eiNtGiy~f~~~~L~~~L~~ 189 (460)
T COG1207 167 -QIKEINTGIYAFDGAALLRALPK 189 (460)
T ss_pred -cCcEEeeeEEEEcHHHHHHHHHH
Confidence 123 3999999999999998863
No 33
>cd02509 GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose. GDP-mannose-1-phosphate guanylyltransferase, also called GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the formation of GDP-Mannose from mannose-1-phosphate and GTP. Mannose is a key monosaccharide for glycosylation of proteins and lipids. GDP-Mannose is the activated donor for mannosylation of various biomolecules. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase and mannose-1-phosphate guanylyltransferase. This CD covers the N-terminal GDP-mannose-1-phosphate guanylyltransferase domain, whereas the isomerase function is located at the C-terminal half. GDP-MP is a member of the nucleotidyltransferase family of enzymes.
Probab=97.16 E-value=0.0057 Score=66.30 Aligned_cols=197 Identities=13% Similarity=0.103 Sum_probs=109.7
Q ss_pred EEEecCCccccCC----CCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHH
Q 002690 291 EIYPLGGSADRLG----LVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERI 366 (892)
Q Consensus 291 vVlLAGGlGTRLG----~~~PKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~~~Th~~T 366 (892)
.|+||||.||||. ...||- ++|+. .++|++|..++++..+. + .-.++|.|+. ...+.+
T Consensus 3 ~vILAgG~GtRl~PlS~~~~PK~--ll~l~----g~~~li~~~l~~l~~~~-------~---~~~i~vvt~~--~~~~~v 64 (274)
T cd02509 3 PVILAGGSGTRLWPLSRESYPKQ--FLKLF----GDKSLLQQTLDRLKGLV-------P---PDRILVVTNE--EYRFLV 64 (274)
T ss_pred EEEEcccccccCCcCCCCCCCce--EeEcC----CCCcHHHHHHHHHhcCC-------C---CCcEEEEech--HHHHHH
Confidence 6889999999996 578999 99983 34999999999876541 1 2378888987 455667
Q ss_pred HHHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCcccccCCCcH-HHHHHHhcCchHHHHH-cCceEEEEEe
Q 002690 367 TSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGA-IWKLAHDKGIFKWFHD-NGRKGATVRQ 444 (892)
Q Consensus 367 ~~fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dGkilL~~~~~i~~~P~GHGd-Iy~aL~~sGlLd~l~~-~Gikyi~V~q 444 (892)
.+++++ ++ . .+.++.|+ .|.|-|+ +..++. .+.+ .+-+++.|..
T Consensus 65 ~~~l~~---~~-~--~~~ii~ep----------------------~~~gTa~ai~~a~~------~~~~~~~~~~vlVl~ 110 (274)
T cd02509 65 REQLPE---GL-P--EENIILEP----------------------EGRNTAPAIALAAL------YLAKRDPDAVLLVLP 110 (274)
T ss_pred HHHHhh---cC-C--CceEEECC----------------------CCCCcHHHHHHHHH------HHHhcCCCCeEEEec
Confidence 777765 11 1 12222221 1122232 332221 2222 2347899999
Q ss_pred CCCCccccChhHHHHHHhh---hhcCCceeEEEeeecCCCCcCceEEEEeecCCCccccceEEEEecccCccCCCCCCCC
Q 002690 445 VSNVVAATDLTLLALAGIG---LHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFS 521 (892)
Q Consensus 445 VDN~La~vDP~il~flG~~---~~~~~d~~~ksvvRK~~~~EkVGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~~~~ 521 (892)
.|.++...+ .+...+--+ ...+..+.+.+ .+ ..+..+-|.+......+|. ...|..+.|=|+...++.-..
T Consensus 111 ~D~~i~~~~-~f~~~l~~~~~~~~~~~~vt~gi-~p-~~~~t~yGyI~~~~~~~~~---~~~V~~f~EKP~~~~a~~~~~ 184 (274)
T cd02509 111 SDHLIEDVE-AFLKAVKKAVEAAEEGYLVTFGI-KP-TRPETGYGYIEAGEKLGGG---VYRVKRFVEKPDLETAKEYLE 184 (274)
T ss_pred chhcccCHH-HHHHHHHHHHHHHHcCCEEEEEe-ee-cCCCCCeEEEEeCCcCCCC---ceEEeEEEECcChHHHHHHhh
Confidence 998875321 010111111 12344444443 22 3455677888641011121 024555555554421111111
Q ss_pred CCCccccCccceeeeEEeHHHHHhhhcc
Q 002690 522 SNGLQADFPANTNILYVDLASAELVGSS 549 (892)
Q Consensus 522 dg~l~S~F~aNInn~~fsL~fL~~vl~~ 549 (892)
+| .|-.|...++|+.+.+.+.+++
T Consensus 185 ~g----~~~wNsGiyi~~~~~l~~~l~~ 208 (274)
T cd02509 185 SG----NYLWNSGIFLFRAKTFLEELKK 208 (274)
T ss_pred cC----CeEEECceeeeeHHHHHHHHHH
Confidence 12 1445999999999999999875
No 34
>cd06426 NTP_transferase_like_2 NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=97.16 E-value=0.018 Score=59.05 Aligned_cols=173 Identities=17% Similarity=0.161 Sum_probs=98.3
Q ss_pred EEEecCCccccCC---CCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHH
Q 002690 291 EIYPLGGSADRLG---LVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (892)
Q Consensus 291 vVlLAGGlGTRLG---~~~PKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~~~Th~~T~ 367 (892)
+|+||||.|+||+ ...||. ++|+ .|+++++..++++... | +. .++|.++. ..+...
T Consensus 1 ~vIlaaG~g~R~~plt~~~pK~--ll~~-----~g~pli~~~l~~l~~~--------~--~~-~iivv~~~---~~~~i~ 59 (220)
T cd06426 1 VVIMAGGKGTRLRPLTENTPKP--MLKV-----GGKPILETIIDRFIAQ--------G--FR-NFYISVNY---LAEMIE 59 (220)
T ss_pred CEEecCCCccccCcccCCCCCc--cCeE-----CCcchHHHHHHHHHHC--------C--Cc-EEEEECcc---CHHHHH
Confidence 4889999999997 368999 9998 7899999999888653 2 11 45667776 566777
Q ss_pred HHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCcccccCCCcHHHHHHHhcCchHHHHHcCceEEEEEeCCC
Q 002690 368 SLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSN 447 (892)
Q Consensus 368 ~fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dGkilL~~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~~Gikyi~V~qVDN 447 (892)
+++.+...+|+ ++.+..| -.|.|-|+....+.. ..-+.+.|...|+
T Consensus 60 ~~~~~~~~~~~---~i~~~~~----------------------~~~~g~~~~l~~~~~---------~~~~~~lv~~~D~ 105 (220)
T cd06426 60 DYFGDGSKFGV---NISYVRE----------------------DKPLGTAGALSLLPE---------KPTDPFLVMNGDI 105 (220)
T ss_pred HHHCCccccCc---cEEEEEC----------------------CCCCcchHHHHHHHh---------hCCCCEEEEcCCE
Confidence 77775432332 2222111 023354555443332 2246778888886
Q ss_pred CccccChhHHHHHHhhhhcCCceeEEEeeecCCCCcCceEEEEeecCCCccccceEEEEecccCccCCCCCCCCCCCccc
Q 002690 448 VVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQA 527 (892)
Q Consensus 448 ~La~vDP~il~flG~~~~~~~d~~~ksvvRK~~~~EkVGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~~~~dg~l~S 527 (892)
+. ..| +-.++-.+...+.+..+.+ .+......-|++-. .+|+ |+++.|=+ . ..
T Consensus 106 i~-~~~--~~~l~~~~~~~~~~~~~~~--~~~~~~~~~g~~~~---d~~~------v~~~~ek~-~--------~~---- 158 (220)
T cd06426 106 LT-NLN--YEHLLDFHKENNADATVCV--REYEVQVPYGVVET---EGGR------ITSIEEKP-T--------HS---- 158 (220)
T ss_pred ee-ccC--HHHHHHHHHhcCCCEEEEE--EEcCCCCcceEEEE---CCCE------EEEEEECC-C--------CC----
Confidence 32 222 3345555555555555443 22223334566532 2344 34443210 0 00
Q ss_pred cCccceeeeEEeHHHHHhh
Q 002690 528 DFPANTNILYVDLASAELV 546 (892)
Q Consensus 528 ~F~aNInn~~fsL~fL~~v 546 (892)
...|++..+|+-+.++.+
T Consensus 159 -~~~~~Giy~~~~~~~~~i 176 (220)
T cd06426 159 -FLVNAGIYVLEPEVLDLI 176 (220)
T ss_pred -CeEEEEEEEEcHHHHhhc
Confidence 124889999998876543
No 35
>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=97.15 E-value=0.017 Score=66.40 Aligned_cols=201 Identities=9% Similarity=0.057 Sum_probs=118.2
Q ss_pred CcEEEEEecCCccccCCC---CCCCCCceeeccccCCCCCc-chHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCc
Q 002690 287 PELGEIYPLGGSADRLGL---VDHETGECLPAAMLPYCGRT-LLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNN 362 (892)
Q Consensus 287 ~kvAvVlLAGGlGTRLG~---~~PKgg~~lpV~l~p~sgkT-lLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~~~T 362 (892)
.++..|+||||.||||.- ..||. ++|+ .|++ ++++.++++... | .-.++|.|.. .
T Consensus 14 ~~~~aVILAaG~GtRl~pLT~~~PK~--llpv-----~gkp~lI~~~l~~l~~~--------G---i~~i~vv~~~---~ 72 (425)
T PRK00725 14 RDTLALILAGGRGSRLKELTDKRAKP--AVYF-----GGKFRIIDFALSNCINS--------G---IRRIGVLTQY---K 72 (425)
T ss_pred cceEEEEECCCCCCcchhhhCCCcce--eEEE-----CCEEEEhHHHHHHHHHC--------C---CCeEEEEecC---C
Confidence 478999999999999986 79999 9998 5886 999998887652 4 2356888887 7
Q ss_pred hHHHHHHHHHhCCCCCCCC----ceEEEecCCeeeEecCCCcccccCCCCcccccCCCcHH-HHHHHhcCchHHHHHcCc
Q 002690 363 HERITSLCERLRWFGRGQS----SFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAI-WKLAHDKGIFKWFHDNGR 437 (892)
Q Consensus 363 h~~T~~fle~n~yFGl~~~----qV~~F~Q~~vP~l~~~dGkilL~~~~~i~~~P~GHGdI-y~aL~~sGlLd~l~~~Gi 437 (892)
.+...++|.+. +++.+. .+.++.+. ........|-|-|+- +.++ +.+.+..-
T Consensus 73 ~~~i~~~~~~~--~~~~~~~~~~~i~i~~~~---------------~~~~~e~~~lGTa~al~~a~------~~l~~~~~ 129 (425)
T PRK00725 73 AHSLIRHIQRG--WSFFREELGEFVDLLPAQ---------------QRVDEENWYRGTADAVYQNL------DIIRRYDP 129 (425)
T ss_pred HHHHHHHHHhh--hcccccCCCCeEEEeCCc---------------ccCCCCccccCcHHHHHHHH------HHHHhcCC
Confidence 88888998752 232111 11111100 011112345676553 3333 23333334
Q ss_pred eEEEEEeCCCCccccChhHHHHHHhhhhcCCceeEEEeeecC-CCCcCceEEEEeecCCCccccceEEEEecccCccCCC
Q 002690 438 KGATVRQVSNVVAATDLTLLALAGIGLHHGKKLGFASCKRSS-GATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGIT 516 (892)
Q Consensus 438 kyi~V~qVDN~La~vDP~il~flG~~~~~~~d~~~ksvvRK~-~~~EkVGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~ 516 (892)
+++.|.+-|++ ...|. -.++-++...++++.+.+ .+.+ .....-|++.. ..+|+ ++++.|=|... .
T Consensus 130 d~~lVl~gD~l-~~~dl--~~ll~~h~~~~~~~tl~~-~~~~~~~~~~yG~v~~--d~~~~------V~~~~EKp~~~-~ 196 (425)
T PRK00725 130 KYVVILAGDHI-YKMDY--SRMLADHVESGADCTVAC-LEVPREEASAFGVMAV--DENDR------ITAFVEKPANP-P 196 (425)
T ss_pred CEEEEecCCeE-eccCH--HHHHHHHHHcCCCEEEEE-EecchhhcccceEEEE--CCCCC------EEEEEECCCCc-c
Confidence 68899999984 33443 356677777777776664 2221 12234678754 12444 34444422221 0
Q ss_pred CCCCCCCCccccCccceeeeEEeHHHHHhhhc
Q 002690 517 RGPFSSNGLQADFPANTNILYVDLASAELVGS 548 (892)
Q Consensus 517 ~~~~~dg~l~S~F~aNInn~~fsL~fL~~vl~ 548 (892)
. ...... .+-.|+..++|+-+.|.+.+.
T Consensus 197 ~--~~~~~~--~~l~n~GIYi~~~~~L~~~L~ 224 (425)
T PRK00725 197 A--MPGDPD--KSLASMGIYVFNADYLYELLE 224 (425)
T ss_pred c--cccCcc--ceEEEeeEEEEeHHHHHHHHH
Confidence 0 000100 134699999999999877664
No 36
>TIGR01207 rmlA glucose-1-phosphate thymidylyltransferase, short form. This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.
Probab=97.15 E-value=0.015 Score=63.87 Aligned_cols=176 Identities=19% Similarity=0.229 Sum_probs=103.8
Q ss_pred EEEecCCccccCCC---CCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHH
Q 002690 291 EIYPLGGSADRLGL---VDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (892)
Q Consensus 291 vVlLAGGlGTRLG~---~~PKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~~~Th~~T~ 367 (892)
.|+||||.||||.- ..||- ++|| .+|+++++.++.+... | .-.++|.|.. ...+..+
T Consensus 2 aIILAgG~GtRL~plT~~~pK~--Llpv-----~gkPmI~~~L~~l~~a--------G---i~~I~iv~~~--~~~~~~~ 61 (286)
T TIGR01207 2 GIILAGGSGTRLYPITRAVSKQ--LLPI-----YDKPMIYYPLSTLMLA--------G---IRDILIISTP--QDTPRFQ 61 (286)
T ss_pred EEEECCCCCccCCcccCCCCce--eeEE-----CCEEhHHHHHHHHHHC--------C---CCEEEEEecC--CcHHHHH
Confidence 47899999999974 88999 9999 6889999998887642 3 2345666665 3567778
Q ss_pred HHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCcccccCCCcHHHHHHHhcCchHHHHHcCceEEEEEeCCC
Q 002690 368 SLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSN 447 (892)
Q Consensus 368 ~fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dGkilL~~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~~Gikyi~V~qVDN 447 (892)
++|.....||+ ++.+..|. .|-|-|+-+....+ +.. -+-..+..-||
T Consensus 62 ~~lg~g~~~g~---~i~~~~q~----------------------~~~Gta~al~~a~~------~l~--~~~~~li~gD~ 108 (286)
T TIGR01207 62 QLLGDGSQWGV---NLSYAVQP----------------------SPDGLAQAFIIGED------FIG--GDPSALVLGDN 108 (286)
T ss_pred HHhccccccCc---eEEEEEcc----------------------CCCCHHHHHHHHHH------HhC--CCCEEEEECCE
Confidence 88877666775 34333332 35566554433221 221 13344557899
Q ss_pred CccccChhHHHHHHhhhhcCCceeEEEeeecCCCCcCceEEEEeecCCCccccceEEEEecccCccCCCCCCCCCCCccc
Q 002690 448 VVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQA 527 (892)
Q Consensus 448 ~La~vDP~il~flG~~~~~~~d~~~ksvvRK~~~~EkVGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~~~~dg~l~S 527 (892)
++...|-. .++-.+...+.++.+.+ .+...+ +.-|++.. ..+|+ ++++.|=|... . |
T Consensus 109 i~~~~~l~--~ll~~~~~~~~~~ti~~-~~v~~p-~~yGvv~~--d~~g~------V~~i~EKp~~~---------~--s 165 (286)
T TIGR01207 109 IFYGHDLS--DLLKRAAARESGATVFA-YQVSDP-ERYGVVEF--DSNGR------AISIEEKPAQP---------K--S 165 (286)
T ss_pred eccccCHH--HHHHHHHhcCCCcEEEE-EEccCH-HHCceEEE--CCCCe------EEEEEECCCCC---------C--C
Confidence 87555432 44555555555555443 333333 45677754 13455 33443322111 0 1
Q ss_pred cCccceeeeEEeHHHH
Q 002690 528 DFPANTNILYVDLASA 543 (892)
Q Consensus 528 ~F~aNInn~~fsL~fL 543 (892)
. -+|+..++|+-+.+
T Consensus 166 ~-~~~~GiYi~~~~i~ 180 (286)
T TIGR01207 166 N-YAVTGLYFYDNRVV 180 (286)
T ss_pred C-EEEEEEEEEchHHH
Confidence 1 25899999997654
No 37
>PLN02241 glucose-1-phosphate adenylyltransferase
Probab=97.14 E-value=0.016 Score=66.89 Aligned_cols=215 Identities=14% Similarity=0.140 Sum_probs=122.4
Q ss_pred CcEEEEEecCCccccCC---CCCCCCCceeeccccCCCCC-cchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCc
Q 002690 287 PELGEIYPLGGSADRLG---LVDHETGECLPAAMLPYCGR-TLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNN 362 (892)
Q Consensus 287 ~kvAvVlLAGGlGTRLG---~~~PKgg~~lpV~l~p~sgk-TlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~~~T 362 (892)
.++..|+||||.||||. ...||. ++|+ .|+ +++++.++.+... | .=-++|.|.. .
T Consensus 2 ~~~~aIIlA~G~gtRl~PlT~~~PK~--llpv-----~g~~plId~~L~~l~~~--------G---i~~i~iv~~~---~ 60 (436)
T PLN02241 2 KSVAAIILGGGAGTRLFPLTKRRAKP--AVPI-----GGNYRLIDIPMSNCINS--------G---INKIYVLTQF---N 60 (436)
T ss_pred CceEEEEEeCCCCCcchhhhcCCccc--ceEe-----CCcceEehHHHHHHHhC--------C---CCEEEEEecc---C
Confidence 36788999999999998 688999 9998 454 8999988887543 4 2235777776 7
Q ss_pred hHHHHHHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCcccccCCCcHHHHHHHhcCchHHHHHcCceEEEE
Q 002690 363 HERITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATV 442 (892)
Q Consensus 363 h~~T~~fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dGkilL~~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~~Gikyi~V 442 (892)
.+...++|++..+|+.... |.++.+..+... .. ..-...|.|.||-...... .+++...++-+++.+
T Consensus 61 ~~~i~~~l~~~~~~~~~~~----~~~~~~~i~~~~------q~-~~~~~~~lGt~~al~~~~~--~~~~~~~~~~~~~lv 127 (436)
T PLN02241 61 SASLNRHLSRAYNFGNGGN----FGDGFVEVLAAT------QT-PGEKGWFQGTADAVRQFLW--LFEDAKNKNVEEVLI 127 (436)
T ss_pred HHHHHHHHhccCCCCCCcc----cCCCCEEEcCCc------cc-CCCCccccCcHHHHHHHHH--HHHhcccCCCCEEEE
Confidence 7889999985433443111 111111111100 00 0011257888775543322 233222223578999
Q ss_pred EeCCCCccccChhHHHHHHhhhhcCCceeEEEeeecCC-CCcCceEEEEeecCCCccccceEEEEecccCccCCCCCCCC
Q 002690 443 RQVSNVVAATDLTLLALAGIGLHHGKKLGFASCKRSSG-ATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFS 521 (892)
Q Consensus 443 ~qVDN~La~vDP~il~flG~~~~~~~d~~~ksvvRK~~-~~EkVGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~~~~ 521 (892)
.+-|++ ...|. ..++-++.+.++++.+.+ .+... ....-|++.. ..+| .++++.|-|... ......
T Consensus 128 ~~gD~v-~~~dl--~~ll~~h~~~~a~~ti~~-~~v~~~~~~~ygvv~~--d~~~------~v~~~~Ekp~~~-~~~~~~ 194 (436)
T PLN02241 128 LSGDHL-YRMDY--MDFVQKHRESGADITIAC-LPVDESRASDFGLMKI--DDTG------RIIEFSEKPKGD-ELKAMQ 194 (436)
T ss_pred ecCCeE-EccCH--HHHHHHHHHcCCCEEEEE-EecchhhcCcceEEEE--CCCC------CEEEEEECCCCc-cccccc
Confidence 999985 44554 356677777777665543 33221 1245677754 1233 366777655331 000000
Q ss_pred -CCCc--------cc-cCccceeeeEEeHHHHHhhhc
Q 002690 522 -SNGL--------QA-DFPANTNILYVDLASAELVGS 548 (892)
Q Consensus 522 -dg~l--------~S-~F~aNInn~~fsL~fL~~vl~ 548 (892)
+.+. .. ..-.|+..++|+-+.+..+++
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~GIyi~~~~~l~~ll~ 231 (436)
T PLN02241 195 VDTTVLGLSPEEAKEKPYIASMGIYVFKKDVLLKLLR 231 (436)
T ss_pred ccccccccccccccccceEEEeEEEEEEHHHHHHHHH
Confidence 0000 00 122499999999998887765
No 38
>cd02508 ADP_Glucose_PP ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch. ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2.
Probab=97.12 E-value=0.0064 Score=62.18 Aligned_cols=137 Identities=12% Similarity=0.157 Sum_probs=85.0
Q ss_pred EEecCCccccCC---CCCCCCCceeeccccCCCCC-cchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHH
Q 002690 292 IYPLGGSADRLG---LVDHETGECLPAAMLPYCGR-TLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (892)
Q Consensus 292 VlLAGGlGTRLG---~~~PKgg~~lpV~l~p~sgk-TlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~~~Th~~T~ 367 (892)
|+||||.||||. ...||. ++|+ .|+ +++++.++.+... | .-.++|.|+. ..+...
T Consensus 2 vILAaG~gtRl~plt~~~pK~--llpv-----~g~~pli~~~l~~l~~~--------g---i~~iivv~~~---~~~~i~ 60 (200)
T cd02508 2 IILAGGEGTRLSPLTKKRAKP--AVPF-----GGRYRLIDFPLSNMVNS--------G---IRNVGVLTQY---KSRSLN 60 (200)
T ss_pred EEeCCCCCcccchhhcCCcce--eeEE-----CCeeeeHHHHHHHHHHC--------C---CCEEEEEeCC---ChHHHH
Confidence 789999999996 478999 9998 577 9999998887652 3 3467889988 678889
Q ss_pred HHHHHhCCCCCCCC--ceEEEecCCeeeEecCCCcccccCCCCcccccCCCcHHHHHHHhcCchHHHHHcCceEEEEEeC
Q 002690 368 SLCERLRWFGRGQS--SFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQV 445 (892)
Q Consensus 368 ~fle~n~yFGl~~~--qV~~F~Q~~vP~l~~~dGkilL~~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~~Gikyi~V~qV 445 (892)
++|.+...+|++.. .+.+.. .....-.-.|-|.|+-...... .+....-+.+.|...
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~Gta~al~~a~~-----~i~~~~~~~~lv~~g 119 (200)
T cd02508 61 DHLGSGKEWDLDRKNGGLFILP----------------PQQRKGGDWYRGTADAIYQNLD-----YIERSDPEYVLILSG 119 (200)
T ss_pred HHHhCCCcccCCCCCCCEEEeC----------------cccCCCCCcccCcHHHHHHHHH-----HHHhCCCCEEEEecC
Confidence 99987666665421 121110 0000012356676664433322 233333477888999
Q ss_pred CCCccccChhHHHHHHhhhhcCCceeEE
Q 002690 446 SNVVAATDLTLLALAGIGLHHGKKLGFA 473 (892)
Q Consensus 446 DN~La~vDP~il~flG~~~~~~~d~~~k 473 (892)
|++ ...|. -.++-.+..+++++.+.
T Consensus 120 D~v-~~~~~--~~~l~~~~~~~~~~t~~ 144 (200)
T cd02508 120 DHI-YNMDY--REMLDFHIESGADITVV 144 (200)
T ss_pred CEE-EecCH--HHHHHHHHHcCCCEEEE
Confidence 983 33333 24556555555444433
No 39
>cd02538 G1P_TT_short G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase. This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.
Probab=97.08 E-value=0.0099 Score=62.28 Aligned_cols=176 Identities=17% Similarity=0.136 Sum_probs=100.9
Q ss_pred EEEEecCCccccCCC---CCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHH
Q 002690 290 GEIYPLGGSADRLGL---VDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERI 366 (892)
Q Consensus 290 AvVlLAGGlGTRLG~---~~PKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~~~Th~~T 366 (892)
-.|+||||.||||+- ..||. ++|+ .++++++..++.+.+. | .-.++|.++. ...+..
T Consensus 2 ~~iIlAaG~gtRl~plt~~~pK~--llpv-----~~~pli~~~l~~l~~~--------g---i~~i~vv~~~--~~~~~~ 61 (240)
T cd02538 2 KGIILAGGSGTRLYPLTKVVSKQ--LLPV-----YDKPMIYYPLSTLMLA--------G---IREILIISTP--EDLPLF 61 (240)
T ss_pred eEEEEcCcCcccCCccccCCCce--eeEE-----CCEEhHHHHHHHHHHC--------C---CCEEEEEeCc--chHHHH
Confidence 368999999999975 78999 9999 5899999998877542 3 2356677776 345677
Q ss_pred HHHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCcccccCCCcH-HHHHHHhcCchHHHHHcCceEEEEEeC
Q 002690 367 TSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGA-IWKLAHDKGIFKWFHDNGRKGATVRQV 445 (892)
Q Consensus 367 ~~fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dGkilL~~~~~i~~~P~GHGd-Iy~aL~~sGlLd~l~~~Gikyi~V~qV 445 (892)
.++|.....+|+ +|.+-.| ..|.|-|+ ++.++. .+ + + +...|.+.
T Consensus 62 ~~~l~~~~~~~~---~i~~~~~----------------------~~~~G~~~al~~a~~---~~----~-~-~~~lv~~g 107 (240)
T cd02538 62 KELLGDGSDLGI---RITYAVQ----------------------PKPGGLAQAFIIGEE---FI----G-D-DPVCLILG 107 (240)
T ss_pred HHHHhcccccCc---eEEEeeC----------------------CCCCCHHHHHHHHHH---hc----C-C-CCEEEEEC
Confidence 888876555543 2211110 12445544 332221 12 1 1 44566678
Q ss_pred CCCccccChhHHHHHHhhhhcCCceeEEEeeecCCCCcCceEEEEeecCCCccccceEEEEecccCccCCCCCCCCCCCc
Q 002690 446 SNVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGL 525 (892)
Q Consensus 446 DN~La~vDP~il~flG~~~~~~~d~~~ksvvRK~~~~EkVGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~~~~dg~l 525 (892)
|+++...| +-.++-.+...+.++.+.+ .+... .+.-|++.. ..+|+ ++++.|=|... ..
T Consensus 108 D~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~g~v~~--d~~g~------v~~~~ekp~~~-------~~-- 166 (240)
T cd02538 108 DNIFYGQG--LSPILQRAAAQKEGATVFG-YEVND-PERYGVVEF--DENGR------VLSIEEKPKKP-------KS-- 166 (240)
T ss_pred CEEEccHH--HHHHHHHHHhcCCCcEEEE-EECCc-hhcCceEEe--cCCCc------EEEEEECCCCC-------CC--
Confidence 88754433 2245555555566666553 33232 234567653 13454 33443322111 00
Q ss_pred cccCccceeeeEEeHHHH
Q 002690 526 QADFPANTNILYVDLASA 543 (892)
Q Consensus 526 ~S~F~aNInn~~fsL~fL 543 (892)
...|++.++|+-+.+
T Consensus 167 ---~~~~~Giyi~~~~~l 181 (240)
T cd02538 167 ---NYAVTGLYFYDNDVF 181 (240)
T ss_pred ---CeEEEEEEEECHHHH
Confidence 124899999998766
No 40
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.
Probab=97.05 E-value=0.01 Score=67.66 Aligned_cols=61 Identities=16% Similarity=0.241 Sum_probs=48.1
Q ss_pred EEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHHHHH
Q 002690 291 EIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLC 370 (892)
Q Consensus 291 vVlLAGGlGTRLG~~~PKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~~~Th~~T~~fl 370 (892)
.|+||||.||||+...||- ++|+ .|+++++..++++... | ...++|.++. ..+.+.+++
T Consensus 3 aiIlAaG~g~R~~~~~pK~--l~~i-----~gkpli~~~l~~l~~~--------g---~~~iiiv~~~---~~~~i~~~~ 61 (451)
T TIGR01173 3 VVILAAGKGTRMKSDLPKV--LHPL-----AGKPMLEHVIDAARAL--------G---PQKIHVVYGH---GAEQVRKAL 61 (451)
T ss_pred EEEEcCCCCcccCCCCchh--hcee-----CCccHHHHHHHHHHhC--------C---CCeEEEEECC---CHHHHHHHh
Confidence 5788999999999888999 9998 6899999988877542 3 2356788887 456677777
Q ss_pred HH
Q 002690 371 ER 372 (892)
Q Consensus 371 e~ 372 (892)
.+
T Consensus 62 ~~ 63 (451)
T TIGR01173 62 AN 63 (451)
T ss_pred cC
Confidence 64
No 41
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase
Probab=96.96 E-value=0.035 Score=61.81 Aligned_cols=176 Identities=18% Similarity=0.184 Sum_probs=102.3
Q ss_pred EEEecCCccccCC---CCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHH
Q 002690 291 EIYPLGGSADRLG---LVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (892)
Q Consensus 291 vVlLAGGlGTRLG---~~~PKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~~~Th~~T~ 367 (892)
.|+||||.||||+ ...||. ++|+ .|++++++.++.+.+. | .-.++|+|+. ...+...
T Consensus 2 aiIlAaG~gtRl~plt~~~pK~--l~pv-----~g~pli~~~l~~l~~~--------g---i~~i~vv~~~--~~~~~i~ 61 (353)
T TIGR01208 2 ALILAAGKGTRLRPLTFTRPKQ--LIPV-----ANKPILQYAIEDLAEA--------G---ITDIGIVVGP--VTGEEIK 61 (353)
T ss_pred EEEECCcCcCccCccccCCCcc--ccEE-----CCEeHHHHHHHHHHHC--------C---CCEEEEEeCC--CCHHHHH
Confidence 4789999999997 488999 9998 6889999988877542 3 2356788887 4778888
Q ss_pred HHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCcccccCCCcHHHHHHHhcCchHHHHHcCceEEEEEeCCC
Q 002690 368 SLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSN 447 (892)
Q Consensus 368 ~fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dGkilL~~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~~Gikyi~V~qVDN 447 (892)
++|.+...||+ ++.+..|. .|.|.++-..+... .+. + +-+.+..-|+
T Consensus 62 ~~~~~~~~~~~---~~~~~~~~----------------------~~~G~~~al~~a~~-----~l~--~-~~~li~~gD~ 108 (353)
T TIGR01208 62 EIVGEGERFGA---KITYIVQG----------------------EPLGLAHAVYTARD-----FLG--D-DDFVVYLGDN 108 (353)
T ss_pred HHHhcccccCc---eEEEEECC----------------------CCCCHHHHHHHHHH-----hcC--C-CCEEEEECCe
Confidence 98887555554 33333231 24555543332221 121 1 2344556788
Q ss_pred CccccChhHHHHHHhhhhcCCceeEEEeeecCCCCcCceEEEEeecCCCccccceEEEEecccCccCCCCCCCCCCCccc
Q 002690 448 VVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQA 527 (892)
Q Consensus 448 ~La~vDP~il~flG~~~~~~~d~~~ksvvRK~~~~EkVGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~~~~dg~l~S 527 (892)
++ ..| +-.++-.+...+++..+.+ .+...+ ..-|++.. .+|. .++++.|-|... . +
T Consensus 109 ~~-~~~--l~~l~~~~~~~~~d~ti~~-~~~~~~-~~~g~~~~---~~~~-----~v~~~~ekp~~~-------~-~--- 164 (353)
T TIGR01208 109 LI-QDG--ISRFVKSFEEKDYDALILL-TKVRDP-TAFGVAVL---EDGK-----RILKLVEKPKEP-------P-S--- 164 (353)
T ss_pred ec-Ccc--HHHHHHHHHhcCCCcEEEE-EECCCh-hhCeEEEE---cCCC-----cEEEEEECCCCC-------C-c---
Confidence 65 333 3355666666677766554 343333 23466543 3332 233333322221 0 0
Q ss_pred cCccceeeeEEeHHHHH
Q 002690 528 DFPANTNILYVDLASAE 544 (892)
Q Consensus 528 ~F~aNInn~~fsL~fL~ 544 (892)
-..|+..++|+-.+++
T Consensus 165 -~~~~~Giy~~~~~l~~ 180 (353)
T TIGR01208 165 -NLAVVGLYMFRPLIFE 180 (353)
T ss_pred -cceEEEEEEECHHHHH
Confidence 1248999999985443
No 42
>cd06428 M1P_guanylylT_A_like_N N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase. N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repre
Probab=96.94 E-value=0.044 Score=58.23 Aligned_cols=182 Identities=12% Similarity=0.133 Sum_probs=104.1
Q ss_pred EEecCC--ccccCCC---CCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHH
Q 002690 292 IYPLGG--SADRLGL---VDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERI 366 (892)
Q Consensus 292 VlLAGG--lGTRLG~---~~PKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~~~Th~~T 366 (892)
|+|||| .||||.- ..||. ++|+ .|+++++..++.+..+ .| .--++|.+.. ..+..
T Consensus 2 iIla~G~~~GtRl~plt~~~PK~--llpv-----~g~plI~~~l~~l~~~-------~g---i~~i~iv~~~---~~~~i 61 (257)
T cd06428 2 VILVGGPQKGTRFRPLSLDVPKP--LFPV-----AGKPMIHHHIEACAKV-------PD---LKEVLLIGFY---PESVF 61 (257)
T ss_pred EEEccCCCCCcccCCccCCCCcc--cCeE-----CCeeHHHHHHHHHHhc-------CC---CcEEEEEecC---CHHHH
Confidence 677888 8999986 78999 9998 6889999988877653 13 1234566665 67788
Q ss_pred HHHHHHhC-CCCCCCCceEEEecCCeeeEecCCCcccccCCCCcccccCCCcHHHHHHHhcCchHHHHHcCceEEEEEeC
Q 002690 367 TSLCERLR-WFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQV 445 (892)
Q Consensus 367 ~~fle~n~-yFGl~~~qV~~F~Q~~vP~l~~~dGkilL~~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~~Gikyi~V~qV 445 (892)
.+++.+.. .+|+ .|.+..| ..|-|-|+-..... +.+....-+++.|.+.
T Consensus 62 ~~~l~~~~~~~~~---~i~~~~~----------------------~~~~Gt~~al~~a~-----~~l~~~~~~~~lv~~g 111 (257)
T cd06428 62 SDFISDAQQEFNV---PIRYLQE----------------------YKPLGTAGGLYHFR-----DQILAGNPSAFFVLNA 111 (257)
T ss_pred HHHHHhcccccCc---eEEEecC----------------------CccCCcHHHHHHHH-----HHhhccCCCCEEEEcC
Confidence 88887642 2332 2222111 12344444322221 2222223467889999
Q ss_pred CCCccccChhHHHHHHhhhhcCCceeEEEeeecC-CCCcCceEEEEeecCCCccccceEEEEecccCccCCCCCCCCCCC
Q 002690 446 SNVVAATDLTLLALAGIGLHHGKKLGFASCKRSS-GATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNG 524 (892)
Q Consensus 446 DN~La~vDP~il~flG~~~~~~~d~~~ksvvRK~-~~~EkVGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~~~~dg~ 524 (892)
|++ ..+|.. .++-++...++++.+.+ .+.. .....-|++... ..+|+ +.++.|=|... . +
T Consensus 112 D~~-~~~dl~--~~~~~h~~~~~~~tl~~-~~~~~~~~~~yg~v~~d-~~~g~------v~~~~Ekp~~~-----~---~ 172 (257)
T cd06428 112 DVC-CDFPLQ--ELLEFHKKHGASGTILG-TEASREQASNYGCIVED-PSTGE------VLHYVEKPETF-----V---S 172 (257)
T ss_pred Cee-cCCCHH--HHHHHHHHcCCCEEEEE-EEccccccccccEEEEe-CCCCe------EEEEEeCCCCc-----c---c
Confidence 987 344533 56677777777766553 3321 112345676430 12344 33444322211 0 0
Q ss_pred ccccCccceeeeEEeHHHHHhh
Q 002690 525 LQADFPANTNILYVDLASAELV 546 (892)
Q Consensus 525 l~S~F~aNInn~~fsL~fL~~v 546 (892)
...|+..++|+-+.+..+
T Consensus 173 ----~~~~~Giyi~~~~~~~~i 190 (257)
T cd06428 173 ----DLINCGVYLFSPEIFDTI 190 (257)
T ss_pred ----ceEEEEEEEECHHHHHHH
Confidence 236999999999877543
No 43
>TIGR02623 G1P_cyt_trans glucose-1-phosphate cytidylyltransferase. Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene.
Probab=96.89 E-value=0.066 Score=57.29 Aligned_cols=193 Identities=13% Similarity=0.127 Sum_probs=105.8
Q ss_pred EEEecCCccccCCC---CCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHH
Q 002690 291 EIYPLGGSADRLGL---VDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (892)
Q Consensus 291 vVlLAGGlGTRLG~---~~PKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~~~Th~~T~ 367 (892)
+|+||||.||||+- ..||. ++|+ .|+++++..++.+.+. | .--++|.++. ..+...
T Consensus 2 avilaaG~gtRl~~~t~~~pK~--llpv-----~g~pii~~~l~~l~~~--------g---i~~i~iv~~~---~~~~i~ 60 (254)
T TIGR02623 2 AVILAGGLGTRISEETHLRPKP--MVEI-----GGKPILWHIMKIYSHH--------G---INDFIICCGY---KGYVIK 60 (254)
T ss_pred EEEEcCccccccCccccCCCcc--eeEE-----CCEEHHHHHHHHHHHC--------C---CCEEEEEcCC---CHHHHH
Confidence 47789999999964 48999 9998 6899998877766542 3 2345666665 678888
Q ss_pred HHHHHhCCCCCCCCceEEEecCCeeeEecCCCccc-ccCCCCcccccCCCcHHHHHHHhcCchHHHHHcCceEEEEEeCC
Q 002690 368 SLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWL-VMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVS 446 (892)
Q Consensus 368 ~fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dGkil-L~~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~~Gikyi~V~qVD 446 (892)
++|.+...+|. ..++. ++++.+.... ...+.. +. ......|-|.|+-.....+ .+ +-+.+.|.+-|
T Consensus 61 ~~~~~~~~~~~-~~~~~-~~~~~~~~~~-~~~~~~~~~--~~~~~~~~gt~~al~~~~~--~i------~~e~flv~~gD 127 (254)
T TIGR02623 61 EYFANYFLHMS-DVTFH-MADNTMEVHH-KRVEPWRVT--LVDTGESTQTGGRLKRVRE--YL------DDEAFCFTYGD 127 (254)
T ss_pred HHHHhhhhccc-CeeEE-eccccccccc-ccCCcccee--eeecCCcCCcHHHHHHHHH--hc------CCCeEEEEeCC
Confidence 99876443321 12232 2233322221 111000 00 0011246777764433322 11 13567788999
Q ss_pred CCccccChhHHHHHHhhhhcCCceeEEEeeecCCCCcCceEEEEeecCCCccccceEEEEecccCccCCCCCCCCCCCcc
Q 002690 447 NVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQ 526 (892)
Q Consensus 447 N~La~vDP~il~flG~~~~~~~d~~~ksvvRK~~~~EkVGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~~~~dg~l~ 526 (892)
++ ...|.. .++-++...++++.+.. +.. ...-|++.. .+|+ +.++.|=| .. ..
T Consensus 128 ~i-~~~dl~--~~~~~h~~~~~d~tl~~-~~~---~~~yG~v~~---d~~~------V~~~~Ekp-~~-------~~--- 180 (254)
T TIGR02623 128 GV-ADIDIK--ALIAFHRKHGKKATVTA-VQP---PGRFGALDL---EGEQ------VTSFQEKP-LG-------DG--- 180 (254)
T ss_pred eE-ecCCHH--HHHHHHHHcCCCEEEEE-ecC---CCcccEEEE---CCCe------EEEEEeCC-CC-------CC---
Confidence 84 345543 55666666677765543 322 234577754 2343 33333312 11 01
Q ss_pred ccCccceeeeEEeHHHHHhhh
Q 002690 527 ADFPANTNILYVDLASAELVG 547 (892)
Q Consensus 527 S~F~aNInn~~fsL~fL~~vl 547 (892)
-..|+..++|+-+.+ +.+
T Consensus 181 --~~i~~Giyi~~~~il-~~l 198 (254)
T TIGR02623 181 --GWINGGFFVLNPSVL-DLI 198 (254)
T ss_pred --CeEEEEEEEEcHHHH-hhc
Confidence 125899999998766 444
No 44
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=96.88 E-value=0.025 Score=64.74 Aligned_cols=176 Identities=13% Similarity=0.077 Sum_probs=103.1
Q ss_pred EEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHHHHH
Q 002690 291 EIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLC 370 (892)
Q Consensus 291 vVlLAGGlGTRLG~~~PKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~~~Th~~T~~fl 370 (892)
.|+||||.||||+...||- ++|+ .|++++++.++.+... + -.++|.|+. ..+.+.+++
T Consensus 3 avIlA~G~gtRl~~~~pK~--l~~v-----~gkpli~~~l~~l~~~--------~----~~i~vv~~~---~~~~i~~~~ 60 (448)
T PRK14357 3 ALVLAAGKGTRMKSKIPKV--LHKI-----SGKPMINWVIDTAKKV--------A----QKVGVVLGH---EAELVKKLL 60 (448)
T ss_pred EEEECCCCCccCCCCCCce--eeEE-----CCeeHHHHHHHHHHhc--------C----CcEEEEeCC---CHHHHHHhc
Confidence 5889999999999888999 9998 6899999998876542 2 135666665 345555554
Q ss_pred HHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCcccccCCCcH-HHHHHHhcCchHHHHHcCceEEEEEeCCCCc
Q 002690 371 ERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGA-IWKLAHDKGIFKWFHDNGRKGATVRQVSNVV 449 (892)
Q Consensus 371 e~n~yFGl~~~qV~~F~Q~~vP~l~~~dGkilL~~~~~i~~~P~GHGd-Iy~aL~~sGlLd~l~~~Gikyi~V~qVDN~L 449 (892)
.. .+.++.|+ .|.|-++ ++.++. .++ .-+++++.+.|+++
T Consensus 61 ~~---------~~~~~~~~----------------------~~~g~~~ai~~a~~---~l~-----~~~~vlv~~gD~p~ 101 (448)
T PRK14357 61 PE---------WVKIFLQE----------------------EQLGTAHAVMCARD---FIE-----PGDDLLILYGDVPL 101 (448)
T ss_pred cc---------ccEEEecC----------------------CCCChHHHHHHHHH---hcC-----cCCeEEEEeCCccc
Confidence 31 12233331 1224333 433332 121 13689999999987
Q ss_pred cccChhHHHHHHhhhhcCCceeEEEeeecCCCCcCceEEEEeecCCCccccceEEEEecccCccCCCCCCCCCCCccccC
Q 002690 450 AATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQADF 529 (892)
Q Consensus 450 a~vDP~il~flG~~~~~~~d~~~ksvvRK~~~~EkVGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~~~~dg~l~S~F 529 (892)
...+ .+-.++-.+.+.++++.+.+ .+...+ ..-|++.. .+|+ +..+|...-+... . . .+
T Consensus 102 i~~~-~i~~l~~~~~~~~~d~ti~~-~~~~~~-~~~g~v~~---d~g~----v~~~e~~~~~~~~------~--~---~~ 160 (448)
T PRK14357 102 ISEN-TLKRLIEEHNRKGADVTILV-ADLEDP-TGYGRIIR---DGGK----YRIVEDKDAPEEE------K--K---IK 160 (448)
T ss_pred CCHH-HHHHHHHHHHhcCCeEEEEE-EEcCCC-CCcEEEEE---cCCe----EEEEECCCCChHH------h--c---Cc
Confidence 5431 12234555555666665553 333333 23566643 3666 5666643221110 0 0 13
Q ss_pred ccceeeeEEeHHHHHhhhc
Q 002690 530 PANTNILYVDLASAELVGS 548 (892)
Q Consensus 530 ~aNInn~~fsL~fL~~vl~ 548 (892)
-.|+..++|+-+.|.+.+.
T Consensus 161 ~~~~GiYv~~~~~l~~~~~ 179 (448)
T PRK14357 161 EINTGIYVFSGDFLLEVLP 179 (448)
T ss_pred EEEeEEEEEEHHHHHHHHH
Confidence 3599999999888877664
No 45
>cd06425 M1P_guanylylT_B_like_N N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation.
Probab=96.84 E-value=0.051 Score=56.75 Aligned_cols=179 Identities=15% Similarity=0.223 Sum_probs=105.1
Q ss_pred EEEecCCccccCCC---CCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHH
Q 002690 291 EIYPLGGSADRLGL---VDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (892)
Q Consensus 291 vVlLAGGlGTRLG~---~~PKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~~~Th~~T~ 367 (892)
.|+||||.||||+- ..||. ++|+ .|+++++..++.+... | .-.++|.|.. .++.+.
T Consensus 3 ~iIlAaG~g~R~~~lt~~~pK~--llpv-----~g~pli~~~l~~l~~~--------g---~~~v~iv~~~---~~~~~~ 61 (233)
T cd06425 3 ALILVGGYGTRLRPLTLTVPKP--LVEF-----CNKPMIEHQIEALAKA--------G---VKEIILAVNY---RPEDMV 61 (233)
T ss_pred EEEecCCCccccCccccCCCCc--cCeE-----CCcchHHHHHHHHHHC--------C---CcEEEEEeee---CHHHHH
Confidence 58899999999974 68999 9998 6889999999887653 3 2346788887 677888
Q ss_pred HHHHHhC-CCCCCCCceEEEecCCeeeEecCCCcccccCCCCcccccCCCcHHHHHHHhcCchHHHHHcCceEEEEEeCC
Q 002690 368 SLCERLR-WFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVS 446 (892)
Q Consensus 368 ~fle~n~-yFGl~~~qV~~F~Q~~vP~l~~~dGkilL~~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~~Gikyi~V~qVD 446 (892)
+++.+.. .+|+ ++.+ + ....|.|-|+-..... +.+ ...-+-+.|.+.|
T Consensus 62 ~~l~~~~~~~~~---~i~~-------~---------------~~~~~~G~~~al~~a~-----~~~-~~~~~~~lv~~~D 110 (233)
T cd06425 62 PFLKEYEKKLGI---KITF-------S---------------IETEPLGTAGPLALAR-----DLL-GDDDEPFFVLNSD 110 (233)
T ss_pred HHHhcccccCCe---EEEe-------c---------------cCCCCCccHHHHHHHH-----HHh-ccCCCCEEEEeCC
Confidence 8887531 1222 1111 0 0112556544332221 122 2211235666777
Q ss_pred CCccccChhHHHHHHhhhhcCCceeEEEeeecCCCCcCceEEEEeecC-CCccccceEEEEecccCccCCCCCCCCCCCc
Q 002690 447 NVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNL-DGKWAYGLSCIEYTEFDKFGITRGPFSSNGL 525 (892)
Q Consensus 447 N~La~vDP~il~flG~~~~~~~d~~~ksvvRK~~~~EkVGvL~~~~~~-dGk~~~~~~vVEYsEl~~~~~~~~~~~dg~l 525 (892)
++. ..| +-.++-++...+++..+.+ .+... ..+-|++.. .. +|+ ++++.|=|... . +
T Consensus 111 ~~~-~~~--~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~g~v~~--d~~~~~------v~~~~ekp~~~-------~-~- 168 (233)
T cd06425 111 VIC-DFP--LAELLDFHKKHGAEGTILV-TKVED-PSKYGVVVH--DENTGR------IERFVEKPKVF-------V-G- 168 (233)
T ss_pred Eee-CCC--HHHHHHHHHHcCCCEEEEE-EEcCC-ccccCeEEE--cCCCCE------EEEEEECCCCC-------C-C-
Confidence 643 333 2356677777777766664 44332 245677754 12 344 56665433321 0 0
Q ss_pred cccCccceeeeEEeHHHHHhh
Q 002690 526 QADFPANTNILYVDLASAELV 546 (892)
Q Consensus 526 ~S~F~aNInn~~fsL~fL~~v 546 (892)
.-.|+..++|+-+.++.+
T Consensus 169 ---~~~~~Giyi~~~~~l~~l 186 (233)
T cd06425 169 ---NKINAGIYILNPSVLDRI 186 (233)
T ss_pred ---CEEEEEEEEECHHHHHhc
Confidence 125899999998888554
No 46
>cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide. CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design.
Probab=96.83 E-value=0.12 Score=54.01 Aligned_cols=185 Identities=13% Similarity=0.146 Sum_probs=101.1
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHH
Q 002690 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (892)
Q Consensus 288 kvAvVlLAGGlGTRLG~~~PKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~~~Th~~T~ 367 (892)
++..|+||||.|+||| ||. ++|+ .|++++++.++++++.. | +.-+|..+. ++.+.
T Consensus 1 ~~~~iIlA~g~s~R~~---~K~--l~~i-----~gkpll~~~l~~l~~~~-------~----i~~ivvv~~----~~~i~ 55 (239)
T cd02517 1 KVIVVIPARYASSRLP---GKP--LADI-----AGKPMIQHVYERAKKAK-------G----LDEVVVATD----DERIA 55 (239)
T ss_pred CEEEEEecCCCCCCCC---CCC--Cccc-----CCcCHHHHHHHHHHhCC-------C----CCEEEEECC----cHHHH
Confidence 4678999999999997 798 9888 79999999999887531 2 222333332 36777
Q ss_pred HHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCcccccCCCcHHHHHHHhcCchHHHHHcCceEEEEEeCCC
Q 002690 368 SLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSN 447 (892)
Q Consensus 368 ~fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dGkilL~~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~~Gikyi~V~qVDN 447 (892)
+++.+ +| +.+..+ . ...+.|.|++..++.. + ....+++.+.+.|+
T Consensus 56 ~~~~~---~~-----~~~~~~--------~------------~~~~~gt~~~~~~~~~------~-~~~~d~vlv~~gD~ 100 (239)
T cd02517 56 DAVES---FG-----GKVVMT--------S------------PDHPSGTDRIAEVAEK------L-DADDDIVVNVQGDE 100 (239)
T ss_pred HHHHH---cC-----CEEEEc--------C------------cccCchhHHHHHHHHh------c-CCCCCEEEEecCCC
Confidence 77764 22 111111 0 0124566666665532 1 12247899999999
Q ss_pred CccccChhHHHHHHhhhhc-CCceeEEEeeecCCCC----cC-ceEEEEeecCCCccccceEEEEecccCccCCCCCCCC
Q 002690 448 VVAATDLTLLALAGIGLHH-GKKLGFASCKRSSGAT----EG-INVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFS 521 (892)
Q Consensus 448 ~La~vDP~il~flG~~~~~-~~d~~~ksvvRK~~~~----Ek-VGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~~~~ 521 (892)
++...+ .+-.++-.+... +.++.+.+ ++...+. .+ .+++.. .||+ +++..+-+... +.+..
T Consensus 101 Pli~~~-~l~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~---~~~~------v~~~~~~~~~~--~~~~~ 167 (239)
T cd02517 101 PLIPPE-MIDQVVAALKDDPGVDMATLA-TPISDEEELFNPNVVKVVLD---KDGY------ALYFSRSPIPY--PRDSS 167 (239)
T ss_pred CCCCHH-HHHHHHHHHHhCCCCCEEEEE-EEcCCHHHccCCCCCEEEEC---CCCC------EEEecCCCCCC--CCCCC
Confidence 887651 111233333233 34444443 3322222 22 345532 4554 34555422110 01111
Q ss_pred CCCccccCccceeeeEEeHHHHHhhhc
Q 002690 522 SNGLQADFPANTNILYVDLASAELVGS 548 (892)
Q Consensus 522 dg~l~S~F~aNInn~~fsL~fL~~vl~ 548 (892)
+.. + .-.|+..+.|+-+.++.+.+
T Consensus 168 ~~~--~-~~~~~Giy~~~~~~~~~~~~ 191 (239)
T cd02517 168 EDF--P-YYKHIGIYAYRRDFLLRFAA 191 (239)
T ss_pred CCC--c-eeEEEEEEEECHHHHHHHHh
Confidence 101 0 12499999999999887654
No 47
>PRK10122 GalU regulator GalF; Provisional
Probab=96.76 E-value=0.047 Score=60.19 Aligned_cols=63 Identities=14% Similarity=0.349 Sum_probs=51.8
Q ss_pred cEEEEEecCCccccCC---CCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchH
Q 002690 288 ELGEIYPLGGSADRLG---LVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHE 364 (892)
Q Consensus 288 kvAvVlLAGGlGTRLG---~~~PKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~~~Th~ 364 (892)
++.+|++|||.||||. ..-||- ++|| .||+++++.++.+... | .--++|+|.. ..+
T Consensus 3 ~mkavIlAaG~GtRl~PlT~~~PK~--llpi-----~gkpiI~~~l~~l~~~--------G---i~~i~iv~~~---~~~ 61 (297)
T PRK10122 3 NLKAVIPVAGLGMHMLPATKAIPKE--MLPI-----VDKPMIQYIVDEIVAA--------G---IKEIVLVTHA---SKN 61 (297)
T ss_pred ceEEEEECCcCCcccCcccCCCCce--eeEE-----CCEEHHHHHHHHHHHC--------C---CCEEEEEcCC---ChH
Confidence 5778999999999998 578999 9998 6889999999888663 4 3356788876 778
Q ss_pred HHHHHHH
Q 002690 365 RITSLCE 371 (892)
Q Consensus 365 ~T~~fle 371 (892)
...++|.
T Consensus 62 ~i~~~~~ 68 (297)
T PRK10122 62 AVENHFD 68 (297)
T ss_pred HHHHHHh
Confidence 8888886
No 48
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase. This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.
Probab=96.76 E-value=0.042 Score=61.20 Aligned_cols=196 Identities=12% Similarity=0.112 Sum_probs=107.6
Q ss_pred EEecCCccccCCC---CCCCCCceeeccccCCCCC-cchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHH
Q 002690 292 IYPLGGSADRLGL---VDHETGECLPAAMLPYCGR-TLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (892)
Q Consensus 292 VlLAGGlGTRLG~---~~PKgg~~lpV~l~p~sgk-TlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~~~Th~~T~ 367 (892)
|+||||.||||+- +.||. ++|+ .|+ +++++.++.+... | .-.++|.|.. -.+...
T Consensus 2 iILAaG~gtRl~plt~~~pK~--llpv-----~g~~pli~~~l~~l~~~--------g---i~~i~iv~~~---~~~~i~ 60 (361)
T TIGR02091 2 MVLAGGRGSRLSPLTKRRAKP--AVPF-----GGKYRIIDFPLSNCINS--------G---IRRIGVLTQY---KSHSLN 60 (361)
T ss_pred EEeCCCCCCccchhhhCCccc--ccee-----cceeeEeeehhhhhhhc--------C---CceEEEEecc---ChHHHH
Confidence 7899999999983 68999 9998 578 7999998887653 3 2356888887 566788
Q ss_pred HHHHHhCCCCCCC---CceEEEecCCeeeEecCCCcccccCCCCcccccCCCcH-HHHHHHhcCchHHHHHcCceEEEEE
Q 002690 368 SLCERLRWFGRGQ---SSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGA-IWKLAHDKGIFKWFHDNGRKGATVR 443 (892)
Q Consensus 368 ~fle~n~yFGl~~---~qV~~F~Q~~vP~l~~~dGkilL~~~~~i~~~P~GHGd-Iy~aL~~sGlLd~l~~~Gikyi~V~ 443 (892)
++|.+. +++.. ..+.++ |.. ....-...|.|.|+ ++.++. .+....-+++.|.
T Consensus 61 ~~~~~~--~~~~~~~~~~~~~~-~~~--------------~~~~~~~~~~Gt~~al~~a~~------~~~~~~~~~~lv~ 117 (361)
T TIGR02091 61 RHIQRG--WDFDGFIDGFVTLL-PAQ--------------QRESGTDWYQGTADAVYQNLD------LIEDYDPEYVLIL 117 (361)
T ss_pred HHHHhc--cCccCccCCCEEEe-CCc--------------ccCCCCccccCcHHHHHHHHH------HHHhcCCCEEEEe
Confidence 888752 33221 112111 000 00011223467655 333332 2222234678888
Q ss_pred eCCCCccccChhHHHHHHhhhhcCCceeEEEeeecCC-CCcCceEEEEeecCCCccccceEEEEecccCccCCCCCCCCC
Q 002690 444 QVSNVVAATDLTLLALAGIGLHHGKKLGFASCKRSSG-ATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSS 522 (892)
Q Consensus 444 qVDN~La~vDP~il~flG~~~~~~~d~~~ksvvRK~~-~~EkVGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~~~~d 522 (892)
+-|++ ...| +..++-.+..++++..+.+ .+.+. .....|++.. ..+|+ +.++.|=|... .....+
T Consensus 118 ~gD~l-~~~~--l~~~l~~~~~~~~~~ti~~-~~~~~~~~~~~g~v~~--d~~~~------v~~~~ekp~~~--~~~~~~ 183 (361)
T TIGR02091 118 SGDHI-YKMD--YEKMLDYHIESGADVTIAC-IPVPRKEASRFGVMQV--DEDGR------IVDFEEKPANP--PSIPGM 183 (361)
T ss_pred cCCEE-EcCC--HHHHHHHHHHcCCCEEEEE-EecChHhcccccEEEE--CCCCC------EEEEEECCCCc--cccccc
Confidence 99984 3333 3344555555555544443 33221 2234677754 12343 44555432111 000000
Q ss_pred CCccccCccceeeeEEeHHHHHhhhc
Q 002690 523 NGLQADFPANTNILYVDLASAELVGS 548 (892)
Q Consensus 523 g~l~S~F~aNInn~~fsL~fL~~vl~ 548 (892)
.. .+..|+..++|+-+.+.+.+.
T Consensus 184 -~~--~~~~~~Giyi~~~~~l~~~l~ 206 (361)
T TIGR02091 184 -PD--FALASMGIYIFDKDVLKELLE 206 (361)
T ss_pred -cc--ccEEeeeEEEEcHHHHHHHHH
Confidence 11 134699999999998876654
No 49
>TIGR00454 conserved hypothetical protein TIGR00454. At this time this gene appears to be present only in Archea
Probab=96.67 E-value=0.0027 Score=65.11 Aligned_cols=61 Identities=21% Similarity=0.402 Sum_probs=48.4
Q ss_pred EEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHHHH
Q 002690 290 GEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSL 369 (892)
Q Consensus 290 AvVlLAGGlGTRLG~~~PKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~~~Th~~T~~f 369 (892)
..|+||||.|||||. .||. ++++ .|++++++.++.+... + .-.+++-|+. .++.|..+
T Consensus 2 ~aIILAgG~gsRmg~-~~K~--Ll~i-----~GkplI~~vi~~l~~~--------~---i~~I~Vv~~~---~~~~~~~~ 59 (183)
T TIGR00454 2 DALIMAGGKGTRLGG-VEKP--LIEV-----CGRCLIDHVLSPLLKS--------K---VNNIIIATSP---HTPKTEEY 59 (183)
T ss_pred eEEEECCccCccCCC-CCce--EeEE-----CCEEHHHHHHHHHHhC--------C---CCEEEEEeCC---CHHHHHHH
Confidence 458999999999985 7899 9998 7999999999888653 1 1246777887 67788888
Q ss_pred HHH
Q 002690 370 CER 372 (892)
Q Consensus 370 le~ 372 (892)
+++
T Consensus 60 l~~ 62 (183)
T TIGR00454 60 INS 62 (183)
T ss_pred Hhh
Confidence 875
No 50
>cd02524 G1P_cytidylyltransferase G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose. Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity.
Probab=96.66 E-value=0.086 Score=55.97 Aligned_cols=190 Identities=12% Similarity=0.095 Sum_probs=103.0
Q ss_pred EEEecCCccccCC---CCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHH
Q 002690 291 EIYPLGGSADRLG---LVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (892)
Q Consensus 291 vVlLAGGlGTRLG---~~~PKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~~~Th~~T~ 367 (892)
+|+||||.||||. ...||. ++|+ .|+++++..++.+... | .-.++|-++. ..+.+.
T Consensus 1 aiilaaG~g~Rl~plt~~~pK~--llpv-----~~~p~i~~~~~~~~~~--------g---i~~i~iv~~~---~~~~i~ 59 (253)
T cd02524 1 VVILAGGLGTRLSEETELKPKP--MVEI-----GGRPILWHIMKIYSHY--------G---HNDFILCLGY---KGHVIK 59 (253)
T ss_pred CEEEecCCccccCCccCCCCce--EEEE-----CCEEHHHHHHHHHHhC--------C---CceEEEECCC---CHHHHH
Confidence 3789999999997 478999 9998 6889998766666442 3 2346777776 678899
Q ss_pred HHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCc----ccccCCCcH-HHHHHHhcCchHHHHHcCceEEEE
Q 002690 368 SLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAP----VCKPGGHGA-IWKLAHDKGIFKWFHDNGRKGATV 442 (892)
Q Consensus 368 ~fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dGkilL~~~~~i----~~~P~GHGd-Iy~aL~~sGlLd~l~~~Gikyi~V 442 (892)
+++++...||. ++.+-.|..--.+...+ .+++.+ ...|-|.|+ ++.++. .+ ..+ +++.+
T Consensus 60 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~t~~al~~a~~------~~-~~~-~~~lv 123 (253)
T cd02524 60 EYFLNYFLHNS---DVTIDLGTNRIELHNSD-----IEDWKVTLVDTGLNTMTGGRLKRVRR------YL-GDD-ETFML 123 (253)
T ss_pred HHHHhhhhhcC---ceeEeecccceeeeccc-----ccccceeecccCcccccHHHHHHHHH------hc-CCC-CeEEE
Confidence 99988665553 22221111000000000 001111 122455554 333331 11 111 78999
Q ss_pred EeCCCCccccChhHHHHHHhhhhcCCceeEEEeeecCCCCcCceEEEEeecCCCccccceEEEEecccCccCCCCCCCCC
Q 002690 443 RQVSNVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSS 522 (892)
Q Consensus 443 ~qVDN~La~vDP~il~flG~~~~~~~d~~~ksvvRK~~~~EkVGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~~~~d 522 (892)
.+-|++. ..|- -.++-++...++++.+.. ++ +...-|++.. ..+|+ |+++.+=+...
T Consensus 124 ~~gD~i~-~~dl--~~ll~~h~~~~~~~tl~~-~~---~~~~~g~v~~--d~~g~------V~~~~ekp~~~-------- 180 (253)
T cd02524 124 TYGDGVS-DVNI--NALIEFHRSHGKLATVTA-VH---PPGRFGELDL--DDDGQ------VTSFTEKPQGD-------- 180 (253)
T ss_pred EcCCEEE-CCCH--HHHHHHHHHcCCCEEEEE-ec---CCCcccEEEE--CCCCC------EEEEEECCCCC--------
Confidence 9999864 3443 244555556666665543 33 2234566643 13455 33443321110
Q ss_pred CCccccCccceeeeEEeHHHHHh
Q 002690 523 NGLQADFPANTNILYVDLASAEL 545 (892)
Q Consensus 523 g~l~S~F~aNInn~~fsL~fL~~ 545 (892)
. -..|+..++|+-+.++.
T Consensus 181 ~-----~~i~~Giyi~~~~l~~~ 198 (253)
T cd02524 181 G-----GWINGGFFVLEPEVFDY 198 (253)
T ss_pred C-----ceEEEEEEEECHHHHHh
Confidence 0 11478888988766533
No 51
>PRK13385 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional
Probab=96.60 E-value=0.0031 Score=66.01 Aligned_cols=65 Identities=15% Similarity=0.276 Sum_probs=49.3
Q ss_pred EEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHHH
Q 002690 289 LGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITS 368 (892)
Q Consensus 289 vAvVlLAGGlGTRLG~~~PKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~~~Th~~T~~ 368 (892)
++.|+||||.|+|||.+.||- ++++ .|++++++.+++++... ..-.++|.|++ .......+
T Consensus 3 ~~~iIlAaG~g~R~g~~~~K~--l~~l-----~gkpll~~~i~~~~~~~----------~~~~ivVv~~~--~~~~~~~~ 63 (230)
T PRK13385 3 YELIFLAAGQGKRMNAPLNKM--WLDL-----VGEPIFIHALRPFLADN----------RCSKIIIVTQA--QERKHVQD 63 (230)
T ss_pred eEEEEECCeeccccCCCCCcc--eeEE-----CCeEHHHHHHHHHHcCC----------CCCEEEEEeCh--hhHHHHHH
Confidence 688999999999999888999 9998 79999999998876532 12356677766 34455556
Q ss_pred HHHH
Q 002690 369 LCER 372 (892)
Q Consensus 369 fle~ 372 (892)
++++
T Consensus 64 ~~~~ 67 (230)
T PRK13385 64 LMKQ 67 (230)
T ss_pred HHHh
Confidence 6665
No 52
>PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=96.56 E-value=0.14 Score=53.57 Aligned_cols=103 Identities=16% Similarity=0.179 Sum_probs=66.3
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHH
Q 002690 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (892)
Q Consensus 288 kvAvVlLAGGlGTRLG~~~PKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~~~Th~~T~ 367 (892)
+++.|+||||.++||+ .|- ++|+ .|++++++.++++.+.. + .-.++|-| . ++.+.
T Consensus 2 ~~~aiIlA~g~s~R~~---~K~--l~~i-----~GkPli~~~i~~l~~~~-------~---~~~ivv~t-~----~~~i~ 56 (238)
T PRK13368 2 KVVVVIPARYGSSRLP---GKP--LLDI-----LGKPMIQHVYERAAQAA-------G---VEEVYVAT-D----DQRIE 56 (238)
T ss_pred cEEEEEecCCCCCCCC---CCc--cCcc-----CCcCHHHHHHHHHHhcC-------C---CCeEEEEC-C----hHHHH
Confidence 4678999999999996 488 8888 79999999998876631 1 12334433 2 36788
Q ss_pred HHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCcccccCCCcHHHHHHHhcCchHHHHHcCceEEEEEeCCC
Q 002690 368 SLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSN 447 (892)
Q Consensus 368 ~fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dGkilL~~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~~Gikyi~V~qVDN 447 (892)
+++++ +|. .+ +.+. + ..+.|.+++..++.. .+-+++.+.+.|+
T Consensus 57 ~~~~~---~~~---~v--~~~~--------~------------~~~~g~~~~~~a~~~---------~~~d~~lv~~~D~ 99 (238)
T PRK13368 57 DAVEA---FGG---KV--VMTS--------D------------DHLSGTDRLAEVMLK---------IEADIYINVQGDE 99 (238)
T ss_pred HHHHH---cCC---eE--EecC--------c------------cCCCccHHHHHHHHh---------CCCCEEEEEcCCc
Confidence 88875 332 11 1110 0 113455555544322 1567899999999
Q ss_pred Ccccc
Q 002690 448 VVAAT 452 (892)
Q Consensus 448 ~La~v 452 (892)
++...
T Consensus 100 P~i~~ 104 (238)
T PRK13368 100 PMIRP 104 (238)
T ss_pred CcCCH
Confidence 98765
No 53
>cd04198 eIF-2B_gamma_N The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=96.42 E-value=0.041 Score=57.11 Aligned_cols=129 Identities=16% Similarity=0.185 Sum_probs=77.1
Q ss_pred EEEecCCccccCC---CCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHH
Q 002690 291 EIYPLGGSADRLG---LVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (892)
Q Consensus 291 vVlLAGGlGTRLG---~~~PKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~~~Th~~T~ 367 (892)
.|+||||.|+||+ ...||. ++|+ .|++++++.++.+.+. | .-.++|.+.. .-.+.+.
T Consensus 3 aVILAgG~g~R~~plt~~~pK~--Llpv-----~g~pli~~~l~~l~~~--------g---~~~iivv~~~--~~~~~i~ 62 (214)
T cd04198 3 AVILAGGGGSRLYPLTDNIPKA--LLPV-----ANKPMIWYPLDWLEKA--------G---FEDVIVVVPE--EEQAEIS 62 (214)
T ss_pred EEEEeCCCCCcCCccccCCCcc--cCEE-----CCeeHHHHHHHHHHHC--------C---CCeEEEEECH--HHHHHHH
Confidence 4669999999998 578999 9998 6899999988887652 3 2245677775 2345678
Q ss_pred HHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCcccccCCCcHHHHHHHhcCchHHHHHcCceEEEEEeCCC
Q 002690 368 SLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSN 447 (892)
Q Consensus 368 ~fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dGkilL~~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~~Gikyi~V~qVDN 447 (892)
+++++..+ ......... .+ ....+-|-|+..+...+. + .+.+.|.+.|.
T Consensus 63 ~~l~~~~~-~~~~~~~~~-------~~--------------~~~~~~gt~~al~~~~~~-i--------~~d~lv~~~D~ 111 (214)
T cd04198 63 TYLRSFPL-NLKQKLDEV-------TI--------------VLDEDMGTADSLRHIRKK-I--------KKDFLVLSCDL 111 (214)
T ss_pred HHHHhccc-ccCcceeEE-------Ee--------------cCCCCcChHHHHHHHHhh-c--------CCCEEEEeCcc
Confidence 88876421 000000000 00 012467888877776653 1 24466677774
Q ss_pred CccccChhHHHHHHhhhhcCCceeEE
Q 002690 448 VVAATDLTLLALAGIGLHHGKKLGFA 473 (892)
Q Consensus 448 ~La~vDP~il~flG~~~~~~~d~~~k 473 (892)
+ ...|. ..++-.+...++.+.+.
T Consensus 112 i-~~~~l--~~~l~~h~~~~~~~t~~ 134 (214)
T cd04198 112 I-TDLPL--IELVDLHRSHDASLTVL 134 (214)
T ss_pred c-cccCH--HHHHHHHhccCCcEEEE
Confidence 3 33333 24555555566555554
No 54
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=96.41 E-value=0.066 Score=61.76 Aligned_cols=179 Identities=14% Similarity=0.145 Sum_probs=100.9
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHH
Q 002690 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (892)
Q Consensus 288 kvAvVlLAGGlGTRLG~~~PKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~~~Th~~T~ 367 (892)
++..|+||||.||||+...||- ++|+ .|+++++..++++.+. | .-.+++.++. ..+...
T Consensus 5 ~~~aiIlAaG~gtRl~~~~pK~--l~~i-----~gkpli~~~i~~l~~~--------g---i~~i~vv~~~---~~~~i~ 63 (456)
T PRK09451 5 AMSVVILAAGKGTRMYSDLPKV--LHTL-----AGKPMVQHVIDAANEL--------G---AQHVHLVYGH---GGDLLK 63 (456)
T ss_pred CceEEEEcCCCCCcCCCCCChh--ccee-----CChhHHHHHHHHHHhc--------C---CCcEEEEECC---CHHHHH
Confidence 5778999999999999888999 9998 6899999988877442 3 2356677776 445555
Q ss_pred HHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCcccccCCCcH-HHHHHHhcCchHHHHHcCceEEEEEeCC
Q 002690 368 SLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGA-IWKLAHDKGIFKWFHDNGRKGATVRQVS 446 (892)
Q Consensus 368 ~fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dGkilL~~~~~i~~~P~GHGd-Iy~aL~~sGlLd~l~~~Gikyi~V~qVD 446 (892)
+++.. ..+.+..|+ .+.|-|+ ++.++. .+ . .-+++.|...|
T Consensus 64 ~~~~~--------~~~~~i~~~----------------------~~~Gt~~al~~a~~------~l-~-~~~~vlV~~gD 105 (456)
T PRK09451 64 QTLAD--------EPLNWVLQA----------------------EQLGTGHAMQQAAP------FF-A-DDEDILMLYGD 105 (456)
T ss_pred Hhhcc--------CCcEEEECC----------------------CCCCcHHHHHHHHH------hh-c-cCCcEEEEeCC
Confidence 55532 122221111 2445444 444332 12 1 23689999999
Q ss_pred CCccccChhHHHHHHhhhhcCCceeEEEeeecCCCCcCceEEEEeecCCCccccceEEEEecccCccCCCCCCCCCCCcc
Q 002690 447 NVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQ 526 (892)
Q Consensus 447 N~La~vDP~il~flG~~~~~~~d~~~ksvvRK~~~~EkVGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~~~~dg~l~ 526 (892)
.++...+ .+-.++-... .....+.+ .+-..+ ..-|++.. .+|+ -..++|....++. ...
T Consensus 106 ~P~i~~~-~i~~l~~~~~--~~~~~i~~-~~~~~~-~~yG~v~~---~~g~---V~~~~EKp~~~~~----------~~~ 164 (456)
T PRK09451 106 VPLISVE-TLQRLRDAKP--QGGIGLLT-VKLDNP-TGYGRITR---ENGK---VVGIVEQKDATDE----------QRQ 164 (456)
T ss_pred cccCCHH-HHHHHHHHhh--cCCEEEEE-EEcCCC-CCceEEEe---cCCe---EEEEEECCCCChH----------Hhh
Confidence 9875531 1222333322 22233332 322233 23566543 4555 1344443322111 000
Q ss_pred ccCc-cceeeeEEeHHHHHhhhc
Q 002690 527 ADFP-ANTNILYVDLASAELVGS 548 (892)
Q Consensus 527 S~F~-aNInn~~fsL~fL~~vl~ 548 (892)
.. .|+..++|+-+.|.+.++
T Consensus 165 --~~~~~~GiYi~~~~~l~~~l~ 185 (456)
T PRK09451 165 --IQEINTGILVANGADLKRWLA 185 (456)
T ss_pred --ccEEEEEEEEEEHHHHHHHHH
Confidence 12 489999999888877665
No 55
>TIGR01099 galU UTP-glucose-1-phosphate uridylyltransferase. Built to distinquish between the highly similar genes galU and galF
Probab=96.38 E-value=0.13 Score=54.58 Aligned_cols=61 Identities=18% Similarity=0.316 Sum_probs=48.4
Q ss_pred EEEecCCccccCCC---CCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHH
Q 002690 291 EIYPLGGSADRLGL---VDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (892)
Q Consensus 291 vVlLAGGlGTRLG~---~~PKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~~~Th~~T~ 367 (892)
+|+||||.||||+- ..||. ++|+ .|++++++.++.+... | .-.++|+|.. ..+...
T Consensus 3 avIlAaG~gtRl~plt~~~pK~--llpi-----~g~pli~~~l~~l~~~--------g---i~~v~iv~~~---~~~~i~ 61 (260)
T TIGR01099 3 AVIPAAGLGTRFLPATKAIPKE--MLPI-----VDKPLIQYVVEEAVEA--------G---IEDILIVTGR---GKRAIE 61 (260)
T ss_pred EEEEcccCcccCCCcccCCCce--eEEE-----CCEEHHHHHHHHHHhC--------C---CCEEEEEeCC---cHHHHH
Confidence 58999999999974 78999 9998 5889999988877542 3 2257888887 677788
Q ss_pred HHHHH
Q 002690 368 SLCER 372 (892)
Q Consensus 368 ~fle~ 372 (892)
++|.+
T Consensus 62 ~~~~~ 66 (260)
T TIGR01099 62 DHFDT 66 (260)
T ss_pred HHhcc
Confidence 88863
No 56
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=96.37 E-value=0.11 Score=59.64 Aligned_cols=182 Identities=13% Similarity=0.139 Sum_probs=99.6
Q ss_pred EEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHHH
Q 002690 289 LGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITS 368 (892)
Q Consensus 289 vAvVlLAGGlGTRLG~~~PKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~~~Th~~T~~ 368 (892)
...|+||||.||||+...||. ++|+ .|++++++.++++... | .-.++|.++. ..+...+
T Consensus 3 ~~avIlAaG~g~Rl~~~~pK~--ll~i-----~Gkpli~~~l~~l~~~--------g---i~~iivvv~~---~~~~i~~ 61 (458)
T PRK14354 3 RYAIILAAGKGTRMKSKLPKV--LHKV-----CGKPMVEHVVDSVKKA--------G---IDKIVTVVGH---GAEEVKE 61 (458)
T ss_pred ceEEEEeCCCCcccCCCCChh--hCEe-----CCccHHHHHHHHHHhC--------C---CCeEEEEeCC---CHHHHHH
Confidence 457889999999999888999 9998 6899999999887542 3 2245666666 4555555
Q ss_pred HHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCcccccCCCcH-HHHHHHhcCchHHHHHcCceEEEEEeCCC
Q 002690 369 LCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGA-IWKLAHDKGIFKWFHDNGRKGATVRQVSN 447 (892)
Q Consensus 369 fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dGkilL~~~~~i~~~P~GHGd-Iy~aL~~sGlLd~l~~~Gikyi~V~qVDN 447 (892)
++.+ .+.+. ++. .+.|.++ ++.++. .+. ..-+++++.+.|+
T Consensus 62 ~~~~---------~~~~~----------------~~~------~~~g~~~al~~a~~------~l~-~~~d~vlv~~~D~ 103 (458)
T PRK14354 62 VLGD---------RSEFA----------------LQE------EQLGTGHAVMQAEE------FLA-DKEGTTLVICGDT 103 (458)
T ss_pred HhcC---------CcEEE----------------EcC------CCCCHHHHHHHHHH------Hhc-ccCCeEEEEECCc
Confidence 5432 11111 100 1334433 443332 221 1126899999999
Q ss_pred CccccChhHHHHHHhhhhcCCceeEEEeeecCCCCcCceEEEEeecCCCccccceEEEEecccCccCCCCCCCCCCCccc
Q 002690 448 VVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQA 527 (892)
Q Consensus 448 ~La~vDP~il~flG~~~~~~~d~~~ksvvRK~~~~EkVGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~~~~dg~l~S 527 (892)
++...+ .+-.++-.....+++..+.+ .+...+ ...|++.. ..+|+ ....+|.....+.. ..
T Consensus 104 p~i~~~-~l~~li~~~~~~~~~~t~~~-~~~~~~-~~~g~v~~--d~~~~---V~~~~ek~~~~~~~---------~~-- 164 (458)
T PRK14354 104 PLITAE-TLKNLIDFHEEHKAAATILT-AIAENP-TGYGRIIR--NENGE---VEKIVEQKDATEEE---------KQ-- 164 (458)
T ss_pred cccCHH-HHHHHHHHHHhcCCceEEEE-EEcCCC-CCceEEEE--cCCCC---EEEEEECCCCChHH---------hc--
Confidence 876642 11233444333444444332 222222 33555542 13444 12333332211110 00
Q ss_pred cCccceeeeEEeHHHHHhhhc
Q 002690 528 DFPANTNILYVDLASAELVGS 548 (892)
Q Consensus 528 ~F~aNInn~~fsL~fL~~vl~ 548 (892)
.+..|+...+|+-+.|.+.++
T Consensus 165 ~~~~~~Giy~f~~~~l~~~l~ 185 (458)
T PRK14354 165 IKEINTGTYCFDNKALFEALK 185 (458)
T ss_pred CcEEEEEEEEEEHHHHHHHHH
Confidence 133589999999887777664
No 57
>COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism]
Probab=96.33 E-value=0.0055 Score=62.97 Aligned_cols=61 Identities=20% Similarity=0.397 Sum_probs=49.2
Q ss_pred EEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHHHH
Q 002690 290 GEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSL 369 (892)
Q Consensus 290 AvVlLAGGlGTRLG~~~PKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~~~Th~~T~~f 369 (892)
..|+||||.|||||. .-|- +++| +||.+++..++.++..- + -+++-||. ++..|++|
T Consensus 2 ~~iiMAGGrGtRmg~-~EKP--lleV-----~GkpLI~~v~~al~~~~-------d-----~i~v~isp---~tp~t~~~ 58 (177)
T COG2266 2 MAIIMAGGRGTRMGR-PEKP--LLEV-----CGKPLIDRVLEALRKIV-------D-----EIIVAISP---HTPKTKEY 58 (177)
T ss_pred ceEEecCCcccccCC-CcCc--chhh-----CCccHHHHHHHHHHhhc-------C-----cEEEEeCC---CCHhHHHH
Confidence 468999999999996 4566 8887 89999998887776521 2 36888998 89999999
Q ss_pred HHHh
Q 002690 370 CERL 373 (892)
Q Consensus 370 le~n 373 (892)
+++-
T Consensus 59 ~~~~ 62 (177)
T COG2266 59 LESV 62 (177)
T ss_pred HHhc
Confidence 9983
No 58
>PLN02728 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
Probab=96.32 E-value=0.0058 Score=65.96 Aligned_cols=43 Identities=19% Similarity=0.244 Sum_probs=37.9
Q ss_pred CcEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHH
Q 002690 287 PELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAR 336 (892)
Q Consensus 287 ~kvAvVlLAGGlGTRLG~~~PKgg~~lpV~l~p~sgkTlLql~~e~I~~l 336 (892)
.+++.|+||||.|+|||...||- .+++ .|++++++.++.+...
T Consensus 23 ~~i~aIILAAG~gsRmg~~~pKq--ll~l-----~Gkpll~~tl~~~~~~ 65 (252)
T PLN02728 23 KSVSVILLAGGVGKRMGANMPKQ--YLPL-----LGQPIALYSLYTFARM 65 (252)
T ss_pred CceEEEEEcccccccCCCCCCcc--eeEE-----CCeEHHHHHHHHHHhC
Confidence 36889999999999999989999 9988 7999999988877654
No 59
>PF01128 IspD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; InterPro: IPR001228 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, a bacterial ispD protein, catalyzes the third step of the deoxyxylulose-5-phosphate pathway (DXP) of isoprenoid biosynthesis; the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate []. The isoprenoid pathway is a well known target for anti-infective drug development [, ].; GO: 0003824 catalytic activity, 0008299 isoprenoid biosynthetic process; PDB: 1VGW_F 1VGZ_A 1W77_A 2YC3_A 2YCM_A 2YC5_A 1VGU_A 3N9W_B 1I52_A 1H3M_B ....
Probab=96.32 E-value=0.0043 Score=65.90 Aligned_cols=65 Identities=18% Similarity=0.284 Sum_probs=48.5
Q ss_pred EEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHHH
Q 002690 289 LGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITS 368 (892)
Q Consensus 289 vAvVlLAGGlGTRLG~~~PKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~~~Th~~T~~ 368 (892)
+++|+||||.|+|||.+.||- .+++ .|++++++.++.+++.. ..--++|..+. +..+.+++
T Consensus 1 V~aIilAaG~G~R~g~~~pKQ--f~~l-----~Gkpvl~~tl~~f~~~~----------~i~~Ivvv~~~--~~~~~~~~ 61 (221)
T PF01128_consen 1 VAAIILAAGSGSRMGSGIPKQ--FLEL-----GGKPVLEYTLEAFLASP----------EIDEIVVVVPP--EDIDYVEE 61 (221)
T ss_dssp EEEEEEESS-STCCTSSS-GG--GSEE-----TTEEHHHHHHHHHHTTT----------TESEEEEEESG--GGHHHHHH
T ss_pred CEEEEeCCccchhcCcCCCCe--eeEE-----CCeEeHHHHHHHHhcCC----------CCCeEEEEecc--hhHHHHHH
Confidence 578999999999999999998 8888 79999999888876532 12235566666 46677777
Q ss_pred HHHH
Q 002690 369 LCER 372 (892)
Q Consensus 369 fle~ 372 (892)
++.+
T Consensus 62 ~~~~ 65 (221)
T PF01128_consen 62 LLSK 65 (221)
T ss_dssp HHHH
T ss_pred hhcC
Confidence 7776
No 60
>cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=96.23 E-value=0.012 Score=60.76 Aligned_cols=66 Identities=20% Similarity=0.338 Sum_probs=50.5
Q ss_pred EEEecCCccccCCC---CCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHH
Q 002690 291 EIYPLGGSADRLGL---VDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (892)
Q Consensus 291 vVlLAGGlGTRLG~---~~PKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~~~Th~~T~ 367 (892)
.|+||||.||||+- ..||. ++|+ .|+++++..++.+.+. | .--++|.|.. ..+.+.
T Consensus 2 aiIlaaG~g~Rl~plt~~~pK~--llpi-----~g~~li~~~l~~l~~~--------g---i~~i~iv~~~---~~~~i~ 60 (221)
T cd06422 2 AMILAAGLGTRMRPLTDTRPKP--LVPV-----AGKPLIDHALDRLAAA--------G---IRRIVVNTHH---LADQIE 60 (221)
T ss_pred EEEEcCCCCCccccccCCCCCc--eeeE-----CCEEHHHHHHHHHHHC--------C---CCEEEEEccC---CHHHHH
Confidence 47899999999975 68999 9998 6889999999888653 3 2234666665 788888
Q ss_pred HHHHHhCCCCC
Q 002690 368 SLCERLRWFGR 378 (892)
Q Consensus 368 ~fle~n~yFGl 378 (892)
+++.+ .++|+
T Consensus 61 ~~~~~-~~~~~ 70 (221)
T cd06422 61 AHLGD-SRFGL 70 (221)
T ss_pred HHHhc-ccCCc
Confidence 88886 44553
No 61
>cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=96.20 E-value=0.0064 Score=60.08 Aligned_cols=38 Identities=26% Similarity=0.397 Sum_probs=33.3
Q ss_pred EEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHH
Q 002690 289 LGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQA 335 (892)
Q Consensus 289 vAvVlLAGGlGTRLG~~~PKgg~~lpV~l~p~sgkTlLql~~e~I~~ 335 (892)
++.|+||||.|+|||- +|. ++++ .|+++++..++++..
T Consensus 1 ~~~vIlAgG~s~R~g~--~K~--l~~~-----~g~~li~~~i~~l~~ 38 (186)
T cd04182 1 IAAIILAAGRSSRMGG--NKL--LLPL-----DGKPLLRHALDAALA 38 (186)
T ss_pred CeEEEECCCCCCCCCC--Cce--eCee-----CCeeHHHHHHHHHHh
Confidence 3678999999999985 899 9888 799999999998765
No 62
>TIGR01105 galF UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit. GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose
Probab=96.18 E-value=0.011 Score=65.09 Aligned_cols=64 Identities=14% Similarity=0.343 Sum_probs=51.9
Q ss_pred cEEEEEecCCccccCC---CCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchH
Q 002690 288 ELGEIYPLGGSADRLG---LVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHE 364 (892)
Q Consensus 288 kvAvVlLAGGlGTRLG---~~~PKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~~~Th~ 364 (892)
.+-+|+||||.||||. ..-||- |+|| .||+++++.++.+... | .--++|.|+. ..+
T Consensus 3 ~mkavILAaG~GTRL~PlT~~~PKp--LvpV-----~gkPiI~~vl~~l~~~--------G---i~~ivivv~~---~~~ 61 (297)
T TIGR01105 3 NLKAVIPVAGLGMHMLPATKAIPKE--MLPI-----VDKPMIQYIVDEIVAA--------G---IKEIVLVTHA---SKN 61 (297)
T ss_pred ceEEEEECCCCCcccCcccCCCCce--eeEE-----CCEEHHHHHHHHHHHC--------C---CCEEEEEecC---ChH
Confidence 4567999999999998 477999 9999 6899999998888653 4 3357888887 777
Q ss_pred HHHHHHHH
Q 002690 365 RITSLCER 372 (892)
Q Consensus 365 ~T~~fle~ 372 (892)
...++|..
T Consensus 62 ~i~~~~~~ 69 (297)
T TIGR01105 62 AVENHFDT 69 (297)
T ss_pred HHHHHHhc
Confidence 88999864
No 63
>cd02523 PC_cytidylyltransferase Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline. This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP
Probab=96.16 E-value=0.099 Score=54.25 Aligned_cols=60 Identities=30% Similarity=0.408 Sum_probs=45.7
Q ss_pred EEecCCccccCCC---CCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHHH
Q 002690 292 IYPLGGSADRLGL---VDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITS 368 (892)
Q Consensus 292 VlLAGGlGTRLG~---~~PKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~~~Th~~T~~ 368 (892)
|+||||.||||+- ..||. ++|+ .|+++++..++.+... | .-.++|.|.. ..+...+
T Consensus 2 iIlAaG~g~Rl~~lt~~~pK~--l~~~-----~g~~li~~~l~~l~~~--------g---i~~i~vv~~~---~~~~~~~ 60 (229)
T cd02523 2 IILAAGRGSRLRPLTEDRPKC--LLEI-----NGKPLLERQIETLKEA--------G---IDDIVIVTGY---KKEQIEE 60 (229)
T ss_pred EEEeccCccccchhhCCCCce--eeeE-----CCEEHHHHHHHHHHHC--------C---CceEEEEecc---CHHHHHH
Confidence 7899999999975 46999 9998 6889999988877552 3 2246777776 5666777
Q ss_pred HHHH
Q 002690 369 LCER 372 (892)
Q Consensus 369 fle~ 372 (892)
++.+
T Consensus 61 ~~~~ 64 (229)
T cd02523 61 LLKK 64 (229)
T ss_pred HHhc
Confidence 7764
No 64
>COG0746 MobA Molybdopterin-guanine dinucleotide biosynthesis protein A [Coenzyme metabolism]
Probab=96.09 E-value=0.012 Score=61.24 Aligned_cols=100 Identities=26% Similarity=0.397 Sum_probs=67.5
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHH
Q 002690 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (892)
Q Consensus 288 kvAvVlLAGGlGTRLG~~~PKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~~~Th~~T~ 367 (892)
....|+||||+|.|| .+|. ++++ .|++++|+.++++... +. .++|.... +.+.
T Consensus 4 ~~~~vILAGG~srRm---~dK~--l~~~-----~g~~lie~v~~~L~~~-----------~~-~vvi~~~~---~~~~-- 56 (192)
T COG0746 4 PMTGVILAGGKSRRM---RDKA--LLPL-----NGRPLIEHVIDRLRPQ-----------VD-VVVISANR---NQGR-- 56 (192)
T ss_pred CceEEEecCCccccc---cccc--ccee-----CCeEHHHHHHHHhccc-----------CC-EEEEeCCC---chhh--
Confidence 567899999999999 8899 9888 7999999999888653 34 56666555 3221
Q ss_pred HHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCcccccCCCcHHHHHHHhcCchHHHHHcCceEEEEEeCCC
Q 002690 368 SLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSN 447 (892)
Q Consensus 368 ~fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dGkilL~~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~~Gikyi~V~qVDN 447 (892)
+..|| +|.+.|.. +|.|-+ .|++.-|..-+-+|++|..+|.
T Consensus 57 -----~~~~g-------------~~vv~D~~---------------~~~GPL------~Gi~~al~~~~~~~~~v~~~D~ 97 (192)
T COG0746 57 -----YAEFG-------------LPVVPDEL---------------PGFGPL------AGILAALRHFGTEWVLVLPCDM 97 (192)
T ss_pred -----hhccC-------------CceeecCC---------------CCCCCH------HHHHHHHHhCCCCeEEEEecCC
Confidence 12222 45554221 121211 2444445556689999999999
Q ss_pred CccccC
Q 002690 448 VVAATD 453 (892)
Q Consensus 448 ~La~vD 453 (892)
+....|
T Consensus 98 P~i~~~ 103 (192)
T COG0746 98 PFIPPE 103 (192)
T ss_pred CCCCHH
Confidence 999873
No 65
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=96.01 E-value=0.097 Score=61.32 Aligned_cols=195 Identities=13% Similarity=0.143 Sum_probs=101.2
Q ss_pred EEEecCCccccCC----CCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHH
Q 002690 291 EIYPLGGSADRLG----LVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERI 366 (892)
Q Consensus 291 vVlLAGGlGTRLG----~~~PKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~~~Th~~T 366 (892)
.|+||||.||||+ ...||- ++|+. .++|++|..++++..+ | . -..+|.|+. .-....
T Consensus 3 ~vILAgG~GtRl~PlS~~~~PK~--~l~l~----g~~~ll~~tl~~l~~~--------~--~-~~iviv~~~--~~~~~~ 63 (468)
T TIGR01479 3 PVILAGGSGTRLWPLSRELYPKQ--FLALV----GDLTMLQQTLKRLAGL--------P--C-SSPLVICNE--EHRFIV 63 (468)
T ss_pred EEEecCcccccCCccccCCCCCc--eeEcC----CCCcHHHHHHHHHhcC--------C--C-cCcEEecCH--HHHHHH
Confidence 5889999999998 347999 99983 4589999998887553 2 1 234477776 222344
Q ss_pred HHHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCcccccCCCcH--HHHHHHhcCchHHHHH--cCceEEEE
Q 002690 367 TSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGA--IWKLAHDKGIFKWFHD--NGRKGATV 442 (892)
Q Consensus 367 ~~fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dGkilL~~~~~i~~~P~GHGd--Iy~aL~~sGlLd~l~~--~Gikyi~V 442 (892)
.+.+++ ||++..+ +..| |. |-|-|+ .+.++ .+.+ .+=.++.|
T Consensus 64 ~~~l~~---~~~~~~~--~i~E---p~-------------------~~gTa~ai~~aa~-------~~~~~~~~~~~vlV 109 (468)
T TIGR01479 64 AEQLRE---IGKLASN--IILE---PV-------------------GRNTAPAIALAAL-------LAARRNGEDPLLLV 109 (468)
T ss_pred HHHHHH---cCCCcce--EEec---cc-------------------ccCchHHHHHHHH-------HHHHHHCCCcEEEE
Confidence 555554 3332211 2222 11 112221 11111 1212 23457899
Q ss_pred EeCCCCccccChhHHHHHHhh---hhcCCceeEEEeeecCCCCcCceEEEEeecCC--CccccceEEEEecccCccCCCC
Q 002690 443 RQVSNVVAATDLTLLALAGIG---LHHGKKLGFASCKRSSGATEGINVLIEKKNLD--GKWAYGLSCIEYTEFDKFGITR 517 (892)
Q Consensus 443 ~qVDN~La~vDP~il~flG~~---~~~~~d~~~ksvvRK~~~~EkVGvL~~~~~~d--Gk~~~~~~vVEYsEl~~~~~~~ 517 (892)
.+.|+++... ..+-.++-.+ ...+..+.+- ++...+..+-|.+......+ +. ..|..+-|=|+...+.
T Consensus 110 l~~D~~i~~~-~~f~~~l~~~~~~a~~~~lvtlg--i~p~~p~t~YGyI~~~~~~~~~~~----~~V~~f~EKP~~~~a~ 182 (468)
T TIGR01479 110 LAADHVITDE-DAFQAAVKLAMPAAAEGKLVTFG--IVPTHPETGYGYIRRGEPLAGEDV----YQVQRFVEKPDLATAQ 182 (468)
T ss_pred ecCceeecCH-HHHHHHHHHHHHHHhcCCEEEEE--ecCCCCCCCceEEEeCCccCCCCc----eEEeEEEECCChHHHH
Confidence 9999886532 1122223322 2223222222 33344556788886410001 11 1233333333321111
Q ss_pred CCCCCCCccccCccceeeeEEeHHHHHhhhcc
Q 002690 518 GPFSSNGLQADFPANTNILYVDLASAELVGSS 549 (892)
Q Consensus 518 ~~~~dg~l~S~F~aNInn~~fsL~fL~~vl~~ 549 (892)
.-..+| .|-.|...+.|+.+.+.+.+++
T Consensus 183 ~~l~~g----~~~wNsGif~~~~~~ll~~l~~ 210 (468)
T TIGR01479 183 AYLESG----DYYWNSGMFLFRASRYLAELKK 210 (468)
T ss_pred HHHhcC----CeEEEeeEEEEEHHHHHHHHHH
Confidence 111122 1445999999999999999875
No 66
>COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane]
Probab=96.01 E-value=0.017 Score=61.96 Aligned_cols=66 Identities=18% Similarity=0.302 Sum_probs=55.0
Q ss_pred EEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHHHH
Q 002690 290 GEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSL 369 (892)
Q Consensus 290 AvVlLAGGlGTRLG~~~PKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~~~Th~~T~~f 369 (892)
..|+||.|.|+|||-+.||. ++.+ .|++++..+++++... | ..-++|.|+. ...+-..+|
T Consensus 5 kavILAAG~GsRlg~~~PK~--Lvev-----~gr~ii~~~i~~L~~~--------g---i~e~vvV~~g--~~~~lve~~ 64 (239)
T COG1213 5 KAVILAAGFGSRLGPDIPKA--LVEV-----GGREIIYRTIENLAKA--------G---ITEFVVVTNG--YRADLVEEF 64 (239)
T ss_pred eEEEEecccccccCCCCCch--hhhc-----CCeEeHHHHHHHHHHc--------C---CceEEEEecc--chHHHHHHH
Confidence 46889999999999999999 9888 6999999888877553 2 4567999977 488888999
Q ss_pred HHHhCC
Q 002690 370 CERLRW 375 (892)
Q Consensus 370 le~n~y 375 (892)
+.++++
T Consensus 65 l~~~~~ 70 (239)
T COG1213 65 LKKYPF 70 (239)
T ss_pred HhcCCc
Confidence 998774
No 67
>PRK00560 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=95.96 E-value=0.0075 Score=62.16 Aligned_cols=39 Identities=26% Similarity=0.403 Sum_probs=34.4
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeccccCCCC-CcchHHHHHHHHH
Q 002690 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCG-RTLLEGLIRDLQA 335 (892)
Q Consensus 288 kvAvVlLAGGlGTRLG~~~PKgg~~lpV~l~p~sg-kTlLql~~e~I~~ 335 (892)
+++.|+||||+++||| .+|. ++++ .| +|+++..++++..
T Consensus 8 ~i~~vILAgG~s~RmG--~~K~--ll~~-----~g~~~ll~~~i~~l~~ 47 (196)
T PRK00560 8 NIPCVILAGGKSSRMG--ENKA--LLPF-----GSYSSLLEYQYTRLLK 47 (196)
T ss_pred CceEEEECCcccccCC--CCce--EEEe-----CCCCcHHHHHHHHHHH
Confidence 7889999999999998 5798 9988 67 9999999998854
No 68
>cd02513 CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety. CMP-N-acetylneuraminic acid synthetase (CMP-NeuAc synthetase) or acylneuraminate cytidylyltransferase catalyzes the transfer the CMP moiety of CTP to the anomeric hydroxyl group of NeuAc in the presence of Mg++. It is the second to last step in the sialylation of the oligosaccharide component of glycoconjugates by providing the activated sugar-nucleotide cytidine 5'-monophosphate N-acetylneuraminic acid (CMP-Neu5Ac), the substrate for sialyltransferases. Eukaryotic CMP-NeuAc synthetases are predominantly located in the nucleus. The activated CMP-Neu5Ac diffuses from the nucleus into the cytoplasm.
Probab=95.95 E-value=0.14 Score=52.56 Aligned_cols=39 Identities=18% Similarity=0.262 Sum_probs=33.5
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHH
Q 002690 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAR 336 (892)
Q Consensus 288 kvAvVlLAGGlGTRLG~~~PKgg~~lpV~l~p~sgkTlLql~~e~I~~l 336 (892)
+++.|+||||.|+||+ .|- ++++ .|++++++.++.+++.
T Consensus 1 ~~~~iIlA~G~s~R~~---~K~--l~~l-----~Gkpll~~~l~~l~~~ 39 (223)
T cd02513 1 KILAIIPARGGSKGIP---GKN--IRPL-----GGKPLIAWTIEAALES 39 (223)
T ss_pred CeEEEEecCCCCCCCC---Ccc--cchh-----CCccHHHHHHHHHHhC
Confidence 5688999999999996 487 8777 7999999999988764
No 69
>TIGR03310 matur_ygfJ molybdenum hydroxylase accessory protein, YgfJ family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes related to xanthine dehydrogenase. Comparative genomics suggests a role in the maturation of selenium-dependent molybdenum hydroxylases, although a tenuous alternative hypothesis is a role for this protein (with a requirement for SelD, the selenium donor protein in the selenocysteine and selenouridine biosynthesis pathways) metabolizing a selenium-containing substrate such as selenate.
Probab=95.65 E-value=0.017 Score=57.73 Aligned_cols=48 Identities=23% Similarity=0.354 Sum_probs=38.5
Q ss_pred EEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCC
Q 002690 291 EIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSS 358 (892)
Q Consensus 291 vVlLAGGlGTRLG~~~PKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~ 358 (892)
+|+||||.|+||| .||. ++++ .|+++++..++++++. + .-+++|.|+.
T Consensus 2 ~iIla~G~s~R~g--~~K~--ll~~-----~g~pll~~~i~~l~~~--------~---~~~iivv~~~ 49 (188)
T TIGR03310 2 AIILAAGLSSRMG--QNKL--LLPY-----KGKTILEHVVDNALRL--------F---FDEVILVLGH 49 (188)
T ss_pred eEEECCCCcccCC--CCce--eccc-----CCeeHHHHHHHHHHHc--------C---CCcEEEEeCC
Confidence 5899999999998 5898 9887 7999999999888653 1 2356777776
No 70
>PLN02917 CMP-KDO synthetase
Probab=95.65 E-value=0.21 Score=55.11 Aligned_cols=187 Identities=10% Similarity=0.088 Sum_probs=102.6
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHH
Q 002690 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (892)
Q Consensus 288 kvAvVlLAGGlGTRLG~~~PKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~~~Th~~T~ 367 (892)
++..|++|+|.++||| +|- ++++ .|++++++.++++.... .+..++... ..+.+.
T Consensus 47 ~i~aIIpA~G~SsR~~---~K~--L~~i-----~GkPLL~~vi~~a~~~~-----------~~~~VVV~~----~~e~I~ 101 (293)
T PLN02917 47 RVVGIIPARFASSRFE---GKP--LVHI-----LGKPMIQRTWERAKLAT-----------TLDHIVVAT----DDERIA 101 (293)
T ss_pred cEEEEEecCCCCCCCC---CCC--eeeE-----CCEEHHHHHHHHHHcCC-----------CCCEEEEEC----ChHHHH
Confidence 7889999999999997 588 9888 79999999999886532 122333332 346677
Q ss_pred HHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCcccccCCCcHHHHHHHhcCchHHHHHcCceEEEEEeCCC
Q 002690 368 SLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSN 447 (892)
Q Consensus 368 ~fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dGkilL~~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~~Gikyi~V~qVDN 447 (892)
++++++ |. .+..|. ...+.|-|.+..++. .+ +...+++.+.+.|.
T Consensus 102 ~~~~~~---~v-----~vi~~~--------------------~~~~~GT~~~~~a~~------~l-~~~~d~Vlil~gD~ 146 (293)
T PLN02917 102 ECCRGF---GA-----DVIMTS--------------------ESCRNGTERCNEALK------KL-EKKYDIVVNIQGDE 146 (293)
T ss_pred HHHHHc---CC-----EEEeCC--------------------cccCCchHHHHHHHH------hc-cCCCCEEEEecCCc
Confidence 777642 21 111110 012456666655442 22 23457999999999
Q ss_pred CccccChhHHHHHHhhhhcCCceeEEEe-ee-cCCCCcCceEEEEeecCCCccccceEEEEec-c-cCccCCCCCCCCCC
Q 002690 448 VVAATDLTLLALAGIGLHHGKKLGFASC-KR-SSGATEGINVLIEKKNLDGKWAYGLSCIEYT-E-FDKFGITRGPFSSN 523 (892)
Q Consensus 448 ~La~vDP~il~flG~~~~~~~d~~~ksv-vR-K~~~~EkVGvL~~~~~~dGk~~~~~~vVEYs-E-l~~~~~~~~~~~dg 523 (892)
++...+ +|-.++-... .+.++.+.+. .. +.....+-|.+...++.+|+ .+.++ . ++.+ .+... +.
T Consensus 147 PlI~~~-tI~~li~~~~-~~~~~iv~t~~~~~~~~~~~~ygrv~vv~~~~g~------alyfsr~~Ipe~--kd~~~-~~ 215 (293)
T PLN02917 147 PLIEPE-IIDGVVKALQ-AAPDAVFSTAVTSLKPEDASDPNRVKCVVDNQGY------AIYFSRGLIPYN--KSGKV-NP 215 (293)
T ss_pred CCCCHH-HHHHHHHHHH-hcCCceEEEEeeecCHHHhcCCCceEEEECCCCe------EEEeecCcCCcC--CCccc-cc
Confidence 998863 2323444332 3344444331 11 21111233444211124565 22333 2 2222 11111 11
Q ss_pred CccccCccceeeeEEeHHHHHhhhc
Q 002690 524 GLQADFPANTNILYVDLASAELVGS 548 (892)
Q Consensus 524 ~l~S~F~aNInn~~fsL~fL~~vl~ 548 (892)
.. .+-.|+..+.|+.++|. .+.
T Consensus 216 ~~--i~~~n~Giy~f~~~~L~-~l~ 237 (293)
T PLN02917 216 QF--PYLLHLGIQSYDAKFLK-IYP 237 (293)
T ss_pred cc--ceEEEEEEEEeCHHHHH-HHH
Confidence 11 23349999999999999 444
No 71
>PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B ....
Probab=95.57 E-value=0.0083 Score=58.57 Aligned_cols=48 Identities=21% Similarity=0.462 Sum_probs=39.4
Q ss_pred EEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCC
Q 002690 291 EIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSS 358 (892)
Q Consensus 291 vVlLAGGlGTRLG~~~PKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~ 358 (892)
+|+||||.|+|||- ||. ++++ .|+++++..++.+.... .=+++|.+..
T Consensus 1 ~vILa~G~s~Rmg~--~K~--l~~i-----~g~~li~~~l~~l~~~~-----------~~~Ivvv~~~ 48 (160)
T PF12804_consen 1 AVILAAGKSSRMGG--PKA--LLPI-----GGKPLIERVLEALREAG-----------VDDIVVVTGE 48 (160)
T ss_dssp EEEEESSSCGGGTS--CGG--GSEE-----TTEEHHHHHHHHHHHHT-----------ESEEEEEEST
T ss_pred CEEECCcCcccCCC--Ccc--ceeE-----CCccHHHHHHHHhhccC-----------CceEEEecCh
Confidence 57899999999995 999 9888 79999999999987752 2366777765
No 72
>TIGR02665 molyb_mobA molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial. In many molybdopterin-containing enzymes, including nitrate reductase and dimethylsulfoxide reductase, the cofactor is molybdopterin-guanine dinucleotide. The family described here contains MobA, molybdopterin-guanine dinucleotide biosynthesis protein A, from the Proteobacteria only. MobA can reconstitute molybdopterin-guanine dinucleotide biosynthesis without the product of the neighboring gene MobB. The probable MobA proteins of other lineages differ sufficiently that they are not included in scope of this family.
Probab=95.51 E-value=0.012 Score=58.99 Aligned_cols=38 Identities=24% Similarity=0.444 Sum_probs=32.8
Q ss_pred EEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHH
Q 002690 289 LGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQ 334 (892)
Q Consensus 289 vAvVlLAGGlGTRLG~~~PKgg~~lpV~l~p~sgkTlLql~~e~I~ 334 (892)
++.|+||||.|+|||- .||. ++++ .|+++++..++.+.
T Consensus 1 ~~~iILAgG~s~Rmg~-~~K~--l~~i-----~g~pll~~~l~~l~ 38 (186)
T TIGR02665 1 ISGVILAGGRARRMGG-RDKG--LVEL-----GGKPLIEHVLARLR 38 (186)
T ss_pred CeEEEEcCCccccCCC-CCCc--eeEE-----CCEEHHHHHHHHHH
Confidence 3679999999999983 3999 9888 79999999998874
No 73
>cd02503 MobA MobA catalyzes the formation of molybdopterin guanine dinucleotide. The prokaryotic enzyme molybdopterin-guanine dinucleotide biosynthesis protein A (MobA). All mononuclear molybdoenzymes bind molybdenum in complex with an organic cofactor termed molybdopterin (MPT). In many bacteria, including Escherichia coli, molybdopterin can be further modified by attachment of a GMP group to the terminal phosphate of molybdopterin to form molybdopterin guanine dinucleotide (MGD). This GMP attachment step is catalyzed by MobA, by linking a guanosine 5'-phosphate to MPT forming molybdopterin guanine dinucleotide. This reaction requires GTP, MgCl2, and the MPT form of the cofactor. It is a reaction unique to prokaryotes, and therefore may represent a potential drug target.
Probab=95.46 E-value=0.012 Score=58.79 Aligned_cols=48 Identities=25% Similarity=0.416 Sum_probs=38.6
Q ss_pred EEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCC
Q 002690 290 GEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSS 358 (892)
Q Consensus 290 AvVlLAGGlGTRLG~~~PKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~ 358 (892)
+.|+||||.|+|||. ||. ++++ .|+++++..++++... .-+++|-|+.
T Consensus 2 ~~iILAgG~s~Rmg~--~K~--ll~~-----~g~~ll~~~i~~l~~~------------~~~iivv~~~ 49 (181)
T cd02503 2 TGVILAGGKSRRMGG--DKA--LLEL-----GGKPLLEHVLERLKPL------------VDEVVISANR 49 (181)
T ss_pred cEEEECCCccccCCC--Cce--eeEE-----CCEEHHHHHHHHHHhh------------cCEEEEECCC
Confidence 568999999999996 899 9888 7899999999887643 1246677776
No 74
>TIGR00453 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase. Members of this protein family are 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, the IspD protein of the deoxyxylulose pathway of IPP biosynthesis. In about twenty percent of bacterial genomes, this protein occurs as IspDF, a bifunctional fusion protein.
Probab=95.32 E-value=0.013 Score=60.26 Aligned_cols=38 Identities=29% Similarity=0.408 Sum_probs=34.1
Q ss_pred EEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHH
Q 002690 291 EIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQA 335 (892)
Q Consensus 291 vVlLAGGlGTRLG~~~PKgg~~lpV~l~p~sgkTlLql~~e~I~~ 335 (892)
.|+||||.|+|||...||. ++++ .|+++++..++++..
T Consensus 2 aiIlAaG~s~R~~~~~~K~--l~~l-----~gkpll~~~l~~l~~ 39 (217)
T TIGR00453 2 AVIPAAGRGTRFGSGVPKQ--YLEL-----GGRPLLEHTLDAFLA 39 (217)
T ss_pred EEEEcCcccccCCCCCCcc--EeEE-----CCeEHHHHHHHHHhc
Confidence 5899999999999878999 9998 799999999988865
No 75
>cd02516 CDP-ME_synthetase CDP-ME synthetase is involved in mevalonate-independent isoprenoid production. 4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs.
Probab=95.27 E-value=0.014 Score=59.76 Aligned_cols=41 Identities=24% Similarity=0.332 Sum_probs=35.7
Q ss_pred EEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHH
Q 002690 289 LGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAR 336 (892)
Q Consensus 289 vAvVlLAGGlGTRLG~~~PKgg~~lpV~l~p~sgkTlLql~~e~I~~l 336 (892)
++.|+||||.|+|||...||- ++|+ .|+++++..++++...
T Consensus 1 ~~~vILAaG~s~R~~~~~~K~--l~~i-----~Gkpll~~~i~~l~~~ 41 (218)
T cd02516 1 VAAIILAAGSGSRMGADIPKQ--FLEL-----GGKPVLEHTLEAFLAH 41 (218)
T ss_pred CEEEEECCcccccCCCCCCcc--eeEE-----CCeEHHHHHHHHHhcC
Confidence 357899999999999878999 9998 7999999999988653
No 76
>TIGR03202 pucB xanthine dehydrogenase accessory protein pucB. In Bacillus subtilis the expression of this protein, located in an operon with the structural subunits of xanthine dehydrogenase, has been found to be essential for XDH activity. Some members of this family appear to have a distant relationship to the MobA protein involved in molybdopterin biosynthesis, although this may be coincidental.
Probab=95.19 E-value=0.017 Score=58.43 Aligned_cols=37 Identities=24% Similarity=0.343 Sum_probs=31.6
Q ss_pred EEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHH
Q 002690 290 GEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQA 335 (892)
Q Consensus 290 AvVlLAGGlGTRLG~~~PKgg~~lpV~l~p~sgkTlLql~~e~I~~ 335 (892)
+.|+||||.|+|||. +|. ++++ .|+++++..++.+++
T Consensus 2 ~~vILAgG~s~Rmg~--~K~--ll~~-----~g~~ll~~~i~~~~~ 38 (190)
T TIGR03202 2 VAIYLAAGQSRRMGE--NKL--ALPL-----GETTLGSASLKTALS 38 (190)
T ss_pred eEEEEcCCccccCCC--Cce--ecee-----CCccHHHHHHHHHHh
Confidence 468999999999995 698 8887 799999998887654
No 77
>PRK00155 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed
Probab=95.19 E-value=0.018 Score=59.97 Aligned_cols=41 Identities=27% Similarity=0.442 Sum_probs=36.8
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHH
Q 002690 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQA 335 (892)
Q Consensus 288 kvAvVlLAGGlGTRLG~~~PKgg~~lpV~l~p~sgkTlLql~~e~I~~ 335 (892)
+++.|+||||.|+|||...||- ++++ .|++++++.+++++.
T Consensus 3 ~~~~iILAaG~s~R~g~~~~K~--l~~~-----~g~pli~~~l~~l~~ 43 (227)
T PRK00155 3 MVYAIIPAAGKGSRMGADRPKQ--YLPL-----GGKPILEHTLEAFLA 43 (227)
T ss_pred ceEEEEEcCccccccCCCCCce--eeEE-----CCEEHHHHHHHHHHc
Confidence 5778999999999999888999 9998 799999999988765
No 78
>PRK02726 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=95.18 E-value=0.019 Score=59.38 Aligned_cols=39 Identities=31% Similarity=0.430 Sum_probs=34.3
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHH
Q 002690 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQA 335 (892)
Q Consensus 288 kvAvVlLAGGlGTRLG~~~PKgg~~lpV~l~p~sgkTlLql~~e~I~~ 335 (892)
+++.|+||||.|+|||. +|. ++++ .|+|+++..++.+..
T Consensus 7 ~~~~vILAgG~s~Rmg~--~K~--ll~~-----~g~~ll~~~i~~l~~ 45 (200)
T PRK02726 7 NLVALILAGGKSSRMGQ--DKA--LLPW-----QGVPLLQRVARIAAA 45 (200)
T ss_pred CceEEEEcCCCcccCCC--Cce--eeEE-----CCEeHHHHHHHHHHh
Confidence 67889999999999995 798 9988 799999999988753
No 79
>cd02507 eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity. N-terminal domain of eEIF-2B epsilon and gamma, subunits of eukaryotic translation initiators, is a subfamily of glycosyltranferase 2 and is predicted to have glycosyltranferase activity. eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=95.15 E-value=0.58 Score=48.77 Aligned_cols=63 Identities=14% Similarity=0.167 Sum_probs=47.8
Q ss_pred EEEecCCccccCC---CCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHH
Q 002690 291 EIYPLGGSADRLG---LVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (892)
Q Consensus 291 vVlLAGGlGTRLG---~~~PKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~~~Th~~T~ 367 (892)
.|+||||.|+||+ ...||. ++|+ .|++++++.++.+... | .--++|++.. ..+...
T Consensus 3 avIlagg~g~rl~plt~~~pK~--llpv-----~g~pli~~~l~~l~~~--------g---i~~i~vv~~~---~~~~~~ 61 (216)
T cd02507 3 AVVLADGFGSRFLPLTSDIPKA--LLPV-----ANVPLIDYTLEWLEKA--------G---VEEVFVVCCE---HSQAII 61 (216)
T ss_pred EEEEeCCCccccCccccCCCcc--cceE-----CCEEHHHHHHHHHHHC--------C---CCeEEEEeCC---cHHHHH
Confidence 4669999999997 378999 9998 6889999988776542 3 2247788887 566777
Q ss_pred HHHHHhC
Q 002690 368 SLCERLR 374 (892)
Q Consensus 368 ~fle~n~ 374 (892)
+++.+..
T Consensus 62 ~~~~~~~ 68 (216)
T cd02507 62 EHLLKSK 68 (216)
T ss_pred HHHHhcc
Confidence 7777644
No 80
>COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=95.14 E-value=0.48 Score=52.19 Aligned_cols=159 Identities=19% Similarity=0.165 Sum_probs=98.6
Q ss_pred EEecCCccccCC---CCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHHH
Q 002690 292 IYPLGGSADRLG---LVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITS 368 (892)
Q Consensus 292 VlLAGGlGTRLG---~~~PKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~~~Th~~T~~ 368 (892)
|+||||.||||- +..||- ++|| -+|..+++-++++... | .--++|.++. .+-...++
T Consensus 4 iILAgG~GTRL~PlT~~~~Kq--LlpV-----~~KPmi~y~l~~L~~a--------G---I~dI~II~~~--~~~~~~~~ 63 (286)
T COG1209 4 VILAGGSGTRLRPLTRVVPKQ--LLPV-----YDKPMIYYPLETLMLA--------G---IRDILIVVGP--EDKPTFKE 63 (286)
T ss_pred EEecCcCccccccccccCCcc--ccee-----cCcchhHhHHHHHHHc--------C---CceEEEEecC--Cchhhhhh
Confidence 789999999986 588998 9998 6889999999888654 4 2345666666 46666677
Q ss_pred HHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCcccccCCCcHHHHHHHhcCchHHHHHcCceEEEEEeCCCC
Q 002690 369 LCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNV 448 (892)
Q Consensus 369 fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dGkilL~~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~~Gikyi~V~qVDN~ 448 (892)
++-+-..||+ ++++-.| -.|.|=++-+. +-+++. |-+-..++--||+
T Consensus 64 llGdgs~~gv---~itY~~Q----------------------~~p~GlA~Av~------~a~~fv--~~~~f~l~LGDNi 110 (286)
T COG1209 64 LLGDGSDFGV---DITYAVQ----------------------PEPDGLAHAVL------IAEDFV--GDDDFVLYLGDNI 110 (286)
T ss_pred hhcCccccCc---ceEEEec----------------------CCCCcHHHHHH------HHHhhc--CCCceEEEecCce
Confidence 7777688887 4555444 34666555443 223332 4466788999999
Q ss_pred ccccChhHHHHHHhhhhcCCceeEEEeeecCCCCcCceEEEEeecCCCccccceEEEEecccCcc
Q 002690 449 VAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKF 513 (892)
Q Consensus 449 La~vDP~il~flG~~~~~~~d~~~ksvvRK~~~~EkVGvL~~~~~~dGk~~~~~~vVEYsEl~~~ 513 (892)
+.. |-. .++-.+...+.+-.+- .++....+.-||+-. ..||+ -+.++|=-+.|+-
T Consensus 111 ~~~-~l~--~~~~~~~~~~~ga~i~--~~~V~dP~rfGV~e~--d~~~~---v~~l~EKP~~P~S 165 (286)
T COG1209 111 FQD-GLS--ELLEHFAEEGSGATIL--LYEVDDPSRYGVVEF--DEDGK---VIGLEEKPKEPKS 165 (286)
T ss_pred ecc-ChH--HHHHHHhccCCCcEEE--EEEcCCcccceEEEE--cCCCc---EEEeEECCCCCCC
Confidence 888 332 3344444433332222 223333356677754 24566 2556665444443
No 81
>PRK00317 mobA molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed
Probab=95.11 E-value=0.02 Score=58.12 Aligned_cols=39 Identities=21% Similarity=0.353 Sum_probs=34.0
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHH
Q 002690 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQ 334 (892)
Q Consensus 288 kvAvVlLAGGlGTRLG~~~PKgg~~lpV~l~p~sgkTlLql~~e~I~ 334 (892)
++..|+||||.|+||| ..||. ++++ .|+++++..++.+.
T Consensus 3 ~~~~vILA~G~s~Rm~-~~~K~--ll~~-----~g~~ll~~~i~~l~ 41 (193)
T PRK00317 3 PITGVILAGGRSRRMG-GVDKG--LQEL-----NGKPLIQHVIERLA 41 (193)
T ss_pred CceEEEEcCCCcccCC-CCCCc--eeEE-----CCEEHHHHHHHHHh
Confidence 5788999999999996 26898 9888 79999999998875
No 82
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=95.04 E-value=0.037 Score=62.72 Aligned_cols=40 Identities=20% Similarity=0.235 Sum_probs=34.6
Q ss_pred CcEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHH
Q 002690 287 PELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQA 335 (892)
Q Consensus 287 ~kvAvVlLAGGlGTRLG~~~PKgg~~lpV~l~p~sgkTlLql~~e~I~~ 335 (892)
.+++.|+||||+|+||| .+|. ++++ .|+++++..++.+..
T Consensus 173 ~~i~~iILAGG~SsRmG--~~K~--ll~~-----~Gk~ll~~~l~~l~~ 212 (369)
T PRK14490 173 VPLSGLVLAGGRSSRMG--SDKA--LLSY-----HESNQLVHTAALLRP 212 (369)
T ss_pred CCceEEEEcCCccccCC--CCcE--EEEE-----CCccHHHHHHHHHHh
Confidence 46789999999999999 4898 9888 799999998888754
No 83
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=94.60 E-value=0.036 Score=62.80 Aligned_cols=40 Identities=18% Similarity=0.387 Sum_probs=35.2
Q ss_pred CcEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHH
Q 002690 287 PELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQ 334 (892)
Q Consensus 287 ~kvAvVlLAGGlGTRLG~~~PKgg~~lpV~l~p~sgkTlLql~~e~I~ 334 (892)
.+++.|+||||+|+||| ..||. ++++ .|+++++..++.+.
T Consensus 4 ~~i~~VILAgG~s~Rmg-g~~K~--ll~i-----~Gkpll~~~i~~l~ 43 (366)
T PRK14489 4 SQIAGVILAGGLSRRMN-GRDKA--LILL-----GGKPLIERVVDRLR 43 (366)
T ss_pred CCceEEEEcCCcccCCC-CCCCc--eeEE-----CCeeHHHHHHHHHH
Confidence 47889999999999996 37899 9998 79999999998875
No 84
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=94.49 E-value=0.1 Score=59.05 Aligned_cols=178 Identities=19% Similarity=0.164 Sum_probs=106.6
Q ss_pred EEEEecCCccccCC---CCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHH
Q 002690 290 GEIYPLGGSADRLG---LVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERI 366 (892)
Q Consensus 290 AvVlLAGGlGTRLG---~~~PKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~~~Th~~T 366 (892)
-.|+||||.||||- .+-||- |+|| -||.+++++++.+.+ +| .--++|.+.. ..+.+
T Consensus 3 kavILagG~GtRLrPlT~~~PKP--llpI-----~gkPii~~~l~~L~~--------~G---v~eivi~~~y---~~~~i 61 (358)
T COG1208 3 KAVILAGGYGTRLRPLTDDRPKP--LLPI-----AGKPLIEYVLEALAA--------AG---VEEIVLVVGY---LGEQI 61 (358)
T ss_pred eEEEEeCCccccccccccCCCcc--ccee-----CCccHHHHHHHHHHH--------CC---CcEEEEEecc---chHHH
Confidence 46789999999997 478999 9999 599999999988855 24 3345666666 78899
Q ss_pred HHHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCcccccCCCcH-HHHHHHhcCchHHHHHcCceEEEEEeC
Q 002690 367 TSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGA-IWKLAHDKGIFKWFHDNGRKGATVRQV 445 (892)
Q Consensus 367 ~~fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dGkilL~~~~~i~~~P~GHGd-Iy~aL~~sGlLd~l~~~Gikyi~V~qV 445 (892)
+++|.+...+|+ +|.+..|.. |-|-|+ +..++.. -+.+-.++.+-
T Consensus 62 ~~~~~d~~~~~~---~I~y~~e~~----------------------~lGTag~l~~a~~~---------l~~~~f~v~~G 107 (358)
T COG1208 62 EEYFGDGEGLGV---RITYVVEKE----------------------PLGTAGALKNALDL---------LGGDDFLVLNG 107 (358)
T ss_pred HHHHhcccccCC---ceEEEecCC----------------------cCccHHHHHHHHHh---------cCCCcEEEEEC
Confidence 999999766664 444433333 344333 3333321 11266778888
Q ss_pred CCCccccChhHHHHHHhhhhcCCceeEEEeeecCCCCcCceEEEEeecCCCccccceEEEEecccCccCCCCCCCCCCCc
Q 002690 446 SNVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGL 525 (892)
Q Consensus 446 DN~La~vDP~il~flG~~~~~~~d~~~ksvvRK~~~~EkVGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~~~~dg~l 525 (892)
|++--. | +-.++.++..+++...+. .++...+ ..-|++.. .++. -.++++.|-|... ....
T Consensus 108 Dv~~~~-d--l~~l~~~~~~~~~~~~~~-~~~~~~~-~~~Gvv~~---~~~~----~~v~~f~ekp~~~-----~~~~-- 168 (358)
T COG1208 108 DVLTDL-D--LSELLEFHKKKGALATIA-LTRVLDP-SEFGVVET---DDGD----GRVVEFREKPGPE-----EPPS-- 168 (358)
T ss_pred Ceeecc-C--HHHHHHHHHhccCccEEE-EEecCCC-CcCceEEe---cCCC----ceEEEEEecCCCC-----CCCC--
Confidence 876543 2 224567766664444443 3555544 34455543 2121 2466666655321 0000
Q ss_pred cccCccceeeeEEeHHHHH
Q 002690 526 QADFPANTNILYVDLASAE 544 (892)
Q Consensus 526 ~S~F~aNInn~~fsL~fL~ 544 (892)
.-.|+..++|+-+.++
T Consensus 169 ---~~in~Giyi~~~~v~~ 184 (358)
T COG1208 169 ---NLINAGIYIFDPEVFD 184 (358)
T ss_pred ---ceEEeEEEEECHHHhh
Confidence 1237888888776665
No 85
>TIGR00466 kdsB 3-deoxy-D-manno-octulosonate cytidylyltransferase.
Probab=94.40 E-value=2 Score=45.77 Aligned_cols=187 Identities=10% Similarity=0.059 Sum_probs=96.7
Q ss_pred EEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHHHHH
Q 002690 291 EIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLC 370 (892)
Q Consensus 291 vVlLAGGlGTRLG~~~PKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~~~Th~~T~~fl 370 (892)
+|++|+|.||||+ +|- ++++ .|+++++..++++++. + .-.++|-|.+ +.+.+.+
T Consensus 2 ~iIpA~g~s~R~~---~K~--L~~l-----~GkPli~~~le~~~~~--------~---~d~VvVvt~~-----~~i~~~~ 55 (238)
T TIGR00466 2 VIIPARLASSRLP---GKP--LEDI-----FGKPMIVHVAENANES--------G---ADRCIVATDD-----ESVAQTC 55 (238)
T ss_pred EEEecCCCCCCCC---CCe--eccc-----CCcCHHHHHHHHHHhC--------C---CCeEEEEeCH-----HHHHHHH
Confidence 5889999999995 798 8887 7999999999886532 1 1133454433 4456666
Q ss_pred HHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCcccccCCCcHHHHHHHhcCchHHHHHcCceEEEEEeCCCCcc
Q 002690 371 ERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNVVA 450 (892)
Q Consensus 371 e~n~yFGl~~~qV~~F~Q~~vP~l~~~dGkilL~~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~~Gikyi~V~qVDN~La 450 (892)
++ ||. ++ + +.. ...+.|-..+..++..-.+ ..-+++.+.+.|.+++
T Consensus 56 ~~---~g~---~~----------v--------~~~----~~~~~Gt~r~~~~~~~l~~------~~~d~Vli~~gD~Pli 101 (238)
T TIGR00466 56 QK---FGI---EV----------C--------MTS----KHHNSGTERLAEVVEKLAL------KDDERIVNLQGDEPFI 101 (238)
T ss_pred HH---cCC---EE----------E--------EeC----CCCCChhHHHHHHHHHhCC------CCCCEEEEEcCCcCcC
Confidence 54 332 11 1 100 0124555555555432111 2357899999999998
Q ss_pred ccChhHHHHHHhhhhcCCceeEEEeeecCCCCc----CceEEEEeecCCCccccceEEEEecccCccCCCCCC--CCCCC
Q 002690 451 ATDLTLLALAGIGLHHGKKLGFASCKRSSGATE----GINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGP--FSSNG 524 (892)
Q Consensus 451 ~vDP~il~flG~~~~~~~d~~~ksvvRK~~~~E----kVGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~~--~~dg~ 524 (892)
..+ .|-.++-.+...+.++...+ .+...+.+ ....++. ..+|+ ..-.--+-+|.. .+.- ....+
T Consensus 102 ~~~-~I~~li~~~~~~~~~~a~~~-~~~~d~~~~~~p~~vk~v~--~~~g~----alyfsr~~ip~~--R~~~~~~~tpq 171 (238)
T TIGR00466 102 PKE-IIRQVADNLATKNVPMAALA-VKIHDAEEAFNPNAVKVVL--DSQGY----ALYFSRSLIPFD--RDFFAKRQTPV 171 (238)
T ss_pred CHH-HHHHHHHHHhcCCCCEEEEe-eecCCHHHccCCCceEEEe--CCCCe----EEEecCCCCCCC--CCccccccccc
Confidence 863 22233444333334444443 33332222 1222221 14555 111101111111 0000 01111
Q ss_pred ccccCccceeeeEEeHHHHHhhhc
Q 002690 525 LQADFPANTNILYVDLASAELVGS 548 (892)
Q Consensus 525 l~S~F~aNInn~~fsL~fL~~vl~ 548 (892)
. ..|..|+..+-|+.++|++...
T Consensus 172 ~-~~~~~h~Giy~~~~~~L~~~~~ 194 (238)
T TIGR00466 172 G-DNLLRHIGIYGYRAGFIEEYVA 194 (238)
T ss_pred c-cceeEEEEEEeCCHHHHHHHHh
Confidence 1 1244499999999999999775
No 86
>cd02541 UGPase_prokaryotic Prokaryotic UGPase catalyses the synthesis of UDP-glucose. Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity.
Probab=94.26 E-value=0.068 Score=56.95 Aligned_cols=61 Identities=20% Similarity=0.352 Sum_probs=48.0
Q ss_pred EEEecCCccccCCC---CCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHH
Q 002690 291 EIYPLGGSADRLGL---VDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (892)
Q Consensus 291 vVlLAGGlGTRLG~---~~PKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~~~Th~~T~ 367 (892)
+|+||||.||||+- ..||. ++|+ .|++++++.++.+.+. | .-.++|.|.. ..+.+.
T Consensus 3 aiIlAaG~gtRl~plt~~~pK~--llpv-----~gkpli~~~l~~l~~~--------g---i~~i~iv~~~---~~~~i~ 61 (267)
T cd02541 3 AVIPAAGLGTRFLPATKAIPKE--MLPI-----VDKPVIQYIVEEAVAA--------G---IEDIIIVTGR---GKRAIE 61 (267)
T ss_pred EEEEcCCCCccCCCcccCCCce--eeEE-----CCEEHHHHHHHHHHHC--------C---CCEEEEEeCC---chHHHH
Confidence 58899999999973 68999 9998 6889999999887652 3 2256788887 667788
Q ss_pred HHHHH
Q 002690 368 SLCER 372 (892)
Q Consensus 368 ~fle~ 372 (892)
++|..
T Consensus 62 ~~~~~ 66 (267)
T cd02541 62 DHFDR 66 (267)
T ss_pred HHhCC
Confidence 88854
No 87
>COG1211 IspD 4-diphosphocytidyl-2-methyl-D-erithritol synthase [Lipid metabolism]
Probab=94.14 E-value=0.13 Score=55.38 Aligned_cols=65 Identities=18% Similarity=0.270 Sum_probs=49.8
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHH
Q 002690 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (892)
Q Consensus 288 kvAvVlLAGGlGTRLG~~~PKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~~~Th~~T~ 367 (892)
++..|+||+|.|||||.+.||- -+++ .|+++|+.-++..+... ..=.++|.++. +-+....
T Consensus 4 ~~~~vilAaG~G~R~~~~~pKq--~l~l-----~g~pll~~tl~~f~~~~----------~i~~Ivvv~~~--~~~~~~~ 64 (230)
T COG1211 4 MVSAVILAAGFGSRMGNPVPKQ--YLEL-----GGRPLLEHTLEAFLESP----------AIDEIVVVVSP--EDDPYFE 64 (230)
T ss_pred eEEEEEEcCccccccCCCCCce--EEEE-----CCEEehHHHHHHHHhCc----------CCCeEEEEECh--hhhHHHH
Confidence 5788999999999999999998 8887 79999998888776653 12256677776 4555555
Q ss_pred HHHH
Q 002690 368 SLCE 371 (892)
Q Consensus 368 ~fle 371 (892)
++.+
T Consensus 65 ~~~~ 68 (230)
T COG1211 65 KLPK 68 (230)
T ss_pred Hhhh
Confidence 5554
No 88
>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=94.00 E-value=0.57 Score=53.91 Aligned_cols=201 Identities=15% Similarity=0.180 Sum_probs=119.5
Q ss_pred CcEEEEEecCCccccCCC---CCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCch
Q 002690 287 PELGEIYPLGGSADRLGL---VDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNH 363 (892)
Q Consensus 287 ~kvAvVlLAGGlGTRLG~---~~PKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~~~Th 363 (892)
+++-.++||||+|+||+- .-+|- .+|.+ ...-+.|+-+-... ..| .--+.+.|=. ..|
T Consensus 4 ~~~laiILaGg~G~rL~~LT~~Rakp--AVpFg----GkYRiIDF~LSN~v--------NSG---i~~I~VltQy--~~~ 64 (393)
T COG0448 4 KNVLAIILAGGRGSRLSPLTKDRAKP--AVPFG----GKYRIIDFALSNCV--------NSG---IRRIGVLTQY--KSH 64 (393)
T ss_pred cceEEEEEcCCCCCccchhhhCcccc--ccccC----ceeEEEeEEccccc--------ccC---CCeEEEEecc--chh
Confidence 467788999999999983 45555 55553 22233333222221 123 3356777777 566
Q ss_pred HHHHHHHHHhCCCCCCC--CceEEEecCCeeeEecCCCcccccCCCCcccccCCCcHHHHHHHhcCchHHHHHcCceEEE
Q 002690 364 ERITSLCERLRWFGRGQ--SSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGAT 441 (892)
Q Consensus 364 ~~T~~fle~n~yFGl~~--~qV~~F~Q~~vP~l~~~dGkilL~~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~~Gikyi~ 441 (892)
.-.+++..-..|++++ +.|+++.+.+- .++ -.|.-.+-=.+|.- +..+.+-+.+|+.
T Consensus 65 -SL~~Hi~~G~~w~l~~~~~~v~ilp~~~~-----~~~---------~~wy~Gtadai~Qn------l~~i~~~~~eyvl 123 (393)
T COG0448 65 -SLNDHIGRGWPWDLDRKNGGVFILPAQQR-----EGG---------ERWYEGTADAIYQN------LLIIRRSDPEYVL 123 (393)
T ss_pred -HHHHHhhCCCccccccccCcEEEeCchhc-----cCC---------CcceeccHHHHHHh------HHHHHhcCCCEEE
Confidence 5566666666665554 34444332111 011 11222222223332 3455688999999
Q ss_pred EEeCCCCccccChhHHHHHHhhhhcCCceeEEEeeecCC-CCcCceEEEEeecCCCccccceEEEEecccCccCCCCCCC
Q 002690 442 VRQVSNVVAATDLTLLALAGIGLHHGKKLGFASCKRSSG-ATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPF 520 (892)
Q Consensus 442 V~qVDN~La~vDP~il~flG~~~~~~~d~~~ksvvRK~~-~~EkVGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~~~ 520 (892)
|.+-|=+ .++|.. .++-.+...++++.+.+ .+-+. .+..-|++-. ..+|+ ++|+.|=|... .
T Consensus 124 IlsgDhI-YkmDy~--~ml~~H~~~gadiTv~~-~~Vp~~eas~fGim~~--D~~~~------i~~F~eKp~~~-----~ 186 (393)
T COG0448 124 ILSGDHI-YKMDYS--DMLDFHIESGADVTVAV-KEVPREEASRFGVMNV--DENGR------IIEFVEKPADG-----P 186 (393)
T ss_pred EecCCEE-EecCHH--HHHHHHHHcCCCEEEEE-EECChHhhhhcCceEE--CCCCC------EEeeeeccCcC-----C
Confidence 9999854 566776 56899999999999886 32222 2224676643 35666 77777666652 0
Q ss_pred CCCCccccCccceeeeEEeHHHHHhhhcc
Q 002690 521 SSNGLQADFPANTNILYVDLASAELVGSS 549 (892)
Q Consensus 521 ~dg~l~S~F~aNInn~~fsL~fL~~vl~~ 549 (892)
.+.++ +...+.+|+-+.|.+.|++
T Consensus 187 ~~~~l-----aSMgiYIf~~~~L~~~L~~ 210 (393)
T COG0448 187 PSNSL-----ASMGIYIFNTDLLKELLEE 210 (393)
T ss_pred cccce-----eeeeeEEEcHHHHHHHHHH
Confidence 11111 4689999999999999974
No 89
>PRK14500 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MoaC/MobA; Provisional
Probab=93.98 E-value=0.048 Score=61.71 Aligned_cols=39 Identities=23% Similarity=0.257 Sum_probs=33.6
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHH
Q 002690 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQA 335 (892)
Q Consensus 288 kvAvVlLAGGlGTRLG~~~PKgg~~lpV~l~p~sgkTlLql~~e~I~~ 335 (892)
.+..|+||||+|+||| .+|. ++++ .|++|++..++.+..
T Consensus 160 ~i~~IILAGGkSsRMG--~dKa--LL~~-----~GkpLl~~~ie~l~~ 198 (346)
T PRK14500 160 PLYGLVLTGGKSRRMG--KDKA--LLNY-----QGQPHAQYLYDLLAK 198 (346)
T ss_pred CceEEEEeccccccCC--CCcc--ccee-----CCccHHHHHHHHHHh
Confidence 5678999999999999 5898 8887 799999998877654
No 90
>PRK09382 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional
Probab=93.75 E-value=0.057 Score=61.79 Aligned_cols=43 Identities=14% Similarity=0.261 Sum_probs=37.5
Q ss_pred CcEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHH
Q 002690 287 PELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAR 336 (892)
Q Consensus 287 ~kvAvVlLAGGlGTRLG~~~PKgg~~lpV~l~p~sgkTlLql~~e~I~~l 336 (892)
.+++.|+||||.|+|||...||- .+++ .|+++++..++.+.+.
T Consensus 4 m~v~aIILAAG~GsRmg~~~pKq--ll~l-----~GkPll~~tl~~l~~~ 46 (378)
T PRK09382 4 SDISLVIVAAGRSTRFSAEVKKQ--WLRI-----GGKPLWLHVLENLSSA 46 (378)
T ss_pred CcceEEEECCCCCccCCCCCCee--EEEE-----CCeeHHHHHHHHHhcC
Confidence 36788999999999999889999 9998 7999999988877653
No 91
>cd04183 GT2_BcE_like GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule. GT2_BcbE_like: The bcbE gene is one of the genes in the capsule biosynthetic locus of Pasteurella multocida. Its deducted product is likely involved in the biosynthesis of the polysaccharide capsule, which is found on surface of a wide range of bacteria. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=93.36 E-value=0.054 Score=56.15 Aligned_cols=38 Identities=21% Similarity=0.373 Sum_probs=32.1
Q ss_pred EEEecCCccccCC---CCCCCCCceeeccccCCCCCcchHHHHHHHHH
Q 002690 291 EIYPLGGSADRLG---LVDHETGECLPAAMLPYCGRTLLEGLIRDLQA 335 (892)
Q Consensus 291 vVlLAGGlGTRLG---~~~PKgg~~lpV~l~p~sgkTlLql~~e~I~~ 335 (892)
+|+||||.||||+ ...||. ++|+ .|+++++..++.+..
T Consensus 1 ~iIlAaG~g~Rl~plt~~~pK~--ll~i-----~g~pli~~~l~~l~~ 41 (231)
T cd04183 1 IIIPMAGLGSRFKKAGYTYPKP--LIEV-----DGKPMIEWVIESLAK 41 (231)
T ss_pred CEEECCcCCccccccCCCCCce--eeEE-----CCEEHHHHHHHhhhc
Confidence 4899999999995 378999 9998 689999998887754
No 92
>PRK13389 UTP--glucose-1-phosphate uridylyltransferase subunit GalU; Provisional
Probab=91.78 E-value=0.23 Score=54.97 Aligned_cols=62 Identities=21% Similarity=0.367 Sum_probs=48.9
Q ss_pred EEEEecCCccccCCC---CCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHH
Q 002690 290 GEIYPLGGSADRLGL---VDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERI 366 (892)
Q Consensus 290 AvVlLAGGlGTRLG~---~~PKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~~~Th~~T 366 (892)
-.|++|||.||||+- ..||- ++|+ .|+++++..++.+... | .--++|.+.. ..+..
T Consensus 10 ~aiIlaaG~g~Rl~~~t~~~pK~--l~pv-----~g~pii~~~l~~l~~~--------g---i~~i~vv~~~---~~~~i 68 (302)
T PRK13389 10 KAVIPVAGLGTRMLPATKAIPKE--MLPL-----VDKPLIQYVVNECIAA--------G---ITEIVLVTHS---SKNSI 68 (302)
T ss_pred EEEEECCcCCccCCCccCCCCce--eeEE-----CCEEHHHHHHHHHHHC--------C---CCEEEEEeCC---CHHHH
Confidence 367889999999964 68999 9998 6889999998887653 3 2346777777 67888
Q ss_pred HHHHHH
Q 002690 367 TSLCER 372 (892)
Q Consensus 367 ~~fle~ 372 (892)
.++|..
T Consensus 69 ~~~~~~ 74 (302)
T PRK13389 69 ENHFDT 74 (302)
T ss_pred HHHHcc
Confidence 999864
No 93
>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=90.64 E-value=6.5 Score=44.72 Aligned_cols=187 Identities=19% Similarity=0.219 Sum_probs=117.0
Q ss_pred CcEEEEEecCCccccCC---CCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCch
Q 002690 287 PELGEIYPLGGSADRLG---LVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNH 363 (892)
Q Consensus 287 ~kvAvVlLAGGlGTRLG---~~~PKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~~~Th 363 (892)
..++.|+|-||-||||= ++-||- +.|+ .++.+++++++.+.. .| .--+++.|++ +..
T Consensus 8 ~~vkaiILvGG~GTRLrPLT~t~pKP--lVpf-----gn~pmI~hqieal~n--------sG---i~~I~la~~y--~s~ 67 (371)
T KOG1322|consen 8 QSVKAIILVGGYGTRLRPLTLTRPKP--LVPF-----GNKPMILHQIEALIN--------SG---ITKIVLATQY--NSE 67 (371)
T ss_pred cceeEEEEecCCCceeeceeccCCCc--cccc-----CcchhhHHHHHHHHh--------CC---CcEEEEEEec--CcH
Confidence 46888999999999985 688888 8777 467888887776644 24 5678999999 344
Q ss_pred HHHHHHHHHhC-CCCCCCCceEEEecCCeeeEecCCCcccccCCCCcccccCCCcHHHHHHHhcCchHHHHHcCceEEEE
Q 002690 364 ERITSLCERLR-WFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATV 442 (892)
Q Consensus 364 ~~T~~fle~n~-yFGl~~~qV~~F~Q~~vP~l~~~dGkilL~~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~~Gikyi~V 442 (892)
.--+.+.+.+. .|| ..| +|.|...|.=+ .|- -.|..+ .|....++ -.+|
T Consensus 68 sl~~~~~k~y~~~lg---Vei-~~s~eteplgt--aGp-------------------l~laR~--~L~~~~~~---~ffV 117 (371)
T KOG1322|consen 68 SLNRHLSKAYGKELG---VEI-LASTETEPLGT--AGP-------------------LALARD--FLWVFEDA---PFFV 117 (371)
T ss_pred HHHHHHHHHhhhccc---eEE-EEEeccCCCcc--cch-------------------HHHHHH--HhhhcCCC---cEEE
Confidence 46677777763 455 344 55555555443 121 111111 11111111 4556
Q ss_pred EeCCCCccccChhHHHHHHhhhhcCCceeEEEeeecCCCCcCceEEEEeecC-CCccccceEEEEecccCccCCCCCCCC
Q 002690 443 RQVSNVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNL-DGKWAYGLSCIEYTEFDKFGITRGPFS 521 (892)
Q Consensus 443 ~qVDN~La~vDP~il~flG~~~~~~~d~~~ksvvRK~~~~EkVGvL~~~~~~-dGk~~~~~~vVEYsEl~~~~~~~~~~~ 521 (892)
-+.| .+++.|- ..|+.++.+++++..+.+ .. ..+.-+-|++... . .| .+..++|=|++...
T Consensus 118 LnsD-vi~~~p~--~~~vqfH~~~gae~TI~~-t~-vdepSkyGvv~~d--~~~g------rV~~F~EKPkd~vs----- 179 (371)
T KOG1322|consen 118 LNSD-VICRMPY--KEMVQFHRAHGAEITIVV-TK-VDEPSKYGVVVID--EDTG------RVIRFVEKPKDLVS----- 179 (371)
T ss_pred ecCC-eeecCCH--HHHHHHHHhcCCceEEEE-Ee-ccCccccceEEEe--cCCC------ceeEehhCchhhhh-----
Confidence 6655 4566643 378999999999988875 32 2234466777642 3 34 47777877775311
Q ss_pred CCCccccCccceeeeEEeHHHHHhhhc
Q 002690 522 SNGLQADFPANTNILYVDLASAELVGS 548 (892)
Q Consensus 522 dg~l~S~F~aNInn~~fsL~fL~~vl~ 548 (892)
-.-|....+|+-+-|.+++-
T Consensus 180 -------nkinaGiYi~~~~vL~ri~~ 199 (371)
T KOG1322|consen 180 -------NKINAGIYILNPEVLDRILL 199 (371)
T ss_pred -------ccccceEEEECHHHHhHhhh
Confidence 12277888999999888764
No 94
>cd02518 GT2_SpsF SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat. Spore coat polysaccharide biosynthesis protein F (spsF) is a glycosyltransferase implicated in the synthesis of the spore coat in a variety of bacteria challenged by stress as starvation. The spsF gene is expressed in the late stage of coat development responsible for a terminal step in coat formation that involves the glycosylation of the coat. SpsF gene mutation resulted in spores that appeared normal. But, the spores tended to aggregate and had abnormal adsorption properties, indicating a surface alteration.
Probab=89.17 E-value=0.76 Score=48.11 Aligned_cols=60 Identities=27% Similarity=0.402 Sum_probs=42.0
Q ss_pred EEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCc-hHHHHHH
Q 002690 291 EIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNN-HERITSL 369 (892)
Q Consensus 291 vVlLAGGlGTRLG~~~PKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~~~T-h~~T~~f 369 (892)
.|+||||.++||| .|. ++++ .|+++++..++.+.... ..-.++|-|+. +- ++...++
T Consensus 2 aiIlA~G~S~R~~---~K~--ll~l-----~Gkpli~~~i~~l~~~~----------~~~~ivVv~~~--~~~~~~i~~~ 59 (233)
T cd02518 2 AIIQARMGSTRLP---GKV--LKPL-----GGKPLLEHLLDRLKRSK----------LIDEIVIATST--NEEDDPLEAL 59 (233)
T ss_pred EEEeeCCCCCCCC---CCc--cccc-----CCccHHHHHHHHHHhCC----------CCCeEEEECCC--CcccHHHHHH
Confidence 4789999999996 588 8887 79999999998876532 11245666665 22 2566666
Q ss_pred HHH
Q 002690 370 CER 372 (892)
Q Consensus 370 le~ 372 (892)
+..
T Consensus 60 ~~~ 62 (233)
T cd02518 60 AKK 62 (233)
T ss_pred HHH
Confidence 653
No 95
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=89.03 E-value=0.63 Score=55.03 Aligned_cols=202 Identities=15% Similarity=0.140 Sum_probs=103.7
Q ss_pred EEEEEecCCccccCC-C---CCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchH
Q 002690 289 LGEIYPLGGSADRLG-L---VDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHE 364 (892)
Q Consensus 289 vAvVlLAGGlGTRLG-~---~~PKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~~~Th~ 364 (892)
+-.|+||||.||||= + ..||- ++|+. .++|+||..++++..+ + ..=++ |.|+. .-.+
T Consensus 6 ~~~vIlaGG~GtRlwPlS~~~~PKq--~l~l~----~~~sllq~t~~r~~~~--------~--~~~~i-ivt~~--~~~~ 66 (478)
T PRK15460 6 LYPVVMAGGSGSRLWPLSRVLYPKQ--FLCLK----GDLTMLQTTICRLNGV--------E--CESPV-VICNE--QHRF 66 (478)
T ss_pred eEEEEECCCCccccccCCCCCCCcc--eeECC----CCCCHHHHHHHHHHhC--------C--CCCcE-EEeCH--HHHH
Confidence 567899999999996 2 35999 99984 5689999999987654 2 23345 55887 3444
Q ss_pred HHHHHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCcccccCCCcHHHHHHHhcCchHHHHHc--C-ceEEE
Q 002690 365 RITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDN--G-RKGAT 441 (892)
Q Consensus 365 ~T~~fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dGkilL~~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~~--G-ikyi~ 441 (892)
.+++-|.+.+. .+ .++++| |..--++|- -.+.+++ +.++ + =.-+.
T Consensus 67 ~v~~ql~~~~~---~~------------------~~ii~E-P~~rnTApa---ialaa~~-------~~~~~~~~~~~v~ 114 (478)
T PRK15460 67 IVAEQLRQLNK---LT------------------ENIILE-PAGRNTAPA---IALAALA-------AKRHSPESDPLML 114 (478)
T ss_pred HHHHHHHhcCC---cc------------------ccEEec-CCCCChHHH---HHHHHHH-------HHHhcCCCCCeEE
Confidence 55555554221 01 123332 111122331 0122221 1122 2 24677
Q ss_pred EEeCCCCccccCh---hHHHHHHhhhh-cCCceeEEEeeecCCCCcCceEEEEeecCCCc-cccceEEEEecccCccCCC
Q 002690 442 VRQVSNVVAATDL---TLLALAGIGLH-HGKKLGFASCKRSSGATEGINVLIEKKNLDGK-WAYGLSCIEYTEFDKFGIT 516 (892)
Q Consensus 442 V~qVDN~La~vDP---~il~flG~~~~-~~~d~~~ksvvRK~~~~EkVGvL~~~~~~dGk-~~~~~~vVEYsEl~~~~~~ 516 (892)
|...|......+- +|- -+.-.. .+.=+.+- ++-+.|+.+=|-+-.-...++. ......|....|=|+...+
T Consensus 115 vlPaDH~I~d~~~F~~~i~--~A~~~A~~~~lvt~G--I~Pt~PeTgyGYI~~g~~~~~~~~~~~~~V~~F~EKPd~~tA 190 (478)
T PRK15460 115 VLAADHVIADEDAFRAAVR--NAMPYAEAGKLVTFG--IVPDLPETGYGYIRRGEVSAGEQDTVAFEVAQFVEKPNLETA 190 (478)
T ss_pred EeccccccCCHHHHHHHHH--HHHHHHhcCCEEEEe--cCCCCCCCCCCeEEeCCccccccccCceEeeEEEeCCCHHHH
Confidence 8888876554211 111 122212 23222222 3334466677777321000100 0001345555555554322
Q ss_pred CCCCCCCCccccCccceeeeEEeHHHHHhhhcc
Q 002690 517 RGPFSSNGLQADFPANTNILYVDLASAELVGSS 549 (892)
Q Consensus 517 ~~~~~dg~l~S~F~aNInn~~fsL~fL~~vl~~ 549 (892)
+.=..+| .|--|..++.|+.+.+.+.+++
T Consensus 191 ~~yl~~G----~y~WNsGiF~~~a~~~l~~~~~ 219 (478)
T PRK15460 191 QAYVASG----EYYWNSGMFLFRAGRYLEELKK 219 (478)
T ss_pred HHHHHcC----CEEEecceeheeHHHHHHHHHH
Confidence 2212233 2556999999999999998885
No 96
>TIGR03584 PseF pseudaminic acid CMP-transferase. The sequences in this family include the pfam02348 (cytidyltransferase) domain and are homologous to the NeuA protein responsible for the transfer of CMP to neuraminic acid. According to, this gene is responsible for the transfer of CMP to the structurally related sugar, pseudaminic acid which is observed as a component of sugar modifications of flagellin in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci.
Probab=83.34 E-value=41 Score=35.65 Aligned_cols=182 Identities=13% Similarity=0.160 Sum_probs=95.0
Q ss_pred EEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHHHHH
Q 002690 291 EIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLC 370 (892)
Q Consensus 291 vVlLAGGlGTRLG~~~PKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~~~Th~~T~~fl 370 (892)
.|++|.|.+.||+ .|- ..++ .|++|+++.++.+++.. ..-.+++ .++ ++++.++.
T Consensus 2 aiIpArG~Skr~~---~Kn--l~~l-----~GkpLi~~ti~~a~~s~----------~~d~IvV-std----~~~i~~~a 56 (222)
T TIGR03584 2 AIIPARGGSKRIP---RKN--IKPF-----CGKPMIAYSIEAALNSG----------LFDKVVV-STD----DEEIAEVA 56 (222)
T ss_pred EEEccCCCCCCCC---Ccc--chhc-----CCcCHHHHHHHHHHhCC----------CCCEEEE-eCC----CHHHHHHH
Confidence 4778999999996 477 6666 79999999999876632 1112334 333 35677777
Q ss_pred HHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCcccccCCCcHHHHHHHhcCchHHHHH-cCceEEEEEeCCCCc
Q 002690 371 ERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHD-NGRKGATVRQVSNVV 449 (892)
Q Consensus 371 e~n~yFGl~~~qV~~F~Q~~vP~l~~~dGkilL~~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~-~Gikyi~V~qVDN~L 449 (892)
+++ |. .| |... +..++..--|-.++.... ++.+.. ...+++.+.+.|.++
T Consensus 57 ~~~---g~---~v--------~~~r----------~~~l~~d~~~~~~si~~~-----l~~l~~~~~~d~v~~l~~tsPl 107 (222)
T TIGR03584 57 KSY---GA---SV--------PFLR----------PKELADDFTGTAPVVKHA-----IEELKLQKQYDHACCIYATAPF 107 (222)
T ss_pred HHc---CC---Ee--------EEeC----------hHHHcCCCCCchHHHHHH-----HHHHhhcCCCCEEEEecCCCCc
Confidence 753 32 11 1111 011111111222322221 233322 346889999999999
Q ss_pred cccChhHHHHHHhhhhcCCceeEEEeeecC-CCCcCceEEEEeecCCCccccceEEEEecccCccCCCCCCCCCCCcccc
Q 002690 450 AATDLTLLALAGIGLHHGKKLGFASCKRSS-GATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQAD 528 (892)
Q Consensus 450 a~vDP~il~flG~~~~~~~d~~~ksvvRK~-~~~EkVGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~~~~dg~l~S~ 528 (892)
...+ .|-.++-.....+++..+-+ ++.. ++.-. ... ..+|+ +...-...... +..| +-..
T Consensus 108 ~~~~-~I~~~i~~~~~~~~ds~~sv-~~~~~~~~~~--~~~---~~~g~----~~~~~~~~~~~------~rQd--~~~~ 168 (222)
T TIGR03584 108 LQAK-ILKEAFELLKQPNAHFVFSV-TSFAFPIQRA--FKL---KENGG----VEMFFPEHFNT------RSQD--LEEA 168 (222)
T ss_pred CCHH-HHHHHHHHHHhCCCCEEEEe-eccCCChHHh--eEE---CCCCc----EEecCCCcccC------CCCC--Cchh
Confidence 9972 12234455455557766665 4322 22111 121 14565 33322111110 1111 1112
Q ss_pred CccceeeeEEeHHHHHh
Q 002690 529 FPANTNILYVDLASAEL 545 (892)
Q Consensus 529 F~aNInn~~fsL~fL~~ 545 (892)
|.-|-+.++++.+.+.+
T Consensus 169 y~~nga~y~~~~~~~~~ 185 (222)
T TIGR03584 169 YHDAGQFYWGKSQAWLE 185 (222)
T ss_pred eeeCCeEEEEEHHHHHh
Confidence 54599999999998865
No 97
>COG0836 {ManC} Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=82.28 E-value=1.9 Score=48.72 Aligned_cols=200 Identities=13% Similarity=0.068 Sum_probs=103.8
Q ss_pred EEEEecCCccccCC----CCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHH
Q 002690 290 GEIYPLGGSADRLG----LVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHER 365 (892)
Q Consensus 290 AvVlLAGGlGTRLG----~~~PKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~~~Th~~ 365 (892)
.-|+||||.||||= -..||- -+.+. +++|+||-.++|+..+. + .-.+++.|+. +-...
T Consensus 3 ~pvIlaGG~GsRLWPLSR~~~PKQ--Fl~L~----~~~Sllq~T~~R~~~l~-------~---~~~~~vVtne--~~~f~ 64 (333)
T COG0836 3 IPVILAGGSGSRLWPLSRKDYPKQ--FLKLF----GDLSLLQQTVKRLAFLG-------D---IEEPLVVTNE--KYRFI 64 (333)
T ss_pred eeEEEeCCCccccCCcCcccCCcc--ceeeC----CCCcHHHHHHHHHhhcC-------C---ccCeEEEeCH--HHHHH
Confidence 45789999999994 257887 77763 78999999999998764 1 3355666766 23444
Q ss_pred HHHHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCcccccCCCcHHHHHHHhcCchHHHHHcCceEEEEEeC
Q 002690 366 ITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQV 445 (892)
Q Consensus 366 T~~fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dGkilL~~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~~Gikyi~V~qV 445 (892)
+++=|.+-+. ....+ ++++- -.=-++| .|.. +.+.-..+.|=--+.|.-.
T Consensus 65 v~eql~e~~~-------------------~~~~~-illEP-~gRnTAp----AIA~-----aa~~~~~~~~d~~~lVlps 114 (333)
T COG0836 65 VKEQLPEIDI-------------------ENAAG-IILEP-EGRNTAP----AIAL-----AALSATAEGGDALVLVLPS 114 (333)
T ss_pred HHHHHhhhhh-------------------ccccc-eEecc-CCCCcHH----HHHH-----HHHHHHHhCCCcEEEEecC
Confidence 4444443111 00112 33331 1111222 1111 1122233344334667777
Q ss_pred CCCccccCh---hHHHHHHhh-hhcCCceeEEEeeecCCCCcCceEEEEeecCCCccc--cceEEEEecccCccCCCCCC
Q 002690 446 SNVVAATDL---TLLALAGIG-LHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWA--YGLSCIEYTEFDKFGITRGP 519 (892)
Q Consensus 446 DN~La~vDP---~il~flG~~-~~~~~d~~~ksvvRK~~~~EkVGvL~~~~~~dGk~~--~~~~vVEYsEl~~~~~~~~~ 519 (892)
|-.....+- ++- -+.- +.++.-+.|-. +. +.|..|-|-+-. .++.. ..+.|-++-|=|+...++.-
T Consensus 115 DH~I~d~~af~~av~--~A~~~A~~g~lVTfGI-~P-t~PeTGYGYIe~----G~~~~~~~~~~V~~FvEKPd~etA~~y 186 (333)
T COG0836 115 DHVIADEEAFLNAVK--KAEKAAEEGGIVTFGI-PP-TRPETGYGYIET----GESIAENGVYKVDRFVEKPDLETAKKY 186 (333)
T ss_pred cceeccHHHHHHHHH--HHHHHHHcCCEEEEec-CC-CCCccCcceeec----CcccccCCceEeeeeeeCCCHHHHHHH
Confidence 765544211 110 1111 12233333332 22 234556666622 11100 02566667777776433333
Q ss_pred CCCCCccccCccceeeeEEeHHHHHhhhcc
Q 002690 520 FSSNGLQADFPANTNILYVDLASAELVGSS 549 (892)
Q Consensus 520 ~~dg~l~S~F~aNInn~~fsL~fL~~vl~~ 549 (892)
...|. |--|-....|+.+.+.+.+++
T Consensus 187 v~sG~----y~WNSGmF~Fra~~~l~e~~~ 212 (333)
T COG0836 187 VESGE----YLWNSGMFLFRASVFLEELKK 212 (333)
T ss_pred HHcCc----eEeeccceEEEHHHHHHHHHh
Confidence 34442 556999999999999888875
No 98
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=77.57 E-value=17 Score=43.09 Aligned_cols=106 Identities=14% Similarity=0.190 Sum_probs=69.5
Q ss_pred eceEEEeeEEEEeccCCCCceecCCCccceecccccceEEEeeeEEeeCc---eeeecCCCccccccceeeeEEEEEEec
Q 002690 747 RNVQLDGSLIIVAENVMGSTRIADNGESILQYGYRCGRCKLNNVKVLNKG---IDWDCGDNTYWKHDVQWFEALKVILHG 823 (892)
Q Consensus 747 ~~v~ldGslvI~a~~~~g~~~~~~~g~~i~~~~~~~~~~~~~~~~V~N~G---~~~~~~~~~~w~~~~~r~e~~~i~~~g 823 (892)
+||.|.|- +|++. |.... ..-..|.. ..|-+++|+|.+++|-| +..+.++...-.+.+.-...+.|++
T Consensus 115 ~nVTIsGL-tIdGs---G~dl~-~rdAgI~v--~~a~~v~Iedn~L~gsg~FGI~L~~~~~~I~~N~I~g~~~~~I~l-- 185 (455)
T TIGR03808 115 DGIGLSGL-TLDGG---GIPLP-QRRGLIHC--QGGRDVRITDCEITGSGGNGIWLETVSGDISGNTITQIAVTAIVS-- 185 (455)
T ss_pred CCeEEEee-EEEeC---CCccc-CCCCEEEE--ccCCceEEEeeEEEcCCcceEEEEcCcceEecceEeccccceEEE--
Confidence 56777776 55543 21111 11123334 77889999999999885 5555555666677777777777654
Q ss_pred CceeEeeceeEecCeEEEecCC----eeEEEeeCCCceEEEeccccc
Q 002690 824 NAEFEASDVTLQGNHVFEVPDG----HKLKITSGNSGLVVQLDPIEQ 866 (892)
Q Consensus 824 ~~ef~a~~v~~~g~~~~~vp~g----~~~~~~~~~~~~~~~~~~~~~ 866 (892)
|++.++.++||++....|+ +|+.+-++ |-.+.-.+|+.
T Consensus 186 ---w~S~g~~V~~N~I~g~RD~gi~i~r~~~~~d--g~~v~~n~i~~ 227 (455)
T TIGR03808 186 ---FDALGLIVARNTIIGANDNGIEILRSAIGDD--GTIVTDNRIED 227 (455)
T ss_pred ---eccCCCEEECCEEEccCCCCeEEEEeeecCC--cceeecccccc
Confidence 8999999999999999998 55544444 33444445544
No 99
>COG4750 LicC CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes [Cell envelope biogenesis, outer membrane]
Probab=76.95 E-value=1.8 Score=45.91 Aligned_cols=60 Identities=20% Similarity=0.253 Sum_probs=44.1
Q ss_pred EEEecCCccccCC---CCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHH
Q 002690 291 EIYPLGGSADRLG---LVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (892)
Q Consensus 291 vVlLAGGlGTRLG---~~~PKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~~~Th~~T~ 367 (892)
.|+||-|+|||+- ++-||+ ++.| .|+.+++.++++++.. | .--+.|.|.- - .+--
T Consensus 3 AIIlAAG~gsR~~plT~~tpK~--LlkV-----~g~plIErqI~~L~e~--------g---I~dI~IVvGY---l-kE~F 60 (231)
T COG4750 3 AIILAAGLGSRFVPLTQSTPKS--LLKV-----NGEPLIERQIEQLREA--------G---IDDITIVVGY---L-KEQF 60 (231)
T ss_pred eEEEecccccccccccccCChH--HHHh-----cCcccHHHHHHHHHHC--------C---CceEEEEeee---h-HHHH
Confidence 5789999999975 688999 8888 7899999888888653 2 3346677766 2 3344
Q ss_pred HHHHH
Q 002690 368 SLCER 372 (892)
Q Consensus 368 ~fle~ 372 (892)
+||++
T Consensus 61 eYLkd 65 (231)
T COG4750 61 EYLKD 65 (231)
T ss_pred HHHHH
Confidence 56665
No 100
>COG1210 GalU UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=74.57 E-value=4.3 Score=45.09 Aligned_cols=60 Identities=20% Similarity=0.342 Sum_probs=41.4
Q ss_pred EEEecCCccccCCC---CCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHH
Q 002690 291 EIYPLGGSADRLGL---VDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (892)
Q Consensus 291 vVlLAGGlGTRLG~---~~PKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~~~Th~~T~ 367 (892)
.|+.|.|+|||+=- .-||= |||| -.|...|+.++...+. | .--++|.|+. +...+.
T Consensus 7 AViPaAGlGTRfLPATKaiPKE--MLPI-----vdKP~IqYiVeEa~~a--------G---Ie~i~iVTgr---~K~~Ie 65 (291)
T COG1210 7 AVIPAAGLGTRFLPATKAIPKE--MLPI-----VDKPLIQYIVEEAVAA--------G---IEEILIVTGR---GKRAIE 65 (291)
T ss_pred EEEEccCcccccccccccCchh--hccc-----cCchhHHHHHHHHHHc--------C---CCEEEEEecC---CcchHH
Confidence 46789999999932 34555 6666 6799999999876553 4 4567888887 444554
Q ss_pred HHHH
Q 002690 368 SLCE 371 (892)
Q Consensus 368 ~fle 371 (892)
++|.
T Consensus 66 DhFD 69 (291)
T COG1210 66 DHFD 69 (291)
T ss_pred HhCc
Confidence 4443
No 101
>COG2068 Uncharacterized MobA-related protein [General function prediction only]
Probab=73.41 E-value=4 Score=43.33 Aligned_cols=39 Identities=15% Similarity=0.304 Sum_probs=34.6
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHH
Q 002690 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQA 335 (892)
Q Consensus 288 kvAvVlLAGGlGTRLG~~~PKgg~~lpV~l~p~sgkTlLql~~e~I~~ 335 (892)
+++.|+||-|.|+||| .+|- ++|+ .|+++....+++.+.
T Consensus 5 ~v~~VvLAAGrssRmG--~~Kl--Lap~-----~g~plv~~~~~~a~~ 43 (199)
T COG2068 5 TVAAVVLAAGRSSRMG--QPKL--LAPL-----DGKPLVRASAETALS 43 (199)
T ss_pred ceEEEEEcccccccCC--Ccce--eccc-----CCCcHHHHHHHHHHh
Confidence 7899999999999999 7898 8877 899999998887764
No 102
>PF14134 DUF4301: Domain of unknown function (DUF4301)
Probab=42.05 E-value=25 Score=42.12 Aligned_cols=60 Identities=27% Similarity=0.328 Sum_probs=46.7
Q ss_pred ceEEEecCC---eeeEecCCCcccccCCCCcccccCCCcHHHHHHHhcCchHHHHHcCceEEEEEeCCCCccc
Q 002690 382 SFQLFEQPL---VPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNVVAA 451 (892)
Q Consensus 382 qV~~F~Q~~---vP~l~~~dGkilL~~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~~Gikyi~V~qVDN~La~ 451 (892)
+|.|=.|.. --+++ .|+.+.-++.+++..-|.|||.+. +-|-+..-.-|||=||||+...
T Consensus 235 ~IsfS~Qk~sTDTIAv~-~dN~pFR~~dG~LlFRPgGHGALi---------eNLN~ldaDiIFIKNIDNVvpd 297 (513)
T PF14134_consen 235 EISFSEQKPSTDTIAVD-PDNTPFRNEDGSLLFRPGGHGALI---------ENLNDLDADIIFIKNIDNVVPD 297 (513)
T ss_pred EEEecccCCCCCeeEEC-CCCCccCCCCCCEEeCCCcchHHH---------hhhccccCCEEEEeCccccCCc
Confidence 465666653 45676 678888899999999999999865 4455567788999999999864
No 103
>PF05726 Pirin_C: Pirin C-terminal cupin domain; InterPro: IPR008778 This entry represents C-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 1J1L_A 3ACL_A 2P17_A.
Probab=41.39 E-value=72 Score=29.94 Aligned_cols=67 Identities=18% Similarity=0.346 Sum_probs=47.2
Q ss_pred eeeeEEEEEEecCceeEeeceeEecCeEEEecCCeeEEEeeCCCce---EEEeccccccccCCCcceEEEEEeC
Q 002690 812 QWFEALKVILHGNAEFEASDVTLQGNHVFEVPDGHKLKITSGNSGL---VVQLDPIEQNMMDTGSWHWNYKING 882 (892)
Q Consensus 812 ~r~e~~~i~~~g~~ef~a~~v~~~g~~~~~vp~g~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~w~y~~~~ 882 (892)
.-+|++-.+++|.+++......+.-.++....+|-.+.++.++.+. .+.=.||.+ .--|+|.|-|+.
T Consensus 18 ~~~~~~iyv~~G~~~v~~~~~~~~~~~~~~l~~g~~i~~~a~~~~a~~lll~GePl~E----pi~~~GpFVmnt 87 (104)
T PF05726_consen 18 PGHNAFIYVLEGSVEVGGEEDPLEAGQLVVLEDGDEIELTAGEEGARFLLLGGEPLNE----PIVQYGPFVMNT 87 (104)
T ss_dssp TT-EEEEEEEESEEEETTTTEEEETTEEEEE-SECEEEEEESSSSEEEEEEEE----S------EEETTEEESS
T ss_pred CCCEEEEEEEECcEEECCCcceECCCcEEEECCCceEEEEECCCCcEEEEEEccCCCC----CEEEECCcccCC
Confidence 4568899999999988777777888888888899999999775544 444578887 467899999864
No 104
>COG5608 LEA14-like dessication related protein [Defense mechanisms]
Probab=34.70 E-value=1.8e+02 Score=30.26 Aligned_cols=71 Identities=17% Similarity=0.241 Sum_probs=46.7
Q ss_pred EEEeeEEEEeccCCCCceecCCCccceecccccceEEEeeeEE----eeCceeeecCCC---------------cccccc
Q 002690 750 QLDGSLIIVAENVMGSTRIADNGESILQYGYRCGRCKLNNVKV----LNKGIDWDCGDN---------------TYWKHD 810 (892)
Q Consensus 750 ~ldGslvI~a~~~~g~~~~~~~g~~i~~~~~~~~~~~~~~~~V----~N~G~~~~~~~~---------------~~w~~~ 810 (892)
++-|.+.|.+.|. -||-+-|-.. .+-++++++ .++|....+.+. .||+-.
T Consensus 51 EiV~t~KiyNPN~----------fPipVtgl~y-~vymN~Iki~eG~~~k~~~v~p~S~~tvdv~l~~d~~~~ke~w~~h 119 (161)
T COG5608 51 EIVGTLKIYNPNP----------FPIPVTGLQY-AVYMNDIKIGEGEILKGTTVPPNSRETVDVPLRLDNSKIKEWWVTH 119 (161)
T ss_pred EEEEEEEecCCCC----------cceeeeceEE-EEEEcceEeeccccccceEECCCCeEEEEEEEEEehHHHHHHHHHH
Confidence 5567777775544 4442111111 455566655 577777777665 389989
Q ss_pred ceeeeEEEEEEecCceeEeec
Q 002690 811 VQWFEALKVILHGNAEFEASD 831 (892)
Q Consensus 811 ~~r~e~~~i~~~g~~ef~a~~ 831 (892)
+++.|--+|...+++++++.-
T Consensus 120 i~ngErs~Ir~~i~~~v~vg~ 140 (161)
T COG5608 120 IENGERSTIRVRIKGVVKVGG 140 (161)
T ss_pred hhccCcccEEEEEEEEEEEcc
Confidence 999999888888888887643
No 105
>PF10162 G8: G8 domain; InterPro: IPR019316 This entry represents a domain found in disease proteins PKHD1 and KIAA1199 and is named G8 after its 8 conserved glycines. It is predicted to contain 10 beta strands and an alpha helix [].
Probab=34.52 E-value=1.8e+02 Score=28.38 Aligned_cols=68 Identities=15% Similarity=0.243 Sum_probs=49.9
Q ss_pred CCCCcEEEEEeceEEeeceEEEeeEEEEeccCCCCceecCCCccceecccccceEEEeeeEEeeCceeeecCCC--cccc
Q 002690 731 VSKGSELQIEVAEFLWRNVQLDGSLIIVAENVMGSTRIADNGESILQYGYRCGRCKLNNVKVLNKGIDWDCGDN--TYWK 808 (892)
Q Consensus 731 is~~S~L~veG~~~~~~~v~ldGslvI~a~~~~g~~~~~~~g~~i~~~~~~~~~~~~~~~~V~N~G~~~~~~~~--~~w~ 808 (892)
|.++.++.++.+...++.+.+.|.|++.-+ ... .+..+.+.|.+.| .+...++ -|
T Consensus 17 I~~g~~v~lD~~~~~l~~l~I~G~L~f~~~--~~~------------------~L~a~~I~V~~Gg-~l~iGs~~~P~-- 73 (125)
T PF10162_consen 17 IPAGQTVLLDVSTPKLGSLIIGGTLIFDDD--RDI------------------TLRAEYILVEGGG-RLIIGSEDCPF-- 73 (125)
T ss_pred ECCCCEEEEcCCChheeEEEEEEEEEEccC--CCC------------------EEEEEEEEECCCC-eEEecCCCCCc--
Confidence 889999999999889999999999999743 111 5677777888876 5554443 34
Q ss_pred ccceeeeEEEEEEecCce
Q 002690 809 HDVQWFEALKVILHGNAE 826 (892)
Q Consensus 809 ~~~~r~e~~~i~~~g~~e 826 (892)
.-..+|.|+|+..
T Consensus 74 -----~~~~~I~L~G~~~ 86 (125)
T PF10162_consen 74 -----QGKATITLYGRRS 86 (125)
T ss_pred -----CceEEEEEEcCCC
Confidence 3356788998644
No 106
>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=34.12 E-value=3.2e+02 Score=31.45 Aligned_cols=184 Identities=13% Similarity=0.080 Sum_probs=104.8
Q ss_pred EEEEEecCC-cccc---CCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchH
Q 002690 289 LGEIYPLGG-SADR---LGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHE 364 (892)
Q Consensus 289 vAvVlLAGG-lGTR---LG~~~PKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~~~Th~ 364 (892)
.|||++.|= -||| |-++-||- ++|+ -|....+..+....++..|+ . +++.-+ .-.+
T Consensus 4 ~AVIlVGGP~kGTRFRPLSf~vPKP--Lfpi-----aG~pmI~Hhi~ac~qi~~l~--------e---I~LvGF--y~e~ 63 (407)
T KOG1460|consen 4 KAVILVGGPQKGTRFRPLSFNVPKP--LFPI-----AGVPMIHHHISACKQISGLA--------E---ILLVGF--YEER 63 (407)
T ss_pred EEEEEecCCCCCccccccccCCCCC--cccc-----CCcchhhhhHHHHhcccchh--------h---eeEEec--ccch
Confidence 456665443 3999 46899999 9999 57778888877776665332 1 233344 2455
Q ss_pred HHHHHHHHhC-CCCCCCCceEEEecCCeeeEecCCCcccccCCCCcccccCCCcHHHHHHHhcCchHHHHHcCceEEEEE
Q 002690 365 RITSLCERLR-WFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVR 443 (892)
Q Consensus 365 ~T~~fle~n~-yFGl~~~qV~~F~Q~~vP~l~~~dGkilL~~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~~Gikyi~V~ 443 (892)
.-..|+.+-. .|- +|. ++--+.+|.|-||-...+. |...+---..+|+.
T Consensus 64 ~f~~fis~~~~e~~-------------~pv------------rYL~E~~plGtaGgLyhFr-----dqIl~g~ps~vFvl 113 (407)
T KOG1460|consen 64 VFTDFISAIQQEFK-------------VPV------------RYLREDNPLGTAGGLYHFR-----DQILAGSPSAVFVL 113 (407)
T ss_pred HHHHHHHHHHhhcc-------------cch------------hhhccCCCCCcccceeehh-----hHHhcCCCceEEEE
Confidence 5566666532 221 121 2333568888766443333 44556667889999
Q ss_pred eCCCCccccChhHHHHHHhhhhcCCceeEEEeeecCC-CCcCceEEEEeecCCCccccceEEEEecccCccCCCCCCCCC
Q 002690 444 QVSNVVAATDLTLLALAGIGLHHGKKLGFASCKRSSG-ATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSS 522 (892)
Q Consensus 444 qVDN~La~vDP~il~flG~~~~~~~d~~~ksvvRK~~-~~EkVGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~~~~d 522 (892)
|.|=+..+.=+ .++-.+...+.-+.+.+ ..-.. .+..-|.|++. -..| .++-|.|=|.--. +|
T Consensus 114 naDVCcsfPl~---~ml~ahr~~g~~~tll~-tkvs~e~asnfG~lV~d-P~t~------evlHYveKPsTfv-----Sd 177 (407)
T KOG1460|consen 114 NADVCCSFPLQ---DMLEAHRRYGGIGTLLV-TKVSREQASNFGCLVED-PSTG------EVLHYVEKPSTFV-----SD 177 (407)
T ss_pred ecceecCCcHH---HHHHHHhhcCCceEEEE-EEecHhHhhccCeeeec-CCcC------ceEEeecCcchhh-----hc
Confidence 99987777522 34566666666666664 22111 23346677651 1233 3677877655421 10
Q ss_pred CCccccCccceeeeEEeHHHHHh
Q 002690 523 NGLQADFPANTNILYVDLASAEL 545 (892)
Q Consensus 523 g~l~S~F~aNInn~~fsL~fL~~ 545 (892)
..|.....|+-+.++.
T Consensus 178 -------~InCGvYlF~~eif~~ 193 (407)
T KOG1460|consen 178 -------IINCGVYLFTPEIFNA 193 (407)
T ss_pred -------ccceeEEEecHHHHHH
Confidence 1255567777665443
No 107
>COG1861 SpsF Spore coat polysaccharide biosynthesis protein F, CMP-KDO synthetase homolog [Cell envelope biogenesis, outer membrane]
Probab=31.69 E-value=68 Score=35.08 Aligned_cols=67 Identities=15% Similarity=0.278 Sum_probs=48.3
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHH
Q 002690 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (892)
Q Consensus 288 kvAvVlLAGGlGTRLG~~~PKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~~~Th~~T~ 367 (892)
+.++|+=| |||++.=+|--++|+ -+.++++++++++++... .=-++|-||+. .+++...
T Consensus 3 ~I~~IiQA-----RmgStRLpgKvLlpL-----~~~pmI~~~lervrks~~----------~d~ivvATS~~-~~d~~l~ 61 (241)
T COG1861 3 MILVIIQA-----RMGSTRLPGKVLLPL-----GGEPMIEYQLERVRKSKD----------LDKIVVATSDK-EEDDALE 61 (241)
T ss_pred cEEEEeee-----cccCccCCcchhhhc-----CCCchHHHHHHHHhcccc----------ccceEEEecCC-cchhHHH
Confidence 44555544 777765444227776 688899999999987642 23579999994 7888889
Q ss_pred HHHHHhCC
Q 002690 368 SLCERLRW 375 (892)
Q Consensus 368 ~fle~n~y 375 (892)
.++.++.+
T Consensus 62 ~~~~~~G~ 69 (241)
T COG1861 62 EVCRSHGF 69 (241)
T ss_pred HHHHHcCe
Confidence 99999775
No 108
>PRK00924 5-keto-4-deoxyuronate isomerase; Provisional
Probab=31.21 E-value=1.5e+02 Score=33.20 Aligned_cols=80 Identities=14% Similarity=0.149 Sum_probs=49.6
Q ss_pred eEEEeeeEEeeCceeeecCCCccccccceeeeEEEEEEecCceeEeeceeEe--cCeEEEecCCee-EEEeeCC----Cc
Q 002690 784 RCKLNNVKVLNKGIDWDCGDNTYWKHDVQWFEALKVILHGNAEFEASDVTLQ--GNHVFEVPDGHK-LKITSGN----SG 856 (892)
Q Consensus 784 ~~~~~~~~V~N~G~~~~~~~~~~w~~~~~r~e~~~i~~~g~~ef~a~~v~~~--g~~~~~vp~g~~-~~~~~~~----~~ 856 (892)
|+.+.++.=.++-......+..-=...+.|+|.+-|.|-|.+..++.+.+++ +..+.=||-|-+ .++++.+ +.
T Consensus 44 r~i~gg~~p~~~~l~l~~~~~~~~~~fl~rrE~giV~lgG~~~V~vdG~~~~l~~~d~LYVp~G~~~v~~as~~a~~pae 123 (276)
T PRK00924 44 RIIVGGAMPVTKPLKLEAGKQLGVSYFLERRELGIINIGGAGTVTVDGETYELGHRDALYVGKGAKEVVFASADAANPAK 123 (276)
T ss_pred eEEEcccccCCCceecccCccccceeecCCcEEEEEEccceEEEEECCEEEecCCCcEEEECCCCcEEEEEecCCCCCcE
Confidence 3444443334444444433333234679999999999999999888775554 455677899977 5564332 24
Q ss_pred eEEEecc
Q 002690 857 LVVQLDP 863 (892)
Q Consensus 857 ~~~~~~~ 863 (892)
+.+.-.|
T Consensus 124 f~i~sAP 130 (276)
T PRK00924 124 FYLNSAP 130 (276)
T ss_pred EEEEccc
Confidence 5554444
No 109
>PF04962 KduI: KduI/IolB family; InterPro: IPR021120 The KduI/IolB family of enzymes includes 5-keto 4-deoxyuronate isomerase (KduI) and 5-deoxy-glucuronate isomerase (IolB). KduI is involved in pectin degradation by free-living soil bacteria that use pectin as a carbon source, breaking it down to 2-keto-3-deoxygluconate, which can ultimately be converted to pyruvate. KduI catalyses the fourth step in pectin degradation, namely the interconversion of 5-keto-4-deoxyuronate and 2,5-diketo-3-dexoygluconate []. KduI has a TIM-barrel fold []. IolB is one of several bacterial proteins encoded by the inositol operon (iolABCDEFGHIJ) in Bacillus subtilis that are involved in myo-inositol catabolism. The enzyme is responsible for isomerization of 5-deoxy-D-glucuronic acid by IolB to produce 2-deoxy-5-keto-D-gluconic acid []. IolBs possess a cupin-like structure.; GO: 0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses, 0008152 metabolic process; PDB: 1YWK_B 2QJV_B 1X8M_A 1XRU_A.
Probab=23.86 E-value=2.4e+02 Score=31.21 Aligned_cols=61 Identities=23% Similarity=0.249 Sum_probs=42.2
Q ss_pred ccccccceeeeEEEEEEecCceeEee---ceeEecC--------eEEEecCCeeEEEeeCCC-ceEEEecccc
Q 002690 805 TYWKHDVQWFEALKVILHGNAEFEAS---DVTLQGN--------HVFEVPDGHKLKITSGNS-GLVVQLDPIE 865 (892)
Q Consensus 805 ~~w~~~~~r~e~~~i~~~g~~ef~a~---~v~~~g~--------~~~~vp~g~~~~~~~~~~-~~~~~~~~~~ 865 (892)
.-|..+..|.|.+-|.|.|.++++.. --.+.+- .+.=||-|.+.+|+.... .+.+.-+|-+
T Consensus 38 ~~~~~~~~~~E~~vv~l~G~~~v~~~g~~~~~l~~R~~vF~~~~d~lYvp~g~~~~i~a~~~ae~~~~sapa~ 110 (261)
T PF04962_consen 38 ESLEFELERRELGVVNLGGKATVTVDGEEFYELGGRESVFDGPPDALYVPRGTKVVIFASTDAEFAVCSAPAH 110 (261)
T ss_dssp HCCCCCCCSEEEEEEEESSSEEEEETTEEEEEE-TTSSGGGS--EEEEE-TT--EEEEESSTEEEEEEEEE-S
T ss_pred CEEeccCCCcEEEEEEeCCEEEEEeCCceEEEecccccccCCCCcEEEeCCCCeEEEEEcCCCEEEEEccccC
Confidence 35777799999999999999999984 3445555 788899999999997533 5555444433
No 110
>PLN03014 carbonic anhydrase
Probab=22.82 E-value=1.1e+02 Score=35.38 Aligned_cols=14 Identities=36% Similarity=0.515 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHH
Q 002690 80 FHQEISRLKKLRSR 93 (892)
Q Consensus 80 ~~~~~~~l~~~~~~ 93 (892)
++..|++|+.|++.
T Consensus 83 ~~~~~~~~~~~~~~ 96 (347)
T PLN03014 83 YDEAIEALKKLLIE 96 (347)
T ss_pred HHHHHHHHHhhccc
Confidence 66777778777643
No 111
>PRK00742 chemotaxis-specific methylesterase; Provisional
Probab=20.91 E-value=1.4e+02 Score=33.43 Aligned_cols=38 Identities=16% Similarity=0.329 Sum_probs=30.8
Q ss_pred eceeEecCeEEEecCCeeEEEeeCCCceEEEecccccc
Q 002690 830 SDVTLQGNHVFEVPDGHKLKITSGNSGLVVQLDPIEQN 867 (892)
Q Consensus 830 ~~v~~~g~~~~~vp~g~~~~~~~~~~~~~~~~~~~~~~ 867 (892)
.+..++.+++|..|.|+.|.+..++.+....+++-++.
T Consensus 225 ~~~~~~~~~vy~~p~~~~~~~~~~~~~~~~~l~~~~~~ 262 (354)
T PRK00742 225 DGERLKPGHAYIAPGGKHMMVARSGANYRIKLDDGPPV 262 (354)
T ss_pred CCCEeeCCEEEEcCCCCEEEEEecCCceEEEECCCCCc
Confidence 35678899999999999999987666777888776553
No 112
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=20.87 E-value=72 Score=39.01 Aligned_cols=42 Identities=29% Similarity=0.279 Sum_probs=33.8
Q ss_pred ccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCC
Q 002690 300 DRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSS 358 (892)
Q Consensus 300 TRLG~~~PKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~ 358 (892)
||||-.-||| .|=++ ||=+|||+|- ....|. ..+|++.|.-.
T Consensus 330 trLGGKLPKG--VLLvG-PPGTGKTlLA-------------RAvAGE-A~VPFF~~sGS 371 (752)
T KOG0734|consen 330 TRLGGKLPKG--VLLVG-PPGTGKTLLA-------------RAVAGE-AGVPFFYASGS 371 (752)
T ss_pred hhccCcCCCc--eEEeC-CCCCchhHHH-------------HHhhcc-cCCCeEecccc
Confidence 8999999999 99998 7779999983 122353 68999999876
No 113
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=20.49 E-value=8.7e+02 Score=27.43 Aligned_cols=109 Identities=10% Similarity=0.095 Sum_probs=54.3
Q ss_pred CCcEEEEEeceEEeeceEEEee----E--------EEEeccCCC--CceecCCCccceecccccceEEEeeeEEeeC---
Q 002690 733 KGSELQIEVAEFLWRNVQLDGS----L--------IIVAENVMG--STRIADNGESILQYGYRCGRCKLNNVKVLNK--- 795 (892)
Q Consensus 733 ~~S~L~veG~~~~~~~v~ldGs----l--------vI~a~~~~g--~~~~~~~g~~i~~~~~~~~~~~~~~~~V~N~--- 795 (892)
.+..+.+.++.+.++++.+.++ + +|+.....+ .......+-.|.. ..|-.+.+++..+++.
T Consensus 54 ~~~~i~v~a~~VtI~~ltI~~~~~~GI~v~~s~~i~I~n~~i~~~~~~~~~~~~~GI~~--~~s~~v~I~~n~i~g~~d~ 131 (314)
T TIGR03805 54 GAEGLLVTSDDVTLSDLAVENTKGDGVKVKGSDGIIIRRLRVEWTGGPKSSNGAYGIYP--VESTNVLVEDSYVRGASDA 131 (314)
T ss_pred CCceEEEEeCCeEEEeeEEEcCCCCeEEEeCCCCEEEEeeEEEeccCccccCCcceEEE--eccCCEEEECCEEECCCcc
Confidence 3677888888888888888553 1 222211100 0000111223322 2355677777777553
Q ss_pred ceeeecCCCc-cccccceeeeEEEEEEecCceeEeeceeEecCeEEEecCCeeEE
Q 002690 796 GIDWDCGDNT-YWKHDVQWFEALKVILHGNAEFEASDVTLQGNHVFEVPDGHKLK 849 (892)
Q Consensus 796 G~~~~~~~~~-~w~~~~~r~e~~~i~~~g~~ef~a~~v~~~g~~~~~vp~g~~~~ 849 (892)
||-+...++. +..+.+.. -..=|.+. ...++.+.+|..+.-..|.-+.
T Consensus 132 GIyv~~s~~~~v~nN~~~~-n~~GI~i~-----~S~~~~v~~N~~~~N~~Gi~v~ 180 (314)
T TIGR03805 132 GIYVGQSQNIVVRNNVAEE-NVAGIEIE-----NSQNADVYNNIATNNTGGILVF 180 (314)
T ss_pred cEEECCCCCeEEECCEEcc-CcceEEEE-----ecCCcEEECCEEeccceeEEEe
Confidence 5655433332 32333321 11122222 2467777777777766666554
Done!